#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
PRA-PH	PF01503.12	gi|379002967|ref|YP_005258639.1|	-	0.033	14.4	0.6	5.2	7.4	0.0	2.9	3	1	0	3	3	3	0	Phosphoribosyl-ATP	pyrophosphohydrolase
Dak2	PF02734.12	gi|379002967|ref|YP_005258639.1|	-	2.1	8.0	8.4	1.7	8.3	2.4	2.5	1	1	2	3	3	3	0	DAK2	domain
zf-ribbon_3	PF13248.1	gi|379002971|ref|YP_005258643.1|	-	0.0012	18.0	3.6	0.011	14.8	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|379002971|ref|YP_005258643.1|	-	0.0023	17.0	1.2	0.0034	16.5	0.9	1.2	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
Terminase_GpA	PF05876.7	gi|379002971|ref|YP_005258643.1|	-	0.003	15.9	0.9	0.0032	15.8	0.6	1.0	1	0	0	1	1	1	1	Phage	terminase	large	subunit	(GpA)
Zn_Tnp_IS1595	PF12760.2	gi|379002971|ref|YP_005258643.1|	-	0.0038	17.0	4.3	0.0064	16.2	3.0	1.5	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|379002971|ref|YP_005258643.1|	-	0.0059	16.8	0.9	3.3	8.2	0.1	2.3	2	0	0	2	2	2	1	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|379002971|ref|YP_005258643.1|	-	0.006	16.5	3.7	0.51	10.3	0.3	2.2	2	0	0	2	2	2	1	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379002971|ref|YP_005258643.1|	-	0.0068	15.7	0.8	0.3	10.4	0.0	2.1	2	0	0	2	2	2	1	TFIIB	zinc-binding
Lar_restr_allev	PF14354.1	gi|379002971|ref|YP_005258643.1|	-	0.0082	16.4	0.3	0.0099	16.1	0.2	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
zinc_ribbon_2	PF13240.1	gi|379002971|ref|YP_005258643.1|	-	0.015	14.7	8.7	0.016	14.7	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|379002971|ref|YP_005258643.1|	-	0.017	14.7	0.1	0.02	14.5	0.0	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-Sec23_Sec24	PF04810.10	gi|379002971|ref|YP_005258643.1|	-	0.025	14.1	1.0	0.57	9.7	0.1	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
HypA	PF01155.14	gi|379002971|ref|YP_005258643.1|	-	0.047	13.3	0.2	0.67	9.6	0.2	2.0	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-C2H2	PF00096.21	gi|379002971|ref|YP_005258643.1|	-	0.049	13.9	2.4	7.8	7.0	0.6	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF968	PF06147.6	gi|379002971|ref|YP_005258643.1|	-	0.073	12.9	1.3	0.083	12.7	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF968)
Cys_rich_CPXG	PF14255.1	gi|379002971|ref|YP_005258643.1|	-	0.074	12.8	3.0	0.32	10.8	0.1	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
DZR	PF12773.2	gi|379002971|ref|YP_005258643.1|	-	0.1	12.4	1.4	0.26	11.1	1.0	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
Mu-like_Com	PF10122.4	gi|379002971|ref|YP_005258643.1|	-	0.12	11.4	4.2	1.9	7.6	0.0	2.2	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
GFA	PF04828.9	gi|379002971|ref|YP_005258643.1|	-	0.13	12.1	1.3	0.27	11.2	0.9	1.6	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF2310	PF10071.4	gi|379002971|ref|YP_005258643.1|	-	0.15	11.0	0.3	0.17	10.8	0.2	1.1	1	0	0	1	1	1	0	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
DUF35_N	PF12172.3	gi|379002971|ref|YP_005258643.1|	-	0.18	11.7	2.6	11	6.0	0.1	2.4	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin	PF00301.15	gi|379002971|ref|YP_005258643.1|	-	0.18	11.6	1.7	13	5.7	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin
DUF2296	PF10058.4	gi|379002971|ref|YP_005258643.1|	-	0.19	11.5	2.2	2	8.2	0.1	2.1	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Desulfoferrod_N	PF06397.7	gi|379002971|ref|YP_005258643.1|	-	0.19	11.1	4.5	0.41	10.0	0.5	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
TFIIS_C	PF01096.13	gi|379002971|ref|YP_005258643.1|	-	0.2	11.3	3.1	6	6.5	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
FdhE	PF04216.7	gi|379002971|ref|YP_005258643.1|	-	0.24	11.0	0.8	0.26	10.9	0.5	1.0	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
OrfB_Zn_ribbon	PF07282.6	gi|379002971|ref|YP_005258643.1|	-	0.28	10.8	2.3	1.2	8.8	1.6	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-Di19	PF05605.7	gi|379002971|ref|YP_005258643.1|	-	0.28	11.3	1.9	0.81	9.8	0.0	2.0	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-CHCC	PF10276.4	gi|379002971|ref|YP_005258643.1|	-	0.28	11.0	4.0	1.6	8.6	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	domain
zinc_ribbon_5	PF13719.1	gi|379002971|ref|YP_005258643.1|	-	0.29	10.7	3.0	4.6	6.9	2.1	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-BED	PF02892.10	gi|379002971|ref|YP_005258643.1|	-	0.31	10.8	4.0	0.97	9.2	0.2	2.1	2	0	0	2	2	2	0	BED	zinc	finger
zinc_ribbon_4	PF13717.1	gi|379002971|ref|YP_005258643.1|	-	0.32	10.7	2.9	5	6.9	2.0	2.4	1	1	0	1	1	1	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|379002971|ref|YP_005258643.1|	-	0.39	10.2	2.5	5.4	6.5	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.4	gi|379002971|ref|YP_005258643.1|	-	0.45	10.2	4.9	5.6	6.7	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-tcix	PF14952.1	gi|379002971|ref|YP_005258643.1|	-	0.49	9.7	4.7	2	7.8	2.9	2.1	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-H2C2_2	PF13465.1	gi|379002971|ref|YP_005258643.1|	-	0.55	10.6	5.1	3.4	8.1	0.2	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
PyrI_C	PF02748.10	gi|379002971|ref|YP_005258643.1|	-	0.82	9.1	4.2	6.4	6.3	0.2	2.2	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Zn_Tnp_IS1	PF03811.8	gi|379002971|ref|YP_005258643.1|	-	1.3	8.6	7.4	5.1	6.6	5.1	1.9	1	1	0	1	1	1	0	InsA	N-terminal	domain
zf-Mss51	PF13824.1	gi|379002971|ref|YP_005258643.1|	-	1.8	8.4	3.8	7.8	6.4	2.7	1.9	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-IS66	PF13005.2	gi|379002971|ref|YP_005258643.1|	-	8.7	6.4	9.7	82	3.2	2.1	2.5	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DUF1156	PF06634.7	gi|379002972|ref|YP_005258644.1|	-	2e-16	59.4	2.5	2.4e-16	59.2	0.4	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1156)
Methyltransf_26	PF13659.1	gi|379002972|ref|YP_005258644.1|	-	2.7e-09	37.0	7.6	1.4e-08	34.7	2.0	3.1	2	1	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|379002972|ref|YP_005258644.1|	-	3.2e-06	26.6	0.0	0.071	12.4	0.0	2.5	2	0	0	2	2	2	2	Conserved	hypothetical	protein	95
UPF0020	PF01170.13	gi|379002972|ref|YP_005258644.1|	-	3.3e-06	26.7	0.0	0.038	13.5	0.0	2.9	3	0	0	3	3	3	2	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|379002972|ref|YP_005258644.1|	-	0.12	11.8	0.0	0.36	10.2	0.0	1.7	2	0	0	2	2	2	0	D12	class	N6	adenine-specific	DNA	methyltransferase
DUF499	PF04465.7	gi|379002974|ref|YP_005258646.1|	-	1.5e-07	29.4	0.0	0.00012	19.8	0.0	2.6	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF499)
SNF2_N	PF00176.18	gi|379002976|ref|YP_005258648.1|	-	1.3e-20	73.4	0.0	6e-20	71.2	0.0	2.0	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
Helicase_C	PF00271.26	gi|379002976|ref|YP_005258648.1|	-	2.7e-12	46.3	0.1	9.2e-12	44.6	0.0	1.9	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|379002976|ref|YP_005258648.1|	-	5.7e-09	36.0	0.0	7.7e-07	29.1	0.0	2.3	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|379002976|ref|YP_005258648.1|	-	2.3e-06	27.2	0.1	6.8e-05	22.4	0.1	2.5	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
DUF3883	PF13020.1	gi|379002976|ref|YP_005258648.1|	-	0.0005	19.7	0.0	0.0013	18.4	0.0	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3883)
Peripla_BP_2	PF01497.13	gi|379002976|ref|YP_005258648.1|	-	0.011	14.9	0.0	0.057	12.5	0.0	2.0	2	0	0	2	2	2	0	Periplasmic	binding	protein
Flavi_DEAD	PF07652.9	gi|379002976|ref|YP_005258648.1|	-	0.026	14.2	0.0	0.063	13.0	0.0	1.6	1	0	0	1	1	1	0	Flavivirus	DEAD	domain
Helicase_C_4	PF13871.1	gi|379002976|ref|YP_005258648.1|	-	0.12	11.7	0.1	0.37	10.1	0.0	1.7	2	0	0	2	2	2	0	Helicase_C-like
AAA_22	PF13401.1	gi|379002976|ref|YP_005258648.1|	-	0.21	11.7	1.4	5.7	7.1	0.0	3.6	5	1	0	5	5	5	0	AAA	domain
DEAD	PF00270.24	gi|379002979|ref|YP_005258651.1|	-	9.4e-16	57.7	0.1	4e-15	55.7	0.1	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|379002979|ref|YP_005258651.1|	-	2.6e-12	46.4	0.0	1.8e-11	43.7	0.0	2.2	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|379002979|ref|YP_005258651.1|	-	0.00014	21.7	0.1	0.00036	20.4	0.0	1.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
PhoH	PF02562.11	gi|379002979|ref|YP_005258651.1|	-	0.03	13.5	0.1	0.088	12.0	0.1	1.7	1	0	0	1	1	1	0	PhoH-like	protein
AAA_19	PF13245.1	gi|379002979|ref|YP_005258651.1|	-	0.076	12.7	0.1	0.41	10.4	0.0	2.3	3	0	0	3	3	3	0	Part	of	AAA	domain
UvrD-helicase	PF00580.16	gi|379002979|ref|YP_005258651.1|	-	0.17	11.1	0.1	0.38	10.0	0.0	1.6	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
VirB3	PF05101.8	gi|379002982|ref|YP_005258654.1|	-	0.0064	16.4	6.6	0.017	15.1	0.0	2.8	3	0	0	3	3	3	1	Type	IV	secretory	pathway,	VirB3-like	protein
DUF4491	PF14898.1	gi|379002982|ref|YP_005258654.1|	-	0.22	11.6	0.1	0.22	11.6	0.1	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4491)
Zn_Tnp_IS1595	PF12760.2	gi|379002984|ref|YP_005258656.1|	-	0.051	13.3	2.2	0.11	12.3	1.5	1.5	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379002984|ref|YP_005258656.1|	-	0.078	12.9	1.0	6.3	6.8	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|379002984|ref|YP_005258656.1|	-	0.092	12.2	0.2	0.13	11.7	0.1	1.2	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379002984|ref|YP_005258656.1|	-	0.095	12.0	2.8	0.26	10.6	1.9	1.7	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF35_N	PF12172.3	gi|379002984|ref|YP_005258656.1|	-	0.19	11.6	3.8	3.9	7.4	0.4	2.6	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-ribbon_3	PF13248.1	gi|379002984|ref|YP_005258656.1|	-	1.1	8.5	4.6	6.7	6.0	3.1	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379002984|ref|YP_005258656.1|	-	1.9	8.0	4.3	5.9	6.5	2.7	1.9	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF3704	PF12488.3	gi|379002985|ref|YP_005258657.1|	-	0.044	13.4	0.0	0.16	11.5	0.0	2.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3704)
VWA_CoxE	PF05762.9	gi|379002987|ref|YP_005258659.1|	-	2.2e-10	40.0	0.0	4.7e-10	38.9	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA_2	PF13519.1	gi|379002987|ref|YP_005258659.1|	-	3.3e-08	33.8	0.1	8.5e-08	32.4	0.1	1.7	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|379002987|ref|YP_005258659.1|	-	0.0056	16.4	0.1	0.023	14.4	0.0	1.8	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
DUF2201	PF09967.4	gi|379002987|ref|YP_005258659.1|	-	0.019	14.9	0.0	0.031	14.3	0.0	1.4	1	0	0	1	1	1	0	VWA-like	domain	(DUF2201)
4HBT_2	PF13279.1	gi|379002988|ref|YP_005258660.1|	-	9.4e-08	32.5	0.1	1.2e-07	32.2	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.17	gi|379002988|ref|YP_005258660.1|	-	2.1e-06	27.7	0.1	3.1e-06	27.2	0.1	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
HMGL-like	PF00682.14	gi|379002989|ref|YP_005258661.1|	-	5.1e-38	131.0	0.0	1e-37	130.1	0.0	1.4	1	0	0	1	1	1	1	HMGL-like
LeuA_dimer	PF08502.5	gi|379002989|ref|YP_005258661.1|	-	1.4e-27	96.0	0.0	2.6e-27	95.2	0.0	1.4	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
PEP_mutase	PF13714.1	gi|379002989|ref|YP_005258661.1|	-	0.0073	15.5	0.2	0.021	14.0	0.0	1.7	2	0	0	2	2	2	1	Phosphoenolpyruvate	phosphomutase
TusA	PF01206.12	gi|379002990|ref|YP_005258662.1|	-	3.5e-11	42.5	0.0	3.8e-11	42.4	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|379002990|ref|YP_005258662.1|	-	0.0059	16.1	0.0	0.0068	15.9	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DUF59	PF01883.14	gi|379002991|ref|YP_005258663.1|	-	5.4e-15	55.1	1.8	7.2e-15	54.7	1.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
DUF418	PF04235.7	gi|379002992|ref|YP_005258664.1|	-	0.19	11.3	7.0	0.093	12.4	2.9	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF418)
MatE	PF01554.13	gi|379002992|ref|YP_005258664.1|	-	0.92	9.1	7.6	0.51	9.9	3.9	1.8	2	1	0	2	2	2	0	MatE
DegT_DnrJ_EryC1	PF01041.12	gi|379002993|ref|YP_005258665.1|	-	3.5e-115	384.8	0.4	5.5e-115	384.2	0.3	1.2	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|379002993|ref|YP_005258665.1|	-	3.1e-06	26.1	0.6	5.4e-06	25.3	0.4	1.3	1	0	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|379002993|ref|YP_005258665.1|	-	4.8e-06	25.9	0.1	6.8e-06	25.4	0.1	1.3	1	0	0	1	1	1	1	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|379002993|ref|YP_005258665.1|	-	0.00013	20.3	0.2	0.00018	19.9	0.1	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
ALS_ss_C	PF10369.4	gi|379002993|ref|YP_005258665.1|	-	0.071	12.8	0.0	0.17	11.6	0.0	1.6	1	0	0	1	1	1	0	Small	subunit	of	acetolactate	synthase
AFOR_C	PF01314.13	gi|379002994|ref|YP_005258666.1|	-	2.4e-109	365.5	0.0	2.9e-109	365.2	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|379002994|ref|YP_005258666.1|	-	8.4e-71	237.4	0.1	1.7e-70	236.4	0.0	1.5	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
TatD_DNase	PF01026.16	gi|379002995|ref|YP_005258667.1|	-	8.8e-25	87.3	0.0	1.1e-24	87.0	0.0	1.1	1	0	0	1	1	1	1	TatD	related	DNase
NOD	PF06816.8	gi|379002996|ref|YP_005258668.1|	-	0.012	14.6	0.0	0.43	9.7	0.0	2.3	1	1	1	2	2	2	0	NOTCH	protein
FAD-oxidase_C	PF02913.14	gi|379002997|ref|YP_005258669.1|	-	2.9e-48	164.3	0.0	3.7e-48	164.0	0.0	1.1	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|379002997|ref|YP_005258669.1|	-	2.6e-40	137.0	0.8	6.8e-40	135.7	0.5	1.7	1	0	0	1	1	1	1	FAD	binding	domain
HTH_24	PF13412.1	gi|379002998|ref|YP_005258670.1|	-	1.5e-06	27.4	0.0	4.5e-06	25.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379002998|ref|YP_005258670.1|	-	5.6e-06	25.9	0.3	1.8e-05	24.3	0.1	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379002998|ref|YP_005258670.1|	-	2.5e-05	23.8	0.1	0.00043	19.9	0.0	2.2	2	1	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|379002998|ref|YP_005258670.1|	-	0.0002	21.0	0.0	0.00094	18.8	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|379002998|ref|YP_005258670.1|	-	0.00025	20.5	0.1	0.00076	19.0	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.7	gi|379002998|ref|YP_005258670.1|	-	0.00046	19.7	0.0	0.00094	18.7	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.2	gi|379002998|ref|YP_005258670.1|	-	0.00076	19.2	0.1	0.0021	17.8	0.0	1.7	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|379002998|ref|YP_005258670.1|	-	0.00086	18.7	0.0	0.0016	17.9	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
FaeA	PF04703.7	gi|379002998|ref|YP_005258670.1|	-	0.0039	17.3	0.0	0.0061	16.6	0.0	1.3	1	0	0	1	1	1	1	FaeA-like	protein
FeoC	PF09012.5	gi|379002998|ref|YP_005258670.1|	-	0.024	14.3	0.0	0.047	13.4	0.0	1.5	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
Rrf2	PF02082.15	gi|379002998|ref|YP_005258670.1|	-	0.039	14.0	0.0	0.12	12.4	0.0	1.8	1	1	1	2	2	2	0	Transcriptional	regulator
HTH_27	PF13463.1	gi|379002998|ref|YP_005258670.1|	-	0.055	13.7	0.1	2.2	8.6	0.0	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|379002998|ref|YP_005258670.1|	-	0.057	13.2	0.0	0.088	12.6	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Fe_dep_repress	PF01325.14	gi|379002998|ref|YP_005258670.1|	-	0.097	12.6	0.0	0.22	11.4	0.0	1.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
EthD	PF07110.6	gi|379002999|ref|YP_005258671.1|	-	0.074	13.9	0.0	0.087	13.7	0.0	1.1	1	0	0	1	1	1	0	EthD	domain
Peptidase_M24	PF00557.19	gi|379003000|ref|YP_005258672.1|	-	6e-55	186.0	0.0	8.1e-55	185.6	0.0	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|379003000|ref|YP_005258672.1|	-	1.6e-08	35.1	0.0	2.7e-08	34.3	0.0	1.4	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Ead_Ea22	PF13935.1	gi|379003000|ref|YP_005258672.1|	-	0.033	14.5	0.0	0.1	12.9	0.0	1.7	1	1	1	2	2	2	0	Ead/Ea22-like	protein
Prok-JAB	PF14464.1	gi|379003001|ref|YP_005258673.1|	-	3.3e-17	61.9	0.0	3.8e-17	61.7	0.0	1.0	1	0	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|379003001|ref|YP_005258673.1|	-	0.0016	18.1	0.0	0.0032	17.1	0.0	1.6	1	1	0	1	1	1	1	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
RHH_1	PF01402.16	gi|379003002|ref|YP_005258674.1|	-	2.9e-08	33.2	0.3	6.4e-08	32.1	0.0	1.7	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|379003002|ref|YP_005258674.1|	-	2.6e-06	27.0	0.1	5.9e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
NikR_C	PF08753.6	gi|379003002|ref|YP_005258674.1|	-	4.7e-06	26.4	1.1	2.2e-05	24.2	0.2	2.0	2	0	0	2	2	2	1	NikR	C	terminal	nickel	binding	domain
RepB-RCR_reg	PF10723.4	gi|379003002|ref|YP_005258674.1|	-	0.012	15.3	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	Replication	regulatory	protein	RepB
ACT_6	PF13740.1	gi|379003002|ref|YP_005258674.1|	-	0.032	13.9	0.1	0.31	10.7	0.0	2.0	2	0	0	2	2	2	0	ACT	domain
DMRL_synthase	PF00885.14	gi|379003003|ref|YP_005258675.1|	-	1.5e-12	47.3	0.1	2e-12	46.9	0.1	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DUF1614	PF07758.6	gi|379003004|ref|YP_005258676.1|	-	1e-47	162.1	15.3	1e-47	162.1	10.6	1.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1614)
PhoU	PF01895.14	gi|379003005|ref|YP_005258677.1|	-	2.5e-10	40.6	3.3	4.2e-08	33.5	0.4	3.2	3	0	0	3	3	3	1	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|379003005|ref|YP_005258677.1|	-	1.1e-06	28.1	0.2	3.6e-06	26.5	0.1	1.9	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF1664	PF07889.7	gi|379003005|ref|YP_005258677.1|	-	0.014	15.1	0.6	1.2	8.9	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Hydrolase_3	PF08282.7	gi|379003006|ref|YP_005258678.1|	-	3.3e-07	30.1	0.0	3.7e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379003006|ref|YP_005258678.1|	-	0.0039	17.6	0.3	0.18	12.1	0.1	2.3	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379003006|ref|YP_005258678.1|	-	0.0041	17.3	0.2	0.0069	16.5	0.1	1.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD_2	PF13419.1	gi|379003006|ref|YP_005258678.1|	-	0.021	15.0	0.1	0.21	11.7	0.1	2.1	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
P-II	PF00543.17	gi|379003006|ref|YP_005258678.1|	-	0.13	12.6	0.0	0.22	11.9	0.0	1.3	1	0	0	1	1	1	0	Nitrogen	regulatory	protein	P-II
Fer4_15	PF13459.1	gi|379003007|ref|YP_005258679.1|	-	4.4e-10	39.9	0.0	5.1e-10	39.7	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379003007|ref|YP_005258679.1|	-	1.5e-06	28.4	0.0	2e-06	28.1	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.6	gi|379003007|ref|YP_005258679.1|	-	6.6e-06	25.8	0.1	2.6e-05	23.9	0.1	1.8	1	1	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
DNA_binding_1	PF01035.15	gi|379003008|ref|YP_005258680.1|	-	1.5e-22	79.0	0.0	2.1e-22	78.6	0.0	1.2	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
ThiS	PF02597.15	gi|379003009|ref|YP_005258681.1|	-	5.2e-09	36.4	0.0	5.6e-09	36.2	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
Urm1	PF09138.6	gi|379003009|ref|YP_005258681.1|	-	1.3e-06	28.4	0.0	1.5e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
dUTPase	PF00692.14	gi|379003011|ref|YP_005258683.1|	-	5.4e-19	67.9	0.0	3.3e-18	65.3	0.0	1.8	1	1	1	2	2	2	1	dUTPase
Metallophos	PF00149.23	gi|379003014|ref|YP_005258686.1|	-	5e-24	84.8	0.1	6.7e-24	84.3	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|379003014|ref|YP_005258686.1|	-	1.8e-05	24.6	0.0	2.4e-05	24.1	0.0	1.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
TatD_DNase	PF01026.16	gi|379003015|ref|YP_005258687.1|	-	6.8e-44	149.9	0.0	9.1e-44	149.5	0.0	1.2	1	0	0	1	1	1	1	TatD	related	DNase
Molybdopterin	PF00384.17	gi|379003016|ref|YP_005258688.1|	-	2.7e-23	82.4	0.0	6.8e-10	38.2	0.0	3.0	3	0	0	3	3	3	3	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379003016|ref|YP_005258688.1|	-	2.8e-08	33.5	0.0	6.9e-08	32.2	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
ABC_tran	PF00005.22	gi|379003017|ref|YP_005258689.1|	-	3.1e-36	124.6	0.0	3.9e-36	124.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003017|ref|YP_005258689.1|	-	3.7e-16	59.9	0.0	2.2e-10	40.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379003017|ref|YP_005258689.1|	-	2.3e-08	33.5	0.0	1.4e-05	24.4	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_10	PF12846.2	gi|379003017|ref|YP_005258689.1|	-	5.9e-06	25.9	0.4	0.012	15.1	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_29	PF13555.1	gi|379003017|ref|YP_005258689.1|	-	1.5e-05	24.4	0.1	3.1e-05	23.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379003017|ref|YP_005258689.1|	-	5.6e-05	22.6	0.2	0.00018	21.0	0.0	1.8	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|379003017|ref|YP_005258689.1|	-	0.00014	22.0	0.4	0.0029	17.7	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003017|ref|YP_005258689.1|	-	0.00035	20.6	2.0	0.0016	18.4	1.1	2.2	1	1	0	1	1	1	1	AAA	ATPase	domain
Miro	PF08477.8	gi|379003017|ref|YP_005258689.1|	-	0.00061	20.2	0.0	0.00098	19.6	0.0	1.3	1	0	0	1	1	1	1	Miro-like	protein
AAA_25	PF13481.1	gi|379003017|ref|YP_005258689.1|	-	0.00066	19.1	0.7	0.0088	15.4	0.5	2.3	1	1	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|379003017|ref|YP_005258689.1|	-	0.0011	17.9	0.0	0.0019	17.1	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
SbcCD_C	PF13558.1	gi|379003017|ref|YP_005258689.1|	-	0.0021	17.9	0.1	0.0083	16.0	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_33	PF13671.1	gi|379003017|ref|YP_005258689.1|	-	0.0024	17.7	0.0	0.0071	16.2	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|379003017|ref|YP_005258689.1|	-	0.0029	16.7	0.0	0.095	11.7	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
ABC_ATPase	PF09818.4	gi|379003017|ref|YP_005258689.1|	-	0.0029	16.2	0.6	0.14	10.7	0.0	2.8	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
DUF87	PF01935.12	gi|379003017|ref|YP_005258689.1|	-	0.0034	17.2	0.2	0.0077	16.0	0.1	1.5	2	0	0	2	2	1	1	Domain	of	unknown	function	DUF87
IstB_IS21	PF01695.12	gi|379003017|ref|YP_005258689.1|	-	0.0042	16.5	0.1	0.4	10.0	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_23	PF13476.1	gi|379003017|ref|YP_005258689.1|	-	0.0045	17.3	0.0	0.0066	16.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|379003017|ref|YP_005258689.1|	-	0.0045	16.1	0.1	0.0065	15.6	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|379003017|ref|YP_005258689.1|	-	0.0046	17.7	1.9	0.017	15.9	1.3	2.2	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|379003017|ref|YP_005258689.1|	-	0.0063	16.2	0.1	0.019	14.6	0.0	1.8	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|379003017|ref|YP_005258689.1|	-	0.0068	16.0	0.1	0.017	14.7	0.0	1.7	1	1	1	2	2	1	1	NACHT	domain
AAA	PF00004.24	gi|379003017|ref|YP_005258689.1|	-	0.012	15.7	0.1	0.2	11.8	0.1	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|379003017|ref|YP_005258689.1|	-	0.015	15.0	0.3	1.3	8.6	0.0	2.5	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|379003017|ref|YP_005258689.1|	-	0.017	15.4	0.0	0.1	12.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|379003017|ref|YP_005258689.1|	-	0.018	14.5	0.0	0.019	14.4	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NTPase_1	PF03266.10	gi|379003017|ref|YP_005258689.1|	-	0.018	14.7	0.2	0.048	13.3	0.0	1.8	2	0	0	2	2	2	0	NTPase
AAA_24	PF13479.1	gi|379003017|ref|YP_005258689.1|	-	0.019	14.5	0.9	0.054	13.0	0.1	2.1	2	1	1	3	3	2	0	AAA	domain
AAA_14	PF13173.1	gi|379003017|ref|YP_005258689.1|	-	0.022	14.6	0.0	0.14	12.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379003017|ref|YP_005258689.1|	-	0.024	14.5	0.1	0.031	14.2	0.1	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.1	gi|379003017|ref|YP_005258689.1|	-	0.03	13.8	1.1	0.22	11.0	0.0	2.2	2	1	1	3	3	3	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379003017|ref|YP_005258689.1|	-	0.031	13.4	0.0	0.077	12.1	0.0	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.1	gi|379003017|ref|YP_005258689.1|	-	0.047	13.4	0.5	0.83	9.4	0.0	2.7	3	0	0	3	3	2	0	Part	of	AAA	domain
Arch_ATPase	PF01637.13	gi|379003017|ref|YP_005258689.1|	-	0.055	13.1	0.0	0.25	10.9	0.0	1.9	2	0	0	2	2	2	0	Archaeal	ATPase
G-alpha	PF00503.15	gi|379003017|ref|YP_005258689.1|	-	0.077	11.6	0.0	0.12	11.0	0.0	1.3	1	0	0	1	1	1	0	G-protein	alpha	subunit
DUF815	PF05673.8	gi|379003017|ref|YP_005258689.1|	-	0.079	11.8	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
ATP_bind_1	PF03029.12	gi|379003017|ref|YP_005258689.1|	-	0.086	12.3	0.1	0.17	11.3	0.0	1.5	2	0	0	2	2	1	0	Conserved	hypothetical	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|379003017|ref|YP_005258689.1|	-	0.095	12.1	0.1	0.65	9.4	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_28	PF13521.1	gi|379003017|ref|YP_005258689.1|	-	0.095	12.6	0.0	0.23	11.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
MutS_V	PF00488.16	gi|379003017|ref|YP_005258689.1|	-	0.097	12.0	0.0	0.19	11.1	0.0	1.4	1	0	0	1	1	1	0	MutS	domain	V
cobW	PF02492.14	gi|379003017|ref|YP_005258689.1|	-	0.1	12.0	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
RNA_helicase	PF00910.17	gi|379003017|ref|YP_005258689.1|	-	0.11	12.6	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
DEAD	PF00270.24	gi|379003017|ref|YP_005258689.1|	-	0.12	11.8	0.0	0.22	11.0	0.0	1.5	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
Pox_A32	PF04665.7	gi|379003017|ref|YP_005258689.1|	-	0.16	11.2	0.0	0.25	10.5	0.0	1.2	1	0	0	1	1	1	0	Poxvirus	A32	protein
BPD_transp_1	PF00528.17	gi|379003018|ref|YP_005258690.1|	-	1.1e-16	60.8	10.1	1.1e-16	60.8	7.0	1.4	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
Ribosomal_S14	PF00253.16	gi|379003019|ref|YP_005258691.1|	-	0.023	14.0	0.7	0.56	9.6	0.0	2.3	2	0	0	2	2	2	0	Ribosomal	protein	S14p/S29e
SprT-like	PF10263.4	gi|379003019|ref|YP_005258691.1|	-	0.12	12.0	0.0	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	SprT-like	family
ELFV_dehydrog	PF00208.16	gi|379003021|ref|YP_005258693.1|	-	6e-68	229.0	0.3	7.9e-68	228.6	0.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|379003021|ref|YP_005258693.1|	-	1.6e-49	166.7	0.0	2.7e-49	166.1	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
AdoHcyase_NAD	PF00670.16	gi|379003021|ref|YP_005258693.1|	-	0.059	13.2	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|379003021|ref|YP_005258693.1|	-	0.11	11.6	2.2	0.082	12.0	0.3	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Iso_dh	PF00180.15	gi|379003022|ref|YP_005258694.1|	-	3e-91	305.9	0.9	3.7e-91	305.6	0.6	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
PdxA	PF04166.7	gi|379003022|ref|YP_005258694.1|	-	0.025	13.8	0.1	0.043	13.0	0.0	1.3	1	0	0	1	1	1	0	Pyridoxal	phosphate	biosynthetic	protein	PdxA
Shikimate_dh_N	PF08501.6	gi|379003022|ref|YP_005258694.1|	-	0.066	13.2	0.0	0.59	10.2	0.0	2.3	2	0	0	2	2	2	0	Shikimate	dehydrogenase	substrate	binding	domain
HMGL-like	PF00682.14	gi|379003023|ref|YP_005258695.1|	-	3.6e-75	252.6	4.4	4.7e-75	252.2	3.0	1.1	1	0	0	1	1	1	1	HMGL-like
Glyco_hydro_97	PF10566.4	gi|379003023|ref|YP_005258695.1|	-	0.02	14.0	0.5	0.056	12.5	0.0	1.9	2	1	1	3	3	3	0	Glycoside	hydrolase	97
Pro_dh	PF01619.13	gi|379003023|ref|YP_005258695.1|	-	0.069	12.1	0.3	0.11	11.4	0.2	1.3	1	0	0	1	1	1	0	Proline	dehydrogenase
Aconitase_C	PF00694.14	gi|379003024|ref|YP_005258696.1|	-	4.2e-17	62.4	0.0	5.6e-17	62.0	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.8	gi|379003024|ref|YP_005258696.1|	-	0.022	14.1	0.5	0.23	10.8	0.3	2.0	1	1	0	1	1	1	0	Aconitate	hydratase	2	N-terminus
Peptidase_M54	PF07998.6	gi|379003025|ref|YP_005258697.1|	-	4e-26	91.9	0.0	4.6e-26	91.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M54
Peptidase_M10	PF00413.19	gi|379003025|ref|YP_005258697.1|	-	0.0033	17.1	0.0	0.0033	17.1	0.0	1.2	1	0	0	1	1	1	1	Matrixin
Peptidase_M66	PF10462.4	gi|379003025|ref|YP_005258697.1|	-	0.008	15.0	0.0	0.01	14.6	0.0	1.1	1	0	0	1	1	1	1	Peptidase	M66
Peptidase_M43	PF05572.8	gi|379003025|ref|YP_005258697.1|	-	0.057	13.0	0.0	0.077	12.5	0.0	1.3	1	0	0	1	1	1	0	Pregnancy-associated	plasma	protein-A
Reprolysin_5	PF13688.1	gi|379003025|ref|YP_005258697.1|	-	0.15	11.9	0.0	0.2	11.5	0.0	1.3	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
PAPS_reduct	PF01507.14	gi|379003026|ref|YP_005258698.1|	-	5e-41	140.4	0.0	1.1e-40	139.3	0.0	1.6	2	0	0	2	2	2	1	Phosphoadenosine	phosphosulfate	reductase	family
Fer4_10	PF13237.1	gi|379003026|ref|YP_005258698.1|	-	2.8e-07	30.2	16.5	3.8e-06	26.5	5.6	2.2	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003026|ref|YP_005258698.1|	-	1.4e-06	28.5	7.9	1.4e-06	28.5	5.5	1.7	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003026|ref|YP_005258698.1|	-	1.2e-05	24.6	15.3	2e-05	23.9	1.1	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379003026|ref|YP_005258698.1|	-	2.3e-05	24.0	1.6	2.3e-05	24.0	1.1	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003026|ref|YP_005258698.1|	-	2.3e-05	24.1	8.9	2.3e-05	24.1	6.2	2.3	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379003026|ref|YP_005258698.1|	-	3.8e-05	24.0	6.7	0.046	14.1	0.1	3.0	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379003026|ref|YP_005258698.1|	-	0.00019	21.1	13.7	0.0012	18.6	0.5	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379003026|ref|YP_005258698.1|	-	0.0036	18.0	9.5	0.37	11.5	5.7	3.0	2	1	1	3	3	3	1	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|379003026|ref|YP_005258698.1|	-	0.0085	16.3	13.0	0.14	12.3	0.5	2.6	2	1	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379003026|ref|YP_005258698.1|	-	0.018	15.3	7.6	0.51	10.7	1.2	2.7	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003026|ref|YP_005258698.1|	-	0.02	14.9	9.4	0.2	11.6	1.7	2.5	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003026|ref|YP_005258698.1|	-	0.049	14.2	0.6	0.049	14.2	0.4	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379003026|ref|YP_005258698.1|	-	0.59	10.5	13.4	0.17	12.2	1.8	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|379003026|ref|YP_005258698.1|	-	1.5	9.3	16.8	0.072	13.4	1.7	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
HMGL-like	PF00682.14	gi|379003027|ref|YP_005258699.1|	-	4.7e-66	222.8	1.7	4.7e-66	222.8	1.2	1.7	2	1	0	2	2	2	1	HMGL-like
AsnC_trans_reg	PF01037.16	gi|379003027|ref|YP_005258699.1|	-	1.6e-16	59.7	1.2	1.1e-15	57.0	0.3	2.6	2	0	0	2	2	2	1	AsnC	family
ACT_4	PF13291.1	gi|379003027|ref|YP_005258699.1|	-	0.0069	16.6	1.8	0.048	14.0	0.8	2.4	1	1	1	2	2	2	1	ACT	domain
NapD	PF03927.8	gi|379003027|ref|YP_005258699.1|	-	0.076	12.8	5.7	0.045	13.5	0.8	2.9	3	0	0	3	3	3	0	NapD	protein
AlkA_N	PF06029.6	gi|379003027|ref|YP_005258699.1|	-	0.15	12.1	0.7	4.7	7.3	0.1	3.0	3	0	0	3	3	3	0	AlkA	N-terminal	domain
OTCace	PF00185.19	gi|379003028|ref|YP_005258700.1|	-	1.3e-53	181.0	0.2	4.3e-51	172.9	0.0	2.1	2	0	0	2	2	2	2	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.16	gi|379003028|ref|YP_005258700.1|	-	2.8e-43	146.9	0.1	5.2e-43	146.0	0.1	1.5	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
GSH-S_N	PF02951.9	gi|379003028|ref|YP_005258700.1|	-	0.11	12.2	0.1	0.36	10.6	0.1	1.9	2	0	0	2	2	2	0	Prokaryotic	glutathione	synthetase,	N-terminal	domain
Aconitase	PF00330.15	gi|379003029|ref|YP_005258701.1|	-	8.4e-62	209.1	0.0	9.9e-36	123.1	0.0	2.3	2	0	0	2	2	2	2	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.8	gi|379003029|ref|YP_005258701.1|	-	0.00062	18.4	0.0	0.001	17.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
TFIID_30kDa	PF03540.8	gi|379003029|ref|YP_005258701.1|	-	0.07	12.9	0.0	0.16	11.8	0.0	1.6	1	0	0	1	1	1	0	Transcription	initiation	factor	TFIID	23-30kDa	subunit
Peptidase_S8	PF00082.17	gi|379003030|ref|YP_005258702.1|	-	2.6e-62	210.5	8.6	3.2e-62	210.2	6.0	1.1	1	0	0	1	1	1	1	Subtilase	family
EMG1	PF03587.9	gi|379003032|ref|YP_005258704.1|	-	1.2e-48	165.1	0.0	1.3e-48	164.9	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
RNA_pol_L_2	PF13656.1	gi|379003033|ref|YP_005258705.1|	-	3.6e-19	67.9	0.0	4.1e-19	67.7	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|379003033|ref|YP_005258705.1|	-	0.11	11.5	0.0	0.16	11.1	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
DUF2067	PF09840.4	gi|379003034|ref|YP_005258706.1|	-	1e-65	220.8	0.3	1.2e-65	220.6	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
HAUS-augmin3	PF14932.1	gi|379003034|ref|YP_005258706.1|	-	0.029	13.5	0.1	0.052	12.7	0.0	1.4	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
DUF1819	PF08849.6	gi|379003034|ref|YP_005258706.1|	-	0.075	12.4	0.0	0.12	11.7	0.0	1.3	1	0	0	1	1	1	0	Putative	inner	membrane	protein	(DUF1819)
UPF0547	PF10571.4	gi|379003035|ref|YP_005258707.1|	-	9.4e-05	22.0	0.6	0.24	11.1	0.1	2.5	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|379003035|ref|YP_005258707.1|	-	0.00015	20.8	1.7	0.18	11.0	0.1	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|379003035|ref|YP_005258707.1|	-	0.00032	20.4	0.5	0.0006	19.5	0.3	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Auto_anti-p27	PF06677.7	gi|379003035|ref|YP_005258707.1|	-	0.00032	20.3	2.1	0.00055	19.6	1.4	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
OrfB_Zn_ribbon	PF07282.6	gi|379003035|ref|YP_005258707.1|	-	0.00062	19.3	0.7	0.0014	18.2	0.5	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.7	gi|379003035|ref|YP_005258707.1|	-	0.00073	19.2	0.3	0.0014	18.3	0.2	1.4	1	0	0	1	1	1	1	zinc-ribbons
DUF35_N	PF12172.3	gi|379003035|ref|YP_005258707.1|	-	0.0062	16.4	0.5	0.014	15.2	0.3	1.6	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-FPG_IleRS	PF06827.9	gi|379003035|ref|YP_005258707.1|	-	0.0067	16.0	2.5	0.015	14.9	1.7	1.6	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
zinc_ribbon_4	PF13717.1	gi|379003035|ref|YP_005258707.1|	-	0.01	15.5	1.3	4.3	7.1	0.1	2.7	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379003035|ref|YP_005258707.1|	-	0.015	14.8	2.0	4.2	7.0	0.2	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|379003035|ref|YP_005258707.1|	-	0.019	14.7	0.6	0.035	13.8	0.4	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-NADH-PPase	PF09297.6	gi|379003035|ref|YP_005258707.1|	-	0.021	14.3	1.5	0.064	12.7	1.0	1.8	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|379003035|ref|YP_005258707.1|	-	0.034	13.8	0.9	3.8	7.2	0.0	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
zf-tcix	PF14952.1	gi|379003035|ref|YP_005258707.1|	-	0.036	13.4	1.1	0.078	12.3	0.8	1.5	1	0	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DNA_ligase_ZBD	PF03119.11	gi|379003035|ref|YP_005258707.1|	-	0.077	12.7	6.6	2.4	7.9	0.1	3.2	4	0	0	4	4	3	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_2	PF13240.1	gi|379003035|ref|YP_005258707.1|	-	0.083	12.4	5.4	0.53	9.8	3.6	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379003035|ref|YP_005258707.1|	-	0.19	11.7	4.2	4	7.4	3.1	2.4	1	1	1	2	2	2	0	Zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|379003035|ref|YP_005258707.1|	-	0.21	11.4	1.0	15	5.4	0.1	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
TF_Zn_Ribbon	PF08271.7	gi|379003035|ref|YP_005258707.1|	-	0.5	9.7	5.3	2.3	7.6	0.1	2.3	1	1	0	2	2	2	0	TFIIB	zinc-binding
zf-TFIIB	PF13453.1	gi|379003035|ref|YP_005258707.1|	-	0.67	9.1	2.6	13	5.1	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
DUF1610	PF07754.6	gi|379003035|ref|YP_005258707.1|	-	4.6	7.4	8.9	9.9	6.3	0.7	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
SNase	PF00565.12	gi|379003036|ref|YP_005258708.1|	-	0.0026	17.9	0.0	0.0033	17.6	0.0	1.1	1	0	0	1	1	1	1	Staphylococcal	nuclease	homologue
KilA-N	PF04383.8	gi|379003036|ref|YP_005258708.1|	-	0.12	12.0	0.0	0.16	11.6	0.0	1.4	1	1	0	1	1	1	0	KilA-N	domain
AAA_25	PF13481.1	gi|379003037|ref|YP_005258709.1|	-	1.2e-07	31.3	0.0	2e-07	30.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003037|ref|YP_005258709.1|	-	2.1e-06	27.3	0.1	6.4e-06	25.8	0.1	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
KaiC	PF06745.8	gi|379003037|ref|YP_005258709.1|	-	4.5e-06	25.9	0.0	0.00011	21.3	0.0	2.4	1	1	0	1	1	1	1	KaiC
AAA_22	PF13401.1	gi|379003037|ref|YP_005258709.1|	-	4.7e-06	26.7	0.0	1.2e-05	25.4	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003037|ref|YP_005258709.1|	-	9.5e-06	26.4	0.1	3.4e-05	24.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|379003037|ref|YP_005258709.1|	-	1.2e-05	25.0	0.0	3.1e-05	23.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379003037|ref|YP_005258709.1|	-	2e-05	24.7	0.0	5.7e-05	23.3	0.0	1.8	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
GvpD	PF07088.6	gi|379003037|ref|YP_005258709.1|	-	2.1e-05	23.0	0.0	0.003	15.9	0.0	2.2	2	0	0	2	2	2	1	GvpD	gas	vesicle	protein
KTI12	PF08433.5	gi|379003037|ref|YP_005258709.1|	-	0.0004	19.6	0.0	0.0013	17.9	0.0	1.7	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_16	PF13191.1	gi|379003037|ref|YP_005258709.1|	-	0.00055	19.9	0.0	0.001	19.0	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|379003037|ref|YP_005258709.1|	-	0.0009	19.6	0.0	0.0021	18.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|379003037|ref|YP_005258709.1|	-	0.0011	18.6	0.2	1.5	8.4	0.0	2.6	2	1	1	3	3	3	2	NTPase
Bac_DnaA	PF00308.13	gi|379003037|ref|YP_005258709.1|	-	0.0017	18.0	0.0	0.0073	15.9	0.0	1.9	1	1	0	1	1	1	1	Bacterial	dnaA	protein
RuvB_N	PF05496.7	gi|379003037|ref|YP_005258709.1|	-	0.0032	16.5	0.1	0.011	14.8	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
MMR_HSR1	PF01926.18	gi|379003037|ref|YP_005258709.1|	-	0.004	17.0	0.0	0.0084	16.0	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Zeta_toxin	PF06414.7	gi|379003037|ref|YP_005258709.1|	-	0.0055	15.8	0.0	0.0082	15.2	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_18	PF13238.1	gi|379003037|ref|YP_005258709.1|	-	0.0064	16.7	0.0	0.015	15.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
TIP49	PF06068.8	gi|379003037|ref|YP_005258709.1|	-	0.0095	14.6	0.0	0.017	13.8	0.0	1.4	1	0	0	1	1	1	1	TIP49	C-terminus
AAA_11	PF13086.1	gi|379003037|ref|YP_005258709.1|	-	0.01	15.4	0.0	0.048	13.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379003037|ref|YP_005258709.1|	-	0.012	15.3	0.0	0.029	14.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.1	gi|379003037|ref|YP_005258709.1|	-	0.013	15.4	0.0	0.061	13.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|379003037|ref|YP_005258709.1|	-	0.014	14.4	0.0	0.094	11.6	0.0	1.9	1	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
IstB_IS21	PF01695.12	gi|379003037|ref|YP_005258709.1|	-	0.02	14.3	0.1	0.43	9.9	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Arch_ATPase	PF01637.13	gi|379003037|ref|YP_005258709.1|	-	0.024	14.3	0.0	0.053	13.2	0.0	1.7	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_14	PF13173.1	gi|379003037|ref|YP_005258709.1|	-	0.027	14.3	0.0	0.067	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
HEM4	PF02602.10	gi|379003037|ref|YP_005258709.1|	-	0.032	13.4	0.0	0.9	8.7	0.0	2.2	2	0	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
RNA_helicase	PF00910.17	gi|379003037|ref|YP_005258709.1|	-	0.037	14.2	0.0	0.084	13.0	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Mg_chelatase	PF01078.16	gi|379003037|ref|YP_005258709.1|	-	0.095	11.8	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
CbiA	PF01656.18	gi|379003037|ref|YP_005258709.1|	-	0.098	12.0	0.1	0.55	9.5	0.0	2.0	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NACHT	PF05729.7	gi|379003037|ref|YP_005258709.1|	-	0.12	11.9	0.0	0.37	10.4	0.0	1.8	2	0	0	2	2	1	0	NACHT	domain
COX4_pro_2	PF07835.7	gi|379003038|ref|YP_005258710.1|	-	0.064	13.2	1.4	0.082	12.8	1.0	1.2	1	0	0	1	1	1	0	Bacterial	aa3	type	cytochrome	c	oxidase	subunit	IV
Ribosomal_L23	PF00276.15	gi|379003039|ref|YP_005258711.1|	-	7.3e-16	57.9	2.4	9.7e-16	57.4	1.7	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L23
DUF3854	PF12965.2	gi|379003039|ref|YP_005258711.1|	-	0.036	13.6	0.9	3	7.4	0.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3854)
DUF4284	PF14112.1	gi|379003039|ref|YP_005258711.1|	-	0.062	13.7	0.1	0.069	13.6	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4284)
Ribosomal_L4	PF00573.17	gi|379003040|ref|YP_005258712.1|	-	5.1e-42	143.4	0.0	6e-42	143.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L3	PF00297.17	gi|379003041|ref|YP_005258713.1|	-	6.9e-63	212.4	0.0	8e-63	212.2	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L3
DUF2175	PF09943.4	gi|379003042|ref|YP_005258714.1|	-	3.4e-38	129.7	0.3	3.8e-38	129.5	0.2	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
XkdW	PF09636.5	gi|379003042|ref|YP_005258714.1|	-	0.021	14.7	0.3	0.041	13.7	0.2	1.4	1	0	0	1	1	1	0	XkdW	protein
YhfH	PF14149.1	gi|379003042|ref|YP_005258714.1|	-	0.041	13.6	0.3	0.074	12.8	0.2	1.4	1	0	0	1	1	1	0	YhfH-like	protein
Coagulin	PF02035.10	gi|379003042|ref|YP_005258714.1|	-	0.12	12.0	0.0	0.13	11.8	0.0	1.1	1	0	0	1	1	1	0	Coagulin
Glyco_hydro_31	PF01055.21	gi|379003043|ref|YP_005258715.1|	-	1.7e-133	445.7	0.0	2e-133	445.4	0.0	1.0	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
Gal_mutarotas_2	PF13802.1	gi|379003043|ref|YP_005258715.1|	-	3.6e-13	49.1	0.1	8.1e-13	48.0	0.1	1.6	1	0	0	1	1	1	1	Galactose	mutarotase-like
DUF187	PF02638.10	gi|379003043|ref|YP_005258715.1|	-	0.22	10.3	0.0	6.8	5.4	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolase	like	GH101
GHMP_kinases_N	PF00288.21	gi|379003044|ref|YP_005258716.1|	-	9.8e-10	38.3	1.5	2e-09	37.3	1.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|379003044|ref|YP_005258716.1|	-	0.041	14.0	0.0	0.14	12.3	0.0	1.9	1	0	0	1	1	1	0	GHMP	kinases	C	terminal
HCV_NS4a	PF01006.15	gi|379003044|ref|YP_005258716.1|	-	0.071	12.6	0.0	0.54	9.8	0.0	2.4	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	protein	NS4a
B12-binding	PF02310.14	gi|379003044|ref|YP_005258716.1|	-	0.1	12.5	0.5	1.1	9.0	0.3	2.4	1	1	0	1	1	1	0	B12	binding	domain
HHH_5	PF14520.1	gi|379003045|ref|YP_005258717.1|	-	0.11	12.6	0.0	7.5	6.8	0.0	2.0	1	1	1	2	2	2	0	Helix-hairpin-helix	domain
Aminotran_1_2	PF00155.16	gi|379003046|ref|YP_005258718.1|	-	8.9e-35	120.2	0.0	2.3e-34	118.9	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.8	gi|379003046|ref|YP_005258718.1|	-	0.00029	19.5	0.0	0.00049	18.8	0.0	1.3	1	0	0	1	1	1	1	Allinase
PRT_C	PF08372.5	gi|379003047|ref|YP_005258719.1|	-	0.044	13.2	0.1	0.081	12.4	0.1	1.3	1	0	0	1	1	1	0	Plant	phosphoribosyltransferase	C-terminal
DHquinase_I	PF01487.10	gi|379003048|ref|YP_005258720.1|	-	1.3e-49	168.9	0.0	1.7e-49	168.5	0.0	1.2	1	0	0	1	1	1	1	Type	I	3-dehydroquinase
CM_2	PF01817.16	gi|379003048|ref|YP_005258720.1|	-	4.7e-14	52.2	0.1	1.4e-13	50.6	0.0	1.8	2	0	0	2	2	2	1	Chorismate	mutase	type	II
UPF0175	PF03683.8	gi|379003049|ref|YP_005258721.1|	-	0.19	11.2	0.1	0.19	11.2	0.1	1.7	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0175)
CCDC66	PF15236.1	gi|379003049|ref|YP_005258721.1|	-	2	7.9	4.3	3.2	7.3	3.0	1.3	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	66
PIN	PF01850.16	gi|379003050|ref|YP_005258722.1|	-	5.1e-05	23.5	0.4	0.00013	22.3	0.1	1.8	1	1	0	1	1	1	1	PIN	domain
UPF0175	PF03683.8	gi|379003051|ref|YP_005258723.1|	-	0.00043	19.6	0.4	0.00071	19.0	0.3	1.8	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
TPR_6	PF13174.1	gi|379003051|ref|YP_005258723.1|	-	0.055	13.9	0.1	0.11	13.0	0.1	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
YqhG	PF11079.3	gi|379003052|ref|YP_005258724.1|	-	0.032	13.0	5.9	0.05	12.4	4.1	1.3	1	0	0	1	1	1	0	Bacterial	protein	YqhG	of	unknown	function
TPR_MLP1_2	PF07926.7	gi|379003052|ref|YP_005258724.1|	-	0.033	13.9	3.1	0.058	13.1	2.2	1.4	1	0	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
U1snRNP70_N	PF12220.3	gi|379003052|ref|YP_005258724.1|	-	0.084	13.1	5.1	0.14	12.4	3.6	1.4	1	0	0	1	1	1	0	U1	small	nuclear	ribonucleoprotein	of	70kDa	MW	N	terminal
DUF3829	PF12889.2	gi|379003052|ref|YP_005258724.1|	-	0.096	11.8	1.2	0.13	11.4	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
IncA	PF04156.9	gi|379003052|ref|YP_005258724.1|	-	0.11	12.1	2.0	0.16	11.5	1.4	1.2	1	0	0	1	1	1	0	IncA	protein
Z1	PF10593.4	gi|379003052|ref|YP_005258724.1|	-	0.11	11.6	2.4	0.16	11.1	1.7	1.3	1	0	0	1	1	1	0	Z1	domain
NERD	PF08378.6	gi|379003052|ref|YP_005258724.1|	-	0.16	12.1	0.2	0.16	12.1	0.1	2.5	1	1	1	2	2	1	0	Nuclease-related	domain
Activator-TraM	PF11657.3	gi|379003052|ref|YP_005258724.1|	-	0.18	11.2	1.6	0.25	10.8	1.1	1.3	1	0	0	1	1	1	0	Transcriptional	activator	TraM
DUF342	PF03961.8	gi|379003052|ref|YP_005258724.1|	-	0.19	10.0	0.6	0.33	9.3	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
RRF	PF01765.14	gi|379003052|ref|YP_005258724.1|	-	0.21	11.0	1.3	0.41	10.1	0.9	1.5	1	0	0	1	1	1	0	Ribosome	recycling	factor
TFR_dimer	PF04253.10	gi|379003052|ref|YP_005258724.1|	-	0.7	9.4	4.6	1.5	8.3	3.1	1.8	1	1	0	1	1	1	0	Transferrin	receptor-like	dimerisation	domain
PaREP1	PF05942.6	gi|379003053|ref|YP_005258725.1|	-	7.3e-29	99.9	7.2	8.4e-29	99.7	5.0	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HTH_29	PF13551.1	gi|379003053|ref|YP_005258725.1|	-	0.023	14.8	0.3	0.18	11.9	0.2	2.0	2	0	0	2	2	2	0	Winged	helix-turn	helix
HEPN	PF05168.9	gi|379003053|ref|YP_005258725.1|	-	0.024	14.5	3.8	0.094	12.6	2.7	2.0	1	1	0	1	1	1	0	HEPN	domain
DUF1542	PF07564.6	gi|379003053|ref|YP_005258725.1|	-	0.17	11.9	0.7	1.5	8.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1542)
MMR_HSR1	PF01926.18	gi|379003054|ref|YP_005258726.1|	-	9.1e-07	28.8	0.0	1.1e-06	28.6	0.0	1.1	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|379003054|ref|YP_005258726.1|	-	9.3e-05	22.9	0.0	0.00023	21.6	0.0	1.6	1	1	0	1	1	1	1	Miro-like	protein
Ras	PF00071.17	gi|379003054|ref|YP_005258726.1|	-	0.00017	21.0	0.3	0.016	14.6	0.0	2.1	2	0	0	2	2	2	2	Ras	family
Arf	PF00025.16	gi|379003054|ref|YP_005258726.1|	-	0.026	13.7	0.0	0.041	13.1	0.0	1.4	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
cobW	PF02492.14	gi|379003054|ref|YP_005258726.1|	-	0.068	12.6	0.2	3.6	7.0	0.0	2.2	1	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF1576	PF07613.6	gi|379003057|ref|YP_005258729.1|	-	0.028	13.9	1.3	0.031	13.8	0.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1576)
Peptidase_A24	PF01478.13	gi|379003057|ref|YP_005258729.1|	-	3.6	7.7	13.3	0.28	11.3	2.4	2.2	1	1	1	2	2	2	0	Type	IV	leader	peptidase	family
HTH_20	PF12840.2	gi|379003058|ref|YP_005258730.1|	-	0.00014	21.5	0.0	0.00027	20.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|379003058|ref|YP_005258730.1|	-	0.003	16.8	0.0	0.0064	15.8	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379003058|ref|YP_005258730.1|	-	0.0054	16.3	0.0	0.0098	15.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
DUF977	PF06163.6	gi|379003058|ref|YP_005258730.1|	-	0.1	12.3	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF977)
TetR_N	PF00440.18	gi|379003058|ref|YP_005258730.1|	-	0.16	11.6	1.6	2.1	8.0	0.0	2.9	3	0	0	3	3	3	0	Bacterial	regulatory	proteins,	tetR	family
DUF2275	PF10039.4	gi|379003060|ref|YP_005258732.1|	-	0.074	12.9	0.5	0.11	12.3	0.3	1.3	1	0	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2275)
PDH	PF02153.12	gi|379003061|ref|YP_005258733.1|	-	4.8e-13	48.5	0.0	6.7e-13	48.1	0.0	1.1	1	0	0	1	1	1	1	Prephenate	dehydrogenase
F420_oxidored	PF03807.12	gi|379003061|ref|YP_005258733.1|	-	6.2e-07	29.7	1.5	2.5e-05	24.5	1.0	2.4	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|379003061|ref|YP_005258733.1|	-	0.024	14.4	0.0	0.057	13.2	0.0	1.6	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.11	gi|379003061|ref|YP_005258733.1|	-	0.11	11.9	0.3	9.1	5.7	0.1	2.2	1	1	1	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.13	gi|379003061|ref|YP_005258733.1|	-	0.12	12.3	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	TrkA-N	domain
Rossmann-like	PF10727.4	gi|379003061|ref|YP_005258733.1|	-	0.17	11.6	1.1	0.6	9.8	0.7	1.9	1	1	0	1	1	1	0	Rossmann-like	domain
FAD_binding_5	PF00941.16	gi|379003062|ref|YP_005258734.1|	-	7.6e-44	149.1	0.0	1.2e-43	148.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|379003062|ref|YP_005258734.1|	-	2.5e-24	85.1	1.8	4.2e-24	84.4	1.3	1.4	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Fer2_2	PF01799.15	gi|379003063|ref|YP_005258735.1|	-	1.8e-21	75.7	0.3	1.8e-21	75.7	0.2	1.8	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|379003063|ref|YP_005258735.1|	-	3.2e-06	26.7	0.3	3.2e-06	26.7	0.2	2.1	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|379003063|ref|YP_005258735.1|	-	0.00011	22.0	0.7	0.00011	22.0	0.5	1.8	1	1	1	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Ald_Xan_dh_C2	PF02738.13	gi|379003064|ref|YP_005258736.1|	-	3.7e-139	464.5	0.0	4.5e-139	464.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|379003064|ref|YP_005258736.1|	-	1.1e-19	70.4	1.6	3e-17	62.6	0.1	3.1	2	1	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
NTP_transf_3	PF12804.2	gi|379003065|ref|YP_005258737.1|	-	3.6e-32	111.6	2.0	4.6e-32	111.3	1.4	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
CTP_transf_3	PF02348.14	gi|379003065|ref|YP_005258737.1|	-	1.1e-05	25.2	0.0	1.5e-05	24.7	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
IspD	PF01128.14	gi|379003065|ref|YP_005258737.1|	-	0.062	12.8	0.1	0.19	11.1	0.1	1.8	2	1	0	2	2	2	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CN_hydrolase	PF00795.17	gi|379003066|ref|YP_005258738.1|	-	2.6e-21	75.8	0.0	3.9e-21	75.2	0.0	1.2	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
LysE	PF01810.13	gi|379003067|ref|YP_005258739.1|	-	1.6e-23	82.9	17.9	2.1e-23	82.6	12.4	1.0	1	0	0	1	1	1	1	LysE	type	translocator
CCSMST1	PF15013.1	gi|379003067|ref|YP_005258739.1|	-	0.16	11.8	1.0	21	5.1	0.1	2.6	2	0	0	2	2	2	0	CCSMST1	family
DUF72	PF01904.13	gi|379003068|ref|YP_005258740.1|	-	8.7e-53	179.4	1.8	9.7e-53	179.2	1.3	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
DUF4366	PF14283.1	gi|379003069|ref|YP_005258741.1|	-	0.075	12.4	1.2	0.35	10.2	0.2	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4366)
DUF4236	PF14020.1	gi|379003069|ref|YP_005258741.1|	-	0.18	11.9	5.8	1.2	9.3	0.3	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4236)
adh_short	PF00106.20	gi|379003070|ref|YP_005258742.1|	-	4.3e-32	111.3	2.5	1.9e-31	109.2	2.1	1.6	2	0	0	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|379003070|ref|YP_005258742.1|	-	4.2e-30	105.2	0.0	5e-30	105.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|379003070|ref|YP_005258742.1|	-	4.9e-15	55.6	0.4	1.1e-14	54.5	0.4	1.5	2	0	0	2	2	2	1	KR	domain
Epimerase	PF01370.16	gi|379003070|ref|YP_005258742.1|	-	1.1e-08	34.8	0.0	3.9e-08	33.0	0.0	1.6	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
Robl_LC7	PF03259.12	gi|379003070|ref|YP_005258742.1|	-	0.03	13.8	0.2	0.53	9.8	0.0	2.6	3	0	0	3	3	3	0	Roadblock/LC7	domain
Glyco_transf_28	PF03033.15	gi|379003070|ref|YP_005258742.1|	-	0.039	13.7	0.0	0.21	11.3	0.0	2.0	2	0	0	2	2	2	0	Glycosyltransferase	family	28	N-terminal	domain
NmrA	PF05368.8	gi|379003070|ref|YP_005258742.1|	-	0.048	12.9	0.1	0.07	12.3	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
Eno-Rase_NADH_b	PF12242.3	gi|379003070|ref|YP_005258742.1|	-	0.058	13.1	0.2	0.15	11.8	0.1	1.8	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
NAD_binding_10	PF13460.1	gi|379003070|ref|YP_005258742.1|	-	0.14	12.1	1.4	0.25	11.3	0.6	1.8	1	1	0	1	1	1	0	NADH(P)-binding
Bacteriocin_IId	PF09221.5	gi|379003070|ref|YP_005258742.1|	-	0.23	11.4	6.7	1.4	8.9	0.7	2.6	2	0	0	2	2	2	0	Bacteriocin	class	IId	cyclical	uberolysin-like
DUF4235	PF14019.1	gi|379003070|ref|YP_005258742.1|	-	8.5	6.3	9.6	6.8	6.6	0.4	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4235)
DUF429	PF04250.8	gi|379003071|ref|YP_005258743.1|	-	1.7e-35	122.1	1.2	8.9e-35	119.8	0.8	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
DAO	PF01266.19	gi|379003072|ref|YP_005258744.1|	-	4.2e-39	134.4	3.8	6.9e-39	133.7	2.7	1.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|379003072|ref|YP_005258744.1|	-	1.4e-08	34.0	0.2	2.1e-06	26.8	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|379003072|ref|YP_005258744.1|	-	8.9e-08	32.2	0.9	0.00041	20.2	0.4	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|379003072|ref|YP_005258744.1|	-	4.2e-07	29.9	0.1	9.3e-07	28.7	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379003072|ref|YP_005258744.1|	-	5.4e-06	26.6	0.2	0.00042	20.4	0.2	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379003072|ref|YP_005258744.1|	-	1.4e-05	24.1	0.1	0.0093	14.9	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|379003072|ref|YP_005258744.1|	-	0.00014	20.9	1.0	0.00027	20.0	0.7	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|379003072|ref|YP_005258744.1|	-	0.00098	19.4	3.0	0.0021	18.4	1.5	2.0	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379003072|ref|YP_005258744.1|	-	0.0024	17.6	1.8	0.81	9.4	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|379003072|ref|YP_005258744.1|	-	0.0026	16.4	0.6	0.0043	15.7	0.1	1.5	2	0	0	2	2	2	1	Tryptophan	halogenase
Thi4	PF01946.12	gi|379003072|ref|YP_005258744.1|	-	0.0037	16.4	1.0	0.0082	15.2	0.7	1.6	1	0	0	1	1	1	1	Thi4	family
UDPG_MGDP_dh_N	PF03721.9	gi|379003072|ref|YP_005258744.1|	-	0.0042	16.4	0.7	0.0066	15.8	0.5	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
HI0933_like	PF03486.9	gi|379003072|ref|YP_005258744.1|	-	0.0056	15.2	1.7	0.0091	14.5	1.0	1.5	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_7	PF13241.1	gi|379003072|ref|YP_005258744.1|	-	0.011	15.9	0.1	0.027	14.7	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Amino_oxidase	PF01593.19	gi|379003072|ref|YP_005258744.1|	-	0.012	14.7	0.3	1.5	7.8	0.1	2.2	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
FAD_oxidored	PF12831.2	gi|379003072|ref|YP_005258744.1|	-	0.028	13.4	0.1	0.042	12.9	0.1	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
ApbA	PF02558.11	gi|379003072|ref|YP_005258744.1|	-	0.053	12.9	1.2	0.098	12.0	0.8	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.17	gi|379003072|ref|YP_005258744.1|	-	0.18	10.6	1.5	9.8	4.9	1.4	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
SBP_bac_3	PF00497.15	gi|379003073|ref|YP_005258745.1|	-	1.3e-57	194.6	0.1	1.6e-57	194.3	0.1	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.6	gi|379003073|ref|YP_005258745.1|	-	4.9e-05	23.0	0.0	7.9e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	NMT1/THI5	like
Phosphonate-bd	PF12974.2	gi|379003073|ref|YP_005258745.1|	-	0.00016	21.1	0.5	0.032	13.5	0.1	2.9	2	1	0	2	2	2	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_7	PF03480.8	gi|379003073|ref|YP_005258745.1|	-	0.071	12.2	0.0	0.64	9.0	0.0	2.3	2	1	1	3	3	3	0	Bacterial	extracellular	solute-binding	protein,	family	7
Ribosomal_S14	PF00253.16	gi|379003074|ref|YP_005258746.1|	-	5.9e-17	60.7	4.3	6e-17	60.7	3.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
zf-FPG_IleRS	PF06827.9	gi|379003074|ref|YP_005258746.1|	-	0.009	15.6	4.3	0.014	15.0	3.0	1.3	1	0	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
zf-HIT	PF04438.11	gi|379003074|ref|YP_005258746.1|	-	0.56	9.9	3.6	1.9	8.2	2.5	1.9	1	1	0	1	1	1	0	HIT	zinc	finger
Ribosomal_S8	PF00410.14	gi|379003075|ref|YP_005258747.1|	-	1.8e-23	82.7	0.0	2.4e-23	82.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
Ribosomal_L32e	PF01655.13	gi|379003076|ref|YP_005258748.1|	-	8.7e-39	131.9	0.5	1.1e-38	131.6	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
Ribosomal_L19e	PF01280.15	gi|379003077|ref|YP_005258749.1|	-	6.1e-47	159.1	5.9	6.7e-47	158.9	4.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Elongin_A	PF06881.6	gi|379003077|ref|YP_005258749.1|	-	0.0057	17.0	0.3	0.0098	16.2	0.2	1.4	1	0	0	1	1	1	1	RNA	polymerase	II	transcription	factor	SIII	(Elongin)	subunit	A
HTH_17	PF12728.2	gi|379003077|ref|YP_005258749.1|	-	0.014	15.6	1.3	1.8	8.9	0.0	2.9	3	1	0	3	3	3	0	Helix-turn-helix	domain
Vps35	PF03635.12	gi|379003077|ref|YP_005258749.1|	-	0.072	11.2	0.0	0.092	10.8	0.0	1.1	1	0	0	1	1	1	0	Vacuolar	protein	sorting-associated	protein	35
Ribosomal_L18p	PF00861.17	gi|379003078|ref|YP_005258750.1|	-	7.5e-33	113.2	0.1	1.1e-32	112.7	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	L18p/L5e	family
Ribosomal_L18_c	PF14204.1	gi|379003078|ref|YP_005258750.1|	-	5.3e-16	58.9	0.4	9.6e-16	58.1	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Pantoate_transf	PF02548.10	gi|379003080|ref|YP_005258752.1|	-	4.9e-110	366.7	0.8	5.8e-110	366.5	0.5	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|379003080|ref|YP_005258752.1|	-	1.4e-10	40.8	0.9	1e-09	37.9	0.6	2.0	1	1	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
Robl_LC7	PF03259.12	gi|379003080|ref|YP_005258752.1|	-	0.00031	20.2	0.4	0.0043	16.5	0.1	2.2	2	0	0	2	2	2	1	Roadblock/LC7	domain
peroxidase	PF00141.18	gi|379003080|ref|YP_005258752.1|	-	0.074	12.5	0.1	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Peroxidase
ApbA_C	PF08546.6	gi|379003081|ref|YP_005258753.1|	-	2.2e-35	121.3	0.1	3e-35	120.9	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA	C	terminal
ApbA	PF02558.11	gi|379003081|ref|YP_005258753.1|	-	8.1e-18	64.3	0.1	3.2e-17	62.3	0.1	1.9	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
DUF1537	PF07005.6	gi|379003081|ref|YP_005258753.1|	-	0.04	13.5	2.1	0.065	12.9	0.7	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF1537
DUF137	PF02006.11	gi|379003083|ref|YP_005258755.1|	-	2e-82	274.8	1.5	2.4e-82	274.6	1.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
DUF4525	PF15027.1	gi|379003083|ref|YP_005258755.1|	-	0.074	12.5	0.2	0.15	11.6	0.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4525)
TPP_enzyme_M	PF00205.17	gi|379003083|ref|YP_005258755.1|	-	0.12	12.1	1.8	0.85	9.3	0.5	2.5	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	central	domain
NCD2	PF04905.8	gi|379003083|ref|YP_005258755.1|	-	0.12	12.1	0.5	0.36	10.6	0.1	2.0	3	0	0	3	3	3	0	NAB	conserved	region	2	(NCD2)
4HBT	PF03061.17	gi|379003084|ref|YP_005258756.1|	-	1.5e-17	63.4	5.0	9.8e-10	38.4	0.2	2.2	2	0	0	2	2	2	2	Thioesterase	superfamily
MaoC_dehydratas	PF01575.14	gi|379003084|ref|YP_005258756.1|	-	0.0063	15.8	0.2	0.018	14.3	0.0	1.8	2	0	0	2	2	2	1	MaoC	like	domain
AAA_25	PF13481.1	gi|379003086|ref|YP_005258758.1|	-	0.022	14.1	0.2	0.34	10.2	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|379003086|ref|YP_005258758.1|	-	0.028	14.3	0.0	0.099	12.6	0.0	1.9	1	0	0	1	1	1	0	AAA	ATPase	domain
DOG1	PF14144.1	gi|379003086|ref|YP_005258758.1|	-	0.077	13.0	0.1	0.23	11.5	0.1	1.8	1	0	0	1	1	1	0	Seed	dormancy	control
Sigma54_activat	PF00158.21	gi|379003086|ref|YP_005258758.1|	-	0.13	11.7	0.0	0.23	10.9	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_29	PF13555.1	gi|379003086|ref|YP_005258758.1|	-	0.16	11.5	0.0	0.35	10.4	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DAP3	PF10236.4	gi|379003086|ref|YP_005258758.1|	-	0.24	10.2	0.1	0.41	9.5	0.1	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
ACT_5	PF13710.1	gi|379003087|ref|YP_005258759.1|	-	0.028	14.2	0.9	7.9	6.3	0.0	2.4	2	0	0	2	2	2	0	ACT	domain
SOG2	PF10428.4	gi|379003087|ref|YP_005258759.1|	-	0.034	12.7	0.2	0.044	12.4	0.1	1.1	1	0	0	1	1	1	0	RAM	signalling	pathway	protein
Unstab_antitox	PF09720.5	gi|379003087|ref|YP_005258759.1|	-	0.049	13.3	4.2	0.51	10.0	0.0	2.5	2	0	0	2	2	2	0	Putative	addiction	module	component
Atg14	PF10186.4	gi|379003087|ref|YP_005258759.1|	-	0.12	11.2	0.3	0.15	11.0	0.2	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
CobN-Mg_chel	PF02514.11	gi|379003087|ref|YP_005258759.1|	-	0.13	9.5	1.7	0.17	9.2	1.2	1.0	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
LUC7	PF03194.10	gi|379003087|ref|YP_005258759.1|	-	0.27	10.7	2.0	0.34	10.3	1.4	1.1	1	0	0	1	1	1	0	LUC7	N_terminus
HSCB_C	PF07743.8	gi|379003087|ref|YP_005258759.1|	-	0.32	11.4	6.8	4.3	7.8	0.3	2.2	2	0	0	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
DUF349	PF03993.7	gi|379003087|ref|YP_005258759.1|	-	1.5	9.0	4.1	1.2	9.3	0.1	2.2	2	1	0	2	2	2	0	Domain	of	Unknown	Function	(DUF349)
SlyX	PF04102.7	gi|379003087|ref|YP_005258759.1|	-	1.8	9.0	5.0	1.7	9.0	1.2	2.5	1	1	2	3	3	3	0	SlyX
DUF3782	PF12644.2	gi|379003087|ref|YP_005258759.1|	-	4.6	7.0	5.5	1.2	8.9	0.6	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3782)
MgtE_N	PF03448.12	gi|379003088|ref|YP_005258760.1|	-	0.17	12.2	1.1	0.19	12.0	0.1	1.6	2	0	0	2	2	2	0	MgtE	intracellular	N	domain
CbiA	PF01656.18	gi|379003089|ref|YP_005258761.1|	-	1.4e-08	34.4	0.0	2.3e-08	33.6	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|379003089|ref|YP_005258761.1|	-	0.00011	22.1	1.3	0.00068	19.5	0.5	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|379003089|ref|YP_005258761.1|	-	0.025	13.9	1.5	0.16	11.3	1.1	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|379003089|ref|YP_005258761.1|	-	0.033	13.7	0.1	0.12	11.9	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
MipZ	PF09140.6	gi|379003089|ref|YP_005258761.1|	-	0.035	13.1	0.2	0.068	12.2	0.2	1.4	1	0	0	1	1	1	0	ATPase	MipZ
HTH_27	PF13463.1	gi|379003090|ref|YP_005258762.1|	-	0.02	15.1	0.2	0.046	14.0	0.1	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
ORC5_C	PF14630.1	gi|379003090|ref|YP_005258762.1|	-	0.024	14.1	0.1	0.031	13.7	0.1	1.1	1	0	0	1	1	1	0	Origin	recognition	complex	(ORC)	subunit	5	C-terminus
tRNA-synt_1	PF00133.17	gi|379003091|ref|YP_005258763.1|	-	5.6e-173	576.1	1.0	6.9e-173	575.8	0.7	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|379003091|ref|YP_005258763.1|	-	1.3e-31	109.4	0.5	2.6e-31	108.4	0.3	1.5	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|379003091|ref|YP_005258763.1|	-	7.8e-27	93.9	0.1	1.2e-09	37.4	0.0	4.2	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|379003091|ref|YP_005258763.1|	-	1.9e-06	27.2	0.0	0.0017	17.5	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.1	gi|379003091|ref|YP_005258763.1|	-	5.1e-06	25.9	0.0	1.4e-05	24.4	0.0	1.6	1	1	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1f	PF01921.13	gi|379003091|ref|YP_005258763.1|	-	2.4e-05	23.1	0.0	8.7e-05	21.3	0.0	1.8	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|379003091|ref|YP_005258763.1|	-	0.011	14.6	0.3	1.4	7.6	0.0	2.9	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(R)
PMT	PF02366.13	gi|379003092|ref|YP_005258764.1|	-	2.9e-13	49.7	19.2	2.9e-13	49.7	13.3	3.5	3	1	1	4	4	4	2	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT_2	PF13231.1	gi|379003092|ref|YP_005258764.1|	-	3.7e-12	46.4	16.9	3.7e-12	46.4	11.7	2.3	3	0	0	3	3	3	1	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF2029	PF09594.5	gi|379003092|ref|YP_005258764.1|	-	7.7e-06	25.5	26.5	7.7e-06	25.5	18.4	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2029)
Auto_anti-p27	PF06677.7	gi|379003093|ref|YP_005258765.1|	-	2.4e-16	59.2	0.5	3.5e-16	58.6	0.3	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.1	gi|379003093|ref|YP_005258765.1|	-	3.3e-05	22.9	0.9	5.5e-05	22.2	0.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379003093|ref|YP_005258765.1|	-	0.00031	20.0	1.5	0.00062	19.0	1.0	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
OrfB_Zn_ribbon	PF07282.6	gi|379003093|ref|YP_005258765.1|	-	0.00078	19.0	0.1	0.0017	17.9	0.1	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.7	gi|379003093|ref|YP_005258765.1|	-	0.00097	18.8	0.3	0.0019	17.9	0.2	1.4	1	0	0	1	1	1	1	zinc-ribbons
DZR	PF12773.2	gi|379003093|ref|YP_005258765.1|	-	0.0036	17.0	0.2	0.0056	16.4	0.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
CpXC	PF14353.1	gi|379003093|ref|YP_005258765.1|	-	0.01	15.7	0.0	0.012	15.6	0.0	1.2	1	0	0	1	1	1	0	CpXC	protein
Zn_Tnp_IS1595	PF12760.2	gi|379003093|ref|YP_005258765.1|	-	0.014	15.2	1.7	0.033	14.0	0.2	2.0	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|379003093|ref|YP_005258765.1|	-	0.025	14.2	3.2	0.032	13.9	0.7	2.4	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-RING_3	PF14369.1	gi|379003093|ref|YP_005258765.1|	-	0.032	14.2	0.1	8.5	6.4	0.0	2.2	2	0	0	2	2	2	0	zinc-finger
Elf1	PF05129.8	gi|379003093|ref|YP_005258765.1|	-	0.072	12.7	0.1	0.14	11.8	0.1	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zf-IS66	PF13005.2	gi|379003093|ref|YP_005258765.1|	-	0.085	12.8	3.3	2.5	8.1	0.1	2.3	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
GFA	PF04828.9	gi|379003093|ref|YP_005258765.1|	-	0.11	12.3	0.1	1.9	8.4	0.0	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Sgf11	PF08209.6	gi|379003093|ref|YP_005258765.1|	-	0.15	11.4	1.1	1.2	8.5	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Zn-ribbon_8	PF09723.5	gi|379003093|ref|YP_005258765.1|	-	0.23	11.4	1.7	2.3	8.2	0.9	2.3	1	1	2	3	3	3	0	Zinc	ribbon	domain
UPF0547	PF10571.4	gi|379003093|ref|YP_005258765.1|	-	0.37	10.5	1.6	1.1	9.0	1.1	1.8	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
RIO1	PF01163.17	gi|379003094|ref|YP_005258766.1|	-	0.00018	20.9	0.0	0.00024	20.4	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|379003094|ref|YP_005258766.1|	-	0.011	15.4	0.0	2.6	7.7	0.0	2.2	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
PUA	PF01472.15	gi|379003095|ref|YP_005258767.1|	-	3.1e-20	71.6	0.8	8.8e-20	70.2	0.6	1.8	1	0	0	1	1	1	1	PUA	domain
DUF1947	PF09183.5	gi|379003095|ref|YP_005258767.1|	-	0.0073	16.0	0.1	0.023	14.4	0.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
HTH_3	PF01381.17	gi|379003096|ref|YP_005258768.1|	-	1.8e-10	40.4	0.1	4.1e-10	39.3	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|379003096|ref|YP_005258768.1|	-	1.9e-08	34.2	0.1	4.2e-08	33.1	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|379003096|ref|YP_005258768.1|	-	3.8e-08	33.4	0.0	2.1e-07	31.0	0.0	2.2	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|379003096|ref|YP_005258768.1|	-	0.00013	21.7	0.0	0.0003	20.5	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_11	PF08279.7	gi|379003096|ref|YP_005258768.1|	-	0.0021	17.6	0.1	0.0083	15.7	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
HTH_17	PF12728.2	gi|379003096|ref|YP_005258768.1|	-	0.0025	18.0	0.1	0.15	12.2	0.0	2.9	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|379003096|ref|YP_005258768.1|	-	0.011	15.4	0.0	0.069	12.8	0.0	2.3	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_22	PF13309.1	gi|379003096|ref|YP_005258768.1|	-	0.015	15.0	0.1	0.066	12.9	0.0	2.2	2	0	0	2	2	2	0	HTH	domain
HTH_38	PF13936.1	gi|379003096|ref|YP_005258768.1|	-	0.081	12.4	0.0	0.23	11.0	0.0	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|379003096|ref|YP_005258768.1|	-	0.11	12.5	0.0	0.32	11.0	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
TRM	PF02005.11	gi|379003097|ref|YP_005258769.1|	-	9.9e-71	238.6	0.0	2.6e-70	237.2	0.0	1.7	1	1	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Methyltransf_31	PF13847.1	gi|379003097|ref|YP_005258769.1|	-	2.2e-08	33.7	0.0	3.2e-07	30.0	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379003097|ref|YP_005258769.1|	-	4.2e-07	29.9	0.0	5.7e-06	26.3	0.0	2.4	1	1	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379003097|ref|YP_005258769.1|	-	0.00025	20.4	0.0	0.0018	17.6	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_16	PF10294.4	gi|379003097|ref|YP_005258769.1|	-	0.00042	19.8	0.1	0.00061	19.2	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Met_10	PF02475.11	gi|379003097|ref|YP_005258769.1|	-	0.0013	18.3	0.0	0.0019	17.8	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Cons_hypoth95	PF03602.10	gi|379003097|ref|YP_005258769.1|	-	0.0027	17.1	0.0	0.0043	16.4	0.0	1.3	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_25	PF13649.1	gi|379003097|ref|YP_005258769.1|	-	0.0057	17.0	0.0	0.012	15.9	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003097|ref|YP_005258769.1|	-	0.006	17.1	0.0	0.18	12.4	0.0	2.2	2	0	0	2	2	2	1	Methyltransferase	domain
AAA_18	PF13238.1	gi|379003098|ref|YP_005258770.1|	-	3.5e-16	59.6	0.0	4.9e-16	59.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003098|ref|YP_005258770.1|	-	4.9e-14	53.2	0.1	7.7e-14	52.5	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379003098|ref|YP_005258770.1|	-	7.2e-08	32.4	0.2	9.8e-08	31.9	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
ADK	PF00406.17	gi|379003098|ref|YP_005258770.1|	-	6.8e-05	22.7	0.0	9.2e-05	22.3	0.0	1.4	1	1	0	1	1	1	1	Adenylate	kinase
AAA_19	PF13245.1	gi|379003098|ref|YP_005258770.1|	-	0.00053	19.6	2.1	0.00083	19.0	0.8	2.0	1	1	1	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|379003098|ref|YP_005258770.1|	-	0.0013	18.9	0.0	0.0015	18.7	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin2	PF13189.1	gi|379003098|ref|YP_005258770.1|	-	0.0016	18.3	0.0	0.034	14.0	0.0	2.2	1	1	1	2	2	2	1	Cytidylate	kinase-like	family
Thymidylate_kin	PF02223.12	gi|379003098|ref|YP_005258770.1|	-	0.0024	17.2	0.1	1.2	8.5	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
AAA_5	PF07728.9	gi|379003098|ref|YP_005258770.1|	-	0.0037	16.9	0.0	0.0058	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.7	gi|379003098|ref|YP_005258770.1|	-	0.0047	16.0	0.2	0.0067	15.5	0.1	1.7	1	1	0	1	1	1	1	Zeta	toxin
APS_kinase	PF01583.15	gi|379003098|ref|YP_005258770.1|	-	0.011	15.4	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
ATP_bind_2	PF03668.10	gi|379003098|ref|YP_005258770.1|	-	0.017	14.1	0.4	0.15	11.0	0.3	2.0	1	1	0	1	1	1	0	P-loop	ATPase	protein	family
CPT	PF07931.7	gi|379003098|ref|YP_005258770.1|	-	0.024	14.2	0.7	0.078	12.5	0.5	1.7	1	1	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
AAA_28	PF13521.1	gi|379003098|ref|YP_005258770.1|	-	0.026	14.4	0.1	0.049	13.5	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
AAA_16	PF13191.1	gi|379003098|ref|YP_005258770.1|	-	0.032	14.1	0.5	0.046	13.7	0.4	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|379003098|ref|YP_005258770.1|	-	0.043	12.6	0.0	0.063	12.1	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
SKI	PF01202.17	gi|379003098|ref|YP_005258770.1|	-	0.076	12.8	0.3	0.74	9.6	0.2	2.0	1	1	0	1	1	1	0	Shikimate	kinase
ABC_tran	PF00005.22	gi|379003098|ref|YP_005258770.1|	-	0.077	13.2	0.1	0.11	12.7	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
AAA	PF00004.24	gi|379003098|ref|YP_005258770.1|	-	0.082	13.1	0.0	0.12	12.5	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
KTI12	PF08433.5	gi|379003098|ref|YP_005258770.1|	-	0.082	12.1	0.0	0.12	11.5	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
PRK	PF00485.13	gi|379003098|ref|YP_005258770.1|	-	0.11	12.0	0.0	0.19	11.2	0.0	1.5	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Viral_helicase1	PF01443.13	gi|379003098|ref|YP_005258770.1|	-	0.13	11.7	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
MobB	PF03205.9	gi|379003098|ref|YP_005258770.1|	-	0.14	11.8	0.0	0.28	10.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_binding	PF01877.12	gi|379003099|ref|YP_005258771.1|	-	6.2e-24	84.3	0.1	7.3e-24	84.0	0.1	1.1	1	0	0	1	1	1	1	RNA	binding
Methyltransf_26	PF13659.1	gi|379003100|ref|YP_005258772.1|	-	6.4e-14	51.9	0.0	1.1e-13	51.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|379003100|ref|YP_005258772.1|	-	1.7e-11	44.0	0.0	5.1e-11	42.4	0.0	1.7	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|379003100|ref|YP_005258772.1|	-	0.0073	15.8	0.0	0.013	14.9	0.0	1.4	1	0	0	1	1	1	1	D12	class	N6	adenine-specific	DNA	methyltransferase
N6_N4_Mtase	PF01555.13	gi|379003100|ref|YP_005258772.1|	-	0.022	14.2	0.0	0.25	10.7	0.0	2.4	2	1	1	3	3	3	0	DNA	methylase
DUF373	PF04123.8	gi|379003101|ref|YP_005258773.1|	-	5.8e-89	298.4	16.4	2.3e-88	296.5	11.4	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
DUF3400	PF11880.3	gi|379003101|ref|YP_005258773.1|	-	0.0035	16.5	0.2	0.0081	15.3	0.2	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3400)
OppC_N	PF12911.2	gi|379003101|ref|YP_005258773.1|	-	0.52	9.7	3.3	2.8	7.3	2.3	2.3	1	1	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
MscS_porin	PF12795.2	gi|379003102|ref|YP_005258774.1|	-	2.4e-06	27.0	48.2	0.002	17.4	10.9	2.5	2	0	0	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
Mod_r	PF07200.8	gi|379003102|ref|YP_005258774.1|	-	0.00042	20.2	40.7	0.013	15.4	9.7	3.9	2	2	2	4	4	4	2	Modifier	of	rudimentary	(Mod(r))	protein
DUF869	PF05911.6	gi|379003102|ref|YP_005258774.1|	-	0.00073	17.9	35.6	0.0088	14.3	24.7	2.0	1	1	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
Reo_sigmaC	PF04582.7	gi|379003102|ref|YP_005258774.1|	-	0.00079	18.7	8.9	0.056	12.6	1.3	2.8	2	1	1	3	3	3	3	Reovirus	sigma	C	capsid	protein
DUF948	PF06103.6	gi|379003102|ref|YP_005258774.1|	-	0.00079	19.2	18.5	0.023	14.5	1.8	4.0	2	2	2	4	4	4	2	Bacterial	protein	of	unknown	function	(DUF948)
Spc7	PF08317.6	gi|379003102|ref|YP_005258774.1|	-	0.0009	17.9	43.3	0.098	11.2	4.4	3.2	1	1	2	3	3	3	2	Spc7	kinetochore	protein
AAA_13	PF13166.1	gi|379003102|ref|YP_005258774.1|	-	0.0011	17.5	37.8	0.27	9.6	26.0	2.1	1	1	0	1	1	1	1	AAA	domain
IncA	PF04156.9	gi|379003102|ref|YP_005258774.1|	-	0.0022	17.6	48.4	0.1	12.1	18.9	2.5	2	1	0	2	2	2	2	IncA	protein
Baculo_PEP_C	PF04513.7	gi|379003102|ref|YP_005258774.1|	-	0.003	17.3	19.7	0.015	15.0	1.0	2.8	2	1	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Myosin_tail_1	PF01576.14	gi|379003102|ref|YP_005258774.1|	-	0.0039	14.9	43.3	0.0046	14.7	18.0	2.1	2	0	0	2	2	2	2	Myosin	tail
AAA_27	PF13514.1	gi|379003102|ref|YP_005258774.1|	-	0.0051	14.5	33.3	0.01	13.5	13.3	2.1	2	0	0	2	2	2	2	AAA	domain
Med28	PF11594.3	gi|379003102|ref|YP_005258774.1|	-	0.0054	16.9	1.7	0.0054	16.9	1.2	3.8	2	2	1	3	3	2	1	Mediator	complex	subunit	28
WEMBL	PF05701.6	gi|379003102|ref|YP_005258774.1|	-	0.0057	15.1	43.7	0.025	13.0	30.3	1.8	1	1	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
Atg14	PF10186.4	gi|379003102|ref|YP_005258774.1|	-	0.0065	15.4	53.9	0.11	11.4	7.0	3.7	1	1	3	4	4	4	2	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IFT57	PF10498.4	gi|379003102|ref|YP_005258774.1|	-	0.0069	15.1	35.4	0.027	13.2	5.3	3.2	1	1	2	3	3	3	1	Intra-flagellar	transport	protein	57
Laminin_I	PF06008.9	gi|379003102|ref|YP_005258774.1|	-	0.012	14.9	38.0	0.23	10.7	13.5	2.2	2	0	0	2	2	2	0	Laminin	Domain	I
ALIX_LYPXL_bnd	PF13949.1	gi|379003102|ref|YP_005258774.1|	-	0.012	14.6	36.9	0.078	11.9	5.2	2.3	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
DUF4239	PF14023.1	gi|379003102|ref|YP_005258774.1|	-	0.013	14.8	1.8	0.013	14.8	1.3	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4239)
Laminin_II	PF06009.7	gi|379003102|ref|YP_005258774.1|	-	0.019	14.6	33.3	0.085	12.6	4.6	3.4	2	1	1	3	3	3	0	Laminin	Domain	II
DUF2450	PF10475.4	gi|379003102|ref|YP_005258774.1|	-	0.022	13.7	26.7	0.28	10.0	0.8	3.2	2	1	1	3	3	3	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
Syntaxin	PF00804.20	gi|379003102|ref|YP_005258774.1|	-	0.023	14.8	34.9	0.11	12.6	10.4	3.9	1	1	2	3	3	3	0	Syntaxin
MtrG	PF04210.8	gi|379003102|ref|YP_005258774.1|	-	0.023	14.3	10.7	0.078	12.6	0.2	3.6	3	0	0	3	3	3	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
DUF1664	PF07889.7	gi|379003102|ref|YP_005258774.1|	-	0.024	14.4	28.8	0.033	13.9	3.5	3.9	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF1664)
DUF4201	PF13870.1	gi|379003102|ref|YP_005258774.1|	-	0.024	14.0	47.6	0.27	10.6	6.5	4.0	2	2	1	3	3	3	0	Domain	of	unknown	function	(DUF4201)
TPR_MLP1_2	PF07926.7	gi|379003102|ref|YP_005258774.1|	-	0.042	13.6	49.3	0.027	14.2	9.5	4.7	1	1	3	5	5	5	0	TPR/MLP1/MLP2-like	protein
MCPsignal	PF00015.16	gi|379003102|ref|YP_005258774.1|	-	0.043	13.3	19.8	0.12	11.8	3.6	2.9	2	1	0	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
APG6	PF04111.7	gi|379003102|ref|YP_005258774.1|	-	0.094	11.7	45.2	0.035	13.1	14.9	3.2	1	1	3	4	4	4	0	Autophagy	protein	Apg6
PilJ	PF13675.1	gi|379003102|ref|YP_005258774.1|	-	0.14	12.4	18.0	1.7	8.9	0.7	3.5	2	2	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Filament	PF00038.16	gi|379003102|ref|YP_005258774.1|	-	0.21	10.9	40.7	0.17	11.3	13.7	2.8	1	1	0	2	2	2	0	Intermediate	filament	protein
WXG100	PF06013.7	gi|379003102|ref|YP_005258774.1|	-	0.22	11.5	11.0	1.5	8.9	1.6	4.0	2	2	1	3	3	3	0	Proteins	of	100	residues	with	WXG
FlaC_arch	PF05377.6	gi|379003102|ref|YP_005258774.1|	-	0.22	11.4	25.8	1.2	9.1	0.6	5.5	2	2	3	5	5	5	0	Flagella	accessory	protein	C	(FlaC)
TBPIP	PF07106.8	gi|379003102|ref|YP_005258774.1|	-	0.24	10.9	46.0	0.075	12.5	10.6	4.1	1	1	3	4	4	4	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF972	PF06156.8	gi|379003102|ref|YP_005258774.1|	-	0.29	11.5	39.2	1.1	9.5	3.1	4.3	2	2	2	4	4	4	0	Protein	of	unknown	function	(DUF972)
GAS	PF13851.1	gi|379003102|ref|YP_005258774.1|	-	0.41	9.8	47.2	0.29	10.3	19.1	2.4	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
TMF_TATA_bd	PF12325.3	gi|379003102|ref|YP_005258774.1|	-	0.42	10.3	44.5	0.19	11.4	4.3	4.2	2	1	3	5	5	5	0	TATA	element	modulatory	factor	1	TATA	binding
AKNA	PF12443.3	gi|379003102|ref|YP_005258774.1|	-	0.47	10.4	21.4	0.89	9.5	1.7	4.1	2	2	2	4	4	3	0	AT-hook-containing	transcription	factor
COG2	PF06148.6	gi|379003102|ref|YP_005258774.1|	-	0.47	10.3	31.7	0.59	9.9	5.0	4.5	2	2	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Seryl_tRNA_N	PF02403.17	gi|379003102|ref|YP_005258774.1|	-	0.49	10.4	49.2	0.074	13.0	11.1	5.0	2	2	3	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
V_ATPase_I	PF01496.14	gi|379003102|ref|YP_005258774.1|	-	0.55	8.0	32.3	0.41	8.4	12.9	2.3	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
RmuC	PF02646.11	gi|379003102|ref|YP_005258774.1|	-	0.63	8.8	30.7	0.12	11.1	4.9	3.8	2	2	2	4	4	4	0	RmuC	family
FUSC	PF04632.7	gi|379003102|ref|YP_005258774.1|	-	0.71	8.2	7.7	2.5	6.4	3.1	2.1	2	0	0	2	2	2	0	Fusaric	acid	resistance	protein	family
NPV_P10	PF05531.7	gi|379003102|ref|YP_005258774.1|	-	0.76	10.0	23.0	0.39	10.9	4.6	4.4	2	2	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
DUF2937	PF11157.3	gi|379003102|ref|YP_005258774.1|	-	0.95	8.7	12.2	0.031	13.6	2.3	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2937)
Flagellin_C	PF00700.16	gi|379003102|ref|YP_005258774.1|	-	0.98	9.6	18.8	0.18	12.0	0.9	4.2	2	2	2	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
Mnd1	PF03962.10	gi|379003102|ref|YP_005258774.1|	-	1.1	8.8	41.1	0.19	11.3	3.5	3.7	2	2	1	3	3	3	0	Mnd1	family
APG17	PF04108.7	gi|379003102|ref|YP_005258774.1|	-	1.3	7.7	26.4	0.59	8.8	4.2	2.8	1	1	2	3	3	3	0	Autophagy	protein	Apg17
CENP-F_leu_zip	PF10473.4	gi|379003102|ref|YP_005258774.1|	-	1.8	8.3	49.3	11	5.9	20.7	3.5	1	1	1	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF812	PF05667.6	gi|379003102|ref|YP_005258774.1|	-	2.2	6.6	40.0	0.25	9.8	4.8	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF812)
DUF2408	PF10303.4	gi|379003102|ref|YP_005258774.1|	-	2.2	8.4	31.8	0.04	14.0	5.5	3.8	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2408)
Syntaxin-6_N	PF09177.6	gi|379003102|ref|YP_005258774.1|	-	2.5	8.5	32.5	1.7	9.1	6.1	4.6	2	2	2	4	4	4	0	Syntaxin	6,	N-terminal
DUF4200	PF13863.1	gi|379003102|ref|YP_005258774.1|	-	2.9	7.8	57.2	3	7.8	12.6	4.4	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF4200)
DivIVA	PF05103.8	gi|379003102|ref|YP_005258774.1|	-	3.4	7.7	44.3	2	8.4	5.5	4.5	2	2	2	4	4	4	0	DivIVA	protein
Bacillus_HBL	PF05791.6	gi|379003102|ref|YP_005258774.1|	-	3.8	6.8	26.3	0.55	9.5	6.2	3.2	1	1	2	3	3	3	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF342	PF03961.8	gi|379003102|ref|YP_005258774.1|	-	4.1	5.7	40.9	0.85	7.9	11.5	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF342)
M_domain	PF12938.2	gi|379003102|ref|YP_005258774.1|	-	4.6	6.9	23.8	0.86	9.3	1.2	3.4	2	2	1	3	3	3	0	M	domain	of	GW182
Peripla_BP_2	PF01497.13	gi|379003102|ref|YP_005258774.1|	-	5.1	6.1	10.8	0.8	8.7	1.2	3.0	2	1	1	3	3	3	0	Periplasmic	binding	protein
DUF3166	PF11365.3	gi|379003102|ref|YP_005258774.1|	-	5.5	7.5	24.9	3.3	8.2	1.7	4.2	2	2	0	3	3	3	0	Protein	of	unknown	function	(DUF3166)
STAT_alpha	PF01017.15	gi|379003102|ref|YP_005258774.1|	-	6.2	6.4	33.6	2.6	7.7	2.1	3.5	2	1	1	3	3	3	0	STAT	protein,	all-alpha	domain
HTH_19	PF12844.2	gi|379003103|ref|YP_005258775.1|	-	1.8e-08	34.3	0.0	4e-08	33.1	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|379003103|ref|YP_005258775.1|	-	1.4e-07	31.1	0.0	3.2e-07	30.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|379003103|ref|YP_005258775.1|	-	1.5e-07	31.4	0.0	3.7e-07	30.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|379003103|ref|YP_005258775.1|	-	0.0023	17.4	0.0	0.006	16.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|379003103|ref|YP_005258775.1|	-	0.088	12.6	0.0	0.19	11.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_L13e	PF01294.13	gi|379003104|ref|YP_005258776.1|	-	1.2e-08	34.5	0.4	2.3e-08	33.7	0.3	1.6	1	1	0	1	1	1	1	Ribosomal	protein	L13e
Ribosomal_L15e	PF00827.12	gi|379003104|ref|YP_005258776.1|	-	0.00034	20.1	3.6	0.0004	19.9	1.7	1.6	1	1	1	2	2	2	1	Ribosomal	L15
Ribosomal_S30	PF04758.9	gi|379003104|ref|YP_005258776.1|	-	0.75	9.5	7.2	2.7	7.8	5.0	1.9	1	1	0	1	1	1	0	Ribosomal	protein	S30
DUF3754	PF12576.3	gi|379003105|ref|YP_005258777.1|	-	0.95	9.0	6.5	0.26	10.9	2.3	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3754)
Ycf66_N	PF07444.6	gi|379003105|ref|YP_005258777.1|	-	2.5	7.8	9.9	0.097	12.4	1.1	2.4	1	1	1	2	2	2	0	Ycf66	protein	N-terminus
TFIIB	PF00382.14	gi|379003108|ref|YP_005258780.1|	-	3.5e-34	116.4	3.7	5e-18	64.6	0.3	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|379003108|ref|YP_005258780.1|	-	6.3e-17	60.6	0.5	1e-16	59.9	0.3	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
Cyclin_N	PF00134.18	gi|379003108|ref|YP_005258780.1|	-	1.4e-09	37.6	0.2	6.8e-05	22.4	0.1	2.2	2	0	0	2	2	2	2	Cyclin,	N-terminal	domain
Cyclin_C	PF02984.14	gi|379003108|ref|YP_005258780.1|	-	1.6e-06	28.0	0.0	0.003	17.4	0.0	2.5	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
Desulfoferrod_N	PF06397.7	gi|379003108|ref|YP_005258780.1|	-	0.001	18.4	5.1	0.0024	17.2	3.2	1.9	1	1	0	1	1	1	1	Desulfoferrodoxin,	N-terminal	domain
HTH_11	PF08279.7	gi|379003108|ref|YP_005258780.1|	-	0.001	18.6	0.1	1.8	8.2	0.0	3.0	3	0	0	3	3	3	2	HTH	domain
Ribosomal_S27e	PF01667.12	gi|379003108|ref|YP_005258780.1|	-	0.0074	15.7	0.5	0.014	14.9	0.4	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S27
HTH_AsnC-type	PF13404.1	gi|379003108|ref|YP_005258780.1|	-	0.016	14.7	0.0	1.4	8.5	0.0	2.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Lar_restr_allev	PF14354.1	gi|379003108|ref|YP_005258780.1|	-	0.042	14.1	0.1	0.09	13.0	0.1	1.6	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Prim_Zn_Ribbon	PF08273.7	gi|379003108|ref|YP_005258780.1|	-	0.082	12.9	0.8	0.16	12.0	0.6	1.4	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
zf-ISL3	PF14690.1	gi|379003108|ref|YP_005258780.1|	-	0.27	11.3	1.8	0.68	10.0	0.3	2.5	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
A2L_zn_ribbon	PF08792.5	gi|379003108|ref|YP_005258780.1|	-	0.28	10.6	1.6	0.5	9.8	1.1	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
DNase-RNase	PF02577.9	gi|379003109|ref|YP_005258781.1|	-	2.8e-38	130.2	0.1	3.3e-38	129.9	0.1	1.0	1	0	0	1	1	1	1	Bifunctional	nuclease
Salt_tol_Pase	PF09506.5	gi|379003109|ref|YP_005258781.1|	-	0.12	10.9	0.0	0.12	10.9	0.0	1.1	1	0	0	1	1	1	0	Glucosylglycerol-phosphate	phosphatase	(Salt_tol_Pase)
Ribosomal_S13_N	PF08069.7	gi|379003112|ref|YP_005258784.1|	-	9.4e-25	86.2	0.0	1.7e-24	85.4	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.17	gi|379003112|ref|YP_005258784.1|	-	1.2e-19	69.8	0.9	2e-19	69.1	0.7	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S15
HTHP	PF11534.3	gi|379003112|ref|YP_005258784.1|	-	0.039	14.0	0.0	0.073	13.1	0.0	1.4	1	0	0	1	1	1	0	Hexameric	tyrosine-coordinated	heme	protein	(HTHP)
RecX	PF02631.11	gi|379003112|ref|YP_005258784.1|	-	0.13	12.4	0.1	3	8.0	0.0	2.1	2	0	0	2	2	2	0	RecX	family
CMAS	PF02353.15	gi|379003113|ref|YP_005258785.1|	-	4.9e-09	35.6	0.0	7.2e-09	35.1	0.0	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
DOT1	PF08123.8	gi|379003113|ref|YP_005258785.1|	-	1e-06	28.2	0.0	1.4e-06	27.8	0.0	1.3	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_31	PF13847.1	gi|379003113|ref|YP_005258785.1|	-	3.2e-06	26.8	0.0	4.1e-06	26.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003113|ref|YP_005258785.1|	-	4.5e-06	27.2	0.0	7.8e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003113|ref|YP_005258785.1|	-	2.6e-05	24.4	0.0	4.1e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379003113|ref|YP_005258785.1|	-	7.6e-05	22.7	0.0	9.8e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|379003113|ref|YP_005258785.1|	-	0.00037	19.6	0.0	0.00052	19.1	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
PCMT	PF01135.14	gi|379003113|ref|YP_005258785.1|	-	0.00097	18.7	0.0	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_11	PF08241.7	gi|379003113|ref|YP_005258785.1|	-	0.0024	18.3	0.0	0.004	17.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Sigma70_r3	PF04539.11	gi|379003113|ref|YP_005258785.1|	-	0.0027	17.5	0.1	0.0061	16.4	0.1	1.5	1	0	0	1	1	1	1	Sigma-70	region	3
HTH_11	PF08279.7	gi|379003113|ref|YP_005258785.1|	-	0.004	16.7	0.2	0.0076	15.8	0.1	1.5	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|379003113|ref|YP_005258785.1|	-	0.0052	16.4	0.3	0.0099	15.5	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|379003113|ref|YP_005258785.1|	-	0.0058	16.0	0.3	0.015	14.7	0.2	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
DUF4423	PF14394.1	gi|379003113|ref|YP_005258785.1|	-	0.0083	15.6	0.1	0.025	14.1	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4423)
HD_4	PF13328.1	gi|379003113|ref|YP_005258785.1|	-	0.0094	15.6	0.1	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	HD	domain
HTH_Crp_2	PF13545.1	gi|379003113|ref|YP_005258785.1|	-	0.013	15.2	0.0	0.038	13.7	0.0	1.8	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379003113|ref|YP_005258785.1|	-	0.014	14.8	0.3	0.027	13.8	0.1	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
RrnaAD	PF00398.15	gi|379003113|ref|YP_005258785.1|	-	0.014	14.3	0.0	0.026	13.5	0.0	1.3	1	1	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
HTH_23	PF13384.1	gi|379003113|ref|YP_005258785.1|	-	0.023	14.3	0.1	0.058	13.0	0.1	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
FaeA	PF04703.7	gi|379003113|ref|YP_005258785.1|	-	0.038	14.1	0.0	0.066	13.3	0.0	1.4	1	0	0	1	1	1	0	FaeA-like	protein
Methyltransf_32	PF13679.1	gi|379003113|ref|YP_005258785.1|	-	0.057	13.1	0.0	0.09	12.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
HTH_27	PF13463.1	gi|379003113|ref|YP_005258785.1|	-	0.06	13.6	1.2	0.65	10.3	0.2	2.2	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
UPF0020	PF01170.13	gi|379003113|ref|YP_005258785.1|	-	0.067	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
HTH_28	PF13518.1	gi|379003113|ref|YP_005258785.1|	-	0.082	12.9	0.1	0.19	11.7	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MetW	PF07021.7	gi|379003113|ref|YP_005258785.1|	-	0.09	12.1	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Rrf2	PF02082.15	gi|379003113|ref|YP_005258785.1|	-	0.091	12.8	0.0	0.69	10.0	0.0	2.4	3	0	0	3	3	2	0	Transcriptional	regulator
HTH_5	PF01022.15	gi|379003113|ref|YP_005258785.1|	-	0.098	12.3	0.0	0.21	11.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_36	PF13730.1	gi|379003113|ref|YP_005258785.1|	-	0.098	12.7	0.0	0.18	11.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|379003113|ref|YP_005258785.1|	-	0.12	12.2	0.0	0.24	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
RPA_C	PF08784.6	gi|379003113|ref|YP_005258785.1|	-	0.16	12.3	0.0	0.27	11.6	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DS	PF01916.12	gi|379003114|ref|YP_005258786.1|	-	6.9e-68	228.9	0.0	7.8e-68	228.7	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Glycos_transf_4	PF00953.16	gi|379003115|ref|YP_005258787.1|	-	6.8e-28	97.4	14.8	6.8e-28	97.4	10.2	2.1	3	0	0	3	3	3	1	Glycosyl	transferase	family	4
Ras	PF00071.17	gi|379003117|ref|YP_005258789.1|	-	2.1e-05	23.9	0.0	3e-05	23.4	0.0	1.2	1	1	0	1	1	1	1	Ras	family
Arf	PF00025.16	gi|379003117|ref|YP_005258789.1|	-	0.011	14.9	0.0	0.011	14.9	0.0	1.1	1	0	0	1	1	1	0	ADP-ribosylation	factor	family
Miro	PF08477.8	gi|379003117|ref|YP_005258789.1|	-	0.014	15.9	0.0	0.019	15.4	0.0	1.2	1	0	0	1	1	1	0	Miro-like	protein
Dsl1_C	PF11989.3	gi|379003117|ref|YP_005258789.1|	-	0.021	14.0	0.0	0.027	13.6	0.0	1.1	1	0	0	1	1	1	0	Retrograde	transport	protein	Dsl1	C	terminal
PduV-EutP	PF10662.4	gi|379003117|ref|YP_005258789.1|	-	0.1	12.0	0.0	0.18	11.2	0.0	1.4	1	1	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
DUF2621	PF11084.3	gi|379003118|ref|YP_005258790.1|	-	0.11	12.2	0.0	0.18	11.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2621)
Hydrolase_3	PF08282.7	gi|379003119|ref|YP_005258791.1|	-	2.7e-27	95.9	0.0	6.7e-15	55.3	0.0	2.0	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|379003119|ref|YP_005258791.1|	-	3.5e-10	39.6	0.1	2.3e-07	30.3	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.2	gi|379003119|ref|YP_005258791.1|	-	1.9e-07	31.4	1.1	2.2e-05	24.7	0.0	2.8	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379003119|ref|YP_005258791.1|	-	1.7e-06	28.6	1.4	0.0045	17.4	0.1	3.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|379003119|ref|YP_005258791.1|	-	0.0075	16.1	0.0	0.024	14.5	0.0	1.8	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.11	gi|379003119|ref|YP_005258791.1|	-	0.075	11.9	0.0	0.61	8.9	0.0	2.0	2	0	0	2	2	2	0	Trehalose-phosphatase
Pribosyltran	PF00156.22	gi|379003120|ref|YP_005258792.1|	-	1.5e-18	66.7	0.4	2.1e-18	66.2	0.3	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|379003120|ref|YP_005258792.1|	-	0.00085	18.5	0.1	0.0011	18.1	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Resolvase	PF00239.16	gi|379003121|ref|YP_005258793.1|	-	2.4e-32	111.7	0.5	3.2e-32	111.3	0.4	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
Sigma70_r4	PF04545.11	gi|379003121|ref|YP_005258793.1|	-	0.00033	19.8	1.8	0.012	14.8	0.0	2.9	3	0	0	3	3	3	1	Sigma-70,	region	4
Complex1_LYR	PF05347.10	gi|379003121|ref|YP_005258793.1|	-	0.012	15.3	0.3	0.045	13.5	0.0	2.1	2	0	0	2	2	2	0	Complex	1	protein	(LYR	family)
zf-ZPR1	PF03367.8	gi|379003121|ref|YP_005258793.1|	-	0.054	12.6	0.9	0.1	11.7	0.6	1.4	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
HTH_28	PF13518.1	gi|379003121|ref|YP_005258793.1|	-	0.071	13.1	0.0	0.23	11.5	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Lar_restr_allev	PF14354.1	gi|379003121|ref|YP_005258793.1|	-	0.093	13.0	0.8	0.19	12.0	0.5	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-TFIIB	PF13453.1	gi|379003121|ref|YP_005258793.1|	-	0.14	11.3	0.6	0.33	10.1	0.4	1.7	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
zf-ribbon_3	PF13248.1	gi|379003121|ref|YP_005258793.1|	-	0.37	10.0	4.2	0.47	9.7	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379003121|ref|YP_005258793.1|	-	1.6	8.4	4.6	1.6	8.4	1.4	2.3	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF2339	PF10101.4	gi|379003123|ref|YP_005258795.1|	-	0.022	13.0	3.4	0.024	12.9	2.3	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2339)
Flavi_NS2B	PF01002.14	gi|379003123|ref|YP_005258795.1|	-	0.31	10.6	2.6	0.32	10.5	1.4	1.4	1	1	0	1	1	1	0	Flavivirus	non-structural	protein	NS2B
UPF0016	PF01169.14	gi|379003123|ref|YP_005258795.1|	-	1.3	9.2	4.4	0.93	9.6	1.9	1.7	1	1	1	2	2	2	0	Uncharacterized	protein	family	UPF0016
YbhQ	PF11076.3	gi|379003123|ref|YP_005258795.1|	-	2.8	7.5	5.1	5.4	6.6	2.6	2.1	1	1	1	2	2	2	0	Putative	inner	membrane	protein	YbhQ
Lon_C	PF05362.8	gi|379003124|ref|YP_005258796.1|	-	4.2e-12	45.7	3.5	1.4e-11	44.1	2.4	1.8	1	1	0	1	1	1	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
ChlI	PF13541.1	gi|379003124|ref|YP_005258796.1|	-	0.0012	18.3	0.1	0.0026	17.2	0.0	1.6	1	0	0	1	1	1	1	Subunit	ChlI	of	Mg-chelatase
Birna_VP4	PF01768.11	gi|379003124|ref|YP_005258796.1|	-	0.019	14.0	0.6	0.11	11.5	0.2	2.2	1	1	1	2	2	2	0	Birnavirus	VP4	protein
SIR2	PF02146.12	gi|379003125|ref|YP_005258797.1|	-	9.7e-56	188.3	0.0	1.2e-55	188.0	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
TPP_enzyme_M	PF00205.17	gi|379003125|ref|YP_005258797.1|	-	0.0022	17.7	0.0	0.096	12.4	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DNA_ligase_OB	PF03120.11	gi|379003125|ref|YP_005258797.1|	-	0.0049	16.4	0.7	0.042	13.5	0.5	2.2	1	1	0	1	1	1	1	NAD-dependent	DNA	ligase	OB-fold	domain
Zn-ribbon_8	PF09723.5	gi|379003125|ref|YP_005258797.1|	-	0.013	15.4	0.4	0.024	14.5	0.3	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_3	PF13878.1	gi|379003125|ref|YP_005258797.1|	-	0.35	10.4	1.0	0.5	9.9	0.0	1.7	2	0	0	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
ADK_lid	PF05191.9	gi|379003125|ref|YP_005258797.1|	-	0.42	10.3	2.6	1.1	9.0	1.8	1.7	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zinc_ribbon_5	PF13719.1	gi|379003125|ref|YP_005258797.1|	-	0.43	10.1	3.5	1.2	8.7	2.4	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003125|ref|YP_005258797.1|	-	1.9	8.2	4.1	6.2	6.5	2.8	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF123	PF01986.11	gi|379003126|ref|YP_005258798.1|	-	3.9e-19	68.6	0.0	5e-19	68.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
Lactamase_B	PF00753.22	gi|379003127|ref|YP_005258799.1|	-	3.5e-07	30.0	0.4	4.8e-07	29.6	0.3	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
ADH_zinc_N	PF00107.21	gi|379003127|ref|YP_005258799.1|	-	0.0015	18.1	0.1	0.14	11.7	0.0	2.2	2	0	0	2	2	2	2	Zinc-binding	dehydrogenase
Rep_fac-A_C	PF08646.5	gi|379003128|ref|YP_005258800.1|	-	0.034	13.8	0.2	0.049	13.3	0.1	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
Dot_icm_IcmQ	PF09475.5	gi|379003128|ref|YP_005258800.1|	-	0.11	11.6	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	Dot/Icm	secretion	system	protein	(dot_icm_IcmQ)
CTP_synth_N	PF06418.9	gi|379003129|ref|YP_005258801.1|	-	1.4e-121	404.7	0.0	1.9e-121	404.4	0.0	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|379003129|ref|YP_005258801.1|	-	6.1e-47	159.5	0.0	1e-46	158.8	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|379003129|ref|YP_005258801.1|	-	6.2e-09	35.6	0.0	6.4e-08	32.2	0.0	2.3	2	1	0	2	2	2	1	Peptidase	C26
CbiA	PF01656.18	gi|379003129|ref|YP_005258801.1|	-	1.1e-05	24.9	0.0	1.7e-05	24.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Oxidored_q4	PF00507.14	gi|379003130|ref|YP_005258802.1|	-	0.0013	18.5	1.9	0.003	17.3	0.6	1.8	1	1	1	2	2	2	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
ABC2_membrane_4	PF12730.2	gi|379003130|ref|YP_005258802.1|	-	0.0094	15.1	3.0	0.0099	15.0	2.1	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
DUF3816	PF12822.2	gi|379003130|ref|YP_005258802.1|	-	0.23	11.3	6.7	0.054	13.3	1.3	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3816)
EamA	PF00892.15	gi|379003131|ref|YP_005258803.1|	-	2.5e-07	30.7	23.7	3.7e-05	23.7	5.1	3.1	1	1	2	3	3	3	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|379003131|ref|YP_005258803.1|	-	0.0025	17.9	1.8	0.0025	17.9	1.3	3.5	2	1	1	3	3	3	1	Multidrug	resistance	efflux	transporter
SurE	PF01975.12	gi|379003132|ref|YP_005258804.1|	-	1.1e-41	142.3	0.0	1.3e-41	142.1	0.0	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
NusB	PF01029.13	gi|379003133|ref|YP_005258805.1|	-	0.031	14.2	0.1	0.08	12.9	0.1	1.6	1	1	0	1	1	1	0	NusB	family
FANCI_S4	PF14678.1	gi|379003133|ref|YP_005258805.1|	-	0.048	12.7	0.3	0.13	11.3	0.2	1.7	1	1	0	1	1	1	0	FANCI	solenoid	4
Syntaxin-6_N	PF09177.6	gi|379003133|ref|YP_005258805.1|	-	0.072	13.5	0.1	0.16	12.4	0.0	1.7	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Helicase_C_2	PF13307.1	gi|379003134|ref|YP_005258806.1|	-	1.1e-10	41.7	0.0	2.3e-10	40.7	0.0	1.5	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|379003134|ref|YP_005258806.1|	-	2.6e-07	30.1	0.0	5.2e-07	29.2	0.0	1.5	1	0	0	1	1	1	1	DEAD_2
DEAD	PF00270.24	gi|379003134|ref|YP_005258806.1|	-	0.0037	16.7	0.0	0.18	11.2	0.0	2.5	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
AAA_19	PF13245.1	gi|379003134|ref|YP_005258806.1|	-	0.011	15.5	0.0	0.077	12.7	0.0	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
Lsm_C	PF14894.1	gi|379003135|ref|YP_005258807.1|	-	4.9e-23	80.4	0.3	1.1e-22	79.3	0.2	1.5	1	0	0	1	1	1	1	Lsm	C-terminal
LSM	PF01423.17	gi|379003135|ref|YP_005258807.1|	-	3e-12	45.8	0.8	4.1e-12	45.4	0.5	1.4	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|379003135|ref|YP_005258807.1|	-	3.5e-11	42.8	0.2	1.5e-10	40.8	0.0	1.9	2	0	0	2	2	2	1	Ataxin	2	SM	domain
Gemin6	PF06372.7	gi|379003135|ref|YP_005258807.1|	-	0.082	12.2	0.1	0.25	10.6	0.0	1.7	1	1	1	2	2	2	0	Gemin6	protein
Kdo	PF06293.9	gi|379003136|ref|YP_005258808.1|	-	6.2e-13	48.2	0.0	7.7e-13	47.9	0.0	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
RIO1	PF01163.17	gi|379003136|ref|YP_005258808.1|	-	3.9e-12	45.9	0.0	5.5e-12	45.4	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|379003136|ref|YP_005258808.1|	-	4.2e-09	36.4	2.6	0.00073	19.3	0.3	2.3	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|379003136|ref|YP_005258808.1|	-	1.8e-08	33.8	0.0	2.6e-08	33.3	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|379003136|ref|YP_005258808.1|	-	0.00013	21.1	0.0	0.00033	19.8	0.0	1.6	1	1	0	1	1	1	1	Protein	tyrosine	kinase
WaaY	PF06176.6	gi|379003136|ref|YP_005258808.1|	-	0.0022	17.2	0.0	0.0065	15.7	0.0	1.6	1	1	1	2	2	2	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Choline_kinase	PF01633.15	gi|379003136|ref|YP_005258808.1|	-	0.071	12.6	0.0	0.24	10.9	0.0	1.7	1	1	1	2	2	2	0	Choline/ethanolamine	kinase
Radical_SAM	PF04055.16	gi|379003137|ref|YP_005258809.1|	-	1.3e-14	54.6	0.0	1.9e-14	54.1	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379003137|ref|YP_005258809.1|	-	7.1e-10	39.1	0.0	1.2e-09	38.3	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|379003137|ref|YP_005258809.1|	-	2.7e-07	30.6	0.0	5.1e-07	29.7	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-CSL	PF05207.8	gi|379003140|ref|YP_005258812.1|	-	0.0016	17.9	0.2	0.003	17.0	0.2	1.4	1	0	0	1	1	1	1	CSL	zinc	finger
DUF1610	PF07754.6	gi|379003140|ref|YP_005258812.1|	-	0.1	12.7	0.2	0.1	12.7	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DHH	PF01368.15	gi|379003141|ref|YP_005258813.1|	-	2.3e-08	33.8	0.0	4.1e-08	32.9	0.0	1.4	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|379003141|ref|YP_005258813.1|	-	1.9e-06	27.4	0.2	4.4e-06	26.3	0.2	1.6	1	0	0	1	1	1	1	DHHA1	domain
TPM	PF04536.9	gi|379003142|ref|YP_005258814.1|	-	0.11	12.3	0.1	0.12	12.2	0.1	1.1	1	0	0	1	1	1	0	TLP18.3,	Psb32	and	MOLO-1	founding	proteins	of	phosphatase
Prefoldin_2	PF01920.15	gi|379003143|ref|YP_005258815.1|	-	3e-26	91.2	12.3	3.8e-26	90.9	8.5	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
DUF2458	PF10454.4	gi|379003143|ref|YP_005258815.1|	-	0.003	17.4	3.4	0.0041	17.0	2.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2458)
DUF4510	PF14971.1	gi|379003143|ref|YP_005258815.1|	-	0.012	15.7	1.6	0.012	15.7	1.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4510)
CENP-F_leu_zip	PF10473.4	gi|379003143|ref|YP_005258815.1|	-	0.013	15.3	10.4	0.35	10.7	0.1	2.0	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TACC	PF05010.9	gi|379003143|ref|YP_005258815.1|	-	0.018	14.7	4.5	0.077	12.7	3.1	1.8	1	1	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC)
Cor1	PF04803.7	gi|379003143|ref|YP_005258815.1|	-	0.024	14.4	8.9	0.038	13.7	6.1	1.3	1	1	0	1	1	1	0	Cor1/Xlr/Xmr	conserved	region
Fzo_mitofusin	PF04799.8	gi|379003143|ref|YP_005258815.1|	-	0.035	13.4	0.4	0.035	13.4	0.3	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
Rootletin	PF15035.1	gi|379003143|ref|YP_005258815.1|	-	0.041	13.8	8.0	0.058	13.3	5.6	1.2	1	0	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
Nup54	PF13874.1	gi|379003143|ref|YP_005258815.1|	-	0.047	13.3	5.3	0.26	10.9	0.8	2.2	2	0	0	2	2	2	0	Nucleoporin	complex	subunit	54
MscS_porin	PF12795.2	gi|379003143|ref|YP_005258815.1|	-	0.053	12.8	11.3	0.41	9.9	2.4	2.0	2	0	0	2	2	2	0	Mechanosensitive	ion	channel	porin	domain
TMCO5	PF14992.1	gi|379003143|ref|YP_005258815.1|	-	0.054	12.6	6.8	0.069	12.2	4.7	1.1	1	0	0	1	1	1	0	TMCO5	family
DUF3584	PF12128.3	gi|379003143|ref|YP_005258815.1|	-	0.06	10.6	5.2	0.08	10.2	3.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Myosin_tail_1	PF01576.14	gi|379003143|ref|YP_005258815.1|	-	0.062	11.0	9.2	0.076	10.7	6.4	1.0	1	0	0	1	1	1	0	Myosin	tail
Enkurin	PF13864.1	gi|379003143|ref|YP_005258815.1|	-	0.068	13.3	1.3	0.068	13.3	0.9	2.7	2	2	0	2	2	2	0	Calmodulin-binding
Prominin	PF05478.6	gi|379003143|ref|YP_005258815.1|	-	0.11	10.0	1.4	0.13	9.7	1.0	1.1	1	0	0	1	1	1	0	Prominin
Peptidase_M41	PF01434.13	gi|379003143|ref|YP_005258815.1|	-	0.11	11.9	0.9	0.14	11.6	0.6	1.2	1	0	0	1	1	1	0	Peptidase	family	M41
Tropomyosin	PF00261.15	gi|379003143|ref|YP_005258815.1|	-	0.13	11.2	9.5	1.7	7.6	2.6	2.0	2	0	0	2	2	2	0	Tropomyosin
BLOC1_2	PF10046.4	gi|379003143|ref|YP_005258815.1|	-	0.14	12.2	4.4	4.7	7.4	0.2	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Tropomyosin_1	PF12718.2	gi|379003143|ref|YP_005258815.1|	-	0.15	11.9	10.1	1.4	8.7	2.6	2.0	2	0	0	2	2	2	0	Tropomyosin	like
Prefoldin	PF02996.12	gi|379003143|ref|YP_005258815.1|	-	0.17	11.5	9.4	0.29	10.7	1.2	2.3	1	1	1	2	2	2	0	Prefoldin	subunit
Bacillus_HBL	PF05791.6	gi|379003143|ref|YP_005258815.1|	-	0.19	11.0	6.3	0.3	10.4	0.6	2.0	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF2408	PF10303.4	gi|379003143|ref|YP_005258815.1|	-	0.21	11.7	5.5	1.4	9.0	3.9	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
Fmp27_WPPW	PF10359.4	gi|379003143|ref|YP_005258815.1|	-	0.21	9.9	3.5	0.25	9.6	2.5	1.0	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
PilJ	PF13675.1	gi|379003143|ref|YP_005258815.1|	-	0.23	11.7	5.7	6.4	7.1	0.7	2.4	1	1	0	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Cauli_AT	PF03233.8	gi|379003143|ref|YP_005258815.1|	-	0.24	11.1	7.1	1.5	8.5	0.4	2.0	1	1	1	2	2	2	0	Aphid	transmission	protein
IFT57	PF10498.4	gi|379003143|ref|YP_005258815.1|	-	0.24	10.1	8.1	0.99	8.0	0.5	2.0	1	1	0	2	2	2	0	Intra-flagellar	transport	protein	57
PspA_IM30	PF04012.7	gi|379003143|ref|YP_005258815.1|	-	0.24	10.7	8.7	0.35	10.2	6.0	1.2	1	1	0	1	1	1	0	PspA/IM30	family
Gon7	PF08738.5	gi|379003143|ref|YP_005258815.1|	-	0.34	10.9	5.0	0.53	10.3	0.8	2.4	2	1	0	2	2	2	0	Gon7	family
Snf7	PF03357.16	gi|379003143|ref|YP_005258815.1|	-	0.37	10.1	8.5	3.9	6.8	2.9	2.2	2	0	0	2	2	2	0	Snf7
Mnd1	PF03962.10	gi|379003143|ref|YP_005258815.1|	-	0.39	10.3	5.3	0.55	9.8	3.7	1.2	1	0	0	1	1	1	0	Mnd1	family
DinB_2	PF12867.2	gi|379003143|ref|YP_005258815.1|	-	0.42	10.9	3.2	29	5.0	0.4	2.9	1	1	1	2	2	2	0	DinB	superfamily
DUF964	PF06133.6	gi|379003143|ref|YP_005258815.1|	-	0.65	10.0	11.5	1.4	8.9	2.3	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF964)
TPR_MLP1_2	PF07926.7	gi|379003143|ref|YP_005258815.1|	-	0.65	9.7	11.9	4.8	6.9	8.2	2.0	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
DUF848	PF05852.6	gi|379003143|ref|YP_005258815.1|	-	0.71	9.7	10.0	5.8	6.7	6.9	2.0	1	1	0	1	1	1	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
GAS	PF13851.1	gi|379003143|ref|YP_005258815.1|	-	0.79	8.8	14.0	0.76	8.9	4.0	2.0	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
FlxA	PF14282.1	gi|379003143|ref|YP_005258815.1|	-	0.8	9.6	8.4	0.11	12.4	0.4	2.1	2	0	0	2	2	2	0	FlxA-like	protein
AKNA	PF12443.3	gi|379003143|ref|YP_005258815.1|	-	0.81	9.7	6.2	5.1	7.1	3.7	2.1	1	1	1	2	2	2	0	AT-hook-containing	transcription	factor
Atg14	PF10186.4	gi|379003143|ref|YP_005258815.1|	-	0.83	8.5	7.1	0.97	8.3	4.9	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
EzrA	PF06160.7	gi|379003143|ref|YP_005258815.1|	-	0.87	7.6	9.4	3.2	5.8	6.5	1.7	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
XkdW	PF09636.5	gi|379003143|ref|YP_005258815.1|	-	0.93	9.3	4.0	1.1	9.1	0.4	2.2	2	0	0	2	2	2	0	XkdW	protein
DUF948	PF06103.6	gi|379003143|ref|YP_005258815.1|	-	1.2	9.0	3.9	1.7	8.5	0.9	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF641	PF04859.7	gi|379003143|ref|YP_005258815.1|	-	1.5	8.5	6.4	3.2	7.5	4.4	1.5	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
SbcD_C	PF12320.3	gi|379003143|ref|YP_005258815.1|	-	2.1	8.4	8.3	5.6	7.0	4.3	2.0	1	1	1	2	2	2	0	Type	5	capsule	protein	repressor	C-terminal	domain
CDC37_N	PF03234.9	gi|379003143|ref|YP_005258815.1|	-	2.2	8.5	7.5	4.2	7.6	5.2	1.4	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF4558	PF15104.1	gi|379003143|ref|YP_005258815.1|	-	2.8	7.9	7.0	2.3	8.2	0.2	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4558)
DUF4559	PF15112.1	gi|379003143|ref|YP_005258815.1|	-	3.2	6.8	6.5	5.5	6.0	4.5	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
FliD_N	PF02465.13	gi|379003143|ref|YP_005258815.1|	-	3.3	8.1	4.9	5	7.5	0.9	2.1	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
DivIC	PF04977.10	gi|379003143|ref|YP_005258815.1|	-	3.4	7.2	15.0	2.2	7.8	1.4	2.6	2	1	1	3	3	3	0	Septum	formation	initiator
DUF3086	PF11285.3	gi|379003143|ref|YP_005258815.1|	-	3.7	6.2	10.0	0.53	9.0	2.1	1.9	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3086)
DUF1640	PF07798.6	gi|379003143|ref|YP_005258815.1|	-	3.9	7.4	9.4	10	6.1	6.5	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF4140	PF13600.1	gi|379003143|ref|YP_005258815.1|	-	4.2	7.8	11.5	5.2	7.5	2.7	2.5	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF4515	PF14988.1	gi|379003143|ref|YP_005258815.1|	-	4.4	6.9	14.0	17	5.0	6.7	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4515)
IncA	PF04156.9	gi|379003143|ref|YP_005258815.1|	-	5.5	6.5	14.7	87	2.6	9.5	2.0	1	1	0	1	1	1	0	IncA	protein
NTR2	PF15458.1	gi|379003143|ref|YP_005258815.1|	-	6.6	5.9	11.7	8	5.6	2.5	2.0	2	0	0	2	2	2	0	Nineteen	complex-related	protein	2
Occludin_ELL	PF07303.8	gi|379003143|ref|YP_005258815.1|	-	6.9	7.4	6.7	6.9	7.4	2.3	2.1	1	1	1	2	2	2	0	Occludin	homology	domain
bZIP_1	PF00170.16	gi|379003143|ref|YP_005258815.1|	-	7.6	6.5	15.9	1.1	9.2	4.4	2.6	2	1	0	2	2	2	0	bZIP	transcription	factor
Snapin_Pallidin	PF14712.1	gi|379003143|ref|YP_005258815.1|	-	8.5	6.7	10.7	13	6.2	0.8	2.3	2	0	0	2	2	2	0	Snapin/Pallidin
TBPIP	PF07106.8	gi|379003143|ref|YP_005258815.1|	-	8.9	5.8	13.0	5.6	6.4	2.9	2.0	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF724	PF05266.9	gi|379003143|ref|YP_005258815.1|	-	9.7	5.7	9.9	22	4.5	6.8	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
Brix	PF04427.13	gi|379003145|ref|YP_005258817.1|	-	3e-10	40.0	0.0	4e-10	39.6	0.0	1.2	1	0	0	1	1	1	1	Brix	domain
Ribosomal_L37ae	PF01780.14	gi|379003146|ref|YP_005258818.1|	-	2.1e-31	107.6	1.1	2.4e-31	107.4	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
UPF0547	PF10571.4	gi|379003146|ref|YP_005258818.1|	-	4.3e-05	23.1	1.7	8.3e-05	22.1	1.2	1.4	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|379003146|ref|YP_005258818.1|	-	0.0032	17.0	0.6	0.0051	16.4	0.4	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003146|ref|YP_005258818.1|	-	0.0073	16.0	2.2	0.0073	16.0	1.5	1.7	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|379003146|ref|YP_005258818.1|	-	0.011	15.9	1.4	1.7	9.0	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
IBR	PF01485.16	gi|379003146|ref|YP_005258818.1|	-	0.012	15.4	0.1	0.018	14.8	0.1	1.2	1	0	0	1	1	1	0	IBR	domain
zf-C2H2_4	PF13894.1	gi|379003146|ref|YP_005258818.1|	-	0.024	14.9	1.9	0.27	11.6	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_5	PF13719.1	gi|379003146|ref|YP_005258818.1|	-	0.031	13.8	3.1	2	8.0	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1610	PF07754.6	gi|379003146|ref|YP_005258818.1|	-	0.039	14.0	5.2	0.41	10.8	0.3	2.9	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
zf-ribbon_3	PF13248.1	gi|379003146|ref|YP_005258818.1|	-	0.045	12.9	1.5	1.8	7.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|379003146|ref|YP_005258818.1|	-	0.047	13.3	0.2	0.07	12.8	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|379003146|ref|YP_005258818.1|	-	0.058	13.4	1.2	4.5	7.3	0.0	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn-ribbon_8	PF09723.5	gi|379003146|ref|YP_005258818.1|	-	0.061	13.2	2.0	3.3	7.7	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003146|ref|YP_005258818.1|	-	0.079	12.6	3.6	3.1	7.5	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_4	PF14570.1	gi|379003146|ref|YP_005258818.1|	-	0.11	12.1	1.5	0.81	9.3	0.1	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
Rubredoxin	PF00301.15	gi|379003146|ref|YP_005258818.1|	-	0.14	12.0	2.4	1.3	8.9	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin
zf-tcix	PF14952.1	gi|379003146|ref|YP_005258818.1|	-	0.29	10.4	4.4	0.73	9.2	0.1	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF2296	PF10058.4	gi|379003146|ref|YP_005258818.1|	-	0.68	9.7	3.5	19	5.0	2.5	2.2	1	1	1	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-C2H2	PF00096.21	gi|379003146|ref|YP_005258818.1|	-	0.72	10.3	3.0	2.7	8.4	0.3	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF4379	PF14311.1	gi|379003146|ref|YP_005258818.1|	-	0.93	9.3	8.4	3.1	7.6	0.1	3.2	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4379)
zf-CCHC_5	PF14787.1	gi|379003146|ref|YP_005258818.1|	-	2.2	7.8	7.3	1.8	8.1	0.2	2.5	3	0	0	3	3	3	0	GAG-polyprotein	viral	zinc-finger
DNA_ligase_ZBD	PF03119.11	gi|379003146|ref|YP_005258818.1|	-	3.1	7.5	5.2	5.1	6.8	0.2	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-TFIIB	PF13453.1	gi|379003146|ref|YP_005258818.1|	-	3.3	6.9	7.8	23	4.3	5.3	2.3	1	1	1	2	2	2	0	Transcription	factor	zinc-finger
RNase_PH	PF01138.16	gi|379003147|ref|YP_005258819.1|	-	9.2e-27	93.9	0.0	1.7e-26	93.0	0.0	1.4	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|379003147|ref|YP_005258819.1|	-	1.7e-09	37.4	0.0	3.4e-09	36.5	0.0	1.6	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
DASH_Dad3	PF08656.5	gi|379003147|ref|YP_005258819.1|	-	0.12	12.0	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	DASH	complex	subunit	Dad3
RNase_PH	PF01138.16	gi|379003148|ref|YP_005258820.1|	-	7e-36	123.4	0.0	8.9e-36	123.1	0.0	1.1	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|379003148|ref|YP_005258820.1|	-	6.8e-15	54.7	0.2	1.5e-14	53.6	0.0	1.7	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
KH_1	PF00013.24	gi|379003149|ref|YP_005258821.1|	-	7.5e-06	25.4	0.2	2e-05	24.1	0.1	1.8	1	1	1	2	2	2	1	KH	domain
S1	PF00575.18	gi|379003149|ref|YP_005258821.1|	-	1.1e-05	25.3	3.0	1.6e-05	24.9	0.1	2.4	2	1	0	2	2	2	1	S1	RNA	binding	domain
KH_2	PF07650.12	gi|379003149|ref|YP_005258821.1|	-	0.042	13.4	0.9	0.14	11.7	0.6	1.9	1	1	0	1	1	1	0	KH	domain
KH_4	PF13083.1	gi|379003149|ref|YP_005258821.1|	-	0.073	12.7	0.1	0.3	10.7	0.1	2.1	1	1	0	1	1	1	0	KH	domain
SBDS_C	PF09377.5	gi|379003150|ref|YP_005258822.1|	-	2.6e-26	91.7	1.5	4e-26	91.1	1.0	1.3	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
SBDS	PF01172.13	gi|379003150|ref|YP_005258822.1|	-	6.4e-26	89.9	0.1	1.4e-25	88.9	0.1	1.6	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
DUF1949	PF09186.6	gi|379003150|ref|YP_005258822.1|	-	0.1	12.1	0.0	0.54	9.8	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1949)
Aldolase_2	PF10120.4	gi|379003151|ref|YP_005258823.1|	-	8.9e-24	83.7	0.4	1.7e-23	82.8	0.3	1.5	1	1	0	1	1	1	1	Putative	aldolase
HTH_1	PF00126.22	gi|379003151|ref|YP_005258823.1|	-	0.00014	21.4	0.1	0.00032	20.3	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_37	PF13744.1	gi|379003151|ref|YP_005258823.1|	-	0.00023	20.8	0.0	0.00044	19.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|379003151|ref|YP_005258823.1|	-	0.00034	20.3	0.1	0.0012	18.6	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix
HTH_23	PF13384.1	gi|379003151|ref|YP_005258823.1|	-	0.032	13.8	0.0	0.16	11.6	0.0	2.2	3	0	0	3	3	3	0	Homeodomain-like	domain
HTH_38	PF13936.1	gi|379003151|ref|YP_005258823.1|	-	0.07	12.7	0.0	0.43	10.1	0.0	2.3	3	0	0	3	3	3	0	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|379003151|ref|YP_005258823.1|	-	0.077	12.3	0.0	0.19	11.0	0.0	1.7	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_5	PF01022.15	gi|379003151|ref|YP_005258823.1|	-	0.089	12.4	0.1	3.3	7.4	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|379003151|ref|YP_005258823.1|	-	0.14	11.5	0.0	0.32	10.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_22	PF13309.1	gi|379003151|ref|YP_005258823.1|	-	0.15	11.8	0.4	17	5.2	0.0	3.2	3	0	0	3	3	3	0	HTH	domain
RNA_binding	PF01877.12	gi|379003154|ref|YP_005258826.1|	-	8.3e-28	96.8	0.3	1.2e-27	96.3	0.2	1.2	1	0	0	1	1	1	1	RNA	binding
RRM_3	PF08777.6	gi|379003154|ref|YP_005258826.1|	-	0.12	12.2	0.0	0.19	11.6	0.0	1.4	1	0	0	1	1	1	0	RNA	binding	motif
AsnC_trans_reg	PF01037.16	gi|379003154|ref|YP_005258826.1|	-	0.15	11.8	3.0	0.39	10.4	0.7	2.4	2	1	0	2	2	2	0	AsnC	family
DUF2110	PF09883.4	gi|379003155|ref|YP_005258827.1|	-	0.016	14.8	0.0	0.016	14.8	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2110)
B9-C2	PF07162.6	gi|379003155|ref|YP_005258827.1|	-	0.14	11.9	0.0	0.17	11.6	0.0	1.1	1	0	0	1	1	1	0	Ciliary	basal	body-associated,	B9	protein
Proteasome	PF00227.21	gi|379003156|ref|YP_005258828.1|	-	3.7e-57	192.6	0.2	8.1e-57	191.5	0.0	1.7	2	1	1	3	3	3	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|379003156|ref|YP_005258828.1|	-	1.5e-13	49.7	0.1	4.2e-13	48.3	0.1	1.8	1	0	0	1	1	1	1	Proteasome	subunit	A	N-terminal	signature
Topo-VIb_trans	PF09239.6	gi|379003157|ref|YP_005258829.1|	-	1.2e-59	200.4	0.0	1.9e-59	199.7	0.0	1.3	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c	PF02518.21	gi|379003157|ref|YP_005258829.1|	-	8.3e-14	51.2	0.0	1.8e-13	50.1	0.0	1.6	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_3	PF13589.1	gi|379003157|ref|YP_005258829.1|	-	2e-10	40.4	0.0	4.4e-10	39.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
TP6A_N	PF04406.9	gi|379003158|ref|YP_005258830.1|	-	3.7e-24	84.1	0.0	6.4e-24	83.4	0.0	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
DUF2399	PF09664.5	gi|379003158|ref|YP_005258830.1|	-	0.0013	18.6	0.0	0.0025	17.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	C-terminus	(DUF2399)
DUF2868	PF11067.3	gi|379003158|ref|YP_005258830.1|	-	0.043	12.9	0.0	0.055	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2868)
PhoU	PF01895.14	gi|379003159|ref|YP_005258831.1|	-	3.3e-18	65.8	5.6	3.3e-18	65.8	3.9	2.5	3	0	0	3	3	3	1	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|379003159|ref|YP_005258831.1|	-	5.4e-10	38.7	0.2	1.8e-09	37.1	0.2	2.0	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
TOBE	PF03459.12	gi|379003159|ref|YP_005258831.1|	-	0.015	15.3	0.4	0.14	12.2	0.1	2.4	2	0	0	2	2	2	0	TOBE	domain
eIF-1a	PF01176.14	gi|379003159|ref|YP_005258831.1|	-	0.068	12.5	0.0	0.45	9.9	0.0	2.3	2	0	0	2	2	2	0	Translation	initiation	factor	1A	/	IF-1
hSH3	PF14603.1	gi|379003159|ref|YP_005258831.1|	-	0.13	12.2	0.0	0.25	11.3	0.0	1.5	1	0	0	1	1	1	0	Helically-extended	SH3	domain
Methyltransf_26	PF13659.1	gi|379003160|ref|YP_005258832.1|	-	6.3e-05	22.9	0.3	0.00013	21.9	0.2	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|379003160|ref|YP_005258832.1|	-	0.00045	19.4	0.2	0.00059	19.0	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
RrnaAD	PF00398.15	gi|379003160|ref|YP_005258832.1|	-	0.0012	17.8	0.0	0.0015	17.6	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|379003160|ref|YP_005258832.1|	-	0.027	14.9	0.1	0.062	13.7	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379003160|ref|YP_005258832.1|	-	0.12	12.1	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|379003160|ref|YP_005258832.1|	-	0.18	11.1	0.1	0.23	10.8	0.1	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
HTH_20	PF12840.2	gi|379003161|ref|YP_005258833.1|	-	1.3e-06	28.1	0.3	2.8e-06	27.0	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379003161|ref|YP_005258833.1|	-	0.00016	21.2	0.1	0.00031	20.3	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|379003161|ref|YP_005258833.1|	-	0.0038	16.5	0.0	0.0081	15.5	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|379003161|ref|YP_005258833.1|	-	0.0058	16.3	0.1	0.013	15.2	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|379003161|ref|YP_005258833.1|	-	0.018	14.6	0.1	0.034	13.7	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
HTH_27	PF13463.1	gi|379003161|ref|YP_005258833.1|	-	0.046	14.0	0.1	0.083	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
AAA_assoc_C	PF09821.4	gi|379003161|ref|YP_005258833.1|	-	0.065	13.5	0.1	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
DUF3147	PF11345.3	gi|379003161|ref|YP_005258833.1|	-	0.086	12.8	7.1	0.038	13.9	1.9	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3147)
MarR_2	PF12802.2	gi|379003161|ref|YP_005258833.1|	-	0.12	12.1	0.2	0.3	10.7	0.1	1.6	1	0	0	1	1	1	0	MarR	family
HTH_34	PF13601.1	gi|379003161|ref|YP_005258833.1|	-	0.13	12.3	0.0	0.22	11.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Alba	PF01918.16	gi|379003167|ref|YP_005258839.1|	-	1.2e-13	50.4	1.2	1.9e-13	49.8	0.9	1.3	1	0	0	1	1	1	1	Alba
Rpp20	PF12328.3	gi|379003167|ref|YP_005258839.1|	-	0.025	14.2	1.4	0.035	13.7	0.9	1.5	1	1	0	1	1	1	0	Rpp20	subunit	of	nuclear	RNase	MRP	and	P
UbiD	PF01977.11	gi|379003168|ref|YP_005258840.1|	-	5.6e-89	298.4	0.0	6.9e-89	298.1	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
Ndc80_HEC	PF03801.8	gi|379003168|ref|YP_005258840.1|	-	0.012	15.0	0.0	0.023	14.1	0.0	1.4	1	0	0	1	1	1	0	HEC/Ndc80p	family
DUF521	PF04412.8	gi|379003169|ref|YP_005258841.1|	-	1.8e-72	244.1	0.0	2.2e-72	243.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
Glyco_trans_4_4	PF13579.1	gi|379003169|ref|YP_005258841.1|	-	0.0045	17.1	0.2	0.06	13.4	0.1	2.6	1	1	1	2	2	2	1	Glycosyl	transferase	4-like	domain
ADH_zinc_N	PF00107.21	gi|379003169|ref|YP_005258841.1|	-	0.092	12.2	0.1	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
DUF126	PF01989.11	gi|379003170|ref|YP_005258842.1|	-	2.6e-21	75.0	0.1	3.6e-21	74.6	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF126
DUF1886	PF09171.5	gi|379003172|ref|YP_005258844.1|	-	5.1e-89	297.5	0.0	5.8e-89	297.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1886)
DNA_primase_lrg	PF04104.9	gi|379003173|ref|YP_005258845.1|	-	4e-36	124.6	0.0	8.1e-36	123.6	0.0	1.5	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DSBA	PF01323.15	gi|379003173|ref|YP_005258845.1|	-	0.039	13.4	0.0	0.095	12.2	0.0	1.6	2	0	0	2	2	2	0	DSBA-like	thioredoxin	domain
CDK2AP	PF09806.4	gi|379003173|ref|YP_005258845.1|	-	0.098	12.8	0.7	0.17	12.1	0.5	1.3	1	0	0	1	1	1	0	Cyclin-dependent	kinase	2-associated	protein
VWA_2	PF13519.1	gi|379003174|ref|YP_005258846.1|	-	1.6e-19	70.6	0.0	2.5e-19	70.0	0.0	1.2	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|379003174|ref|YP_005258846.1|	-	1.3e-08	34.6	0.0	1.9e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|379003174|ref|YP_005258846.1|	-	1.3e-08	34.2	0.6	6.9e-08	31.9	0.4	2.0	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA	PF00092.23	gi|379003174|ref|YP_005258846.1|	-	2.8e-08	33.6	0.0	4.8e-08	32.9	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
vWA-TerF-like	PF10138.4	gi|379003174|ref|YP_005258846.1|	-	0.0035	17.2	0.0	0.0057	16.4	0.0	1.3	1	0	0	1	1	1	1	vWA	found	in	TerF	C	terminus
DUF58	PF01882.13	gi|379003174|ref|YP_005258846.1|	-	0.0043	17.1	0.1	0.053	13.6	0.0	2.5	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF58
HpaB	PF03241.8	gi|379003174|ref|YP_005258846.1|	-	0.048	12.5	0.1	3.6	6.3	0.0	2.3	2	0	0	2	2	2	0	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
AAA_5	PF07728.9	gi|379003175|ref|YP_005258847.1|	-	5.6e-20	71.4	0.0	1.1e-19	70.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_3	PF07726.6	gi|379003175|ref|YP_005258847.1|	-	5.1e-19	68.1	0.0	1.3e-18	66.9	0.0	1.6	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|379003175|ref|YP_005258847.1|	-	7e-10	38.6	0.0	1.5e-09	37.5	0.0	1.6	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.24	gi|379003175|ref|YP_005258847.1|	-	2.2e-06	27.8	0.0	4.8e-06	26.8	0.0	1.6	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379003175|ref|YP_005258847.1|	-	1.1e-05	25.6	0.0	4.5e-05	23.5	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|379003175|ref|YP_005258847.1|	-	1.3e-05	24.4	0.0	0.0038	16.4	0.0	2.4	1	1	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
MCM	PF00493.18	gi|379003175|ref|YP_005258847.1|	-	6.1e-05	21.9	0.0	0.00011	21.1	0.0	1.3	1	0	0	1	1	1	1	MCM2/3/5	family
RuvB_N	PF05496.7	gi|379003175|ref|YP_005258847.1|	-	6.6e-05	22.0	0.1	0.074	12.0	0.0	2.2	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
Sigma54_activ_2	PF14532.1	gi|379003175|ref|YP_005258847.1|	-	0.00093	19.2	0.0	0.0057	16.7	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|379003175|ref|YP_005258847.1|	-	0.00096	18.8	0.0	0.0018	17.9	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
MobB	PF03205.9	gi|379003175|ref|YP_005258847.1|	-	0.0072	16.0	0.0	0.014	15.1	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|379003175|ref|YP_005258847.1|	-	0.0082	15.7	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003175|ref|YP_005258847.1|	-	0.0083	16.1	0.4	0.15	11.9	0.0	2.6	2	1	1	3	3	3	1	AAA	ATPase	domain
KaiC	PF06745.8	gi|379003175|ref|YP_005258847.1|	-	0.0093	15.1	0.0	0.16	11.0	0.0	2.3	2	0	0	2	2	2	1	KaiC
AAA_19	PF13245.1	gi|379003175|ref|YP_005258847.1|	-	0.0094	15.6	0.2	0.023	14.4	0.1	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|379003175|ref|YP_005258847.1|	-	0.011	15.5	0.0	0.019	14.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
ATP-synt_ab	PF00006.20	gi|379003175|ref|YP_005258847.1|	-	0.013	15.0	0.0	0.15	11.5	0.0	2.0	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF2654	PF10849.3	gi|379003175|ref|YP_005258847.1|	-	0.013	15.1	0.1	0.03	14.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2654)
TIP49	PF06068.8	gi|379003175|ref|YP_005258847.1|	-	0.021	13.5	0.0	0.058	12.1	0.0	1.6	2	0	0	2	2	2	0	TIP49	C-terminus
AAA_28	PF13521.1	gi|379003175|ref|YP_005258847.1|	-	0.029	14.3	0.1	0.21	11.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
CHASE2	PF05226.6	gi|379003175|ref|YP_005258847.1|	-	0.03	13.5	0.0	0.048	12.8	0.0	1.3	1	0	0	1	1	1	0	CHASE2	domain
AAA_18	PF13238.1	gi|379003175|ref|YP_005258847.1|	-	0.041	14.1	0.1	0.11	12.8	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|379003175|ref|YP_005258847.1|	-	0.045	13.4	0.1	0.58	9.8	0.0	2.6	3	0	0	3	3	3	0	NTPase
AAA_17	PF13207.1	gi|379003175|ref|YP_005258847.1|	-	0.073	13.8	0.1	0.37	11.6	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|379003175|ref|YP_005258847.1|	-	0.074	12.6	0.0	0.16	11.5	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
PduV-EutP	PF10662.4	gi|379003175|ref|YP_005258847.1|	-	0.1	12.0	0.0	0.69	9.4	0.0	2.1	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.22	gi|379003175|ref|YP_005258847.1|	-	0.11	12.8	0.1	0.25	11.6	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_PrkA	PF08298.6	gi|379003175|ref|YP_005258847.1|	-	0.14	10.8	0.0	2.6	6.6	0.0	2.0	1	1	1	2	2	2	0	PrkA	AAA	domain
DUF258	PF03193.11	gi|379003175|ref|YP_005258847.1|	-	0.14	11.3	0.0	0.22	10.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|379003176|ref|YP_005258848.1|	-	2.8e-09	36.8	0.1	5.8e-09	35.7	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CbiA	PF01656.18	gi|379003176|ref|YP_005258848.1|	-	5.1e-06	26.0	0.0	8.5e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_10	PF12846.2	gi|379003176|ref|YP_005258848.1|	-	0.00012	21.6	0.1	0.00017	21.1	0.1	1.2	1	0	0	1	1	1	1	AAA-like	domain
SRP54	PF00448.17	gi|379003176|ref|YP_005258848.1|	-	0.01	15.3	1.6	0.071	12.5	0.6	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
ArgK	PF03308.11	gi|379003176|ref|YP_005258848.1|	-	0.011	14.4	0.1	0.018	13.8	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_25	PF13481.1	gi|379003176|ref|YP_005258848.1|	-	0.03	13.7	0.1	0.053	12.9	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
UPF0128	PF03673.8	gi|379003176|ref|YP_005258848.1|	-	0.045	13.0	0.1	0.2	10.9	0.0	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0128)
AAA_17	PF13207.1	gi|379003176|ref|YP_005258848.1|	-	0.097	13.4	0.1	0.25	12.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|379003176|ref|YP_005258848.1|	-	0.14	12.0	0.0	0.36	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
Metallophos	PF00149.23	gi|379003177|ref|YP_005258849.1|	-	1.3e-09	37.7	0.1	2.9e-08	33.3	0.1	2.2	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|379003177|ref|YP_005258849.1|	-	1.8e-07	31.1	0.0	2.8e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
CbiA	PF01656.18	gi|379003178|ref|YP_005258850.1|	-	0.00014	21.3	0.2	0.25	10.7	0.0	2.2	2	0	0	2	2	2	2	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Acetyltransf_1	PF00583.19	gi|379003179|ref|YP_005258851.1|	-	8.2e-16	57.8	0.1	1.5e-15	56.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|379003179|ref|YP_005258851.1|	-	5.2e-09	36.2	0.0	6.9e-09	35.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379003179|ref|YP_005258851.1|	-	5.3e-09	36.1	0.1	7.8e-09	35.5	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|379003179|ref|YP_005258851.1|	-	9.5e-08	31.6	0.0	1.5e-07	31.0	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|379003179|ref|YP_005258851.1|	-	2.1e-07	30.9	0.0	2.6e-07	30.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|379003179|ref|YP_005258851.1|	-	5.3e-07	29.6	0.0	6.7e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|379003179|ref|YP_005258851.1|	-	5.4e-07	29.5	0.0	3.7e-06	26.8	0.0	2.0	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|379003179|ref|YP_005258851.1|	-	6.9e-05	23.0	0.0	0.0001	22.4	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|379003179|ref|YP_005258851.1|	-	0.00028	20.8	0.0	0.00038	20.4	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|379003179|ref|YP_005258851.1|	-	0.016	14.8	0.0	0.02	14.4	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|379003179|ref|YP_005258851.1|	-	0.033	14.0	0.0	0.061	13.2	0.0	1.5	1	0	0	1	1	1	0	GCN5-related	N-acetyl-transferase
GNAT_acetyltr_2	PF13718.1	gi|379003179|ref|YP_005258851.1|	-	0.083	12.2	0.0	0.14	11.4	0.0	1.4	1	1	0	1	1	1	0	GNAT	acetyltransferase	2
Methyltransf_3	PF01596.12	gi|379003179|ref|YP_005258851.1|	-	0.11	11.5	0.0	0.13	11.2	0.0	1.2	1	0	0	1	1	1	0	O-methyltransferase
AAA_16	PF13191.1	gi|379003180|ref|YP_005258852.1|	-	0.0047	16.9	6.2	0.024	14.6	0.0	3.9	3	2	1	4	4	4	1	AAA	ATPase	domain
Rrf2	PF02082.15	gi|379003180|ref|YP_005258852.1|	-	0.025	14.7	0.4	0.13	12.3	0.0	2.5	2	0	0	2	2	2	0	Transcriptional	regulator
TrmB	PF01978.14	gi|379003180|ref|YP_005258852.1|	-	0.12	12.0	0.2	0.12	12.0	0.1	3.3	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
AAA_22	PF13401.1	gi|379003180|ref|YP_005258852.1|	-	0.14	12.2	2.5	2.7	8.1	0.0	3.6	3	1	0	3	3	3	0	AAA	domain
CAP160	PF07918.6	gi|379003180|ref|YP_005258852.1|	-	0.24	11.0	1.2	0.74	9.4	0.8	1.8	1	0	0	1	1	1	0	CAP160	repeat
NurA	PF09376.5	gi|379003182|ref|YP_005258854.1|	-	0.00027	20.5	0.9	0.011	15.1	0.6	2.8	1	1	0	1	1	1	1	NurA	domain
Aminotran_1_2	PF00155.16	gi|379003184|ref|YP_005258856.1|	-	1e-53	182.6	0.0	1.1e-53	182.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|379003184|ref|YP_005258856.1|	-	2.7e-10	39.0	0.0	3.9e-10	38.5	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|379003184|ref|YP_005258856.1|	-	7.6e-05	21.8	0.0	0.00012	21.2	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
RNase_Zc3h12a	PF11977.3	gi|379003184|ref|YP_005258856.1|	-	0.014	15.2	0.0	0.025	14.4	0.0	1.4	1	0	0	1	1	1	0	Zc3h12a-like	Ribonuclease	NYN	domain
Aminotran_MocR	PF12897.2	gi|379003184|ref|YP_005258856.1|	-	0.018	13.6	0.0	0.034	12.7	0.0	1.4	1	0	0	1	1	1	0	Alanine-glyoxylate	amino-transferase
DUF498	PF04430.9	gi|379003184|ref|YP_005258856.1|	-	0.06	12.9	0.1	0.24	10.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF498/DUF598)
Beta_elim_lyase	PF01212.16	gi|379003184|ref|YP_005258856.1|	-	0.088	11.9	0.0	0.16	11.0	0.0	1.4	1	0	0	1	1	1	0	Beta-eliminating	lyase
CAP18_C	PF12153.3	gi|379003184|ref|YP_005258856.1|	-	0.17	11.5	1.0	2.2	7.9	0.1	2.9	3	0	0	3	3	3	0	LPS	binding	domain	of	CAP18	(C	terminal)
NUDIX	PF00293.23	gi|379003185|ref|YP_005258857.1|	-	1.9e-16	59.8	0.3	2.5e-16	59.5	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
HALZ	PF02183.13	gi|379003186|ref|YP_005258858.1|	-	5.9e-05	22.6	3.9	0.00013	21.5	2.7	1.5	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
DUF904	PF06005.7	gi|379003186|ref|YP_005258858.1|	-	0.0016	18.6	2.5	0.0028	17.9	1.7	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
Seryl_tRNA_N	PF02403.17	gi|379003186|ref|YP_005258858.1|	-	0.003	17.5	0.4	0.43	10.6	0.9	2.1	2	0	0	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
Apolipoprotein	PF01442.13	gi|379003186|ref|YP_005258858.1|	-	0.0031	17.0	1.4	2.3	7.6	0.0	2.1	2	0	0	2	2	2	2	Apolipoprotein	A1/A4/E	domain
DUF972	PF06156.8	gi|379003186|ref|YP_005258858.1|	-	0.0066	16.7	0.6	0.015	15.5	0.4	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF972)
bZIP_1	PF00170.16	gi|379003186|ref|YP_005258858.1|	-	0.0078	16.1	2.9	0.013	15.4	2.0	1.3	1	0	0	1	1	1	1	bZIP	transcription	factor
DUF4200	PF13863.1	gi|379003186|ref|YP_005258858.1|	-	0.015	15.2	1.1	0.026	14.4	0.8	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
HAP1_N	PF04849.8	gi|379003186|ref|YP_005258858.1|	-	0.016	14.1	1.0	0.021	13.7	0.7	1.1	1	0	0	1	1	1	0	HAP1	N-terminal	conserved	region
PEP-utilisers_N	PF05524.8	gi|379003186|ref|YP_005258858.1|	-	0.016	14.9	0.3	0.034	13.9	0.2	1.6	2	0	0	2	2	1	0	PEP-utilising	enzyme,	N-terminal
Phlebovirus_NSM	PF07246.6	gi|379003186|ref|YP_005258858.1|	-	0.022	13.9	0.1	0.027	13.6	0.1	1.1	1	0	0	1	1	1	0	Phlebovirus	nonstructural	protein	NS-M
Microtub_assoc	PF07989.6	gi|379003186|ref|YP_005258858.1|	-	0.027	14.2	1.2	0.051	13.4	0.8	1.4	1	0	0	1	1	1	0	Microtubule	associated
bZIP_2	PF07716.10	gi|379003186|ref|YP_005258858.1|	-	0.029	14.1	3.4	0.041	13.7	1.8	1.7	1	1	0	1	1	1	0	Basic	region	leucine	zipper
DivIC	PF04977.10	gi|379003186|ref|YP_005258858.1|	-	0.037	13.5	0.6	0.067	12.6	0.4	1.4	1	0	0	1	1	1	0	Septum	formation	initiator
DUF4140	PF13600.1	gi|379003186|ref|YP_005258858.1|	-	0.045	14.2	0.2	0.071	13.5	0.1	1.4	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
CorA	PF01544.13	gi|379003186|ref|YP_005258858.1|	-	0.047	12.7	0.0	0.084	11.8	0.1	1.4	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Val_tRNA-synt_C	PF10458.4	gi|379003186|ref|YP_005258858.1|	-	0.058	13.4	3.6	0.11	12.6	2.5	1.4	1	0	0	1	1	1	0	Valyl	tRNA	synthetase	tRNA	binding	arm
IFP_35_N	PF07334.8	gi|379003186|ref|YP_005258858.1|	-	0.072	13.0	2.3	0.12	12.3	1.6	1.3	1	0	0	1	1	1	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
DivIVA	PF05103.8	gi|379003186|ref|YP_005258858.1|	-	0.11	12.5	1.1	0.17	11.9	0.7	1.3	1	0	0	1	1	1	0	DivIVA	protein
BEX	PF04538.7	gi|379003186|ref|YP_005258858.1|	-	0.21	11.7	1.2	1.4	9.2	0.2	2.4	2	1	0	2	2	2	0	Brain	expressed	X-linked	like	family
IncA	PF04156.9	gi|379003186|ref|YP_005258858.1|	-	0.54	9.8	3.1	0.27	10.8	0.8	1.4	2	0	0	2	2	2	0	IncA	protein
Radical_SAM	PF04055.16	gi|379003187|ref|YP_005258859.1|	-	7.4e-08	32.7	0.0	1.3e-07	31.9	0.0	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379003187|ref|YP_005258859.1|	-	4.7e-06	26.7	0.0	7e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|379003187|ref|YP_005258859.1|	-	0.00011	22.1	0.0	0.00022	21.2	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TrbC	PF04956.8	gi|379003188|ref|YP_005258860.1|	-	0.0003	20.7	2.5	0.0075	16.2	1.7	2.0	1	1	0	1	1	1	1	TrbC/VIRB2	family
PhaG_MnhG_YufB	PF03334.9	gi|379003188|ref|YP_005258860.1|	-	0.0034	17.4	4.8	0.0046	16.9	0.3	2.1	2	0	0	2	2	2	1	Na+/H+	antiporter	subunit
Orthopox_B11R	PF07033.6	gi|379003188|ref|YP_005258860.1|	-	0.019	14.4	0.2	0.026	13.9	0.1	1.1	1	0	0	1	1	1	0	Orthopoxvirus	B11R	protein
Baculo_PEP_C	PF04513.7	gi|379003188|ref|YP_005258860.1|	-	0.03	14.1	0.4	0.038	13.8	0.3	1.1	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
SEN1_N	PF12726.2	gi|379003188|ref|YP_005258860.1|	-	0.07	11.1	0.0	0.074	11.1	0.0	1.0	1	0	0	1	1	1	0	SEN1	N	terminal
DUF456	PF04306.8	gi|379003188|ref|YP_005258860.1|	-	0.084	12.9	2.7	0.13	12.3	1.9	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF456)
DUF3566	PF12089.3	gi|379003188|ref|YP_005258860.1|	-	0.095	12.7	2.2	0.13	12.2	1.5	1.4	1	1	0	1	1	1	0	Transmembrane	domain	of	unknown	function	(DUF3566)
CD47	PF04549.9	gi|379003188|ref|YP_005258860.1|	-	0.12	12.3	3.2	0.15	12.0	2.2	1.3	1	1	0	1	1	1	0	CD47	transmembrane	region
BT1	PF03092.11	gi|379003188|ref|YP_005258860.1|	-	0.15	10.7	1.7	0.15	10.7	1.2	1.0	1	0	0	1	1	1	0	BT1	family
DUF2892	PF11127.3	gi|379003188|ref|YP_005258860.1|	-	0.66	9.8	5.5	9.4	6.1	0.9	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Phage_holin_1	PF04531.8	gi|379003188|ref|YP_005258860.1|	-	1.3	9.1	3.7	3.7	7.6	0.3	2.3	1	1	1	2	2	2	0	Bacteriophage	holin
DAGK_prokar	PF01219.14	gi|379003188|ref|YP_005258860.1|	-	2.1	8.0	7.3	0.5	9.9	0.1	2.4	2	1	1	3	3	3	0	Prokaryotic	diacylglycerol	kinase
DUF2223	PF09985.4	gi|379003189|ref|YP_005258861.1|	-	3e-37	128.1	0.1	1.8e-17	63.4	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF2223)
SBP_bac_5	PF00496.17	gi|379003190|ref|YP_005258862.1|	-	1.8e-19	69.8	16.2	9.6e-19	67.4	0.1	3.3	3	1	0	3	3	3	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.17	gi|379003191|ref|YP_005258863.1|	-	4.8e-31	107.6	14.3	4.8e-31	107.6	9.9	2.3	2	1	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379003192|ref|YP_005258864.1|	-	5.5e-28	97.7	17.0	5.5e-28	97.7	11.8	2.0	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|379003192|ref|YP_005258864.1|	-	0.011	15.1	0.1	0.011	15.1	0.0	3.0	4	0	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Ribosomal_S13	PF00416.17	gi|379003193|ref|YP_005258865.1|	-	4e-27	94.7	0.0	5.3e-27	94.3	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
FbpA	PF05833.6	gi|379003193|ref|YP_005258865.1|	-	0.083	11.4	0.0	0.098	11.1	0.0	1.1	1	0	0	1	1	1	0	Fibronectin-binding	protein	A	N-terminus	(FbpA)
S4	PF01479.20	gi|379003194|ref|YP_005258866.1|	-	3.7e-16	58.2	0.1	7.4e-16	57.3	0.0	1.6	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.14	gi|379003194|ref|YP_005258866.1|	-	0.0075	16.6	0.6	0.013	15.8	0.2	1.7	1	1	0	1	1	1	1	Ribosomal	protein	S4/S9	N-terminal	domain
Asparaginase_2	PF01112.13	gi|379003195|ref|YP_005258867.1|	-	5.2e-64	215.9	2.7	7.2e-64	215.5	1.9	1.1	1	0	0	1	1	1	1	Asparaginase
B5	PF03484.10	gi|379003196|ref|YP_005258868.1|	-	0.023	14.5	0.0	0.7	9.7	0.0	2.0	1	1	1	2	2	2	0	tRNA	synthetase	B5	domain
DUF72	PF01904.13	gi|379003198|ref|YP_005258870.1|	-	6e-37	127.6	0.0	7e-37	127.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Abi	PF02517.11	gi|379003199|ref|YP_005258871.1|	-	5.4e-09	36.0	5.0	5.4e-09	36.0	3.5	2.5	2	1	0	2	2	2	1	CAAX	protease	self-immunity
HAD_2	PF13419.1	gi|379003201|ref|YP_005258873.1|	-	8.4e-19	68.4	0.0	9.9e-19	68.2	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379003201|ref|YP_005258873.1|	-	4.9e-08	33.6	1.0	2.2e-06	28.2	0.7	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379003201|ref|YP_005258873.1|	-	8.6e-07	29.3	0.0	1.3e-06	28.7	0.0	1.3	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379003201|ref|YP_005258873.1|	-	2.1e-06	27.3	0.1	3.6e-06	26.6	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_3	PF08282.7	gi|379003201|ref|YP_005258873.1|	-	0.00055	19.6	0.1	0.14	11.6	0.0	2.3	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|379003201|ref|YP_005258873.1|	-	0.0073	15.6	0.0	0.063	12.5	0.0	2.0	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
PaRep2b	PF07775.6	gi|379003202|ref|YP_005258874.1|	-	2.7e-128	428.4	19.2	6e-81	272.2	4.9	2.0	1	1	1	2	2	2	2	PaRep2b	protein
SPOR	PF05036.8	gi|379003202|ref|YP_005258874.1|	-	0.031	14.4	0.6	1.2	9.3	0.0	3.1	3	0	0	3	3	3	0	Sporulation	related	domain
DUF1967	PF09269.6	gi|379003202|ref|YP_005258874.1|	-	0.39	10.4	3.9	17	5.1	0.0	3.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1967)
PaRep2b	PF07775.6	gi|379003203|ref|YP_005258875.1|	-	2.1e-05	22.9	0.0	2.3e-05	22.8	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
DUF3670	PF12419.3	gi|379003204|ref|YP_005258876.1|	-	0.13	11.6	0.1	0.17	11.3	0.0	1.1	1	0	0	1	1	1	0	SNF2	Helicase	protein
Toprim_4	PF13662.1	gi|379003205|ref|YP_005258877.1|	-	4.2e-08	33.0	0.6	1.7e-07	31.1	0.4	2.1	1	1	0	1	1	1	1	Toprim	domain
Toprim	PF01751.17	gi|379003205|ref|YP_005258877.1|	-	0.0025	17.7	4.1	0.0025	17.7	0.1	2.6	2	1	0	2	2	2	1	Toprim	domain
DNA_pol_B	PF00136.16	gi|379003208|ref|YP_005258880.1|	-	8.9e-92	308.2	0.0	1.1e-91	307.9	0.0	1.1	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|379003208|ref|YP_005258880.1|	-	1.6e-33	115.9	0.0	1.4e-32	112.8	0.0	2.2	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.1	gi|379003208|ref|YP_005258880.1|	-	6.1e-10	39.1	0.0	1e-09	38.3	0.0	1.4	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.4	gi|379003208|ref|YP_005258880.1|	-	1.6e-06	27.7	0.0	3.1e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
DUF99	PF01949.11	gi|379003208|ref|YP_005258880.1|	-	0.093	11.8	0.0	17	4.4	0.0	3.6	4	0	0	4	4	4	0	Protein	of	unknown	function	DUF99
DNA_pol_B_2	PF03175.8	gi|379003208|ref|YP_005258880.1|	-	0.33	9.5	0.6	0.61	8.6	0.4	1.3	1	0	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
Lactamase_B_2	PF12706.2	gi|379003209|ref|YP_005258881.1|	-	3.3e-13	49.6	0.0	1.3e-12	47.6	0.0	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|379003209|ref|YP_005258881.1|	-	1.3e-08	34.6	0.0	4.1e-08	33.0	0.0	1.7	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379003209|ref|YP_005258881.1|	-	3.9e-08	33.1	4.0	1.2e-07	31.6	2.8	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|379003209|ref|YP_005258881.1|	-	0.015	15.1	0.3	0.073	12.9	0.0	2.2	2	0	0	2	2	2	0	RNA-metabolising	metallo-beta-lactamase
DRMBL	PF07522.9	gi|379003209|ref|YP_005258881.1|	-	0.042	13.8	0.0	0.077	13.0	0.0	1.3	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
ThiI	PF02568.9	gi|379003210|ref|YP_005258882.1|	-	9.5e-55	185.1	0.0	1.4e-54	184.6	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
THUMP	PF02926.12	gi|379003210|ref|YP_005258882.1|	-	3.3e-19	69.2	0.1	9.2e-19	67.7	0.0	1.8	2	0	0	2	2	2	1	THUMP	domain
Rhodanese	PF00581.15	gi|379003210|ref|YP_005258882.1|	-	7.6e-10	39.1	0.0	2.5e-09	37.4	0.0	1.8	1	0	0	1	1	1	1	Rhodanese-like	domain
QueC	PF06508.8	gi|379003210|ref|YP_005258882.1|	-	4.7e-06	26.0	0.0	0.046	13.0	0.0	2.5	2	0	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
ATP_bind_3	PF01171.15	gi|379003210|ref|YP_005258882.1|	-	0.0031	17.0	0.1	0.07	12.6	0.0	2.2	1	1	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|379003210|ref|YP_005258882.1|	-	0.0065	15.0	0.1	0.015	13.8	0.0	1.6	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|379003210|ref|YP_005258882.1|	-	0.088	12.2	0.1	0.16	11.4	0.1	1.6	1	1	0	1	1	1	0	Asparagine	synthase
Glycos_transf_1	PF00534.15	gi|379003211|ref|YP_005258883.1|	-	1.3e-08	34.5	0.0	2.6e-08	33.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Phosphorylase	PF00343.15	gi|379003211|ref|YP_005258883.1|	-	2.4e-07	29.0	0.0	3.4e-07	28.5	0.0	1.2	1	0	0	1	1	1	1	Carbohydrate	phosphorylase
Glyco_trans_1_4	PF13692.1	gi|379003211|ref|YP_005258883.1|	-	0.00046	20.3	0.0	0.0016	18.5	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
CHASE	PF03924.8	gi|379003211|ref|YP_005258883.1|	-	0.064	12.4	0.1	9.8	5.3	0.0	2.4	2	0	0	2	2	2	0	CHASE	domain
AFOR_C	PF01314.13	gi|379003212|ref|YP_005258884.1|	-	4e-126	420.7	0.0	4.9e-126	420.4	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|379003212|ref|YP_005258884.1|	-	3.7e-82	274.5	0.4	7.4e-82	273.5	0.2	1.5	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
Glyco_hydro_57	PF03065.10	gi|379003213|ref|YP_005258885.1|	-	1.2e-71	241.5	0.0	4.1e-71	239.7	0.0	1.8	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	57
Polysacc_deac_1	PF01522.16	gi|379003213|ref|YP_005258885.1|	-	0.00024	20.7	0.0	0.00048	19.7	0.0	1.5	1	0	0	1	1	1	1	Polysaccharide	deacetylase
Glyco_transf_5	PF08323.6	gi|379003214|ref|YP_005258886.1|	-	3.3e-43	147.9	0.0	5.1e-43	147.3	0.0	1.3	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glycos_transf_1	PF00534.15	gi|379003214|ref|YP_005258886.1|	-	1.8e-26	92.5	0.0	3.7e-26	91.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379003214|ref|YP_005258886.1|	-	2.4e-11	43.9	0.1	5.1e-11	42.8	0.1	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|379003214|ref|YP_005258886.1|	-	5.2e-11	42.9	6.4	1.8e-10	41.2	3.1	2.5	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|379003214|ref|YP_005258886.1|	-	0.0086	15.8	0.1	0.42	10.3	0.0	2.4	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.1	gi|379003214|ref|YP_005258886.1|	-	0.035	14.3	0.0	0.095	12.9	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
NTP_transferase	PF00483.18	gi|379003215|ref|YP_005258887.1|	-	4.8e-35	121.0	0.0	6.8e-35	120.5	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|379003215|ref|YP_005258887.1|	-	7.7e-10	37.8	8.7	0.00046	19.5	0.4	3.9	1	1	3	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|379003215|ref|YP_005258887.1|	-	0.00012	22.2	0.0	0.00046	20.2	0.0	1.8	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Fucokinase	PF07959.7	gi|379003215|ref|YP_005258887.1|	-	0.021	13.3	1.4	0.12	10.9	0.4	2.0	1	1	1	2	2	2	0	L-fucokinase
Hexapep_2	PF14602.1	gi|379003215|ref|YP_005258887.1|	-	0.051	13.1	8.7	1.8	8.2	0.3	4.3	2	1	2	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
Methyltrn_RNA_3	PF02598.12	gi|379003216|ref|YP_005258888.1|	-	9.6e-58	195.8	0.0	1.1e-57	195.5	0.0	1.0	1	0	0	1	1	1	1	Putative	RNA	methyltransferase
U1snRNP70_N	PF12220.3	gi|379003217|ref|YP_005258889.1|	-	0.4	11.0	10.6	0.41	10.9	7.3	1.0	1	0	0	1	1	1	0	U1	small	nuclear	ribonucleoprotein	of	70kDa	MW	N	terminal
UPF0542	PF15086.1	gi|379003217|ref|YP_005258889.1|	-	2.6	7.8	5.6	2.8	7.7	3.9	1.2	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0542
BLVR	PF06375.6	gi|379003217|ref|YP_005258889.1|	-	2.7	7.7	11.1	2.6	7.8	7.7	1.0	1	0	0	1	1	1	0	Bovine	leukaemia	virus	receptor	(BLVR)
Casc1	PF12366.3	gi|379003217|ref|YP_005258889.1|	-	4.1	6.8	7.8	4.2	6.8	5.4	1.0	1	0	0	1	1	1	0	Cancer	susceptibility	candidate	1
SecY	PF00344.15	gi|379003218|ref|YP_005258890.1|	-	6.4e-66	222.6	20.8	9.1e-66	222.1	14.4	1.2	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|379003218|ref|YP_005258890.1|	-	0.015	14.8	0.4	0.039	13.4	0.3	1.8	1	0	0	1	1	1	0	Plug	domain	of	Sec61p
Ribosomal_L18e	PF00828.14	gi|379003219|ref|YP_005258891.1|	-	1.2e-32	112.9	0.4	1.5e-32	112.6	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
WHEP-TRS	PF00458.15	gi|379003219|ref|YP_005258891.1|	-	0.084	12.5	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	WHEP-TRS	domain
ROK	PF00480.15	gi|379003220|ref|YP_005258892.1|	-	1.7e-28	99.6	0.1	2.3e-28	99.2	0.0	1.2	1	0	0	1	1	1	1	ROK	family
BcrAD_BadFG	PF01869.15	gi|379003220|ref|YP_005258892.1|	-	0.002	17.4	0.4	0.0069	15.7	0.0	1.9	2	0	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
MutL	PF13941.1	gi|379003220|ref|YP_005258892.1|	-	0.0031	15.8	0.0	0.0042	15.4	0.0	1.1	1	0	0	1	1	1	1	MutL	protein
FGGY_N	PF00370.16	gi|379003220|ref|YP_005258892.1|	-	0.0038	16.5	0.0	0.0065	15.8	0.0	1.3	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
Hydant_A_N	PF05378.8	gi|379003220|ref|YP_005258892.1|	-	0.0059	16.1	0.0	0.0091	15.5	0.0	1.2	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
DEDD_Tnp_IS110	PF01548.12	gi|379003220|ref|YP_005258892.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.6	1	1	0	1	1	1	0	Transposase
ELFV_dehydrog	PF00208.16	gi|379003221|ref|YP_005258893.1|	-	5.6e-68	229.1	0.3	7.3e-68	228.7	0.2	1.1	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|379003221|ref|YP_005258893.1|	-	1.2e-47	160.7	0.0	2e-47	160.0	0.0	1.4	1	0	0	1	1	1	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
AdoHcyase_NAD	PF00670.16	gi|379003221|ref|YP_005258893.1|	-	0.058	13.2	0.1	0.11	12.3	0.1	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|379003221|ref|YP_005258893.1|	-	0.11	11.6	2.2	0.08	12.0	0.3	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Aminotran_5	PF00266.14	gi|379003222|ref|YP_005258894.1|	-	9.9e-25	87.0	0.0	1.3e-24	86.6	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|379003222|ref|YP_005258894.1|	-	0.0077	15.3	0.8	0.012	14.6	0.6	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|379003222|ref|YP_005258894.1|	-	0.17	10.7	0.0	0.26	10.2	0.0	1.3	1	1	0	1	1	1	0	Aminotransferase	class	I	and	II
Orbi_VP3	PF01700.11	gi|379003222|ref|YP_005258894.1|	-	0.25	8.7	0.0	0.39	8.0	0.0	1.2	1	0	0	1	1	1	0	Orbivirus	VP3	(T2)	protein
HEPN	PF05168.9	gi|379003223|ref|YP_005258895.1|	-	2.2e-08	34.0	0.0	3.9e-08	33.1	0.0	1.4	2	0	0	2	2	2	1	HEPN	domain
PaREP1	PF05942.6	gi|379003223|ref|YP_005258895.1|	-	0.0018	18.0	0.0	0.0027	17.5	0.0	1.4	1	1	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
NTP_transf_3	PF12804.2	gi|379003225|ref|YP_005258897.1|	-	7.2e-26	91.1	0.0	1.1e-25	90.5	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_hydro_57	PF03065.10	gi|379003226|ref|YP_005258898.1|	-	2e-110	369.1	0.0	2.5e-110	368.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
DUF2223	PF09985.4	gi|379003226|ref|YP_005258898.1|	-	5.8e-72	241.7	0.1	1.1e-71	240.8	0.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2223)
SBP_bac_8	PF13416.1	gi|379003227|ref|YP_005258899.1|	-	5.3e-39	134.6	1.8	7e-39	134.2	1.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|379003227|ref|YP_005258899.1|	-	7.2e-27	94.9	7.5	1.1e-26	94.3	5.2	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|379003227|ref|YP_005258899.1|	-	4e-06	26.3	0.0	9.3e-05	21.8	0.0	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.17	gi|379003228|ref|YP_005258900.1|	-	2e-12	47.0	21.2	2e-12	47.0	14.7	2.7	2	1	1	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379003229|ref|YP_005258901.1|	-	9.3e-14	51.3	22.7	2e-13	50.2	15.7	1.7	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
Peptidase_M48	PF01435.13	gi|379003231|ref|YP_005258903.1|	-	6.9e-47	159.8	0.1	1.1e-46	159.2	0.1	1.3	1	0	0	1	1	1	1	Peptidase	family	M48
Peptidase_MA_2	PF13485.1	gi|379003231|ref|YP_005258903.1|	-	0.12	12.4	0.1	0.25	11.3	0.1	1.5	1	0	0	1	1	1	0	Peptidase	MA	superfamily
Virul_fac_BrkB	PF03631.10	gi|379003231|ref|YP_005258903.1|	-	7.3	5.8	24.6	11	5.2	0.4	2.3	2	0	0	2	2	2	0	Virulence	factor	BrkB
PBP_like	PF12727.2	gi|379003233|ref|YP_005258905.1|	-	2.2e-58	196.4	0.3	7.7e-58	194.6	0.1	2.0	2	0	0	2	2	2	1	PBP	superfamily	domain
MoeA_N	PF03453.12	gi|379003233|ref|YP_005258905.1|	-	1.7e-52	177.0	0.3	2.9e-52	176.3	0.2	1.4	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|379003233|ref|YP_005258905.1|	-	8.1e-31	106.3	0.1	1.8e-30	105.2	0.1	1.6	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|379003233|ref|YP_005258905.1|	-	6e-16	58.1	0.1	1.6e-15	56.7	0.1	1.8	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
SBP_bac_11	PF13531.1	gi|379003233|ref|YP_005258905.1|	-	1.9e-06	27.6	0.0	3.7e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Phosphonate-bd	PF12974.2	gi|379003233|ref|YP_005258905.1|	-	0.0056	16.0	0.4	0.016	14.6	0.0	2.0	2	1	0	2	2	2	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
T2SE	PF00437.15	gi|379003233|ref|YP_005258905.1|	-	0.048	12.5	0.0	0.085	11.7	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
MoeA_N	PF03453.12	gi|379003234|ref|YP_005258906.1|	-	1.3e-49	167.6	0.1	2e-49	167.0	0.1	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|379003234|ref|YP_005258906.1|	-	2.3e-30	104.8	0.3	4.5e-30	103.9	0.2	1.5	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|379003234|ref|YP_005258906.1|	-	3.4e-17	62.1	1.7	7e-17	61.1	0.0	2.4	3	0	0	3	3	3	1	MoeA	C-terminal	region	(domain	IV)
GATase_6	PF13522.1	gi|379003236|ref|YP_005258908.1|	-	3.8e-14	52.7	0.1	5e-14	52.3	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|379003236|ref|YP_005258908.1|	-	3.5e-05	22.6	0.0	5.1e-05	22.0	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_2	PF00310.16	gi|379003236|ref|YP_005258908.1|	-	0.033	12.9	0.0	0.068	11.8	0.0	1.5	2	0	0	2	2	2	0	Glutamine	amidotransferases	class-II
AsnC_trans_reg	PF01037.16	gi|379003237|ref|YP_005258909.1|	-	1.2e-17	63.3	0.2	1.4e-17	63.1	0.2	1.1	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|379003237|ref|YP_005258909.1|	-	0.00026	20.6	0.0	0.00028	20.5	0.0	1.2	1	0	0	1	1	1	1	GYD	domain
HMA	PF00403.21	gi|379003237|ref|YP_005258909.1|	-	0.0069	16.4	0.0	0.012	15.6	0.0	1.4	1	1	0	1	1	1	1	Heavy-metal-associated	domain
AsnC_trans_reg	PF01037.16	gi|379003239|ref|YP_005258911.1|	-	3.7e-23	81.0	0.0	5.8e-23	80.3	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|379003239|ref|YP_005258911.1|	-	6.4e-14	51.0	0.6	1.3e-13	50.1	0.3	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|379003239|ref|YP_005258911.1|	-	3.1e-13	48.9	0.2	5.5e-13	48.2	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_11	PF08279.7	gi|379003239|ref|YP_005258911.1|	-	0.00037	20.0	0.0	0.0014	18.2	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|379003239|ref|YP_005258911.1|	-	0.0017	18.0	0.1	0.0031	17.1	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|379003239|ref|YP_005258911.1|	-	0.0039	17.4	0.1	0.0088	16.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|379003239|ref|YP_005258911.1|	-	0.0079	15.8	0.1	0.015	14.9	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|379003239|ref|YP_005258911.1|	-	0.0089	15.8	0.0	0.017	14.9	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|379003239|ref|YP_005258911.1|	-	0.013	15.0	0.2	0.023	14.2	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|379003239|ref|YP_005258911.1|	-	0.013	15.1	0.0	0.019	14.6	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_DeoR	PF08220.7	gi|379003239|ref|YP_005258911.1|	-	0.033	13.7	0.1	0.064	12.7	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
HTH_28	PF13518.1	gi|379003239|ref|YP_005258911.1|	-	0.035	14.1	0.0	0.065	13.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|379003239|ref|YP_005258911.1|	-	0.049	13.2	0.7	0.077	12.6	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_5	PF01022.15	gi|379003239|ref|YP_005258911.1|	-	0.082	12.5	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Ribosomal_S3Ae	PF01015.13	gi|379003240|ref|YP_005258912.1|	-	9e-67	224.1	1.7	1.1e-66	223.9	1.2	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
DUF3656	PF12392.3	gi|379003240|ref|YP_005258912.1|	-	0.086	12.9	0.4	0.2	11.7	0.3	1.7	1	1	0	1	1	1	0	Collagenase
KH_1	PF00013.24	gi|379003241|ref|YP_005258913.1|	-	0.0019	17.7	1.3	0.0055	16.3	0.7	1.9	1	1	1	2	2	2	1	KH	domain
KH_2	PF07650.12	gi|379003241|ref|YP_005258913.1|	-	0.43	10.1	3.5	2.4	7.7	1.7	2.6	2	1	0	2	2	2	0	KH	domain
RIO1	PF01163.17	gi|379003242|ref|YP_005258914.1|	-	3.6e-47	160.1	0.0	4.9e-47	159.7	0.0	1.1	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|379003242|ref|YP_005258914.1|	-	4e-07	30.0	0.0	2.5e-06	27.3	0.0	2.0	1	1	0	2	2	2	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|379003242|ref|YP_005258914.1|	-	1.7e-05	24.1	0.0	4.6e-05	22.6	0.0	1.6	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|379003242|ref|YP_005258914.1|	-	0.0046	16.0	0.0	0.62	9.0	0.0	2.3	2	0	0	2	2	2	2	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH_6_hur	PF04655.9	gi|379003242|ref|YP_005258914.1|	-	0.0049	16.0	0.2	3.5	6.7	0.0	2.9	3	0	0	3	3	3	2	Aminoglycoside/hydroxyurea	antibiotic	resistance	kinase
POR	PF01558.13	gi|379003243|ref|YP_005258915.1|	-	1.4e-36	125.9	0.0	1.8e-36	125.6	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.16	gi|379003244|ref|YP_005258916.1|	-	3.1e-22	78.8	0.3	8.1e-22	77.4	0.2	1.7	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|379003244|ref|YP_005258916.1|	-	3.8e-14	52.7	0.0	6.9e-14	51.9	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.22	gi|379003244|ref|YP_005258916.1|	-	1.5e-12	46.5	16.5	2.3e-08	33.3	5.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003244|ref|YP_005258916.1|	-	5.9e-08	32.4	9.8	1.2e-07	31.4	6.8	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003244|ref|YP_005258916.1|	-	1.6e-07	31.5	10.2	8.2e-07	29.3	7.1	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379003244|ref|YP_005258916.1|	-	2.1e-06	27.2	13.2	0.0022	17.8	2.9	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379003244|ref|YP_005258916.1|	-	2.2e-06	27.2	21.0	1.4e-05	24.7	3.8	2.8	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379003244|ref|YP_005258916.1|	-	5.7e-06	26.0	8.6	1.2e-05	24.9	6.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
TPP_enzyme_N	PF02776.13	gi|379003244|ref|YP_005258916.1|	-	1.1e-05	25.0	1.8	0.021	14.3	0.2	2.2	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_16	PF13484.1	gi|379003244|ref|YP_005258916.1|	-	5.8e-05	23.7	4.6	0.00035	21.2	0.3	2.4	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|379003244|ref|YP_005258916.1|	-	7.2e-05	22.9	11.1	0.00021	21.4	7.8	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003244|ref|YP_005258916.1|	-	0.00013	22.4	5.5	0.029	14.9	0.4	2.8	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.1	gi|379003244|ref|YP_005258916.1|	-	0.00032	20.6	8.9	0.00086	19.2	6.1	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
E1_dh	PF00676.15	gi|379003244|ref|YP_005258916.1|	-	0.00045	19.0	0.0	0.00092	18.0	0.0	1.4	1	0	0	1	1	1	1	Dehydrogenase	E1	component
Transket_pyr	PF02779.19	gi|379003244|ref|YP_005258916.1|	-	0.00055	19.4	0.4	0.064	12.7	0.1	3.0	2	1	0	2	2	2	1	Transketolase,	pyrimidine	binding	domain
Fer4_17	PF13534.1	gi|379003244|ref|YP_005258916.1|	-	0.0013	19.0	3.6	0.094	13.0	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003244|ref|YP_005258916.1|	-	0.0014	18.8	9.3	0.12	12.7	1.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Transketolase_C	PF02780.15	gi|379003244|ref|YP_005258916.1|	-	0.0037	17.1	0.3	0.0037	17.1	0.2	2.4	3	0	0	3	3	3	1	Transketolase,	C-terminal	domain
Fer4_18	PF13746.1	gi|379003244|ref|YP_005258916.1|	-	0.099	13.0	13.7	0.12	12.8	3.8	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379003244|ref|YP_005258916.1|	-	0.3	11.4	11.7	1.2	9.5	0.8	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
RNA_POL_M_15KD	PF02150.11	gi|379003245|ref|YP_005258917.1|	-	3e-06	26.8	0.1	5.4e-06	25.9	0.1	1.5	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
zf-TFIIB	PF13453.1	gi|379003245|ref|YP_005258917.1|	-	0.00039	19.5	1.1	0.00081	18.5	0.1	2.0	2	0	0	2	2	2	1	Transcription	factor	zinc-finger
zf-NADH-PPase	PF09297.6	gi|379003245|ref|YP_005258917.1|	-	0.0026	17.2	0.0	1.8	8.1	0.0	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.2	gi|379003245|ref|YP_005258917.1|	-	0.0028	17.4	0.1	0.0045	16.7	0.0	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
FYDLN_acid	PF09538.5	gi|379003245|ref|YP_005258917.1|	-	0.0029	18.1	1.3	0.0032	18.0	0.9	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(FYDLN_acid)
DUF2387	PF09526.5	gi|379003245|ref|YP_005258917.1|	-	0.0056	16.5	0.9	0.0089	15.9	0.6	1.6	1	1	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_2	PF13240.1	gi|379003245|ref|YP_005258917.1|	-	0.017	14.5	2.3	0.038	13.4	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003245|ref|YP_005258917.1|	-	0.018	14.2	1.0	0.16	11.2	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379003245|ref|YP_005258917.1|	-	0.11	12.2	0.1	0.26	10.9	0.0	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
NAM-associated	PF14303.1	gi|379003245|ref|YP_005258917.1|	-	0.13	12.5	4.6	0.15	12.4	3.2	1.1	1	0	0	1	1	1	0	No	apical	meristem-associated	C-terminal	domain
zf-ISL3	PF14690.1	gi|379003245|ref|YP_005258917.1|	-	0.14	12.2	0.8	3.3	7.8	0.2	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CCDC-167	PF15188.1	gi|379003245|ref|YP_005258917.1|	-	1.9	8.4	8.0	2.5	8.1	5.6	1.1	1	0	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
AAA	PF00004.24	gi|379003246|ref|YP_005258918.1|	-	3.4e-15	56.3	0.0	8.5e-15	55.1	0.0	1.7	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|379003246|ref|YP_005258918.1|	-	5.6e-15	55.3	0.0	1.2e-12	47.8	0.0	2.3	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rep_fac_C	PF08542.6	gi|379003246|ref|YP_005258918.1|	-	6.3e-14	51.7	0.0	1.5e-13	50.5	0.0	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
Rad17	PF03215.10	gi|379003246|ref|YP_005258918.1|	-	4.4e-10	38.8	0.0	0.0002	20.1	0.0	2.1	1	1	1	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|379003246|ref|YP_005258918.1|	-	3.7e-09	35.9	0.0	7.4e-09	34.9	0.0	1.4	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|379003246|ref|YP_005258918.1|	-	4.5e-09	36.5	0.3	0.0023	18.0	0.0	2.8	2	2	1	3	3	3	2	AAA	domain
AAA_14	PF13173.1	gi|379003246|ref|YP_005258918.1|	-	3.7e-08	33.3	0.0	1.7e-07	31.2	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379003246|ref|YP_005258918.1|	-	1.1e-07	32.0	0.1	0.00023	21.1	0.0	2.7	2	1	1	3	3	3	2	AAA	ATPase	domain
TIP49	PF06068.8	gi|379003246|ref|YP_005258918.1|	-	4.6e-06	25.6	0.0	0.014	14.0	0.0	2.2	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_3	PF07726.6	gi|379003246|ref|YP_005258918.1|	-	6.5e-06	25.7	0.0	1.2e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|379003246|ref|YP_005258918.1|	-	1.5e-05	25.7	0.0	0.00021	22.1	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
DNA_pol3_delta	PF06144.8	gi|379003246|ref|YP_005258918.1|	-	5.2e-05	22.8	0.0	8.9e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
AAA_19	PF13245.1	gi|379003246|ref|YP_005258918.1|	-	8.4e-05	22.2	0.1	0.00037	20.1	0.0	2.1	2	0	0	2	2	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|379003246|ref|YP_005258918.1|	-	9.3e-05	21.9	0.1	0.00033	20.1	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|379003246|ref|YP_005258918.1|	-	9.9e-05	22.6	0.0	0.00049	20.4	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|379003246|ref|YP_005258918.1|	-	0.00011	21.9	0.2	0.00053	19.7	0.0	2.2	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.11	gi|379003246|ref|YP_005258918.1|	-	0.00025	20.3	0.0	0.23	10.6	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
Mg_chelatase	PF01078.16	gi|379003246|ref|YP_005258918.1|	-	0.00031	19.9	0.0	0.0051	16.0	0.0	2.3	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_10	PF12846.2	gi|379003246|ref|YP_005258918.1|	-	0.00071	19.1	0.2	1.3	8.3	0.0	2.7	2	1	1	3	3	3	2	AAA-like	domain
DEAD	PF00270.24	gi|379003246|ref|YP_005258918.1|	-	0.00071	19.1	0.1	0.03	13.8	0.0	2.3	1	1	0	2	2	2	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.12	gi|379003246|ref|YP_005258918.1|	-	0.00072	19.0	0.0	0.0024	17.2	0.0	1.8	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_24	PF13479.1	gi|379003246|ref|YP_005258918.1|	-	0.00082	19.0	0.0	0.0021	17.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379003246|ref|YP_005258918.1|	-	0.00089	19.1	0.0	0.0019	18.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|379003246|ref|YP_005258918.1|	-	0.0028	17.8	0.0	0.0075	16.4	0.0	1.7	2	0	0	2	2	1	1	RNA	helicase
Sigma54_activ_2	PF14532.1	gi|379003246|ref|YP_005258918.1|	-	0.0033	17.4	0.0	0.012	15.6	0.0	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
Arch_ATPase	PF01637.13	gi|379003246|ref|YP_005258918.1|	-	0.0059	16.3	0.0	0.068	12.8	0.0	2.1	1	1	1	2	2	2	1	Archaeal	ATPase
AAA_11	PF13086.1	gi|379003246|ref|YP_005258918.1|	-	0.0062	16.1	0.0	0.026	14.0	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|379003246|ref|YP_005258918.1|	-	0.0085	15.6	0.7	0.1	12.1	0.1	2.5	2	1	0	2	2	1	1	AAA	domain
DUF2075	PF09848.4	gi|379003246|ref|YP_005258918.1|	-	0.013	14.4	0.0	0.088	11.7	0.0	2.0	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_28	PF13521.1	gi|379003246|ref|YP_005258918.1|	-	0.016	15.2	0.0	0.035	14.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|379003246|ref|YP_005258918.1|	-	0.019	13.8	0.0	0.24	10.2	0.0	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ResIII	PF04851.10	gi|379003246|ref|YP_005258918.1|	-	0.028	14.2	0.0	0.34	10.7	0.0	2.3	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|379003246|ref|YP_005258918.1|	-	0.034	12.9	0.0	0.14	10.9	0.0	1.8	1	1	1	2	2	2	0	SNF2	family	N-terminal	domain
Viral_helicase1	PF01443.13	gi|379003246|ref|YP_005258918.1|	-	0.047	13.2	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
KTI12	PF08433.5	gi|379003246|ref|YP_005258918.1|	-	0.047	12.8	0.0	0.076	12.2	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_2	PF07724.9	gi|379003246|ref|YP_005258918.1|	-	0.052	13.4	0.0	0.23	11.3	0.0	1.9	2	0	0	2	2	2	0	AAA	domain	(Cdc48	subfamily)
ArgK	PF03308.11	gi|379003246|ref|YP_005258918.1|	-	0.081	11.6	0.1	3	6.5	0.0	2.4	1	1	1	2	2	2	0	ArgK	protein
NACHT	PF05729.7	gi|379003246|ref|YP_005258918.1|	-	0.084	12.5	0.0	3.9	7.1	0.0	2.3	1	1	1	2	2	2	0	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|379003246|ref|YP_005258918.1|	-	0.12	11.8	0.0	0.51	9.7	0.0	2.0	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|379003246|ref|YP_005258918.1|	-	0.15	12.3	0.0	0.49	10.6	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
Methyltransf_31	PF13847.1	gi|379003246|ref|YP_005258918.1|	-	0.15	11.6	0.0	0.72	9.4	0.0	2.1	2	1	0	2	2	2	0	Methyltransferase	domain
Parvo_NS1	PF01057.12	gi|379003246|ref|YP_005258918.1|	-	0.16	10.8	0.0	0.4	9.5	0.0	1.6	2	0	0	2	2	1	0	Parvovirus	non-structural	protein	NS1
TPR_12	PF13424.1	gi|379003247|ref|YP_005258919.1|	-	0.014	15.3	1.0	0.06	13.2	0.1	2.5	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TGS	PF02824.16	gi|379003248|ref|YP_005258920.1|	-	1.9e-16	59.6	0.0	4.3e-16	58.4	0.0	1.7	1	0	0	1	1	1	1	TGS	domain
MMR_HSR1	PF01926.18	gi|379003248|ref|YP_005258920.1|	-	2.5e-10	40.3	0.0	5.6e-10	39.1	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|379003248|ref|YP_005258920.1|	-	3.6e-06	26.3	0.0	7.3e-06	25.3	0.0	1.5	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|379003248|ref|YP_005258920.1|	-	5.4e-06	26.8	0.0	8.6e-05	23.0	0.0	2.3	2	0	0	2	2	2	1	Miro-like	protein
PduV-EutP	PF10662.4	gi|379003248|ref|YP_005258920.1|	-	0.0074	15.7	0.1	3.4	7.1	0.0	3.0	2	1	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_22	PF13401.1	gi|379003248|ref|YP_005258920.1|	-	0.049	13.7	0.0	0.43	10.7	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|379003248|ref|YP_005258920.1|	-	0.049	13.0	0.1	11	5.4	0.0	2.6	2	1	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
YchF-GTPase_C	PF06071.8	gi|379003248|ref|YP_005258920.1|	-	0.052	13.3	0.8	3.4	7.5	0.1	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF933)
SRPRB	PF09439.5	gi|379003248|ref|YP_005258920.1|	-	0.13	11.4	0.0	0.26	10.4	0.0	1.4	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
ECH	PF00378.15	gi|379003249|ref|YP_005258921.1|	-	5.6e-13	48.5	0.0	6.4e-13	48.3	0.0	1.2	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Iso_dh	PF00180.15	gi|379003250|ref|YP_005258922.1|	-	9.8e-97	324.0	0.0	1.2e-96	323.7	0.0	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Acetyltransf_1	PF00583.19	gi|379003251|ref|YP_005258923.1|	-	1.9e-16	59.8	0.1	2.5e-16	59.4	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|379003251|ref|YP_005258923.1|	-	2.7e-13	50.0	0.0	3.2e-13	49.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|379003251|ref|YP_005258923.1|	-	3.1e-13	49.9	0.0	3.8e-13	49.6	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379003251|ref|YP_005258923.1|	-	2.7e-11	43.4	0.0	3.6e-11	43.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|379003251|ref|YP_005258923.1|	-	9.5e-10	38.0	0.0	2.1e-09	37.0	0.0	1.5	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|379003251|ref|YP_005258923.1|	-	3.2e-08	33.4	0.1	2e-07	30.9	0.0	2.1	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|379003251|ref|YP_005258923.1|	-	2.8e-06	27.5	0.0	3.3e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|379003251|ref|YP_005258923.1|	-	3.9e-06	26.8	0.0	5.1e-06	26.4	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|379003251|ref|YP_005258923.1|	-	0.00025	20.8	0.0	0.00038	20.2	0.0	1.3	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
FadA	PF09403.5	gi|379003251|ref|YP_005258923.1|	-	0.059	13.3	0.0	0.083	12.9	0.0	1.2	1	0	0	1	1	1	0	Adhesion	protein	FadA
Gly_acyl_tr_C	PF08444.5	gi|379003251|ref|YP_005258923.1|	-	0.15	12.1	0.0	0.25	11.3	0.0	1.3	1	0	0	1	1	1	0	Aralkyl	acyl-CoA:amino	acid	N-acyltransferase,	C-terminal	region
NMD3	PF04981.8	gi|379003252|ref|YP_005258924.1|	-	6.6e-54	182.5	0.2	8e-54	182.2	0.1	1.1	1	0	0	1	1	1	1	NMD3	family
zf-ribbon_3	PF13248.1	gi|379003252|ref|YP_005258924.1|	-	0.0013	17.8	0.1	0.25	10.5	0.0	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003252|ref|YP_005258924.1|	-	0.0044	16.4	1.0	0.46	10.0	0.1	2.5	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|379003252|ref|YP_005258924.1|	-	0.036	13.8	2.7	0.31	10.8	1.1	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-BED	PF02892.10	gi|379003252|ref|YP_005258924.1|	-	0.067	12.9	0.1	0.067	12.9	0.1	3.0	4	0	0	4	4	4	0	BED	zinc	finger
zf-C2H2_4	PF13894.1	gi|379003252|ref|YP_005258924.1|	-	0.075	13.3	4.3	30	5.2	0.1	3.5	3	0	0	3	3	3	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|379003252|ref|YP_005258924.1|	-	0.076	12.9	5.4	3.8	7.5	0.1	2.9	3	0	0	3	3	3	0	Zinc	ribbon	domain
DUF164	PF02591.10	gi|379003252|ref|YP_005258924.1|	-	0.23	11.3	4.7	1.3	8.9	0.2	3.1	2	1	0	2	2	2	0	Putative	zinc	ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|379003252|ref|YP_005258924.1|	-	0.28	11.4	3.3	4	7.7	0.2	2.6	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-H2C2_2	PF13465.1	gi|379003252|ref|YP_005258924.1|	-	1.7	9.0	5.1	8.3	6.9	0.0	3.1	3	0	0	3	3	3	0	Zinc-finger	double	domain
zf-C2HC_2	PF13913.1	gi|379003252|ref|YP_005258924.1|	-	4.3	7.1	5.8	6.7	6.5	0.4	2.7	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DNA_methylase	PF00145.12	gi|379003253|ref|YP_005258925.1|	-	2.4e-59	201.1	0.0	3e-41	141.6	0.0	2.2	1	1	1	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_26	PF13659.1	gi|379003253|ref|YP_005258925.1|	-	7e-05	22.8	0.0	0.0001	22.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|379003253|ref|YP_005258925.1|	-	0.085	12.3	0.0	0.13	11.7	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
DUF1064	PF06356.6	gi|379003254|ref|YP_005258926.1|	-	0.049	13.6	0.1	0.088	12.8	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1064)
DUF3196	PF11428.3	gi|379003255|ref|YP_005258927.1|	-	0.076	12.3	1.0	0.079	12.2	0.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3196)
B5	PF03484.10	gi|379003256|ref|YP_005258928.1|	-	5.7e-13	48.4	0.7	1.5e-10	40.7	0.0	3.3	3	0	0	3	3	3	1	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|379003256|ref|YP_005258928.1|	-	3.1e-09	36.5	0.0	5.2e-09	35.7	0.0	1.3	1	0	0	1	1	1	1	B3/4	domain
PRA-PH	PF01503.12	gi|379003257|ref|YP_005258929.1|	-	0.079	13.2	0.7	0.15	12.3	0.5	1.5	1	1	0	1	1	1	0	Phosphoribosyl-ATP	pyrophosphohydrolase
RNA_POL_M_15KD	PF02150.11	gi|379003258|ref|YP_005258930.1|	-	0.017	14.8	0.2	0.026	14.2	0.2	1.3	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
Lar_restr_allev	PF14354.1	gi|379003258|ref|YP_005258930.1|	-	0.027	14.7	0.1	0.032	14.5	0.1	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|379003258|ref|YP_005258930.1|	-	0.052	12.8	0.9	0.083	12.2	0.7	1.3	1	0	0	1	1	1	0	TFIIB	zinc-binding
tRNA_edit	PF04073.10	gi|379003260|ref|YP_005258932.1|	-	2.9e-24	85.2	0.0	4.3e-24	84.7	0.0	1.2	1	0	0	1	1	1	1	Aminoacyl-tRNA	editing	domain
DUF746	PF05344.6	gi|379003260|ref|YP_005258932.1|	-	0.052	13.0	0.0	0.074	12.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF746)
Archease	PF01951.11	gi|379003261|ref|YP_005258933.1|	-	1.6e-42	144.7	0.8	1.8e-42	144.5	0.5	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
OMPdecase	PF00215.19	gi|379003262|ref|YP_005258934.1|	-	5.8e-21	74.9	0.7	7.3e-21	74.6	0.5	1.1	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
HMGL-like	PF00682.14	gi|379003262|ref|YP_005258934.1|	-	0.0029	17.2	0.1	0.008	15.8	0.0	1.8	1	1	0	1	1	1	1	HMGL-like
Ribul_P_3_epim	PF00834.14	gi|379003262|ref|YP_005258934.1|	-	0.015	14.3	0.3	0.02	13.9	0.2	1.3	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
AAA_18	PF13238.1	gi|379003263|ref|YP_005258935.1|	-	1.6e-09	38.1	0.1	2.2e-09	37.6	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003263|ref|YP_005258935.1|	-	6e-08	33.5	0.0	7.2e-08	33.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|379003263|ref|YP_005258935.1|	-	1e-05	24.9	0.7	0.0088	15.4	0.5	2.5	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_33	PF13671.1	gi|379003263|ref|YP_005258935.1|	-	0.0034	17.2	0.0	0.0093	15.8	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379003263|ref|YP_005258935.1|	-	0.019	15.0	0.0	0.029	14.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379003263|ref|YP_005258935.1|	-	0.021	14.7	0.0	0.044	13.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|379003263|ref|YP_005258935.1|	-	0.023	14.4	0.2	0.072	12.8	0.0	1.8	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|379003263|ref|YP_005258935.1|	-	0.025	14.1	0.1	0.4	10.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|379003263|ref|YP_005258935.1|	-	0.031	13.3	0.0	0.077	12.0	0.0	1.7	1	1	0	1	1	1	0	Zeta	toxin
AAA	PF00004.24	gi|379003263|ref|YP_005258935.1|	-	0.055	13.6	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
FeoB_N	PF02421.13	gi|379003263|ref|YP_005258935.1|	-	0.073	12.3	0.0	0.11	11.7	0.0	1.3	1	0	0	1	1	1	0	Ferrous	iron	transport	protein	B
cobW	PF02492.14	gi|379003263|ref|YP_005258935.1|	-	0.086	12.2	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Peripla_BP_2	PF01497.13	gi|379003263|ref|YP_005258935.1|	-	0.12	11.4	0.1	0.39	9.8	0.0	1.7	1	1	1	2	2	2	0	Periplasmic	binding	protein
DJ-1_PfpI	PF01965.19	gi|379003264|ref|YP_005258936.1|	-	6.3e-08	32.2	0.0	1.4e-07	31.0	0.0	1.6	1	1	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|379003264|ref|YP_005258936.1|	-	0.051	12.8	0.0	0.077	12.2	0.0	1.4	1	0	0	1	1	1	0	Putative	amidotransferase
Fe-ADH_2	PF13685.1	gi|379003265|ref|YP_005258937.1|	-	1.2e-58	198.4	0.6	1.8e-58	197.7	0.4	1.3	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|379003265|ref|YP_005258937.1|	-	2.2e-25	89.0	4.3	1.3e-23	83.2	3.0	2.5	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|379003265|ref|YP_005258937.1|	-	8.1e-08	31.5	0.8	2.5e-06	26.6	0.5	2.6	1	1	0	1	1	1	1	3-dehydroquinate	synthase
DNA_RNApol_7kD	PF03604.8	gi|379003267|ref|YP_005258939.1|	-	1.2e-06	27.8	4.1	2.9e-06	26.6	2.8	1.6	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-C2H2	PF00096.21	gi|379003267|ref|YP_005258939.1|	-	0.00061	19.9	2.1	0.035	14.4	0.1	2.1	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|379003267|ref|YP_005258939.1|	-	0.00094	19.3	1.1	0.74	10.2	0.1	2.1	2	0	0	2	2	2	2	C2H2-type	zinc	finger
DUF2072	PF09845.4	gi|379003267|ref|YP_005258939.1|	-	0.0028	17.5	0.1	0.0028	17.5	0.1	1.1	1	0	0	1	1	1	1	Zn-ribbon	containing	protein	(DUF2072)
zf-CSL	PF05207.8	gi|379003267|ref|YP_005258939.1|	-	0.014	14.8	0.5	0.017	14.5	0.3	1.2	1	0	0	1	1	1	0	CSL	zinc	finger
zf-H2C2_2	PF13465.1	gi|379003267|ref|YP_005258939.1|	-	0.029	14.6	1.7	3.9	7.9	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
HypA	PF01155.14	gi|379003267|ref|YP_005258939.1|	-	0.04	13.6	0.1	0.04	13.6	0.1	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
C1_1	PF00130.17	gi|379003267|ref|YP_005258939.1|	-	0.052	13.2	0.3	0.068	12.9	0.2	1.1	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DZR	PF12773.2	gi|379003267|ref|YP_005258939.1|	-	0.055	13.2	0.6	4.9	7.0	0.0	2.0	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|379003267|ref|YP_005258939.1|	-	0.085	12.5	0.8	0.12	12.1	0.5	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-CHY	PF05495.7	gi|379003267|ref|YP_005258939.1|	-	0.09	12.9	0.1	0.099	12.8	0.1	1.1	1	0	0	1	1	1	0	CHY	zinc	finger
FANCL_C	PF11793.3	gi|379003267|ref|YP_005258939.1|	-	0.096	12.6	0.3	0.15	12.0	0.1	1.4	1	1	0	1	1	1	0	FANCL	C-terminal	domain
C1_3	PF07649.7	gi|379003267|ref|YP_005258939.1|	-	0.13	12.3	1.5	6	6.9	0.0	2.1	2	0	0	2	2	2	0	C1-like	domain
zf-RING_3	PF14369.1	gi|379003267|ref|YP_005258939.1|	-	0.13	12.2	1.7	0.24	11.4	1.2	1.5	1	1	0	1	1	1	0	zinc-finger
zf-ISL3	PF14690.1	gi|379003267|ref|YP_005258939.1|	-	0.14	12.2	1.1	0.6	10.1	0.1	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Cys_rich_KTR	PF14205.1	gi|379003267|ref|YP_005258939.1|	-	0.14	11.6	0.5	0.14	11.6	0.4	1.7	2	0	0	2	2	2	0	Cysteine-rich	KTR
HNH	PF01844.18	gi|379003267|ref|YP_005258939.1|	-	0.19	11.6	0.7	16	5.4	0.1	2.1	2	0	0	2	2	2	0	HNH	endonuclease
zf-ribbon_3	PF13248.1	gi|379003267|ref|YP_005258939.1|	-	0.19	10.9	1.0	4.4	6.6	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-BED	PF02892.10	gi|379003267|ref|YP_005258939.1|	-	0.22	11.3	3.1	7.8	6.3	0.1	2.1	1	1	1	2	2	2	0	BED	zinc	finger
zinc_ribbon_4	PF13717.1	gi|379003267|ref|YP_005258939.1|	-	0.23	11.1	1.6	4.7	6.9	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379003267|ref|YP_005258939.1|	-	0.23	11.0	1.6	4.3	6.9	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Cas_CXXC_CXXC	PF09706.5	gi|379003267|ref|YP_005258939.1|	-	0.24	11.6	1.2	3.2	7.9	0.0	2.1	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_CXXC_CXXC)
TFIIS_C	PF01096.13	gi|379003267|ref|YP_005258939.1|	-	0.25	10.9	1.2	4	7.1	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS1595	PF12760.2	gi|379003267|ref|YP_005258939.1|	-	0.32	10.8	3.6	6.5	6.6	0.2	2.1	1	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003267|ref|YP_005258939.1|	-	0.34	10.4	2.3	9.1	5.9	0.3	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
PyrI_C	PF02748.10	gi|379003267|ref|YP_005258939.1|	-	0.35	10.3	2.6	9.8	5.7	0.2	2.1	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-C2H2_6	PF13912.1	gi|379003267|ref|YP_005258939.1|	-	0.44	10.5	0.3	0.44	10.5	0.2	1.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2HC_2	PF13913.1	gi|379003267|ref|YP_005258939.1|	-	0.54	9.9	6.3	1.4	8.7	0.3	2.3	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DUF2296	PF10058.4	gi|379003267|ref|YP_005258939.1|	-	2.4	7.9	4.6	30	4.4	3.2	2.0	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
CTP_transf_2	PF01467.21	gi|379003268|ref|YP_005258940.1|	-	2.4e-10	40.7	0.0	3.4e-10	40.1	0.0	1.3	1	0	0	1	1	1	1	Cytidylyltransferase
Ank_3	PF13606.1	gi|379003268|ref|YP_005258940.1|	-	0.13	12.6	0.0	23	5.5	0.0	2.8	2	0	0	2	2	2	0	Ankyrin	repeat
HIGH_NTase1	PF05636.6	gi|379003268|ref|YP_005258940.1|	-	0.14	11.1	0.0	1.4	7.8	0.0	1.9	2	0	0	2	2	2	0	HIGH	Nucleotidyl	Transferase
Arginase	PF00491.16	gi|379003269|ref|YP_005258941.1|	-	1.6e-59	201.5	0.0	1.8e-59	201.3	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
Cation_efflux	PF01545.16	gi|379003270|ref|YP_005258942.1|	-	8e-39	133.4	10.7	9.4e-39	133.1	7.4	1.0	1	0	0	1	1	1	1	Cation	efflux	family
Herpes_UL43	PF05072.8	gi|379003270|ref|YP_005258942.1|	-	0.26	10.0	8.1	1.1	7.9	0.8	2.2	2	0	0	2	2	2	0	Herpesvirus	UL43	protein
tRNA-synt_2b	PF00587.20	gi|379003271|ref|YP_005258943.1|	-	5.9e-47	159.4	0.0	1e-46	158.6	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|379003271|ref|YP_005258943.1|	-	2.7e-18	65.6	0.0	6.8e-18	64.3	0.0	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
zinc_ribbon_2	PF13240.1	gi|379003271|ref|YP_005258943.1|	-	0.066	12.7	2.2	8.5	6.0	0.1	2.6	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2HC_2	PF13913.1	gi|379003271|ref|YP_005258943.1|	-	0.21	11.2	1.8	2	8.1	0.0	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-ribbon_3	PF13248.1	gi|379003271|ref|YP_005258943.1|	-	2.7	7.3	5.7	2	7.7	0.2	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
tRNA_int_endo	PF01974.12	gi|379003273|ref|YP_005258945.1|	-	4.2e-25	87.3	0.5	7.3e-25	86.5	0.0	1.6	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|379003273|ref|YP_005258945.1|	-	6.9e-22	76.7	0.5	1e-21	76.2	0.4	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.2	gi|379003273|ref|YP_005258945.1|	-	0.0005	19.4	0.1	0.001	18.5	0.1	1.6	1	0	0	1	1	1	1	tRNA-splicing	endonuclease	subunit	sen54	N-term
HSP20	PF00011.16	gi|379003274|ref|YP_005258946.1|	-	2.9e-10	39.9	0.0	3.5e-10	39.6	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
zinc_ribbon_5	PF13719.1	gi|379003275|ref|YP_005258947.1|	-	5.5e-06	25.8	1.4	0.042	13.4	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003275|ref|YP_005258947.1|	-	3.3e-05	23.4	1.7	0.18	11.5	0.1	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
CpXC	PF14353.1	gi|379003275|ref|YP_005258947.1|	-	4.2e-05	23.5	0.2	0.17	11.8	0.0	2.1	2	0	0	2	2	2	2	CpXC	protein
zf-C2HC_2	PF13913.1	gi|379003275|ref|YP_005258947.1|	-	0.00017	21.1	4.4	0.0068	16.0	0.7	2.2	2	0	0	2	2	2	1	zinc-finger	of	a	C2HC-type
Cys_rich_CPXG	PF14255.1	gi|379003275|ref|YP_005258947.1|	-	0.0002	21.0	2.1	0.0013	18.5	1.5	1.9	1	1	0	1	1	1	1	Cysteine-rich	CPXCG
zf-ribbon_3	PF13248.1	gi|379003275|ref|YP_005258947.1|	-	0.0006	18.9	1.2	0.24	10.6	0.2	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|379003275|ref|YP_005258947.1|	-	0.00085	19.4	1.5	0.63	10.4	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	double	domain
TF_Zn_Ribbon	PF08271.7	gi|379003275|ref|YP_005258947.1|	-	0.0031	16.7	2.1	0.51	9.7	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379003275|ref|YP_005258947.1|	-	0.0032	16.8	2.2	0.51	9.8	0.3	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Trm112p	PF03966.11	gi|379003275|ref|YP_005258947.1|	-	0.0032	17.7	2.4	0.056	13.8	1.6	2.2	1	1	0	1	1	1	1	Trm112p-like	protein
zf-Di19	PF05605.7	gi|379003275|ref|YP_005258947.1|	-	0.0037	17.3	2.8	0.077	13.1	0.2	2.1	2	0	0	2	2	2	1	Drought	induced	19	protein	(Di19),	zinc-binding
Elf1	PF05129.8	gi|379003275|ref|YP_005258947.1|	-	0.0039	16.8	0.0	0.0053	16.4	0.0	1.2	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
zf-IS66	PF13005.2	gi|379003275|ref|YP_005258947.1|	-	0.0082	16.1	0.3	1.5	8.8	0.0	2.2	2	0	0	2	2	2	1	zinc-finger	binding	domain	of	transposase	IS66
zf-AN1	PF01428.11	gi|379003275|ref|YP_005258947.1|	-	0.0085	15.9	1.6	2.6	8.0	0.1	2.1	2	0	0	2	2	2	1	AN1-like	Zinc	finger
T4_baseplate	PF12322.3	gi|379003275|ref|YP_005258947.1|	-	0.01	15.1	0.2	1.5	8.0	0.0	2.0	1	1	1	2	2	2	0	T4	bacteriophage	base	plate	protein
zf-C2H2_4	PF13894.1	gi|379003275|ref|YP_005258947.1|	-	0.011	16.0	3.4	2	8.9	0.3	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|379003275|ref|YP_005258947.1|	-	0.012	15.8	5.2	0.2	12.0	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-RING_2	PF13639.1	gi|379003275|ref|YP_005258947.1|	-	0.014	15.2	0.1	0.021	14.6	0.1	1.4	1	0	0	1	1	1	0	Ring	finger	domain
TerY-C	PF15616.1	gi|379003275|ref|YP_005258947.1|	-	0.014	15.3	0.5	0.1	12.5	0.4	1.9	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
FYDLN_acid	PF09538.5	gi|379003275|ref|YP_005258947.1|	-	0.014	15.9	0.6	1.7	9.2	0.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf-C2H2_6	PF13912.1	gi|379003275|ref|YP_005258947.1|	-	0.015	15.2	1.5	1.9	8.4	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
HypA	PF01155.14	gi|379003275|ref|YP_005258947.1|	-	0.015	14.9	0.0	0.018	14.7	0.0	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|379003275|ref|YP_005258947.1|	-	0.017	15.1	0.7	2.4	8.2	0.1	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-CHCC	PF10276.4	gi|379003275|ref|YP_005258947.1|	-	0.02	14.7	1.0	0.78	9.6	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	domain
IBR	PF01485.16	gi|379003275|ref|YP_005258947.1|	-	0.021	14.6	1.3	0.052	13.4	0.9	1.6	1	1	0	1	1	1	0	IBR	domain
zf-C3HC4_3	PF13920.1	gi|379003275|ref|YP_005258947.1|	-	0.026	14.1	0.3	1.9	8.1	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
A2L_zn_ribbon	PF08792.5	gi|379003275|ref|YP_005258947.1|	-	0.031	13.7	1.4	0.7	9.4	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|379003275|ref|YP_005258947.1|	-	0.036	13.5	0.6	5.2	6.6	0.1	2.1	2	0	0	2	2	2	0	InsA	N-terminal	domain
Cys_rich_KTR	PF14205.1	gi|379003275|ref|YP_005258947.1|	-	0.046	13.1	0.1	0.07	12.5	0.1	1.3	1	0	0	1	1	1	0	Cysteine-rich	KTR
Rad50_zn_hook	PF04423.9	gi|379003275|ref|YP_005258947.1|	-	0.049	13.1	0.9	4.7	6.7	0.1	2.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
ADK_lid	PF05191.9	gi|379003275|ref|YP_005258947.1|	-	0.052	13.2	3.8	0.85	9.3	0.1	2.4	3	0	0	3	3	2	0	Adenylate	kinase,	active	site	lid
Lar_restr_allev	PF14354.1	gi|379003275|ref|YP_005258947.1|	-	0.058	13.7	1.3	0.083	13.1	0.9	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-FCS	PF06467.9	gi|379003275|ref|YP_005258947.1|	-	0.073	12.7	0.8	0.6	9.8	0.1	2.1	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-DNL	PF05180.7	gi|379003275|ref|YP_005258947.1|	-	0.083	12.6	0.3	0.1	12.3	0.2	1.1	1	0	0	1	1	1	0	DNL	zinc	finger
Sgf11	PF08209.6	gi|379003275|ref|YP_005258947.1|	-	0.085	12.1	2.5	1	8.7	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-RING_4	PF14570.1	gi|379003275|ref|YP_005258947.1|	-	0.09	12.3	1.0	1.9	8.1	0.1	2.1	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
DZR	PF12773.2	gi|379003275|ref|YP_005258947.1|	-	0.091	12.5	1.9	0.54	10.1	1.3	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|379003275|ref|YP_005258947.1|	-	0.094	12.5	0.1	3.6	7.4	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbons
C1_4	PF07975.7	gi|379003275|ref|YP_005258947.1|	-	0.094	12.7	1.0	1.9	8.5	0.1	2.1	1	1	1	2	2	2	0	TFIIH	C1-like	domain
UPF0547	PF10571.4	gi|379003275|ref|YP_005258947.1|	-	0.1	12.3	2.0	4.7	6.9	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF329	PF03884.9	gi|379003275|ref|YP_005258947.1|	-	0.12	11.9	0.2	10	5.7	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-RING_3	PF14369.1	gi|379003275|ref|YP_005258947.1|	-	0.12	12.3	5.5	2.5	8.1	0.2	2.2	1	1	1	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|379003275|ref|YP_005258947.1|	-	0.12	12.3	3.8	1.2	9.0	2.6	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
TFIIS_C	PF01096.13	gi|379003275|ref|YP_005258947.1|	-	0.22	11.2	2.9	9.1	6.0	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-BED	PF02892.10	gi|379003275|ref|YP_005258947.1|	-	0.31	10.8	1.6	1.2	8.9	0.1	2.0	1	1	1	2	2	2	0	BED	zinc	finger
DUF35_N	PF12172.3	gi|379003275|ref|YP_005258947.1|	-	0.35	10.8	3.3	12	5.9	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF2256	PF10013.4	gi|379003275|ref|YP_005258947.1|	-	0.42	10.3	3.1	9.7	6.0	0.2	2.3	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
FANCL_C	PF11793.3	gi|379003275|ref|YP_005258947.1|	-	0.57	10.1	3.0	0.73	9.8	0.1	2.0	1	1	1	2	2	2	0	FANCL	C-terminal	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003275|ref|YP_005258947.1|	-	0.6	9.9	5.4	6.2	6.7	0.4	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-CCHC_5	PF14787.1	gi|379003275|ref|YP_005258947.1|	-	0.9	9.0	3.4	4.9	6.7	0.4	2.2	2	0	0	2	2	2	0	GAG-polyprotein	viral	zinc-finger
OrfB_Zn_ribbon	PF07282.6	gi|379003275|ref|YP_005258947.1|	-	0.99	9.1	3.0	9.2	6.0	0.2	2.1	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Rubredoxin	PF00301.15	gi|379003275|ref|YP_005258947.1|	-	5.8	6.8	7.1	3.3	7.6	2.5	2.3	2	1	0	2	2	2	0	Rubredoxin
Nitroreductase	PF00881.19	gi|379003276|ref|YP_005258948.1|	-	7.8e-28	97.3	0.0	1.1e-27	96.8	0.0	1.3	1	0	0	1	1	1	1	Nitroreductase	family
TM1586_NiRdase	PF14512.1	gi|379003276|ref|YP_005258948.1|	-	0.0055	15.9	0.1	0.064	12.4	0.1	2.1	2	0	0	2	2	2	1	Putative	TM	nitroreductase
Actin	PF00022.14	gi|379003278|ref|YP_005258950.1|	-	1.4e-10	40.2	0.0	2.3e-10	39.4	0.0	1.2	1	0	0	1	1	1	1	Actin
OmpH	PF03938.9	gi|379003279|ref|YP_005258951.1|	-	0.054	13.4	2.0	0.088	12.7	1.4	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
SNAP	PF14938.1	gi|379003280|ref|YP_005258952.1|	-	0.049	12.7	0.0	0.05	12.7	0.0	1.0	1	0	0	1	1	1	0	Soluble	NSF	attachment	protein,	SNAP
SMC_N	PF02463.14	gi|379003281|ref|YP_005258953.1|	-	2.6e-19	69.3	0.0	1.1e-18	67.2	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379003281|ref|YP_005258953.1|	-	1.1e-14	55.2	0.0	1.1e-14	55.2	0.0	4.3	2	2	2	4	4	3	1	AAA	domain
AAA_13	PF13166.1	gi|379003281|ref|YP_005258953.1|	-	2.7e-09	36.0	25.0	6.6e-06	24.8	1.1	3.9	2	1	2	4	4	4	3	AAA	domain
AAA_15	PF13175.1	gi|379003281|ref|YP_005258953.1|	-	2.6e-08	33.3	0.0	0.00074	18.6	0.0	2.6	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_21	PF13304.1	gi|379003281|ref|YP_005258953.1|	-	8.7e-06	25.9	0.2	0.00045	20.2	0.0	2.8	3	1	0	3	3	3	1	AAA	domain
AAA_29	PF13555.1	gi|379003281|ref|YP_005258953.1|	-	4.8e-05	22.8	0.0	9.4e-05	21.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Nsp1_C	PF05064.8	gi|379003281|ref|YP_005258953.1|	-	0.0017	18.0	1.9	0.0017	18.0	1.4	4.3	3	2	3	6	6	5	1	Nsp1-like	C-terminal	region
Mnd1	PF03962.10	gi|379003281|ref|YP_005258953.1|	-	0.0021	17.7	1.4	0.0021	17.7	1.0	4.4	3	1	0	4	4	4	2	Mnd1	family
ABC_tran	PF00005.22	gi|379003281|ref|YP_005258953.1|	-	0.0031	17.8	1.0	6.7	7.0	0.0	4.1	2	1	0	2	2	2	1	ABC	transporter
GAS	PF13851.1	gi|379003281|ref|YP_005258953.1|	-	0.0054	15.9	5.8	0.0054	15.9	4.0	4.5	3	1	0	4	4	4	2	Growth-arrest	specific	micro-tubule	binding
AAA_27	PF13514.1	gi|379003281|ref|YP_005258953.1|	-	0.013	13.2	68.2	0.0032	15.2	33.0	3.9	2	1	1	4	4	4	0	AAA	domain
Cauli_AT	PF03233.8	gi|379003281|ref|YP_005258953.1|	-	0.067	12.8	17.0	0.37	10.4	1.5	4.2	4	1	0	4	4	4	0	Aphid	transmission	protein
Fib_alpha	PF08702.5	gi|379003281|ref|YP_005258953.1|	-	0.14	12.2	23.3	2.9	7.9	0.8	4.7	4	1	0	4	4	4	0	Fibrinogen	alpha/beta	chain	family
FliD_C	PF07195.7	gi|379003281|ref|YP_005258953.1|	-	0.15	11.3	10.7	0.13	11.5	0.4	3.6	3	1	0	3	3	3	0	Flagellar	hook-associated	protein	2	C-terminus
FlaC_arch	PF05377.6	gi|379003281|ref|YP_005258953.1|	-	0.23	11.3	30.0	0.51	10.2	0.0	7.8	7	2	1	8	8	8	0	Flagella	accessory	protein	C	(FlaC)
Reo_sigmaC	PF04582.7	gi|379003281|ref|YP_005258953.1|	-	0.24	10.5	13.4	3.4	6.7	0.1	4.6	2	2	3	5	5	5	0	Reovirus	sigma	C	capsid	protein
BLOC1_2	PF10046.4	gi|379003281|ref|YP_005258953.1|	-	0.88	9.7	33.2	0.11	12.6	1.2	6.2	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
IncA	PF04156.9	gi|379003281|ref|YP_005258953.1|	-	1.2	8.6	67.3	0.36	10.4	6.9	4.5	1	1	3	4	4	4	0	IncA	protein
Synaptobrevin	PF00957.16	gi|379003281|ref|YP_005258953.1|	-	1.9	8.1	10.8	12	5.5	0.7	4.0	2	1	1	3	3	3	0	Synaptobrevin
TPR_MLP1_2	PF07926.7	gi|379003281|ref|YP_005258953.1|	-	6.5	6.5	51.6	0.21	11.3	10.8	4.8	3	1	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
Colicin	PF01024.14	gi|379003281|ref|YP_005258953.1|	-	7.5	6.0	16.4	0.51	9.8	1.3	3.5	3	2	0	3	3	3	0	Colicin	pore	forming	domain
TrmB	PF01978.14	gi|379003282|ref|YP_005258954.1|	-	3.8e-19	68.1	0.5	9.5e-18	63.6	0.0	2.6	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|379003282|ref|YP_005258954.1|	-	1.2e-06	28.1	0.2	2.4e-06	27.2	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379003282|ref|YP_005258954.1|	-	8.7e-06	25.3	0.0	3e-05	23.5	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|379003282|ref|YP_005258954.1|	-	1.6e-05	24.1	0.1	3.4e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|379003282|ref|YP_005258954.1|	-	0.0012	18.4	0.1	0.0026	17.3	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|379003282|ref|YP_005258954.1|	-	0.003	17.8	0.1	0.007	16.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|379003282|ref|YP_005258954.1|	-	0.008	15.8	0.1	0.018	14.6	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|379003282|ref|YP_005258954.1|	-	0.011	15.7	0.0	0.017	15.1	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|379003282|ref|YP_005258954.1|	-	0.011	15.4	0.0	0.022	14.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Penicillinase_R	PF03965.11	gi|379003282|ref|YP_005258954.1|	-	0.021	14.8	0.0	0.045	13.8	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
MukE	PF04288.8	gi|379003282|ref|YP_005258954.1|	-	0.023	13.4	0.0	0.036	12.8	0.0	1.3	1	0	0	1	1	1	0	MukE-like	family
Regulator_TrmB	PF11495.3	gi|379003282|ref|YP_005258954.1|	-	0.024	13.6	1.9	0.14	11.0	1.3	2.0	1	1	0	1	1	1	0	Archaeal	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.5	gi|379003282|ref|YP_005258954.1|	-	0.035	13.6	0.0	0.069	12.7	0.0	1.4	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Rrf2	PF02082.15	gi|379003282|ref|YP_005258954.1|	-	0.041	13.9	0.0	0.11	12.6	0.0	1.7	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_28	PF13518.1	gi|379003282|ref|YP_005258954.1|	-	0.13	12.2	0.0	0.27	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HisKA	PF00512.20	gi|379003282|ref|YP_005258954.1|	-	0.28	11.1	1.4	1.5	8.8	0.1	2.7	2	1	1	3	3	3	0	His	Kinase	A	(phospho-acceptor)	domain
Radical_SAM	PF04055.16	gi|379003283|ref|YP_005258955.1|	-	1.8e-20	73.7	0.6	8.9e-20	71.5	0.0	2.3	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379003283|ref|YP_005258955.1|	-	2.2e-07	30.9	0.0	5.6e-07	29.5	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379003283|ref|YP_005258955.1|	-	2.7e-06	27.5	0.0	5.7e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
BCAS2	PF05700.6	gi|379003283|ref|YP_005258955.1|	-	0.084	12.3	0.0	0.14	11.5	0.0	1.3	1	0	0	1	1	1	0	Breast	carcinoma	amplified	sequence	2	(BCAS2)
PemK	PF02452.12	gi|379003284|ref|YP_005258956.1|	-	0.037	14.2	0.0	0.04	14.1	0.0	1.1	1	0	0	1	1	1	0	PemK-like	protein
Acetyltransf_1	PF00583.19	gi|379003285|ref|YP_005258957.1|	-	2.5e-09	37.0	0.0	4.1e-09	36.3	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|379003285|ref|YP_005258957.1|	-	1.5e-06	27.8	0.0	2.7e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|379003285|ref|YP_005258957.1|	-	8.9e-06	25.8	0.0	1.2e-05	25.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379003285|ref|YP_005258957.1|	-	4.3e-05	23.5	0.0	7.3e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|379003285|ref|YP_005258957.1|	-	9.9e-05	22.2	0.1	0.00015	21.6	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_13	PF13880.1	gi|379003285|ref|YP_005258957.1|	-	0.0071	16.0	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
Acetyltransf_CG	PF14542.1	gi|379003285|ref|YP_005258957.1|	-	0.012	15.4	0.1	0.041	13.7	0.1	1.8	2	0	0	2	2	2	0	GCN5-related	N-acetyl-transferase
Acetyltransf_8	PF13523.1	gi|379003285|ref|YP_005258957.1|	-	0.012	15.4	0.0	0.021	14.6	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|379003285|ref|YP_005258957.1|	-	0.037	13.9	0.0	0.058	13.3	0.0	1.4	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|379003285|ref|YP_005258957.1|	-	0.057	13.5	0.0	0.076	13.1	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Aldo_ket_red	PF00248.16	gi|379003286|ref|YP_005258958.1|	-	5.2e-70	235.4	0.0	5.8e-70	235.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Prolactin_RP	PF15172.1	gi|379003286|ref|YP_005258958.1|	-	0.018	14.2	0.0	0.045	12.9	0.0	1.6	1	0	0	1	1	1	0	Prolactin-releasing	peptide
ATP-grasp_5	PF13549.1	gi|379003287|ref|YP_005258959.1|	-	8.2e-77	257.3	0.4	9.3e-77	257.1	0.3	1.0	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379003287|ref|YP_005258959.1|	-	6.6e-09	35.7	0.1	8.7e-09	35.3	0.1	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_2	PF08442.5	gi|379003287|ref|YP_005258959.1|	-	4.3e-05	22.9	0.3	5.9e-05	22.5	0.2	1.3	1	1	0	1	1	1	1	ATP-grasp	domain
RimK	PF08443.6	gi|379003287|ref|YP_005258959.1|	-	0.00011	21.7	0.0	0.00016	21.1	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|379003287|ref|YP_005258959.1|	-	0.0039	16.5	0.0	0.0071	15.7	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|379003287|ref|YP_005258959.1|	-	0.039	13.2	0.0	0.067	12.4	0.0	1.4	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
GARS_A	PF01071.14	gi|379003287|ref|YP_005258959.1|	-	0.043	13.3	0.3	0.073	12.6	0.2	1.3	1	0	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
DUF1851	PF08906.6	gi|379003287|ref|YP_005258959.1|	-	0.12	12.3	0.0	0.29	11.1	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1851)
Dala_Dala_lig_C	PF07478.8	gi|379003287|ref|YP_005258959.1|	-	0.12	11.6	0.1	0.19	11.1	0.1	1.3	1	0	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
Succ_CoA_lig	PF13607.1	gi|379003288|ref|YP_005258960.1|	-	3.4e-50	169.2	1.1	1.1e-48	164.3	0.2	3.0	4	0	0	4	4	4	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|379003288|ref|YP_005258960.1|	-	4.2e-25	88.1	2.3	1.7e-24	86.2	0.4	2.7	3	0	0	3	3	3	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|379003288|ref|YP_005258960.1|	-	1.7e-12	47.6	0.5	5.6e-12	46.0	0.2	2.0	2	0	0	2	2	2	1	CoA	binding	domain
Peripla_BP_3	PF13377.1	gi|379003288|ref|YP_005258960.1|	-	0.00021	21.3	0.1	0.52	10.3	0.0	2.7	2	0	0	2	2	2	2	Periplasmic	binding	protein-like	domain
FMN_red	PF03358.10	gi|379003288|ref|YP_005258960.1|	-	0.016	14.7	0.3	1.5	8.3	0.0	3.4	4	0	0	4	4	4	0	NADPH-dependent	FMN	reductase
DUF348	PF03990.9	gi|379003288|ref|YP_005258960.1|	-	0.017	14.6	0.5	0.16	11.5	0.1	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF348)
NAD_Gly3P_dh_N	PF01210.18	gi|379003288|ref|YP_005258960.1|	-	0.018	14.7	0.0	0.049	13.3	0.0	1.7	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Ligase_CoA	PF00549.14	gi|379003288|ref|YP_005258960.1|	-	0.087	12.4	0.0	0.19	11.3	0.0	1.6	1	0	0	1	1	1	0	CoA-ligase
PaRep2b	PF07775.6	gi|379003289|ref|YP_005258961.1|	-	1.7e-05	23.2	0.0	1.7e-05	23.2	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
NERD	PF08378.6	gi|379003290|ref|YP_005258962.1|	-	0.0074	16.5	0.0	0.0096	16.1	0.0	1.2	1	0	0	1	1	1	1	Nuclease-related	domain
Hjc	PF01870.13	gi|379003290|ref|YP_005258962.1|	-	0.066	12.8	0.0	0.1	12.2	0.0	1.2	1	0	0	1	1	1	0	Archaeal	holliday	junction	resolvase	(hjc)
MS_channel	PF00924.13	gi|379003291|ref|YP_005258963.1|	-	8e-19	67.7	3.7	8e-19	67.7	2.6	1.6	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Gly-zipper_YMGG	PF13441.1	gi|379003291|ref|YP_005258963.1|	-	0.019	14.4	11.2	0.06	12.8	7.8	1.9	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
Gly-zipper_OmpA	PF13436.1	gi|379003291|ref|YP_005258963.1|	-	0.12	11.9	10.5	0.18	11.4	7.3	1.2	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
CobD_Cbib	PF03186.8	gi|379003291|ref|YP_005258963.1|	-	1.5	7.8	4.6	0.16	11.0	0.3	1.4	2	0	0	2	2	2	0	CobD/Cbib	protein
FtsX	PF02687.16	gi|379003291|ref|YP_005258963.1|	-	1.9	8.2	18.0	7.3	6.3	4.4	3.1	1	1	1	2	2	2	0	FtsX-like	permease	family
MNHE	PF01899.11	gi|379003291|ref|YP_005258963.1|	-	4.1	7.0	5.7	1.1	8.8	0.6	2.1	2	0	0	2	2	2	0	Na+/H+	ion	antiporter	subunit
Bacteriocin_IIc	PF10439.4	gi|379003291|ref|YP_005258963.1|	-	5.2	7.2	13.6	2	8.6	7.2	1.8	1	1	1	2	2	2	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
Gly-zipper_Omp	PF13488.1	gi|379003291|ref|YP_005258963.1|	-	5.2	6.7	18.3	15	5.3	12.3	2.1	1	1	0	1	1	1	0	Glycine	zipper
FeoB_N	PF02421.13	gi|379003292|ref|YP_005258964.1|	-	2.1e-10	40.0	0.0	2.8e-10	39.6	0.0	1.2	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Arf	PF00025.16	gi|379003292|ref|YP_005258964.1|	-	8.7e-08	31.6	0.0	1e-07	31.3	0.0	1.1	1	0	0	1	1	1	1	ADP-ribosylation	factor	family
Ras	PF00071.17	gi|379003292|ref|YP_005258964.1|	-	8.8e-08	31.6	0.0	1.5e-07	30.9	0.0	1.3	1	1	0	1	1	1	1	Ras	family
PduV-EutP	PF10662.4	gi|379003292|ref|YP_005258964.1|	-	4.9e-07	29.3	0.1	2.4e-06	27.1	0.1	2.0	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|379003292|ref|YP_005258964.1|	-	6.6e-05	22.8	0.0	8.5e-05	22.4	0.0	1.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|379003292|ref|YP_005258964.1|	-	9.2e-05	21.7	0.0	0.00011	21.4	0.0	1.2	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Miro	PF08477.8	gi|379003292|ref|YP_005258964.1|	-	0.00015	22.2	0.0	0.00025	21.5	0.0	1.4	1	0	0	1	1	1	1	Miro-like	protein
CbiA	PF01656.18	gi|379003292|ref|YP_005258964.1|	-	0.0072	15.7	0.6	0.15	11.4	0.1	2.2	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GTP_EFTU	PF00009.22	gi|379003292|ref|YP_005258964.1|	-	0.0072	15.7	0.1	0.073	12.5	0.0	2.2	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
DUF258	PF03193.11	gi|379003292|ref|YP_005258964.1|	-	0.022	13.9	0.2	0.05	12.7	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
NB-ARC	PF00931.17	gi|379003292|ref|YP_005258964.1|	-	0.024	13.5	0.7	0.035	12.9	0.5	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_14	PF13173.1	gi|379003292|ref|YP_005258964.1|	-	0.043	13.7	0.2	0.074	12.9	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379003292|ref|YP_005258964.1|	-	0.047	13.8	0.1	0.13	12.4	0.0	1.7	2	1	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|379003292|ref|YP_005258964.1|	-	0.058	13.0	0.4	0.099	12.2	0.2	1.4	1	1	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.1	gi|379003292|ref|YP_005258964.1|	-	0.072	12.9	0.0	0.12	12.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379003292|ref|YP_005258964.1|	-	0.075	12.1	0.1	0.1	11.7	0.1	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC_tran	PF00005.22	gi|379003292|ref|YP_005258964.1|	-	0.1	12.9	0.0	0.2	11.9	0.0	1.6	2	0	0	2	2	1	0	ABC	transporter
AAA_17	PF13207.1	gi|379003292|ref|YP_005258964.1|	-	0.23	12.2	2.1	1.5	9.6	1.4	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379003293|ref|YP_005258965.1|	-	7.1e-07	29.4	0.0	2.7e-06	27.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|379003293|ref|YP_005258965.1|	-	9.7e-07	28.3	0.0	3.4e-06	26.5	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
KaiC	PF06745.8	gi|379003293|ref|YP_005258965.1|	-	4.8e-06	25.8	0.0	0.00013	21.1	0.0	2.9	2	1	0	2	2	2	1	KaiC
AAA_17	PF13207.1	gi|379003293|ref|YP_005258965.1|	-	3.1e-05	24.7	0.0	0.0001	23.1	0.0	2.0	2	2	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|379003293|ref|YP_005258965.1|	-	8.9e-05	22.1	0.0	0.0024	17.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|379003293|ref|YP_005258965.1|	-	0.00013	21.6	0.0	0.00044	19.9	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379003293|ref|YP_005258965.1|	-	0.00076	19.5	0.0	0.0016	18.4	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|379003293|ref|YP_005258965.1|	-	0.00081	19.1	0.1	0.0056	16.4	0.1	2.1	1	1	0	1	1	1	1	Archaeal	ATPase
AAA	PF00004.24	gi|379003293|ref|YP_005258965.1|	-	0.0011	19.1	0.0	0.002	18.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
GvpD	PF07088.6	gi|379003293|ref|YP_005258965.1|	-	0.0012	17.3	0.0	0.23	9.7	0.0	2.5	2	1	0	2	2	2	1	GvpD	gas	vesicle	protein
Ligase_CoA	PF00549.14	gi|379003293|ref|YP_005258965.1|	-	0.0026	17.3	0.1	0.0045	16.6	0.0	1.3	1	0	0	1	1	1	1	CoA-ligase
RNA_helicase	PF00910.17	gi|379003293|ref|YP_005258965.1|	-	0.0054	16.8	0.0	0.0097	16.0	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
AAA_5	PF07728.9	gi|379003293|ref|YP_005258965.1|	-	0.0065	16.2	0.0	0.071	12.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|379003293|ref|YP_005258965.1|	-	0.0069	16.6	0.0	0.035	14.4	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_11	PF13086.1	gi|379003293|ref|YP_005258965.1|	-	0.0079	15.7	0.0	0.0095	15.5	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|379003293|ref|YP_005258965.1|	-	0.0087	15.1	0.0	0.019	14.0	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
Bac_DnaA	PF00308.13	gi|379003293|ref|YP_005258965.1|	-	0.016	14.8	0.0	0.035	13.7	0.0	1.6	1	1	0	1	1	1	0	Bacterial	dnaA	protein
NACHT	PF05729.7	gi|379003293|ref|YP_005258965.1|	-	0.03	13.9	0.0	0.15	11.7	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_33	PF13671.1	gi|379003293|ref|YP_005258965.1|	-	0.031	14.1	0.0	0.049	13.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
CobU	PF02283.11	gi|379003293|ref|YP_005258965.1|	-	0.039	13.3	0.0	0.089	12.2	0.0	1.7	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
SRP54	PF00448.17	gi|379003293|ref|YP_005258965.1|	-	0.053	12.9	0.0	0.24	10.8	0.0	2.1	3	0	0	3	3	3	0	SRP54-type	protein,	GTPase	domain
AAA_23	PF13476.1	gi|379003293|ref|YP_005258965.1|	-	0.058	13.7	0.0	0.13	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379003293|ref|YP_005258965.1|	-	0.071	12.5	0.0	0.24	10.7	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
SMC_N	PF02463.14	gi|379003293|ref|YP_005258965.1|	-	0.076	12.2	0.0	0.16	11.2	0.0	1.5	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_14	PF13173.1	gi|379003293|ref|YP_005258965.1|	-	0.083	12.7	0.0	0.21	11.5	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
Inositol_P	PF00459.20	gi|379003294|ref|YP_005258966.1|	-	3.5e-19	69.1	0.0	4.4e-19	68.8	0.0	1.1	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|379003294|ref|YP_005258966.1|	-	0.0053	15.6	0.0	0.0074	15.1	0.0	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
SWIM	PF04434.12	gi|379003295|ref|YP_005258967.1|	-	0.0038	16.6	0.2	0.0064	15.9	0.1	1.3	1	0	0	1	1	1	1	SWIM	zinc	finger
Pribosyltran	PF00156.22	gi|379003297|ref|YP_005258969.1|	-	1.8e-20	72.9	0.1	2.6e-20	72.3	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|379003297|ref|YP_005258969.1|	-	0.0034	16.6	0.0	0.0045	16.2	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
MoeA_N	PF03453.12	gi|379003298|ref|YP_005258970.1|	-	1.5e-39	134.9	2.0	7.7e-39	132.6	0.7	2.1	2	0	0	2	2	2	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|379003298|ref|YP_005258970.1|	-	1.4e-17	63.4	0.1	3.8e-17	62.0	0.0	1.8	2	1	0	2	2	2	1	Probable	molybdopterin	binding	domain
Elf1	PF05129.8	gi|379003299|ref|YP_005258971.1|	-	5.1e-19	67.7	0.0	6.2e-19	67.4	0.0	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.1	gi|379003299|ref|YP_005258971.1|	-	1.7e-05	25.0	0.2	2.4e-05	24.5	0.1	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
TF_Zn_Ribbon	PF08271.7	gi|379003299|ref|YP_005258971.1|	-	0.0018	17.5	1.5	0.0029	16.8	1.1	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379003299|ref|YP_005258971.1|	-	0.0021	17.4	3.7	0.013	14.9	2.8	1.9	1	1	1	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003299|ref|YP_005258971.1|	-	0.0021	17.1	5.0	0.017	14.3	3.6	2.0	1	1	1	2	2	2	1	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|379003299|ref|YP_005258971.1|	-	0.0033	16.8	1.1	0.0066	15.9	0.7	1.6	1	0	0	1	1	1	1	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_4	PF13717.1	gi|379003299|ref|YP_005258971.1|	-	0.0043	16.7	0.3	2.3	7.9	0.1	2.3	2	0	0	2	2	2	1	zinc-ribbon	domain
Ribosomal_L32p	PF01783.18	gi|379003299|ref|YP_005258971.1|	-	0.0046	17.1	4.2	0.1	12.7	2.9	2.1	1	1	0	1	1	1	1	Ribosomal	L32p	protein	family
DZR	PF12773.2	gi|379003299|ref|YP_005258971.1|	-	0.0055	16.4	0.3	0.0099	15.6	0.2	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|379003299|ref|YP_005258971.1|	-	0.0064	16.3	0.5	0.34	10.8	0.0	2.3	2	0	0	2	2	2	1	Rubredoxin
Zn_ribbon_recom	PF13408.1	gi|379003299|ref|YP_005258971.1|	-	0.0087	16.3	4.1	0.55	10.5	0.1	2.3	1	1	1	2	2	2	1	Recombinase	zinc	beta	ribbon	domain
DUF2296	PF10058.4	gi|379003299|ref|YP_005258971.1|	-	0.0097	15.6	0.1	2.7	7.8	0.0	2.2	2	0	0	2	2	2	1	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zinc_ribbon_5	PF13719.1	gi|379003299|ref|YP_005258971.1|	-	0.011	15.3	1.5	0.28	10.8	0.8	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379003299|ref|YP_005258971.1|	-	0.011	15.3	0.4	0.021	14.4	0.3	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.5	gi|379003299|ref|YP_005258971.1|	-	0.012	15.0	1.6	0.021	14.2	1.1	1.4	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003299|ref|YP_005258971.1|	-	0.014	15.1	3.4	0.24	11.2	2.3	2.1	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|379003299|ref|YP_005258971.1|	-	0.03	13.8	0.5	0.26	10.8	0.4	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|379003299|ref|YP_005258971.1|	-	0.045	13.4	0.2	0.08	12.6	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
zf-HYPF	PF07503.7	gi|379003299|ref|YP_005258971.1|	-	0.069	12.5	0.4	1.3	8.4	0.1	2.2	2	0	0	2	2	2	0	HypF	finger
zf-IS66	PF13005.2	gi|379003299|ref|YP_005258971.1|	-	0.073	13.0	1.1	0.48	10.4	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-LITAF-like	PF10601.4	gi|379003299|ref|YP_005258971.1|	-	0.073	12.9	0.3	0.11	12.3	0.2	1.3	1	0	0	1	1	1	0	LITAF-like	zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|379003299|ref|YP_005258971.1|	-	0.081	12.9	3.9	0.14	12.2	0.2	2.4	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Desulfoferrod_N	PF06397.7	gi|379003299|ref|YP_005258971.1|	-	0.082	12.3	2.1	0.13	11.7	1.5	1.3	1	0	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
DUF164	PF02591.10	gi|379003299|ref|YP_005258971.1|	-	0.13	12.0	1.9	0.67	9.8	0.1	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
GFA	PF04828.9	gi|379003299|ref|YP_005258971.1|	-	0.16	11.9	0.6	1.1	9.1	0.7	1.9	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-H2C2_2	PF13465.1	gi|379003299|ref|YP_005258971.1|	-	0.16	12.3	2.8	0.62	10.4	0.7	2.2	1	1	1	2	2	2	0	Zinc-finger	double	domain
zf-C2H2_6	PF13912.1	gi|379003299|ref|YP_005258971.1|	-	0.16	11.8	2.0	3.7	7.5	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-RING_3	PF14369.1	gi|379003299|ref|YP_005258971.1|	-	0.21	11.5	0.9	0.49	10.4	0.1	2.0	1	1	1	2	2	2	0	zinc-finger
Zn-ribbon_8	PF09723.5	gi|379003299|ref|YP_005258971.1|	-	0.25	11.3	2.2	1.3	9.0	1.3	2.1	1	1	2	3	3	3	0	Zinc	ribbon	domain
ADK_lid	PF05191.9	gi|379003299|ref|YP_005258971.1|	-	0.3	10.7	1.4	17	5.1	0.1	2.4	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-Di19	PF05605.7	gi|379003299|ref|YP_005258971.1|	-	0.39	10.8	2.3	1.2	9.3	1.6	1.8	1	1	0	1	1	1	0	Drought	induced	19	protein	(Di19),	zinc-binding
Prok-RING_1	PF14446.1	gi|379003299|ref|YP_005258971.1|	-	0.44	10.3	2.1	2.1	8.1	1.5	1.8	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-Mss51	PF13824.1	gi|379003299|ref|YP_005258971.1|	-	0.72	9.7	2.6	5.2	7.0	2.1	1.9	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1610	PF07754.6	gi|379003299|ref|YP_005258971.1|	-	1.2	9.3	0.1	1.2	9.3	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
PcrB	PF01884.12	gi|379003300|ref|YP_005258972.1|	-	3e-59	200.0	0.0	3.3e-59	199.9	0.0	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|379003300|ref|YP_005258972.1|	-	1.6e-05	24.3	0.0	3e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
B12-binding	PF02310.14	gi|379003300|ref|YP_005258972.1|	-	0.0097	15.7	0.6	3.2	7.6	0.1	3.2	3	1	1	4	4	4	1	B12	binding	domain
TMP-TENI	PF02581.12	gi|379003300|ref|YP_005258972.1|	-	0.098	11.7	0.2	0.44	9.6	0.0	2.1	3	0	0	3	3	3	0	Thiamine	monophosphate	synthase/TENI
Ribosomal_L39	PF00832.15	gi|379003301|ref|YP_005258973.1|	-	1e-17	63.2	11.0	1.3e-17	62.9	7.7	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
dsDNA_bind	PF01984.15	gi|379003302|ref|YP_005258974.1|	-	3.4e-26	91.3	10.3	3.7e-26	91.1	7.1	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
SDA1	PF05285.7	gi|379003302|ref|YP_005258974.1|	-	0.008	15.4	2.5	0.0083	15.4	1.7	1.1	1	0	0	1	1	1	1	SDA1
FHIPEP	PF00771.15	gi|379003302|ref|YP_005258974.1|	-	0.02	13.2	2.8	0.023	13.0	2.0	1.0	1	0	0	1	1	1	0	FHIPEP	family
YopR_core	PF09025.5	gi|379003302|ref|YP_005258974.1|	-	0.022	14.7	1.4	0.027	14.4	0.9	1.2	1	0	0	1	1	1	0	YopR	Core
Radial_spoke_3	PF06098.6	gi|379003302|ref|YP_005258974.1|	-	0.056	12.4	3.5	0.065	12.2	2.4	1.1	1	0	0	1	1	1	0	Radial	spoke	protein	3
Ribosomal_S19e	PF01090.14	gi|379003303|ref|YP_005258975.1|	-	6.4e-53	177.9	0.0	7.4e-53	177.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
RuvB_C	PF05491.8	gi|379003303|ref|YP_005258975.1|	-	0.00096	18.7	0.0	0.017	14.7	0.0	2.2	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_45	PF14947.1	gi|379003303|ref|YP_005258975.1|	-	0.0021	17.8	0.0	0.0034	17.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_12	PF08461.5	gi|379003303|ref|YP_005258975.1|	-	0.067	12.9	0.1	0.14	11.9	0.1	1.5	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
TFIIS_C	PF01096.13	gi|379003304|ref|YP_005258976.1|	-	1.6e-22	78.8	8.3	1.8e-21	75.4	3.0	2.2	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
PhnA_Zn_Ribbon	PF08274.7	gi|379003304|ref|YP_005258976.1|	-	1.2e-07	31.3	0.2	0.0047	16.6	0.0	2.9	2	1	0	2	2	2	2	PhnA	Zinc-Ribbon
Zn_Tnp_IS1595	PF12760.2	gi|379003304|ref|YP_005258976.1|	-	3.6e-07	29.8	6.8	0.00025	20.7	2.4	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|379003304|ref|YP_005258976.1|	-	8.3e-06	25.3	0.2	8.3e-06	25.3	0.1	3.0	3	0	0	3	3	3	1	RNA	polymerases	M/15	Kd	subunit
TF_Zn_Ribbon	PF08271.7	gi|379003304|ref|YP_005258976.1|	-	1.4e-05	24.2	4.9	0.0066	15.7	0.2	2.8	2	2	0	2	2	2	2	TFIIB	zinc-binding
DZR	PF12773.2	gi|379003304|ref|YP_005258976.1|	-	4.9e-05	23.0	6.2	0.038	13.8	0.1	2.5	2	1	0	2	2	2	2	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|379003304|ref|YP_005258976.1|	-	0.00017	21.2	5.5	0.058	13.0	1.2	2.5	1	1	0	2	2	2	2	Putative	transposase	DNA-binding	domain
DUF2387	PF09526.5	gi|379003304|ref|YP_005258976.1|	-	0.00019	21.3	5.0	0.17	11.8	0.4	2.5	1	1	0	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|379003304|ref|YP_005258976.1|	-	0.00024	20.6	7.3	0.021	14.3	0.2	3.3	3	0	0	3	3	3	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003304|ref|YP_005258976.1|	-	0.00025	20.6	7.5	0.026	14.1	0.3	3.4	3	0	0	3	3	3	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379003304|ref|YP_005258976.1|	-	0.00051	19.9	8.6	0.71	9.8	0.5	3.3	3	0	0	3	3	3	2	Zinc	ribbon	domain
DUF2082	PF09855.4	gi|379003304|ref|YP_005258976.1|	-	0.00069	19.4	3.6	2.3	8.1	0.0	3.2	3	0	0	3	3	3	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
UPF0547	PF10571.4	gi|379003304|ref|YP_005258976.1|	-	0.00086	18.9	11.0	1.1	9.0	0.1	3.8	4	0	0	4	4	4	2	Uncharacterised	protein	family	UPF0547
zinc_ribbon_2	PF13240.1	gi|379003304|ref|YP_005258976.1|	-	0.00094	18.5	14.4	0.57	9.7	0.1	4.1	4	0	0	4	4	4	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003304|ref|YP_005258976.1|	-	0.0018	17.4	12.4	0.42	9.8	0.0	4.2	4	0	0	4	4	4	1	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|379003304|ref|YP_005258976.1|	-	0.003	16.7	8.2	0.23	10.6	0.1	3.1	2	1	1	3	3	3	1	Transcription	factor	zinc-finger
A2L_zn_ribbon	PF08792.5	gi|379003304|ref|YP_005258976.1|	-	0.0054	16.1	6.1	0.74	9.3	0.0	3.5	3	0	0	3	3	3	1	A2L	zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|379003304|ref|YP_005258976.1|	-	0.0068	16.6	7.5	0.023	14.9	1.6	2.3	1	1	1	2	2	2	2	Restriction	alleviation	protein	Lar
zf-ISL3	PF14690.1	gi|379003304|ref|YP_005258976.1|	-	0.0072	16.3	9.0	1.5	8.9	0.1	3.7	3	1	1	4	4	4	2	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Elf1	PF05129.8	gi|379003304|ref|YP_005258976.1|	-	0.01	15.5	4.1	1.2	8.8	0.0	2.8	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS91	PF14319.1	gi|379003304|ref|YP_005258976.1|	-	0.012	15.1	7.0	0.12	11.8	0.3	3.1	1	1	2	3	3	3	0	Transposase	zinc-binding	domain
Terminase_GpA	PF05876.7	gi|379003304|ref|YP_005258976.1|	-	0.026	12.9	4.5	0.12	10.7	2.0	2.0	2	0	0	2	2	2	0	Phage	terminase	large	subunit	(GpA)
zf-NADH-PPase	PF09297.6	gi|379003304|ref|YP_005258976.1|	-	0.026	14.0	9.3	3.5	7.2	0.0	4.1	4	0	0	4	4	4	0	NADH	pyrophosphatase	zinc	ribbon	domain
Baculo_LEF5_C	PF11792.3	gi|379003304|ref|YP_005258976.1|	-	0.054	12.8	0.4	0.054	12.8	0.3	2.4	2	1	0	2	2	2	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
zf-IS66	PF13005.2	gi|379003304|ref|YP_005258976.1|	-	0.089	12.7	6.2	2.2	8.3	0.1	3.4	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
Opy2	PF09463.5	gi|379003304|ref|YP_005258976.1|	-	0.13	12.4	3.3	10	6.3	0.0	3.2	3	0	0	3	3	3	0	Opy2	protein
DUF2296	PF10058.4	gi|379003304|ref|YP_005258976.1|	-	0.14	11.8	7.5	6.6	6.5	0.1	3.1	2	1	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
HypA	PF01155.14	gi|379003304|ref|YP_005258976.1|	-	0.15	11.7	5.2	0.33	10.6	0.7	2.5	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
DUF4379	PF14311.1	gi|379003304|ref|YP_005258976.1|	-	0.4	10.5	10.2	1.9	8.3	1.2	3.3	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4379)
zf-tcix	PF14952.1	gi|379003304|ref|YP_005258976.1|	-	0.44	9.9	9.7	8.6	5.7	0.1	3.4	3	0	0	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-Mss51	PF13824.1	gi|379003304|ref|YP_005258976.1|	-	0.45	10.4	4.3	6.8	6.6	0.8	2.5	2	1	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
YhfH	PF14149.1	gi|379003304|ref|YP_005258976.1|	-	0.51	10.1	4.3	29	4.5	0.0	3.3	3	0	0	3	3	3	0	YhfH-like	protein
ADK_lid	PF05191.9	gi|379003304|ref|YP_005258976.1|	-	0.59	9.8	5.0	38	4.0	0.1	3.5	3	0	0	3	3	3	0	Adenylate	kinase,	active	site	lid
DUF329	PF03884.9	gi|379003304|ref|YP_005258976.1|	-	0.62	9.6	3.2	18	5.0	0.1	3.0	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF329)
Rubredoxin	PF00301.15	gi|379003304|ref|YP_005258976.1|	-	0.66	9.9	8.5	14	5.6	0.1	3.4	3	0	0	3	3	3	0	Rubredoxin
DNA_RNApol_7kD	PF03604.8	gi|379003304|ref|YP_005258976.1|	-	0.67	9.4	8.9	6.3	6.3	0.5	3.3	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
IBR	PF01485.16	gi|379003304|ref|YP_005258976.1|	-	0.85	9.5	8.3	2.5	8.0	0.1	2.9	2	1	0	2	2	2	0	IBR	domain
FYDLN_acid	PF09538.5	gi|379003304|ref|YP_005258976.1|	-	0.88	10.1	6.5	0.47	11.0	0.3	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(FYDLN_acid)
TerY-C	PF15616.1	gi|379003304|ref|YP_005258976.1|	-	1.1	9.2	6.1	3.6	7.5	1.1	2.4	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
zf-C2H2_4	PF13894.1	gi|379003304|ref|YP_005258976.1|	-	1.1	9.7	5.0	76	3.9	0.3	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
C1_4	PF07975.7	gi|379003304|ref|YP_005258976.1|	-	1.4	8.9	5.9	9.8	6.2	1.6	3.0	1	1	1	2	2	2	0	TFIIH	C1-like	domain
zf-ZPR1	PF03367.8	gi|379003304|ref|YP_005258976.1|	-	1.6	7.8	5.4	2.4	7.3	0.1	2.7	2	1	0	2	2	2	0	ZPR1	zinc-finger	domain
FdhE	PF04216.7	gi|379003304|ref|YP_005258976.1|	-	1.7	8.3	5.9	0.43	10.2	1.1	1.8	1	1	0	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
zf-C4_Topoisom	PF01396.14	gi|379003304|ref|YP_005258976.1|	-	1.8	8.1	7.7	9.9	5.7	0.3	3.2	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Ogr_Delta	PF04606.7	gi|379003304|ref|YP_005258976.1|	-	2.2	8.0	12.8	8.4	6.1	3.6	3.4	2	2	0	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF2072	PF09845.4	gi|379003304|ref|YP_005258976.1|	-	2.3	8.1	9.2	1.7	8.5	0.1	3.1	2	1	1	3	3	3	0	Zn-ribbon	containing	protein	(DUF2072)
Nudix_N_2	PF14803.1	gi|379003304|ref|YP_005258976.1|	-	2.4	7.8	11.5	11	5.8	0.0	3.6	3	1	0	3	3	2	0	Nudix	N-terminal
Fer4_10	PF13237.1	gi|379003304|ref|YP_005258976.1|	-	3.4	7.5	7.6	4.2e+02	0.8	5.3	2.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
DUF35_N	PF12172.3	gi|379003304|ref|YP_005258976.1|	-	3.4	7.6	9.7	15	5.6	0.2	3.5	4	0	0	4	4	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rpr2	PF04032.11	gi|379003304|ref|YP_005258976.1|	-	7.7	6.4	7.4	2.5e+02	1.6	5.1	2.8	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
PCNA_N	PF00705.13	gi|379003305|ref|YP_005258977.1|	-	6.1e-13	48.3	0.1	1.1e-11	44.3	0.0	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|379003305|ref|YP_005258977.1|	-	1.3e-12	47.7	0.9	3.9e-12	46.2	0.1	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad1	PF02144.11	gi|379003305|ref|YP_005258977.1|	-	1.3e-06	27.4	1.5	0.00021	20.1	0.3	2.4	1	1	1	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
Rad9	PF04139.8	gi|379003305|ref|YP_005258977.1|	-	0.00028	20.1	0.0	0.00049	19.3	0.0	1.5	1	1	0	1	1	1	1	Rad9
DUF3236	PF11576.3	gi|379003305|ref|YP_005258977.1|	-	0.0048	16.3	0.1	0.0079	15.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3236)
CusF_Ec	PF11604.3	gi|379003305|ref|YP_005258977.1|	-	0.1	12.4	0.2	0.68	9.8	0.0	2.3	1	1	1	2	2	2	0	Copper	binding	periplasmic	protein	CusF
DNA_primase_S	PF01896.14	gi|379003306|ref|YP_005258978.1|	-	3e-21	75.7	0.0	4.8e-21	75.0	0.0	1.3	1	0	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
MutS_IV	PF05190.13	gi|379003306|ref|YP_005258978.1|	-	0.088	12.9	0.0	0.19	11.9	0.0	1.5	1	0	0	1	1	1	0	MutS	family	domain	IV
Ribosomal_L44	PF00935.14	gi|379003308|ref|YP_005258980.1|	-	2.1e-26	91.7	9.7	2.5e-26	91.4	6.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L44
Elf1	PF05129.8	gi|379003308|ref|YP_005258980.1|	-	0.003	17.2	3.0	0.031	13.9	0.6	2.2	2	0	0	2	2	2	1	Transcription	elongation	factor	Elf1	like
Zn_Tnp_IS1595	PF12760.2	gi|379003308|ref|YP_005258980.1|	-	0.0071	16.1	0.9	1.6	8.5	0.0	2.2	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003308|ref|YP_005258980.1|	-	0.013	15.0	3.2	0.96	9.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2225	PF09986.4	gi|379003308|ref|YP_005258980.1|	-	0.014	14.8	2.1	0.019	14.4	1.5	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
zf-ribbon_3	PF13248.1	gi|379003308|ref|YP_005258980.1|	-	0.014	14.5	2.0	2.4	7.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-DNL	PF05180.7	gi|379003308|ref|YP_005258980.1|	-	0.015	14.9	4.7	0.22	11.2	0.3	2.2	2	0	0	2	2	2	0	DNL	zinc	finger
zf-Mss51	PF13824.1	gi|379003308|ref|YP_005258980.1|	-	0.026	14.4	0.3	3.9	7.4	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ISL3	PF14690.1	gi|379003308|ref|YP_005258980.1|	-	0.054	13.5	2.6	7.2	6.7	0.1	2.5	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNA_POL_M_15KD	PF02150.11	gi|379003308|ref|YP_005258980.1|	-	0.061	13.0	1.8	0.68	9.6	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1	PF03811.8	gi|379003308|ref|YP_005258980.1|	-	0.073	12.5	1.8	0.17	11.4	0.1	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Ribosomal_L33	PF00471.15	gi|379003308|ref|YP_005258980.1|	-	0.081	13.1	0.5	0.081	13.1	0.3	2.5	2	1	0	2	2	2	0	Ribosomal	protein	L33
Lar_restr_allev	PF14354.1	gi|379003308|ref|YP_005258980.1|	-	0.083	13.2	1.6	3	8.2	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
DZR	PF12773.2	gi|379003308|ref|YP_005258980.1|	-	0.087	12.6	3.4	0.34	10.7	2.3	1.9	1	1	0	1	1	1	0	Double	zinc	ribbon
IBR	PF01485.16	gi|379003308|ref|YP_005258980.1|	-	0.1	12.4	3.4	0.17	11.7	2.3	1.4	1	1	0	1	1	1	0	IBR	domain
Zn-ribbon_8	PF09723.5	gi|379003308|ref|YP_005258980.1|	-	0.12	12.3	0.9	14	5.7	0.0	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
Ski_Sno	PF02437.12	gi|379003308|ref|YP_005258980.1|	-	0.17	11.4	0.8	0.21	11.1	0.1	1.5	2	0	0	2	2	1	0	SKI/SNO/DAC	family
zf-C2H2_4	PF13894.1	gi|379003308|ref|YP_005258980.1|	-	0.18	12.1	1.5	7	7.2	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF1660	PF07874.6	gi|379003308|ref|YP_005258980.1|	-	0.23	11.7	2.4	1	9.6	0.1	2.1	2	0	0	2	2	2	0	Prophage	protein	(DUF1660)
NOB1_Zn_bind	PF08772.6	gi|379003308|ref|YP_005258980.1|	-	0.26	11.1	5.9	2.7	7.8	0.5	2.2	2	0	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OS-D	PF03392.8	gi|379003308|ref|YP_005258980.1|	-	0.3	11.0	3.9	9.1	6.3	0.1	2.2	1	1	1	2	2	2	0	Insect	pheromone-binding	family,	A10/OS-D
zf-Dof	PF02701.10	gi|379003308|ref|YP_005258980.1|	-	0.32	10.9	3.0	0.16	11.9	0.5	1.7	2	0	0	2	2	2	0	Dof	domain,	zinc	finger
OrfB_Zn_ribbon	PF07282.6	gi|379003308|ref|YP_005258980.1|	-	0.47	10.1	3.9	1.6	8.4	0.1	2.3	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Tnp_zf-ribbon_2	PF13842.1	gi|379003308|ref|YP_005258980.1|	-	0.56	10.6	5.7	10	6.5	0.5	2.4	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DUF2296	PF10058.4	gi|379003308|ref|YP_005258980.1|	-	0.61	9.8	2.9	15	5.4	0.1	2.3	2	0	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zinc_ribbon_4	PF13717.1	gi|379003308|ref|YP_005258980.1|	-	0.63	9.7	3.3	11	5.8	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2387	PF09526.5	gi|379003308|ref|YP_005258980.1|	-	0.71	9.8	3.2	6.2	6.8	0.2	2.3	1	1	1	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|379003308|ref|YP_005258980.1|	-	0.74	9.4	3.3	12	5.5	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|379003308|ref|YP_005258980.1|	-	0.79	9.3	6.4	1.3	8.6	0.4	2.4	2	1	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Cys_rich_KTR	PF14205.1	gi|379003308|ref|YP_005258980.1|	-	1.3	8.5	4.7	3.3	7.2	0.1	2.5	2	1	0	2	2	2	0	Cysteine-rich	KTR
Ribosomal_L37e	PF01907.14	gi|379003308|ref|YP_005258980.1|	-	9.9	6.0	8.2	1.6	8.5	0.2	2.7	1	1	1	2	2	2	0	Ribosomal	protein	L37e
Ribosomal_S27e	PF01667.12	gi|379003309|ref|YP_005258981.1|	-	1.9e-24	84.9	1.1	2.2e-24	84.7	0.7	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
TF_Zn_Ribbon	PF08271.7	gi|379003309|ref|YP_005258981.1|	-	0.0006	19.0	0.3	0.0008	18.6	0.2	1.2	1	0	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_6	PF14599.1	gi|379003309|ref|YP_005258981.1|	-	0.0015	18.2	0.2	0.0022	17.7	0.1	1.2	1	0	0	1	1	1	1	Zinc-ribbon
zf-ribbon_3	PF13248.1	gi|379003309|ref|YP_005258981.1|	-	0.0023	17.0	0.7	0.39	9.9	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF3797	PF12677.2	gi|379003309|ref|YP_005258981.1|	-	0.0086	15.6	0.5	0.016	14.7	0.1	1.6	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF3797)
zinc_ribbon_4	PF13717.1	gi|379003309|ref|YP_005258981.1|	-	0.012	15.2	1.2	0.62	9.8	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|379003309|ref|YP_005258981.1|	-	0.019	14.0	0.8	4.1	6.5	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_2	PF13240.1	gi|379003309|ref|YP_005258981.1|	-	0.032	13.7	1.1	0.25	10.8	0.6	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.14	gi|379003309|ref|YP_005258981.1|	-	0.067	12.8	0.2	0.091	12.4	0.1	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|379003309|ref|YP_005258981.1|	-	0.069	13.1	1.3	0.29	11.1	0.9	1.8	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF35_N	PF12172.3	gi|379003309|ref|YP_005258981.1|	-	0.071	13.0	1.3	6.2	6.8	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C2H2	PF00096.21	gi|379003309|ref|YP_005258981.1|	-	0.071	13.4	0.5	3	8.3	0.1	2.3	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
zinc_ribbon_5	PF13719.1	gi|379003309|ref|YP_005258981.1|	-	0.08	12.5	3.6	0.68	9.5	0.1	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003309|ref|YP_005258981.1|	-	0.081	12.7	0.6	0.12	12.1	0.4	1.3	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|379003309|ref|YP_005258981.1|	-	0.082	12.5	2.0	0.99	9.0	1.4	2.1	1	1	0	1	1	1	0	Transcription	factor	S-II	(TFIIS)
Hormone_6	PF00236.13	gi|379003309|ref|YP_005258981.1|	-	0.087	12.6	0.1	0.098	12.4	0.1	1.1	1	0	0	1	1	1	0	Glycoprotein	hormone
Lar_restr_allev	PF14354.1	gi|379003309|ref|YP_005258981.1|	-	0.091	13.0	1.0	0.14	12.5	0.7	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Rubredoxin	PF00301.15	gi|379003309|ref|YP_005258981.1|	-	0.092	12.6	0.6	2.9	7.8	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin
IBR	PF01485.16	gi|379003309|ref|YP_005258981.1|	-	0.11	12.3	0.1	0.12	12.2	0.1	1.1	1	0	0	1	1	1	0	IBR	domain
DZR	PF12773.2	gi|379003309|ref|YP_005258981.1|	-	0.12	12.1	0.5	0.2	11.4	0.3	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|379003309|ref|YP_005258981.1|	-	0.14	11.7	1.1	0.66	9.5	0.1	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2HC5	PF06221.8	gi|379003309|ref|YP_005258981.1|	-	0.15	11.8	1.5	2.1	8.1	0.1	2.1	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
Sgf11	PF08209.6	gi|379003309|ref|YP_005258981.1|	-	0.17	11.2	2.8	2.3	7.5	0.1	2.4	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-LITAF-like	PF10601.4	gi|379003309|ref|YP_005258981.1|	-	0.2	11.5	1.5	0.61	9.9	1.0	1.7	1	1	0	1	1	1	0	LITAF-like	zinc	ribbon	domain
CcmH	PF03918.9	gi|379003309|ref|YP_005258981.1|	-	0.22	10.5	1.3	0.29	10.0	0.0	1.7	1	1	1	2	2	2	0	Cytochrome	C	biogenesis	protein
DNA_ligase_ZBD	PF03119.11	gi|379003309|ref|YP_005258981.1|	-	0.25	11.0	2.2	13	5.6	0.3	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
Desulfoferrod_N	PF06397.7	gi|379003309|ref|YP_005258981.1|	-	0.29	10.5	5.9	3.5	7.0	0.3	3.0	1	1	2	3	3	3	0	Desulfoferrodoxin,	N-terminal	domain
RNA_pol_N	PF01194.12	gi|379003309|ref|YP_005258981.1|	-	0.31	11.0	1.7	1.3	9.0	0.1	2.1	2	0	0	2	2	2	0	RNA	polymerases	N	/	8	kDa	subunit
DNA_RNApol_7kD	PF03604.8	gi|379003309|ref|YP_005258981.1|	-	1.1	8.7	5.2	4.5	6.8	0.4	2.2	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
EIF_2_alpha	PF07541.7	gi|379003310|ref|YP_005258982.1|	-	4.7e-27	93.9	0.2	1.2e-26	92.6	0.0	1.7	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|379003310|ref|YP_005258982.1|	-	9.4e-06	25.6	0.1	2.9e-05	24.0	0.1	1.9	1	1	0	1	1	1	1	S1	RNA	binding	domain
Nop10p	PF04135.7	gi|379003311|ref|YP_005258983.1|	-	1.9e-26	91.5	1.0	2.3e-26	91.2	0.7	1.1	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
DZR	PF12773.2	gi|379003311|ref|YP_005258983.1|	-	0.0084	15.9	0.9	0.012	15.3	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-CCHC_4	PF14392.1	gi|379003311|ref|YP_005258983.1|	-	0.01	15.5	0.1	0.019	14.6	0.1	1.5	1	0	0	1	1	1	1	Zinc	knuckle
zf-ribbon_3	PF13248.1	gi|379003311|ref|YP_005258983.1|	-	0.03	13.5	5.1	0.086	12.0	3.6	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|379003311|ref|YP_005258983.1|	-	0.038	13.8	3.4	0.058	13.2	2.3	1.7	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-NADH-PPase	PF09297.6	gi|379003311|ref|YP_005258983.1|	-	0.14	11.7	5.3	1.6	8.3	0.7	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF1272	PF06906.6	gi|379003311|ref|YP_005258983.1|	-	0.14	11.9	2.1	0.2	11.5	1.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Nudix_N_2	PF14803.1	gi|379003311|ref|YP_005258983.1|	-	0.15	11.8	5.1	0.39	10.4	0.8	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-HIT	PF04438.11	gi|379003311|ref|YP_005258983.1|	-	0.25	11.0	3.0	0.43	10.2	2.1	1.4	1	0	0	1	1	1	0	HIT	zinc	finger
Ribosomal_L37e	PF01907.14	gi|379003311|ref|YP_005258983.1|	-	0.25	11.1	1.6	0.45	10.3	1.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zinc_ribbon_2	PF13240.1	gi|379003311|ref|YP_005258983.1|	-	0.34	10.4	4.0	1.7	8.2	0.7	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Desulfoferrod_N	PF06397.7	gi|379003311|ref|YP_005258983.1|	-	0.5	9.7	2.2	4.2	6.8	0.0	2.3	1	1	1	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zf-tcix	PF14952.1	gi|379003311|ref|YP_005258983.1|	-	0.7	9.2	5.8	6.4	6.2	0.0	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-C4_Topoisom	PF01396.14	gi|379003311|ref|YP_005258983.1|	-	0.71	9.4	4.1	0.45	10.0	1.0	1.9	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
Zn-ribbon_8	PF09723.5	gi|379003311|ref|YP_005258983.1|	-	1.3	8.9	6.4	29	4.6	4.5	2.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|379003311|ref|YP_005258983.1|	-	2	8.1	5.8	1.1	8.9	0.7	2.3	1	1	1	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
DUF35_N	PF12172.3	gi|379003311|ref|YP_005258983.1|	-	2.2	8.3	7.9	8.2	6.4	5.5	1.9	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF329	PF03884.9	gi|379003311|ref|YP_005258983.1|	-	4	7.0	6.1	1.4	8.5	1.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
STT3	PF02516.9	gi|379003312|ref|YP_005258984.1|	-	8.3e-17	61.3	38.0	1.3e-16	60.6	26.3	1.2	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
DUF35_N	PF12172.3	gi|379003313|ref|YP_005258985.1|	-	0.0034	17.2	0.9	0.23	11.4	0.1	2.1	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
ADK_lid	PF05191.9	gi|379003313|ref|YP_005258985.1|	-	0.006	16.2	1.0	0.45	10.2	0.0	2.2	2	0	0	2	2	2	1	Adenylate	kinase,	active	site	lid
Auto_anti-p27	PF06677.7	gi|379003313|ref|YP_005258985.1|	-	0.013	15.2	0.9	1.6	8.5	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Nudix_N_2	PF14803.1	gi|379003313|ref|YP_005258985.1|	-	0.023	14.3	1.0	2	8.1	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-C4_Topoisom	PF01396.14	gi|379003313|ref|YP_005258985.1|	-	0.059	12.8	2.0	2	8.0	0.3	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF2688	PF10892.3	gi|379003313|ref|YP_005258985.1|	-	0.09	12.4	0.4	0.12	12.0	0.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2688)
DNA_ligase_ZBD	PF03119.11	gi|379003313|ref|YP_005258985.1|	-	0.1	12.3	1.3	0.19	11.4	0.2	1.9	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF1272	PF06906.6	gi|379003313|ref|YP_005258985.1|	-	0.14	12.0	2.2	0.38	10.6	1.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-ribbon_3	PF13248.1	gi|379003313|ref|YP_005258985.1|	-	0.16	11.2	2.8	0.89	8.8	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|379003313|ref|YP_005258985.1|	-	0.2	11.1	2.8	0.31	10.5	0.5	2.1	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.5	gi|379003313|ref|YP_005258985.1|	-	0.23	11.4	2.6	4.8	7.2	0.3	2.1	2	0	0	2	2	2	0	Zinc	ribbon	domain
DUF1610	PF07754.6	gi|379003313|ref|YP_005258985.1|	-	8.5	6.5	7.0	13	5.9	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
DUF433	PF04255.9	gi|379003314|ref|YP_005258986.1|	-	0.11	11.9	0.0	0.28	10.6	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF433)
DHHA1	PF02272.14	gi|379003315|ref|YP_005258987.1|	-	0.00013	21.6	1.0	0.0003	20.4	0.7	1.6	1	0	0	1	1	1	1	DHHA1	domain
SIS	PF01380.17	gi|379003316|ref|YP_005258988.1|	-	1.2e-47	160.7	0.6	3.6e-27	94.5	0.4	2.4	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|379003316|ref|YP_005258988.1|	-	1.6e-25	89.5	0.1	3.3e-25	88.5	0.1	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|379003316|ref|YP_005258988.1|	-	8.4e-22	77.3	0.2	5.8e-16	58.1	0.0	2.6	2	1	0	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|379003316|ref|YP_005258988.1|	-	2.4e-20	72.4	0.0	4.8e-20	71.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
SIS_2	PF13580.1	gi|379003316|ref|YP_005258988.1|	-	1.5e-07	31.1	1.0	3.4e-06	26.8	0.1	3.0	2	1	0	3	3	3	1	SIS	domain
GATase_4	PF13230.1	gi|379003316|ref|YP_005258988.1|	-	0.024	13.3	0.0	0.039	12.6	0.0	1.2	1	0	0	1	1	1	0	Glutamine	amidotransferases	class-II
Pyr_excise	PF03013.9	gi|379003316|ref|YP_005258988.1|	-	0.16	11.6	0.0	0.81	9.4	0.0	2.0	2	0	0	2	2	2	0	Pyrimidine	dimer	DNA	glycosylase
Hexapep	PF00132.19	gi|379003317|ref|YP_005258989.1|	-	7.3e-15	53.7	11.8	6.4e-09	34.9	0.7	4.0	1	1	4	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|379003317|ref|YP_005258989.1|	-	7.9e-14	52.0	0.1	1.4e-13	51.1	0.1	1.5	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.18	gi|379003317|ref|YP_005258989.1|	-	2.6e-07	30.2	1.8	3e-05	23.4	0.6	2.5	2	1	0	2	2	2	1	Nucleotidyl	transferase
Hexapep_2	PF14602.1	gi|379003317|ref|YP_005258989.1|	-	0.00013	21.4	1.8	0.034	13.7	0.0	4.1	4	0	0	4	4	4	1	Hexapeptide	repeat	of	succinyl-transferase
TrmB	PF01978.14	gi|379003318|ref|YP_005258990.1|	-	7.1e-09	35.2	0.0	1.1e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379003318|ref|YP_005258990.1|	-	9.4e-09	34.8	0.2	1.7e-08	33.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|379003318|ref|YP_005258990.1|	-	7.4e-08	32.0	0.2	1.6e-07	31.0	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|379003318|ref|YP_005258990.1|	-	8.2e-08	31.5	0.0	2e-07	30.2	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|379003318|ref|YP_005258990.1|	-	2.1e-06	27.3	0.0	4.8e-06	26.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|379003318|ref|YP_005258990.1|	-	1e-05	24.9	0.2	1e-05	24.9	0.1	2.0	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|379003318|ref|YP_005258990.1|	-	6.5e-05	22.3	0.1	0.00011	21.6	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
DUF2250	PF10007.4	gi|379003318|ref|YP_005258990.1|	-	0.00014	21.7	0.0	0.00024	20.9	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_11	PF08279.7	gi|379003318|ref|YP_005258990.1|	-	0.00018	21.0	0.1	0.0004	19.9	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|379003318|ref|YP_005258990.1|	-	0.00027	20.4	0.2	0.00051	19.5	0.2	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
TFIIE_alpha	PF02002.12	gi|379003318|ref|YP_005258990.1|	-	0.00044	19.7	0.0	0.0007	19.0	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
GntR	PF00392.16	gi|379003318|ref|YP_005258990.1|	-	0.00045	19.6	0.2	0.00087	18.6	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|379003318|ref|YP_005258990.1|	-	0.0007	19.8	0.1	0.0013	18.9	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|379003318|ref|YP_005258990.1|	-	0.00092	18.9	0.1	0.0024	17.6	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|379003318|ref|YP_005258990.1|	-	0.0015	18.4	0.0	0.0032	17.3	0.0	1.5	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
RPA_C	PF08784.6	gi|379003318|ref|YP_005258990.1|	-	0.0022	18.4	0.0	0.0044	17.4	0.0	1.6	1	1	0	1	1	1	1	Replication	protein	A	C	terminal
Penicillinase_R	PF03965.11	gi|379003318|ref|YP_005258990.1|	-	0.0029	17.6	0.0	0.0052	16.8	0.0	1.4	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_28	PF13518.1	gi|379003318|ref|YP_005258990.1|	-	0.004	17.1	0.3	0.0072	16.2	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|379003318|ref|YP_005258990.1|	-	0.0075	16.3	0.1	0.016	15.3	0.1	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_38	PF13936.1	gi|379003318|ref|YP_005258990.1|	-	0.0081	15.6	0.2	0.013	15.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379003318|ref|YP_005258990.1|	-	0.018	15.2	0.1	0.031	14.4	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
EAP30	PF04157.11	gi|379003318|ref|YP_005258990.1|	-	0.021	13.9	0.0	0.036	13.2	0.0	1.3	1	0	0	1	1	1	0	EAP30/Vps36	family
Tox-WTIP	PF15654.1	gi|379003318|ref|YP_005258990.1|	-	0.046	13.3	1.1	0.1	12.2	0.0	2.2	2	0	0	2	2	2	0	Toxin	with	a	conserved	tryptophan	and	TIP	tripeptide	motif
HTH_36	PF13730.1	gi|379003318|ref|YP_005258990.1|	-	0.064	13.3	0.0	0.12	12.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.7	gi|379003318|ref|YP_005258990.1|	-	0.17	11.0	0.0	0.27	10.3	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Hid1	PF12722.2	gi|379003319|ref|YP_005258991.1|	-	0.36	8.4	13.0	0.46	8.1	9.0	1.1	1	0	0	1	1	1	0	High-temperature-induced	dauer-formation	protein
CENP-B_dimeris	PF09026.5	gi|379003319|ref|YP_005258991.1|	-	0.84	9.9	0.0	0.84	9.9	0.0	3.6	1	1	2	3	3	3	0	Centromere	protein	B	dimerisation	domain
Desulfoferrod_N	PF06397.7	gi|379003320|ref|YP_005258992.1|	-	0.017	14.4	2.8	0.052	12.9	2.0	1.9	1	1	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
DUF4428	PF14471.1	gi|379003320|ref|YP_005258992.1|	-	0.035	13.8	0.2	0.068	12.9	0.1	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
TF_Zn_Ribbon	PF08271.7	gi|379003320|ref|YP_005258992.1|	-	0.07	12.4	0.3	8.6	5.7	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-SNAP50_C	PF12251.3	gi|379003320|ref|YP_005258992.1|	-	0.1	11.9	0.0	0.11	11.9	0.0	1.0	1	0	0	1	1	1	0	snRNA-activating	protein	of	50kDa	MW	C	terminal
zf-C3HC4_3	PF13920.1	gi|379003320|ref|YP_005258992.1|	-	0.13	11.9	1.9	0.49	10.0	1.3	1.8	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Sgf11	PF08209.6	gi|379003320|ref|YP_005258992.1|	-	0.15	11.4	0.7	4.7	6.6	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-C3HC4_2	PF13923.1	gi|379003320|ref|YP_005258992.1|	-	0.25	11.3	2.1	0.76	9.8	1.4	1.9	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|379003320|ref|YP_005258992.1|	-	0.26	11.2	1.5	1.8	8.5	1.1	2.0	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C4_ClpX	PF06689.8	gi|379003320|ref|YP_005258992.1|	-	0.39	10.2	2.4	0.87	9.1	0.3	2.2	1	1	1	2	2	2	0	ClpX	C4-type	zinc	finger
zf-RING_2	PF13639.1	gi|379003320|ref|YP_005258992.1|	-	0.85	9.4	3.4	9.1	6.1	2.3	2.0	1	1	0	1	1	1	0	Ring	finger	domain
G_glu_transpept	PF01019.16	gi|379003321|ref|YP_005258993.1|	-	1.7e-70	237.9	0.0	1.1e-69	235.3	0.0	2.0	1	1	0	1	1	1	1	Gamma-glutamyltranspeptidase
CP_ATPgrasp_1	PF04174.8	gi|379003321|ref|YP_005258993.1|	-	0.14	10.7	0.1	0.23	10.0	0.1	1.2	1	0	0	1	1	1	0	A	circularly	permuted	ATPgrasp
GATase	PF00117.23	gi|379003322|ref|YP_005258994.1|	-	3.3e-35	121.2	0.0	5.2e-35	120.6	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GMP_synt_C	PF00958.17	gi|379003322|ref|YP_005258994.1|	-	1e-31	108.4	0.4	2.9e-31	107.0	0.0	2.0	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|379003322|ref|YP_005258994.1|	-	3.7e-13	48.9	0.0	9.1e-09	34.5	0.0	2.3	2	0	0	2	2	2	2	NAD	synthase
Peptidase_C26	PF07722.8	gi|379003322|ref|YP_005258994.1|	-	6.6e-09	35.5	0.4	4.6e-08	32.7	0.2	2.3	2	1	0	2	2	2	1	Peptidase	C26
tRNA_Me_trans	PF03054.11	gi|379003322|ref|YP_005258994.1|	-	1.7e-05	23.5	0.0	0.00097	17.7	0.0	2.2	2	0	0	2	2	2	1	tRNA	methyl	transferase
ThiI	PF02568.9	gi|379003322|ref|YP_005258994.1|	-	0.00024	20.5	0.1	0.0051	16.2	0.0	2.9	1	1	1	2	2	2	1	Thiamine	biosynthesis	protein	(ThiI)
ATP_bind_3	PF01171.15	gi|379003322|ref|YP_005258994.1|	-	0.00029	20.3	0.0	0.00065	19.2	0.0	1.6	1	1	0	1	1	1	1	PP-loop	family
QueC	PF06508.8	gi|379003322|ref|YP_005258994.1|	-	0.00035	19.9	0.0	0.0026	17.1	0.0	2.1	1	1	1	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.16	gi|379003322|ref|YP_005258994.1|	-	0.0079	15.7	0.1	0.023	14.2	0.0	1.7	2	0	0	2	2	2	1	Asparagine	synthase
THUMP	PF02926.12	gi|379003323|ref|YP_005258995.1|	-	7.2e-09	35.6	0.3	1.4e-08	34.7	0.2	1.5	1	0	0	1	1	1	1	THUMP	domain
ParD	PF09386.5	gi|379003323|ref|YP_005258995.1|	-	0.097	12.8	0.1	2.2	8.4	0.0	2.7	3	0	0	3	3	3	0	Antitoxin	ParD
Methyltrn_RNA_2	PF04013.7	gi|379003324|ref|YP_005258996.1|	-	5.2e-07	29.4	0.0	7.6e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
DUF4501	PF14946.1	gi|379003324|ref|YP_005258996.1|	-	0.026	14.0	0.0	0.034	13.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4501)
SRP54	PF00448.17	gi|379003325|ref|YP_005258997.1|	-	1.6e-67	226.7	0.2	2.3e-67	226.2	0.1	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|379003325|ref|YP_005258997.1|	-	3.3e-27	94.7	0.4	2.9e-26	91.7	0.3	2.5	2	0	0	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|379003325|ref|YP_005258997.1|	-	1.6e-10	40.9	2.1	3e-10	40.0	0.0	2.6	3	0	0	3	3	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|379003325|ref|YP_005258997.1|	-	4.2e-09	36.1	1.1	1.2e-08	34.5	0.7	1.8	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_22	PF13401.1	gi|379003325|ref|YP_005258997.1|	-	7.7e-07	29.3	0.1	4.1e-06	26.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|379003325|ref|YP_005258997.1|	-	3.1e-06	26.9	0.1	9.3e-06	25.3	0.1	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|379003325|ref|YP_005258997.1|	-	1e-05	26.3	0.0	3.2e-05	24.7	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.15	gi|379003325|ref|YP_005258997.1|	-	3.4e-05	23.5	0.0	8.1e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	Adenylylsulphate	kinase
cobW	PF02492.14	gi|379003325|ref|YP_005258997.1|	-	4.7e-05	22.9	1.5	0.00028	20.3	1.0	2.0	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_19	PF13245.1	gi|379003325|ref|YP_005258997.1|	-	0.00013	21.5	0.2	0.0065	16.2	0.0	3.0	3	0	0	3	3	2	1	Part	of	AAA	domain
AAA_31	PF13614.1	gi|379003325|ref|YP_005258997.1|	-	0.00057	19.8	0.1	0.038	13.9	0.0	2.7	2	1	1	3	3	2	1	AAA	domain
KTI12	PF08433.5	gi|379003325|ref|YP_005258997.1|	-	0.00059	19.1	0.0	0.0013	18.0	0.0	1.5	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
Zeta_toxin	PF06414.7	gi|379003325|ref|YP_005258997.1|	-	0.00088	18.4	0.0	0.0016	17.5	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|379003325|ref|YP_005258997.1|	-	0.00093	19.2	0.0	0.0023	17.9	0.0	1.7	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_33	PF13671.1	gi|379003325|ref|YP_005258997.1|	-	0.0011	18.7	0.0	0.0022	17.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
6PF2K	PF01591.13	gi|379003325|ref|YP_005258997.1|	-	0.0017	17.4	0.0	0.0037	16.3	0.0	1.5	1	0	0	1	1	1	1	6-phosphofructo-2-kinase
AAA_24	PF13479.1	gi|379003325|ref|YP_005258997.1|	-	0.0018	17.9	0.0	0.0034	16.9	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|379003325|ref|YP_005258997.1|	-	0.002	16.9	0.4	0.012	14.3	0.0	2.1	2	0	0	2	2	2	1	ArgK	protein
MipZ	PF09140.6	gi|379003325|ref|YP_005258997.1|	-	0.0031	16.6	0.1	0.071	12.1	0.0	2.2	2	0	0	2	2	2	1	ATPase	MipZ
Thymidylate_kin	PF02223.12	gi|379003325|ref|YP_005258997.1|	-	0.0037	16.6	1.3	0.0079	15.5	0.1	2.2	2	0	0	2	2	1	1	Thymidylate	kinase
AAA_10	PF12846.2	gi|379003325|ref|YP_005258997.1|	-	0.0047	16.4	0.2	0.0081	15.6	0.1	1.8	1	1	0	1	1	1	1	AAA-like	domain
LpxK	PF02606.9	gi|379003325|ref|YP_005258997.1|	-	0.013	14.4	0.2	0.049	12.5	0.0	1.8	2	0	0	2	2	2	0	Tetraacyldisaccharide-1-P	4'-kinase
PduV-EutP	PF10662.4	gi|379003325|ref|YP_005258997.1|	-	0.016	14.6	0.7	1.9	7.9	0.1	2.4	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_28	PF13521.1	gi|379003325|ref|YP_005258997.1|	-	0.02	14.8	0.0	0.044	13.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|379003325|ref|YP_005258997.1|	-	0.022	14.3	1.2	0.072	12.6	0.3	2.2	1	1	0	2	2	2	0	AAA	domain
ArsA_ATPase	PF02374.10	gi|379003325|ref|YP_005258997.1|	-	0.033	13.2	3.2	0.1	11.6	0.1	2.9	3	1	0	4	4	4	0	Anion-transporting	ATPase
NTPase_1	PF03266.10	gi|379003325|ref|YP_005258997.1|	-	0.033	13.8	1.6	0.13	11.9	0.0	2.5	3	0	0	3	3	3	0	NTPase
AAA_18	PF13238.1	gi|379003325|ref|YP_005258997.1|	-	0.035	14.3	0.2	0.1	12.9	0.2	2.0	1	1	0	1	1	1	0	AAA	domain
TPP_enzyme_M	PF00205.17	gi|379003325|ref|YP_005258997.1|	-	0.038	13.7	0.0	0.094	12.4	0.0	1.7	1	1	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
ATP_bind_1	PF03029.12	gi|379003325|ref|YP_005258997.1|	-	0.039	13.4	0.0	0.089	12.3	0.0	1.6	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
KaiC	PF06745.8	gi|379003325|ref|YP_005258997.1|	-	0.039	13.0	0.7	0.08	12.0	0.1	1.9	2	0	0	2	2	2	0	KaiC
DUF1611	PF07755.6	gi|379003325|ref|YP_005258997.1|	-	0.044	12.4	0.0	0.098	11.2	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1611)
AAA_5	PF07728.9	gi|379003325|ref|YP_005258997.1|	-	0.045	13.4	0.1	0.11	12.2	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
SRPRB	PF09439.5	gi|379003325|ref|YP_005258997.1|	-	0.059	12.5	0.6	7.8	5.6	0.1	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
RecX	PF02631.11	gi|379003325|ref|YP_005258997.1|	-	0.065	13.4	0.7	0.82	9.8	0.0	2.8	3	1	0	3	3	2	0	RecX	family
YjeF_N	PF03853.10	gi|379003325|ref|YP_005258997.1|	-	0.074	12.6	0.0	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
G-alpha	PF00503.15	gi|379003325|ref|YP_005258997.1|	-	0.088	11.4	0.0	0.11	11.1	0.0	1.4	1	0	0	1	1	1	0	G-protein	alpha	subunit
Mur_ligase_M	PF08245.7	gi|379003325|ref|YP_005258997.1|	-	0.1	12.6	0.3	1	9.3	0.1	2.1	2	0	0	2	2	2	0	Mur	ligase	middle	domain
RNA_helicase	PF00910.17	gi|379003325|ref|YP_005258997.1|	-	0.13	12.4	0.1	1.2	9.3	0.0	2.2	1	1	0	1	1	1	0	RNA	helicase
AAA	PF00004.24	gi|379003325|ref|YP_005258997.1|	-	0.14	12.3	0.6	0.62	10.2	0.1	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_26	PF13500.1	gi|379003325|ref|YP_005258997.1|	-	0.16	11.5	1.9	1.1	8.7	1.3	2.2	1	1	0	1	1	1	0	AAA	domain
KaiC	PF06745.8	gi|379003326|ref|YP_005258998.1|	-	6.1e-72	241.4	0.1	7e-72	241.2	0.1	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379003326|ref|YP_005258998.1|	-	5.4e-10	39.0	0.0	8.2e-10	38.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|379003326|ref|YP_005258998.1|	-	0.00023	19.6	0.3	0.003	15.9	0.2	2.0	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
DnaB_C	PF03796.10	gi|379003326|ref|YP_005258998.1|	-	0.0041	16.0	0.0	0.006	15.4	0.0	1.3	1	0	0	1	1	1	1	DnaB-like	helicase	C	terminal	domain
AAA_22	PF13401.1	gi|379003326|ref|YP_005258998.1|	-	0.072	13.2	0.0	0.14	12.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Rad51	PF08423.6	gi|379003326|ref|YP_005258998.1|	-	0.087	11.7	0.0	0.16	10.8	0.0	1.3	1	0	0	1	1	1	0	Rad51
Methyltransf_11	PF08241.7	gi|379003327|ref|YP_005258999.1|	-	1.5e-07	31.7	0.0	2.6e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003327|ref|YP_005258999.1|	-	7.4e-06	26.2	0.0	2.2e-05	24.7	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003327|ref|YP_005258999.1|	-	3.5e-05	24.3	0.0	4.6e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379003327|ref|YP_005258999.1|	-	7.3e-05	22.4	0.2	0.00012	21.7	0.1	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379003327|ref|YP_005258999.1|	-	0.0018	17.9	0.0	0.0019	17.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003327|ref|YP_005258999.1|	-	0.0028	18.0	0.0	0.0039	17.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|379003327|ref|YP_005258999.1|	-	0.028	13.5	0.0	0.047	12.7	0.0	1.4	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|379003327|ref|YP_005258999.1|	-	0.03	14.3	0.1	0.05	13.6	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
MTS	PF05175.9	gi|379003327|ref|YP_005258999.1|	-	0.032	13.5	0.1	0.052	12.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
MFS_1	PF07690.11	gi|379003328|ref|YP_005259000.1|	-	2.2e-10	39.8	56.4	5.4e-06	25.3	16.8	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
NPCBM_assoc	PF10633.4	gi|379003329|ref|YP_005259001.1|	-	0.0046	16.9	0.2	0.012	15.6	0.2	1.7	1	0	0	1	1	1	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
A2M_N_2	PF07703.9	gi|379003329|ref|YP_005259001.1|	-	0.051	13.3	0.2	0.42	10.4	0.2	1.9	1	1	1	2	2	2	0	Alpha-2-macroglobulin	family	N-terminal	region
ABC_tran	PF00005.22	gi|379003330|ref|YP_005259002.1|	-	8.2e-29	100.6	0.0	1e-28	100.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003330|ref|YP_005259002.1|	-	3.9e-09	36.9	0.0	9.6e-06	25.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|379003330|ref|YP_005259002.1|	-	6.4e-09	35.2	0.5	1.3e-08	34.2	0.4	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA_23	PF13476.1	gi|379003330|ref|YP_005259002.1|	-	2e-07	31.5	0.1	3.7e-07	30.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379003330|ref|YP_005259002.1|	-	2.9e-07	29.9	0.0	5.5e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|379003330|ref|YP_005259002.1|	-	2.1e-05	24.2	0.3	4.6e-05	23.0	0.2	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
SMC_N	PF02463.14	gi|379003330|ref|YP_005259002.1|	-	2.7e-05	23.5	0.1	0.00028	20.2	0.1	2.0	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_25	PF13481.1	gi|379003330|ref|YP_005259002.1|	-	0.00019	20.9	0.3	0.001	18.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|379003330|ref|YP_005259002.1|	-	0.00026	20.1	0.1	0.00051	19.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|379003330|ref|YP_005259002.1|	-	0.00029	20.4	0.3	0.0029	17.2	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_13	PF13166.1	gi|379003330|ref|YP_005259002.1|	-	0.00056	18.5	0.0	0.00071	18.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003330|ref|YP_005259002.1|	-	0.00072	19.5	0.2	0.0015	18.5	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379003330|ref|YP_005259002.1|	-	0.00091	19.3	0.3	0.0091	16.1	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|379003330|ref|YP_005259002.1|	-	0.0011	18.7	0.1	0.0025	17.5	0.0	1.6	2	0	0	2	2	2	1	Archaeal	ATPase
MobB	PF03205.9	gi|379003330|ref|YP_005259002.1|	-	0.0012	18.5	0.6	0.0062	16.2	0.1	2.1	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|379003330|ref|YP_005259002.1|	-	0.002	17.5	0.3	0.0047	16.4	0.1	1.7	2	1	0	2	2	2	1	AAA-like	domain
AAA_14	PF13173.1	gi|379003330|ref|YP_005259002.1|	-	0.0024	17.7	0.1	0.011	15.6	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
ABC_ATPase	PF09818.4	gi|379003330|ref|YP_005259002.1|	-	0.0046	15.5	1.7	0.0049	15.5	0.1	1.7	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
T2SE	PF00437.15	gi|379003330|ref|YP_005259002.1|	-	0.0057	15.5	0.2	0.011	14.6	0.1	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
cobW	PF02492.14	gi|379003330|ref|YP_005259002.1|	-	0.0081	15.6	0.3	0.03	13.7	0.1	1.9	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.17	gi|379003330|ref|YP_005259002.1|	-	0.012	15.0	0.1	0.023	14.1	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ATP-synt_ab	PF00006.20	gi|379003330|ref|YP_005259002.1|	-	0.018	14.5	0.0	0.021	14.3	0.0	1.2	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA	PF00004.24	gi|379003330|ref|YP_005259002.1|	-	0.025	14.7	0.5	0.12	12.5	0.3	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|379003330|ref|YP_005259002.1|	-	0.038	13.3	0.2	3.7	6.9	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|379003330|ref|YP_005259002.1|	-	0.041	14.7	0.9	0.088	13.6	0.6	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|379003330|ref|YP_005259002.1|	-	0.042	13.7	0.1	0.061	13.1	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|379003330|ref|YP_005259002.1|	-	0.045	12.7	0.0	0.062	12.3	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
NACHT	PF05729.7	gi|379003330|ref|YP_005259002.1|	-	0.051	13.2	0.3	0.12	12.0	0.2	1.6	1	0	0	1	1	1	0	NACHT	domain
PRK	PF00485.13	gi|379003330|ref|YP_005259002.1|	-	0.11	12.0	0.1	13	5.2	0.0	2.7	2	1	1	3	3	3	0	Phosphoribulokinase	/	Uridine	kinase	family
ATP_bind_1	PF03029.12	gi|379003330|ref|YP_005259002.1|	-	0.12	11.9	0.1	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
DLIC	PF05783.6	gi|379003330|ref|YP_005259002.1|	-	0.12	11.0	0.1	0.17	10.5	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
AAA_24	PF13479.1	gi|379003330|ref|YP_005259002.1|	-	0.12	11.8	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379003330|ref|YP_005259002.1|	-	0.14	12.0	0.6	0.26	11.2	0.4	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Peripla_BP_6	PF13458.1	gi|379003331|ref|YP_005259003.1|	-	9.9e-49	166.5	6.7	1.2e-48	166.2	4.6	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|379003331|ref|YP_005259003.1|	-	1.4e-45	155.6	0.0	2e-45	155.0	0.0	1.2	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|379003331|ref|YP_005259003.1|	-	4.8e-12	45.3	0.0	1.7e-11	43.5	0.0	1.7	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
LppC	PF04348.8	gi|379003331|ref|YP_005259003.1|	-	2.5e-09	36.2	0.3	3.7e-09	35.7	0.2	1.2	1	0	0	1	1	1	1	LppC	putative	lipoprotein
DUF3526	PF12040.3	gi|379003331|ref|YP_005259003.1|	-	0.17	12.0	0.0	0.31	11.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3526)
BPD_transp_2	PF02653.11	gi|379003332|ref|YP_005259004.1|	-	1.6e-35	122.3	42.2	2e-35	122.0	29.3	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|379003333|ref|YP_005259005.1|	-	7e-38	130.1	32.2	1.2e-37	129.3	22.3	1.3	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Colicin	PF01024.14	gi|379003333|ref|YP_005259005.1|	-	0.51	9.8	2.0	0.89	9.1	0.2	2.2	2	0	0	2	2	2	0	Colicin	pore	forming	domain
Ribosomal_L7Ae	PF01248.21	gi|379003334|ref|YP_005259006.1|	-	2.9e-28	97.2	0.9	3.8e-28	96.8	0.6	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|379003334|ref|YP_005259006.1|	-	0.00031	20.4	0.1	0.00047	19.8	0.0	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
RNase_P_pop3	PF08228.6	gi|379003334|ref|YP_005259006.1|	-	0.0062	16.3	0.0	0.0075	16.1	0.0	1.1	1	0	0	1	1	1	1	RNase	P	subunit	Pop3
Ribosomal_L24e	PF01246.15	gi|379003335|ref|YP_005259007.1|	-	7.5e-20	70.5	0.7	8e-20	70.4	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.9	gi|379003335|ref|YP_005259007.1|	-	0.0022	17.5	0.4	0.0034	16.9	0.3	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-MYND	PF01753.13	gi|379003335|ref|YP_005259007.1|	-	0.047	13.5	0.0	0.082	12.7	0.0	1.5	1	1	0	1	1	1	0	MYND	finger
zf-HIT	PF04438.11	gi|379003335|ref|YP_005259007.1|	-	0.98	9.1	5.5	7	6.3	3.8	2.0	1	1	0	1	1	1	0	HIT	zinc	finger
Ribosomal_S28e	PF01200.13	gi|379003336|ref|YP_005259008.1|	-	6.6e-32	109.0	2.3	7.5e-32	108.8	1.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S28e
tRNA-synt_1d	PF00750.14	gi|379003337|ref|YP_005259009.1|	-	3.3e-43	147.8	0.1	7.5e-30	103.9	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|379003337|ref|YP_005259009.1|	-	4.4e-28	97.6	0.6	3.6e-27	94.6	0.1	2.4	2	0	0	2	2	2	1	DALR	anticodon	binding	domain
tRNA-synt_1	PF00133.17	gi|379003337|ref|YP_005259009.1|	-	0.098	10.6	0.1	11	3.8	0.0	2.9	3	0	0	3	3	3	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|379003337|ref|YP_005259009.1|	-	0.16	10.5	0.1	3.7	6.0	0.0	2.4	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(M)
TetR_C_5	PF08360.6	gi|379003339|ref|YP_005259011.1|	-	0.078	12.9	0.0	0.095	12.6	0.0	1.1	1	0	0	1	1	1	0	QacR-like	protein,	C-terminal	region
DED	PF01335.16	gi|379003339|ref|YP_005259011.1|	-	0.11	12.5	0.1	2.9	8.0	0.0	2.2	2	0	0	2	2	2	0	Death	effector	domain
SUI1	PF01253.17	gi|379003340|ref|YP_005259012.1|	-	4.8e-20	71.1	0.7	6.5e-20	70.7	0.5	1.2	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
PNP_UDP_1	PF01048.15	gi|379003342|ref|YP_005259014.1|	-	2.2e-39	134.8	0.0	2.5e-39	134.6	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
eIF-5a	PF01287.15	gi|379003343|ref|YP_005259015.1|	-	2.4e-14	53.0	0.3	4.3e-14	52.1	0.2	1.4	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|379003343|ref|YP_005259015.1|	-	2.9e-06	27.0	0.0	6.4e-06	25.9	0.0	1.6	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	KOW-like	domain
KOW	PF00467.24	gi|379003343|ref|YP_005259015.1|	-	5.8e-05	22.6	1.1	0.00029	20.4	0.4	2.4	2	0	0	2	2	2	1	KOW	motif
EFP	PF01132.15	gi|379003343|ref|YP_005259015.1|	-	0.013	15.1	0.0	0.027	14.1	0.0	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
FluMu_gp41	PF10109.4	gi|379003343|ref|YP_005259015.1|	-	0.039	13.8	0.0	0.058	13.3	0.0	1.2	1	0	0	1	1	1	0	Mu-like	prophage	FluMu	protein	gp41
GTP_EFTU_D2	PF03144.20	gi|379003343|ref|YP_005259015.1|	-	0.15	12.2	0.8	2	8.6	0.2	2.7	1	1	2	3	3	3	0	Elongation	factor	Tu	domain	2
DUF655	PF04919.7	gi|379003344|ref|YP_005259016.1|	-	7.7e-51	172.3	2.1	9.1e-51	172.1	1.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.1	gi|379003344|ref|YP_005259016.1|	-	1.1e-05	25.3	1.0	2.7e-05	24.0	0.1	2.0	2	1	1	3	3	3	1	Helix-hairpin-helix	motif
HHH_3	PF12836.2	gi|379003344|ref|YP_005259016.1|	-	0.00042	20.2	0.9	0.0008	19.2	0.1	1.8	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH	PF00633.18	gi|379003344|ref|YP_005259016.1|	-	0.035	13.8	0.0	0.29	10.9	0.0	2.3	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
Lentivirus_VIF	PF05851.6	gi|379003344|ref|YP_005259016.1|	-	0.12	11.0	0.4	0.16	10.5	0.2	1.2	1	0	0	1	1	1	0	Lentivirus	virion	infectivity	factor	(VIF)
RNA_pol_Rpb4	PF03874.11	gi|379003345|ref|YP_005259017.1|	-	7.8e-12	45.2	2.5	1.1e-11	44.7	1.7	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
SMC_hinge	PF06470.8	gi|379003345|ref|YP_005259017.1|	-	0.042	13.8	0.0	0.065	13.2	0.0	1.3	1	0	0	1	1	1	0	SMC	proteins	Flexible	Hinge	Domain
CHASE3	PF05227.8	gi|379003345|ref|YP_005259017.1|	-	0.12	12.0	2.5	0.15	11.7	1.8	1.1	1	0	0	1	1	1	0	CHASE3	domain
Ribosomal_L21e	PF01157.13	gi|379003346|ref|YP_005259018.1|	-	2.4e-20	72.1	0.8	2.7e-20	72.0	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
DUF1138	PF06592.8	gi|379003346|ref|YP_005259018.1|	-	0.028	14.4	0.1	0.046	13.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1138)
ATP_bind_1	PF03029.12	gi|379003347|ref|YP_005259019.1|	-	1.5e-57	194.8	0.0	1.9e-57	194.5	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU	PF00009.22	gi|379003347|ref|YP_005259019.1|	-	5.6e-08	32.4	0.1	1.8e-06	27.5	0.0	2.1	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
ArgK	PF03308.11	gi|379003347|ref|YP_005259019.1|	-	1.5e-07	30.4	0.0	6.2e-05	21.9	0.0	2.5	2	1	0	2	2	2	1	ArgK	protein
MMR_HSR1	PF01926.18	gi|379003347|ref|YP_005259019.1|	-	2.4e-07	30.7	0.1	8.8e-07	28.8	0.0	1.9	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
CbiA	PF01656.18	gi|379003347|ref|YP_005259019.1|	-	1.5e-05	24.4	0.0	2e-05	24.0	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PduV-EutP	PF10662.4	gi|379003347|ref|YP_005259019.1|	-	2.4e-05	23.8	0.4	0.48	9.9	0.0	3.7	3	1	0	3	3	3	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_10	PF12846.2	gi|379003347|ref|YP_005259019.1|	-	2.9e-05	23.6	0.0	4.5e-05	23.0	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
cobW	PF02492.14	gi|379003347|ref|YP_005259019.1|	-	4.4e-05	22.9	0.3	0.14	11.5	0.1	2.3	2	1	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
ArsA_ATPase	PF02374.10	gi|379003347|ref|YP_005259019.1|	-	0.00073	18.6	0.2	0.0021	17.1	0.0	1.8	2	1	0	2	2	1	1	Anion-transporting	ATPase
MobB	PF03205.9	gi|379003347|ref|YP_005259019.1|	-	0.0013	18.4	0.0	0.0029	17.3	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Gtr1_RagA	PF04670.7	gi|379003347|ref|YP_005259019.1|	-	0.0013	17.9	1.3	0.0082	15.3	0.9	1.9	1	1	0	1	1	1	1	Gtr1/RagA	G	protein	conserved	region
AAA_17	PF13207.1	gi|379003347|ref|YP_005259019.1|	-	0.0022	18.7	0.0	0.0038	18.0	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Miro	PF08477.8	gi|379003347|ref|YP_005259019.1|	-	0.0029	18.0	0.5	0.033	14.7	0.3	2.2	1	1	0	1	1	1	1	Miro-like	protein
DUF258	PF03193.11	gi|379003347|ref|YP_005259019.1|	-	0.0029	16.8	0.2	0.068	12.3	0.1	2.6	2	1	0	2	2	2	1	Protein	of	unknown	function,	DUF258
DUF815	PF05673.8	gi|379003347|ref|YP_005259019.1|	-	0.0035	16.3	0.0	0.0056	15.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
DUF87	PF01935.12	gi|379003347|ref|YP_005259019.1|	-	0.0063	16.3	0.0	0.013	15.3	0.0	1.5	2	0	0	2	2	1	1	Domain	of	unknown	function	DUF87
AAA_16	PF13191.1	gi|379003347|ref|YP_005259019.1|	-	0.0066	16.4	0.0	0.0084	16.1	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
FeoB_N	PF02421.13	gi|379003347|ref|YP_005259019.1|	-	0.0067	15.7	0.2	0.92	8.7	0.1	2.6	3	0	0	3	3	2	1	Ferrous	iron	transport	protein	B
SRP54	PF00448.17	gi|379003347|ref|YP_005259019.1|	-	0.0076	15.7	0.0	0.023	14.1	0.0	1.7	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.1	gi|379003347|ref|YP_005259019.1|	-	0.0083	15.6	0.0	0.023	14.2	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|379003347|ref|YP_005259019.1|	-	0.01	16.1	0.0	0.018	15.3	0.0	1.7	1	1	0	1	1	1	0	ABC	transporter
SRPRB	PF09439.5	gi|379003347|ref|YP_005259019.1|	-	0.016	14.4	0.3	0.59	9.3	0.1	2.1	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
NTPase_1	PF03266.10	gi|379003347|ref|YP_005259019.1|	-	0.018	14.7	0.2	4.8	6.8	0.0	2.9	2	1	1	3	3	3	0	NTPase
AAA_30	PF13604.1	gi|379003347|ref|YP_005259019.1|	-	0.03	13.9	0.0	0.079	12.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
KAP_NTPase	PF07693.9	gi|379003347|ref|YP_005259019.1|	-	0.03	13.3	0.0	0.039	12.9	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
APS_kinase	PF01583.15	gi|379003347|ref|YP_005259019.1|	-	0.031	13.9	0.0	0.056	13.1	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
PTS_IIB	PF02302.12	gi|379003347|ref|YP_005259019.1|	-	0.04	14.3	0.3	1.8	9.0	0.1	2.9	2	1	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
AAA_18	PF13238.1	gi|379003347|ref|YP_005259019.1|	-	0.042	14.1	0.0	0.12	12.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|379003347|ref|YP_005259019.1|	-	0.053	13.3	1.8	3.6	7.3	0.3	2.3	2	0	0	2	2	2	0	Dynamin	family
TrwB_AAD_bind	PF10412.4	gi|379003347|ref|YP_005259019.1|	-	0.058	12.0	0.0	0.08	11.5	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_PrkA	PF08298.6	gi|379003347|ref|YP_005259019.1|	-	0.068	11.8	0.0	0.37	9.4	0.0	1.9	1	1	1	2	2	2	0	PrkA	AAA	domain
Sigma54_activ_2	PF14532.1	gi|379003347|ref|YP_005259019.1|	-	0.077	13.0	0.0	9.5	6.2	0.0	2.4	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_28	PF13521.1	gi|379003347|ref|YP_005259019.1|	-	0.085	12.8	0.0	0.13	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379003347|ref|YP_005259019.1|	-	0.094	12.8	0.1	0.27	11.3	0.0	2.1	1	1	1	2	2	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|379003347|ref|YP_005259019.1|	-	0.11	11.6	0.0	0.17	10.9	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
Parvo_NS1	PF01057.12	gi|379003347|ref|YP_005259019.1|	-	0.13	11.1	0.1	0.34	9.7	0.0	1.6	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
GerPB	PF10803.3	gi|379003347|ref|YP_005259019.1|	-	0.13	12.0	0.2	17	5.2	0.1	2.6	2	0	0	2	2	2	0	Spore	germination	GerPB
RNA_helicase	PF00910.17	gi|379003347|ref|YP_005259019.1|	-	0.15	12.2	0.0	0.92	9.7	0.0	2.1	2	1	0	2	2	2	0	RNA	helicase
SRP19	PF01922.12	gi|379003348|ref|YP_005259020.1|	-	8.6e-22	77.5	0.3	9.9e-22	77.3	0.2	1.0	1	0	0	1	1	1	1	SRP19	protein
Fe_dep_repress	PF01325.14	gi|379003348|ref|YP_005259020.1|	-	0.034	14.0	0.9	0.12	12.3	0.0	2.1	2	1	1	3	3	3	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Pro_3_hydrox_C	PF05373.6	gi|379003348|ref|YP_005259020.1|	-	0.1	12.6	0.0	0.12	12.3	0.0	1.2	1	0	0	1	1	1	0	L-proline	3-hydroxylase,	C-terminal
RuvA_C	PF07499.8	gi|379003348|ref|YP_005259020.1|	-	0.12	12.5	0.0	0.12	12.5	0.0	1.6	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
Ribosomal_S8e	PF01201.17	gi|379003349|ref|YP_005259021.1|	-	2.4e-29	102.1	1.6	2.7e-29	101.9	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
Gar1	PF04410.9	gi|379003350|ref|YP_005259022.1|	-	0.00042	19.8	0.1	0.00044	19.7	0.1	1.1	1	0	0	1	1	1	1	Gar1/Naf1	RNA	binding	region
TF_Zn_Ribbon	PF08271.7	gi|379003351|ref|YP_005259023.1|	-	3.2e-14	51.9	0.5	5.6e-14	51.1	0.4	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
TFIIB	PF00382.14	gi|379003351|ref|YP_005259023.1|	-	8.3e-11	41.5	0.2	4.2e-08	32.8	0.1	2.4	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
Prim_Zn_Ribbon	PF08273.7	gi|379003351|ref|YP_005259023.1|	-	0.00028	20.9	0.5	0.00044	20.2	0.3	1.2	1	0	0	1	1	1	1	Zinc-binding	domain	of	primase-helicase
Lar_restr_allev	PF14354.1	gi|379003351|ref|YP_005259023.1|	-	0.0064	16.7	0.4	0.012	15.9	0.3	1.4	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.6	gi|379003351|ref|YP_005259023.1|	-	0.0064	16.1	1.1	0.017	14.8	0.8	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003351|ref|YP_005259023.1|	-	0.012	15.3	0.3	0.028	14.2	0.2	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003351|ref|YP_005259023.1|	-	0.015	14.4	0.7	3.4	7.0	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|379003351|ref|YP_005259023.1|	-	0.046	13.5	0.2	0.08	12.7	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HTH_24	PF13412.1	gi|379003351|ref|YP_005259023.1|	-	0.046	13.1	0.0	0.17	11.2	0.0	2.0	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Elf1	PF05129.8	gi|379003351|ref|YP_005259023.1|	-	0.066	12.9	0.4	0.16	11.6	0.3	1.6	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Ribosomal_S27e	PF01667.12	gi|379003351|ref|YP_005259023.1|	-	0.078	12.5	1.4	0.15	11.6	1.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
RRN7	PF11781.3	gi|379003351|ref|YP_005259023.1|	-	0.11	11.9	1.8	0.24	10.9	1.2	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Prok-RING_1	PF14446.1	gi|379003351|ref|YP_005259023.1|	-	0.12	12.0	1.3	0.21	11.3	0.9	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
A2L_zn_ribbon	PF08792.5	gi|379003351|ref|YP_005259023.1|	-	0.17	11.4	0.8	0.27	10.7	0.5	1.3	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
PhrC_PhrF	PF11131.3	gi|379003351|ref|YP_005259023.1|	-	0.41	10.2	2.3	0.82	9.2	1.6	1.4	1	0	0	1	1	1	0	Rap-phr	extracellular	signalling
zf-FPG_IleRS	PF06827.9	gi|379003351|ref|YP_005259023.1|	-	0.44	10.2	2.6	1.2	8.8	1.6	2.0	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
Zn-ribbon_8	PF09723.5	gi|379003351|ref|YP_005259023.1|	-	0.55	10.2	2.2	3.1	7.8	0.1	2.3	1	1	1	2	2	2	0	Zinc	ribbon	domain
Nudix_N_2	PF14803.1	gi|379003351|ref|YP_005259023.1|	-	1.1	9.0	4.3	2.3	7.9	2.9	1.6	1	0	0	1	1	1	0	Nudix	N-terminal
zf-IS66	PF13005.2	gi|379003351|ref|YP_005259023.1|	-	1.6	8.8	5.2	13	5.9	0.1	2.9	3	0	0	3	3	2	0	zinc-finger	binding	domain	of	transposase	IS66
MarR	PF01047.17	gi|379003352|ref|YP_005259024.1|	-	3.1e-07	30.0	0.0	2e-06	27.4	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|379003352|ref|YP_005259024.1|	-	0.00074	19.7	0.1	0.001	19.3	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Sulfolobus_pRN	PF05584.6	gi|379003352|ref|YP_005259024.1|	-	0.0026	17.7	0.3	0.0039	17.1	0.2	1.3	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
B-block_TFIIIC	PF04182.7	gi|379003352|ref|YP_005259024.1|	-	0.0037	17.0	0.0	0.0063	16.3	0.0	1.4	1	1	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR_2	PF12802.2	gi|379003352|ref|YP_005259024.1|	-	0.012	15.2	0.0	0.019	14.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DUF2250	PF10007.4	gi|379003352|ref|YP_005259024.1|	-	0.028	14.3	0.0	0.048	13.5	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
PadR	PF03551.9	gi|379003352|ref|YP_005259024.1|	-	0.041	13.6	0.1	0.089	12.5	0.0	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
PaaX	PF07848.7	gi|379003352|ref|YP_005259024.1|	-	0.1	12.6	0.1	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	PaaX-like	protein
LigT_PEase	PF02834.11	gi|379003353|ref|YP_005259025.1|	-	7.9e-32	109.0	0.3	4.7e-18	64.9	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|379003353|ref|YP_005259025.1|	-	7e-17	61.5	0.0	8.7e-17	61.2	0.0	1.2	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|379003353|ref|YP_005259025.1|	-	5.5e-15	55.6	0.0	7.8e-15	55.1	0.0	1.1	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
DUF2924	PF11149.3	gi|379003353|ref|YP_005259025.1|	-	0.12	12.4	0.0	0.19	11.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2924)
tRNA_NucTransf2	PF09249.6	gi|379003354|ref|YP_005259026.1|	-	6.3e-43	145.2	0.0	1.3e-42	144.2	0.0	1.5	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|379003354|ref|YP_005259026.1|	-	7.6e-14	51.8	0.0	1.9e-13	50.5	0.0	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF3153	PF11353.3	gi|379003355|ref|YP_005259027.1|	-	0.025	13.9	0.2	0.03	13.7	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3153)
V-SNARE	PF05008.10	gi|379003355|ref|YP_005259027.1|	-	0.031	14.4	0.2	0.071	13.2	0.2	1.7	1	1	0	1	1	1	0	Vesicle	transport	v-SNARE	protein	N-terminus
Myosin_tail_1	PF01576.14	gi|379003355|ref|YP_005259027.1|	-	0.044	11.4	0.3	0.057	11.1	0.2	1.1	1	0	0	1	1	1	0	Myosin	tail
Osmo_CC	PF08946.5	gi|379003355|ref|YP_005259027.1|	-	0.058	13.4	0.8	0.6	10.1	0.0	2.4	2	0	0	2	2	2	0	Osmosensory	transporter	coiled	coil
ATP-synt_ab_C	PF00306.22	gi|379003355|ref|YP_005259027.1|	-	0.071	13.5	0.3	0.1	13.0	0.2	1.4	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	chain,	C	terminal	domain
BLOC1_2	PF10046.4	gi|379003355|ref|YP_005259027.1|	-	0.072	13.2	0.6	0.25	11.4	0.1	2.0	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
GAS	PF13851.1	gi|379003355|ref|YP_005259027.1|	-	0.074	12.2	1.4	0.15	11.2	0.9	1.6	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
BssS	PF13991.1	gi|379003355|ref|YP_005259027.1|	-	0.074	12.7	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	BssS	protein	family
GreA_GreB_N	PF03449.10	gi|379003355|ref|YP_005259027.1|	-	0.086	12.9	1.9	3.6	7.7	0.0	3.0	3	0	0	3	3	3	0	Transcription	elongation	factor,	N-terminal
DegS	PF05384.6	gi|379003355|ref|YP_005259027.1|	-	0.11	11.6	4.9	2.7	7.1	0.4	2.1	2	0	0	2	2	2	0	Sensor	protein	DegS
Prefoldin	PF02996.12	gi|379003355|ref|YP_005259027.1|	-	0.15	11.7	2.5	1.6	8.4	0.2	2.6	2	1	1	3	3	3	0	Prefoldin	subunit
DUF2951	PF11166.3	gi|379003355|ref|YP_005259027.1|	-	0.22	11.3	1.3	1.2	9.0	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2951)
Med9	PF07544.8	gi|379003355|ref|YP_005259027.1|	-	0.31	10.8	3.4	0.18	11.5	0.7	1.8	2	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
IncA	PF04156.9	gi|379003355|ref|YP_005259027.1|	-	0.49	9.9	3.4	0.93	9.0	2.3	1.6	1	1	0	1	1	1	0	IncA	protein
DUF89	PF01937.14	gi|379003356|ref|YP_005259028.1|	-	3.7e-17	62.1	0.1	3.6e-15	55.6	0.1	2.5	2	1	0	2	2	2	2	Protein	of	unknown	function	DUF89
Aminotran_5	PF00266.14	gi|379003357|ref|YP_005259029.1|	-	3.3e-22	78.7	0.0	4.5e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|379003357|ref|YP_005259029.1|	-	0.00024	19.5	0.0	0.00036	18.9	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_1_2	PF00155.16	gi|379003357|ref|YP_005259029.1|	-	0.0022	17.0	0.0	0.038	12.9	0.0	2.1	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
SHMT	PF00464.14	gi|379003357|ref|YP_005259029.1|	-	0.03	12.6	0.0	0.043	12.1	0.0	1.2	1	0	0	1	1	1	0	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.16	gi|379003357|ref|YP_005259029.1|	-	0.052	12.6	0.0	0.1	11.6	0.0	1.7	1	1	0	1	1	1	0	Beta-eliminating	lyase
2-Hacid_dh_C	PF02826.14	gi|379003358|ref|YP_005259030.1|	-	1.5e-54	183.8	0.0	2e-54	183.4	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|379003358|ref|YP_005259030.1|	-	4.6e-29	100.5	0.0	5.7e-29	100.2	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
IlvN	PF07991.7	gi|379003358|ref|YP_005259030.1|	-	0.0011	18.3	0.0	0.0031	16.9	0.0	1.7	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
AdoHcyase_NAD	PF00670.16	gi|379003358|ref|YP_005259030.1|	-	0.0017	18.2	0.0	0.0034	17.2	0.0	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379003358|ref|YP_005259030.1|	-	0.0077	16.6	0.0	0.026	14.9	0.0	2.0	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|379003358|ref|YP_005259030.1|	-	0.025	14.4	0.0	0.06	13.1	0.0	1.6	2	0	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Gp_dh_N	PF00044.19	gi|379003358|ref|YP_005259030.1|	-	0.05	13.5	0.2	0.093	12.6	0.1	1.4	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
IF2_N	PF04760.10	gi|379003358|ref|YP_005259030.1|	-	0.18	11.4	1.0	21	4.8	0.0	3.0	3	0	0	3	3	3	0	Translation	initiation	factor	IF-2,	N-terminal	region
CBS	PF00571.23	gi|379003359|ref|YP_005259031.1|	-	9.6e-33	111.7	3.2	3.5e-18	65.1	0.6	3.4	3	0	0	3	3	3	2	CBS	domain
HrcA_DNA-bdg	PF03444.10	gi|379003359|ref|YP_005259031.1|	-	2.2e-30	103.9	0.1	5.8e-30	102.5	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.15	gi|379003359|ref|YP_005259031.1|	-	3.6e-10	39.8	0.0	7e-10	38.8	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|379003359|ref|YP_005259031.1|	-	3.3e-05	23.7	0.0	7.2e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF4423	PF14394.1	gi|379003359|ref|YP_005259031.1|	-	0.00014	21.4	0.0	0.00027	20.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_11	PF08279.7	gi|379003359|ref|YP_005259031.1|	-	0.00027	20.5	0.4	0.00096	18.7	0.0	2.2	3	0	0	3	3	3	1	HTH	domain
Rio2_N	PF09202.6	gi|379003359|ref|YP_005259031.1|	-	0.0032	17.5	0.0	0.0059	16.6	0.0	1.4	1	0	0	1	1	1	1	Rio2,	N-terminal
TrmB	PF01978.14	gi|379003359|ref|YP_005259031.1|	-	0.0054	16.4	1.2	0.035	13.7	0.1	2.6	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
FeoC	PF09012.5	gi|379003359|ref|YP_005259031.1|	-	0.007	16.0	0.0	0.015	14.9	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
MarR	PF01047.17	gi|379003359|ref|YP_005259031.1|	-	0.0075	15.9	0.0	0.016	14.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|379003359|ref|YP_005259031.1|	-	0.014	15.0	0.7	0.06	13.0	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|379003359|ref|YP_005259031.1|	-	0.068	12.8	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF2250	PF10007.4	gi|379003359|ref|YP_005259031.1|	-	0.14	12.1	0.0	0.27	11.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
PfkB	PF00294.19	gi|379003360|ref|YP_005259032.1|	-	1.1e-11	44.4	0.1	3.9e-10	39.3	0.0	2.1	2	0	0	2	2	2	2	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|379003360|ref|YP_005259032.1|	-	0.0056	15.9	0.0	0.013	14.6	0.0	1.6	2	0	0	2	2	2	1	Phosphomethylpyrimidine	kinase
ABC_tran	PF00005.22	gi|379003361|ref|YP_005259033.1|	-	5.8e-28	97.9	0.0	7.9e-28	97.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|379003361|ref|YP_005259033.1|	-	5.2e-20	71.5	0.4	8.5e-20	70.8	0.3	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|379003361|ref|YP_005259033.1|	-	1e-08	35.5	0.9	1.3e-06	28.5	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|379003361|ref|YP_005259033.1|	-	6.2e-07	28.8	0.3	1.1e-05	24.8	0.2	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379003361|ref|YP_005259033.1|	-	0.00031	20.2	0.0	0.00056	19.3	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|379003361|ref|YP_005259033.1|	-	0.00065	18.9	0.0	0.0011	18.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|379003361|ref|YP_005259033.1|	-	0.00081	19.5	0.2	0.012	15.7	0.2	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379003361|ref|YP_005259033.1|	-	0.0011	18.4	0.1	0.11	11.8	0.0	2.1	1	1	1	2	2	2	1	AAA-like	domain
AAA_16	PF13191.1	gi|379003361|ref|YP_005259033.1|	-	0.0035	17.3	0.0	0.006	16.5	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|379003361|ref|YP_005259033.1|	-	0.0073	15.7	0.1	0.13	11.6	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
SbcCD_C	PF13558.1	gi|379003361|ref|YP_005259033.1|	-	0.0094	15.8	0.0	0.036	13.9	0.0	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.9	gi|379003361|ref|YP_005259033.1|	-	0.03	14.0	0.0	0.13	11.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|379003361|ref|YP_005259033.1|	-	0.031	13.6	0.1	0.11	11.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379003361|ref|YP_005259033.1|	-	0.032	13.3	0.0	0.14	11.2	0.0	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
AAA_15	PF13175.1	gi|379003361|ref|YP_005259033.1|	-	0.034	13.1	0.3	1.8	7.4	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
NACHT	PF05729.7	gi|379003361|ref|YP_005259033.1|	-	0.043	13.4	0.0	0.1	12.2	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.22	gi|379003362|ref|YP_005259034.1|	-	1e-30	106.8	0.0	1.3e-30	106.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|379003362|ref|YP_005259034.1|	-	1.1e-20	73.7	1.1	2.3e-20	72.6	0.8	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|379003362|ref|YP_005259034.1|	-	4.5e-09	36.6	0.1	5.1e-05	23.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|379003362|ref|YP_005259034.1|	-	4e-06	26.9	0.4	8.6e-05	22.6	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003362|ref|YP_005259034.1|	-	0.00052	20.0	0.0	0.00095	19.1	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|379003362|ref|YP_005259034.1|	-	0.00095	18.6	0.1	0.0017	17.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|379003362|ref|YP_005259034.1|	-	0.002	17.8	0.1	0.0031	17.2	0.1	1.2	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|379003362|ref|YP_005259034.1|	-	0.0028	17.1	0.0	0.057	12.8	0.0	2.1	1	1	1	2	2	2	1	AAA-like	domain
KaiC	PF06745.8	gi|379003362|ref|YP_005259034.1|	-	0.012	14.7	0.8	0.41	9.7	0.1	2.1	2	0	0	2	2	2	0	KaiC
AAA_33	PF13671.1	gi|379003362|ref|YP_005259034.1|	-	0.012	15.4	0.0	0.045	13.6	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|379003362|ref|YP_005259034.1|	-	0.013	14.0	0.0	0.34	9.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|379003362|ref|YP_005259034.1|	-	0.022	14.1	0.2	0.26	10.6	0.2	2.1	2	0	0	2	2	2	0	AAA	domain
T2SE	PF00437.15	gi|379003362|ref|YP_005259034.1|	-	0.034	13.0	0.1	0.052	12.4	0.1	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
UPF0079	PF02367.12	gi|379003362|ref|YP_005259034.1|	-	0.059	12.9	0.2	0.12	12.0	0.2	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_18	PF13238.1	gi|379003362|ref|YP_005259034.1|	-	0.064	13.5	0.0	0.1	12.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379003362|ref|YP_005259034.1|	-	0.066	12.8	0.3	0.13	11.9	0.2	1.5	1	0	0	1	1	1	0	NACHT	domain
SMC_N	PF02463.14	gi|379003362|ref|YP_005259034.1|	-	0.079	12.1	0.0	4.7	6.3	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
DUF2249	PF10006.4	gi|379003362|ref|YP_005259034.1|	-	0.093	12.3	0.8	0.23	11.0	0.1	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
AAA_30	PF13604.1	gi|379003362|ref|YP_005259034.1|	-	0.098	12.2	0.1	0.22	11.0	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|379003362|ref|YP_005259034.1|	-	0.14	13.0	0.8	0.9	10.3	0.4	2.2	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379003362|ref|YP_005259034.1|	-	0.14	11.8	0.0	0.47	10.2	0.0	1.8	2	0	0	2	2	2	0	Part	of	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379003362|ref|YP_005259034.1|	-	0.16	11.4	0.1	0.32	10.4	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
Ribosomal_S4e	PF00900.15	gi|379003364|ref|YP_005259036.1|	-	3.8e-27	93.7	0.0	7.3e-27	92.8	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	family	S4e
RS4NT	PF08071.7	gi|379003364|ref|YP_005259036.1|	-	5.3e-12	45.3	4.5	1.2e-11	44.2	3.1	1.6	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
S4	PF01479.20	gi|379003364|ref|YP_005259036.1|	-	1.5e-09	37.1	1.0	2.1e-09	36.6	0.2	1.7	2	0	0	2	2	2	1	S4	domain
Alginate_exp	PF13372.1	gi|379003364|ref|YP_005259036.1|	-	0.051	12.2	0.0	0.055	12.0	0.0	1.1	1	0	0	1	1	1	0	Alginate	export
KOW	PF00467.24	gi|379003365|ref|YP_005259037.1|	-	1.1e-10	40.7	3.9	1.1e-10	40.7	2.7	2.2	2	0	0	2	2	2	1	KOW	motif
LytTR	PF04397.10	gi|379003366|ref|YP_005259038.1|	-	0.011	15.7	0.6	0.012	15.7	0.4	1.1	1	0	0	1	1	1	0	LytTr	DNA-binding	domain
DUF919	PF06034.6	gi|379003366|ref|YP_005259038.1|	-	0.72	9.5	3.7	0.95	9.1	2.6	1.4	1	1	0	1	1	1	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF919)
Beta-Casp	PF10996.3	gi|379003367|ref|YP_005259039.1|	-	4.4e-20	71.8	0.0	9.3e-20	70.8	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|379003367|ref|YP_005259039.1|	-	4.5e-19	68.8	0.2	1.8e-18	66.9	0.1	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|379003367|ref|YP_005259039.1|	-	5.1e-14	51.8	0.0	9e-14	51.0	0.0	1.4	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|379003367|ref|YP_005259039.1|	-	5.4e-13	48.9	0.0	9.9e-13	48.0	0.0	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Methyltransf_26	PF13659.1	gi|379003367|ref|YP_005259039.1|	-	0.13	12.3	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
NUDIX	PF00293.23	gi|379003371|ref|YP_005259043.1|	-	1.3e-14	53.9	0.2	2.5e-14	53.0	0.2	1.4	1	1	0	1	1	1	1	NUDIX	domain
TPP_enzyme_N	PF02776.13	gi|379003372|ref|YP_005259044.1|	-	1.1e-46	158.4	2.4	2.1e-46	157.5	0.4	2.4	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|379003372|ref|YP_005259044.1|	-	2.4e-42	144.1	0.0	4.7e-41	139.8	0.0	2.4	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|379003372|ref|YP_005259044.1|	-	1.1e-39	135.2	0.0	7.9e-39	132.5	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
DUF552	PF04472.7	gi|379003372|ref|YP_005259044.1|	-	0.0075	16.1	0.1	0.019	14.8	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF552)
ACT_5	PF13710.1	gi|379003373|ref|YP_005259045.1|	-	2e-12	46.7	0.1	2.3e-12	46.5	0.1	1.1	1	0	0	1	1	1	1	ACT	domain
IlvN	PF07991.7	gi|379003374|ref|YP_005259046.1|	-	6.6e-75	250.0	0.2	1.2e-74	249.2	0.1	1.4	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|379003374|ref|YP_005259046.1|	-	2.3e-47	160.5	0.2	3.8e-47	159.8	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|379003374|ref|YP_005259046.1|	-	3.5e-07	30.5	0.2	1.1e-06	28.9	0.0	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|379003374|ref|YP_005259046.1|	-	5.4e-07	29.5	0.0	1.3e-06	28.3	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|379003374|ref|YP_005259046.1|	-	7.5e-07	28.4	0.0	1.8e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|379003374|ref|YP_005259046.1|	-	0.00016	21.1	0.0	0.00036	19.9	0.0	1.6	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
AdoHcyase_NAD	PF00670.16	gi|379003374|ref|YP_005259046.1|	-	0.00056	19.8	0.0	0.0018	18.1	0.0	1.8	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
CoA_binding	PF02629.14	gi|379003374|ref|YP_005259046.1|	-	0.056	13.9	0.1	0.17	12.4	0.0	1.9	2	0	0	2	2	2	0	CoA	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379003374|ref|YP_005259046.1|	-	0.19	11.4	0.5	12	5.6	0.4	2.6	1	1	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Aminotran_4	PF01063.14	gi|379003375|ref|YP_005259047.1|	-	2.6e-49	167.7	0.0	3.1e-49	167.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	IV
DMRL_synthase	PF00885.14	gi|379003376|ref|YP_005259048.1|	-	7.5e-39	132.6	2.2	8.4e-39	132.5	1.6	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
Metallophos_3	PF14582.1	gi|379003376|ref|YP_005259048.1|	-	0.048	12.8	0.1	0.078	12.1	0.0	1.4	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
HSP70	PF00012.15	gi|379003376|ref|YP_005259048.1|	-	0.058	11.3	0.2	0.065	11.1	0.1	1.1	1	0	0	1	1	1	0	Hsp70	protein
Usp	PF00582.21	gi|379003376|ref|YP_005259048.1|	-	0.093	12.9	5.1	0.28	11.3	0.3	2.1	2	0	0	2	2	2	0	Universal	stress	protein	family
DUF3356	PF11836.3	gi|379003376|ref|YP_005259048.1|	-	0.34	10.7	2.2	2.5	7.9	0.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3356)
TrmB	PF01978.14	gi|379003377|ref|YP_005259049.1|	-	0.00013	21.5	0.2	0.00015	21.3	0.2	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379003377|ref|YP_005259049.1|	-	0.00032	20.2	0.0	0.00042	19.9	0.0	1.1	1	0	0	1	1	1	1	MarR	family
LexA_DNA_bind	PF01726.11	gi|379003377|ref|YP_005259049.1|	-	0.0008	18.9	0.0	0.00092	18.7	0.0	1.2	1	0	0	1	1	1	1	LexA	DNA	binding	domain
RuvB_C	PF05491.8	gi|379003377|ref|YP_005259049.1|	-	0.0028	17.2	0.0	0.0031	17.0	0.0	1.1	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_11	PF08279.7	gi|379003377|ref|YP_005259049.1|	-	0.0054	16.3	0.0	0.0061	16.1	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
Sigma70_r3	PF04539.11	gi|379003377|ref|YP_005259049.1|	-	0.0093	15.8	0.0	0.013	15.4	0.0	1.2	1	0	0	1	1	1	1	Sigma-70	region	3
FaeA	PF04703.7	gi|379003377|ref|YP_005259049.1|	-	0.0095	16.0	0.1	0.012	15.7	0.1	1.1	1	0	0	1	1	1	1	FaeA-like	protein
FeoC	PF09012.5	gi|379003377|ref|YP_005259049.1|	-	0.011	15.4	0.0	0.013	15.2	0.0	1.1	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
MotA_activ	PF09114.5	gi|379003377|ref|YP_005259049.1|	-	0.014	15.1	0.1	0.016	14.9	0.1	1.1	1	0	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
HTH_27	PF13463.1	gi|379003377|ref|YP_005259049.1|	-	0.016	15.4	0.0	0.019	15.3	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Lipoprotein_Ltp	PF07553.6	gi|379003377|ref|YP_005259049.1|	-	0.018	14.8	0.2	0.032	14.0	0.0	1.5	2	0	0	2	2	2	0	Host	cell	surface-exposed	lipoprotein
PaaX	PF07848.7	gi|379003377|ref|YP_005259049.1|	-	0.026	14.4	0.0	0.028	14.4	0.0	1.1	1	0	0	1	1	1	0	PaaX-like	protein
HTH_20	PF12840.2	gi|379003377|ref|YP_005259049.1|	-	0.035	13.9	0.0	0.041	13.6	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF1828	PF08861.5	gi|379003377|ref|YP_005259049.1|	-	0.039	13.6	0.0	0.043	13.4	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF1828
RNA_pol_Rpc34	PF05158.7	gi|379003377|ref|YP_005259049.1|	-	0.047	12.8	0.0	0.049	12.8	0.0	1.0	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Rrf2	PF02082.15	gi|379003377|ref|YP_005259049.1|	-	0.048	13.7	0.0	0.054	13.6	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator
DUF1495	PF07381.6	gi|379003377|ref|YP_005259049.1|	-	0.054	13.1	0.0	0.068	12.8	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF4423	PF14394.1	gi|379003377|ref|YP_005259049.1|	-	0.068	12.7	0.1	0.072	12.6	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
z-alpha	PF02295.12	gi|379003377|ref|YP_005259049.1|	-	0.085	12.6	0.0	0.092	12.5	0.0	1.1	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
EAP30	PF04157.11	gi|379003377|ref|YP_005259049.1|	-	0.1	11.7	0.0	0.12	11.5	0.0	1.0	1	0	0	1	1	1	0	EAP30/Vps36	family
polyprenyl_synt	PF00348.12	gi|379003378|ref|YP_005259050.1|	-	1.9e-25	89.1	0.1	2.9e-25	88.6	0.1	1.3	1	0	0	1	1	1	1	Polyprenyl	synthetase
NTPase_1	PF03266.10	gi|379003379|ref|YP_005259051.1|	-	2.8e-48	163.8	0.0	3.1e-48	163.6	0.0	1.0	1	0	0	1	1	1	1	NTPase
DUF2478	PF10649.4	gi|379003379|ref|YP_005259051.1|	-	7.6e-09	35.0	0.0	1.4e-08	34.2	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2478)
AAA_17	PF13207.1	gi|379003379|ref|YP_005259051.1|	-	0.0001	23.1	0.1	0.00018	22.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|379003379|ref|YP_005259051.1|	-	0.00026	21.2	0.1	0.00062	20.0	0.1	1.6	1	0	0	1	1	1	1	AAA	domain
Viral_helicase1	PF01443.13	gi|379003379|ref|YP_005259051.1|	-	0.0015	18.1	0.4	0.11	11.9	0.1	2.1	1	1	1	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
ArgK	PF03308.11	gi|379003379|ref|YP_005259051.1|	-	0.0015	17.3	0.7	0.0034	16.1	0.5	1.7	1	1	0	1	1	1	1	ArgK	protein
CbiA	PF01656.18	gi|379003379|ref|YP_005259051.1|	-	0.0016	17.8	0.5	0.02	14.3	0.4	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA	PF00004.24	gi|379003379|ref|YP_005259051.1|	-	0.0036	17.5	0.3	0.0097	16.1	0.2	1.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379003379|ref|YP_005259051.1|	-	0.0043	17.1	0.1	0.035	14.2	0.1	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003379|ref|YP_005259051.1|	-	0.0061	16.2	0.4	0.014	15.1	0.2	1.6	1	1	0	1	1	1	1	Part	of	AAA	domain
cobW	PF02492.14	gi|379003379|ref|YP_005259051.1|	-	0.0062	15.9	0.3	0.0068	15.8	0.2	1.3	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.17	gi|379003379|ref|YP_005259051.1|	-	0.0069	15.2	0.1	0.011	14.5	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
MobB	PF03205.9	gi|379003379|ref|YP_005259051.1|	-	0.0078	15.9	0.2	0.024	14.3	0.1	1.8	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|379003379|ref|YP_005259051.1|	-	0.0085	16.0	0.1	0.015	15.2	0.1	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.1	gi|379003379|ref|YP_005259051.1|	-	0.011	15.7	0.1	0.02	14.8	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379003379|ref|YP_005259051.1|	-	0.019	14.9	0.2	0.026	14.4	0.2	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
SRP54	PF00448.17	gi|379003379|ref|YP_005259051.1|	-	0.02	14.3	0.5	0.09	12.2	0.4	2.0	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_25	PF13481.1	gi|379003379|ref|YP_005259051.1|	-	0.021	14.2	0.0	0.054	12.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|379003379|ref|YP_005259051.1|	-	0.021	14.4	0.1	0.073	12.7	0.1	1.7	2	0	0	2	2	2	0	NACHT	domain
IstB_IS21	PF01695.12	gi|379003379|ref|YP_005259051.1|	-	0.04	13.3	0.0	5.4	6.3	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
DUF3388	PF11868.3	gi|379003379|ref|YP_005259051.1|	-	0.046	12.8	0.1	0.076	12.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3388)
AAA_30	PF13604.1	gi|379003379|ref|YP_005259051.1|	-	0.06	12.9	0.2	0.15	11.5	0.2	1.7	1	1	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|379003379|ref|YP_005259051.1|	-	0.072	13.5	0.1	0.11	13.0	0.1	1.3	1	0	0	1	1	1	0	Miro-like	protein
Phage_P2_GpE	PF06528.7	gi|379003379|ref|YP_005259051.1|	-	0.074	12.4	0.1	0.14	11.6	0.1	1.5	1	0	0	1	1	1	0	Phage	P2	GpE
KaiC	PF06745.8	gi|379003379|ref|YP_005259051.1|	-	0.08	12.0	0.1	0.12	11.4	0.1	1.2	1	0	0	1	1	1	0	KaiC
ATP_bind_1	PF03029.12	gi|379003379|ref|YP_005259051.1|	-	0.1	12.1	0.1	0.15	11.5	0.1	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_14	PF13173.1	gi|379003379|ref|YP_005259051.1|	-	0.12	12.3	0.0	0.23	11.3	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
DnaB_C	PF03796.10	gi|379003379|ref|YP_005259051.1|	-	0.13	11.0	0.0	0.43	9.4	0.0	1.8	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
DAP3	PF10236.4	gi|379003379|ref|YP_005259051.1|	-	0.15	11.0	0.2	0.27	10.1	0.0	1.4	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
Ras	PF00071.17	gi|379003380|ref|YP_005259052.1|	-	2.1e-08	33.7	0.6	1.8e-07	30.6	0.4	1.9	1	1	0	1	1	1	1	Ras	family
Arf	PF00025.16	gi|379003380|ref|YP_005259052.1|	-	4.6e-08	32.4	0.0	5.4e-08	32.2	0.0	1.1	1	0	0	1	1	1	1	ADP-ribosylation	factor	family
Miro	PF08477.8	gi|379003380|ref|YP_005259052.1|	-	5.5e-07	30.0	0.0	8.5e-07	29.4	0.0	1.3	1	0	0	1	1	1	1	Miro-like	protein
MMR_HSR1	PF01926.18	gi|379003380|ref|YP_005259052.1|	-	1.5e-05	24.9	0.0	2e-05	24.5	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|379003380|ref|YP_005259052.1|	-	0.00019	20.7	0.0	0.00025	20.3	0.0	1.1	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Gtr1_RagA	PF04670.7	gi|379003380|ref|YP_005259052.1|	-	0.01	14.9	0.1	0.016	14.3	0.0	1.3	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
FeoB_N	PF02421.13	gi|379003380|ref|YP_005259052.1|	-	0.017	14.3	0.0	0.32	10.2	0.0	2.1	1	1	0	1	1	1	0	Ferrous	iron	transport	protein	B
AAA_33	PF13671.1	gi|379003380|ref|YP_005259052.1|	-	0.045	13.6	0.1	0.046	13.5	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|379003380|ref|YP_005259052.1|	-	0.065	12.0	0.1	0.1	11.4	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.1	gi|379003380|ref|YP_005259052.1|	-	0.068	13.9	0.1	0.1	13.4	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379003380|ref|YP_005259052.1|	-	0.11	12.7	0.0	0.28	11.4	0.0	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ANF_receptor	PF01094.23	gi|379003380|ref|YP_005259052.1|	-	0.14	10.8	0.0	0.69	8.6	0.0	1.7	1	1	0	2	2	2	0	Receptor	family	ligand	binding	region
eRF1_1	PF03463.10	gi|379003382|ref|YP_005259054.1|	-	5.5e-24	84.2	0.1	8.7e-24	83.5	0.1	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|379003382|ref|YP_005259054.1|	-	3.5e-09	36.9	0.2	5e-08	33.1	0.0	2.8	2	1	0	2	2	2	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|379003382|ref|YP_005259054.1|	-	0.0038	17.5	0.0	0.011	16.0	0.0	1.8	1	1	0	1	1	1	1	eRF1	domain	2
BMC	PF00936.14	gi|379003382|ref|YP_005259054.1|	-	0.18	11.4	1.3	11	5.7	0.4	3.2	2	1	0	2	2	2	0	BMC	domain
Thioredoxin_4	PF13462.1	gi|379003384|ref|YP_005259056.1|	-	8.4e-20	71.4	0.0	1e-19	71.1	0.0	1.1	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|379003384|ref|YP_005259056.1|	-	0.0058	16.1	1.3	0.96	8.9	0.1	2.3	1	1	1	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|379003384|ref|YP_005259056.1|	-	0.0059	16.7	0.0	0.023	14.8	0.0	1.9	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF359	PF04019.7	gi|379003385|ref|YP_005259057.1|	-	1.4e-31	108.4	0.0	1.7e-31	108.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Lactamase_B_2	PF12706.2	gi|379003386|ref|YP_005259058.1|	-	1e-30	106.7	0.0	1.2e-30	106.4	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379003386|ref|YP_005259058.1|	-	9.6e-10	38.4	0.3	1.2e-09	38.0	0.2	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|379003386|ref|YP_005259058.1|	-	9.3e-05	22.1	0.1	0.00015	21.4	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
UDPG_MGDP_dh_N	PF03721.9	gi|379003387|ref|YP_005259059.1|	-	7e-39	133.1	0.9	1.4e-38	132.1	0.6	1.5	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh_C	PF03720.10	gi|379003387|ref|YP_005259059.1|	-	5.3e-24	84.3	0.0	1.2e-23	83.2	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|379003387|ref|YP_005259059.1|	-	8.7e-19	67.5	0.0	2e-18	66.3	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
2-Hacid_dh_C	PF02826.14	gi|379003387|ref|YP_005259059.1|	-	0.0003	19.9	0.1	0.78	8.8	0.0	2.4	2	0	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|379003387|ref|YP_005259059.1|	-	0.00061	19.6	0.7	0.0057	16.5	0.2	2.6	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379003387|ref|YP_005259059.1|	-	0.0012	18.6	1.4	0.35	10.5	0.2	2.6	2	0	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|379003387|ref|YP_005259059.1|	-	0.0081	16.5	4.1	3.3	8.2	0.0	4.0	3	1	1	4	4	4	1	NADP	oxidoreductase	coenzyme	F420-dependent
ThiF	PF00899.16	gi|379003387|ref|YP_005259059.1|	-	0.019	14.7	2.5	1.2	8.9	0.8	2.8	2	1	0	2	2	2	0	ThiF	family
3HCDH_N	PF02737.13	gi|379003387|ref|YP_005259059.1|	-	0.046	13.3	0.3	0.16	11.5	0.3	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|379003387|ref|YP_005259059.1|	-	0.058	13.3	1.1	3.6	7.6	0.1	2.7	2	0	0	2	2	2	0	TrkA-N	domain
POR	PF01558.13	gi|379003388|ref|YP_005259060.1|	-	3.3e-32	111.7	0.6	4.5e-32	111.3	0.4	1.2	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.22	gi|379003389|ref|YP_005259061.1|	-	4.2e-15	54.6	15.9	1.8e-08	33.5	4.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003389|ref|YP_005259061.1|	-	1.1e-11	44.3	8.1	1.4e-11	44.0	5.6	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379003389|ref|YP_005259061.1|	-	1.6e-11	43.5	12.8	5.7e-07	29.1	3.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379003389|ref|YP_005259061.1|	-	2.5e-11	43.1	20.5	3.1e-08	33.2	7.2	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003389|ref|YP_005259061.1|	-	4.1e-11	43.0	9.6	6e-11	42.5	6.7	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379003389|ref|YP_005259061.1|	-	4.7e-10	38.7	12.5	7.3e-05	22.4	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379003389|ref|YP_005259061.1|	-	2.4e-09	37.3	9.9	3.1e-09	36.9	6.8	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379003389|ref|YP_005259061.1|	-	1.2e-08	35.5	9.0	6.1e-05	23.6	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|379003389|ref|YP_005259061.1|	-	2.6e-07	30.4	10.1	0.0019	18.3	0.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379003389|ref|YP_005259061.1|	-	3.5e-07	30.4	4.8	0.002	18.4	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003389|ref|YP_005259061.1|	-	7e-06	25.9	9.0	3.8e-05	23.6	6.3	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379003389|ref|YP_005259061.1|	-	1.5e-05	25.2	8.5	0.00062	20.1	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|379003389|ref|YP_005259061.1|	-	5.1e-05	23.6	11.9	0.024	15.0	0.5	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003389|ref|YP_005259061.1|	-	6.8e-05	23.3	11.6	0.073	13.6	0.4	2.7	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|379003389|ref|YP_005259061.1|	-	0.013	15.9	6.9	0.013	15.9	4.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
POR_N	PF01855.14	gi|379003390|ref|YP_005259062.1|	-	7.2e-68	228.5	0.8	9.6e-68	228.1	0.5	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|379003390|ref|YP_005259062.1|	-	3.9e-05	23.5	0.0	9.1e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_C	PF02775.16	gi|379003391|ref|YP_005259063.1|	-	8.3e-23	80.6	0.3	1.4e-22	79.8	0.2	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|379003391|ref|YP_005259063.1|	-	0.0011	17.9	0.0	0.0015	17.5	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
E1_dh	PF00676.15	gi|379003391|ref|YP_005259063.1|	-	0.13	11.0	2.5	0.07	11.8	0.4	1.5	2	0	0	2	2	2	0	Dehydrogenase	E1	component
LpxK	PF02606.9	gi|379003391|ref|YP_005259063.1|	-	0.14	11.0	0.0	0.18	10.7	0.0	1.1	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Cpn60_TCP1	PF00118.19	gi|379003392|ref|YP_005259064.1|	-	2.1e-169	564.2	2.2	2.4e-169	564.0	1.5	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
SHOCT	PF09851.4	gi|379003392|ref|YP_005259064.1|	-	0.0095	15.3	0.0	0.034	13.6	0.0	2.0	1	0	0	1	1	1	1	Short	C-terminal	domain
RNA_pol_Rpb6	PF01192.17	gi|379003393|ref|YP_005259065.1|	-	2.5e-16	59.1	0.0	5.2e-16	58.1	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
DSRB	PF10781.4	gi|379003393|ref|YP_005259065.1|	-	0.087	12.3	0.0	0.14	11.6	0.0	1.3	1	0	0	1	1	1	0	Dextransucrase	DSRB
ABC_tran	PF00005.22	gi|379003395|ref|YP_005259067.1|	-	9.3e-28	97.2	0.0	1.2e-27	96.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003395|ref|YP_005259067.1|	-	1.4e-10	41.6	0.2	0.00016	21.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|379003395|ref|YP_005259067.1|	-	5.6e-05	22.7	0.1	0.0015	18.0	0.1	2.0	1	1	1	2	2	2	1	AAA-like	domain
AAA_29	PF13555.1	gi|379003395|ref|YP_005259067.1|	-	0.00017	21.0	0.0	0.00038	19.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|379003395|ref|YP_005259067.1|	-	0.0002	20.5	0.1	0.00037	19.7	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|379003395|ref|YP_005259067.1|	-	0.00031	20.0	0.2	0.0038	16.4	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379003395|ref|YP_005259067.1|	-	0.00063	20.1	0.0	0.0011	19.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|379003395|ref|YP_005259067.1|	-	0.0013	18.1	0.1	0.015	14.6	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379003395|ref|YP_005259067.1|	-	0.0021	18.1	0.1	0.018	15.2	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003395|ref|YP_005259067.1|	-	0.0039	17.1	0.2	0.027	14.4	0.1	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
T2SE	PF00437.15	gi|379003395|ref|YP_005259067.1|	-	0.012	14.5	0.0	0.018	13.9	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|379003395|ref|YP_005259067.1|	-	0.014	15.1	1.2	0.3	10.8	0.1	2.6	3	0	0	3	3	2	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|379003395|ref|YP_005259067.1|	-	0.026	14.1	0.1	0.056	13.0	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379003395|ref|YP_005259067.1|	-	0.028	14.3	0.0	0.046	13.6	0.0	1.6	2	0	0	2	2	1	0	50S	ribosome-binding	GTPase
UPF0079	PF02367.12	gi|379003395|ref|YP_005259067.1|	-	0.032	13.8	0.1	0.056	13.0	0.1	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|379003395|ref|YP_005259067.1|	-	0.034	13.8	0.0	0.061	13.0	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
ABC_ATPase	PF09818.4	gi|379003395|ref|YP_005259067.1|	-	0.037	12.6	0.1	1.6	7.2	0.0	2.2	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
Dynamin_N	PF00350.18	gi|379003395|ref|YP_005259067.1|	-	0.038	13.8	0.0	0.044	13.6	0.0	1.3	1	0	0	1	1	1	0	Dynamin	family
Miro	PF08477.8	gi|379003395|ref|YP_005259067.1|	-	0.038	14.4	0.0	0.083	13.3	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
AAA_33	PF13671.1	gi|379003395|ref|YP_005259067.1|	-	0.039	13.8	0.1	0.066	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|379003395|ref|YP_005259067.1|	-	0.055	13.3	0.0	0.25	11.2	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|379003395|ref|YP_005259067.1|	-	0.06	12.7	0.1	0.11	11.9	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NACHT	PF05729.7	gi|379003395|ref|YP_005259067.1|	-	0.072	12.7	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|379003395|ref|YP_005259067.1|	-	0.082	13.1	0.0	0.16	12.1	0.0	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Guanylate_kin	PF00625.16	gi|379003395|ref|YP_005259067.1|	-	0.11	11.9	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Guanylate	kinase
AIG1	PF04548.11	gi|379003395|ref|YP_005259067.1|	-	0.12	11.4	0.0	0.2	10.7	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
AAA_15	PF13175.1	gi|379003395|ref|YP_005259067.1|	-	0.13	11.3	0.0	1.1	8.2	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|379003395|ref|YP_005259067.1|	-	0.14	12.0	0.1	3.7	7.5	0.1	2.3	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Zeta_toxin	PF06414.7	gi|379003395|ref|YP_005259067.1|	-	0.16	11.0	0.0	0.26	10.3	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
MutS_V	PF00488.16	gi|379003395|ref|YP_005259067.1|	-	0.17	11.2	0.0	0.26	10.6	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
Peripla_BP_6	PF13458.1	gi|379003396|ref|YP_005259068.1|	-	5.1e-43	147.7	0.9	6.2e-43	147.4	0.7	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|379003396|ref|YP_005259068.1|	-	1.7e-39	135.5	0.0	2e-39	135.3	0.0	1.1	1	0	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|379003396|ref|YP_005259068.1|	-	8.2e-12	44.5	0.0	6.1e-11	41.6	0.0	1.9	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ODV-E18	PF10717.4	gi|379003396|ref|YP_005259068.1|	-	0.054	12.9	0.1	0.096	12.1	0.1	1.4	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	ODV-E18
HEPN	PF05168.9	gi|379003397|ref|YP_005259069.1|	-	5.6e-15	55.2	0.3	5.7e-15	55.2	0.2	1.1	1	0	0	1	1	1	1	HEPN	domain
ClpB_D2-small	PF10431.4	gi|379003397|ref|YP_005259069.1|	-	0.12	12.3	0.1	0.16	11.8	0.1	1.4	1	1	0	1	1	1	0	C-terminal,	D2-small	domain,	of	ClpB	protein
Sugar_tr	PF00083.19	gi|379003399|ref|YP_005259071.1|	-	0.84	8.1	3.7	1	7.8	2.5	1.1	1	0	0	1	1	1	0	Sugar	(and	other)	transporter
COX15-CtaA	PF02628.10	gi|379003400|ref|YP_005259072.1|	-	0.0068	15.3	1.8	0.0084	15.0	1.3	1.1	1	0	0	1	1	1	1	Cytochrome	oxidase	assembly	protein
YesK	PF14150.1	gi|379003400|ref|YP_005259072.1|	-	0.064	13.3	1.7	0.16	12.0	1.1	1.7	1	1	0	1	1	1	0	YesK-like	protein
Abi	PF02517.11	gi|379003401|ref|YP_005259073.1|	-	2.9e-13	49.7	7.8	2.9e-13	49.7	5.4	2.1	3	0	0	3	3	3	1	CAAX	protease	self-immunity
NERD	PF08378.6	gi|379003402|ref|YP_005259074.1|	-	0.0096	16.1	0.4	0.0096	16.1	0.3	2.4	1	1	1	2	2	2	1	Nuclease-related	domain
IncA	PF04156.9	gi|379003402|ref|YP_005259074.1|	-	0.028	14.0	2.4	0.044	13.3	1.6	1.2	1	0	0	1	1	1	0	IncA	protein
DUF2333	PF10095.4	gi|379003402|ref|YP_005259074.1|	-	0.04	12.5	4.5	0.052	12.1	3.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2333)
V_ATPase_I	PF01496.14	gi|379003402|ref|YP_005259074.1|	-	0.41	8.4	2.9	0.57	7.9	2.0	1.2	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Muted	PF14942.1	gi|379003402|ref|YP_005259074.1|	-	0.85	9.4	8.2	1.1	9.1	4.7	1.8	1	1	1	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Bul1_C	PF04426.7	gi|379003402|ref|YP_005259074.1|	-	0.99	8.5	3.8	1.3	8.1	0.4	2.1	1	1	1	2	2	2	0	Bul1	C	terminus
CENP-F_leu_zip	PF10473.4	gi|379003402|ref|YP_005259074.1|	-	1.3	8.9	7.4	2.2	8.1	0.3	2.4	2	1	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.2	gi|379003402|ref|YP_005259074.1|	-	5.2	6.9	12.7	5.3	6.8	3.0	2.4	1	1	0	2	2	2	0	Tropomyosin	like
PyrI	PF01948.13	gi|379003403|ref|YP_005259075.1|	-	6.7e-38	128.6	0.8	8e-38	128.3	0.5	1.1	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|379003403|ref|YP_005259075.1|	-	1.5e-16	59.5	0.1	2.9e-16	58.6	0.1	1.4	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
Pribosyltran	PF00156.22	gi|379003404|ref|YP_005259076.1|	-	7.5e-15	54.7	1.6	1.9e-14	53.4	1.1	1.7	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|379003404|ref|YP_005259076.1|	-	0.0068	15.6	0.0	0.0086	15.3	0.0	1.2	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|379003404|ref|YP_005259076.1|	-	0.036	13.3	0.0	0.044	13.0	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
DHO_dh	PF01180.16	gi|379003405|ref|YP_005259077.1|	-	2.1e-24	85.9	0.0	4.4e-23	81.6	0.0	2.0	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
Glyco_hydro_42M	PF08532.5	gi|379003405|ref|YP_005259077.1|	-	0.14	11.2	0.0	0.21	10.7	0.0	1.1	1	0	0	1	1	1	0	Beta-galactosidase	trimerisation	domain
Mut7-C	PF01927.11	gi|379003406|ref|YP_005259078.1|	-	6.3e-22	78.1	0.4	7.5e-22	77.8	0.2	1.1	1	0	0	1	1	1	1	Mut7-C	RNAse	domain
DUF1644	PF07800.7	gi|379003406|ref|YP_005259078.1|	-	0.0084	15.9	0.7	0.0093	15.8	0.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1644)
zf-C2H2_3	PF13878.1	gi|379003406|ref|YP_005259078.1|	-	0.22	11.1	2.2	3.2	7.3	0.0	3.0	3	0	0	3	3	3	0	zinc-finger	of	acetyl-transferase	ESCO
Rad50_zn_hook	PF04423.9	gi|379003406|ref|YP_005259078.1|	-	0.48	9.9	2.1	1.1	8.7	1.5	1.5	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
Zn_Tnp_IS1595	PF12760.2	gi|379003406|ref|YP_005259078.1|	-	3.9	7.3	9.8	88	3.0	6.8	2.4	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
DUF2521	PF10730.4	gi|379003407|ref|YP_005259079.1|	-	0.016	15.0	0.0	0.028	14.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2521)
FbpA	PF05833.6	gi|379003409|ref|YP_005259081.1|	-	4.5e-32	111.1	0.0	9.8e-32	110.0	0.0	1.5	1	1	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|379003409|ref|YP_005259081.1|	-	8.7e-21	73.6	0.0	1.7e-20	72.7	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
DUF4391	PF14335.1	gi|379003409|ref|YP_005259081.1|	-	0.007	15.7	0.7	0.72	9.1	0.0	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4391)
TMF_DNA_bd	PF12329.3	gi|379003409|ref|YP_005259081.1|	-	0.019	14.7	18.9	0.035	13.8	7.5	2.6	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
V_ATPase_I	PF01496.14	gi|379003409|ref|YP_005259081.1|	-	0.022	12.6	7.8	0.0048	14.8	1.8	1.8	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
COG5	PF10392.4	gi|379003409|ref|YP_005259081.1|	-	0.037	13.9	2.2	4.7	7.1	0.1	2.4	2	0	0	2	2	2	0	Golgi	transport	complex	subunit	5
LURAP	PF14854.1	gi|379003409|ref|YP_005259081.1|	-	0.045	13.4	0.3	0.045	13.4	0.2	1.8	2	0	0	2	2	1	0	Leucine	rich	adaptor	protein
DUF972	PF06156.8	gi|379003409|ref|YP_005259081.1|	-	0.054	13.8	4.6	1.2	9.4	1.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF3441	PF11923.3	gi|379003409|ref|YP_005259081.1|	-	0.063	12.8	0.2	0.26	10.8	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3441)
DUF4140	PF13600.1	gi|379003409|ref|YP_005259081.1|	-	0.12	12.8	9.8	0.47	10.9	2.0	2.7	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Nsp1_C	PF05064.8	gi|379003409|ref|YP_005259081.1|	-	0.2	11.3	5.2	0.69	9.5	1.1	2.2	2	0	0	2	2	2	0	Nsp1-like	C-terminal	region
Spc24	PF08286.6	gi|379003409|ref|YP_005259081.1|	-	0.34	10.6	5.9	1.5	8.5	1.5	2.3	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
Tektin	PF03148.9	gi|379003409|ref|YP_005259081.1|	-	0.41	9.1	10.5	1.2	7.5	0.2	2.1	2	0	0	2	2	2	0	Tektin	family
ApoLp-III	PF07464.6	gi|379003409|ref|YP_005259081.1|	-	0.42	10.6	9.5	0.61	10.0	0.4	2.8	3	0	0	3	3	3	0	Apolipophorin-III	precursor	(apoLp-III)
Herpes_UL6	PF01763.11	gi|379003409|ref|YP_005259081.1|	-	0.44	8.6	3.1	0.28	9.3	0.1	1.8	2	0	0	2	2	2	0	Herpesvirus	UL6	like
APG6	PF04111.7	gi|379003409|ref|YP_005259081.1|	-	0.51	9.3	9.6	3.2	6.6	3.0	2.1	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF724	PF05266.9	gi|379003409|ref|YP_005259081.1|	-	0.56	9.8	11.6	1.1	8.7	0.4	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF724)
Striatin	PF08232.7	gi|379003409|ref|YP_005259081.1|	-	0.66	10.2	7.7	0.19	12.0	1.2	2.1	2	0	0	2	2	2	0	Striatin	family
CDC37_N	PF03234.9	gi|379003409|ref|YP_005259081.1|	-	0.7	10.1	4.0	1.3	9.3	2.8	1.4	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF2951	PF11166.3	gi|379003409|ref|YP_005259081.1|	-	0.76	9.6	3.3	1.6	8.6	0.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2951)
Med4	PF10018.4	gi|379003409|ref|YP_005259081.1|	-	0.78	9.1	8.2	1.2	8.5	1.9	2.2	2	0	0	2	2	2	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
ATG16	PF08614.6	gi|379003409|ref|YP_005259081.1|	-	0.98	9.2	13.0	10	5.8	8.5	2.3	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
Prefoldin	PF02996.12	gi|379003409|ref|YP_005259081.1|	-	1.2	8.7	11.4	1.1	8.8	1.2	2.5	2	0	0	2	2	2	0	Prefoldin	subunit
Tropomyosin_1	PF12718.2	gi|379003409|ref|YP_005259081.1|	-	1.3	8.8	15.8	0.59	9.9	5.7	2.2	2	0	0	2	2	2	0	Tropomyosin	like
Prefoldin_2	PF01920.15	gi|379003409|ref|YP_005259081.1|	-	1.3	8.8	15.7	2.9	7.7	0.4	2.4	2	0	0	2	2	2	0	Prefoldin	subunit
Snf7	PF03357.16	gi|379003409|ref|YP_005259081.1|	-	1.5	8.2	16.4	0.8	9.0	1.1	2.2	2	0	0	2	2	2	0	Snf7
CASP_C	PF08172.7	gi|379003409|ref|YP_005259081.1|	-	1.5	7.8	8.6	2.5	7.0	1.6	2.2	2	0	0	2	2	2	0	CASP	C	terminal
Seryl_tRNA_N	PF02403.17	gi|379003409|ref|YP_005259081.1|	-	1.6	8.8	9.8	21	5.1	0.1	2.7	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Fzo_mitofusin	PF04799.8	gi|379003409|ref|YP_005259081.1|	-	2.1	7.6	4.2	12	5.2	0.1	2.2	2	0	0	2	2	2	0	fzo-like	conserved	region
Paralemmin	PF03285.10	gi|379003409|ref|YP_005259081.1|	-	2.2	7.7	6.3	0.33	10.3	0.9	1.9	2	0	0	2	2	2	0	Paralemmin
AAA_13	PF13166.1	gi|379003409|ref|YP_005259081.1|	-	2.2	6.6	10.8	11	4.3	7.5	1.7	1	1	0	1	1	1	0	AAA	domain
DivIVA	PF05103.8	gi|379003409|ref|YP_005259081.1|	-	2.3	8.2	11.4	10	6.1	0.4	2.5	2	0	0	2	2	2	0	DivIVA	protein
DUF607	PF04678.8	gi|379003409|ref|YP_005259081.1|	-	2.4	8.0	9.6	1.2	9.0	2.2	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF607
DUF883	PF05957.8	gi|379003409|ref|YP_005259081.1|	-	2.5	8.5	11.0	1.5	9.2	1.7	2.8	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
BLOC1_2	PF10046.4	gi|379003409|ref|YP_005259081.1|	-	2.9	8.0	7.3	18	5.5	1.1	2.5	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Ax_dynein_light	PF10211.4	gi|379003409|ref|YP_005259081.1|	-	4.8	6.9	9.8	13	5.6	0.2	2.2	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
MutS_IV	PF05190.13	gi|379003409|ref|YP_005259081.1|	-	4.9	7.3	7.9	1.3	9.2	0.1	2.7	2	1	0	2	2	2	0	MutS	family	domain	IV
Laminin_I	PF06008.9	gi|379003409|ref|YP_005259081.1|	-	5.1	6.3	11.1	17	4.6	7.7	1.7	1	1	0	1	1	1	0	Laminin	Domain	I
Sec2p	PF06428.6	gi|379003409|ref|YP_005259081.1|	-	6.8	6.6	12.9	1.2	8.9	0.8	2.6	2	0	0	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
DUF4200	PF13863.1	gi|379003409|ref|YP_005259081.1|	-	8.9	6.2	18.9	2.7	7.9	1.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
AP_endonuc_2	PF01261.19	gi|379003410|ref|YP_005259082.1|	-	5.7e-20	71.5	0.1	8.4e-20	70.9	0.0	1.2	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
ComA	PF02679.10	gi|379003410|ref|YP_005259082.1|	-	0.04	12.9	0.1	0.054	12.5	0.0	1.2	1	0	0	1	1	1	0	(2R)-phospho-3-sulfolactate	synthase	(ComA)
UvdE	PF03851.9	gi|379003410|ref|YP_005259082.1|	-	0.058	12.4	0.0	0.095	11.7	0.0	1.3	1	0	0	1	1	1	0	UV-endonuclease	UvdE
Peptidase_C30	PF05409.8	gi|379003412|ref|YP_005259084.1|	-	0.061	12.3	0.1	0.071	12.1	0.1	1.0	1	0	0	1	1	1	0	Coronavirus	endopeptidase	C30
Flavi_NS1	PF00948.16	gi|379003412|ref|YP_005259084.1|	-	0.084	11.2	0.1	0.1	11.0	0.1	1.0	1	0	0	1	1	1	0	Flavivirus	non-structural	Protein	NS1
TruD	PF01142.13	gi|379003416|ref|YP_005259088.1|	-	1.2e-72	244.7	0.0	1.8e-72	244.0	0.0	1.3	1	0	0	1	1	1	1	tRNA	pseudouridine	synthase	D	(TruD)
DUF362	PF04015.7	gi|379003417|ref|YP_005259089.1|	-	3.1e-08	33.3	0.0	4.9e-07	29.4	0.0	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF362)
Ribosomal_L14	PF00238.14	gi|379003418|ref|YP_005259090.1|	-	2.4e-35	120.9	0.0	2.7e-35	120.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
Ribosomal_L19	PF01245.15	gi|379003418|ref|YP_005259090.1|	-	0.074	12.8	0.2	0.12	12.1	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L19
DUF3826	PF12875.2	gi|379003419|ref|YP_005259091.1|	-	0.16	11.6	0.6	1.9	8.1	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3826)
AdoHcyase	PF05221.12	gi|379003421|ref|YP_005259093.1|	-	7.6e-63	211.9	0.0	9.4e-63	211.6	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|379003421|ref|YP_005259093.1|	-	2.7e-51	173.6	0.1	4.9e-51	172.8	0.1	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|379003421|ref|YP_005259093.1|	-	4.5e-07	29.1	0.1	1e-06	27.9	0.0	1.6	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|379003421|ref|YP_005259093.1|	-	8.4e-05	21.9	0.9	0.00017	21.0	0.2	1.9	2	0	0	2	2	2	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
TrkA_N	PF02254.13	gi|379003421|ref|YP_005259093.1|	-	0.0015	18.4	0.1	0.015	15.3	0.1	2.3	2	0	0	2	2	2	1	TrkA-N	domain
Shikimate_DH	PF01488.15	gi|379003421|ref|YP_005259093.1|	-	0.12	12.4	0.4	1.7	8.7	0.2	2.3	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
KaiC	PF06745.8	gi|379003422|ref|YP_005259094.1|	-	1.2e-84	282.9	0.0	1.5e-84	282.6	0.0	1.1	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379003422|ref|YP_005259094.1|	-	7.7e-10	38.4	0.0	1.3e-09	37.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF2075	PF09848.4	gi|379003422|ref|YP_005259094.1|	-	0.0024	16.9	0.2	0.011	14.7	0.1	1.8	1	1	1	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_16	PF13191.1	gi|379003422|ref|YP_005259094.1|	-	0.0053	16.7	0.1	0.013	15.4	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|379003422|ref|YP_005259094.1|	-	0.0065	16.1	0.1	0.019	14.7	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|379003422|ref|YP_005259094.1|	-	0.014	15.4	0.2	0.041	14.0	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
GvpD	PF07088.6	gi|379003422|ref|YP_005259094.1|	-	0.02	13.2	0.0	0.028	12.7	0.0	1.2	1	0	0	1	1	1	0	GvpD	gas	vesicle	protein
AAA_14	PF13173.1	gi|379003422|ref|YP_005259094.1|	-	0.02	14.7	0.0	0.046	13.6	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|379003422|ref|YP_005259094.1|	-	0.026	14.8	0.0	0.1	12.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|379003422|ref|YP_005259094.1|	-	0.052	12.9	0.0	0.096	12.1	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA	PF00004.24	gi|379003422|ref|YP_005259094.1|	-	0.08	13.1	0.8	0.14	12.3	0.3	1.8	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SE	PF00437.15	gi|379003422|ref|YP_005259094.1|	-	0.089	11.6	0.0	0.18	10.7	0.0	1.5	1	1	0	1	1	1	0	Type	II/IV	secretion	system	protein
TrwB_AAD_bind	PF10412.4	gi|379003422|ref|YP_005259094.1|	-	0.11	11.0	0.0	0.19	10.3	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_17	PF13207.1	gi|379003422|ref|YP_005259094.1|	-	0.29	11.9	1.4	0.97	10.2	1.0	2.3	1	1	0	1	1	1	0	AAA	domain
Uds1	PF15456.1	gi|379003422|ref|YP_005259094.1|	-	0.45	10.5	2.3	0.69	9.9	0.1	2.3	3	0	0	3	3	3	0	Up-regulated	During	Septation
HTH_23	PF13384.1	gi|379003423|ref|YP_005259095.1|	-	5.5e-06	25.8	0.1	1.4e-05	24.5	0.0	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
Val_tRNA-synt_C	PF10458.4	gi|379003423|ref|YP_005259095.1|	-	1.8e-05	24.6	3.8	1.8e-05	24.6	2.6	1.5	2	0	0	2	2	1	1	Valyl	tRNA	synthetase	tRNA	binding	arm
Sigma70_r4_2	PF08281.7	gi|379003423|ref|YP_005259095.1|	-	3.6e-05	23.1	0.1	0.00019	20.7	0.0	2.2	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_11	PF08279.7	gi|379003423|ref|YP_005259095.1|	-	9.7e-05	21.9	0.2	0.0005	19.6	0.0	2.3	2	1	1	3	3	3	1	HTH	domain
HTH_IclR	PF09339.5	gi|379003423|ref|YP_005259095.1|	-	0.00015	21.2	0.1	0.0003	20.3	0.1	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|379003423|ref|YP_005259095.1|	-	0.00018	21.2	0.0	0.00088	19.0	0.0	2.1	2	1	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|379003423|ref|YP_005259095.1|	-	0.0005	19.3	0.4	0.0087	15.3	0.0	2.7	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_38	PF13936.1	gi|379003423|ref|YP_005259095.1|	-	0.00096	18.6	0.1	0.0041	16.6	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|379003423|ref|YP_005259095.1|	-	0.00099	18.4	0.0	0.0065	15.8	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_7	PF02796.10	gi|379003423|ref|YP_005259095.1|	-	0.0011	18.7	0.0	0.0029	17.4	0.0	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain	of	resolvase
HTH_29	PF13551.1	gi|379003423|ref|YP_005259095.1|	-	0.0013	18.8	0.2	0.0027	17.8	0.1	1.6	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_5	PF01022.15	gi|379003423|ref|YP_005259095.1|	-	0.0017	17.9	0.0	0.0067	16.0	0.0	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|379003423|ref|YP_005259095.1|	-	0.0022	17.4	0.0	0.004	16.6	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|379003423|ref|YP_005259095.1|	-	0.0029	17.1	0.3	0.007	15.8	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
GerE	PF00196.14	gi|379003423|ref|YP_005259095.1|	-	0.0045	16.2	0.0	0.0098	15.1	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_40	PF14493.1	gi|379003423|ref|YP_005259095.1|	-	0.0079	16.3	0.6	0.02	15.0	0.1	1.9	2	1	0	2	2	1	1	Helix-turn-helix	domain
Sigma70_r3	PF04539.11	gi|379003423|ref|YP_005259095.1|	-	0.0088	15.9	3.4	0.66	9.8	0.7	2.4	1	1	1	2	2	2	1	Sigma-70	region	3
HTH_28	PF13518.1	gi|379003423|ref|YP_005259095.1|	-	0.011	15.7	0.0	0.025	14.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|379003423|ref|YP_005259095.1|	-	0.019	14.5	0.5	0.069	12.8	0.1	2.1	2	1	0	2	2	2	0	MarR	family
HTH_22	PF13309.1	gi|379003423|ref|YP_005259095.1|	-	0.022	14.5	0.1	0.21	11.3	0.0	2.4	3	0	0	3	3	3	0	HTH	domain
TetR_N	PF00440.18	gi|379003423|ref|YP_005259095.1|	-	0.025	14.2	0.1	0.061	12.9	0.1	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_10	PF04967.7	gi|379003423|ref|YP_005259095.1|	-	0.035	13.6	0.0	0.11	12.1	0.0	1.8	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_31	PF13560.1	gi|379003423|ref|YP_005259095.1|	-	0.039	14.1	0.6	0.039	14.1	0.4	2.0	3	0	0	3	3	1	0	Helix-turn-helix	domain
Med9	PF07544.8	gi|379003423|ref|YP_005259095.1|	-	0.044	13.5	0.1	0.077	12.7	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Fe_dep_repress	PF01325.14	gi|379003423|ref|YP_005259095.1|	-	0.06	13.2	0.1	0.17	11.8	0.0	1.8	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|379003423|ref|YP_005259095.1|	-	0.074	12.2	0.0	0.18	10.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
LacI	PF00356.16	gi|379003423|ref|YP_005259095.1|	-	0.088	12.4	1.3	0.2	11.3	0.1	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
YicC_N	PF03755.8	gi|379003423|ref|YP_005259095.1|	-	0.094	12.6	0.2	0.13	12.2	0.1	1.2	1	0	0	1	1	1	0	YicC-like	family,	N-terminal	region
GntR	PF00392.16	gi|379003423|ref|YP_005259095.1|	-	0.1	12.0	0.9	1.1	8.7	0.2	2.8	2	1	1	3	3	3	0	Bacterial	regulatory	proteins,	gntR	family
HTH_3	PF01381.17	gi|379003423|ref|YP_005259095.1|	-	0.12	12.2	0.0	0.12	12.2	0.0	2.0	3	0	0	3	3	2	0	Helix-turn-helix
B3_4	PF03483.12	gi|379003424|ref|YP_005259096.1|	-	1e-24	86.9	0.0	1.5e-24	86.3	0.0	1.2	1	0	0	1	1	1	1	B3/4	domain
MobB	PF03205.9	gi|379003425|ref|YP_005259097.1|	-	3.1e-05	23.7	0.1	0.00055	19.6	0.1	2.5	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CbiA	PF01656.18	gi|379003425|ref|YP_005259097.1|	-	0.0012	18.2	2.0	0.0061	15.9	0.3	2.5	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|379003425|ref|YP_005259097.1|	-	0.0043	17.8	0.0	0.015	16.1	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
PTS_IIB	PF02302.12	gi|379003425|ref|YP_005259097.1|	-	0.013	16.0	0.2	4.7	7.7	0.0	3.2	3	0	0	3	3	3	0	PTS	system,	Lactose/Cellobiose	specific	IIB	subunit
Zeta_toxin	PF06414.7	gi|379003425|ref|YP_005259097.1|	-	0.014	14.5	0.0	0.026	13.6	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
HTH_38	PF13936.1	gi|379003425|ref|YP_005259097.1|	-	0.032	13.7	0.5	8.8	5.9	0.1	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
AAA_18	PF13238.1	gi|379003425|ref|YP_005259097.1|	-	0.039	14.2	0.0	0.065	13.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
PPK2	PF03976.9	gi|379003425|ref|YP_005259097.1|	-	0.09	12.0	0.0	0.18	11.0	0.0	1.4	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
Thymidylate_kin	PF02223.12	gi|379003425|ref|YP_005259097.1|	-	0.11	11.9	0.0	0.18	11.1	0.0	1.3	1	0	0	1	1	1	0	Thymidylate	kinase
Metallophos_2	PF12850.2	gi|379003426|ref|YP_005259098.1|	-	8.8e-06	25.6	0.0	1.7e-05	24.6	0.0	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|379003426|ref|YP_005259098.1|	-	0.096	12.0	0.5	3.3	7.0	0.0	2.5	1	1	1	2	2	2	0	Calcineurin-like	phosphoesterase
Thioredoxin_2	PF13098.1	gi|379003428|ref|YP_005259100.1|	-	1.5e-13	50.9	0.0	1.9e-13	50.5	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_4	PF13462.1	gi|379003428|ref|YP_005259100.1|	-	3.5e-07	30.3	0.1	4e-06	26.9	0.1	2.0	1	1	0	2	2	2	1	Thioredoxin
DSBA	PF01323.15	gi|379003428|ref|YP_005259100.1|	-	4.9e-06	26.2	0.2	0.1	12.1	0.0	2.5	1	1	0	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin	PF00085.15	gi|379003428|ref|YP_005259100.1|	-	0.01	15.4	0.0	1.1	8.9	0.0	2.1	2	0	0	2	2	2	0	Thioredoxin
PPR	PF01535.15	gi|379003428|ref|YP_005259100.1|	-	0.071	13.1	0.6	4.8	7.3	0.0	3.2	3	0	0	3	3	3	0	PPR	repeat
AhpC-TSA	PF00578.16	gi|379003428|ref|YP_005259100.1|	-	0.12	12.0	0.2	0.29	10.8	0.1	1.6	1	1	0	1	1	1	0	AhpC/TSA	family
Cep57_MT_bd	PF06657.8	gi|379003429|ref|YP_005259101.1|	-	0.0092	15.9	0.6	0.022	14.7	0.4	1.6	1	0	0	1	1	1	1	Centrosome	microtubule-binding	domain	of	Cep57
Thioredoxin_3	PF13192.1	gi|379003429|ref|YP_005259101.1|	-	0.012	15.3	0.3	0.066	13.0	0.0	2.3	3	0	0	3	3	3	0	Thioredoxin	domain
Ribonuc_red_lgC	PF02867.10	gi|379003430|ref|YP_005259102.1|	-	2.2e-128	429.2	0.0	4.9e-76	256.4	0.0	2.2	2	0	0	2	2	2	2	Ribonucleotide	reductase,	barrel	domain
LAGLIDADG_3	PF14528.1	gi|379003430|ref|YP_005259102.1|	-	1.2e-28	99.1	2.4	6.5e-24	83.9	0.6	2.9	2	0	0	2	2	2	2	LAGLIDADG-like	domain
Intein_splicing	PF14890.1	gi|379003430|ref|YP_005259102.1|	-	1.2e-16	60.4	0.1	5.9e-16	58.2	0.1	2.2	1	1	0	1	1	1	1	Intein	splicing	domain
Ribonuc_red_lgN	PF00317.16	gi|379003430|ref|YP_005259102.1|	-	4.5e-13	48.8	0.1	8.7e-13	47.8	0.1	1.5	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.11	gi|379003430|ref|YP_005259102.1|	-	0.00077	19.8	0.0	0.0023	18.3	0.0	1.8	1	0	0	1	1	1	1	ATP	cone	domain
LAGLIDADG_WhiA	PF14527.1	gi|379003430|ref|YP_005259102.1|	-	0.0069	16.2	0.1	0.23	11.3	0.0	2.5	2	0	0	2	2	2	1	WhiA	LAGLIDADG-like	domain
7TMR-DISM_7TM	PF07695.6	gi|379003431|ref|YP_005259103.1|	-	1.2	8.7	12.5	1.6	8.3	8.0	1.6	1	1	1	2	2	2	0	7TM	diverse	intracellular	signalling
DUF4199	PF13858.1	gi|379003431|ref|YP_005259103.1|	-	5.8	6.8	9.7	1.2	9.0	4.2	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4199)
tRNA-synt_2b	PF00587.20	gi|379003433|ref|YP_005259105.1|	-	1.1e-32	112.9	0.0	1.8e-32	112.3	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|379003433|ref|YP_005259105.1|	-	1.2e-21	76.7	2.9	2.3e-21	75.8	2.0	1.4	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
Fmp27_WPPW	PF10359.4	gi|379003433|ref|YP_005259105.1|	-	0.0023	16.4	1.1	0.0033	15.9	0.8	1.1	1	0	0	1	1	1	1	RNA	pol	II	promoter	Fmp27	protein	domain
Syntaxin-6_N	PF09177.6	gi|379003433|ref|YP_005259105.1|	-	0.008	16.5	1.4	0.023	15.0	1.0	1.7	1	0	0	1	1	1	1	Syntaxin	6,	N-terminal
Cep57_MT_bd	PF06657.8	gi|379003433|ref|YP_005259105.1|	-	0.015	15.2	2.1	0.038	13.9	1.5	1.7	1	0	0	1	1	1	0	Centrosome	microtubule-binding	domain	of	Cep57
Mnd1	PF03962.10	gi|379003433|ref|YP_005259105.1|	-	0.016	14.8	1.1	0.027	14.1	0.8	1.3	1	0	0	1	1	1	0	Mnd1	family
APG6	PF04111.7	gi|379003433|ref|YP_005259105.1|	-	0.026	13.5	0.2	0.039	13.0	0.1	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DUF342	PF03961.8	gi|379003433|ref|YP_005259105.1|	-	0.031	12.7	0.2	0.05	12.0	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
OmpH	PF03938.9	gi|379003433|ref|YP_005259105.1|	-	0.041	13.8	0.1	0.088	12.7	0.1	1.5	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
IncA	PF04156.9	gi|379003433|ref|YP_005259105.1|	-	0.043	13.3	2.5	0.068	12.7	1.7	1.2	1	0	0	1	1	1	0	IncA	protein
GAS	PF13851.1	gi|379003433|ref|YP_005259105.1|	-	0.045	12.9	1.0	0.08	12.1	0.7	1.3	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
Atg14	PF10186.4	gi|379003433|ref|YP_005259105.1|	-	0.087	11.7	0.8	0.14	11.1	0.6	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
TBPIP	PF07106.8	gi|379003433|ref|YP_005259105.1|	-	0.2	11.1	0.8	0.39	10.2	0.5	1.4	1	0	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
TMF_TATA_bd	PF12325.3	gi|379003433|ref|YP_005259105.1|	-	0.28	10.9	3.7	0.6	9.8	2.5	1.5	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
V_ATPase_I	PF01496.14	gi|379003433|ref|YP_005259105.1|	-	0.34	8.7	0.9	0.48	8.2	0.6	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Prefoldin_2	PF01920.15	gi|379003433|ref|YP_005259105.1|	-	0.86	9.4	4.9	4.3	7.1	1.7	2.3	2	0	0	2	2	2	0	Prefoldin	subunit
CCDC-167	PF15188.1	gi|379003433|ref|YP_005259105.1|	-	1.9	8.4	8.2	5.4	7.0	5.7	1.7	1	1	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
AA_kinase	PF00696.23	gi|379003435|ref|YP_005259107.1|	-	3.4e-25	88.9	0.0	4.6e-25	88.5	0.0	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
HIT	PF01230.18	gi|379003436|ref|YP_005259108.1|	-	5.9e-24	84.4	0.0	7.4e-24	84.1	0.0	1.1	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|379003436|ref|YP_005259108.1|	-	5.8e-16	58.7	0.0	8.2e-16	58.2	0.0	1.2	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
Sigma70_r4_2	PF08281.7	gi|379003437|ref|YP_005259109.1|	-	4.2e-08	32.5	0.5	8e-08	31.6	0.3	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_23	PF13384.1	gi|379003437|ref|YP_005259109.1|	-	8.7e-08	31.5	0.2	1.9e-07	30.4	0.1	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_7	PF02796.10	gi|379003437|ref|YP_005259109.1|	-	4.9e-07	29.4	0.1	9.3e-07	28.6	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
GerE	PF00196.14	gi|379003437|ref|YP_005259109.1|	-	2.2e-06	26.8	0.1	3.6e-06	26.1	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_38	PF13936.1	gi|379003437|ref|YP_005259109.1|	-	3e-06	26.6	0.1	5.4e-06	25.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Terminase_5	PF06056.7	gi|379003437|ref|YP_005259109.1|	-	1.8e-05	24.1	0.0	3e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_28	PF13518.1	gi|379003437|ref|YP_005259109.1|	-	2.6e-05	24.1	0.1	4.7e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379003437|ref|YP_005259109.1|	-	0.00015	21.8	0.1	0.0019	18.3	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_40	PF14493.1	gi|379003437|ref|YP_005259109.1|	-	0.00016	21.7	0.0	0.00031	20.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.7	gi|379003437|ref|YP_005259109.1|	-	0.00092	18.7	0.9	0.0024	17.4	0.0	2.0	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|379003437|ref|YP_005259109.1|	-	0.0025	17.1	0.1	0.0073	15.6	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r3	PF04539.11	gi|379003437|ref|YP_005259109.1|	-	0.0042	16.9	0.4	0.07	13.0	0.2	2.4	2	0	0	2	2	2	1	Sigma-70	region	3
HTH_22	PF13309.1	gi|379003437|ref|YP_005259109.1|	-	0.0044	16.7	0.0	0.015	15.0	0.0	1.9	1	0	0	1	1	1	1	HTH	domain
HTH_11	PF08279.7	gi|379003437|ref|YP_005259109.1|	-	0.0054	16.3	0.2	0.027	14.0	0.0	2.2	2	1	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|379003437|ref|YP_005259109.1|	-	0.0056	16.3	0.1	0.012	15.2	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_17	PF12728.2	gi|379003437|ref|YP_005259109.1|	-	0.0063	16.7	0.0	0.012	15.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_30	PF13556.1	gi|379003437|ref|YP_005259109.1|	-	0.013	15.0	0.0	0.023	14.2	0.0	1.4	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|379003437|ref|YP_005259109.1|	-	0.014	15.3	0.1	0.03	14.2	0.0	1.5	1	0	0	1	1	1	0	Transposase
HTH_36	PF13730.1	gi|379003437|ref|YP_005259109.1|	-	0.017	15.1	0.1	0.042	13.9	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
SpoIIID	PF12116.3	gi|379003437|ref|YP_005259109.1|	-	0.019	14.9	0.4	2.5	8.0	0.0	2.4	2	0	0	2	2	2	0	Stage	III	sporulation	protein	D
DUF134	PF02001.11	gi|379003437|ref|YP_005259109.1|	-	0.022	14.6	0.1	0.066	13.1	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF134
HTH_20	PF12840.2	gi|379003437|ref|YP_005259109.1|	-	0.023	14.5	0.0	0.051	13.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
Sigma70_ECF	PF07638.6	gi|379003437|ref|YP_005259109.1|	-	0.028	14.0	0.2	0.049	13.3	0.1	1.3	1	0	0	1	1	1	0	ECF	sigma	factor
GntR	PF00392.16	gi|379003437|ref|YP_005259109.1|	-	0.04	13.3	0.0	0.097	12.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
RED_N	PF07808.8	gi|379003437|ref|YP_005259109.1|	-	0.043	13.0	0.0	0.048	12.8	0.0	1.2	1	0	0	1	1	1	0	RED-like	protein	N-terminal	region
Sigma70_r4	PF04545.11	gi|379003437|ref|YP_005259109.1|	-	0.058	12.7	0.2	0.13	11.5	0.1	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
IF2_N	PF04760.10	gi|379003437|ref|YP_005259109.1|	-	0.062	12.9	0.2	3.2	7.4	0.0	2.3	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_3	PF01381.17	gi|379003437|ref|YP_005259109.1|	-	0.062	13.1	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
HTH_26	PF13443.1	gi|379003437|ref|YP_005259109.1|	-	0.069	13.3	0.0	0.16	12.1	0.0	1.5	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
Pex14_N	PF04695.8	gi|379003437|ref|YP_005259109.1|	-	0.098	12.7	0.0	0.16	11.9	0.0	1.5	1	1	1	2	2	2	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
HTH_Tnp_IS1	PF12759.2	gi|379003437|ref|YP_005259109.1|	-	0.14	11.6	0.1	0.61	9.5	0.0	2.1	2	0	0	2	2	2	0	InsA	C-terminal	domain
MMR_HSR1_C	PF08438.5	gi|379003438|ref|YP_005259110.1|	-	1.7e-35	121.4	0.0	2.7e-35	120.9	0.0	1.3	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|379003438|ref|YP_005259110.1|	-	2.6e-17	62.8	0.0	4.8e-17	61.9	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|379003438|ref|YP_005259110.1|	-	6.3e-08	32.3	0.0	1.5e-07	31.1	0.0	1.6	1	0	0	1	1	1	1	TGS	domain
GTP_EFTU	PF00009.22	gi|379003438|ref|YP_005259110.1|	-	0.00035	20.0	0.0	0.15	11.4	0.0	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
FeoB_N	PF02421.13	gi|379003438|ref|YP_005259110.1|	-	0.0017	17.6	0.0	0.0089	15.3	0.0	2.1	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
CHIPS	PF11434.3	gi|379003439|ref|YP_005259111.1|	-	0.031	13.9	0.0	0.077	12.6	0.0	1.6	1	0	0	1	1	1	0	Chemotaxis-inhibiting	protein	CHIPS
CBS	PF00571.23	gi|379003440|ref|YP_005259112.1|	-	1e-72	239.6	19.2	1.8e-11	43.6	0.0	8.2	8	0	0	8	8	8	8	CBS	domain
Cache_3	PF14827.1	gi|379003440|ref|YP_005259112.1|	-	0.0059	16.4	3.9	8.2	6.3	0.0	5.0	5	0	0	5	5	5	1	Sensory	domain	of	two-component	sensor	kinase
IF3_N	PF05198.11	gi|379003440|ref|YP_005259112.1|	-	0.067	13.1	0.7	2.8	7.9	0.0	3.7	4	0	0	4	4	4	0	Translation	initiation	factor	IF-3,	N-terminal	domain
PRC	PF05239.11	gi|379003440|ref|YP_005259112.1|	-	4.3	7.2	10.6	28	4.6	0.1	4.1	4	0	0	4	4	4	0	PRC-barrel	domain
AAA	PF00004.24	gi|379003441|ref|YP_005259113.1|	-	1.2e-99	329.7	0.0	4.3e-50	169.3	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|379003441|ref|YP_005259113.1|	-	2.8e-32	110.4	0.4	2.9e-31	107.2	0.3	2.7	3	0	0	3	3	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|379003441|ref|YP_005259113.1|	-	7.7e-15	54.5	0.0	2.4e-07	30.0	0.0	2.8	2	1	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|379003441|ref|YP_005259113.1|	-	4.3e-14	52.8	0.0	1.3e-07	31.7	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.1	gi|379003441|ref|YP_005259113.1|	-	6e-14	52.2	0.1	3.8e-06	27.0	0.0	4.2	2	2	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|379003441|ref|YP_005259113.1|	-	1.4e-12	47.7	0.0	4.2e-06	26.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|379003441|ref|YP_005259113.1|	-	4e-12	46.0	0.4	1.7e-05	24.5	0.1	3.9	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|379003441|ref|YP_005259113.1|	-	4.7e-12	46.7	0.2	1e-05	26.3	0.0	3.3	3	0	0	3	3	2	2	AAA	domain
AAA_16	PF13191.1	gi|379003441|ref|YP_005259113.1|	-	1.7e-11	44.4	0.0	6.2e-06	26.3	0.0	3.3	2	1	1	3	3	3	2	AAA	ATPase	domain
CDC48_2	PF02933.12	gi|379003441|ref|YP_005259113.1|	-	8.1e-11	41.3	0.6	2e-10	40.1	0.4	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_14	PF13173.1	gi|379003441|ref|YP_005259113.1|	-	1.2e-10	41.3	0.0	1.8e-05	24.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|379003441|ref|YP_005259113.1|	-	1.3e-09	37.6	0.2	0.001	18.5	0.0	2.4	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
TIP49	PF06068.8	gi|379003441|ref|YP_005259113.1|	-	3.1e-09	36.0	0.1	0.00022	20.0	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
Zeta_toxin	PF06414.7	gi|379003441|ref|YP_005259113.1|	-	4.1e-09	35.8	0.0	0.00013	21.1	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_18	PF13238.1	gi|379003441|ref|YP_005259113.1|	-	1.2e-07	32.1	0.0	0.006	16.8	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.1	gi|379003441|ref|YP_005259113.1|	-	1.3e-07	31.7	0.0	0.00061	19.7	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|379003441|ref|YP_005259113.1|	-	5.5e-07	29.2	0.8	0.0013	18.4	0.0	3.2	2	0	0	2	2	2	1	Part	of	AAA	domain
Vps4_C	PF09336.5	gi|379003441|ref|YP_005259113.1|	-	1e-06	28.4	0.8	0.0048	16.7	0.0	3.8	3	0	0	3	3	3	1	Vps4	C	terminal	oligomerisation	domain
Mg_chelatase	PF01078.16	gi|379003441|ref|YP_005259113.1|	-	2.5e-06	26.7	0.6	0.022	13.9	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|379003441|ref|YP_005259113.1|	-	4.2e-06	26.3	0.1	0.074	12.5	0.0	3.5	2	2	0	2	2	2	2	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|379003441|ref|YP_005259113.1|	-	7.7e-06	26.0	0.0	0.2	11.8	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
Sigma54_activ_2	PF14532.1	gi|379003441|ref|YP_005259113.1|	-	3.8e-05	23.7	0.0	0.11	12.5	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|379003441|ref|YP_005259113.1|	-	4.2e-05	23.2	0.3	0.55	9.8	0.0	3.7	4	0	0	4	4	4	1	NACHT	domain
AAA_25	PF13481.1	gi|379003441|ref|YP_005259113.1|	-	4.9e-05	22.8	7.6	1.1	8.6	0.2	4.3	2	2	1	4	4	4	2	AAA	domain
AAA_3	PF07726.6	gi|379003441|ref|YP_005259113.1|	-	5.5e-05	22.7	0.1	0.7	9.4	0.0	3.3	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
KaiC	PF06745.8	gi|379003441|ref|YP_005259113.1|	-	0.0001	21.4	1.7	0.41	9.7	0.0	4.1	3	1	1	4	4	4	1	KaiC
Arch_ATPase	PF01637.13	gi|379003441|ref|YP_005259113.1|	-	0.00012	21.8	0.4	0.084	12.5	0.1	3.5	2	2	1	3	3	3	1	Archaeal	ATPase
AAA_24	PF13479.1	gi|379003441|ref|YP_005259113.1|	-	0.00016	21.3	0.1	0.74	9.3	0.1	2.6	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|379003441|ref|YP_005259113.1|	-	0.00023	21.4	0.0	0.33	11.2	0.0	2.6	2	0	0	2	2	2	1	ABC	transporter
DUF815	PF05673.8	gi|379003441|ref|YP_005259113.1|	-	0.0003	19.7	0.0	0.35	9.7	0.0	2.6	3	0	0	3	3	2	2	Protein	of	unknown	function	(DUF815)
NTPase_1	PF03266.10	gi|379003441|ref|YP_005259113.1|	-	0.00041	20.1	2.0	2.1	8.0	0.0	4.3	4	1	1	5	5	3	1	NTPase
Antitoxin-MazE	PF04014.13	gi|379003441|ref|YP_005259113.1|	-	0.0005	19.7	0.6	0.0058	16.3	0.2	2.7	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
PhoH	PF02562.11	gi|379003441|ref|YP_005259113.1|	-	0.00055	19.2	2.0	0.11	11.6	0.0	3.2	4	0	0	4	4	2	1	PhoH-like	protein
NB-ARC	PF00931.17	gi|379003441|ref|YP_005259113.1|	-	0.0012	17.7	0.3	1.2	7.8	0.0	3.5	4	0	0	4	4	4	1	NB-ARC	domain
ATP-synt_ab	PF00006.20	gi|379003441|ref|YP_005259113.1|	-	0.0019	17.7	0.0	2.5	7.5	0.0	2.5	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
SKI	PF01202.17	gi|379003441|ref|YP_005259113.1|	-	0.004	17.0	0.1	2.8	7.7	0.0	2.8	3	0	0	3	3	2	1	Shikimate	kinase
UPF0079	PF02367.12	gi|379003441|ref|YP_005259113.1|	-	0.0069	16.0	0.0	3.4	7.3	0.0	2.5	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
T2SE	PF00437.15	gi|379003441|ref|YP_005259113.1|	-	0.0085	15.0	0.0	0.32	9.8	0.0	2.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
Guanylate_kin	PF00625.16	gi|379003441|ref|YP_005259113.1|	-	0.0092	15.4	0.1	17	4.7	0.0	3.9	3	1	1	4	4	4	0	Guanylate	kinase
ResIII	PF04851.10	gi|379003441|ref|YP_005259113.1|	-	0.01	15.6	0.0	0.94	9.2	0.0	2.3	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Viral_helicase1	PF01443.13	gi|379003441|ref|YP_005259113.1|	-	0.016	14.7	0.0	0.61	9.5	0.0	2.2	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Bac_DnaA	PF00308.13	gi|379003441|ref|YP_005259113.1|	-	0.021	14.5	0.0	2.3	7.8	0.0	3.2	4	0	0	4	4	3	0	Bacterial	dnaA	protein
AAA_29	PF13555.1	gi|379003441|ref|YP_005259113.1|	-	0.039	13.4	0.0	11	5.5	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|379003441|ref|YP_005259113.1|	-	0.049	13.2	0.2	1.6	8.2	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|379003441|ref|YP_005259113.1|	-	0.052	13.0	0.0	0.97	8.9	0.0	2.4	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Parvo_NS1	PF01057.12	gi|379003441|ref|YP_005259113.1|	-	0.054	12.3	0.1	0.88	8.3	0.0	2.1	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
AAA_10	PF12846.2	gi|379003441|ref|YP_005259113.1|	-	0.057	12.8	1.4	11	5.3	0.0	3.0	2	1	1	3	3	3	0	AAA-like	domain
AFG1_ATPase	PF03969.11	gi|379003441|ref|YP_005259113.1|	-	0.058	12.1	0.0	7.3	5.2	0.0	2.7	3	1	0	3	3	2	0	AFG1-like	ATPase
KTI12	PF08433.5	gi|379003441|ref|YP_005259113.1|	-	0.067	12.3	0.0	11	5.0	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_11	PF13086.1	gi|379003441|ref|YP_005259113.1|	-	0.073	12.6	0.0	2.1	7.8	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|379003441|ref|YP_005259113.1|	-	0.094	11.6	0.1	0.51	9.2	0.0	2.0	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
IPT	PF01745.11	gi|379003441|ref|YP_005259113.1|	-	0.15	11.1	0.3	4	6.5	0.0	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
HSP20	PF00011.16	gi|379003442|ref|YP_005259114.1|	-	8.8e-14	51.2	3.6	2.4e-12	46.6	2.5	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.11	gi|379003442|ref|YP_005259114.1|	-	2e-05	25.0	0.2	3.8e-05	24.1	0.2	1.4	1	0	0	1	1	1	1	CS	domain
PIH1	PF08190.7	gi|379003442|ref|YP_005259114.1|	-	0.0016	18.0	0.0	0.0018	17.8	0.0	1.1	1	0	0	1	1	1	1	pre-RNA	processing	PIH1/Nop17
DUF4097	PF13349.1	gi|379003442|ref|YP_005259114.1|	-	0.0071	15.9	0.5	0.023	14.2	0.1	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4097)
GvpH	PF05455.6	gi|379003442|ref|YP_005259114.1|	-	0.013	15.1	0.3	0.016	14.8	0.2	1.2	1	0	0	1	1	1	0	GvpH
DUF2258	PF10015.4	gi|379003443|ref|YP_005259115.1|	-	4.2e-29	100.1	1.6	6.4e-29	99.5	0.2	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
Cir_N	PF10197.4	gi|379003443|ref|YP_005259115.1|	-	3	7.9	5.8	0.31	11.0	0.6	1.9	2	0	0	2	2	2	0	N-terminal	domain	of	CBF1	interacting	co-repressor	CIR
Prefoldin_2	PF01920.15	gi|379003443|ref|YP_005259115.1|	-	3.6	7.4	5.7	3.6	7.4	1.8	2.2	3	0	0	3	3	3	0	Prefoldin	subunit
SPOUT_MTase_2	PF14419.1	gi|379003444|ref|YP_005259116.1|	-	4.1e-75	250.7	2.3	5.9e-75	250.2	1.6	1.2	1	0	0	1	1	1	1	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
THUMP	PF02926.12	gi|379003444|ref|YP_005259116.1|	-	2.8e-23	82.3	0.0	7.4e-23	81.0	0.0	1.7	1	0	0	1	1	1	1	THUMP	domain
Trypsin_2	PF13365.1	gi|379003445|ref|YP_005259117.1|	-	0.00032	20.6	0.0	0.00073	19.5	0.0	1.6	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Ribosomal_S11	PF00411.14	gi|379003447|ref|YP_005259119.1|	-	1.3e-38	131.5	0.1	1.7e-38	131.2	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S11
RcbX	PF02341.10	gi|379003449|ref|YP_005259121.1|	-	0.097	12.8	0.0	0.097	12.8	0.0	1.0	1	0	0	1	1	1	0	RbcX	protein
Radical_SAM	PF04055.16	gi|379003450|ref|YP_005259122.1|	-	3.8e-18	66.2	0.2	6.5e-17	62.1	0.0	2.4	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379003450|ref|YP_005259122.1|	-	0.00058	19.9	0.0	0.0011	19.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
TF_Zn_Ribbon	PF08271.7	gi|379003450|ref|YP_005259122.1|	-	0.0014	17.8	3.0	0.02	14.1	2.2	2.4	1	1	1	2	2	2	2	TFIIB	zinc-binding
DZR	PF12773.2	gi|379003450|ref|YP_005259122.1|	-	0.021	14.6	0.1	0.021	14.6	0.0	2.9	3	0	0	3	3	3	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|379003450|ref|YP_005259122.1|	-	0.074	12.5	3.1	13	5.3	0.1	3.3	3	0	0	3	3	3	0	A2L	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003450|ref|YP_005259122.1|	-	0.9	8.8	0.0	0.9	8.8	0.0	3.6	5	0	0	5	5	5	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003450|ref|YP_005259122.1|	-	3.2	7.3	9.8	3.4	7.2	0.0	3.4	4	0	0	4	4	4	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|379003450|ref|YP_005259122.1|	-	5.4	7.5	8.2	1.5e+02	3.0	0.1	4.6	5	0	0	5	5	5	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|379003450|ref|YP_005259122.1|	-	7.2	6.6	10.2	30	4.6	0.1	3.9	4	0	0	4	4	4	0	Zinc	ribbon	domain
PhoU_div	PF01865.11	gi|379003451|ref|YP_005259123.1|	-	9.5e-19	67.4	9.7	1.1e-18	67.1	6.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
PhoU	PF01895.14	gi|379003451|ref|YP_005259123.1|	-	0.00056	20.2	14.7	0.00082	19.7	3.3	2.8	2	1	2	4	4	4	1	PhoU	domain
CRM1_C	PF08767.6	gi|379003451|ref|YP_005259123.1|	-	0.0085	15.0	1.9	0.012	14.6	1.3	1.5	1	1	0	1	1	1	1	CRM1	C	terminal
Dynamin_M	PF01031.15	gi|379003451|ref|YP_005259123.1|	-	0.04	12.6	0.8	0.055	12.2	0.2	1.6	2	0	0	2	2	2	0	Dynamin	central	region
MutS_III	PF05192.13	gi|379003451|ref|YP_005259123.1|	-	0.043	13.5	0.5	0.28	10.9	0.3	2.1	1	1	0	1	1	1	0	MutS	domain	III
PRA-PH	PF01503.12	gi|379003451|ref|YP_005259123.1|	-	0.057	13.7	5.9	0.7	10.2	0.3	2.9	2	1	0	2	2	2	0	Phosphoribosyl-ATP	pyrophosphohydrolase
FliJ	PF02050.11	gi|379003451|ref|YP_005259123.1|	-	0.067	13.2	1.5	0.091	12.8	0.1	1.8	2	1	0	2	2	2	0	Flagellar	FliJ	protein
UBN2_2	PF14227.1	gi|379003451|ref|YP_005259123.1|	-	0.078	12.5	1.0	0.16	11.5	0.7	1.5	1	0	0	1	1	1	0	gag-polypeptide	of	LTR	copia-type
DUF936	PF06075.7	gi|379003451|ref|YP_005259123.1|	-	0.092	11.6	2.6	0.37	9.6	0.3	2.0	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF936)
PP2C_C	PF07830.8	gi|379003451|ref|YP_005259123.1|	-	0.28	11.2	1.8	2.4	8.3	0.1	2.5	2	0	0	2	2	2	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
PMC2NT	PF08066.7	gi|379003451|ref|YP_005259123.1|	-	7.1	7.0	7.1	5	7.5	0.1	3.0	3	1	0	3	3	3	0	PMC2NT	(NUC016)	domain
PHO4	PF01384.15	gi|379003452|ref|YP_005259124.1|	-	0.18	10.3	13.0	0.034	12.8	5.9	1.9	1	1	1	2	2	2	0	Phosphate	transporter	family
DUF3084	PF11283.3	gi|379003452|ref|YP_005259124.1|	-	0.23	11.3	7.1	0.17	11.7	1.0	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3084)
DUF3329	PF11808.3	gi|379003452|ref|YP_005259124.1|	-	3.7	7.6	6.6	0.87	9.7	0.2	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF3329)
Lactamase_B_3	PF13483.1	gi|379003453|ref|YP_005259125.1|	-	1.4e-34	119.1	0.1	2e-34	118.6	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|379003453|ref|YP_005259125.1|	-	2.5e-17	63.0	0.0	3.3e-17	62.6	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379003453|ref|YP_005259125.1|	-	3.8e-05	23.4	0.5	0.018	14.6	0.2	2.2	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Mtf2_C	PF14061.1	gi|379003453|ref|YP_005259125.1|	-	0.012	15.5	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	Polycomb-like	MTF2	factor	2
Peptidase_M48	PF01435.13	gi|379003455|ref|YP_005259127.1|	-	1.6e-44	152.1	0.2	2.1e-44	151.7	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M48
HEPN	PF05168.9	gi|379003457|ref|YP_005259129.1|	-	6.1e-35	119.6	0.6	6.8e-35	119.5	0.4	1.0	1	0	0	1	1	1	1	HEPN	domain
DUF4398	PF14346.1	gi|379003457|ref|YP_005259129.1|	-	0.051	13.6	1.4	0.051	13.6	1.0	2.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4398)
PaREP1	PF05942.6	gi|379003457|ref|YP_005259129.1|	-	0.23	11.3	6.7	0.46	10.3	4.6	1.8	1	1	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
NTP_transf_2	PF01909.18	gi|379003458|ref|YP_005259130.1|	-	4.1e-05	23.8	0.0	5.5e-05	23.4	0.0	1.5	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
PTPS	PF01242.14	gi|379003459|ref|YP_005259131.1|	-	0.026	14.2	0.0	0.026	14.1	0.0	1.1	1	0	0	1	1	1	0	6-pyruvoyl	tetrahydropterin	synthase
Myb_DNA-bind_5	PF13873.1	gi|379003459|ref|YP_005259131.1|	-	0.11	12.3	1.2	0.16	11.8	0.6	1.6	1	1	0	1	1	1	0	Myb/SANT-like	DNA-binding	domain
DUF2890	PF11081.3	gi|379003459|ref|YP_005259131.1|	-	1.1	9.3	5.1	6.2	6.8	3.5	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2890)
PIN	PF01850.16	gi|379003461|ref|YP_005259133.1|	-	4.8e-13	49.5	0.1	5.7e-13	49.2	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
DUF2684	PF10885.3	gi|379003461|ref|YP_005259133.1|	-	0.055	13.3	0.0	0.099	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2684)
Antitoxin-MazE	PF04014.13	gi|379003462|ref|YP_005259134.1|	-	0.00067	19.3	0.8	0.003	17.2	0.6	2.0	1	1	0	1	1	1	1	Antidote-toxin	recognition	MazE
MraZ	PF02381.13	gi|379003462|ref|YP_005259134.1|	-	0.038	13.7	0.0	0.062	13.0	0.0	1.3	1	0	0	1	1	1	0	MraZ	protein
Metallophos	PF00149.23	gi|379003463|ref|YP_005259135.1|	-	0.00063	19.1	7.0	0.0032	16.8	4.9	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Zn_Tnp_IS1595	PF12760.2	gi|379003465|ref|YP_005259137.1|	-	0.0033	17.2	2.4	0.0067	16.2	1.7	1.6	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|379003465|ref|YP_005259137.1|	-	0.0046	17.2	1.0	0.013	15.7	0.3	1.9	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.5	gi|379003465|ref|YP_005259137.1|	-	0.005	16.7	3.9	0.4	10.6	0.2	2.7	3	0	0	3	3	3	2	Zinc	ribbon	domain
Elf1	PF05129.8	gi|379003465|ref|YP_005259137.1|	-	0.013	15.2	0.1	0.024	14.3	0.0	1.5	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
GFA	PF04828.9	gi|379003465|ref|YP_005259137.1|	-	0.036	14.0	0.5	0.082	12.8	0.2	1.7	1	1	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-ISL3	PF14690.1	gi|379003465|ref|YP_005259137.1|	-	0.044	13.8	1.5	9.4	6.3	0.3	2.5	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-TFIIB	PF13453.1	gi|379003465|ref|YP_005259137.1|	-	0.071	12.3	1.4	0.19	10.9	0.9	1.7	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
TF_Zn_Ribbon	PF08271.7	gi|379003465|ref|YP_005259137.1|	-	0.092	12.0	2.5	0.42	9.9	1.8	2.0	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|379003465|ref|YP_005259137.1|	-	0.097	11.9	2.9	0.29	10.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|379003465|ref|YP_005259137.1|	-	0.53	9.9	2.7	15	5.3	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
DUF35_N	PF12172.3	gi|379003465|ref|YP_005259137.1|	-	1.3	9.0	5.0	16	5.5	0.2	2.7	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1	PF03811.8	gi|379003465|ref|YP_005259137.1|	-	2.3	7.7	8.9	20	4.7	6.2	2.2	1	1	0	1	1	1	0	InsA	N-terminal	domain
Prim_Zn_Ribbon	PF08273.7	gi|379003465|ref|YP_005259137.1|	-	3.6	7.7	6.0	5.6	7.1	0.1	2.9	3	0	0	3	3	3	0	Zinc-binding	domain	of	primase-helicase
HhH-GPD	PF00730.20	gi|379003466|ref|YP_005259138.1|	-	1.4e-11	44.6	0.0	1.9e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|379003466|ref|YP_005259138.1|	-	0.0023	17.5	0.3	0.0084	15.7	0.0	2.1	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
FliG_N	PF14842.1	gi|379003466|ref|YP_005259138.1|	-	0.034	14.2	0.1	0.054	13.6	0.0	1.3	1	0	0	1	1	1	0	FliG	N-terminal	domain
TPR_6	PF13174.1	gi|379003466|ref|YP_005259138.1|	-	0.22	12.0	0.9	0.5	10.9	0.1	2.0	2	0	0	2	2	2	0	Tetratricopeptide	repeat
CC	PF04942.9	gi|379003467|ref|YP_005259139.1|	-	0.051	13.4	0.0	0.1	12.5	0.0	1.5	1	0	0	1	1	1	0	CC	domain
SprT-like	PF10263.4	gi|379003469|ref|YP_005259141.1|	-	0.031	13.9	0.0	0.055	13.1	0.0	1.4	1	0	0	1	1	1	0	SprT-like	family
DNA_methylase	PF00145.12	gi|379003470|ref|YP_005259142.1|	-	1.4e-40	139.4	0.0	2.4e-28	99.2	0.0	2.1	2	0	0	2	2	2	2	C-5	cytosine-specific	DNA	methylase
HhH-GPD	PF00730.20	gi|379003471|ref|YP_005259143.1|	-	9.3e-14	51.6	0.4	1.8e-13	50.7	0.0	1.6	2	0	0	2	2	2	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH_5	PF14520.1	gi|379003471|ref|YP_005259143.1|	-	2.5e-05	24.3	1.0	0.003	17.6	0.7	3.1	1	1	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|379003471|ref|YP_005259143.1|	-	2.6e-05	23.6	0.8	0.00013	21.4	0.0	2.4	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|379003471|ref|YP_005259143.1|	-	0.0014	18.4	0.0	1	9.2	0.0	2.5	1	1	1	2	2	2	2	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|379003471|ref|YP_005259143.1|	-	0.016	15.4	11.7	0.016	15.4	8.1	1.7	2	0	0	2	2	2	0	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_8	PF14716.1	gi|379003471|ref|YP_005259143.1|	-	0.062	13.5	0.1	0.26	11.4	0.0	2.1	3	0	0	3	3	3	0	Helix-hairpin-helix	domain
Helicase_C	PF00271.26	gi|379003472|ref|YP_005259144.1|	-	4.6e-13	48.8	0.0	1.3e-12	47.4	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|379003472|ref|YP_005259144.1|	-	2.7e-12	46.5	0.0	3.3e-07	29.9	0.0	2.6	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_10	PF12846.2	gi|379003472|ref|YP_005259144.1|	-	0.17	11.2	0.0	12	5.2	0.0	3.1	3	1	1	4	4	4	0	AAA-like	domain
DUF1660	PF07874.6	gi|379003472|ref|YP_005259144.1|	-	0.46	10.8	2.0	0.71	10.2	0.2	2.2	2	0	0	2	2	2	0	Prophage	protein	(DUF1660)
DUF1998	PF09369.5	gi|379003473|ref|YP_005259145.1|	-	1.1e-09	38.6	0.2	4.3e-09	36.8	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1998)
zf-ribbon_3	PF13248.1	gi|379003473|ref|YP_005259145.1|	-	0.00049	19.2	1.7	0.00049	19.2	1.2	2.4	3	0	0	3	3	3	1	zinc-ribbon	domain
HypA	PF01155.14	gi|379003473|ref|YP_005259145.1|	-	0.011	15.4	0.0	0.028	14.1	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|379003473|ref|YP_005259145.1|	-	0.012	15.5	0.4	0.05	13.5	0.3	2.1	1	0	0	1	1	1	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379003473|ref|YP_005259145.1|	-	0.042	13.4	2.2	1.9	8.1	0.0	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|379003473|ref|YP_005259145.1|	-	0.1	12.2	0.2	0.1	12.2	0.2	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
TF_Zn_Ribbon	PF08271.7	gi|379003473|ref|YP_005259145.1|	-	0.19	11.0	3.2	0.76	9.1	2.2	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379003473|ref|YP_005259145.1|	-	0.37	10.3	7.0	5.1	6.7	4.3	2.8	2	1	1	3	3	3	0	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|379003473|ref|YP_005259145.1|	-	0.55	10.1	4.6	19	5.2	3.2	2.6	1	1	0	1	1	1	0	Rubredoxin
zinc_ribbon_4	PF13717.1	gi|379003473|ref|YP_005259145.1|	-	1.3	8.7	6.0	43	3.9	3.4	3.0	2	1	0	2	2	2	0	zinc-ribbon	domain
PLDc_2	PF13091.1	gi|379003474|ref|YP_005259146.1|	-	2.7e-10	40.0	0.0	3.8e-10	39.6	0.0	1.2	1	0	0	1	1	1	1	PLD-like	domain
PLDc	PF00614.17	gi|379003474|ref|YP_005259146.1|	-	0.021	14.6	0.1	0.04	13.7	0.1	1.4	1	0	0	1	1	1	0	Phospholipase	D	Active	site	motif
DUF1669	PF07894.7	gi|379003474|ref|YP_005259146.1|	-	0.17	11.0	0.1	0.24	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1669)
OrfB_Zn_ribbon	PF07282.6	gi|379003478|ref|YP_005259150.1|	-	0.00061	19.3	0.1	0.00094	18.7	0.1	1.3	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Chorismate_bind	PF00425.13	gi|379003478|ref|YP_005259150.1|	-	0.0016	17.7	0.0	0.0021	17.4	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
PaREP1	PF05942.6	gi|379003479|ref|YP_005259151.1|	-	8.6e-28	96.5	1.0	1.1e-27	96.1	0.7	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
PaREP1	PF05942.6	gi|379003480|ref|YP_005259152.1|	-	1.4e-25	89.3	2.7	1.9e-25	88.9	1.9	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Sec16_C	PF12931.2	gi|379003480|ref|YP_005259152.1|	-	0.034	13.9	0.1	0.043	13.5	0.1	1.1	1	0	0	1	1	1	0	Sec23-binding	domain	of	Sec16
HTH_3	PF01381.17	gi|379003481|ref|YP_005259153.1|	-	2.1e-15	56.3	0.0	4e-15	55.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|379003481|ref|YP_005259153.1|	-	6.3e-14	51.9	0.0	1.7e-13	50.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|379003481|ref|YP_005259153.1|	-	3e-10	39.9	0.1	1.2e-09	38.0	0.0	2.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|379003481|ref|YP_005259153.1|	-	1.1e-09	38.3	0.0	2.2e-09	37.3	0.0	1.5	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
Methyltransf_23	PF13489.1	gi|379003481|ref|YP_005259153.1|	-	0.00031	20.5	0.0	0.00071	19.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
HTH_psq	PF05225.11	gi|379003481|ref|YP_005259153.1|	-	0.0027	17.2	0.1	0.091	12.3	0.0	2.6	2	0	0	2	2	2	1	helix-turn-helix,	Psq	domain
HTH_37	PF13744.1	gi|379003481|ref|YP_005259153.1|	-	0.0049	16.6	0.0	0.013	15.3	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|379003481|ref|YP_005259153.1|	-	0.0065	16.0	0.0	0.014	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_35	PF13693.1	gi|379003481|ref|YP_005259153.1|	-	0.065	13.0	0.1	0.17	11.7	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|379003481|ref|YP_005259153.1|	-	0.071	12.7	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
EamA	PF00892.15	gi|379003482|ref|YP_005259154.1|	-	3.7e-26	91.6	42.6	3e-19	69.2	10.0	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
Metallophos	PF00149.23	gi|379003484|ref|YP_005259156.1|	-	6.7e-08	32.1	0.1	1e-07	31.6	0.1	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|379003484|ref|YP_005259156.1|	-	0.00037	20.3	0.0	0.00048	19.9	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Flavodoxin_5	PF12724.2	gi|379003484|ref|YP_005259156.1|	-	0.12	12.3	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	Flavodoxin	domain
TAT_signal	PF10518.4	gi|379003484|ref|YP_005259156.1|	-	1.8	8.8	10.8	0.28	11.3	4.8	1.8	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
OrfB_Zn_ribbon	PF07282.6	gi|379003486|ref|YP_005259158.1|	-	0.2	11.3	0.9	0.33	10.6	0.6	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
AAA_10	PF12846.2	gi|379003488|ref|YP_005259160.1|	-	1.4e-10	41.1	0.0	6.5e-06	25.8	0.0	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.1	gi|379003488|ref|YP_005259160.1|	-	2.6e-05	24.3	0.0	6.1e-05	23.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379003488|ref|YP_005259160.1|	-	9.9e-05	21.8	0.1	0.0011	18.5	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_33	PF13671.1	gi|379003488|ref|YP_005259160.1|	-	0.0032	17.3	0.0	0.0054	16.6	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|379003488|ref|YP_005259160.1|	-	0.0063	15.4	0.1	0.014	14.3	0.0	1.5	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
DUF853	PF05872.7	gi|379003488|ref|YP_005259160.1|	-	0.013	13.9	0.2	0.48	8.7	0.0	2.1	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF853)
AAA_16	PF13191.1	gi|379003488|ref|YP_005259160.1|	-	0.017	15.1	0.4	0.044	13.7	0.2	1.8	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.1	gi|379003488|ref|YP_005259160.1|	-	0.025	14.1	0.2	0.046	13.2	0.1	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Zot	PF05707.7	gi|379003488|ref|YP_005259160.1|	-	0.041	13.3	0.0	0.22	10.9	0.0	1.9	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Pox_A32	PF04665.7	gi|379003488|ref|YP_005259160.1|	-	0.045	13.0	0.1	0.11	11.8	0.0	1.5	2	0	0	2	2	2	0	Poxvirus	A32	protein
NACHT	PF05729.7	gi|379003488|ref|YP_005259160.1|	-	0.093	12.3	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
Miro	PF08477.8	gi|379003488|ref|YP_005259160.1|	-	0.093	13.2	0.1	0.15	12.5	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
TrwB_AAD_bind	PF10412.4	gi|379003488|ref|YP_005259160.1|	-	0.098	11.2	0.0	0.15	10.6	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF87	PF01935.12	gi|379003488|ref|YP_005259160.1|	-	0.11	12.3	0.3	0.2	11.4	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_17	PF13207.1	gi|379003488|ref|YP_005259160.1|	-	0.11	13.2	0.0	0.28	12.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|379003488|ref|YP_005259160.1|	-	0.12	11.9	0.0	0.17	11.3	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
cobW	PF02492.14	gi|379003488|ref|YP_005259160.1|	-	0.15	11.4	0.0	0.24	10.8	0.0	1.2	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
KaiC	PF06745.8	gi|379003488|ref|YP_005259160.1|	-	0.2	10.7	0.1	0.32	10.0	0.0	1.2	1	0	0	1	1	1	0	KaiC
PaREP1	PF05942.6	gi|379003490|ref|YP_005259162.1|	-	3.1e-30	104.4	4.5	4.7e-30	103.8	3.2	1.3	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
TPR_19	PF14559.1	gi|379003490|ref|YP_005259162.1|	-	0.85	10.0	3.6	5.5	7.4	0.2	2.3	1	1	1	2	2	2	0	Tetratricopeptide	repeat
Rieske	PF00355.21	gi|379003493|ref|YP_005259165.1|	-	8e-12	44.5	0.0	1.5e-11	43.7	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
YtxH	PF12732.2	gi|379003493|ref|YP_005259165.1|	-	0.067	13.5	1.9	0.12	12.7	1.3	1.5	1	1	0	1	1	1	0	YtxH-like	protein
Pollen_allerg_1	PF01357.16	gi|379003493|ref|YP_005259165.1|	-	0.12	12.1	0.0	0.26	11.1	0.0	1.5	1	0	0	1	1	1	0	Pollen	allergen
Molybdopterin	PF00384.17	gi|379003494|ref|YP_005259166.1|	-	9.8e-26	90.4	0.0	1.5e-24	86.5	0.0	2.3	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379003494|ref|YP_005259166.1|	-	8e-24	83.5	0.3	1.8e-23	82.4	0.2	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|379003494|ref|YP_005259166.1|	-	0.0028	17.4	0.1	0.006	16.3	0.1	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
PaREP1	PF05942.6	gi|379003496|ref|YP_005259168.1|	-	9.4e-23	80.2	5.9	1.1e-22	80.0	4.1	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
DUF1626	PF07788.6	gi|379003497|ref|YP_005259169.1|	-	6.9e-29	99.4	1.2	6.9e-29	99.4	0.8	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1626)
DUF3782	PF12644.2	gi|379003497|ref|YP_005259169.1|	-	3.8e-27	93.8	40.6	2e-18	65.9	4.3	5.3	2	1	2	4	4	4	3	Protein	of	unknown	function	(DUF3782)
DUF1640	PF07798.6	gi|379003497|ref|YP_005259169.1|	-	0.0006	19.8	12.1	0.0089	16.0	5.2	2.7	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1640)
Asp_Glu_race	PF01177.17	gi|379003497|ref|YP_005259169.1|	-	0.094	12.6	1.5	0.24	11.2	0.0	2.2	1	1	0	2	2	2	0	Asp/Glu/Hydantoin	racemase
DUF3349	PF11829.3	gi|379003497|ref|YP_005259169.1|	-	0.3	11.5	7.5	8	6.9	1.3	3.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3349)
DUF1280	PF06918.9	gi|379003497|ref|YP_005259169.1|	-	0.36	10.0	4.7	1.1	8.4	3.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1280)
Ribosomal_S13	PF00416.17	gi|379003497|ref|YP_005259169.1|	-	1.1	9.7	5.3	4.2	7.8	2.1	2.7	1	1	1	2	2	2	0	Ribosomal	protein	S13/S18
FUSC	PF04632.7	gi|379003497|ref|YP_005259169.1|	-	1.1	7.5	4.5	1.4	7.2	3.1	1.2	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
DUF964	PF06133.6	gi|379003497|ref|YP_005259169.1|	-	1.6	8.7	12.3	1	9.3	5.3	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF964)
Erp_C	PF06780.6	gi|379003497|ref|YP_005259169.1|	-	2.6	7.8	15.9	52	3.6	11.1	3.0	1	1	0	1	1	1	0	Erp	protein	C-terminus
Trep_dent_lipo	PF09710.5	gi|379003497|ref|YP_005259169.1|	-	3.5	6.2	6.4	4.9	5.7	4.5	1.1	1	0	0	1	1	1	0	Treponema	clustered	lipoprotein	(Trep_dent_lipo)
Med28	PF11594.3	gi|379003497|ref|YP_005259169.1|	-	3.7	7.8	15.6	8.2	6.7	5.0	2.9	1	1	1	2	2	2	0	Mediator	complex	subunit	28
Acetyltransf_4	PF13420.1	gi|379003497|ref|YP_005259169.1|	-	5	7.0	7.0	16	5.4	0.3	3.1	1	1	2	3	3	3	0	Acetyltransferase	(GNAT)	domain
SPT16	PF08644.6	gi|379003497|ref|YP_005259169.1|	-	9.8	6.0	9.7	6.7	6.5	0.5	2.5	1	1	1	2	2	2	0	FACT	complex	subunit	(SPT16/CDC68)
AAA_10	PF12846.2	gi|379003498|ref|YP_005259170.1|	-	1.1e-13	51.3	0.1	2e-08	34.0	0.0	2.1	1	1	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.1	gi|379003498|ref|YP_005259170.1|	-	2.2e-07	31.0	0.0	0.006	16.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
DUF87	PF01935.12	gi|379003498|ref|YP_005259170.1|	-	6.3e-07	29.4	0.0	1.1e-06	28.6	0.0	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_14	PF13173.1	gi|379003498|ref|YP_005259170.1|	-	1.7e-05	24.6	0.1	0.16	11.8	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
Arch_ATPase	PF01637.13	gi|379003498|ref|YP_005259170.1|	-	0.0004	20.1	0.9	0.014	15.1	0.1	2.7	1	1	1	2	2	2	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|379003498|ref|YP_005259170.1|	-	0.00043	21.0	0.2	0.008	16.9	0.2	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|379003498|ref|YP_005259170.1|	-	0.02	15.2	0.0	0.04	14.2	0.0	1.7	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379003498|ref|YP_005259170.1|	-	0.069	12.9	0.0	0.21	11.3	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
CobU	PF02283.11	gi|379003498|ref|YP_005259170.1|	-	0.094	12.1	0.1	0.25	10.7	0.0	1.7	2	0	0	2	2	2	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
DEAD	PF00270.24	gi|379003498|ref|YP_005259170.1|	-	0.1	12.0	0.0	1.5	8.2	0.0	2.2	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
AAA_16	PF13191.1	gi|379003498|ref|YP_005259170.1|	-	0.2	11.6	1.1	0.7	9.8	0.8	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
DUF3253	PF11625.3	gi|379003500|ref|YP_005259172.1|	-	0.094	12.6	0.0	0.14	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3253)
Peptidase_M48	PF01435.13	gi|379003501|ref|YP_005259173.1|	-	1.3e-16	60.9	0.4	2.6e-16	59.8	0.3	1.4	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|379003501|ref|YP_005259173.1|	-	1.2e-05	24.4	3.4	7.7e-05	21.8	0.2	2.6	2	1	1	3	3	3	1	BlaR1	peptidase	M56
DUF2201_N	PF13203.1	gi|379003501|ref|YP_005259173.1|	-	0.093	11.8	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	Putative	metallopeptidase	domain
BtpA	PF03437.10	gi|379003504|ref|YP_005259176.1|	-	1.4e-53	181.7	0.0	2.2e-53	181.1	0.0	1.3	1	0	0	1	1	1	1	BtpA	family
Trp_syntA	PF00290.15	gi|379003504|ref|YP_005259176.1|	-	0.11	11.0	0.0	0.79	8.2	0.0	2.0	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
DUF651	PF04895.7	gi|379003504|ref|YP_005259176.1|	-	0.13	11.8	0.3	0.25	10.9	0.2	1.3	1	0	0	1	1	1	0	Archaeal	protein	of	unknown	function	(DUF651)
NTP_transferase	PF00483.18	gi|379003505|ref|YP_005259177.1|	-	1.7e-39	135.6	0.0	2.1e-39	135.3	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|379003505|ref|YP_005259177.1|	-	2.4e-11	42.5	11.5	1.8e-08	33.4	0.5	4.0	2	1	1	3	3	3	3	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|379003505|ref|YP_005259177.1|	-	1.1e-08	35.2	0.0	4.4e-08	33.3	0.0	1.8	2	0	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep_2	PF14602.1	gi|379003505|ref|YP_005259177.1|	-	0.00021	20.7	0.2	0.00021	20.7	0.1	4.0	3	1	0	3	3	3	1	Hexapeptide	repeat	of	succinyl-transferase
HIT	PF01230.18	gi|379003508|ref|YP_005259180.1|	-	3.8e-12	46.5	0.0	5.3e-12	46.1	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
CwfJ_C_1	PF04677.10	gi|379003508|ref|YP_005259180.1|	-	1.8e-08	34.0	0.0	2.5e-08	33.5	0.0	1.3	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
DcpS_C	PF11969.3	gi|379003508|ref|YP_005259180.1|	-	1.6e-05	25.1	0.0	3.1e-05	24.1	0.0	1.5	1	1	1	2	2	2	2	Scavenger	mRNA	decapping	enzyme	C-term	binding
AAA_21	PF13304.1	gi|379003510|ref|YP_005259182.1|	-	0.005	16.8	0.0	0.11	12.4	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379003510|ref|YP_005259182.1|	-	0.0073	16.4	0.1	2.6	8.1	0.0	2.8	2	1	1	3	3	3	2	AAA	domain
AAA_29	PF13555.1	gi|379003510|ref|YP_005259182.1|	-	0.01	15.3	0.0	0.026	14.0	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|379003510|ref|YP_005259182.1|	-	0.016	15.4	0.0	0.77	9.9	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|379003510|ref|YP_005259182.1|	-	0.066	12.6	0.1	0.17	11.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
STAS_2	PF13466.1	gi|379003510|ref|YP_005259182.1|	-	0.067	13.2	1.3	0.13	12.2	0.3	1.9	2	0	0	2	2	2	0	STAS	domain
AAA_23	PF13476.1	gi|379003510|ref|YP_005259182.1|	-	0.079	13.2	0.0	0.1	12.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
PIN	PF01850.16	gi|379003511|ref|YP_005259183.1|	-	4.6e-09	36.6	1.3	2.9e-07	30.8	0.9	2.0	1	1	0	1	1	1	1	PIN	domain
PIN_4	PF13638.1	gi|379003511|ref|YP_005259183.1|	-	3.4e-07	30.4	0.7	0.0002	21.4	0.3	2.1	1	1	1	2	2	2	2	PIN	domain
Fcf1	PF04900.7	gi|379003511|ref|YP_005259183.1|	-	6.7e-05	22.9	0.0	8.3e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Fcf1
UPF0278	PF08745.6	gi|379003511|ref|YP_005259183.1|	-	0.00067	18.9	2.9	0.0096	15.1	0.2	2.2	1	1	1	2	2	2	2	UPF0278	family
PIN_3	PF13470.1	gi|379003511|ref|YP_005259183.1|	-	0.013	16.1	0.2	0.029	15.0	0.1	1.7	1	1	0	1	1	1	0	PIN	domain
Mut7-C	PF01927.11	gi|379003511|ref|YP_005259183.1|	-	0.12	12.3	0.0	0.25	11.3	0.0	1.4	1	1	0	1	1	1	0	Mut7-C	RNAse	domain
TRAM	PF01938.15	gi|379003512|ref|YP_005259184.1|	-	1.9e-13	49.9	5.1	2.2e-13	49.7	3.5	1.1	1	0	0	1	1	1	1	TRAM	domain
CusF_Ec	PF11604.3	gi|379003512|ref|YP_005259184.1|	-	0.015	15.1	0.2	1	9.2	0.0	2.1	2	0	0	2	2	2	0	Copper	binding	periplasmic	protein	CusF
S1	PF00575.18	gi|379003512|ref|YP_005259184.1|	-	2.6	8.1	6.7	24	5.1	4.6	2.1	1	1	0	1	1	1	0	S1	RNA	binding	domain
tRNA-synt_1b	PF00579.20	gi|379003513|ref|YP_005259185.1|	-	5.4e-31	107.8	0.0	1.1e-30	106.7	0.0	1.4	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
tRNA-synt_1f	PF01921.13	gi|379003513|ref|YP_005259185.1|	-	0.089	11.4	0.0	1.1	7.9	0.0	2.1	2	0	0	2	2	2	0	tRNA	synthetases	class	I	(K)
HHH	PF00633.18	gi|379003514|ref|YP_005259186.1|	-	0.0021	17.6	0.0	0.018	14.7	0.0	2.2	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
Vg_Tdu	PF07545.9	gi|379003514|ref|YP_005259186.1|	-	0.062	12.7	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Vestigial/Tondu	family
Radical_SAM	PF04055.16	gi|379003515|ref|YP_005259187.1|	-	4.2e-16	59.5	0.0	7.1e-16	58.8	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379003515|ref|YP_005259187.1|	-	7.2e-08	32.4	0.0	1.3e-07	31.6	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379003515|ref|YP_005259187.1|	-	4.1e-07	30.2	0.0	7.6e-07	29.3	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Ribosomal_L31e	PF01198.14	gi|379003516|ref|YP_005259188.1|	-	5.7e-27	93.1	3.4	7.1e-27	92.9	2.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
eIF-6	PF01912.13	gi|379003517|ref|YP_005259189.1|	-	2.6e-63	212.7	1.4	3e-63	212.5	1.0	1.0	1	0	0	1	1	1	1	eIF-6	family
DUF2642	PF10842.3	gi|379003517|ref|YP_005259189.1|	-	0.12	11.8	0.0	1.2	8.6	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2642)
Ribosomal_L18ae	PF01775.12	gi|379003518|ref|YP_005259190.1|	-	1.5e-06	28.1	0.2	2.5e-06	27.4	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
Prefoldin	PF02996.12	gi|379003519|ref|YP_005259191.1|	-	1.3e-21	76.4	0.1	2.4e-21	75.6	0.0	1.4	1	1	0	1	1	1	1	Prefoldin	subunit
Seryl_tRNA_N	PF02403.17	gi|379003519|ref|YP_005259191.1|	-	0.0028	17.6	2.0	0.6	10.1	0.1	2.1	2	0	0	2	2	2	2	Seryl-tRNA	synthetase	N-terminal	domain
ApoL	PF05461.6	gi|379003519|ref|YP_005259191.1|	-	0.028	13.6	0.2	0.04	13.1	0.1	1.5	1	1	0	1	1	1	0	Apolipoprotein	L
DivIVA	PF05103.8	gi|379003519|ref|YP_005259191.1|	-	0.031	14.3	2.0	1	9.4	0.1	2.1	2	0	0	2	2	2	0	DivIVA	protein
RmuC	PF02646.11	gi|379003519|ref|YP_005259191.1|	-	0.035	12.9	0.9	2	7.1	0.0	2.0	2	0	0	2	2	2	0	RmuC	family
ALIX_LYPXL_bnd	PF13949.1	gi|379003519|ref|YP_005259191.1|	-	0.038	12.9	0.7	1.1	8.1	0.0	2.0	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
GAT	PF03127.9	gi|379003519|ref|YP_005259191.1|	-	0.047	13.6	1.7	1.6	8.7	0.4	2.0	2	0	0	2	2	2	0	GAT	domain
Prefoldin_2	PF01920.15	gi|379003519|ref|YP_005259191.1|	-	0.065	12.9	5.3	1.7	8.4	0.4	2.4	2	1	0	2	2	2	0	Prefoldin	subunit
DUF615	PF04751.9	gi|379003519|ref|YP_005259191.1|	-	0.068	12.8	0.7	0.12	12.0	0.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF615)
BLOC1_2	PF10046.4	gi|379003519|ref|YP_005259191.1|	-	0.075	13.1	2.4	6.6	6.9	0.2	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
BAG	PF02179.11	gi|379003519|ref|YP_005259191.1|	-	0.085	12.9	2.2	0.23	11.5	0.1	2.1	2	0	0	2	2	2	0	BAG	domain
CorA	PF01544.13	gi|379003519|ref|YP_005259191.1|	-	0.087	11.8	1.8	2.2	7.2	0.4	2.1	2	0	0	2	2	2	0	CorA-like	Mg2+	transporter	protein
Apolipoprotein	PF01442.13	gi|379003519|ref|YP_005259191.1|	-	0.13	11.7	2.2	2.9	7.3	0.0	2.1	2	0	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
Nab2	PF11517.3	gi|379003519|ref|YP_005259191.1|	-	0.14	12.2	0.0	1.5	8.9	0.0	2.1	2	0	0	2	2	2	0	Nuclear	abundant	poly(A)	RNA-bind	protein	2	(Nab2)
DUF4164	PF13747.1	gi|379003519|ref|YP_005259191.1|	-	0.26	11.4	7.9	2.2	8.4	0.5	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF3450	PF11932.3	gi|379003519|ref|YP_005259191.1|	-	0.36	10.0	3.8	5.4	6.2	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3450)
NPV_P10	PF05531.7	gi|379003519|ref|YP_005259191.1|	-	0.37	11.0	1.9	2.1	8.6	0.3	2.1	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
IncA	PF04156.9	gi|379003519|ref|YP_005259191.1|	-	1.1	8.8	10.6	3.4	7.2	1.7	2.1	2	0	0	2	2	2	0	IncA	protein
TMF_TATA_bd	PF12325.3	gi|379003519|ref|YP_005259191.1|	-	1.4	8.6	7.2	2	8.1	0.6	2.1	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
CENP-Q	PF13094.1	gi|379003519|ref|YP_005259191.1|	-	2.6	8.0	6.6	11	6.0	0.9	2.1	2	0	0	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF4200	PF13863.1	gi|379003519|ref|YP_005259191.1|	-	9.8	6.1	9.1	1.7	8.6	1.6	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
SRP54	PF00448.17	gi|379003520|ref|YP_005259192.1|	-	5.2e-66	221.8	0.0	6.9e-66	221.4	0.0	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|379003520|ref|YP_005259192.1|	-	1.4e-09	37.8	3.6	2.9e-09	36.9	2.5	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|379003520|ref|YP_005259192.1|	-	2.6e-06	26.9	0.1	2.4e-05	23.8	0.1	2.3	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|379003520|ref|YP_005259192.1|	-	5.7e-05	22.8	0.1	0.00033	20.3	0.0	2.1	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|379003520|ref|YP_005259192.1|	-	8.9e-05	22.0	0.0	0.00021	20.7	0.0	1.6	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.1	gi|379003520|ref|YP_005259192.1|	-	0.0002	21.5	0.0	0.00051	20.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379003520|ref|YP_005259192.1|	-	0.00021	21.1	0.0	0.0004	20.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|379003520|ref|YP_005259192.1|	-	0.00023	20.9	0.1	0.0041	16.8	0.1	2.6	1	1	2	3	3	3	1	NTPase
AAA_30	PF13604.1	gi|379003520|ref|YP_005259192.1|	-	0.00037	20.1	0.1	0.0006	19.4	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|379003520|ref|YP_005259192.1|	-	0.00071	18.4	0.9	0.015	14.0	0.0	2.8	1	1	1	2	2	2	1	ArgK	protein
AAA_28	PF13521.1	gi|379003520|ref|YP_005259192.1|	-	0.00089	19.2	0.1	0.0017	18.3	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379003520|ref|YP_005259192.1|	-	0.00095	18.6	0.1	0.0022	17.5	0.0	2.0	2	1	0	2	2	2	1	AAA-like	domain
VirC1	PF07015.6	gi|379003520|ref|YP_005259192.1|	-	0.0011	18.1	0.0	0.0018	17.4	0.0	1.3	1	0	0	1	1	1	1	VirC1	protein
AAA_16	PF13191.1	gi|379003520|ref|YP_005259192.1|	-	0.0014	18.6	0.0	0.0026	17.7	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|379003520|ref|YP_005259192.1|	-	0.0032	17.1	0.3	0.0091	15.7	0.1	1.7	1	1	0	1	1	1	1	Part	of	AAA	domain
AAA	PF00004.24	gi|379003520|ref|YP_005259192.1|	-	0.0034	17.5	0.0	0.019	15.1	0.0	2.1	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|379003520|ref|YP_005259192.1|	-	0.0081	15.2	0.4	0.021	13.9	0.0	1.8	2	1	0	2	2	2	1	Zeta	toxin
FANCI_S1	PF14675.1	gi|379003520|ref|YP_005259192.1|	-	0.0083	15.4	0.2	0.012	14.9	0.1	1.2	1	0	0	1	1	1	1	FANCI	solenoid	1
AAA_24	PF13479.1	gi|379003520|ref|YP_005259192.1|	-	0.014	14.9	0.0	0.05	13.1	0.0	2.0	2	1	0	2	2	1	0	AAA	domain
GTP_EFTU	PF00009.22	gi|379003520|ref|YP_005259192.1|	-	0.019	14.4	0.0	0.052	12.9	0.0	1.7	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
APS_kinase	PF01583.15	gi|379003520|ref|YP_005259192.1|	-	0.019	14.6	0.0	0.038	13.6	0.0	1.5	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NACHT	PF05729.7	gi|379003520|ref|YP_005259192.1|	-	0.022	14.4	0.0	0.045	13.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
ABC_tran	PF00005.22	gi|379003520|ref|YP_005259192.1|	-	0.025	14.8	0.0	0.058	13.6	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_25	PF13481.1	gi|379003520|ref|YP_005259192.1|	-	0.035	13.5	0.1	0.1	11.9	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379003520|ref|YP_005259192.1|	-	0.037	13.7	0.0	0.1	12.2	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
TrwB_AAD_bind	PF10412.4	gi|379003520|ref|YP_005259192.1|	-	0.053	12.1	0.0	0.12	10.9	0.0	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_23	PF13476.1	gi|379003520|ref|YP_005259192.1|	-	0.088	13.1	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Spt5-NGN	PF03439.8	gi|379003522|ref|YP_005259194.1|	-	4.3e-19	68.0	1.3	4.3e-19	68.0	0.9	1.6	2	0	0	2	2	2	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|379003522|ref|YP_005259194.1|	-	0.013	15.1	2.6	0.029	14.0	1.8	1.6	1	0	0	1	1	1	0	KOW	motif
Ribosomal_L11	PF00298.14	gi|379003523|ref|YP_005259195.1|	-	9.9e-16	57.6	0.0	1.8e-15	56.8	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
SAP	PF02037.22	gi|379003523|ref|YP_005259195.1|	-	0.27	10.8	1.8	4.1	7.0	0.0	3.1	4	0	0	4	4	4	0	SAP	domain
Ribosomal_L1	PF00687.16	gi|379003524|ref|YP_005259196.1|	-	9.1e-41	139.5	0.1	1.1e-40	139.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
AD	PF09793.4	gi|379003524|ref|YP_005259196.1|	-	0.1	12.4	0.1	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	Anticodon-binding	domain
Ribosomal_L10	PF00466.15	gi|379003525|ref|YP_005259197.1|	-	1.8e-17	63.0	0.0	3e-16	59.1	0.0	2.2	2	0	0	2	2	2	1	Ribosomal	protein	L10
DUF1440	PF07274.7	gi|379003525|ref|YP_005259197.1|	-	0.098	12.6	0.0	0.22	11.5	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1440)
GHMP_kinases_N	PF00288.21	gi|379003526|ref|YP_005259198.1|	-	5.6e-13	48.7	0.7	1.1e-12	47.8	0.5	1.5	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|379003526|ref|YP_005259198.1|	-	5.4e-09	36.1	0.3	7.8e-08	32.4	0.0	2.2	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|379003526|ref|YP_005259198.1|	-	0.011	14.9	0.0	0.022	14.0	0.0	1.5	1	0	0	1	1	1	0	Galactokinase	galactose-binding	signature
MtN3_slv	PF03083.11	gi|379003527|ref|YP_005259199.1|	-	0.003	17.3	2.3	0.0037	17.0	1.5	1.3	1	1	0	1	1	1	1	Sugar	efflux	transporter	for	intercellular	exchange
V_ATPase_I	PF01496.14	gi|379003527|ref|YP_005259199.1|	-	0.017	13.0	2.3	0.67	7.7	1.2	2.0	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
LAB_N	PF07578.6	gi|379003527|ref|YP_005259199.1|	-	0.019	14.9	1.5	0.028	14.3	1.0	1.4	1	1	0	1	1	1	0	Lipid	A	Biosynthesis	N-terminal	domain
DUF751	PF05421.6	gi|379003527|ref|YP_005259199.1|	-	0.09	13.0	0.5	0.09	13.0	0.4	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF751)
PNP_UDP_1	PF01048.15	gi|379003528|ref|YP_005259200.1|	-	4e-40	137.2	0.3	4.5e-40	137.0	0.2	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
DUF2122	PF09895.4	gi|379003530|ref|YP_005259202.1|	-	1.2e-28	99.3	0.0	1.6e-28	98.9	0.0	1.1	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
QRPTase_C	PF01729.14	gi|379003531|ref|YP_005259203.1|	-	9.2e-49	165.2	0.2	1.5e-48	164.4	0.1	1.4	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|379003531|ref|YP_005259203.1|	-	4.7e-20	71.2	0.0	1.4e-19	69.6	0.0	1.9	2	0	0	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
NAD_binding_3	PF03447.11	gi|379003531|ref|YP_005259203.1|	-	2.3e-16	60.2	0.7	7.2e-16	58.6	0.5	1.9	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
DUF108	PF01958.13	gi|379003531|ref|YP_005259203.1|	-	2.7e-13	49.9	0.0	6.5e-13	48.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF108
DapB_N	PF01113.15	gi|379003531|ref|YP_005259203.1|	-	3.6e-09	36.5	1.1	1.2e-08	34.9	0.1	2.3	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|379003531|ref|YP_005259203.1|	-	6e-06	26.7	0.1	2.1e-05	24.9	0.1	2.0	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.14	gi|379003531|ref|YP_005259203.1|	-	4.2e-05	22.7	0.1	9.3e-05	21.6	0.1	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379003531|ref|YP_005259203.1|	-	4.3e-05	23.8	0.7	0.0003	21.1	0.1	2.4	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
CoA_binding	PF02629.14	gi|379003531|ref|YP_005259203.1|	-	5.1e-05	23.7	1.0	0.0002	21.7	0.0	2.4	3	0	0	3	3	2	1	CoA	binding	domain
Gp_dh_N	PF00044.19	gi|379003531|ref|YP_005259203.1|	-	0.00037	20.4	0.5	0.0019	18.1	0.1	2.5	4	1	0	4	4	4	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|379003531|ref|YP_005259203.1|	-	0.00039	20.3	0.3	0.0055	16.5	0.0	2.4	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|379003531|ref|YP_005259203.1|	-	0.0011	18.9	2.2	0.0019	18.1	0.1	2.4	3	0	0	3	3	3	1	TrkA-N	domain
AP_endonuc_2	PF01261.19	gi|379003531|ref|YP_005259203.1|	-	0.015	14.5	0.0	0.29	10.3	0.0	2.5	3	0	0	3	3	3	0	Xylose	isomerase-like	TIM	barrel
Saccharop_dh	PF03435.13	gi|379003531|ref|YP_005259203.1|	-	0.053	12.4	0.3	0.094	11.6	0.2	1.4	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NadA	PF02445.11	gi|379003532|ref|YP_005259204.1|	-	1.7e-111	371.7	0.0	1.9e-111	371.5	0.0	1.0	1	0	0	1	1	1	1	Quinolinate	synthetase	A	protein
NAD_kinase	PF01513.16	gi|379003533|ref|YP_005259205.1|	-	4.4e-20	71.6	0.1	6e-20	71.1	0.1	1.2	1	0	0	1	1	1	1	ATP-NAD	kinase
HTH_5	PF01022.15	gi|379003533|ref|YP_005259205.1|	-	1.4e-08	34.2	0.1	3.5e-08	32.9	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_9	PF08221.6	gi|379003533|ref|YP_005259205.1|	-	1.3e-05	24.9	0.1	2.5e-05	24.0	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_27	PF13463.1	gi|379003533|ref|YP_005259205.1|	-	1.7e-05	25.0	0.0	5.2e-05	23.4	0.0	1.9	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|379003533|ref|YP_005259205.1|	-	2.1e-05	24.0	0.5	5.7e-05	22.6	0.1	1.9	2	0	0	2	2	2	1	HTH	domain
MarR_2	PF12802.2	gi|379003533|ref|YP_005259205.1|	-	2.3e-05	23.9	0.1	4.8e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|379003533|ref|YP_005259205.1|	-	2.9e-05	23.3	1.9	7.2e-05	22.0	0.3	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379003533|ref|YP_005259205.1|	-	3.4e-05	23.4	0.1	8e-05	22.2	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|379003533|ref|YP_005259205.1|	-	0.00014	21.9	0.3	0.00035	20.6	0.1	1.7	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_IclR	PF09339.5	gi|379003533|ref|YP_005259205.1|	-	0.00029	20.3	0.2	0.00066	19.2	0.2	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|379003533|ref|YP_005259205.1|	-	0.0016	18.1	0.1	0.0029	17.2	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_23	PF13384.1	gi|379003533|ref|YP_005259205.1|	-	0.0035	16.9	0.0	0.0066	16.0	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Mga	PF08280.6	gi|379003533|ref|YP_005259205.1|	-	0.0054	16.4	0.0	0.011	15.4	0.0	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF742	PF05331.6	gi|379003533|ref|YP_005259205.1|	-	0.0063	16.0	0.4	0.013	15.0	0.3	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF742)
HTH_28	PF13518.1	gi|379003533|ref|YP_005259205.1|	-	0.0066	16.4	0.0	0.013	15.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
FeoC	PF09012.5	gi|379003533|ref|YP_005259205.1|	-	0.0089	15.7	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_29	PF13551.1	gi|379003533|ref|YP_005259205.1|	-	0.012	15.7	0.0	0.032	14.3	0.0	1.7	2	0	0	2	2	1	0	Winged	helix-turn	helix
HTH_20	PF12840.2	gi|379003533|ref|YP_005259205.1|	-	0.014	15.1	0.1	0.031	14.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379003533|ref|YP_005259205.1|	-	0.018	14.5	0.0	0.035	13.6	0.0	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_36	PF13730.1	gi|379003533|ref|YP_005259205.1|	-	0.019	15.0	0.0	0.034	14.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SgrR_N	PF12793.2	gi|379003533|ref|YP_005259205.1|	-	0.02	14.8	0.0	0.036	14.0	0.0	1.3	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_Crp_2	PF13545.1	gi|379003533|ref|YP_005259205.1|	-	0.025	14.3	0.0	0.049	13.4	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_42	PF06224.7	gi|379003533|ref|YP_005259205.1|	-	0.025	13.9	0.0	0.032	13.5	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Replic_Relax	PF13814.1	gi|379003533|ref|YP_005259205.1|	-	0.026	14.3	0.0	0.041	13.7	0.0	1.3	1	0	0	1	1	1	0	Replication-relaxation
Sigma70_r4	PF04545.11	gi|379003533|ref|YP_005259205.1|	-	0.11	11.8	0.1	0.29	10.4	0.0	1.8	1	1	0	1	1	1	0	Sigma-70,	region	4
HrcA_DNA-bdg	PF03444.10	gi|379003533|ref|YP_005259205.1|	-	0.13	11.6	0.0	0.37	10.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
HSP20	PF00011.16	gi|379003534|ref|YP_005259206.1|	-	1.5e-11	44.0	0.4	1.7e-10	40.6	0.1	2.3	2	1	0	2	2	2	1	Hsp20/alpha	crystallin	family
PIH1	PF08190.7	gi|379003534|ref|YP_005259206.1|	-	0.034	13.5	0.0	0.038	13.4	0.0	1.1	1	0	0	1	1	1	0	pre-RNA	processing	PIH1/Nop17
DUF104	PF01954.11	gi|379003534|ref|YP_005259206.1|	-	0.81	9.7	5.0	11	6.1	0.3	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	DUF104
BPD_transp_2	PF02653.11	gi|379003535|ref|YP_005259207.1|	-	2.1e-40	138.4	30.1	2.6e-40	138.0	20.9	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
FecCD	PF01032.13	gi|379003535|ref|YP_005259207.1|	-	0.0011	17.8	14.8	0.0064	15.3	9.9	2.1	1	1	1	2	2	2	1	FecCD	transport	family
BPD_transp_2	PF02653.11	gi|379003536|ref|YP_005259208.1|	-	1.1e-41	142.6	27.2	1.1e-41	142.6	18.9	2.0	2	0	0	2	2	2	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC2_membrane_3	PF12698.2	gi|379003536|ref|YP_005259208.1|	-	3.3	6.6	20.6	2.2	7.2	12.5	2.1	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|379003537|ref|YP_005259209.1|	-	1.3e-40	138.9	0.0	9e-32	110.2	0.0	2.4	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|379003537|ref|YP_005259209.1|	-	6.9e-09	36.0	0.0	0.00019	21.5	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|379003537|ref|YP_005259209.1|	-	9.8e-06	24.8	0.1	0.016	14.2	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|379003537|ref|YP_005259209.1|	-	0.0045	16.4	0.3	1.1	8.6	0.0	3.2	3	0	0	3	3	3	1	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|379003537|ref|YP_005259209.1|	-	0.0078	15.9	0.1	0.42	10.4	0.0	2.8	2	0	0	2	2	2	1	Part	of	AAA	domain
UPF0079	PF02367.12	gi|379003537|ref|YP_005259209.1|	-	0.0085	15.7	0.1	0.018	14.7	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_29	PF13555.1	gi|379003537|ref|YP_005259209.1|	-	0.0091	15.5	0.0	0.028	13.9	0.0	1.8	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|379003537|ref|YP_005259209.1|	-	0.014	15.3	0.0	0.76	9.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|379003537|ref|YP_005259209.1|	-	0.015	14.7	0.5	0.089	12.1	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
Bac_DnaA	PF00308.13	gi|379003537|ref|YP_005259209.1|	-	0.021	14.4	0.0	0.19	11.3	0.0	2.2	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_23	PF13476.1	gi|379003537|ref|YP_005259209.1|	-	0.036	14.4	0.2	0.068	13.4	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|379003537|ref|YP_005259209.1|	-	0.037	14.0	0.1	0.2	11.6	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
DUF258	PF03193.11	gi|379003537|ref|YP_005259209.1|	-	0.055	12.6	0.1	0.12	11.5	0.0	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function,	DUF258
eRF1_3	PF03465.10	gi|379003537|ref|YP_005259209.1|	-	0.059	13.6	0.0	0.46	10.7	0.0	2.2	2	0	0	2	2	2	0	eRF1	domain	3
NACHT	PF05729.7	gi|379003537|ref|YP_005259209.1|	-	0.07	12.7	0.1	0.16	11.6	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
AAA_22	PF13401.1	gi|379003537|ref|YP_005259209.1|	-	0.08	13.0	0.4	0.35	10.9	0.0	2.2	3	0	0	3	3	2	0	AAA	domain
SRP54	PF00448.17	gi|379003537|ref|YP_005259209.1|	-	0.1	12.0	0.2	0.22	10.9	0.1	1.6	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_13	PF13166.1	gi|379003537|ref|YP_005259209.1|	-	0.14	10.6	0.0	0.2	10.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379003537|ref|YP_005259209.1|	-	0.15	11.4	0.0	1.7	8.0	0.0	2.3	3	0	0	3	3	3	0	AAA-like	domain
SMC_N	PF02463.14	gi|379003537|ref|YP_005259209.1|	-	0.16	11.1	0.0	12	5.0	0.0	3.0	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|379003537|ref|YP_005259209.1|	-	0.83	8.1	4.3	16	3.9	0.0	3.4	3	1	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
Bmp	PF02608.9	gi|379003538|ref|YP_005259210.1|	-	4.1e-67	226.0	1.2	5.5e-67	225.6	0.8	1.1	1	0	0	1	1	1	1	Basic	membrane	protein
DUF2749	PF10907.3	gi|379003538|ref|YP_005259210.1|	-	0.027	14.3	0.5	0.068	13.0	0.4	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2749)
DUF929	PF06053.6	gi|379003538|ref|YP_005259210.1|	-	0.23	10.5	1.4	7.1	5.6	0.5	2.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF929)
Penicil_amidase	PF01804.13	gi|379003540|ref|YP_005259212.1|	-	2.5e-129	433.5	0.9	2.3e-128	430.3	0.6	2.0	1	1	0	1	1	1	1	Penicillin	amidase
Zn-ribbon_8	PF09723.5	gi|379003542|ref|YP_005259214.1|	-	0.0005	19.9	3.6	0.00085	19.2	2.5	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.14	gi|379003542|ref|YP_005259214.1|	-	0.0026	17.4	1.0	0.0033	17.1	0.7	1.3	1	1	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
TF_Zn_Ribbon	PF08271.7	gi|379003542|ref|YP_005259214.1|	-	0.0028	16.9	2.1	1	8.6	0.0	2.2	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-C2H2	PF00096.21	gi|379003542|ref|YP_005259214.1|	-	0.051	13.9	0.8	0.051	13.9	0.6	2.4	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Opy2	PF09463.5	gi|379003542|ref|YP_005259214.1|	-	0.052	13.6	0.8	5.1	7.2	0.3	2.2	2	0	0	2	2	2	0	Opy2	protein
CHAD	PF05235.9	gi|379003542|ref|YP_005259214.1|	-	0.055	13.0	0.1	0.062	12.8	0.1	1.1	1	0	0	1	1	1	0	CHAD	domain
zf-C2H2_4	PF13894.1	gi|379003542|ref|YP_005259214.1|	-	0.07	13.4	2.3	1.1	9.7	0.1	2.4	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2HC5	PF06221.8	gi|379003542|ref|YP_005259214.1|	-	0.072	12.8	0.2	0.11	12.2	0.2	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
TFIIS_C	PF01096.13	gi|379003542|ref|YP_005259214.1|	-	0.096	12.3	3.0	5.7	6.6	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.1	gi|379003542|ref|YP_005259214.1|	-	0.15	11.8	2.9	1.9	8.2	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|379003542|ref|YP_005259214.1|	-	0.19	11.4	4.5	0.85	9.3	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|379003542|ref|YP_005259214.1|	-	0.2	11.3	1.2	0.32	10.6	0.8	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-AN1	PF01428.11	gi|379003542|ref|YP_005259214.1|	-	0.32	10.9	3.7	1.7	8.5	0.1	2.2	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zinc_ribbon_5	PF13719.1	gi|379003542|ref|YP_005259214.1|	-	0.37	10.4	4.2	1.9	8.1	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003542|ref|YP_005259214.1|	-	0.38	10.0	2.4	9.4	5.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|379003542|ref|YP_005259214.1|	-	0.39	10.5	3.5	1.3	8.9	2.5	1.6	1	1	1	2	2	2	0	Double	zinc	ribbon
Zn_Tnp_IS1595	PF12760.2	gi|379003542|ref|YP_005259214.1|	-	0.49	10.2	3.8	10	6.0	0.5	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|379003542|ref|YP_005259214.1|	-	0.5	10.7	5.1	0.61	10.4	0.0	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
Rubredoxin	PF00301.15	gi|379003542|ref|YP_005259214.1|	-	0.66	9.8	4.3	14	5.6	3.0	2.2	1	1	0	1	1	1	0	Rubredoxin
PhnA_Zn_Ribbon	PF08274.7	gi|379003542|ref|YP_005259214.1|	-	2	8.2	4.1	1.2	8.9	0.8	1.9	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.1	gi|379003542|ref|YP_005259214.1|	-	6.7	6.3	6.9	35	4.0	4.8	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
Ribosomal_L40e	PF01020.12	gi|379003543|ref|YP_005259215.1|	-	7e-06	25.5	7.4	8e-06	25.3	5.1	1.1	1	0	0	1	1	1	1	Ribosomal	L40e	family
DZR	PF12773.2	gi|379003543|ref|YP_005259215.1|	-	0.00096	18.9	2.2	0.0011	18.7	1.5	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|379003543|ref|YP_005259215.1|	-	0.0011	18.4	2.9	0.0014	18.0	2.0	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|379003543|ref|YP_005259215.1|	-	0.0019	17.2	3.6	0.0024	16.9	2.5	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
zf-ribbon_3	PF13248.1	gi|379003543|ref|YP_005259215.1|	-	0.0025	16.9	3.3	0.0033	16.5	2.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|379003543|ref|YP_005259215.1|	-	0.02	14.8	0.9	0.025	14.5	0.6	1.2	1	0	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.14	gi|379003543|ref|YP_005259215.1|	-	0.074	12.7	0.5	0.075	12.7	0.4	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-DHHC	PF01529.15	gi|379003543|ref|YP_005259215.1|	-	0.15	11.4	2.1	0.15	11.4	1.4	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Fer4_2	PF12797.2	gi|379003543|ref|YP_005259215.1|	-	0.16	11.9	1.4	14	5.8	0.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
XPA_N	PF01286.13	gi|379003543|ref|YP_005259215.1|	-	0.18	11.4	2.0	2.1	8.0	0.1	2.1	2	0	0	2	2	2	0	XPA	protein	N-terminal
zf-RING_4	PF14570.1	gi|379003543|ref|YP_005259215.1|	-	0.79	9.3	4.7	1.1	8.9	3.3	1.2	1	0	0	1	1	1	0	RING/Ubox	like	zinc-binding	domain
DNA_RNApol_7kD	PF03604.8	gi|379003543|ref|YP_005259215.1|	-	6.5	6.3	9.5	23	4.5	5.1	2.6	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
AAA_17	PF13207.1	gi|379003544|ref|YP_005259216.1|	-	7e-05	23.6	0.2	0.0006	20.6	0.0	2.6	3	1	0	3	3	2	1	AAA	domain
TPR_6	PF13174.1	gi|379003544|ref|YP_005259216.1|	-	9.4e-05	22.6	0.3	0.048	14.1	0.2	3.6	3	0	0	3	3	3	1	Tetratricopeptide	repeat
AAA_29	PF13555.1	gi|379003544|ref|YP_005259216.1|	-	0.00059	19.3	0.0	0.0012	18.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
TPR_2	PF07719.12	gi|379003544|ref|YP_005259216.1|	-	0.00092	18.9	0.7	0.00092	18.9	0.5	2.7	2	0	0	2	2	2	1	Tetratricopeptide	repeat
AAA_22	PF13401.1	gi|379003544|ref|YP_005259216.1|	-	0.0014	18.7	0.0	0.0045	17.1	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003544|ref|YP_005259216.1|	-	0.0019	18.2	0.5	0.013	15.5	0.0	2.4	3	0	0	3	3	3	1	AAA	ATPase	domain
Apc3	PF12895.2	gi|379003544|ref|YP_005259216.1|	-	0.0052	16.8	0.6	0.015	15.4	0.1	2.1	2	0	0	2	2	1	1	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_12	PF13424.1	gi|379003544|ref|YP_005259216.1|	-	0.0063	16.4	3.4	0.0068	16.3	0.1	2.6	3	0	0	3	3	3	1	Tetratricopeptide	repeat
ABC_tran	PF00005.22	gi|379003544|ref|YP_005259216.1|	-	0.0073	16.6	0.0	0.014	15.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_18	PF13238.1	gi|379003544|ref|YP_005259216.1|	-	0.011	16.0	0.0	0.023	15.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379003544|ref|YP_005259216.1|	-	0.011	15.4	0.0	0.034	13.8	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
Sigma54_activ_2	PF14532.1	gi|379003544|ref|YP_005259216.1|	-	0.019	15.0	0.0	0.038	14.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|379003544|ref|YP_005259216.1|	-	0.023	14.4	0.6	0.064	13.0	0.1	2.1	2	0	0	2	2	1	0	Part	of	AAA	domain
TPR_11	PF13414.1	gi|379003544|ref|YP_005259216.1|	-	0.03	13.9	1.8	0.08	12.5	0.1	2.4	2	0	0	2	2	2	0	TPR	repeat
AAA_10	PF12846.2	gi|379003544|ref|YP_005259216.1|	-	0.045	13.1	0.1	0.16	11.4	0.0	2.0	1	1	0	1	1	1	0	AAA-like	domain
TPR_16	PF13432.1	gi|379003544|ref|YP_005259216.1|	-	0.05	14.3	1.6	0.05	14.3	1.1	2.7	3	0	0	3	3	1	0	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|379003544|ref|YP_005259216.1|	-	0.061	13.1	6.6	0.072	12.9	0.7	3.2	3	0	0	3	3	3	0	Tetratricopeptide	repeat
MobB	PF03205.9	gi|379003544|ref|YP_005259216.1|	-	0.08	12.6	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Paf67	PF10255.4	gi|379003544|ref|YP_005259216.1|	-	0.15	10.9	0.0	0.22	10.3	0.0	1.2	1	0	0	1	1	1	0	RNA	polymerase	I-associated	factor	PAF67
PhoH	PF02562.11	gi|379003544|ref|YP_005259216.1|	-	0.16	11.2	0.0	0.27	10.4	0.0	1.2	1	0	0	1	1	1	0	PhoH-like	protein
Sigma54_activat	PF00158.21	gi|379003544|ref|YP_005259216.1|	-	0.16	11.4	0.0	0.31	10.5	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
TPR_1	PF00515.23	gi|379003544|ref|YP_005259216.1|	-	0.32	10.6	2.9	0.24	11.0	0.3	2.1	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|379003544|ref|YP_005259216.1|	-	0.43	11.3	3.4	0.56	10.9	0.2	3.0	3	0	0	3	3	1	0	Tetratricopeptide	repeat
AATF-Che1	PF13339.1	gi|379003545|ref|YP_005259217.1|	-	0.0016	18.5	2.5	0.0031	17.6	0.3	2.3	1	1	1	2	2	2	1	Apoptosis	antagonizing	transcription	factor
Reo_sigmaC	PF04582.7	gi|379003545|ref|YP_005259217.1|	-	0.0026	16.9	20.9	0.0044	16.2	7.1	3.3	1	1	2	3	3	3	1	Reovirus	sigma	C	capsid	protein
FlaC_arch	PF05377.6	gi|379003545|ref|YP_005259217.1|	-	0.0056	16.5	1.1	0.21	11.4	0.2	3.6	2	1	1	3	3	3	1	Flagella	accessory	protein	C	(FlaC)
Myosin_tail_1	PF01576.14	gi|379003545|ref|YP_005259217.1|	-	0.0099	13.6	4.8	0.015	13.0	3.3	1.3	1	0	0	1	1	1	1	Myosin	tail
Spc7	PF08317.6	gi|379003545|ref|YP_005259217.1|	-	0.036	12.7	6.7	0.11	11.1	0.2	2.4	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Poty_PP	PF08440.5	gi|379003545|ref|YP_005259217.1|	-	0.058	12.4	2.8	1.6	7.7	0.0	2.6	2	1	0	2	2	2	0	Potyviridae	polyprotein
FliJ	PF02050.11	gi|379003545|ref|YP_005259217.1|	-	0.069	13.2	7.4	1.3	9.1	0.5	3.4	3	1	2	5	5	5	0	Flagellar	FliJ	protein
APG17	PF04108.7	gi|379003545|ref|YP_005259217.1|	-	0.12	11.0	5.5	0.37	9.5	3.8	1.7	1	1	0	1	1	1	0	Autophagy	protein	Apg17
COG2	PF06148.6	gi|379003545|ref|YP_005259217.1|	-	0.15	11.9	6.6	12	5.7	0.5	4.0	3	2	1	4	4	4	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
PMEI	PF04043.10	gi|379003545|ref|YP_005259217.1|	-	0.24	11.2	5.5	0.66	9.8	3.8	1.8	1	0	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
LXG	PF04740.7	gi|379003545|ref|YP_005259217.1|	-	0.38	10.5	3.2	1.7	8.4	0.5	2.8	2	1	0	2	2	2	0	LXG	domain	of	WXG	superfamily
DASH_Duo1	PF08651.5	gi|379003545|ref|YP_005259217.1|	-	0.42	10.2	3.6	7.8	6.1	0.2	3.7	3	1	1	4	4	4	0	DASH	complex	subunit	Duo1
Laminin_II	PF06009.7	gi|379003545|ref|YP_005259217.1|	-	0.76	9.5	12.4	4.8	6.9	0.9	4.0	2	1	2	4	4	4	0	Laminin	Domain	II
Tropomyosin	PF00261.15	gi|379003545|ref|YP_005259217.1|	-	0.86	8.6	4.9	0.4	9.7	0.2	2.5	2	1	1	3	3	3	0	Tropomyosin
Vps5	PF09325.5	gi|379003545|ref|YP_005259217.1|	-	1.7	7.8	7.7	0.25	10.5	1.7	2.3	2	1	1	3	3	3	0	Vps5	C	terminal	like
ABC_tran	PF00005.22	gi|379003546|ref|YP_005259218.1|	-	1.5e-33	116.0	0.0	1.9e-33	115.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003546|ref|YP_005259218.1|	-	2.6e-14	53.8	0.0	1.6e-08	34.8	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|379003546|ref|YP_005259218.1|	-	2.9e-06	27.3	0.1	6.1e-06	26.3	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|379003546|ref|YP_005259218.1|	-	2.2e-05	23.8	0.1	0.0053	16.0	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379003546|ref|YP_005259218.1|	-	0.00014	21.2	0.2	0.00028	20.3	0.1	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|379003546|ref|YP_005259218.1|	-	0.00056	19.1	0.1	0.00094	18.3	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|379003546|ref|YP_005259218.1|	-	0.00057	19.4	0.0	0.0055	16.1	0.0	2.0	2	0	0	2	2	2	1	AAA-like	domain
AAA_19	PF13245.1	gi|379003546|ref|YP_005259218.1|	-	0.00069	19.3	1.8	0.0014	18.3	0.2	2.2	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA	PF00004.24	gi|379003546|ref|YP_005259218.1|	-	0.00077	19.6	0.0	0.0039	17.3	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379003546|ref|YP_005259218.1|	-	0.00079	19.5	0.1	0.0054	16.8	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
cobW	PF02492.14	gi|379003546|ref|YP_005259218.1|	-	0.0028	17.1	0.1	0.0049	16.3	0.1	1.4	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_15	PF13175.1	gi|379003546|ref|YP_005259218.1|	-	0.0029	16.7	0.0	0.84	8.6	0.0	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|379003546|ref|YP_005259218.1|	-	0.0052	16.5	0.0	0.034	13.8	0.0	2.0	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_17	PF13207.1	gi|379003546|ref|YP_005259218.1|	-	0.006	17.3	0.0	0.014	16.2	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|379003546|ref|YP_005259218.1|	-	0.006	16.5	0.1	0.021	14.7	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|379003546|ref|YP_005259218.1|	-	0.0074	16.5	0.0	0.014	15.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|379003546|ref|YP_005259218.1|	-	0.0094	15.6	0.0	0.018	14.6	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
T2SE	PF00437.15	gi|379003546|ref|YP_005259218.1|	-	0.011	14.7	0.1	0.017	14.0	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.1	gi|379003546|ref|YP_005259218.1|	-	0.011	15.3	0.1	0.023	14.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|379003546|ref|YP_005259218.1|	-	0.016	15.1	0.0	0.05	13.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
RuvB_N	PF05496.7	gi|379003546|ref|YP_005259218.1|	-	0.016	14.2	0.1	0.033	13.2	0.1	1.5	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_33	PF13671.1	gi|379003546|ref|YP_005259218.1|	-	0.018	14.9	0.0	0.045	13.6	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|379003546|ref|YP_005259218.1|	-	0.033	13.5	0.2	0.055	12.8	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379003546|ref|YP_005259218.1|	-	0.036	13.2	0.1	0.092	11.8	0.1	1.6	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|379003546|ref|YP_005259218.1|	-	0.043	13.2	0.1	0.54	9.6	0.1	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Gtr1_RagA	PF04670.7	gi|379003546|ref|YP_005259218.1|	-	0.048	12.7	0.0	0.069	12.2	0.0	1.3	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
SRP54	PF00448.17	gi|379003546|ref|YP_005259218.1|	-	0.054	12.9	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
PduV-EutP	PF10662.4	gi|379003546|ref|YP_005259218.1|	-	0.055	12.9	0.0	0.11	11.9	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
UPF0079	PF02367.12	gi|379003546|ref|YP_005259218.1|	-	0.064	12.8	0.0	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_5	PF07728.9	gi|379003546|ref|YP_005259218.1|	-	0.071	12.8	0.0	0.18	11.5	0.0	1.7	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|379003546|ref|YP_005259218.1|	-	0.072	12.8	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_23	PF13476.1	gi|379003546|ref|YP_005259218.1|	-	0.072	13.4	0.1	0.13	12.5	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|379003546|ref|YP_005259218.1|	-	0.1	11.3	0.0	0.35	9.6	0.0	1.8	1	1	0	1	1	1	0	NB-ARC	domain
Miro	PF08477.8	gi|379003546|ref|YP_005259218.1|	-	0.12	12.9	0.0	0.21	12.0	0.0	1.7	1	1	0	1	1	1	0	Miro-like	protein
SbcCD_C	PF13558.1	gi|379003546|ref|YP_005259218.1|	-	0.12	12.3	0.0	0.27	11.1	0.0	1.6	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Cuticle_1	PF08140.6	gi|379003546|ref|YP_005259218.1|	-	0.13	12.1	0.1	0.32	10.8	0.1	1.7	1	0	0	1	1	1	0	Crustacean	cuticle	protein	repeat
Adeno_IVa2	PF02456.10	gi|379003546|ref|YP_005259218.1|	-	0.13	10.8	0.0	0.18	10.4	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
Zeta_toxin	PF06414.7	gi|379003546|ref|YP_005259218.1|	-	0.15	11.1	0.3	0.31	10.1	0.0	1.6	2	0	0	2	2	2	0	Zeta	toxin
FtsX	PF02687.16	gi|379003547|ref|YP_005259219.1|	-	2.5e-19	69.2	15.3	4.3e-19	68.4	7.1	2.3	2	0	0	2	2	2	2	FtsX-like	permease	family
MacB_PCD	PF12704.2	gi|379003547|ref|YP_005259219.1|	-	7.5e-19	68.2	1.4	7.5e-19	68.2	0.9	2.0	2	1	1	3	3	3	1	MacB-like	periplasmic	core	domain
TF_Zn_Ribbon	PF08271.7	gi|379003548|ref|YP_005259220.1|	-	3.7e-06	26.1	1.3	6.1e-06	25.4	0.9	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
TFIIB	PF00382.14	gi|379003548|ref|YP_005259220.1|	-	0.00027	20.6	1.1	0.00035	20.3	0.2	1.6	2	0	0	2	2	2	1	Transcription	factor	TFIIB	repeat
A2L_zn_ribbon	PF08792.5	gi|379003548|ref|YP_005259220.1|	-	0.0014	18.0	0.7	0.0022	17.3	0.5	1.3	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
DUF35_N	PF12172.3	gi|379003548|ref|YP_005259220.1|	-	0.0045	16.8	3.9	1.4	8.9	0.4	2.7	2	0	0	2	2	2	2	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
OrfB_Zn_ribbon	PF07282.6	gi|379003548|ref|YP_005259220.1|	-	0.017	14.7	0.2	0.037	13.6	0.1	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|379003548|ref|YP_005259220.1|	-	0.035	14.0	0.1	1.5	8.8	0.0	2.5	2	1	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Zn-ribbon_8	PF09723.5	gi|379003548|ref|YP_005259220.1|	-	0.058	13.3	0.3	7.6	6.5	0.0	2.5	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-Mss51	PF13824.1	gi|379003548|ref|YP_005259220.1|	-	0.11	12.3	1.1	0.2	11.5	0.7	1.4	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.1	gi|379003548|ref|YP_005259220.1|	-	0.82	8.9	3.3	2.4	7.4	2.2	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
RRN7	PF11781.3	gi|379003548|ref|YP_005259220.1|	-	0.93	9.0	4.8	2.6	7.6	3.3	1.8	1	1	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-C2H2_4	PF13894.1	gi|379003548|ref|YP_005259220.1|	-	1.4	9.4	3.7	26	5.4	0.0	3.0	3	0	0	3	3	3	0	C2H2-type	zinc	finger
DEAD_assoc	PF08494.6	gi|379003550|ref|YP_005259222.1|	-	0.054	13.2	0.0	0.1	12.2	0.0	1.4	1	0	0	1	1	1	0	DEAD/H	associated
DUF262	PF03235.9	gi|379003554|ref|YP_005259226.1|	-	3e-08	33.9	0.0	4.5e-05	23.5	0.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF262
UBA	PF00627.26	gi|379003558|ref|YP_005259230.1|	-	0.018	14.8	1.0	0.043	13.6	0.0	2.0	2	0	0	2	2	2	0	UBA/TS-N	domain
ELYS	PF13934.1	gi|379003560|ref|YP_005259232.1|	-	0.03	14.0	0.1	0.036	13.8	0.1	1.1	1	0	0	1	1	1	0	Nuclear	pore	complex	assembly
CbiA	PF01656.18	gi|379003561|ref|YP_005259233.1|	-	1.5e-06	27.7	0.0	4e-06	26.3	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_18	PF13238.1	gi|379003561|ref|YP_005259233.1|	-	0.019	15.3	0.0	0.085	13.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_31	PF13614.1	gi|379003561|ref|YP_005259233.1|	-	0.051	13.5	0.0	0.12	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
DEAD	PF00270.24	gi|379003561|ref|YP_005259233.1|	-	0.056	12.9	0.0	0.078	12.4	0.0	1.2	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
Glyco_hydro_8	PF01270.12	gi|379003561|ref|YP_005259233.1|	-	0.097	11.3	0.1	0.13	10.9	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolases	family	8
ArsA_ATPase	PF02374.10	gi|379003561|ref|YP_005259233.1|	-	0.1	11.5	0.5	0.28	10.1	0.0	1.8	2	0	0	2	2	2	0	Anion-transporting	ATPase
T2SE	PF00437.15	gi|379003562|ref|YP_005259234.1|	-	2.5e-11	42.9	0.0	4e-11	42.3	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_28	PF13521.1	gi|379003562|ref|YP_005259234.1|	-	0.003	17.5	0.1	0.0098	15.8	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379003562|ref|YP_005259234.1|	-	0.034	14.2	0.0	0.065	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Birna_VP2	PF01766.12	gi|379003562|ref|YP_005259234.1|	-	0.067	12.1	0.0	0.1	11.4	0.0	1.2	1	0	0	1	1	1	0	Birnavirus	VP2	protein
TrwB_AAD_bind	PF10412.4	gi|379003562|ref|YP_005259234.1|	-	0.091	11.3	0.0	0.16	10.5	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
HTH_10	PF04967.7	gi|379003564|ref|YP_005259236.1|	-	0.016	14.7	0.1	1.4	8.5	0.0	3.0	3	0	0	3	3	3	0	HTH	DNA	binding	domain
Fe_dep_repress	PF01325.14	gi|379003564|ref|YP_005259236.1|	-	0.027	14.3	0.1	2.5	8.1	0.0	2.8	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Cro	PF09048.5	gi|379003564|ref|YP_005259236.1|	-	0.11	12.1	0.1	0.87	9.2	0.0	2.1	2	0	0	2	2	2	0	Cro
DUF1233	PF06806.7	gi|379003564|ref|YP_005259236.1|	-	0.12	11.9	0.2	0.19	11.2	0.1	1.4	1	1	0	1	1	1	0	Putative	excisionase	(DUF1233)
DUF1673	PF07895.6	gi|379003565|ref|YP_005259237.1|	-	0.096	12.2	0.8	3.6	7.0	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1673)
Big_5	PF13205.1	gi|379003566|ref|YP_005259238.1|	-	0.012	16.1	0.0	0.016	15.8	0.0	1.3	1	1	0	1	1	1	0	Bacterial	Ig-like	domain
FabA	PF07977.8	gi|379003566|ref|YP_005259238.1|	-	0.051	13.0	0.0	0.098	12.1	0.0	1.4	1	0	0	1	1	1	0	FabA-like	domain
Class_IIIsignal	PF04021.7	gi|379003566|ref|YP_005259238.1|	-	0.36	10.6	3.0	0.84	9.4	2.1	1.6	1	0	0	1	1	1	0	Class	III	signal	peptide
GAS	PF13851.1	gi|379003567|ref|YP_005259239.1|	-	9.2e-06	24.9	16.5	1.4e-05	24.3	11.4	1.2	1	0	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
Myosin_tail_1	PF01576.14	gi|379003567|ref|YP_005259239.1|	-	1.3e-05	23.1	15.5	2e-05	22.5	10.7	1.2	1	0	0	1	1	1	1	Myosin	tail
DUF972	PF06156.8	gi|379003567|ref|YP_005259239.1|	-	0.00021	21.5	12.6	0.0075	16.6	1.2	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF972)
ERM	PF00769.14	gi|379003567|ref|YP_005259239.1|	-	0.00021	20.9	15.5	0.00028	20.4	10.7	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
CENP-F_leu_zip	PF10473.4	gi|379003567|ref|YP_005259239.1|	-	0.00023	21.0	16.8	0.001	18.9	2.4	2.3	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Tropomyosin_1	PF12718.2	gi|379003567|ref|YP_005259239.1|	-	0.00027	20.7	19.6	0.0017	18.1	10.0	2.2	1	1	1	2	2	2	2	Tropomyosin	like
Reo_sigmaC	PF04582.7	gi|379003567|ref|YP_005259239.1|	-	0.0011	18.2	4.4	0.0016	17.6	3.0	1.2	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
zf-C4H2	PF10146.4	gi|379003567|ref|YP_005259239.1|	-	0.002	18.2	2.8	0.0026	17.8	1.9	1.1	1	0	0	1	1	1	1	Zinc	finger-containing	protein
DUF869	PF05911.6	gi|379003567|ref|YP_005259239.1|	-	0.0025	16.1	10.9	0.0035	15.6	7.6	1.2	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
Spc7	PF08317.6	gi|379003567|ref|YP_005259239.1|	-	0.0057	15.3	9.0	0.011	14.3	6.2	1.4	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Metal_resist	PF13801.1	gi|379003567|ref|YP_005259239.1|	-	0.0068	16.3	9.2	0.0068	16.3	6.4	2.8	3	0	0	3	3	2	1	Heavy-metal	resistance
Filament	PF00038.16	gi|379003567|ref|YP_005259239.1|	-	0.0075	15.7	17.0	0.029	13.8	11.5	1.7	1	1	1	2	2	2	2	Intermediate	filament	protein
DUF724	PF05266.9	gi|379003567|ref|YP_005259239.1|	-	0.0082	15.7	8.1	0.0082	15.7	5.6	1.8	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF724)
Rootletin	PF15035.1	gi|379003567|ref|YP_005259239.1|	-	0.0092	15.9	17.6	0.022	14.7	11.6	1.8	1	1	0	1	1	1	1	Ciliary	rootlet	component,	centrosome	cohesion
FUSC	PF04632.7	gi|379003567|ref|YP_005259239.1|	-	0.011	14.1	12.9	0.02	13.3	9.0	1.4	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
APG6	PF04111.7	gi|379003567|ref|YP_005259239.1|	-	0.017	14.1	16.0	0.028	13.4	11.1	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
HGD-D	PF06050.8	gi|379003567|ref|YP_005259239.1|	-	0.02	13.7	0.9	0.029	13.2	0.1	1.6	2	0	0	2	2	1	0	2-hydroxyglutaryl-CoA	dehydratase,	D-component
Exonuc_VII_L	PF02601.10	gi|379003567|ref|YP_005259239.1|	-	0.022	13.9	7.7	0.03	13.5	5.3	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
TPR_MLP1_2	PF07926.7	gi|379003567|ref|YP_005259239.1|	-	0.024	14.4	25.3	0.068	12.9	5.2	2.3	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
FH2	PF02181.18	gi|379003567|ref|YP_005259239.1|	-	0.029	13.2	6.9	0.014	14.2	3.0	1.5	1	1	1	2	2	2	0	Formin	Homology	2	Domain
Fez1	PF06818.10	gi|379003567|ref|YP_005259239.1|	-	0.029	14.3	15.0	0.05	13.6	10.4	1.3	1	0	0	1	1	1	0	Fez1
ATG16	PF08614.6	gi|379003567|ref|YP_005259239.1|	-	0.031	14.0	16.6	0.058	13.2	11.2	1.6	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF2408	PF10303.4	gi|379003567|ref|YP_005259239.1|	-	0.032	14.3	9.0	1.4	9.0	0.7	2.6	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2408)
DUF2353	PF09789.4	gi|379003567|ref|YP_005259239.1|	-	0.034	13.3	8.2	0.052	12.8	5.7	1.2	1	0	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF3461	PF11944.3	gi|379003567|ref|YP_005259239.1|	-	0.036	13.8	1.1	0.072	12.9	0.5	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3461)
BLOC1_2	PF10046.4	gi|379003567|ref|YP_005259239.1|	-	0.045	13.8	10.9	0.14	12.2	1.4	2.6	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
ADIP	PF11559.3	gi|379003567|ref|YP_005259239.1|	-	0.05	13.5	23.2	0.17	11.7	9.9	2.1	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
V_ATPase_I	PF01496.14	gi|379003567|ref|YP_005259239.1|	-	0.06	11.2	2.5	0.099	10.4	1.8	1.4	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
AAA_13	PF13166.1	gi|379003567|ref|YP_005259239.1|	-	0.065	11.6	9.4	0.11	10.8	6.5	1.3	1	0	0	1	1	1	0	AAA	domain
DUF641	PF04859.7	gi|379003567|ref|YP_005259239.1|	-	0.11	12.2	15.0	0.039	13.7	6.8	2.1	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF641)
CALCOCO1	PF07888.6	gi|379003567|ref|YP_005259239.1|	-	0.11	10.7	13.2	0.31	9.2	9.1	1.6	1	1	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Fes1	PF08609.5	gi|379003567|ref|YP_005259239.1|	-	0.11	12.9	5.1	0.29	11.6	3.5	1.6	1	1	1	2	2	1	0	Nucleotide	exchange	factor	Fes1
FlaC_arch	PF05377.6	gi|379003567|ref|YP_005259239.1|	-	0.12	12.3	2.1	14	5.6	0.1	3.6	2	1	1	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Cluap1	PF10234.4	gi|379003567|ref|YP_005259239.1|	-	0.12	11.5	14.2	0.29	10.3	9.9	1.5	1	1	0	1	1	1	0	Clusterin-associated	protein-1
DUF2400	PF09674.5	gi|379003567|ref|YP_005259239.1|	-	0.13	11.9	5.6	0.86	9.2	0.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
bZIP_1	PF00170.16	gi|379003567|ref|YP_005259239.1|	-	0.15	12.0	13.9	1.4	8.9	2.0	3.4	3	0	0	3	3	3	0	bZIP	transcription	factor
TMF_DNA_bd	PF12329.3	gi|379003567|ref|YP_005259239.1|	-	0.16	11.8	26.3	0.03	14.1	7.6	2.3	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
IncA	PF04156.9	gi|379003567|ref|YP_005259239.1|	-	0.18	11.4	28.7	0.37	10.3	14.8	3.3	3	1	0	3	3	2	0	IncA	protein
HOOK	PF05622.7	gi|379003567|ref|YP_005259239.1|	-	0.18	9.5	16.1	0.25	9.1	11.2	1.1	1	0	0	1	1	1	0	HOOK	protein
DUF342	PF03961.8	gi|379003567|ref|YP_005259239.1|	-	0.22	9.9	8.7	0.31	9.4	6.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
Seryl_tRNA_N	PF02403.17	gi|379003567|ref|YP_005259239.1|	-	0.22	11.5	17.8	0.11	12.4	3.9	2.3	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Med10	PF09748.4	gi|379003567|ref|YP_005259239.1|	-	0.25	11.1	4.0	0.59	9.9	2.8	1.7	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
TBPIP	PF07106.8	gi|379003567|ref|YP_005259239.1|	-	0.27	10.7	12.8	0.47	9.9	3.4	2.1	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
CENP-F_N	PF10481.4	gi|379003567|ref|YP_005259239.1|	-	0.31	10.3	14.1	0.11	11.7	7.5	1.7	1	1	1	2	2	2	0	Cenp-F	N-terminal	domain
DUF812	PF05667.6	gi|379003567|ref|YP_005259239.1|	-	0.35	9.3	14.9	0.45	8.9	10.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
CCDC144C	PF14915.1	gi|379003567|ref|YP_005259239.1|	-	0.36	9.7	16.8	0.48	9.2	11.6	1.1	1	0	0	1	1	1	0	CCDC144C	protein	coiled-coil	region
Atg14	PF10186.4	gi|379003567|ref|YP_005259239.1|	-	0.38	9.6	18.2	0.52	9.1	12.6	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FlxA	PF14282.1	gi|379003567|ref|YP_005259239.1|	-	0.38	10.7	25.6	0.61	10.0	8.7	2.3	1	1	1	2	2	2	0	FlxA-like	protein
ALIX_LYPXL_bnd	PF13949.1	gi|379003567|ref|YP_005259239.1|	-	0.42	9.5	16.0	0.94	8.3	11.1	1.5	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
DUF3584	PF12128.3	gi|379003567|ref|YP_005259239.1|	-	0.51	7.6	20.6	0.82	6.9	14.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
PMEI	PF04043.10	gi|379003567|ref|YP_005259239.1|	-	0.51	10.2	6.5	0.94	9.3	4.5	1.4	1	0	0	1	1	1	0	Plant	invertase/pectin	methylesterase	inhibitor
Tropomyosin	PF00261.15	gi|379003567|ref|YP_005259239.1|	-	0.51	9.3	18.9	0.89	8.5	3.4	2.1	1	1	1	2	2	2	0	Tropomyosin
DUF1664	PF07889.7	gi|379003567|ref|YP_005259239.1|	-	0.54	10.0	6.9	1.1	9.0	3.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Prefoldin	PF02996.12	gi|379003567|ref|YP_005259239.1|	-	0.62	9.7	16.9	0.033	13.8	2.5	3.3	1	1	2	3	3	3	0	Prefoldin	subunit
Bap31	PF05529.7	gi|379003567|ref|YP_005259239.1|	-	0.63	9.4	11.3	1.3	8.4	6.9	1.9	1	1	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
Baculo_PEP_C	PF04513.7	gi|379003567|ref|YP_005259239.1|	-	0.63	9.8	16.3	0.96	9.2	4.3	2.2	1	1	1	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Striatin	PF08232.7	gi|379003567|ref|YP_005259239.1|	-	0.64	10.3	12.9	1.3	9.3	8.4	1.9	1	1	1	2	2	2	0	Striatin	family
Prefoldin_2	PF01920.15	gi|379003567|ref|YP_005259239.1|	-	0.75	9.5	18.1	0.054	13.2	1.1	3.6	1	1	3	4	4	4	0	Prefoldin	subunit
Mnd1	PF03962.10	gi|379003567|ref|YP_005259239.1|	-	0.75	9.4	16.4	2.2	7.8	8.8	2.2	1	1	1	2	2	2	0	Mnd1	family
CorA	PF01544.13	gi|379003567|ref|YP_005259239.1|	-	0.8	8.6	5.6	1.2	8.0	3.8	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Syntaxin-6_N	PF09177.6	gi|379003567|ref|YP_005259239.1|	-	0.91	9.9	9.1	0.83	10.0	0.6	2.9	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
CENP-Q	PF13094.1	gi|379003567|ref|YP_005259239.1|	-	1.1	9.2	23.2	11	6.0	16.3	2.0	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF1515	PF07439.6	gi|379003567|ref|YP_005259239.1|	-	1.2	8.9	4.3	1.4	8.7	1.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
Tektin	PF03148.9	gi|379003567|ref|YP_005259239.1|	-	1.3	7.5	16.3	0.14	10.7	2.8	2.1	1	1	1	2	2	2	0	Tektin	family
Phlebovirus_NSM	PF07246.6	gi|379003567|ref|YP_005259239.1|	-	1.3	8.1	5.0	1.7	7.7	2.3	1.8	1	1	1	2	2	2	0	Phlebovirus	nonstructural	protein	NS-M
UPF0242	PF06785.6	gi|379003567|ref|YP_005259239.1|	-	1.3	7.5	10.3	1.9	7.0	7.1	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0242)
Orbi_VP5	PF00901.12	gi|379003567|ref|YP_005259239.1|	-	1.4	7.0	7.3	1.8	6.6	5.1	1.1	1	0	0	1	1	1	0	Orbivirus	outer	capsid	protein	VP5
DUF1635	PF07795.6	gi|379003567|ref|YP_005259239.1|	-	1.4	8.2	7.9	3	7.1	5.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1635)
IFT57	PF10498.4	gi|379003567|ref|YP_005259239.1|	-	1.5	7.5	10.3	2.3	6.8	7.2	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
DUF4446	PF14584.1	gi|379003567|ref|YP_005259239.1|	-	1.5	8.6	8.1	2.5	7.9	2.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
DUF1470	PF07336.6	gi|379003567|ref|YP_005259239.1|	-	1.6	9.0	14.0	11	6.3	9.6	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1470)
Nsp1_C	PF05064.8	gi|379003567|ref|YP_005259239.1|	-	1.7	8.3	12.2	0.96	9.1	2.0	2.3	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
DOG1	PF14144.1	gi|379003567|ref|YP_005259239.1|	-	1.8	8.6	11.2	7.9	6.5	1.6	3.0	2	1	0	2	2	2	0	Seed	dormancy	control
Sipho_Gp157	PF05565.6	gi|379003567|ref|YP_005259239.1|	-	1.9	8.0	11.1	3.3	7.2	6.0	2.0	1	1	1	2	2	2	0	Siphovirus	Gp157
Apt1	PF10351.4	gi|379003567|ref|YP_005259239.1|	-	2.1	7.1	5.4	2.8	6.7	3.8	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
MscS_porin	PF12795.2	gi|379003567|ref|YP_005259239.1|	-	2.2	7.5	36.0	4.8	6.4	25.0	1.5	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
CDC37_N	PF03234.9	gi|379003567|ref|YP_005259239.1|	-	2.5	8.3	6.8	3.6	7.8	4.7	1.2	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF4164	PF13747.1	gi|379003567|ref|YP_005259239.1|	-	2.6	8.2	19.2	2.1	8.5	10.3	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4164)
DUF4140	PF13600.1	gi|379003567|ref|YP_005259239.1|	-	2.6	8.5	25.8	10	6.6	3.5	3.6	1	1	3	4	4	4	0	N-terminal	domain	of	unknown	function	(DUF4140)
Peptidase_S46	PF10459.4	gi|379003567|ref|YP_005259239.1|	-	2.6	6.3	12.6	4	5.7	8.8	1.2	1	0	0	1	1	1	0	Peptidase	S46
Cep57_CLD_2	PF14197.1	gi|379003567|ref|YP_005259239.1|	-	2.8	7.9	23.8	9.1	6.3	0.4	3.2	2	1	1	3	3	2	0	Centrosome	localisation	domain	of	PPC89
Herpes_UL6	PF01763.11	gi|379003567|ref|YP_005259239.1|	-	2.9	5.9	8.0	5.6	5.0	4.0	1.9	1	1	1	2	2	2	0	Herpesvirus	UL6	like
NYD-SP28	PF14772.1	gi|379003567|ref|YP_005259239.1|	-	3.8	7.6	15.8	0.19	11.8	2.0	2.9	1	1	2	3	3	3	0	Sperm	tail
Kinetocho_Slk19	PF12709.2	gi|379003567|ref|YP_005259239.1|	-	4.4	7.4	11.9	4.4	7.4	0.5	3.4	1	1	3	4	4	4	0	Central	kinetochore-associated
DUF4200	PF13863.1	gi|379003567|ref|YP_005259239.1|	-	4.4	7.2	19.1	2.7	7.9	3.1	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4200)
TnpV	PF14198.1	gi|379003567|ref|YP_005259239.1|	-	5.3	6.9	7.4	1.9	8.3	2.8	1.9	1	1	1	2	2	1	0	Transposon-encoded	protein	TnpV
COG2	PF06148.6	gi|379003567|ref|YP_005259239.1|	-	5.5	6.8	9.5	8.9	6.1	1.6	2.2	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Syntaxin	PF00804.20	gi|379003567|ref|YP_005259239.1|	-	5.8	7.1	14.0	6.4	6.9	4.7	2.3	1	1	1	2	2	2	0	Syntaxin
Fmp27_WPPW	PF10359.4	gi|379003567|ref|YP_005259239.1|	-	6	5.1	7.5	10	4.4	5.2	1.4	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Phage_GP20	PF06810.6	gi|379003567|ref|YP_005259239.1|	-	6.2	6.2	18.6	28	4.1	7.6	2.6	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
Fib_alpha	PF08702.5	gi|379003567|ref|YP_005259239.1|	-	6.3	6.9	10.1	24	5.0	7.0	1.9	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
NPV_P10	PF05531.7	gi|379003567|ref|YP_005259239.1|	-	8	6.7	14.0	1.6e+02	2.5	0.1	3.8	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
THOC7	PF05615.8	gi|379003567|ref|YP_005259239.1|	-	8.1	6.7	15.7	35	4.6	10.9	1.9	1	1	0	1	1	1	0	Tho	complex	subunit	7
Macoilin	PF09726.4	gi|379003567|ref|YP_005259239.1|	-	8.5	4.5	14.3	16	3.5	9.9	1.4	1	1	0	1	1	1	0	Transmembrane	protein
DUF2968	PF11180.3	gi|379003567|ref|YP_005259239.1|	-	8.9	5.6	28.5	52	3.1	19.6	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Jnk-SapK_ap_N	PF09744.4	gi|379003567|ref|YP_005259239.1|	-	9	6.2	10.5	16	5.4	2.3	2.4	1	1	1	2	2	2	0	JNK_SAPK-associated	protein-1
MAD	PF05557.8	gi|379003567|ref|YP_005259239.1|	-	9.3	4.2	20.1	28	2.6	14.0	1.6	1	1	0	1	1	1	0	Mitotic	checkpoint	protein
RHH_1	PF01402.16	gi|379003568|ref|YP_005259240.1|	-	6.6e-09	35.2	0.1	1.2e-08	34.5	0.1	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|379003568|ref|YP_005259240.1|	-	0.03	14.4	0.0	0.034	14.3	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0156)
PhdYeFM_antitox	PF02604.14	gi|379003568|ref|YP_005259240.1|	-	0.034	13.7	0.2	0.076	12.6	0.2	1.7	1	1	0	1	1	1	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
DUF632	PF04782.7	gi|379003569|ref|YP_005259241.1|	-	0.032	13.3	0.0	0.037	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF632)
TetR_C_7	PF14246.1	gi|379003577|ref|YP_005259249.1|	-	0.11	12.7	0.0	0.22	11.7	0.0	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	region
AAA_19	PF13245.1	gi|379003579|ref|YP_005259251.1|	-	3.4e-05	23.5	0.1	5.9e-05	22.7	0.1	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|379003579|ref|YP_005259251.1|	-	3.6e-05	23.8	0.0	5.7e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003579|ref|YP_005259251.1|	-	0.00068	20.4	0.0	0.00092	20.0	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379003579|ref|YP_005259251.1|	-	0.001	19.2	0.0	0.0016	18.6	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|379003579|ref|YP_005259251.1|	-	0.005	16.5	0.0	0.0063	16.2	0.0	1.3	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.11	gi|379003579|ref|YP_005259251.1|	-	0.0057	15.9	0.1	0.0079	15.4	0.1	1.2	1	0	0	1	1	1	1	PhoH-like	protein
AAA_33	PF13671.1	gi|379003579|ref|YP_005259251.1|	-	0.0074	16.1	0.6	0.029	14.2	0.4	2.2	1	1	0	1	1	1	1	AAA	domain
DUF2075	PF09848.4	gi|379003579|ref|YP_005259251.1|	-	0.011	14.7	0.0	0.014	14.4	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
KTI12	PF08433.5	gi|379003579|ref|YP_005259251.1|	-	0.012	14.8	0.0	0.016	14.4	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_18	PF13238.1	gi|379003579|ref|YP_005259251.1|	-	0.012	15.9	0.1	0.022	15.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|379003579|ref|YP_005259251.1|	-	0.017	14.5	0.1	0.024	14.0	0.0	1.2	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
CbiA	PF01656.18	gi|379003579|ref|YP_005259251.1|	-	0.022	14.1	2.4	0.3	10.4	0.1	2.1	1	1	1	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.1	gi|379003579|ref|YP_005259251.1|	-	0.027	14.4	0.0	0.03	14.3	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|379003579|ref|YP_005259251.1|	-	0.033	14.1	0.0	0.039	13.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379003579|ref|YP_005259251.1|	-	0.041	13.3	0.0	0.044	13.2	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
Mg_chelatase	PF01078.16	gi|379003579|ref|YP_005259251.1|	-	0.057	12.5	0.0	0.085	12.0	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
KaiC	PF06745.8	gi|379003579|ref|YP_005259251.1|	-	0.057	12.5	0.0	0.069	12.2	0.0	1.2	1	0	0	1	1	1	0	KaiC
Zeta_toxin	PF06414.7	gi|379003579|ref|YP_005259251.1|	-	0.089	11.8	0.0	0.11	11.5	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_25	PF13481.1	gi|379003579|ref|YP_005259251.1|	-	0.13	11.6	0.3	0.2	11.0	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|379003579|ref|YP_005259251.1|	-	0.13	12.0	0.2	0.2	11.3	0.1	1.5	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.1	gi|379003579|ref|YP_005259251.1|	-	0.15	11.6	0.0	0.23	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379003579|ref|YP_005259251.1|	-	0.15	12.2	0.0	0.24	11.6	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
DDE_5	PF13546.1	gi|379003580|ref|YP_005259252.1|	-	0.064	12.1	0.0	0.079	11.8	0.0	1.1	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
AAA_10	PF12846.2	gi|379003581|ref|YP_005259253.1|	-	3.8e-17	62.7	0.2	1.9e-07	30.8	0.0	2.3	2	0	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|379003581|ref|YP_005259253.1|	-	1.8e-10	41.0	0.2	5.3e-10	39.4	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
AAA_22	PF13401.1	gi|379003581|ref|YP_005259253.1|	-	1.8e-06	28.1	0.3	0.004	17.3	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379003581|ref|YP_005259253.1|	-	0.00012	21.6	0.0	0.00034	20.1	0.0	1.7	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
DUF853	PF05872.7	gi|379003581|ref|YP_005259253.1|	-	0.00051	18.5	0.1	0.1	10.9	0.1	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|379003581|ref|YP_005259253.1|	-	0.085	11.4	0.0	0.26	9.8	0.0	1.7	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_25	PF13481.1	gi|379003581|ref|YP_005259253.1|	-	0.085	12.2	0.0	0.39	10.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.10	gi|379003581|ref|YP_005259253.1|	-	0.19	11.5	0.0	0.91	9.3	0.0	1.9	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_10	PF12846.2	gi|379003584|ref|YP_005259256.1|	-	2.3e-09	37.1	0.2	2.4e-07	30.5	0.1	2.5	1	1	0	1	1	1	1	AAA-like	domain
AAA_22	PF13401.1	gi|379003584|ref|YP_005259256.1|	-	0.00016	21.8	0.2	0.07	13.2	0.1	2.5	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003584|ref|YP_005259256.1|	-	0.00045	20.2	0.0	0.0023	17.9	0.0	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
TrwB_AAD_bind	PF10412.4	gi|379003584|ref|YP_005259256.1|	-	0.028	13.0	0.0	0.43	9.1	0.0	2.0	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA	PF00004.24	gi|379003584|ref|YP_005259256.1|	-	0.054	13.7	0.0	0.55	10.4	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF2075	PF09848.4	gi|379003584|ref|YP_005259256.1|	-	0.079	11.9	0.0	7	5.5	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|379003584|ref|YP_005259256.1|	-	0.11	12.2	0.1	0.11	12.2	0.1	2.6	3	0	0	3	3	3	0	Part	of	AAA	domain
Zot	PF05707.7	gi|379003584|ref|YP_005259256.1|	-	0.15	11.5	0.0	6.6	6.1	0.0	2.2	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
DEAD	PF00270.24	gi|379003584|ref|YP_005259256.1|	-	0.15	11.4	0.0	0.95	8.9	0.0	2.0	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
SWIM	PF04434.12	gi|379003585|ref|YP_005259257.1|	-	3.1e-05	23.3	0.8	6.4e-05	22.3	0.6	1.4	1	0	0	1	1	1	1	SWIM	zinc	finger
RRN7	PF11781.3	gi|379003585|ref|YP_005259257.1|	-	0.55	9.7	6.6	0.15	11.5	2.1	1.8	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
EthD	PF07110.6	gi|379003586|ref|YP_005259258.1|	-	0.074	13.9	0.0	0.13	13.2	0.0	1.5	1	0	0	1	1	1	0	EthD	domain
Hemopexin	PF00045.14	gi|379003586|ref|YP_005259258.1|	-	0.13	12.0	0.1	0.49	10.1	0.0	2.0	2	0	0	2	2	2	0	Hemopexin
HTH_Tnp_4	PF13613.1	gi|379003587|ref|YP_005259259.1|	-	0.0053	16.2	0.0	0.02	14.3	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	of	DDE	superfamily	endonuclease
HTH_20	PF12840.2	gi|379003587|ref|YP_005259259.1|	-	0.015	15.0	0.0	0.15	11.8	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
LacI	PF00356.16	gi|379003587|ref|YP_005259259.1|	-	0.044	13.4	0.0	0.097	12.3	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
HTH_1	PF00126.22	gi|379003587|ref|YP_005259259.1|	-	0.05	13.3	0.0	0.091	12.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
GerE	PF00196.14	gi|379003587|ref|YP_005259259.1|	-	0.065	12.5	0.0	0.14	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
Spore_III_AF	PF09581.5	gi|379003587|ref|YP_005259259.1|	-	0.082	12.7	0.2	0.11	12.3	0.1	1.2	1	0	0	1	1	1	0	Stage	III	sporulation	protein	AF	(Spore_III_AF)
DUF1160	PF06648.6	gi|379003587|ref|YP_005259259.1|	-	0.084	12.6	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1160)
HTH_36	PF13730.1	gi|379003587|ref|YP_005259259.1|	-	0.088	12.9	0.0	0.2	11.8	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379003587|ref|YP_005259259.1|	-	0.1	12.3	1.3	0.13	11.9	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_ISL3	PF13542.1	gi|379003587|ref|YP_005259259.1|	-	0.11	11.6	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
zf-TAZ	PF02135.11	gi|379003587|ref|YP_005259259.1|	-	0.14	12.1	0.3	0.26	11.3	0.0	1.6	2	0	0	2	2	2	0	TAZ	zinc	finger
Tic22	PF04278.7	gi|379003588|ref|YP_005259260.1|	-	0.062	12.5	0.0	0.062	12.5	0.0	1.1	1	0	0	1	1	1	0	Tic22-like	family
Rad51	PF08423.6	gi|379003589|ref|YP_005259261.1|	-	2.2e-20	72.6	0.0	3.1e-20	72.1	0.0	1.1	1	0	0	1	1	1	1	Rad51
AAA_25	PF13481.1	gi|379003589|ref|YP_005259261.1|	-	3.4e-07	29.8	0.0	5.3e-07	29.2	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
KaiC	PF06745.8	gi|379003589|ref|YP_005259261.1|	-	1.1e-05	24.7	0.0	1.6e-05	24.1	0.0	1.4	1	0	0	1	1	1	1	KaiC
DUF2791	PF10923.3	gi|379003589|ref|YP_005259261.1|	-	0.016	13.8	0.2	0.037	12.6	0.1	1.5	1	1	0	1	1	1	0	P-loop	Domain	of	unknown	function	(DUF2791)
IstB_IS21	PF01695.12	gi|379003589|ref|YP_005259261.1|	-	0.065	12.6	0.0	0.12	11.7	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|379003589|ref|YP_005259261.1|	-	0.13	11.7	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
MobB	PF03205.9	gi|379003589|ref|YP_005259261.1|	-	0.14	11.8	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
HTHP	PF11534.3	gi|379003591|ref|YP_005259263.1|	-	0.014	15.4	0.1	0.022	14.8	0.1	1.3	1	0	0	1	1	1	0	Hexameric	tyrosine-coordinated	heme	protein	(HTHP)
DUF935	PF06074.7	gi|379003591|ref|YP_005259263.1|	-	0.072	11.7	1.1	0.082	11.6	0.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF935)
Transpep_BrtH	PF14399.1	gi|379003591|ref|YP_005259263.1|	-	0.13	11.5	0.7	0.15	11.2	0.5	1.0	1	0	0	1	1	1	0	NlpC/p60-like	transpeptidase
KfrA_N	PF11740.3	gi|379003591|ref|YP_005259263.1|	-	1.1	9.7	10.4	1.3	9.4	7.2	1.1	1	0	0	1	1	1	0	Plasmid	replication	region	DNA-binding	N-term
HTH_23	PF13384.1	gi|379003592|ref|YP_005259264.1|	-	1.5e-05	24.4	0.1	5.1e-05	22.7	0.1	1.9	1	1	0	1	1	1	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|379003592|ref|YP_005259264.1|	-	7.6e-05	22.0	0.5	0.00021	20.7	0.0	1.9	2	0	0	2	2	2	1	Sigma-70,	region	4
Terminase_5	PF06056.7	gi|379003592|ref|YP_005259264.1|	-	0.00024	20.5	0.0	0.00052	19.5	0.0	1.6	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
P22_Cro	PF14549.1	gi|379003592|ref|YP_005259264.1|	-	0.00067	19.3	0.1	0.0013	18.3	0.1	1.4	1	0	0	1	1	1	1	DNA-binding	transcriptional	regulator	Cro
HTH_29	PF13551.1	gi|379003592|ref|YP_005259264.1|	-	0.0015	18.6	1.1	0.0022	18.1	0.8	1.4	1	1	0	1	1	1	1	Winged	helix-turn	helix
HTH_7	PF02796.10	gi|379003592|ref|YP_005259264.1|	-	0.0018	18.0	0.1	0.0045	16.8	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HTH_3	PF01381.17	gi|379003592|ref|YP_005259264.1|	-	0.002	17.9	0.1	0.0034	17.1	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_17	PF12728.2	gi|379003592|ref|YP_005259264.1|	-	0.0077	16.4	0.0	0.014	15.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|379003592|ref|YP_005259264.1|	-	0.011	15.7	0.1	0.011	15.7	0.1	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|379003592|ref|YP_005259264.1|	-	0.028	14.3	1.0	0.028	14.3	0.7	2.3	1	1	1	2	2	2	0	Transposase
HTH_Tnp_ISL3	PF13542.1	gi|379003592|ref|YP_005259264.1|	-	0.034	13.3	0.1	0.096	11.8	0.1	1.8	1	1	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
MerR_1	PF13411.1	gi|379003592|ref|YP_005259264.1|	-	0.041	13.6	0.1	0.14	11.9	0.0	1.9	2	0	0	2	2	2	0	MerR	HTH	family	regulatory	protein
Sigma70_r4	PF04545.11	gi|379003592|ref|YP_005259264.1|	-	0.043	13.1	0.1	0.092	12.0	0.0	1.6	2	0	0	2	2	2	0	Sigma-70,	region	4
MerR	PF00376.18	gi|379003592|ref|YP_005259264.1|	-	0.1	12.1	0.0	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_38	PF13936.1	gi|379003592|ref|YP_005259264.1|	-	0.12	11.9	0.0	0.23	11.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
GcrA	PF07750.6	gi|379003592|ref|YP_005259264.1|	-	0.47	10.6	3.1	0.93	9.6	2.2	1.5	1	1	0	1	1	1	0	GcrA	cell	cycle	regulator
TrbC	PF04956.8	gi|379003593|ref|YP_005259265.1|	-	0.00057	19.8	6.4	0.012	15.6	0.1	2.2	1	1	1	2	2	2	2	TrbC/VIRB2	family
DUF3671	PF12420.3	gi|379003593|ref|YP_005259265.1|	-	0.16	11.9	0.6	1.4	8.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function
NVEALA	PF14055.1	gi|379003593|ref|YP_005259265.1|	-	0.4	10.4	0.1	0.4	10.4	0.1	2.9	3	0	0	3	3	3	0	NVEALA	protein
DUF948	PF06103.6	gi|379003593|ref|YP_005259265.1|	-	0.65	9.8	7.9	3.6	7.5	0.2	2.9	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
YrhC	PF14143.1	gi|379003593|ref|YP_005259265.1|	-	0.93	9.4	3.4	56	3.7	0.0	3.0	3	0	0	3	3	3	0	YrhC-like	protein
DUF4179	PF13786.1	gi|379003593|ref|YP_005259265.1|	-	1.2	9.4	4.6	1.4	9.2	0.0	2.6	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4179)
PaRep2b	PF07775.6	gi|379003595|ref|YP_005259267.1|	-	7.9e-126	420.2	30.0	1.3e-82	277.7	1.0	4.2	3	1	1	4	4	4	2	PaRep2b	protein
Fusion_gly	PF00523.13	gi|379003595|ref|YP_005259267.1|	-	0.23	9.4	6.1	0.46	8.5	4.3	1.4	1	0	0	1	1	1	0	Fusion	glycoprotein	F0
Prismane	PF03063.15	gi|379003595|ref|YP_005259267.1|	-	0.34	9.2	3.8	11	4.2	0.1	3.0	2	0	0	2	2	2	0	Prismane/CO	dehydrogenase	family
MMPL	PF03176.10	gi|379003596|ref|YP_005259268.1|	-	7.5e-69	231.9	34.8	2.3e-39	135.0	9.4	2.3	2	0	0	2	2	2	2	MMPL	family
MarR_2	PF12802.2	gi|379003597|ref|YP_005259269.1|	-	0.00052	19.6	0.0	0.00064	19.3	0.0	1.0	1	0	0	1	1	1	1	MarR	family
HAD_2	PF13419.1	gi|379003598|ref|YP_005259270.1|	-	8.1e-11	42.4	0.0	9.7e-11	42.1	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379003598|ref|YP_005259270.1|	-	9.3e-06	25.9	0.0	1.1e-05	25.7	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379003598|ref|YP_005259270.1|	-	0.00018	22.0	0.0	0.00022	21.7	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379003598|ref|YP_005259270.1|	-	0.029	14.0	0.0	0.052	13.2	0.0	1.4	1	0	0	1	1	1	0	HAD-hyrolase-like
DUF35_N	PF12172.3	gi|379003599|ref|YP_005259271.1|	-	0.0002	21.1	0.7	0.034	14.0	0.0	2.3	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-Mss51	PF13824.1	gi|379003599|ref|YP_005259271.1|	-	0.0063	16.3	0.5	2.4	8.0	0.1	2.2	2	0	0	2	2	2	2	Zinc-finger	of	mitochondrial	splicing	suppressor	51
UPF0547	PF10571.4	gi|379003599|ref|YP_005259271.1|	-	0.011	15.4	1.7	1	9.1	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_5	PF13719.1	gi|379003599|ref|YP_005259271.1|	-	0.011	15.2	0.7	1.3	8.6	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003599|ref|YP_005259271.1|	-	0.016	14.8	0.8	1.8	8.3	0.0	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379003599|ref|YP_005259271.1|	-	0.022	14.0	0.6	4.2	6.7	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|379003599|ref|YP_005259271.1|	-	0.066	12.9	1.3	3.3	7.4	0.2	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|379003599|ref|YP_005259271.1|	-	0.068	13.4	0.3	0.24	11.7	0.2	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|379003599|ref|YP_005259271.1|	-	0.079	12.1	2.0	1.9	7.8	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|379003599|ref|YP_005259271.1|	-	0.11	12.1	0.5	4.2	7.0	0.0	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-ISL3	PF14690.1	gi|379003599|ref|YP_005259271.1|	-	0.14	12.2	0.8	16	5.6	0.0	2.5	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
GFA	PF04828.9	gi|379003599|ref|YP_005259271.1|	-	0.14	12.0	0.6	1.2	9.1	0.0	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Zn-ribbon_8	PF09723.5	gi|379003599|ref|YP_005259271.1|	-	0.16	11.9	0.4	20	5.2	0.0	2.4	2	0	0	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003599|ref|YP_005259271.1|	-	0.28	10.7	1.9	12	5.5	0.3	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|379003599|ref|YP_005259271.1|	-	0.32	10.5	2.4	7.2	6.2	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|379003599|ref|YP_005259271.1|	-	0.88	9.5	2.9	1.3	9.0	0.1	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn_Tnp_IS1595	PF12760.2	gi|379003599|ref|YP_005259271.1|	-	3	7.7	5.0	14	5.6	0.9	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Ribosomal_L6	PF00347.18	gi|379003600|ref|YP_005259272.1|	-	1.2e-22	80.1	8.1	2.2e-11	44.0	2.0	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
YbbR	PF07949.7	gi|379003600|ref|YP_005259272.1|	-	0.17	12.0	2.6	5.9	7.0	0.0	2.4	2	0	0	2	2	2	0	YbbR-like	protein
MFS_1	PF07690.11	gi|379003601|ref|YP_005259273.1|	-	1.9e-17	63.0	49.8	1.9e-17	63.0	34.5	2.1	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
UbiA	PF01040.13	gi|379003602|ref|YP_005259274.1|	-	2e-25	89.5	25.5	2e-25	89.5	17.7	1.2	1	1	0	1	1	1	1	UbiA	prenyltransferase	family
Thioredoxin	PF00085.15	gi|379003603|ref|YP_005259275.1|	-	8.3e-11	41.4	0.0	1.2e-10	41.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|379003603|ref|YP_005259275.1|	-	1e-08	35.3	1.0	2.1e-07	31.1	0.7	2.2	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.1	gi|379003603|ref|YP_005259275.1|	-	6.3e-07	29.1	0.0	1.2e-06	28.1	0.0	1.5	1	1	0	1	1	1	1	Thioredoxin	domain
DSBA	PF01323.15	gi|379003603|ref|YP_005259275.1|	-	8.1e-05	22.2	0.8	0.051	13.1	0.0	2.3	1	1	1	2	2	2	2	DSBA-like	thioredoxin	domain
TraF	PF13728.1	gi|379003603|ref|YP_005259275.1|	-	0.00026	20.5	0.0	0.00037	20.0	0.0	1.2	1	0	0	1	1	1	1	F	plasmid	transfer	operon	protein
Thioredoxin_4	PF13462.1	gi|379003603|ref|YP_005259275.1|	-	0.071	13.1	0.1	0.3	11.0	0.1	1.8	1	1	1	2	2	2	0	Thioredoxin
Pyr_redox_2	PF07992.9	gi|379003604|ref|YP_005259276.1|	-	1.2e-36	126.4	11.3	2.2e-20	73.4	0.3	3.9	1	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379003604|ref|YP_005259276.1|	-	2.3e-25	88.8	14.1	2.3e-20	72.7	1.3	3.3	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379003604|ref|YP_005259276.1|	-	1.4e-16	61.1	3.8	1.2e-09	38.5	0.0	3.3	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|379003604|ref|YP_005259276.1|	-	3e-16	59.4	0.7	1.1e-15	57.5	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
DAO	PF01266.19	gi|379003604|ref|YP_005259276.1|	-	8.8e-15	54.4	20.2	7.2e-06	25.1	0.6	4.2	2	2	2	4	4	4	3	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379003604|ref|YP_005259276.1|	-	1.5e-10	40.1	10.9	0.0011	17.4	0.5	4.3	3	1	1	4	4	4	4	HI0933-like	protein
K_oxygenase	PF13434.1	gi|379003604|ref|YP_005259276.1|	-	5.9e-09	35.2	1.1	5.2e-07	28.8	0.0	2.8	3	0	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_8	PF13450.1	gi|379003604|ref|YP_005259276.1|	-	1.5e-07	31.3	1.5	0.0015	18.5	0.2	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.17	gi|379003604|ref|YP_005259276.1|	-	5.6e-07	28.7	13.2	0.0018	17.1	1.2	3.6	2	2	1	3	3	3	3	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.1	gi|379003604|ref|YP_005259276.1|	-	0.00012	21.9	10.6	0.3	10.8	0.0	4.2	3	1	1	4	4	4	2	FAD-NAD(P)-binding
NAD_binding_7	PF13241.1	gi|379003604|ref|YP_005259276.1|	-	0.00044	20.4	2.5	0.13	12.5	0.2	2.6	2	0	0	2	2	2	2	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|379003604|ref|YP_005259276.1|	-	0.0005	19.6	0.3	0.15	11.6	0.0	2.5	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|379003604|ref|YP_005259276.1|	-	0.00065	18.7	2.8	0.0029	16.5	0.3	2.4	2	0	0	2	2	2	1	Lycopene	cyclase	protein
2-Hacid_dh_C	PF02826.14	gi|379003604|ref|YP_005259276.1|	-	0.00079	18.6	0.5	0.0098	15.0	0.0	2.2	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FAD_binding_2	PF00890.19	gi|379003604|ref|YP_005259276.1|	-	0.001	17.9	14.1	0.0021	16.9	1.2	3.8	2	2	1	4	4	4	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|379003604|ref|YP_005259276.1|	-	0.0014	17.7	1.7	0.0014	17.7	1.2	3.8	3	1	1	4	4	4	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|379003604|ref|YP_005259276.1|	-	0.0022	17.1	4.8	0.13	11.2	0.2	3.0	3	0	0	3	3	3	1	FAD	binding	domain
3HCDH_N	PF02737.13	gi|379003604|ref|YP_005259276.1|	-	0.0023	17.6	3.2	0.0071	16.0	0.3	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|379003604|ref|YP_005259276.1|	-	0.0028	17.6	0.7	0.43	10.5	0.1	2.6	2	0	0	2	2	2	1	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|379003604|ref|YP_005259276.1|	-	0.013	14.8	1.0	0.024	14.0	0.1	1.9	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ocr	PF08684.5	gi|379003604|ref|YP_005259276.1|	-	0.03	14.3	0.1	0.098	12.7	0.0	1.8	2	0	0	2	2	2	0	DNA	mimic	ocr
Mqo	PF06039.10	gi|379003604|ref|YP_005259276.1|	-	0.15	10.2	0.2	0.78	7.8	0.0	2.0	2	1	0	2	2	2	0	Malate:quinone	oxidoreductase	(Mqo)
ThiF	PF00899.16	gi|379003604|ref|YP_005259276.1|	-	0.36	10.6	2.3	1.2	9.0	0.2	2.3	2	0	0	2	2	2	0	ThiF	family
Trp_halogenase	PF04820.9	gi|379003604|ref|YP_005259276.1|	-	2.7	6.5	9.3	0.063	11.9	0.3	2.6	2	2	1	4	4	4	0	Tryptophan	halogenase
Ldh_1_N	PF00056.18	gi|379003605|ref|YP_005259277.1|	-	2.9e-40	137.3	0.1	3.9e-40	136.9	0.1	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|379003605|ref|YP_005259277.1|	-	1.6e-23	83.3	0.0	2.9e-23	82.4	0.0	1.4	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
Glyco_hydro_4	PF02056.11	gi|379003605|ref|YP_005259277.1|	-	2.2e-05	23.8	0.5	0.00037	19.8	0.0	2.6	3	0	0	3	3	3	1	Family	4	glycosyl	hydrolase
UDPG_MGDP_dh_N	PF03721.9	gi|379003605|ref|YP_005259277.1|	-	0.065	12.6	1.6	0.64	9.3	1.1	2.2	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Peptidase_S49_N	PF08496.5	gi|379003606|ref|YP_005259278.1|	-	0.0053	16.5	3.2	0.0066	16.2	2.2	1.1	1	0	0	1	1	1	1	Peptidase	family	S49	N-terminal
D5_N	PF08706.6	gi|379003606|ref|YP_005259278.1|	-	0.13	12.3	1.2	0.16	12.0	0.9	1.1	1	0	0	1	1	1	0	D5	N	terminal	like
DUF1299	PF06975.6	gi|379003606|ref|YP_005259278.1|	-	1.2	9.1	4.4	2	8.3	3.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1299)
YqzE	PF14038.1	gi|379003606|ref|YP_005259278.1|	-	2.2	8.0	6.3	4.6	7.0	4.3	1.6	1	1	0	1	1	1	0	YqzE-like	protein
BLVR	PF06375.6	gi|379003606|ref|YP_005259278.1|	-	2.6	7.8	8.5	3.4	7.4	5.9	1.2	1	0	0	1	1	1	0	Bovine	leukaemia	virus	receptor	(BLVR)
Thioredoxin_3	PF13192.1	gi|379003607|ref|YP_005259279.1|	-	1.4e-13	50.4	0.6	4.8e-10	39.1	0.2	2.7	3	0	0	3	3	3	2	Thioredoxin	domain
Thioredoxin	PF00085.15	gi|379003607|ref|YP_005259279.1|	-	1.8e-10	40.3	0.0	2.4e-06	27.1	0.0	2.4	2	1	0	2	2	2	2	Thioredoxin
Thioredoxin_2	PF13098.1	gi|379003607|ref|YP_005259279.1|	-	0.00057	20.0	0.6	0.033	14.3	0.4	2.9	2	1	0	2	2	2	1	Thioredoxin-like	domain
ABC_transp_aux	PF09822.4	gi|379003607|ref|YP_005259279.1|	-	0.0045	16.4	0.0	0.038	13.4	0.0	1.9	2	0	0	2	2	2	1	ABC-type	uncharacterized	transport	system
Glutaredoxin	PF00462.19	gi|379003607|ref|YP_005259279.1|	-	0.014	15.4	1.9	0.61	10.1	0.1	3.1	3	0	0	3	3	3	0	Glutaredoxin
Redoxin	PF08534.5	gi|379003607|ref|YP_005259279.1|	-	0.023	14.2	0.2	0.085	12.4	0.1	2.0	1	1	1	2	2	2	0	Redoxin
TrbC_Ftype	PF09673.5	gi|379003607|ref|YP_005259279.1|	-	0.081	12.5	0.1	0.83	9.2	0.0	2.3	2	1	0	2	2	2	0	Type-F	conjugative	transfer	system	pilin	assembly	protein
DSBA	PF01323.15	gi|379003607|ref|YP_005259279.1|	-	0.091	12.3	0.0	0.18	11.3	0.0	1.6	1	0	0	1	1	1	0	DSBA-like	thioredoxin	domain
Thioredoxin_8	PF13905.1	gi|379003607|ref|YP_005259279.1|	-	0.13	12.4	0.1	2.7	8.1	0.0	2.9	3	1	0	3	3	3	0	Thioredoxin-like
Ham1p_like	PF01725.11	gi|379003608|ref|YP_005259280.1|	-	1.4e-51	174.5	0.0	1.6e-51	174.3	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
CBS	PF00571.23	gi|379003609|ref|YP_005259281.1|	-	3e-49	164.5	14.9	1.1e-14	53.8	0.0	4.2	4	0	0	4	4	4	4	CBS	domain
RBD	PF02196.10	gi|379003609|ref|YP_005259281.1|	-	0.015	15.0	0.0	10	5.9	0.0	2.8	2	0	0	2	2	2	0	Raf-like	Ras-binding	domain
DEAD_assoc	PF08494.6	gi|379003611|ref|YP_005259283.1|	-	4.9e-41	140.5	0.4	4.9e-41	140.5	0.3	2.0	2	0	0	2	2	2	1	DEAD/H	associated
DEAD	PF00270.24	gi|379003611|ref|YP_005259283.1|	-	7.2e-36	123.2	0.0	8e-35	119.8	0.0	2.6	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|379003611|ref|YP_005259283.1|	-	1.5e-14	53.5	0.0	1.2e-13	50.7	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|379003611|ref|YP_005259283.1|	-	1.8e-07	31.1	0.0	3.5e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|379003611|ref|YP_005259283.1|	-	6.6e-05	21.8	0.0	0.00012	20.9	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_25	PF13481.1	gi|379003611|ref|YP_005259283.1|	-	0.0012	18.3	0.1	0.0037	16.6	0.1	1.9	1	0	0	1	1	1	1	AAA	domain
HTH_23	PF13384.1	gi|379003611|ref|YP_005259283.1|	-	0.0017	17.9	0.1	0.025	14.2	0.0	2.9	2	0	0	2	2	2	1	Homeodomain-like	domain
DUF3071	PF11268.3	gi|379003611|ref|YP_005259283.1|	-	0.0021	17.8	0.1	0.0078	15.9	0.1	2.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3071)
CcmH	PF03918.9	gi|379003611|ref|YP_005259283.1|	-	0.023	13.7	0.0	0.09	11.7	0.0	1.9	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
AAA_10	PF12846.2	gi|379003611|ref|YP_005259283.1|	-	0.023	14.1	0.1	3.2	7.1	0.0	2.9	3	0	0	3	3	3	0	AAA-like	domain
UvrD-helicase	PF00580.16	gi|379003611|ref|YP_005259283.1|	-	0.096	11.9	0.0	0.18	11.0	0.0	1.4	1	0	0	1	1	1	0	UvrD/REP	helicase	N-terminal	domain
Hexapep	PF00132.19	gi|379003612|ref|YP_005259284.1|	-	0.15	11.6	1.2	14	5.3	0.0	3.7	4	0	0	4	4	4	0	Bacterial	transferase	hexapeptide	(six	repeats)
GatB_Yqey	PF02637.13	gi|379003613|ref|YP_005259285.1|	-	0.12	12.0	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	GatB	domain
PTS_IIA	PF02255.11	gi|379003614|ref|YP_005259286.1|	-	0.025	14.4	0.7	0.035	13.9	0.2	1.5	2	0	0	2	2	2	0	PTS	system,	Lactose/Cellobiose	specific	IIA	subunit
OsmC	PF02566.14	gi|379003614|ref|YP_005259286.1|	-	0.029	14.5	0.6	0.04	14.1	0.4	1.2	1	0	0	1	1	1	0	OsmC-like	protein
FCD	PF07729.7	gi|379003614|ref|YP_005259286.1|	-	0.092	13.0	0.2	0.12	12.6	0.1	1.2	1	0	0	1	1	1	0	FCD	domain
RHH_1	PF01402.16	gi|379003615|ref|YP_005259287.1|	-	7.7e-07	28.7	1.6	9.9e-07	28.4	0.1	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Sigma70_r3	PF04539.11	gi|379003615|ref|YP_005259287.1|	-	0.091	12.6	1.0	6.3	6.7	0.0	3.2	3	1	1	4	4	4	0	Sigma-70	region	3
P21-Arc	PF04062.9	gi|379003615|ref|YP_005259287.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.5	1	0	0	1	1	1	0	ARP2/3	complex	ARPC3	(21	kDa)	subunit
Glyco_tranf_2_3	PF13641.1	gi|379003616|ref|YP_005259288.1|	-	2.6e-15	56.8	0.0	3.7e-15	56.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|379003616|ref|YP_005259288.1|	-	6.1e-15	55.3	0.0	8.7e-15	54.7	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|379003616|ref|YP_005259288.1|	-	4.5e-11	42.3	0.0	7.9e-11	41.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
DUF3367	PF11847.3	gi|379003617|ref|YP_005259289.1|	-	1.3	6.8	4.4	1.5	6.6	3.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3367)
ABC_tran	PF00005.22	gi|379003618|ref|YP_005259290.1|	-	4.5e-38	130.6	0.0	7.1e-21	74.9	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|379003618|ref|YP_005259290.1|	-	8.4e-13	48.9	3.1	0.0017	18.3	0.5	4.2	2	2	0	3	3	3	3	AAA	domain
RLI	PF04068.10	gi|379003618|ref|YP_005259290.1|	-	1.5e-12	46.8	4.1	3.7e-12	45.6	2.9	1.7	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
SMC_N	PF02463.14	gi|379003618|ref|YP_005259290.1|	-	3.2e-12	46.1	1.1	8.2e-05	21.9	0.0	3.3	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
Fer4	PF00037.22	gi|379003618|ref|YP_005259290.1|	-	6.2e-08	31.9	11.3	1.7e-07	30.5	2.7	2.6	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379003618|ref|YP_005259290.1|	-	2.8e-07	30.1	14.1	2.3e-05	24.0	2.1	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379003618|ref|YP_005259290.1|	-	3.4e-05	24.1	22.8	0.0011	19.2	9.0	2.1	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
AAA	PF00004.24	gi|379003618|ref|YP_005259290.1|	-	0.00011	22.3	0.1	0.43	10.7	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_10	PF13237.1	gi|379003618|ref|YP_005259290.1|	-	0.00018	21.2	9.0	0.00033	20.3	6.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Miro	PF08477.8	gi|379003618|ref|YP_005259290.1|	-	0.00024	21.5	0.2	0.027	14.9	0.0	3.1	3	0	0	3	3	3	1	Miro-like	protein
Fer4_21	PF14697.1	gi|379003618|ref|YP_005259290.1|	-	0.00025	20.8	10.5	0.00042	20.1	7.3	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
AAA_17	PF13207.1	gi|379003618|ref|YP_005259290.1|	-	0.00025	21.8	1.3	0.32	11.8	0.0	3.4	2	1	0	2	2	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|379003618|ref|YP_005259290.1|	-	0.00026	20.8	0.0	0.81	9.6	0.0	3.1	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
Fer4_2	PF12797.2	gi|379003618|ref|YP_005259290.1|	-	0.00029	20.5	13.2	0.0027	17.5	1.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_15	PF13175.1	gi|379003618|ref|YP_005259290.1|	-	0.00037	19.6	0.0	0.52	9.2	0.0	3.3	3	1	0	3	3	3	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379003618|ref|YP_005259290.1|	-	0.00048	19.5	0.2	0.1	12.0	0.0	3.3	3	0	0	3	3	3	1	AAA	domain
MobB	PF03205.9	gi|379003618|ref|YP_005259290.1|	-	0.00063	19.4	2.4	0.088	12.5	0.4	2.6	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Fer4_9	PF13187.1	gi|379003618|ref|YP_005259290.1|	-	0.00073	19.7	9.8	0.0018	18.4	6.8	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
DUF258	PF03193.11	gi|379003618|ref|YP_005259290.1|	-	0.0012	18.0	4.6	0.017	14.2	0.1	3.3	3	0	0	3	3	3	1	Protein	of	unknown	function,	DUF258
RuvB_N	PF05496.7	gi|379003618|ref|YP_005259290.1|	-	0.0018	17.3	0.1	1.6	7.7	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
UPF0079	PF02367.12	gi|379003618|ref|YP_005259290.1|	-	0.0024	17.4	1.3	0.19	11.3	0.0	2.8	3	0	0	3	3	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
Fer4_16	PF13484.1	gi|379003618|ref|YP_005259290.1|	-	0.0029	18.3	5.3	0.015	15.9	0.2	2.4	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
AAA_23	PF13476.1	gi|379003618|ref|YP_005259290.1|	-	0.0041	17.4	0.1	0.2	11.9	0.0	2.5	3	0	0	3	3	2	1	AAA	domain
AAA_33	PF13671.1	gi|379003618|ref|YP_005259290.1|	-	0.0093	15.8	1.9	0.28	11.0	0.1	3.2	2	2	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|379003618|ref|YP_005259290.1|	-	0.01	16.1	0.7	5.3	7.3	0.3	2.8	2	1	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|379003618|ref|YP_005259290.1|	-	0.011	15.8	0.0	1.3	9.2	0.0	2.8	3	0	0	3	3	2	0	RNA	helicase
NACHT	PF05729.7	gi|379003618|ref|YP_005259290.1|	-	0.012	15.2	0.5	0.071	12.7	0.1	2.1	2	0	0	2	2	2	0	NACHT	domain
AAA_14	PF13173.1	gi|379003618|ref|YP_005259290.1|	-	0.013	15.4	0.1	1.9	8.3	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
RecA	PF00154.16	gi|379003618|ref|YP_005259290.1|	-	0.017	14.1	0.1	0.82	8.6	0.0	2.2	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
Arch_ATPase	PF01637.13	gi|379003618|ref|YP_005259290.1|	-	0.022	14.4	1.2	0.34	10.5	0.0	2.6	2	1	0	2	2	2	0	Archaeal	ATPase
Fer4_3	PF12798.2	gi|379003618|ref|YP_005259290.1|	-	0.026	15.0	5.0	0.026	15.0	3.5	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
AAA_29	PF13555.1	gi|379003618|ref|YP_005259290.1|	-	0.039	13.4	0.1	1.4	8.4	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
MMR_HSR1	PF01926.18	gi|379003618|ref|YP_005259290.1|	-	0.045	13.7	0.2	0.53	10.2	0.1	2.6	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_22	PF13401.1	gi|379003618|ref|YP_005259290.1|	-	0.079	13.1	2.7	1.6	8.8	0.2	3.3	2	2	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|379003618|ref|YP_005259290.1|	-	0.17	10.7	2.1	1.6	7.5	0.2	2.2	2	0	0	2	2	2	0	NB-ARC	domain
Fer4_8	PF13183.1	gi|379003618|ref|YP_005259290.1|	-	0.17	11.9	8.0	0.43	10.6	5.5	1.7	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003618|ref|YP_005259290.1|	-	0.29	11.5	12.4	0.11	12.8	1.5	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379003618|ref|YP_005259290.1|	-	1	9.7	9.7	21	5.5	6.7	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_24	PF13479.1	gi|379003618|ref|YP_005259290.1|	-	4.4	6.8	4.6	1.9	8.0	0.1	2.3	3	0	0	3	3	2	0	AAA	domain
Fer4_18	PF13746.1	gi|379003618|ref|YP_005259290.1|	-	5.5	7.4	11.1	0.53	10.7	2.4	2.6	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003618|ref|YP_005259290.1|	-	7	7.3	11.7	0.69	10.5	2.4	2.5	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
NTPase_1	PF03266.10	gi|379003618|ref|YP_005259290.1|	-	7	6.3	6.3	2.3	7.9	0.4	3.0	4	0	0	4	4	3	0	NTPase
2_5_RNA_ligase2	PF13563.1	gi|379003619|ref|YP_005259291.1|	-	2.9e-09	36.8	0.4	3.9e-08	33.1	0.3	2.0	1	1	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
LigT_PEase	PF02834.11	gi|379003619|ref|YP_005259291.1|	-	0.00039	20.3	1.2	0.19	11.7	0.0	2.8	2	1	0	2	2	2	2	LigT	like	Phosphoesterase
UPF0126	PF03458.8	gi|379003621|ref|YP_005259293.1|	-	5.3e-47	157.3	11.5	8.3e-24	83.0	1.1	2.2	2	0	0	2	2	2	2	UPF0126	domain
TF_Zn_Ribbon	PF08271.7	gi|379003625|ref|YP_005259297.1|	-	0.0018	17.5	1.7	0.075	12.3	0.2	2.4	2	0	0	2	2	2	1	TFIIB	zinc-binding
Rad50_zn_hook	PF04423.9	gi|379003625|ref|YP_005259297.1|	-	0.0048	16.3	0.6	0.011	15.2	0.1	1.7	2	0	0	2	2	2	1	Rad50	zinc	hook	motif
CDC37_C	PF08564.5	gi|379003625|ref|YP_005259297.1|	-	0.024	14.4	0.0	0.18	11.6	0.0	2.0	1	1	0	1	1	1	0	Cdc37	C	terminal	domain
zinc_ribbon_4	PF13717.1	gi|379003625|ref|YP_005259297.1|	-	0.11	12.1	2.3	4	7.2	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
SpoVIF	PF14069.1	gi|379003625|ref|YP_005259297.1|	-	0.13	12.0	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Stage	VI	sporulation	protein	F
zinc_ribbon_5	PF13719.1	gi|379003625|ref|YP_005259297.1|	-	0.13	11.8	2.5	3.1	7.4	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
OmdA	PF13376.1	gi|379003625|ref|YP_005259297.1|	-	0.14	11.8	0.0	0.19	11.3	0.0	1.2	1	0	0	1	1	1	0	Bacteriocin-protection,	YdeI	or	OmpD-Associated
zf-ribbon_3	PF13248.1	gi|379003625|ref|YP_005259297.1|	-	0.22	10.7	1.7	2.5	7.4	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Methyltransf_23	PF13489.1	gi|379003626|ref|YP_005259298.1|	-	0.0013	18.4	0.0	0.0018	18.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379003626|ref|YP_005259298.1|	-	0.0049	17.3	0.0	0.0095	16.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Flt3_lig	PF02947.9	gi|379003626|ref|YP_005259298.1|	-	0.027	14.3	0.0	0.054	13.3	0.0	1.4	1	0	0	1	1	1	0	flt3	ligand
Methyltransf_31	PF13847.1	gi|379003626|ref|YP_005259298.1|	-	0.044	13.3	0.0	0.079	12.5	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003626|ref|YP_005259298.1|	-	0.12	12.8	0.0	0.57	10.6	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379003627|ref|YP_005259299.1|	-	1.4e-11	44.7	0.0	2.4e-11	43.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|379003627|ref|YP_005259299.1|	-	4.6e-10	38.9	0.0	1e-09	37.8	0.0	1.4	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|379003627|ref|YP_005259299.1|	-	3.3e-06	26.7	0.0	2e-05	24.2	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003627|ref|YP_005259299.1|	-	9.5e-05	22.7	0.0	0.00021	21.6	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379003627|ref|YP_005259299.1|	-	0.00048	19.8	0.0	0.0006	19.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003627|ref|YP_005259299.1|	-	0.00057	20.4	0.1	0.0012	19.4	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003627|ref|YP_005259299.1|	-	0.024	15.1	0.0	0.05	14.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
DICT	PF10069.4	gi|379003627|ref|YP_005259299.1|	-	0.041	13.4	0.1	0.8	9.2	0.0	2.4	2	1	0	2	2	2	0	Sensory	domain	found	in	DIguanylate	Cyclases	&	Two-component	systems
DREV	PF05219.7	gi|379003627|ref|YP_005259299.1|	-	0.05	12.4	0.0	0.075	11.8	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
Tox-ART-HYE1	PF15634.1	gi|379003627|ref|YP_005259299.1|	-	0.15	10.9	0.1	0.26	10.2	0.0	1.3	1	0	0	1	1	1	0	HYE1	signature	containing	ADP-ribosyltransferase
Nitroreductase	PF00881.19	gi|379003629|ref|YP_005259301.1|	-	2.3e-32	112.1	0.0	2.9e-32	111.7	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
Peptidase_M20	PF01546.23	gi|379003630|ref|YP_005259302.1|	-	1e-36	126.2	0.0	1.3e-36	125.8	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|379003630|ref|YP_005259302.1|	-	1.7e-21	76.0	0.0	2.8e-21	75.3	0.0	1.3	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
ADH_N	PF08240.7	gi|379003631|ref|YP_005259303.1|	-	4.6e-32	110.0	0.1	7e-32	109.4	0.1	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|379003631|ref|YP_005259303.1|	-	1.8e-19	69.5	0.1	1.3e-17	63.5	0.0	2.8	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|379003631|ref|YP_005259303.1|	-	1.1e-10	42.4	0.1	6.4e-10	40.0	0.0	2.1	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
Shikimate_DH	PF01488.15	gi|379003631|ref|YP_005259303.1|	-	8.7e-06	25.8	0.0	2.1e-05	24.6	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_10	PF13460.1	gi|379003631|ref|YP_005259303.1|	-	4.6e-05	23.4	0.2	7.1e-05	22.8	0.2	1.3	1	0	0	1	1	1	1	NADH(P)-binding
2-Hacid_dh_C	PF02826.14	gi|379003631|ref|YP_005259303.1|	-	0.00032	19.9	0.1	0.00051	19.2	0.1	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1188	PF06690.6	gi|379003631|ref|YP_005259303.1|	-	0.0044	16.1	0.1	0.007	15.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1188)
ApbA	PF02558.11	gi|379003631|ref|YP_005259303.1|	-	0.0083	15.5	0.0	0.013	14.8	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.1	gi|379003631|ref|YP_005259303.1|	-	0.015	15.5	0.1	0.028	14.6	0.0	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|379003631|ref|YP_005259303.1|	-	0.018	14.6	0.1	0.036	13.6	0.1	1.4	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|379003631|ref|YP_005259303.1|	-	0.029	14.3	0.1	0.1	12.5	0.1	1.7	1	1	1	2	2	2	0	TrkA-N	domain
AdoHcyase_NAD	PF00670.16	gi|379003631|ref|YP_005259303.1|	-	0.039	13.8	0.1	0.064	13.1	0.1	1.3	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|379003631|ref|YP_005259303.1|	-	0.045	13.3	0.0	0.07	12.7	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379003631|ref|YP_005259303.1|	-	0.049	13.3	0.0	0.1	12.3	0.0	1.7	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.22	gi|379003631|ref|YP_005259303.1|	-	0.058	13.8	0.2	0.11	12.9	0.1	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|379003631|ref|YP_005259303.1|	-	0.074	12.0	0.2	0.11	11.5	0.2	1.1	1	0	0	1	1	1	0	FAD	binding	domain
ThiF	PF00899.16	gi|379003631|ref|YP_005259303.1|	-	0.15	11.8	1.2	3.8	7.3	1.0	2.2	1	1	0	2	2	2	0	ThiF	family
tRNA_deacylase	PF04414.7	gi|379003632|ref|YP_005259304.1|	-	1.1e-53	181.5	0.0	1.4e-53	181.2	0.0	1.1	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
SpoU_sub_bind	PF08032.7	gi|379003632|ref|YP_005259304.1|	-	0.059	13.5	0.1	0.15	12.2	0.1	1.6	1	0	0	1	1	1	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
MFS_1	PF07690.11	gi|379003633|ref|YP_005259305.1|	-	2e-43	148.4	53.3	2e-34	118.8	17.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|379003633|ref|YP_005259305.1|	-	2e-40	138.7	30.9	3.8e-30	104.8	5.0	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
MFS_2	PF13347.1	gi|379003633|ref|YP_005259305.1|	-	0.001	17.5	3.3	0.001	17.5	2.3	2.8	2	1	0	3	3	3	1	MFS/sugar	transport	protein
DUF1228	PF06779.9	gi|379003633|ref|YP_005259305.1|	-	0.0068	16.4	2.9	0.0068	16.4	2.0	3.6	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF1228)
MAF_flag10	PF01973.13	gi|379003634|ref|YP_005259306.1|	-	4.5e-10	39.2	0.0	7.1e-10	38.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
PhosphMutase	PF10143.4	gi|379003636|ref|YP_005259308.1|	-	3.7e-59	199.2	0.2	6.3e-59	198.4	0.0	1.5	2	0	0	2	2	2	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.13	gi|379003636|ref|YP_005259308.1|	-	1.6e-44	152.2	0.0	1.8e-44	152.0	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Alk_phosphatase	PF00245.15	gi|379003636|ref|YP_005259308.1|	-	0.0004	19.1	0.4	0.0067	15.1	0.3	2.0	1	1	1	2	2	2	2	Alkaline	phosphatase
Phosphodiest	PF01663.17	gi|379003636|ref|YP_005259308.1|	-	0.00059	19.2	0.1	0.0012	18.2	0.1	1.4	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
CutA1	PF03091.10	gi|379003637|ref|YP_005259309.1|	-	1.9e-37	127.0	0.3	2.1e-37	126.8	0.2	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
HD	PF01966.17	gi|379003638|ref|YP_005259310.1|	-	2.2e-06	27.7	0.2	3.6e-06	26.9	0.2	1.4	1	0	0	1	1	1	1	HD	domain
TRI12	PF06609.8	gi|379003638|ref|YP_005259310.1|	-	0.0024	16.1	0.0	0.0035	15.6	0.0	1.1	1	0	0	1	1	1	1	Fungal	trichothecene	efflux	pump	(TRI12)
Resolvase	PF00239.16	gi|379003640|ref|YP_005259312.1|	-	0.092	12.6	0.0	0.35	10.7	0.0	1.9	1	1	2	3	3	3	0	Resolvase,	N	terminal	domain
Na_H_Exchanger	PF00999.16	gi|379003641|ref|YP_005259313.1|	-	1.5e-16	59.8	51.5	1.5e-16	59.8	35.7	2.7	2	1	0	2	2	2	1	Sodium/hydrogen	exchanger	family
tRNA_SAD	PF07973.9	gi|379003642|ref|YP_005259314.1|	-	2.7e-13	49.5	0.3	6.5e-13	48.3	0.1	1.7	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2c	PF01411.14	gi|379003642|ref|YP_005259314.1|	-	1.2e-06	27.1	0.1	1.7e-06	26.6	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
PALP	PF00291.20	gi|379003643|ref|YP_005259315.1|	-	9.8e-85	284.4	2.0	1.2e-84	284.1	1.4	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|379003643|ref|YP_005259315.1|	-	4.4e-10	38.8	0.1	1.8e-09	36.8	0.0	2.1	2	0	0	2	2	2	1	ACT	domain
ACT_4	PF13291.1	gi|379003643|ref|YP_005259315.1|	-	0.00013	22.1	0.0	0.00032	20.9	0.0	1.6	1	0	0	1	1	1	1	ACT	domain
ACT_7	PF13840.1	gi|379003643|ref|YP_005259315.1|	-	0.017	14.6	3.6	0.47	10.0	0.0	3.5	2	1	1	3	3	3	0	ACT	domain
CbiA	PF01656.18	gi|379003643|ref|YP_005259315.1|	-	0.024	14.0	0.0	0.044	13.1	0.0	1.5	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DAGK_cat	PF00781.19	gi|379003643|ref|YP_005259315.1|	-	0.028	13.8	0.1	0.073	12.4	0.1	1.7	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Aminotran_1_2	PF00155.16	gi|379003644|ref|YP_005259316.1|	-	1.8e-42	145.6	0.0	2e-42	145.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.2	gi|379003644|ref|YP_005259316.1|	-	6e-13	48.1	0.0	9.1e-13	47.5	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
DUF1192	PF06698.6	gi|379003644|ref|YP_005259316.1|	-	0.065	13.0	0.5	1.5	8.6	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DegT_DnrJ_EryC1	PF01041.12	gi|379003644|ref|YP_005259316.1|	-	0.14	11.1	0.0	0.25	10.3	0.0	1.4	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
zf-HIT	PF04438.11	gi|379003645|ref|YP_005259317.1|	-	1.6e-05	24.4	31.8	2.2e-05	23.9	4.1	3.8	3	1	0	3	3	3	2	HIT	zinc	finger
zf-B_box	PF00643.19	gi|379003645|ref|YP_005259317.1|	-	0.0025	17.6	27.5	0.17	11.7	8.0	3.8	3	1	0	3	3	3	2	B-box	zinc	finger
zf-C2HC5	PF06221.8	gi|379003645|ref|YP_005259317.1|	-	0.3	10.8	24.8	0.093	12.4	2.8	3.1	1	1	2	3	3	3	0	Putative	zinc	finger	motif,	C2HC5-type
DUF1610	PF07754.6	gi|379003645|ref|YP_005259317.1|	-	0.73	10.0	0.2	0.73	10.0	0.2	4.9	6	1	0	6	6	6	0	Domain	of	unknown	function	(DUF1610)
FYVE	PF01363.16	gi|379003645|ref|YP_005259317.1|	-	2.9	7.8	34.1	4.1	7.3	14.1	3.7	1	1	1	2	2	2	0	FYVE	zinc	finger
Tnp_zf-ribbon_2	PF13842.1	gi|379003645|ref|YP_005259317.1|	-	3.9	7.9	30.9	3.1	8.2	4.4	4.1	2	1	2	4	4	4	0	DDE_Tnp_1-like	zinc-ribbon
CoA_binding	PF02629.14	gi|379003646|ref|YP_005259318.1|	-	4.9e-31	107.1	8.8	9.1e-31	106.2	1.4	2.7	2	1	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|379003646|ref|YP_005259318.1|	-	4.2e-11	42.6	0.2	9.2e-11	41.5	0.1	1.5	1	0	0	1	1	1	1	CoA-ligase
Succ_CoA_lig	PF13607.1	gi|379003646|ref|YP_005259318.1|	-	1.5e-09	37.5	0.0	2.9e-09	36.6	0.0	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
CoA_binding_2	PF13380.1	gi|379003646|ref|YP_005259318.1|	-	4.6e-09	36.4	1.2	7.6e-09	35.7	0.4	1.7	2	0	0	2	2	2	1	CoA	binding	domain
GFO_IDH_MocA	PF01408.17	gi|379003646|ref|YP_005259318.1|	-	0.0011	19.5	0.7	0.0053	17.2	0.3	2.1	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ATP-grasp_2	PF08442.5	gi|379003647|ref|YP_005259319.1|	-	2.3e-66	223.0	1.5	2.4e-66	222.9	0.3	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|379003647|ref|YP_005259319.1|	-	1.6e-16	60.2	0.3	2.8e-16	59.4	0.2	1.4	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.1	gi|379003647|ref|YP_005259319.1|	-	1.6e-13	50.3	3.9	2.5e-13	49.7	0.9	2.4	2	1	0	2	2	2	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|379003647|ref|YP_005259319.1|	-	8.1e-09	35.0	0.1	1.8e-08	33.9	0.1	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
GARS_A	PF01071.14	gi|379003647|ref|YP_005259319.1|	-	5.3e-06	26.1	0.2	1.1e-05	25.0	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_4	PF13535.1	gi|379003647|ref|YP_005259319.1|	-	1.6e-05	24.7	0.0	3.7e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|379003647|ref|YP_005259319.1|	-	0.00049	19.4	0.1	0.00085	18.7	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Ribosomal_L22	PF00237.14	gi|379003647|ref|YP_005259319.1|	-	0.0046	16.8	0.1	0.019	14.8	0.0	2.0	2	0	0	2	2	2	1	Ribosomal	protein	L22p/L17e
RimK	PF08443.6	gi|379003647|ref|YP_005259319.1|	-	0.0059	16.1	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
Rrf2	PF02082.15	gi|379003647|ref|YP_005259319.1|	-	0.091	12.8	0.1	1.9	8.6	0.0	2.8	3	0	0	3	3	3	0	Transcriptional	regulator
SH3_3	PF08239.6	gi|379003648|ref|YP_005259320.1|	-	0.021	14.9	2.2	0.093	12.9	1.2	1.9	1	1	1	2	2	2	0	Bacterial	SH3	domain
DUF2188	PF09954.4	gi|379003648|ref|YP_005259320.1|	-	0.055	13.3	0.1	0.07	13.0	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
SH3_4	PF06347.8	gi|379003648|ref|YP_005259320.1|	-	0.076	12.5	1.2	0.14	11.7	0.2	1.8	2	0	0	2	2	2	0	Bacterial	SH3	domain
STb_secrete	PF09075.5	gi|379003648|ref|YP_005259320.1|	-	0.098	12.5	0.0	0.12	12.2	0.0	1.2	1	0	0	1	1	1	0	Heat-stable	enterotoxin	B,	secretory
DAO	PF01266.19	gi|379003649|ref|YP_005259321.1|	-	3.5e-57	193.9	1.0	4.2e-57	193.6	0.7	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379003649|ref|YP_005259321.1|	-	3.4e-07	30.3	0.1	0.023	14.5	0.0	2.2	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|379003649|ref|YP_005259321.1|	-	9.8e-07	28.7	0.2	2.7e-06	27.2	0.1	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379003649|ref|YP_005259321.1|	-	2.2e-05	24.5	0.1	0.00049	20.2	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|379003649|ref|YP_005259321.1|	-	0.00051	18.9	0.1	0.0036	16.2	0.1	2.0	1	1	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|379003649|ref|YP_005259321.1|	-	0.0014	17.6	0.1	0.0023	16.9	0.1	1.3	1	0	0	1	1	1	1	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|379003649|ref|YP_005259321.1|	-	0.0073	16.0	0.3	0.028	14.2	0.0	2.1	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|379003649|ref|YP_005259321.1|	-	0.0092	16.3	0.2	0.17	12.3	0.0	2.8	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|379003649|ref|YP_005259321.1|	-	0.018	14.1	0.1	0.12	11.4	0.0	2.1	2	0	0	2	2	2	0	Thi4	family
Mqo	PF06039.10	gi|379003649|ref|YP_005259321.1|	-	0.13	10.3	0.0	0.18	9.9	0.0	1.1	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
FUR	PF01475.14	gi|379003650|ref|YP_005259322.1|	-	5.9e-20	71.3	0.2	7e-20	71.1	0.1	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
Penicillinase_R	PF03965.11	gi|379003650|ref|YP_005259322.1|	-	3.3e-06	27.1	0.1	9.1e-06	25.7	0.0	1.7	1	1	1	2	2	2	1	Penicillinase	repressor
PadR	PF03551.9	gi|379003650|ref|YP_005259322.1|	-	0.0019	17.9	0.0	0.0037	16.9	0.0	1.5	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|379003650|ref|YP_005259322.1|	-	0.0024	17.5	0.2	0.017	14.7	0.0	2.4	2	1	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.11	gi|379003650|ref|YP_005259322.1|	-	0.0039	16.7	0.0	0.014	14.9	0.0	1.9	2	0	0	2	2	2	1	LexA	DNA	binding	domain
RNase_Zc3h12a	PF11977.3	gi|379003650|ref|YP_005259322.1|	-	0.015	15.1	0.1	0.93	9.3	0.0	2.2	1	1	1	2	2	2	0	Zc3h12a-like	Ribonuclease	NYN	domain
Pyr_excise	PF03013.9	gi|379003650|ref|YP_005259322.1|	-	0.017	14.8	0.1	0.22	11.3	0.1	2.0	2	0	0	2	2	2	0	Pyrimidine	dimer	DNA	glycosylase
Fe_dep_repress	PF01325.14	gi|379003650|ref|YP_005259322.1|	-	0.019	14.8	0.3	2.3	8.2	0.0	2.4	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Tnp_Tc3_2	PF01498.13	gi|379003650|ref|YP_005259322.1|	-	0.019	14.9	0.2	0.07	13.1	0.0	1.9	2	0	0	2	2	2	0	Transposase
GHL6	PF14871.1	gi|379003650|ref|YP_005259322.1|	-	0.047	13.7	0.1	0.09	12.8	0.0	1.5	2	0	0	2	2	2	0	Hypothetical	glycosyl	hydrolase	6
HTH_IclR	PF09339.5	gi|379003650|ref|YP_005259322.1|	-	0.054	13.1	0.1	0.22	11.1	0.0	1.9	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Ribosomal_S8	PF00410.14	gi|379003650|ref|YP_005259322.1|	-	0.057	13.2	0.1	0.14	12.0	0.0	1.6	1	1	1	2	2	2	0	Ribosomal	protein	S8
NUC173	PF08161.7	gi|379003650|ref|YP_005259322.1|	-	0.067	12.5	0.0	0.09	12.1	0.0	1.3	1	0	0	1	1	1	0	NUC173	domain
RNA_pol_Rpb5_N	PF03871.9	gi|379003650|ref|YP_005259322.1|	-	0.086	13.2	0.3	0.32	11.4	0.1	2.0	1	1	1	2	2	2	0	RNA	polymerase	Rpb5,	N-terminal	domain
Fibritin_C	PF07921.7	gi|379003650|ref|YP_005259322.1|	-	0.091	12.6	0.1	0.16	11.9	0.0	1.7	2	1	0	2	2	2	0	Fibritin	C-terminal	region
RNA_pol_Rpc34	PF05158.7	gi|379003650|ref|YP_005259322.1|	-	0.095	11.8	0.0	0.19	10.8	0.0	1.6	1	1	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
Sigma70_r1_1	PF03979.9	gi|379003650|ref|YP_005259322.1|	-	0.11	12.4	0.1	1	9.3	0.0	2.3	2	1	1	3	3	3	0	Sigma-70	factor,	region	1.1
UBA_3	PF09288.5	gi|379003650|ref|YP_005259322.1|	-	0.24	11.0	2.1	18	5.0	0.0	2.8	3	1	0	3	3	3	0	Fungal	ubiquitin-associated	domain
Adenosine_kin	PF04008.9	gi|379003651|ref|YP_005259323.1|	-	1.5e-73	245.4	0.7	1.6e-73	245.2	0.5	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
DUF2554	PF10829.3	gi|379003651|ref|YP_005259323.1|	-	0.11	12.6	0.0	0.2	11.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2554)
MFS_1	PF07690.11	gi|379003652|ref|YP_005259324.1|	-	2.8e-26	92.0	48.3	6.7e-21	74.3	26.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DEAD	PF00270.24	gi|379003653|ref|YP_005259325.1|	-	5.4e-28	97.5	0.0	2.6e-26	92.1	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|379003653|ref|YP_005259325.1|	-	3.9e-18	65.0	0.0	6.8e-16	57.9	0.0	2.6	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.5	gi|379003653|ref|YP_005259325.1|	-	1.9e-15	57.1	0.1	5.5e-15	55.6	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
HEM4	PF02602.10	gi|379003653|ref|YP_005259325.1|	-	0.028	13.6	0.2	0.23	10.6	0.0	2.4	2	0	0	2	2	2	0	Uroporphyrinogen-III	synthase	HemD
DUF429	PF04250.8	gi|379003653|ref|YP_005259325.1|	-	0.033	13.4	0.1	0.07	12.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF429)
ResIII	PF04851.10	gi|379003653|ref|YP_005259325.1|	-	0.046	13.5	0.0	0.085	12.6	0.0	1.4	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
HemN_C	PF06969.11	gi|379003653|ref|YP_005259325.1|	-	0.1	12.6	0.0	0.31	11.1	0.0	1.9	1	0	0	1	1	1	0	HemN	C-terminal	domain
UPF0547	PF10571.4	gi|379003655|ref|YP_005259327.1|	-	1.2e-13	50.5	4.2	1.7e-13	49.9	2.9	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|379003655|ref|YP_005259327.1|	-	0.0001	21.8	4.0	0.00021	20.9	2.5	1.8	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379003655|ref|YP_005259327.1|	-	0.00011	21.7	4.2	0.00023	20.6	2.7	1.8	1	1	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003655|ref|YP_005259327.1|	-	0.00025	20.1	3.8	0.0015	17.7	2.6	2.0	1	1	1	2	2	2	2	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|379003655|ref|YP_005259327.1|	-	0.0021	17.5	4.8	0.083	12.4	0.1	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ISL3	PF14690.1	gi|379003655|ref|YP_005259327.1|	-	0.0022	17.9	2.8	0.26	11.3	0.2	2.3	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-FPG_IleRS	PF06827.9	gi|379003655|ref|YP_005259327.1|	-	0.0053	16.3	2.8	0.54	9.9	0.1	2.3	2	0	0	2	2	2	1	Zinc	finger	found	in	FPG	and	IleRS
DUF164	PF02591.10	gi|379003655|ref|YP_005259327.1|	-	0.0063	16.3	0.7	0.01	15.6	0.5	1.4	1	0	0	1	1	1	1	Putative	zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|379003655|ref|YP_005259327.1|	-	0.012	14.7	1.8	0.019	14.1	1.3	1.3	1	0	0	1	1	1	0	Transcription	factor	zinc-finger
DUF35_N	PF12172.3	gi|379003655|ref|YP_005259327.1|	-	0.013	15.4	4.1	0.29	11.0	0.1	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.2	gi|379003655|ref|YP_005259327.1|	-	0.016	15.0	2.3	0.048	13.4	1.6	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
Auto_anti-p27	PF06677.7	gi|379003655|ref|YP_005259327.1|	-	0.018	14.8	0.3	5.1	6.9	0.0	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
IBR	PF01485.16	gi|379003655|ref|YP_005259327.1|	-	0.018	14.8	0.1	0.026	14.3	0.1	1.3	1	0	0	1	1	1	0	IBR	domain
zf-LITAF-like	PF10601.4	gi|379003655|ref|YP_005259327.1|	-	0.022	14.6	1.6	2.7	7.9	0.1	2.2	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
RRN7	PF11781.3	gi|379003655|ref|YP_005259327.1|	-	0.024	14.1	1.9	0.059	12.8	1.3	1.7	1	1	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF329	PF03884.9	gi|379003655|ref|YP_005259327.1|	-	0.027	13.9	0.8	2.4	7.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-RING_4	PF14570.1	gi|379003655|ref|YP_005259327.1|	-	0.031	13.8	1.4	1.7	8.2	0.2	2.2	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-H2C2_2	PF13465.1	gi|379003655|ref|YP_005259327.1|	-	0.036	14.3	1.6	4.7	7.6	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
Nudix_N_2	PF14803.1	gi|379003655|ref|YP_005259327.1|	-	0.037	13.7	2.7	3.6	7.3	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zinc_ribbon_2	PF13240.1	gi|379003655|ref|YP_005259327.1|	-	0.048	13.1	7.4	1.1	8.8	5.1	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|379003655|ref|YP_005259327.1|	-	0.059	13.7	1.6	0.7	10.3	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-FCS	PF06467.9	gi|379003655|ref|YP_005259327.1|	-	0.065	12.8	1.1	0.36	10.4	0.1	2.1	2	0	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
DiS_P_DiS	PF06750.8	gi|379003655|ref|YP_005259327.1|	-	0.071	12.9	1.4	2	8.2	0.1	2.1	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003655|ref|YP_005259327.1|	-	0.084	12.6	7.2	0.24	11.2	1.8	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
RNHCP	PF12647.2	gi|379003655|ref|YP_005259327.1|	-	0.092	12.5	4.9	2.9	7.7	0.1	2.1	1	1	1	2	2	2	0	RNHCP	domain
Zn_Tnp_IS91	PF14319.1	gi|379003655|ref|YP_005259327.1|	-	0.13	11.7	2.4	0.35	10.3	1.7	1.7	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
OrfB_Zn_ribbon	PF07282.6	gi|379003655|ref|YP_005259327.1|	-	0.17	11.5	2.2	0.41	10.3	1.5	1.6	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
Cys_rich_CPXG	PF14255.1	gi|379003655|ref|YP_005259327.1|	-	0.19	11.5	3.5	0.72	9.7	0.5	2.1	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
YwqJ-deaminase	PF14431.1	gi|379003655|ref|YP_005259327.1|	-	0.34	10.7	1.7	4.5	7.1	0.1	2.0	1	1	1	2	2	2	0	YwqJ-like	deaminase
zf-C3HC4_3	PF13920.1	gi|379003655|ref|YP_005259327.1|	-	0.38	10.4	4.4	2.1	8.1	0.8	2.3	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
TFIIS_C	PF01096.13	gi|379003655|ref|YP_005259327.1|	-	0.42	10.3	0.0	0.42	10.3	0.0	2.4	3	0	0	3	3	2	0	Transcription	factor	S-II	(TFIIS)
RecR	PF02132.10	gi|379003655|ref|YP_005259327.1|	-	0.48	9.9	4.1	7.5	6.0	0.3	2.2	1	1	1	2	2	2	0	RecR	protein
Ogr_Delta	PF04606.7	gi|379003655|ref|YP_005259327.1|	-	0.48	10.1	4.6	1.7	8.3	0.2	2.3	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF951	PF06107.6	gi|379003655|ref|YP_005259327.1|	-	0.56	9.7	2.6	1	8.9	1.1	1.7	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF951)
CpXC	PF14353.1	gi|379003655|ref|YP_005259327.1|	-	0.56	10.1	3.8	7.3	6.5	0.3	2.1	1	1	0	2	2	2	0	CpXC	protein
Zn-ribbon_8	PF09723.5	gi|379003655|ref|YP_005259327.1|	-	0.67	9.9	4.8	7.7	6.5	3.4	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|379003655|ref|YP_005259327.1|	-	1.1	9.2	0.1	1.1	9.2	0.0	2.4	3	0	0	3	3	2	0	C2H2-type	zinc	finger
zf-RING_3	PF14369.1	gi|379003655|ref|YP_005259327.1|	-	1.5	8.9	5.9	23	5.0	3.9	2.2	1	1	1	2	2	2	0	zinc-finger
zf-tcix	PF14952.1	gi|379003655|ref|YP_005259327.1|	-	1.5	8.2	5.2	0.66	9.3	0.1	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Lar_restr_allev	PF14354.1	gi|379003655|ref|YP_005259327.1|	-	1.8	8.9	4.4	3.5	8.0	0.5	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-IS66	PF13005.2	gi|379003655|ref|YP_005259327.1|	-	2.5	8.1	6.6	3.2	7.8	0.3	2.4	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.7	gi|379003655|ref|YP_005259327.1|	-	3.6	6.9	7.4	7.7	5.9	0.3	2.2	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-RING_2	PF13639.1	gi|379003655|ref|YP_005259327.1|	-	8.7	6.2	9.0	40	4.1	1.4	2.1	1	1	1	2	2	2	0	Ring	finger	domain
Lon_2	PF13337.1	gi|379003657|ref|YP_005259329.1|	-	6.4e-153	509.3	0.0	7.2e-153	509.2	0.0	1.0	1	0	0	1	1	1	1	Putative	ATP-dependent	Lon	protease
AAA_14	PF13173.1	gi|379003657|ref|YP_005259329.1|	-	0.029	14.2	0.0	0.094	12.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
Methyltransf_26	PF13659.1	gi|379003658|ref|YP_005259330.1|	-	2.1e-14	53.5	0.7	7.5e-14	51.7	0.5	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|379003658|ref|YP_005259330.1|	-	1.7e-06	27.3	0.0	0.00018	20.7	0.0	2.4	2	0	0	2	2	2	2	N-6	DNA	Methylase
Eco57I	PF07669.6	gi|379003658|ref|YP_005259330.1|	-	6.4e-05	23.2	0.0	0.00017	21.9	0.0	1.6	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
UPF0020	PF01170.13	gi|379003658|ref|YP_005259330.1|	-	0.00057	19.5	0.0	0.036	13.6	0.0	2.5	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
TaqI_C	PF12950.2	gi|379003658|ref|YP_005259330.1|	-	0.0019	17.9	0.0	0.011	15.4	0.0	2.3	1	1	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
DUF4618	PF15397.1	gi|379003658|ref|YP_005259330.1|	-	0.13	11.5	0.2	0.3	10.3	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
TF_Zn_Ribbon	PF08271.7	gi|379003659|ref|YP_005259331.1|	-	0.00019	20.6	1.9	0.051	12.8	0.2	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-TFIIB	PF13453.1	gi|379003659|ref|YP_005259331.1|	-	0.0011	18.0	1.1	0.0016	17.5	0.8	1.2	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.2	gi|379003659|ref|YP_005259331.1|	-	0.0015	18.2	2.7	0.0023	17.6	1.8	1.4	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003659|ref|YP_005259331.1|	-	0.0021	17.2	3.6	0.072	12.3	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379003659|ref|YP_005259331.1|	-	0.0032	17.3	4.7	0.4	10.6	0.3	2.2	2	0	0	2	2	2	2	Zinc	ribbon	domain
Lar_restr_allev	PF14354.1	gi|379003659|ref|YP_005259331.1|	-	0.0034	17.6	0.5	0.0039	17.4	0.3	1.2	1	0	0	1	1	1	1	Restriction	alleviation	protein	Lar
Elf1	PF05129.8	gi|379003659|ref|YP_005259331.1|	-	0.0075	15.9	0.1	0.0084	15.7	0.1	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Cren7	PF11520.3	gi|379003659|ref|YP_005259331.1|	-	0.018	14.6	0.2	0.037	13.6	0.1	1.6	1	1	1	2	2	2	0	Chromatin	protein	Cren7
TFIIS_C	PF01096.13	gi|379003659|ref|YP_005259331.1|	-	0.021	14.4	3.6	1.7	8.3	0.2	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
GFA	PF04828.9	gi|379003659|ref|YP_005259331.1|	-	0.027	14.4	1.2	0.042	13.7	0.0	1.7	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF35_N	PF12172.3	gi|379003659|ref|YP_005259331.1|	-	0.033	14.1	1.4	5.5	7.0	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.2	gi|379003659|ref|YP_005259331.1|	-	0.053	13.3	1.0	0.1	12.4	0.7	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
A2L_zn_ribbon	PF08792.5	gi|379003659|ref|YP_005259331.1|	-	0.054	12.9	3.1	2.4	7.7	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Terminase_GpA	PF05876.7	gi|379003659|ref|YP_005259331.1|	-	0.055	11.8	0.3	0.055	11.8	0.2	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
zf-C2H2_4	PF13894.1	gi|379003659|ref|YP_005259331.1|	-	0.064	13.6	1.1	6.9	7.2	0.0	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-C2H2	PF00096.21	gi|379003659|ref|YP_005259331.1|	-	0.073	13.4	2.3	9.6	6.7	0.2	2.4	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DUF2310	PF10071.4	gi|379003659|ref|YP_005259331.1|	-	0.074	12.0	0.4	0.085	11.7	0.3	1.1	1	0	0	1	1	1	0	Zn-ribbon-containing,	possibly	nucleic-acid-binding	protein	(DUF2310)
zf-IS66	PF13005.2	gi|379003659|ref|YP_005259331.1|	-	0.075	13.0	0.7	9.1	6.3	0.1	2.3	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
HypA	PF01155.14	gi|379003659|ref|YP_005259331.1|	-	0.075	12.7	0.4	5.2	6.7	0.0	2.0	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_5	PF13719.1	gi|379003659|ref|YP_005259331.1|	-	0.11	12.1	2.5	2	8.0	1.7	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003659|ref|YP_005259331.1|	-	0.14	11.9	2.4	2.6	7.8	1.7	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|379003659|ref|YP_005259331.1|	-	0.15	11.6	1.5	1	8.9	0.3	2.1	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
DUF3797	PF12677.2	gi|379003659|ref|YP_005259331.1|	-	0.15	11.6	1.3	5.3	6.7	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Rubredoxin	PF00301.15	gi|379003659|ref|YP_005259331.1|	-	0.22	11.4	2.0	12	5.8	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin
OrfB_Zn_ribbon	PF07282.6	gi|379003659|ref|YP_005259331.1|	-	0.28	10.8	2.7	0.89	9.2	1.8	1.8	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prim_Zn_Ribbon	PF08273.7	gi|379003659|ref|YP_005259331.1|	-	0.31	11.1	2.6	11	6.1	0.2	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Auto_anti-p27	PF06677.7	gi|379003659|ref|YP_005259331.1|	-	0.43	10.3	3.9	0.9	9.3	0.3	2.1	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Zn_Tnp_IS1	PF03811.8	gi|379003659|ref|YP_005259331.1|	-	0.75	9.3	3.7	8.1	6.0	0.2	2.3	2	0	0	2	2	2	0	InsA	N-terminal	domain
zinc_ribbon_2	PF13240.1	gi|379003659|ref|YP_005259331.1|	-	0.84	9.2	9.3	0.44	10.1	0.5	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
PyrI_C	PF02748.10	gi|379003659|ref|YP_005259331.1|	-	0.98	8.9	4.3	19	4.7	2.9	2.1	1	1	0	1	1	1	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-H2C2_2	PF13465.1	gi|379003659|ref|YP_005259331.1|	-	1.5	9.2	6.0	5.6	7.4	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-CHCC	PF10276.4	gi|379003659|ref|YP_005259331.1|	-	2.1	8.2	5.5	2.2	8.2	0.5	2.2	2	0	0	2	2	2	0	Zinc-finger	domain
DUF1610	PF07754.6	gi|379003659|ref|YP_005259331.1|	-	2.1	8.5	7.6	2.3	8.4	0.5	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
Desulfoferrod_N	PF06397.7	gi|379003659|ref|YP_005259331.1|	-	3	7.3	5.2	4.8	6.6	0.7	2.2	2	0	0	2	2	2	0	Desulfoferrodoxin,	N-terminal	domain
zf-ISL3	PF14690.1	gi|379003659|ref|YP_005259331.1|	-	3.8	7.6	9.9	47	4.1	2.2	2.5	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Methyltransf_26	PF13659.1	gi|379003660|ref|YP_005259332.1|	-	1.9e-20	73.0	0.3	4.5e-20	71.8	0.1	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003660|ref|YP_005259332.1|	-	2.5e-10	40.9	0.0	6.2e-10	39.6	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
TaqI_C	PF12950.2	gi|379003660|ref|YP_005259332.1|	-	8e-09	35.2	0.0	1.3e-08	34.5	0.0	1.3	1	0	0	1	1	1	1	TaqI-like	C-terminal	specificity	domain
Eco57I	PF07669.6	gi|379003660|ref|YP_005259332.1|	-	2.3e-08	34.3	0.0	3.8e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	Eco57I	restriction-modification	methylase
Methyltransf_31	PF13847.1	gi|379003660|ref|YP_005259332.1|	-	2.5e-06	27.1	0.0	3.9e-06	26.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379003660|ref|YP_005259332.1|	-	3.4e-06	26.5	0.0	5.5e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.1	gi|379003660|ref|YP_005259332.1|	-	8.2e-06	25.6	0.0	1.9e-05	24.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003660|ref|YP_005259332.1|	-	1.5e-05	25.2	0.0	3.4e-05	24.1	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003660|ref|YP_005259332.1|	-	0.0019	18.6	0.0	0.0087	16.5	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379003660|ref|YP_005259332.1|	-	0.011	16.1	0.1	0.13	12.7	0.0	2.3	2	0	0	2	2	2	0	Methyltransferase	domain
N6_Mtase	PF02384.11	gi|379003660|ref|YP_005259332.1|	-	0.012	14.6	0.0	0.018	14.1	0.0	1.2	1	0	0	1	1	1	0	N-6	DNA	Methylase
UPF0020	PF01170.13	gi|379003660|ref|YP_005259332.1|	-	0.056	13.0	0.0	0.11	12.0	0.0	1.5	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
DUF4443	PF14544.1	gi|379003660|ref|YP_005259332.1|	-	0.11	12.3	0.0	0.24	11.2	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4443)
PCMT	PF01135.14	gi|379003660|ref|YP_005259332.1|	-	0.14	11.6	0.0	0.3	10.6	0.0	1.4	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DUF506	PF04720.7	gi|379003661|ref|YP_005259333.1|	-	0.12	12.0	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF506)
EVE	PF01878.13	gi|379003662|ref|YP_005259334.1|	-	5.9e-13	49.0	0.0	1.8e-12	47.5	0.0	1.8	2	0	0	2	2	2	1	EVE	domain
ATP_bind_3	PF01171.15	gi|379003663|ref|YP_005259335.1|	-	2.9e-12	46.4	0.0	5.9e-12	45.4	0.0	1.5	1	1	0	1	1	1	1	PP-loop	family
PAPS_reduct	PF01507.14	gi|379003663|ref|YP_005259335.1|	-	0.00024	20.9	0.0	0.048	13.4	0.0	2.3	2	0	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
RecR	PF02132.10	gi|379003663|ref|YP_005259335.1|	-	0.00024	20.4	0.6	0.00024	20.4	0.4	3.0	3	0	0	3	3	3	1	RecR	protein
tRNA_Me_trans	PF03054.11	gi|379003663|ref|YP_005259335.1|	-	0.012	14.2	0.0	0.017	13.6	0.0	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|379003663|ref|YP_005259335.1|	-	0.044	13.2	0.0	0.071	12.5	0.0	1.3	1	0	0	1	1	1	0	Asparagine	synthase
DUF2392	PF10288.4	gi|379003663|ref|YP_005259335.1|	-	0.14	12.4	0.0	0.37	11.1	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2392)
zf-B_box	PF00643.19	gi|379003663|ref|YP_005259335.1|	-	0.45	10.4	3.7	4.7	7.1	0.1	2.3	2	0	0	2	2	2	0	B-box	zinc	finger
DZR	PF12773.2	gi|379003663|ref|YP_005259335.1|	-	2.8	7.8	5.6	9.5	6.1	0.5	2.4	2	0	0	2	2	2	0	Double	zinc	ribbon
ACT	PF01842.20	gi|379003664|ref|YP_005259336.1|	-	6e-11	41.5	0.7	1.9e-10	40.0	0.2	2.0	2	1	1	3	3	3	1	ACT	domain
ACT_4	PF13291.1	gi|379003664|ref|YP_005259336.1|	-	2.4e-07	31.0	0.5	4.7e-07	30.0	0.3	1.4	1	0	0	1	1	1	1	ACT	domain
ACT_6	PF13740.1	gi|379003664|ref|YP_005259336.1|	-	0.0003	20.4	0.2	0.0011	18.6	0.0	1.8	2	0	0	2	2	2	1	ACT	domain
ACT_7	PF13840.1	gi|379003664|ref|YP_005259336.1|	-	0.0023	17.4	0.1	0.0044	16.5	0.0	1.4	1	0	0	1	1	1	1	ACT	domain
SBP_bac_11	PF13531.1	gi|379003665|ref|YP_005259337.1|	-	0.0013	18.4	0.2	0.0029	17.2	0.1	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
ABC_tran	PF00005.22	gi|379003667|ref|YP_005259339.1|	-	1.8e-19	70.4	0.0	2.5e-19	69.9	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003667|ref|YP_005259339.1|	-	2.1e-13	50.9	0.0	5.2e-06	26.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379003667|ref|YP_005259339.1|	-	1.2e-09	37.7	0.0	0.00075	18.7	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379003667|ref|YP_005259339.1|	-	1.6e-05	24.2	0.0	2.7e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|379003667|ref|YP_005259339.1|	-	4.2e-05	23.4	0.0	0.00011	22.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379003667|ref|YP_005259339.1|	-	0.00015	22.1	0.0	0.00021	21.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003667|ref|YP_005259339.1|	-	0.00015	21.4	0.3	0.00075	19.1	0.0	2.1	2	1	0	2	2	2	1	Part	of	AAA	domain
MobB	PF03205.9	gi|379003667|ref|YP_005259339.1|	-	0.00025	20.7	0.0	0.00041	20.0	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_15	PF13175.1	gi|379003667|ref|YP_005259339.1|	-	0.00058	19.0	0.0	0.05	12.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_30	PF13604.1	gi|379003667|ref|YP_005259339.1|	-	0.002	17.7	0.0	0.0033	17.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
T2SE	PF00437.15	gi|379003667|ref|YP_005259339.1|	-	0.0038	16.1	0.0	0.0053	15.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_16	PF13191.1	gi|379003667|ref|YP_005259339.1|	-	0.0057	16.6	0.1	0.0083	16.1	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379003667|ref|YP_005259339.1|	-	0.0068	15.8	0.0	0.036	13.4	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
NTPase_1	PF03266.10	gi|379003667|ref|YP_005259339.1|	-	0.0071	16.0	0.0	0.028	14.1	0.0	1.9	2	0	0	2	2	2	1	NTPase
NACHT	PF05729.7	gi|379003667|ref|YP_005259339.1|	-	0.008	15.8	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
NB-ARC	PF00931.17	gi|379003667|ref|YP_005259339.1|	-	0.019	13.8	0.0	0.031	13.1	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_17	PF13207.1	gi|379003667|ref|YP_005259339.1|	-	0.02	15.7	0.1	0.047	14.4	0.0	1.7	2	1	0	2	2	1	0	AAA	domain
AAA_22	PF13401.1	gi|379003667|ref|YP_005259339.1|	-	0.021	14.9	0.0	0.035	14.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|379003667|ref|YP_005259339.1|	-	0.024	14.0	0.0	0.043	13.2	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
HyaE	PF07449.6	gi|379003667|ref|YP_005259339.1|	-	0.025	14.4	0.0	0.047	13.5	0.0	1.4	1	0	0	1	1	1	0	Hydrogenase-1	expression	protein	HyaE
DUF3584	PF12128.3	gi|379003667|ref|YP_005259339.1|	-	0.033	11.5	0.1	0.045	11.0	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Miro	PF08477.8	gi|379003667|ref|YP_005259339.1|	-	0.047	14.1	0.1	0.077	13.5	0.1	1.3	1	0	0	1	1	1	0	Miro-like	protein
Arch_ATPase	PF01637.13	gi|379003667|ref|YP_005259339.1|	-	0.056	13.1	0.0	0.088	12.4	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_28	PF13521.1	gi|379003667|ref|YP_005259339.1|	-	0.058	13.3	0.0	0.43	10.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|379003667|ref|YP_005259339.1|	-	0.065	12.8	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
ATP_bind_1	PF03029.12	gi|379003667|ref|YP_005259339.1|	-	0.086	12.3	0.1	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Preseq_ALAS	PF09029.5	gi|379003667|ref|YP_005259339.1|	-	0.098	12.6	0.0	0.3	11.0	0.0	1.8	1	1	1	2	2	2	0	5-aminolevulinate	synthase	presequence
cobW	PF02492.14	gi|379003667|ref|YP_005259339.1|	-	0.11	11.9	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Arc_trans_TRASH	PF08394.5	gi|379003669|ref|YP_005259341.1|	-	2e-05	24.6	5.0	2.9e-05	24.1	3.5	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|379003669|ref|YP_005259341.1|	-	0.00058	19.4	6.9	0.00096	18.7	4.8	1.5	1	1	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zinc_ribbon_5	PF13719.1	gi|379003669|ref|YP_005259341.1|	-	0.05	13.1	0.1	0.05	13.1	0.0	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003669|ref|YP_005259341.1|	-	0.055	13.1	0.1	0.055	13.1	0.0	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_6	PF14835.1	gi|379003669|ref|YP_005259341.1|	-	0.061	13.1	1.2	0.085	12.6	0.8	1.4	1	0	0	1	1	1	0	zf-RING	of	BARD1-type	protein
zf-SNAP50_C	PF12251.3	gi|379003669|ref|YP_005259341.1|	-	0.09	12.1	1.6	0.095	12.0	1.1	1.0	1	0	0	1	1	1	0	snRNA-activating	protein	of	50kDa	MW	C	terminal
zf-MYND	PF01753.13	gi|379003669|ref|YP_005259341.1|	-	0.11	12.4	3.9	0.17	11.7	2.7	1.4	1	1	0	1	1	1	0	MYND	finger
zf-ribbon_3	PF13248.1	gi|379003669|ref|YP_005259341.1|	-	0.15	11.3	1.5	0.32	10.2	1.0	1.6	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|379003669|ref|YP_005259341.1|	-	3.2	7.4	6.8	12	5.6	4.7	1.9	1	1	0	1	1	1	0	HIT	zinc	finger
DUF3330	PF11809.3	gi|379003669|ref|YP_005259341.1|	-	4.5	7.2	9.1	15	5.5	6.3	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3330)
zf-C2HC5	PF06221.8	gi|379003669|ref|YP_005259341.1|	-	5.2	6.9	6.9	14	5.5	4.8	1.7	1	1	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
Thi4	PF01946.12	gi|379003670|ref|YP_005259342.1|	-	4.6e-77	258.1	0.0	5.7e-77	257.8	0.0	1.1	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.19	gi|379003670|ref|YP_005259342.1|	-	6e-15	55.0	0.6	1.6e-08	33.9	0.1	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|379003670|ref|YP_005259342.1|	-	1.2e-10	41.2	0.4	3.1e-10	39.9	0.3	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|379003670|ref|YP_005259342.1|	-	1.3e-09	37.3	0.3	4.5e-06	25.7	0.0	3.0	3	0	0	3	3	3	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|379003670|ref|YP_005259342.1|	-	3.3e-07	29.6	0.0	5.1e-07	29.0	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|379003670|ref|YP_005259342.1|	-	1.1e-06	28.0	0.1	1.5e-06	27.5	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379003670|ref|YP_005259342.1|	-	1.4e-06	28.3	0.2	2.3e-06	27.6	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379003670|ref|YP_005259342.1|	-	4.2e-06	26.9	0.1	1.1e-05	25.6	0.1	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|379003670|ref|YP_005259342.1|	-	1e-05	24.2	0.2	1.6e-05	23.6	0.2	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Amino_oxidase	PF01593.19	gi|379003670|ref|YP_005259342.1|	-	6.5e-05	22.1	0.0	9.2e-05	21.6	0.0	1.2	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
Pyr_redox	PF00070.22	gi|379003670|ref|YP_005259342.1|	-	0.00043	20.6	0.1	0.0041	17.4	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379003670|ref|YP_005259342.1|	-	0.0011	18.7	1.0	0.0018	18.0	0.1	1.7	2	0	0	2	2	2	1	FAD-NAD(P)-binding
GIDA	PF01134.17	gi|379003670|ref|YP_005259342.1|	-	0.0038	16.1	0.1	0.0063	15.4	0.1	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_Gly3P_dh_N	PF01210.18	gi|379003670|ref|YP_005259342.1|	-	0.017	14.8	0.1	0.037	13.7	0.0	1.6	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Trp_halogenase	PF04820.9	gi|379003670|ref|YP_005259342.1|	-	0.02	13.5	0.0	0.041	12.5	0.0	1.5	2	0	0	2	2	2	0	Tryptophan	halogenase
Shikimate_DH	PF01488.15	gi|379003670|ref|YP_005259342.1|	-	0.025	14.6	0.0	0.052	13.6	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Lycopene_cycl	PF05834.7	gi|379003670|ref|YP_005259342.1|	-	0.031	13.2	0.0	0.073	11.9	0.0	1.6	2	0	0	2	2	2	0	Lycopene	cyclase	protein
3HCDH_N	PF02737.13	gi|379003670|ref|YP_005259342.1|	-	0.075	12.6	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|379003670|ref|YP_005259342.1|	-	0.085	12.0	0.0	0.18	10.9	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.16	gi|379003670|ref|YP_005259342.1|	-	0.11	12.3	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	ThiF	family
tRNA-synt_1	PF00133.17	gi|379003671|ref|YP_005259343.1|	-	4e-105	352.0	0.0	2.6e-104	349.3	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|379003671|ref|YP_005259343.1|	-	1e-29	103.2	0.5	1.8e-29	102.4	0.4	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|379003671|ref|YP_005259343.1|	-	1.8e-24	86.1	0.1	6.3e-14	51.4	0.0	3.3	3	0	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|379003671|ref|YP_005259343.1|	-	0.00045	19.5	0.0	0.023	14.0	0.0	2.5	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
BPD_transp_1	PF00528.17	gi|379003672|ref|YP_005259344.1|	-	1.9e-38	131.8	14.6	1.9e-38	131.8	10.1	2.2	2	0	0	2	2	2	2	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379003673|ref|YP_005259345.1|	-	2.1e-24	86.0	10.7	2.1e-24	86.0	7.4	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|379003673|ref|YP_005259345.1|	-	0.0001	21.6	0.9	0.0001	21.6	0.6	3.7	5	1	0	5	5	5	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
SBP_bac_5	PF00496.17	gi|379003674|ref|YP_005259346.1|	-	3.5e-96	322.2	0.6	5.4e-96	321.6	0.4	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Sec61_beta	PF03911.11	gi|379003675|ref|YP_005259347.1|	-	8.3e-12	44.7	0.8	9.4e-12	44.5	0.6	1.1	1	0	0	1	1	1	1	Sec61beta	family
TauE	PF01925.14	gi|379003676|ref|YP_005259348.1|	-	3.3e-40	138.0	41.4	3.8e-40	137.8	28.7	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
UPF0154	PF03672.8	gi|379003676|ref|YP_005259348.1|	-	0.22	11.1	1.5	0.59	9.7	0.0	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0154)
MFS_1	PF07690.11	gi|379003678|ref|YP_005259350.1|	-	1e-33	116.5	49.1	2.4e-19	69.2	13.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|379003678|ref|YP_005259350.1|	-	4.2e-08	31.7	29.3	5.6e-08	31.3	20.3	1.1	1	0	0	1	1	1	1	Transmembrane	secretion	effector
MFS_1_like	PF12832.2	gi|379003678|ref|YP_005259350.1|	-	0.11	12.3	0.2	0.11	12.3	0.2	3.9	5	0	0	5	5	5	0	MFS_1	like	family
Usp	PF00582.21	gi|379003679|ref|YP_005259351.1|	-	2.7e-36	124.8	1.4	3e-36	124.7	1.0	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
ETF	PF01012.16	gi|379003679|ref|YP_005259351.1|	-	0.097	12.3	0.3	0.15	11.8	0.2	1.4	1	1	0	1	1	1	0	Electron	transfer	flavoprotein	domain
CBS	PF00571.23	gi|379003680|ref|YP_005259352.1|	-	2e-31	107.4	3.8	2e-16	59.5	0.2	2.1	2	0	0	2	2	2	2	CBS	domain
HTH_21	PF13276.1	gi|379003680|ref|YP_005259352.1|	-	0.019	14.9	2.0	0.068	13.1	0.4	2.3	2	1	0	2	2	2	0	HTH-like	domain
Acetyltransf_10	PF13673.1	gi|379003680|ref|YP_005259352.1|	-	0.092	12.8	0.0	3	7.9	0.0	2.1	1	1	1	2	2	2	0	Acetyltransferase	(GNAT)	domain
Cob_adeno_trans	PF01923.13	gi|379003681|ref|YP_005259353.1|	-	2.4e-11	43.6	0.0	7.2e-11	42.1	0.0	1.6	1	1	0	1	1	1	1	Cobalamin	adenosyltransferase
Cys_Met_Meta_PP	PF01053.15	gi|379003683|ref|YP_005259355.1|	-	1e-117	392.7	0.0	1.2e-117	392.5	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|379003683|ref|YP_005259355.1|	-	0.011	14.5	0.0	0.014	14.1	0.0	1.1	1	0	0	1	1	1	0	Aminotransferase	class-V
GDC-P	PF02347.11	gi|379003683|ref|YP_005259355.1|	-	0.049	12.3	0.0	0.072	11.7	0.0	1.2	1	0	0	1	1	1	0	Glycine	cleavage	system	P-protein
Urocanase	PF01175.13	gi|379003684|ref|YP_005259356.1|	-	1.8e-238	792.0	0.0	2.3e-238	791.7	0.0	1.1	1	0	0	1	1	1	1	Urocanase
Amidohydro_4	PF13147.1	gi|379003685|ref|YP_005259357.1|	-	6e-18	65.8	0.0	3.2e-16	60.1	0.0	2.2	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_3	PF07969.6	gi|379003685|ref|YP_005259357.1|	-	7.4e-17	61.6	0.1	1.4e-12	47.5	0.0	2.5	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_1	PF01979.15	gi|379003685|ref|YP_005259357.1|	-	5.4e-12	46.0	0.0	3.1e-10	40.2	0.0	2.4	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|379003685|ref|YP_005259357.1|	-	9.4e-11	41.3	0.0	2.3e-10	40.1	0.0	1.7	1	1	0	1	1	1	1	Amidohydrolase
Lyase_aromatic	PF00221.14	gi|379003686|ref|YP_005259358.1|	-	9.3e-139	462.8	0.0	1.1e-138	462.7	0.0	1.0	1	0	0	1	1	1	1	Aromatic	amino	acid	lyase
HlyC	PF02794.11	gi|379003686|ref|YP_005259358.1|	-	0.11	12.0	0.1	0.28	10.7	0.0	1.6	2	0	0	2	2	2	0	RTX	toxin	acyltransferase	family
Arginase	PF00491.16	gi|379003687|ref|YP_005259359.1|	-	8.9e-64	215.4	0.0	1.1e-63	215.1	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
DUF3322	PF11795.3	gi|379003687|ref|YP_005259359.1|	-	0.0039	16.8	0.0	0.0065	16.1	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
DUF2029	PF09594.5	gi|379003690|ref|YP_005259362.1|	-	0.03	13.8	0.7	0.04	13.4	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2029)
RHH_1	PF01402.16	gi|379003695|ref|YP_005259367.1|	-	6.7e-06	25.7	0.3	1.2e-05	24.9	0.2	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
PhdYeFM_antitox	PF02604.14	gi|379003695|ref|YP_005259367.1|	-	0.096	12.2	0.2	0.15	11.6	0.1	1.5	1	1	0	1	1	1	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
IncA	PF04156.9	gi|379003696|ref|YP_005259368.1|	-	1.2e-08	34.7	1.7	1.2e-08	34.7	1.1	2.6	3	0	0	3	3	2	1	IncA	protein
Myosin_tail_1	PF01576.14	gi|379003696|ref|YP_005259368.1|	-	1e-07	30.1	10.6	1.3e-07	29.7	7.4	1.0	1	0	0	1	1	1	1	Myosin	tail
GAS	PF13851.1	gi|379003696|ref|YP_005259368.1|	-	3.8e-05	22.9	17.8	0.00022	20.5	12.4	1.9	1	1	0	1	1	1	1	Growth-arrest	specific	micro-tubule	binding
CENP-F_leu_zip	PF10473.4	gi|379003696|ref|YP_005259368.1|	-	0.00017	21.4	17.2	0.0032	17.3	2.4	2.2	1	1	1	2	2	2	2	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
ERM	PF00769.14	gi|379003696|ref|YP_005259368.1|	-	0.00021	20.9	14.3	0.00029	20.4	9.9	1.1	1	0	0	1	1	1	1	Ezrin/radixin/moesin	family
TMF_DNA_bd	PF12329.3	gi|379003696|ref|YP_005259368.1|	-	0.00041	20.0	26.1	0.036	13.8	4.6	2.1	1	1	1	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
FlaC_arch	PF05377.6	gi|379003696|ref|YP_005259368.1|	-	0.001	18.9	2.2	11	6.0	0.0	3.4	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
WEMBL	PF05701.6	gi|379003696|ref|YP_005259368.1|	-	0.001	17.6	17.8	0.0014	17.2	12.3	1.1	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
Spc7	PF08317.6	gi|379003696|ref|YP_005259368.1|	-	0.0018	17.0	10.2	0.0028	16.3	7.1	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Filament	PF00038.16	gi|379003696|ref|YP_005259368.1|	-	0.0019	17.7	15.9	0.17	11.3	1.5	2.1	1	1	1	2	2	2	2	Intermediate	filament	protein
AAA_13	PF13166.1	gi|379003696|ref|YP_005259368.1|	-	0.0026	16.3	6.2	0.0044	15.5	4.3	1.3	1	0	0	1	1	1	1	AAA	domain
Tropomyosin_1	PF12718.2	gi|379003696|ref|YP_005259368.1|	-	0.0033	17.2	18.0	0.0051	16.6	8.7	2.2	1	1	1	2	2	2	2	Tropomyosin	like
DUF724	PF05266.9	gi|379003696|ref|YP_005259368.1|	-	0.0037	16.9	6.1	0.0037	16.9	4.3	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF724)
Reo_sigmaC	PF04582.7	gi|379003696|ref|YP_005259368.1|	-	0.0041	16.3	6.2	0.012	14.8	3.4	1.8	1	1	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
DUF972	PF06156.8	gi|379003696|ref|YP_005259368.1|	-	0.0041	17.4	11.5	0.038	14.3	0.9	2.2	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF972)
CCDC144C	PF14915.1	gi|379003696|ref|YP_005259368.1|	-	0.0041	16.0	13.8	0.0056	15.6	9.5	1.1	1	0	0	1	1	1	1	CCDC144C	protein	coiled-coil	region
DUF869	PF05911.6	gi|379003696|ref|YP_005259368.1|	-	0.0044	15.3	10.5	0.006	14.8	7.3	1.1	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
FUSC	PF04632.7	gi|379003696|ref|YP_005259368.1|	-	0.006	15.0	11.7	0.0087	14.5	8.1	1.2	1	0	0	1	1	1	1	Fusaric	acid	resistance	protein	family
DUF2968	PF11180.3	gi|379003696|ref|YP_005259368.1|	-	0.0077	15.6	26.7	0.025	13.9	18.5	1.7	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2968)
FH2	PF02181.18	gi|379003696|ref|YP_005259368.1|	-	0.011	14.6	3.6	0.018	13.9	2.5	1.3	1	0	0	1	1	1	0	Formin	Homology	2	Domain
Laminin_I	PF06008.9	gi|379003696|ref|YP_005259368.1|	-	0.017	14.4	16.6	0.023	13.9	11.5	1.1	1	0	0	1	1	1	0	Laminin	Domain	I
APG6	PF04111.7	gi|379003696|ref|YP_005259368.1|	-	0.018	14.0	18.0	0.026	13.5	12.4	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Baculo_PEP_C	PF04513.7	gi|379003696|ref|YP_005259368.1|	-	0.019	14.8	12.0	0.081	12.7	8.3	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
zf-C4H2	PF10146.4	gi|379003696|ref|YP_005259368.1|	-	0.019	14.9	2.7	0.028	14.4	1.9	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
CALCOCO1	PF07888.6	gi|379003696|ref|YP_005259368.1|	-	0.02	13.2	11.2	0.03	12.6	7.8	1.2	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Fez1	PF06818.10	gi|379003696|ref|YP_005259368.1|	-	0.021	14.8	14.7	0.036	14.1	10.2	1.3	1	0	0	1	1	1	0	Fez1
DUF641	PF04859.7	gi|379003696|ref|YP_005259368.1|	-	0.03	14.0	12.7	0.027	14.2	6.6	2.0	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
LXG	PF04740.7	gi|379003696|ref|YP_005259368.1|	-	0.03	14.1	7.9	0.051	13.3	5.4	1.3	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily
AAA_27	PF13514.1	gi|379003696|ref|YP_005259368.1|	-	0.032	11.9	17.8	0.042	11.5	12.3	1.1	1	0	0	1	1	1	0	AAA	domain
ADIP	PF11559.3	gi|379003696|ref|YP_005259368.1|	-	0.032	14.1	22.6	0.58	10.0	9.7	2.2	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Kinesin-relat_1	PF12711.2	gi|379003696|ref|YP_005259368.1|	-	0.034	14.5	1.5	0.034	14.5	1.0	2.2	2	0	0	2	2	2	0	Kinesin	motor
DUF948	PF06103.6	gi|379003696|ref|YP_005259368.1|	-	0.034	13.9	5.4	1.4	8.7	0.8	2.6	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
CENP-Q	PF13094.1	gi|379003696|ref|YP_005259368.1|	-	0.044	13.8	20.2	0.066	13.2	14.0	1.2	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
TBPIP	PF07106.8	gi|379003696|ref|YP_005259368.1|	-	0.045	13.3	12.9	0.15	11.5	5.2	2.2	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF2408	PF10303.4	gi|379003696|ref|YP_005259368.1|	-	0.046	13.8	8.1	2.1	8.4	0.6	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2408)
Rootletin	PF15035.1	gi|379003696|ref|YP_005259368.1|	-	0.049	13.5	18.6	0.13	12.2	12.8	1.6	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
TerB	PF05099.8	gi|379003696|ref|YP_005259368.1|	-	0.052	13.2	9.0	0.36	10.5	6.4	2.0	2	0	0	2	2	2	0	Tellurite	resistance	protein	TerB
Mnd1	PF03962.10	gi|379003696|ref|YP_005259368.1|	-	0.052	13.2	11.1	0.083	12.5	7.7	1.3	1	0	0	1	1	1	0	Mnd1	family
TPR_MLP1_2	PF07926.7	gi|379003696|ref|YP_005259368.1|	-	0.055	13.2	24.5	0.22	11.2	4.4	2.1	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
BicD	PF09730.4	gi|379003696|ref|YP_005259368.1|	-	0.059	11.7	12.7	0.058	11.7	7.2	1.6	1	1	0	1	1	1	0	Microtubule-associated	protein	Bicaudal-D
CDC37_N	PF03234.9	gi|379003696|ref|YP_005259368.1|	-	0.066	13.5	7.6	0.095	13.0	5.3	1.1	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF2125	PF09898.4	gi|379003696|ref|YP_005259368.1|	-	0.07	12.4	8.3	0.1	11.9	5.8	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2125)
Fes1	PF08609.5	gi|379003696|ref|YP_005259368.1|	-	0.07	13.6	1.9	0.15	12.5	1.3	1.6	1	1	0	1	1	1	0	Nucleotide	exchange	factor	Fes1
ATG16	PF08614.6	gi|379003696|ref|YP_005259368.1|	-	0.084	12.6	17.4	0.073	12.8	9.6	2.0	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
DNA_topoisoIV	PF00521.15	gi|379003696|ref|YP_005259368.1|	-	0.099	11.4	1.1	0.12	11.1	0.8	1.1	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
DUF342	PF03961.8	gi|379003696|ref|YP_005259368.1|	-	0.1	11.0	6.0	0.16	10.3	4.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DUF1664	PF07889.7	gi|379003696|ref|YP_005259368.1|	-	0.11	12.3	5.2	0.45	10.3	3.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
DUF2400	PF09674.5	gi|379003696|ref|YP_005259368.1|	-	0.11	12.2	4.6	3.2	7.3	0.2	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2400)
CorA	PF01544.13	gi|379003696|ref|YP_005259368.1|	-	0.11	11.5	7.5	0.17	10.8	5.2	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
BLOC1_2	PF10046.4	gi|379003696|ref|YP_005259368.1|	-	0.12	12.4	9.0	1	9.5	1.0	2.5	1	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Bap31	PF05529.7	gi|379003696|ref|YP_005259368.1|	-	0.13	11.6	9.1	0.87	9.0	6.3	2.0	1	1	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
Gp58	PF07902.6	gi|379003696|ref|YP_005259368.1|	-	0.13	10.4	7.5	0.19	9.9	5.2	1.1	1	0	0	1	1	1	0	gp58-like	protein
VIT1	PF01988.14	gi|379003696|ref|YP_005259368.1|	-	0.18	11.2	1.7	0.37	10.2	1.1	1.5	1	0	0	1	1	1	0	VIT	family
Med9	PF07544.8	gi|379003696|ref|YP_005259368.1|	-	0.19	11.5	11.9	0.76	9.5	1.4	2.2	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Sld5	PF05916.6	gi|379003696|ref|YP_005259368.1|	-	0.21	11.9	2.9	0.28	11.4	1.4	1.7	1	1	0	1	1	1	0	GINS	complex	protein
Seryl_tRNA_N	PF02403.17	gi|379003696|ref|YP_005259368.1|	-	0.22	11.5	16.4	0.11	12.5	2.4	2.3	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF3708	PF12501.3	gi|379003696|ref|YP_005259368.1|	-	0.23	11.2	8.9	0.49	10.2	5.9	1.8	1	1	1	2	2	2	0	Phosphate	ATP-binding	cassette	transporter
FlxA	PF14282.1	gi|379003696|ref|YP_005259368.1|	-	0.25	11.3	24.6	2.4	8.1	8.0	2.3	1	1	1	2	2	2	0	FlxA-like	protein
ALIX_LYPXL_bnd	PF13949.1	gi|379003696|ref|YP_005259368.1|	-	0.25	10.2	15.6	0.63	8.9	10.8	1.5	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
Fib_alpha	PF08702.5	gi|379003696|ref|YP_005259368.1|	-	0.26	11.4	8.6	0.49	10.5	5.9	1.4	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Tektin	PF03148.9	gi|379003696|ref|YP_005259368.1|	-	0.32	9.5	16.7	0.11	11.0	2.4	2.1	1	1	1	2	2	2	0	Tektin	family
THOC7	PF05615.8	gi|379003696|ref|YP_005259368.1|	-	0.36	11.1	14.9	1	9.6	10.3	1.7	1	1	0	1	1	1	0	Tho	complex	subunit	7
HrpB7	PF09486.5	gi|379003696|ref|YP_005259368.1|	-	0.38	10.6	20.5	0.46	10.4	10.5	2.2	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
DUF3583	PF12126.3	gi|379003696|ref|YP_005259368.1|	-	0.42	9.6	6.8	0.16	10.9	2.4	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3583)
DUF2353	PF09789.4	gi|379003696|ref|YP_005259368.1|	-	0.45	9.7	11.2	0.89	8.7	7.7	1.4	1	1	0	1	1	1	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Med10	PF09748.4	gi|379003696|ref|YP_005259368.1|	-	0.47	10.2	2.6	1.2	8.9	1.8	1.8	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
CENP-F_N	PF10481.4	gi|379003696|ref|YP_005259368.1|	-	0.52	9.6	13.2	0.33	10.2	7.7	1.6	1	1	0	1	1	1	0	Cenp-F	N-terminal	domain
DUF4446	PF14584.1	gi|379003696|ref|YP_005259368.1|	-	0.53	10.1	7.9	0.48	10.2	1.8	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4446)
Atg14	PF10186.4	gi|379003696|ref|YP_005259368.1|	-	0.58	9.0	17.2	0.85	8.4	11.9	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Cluap1	PF10234.4	gi|379003696|ref|YP_005259368.1|	-	0.69	9.0	13.8	0.61	9.2	2.4	1.9	1	1	1	2	2	2	0	Clusterin-associated	protein-1
MscS_porin	PF12795.2	gi|379003696|ref|YP_005259368.1|	-	0.76	9.0	31.8	5.2	6.3	22.0	1.9	1	1	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
PEP-utilisers_N	PF05524.8	gi|379003696|ref|YP_005259368.1|	-	0.8	9.5	12.9	0.36	10.6	7.0	1.8	1	1	1	2	2	2	0	PEP-utilising	enzyme,	N-terminal
DUF4200	PF13863.1	gi|379003696|ref|YP_005259368.1|	-	0.81	9.6	19.5	3.1	7.7	2.6	2.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4200)
DUF4140	PF13600.1	gi|379003696|ref|YP_005259368.1|	-	0.95	9.9	24.4	0.51	10.8	5.4	3.3	1	1	2	3	3	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
HlyD	PF00529.15	gi|379003696|ref|YP_005259368.1|	-	0.96	8.6	25.5	1.8	7.8	17.7	1.3	1	0	0	1	1	1	0	HlyD	family	secretion	protein
DUF3584	PF12128.3	gi|379003696|ref|YP_005259368.1|	-	1	6.6	22.2	3	5.0	14.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DivIC	PF04977.10	gi|379003696|ref|YP_005259368.1|	-	1.1	8.7	22.9	0.85	9.1	3.8	3.6	1	1	2	3	3	2	0	Septum	formation	initiator
Spectrin	PF00435.16	gi|379003696|ref|YP_005259368.1|	-	1.4	9.2	20.4	0.81	10.0	3.2	2.2	1	1	1	2	2	2	0	Spectrin	repeat
Nsp1_C	PF05064.8	gi|379003696|ref|YP_005259368.1|	-	1.5	8.4	11.5	0.37	10.4	3.6	2.2	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
BCAS2	PF05700.6	gi|379003696|ref|YP_005259368.1|	-	1.6	8.1	16.2	0.11	11.9	1.5	2.3	1	1	0	2	2	2	0	Breast	carcinoma	amplified	sequence	2	(BCAS2)
V_ATPase_I	PF01496.14	gi|379003696|ref|YP_005259368.1|	-	1.7	6.3	9.3	4.7	4.9	6.5	1.6	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Phage_GP20	PF06810.6	gi|379003696|ref|YP_005259368.1|	-	1.7	8.0	16.9	4.9	6.5	4.5	2.6	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
COG2	PF06148.6	gi|379003696|ref|YP_005259368.1|	-	2	8.2	9.9	6.4	6.6	1.0	2.2	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Peptidase_S46	PF10459.4	gi|379003696|ref|YP_005259368.1|	-	2.2	6.6	8.5	8.3	4.6	6.6	1.4	2	0	0	2	2	1	0	Peptidase	S46
Ax_dynein_light	PF10211.4	gi|379003696|ref|YP_005259368.1|	-	2.5	7.8	13.8	1.3	8.7	1.3	2.1	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
TMV_coat	PF00721.16	gi|379003696|ref|YP_005259368.1|	-	2.8	7.8	7.7	98	2.8	5.3	2.2	1	1	0	1	1	1	0	Virus	coat	protein	(TMV	like)
DUF3573	PF12097.3	gi|379003696|ref|YP_005259368.1|	-	3.2	6.2	6.1	1.2	7.6	0.6	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3573)
NPV_P10	PF05531.7	gi|379003696|ref|YP_005259368.1|	-	3.2	8.0	12.1	6.8	7.0	1.6	3.3	1	1	2	3	3	3	0	Nucleopolyhedrovirus	P10	protein
EMP24_GP25L	PF01105.19	gi|379003696|ref|YP_005259368.1|	-	3.4	7.3	5.1	39	3.8	3.1	2.3	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
DUF812	PF05667.6	gi|379003696|ref|YP_005259368.1|	-	3.5	6.0	13.3	5.2	5.4	9.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Mod_r	PF07200.8	gi|379003696|ref|YP_005259368.1|	-	3.6	7.5	18.1	1.8	8.4	5.8	2.1	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
XhlA	PF10779.4	gi|379003696|ref|YP_005259368.1|	-	3.6	7.5	5.2	19	5.2	3.6	2.3	1	1	0	1	1	1	0	Haemolysin	XhlA
DUF2203	PF09969.4	gi|379003696|ref|YP_005259368.1|	-	3.9	7.7	9.8	6.8	6.9	0.7	2.3	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Spc24	PF08286.6	gi|379003696|ref|YP_005259368.1|	-	3.9	7.1	15.0	0.79	9.4	2.1	2.9	1	1	1	2	2	1	0	Spc24	subunit	of	Ndc80
Kinetocho_Slk19	PF12709.2	gi|379003696|ref|YP_005259368.1|	-	4.2	7.5	13.3	6.5	6.9	0.5	3.4	1	1	2	3	3	3	0	Central	kinetochore-associated
TMF_TATA_bd	PF12325.3	gi|379003696|ref|YP_005259368.1|	-	4.3	7.0	15.4	31	4.3	8.5	2.2	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Exonuc_VII_L	PF02601.10	gi|379003696|ref|YP_005259368.1|	-	4.6	6.3	10.2	6.6	5.8	7.0	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
DUF4618	PF15397.1	gi|379003696|ref|YP_005259368.1|	-	4.8	6.4	13.4	21	4.3	9.2	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4618)
Snapin_Pallidin	PF14712.1	gi|379003696|ref|YP_005259368.1|	-	6	7.2	14.9	0.46	10.8	2.9	2.6	1	1	2	3	3	3	0	Snapin/Pallidin
FliD_C	PF07195.7	gi|379003696|ref|YP_005259368.1|	-	6.4	6.0	10.5	1.6	7.9	2.2	2.1	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Prefoldin_2	PF01920.15	gi|379003696|ref|YP_005259368.1|	-	6.7	6.5	19.1	3.3	7.5	3.4	3.6	1	1	2	3	3	2	0	Prefoldin	subunit
Prefoldin	PF02996.12	gi|379003696|ref|YP_005259368.1|	-	6.8	6.3	16.3	0.36	10.4	2.1	3.1	1	1	3	4	4	4	0	Prefoldin	subunit
Cep57_CLD_2	PF14197.1	gi|379003696|ref|YP_005259368.1|	-	8.9	6.3	20.5	30	4.6	11.7	2.6	1	1	1	2	2	2	0	Centrosome	localisation	domain	of	PPC89
NTR2	PF15458.1	gi|379003696|ref|YP_005259368.1|	-	8.9	5.4	15.8	0.093	11.9	2.2	2.4	1	1	1	2	2	2	0	Nineteen	complex-related	protein	2
Striatin	PF08232.7	gi|379003696|ref|YP_005259368.1|	-	9.2	6.5	13.6	22	5.3	9.2	1.7	1	1	1	2	2	2	0	Striatin	family
GrpE	PF01025.14	gi|379003696|ref|YP_005259368.1|	-	9.4	5.7	14.3	50	3.3	9.9	2.1	1	1	0	1	1	1	0	GrpE
DUF1673	PF07895.6	gi|379003698|ref|YP_005259370.1|	-	0.29	10.6	1.5	3.9	6.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1673)
Fe_dep_repress	PF01325.14	gi|379003699|ref|YP_005259371.1|	-	0.016	15.1	0.1	2.9	7.8	0.0	2.7	2	1	1	3	3	3	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.7	gi|379003699|ref|YP_005259371.1|	-	0.052	13.1	0.1	1.5	8.4	0.0	2.9	3	0	0	3	3	3	0	HTH	DNA	binding	domain
Ald_Xan_dh_C2	PF02738.13	gi|379003699|ref|YP_005259371.1|	-	0.14	10.4	0.1	0.39	8.9	0.0	1.6	1	1	0	2	2	2	0	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Imm16	PF15565.1	gi|379003700|ref|YP_005259372.1|	-	0.17	11.7	1.0	0.79	9.6	0.3	1.9	1	1	1	2	2	2	0	Immunity	protein	16
T2SE	PF00437.15	gi|379003701|ref|YP_005259373.1|	-	1.7e-10	40.2	0.0	2.8e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_28	PF13521.1	gi|379003701|ref|YP_005259373.1|	-	0.00072	19.5	0.0	0.0018	18.2	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379003701|ref|YP_005259373.1|	-	0.018	15.1	0.0	0.035	14.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Birna_VP2	PF01766.12	gi|379003701|ref|YP_005259373.1|	-	0.086	11.7	0.0	0.13	11.1	0.0	1.2	1	0	0	1	1	1	0	Birnavirus	VP2	protein
TrwB_AAD_bind	PF10412.4	gi|379003701|ref|YP_005259373.1|	-	0.13	10.8	0.0	0.24	9.9	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
CbiA	PF01656.18	gi|379003702|ref|YP_005259374.1|	-	9.4e-07	28.4	0.0	1.4e-06	27.8	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|379003702|ref|YP_005259374.1|	-	0.0018	18.2	0.1	0.08	12.8	0.0	2.3	1	1	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|379003702|ref|YP_005259374.1|	-	0.015	14.3	0.6	0.028	13.4	0.1	1.7	2	0	0	2	2	2	0	Anion-transporting	ATPase
AAA_17	PF13207.1	gi|379003702|ref|YP_005259374.1|	-	0.089	13.6	0.0	0.21	12.4	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
TrkA_C	PF02080.16	gi|379003706|ref|YP_005259378.1|	-	1.4e-09	37.3	0.4	5.6e-09	35.4	0.3	2.1	3	0	0	3	3	3	1	TrkA-C	domain
TrkA_N	PF02254.13	gi|379003706|ref|YP_005259378.1|	-	5e-07	29.7	0.5	5e-07	29.7	0.4	1.5	2	0	0	2	2	2	1	TrkA-N	domain
Glyco_trans_4_2	PF13477.1	gi|379003706|ref|YP_005259378.1|	-	0.00019	21.2	0.1	0.0028	17.4	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	4-like
dTMP_synthase	PF02593.9	gi|379003706|ref|YP_005259378.1|	-	0.0041	16.4	0.3	0.01	15.2	0.1	1.7	2	0	0	2	2	2	1	Thymidylate	synthase
NAD_binding_7	PF13241.1	gi|379003706|ref|YP_005259378.1|	-	0.015	15.5	0.2	0.039	14.1	0.1	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
Glyco_trans_4_4	PF13579.1	gi|379003706|ref|YP_005259378.1|	-	0.06	13.4	0.0	5.6	7.0	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
MS_channel	PF00924.13	gi|379003707|ref|YP_005259379.1|	-	3.4e-11	42.8	0.0	5.8e-11	42.1	0.0	1.4	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
Bax1-I	PF01027.15	gi|379003707|ref|YP_005259379.1|	-	0.14	11.7	10.2	0.2	11.2	7.1	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
PPDK_N	PF01326.14	gi|379003708|ref|YP_005259380.1|	-	1.5e-103	346.3	0.1	2.5e-103	345.5	0.0	1.3	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.13	gi|379003708|ref|YP_005259380.1|	-	2.5e-73	246.5	0.0	3.9e-73	245.8	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.18	gi|379003708|ref|YP_005259380.1|	-	1.8e-27	94.7	0.4	4.7e-27	93.3	0.3	1.8	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Radical_SAM	PF04055.16	gi|379003710|ref|YP_005259382.1|	-	8.1e-26	91.1	0.0	3.6e-25	89.0	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|379003710|ref|YP_005259382.1|	-	3.2e-08	33.4	0.4	1.4e-07	31.4	0.0	2.0	2	0	0	2	2	2	1	B12	binding	domain
T2SK	PF03934.8	gi|379003710|ref|YP_005259382.1|	-	0.12	11.5	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	K
Peptidase_M22	PF00814.20	gi|379003713|ref|YP_005259385.1|	-	5e-74	249.1	0.3	6e-74	248.9	0.2	1.0	1	0	0	1	1	1	1	Glycoprotease	family
Ribosomal_S27	PF01599.14	gi|379003714|ref|YP_005259386.1|	-	1.2e-07	31.4	0.6	1.6e-07	31.0	0.4	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
RNA_POL_M_15KD	PF02150.11	gi|379003714|ref|YP_005259386.1|	-	2.4e-05	23.9	0.4	5e-05	22.8	0.3	1.5	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.6	gi|379003714|ref|YP_005259386.1|	-	5.2e-05	22.8	0.3	6.2e-05	22.5	0.2	1.1	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003714|ref|YP_005259386.1|	-	6.4e-05	22.6	4.2	8.6e-05	22.2	2.9	1.2	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
DZR	PF12773.2	gi|379003714|ref|YP_005259386.1|	-	0.0014	18.3	0.6	0.002	17.8	0.4	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|379003714|ref|YP_005259386.1|	-	0.0015	17.9	4.4	0.019	14.4	0.1	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003714|ref|YP_005259386.1|	-	0.0033	16.5	4.6	0.024	13.8	0.2	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|379003714|ref|YP_005259386.1|	-	0.0037	16.9	4.7	0.013	15.1	3.2	1.8	1	1	0	1	1	1	1	Nudix	N-terminal
A2L_zn_ribbon	PF08792.5	gi|379003714|ref|YP_005259386.1|	-	0.0066	15.8	2.0	1.5	8.4	0.1	2.2	2	0	0	2	2	2	2	A2L	zinc	ribbon	domain
IBR	PF01485.16	gi|379003714|ref|YP_005259386.1|	-	0.012	15.5	0.4	0.012	15.4	0.3	1.2	1	0	0	1	1	1	0	IBR	domain
DUF2387	PF09526.5	gi|379003714|ref|YP_005259386.1|	-	0.012	15.5	1.2	0.014	15.3	0.4	1.5	2	0	0	2	2	1	0	Probable	metal-binding	protein	(DUF2387)
GFA	PF04828.9	gi|379003714|ref|YP_005259386.1|	-	0.014	15.3	3.2	0.093	12.6	0.1	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
Auto_anti-p27	PF06677.7	gi|379003714|ref|YP_005259386.1|	-	0.021	14.6	0.9	0.53	10.0	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
TF_Zn_Ribbon	PF08271.7	gi|379003714|ref|YP_005259386.1|	-	0.024	13.9	0.2	0.48	9.7	0.0	2.1	2	0	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379003714|ref|YP_005259386.1|	-	0.049	13.1	7.5	0.077	12.5	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
Baculo_ME53	PF06061.6	gi|379003714|ref|YP_005259386.1|	-	0.057	12.4	0.5	0.057	12.4	0.4	1.1	1	0	0	1	1	1	0	Baculoviridae	ME53
zf-ISL3	PF14690.1	gi|379003714|ref|YP_005259386.1|	-	0.057	13.4	7.0	0.091	12.8	0.4	2.2	1	1	2	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2082	PF09855.4	gi|379003714|ref|YP_005259386.1|	-	0.06	13.2	1.8	5.6	6.8	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
FeS	PF04060.8	gi|379003714|ref|YP_005259386.1|	-	0.089	12.3	1.8	0.22	11.1	0.1	2.2	2	0	0	2	2	2	0	Putative	Fe-S	cluster
Rpr2	PF04032.11	gi|379003714|ref|YP_005259386.1|	-	0.093	12.6	2.2	0.44	10.4	1.5	2.0	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
PhnA_Zn_Ribbon	PF08274.7	gi|379003714|ref|YP_005259386.1|	-	0.096	12.4	0.6	0.2	11.4	0.4	1.5	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
Zn-ribbon_8	PF09723.5	gi|379003714|ref|YP_005259386.1|	-	0.11	12.4	0.7	2.6	8.0	0.0	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
C1_1	PF00130.17	gi|379003714|ref|YP_005259386.1|	-	0.12	12.1	1.9	0.16	11.7	1.3	1.2	1	0	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L37ae	PF01780.14	gi|379003714|ref|YP_005259386.1|	-	0.13	12.1	0.3	0.16	11.8	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DRP	PF06044.7	gi|379003714|ref|YP_005259386.1|	-	0.16	10.9	0.4	0.19	10.7	0.3	1.1	1	0	0	1	1	1	0	Dam-replacing	family
Zn_ribbon_recom	PF13408.1	gi|379003714|ref|YP_005259386.1|	-	0.25	11.6	5.1	0.54	10.5	3.5	1.6	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
TFIIS_C	PF01096.13	gi|379003714|ref|YP_005259386.1|	-	0.42	10.2	2.8	2.9	7.6	0.2	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS91	PF14319.1	gi|379003714|ref|YP_005259386.1|	-	0.51	9.8	2.7	1.8	8.1	0.2	2.0	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
zf-H2C2_2	PF13465.1	gi|379003714|ref|YP_005259386.1|	-	0.65	10.4	3.9	7.1	7.1	0.5	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-RanBP	PF00641.13	gi|379003714|ref|YP_005259386.1|	-	1.5	8.0	4.3	2.9	7.0	0.2	2.2	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
YhfH	PF14149.1	gi|379003714|ref|YP_005259386.1|	-	1.5	8.6	5.6	21	5.0	3.6	2.2	1	1	1	2	2	2	0	YhfH-like	protein
ADK_lid	PF05191.9	gi|379003714|ref|YP_005259386.1|	-	2.9	7.6	5.4	50	3.6	3.7	2.1	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
NOB1_Zn_bind	PF08772.6	gi|379003714|ref|YP_005259386.1|	-	3.8	7.3	7.7	0.7	9.7	1.0	2.2	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF35_N	PF12172.3	gi|379003714|ref|YP_005259386.1|	-	4.6	7.2	6.0	24	5.0	0.2	2.3	1	1	1	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_S24e	PF01282.14	gi|379003715|ref|YP_005259387.1|	-	8.7e-24	83.1	0.4	1.3e-23	82.5	0.1	1.5	1	1	0	1	1	1	1	Ribosomal	protein	S24e
Pro_CA	PF00484.14	gi|379003717|ref|YP_005259389.1|	-	1.9e-26	92.8	0.2	6.4e-26	91.1	0.1	1.7	1	1	0	1	1	1	1	Carbonic	anhydrase
TK	PF00265.13	gi|379003719|ref|YP_005259391.1|	-	4.3e-05	23.1	0.0	4.5e-05	23.0	0.0	1.0	1	0	0	1	1	1	1	Thymidine	kinase
DUF1534	PF07551.6	gi|379003719|ref|YP_005259391.1|	-	0.16	11.5	1.5	1.4	8.4	0.0	2.6	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1534)
HTH_10	PF04967.7	gi|379003720|ref|YP_005259392.1|	-	1e-10	41.0	0.0	1.5e-10	40.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|379003720|ref|YP_005259392.1|	-	6.4e-05	22.1	0.2	0.00025	20.3	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
Sigma70_r4_2	PF08281.7	gi|379003720|ref|YP_005259392.1|	-	0.00045	19.6	1.0	0.013	14.9	0.1	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|379003720|ref|YP_005259392.1|	-	0.0031	17.1	0.1	0.0061	16.2	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_17	PF12728.2	gi|379003720|ref|YP_005259392.1|	-	0.083	13.1	0.0	0.21	11.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_8	PF02954.14	gi|379003720|ref|YP_005259392.1|	-	0.36	10.4	1.6	1.7	8.2	0.1	2.5	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
PsiE	PF06146.7	gi|379003721|ref|YP_005259393.1|	-	3e-13	49.8	7.2	3e-13	49.8	5.0	1.8	2	0	0	2	2	2	1	Phosphate-starvation-inducible	E
PetM	PF08041.6	gi|379003721|ref|YP_005259393.1|	-	0.044	13.2	0.9	0.044	13.2	0.6	2.2	2	0	0	2	2	2	0	PetM	family	of	cytochrome	b6f	complex	subunit	7
Ninjurin	PF04923.7	gi|379003721|ref|YP_005259393.1|	-	0.49	10.1	5.4	2.1	8.0	1.7	2.1	1	1	1	2	2	2	0	Ninjurin
Radical_SAM	PF04055.16	gi|379003722|ref|YP_005259394.1|	-	1.6e-16	60.8	0.0	1.1e-15	58.1	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|379003722|ref|YP_005259394.1|	-	0.00013	21.8	0.0	0.0014	18.5	0.0	2.5	3	0	0	3	3	3	1	B12	binding	domain
HMGL-like	PF00682.14	gi|379003722|ref|YP_005259394.1|	-	0.028	14.0	0.0	0.041	13.5	0.0	1.3	1	0	0	1	1	1	0	HMGL-like
DHDPS	PF00701.17	gi|379003722|ref|YP_005259394.1|	-	0.16	10.5	0.0	0.26	9.8	0.0	1.3	1	0	0	1	1	1	0	Dihydrodipicolinate	synthetase	family
Abi	PF02517.11	gi|379003723|ref|YP_005259395.1|	-	4.4e-09	36.3	8.7	1.9e-08	34.3	6.0	2.0	1	1	0	1	1	1	1	CAAX	protease	self-immunity
CorA	PF01544.13	gi|379003724|ref|YP_005259396.1|	-	1.3e-16	60.4	0.0	9.5e-16	57.6	0.0	1.9	1	1	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
OCD_Mu_crystall	PF02423.10	gi|379003725|ref|YP_005259397.1|	-	2.4e-34	118.5	0.1	3e-34	118.2	0.1	1.2	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|379003725|ref|YP_005259397.1|	-	7.2e-07	29.3	0.0	1.7e-06	28.2	0.0	1.6	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|379003725|ref|YP_005259397.1|	-	0.00077	19.8	0.2	0.0015	18.8	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
GFO_IDH_MocA	PF01408.17	gi|379003725|ref|YP_005259397.1|	-	0.001	19.5	0.1	0.002	18.6	0.0	1.5	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
2-Hacid_dh_C	PF02826.14	gi|379003725|ref|YP_005259397.1|	-	0.011	14.9	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
ResIII	PF04851.10	gi|379003726|ref|YP_005259398.1|	-	3.7e-28	98.6	0.0	2.1e-26	92.8	0.0	2.5	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|379003726|ref|YP_005259398.1|	-	3.1e-18	65.8	0.0	9.6e-18	64.2	0.0	1.8	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|379003726|ref|YP_005259398.1|	-	1.4e-16	60.1	0.1	2.7e-16	59.1	0.1	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|379003726|ref|YP_005259398.1|	-	7.9e-11	41.2	0.1	2.6e-09	36.2	0.0	2.3	1	1	1	2	2	2	1	SNF2	family	N-terminal	domain
AAA_19	PF13245.1	gi|379003726|ref|YP_005259398.1|	-	0.00088	18.9	0.2	0.0035	17.0	0.1	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|379003726|ref|YP_005259398.1|	-	0.00096	18.6	0.0	0.0035	16.7	0.0	1.9	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.1	gi|379003726|ref|YP_005259398.1|	-	0.0018	18.4	0.0	0.04	14.0	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|379003726|ref|YP_005259398.1|	-	0.021	14.3	0.1	0.045	13.3	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
FtsQ	PF03799.10	gi|379003726|ref|YP_005259398.1|	-	0.039	14.1	0.0	1.9	8.6	0.0	2.6	2	0	0	2	2	2	0	Cell	division	protein	FtsQ
T2SE	PF00437.15	gi|379003726|ref|YP_005259398.1|	-	0.054	12.3	0.0	0.11	11.3	0.0	1.5	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
PhoH	PF02562.11	gi|379003726|ref|YP_005259398.1|	-	0.072	12.3	0.0	0.16	11.2	0.0	1.5	1	0	0	1	1	1	0	PhoH-like	protein
DUF790	PF05626.6	gi|379003727|ref|YP_005259399.1|	-	8.8e-106	353.6	0.3	9.8e-106	353.4	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
HTH_38	PF13936.1	gi|379003727|ref|YP_005259399.1|	-	0.085	12.4	0.0	0.24	10.9	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain
Radical_SAM	PF04055.16	gi|379003728|ref|YP_005259400.1|	-	3.5e-18	66.3	0.0	6.9e-18	65.3	0.0	1.4	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379003728|ref|YP_005259400.1|	-	3.8e-08	33.5	0.1	6.4e-08	32.8	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|379003728|ref|YP_005259400.1|	-	1.4e-05	25.1	0.2	2.3e-05	24.4	0.1	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_7	PF12838.2	gi|379003729|ref|YP_005259401.1|	-	3.1e-10	40.2	9.6	6.4e-10	39.2	6.6	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379003729|ref|YP_005259401.1|	-	3.8e-10	39.4	9.1	4.9e-10	39.1	6.3	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003729|ref|YP_005259401.1|	-	1.3e-09	37.2	16.8	4.8e-09	35.4	1.9	2.4	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379003729|ref|YP_005259401.1|	-	1.9e-09	36.8	9.1	4.3e-08	32.6	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379003729|ref|YP_005259401.1|	-	5.6e-09	35.4	14.6	1.8e-08	33.8	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379003729|ref|YP_005259401.1|	-	5.7e-09	36.4	10.1	2.2e-08	34.5	7.0	1.9	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.1	gi|379003729|ref|YP_005259401.1|	-	1.2e-08	34.6	7.4	1.2e-08	34.6	5.1	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379003729|ref|YP_005259401.1|	-	3.3e-08	34.1	8.3	0.00014	22.4	1.8	2.1	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|379003729|ref|YP_005259401.1|	-	1.3e-07	31.7	10.0	2.6e-07	30.8	6.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|379003729|ref|YP_005259401.1|	-	4.2e-06	26.5	5.1	3.8e-05	23.5	3.4	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003729|ref|YP_005259401.1|	-	6.2e-06	26.1	13.6	0.00012	22.1	3.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|379003729|ref|YP_005259401.1|	-	5.1e-05	23.6	3.3	0.0061	16.9	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379003729|ref|YP_005259401.1|	-	0.00018	21.8	18.2	0.0088	16.5	4.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379003729|ref|YP_005259401.1|	-	0.0002	21.3	9.3	0.00071	19.5	6.6	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379003729|ref|YP_005259401.1|	-	0.00061	20.1	13.6	0.01	16.1	8.9	2.4	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|379003729|ref|YP_005259401.1|	-	0.0014	18.9	14.3	0.013	15.8	1.9	2.3	1	1	3	4	4	4	2	4Fe-4S	dicluster	domain
HTH_10	PF04967.7	gi|379003730|ref|YP_005259402.1|	-	5.1e-18	64.4	0.0	8e-18	63.7	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|379003730|ref|YP_005259402.1|	-	2.2e-05	23.6	0.1	4e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AraC	PF00165.18	gi|379003730|ref|YP_005259402.1|	-	3.3e-05	23.5	0.0	0.0075	16.0	0.0	2.6	1	1	1	2	2	2	2	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_AsnC-type	PF13404.1	gi|379003730|ref|YP_005259402.1|	-	0.00023	20.6	0.4	0.00023	20.6	0.3	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|379003730|ref|YP_005259402.1|	-	0.00059	19.2	0.1	0.0015	17.9	0.1	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_24	PF13412.1	gi|379003730|ref|YP_005259402.1|	-	0.0019	17.5	0.2	0.013	14.9	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|379003730|ref|YP_005259402.1|	-	0.0079	15.8	1.1	0.041	13.5	0.8	2.0	1	1	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|379003730|ref|YP_005259402.1|	-	0.0089	15.7	0.0	0.11	12.2	0.0	2.3	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
HTH_27	PF13463.1	gi|379003730|ref|YP_005259402.1|	-	0.0096	16.2	0.0	0.2	12.0	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|379003730|ref|YP_005259402.1|	-	0.011	14.9	0.1	0.041	13.0	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Glyco_trans_4_4	PF13579.1	gi|379003730|ref|YP_005259402.1|	-	0.013	15.6	0.1	0.017	15.3	0.1	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
MarR	PF01047.17	gi|379003730|ref|YP_005259402.1|	-	0.036	13.7	0.1	0.31	10.7	0.0	2.4	2	1	0	2	2	2	0	MarR	family
HTH_3	PF01381.17	gi|379003730|ref|YP_005259402.1|	-	0.046	13.5	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix
Dimerisation	PF08100.6	gi|379003730|ref|YP_005259402.1|	-	0.088	12.6	0.1	0.38	10.6	0.1	2.0	3	0	0	3	3	3	0	Dimerisation	domain
HTH_23	PF13384.1	gi|379003730|ref|YP_005259402.1|	-	0.1	12.3	0.1	0.44	10.2	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
SHOCT	PF09851.4	gi|379003730|ref|YP_005259402.1|	-	1.9	8.0	4.1	1.6	8.3	0.1	2.5	3	0	0	3	3	3	0	Short	C-terminal	domain
TK	PF00265.13	gi|379003731|ref|YP_005259403.1|	-	4.9e-48	163.0	0.0	5.5e-48	162.8	0.0	1.0	1	0	0	1	1	1	1	Thymidine	kinase
AAA_14	PF13173.1	gi|379003731|ref|YP_005259403.1|	-	0.002	18.0	0.0	0.0036	17.2	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379003731|ref|YP_005259403.1|	-	0.068	12.5	0.0	0.068	12.5	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
Scytalone_dh	PF02982.9	gi|379003731|ref|YP_005259403.1|	-	0.073	12.6	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Scytalone	dehydratase
DUF401	PF04165.7	gi|379003732|ref|YP_005259404.1|	-	1.7e-58	198.5	27.5	2.1e-58	198.2	19.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF401)
Ribosomal_S30	PF04758.9	gi|379003733|ref|YP_005259405.1|	-	4.5e-11	42.3	1.2	5.7e-11	41.9	0.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S30
M-factor	PF03855.8	gi|379003733|ref|YP_005259405.1|	-	0.74	9.8	3.2	4	7.4	0.2	2.5	1	1	1	2	2	2	0	M-factor
UPF0066	PF01980.11	gi|379003734|ref|YP_005259406.1|	-	1.2e-38	131.7	0.0	1.5e-38	131.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
CitMHS	PF03600.11	gi|379003735|ref|YP_005259407.1|	-	3.8e-24	84.9	36.7	1.2e-23	83.2	21.3	2.1	1	1	1	2	2	2	2	Citrate	transporter
Na_sulph_symp	PF00939.14	gi|379003735|ref|YP_005259407.1|	-	1.2e-05	24.3	26.2	0.0097	14.8	5.6	3.2	1	1	2	3	3	3	3	Sodium:sulfate	symporter	transmembrane	region
Trp_syntA	PF00290.15	gi|379003736|ref|YP_005259408.1|	-	8.9e-21	73.5	0.0	1.4e-18	66.3	0.0	2.0	1	1	0	1	1	1	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|379003736|ref|YP_005259408.1|	-	0.00034	19.9	0.0	0.00045	19.5	0.0	1.2	1	0	0	1	1	1	1	PcrB	family
NanE	PF04131.9	gi|379003736|ref|YP_005259408.1|	-	0.00049	19.1	0.0	0.00068	18.6	0.0	1.2	1	0	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
IGPS	PF00218.16	gi|379003736|ref|YP_005259408.1|	-	0.00059	18.9	0.0	0.00092	18.3	0.0	1.3	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
IMPDH	PF00478.20	gi|379003736|ref|YP_005259408.1|	-	0.0041	16.0	0.0	0.0057	15.5	0.0	1.1	1	0	0	1	1	1	1	IMP	dehydrogenase	/	GMP	reductase	domain
ThiG	PF05690.9	gi|379003736|ref|YP_005259408.1|	-	0.0078	15.3	0.1	0.01	14.9	0.1	1.1	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
GATase	PF00117.23	gi|379003737|ref|YP_005259409.1|	-	1.8e-51	174.3	0.0	2e-51	174.1	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|379003737|ref|YP_005259409.1|	-	6.1e-14	51.9	0.2	7.3e-13	48.4	0.1	2.2	1	1	0	1	1	1	1	Peptidase	C26
Chorismate_bind	PF00425.13	gi|379003738|ref|YP_005259410.1|	-	1.7e-92	309.3	0.0	2e-92	309.1	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|379003738|ref|YP_005259410.1|	-	0.00034	20.6	0.1	0.0014	18.6	0.0	2.1	2	0	0	2	2	2	1	Anthranilate	synthase	component	I,	N	terminal	region
Glycos_transf_3	PF00591.16	gi|379003739|ref|YP_005259411.1|	-	3.1e-78	262.6	0.4	3.9e-78	262.3	0.3	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|379003739|ref|YP_005259411.1|	-	7.8e-20	70.2	0.5	1.9e-19	69.0	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family,	helical	bundle	domain
PALP	PF00291.20	gi|379003740|ref|YP_005259412.1|	-	2e-43	148.8	0.1	2.6e-43	148.3	0.1	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Ferritin	PF00210.19	gi|379003741|ref|YP_005259413.1|	-	9.4e-38	129.1	1.3	1.4e-37	128.6	0.9	1.2	1	0	0	1	1	1	1	Ferritin-like	domain
CoA_transf_3	PF02515.12	gi|379003741|ref|YP_005259413.1|	-	1.9e-26	92.4	0.6	2.9e-26	91.8	0.4	1.3	1	0	0	1	1	1	1	CoA-transferase	family	III
Rubrerythrin	PF02915.12	gi|379003741|ref|YP_005259413.1|	-	0.0042	17.4	0.7	0.0078	16.5	0.5	1.4	1	0	0	1	1	1	1	Rubrerythrin
CARD	PF00619.16	gi|379003741|ref|YP_005259413.1|	-	0.013	15.3	0.1	0.037	13.8	0.0	1.8	1	0	0	1	1	1	0	Caspase	recruitment	domain
Sec5	PF15469.1	gi|379003742|ref|YP_005259414.1|	-	0.00055	19.7	9.2	0.015	15.0	1.2	2.8	1	1	2	3	3	3	2	Exocyst	complex	component	Sec5
MHCassoc_trimer	PF08831.5	gi|379003742|ref|YP_005259414.1|	-	0.1	12.4	0.1	7.1	6.5	0.0	2.7	2	0	0	2	2	2	0	Class	II	MHC-associated	invariant	chain	trimerisation	domain
Prominin	PF05478.6	gi|379003742|ref|YP_005259414.1|	-	0.11	10.0	6.0	0.13	9.8	3.8	1.4	1	1	0	1	1	1	0	Prominin
Spectrin	PF00435.16	gi|379003742|ref|YP_005259414.1|	-	0.21	11.8	5.0	3.1	8.1	1.4	2.7	2	1	0	2	2	2	0	Spectrin	repeat
MutS_III	PF05192.13	gi|379003742|ref|YP_005259414.1|	-	0.22	11.2	7.6	0.77	9.5	5.2	1.9	1	1	0	1	1	1	0	MutS	domain	III
YjcZ	PF13990.1	gi|379003742|ref|YP_005259414.1|	-	2.1	7.3	10.3	3.9	6.5	0.4	2.2	1	1	1	2	2	2	0	YjcZ-like	protein
PRAI	PF00697.17	gi|379003743|ref|YP_005259415.1|	-	1.6e-23	83.2	0.0	1.9e-23	83.0	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
TroA	PF01297.12	gi|379003743|ref|YP_005259415.1|	-	0.073	12.3	0.0	0.13	11.4	0.0	1.4	1	0	0	1	1	1	0	Periplasmic	solute	binding	protein	family
AAA_14	PF13173.1	gi|379003744|ref|YP_005259416.1|	-	1.4e-17	63.8	0.0	2.3e-17	63.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.1	gi|379003744|ref|YP_005259416.1|	-	2.5e-09	37.1	0.0	4.2e-09	36.4	0.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
Arch_ATPase	PF01637.13	gi|379003744|ref|YP_005259416.1|	-	0.00024	20.9	0.1	0.078	12.6	0.0	3.1	2	1	1	3	3	3	1	Archaeal	ATPase
HTH_Tnp_ISL3	PF13542.1	gi|379003744|ref|YP_005259416.1|	-	0.024	13.8	0.0	0.055	12.6	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_23	PF13384.1	gi|379003744|ref|YP_005259416.1|	-	0.026	14.1	0.0	0.079	12.6	0.0	1.8	1	0	0	1	1	1	0	Homeodomain-like	domain
AAA_16	PF13191.1	gi|379003744|ref|YP_005259416.1|	-	0.029	14.3	0.1	0.13	12.2	0.0	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
HTH_AsnC-type	PF13404.1	gi|379003744|ref|YP_005259416.1|	-	0.051	13.1	0.0	0.11	12.0	0.0	1.6	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379003744|ref|YP_005259416.1|	-	0.077	12.3	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
PaREP1	PF05942.6	gi|379003746|ref|YP_005259418.1|	-	0.0003	20.6	0.0	0.0003	20.6	0.0	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
PaREP1	PF05942.6	gi|379003747|ref|YP_005259419.1|	-	7.8e-13	48.3	5.8	8.6e-13	48.1	4.0	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
SoxE	PF06525.6	gi|379003748|ref|YP_005259420.1|	-	0.058	12.6	2.8	0.098	11.9	2.0	1.4	1	1	0	1	1	1	0	Sulfocyanin	(SoxE)
Peptidase_S24	PF00717.18	gi|379003749|ref|YP_005259421.1|	-	4.2e-08	32.7	1.1	6.2e-08	32.1	0.2	1.7	2	0	0	2	2	2	1	Peptidase	S24-like
NPCBM_assoc	PF10633.4	gi|379003752|ref|YP_005259424.1|	-	0.0025	17.8	0.6	0.0077	16.2	0.0	2.2	2	2	1	3	3	3	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|379003752|ref|YP_005259424.1|	-	0.0047	16.9	0.3	0.01	15.8	0.0	1.7	2	0	0	2	2	2	1	CARDB
Cadherin-like	PF12733.2	gi|379003752|ref|YP_005259424.1|	-	0.23	11.7	3.6	1.6	9.1	0.1	2.4	1	1	1	2	2	2	0	Cadherin-like	beta	sandwich	domain
RHIM	PF12721.2	gi|379003752|ref|YP_005259424.1|	-	0.88	10.0	5.0	1.6	9.2	1.8	2.2	2	0	0	2	2	2	0	RIP	homotypic	interaction	motif
HTH_24	PF13412.1	gi|379003753|ref|YP_005259425.1|	-	2.3e-07	30.0	0.1	3.1e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|379003753|ref|YP_005259425.1|	-	3.7e-07	29.8	0.0	4.7e-07	29.5	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|379003753|ref|YP_005259425.1|	-	4.4e-06	26.3	0.0	6.2e-06	25.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|379003753|ref|YP_005259425.1|	-	1.5e-05	24.5	0.0	2.4e-05	23.8	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|379003753|ref|YP_005259425.1|	-	2.2e-05	24.0	0.0	3.2e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|379003753|ref|YP_005259425.1|	-	3.1e-05	23.6	0.2	4e-05	23.2	0.1	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|379003753|ref|YP_005259425.1|	-	0.00045	19.7	0.0	0.00075	19.0	0.0	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_28	PF13518.1	gi|379003753|ref|YP_005259425.1|	-	0.00056	19.8	1.0	0.0046	16.9	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
B-block_TFIIIC	PF04182.7	gi|379003753|ref|YP_005259425.1|	-	0.0011	18.7	0.3	0.0075	16.0	0.0	2.0	2	0	0	2	2	2	1	B-block	binding	subunit	of	TFIIIC
TetR_N	PF00440.18	gi|379003753|ref|YP_005259425.1|	-	0.0013	18.2	0.0	0.002	17.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
Rrf2	PF02082.15	gi|379003753|ref|YP_005259425.1|	-	0.0014	18.6	0.0	0.0019	18.2	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
RPA_C	PF08784.6	gi|379003753|ref|YP_005259425.1|	-	0.0034	17.7	0.0	0.0039	17.5	0.0	1.1	1	0	0	1	1	1	1	Replication	protein	A	C	terminal
HTH_Tnp_1	PF01527.15	gi|379003753|ref|YP_005259425.1|	-	0.0036	17.2	0.3	0.0072	16.2	0.0	1.7	1	1	0	2	2	2	1	Transposase
HTH_5	PF01022.15	gi|379003753|ref|YP_005259425.1|	-	0.0048	16.5	0.0	0.0078	15.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_38	PF13936.1	gi|379003753|ref|YP_005259425.1|	-	0.0065	15.9	0.1	0.012	15.1	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|379003753|ref|YP_005259425.1|	-	0.0075	16.1	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_27	PF13463.1	gi|379003753|ref|YP_005259425.1|	-	0.0095	16.2	0.1	0.013	15.8	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_29	PF13551.1	gi|379003753|ref|YP_005259425.1|	-	0.01	15.9	0.1	0.012	15.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
LexA_DNA_bind	PF01726.11	gi|379003753|ref|YP_005259425.1|	-	0.013	15.0	0.0	0.018	14.5	0.0	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_23	PF13384.1	gi|379003753|ref|YP_005259425.1|	-	0.014	15.0	1.5	0.016	14.8	0.1	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
Mga	PF05043.8	gi|379003753|ref|YP_005259425.1|	-	0.017	15.3	0.1	0.025	14.8	0.0	1.3	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
HTH_3	PF01381.17	gi|379003753|ref|YP_005259425.1|	-	0.018	14.8	0.0	0.037	13.8	0.0	1.6	1	1	0	1	1	1	0	Helix-turn-helix
FeoC	PF09012.5	gi|379003753|ref|YP_005259425.1|	-	0.039	13.6	0.0	0.06	13.0	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
GntR	PF00392.16	gi|379003753|ref|YP_005259425.1|	-	0.058	12.8	0.0	0.081	12.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HemN_C	PF06969.11	gi|379003753|ref|YP_005259425.1|	-	0.069	13.2	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	HemN	C-terminal	domain
Sulfolobus_pRN	PF05584.6	gi|379003753|ref|YP_005259425.1|	-	0.1	12.5	0.1	0.15	12.0	0.1	1.3	1	1	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_17	PF12728.2	gi|379003753|ref|YP_005259425.1|	-	0.13	12.5	0.5	0.23	11.7	0.3	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_9	PF08221.6	gi|379003753|ref|YP_005259425.1|	-	0.14	11.9	0.0	0.19	11.6	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
DUF329	PF03884.9	gi|379003754|ref|YP_005259426.1|	-	0.00029	20.3	0.8	0.00036	20.0	0.6	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF329)
Cys_rich_CPXG	PF14255.1	gi|379003754|ref|YP_005259426.1|	-	0.00034	20.3	0.3	0.36	10.6	0.0	2.2	2	0	0	2	2	2	2	Cysteine-rich	CPXCG
zinc_ribbon_5	PF13719.1	gi|379003754|ref|YP_005259426.1|	-	0.00057	19.4	1.3	0.011	15.2	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003754|ref|YP_005259426.1|	-	0.0011	18.6	1.1	0.022	14.4	0.1	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|379003754|ref|YP_005259426.1|	-	0.0012	18.5	0.2	0.0016	18.2	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379003754|ref|YP_005259426.1|	-	0.0014	17.7	4.9	0.0061	15.7	3.9	1.6	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|379003754|ref|YP_005259426.1|	-	0.0017	18.1	0.4	0.002	17.8	0.3	1.1	1	0	0	1	1	1	1	zinc-ribbons
TF_Zn_Ribbon	PF08271.7	gi|379003754|ref|YP_005259426.1|	-	0.0017	17.6	5.0	0.059	12.6	4.4	2.0	1	1	1	2	2	2	1	TFIIB	zinc-binding
HypA	PF01155.14	gi|379003754|ref|YP_005259426.1|	-	0.0023	17.5	0.1	0.0026	17.4	0.1	1.2	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|379003754|ref|YP_005259426.1|	-	0.0028	17.3	0.5	0.0038	16.9	0.3	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
zf-C2HC_2	PF13913.1	gi|379003754|ref|YP_005259426.1|	-	0.004	16.7	4.8	0.08	12.6	0.2	2.1	2	0	0	2	2	2	1	zinc-finger	of	a	C2HC-type
zf-H2C2_2	PF13465.1	gi|379003754|ref|YP_005259426.1|	-	0.0046	17.1	3.1	0.21	11.9	0.1	2.2	2	0	0	2	2	2	1	Zinc-finger	double	domain
Zn-ribbon_8	PF09723.5	gi|379003754|ref|YP_005259426.1|	-	0.0091	15.9	5.6	0.18	11.7	4.0	2.1	1	1	1	2	2	2	1	Zinc	ribbon	domain
CpXC	PF14353.1	gi|379003754|ref|YP_005259426.1|	-	0.0096	15.8	0.8	0.39	10.6	0.1	2.0	1	1	1	2	2	2	1	CpXC	protein
Lar_restr_allev	PF14354.1	gi|379003754|ref|YP_005259426.1|	-	0.011	15.9	1.7	1.1	9.6	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-ISL3	PF14690.1	gi|379003754|ref|YP_005259426.1|	-	0.014	15.4	0.4	0.4	10.7	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNHCP	PF12647.2	gi|379003754|ref|YP_005259426.1|	-	0.039	13.7	0.1	0.042	13.6	0.1	1.2	1	0	0	1	1	1	0	RNHCP	domain
Cys_rich_CPCC	PF14206.1	gi|379003754|ref|YP_005259426.1|	-	0.05	13.1	0.4	0.052	13.1	0.3	1.2	1	0	0	1	1	1	0	Cysteine-rich	CPCC
Cys_rich_KTR	PF14205.1	gi|379003754|ref|YP_005259426.1|	-	0.051	13.0	4.5	2.1	7.8	3.1	2.2	1	1	0	1	1	1	0	Cysteine-rich	KTR
zf-C2HC5	PF06221.8	gi|379003754|ref|YP_005259426.1|	-	0.054	13.2	0.2	0.061	13.0	0.1	1.2	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
FANCL_C	PF11793.3	gi|379003754|ref|YP_005259426.1|	-	0.058	13.3	2.3	1.5	8.8	0.1	2.1	1	1	1	2	2	2	0	FANCL	C-terminal	domain
zf-C3HC4_3	PF13920.1	gi|379003754|ref|YP_005259426.1|	-	0.059	13.0	0.8	0.083	12.5	0.6	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-C2H2_4	PF13894.1	gi|379003754|ref|YP_005259426.1|	-	0.062	13.6	1.0	2.1	8.8	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
DUF2614	PF11023.3	gi|379003754|ref|YP_005259426.1|	-	0.07	12.9	0.2	0.07	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2614)
zf-LITAF-like	PF10601.4	gi|379003754|ref|YP_005259426.1|	-	0.083	12.7	1.2	2.5	8.0	0.1	2.1	1	1	1	2	2	2	0	LITAF-like	zinc	ribbon	domain
Prok-RING_4	PF14447.1	gi|379003754|ref|YP_005259426.1|	-	0.092	12.3	2.3	4.8	6.8	0.0	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	4
FYDLN_acid	PF09538.5	gi|379003754|ref|YP_005259426.1|	-	0.097	13.2	0.3	0.1	13.1	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
OrfB_Zn_ribbon	PF07282.6	gi|379003754|ref|YP_005259426.1|	-	0.1	12.2	0.2	0.13	11.8	0.1	1.2	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Sgf11	PF08209.6	gi|379003754|ref|YP_005259426.1|	-	0.1	11.9	1.2	0.4	10.0	0.1	2.0	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
zf-C2H2	PF00096.21	gi|379003754|ref|YP_005259426.1|	-	0.11	12.8	2.9	0.23	11.8	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn_Tnp_IS1	PF03811.8	gi|379003754|ref|YP_005259426.1|	-	0.12	11.8	0.8	11	5.6	0.1	2.2	2	0	0	2	2	2	0	InsA	N-terminal	domain
Ogr_Delta	PF04606.7	gi|379003754|ref|YP_005259426.1|	-	0.14	11.8	1.0	1.4	8.6	0.1	2.1	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-RING_3	PF14369.1	gi|379003754|ref|YP_005259426.1|	-	0.17	11.9	4.6	0.49	10.4	0.2	2.2	1	1	1	2	2	2	0	zinc-finger
zf-Di19	PF05605.7	gi|379003754|ref|YP_005259426.1|	-	0.24	11.5	4.1	2.5	8.3	0.2	2.1	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379003754|ref|YP_005259426.1|	-	0.32	10.5	8.3	0.91	9.0	5.7	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|379003754|ref|YP_005259426.1|	-	0.73	9.4	4.8	13	5.4	3.4	2.1	1	1	0	1	1	1	0	Sec23/Sec24	zinc	finger
UPF0547	PF10571.4	gi|379003754|ref|YP_005259426.1|	-	2.2	8.0	8.2	33	4.2	5.7	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DUF86	PF01934.12	gi|379003757|ref|YP_005259429.1|	-	5.9e-15	54.9	0.0	1.2e-14	53.9	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF86
Radical_SAM	PF04055.16	gi|379003758|ref|YP_005259430.1|	-	2.8e-13	50.3	0.0	4.5e-13	49.7	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
DUF4143	PF13635.1	gi|379003759|ref|YP_005259431.1|	-	0.0052	16.9	0.7	0.0078	16.3	0.5	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
NERD	PF08378.6	gi|379003759|ref|YP_005259431.1|	-	0.013	15.7	0.2	0.013	15.7	0.1	2.2	1	1	0	2	2	2	0	Nuclease-related	domain
DDRGK	PF09756.4	gi|379003759|ref|YP_005259431.1|	-	0.076	12.4	3.4	0.11	11.8	2.3	1.2	1	0	0	1	1	1	0	DDRGK	domain
FadA	PF09403.5	gi|379003759|ref|YP_005259431.1|	-	0.18	11.8	3.2	0.28	11.2	2.2	1.4	1	0	0	1	1	1	0	Adhesion	protein	FadA
DUF713	PF05218.9	gi|379003759|ref|YP_005259431.1|	-	9.8	5.8	11.1	83	2.8	7.7	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF713)
VKOR	PF07884.9	gi|379003761|ref|YP_005259433.1|	-	6.6e-27	94.0	12.8	7.5e-27	93.8	8.9	1.0	1	0	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
DUF3593	PF12159.3	gi|379003761|ref|YP_005259433.1|	-	8.4	6.2	7.6	1.3	8.8	1.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3593)
Aminotran_1_2	PF00155.16	gi|379003762|ref|YP_005259434.1|	-	2.1e-43	148.6	0.0	2.5e-43	148.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.14	gi|379003762|ref|YP_005259434.1|	-	8.5e-07	28.0	0.0	1.2e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|379003762|ref|YP_005259434.1|	-	1e-05	23.9	0.0	1.5e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Alliinase_C	PF04864.8	gi|379003762|ref|YP_005259434.1|	-	0.012	14.2	0.0	0.023	13.3	0.0	1.4	2	0	0	2	2	2	0	Allinase
Aminotran_3	PF00202.16	gi|379003763|ref|YP_005259435.1|	-	7.7e-91	304.4	0.0	9.4e-91	304.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_5	PF00266.14	gi|379003763|ref|YP_005259435.1|	-	0.0018	17.0	0.0	0.0028	16.4	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
Zot	PF05707.7	gi|379003763|ref|YP_005259435.1|	-	0.13	11.7	0.0	0.29	10.5	0.0	1.5	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
DUF504	PF04457.7	gi|379003764|ref|YP_005259436.1|	-	3.4e-16	59.1	0.4	4e-16	58.8	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF504)
bPH_6	PF10756.4	gi|379003764|ref|YP_005259436.1|	-	0.06	13.2	0.6	0.06	13.2	0.4	1.5	2	0	0	2	2	2	0	Bacterial	PH	domain
Pilus_PilP	PF11356.3	gi|379003764|ref|YP_005259436.1|	-	0.21	11.8	1.3	0.36	11.0	0.9	1.4	1	0	0	1	1	1	0	Type	IV	pilus	biogenesis
Carb_kinase	PF01256.12	gi|379003765|ref|YP_005259437.1|	-	7e-55	185.9	0.8	1e-54	185.3	0.6	1.3	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.10	gi|379003765|ref|YP_005259437.1|	-	5.6e-45	152.9	0.7	1.2e-44	151.8	0.2	1.8	2	0	0	2	2	2	1	YjeF-related	protein	N-terminus
HK	PF02110.10	gi|379003765|ref|YP_005259437.1|	-	4.3e-13	49.0	0.1	7.3e-13	48.2	0.1	1.3	1	0	0	1	1	1	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|379003765|ref|YP_005259437.1|	-	0.00034	19.8	0.0	0.0006	19.0	0.0	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
SWIM	PF04434.12	gi|379003767|ref|YP_005259439.1|	-	0.0042	16.5	1.1	0.0086	15.5	0.7	1.5	1	0	0	1	1	1	1	SWIM	zinc	finger
EthD	PF07110.6	gi|379003768|ref|YP_005259440.1|	-	0.04	14.8	0.0	0.064	14.1	0.0	1.3	1	0	0	1	1	1	0	EthD	domain
Oxidored_q2	PF00420.19	gi|379003770|ref|YP_005259442.1|	-	0.0028	17.2	1.2	0.0028	17.2	0.9	2.4	2	1	0	2	2	2	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF973	PF06157.6	gi|379003770|ref|YP_005259442.1|	-	0.0038	16.2	2.3	0.005	15.8	1.6	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
GPI2	PF06432.6	gi|379003770|ref|YP_005259442.1|	-	9.4	5.4	11.2	0.89	8.8	1.8	2.2	1	1	1	2	2	2	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
Rad51	PF08423.6	gi|379003771|ref|YP_005259443.1|	-	4.6e-42	143.6	0.0	5.8e-42	143.3	0.0	1.2	1	0	0	1	1	1	1	Rad51
KaiC	PF06745.8	gi|379003771|ref|YP_005259443.1|	-	2.1e-11	43.3	0.0	3.6e-11	42.6	0.0	1.4	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379003771|ref|YP_005259443.1|	-	4.4e-11	42.5	0.0	7.1e-11	41.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
HHH_5	PF14520.1	gi|379003771|ref|YP_005259443.1|	-	3.1e-09	36.8	0.3	1.2e-08	34.9	0.1	2.1	1	1	1	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|379003771|ref|YP_005259443.1|	-	0.00017	21.0	0.1	0.011	15.4	0.0	2.8	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
RecA	PF00154.16	gi|379003771|ref|YP_005259443.1|	-	0.00022	20.4	0.0	0.00027	20.1	0.0	1.1	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
Cdd1	PF11731.3	gi|379003771|ref|YP_005259443.1|	-	0.0024	17.7	0.0	0.0048	16.8	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
AAA_10	PF12846.2	gi|379003771|ref|YP_005259443.1|	-	0.0024	17.3	0.0	0.0049	16.3	0.0	1.5	1	1	0	1	1	1	1	AAA-like	domain
DUF4332	PF14229.1	gi|379003771|ref|YP_005259443.1|	-	0.018	15.0	0.1	0.21	11.5	0.0	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4332)
Bac_DnaA	PF00308.13	gi|379003771|ref|YP_005259443.1|	-	0.043	13.4	0.0	0.089	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
PhoH	PF02562.11	gi|379003771|ref|YP_005259443.1|	-	0.049	12.8	0.0	0.092	11.9	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
IstB_IS21	PF01695.12	gi|379003771|ref|YP_005259443.1|	-	0.074	12.4	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Zot	PF05707.7	gi|379003771|ref|YP_005259443.1|	-	0.091	12.2	0.1	0.21	11.0	0.0	1.6	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
CmcI	PF04989.7	gi|379003771|ref|YP_005259443.1|	-	0.14	11.4	0.0	0.19	11.0	0.0	1.3	1	0	0	1	1	1	0	Cephalosporin	hydroxylase
Antimicrobial15	PF08110.7	gi|379003771|ref|YP_005259443.1|	-	0.3	11.1	1.5	22	5.3	0.1	2.7	2	0	0	2	2	2	0	Ocellatin	family
CLP_protease	PF00574.18	gi|379003772|ref|YP_005259444.1|	-	0.016	14.9	0.7	0.055	13.1	0.5	1.7	1	1	0	1	1	1	0	Clp	protease
Beta_propel	PF09826.4	gi|379003773|ref|YP_005259445.1|	-	5.2e-145	483.7	0.0	6.9e-145	483.3	0.0	1.1	1	0	0	1	1	1	1	Beta	propeller	domain
LVIVD	PF08309.6	gi|379003773|ref|YP_005259445.1|	-	0.015	14.2	0.0	3.3	6.7	0.0	3.1	3	0	0	3	3	3	0	LVIVD	repeat
DUF2316	PF10078.4	gi|379003774|ref|YP_005259446.1|	-	0.017	15.1	0.0	0.025	14.5	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
CbiQ	PF02361.11	gi|379003775|ref|YP_005259447.1|	-	0.74	9.3	8.5	0.23	11.0	4.1	1.4	2	0	0	2	2	2	0	Cobalt	transport	protein
Penicil_amidase	PF01804.13	gi|379003776|ref|YP_005259448.1|	-	7.9e-128	428.5	0.2	7.6e-127	425.3	0.1	2.0	1	1	0	1	1	1	1	Penicillin	amidase
SF3a60_bindingd	PF12108.3	gi|379003778|ref|YP_005259450.1|	-	0.061	12.8	0.1	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	Splicing	factor	SF3a60	binding	domain
Zn-ribbon_8	PF09723.5	gi|379003780|ref|YP_005259452.1|	-	0.00064	19.6	3.1	0.001	18.9	2.1	1.3	1	0	0	1	1	1	1	Zinc	ribbon	domain
HypA	PF01155.14	gi|379003780|ref|YP_005259452.1|	-	0.0016	18.1	1.2	0.0021	17.7	0.9	1.3	1	1	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
PhnA_Zn_Ribbon	PF08274.7	gi|379003780|ref|YP_005259452.1|	-	0.03	14.1	1.7	4.9	7.0	0.5	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
zinc_ribbon_2	PF13240.1	gi|379003780|ref|YP_005259452.1|	-	0.031	13.7	3.1	0.076	12.5	2.1	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|379003780|ref|YP_005259452.1|	-	0.032	13.8	1.7	2.2	8.0	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
TF_Zn_Ribbon	PF08271.7	gi|379003780|ref|YP_005259452.1|	-	0.037	13.3	2.6	4.2	6.7	0.3	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
HTH_11	PF08279.7	gi|379003780|ref|YP_005259452.1|	-	0.058	13.0	0.1	2.6	7.7	0.1	2.2	2	0	0	2	2	2	0	HTH	domain
DZR	PF12773.2	gi|379003780|ref|YP_005259452.1|	-	0.086	12.6	3.3	0.17	11.7	2.3	1.4	1	1	0	1	1	1	0	Double	zinc	ribbon
SprT-like	PF10263.4	gi|379003780|ref|YP_005259452.1|	-	0.096	12.3	0.1	0.1	12.2	0.1	1.2	1	0	0	1	1	1	0	SprT-like	family
zf-ribbon_3	PF13248.1	gi|379003780|ref|YP_005259452.1|	-	0.18	11.0	2.5	3	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|379003780|ref|YP_005259452.1|	-	0.23	11.8	0.5	0.23	11.8	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
UPF0547	PF10571.4	gi|379003780|ref|YP_005259452.1|	-	0.37	10.5	4.9	1	9.1	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn_Tnp_IS1595	PF12760.2	gi|379003780|ref|YP_005259452.1|	-	0.43	10.4	4.3	8.8	6.2	0.5	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|379003780|ref|YP_005259452.1|	-	0.63	9.9	4.7	14	5.6	3.2	2.2	1	1	0	1	1	1	0	Rubredoxin
FYDLN_acid	PF09538.5	gi|379003780|ref|YP_005259452.1|	-	0.72	10.4	2.8	3.1	8.4	1.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
DUF4379	PF14311.1	gi|379003780|ref|YP_005259452.1|	-	0.76	9.6	4.1	1.7	8.4	2.8	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4379)
zf-trcl	PF13451.1	gi|379003780|ref|YP_005259452.1|	-	2.5	7.7	9.6	7.3	6.3	2.8	2.2	1	1	1	2	2	2	0	Probable	zinc-binding	domain
zinc_ribbon_5	PF13719.1	gi|379003780|ref|YP_005259452.1|	-	6.7	6.3	6.8	1.3e+02	2.2	4.8	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379003780|ref|YP_005259452.1|	-	8.5	6.1	7.2	1.2e+02	2.4	5.0	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379003781|ref|YP_005259453.1|	-	0.011	15.0	1.5	0.023	14.0	1.0	1.5	1	1	0	1	1	1	0	TFIIB	zinc-binding
DUF35_N	PF12172.3	gi|379003781|ref|YP_005259453.1|	-	0.074	12.9	11.0	1.1	9.2	0.5	3.4	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
PaRep2b	PF07775.6	gi|379003782|ref|YP_005259454.1|	-	5e-135	450.6	23.3	1.3e-89	300.8	6.3	2.0	1	1	0	2	2	2	2	PaRep2b	protein
Pro_Al_protease	PF02983.9	gi|379003782|ref|YP_005259454.1|	-	0.23	11.4	2.0	0.64	10.0	0.0	2.8	4	0	0	4	4	4	0	Alpha-lytic	protease	prodomain
HEPN	PF05168.9	gi|379003783|ref|YP_005259455.1|	-	1.1e-34	118.7	0.4	1.3e-34	118.5	0.3	1.0	1	0	0	1	1	1	1	HEPN	domain
PaREP1	PF05942.6	gi|379003783|ref|YP_005259455.1|	-	0.0026	17.6	4.9	0.0082	15.9	3.4	2.1	1	1	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Imm43	PF15602.1	gi|379003783|ref|YP_005259455.1|	-	0.058	13.3	0.3	0.073	13.0	0.2	1.1	1	0	0	1	1	1	0	Immunity	protein	43
DUF4398	PF14346.1	gi|379003783|ref|YP_005259455.1|	-	0.15	12.1	1.2	0.6	10.1	0.2	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
NTP_transf_2	PF01909.18	gi|379003784|ref|YP_005259456.1|	-	1.1e-08	35.2	0.1	1.3e-08	35.0	0.1	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
ABC-3	PF00950.12	gi|379003784|ref|YP_005259456.1|	-	0.0059	15.9	0.0	0.0073	15.6	0.0	1.1	1	0	0	1	1	1	1	ABC	3	transport	family
HTH_31	PF13560.1	gi|379003785|ref|YP_005259457.1|	-	0.072	13.2	0.5	0.51	10.5	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix	domain
FAA_hydrolase	PF01557.13	gi|379003786|ref|YP_005259458.1|	-	1.1e-71	240.7	0.0	1.6e-71	240.2	0.0	1.2	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DHDPS	PF00701.17	gi|379003787|ref|YP_005259459.1|	-	6.1e-44	149.7	0.0	6.9e-44	149.5	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
AMP-binding	PF00501.23	gi|379003789|ref|YP_005259461.1|	-	5.8e-85	285.1	0.1	7.9e-85	284.7	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379003789|ref|YP_005259461.1|	-	2.5e-24	86.0	0.3	5.5e-24	84.8	0.2	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
PapJ	PF14855.1	gi|379003789|ref|YP_005259461.1|	-	0.12	11.8	0.0	1	8.7	0.0	2.0	2	0	0	2	2	2	0	Pilus-assembly	fibrillin	subunit,	chaperone
T2SE	PF00437.15	gi|379003790|ref|YP_005259462.1|	-	1.5e-14	53.5	0.1	2.3e-14	52.9	0.1	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_17	PF13207.1	gi|379003790|ref|YP_005259462.1|	-	2.8e-06	28.1	0.1	2.8e-05	24.9	0.0	2.5	3	0	0	3	3	2	1	AAA	domain
AAA_18	PF13238.1	gi|379003790|ref|YP_005259462.1|	-	0.00017	21.8	0.0	0.00071	19.8	0.0	2.2	2	0	0	2	2	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003790|ref|YP_005259462.1|	-	0.0016	18.1	0.0	0.0047	16.6	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|379003790|ref|YP_005259462.1|	-	0.0018	18.1	0.0	0.0053	16.6	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|379003790|ref|YP_005259462.1|	-	0.0031	17.5	0.0	0.0065	16.4	0.0	1.5	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379003790|ref|YP_005259462.1|	-	0.0032	16.8	1.0	0.012	15.0	0.7	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379003790|ref|YP_005259462.1|	-	0.0034	17.2	0.0	0.023	14.5	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379003790|ref|YP_005259462.1|	-	0.0052	16.2	0.0	0.01	15.3	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
Zeta_toxin	PF06414.7	gi|379003790|ref|YP_005259462.1|	-	0.0055	15.8	0.1	0.011	14.8	0.1	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_28	PF13521.1	gi|379003790|ref|YP_005259462.1|	-	0.0059	16.5	0.0	0.016	15.2	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
Viral_helicase1	PF01443.13	gi|379003790|ref|YP_005259462.1|	-	0.0065	16.0	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
SRP54	PF00448.17	gi|379003790|ref|YP_005259462.1|	-	0.011	15.2	0.0	0.018	14.4	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Sigma54_activ_2	PF14532.1	gi|379003790|ref|YP_005259462.1|	-	0.011	15.8	0.0	0.052	13.5	0.0	2.0	2	0	0	2	2	2	0	Sigma-54	interaction	domain
ATP_bind_1	PF03029.12	gi|379003790|ref|YP_005259462.1|	-	0.012	15.1	0.1	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
AAA_22	PF13401.1	gi|379003790|ref|YP_005259462.1|	-	0.013	15.6	0.0	0.031	14.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|379003790|ref|YP_005259462.1|	-	0.022	13.5	0.3	0.057	12.1	0.0	1.7	2	0	0	2	2	2	0	ArgK	protein
AAA	PF00004.24	gi|379003790|ref|YP_005259462.1|	-	0.022	14.9	0.0	0.047	13.8	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
UPF0079	PF02367.12	gi|379003790|ref|YP_005259462.1|	-	0.024	14.2	0.0	0.055	13.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_30	PF13604.1	gi|379003790|ref|YP_005259462.1|	-	0.026	14.1	0.1	0.05	13.1	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|379003790|ref|YP_005259462.1|	-	0.033	13.5	0.0	0.062	12.7	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
RuvB_N	PF05496.7	gi|379003790|ref|YP_005259462.1|	-	0.04	12.9	0.0	0.079	11.9	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Thymidylate_kin	PF02223.12	gi|379003790|ref|YP_005259462.1|	-	0.05	12.9	0.0	0.14	11.5	0.0	1.8	1	1	1	2	2	2	0	Thymidylate	kinase
AAA_10	PF12846.2	gi|379003790|ref|YP_005259462.1|	-	0.061	12.7	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
ABC_tran	PF00005.22	gi|379003790|ref|YP_005259462.1|	-	0.073	13.3	0.0	0.18	12.1	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.9	gi|379003790|ref|YP_005259462.1|	-	0.073	12.7	0.0	0.21	11.3	0.0	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NACHT	PF05729.7	gi|379003790|ref|YP_005259462.1|	-	0.076	12.6	0.1	0.14	11.8	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
KTI12	PF08433.5	gi|379003790|ref|YP_005259462.1|	-	0.11	11.6	0.0	0.23	10.6	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_29	PF13555.1	gi|379003790|ref|YP_005259462.1|	-	0.18	11.3	0.0	0.39	10.2	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Methyltransf_23	PF13489.1	gi|379003791|ref|YP_005259463.1|	-	9.4e-21	74.1	0.0	1.3e-20	73.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379003791|ref|YP_005259463.1|	-	3.8e-13	49.7	0.0	5.8e-13	49.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003791|ref|YP_005259463.1|	-	7.1e-12	45.9	0.1	2.9e-11	43.9	0.0	1.9	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379003791|ref|YP_005259463.1|	-	5.2e-10	39.1	0.0	5e-09	35.9	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003791|ref|YP_005259463.1|	-	4.5e-09	36.6	0.0	1.1e-08	35.3	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|379003791|ref|YP_005259463.1|	-	5.6e-07	29.7	0.1	1e-06	28.8	0.0	1.4	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_25	PF13649.1	gi|379003791|ref|YP_005259463.1|	-	2.8e-05	24.4	0.0	8.3e-05	22.8	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379003791|ref|YP_005259463.1|	-	7.6e-05	22.7	0.2	0.00018	21.4	0.1	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|379003791|ref|YP_005259463.1|	-	0.00011	21.8	0.0	0.00018	21.0	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.15	gi|379003791|ref|YP_005259463.1|	-	0.00017	20.6	0.0	0.00027	20.0	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
CMAS	PF02353.15	gi|379003791|ref|YP_005259463.1|	-	0.0003	19.9	0.0	0.00049	19.2	0.0	1.5	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
PrmA	PF06325.8	gi|379003791|ref|YP_005259463.1|	-	0.0009	18.4	0.0	0.0015	17.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.9	gi|379003791|ref|YP_005259463.1|	-	0.00096	18.5	0.0	0.0017	17.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|379003791|ref|YP_005259463.1|	-	0.0014	17.7	0.1	0.0061	15.6	0.0	2.0	2	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Met_10	PF02475.11	gi|379003791|ref|YP_005259463.1|	-	0.013	15.1	0.0	0.021	14.3	0.0	1.3	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_32	PF13679.1	gi|379003791|ref|YP_005259463.1|	-	0.039	13.6	0.0	0.066	12.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0146	PF03686.8	gi|379003791|ref|YP_005259463.1|	-	0.04	13.7	0.1	0.076	12.8	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0146)
DREV	PF05219.7	gi|379003791|ref|YP_005259463.1|	-	0.053	12.3	0.0	0.067	12.0	0.0	1.3	1	0	0	1	1	1	0	DREV	methyltransferase
Methyltransf_9	PF08003.6	gi|379003791|ref|YP_005259463.1|	-	0.066	11.9	0.1	0.26	9.9	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1698)
TPMT	PF05724.6	gi|379003791|ref|YP_005259463.1|	-	0.076	12.4	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	Thiopurine	S-methyltransferase	(TPMT)
TehB	PF03848.9	gi|379003791|ref|YP_005259463.1|	-	0.081	12.0	0.0	0.12	11.5	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
MetW	PF07021.7	gi|379003791|ref|YP_005259463.1|	-	0.11	11.8	0.0	0.17	11.2	0.0	1.3	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Lactamase_B_2	PF12706.2	gi|379003792|ref|YP_005259464.1|	-	6.7e-28	97.5	0.0	9.6e-28	97.0	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379003792|ref|YP_005259464.1|	-	5.3e-11	42.5	3.9	2.9e-08	33.5	2.7	2.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|379003792|ref|YP_005259464.1|	-	0.004	16.8	0.1	0.025	14.2	0.1	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
RrnaAD	PF00398.15	gi|379003793|ref|YP_005259465.1|	-	1.8e-44	151.7	0.0	2.3e-44	151.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|379003793|ref|YP_005259465.1|	-	3.9e-09	36.5	0.0	8.6e-09	35.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003793|ref|YP_005259465.1|	-	9.4e-06	26.1	0.0	1.9e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379003793|ref|YP_005259465.1|	-	0.00053	19.6	0.0	0.00079	19.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379003793|ref|YP_005259465.1|	-	0.00059	20.2	0.0	0.0011	19.4	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379003793|ref|YP_005259465.1|	-	0.0045	16.3	0.0	0.0063	15.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.1	gi|379003793|ref|YP_005259465.1|	-	0.012	15.3	0.0	0.015	15.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003793|ref|YP_005259465.1|	-	0.032	14.7	0.0	0.06	13.8	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|379003793|ref|YP_005259465.1|	-	0.07	12.8	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
GatB_N	PF02934.10	gi|379003796|ref|YP_005259468.1|	-	9.2e-77	257.7	0.0	1.3e-76	257.2	0.0	1.1	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|379003796|ref|YP_005259468.1|	-	2.8e-12	46.5	3.7	1.1e-11	44.6	2.6	2.0	1	1	0	1	1	1	1	GatB	domain
GAD	PF02938.9	gi|379003796|ref|YP_005259468.1|	-	1.3e-09	38.0	0.0	6.5e-09	35.8	0.0	2.2	2	0	0	2	2	2	1	GAD	domain
Nop	PF01798.13	gi|379003797|ref|YP_005259469.1|	-	1.1e-48	164.3	0.1	2e-48	163.4	0.0	1.4	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
NOSIC	PF08060.8	gi|379003797|ref|YP_005259469.1|	-	5.7e-22	77.2	2.0	6.9e-22	76.9	0.2	2.1	2	0	0	2	2	2	1	NOSIC	(NUC001)	domain
KNOX2	PF03791.8	gi|379003797|ref|YP_005259469.1|	-	0.016	14.4	1.9	0.36	10.1	0.1	3.1	3	0	0	3	3	3	0	KNOX2	domain
HTH_24	PF13412.1	gi|379003799|ref|YP_005259471.1|	-	7.2e-08	31.6	0.1	1.2e-07	30.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|379003799|ref|YP_005259471.1|	-	1.8e-06	27.6	0.1	3.6e-06	26.6	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|379003799|ref|YP_005259471.1|	-	3e-06	26.6	0.1	6.6e-06	25.6	0.1	1.6	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|379003799|ref|YP_005259471.1|	-	6.9e-05	22.4	0.0	0.00015	21.3	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|379003799|ref|YP_005259471.1|	-	0.0042	16.7	0.0	0.0069	16.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_34	PF13601.1	gi|379003799|ref|YP_005259471.1|	-	0.011	15.7	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|379003799|ref|YP_005259471.1|	-	0.013	15.1	0.0	0.026	14.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|379003799|ref|YP_005259471.1|	-	0.05	13.7	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|379003799|ref|YP_005259471.1|	-	0.051	13.9	0.1	0.11	12.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|379003799|ref|YP_005259471.1|	-	0.063	13.2	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.17	gi|379003799|ref|YP_005259471.1|	-	0.087	12.5	0.0	0.14	11.9	0.0	1.4	1	0	0	1	1	1	0	MarR	family
PsbL	PF02419.12	gi|379003799|ref|YP_005259471.1|	-	0.12	11.8	0.1	0.27	10.6	0.1	1.6	1	0	0	1	1	1	0	PsbL	protein
IN_DBD_C	PF00552.16	gi|379003799|ref|YP_005259471.1|	-	0.22	10.9	1.4	1.1	8.7	0.3	2.3	2	0	0	2	2	2	0	Integrase	DNA	binding	domain
PsbX	PF06596.6	gi|379003799|ref|YP_005259471.1|	-	7.9	6.2	6.4	15	5.3	4.4	1.4	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	X	protein	(PsbX)
DUF650	PF04894.7	gi|379003801|ref|YP_005259473.1|	-	2.1e-37	129.1	0.0	2.5e-37	128.8	0.0	1.0	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
NTP_transf_2	PF01909.18	gi|379003802|ref|YP_005259474.1|	-	1.6e-09	37.9	1.4	5.7e-09	36.1	0.9	2.0	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DUF86	PF01934.12	gi|379003802|ref|YP_005259474.1|	-	1.8e-05	24.3	0.0	2.9e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
Nuc-transf	PF10127.4	gi|379003802|ref|YP_005259474.1|	-	0.021	14.1	0.1	0.035	13.4	0.0	1.4	1	0	0	1	1	1	0	Predicted	nucleotidyltransferase
PaRep2b	PF07775.6	gi|379003804|ref|YP_005259476.1|	-	5e-20	71.1	0.0	6e-20	70.9	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
PaRep2b	PF07775.6	gi|379003805|ref|YP_005259477.1|	-	8.1e-13	47.4	0.0	8.9e-13	47.2	0.0	1.1	1	0	0	1	1	1	1	PaRep2b	protein
EMG1	PF03587.9	gi|379003805|ref|YP_005259477.1|	-	0.15	11.3	0.0	0.15	11.3	0.0	1.1	1	0	0	1	1	1	0	EMG1/NEP1	methyltransferase
PaRep2b	PF07775.6	gi|379003808|ref|YP_005259480.1|	-	2e-40	138.5	0.3	2.4e-40	138.2	0.2	1.0	1	0	0	1	1	1	1	PaRep2b	protein
TPR_19	PF14559.1	gi|379003808|ref|YP_005259480.1|	-	0.00075	19.7	0.5	0.0025	18.1	0.3	1.9	1	0	0	1	1	1	1	Tetratricopeptide	repeat
FeoA	PF04023.9	gi|379003808|ref|YP_005259480.1|	-	0.0039	17.1	0.2	0.12	12.3	0.1	2.7	1	1	0	2	2	2	1	FeoA	domain
TPR_7	PF13176.1	gi|379003808|ref|YP_005259480.1|	-	0.0042	16.7	0.7	3.4	7.6	0.0	2.7	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|379003808|ref|YP_005259480.1|	-	0.0075	16.1	1.0	3.3	7.8	0.0	2.8	2	0	0	2	2	2	2	Tetratricopeptide	repeat
TPR_21	PF09976.4	gi|379003808|ref|YP_005259480.1|	-	0.014	15.2	1.8	0.014	15.2	1.3	1.7	1	1	0	1	1	1	0	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|379003808|ref|YP_005259480.1|	-	0.025	15.1	7.7	0.15	12.7	0.3	3.2	3	1	1	4	4	4	0	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|379003808|ref|YP_005259480.1|	-	0.027	14.2	0.1	6.3	6.8	0.0	2.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|379003808|ref|YP_005259480.1|	-	0.075	12.6	3.2	1.5	8.5	0.0	2.8	3	0	0	3	3	3	0	Tetratricopeptide	repeat
PaRep2b	PF07775.6	gi|379003809|ref|YP_005259481.1|	-	5.1e-15	54.6	2.0	6.1e-15	54.4	1.4	1.1	1	0	0	1	1	1	1	PaRep2b	protein
DUF1308	PF07000.6	gi|379003809|ref|YP_005259481.1|	-	0.052	12.1	0.0	0.062	11.9	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1308)
OsmC	PF02566.14	gi|379003809|ref|YP_005259481.1|	-	0.072	13.2	0.1	2.3	8.4	0.0	2.4	1	1	0	1	1	1	0	OsmC-like	protein
DUF1611	PF07755.6	gi|379003809|ref|YP_005259481.1|	-	0.11	11.1	0.2	0.4	9.2	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1611)
Fibrillarin	PF01269.12	gi|379003810|ref|YP_005259482.1|	-	5.7e-99	329.6	0.0	6.4e-99	329.5	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.14	gi|379003810|ref|YP_005259482.1|	-	1e-07	31.7	0.0	1.5e-07	31.1	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Glyco_hydro_31	PF01055.21	gi|379003810|ref|YP_005259482.1|	-	0.0044	15.8	0.0	1.3	7.7	0.0	2.0	2	0	0	2	2	2	2	Glycosyl	hydrolases	family	31
GCD14	PF08704.5	gi|379003810|ref|YP_005259482.1|	-	0.015	14.7	0.0	0.028	13.9	0.0	1.4	1	1	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Ubie_methyltran	PF01209.13	gi|379003810|ref|YP_005259482.1|	-	0.022	13.9	0.0	0.032	13.3	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|379003810|ref|YP_005259482.1|	-	0.13	11.8	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	domain
Pyr_redox_2	PF07992.9	gi|379003811|ref|YP_005259483.1|	-	6.8e-20	71.8	3.7	1.6e-18	67.3	2.5	3.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379003811|ref|YP_005259483.1|	-	3.4e-10	40.3	1.2	0.00014	22.0	0.0	2.2	1	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379003811|ref|YP_005259483.1|	-	7.7e-08	32.6	3.2	0.00055	20.2	0.2	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|379003811|ref|YP_005259483.1|	-	3.3e-06	26.7	0.6	0.026	14.0	0.0	3.2	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_2	PF00890.19	gi|379003811|ref|YP_005259483.1|	-	3.5e-06	26.1	8.6	0.078	11.8	0.6	3.2	3	0	0	3	3	3	3	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|379003811|ref|YP_005259483.1|	-	3.5e-06	26.9	3.9	3e-05	23.9	0.3	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|379003811|ref|YP_005259483.1|	-	9.5e-06	24.7	1.9	0.24	10.2	0.3	3.1	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FMO-like	PF00743.14	gi|379003811|ref|YP_005259483.1|	-	4.4e-05	21.8	0.0	0.0088	14.2	0.0	2.1	2	0	0	2	2	2	2	Flavin-binding	monooxygenase-like
Shikimate_DH	PF01488.15	gi|379003811|ref|YP_005259483.1|	-	4.7e-05	23.5	1.0	0.015	15.3	0.1	2.8	3	0	0	3	3	3	1	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.1	gi|379003811|ref|YP_005259483.1|	-	0.00042	20.5	2.0	0.53	10.5	0.1	2.6	2	1	0	2	2	2	2	Putative	NAD(P)-binding
HI0933_like	PF03486.9	gi|379003811|ref|YP_005259483.1|	-	0.00061	18.3	0.6	0.00061	18.3	0.4	2.7	3	0	0	3	3	3	1	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|379003811|ref|YP_005259483.1|	-	0.0011	18.1	1.7	0.092	11.7	0.1	2.1	2	0	0	2	2	2	2	FAD	binding	domain
GIDA	PF01134.17	gi|379003811|ref|YP_005259483.1|	-	0.014	14.3	7.7	2.3	6.9	0.4	3.7	4	0	0	4	4	4	0	Glucose	inhibited	division	protein	A
3HCDH_N	PF02737.13	gi|379003811|ref|YP_005259483.1|	-	0.016	14.8	1.3	0.43	10.2	0.1	2.2	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|379003811|ref|YP_005259483.1|	-	0.016	14.9	2.9	0.021	14.5	0.4	2.2	3	0	0	3	3	2	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.19	gi|379003811|ref|YP_005259483.1|	-	0.026	13.6	0.2	1.6	7.7	0.0	2.2	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_10	PF13460.1	gi|379003811|ref|YP_005259483.1|	-	0.22	11.5	3.0	13	5.7	0.0	3.1	3	0	0	3	3	3	0	NADH(P)-binding
Thi4	PF01946.12	gi|379003811|ref|YP_005259483.1|	-	0.25	10.4	1.8	0.31	10.0	0.1	1.8	2	0	0	2	2	2	0	Thi4	family
FAD_oxidored	PF12831.2	gi|379003811|ref|YP_005259483.1|	-	0.35	9.9	8.3	1.2	8.1	1.2	2.1	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
F420_oxidored	PF03807.12	gi|379003811|ref|YP_005259483.1|	-	0.63	10.5	3.3	3.1	8.2	0.1	2.9	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
Cytidylate_kin2	PF13189.1	gi|379003812|ref|YP_005259484.1|	-	1.3e-21	77.3	0.1	6.6e-20	71.7	0.1	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|379003812|ref|YP_005259484.1|	-	3.1e-19	69.5	0.0	4.1e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003812|ref|YP_005259484.1|	-	4.3e-14	53.3	0.0	6.2e-14	52.8	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379003812|ref|YP_005259484.1|	-	1.5e-09	37.8	0.4	3.2e-08	33.5	0.3	2.1	1	1	0	1	1	1	1	AAA	domain
Cytidylate_kin	PF02224.13	gi|379003812|ref|YP_005259484.1|	-	5.2e-09	35.7	0.2	7.9e-09	35.1	0.1	1.3	1	0	0	1	1	1	1	Cytidylate	kinase
SKI	PF01202.17	gi|379003812|ref|YP_005259484.1|	-	4.8e-07	29.7	0.7	5.3e-06	26.3	0.5	2.3	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.17	gi|379003812|ref|YP_005259484.1|	-	2e-05	24.5	0.0	3.1e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	Adenylate	kinase
PRK	PF00485.13	gi|379003812|ref|YP_005259484.1|	-	2.3e-05	24.0	0.2	0.013	15.0	0.0	2.2	1	1	1	2	2	2	2	Phosphoribulokinase	/	Uridine	kinase	family
AAA	PF00004.24	gi|379003812|ref|YP_005259484.1|	-	8e-05	22.8	0.0	0.00012	22.2	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|379003812|ref|YP_005259484.1|	-	0.00019	21.1	0.0	0.0004	20.0	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
Thymidylate_kin	PF02223.12	gi|379003812|ref|YP_005259484.1|	-	0.00057	19.3	0.0	0.51	9.6	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
CoaE	PF01121.15	gi|379003812|ref|YP_005259484.1|	-	0.00058	19.3	0.2	0.059	12.7	0.0	2.1	1	1	1	2	2	2	1	Dephospho-CoA	kinase
NB-ARC	PF00931.17	gi|379003812|ref|YP_005259484.1|	-	0.00067	18.6	0.2	0.0087	14.9	0.0	2.0	2	0	0	2	2	2	1	NB-ARC	domain
Zeta_toxin	PF06414.7	gi|379003812|ref|YP_005259484.1|	-	0.0012	17.9	0.1	0.0023	17.0	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
NTPase_1	PF03266.10	gi|379003812|ref|YP_005259484.1|	-	0.0012	18.5	0.0	0.0016	18.1	0.0	1.4	1	0	0	1	1	1	1	NTPase
AAA_16	PF13191.1	gi|379003812|ref|YP_005259484.1|	-	0.0017	18.4	0.0	0.007	16.3	0.0	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
KTI12	PF08433.5	gi|379003812|ref|YP_005259484.1|	-	0.0017	17.6	0.0	0.0021	17.3	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_28	PF13521.1	gi|379003812|ref|YP_005259484.1|	-	0.0018	18.2	0.2	0.0029	17.5	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|379003812|ref|YP_005259484.1|	-	0.0019	17.8	0.0	0.0031	17.2	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_5	PF07728.9	gi|379003812|ref|YP_005259484.1|	-	0.0032	17.1	0.0	0.0059	16.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|379003812|ref|YP_005259484.1|	-	0.0034	17.5	0.0	0.0059	16.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|379003812|ref|YP_005259484.1|	-	0.0076	15.9	0.1	0.016	14.8	0.1	1.9	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CPT	PF07931.7	gi|379003812|ref|YP_005259484.1|	-	0.0097	15.5	0.1	0.11	12.0	0.0	2.0	2	0	0	2	2	2	1	Chloramphenicol	phosphotransferase-like	protein
UPF0079	PF02367.12	gi|379003812|ref|YP_005259484.1|	-	0.01	15.4	0.1	0.019	14.6	0.0	1.6	1	1	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
DUF2075	PF09848.4	gi|379003812|ref|YP_005259484.1|	-	0.031	13.2	0.1	0.053	12.4	0.0	1.5	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|379003812|ref|YP_005259484.1|	-	0.034	13.6	0.0	0.047	13.2	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ABC_tran	PF00005.22	gi|379003812|ref|YP_005259484.1|	-	0.047	13.9	0.0	0.052	13.8	0.0	1.3	1	1	0	1	1	1	0	ABC	transporter
KaiC	PF06745.8	gi|379003812|ref|YP_005259484.1|	-	0.057	12.5	0.2	0.14	11.2	0.1	1.8	1	1	0	1	1	1	0	KaiC
RuvB_N	PF05496.7	gi|379003812|ref|YP_005259484.1|	-	0.068	12.2	0.1	0.16	11.0	0.0	1.5	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
APS_kinase	PF01583.15	gi|379003812|ref|YP_005259484.1|	-	0.069	12.8	0.0	0.095	12.3	0.0	1.5	1	1	0	1	1	1	0	Adenylylsulphate	kinase
MMR_HSR1	PF01926.18	gi|379003812|ref|YP_005259484.1|	-	0.073	13.0	0.0	0.13	12.2	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.1	gi|379003812|ref|YP_005259484.1|	-	0.09	12.3	0.1	0.21	11.1	0.1	1.6	1	1	1	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|379003812|ref|YP_005259484.1|	-	0.098	12.1	0.0	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_24	PF13479.1	gi|379003812|ref|YP_005259484.1|	-	0.11	12.1	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379003812|ref|YP_005259484.1|	-	0.11	11.8	0.1	0.27	10.6	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
AAA_2	PF07724.9	gi|379003812|ref|YP_005259484.1|	-	0.12	12.2	0.0	0.17	11.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
RNA_helicase	PF00910.17	gi|379003812|ref|YP_005259484.1|	-	0.13	12.4	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Ribosomal_L34e	PF01199.13	gi|379003813|ref|YP_005259485.1|	-	1.8e-26	92.1	1.6	2e-26	92.0	1.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L34e
GTP_EFTU	PF00009.22	gi|379003814|ref|YP_005259486.1|	-	3e-52	176.8	0.0	7.9e-52	175.4	0.0	1.6	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|379003814|ref|YP_005259486.1|	-	4.1e-30	103.8	0.2	6.3e-29	100.0	0.0	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|379003814|ref|YP_005259486.1|	-	2.1e-19	69.3	6.5	6.9e-19	67.7	3.5	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|379003814|ref|YP_005259486.1|	-	2.3e-10	39.9	1.4	8e-10	38.2	1.0	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|379003814|ref|YP_005259486.1|	-	7e-06	25.9	0.0	1.7e-05	24.7	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|379003814|ref|YP_005259486.1|	-	0.00055	19.2	0.3	0.023	13.9	0.1	2.8	2	1	0	2	2	2	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|379003814|ref|YP_005259486.1|	-	0.00064	20.2	0.0	0.0023	18.3	0.0	1.9	1	1	0	1	1	1	1	Miro-like	protein
Septin	PF00735.13	gi|379003814|ref|YP_005259486.1|	-	0.0011	18.0	0.0	0.0024	16.9	0.0	1.5	1	0	0	1	1	1	1	Septin
Dynamin_N	PF00350.18	gi|379003814|ref|YP_005259486.1|	-	0.0065	16.3	0.1	1.1	9.0	0.0	2.4	1	1	1	2	2	2	1	Dynamin	family
Gtr1_RagA	PF04670.7	gi|379003814|ref|YP_005259486.1|	-	0.028	13.5	0.0	0.06	12.4	0.0	1.4	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
DUF87	PF01935.12	gi|379003815|ref|YP_005259487.1|	-	6.9e-43	147.1	0.0	1.4e-42	146.1	0.0	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|379003815|ref|YP_005259487.1|	-	2.8e-23	82.8	0.0	8.2e-23	81.2	0.0	1.7	1	1	0	1	1	1	1	AAA-like	domain
HAS-barrel	PF09378.5	gi|379003815|ref|YP_005259487.1|	-	1.6e-05	24.6	1.1	5.6e-05	22.9	0.7	1.9	2	0	0	2	2	2	1	HAS	barrel	domain
FtsK_SpoIIIE	PF01580.13	gi|379003815|ref|YP_005259487.1|	-	3.2e-05	23.4	0.0	0.11	11.9	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
DUF853	PF05872.7	gi|379003815|ref|YP_005259487.1|	-	8.4e-05	21.1	0.0	0.034	12.5	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
TrwB_AAD_bind	PF10412.4	gi|379003815|ref|YP_005259487.1|	-	0.0021	16.7	0.0	0.023	13.3	0.0	2.3	3	0	0	3	3	3	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Zot	PF05707.7	gi|379003815|ref|YP_005259487.1|	-	0.0029	17.1	0.0	0.0091	15.4	0.0	1.8	1	0	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_22	PF13401.1	gi|379003815|ref|YP_005259487.1|	-	0.072	13.2	0.0	7.5	6.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
Diphthamide_syn	PF01866.12	gi|379003816|ref|YP_005259488.1|	-	3e-25	89.1	0.0	9e-21	74.4	0.0	2.1	2	0	0	2	2	2	2	Putative	diphthamide	synthesis	protein
Topoisom_bac	PF01131.15	gi|379003817|ref|YP_005259489.1|	-	1.7e-100	336.6	0.0	2.3e-100	336.2	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|379003817|ref|YP_005259489.1|	-	2.3e-16	59.5	0.0	6.4e-16	58.1	0.0	1.8	1	0	0	1	1	1	1	Toprim	domain
Toprim_4	PF13662.1	gi|379003817|ref|YP_005259489.1|	-	0.00072	19.5	0.0	0.0017	18.2	0.0	1.7	1	0	0	1	1	1	1	Toprim	domain
Integrase_AP2	PF14657.1	gi|379003817|ref|YP_005259489.1|	-	0.0079	15.9	0.1	0.031	14.0	0.0	2.1	1	0	0	1	1	1	1	AP2-like	DNA-binding	integrase	domain
DUF751	PF05421.6	gi|379003818|ref|YP_005259490.1|	-	0.029	14.6	4.8	0.044	14.0	3.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF751)
NfeD	PF01957.13	gi|379003818|ref|YP_005259490.1|	-	0.15	12.2	6.5	0.18	11.9	4.5	1.1	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF2231	PF09990.4	gi|379003818|ref|YP_005259490.1|	-	0.2	12.0	4.7	0.26	11.6	3.3	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2231)
Herpes_gE	PF02480.11	gi|379003818|ref|YP_005259490.1|	-	8.3	4.5	6.9	0.72	8.0	0.8	2.0	1	1	1	2	2	2	0	Alphaherpesvirus	glycoprotein	E
DEAD_2	PF06733.10	gi|379003819|ref|YP_005259491.1|	-	1.6e-26	92.8	0.4	2.3e-26	92.2	0.3	1.3	1	0	0	1	1	1	1	DEAD_2
Helicase_C_2	PF13307.1	gi|379003819|ref|YP_005259491.1|	-	1e-24	87.3	0.0	2.6e-24	86.0	0.0	1.7	1	1	0	1	1	1	1	Helicase	C-terminal	domain
DEAD	PF00270.24	gi|379003819|ref|YP_005259491.1|	-	4.1e-05	23.1	0.0	0.00028	20.4	0.0	2.1	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|379003819|ref|YP_005259491.1|	-	8.8e-05	22.4	0.0	0.026	14.3	0.0	2.2	2	0	0	2	2	2	2	Type	III	restriction	enzyme,	res	subunit
AAA_10	PF12846.2	gi|379003819|ref|YP_005259491.1|	-	0.0095	15.4	0.0	0.11	11.8	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
SNF2_N	PF00176.18	gi|379003819|ref|YP_005259491.1|	-	0.076	11.8	0.2	0.16	10.7	0.0	1.5	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
PaaX	PF07848.7	gi|379003819|ref|YP_005259491.1|	-	0.088	12.8	0.1	0.53	10.3	0.0	2.2	1	1	1	2	2	2	0	PaaX-like	protein
AAA_19	PF13245.1	gi|379003819|ref|YP_005259491.1|	-	0.088	12.5	0.3	0.3	10.8	0.1	2.0	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_11	PF13086.1	gi|379003819|ref|YP_005259491.1|	-	0.091	12.3	0.0	4.2	6.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
QRPTase_C	PF01729.14	gi|379003820|ref|YP_005259492.1|	-	2.9e-16	59.4	0.0	4.2e-16	58.9	0.0	1.3	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|379003820|ref|YP_005259492.1|	-	6.1e-05	22.7	0.0	0.00012	21.7	0.0	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
FAD_binding_3	PF01494.14	gi|379003821|ref|YP_005259493.1|	-	5.9e-16	58.4	2.8	3.1e-10	39.6	0.0	3.2	2	1	1	3	3	3	3	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|379003821|ref|YP_005259493.1|	-	1.1e-07	31.3	0.0	1.1e-07	31.3	0.0	1.7	2	0	0	2	2	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379003821|ref|YP_005259493.1|	-	1.5e-05	24.9	0.3	1.5e-05	24.9	0.2	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|379003821|ref|YP_005259493.1|	-	1.8e-05	23.9	0.4	3.5e-05	23.0	0.0	1.7	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.17	gi|379003821|ref|YP_005259493.1|	-	6.3e-05	22.0	0.0	6.3e-05	22.0	0.0	1.8	2	0	0	2	2	1	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|379003821|ref|YP_005259493.1|	-	6.7e-05	21.9	0.7	0.016	14.1	0.0	2.3	2	1	0	2	2	2	2	Lycopene	cyclase	protein
FAD_binding_2	PF00890.19	gi|379003821|ref|YP_005259493.1|	-	0.00011	21.2	0.1	0.00011	21.2	0.0	1.7	2	0	0	2	2	2	1	FAD	binding	domain
DAO	PF01266.19	gi|379003821|ref|YP_005259493.1|	-	0.00012	21.1	0.2	0.00042	19.3	0.0	1.8	1	1	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379003821|ref|YP_005259493.1|	-	0.00031	19.3	0.1	0.0005	18.6	0.1	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Trp_halogenase	PF04820.9	gi|379003821|ref|YP_005259493.1|	-	0.00071	18.3	0.1	0.4	9.2	0.0	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|379003821|ref|YP_005259493.1|	-	0.021	14.8	0.1	0.021	14.8	0.0	2.6	3	0	0	3	3	2	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|379003821|ref|YP_005259493.1|	-	0.045	14.1	0.0	0.1	12.9	0.0	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|379003821|ref|YP_005259493.1|	-	0.066	12.7	0.2	0.18	11.3	0.0	1.8	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
CxxCxxCC	PF03692.10	gi|379003822|ref|YP_005259494.1|	-	4.2e-11	43.1	0.0	5.7e-11	42.7	0.0	1.2	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DHBP_synthase	PF00926.14	gi|379003823|ref|YP_005259495.1|	-	4.6e-48	163.0	0.0	5.2e-48	162.8	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
Ribosomal_L7Ae	PF01248.21	gi|379003823|ref|YP_005259495.1|	-	0.021	14.3	0.2	0.19	11.2	0.0	2.3	2	0	0	2	2	2	0	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
vATP-synt_AC39	PF01992.11	gi|379003823|ref|YP_005259495.1|	-	0.093	11.8	0.2	4	6.4	0.0	2.1	2	0	0	2	2	2	0	ATP	synthase	(C/AC39)	subunit
RibD_C	PF01872.12	gi|379003824|ref|YP_005259496.1|	-	5e-49	166.6	0.0	5.6e-49	166.4	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
PrpR_N	PF06506.6	gi|379003824|ref|YP_005259496.1|	-	0.0045	16.4	0.0	0.0073	15.7	0.0	1.3	1	0	0	1	1	1	1	Propionate	catabolism	activator
DRTGG	PF07085.7	gi|379003824|ref|YP_005259496.1|	-	0.057	13.0	0.1	0.16	11.5	0.1	1.9	1	1	1	2	2	2	0	DRTGG	domain
GGDN	PF05165.7	gi|379003825|ref|YP_005259497.1|	-	1.2e-31	109.6	0.0	2.7e-29	101.9	0.0	2.0	1	1	0	1	1	1	1	GGDN	family
Creatininase	PF02633.9	gi|379003826|ref|YP_005259498.1|	-	5.2e-39	133.7	0.0	8.3e-39	133.0	0.0	1.3	1	1	0	1	1	1	1	Creatinine	amidohydrolase
MoeZ_MoeB	PF05237.8	gi|379003826|ref|YP_005259498.1|	-	0.066	12.8	0.0	0.23	11.0	0.0	1.8	2	0	0	2	2	2	0	MoeZ/MoeB	domain
Chordopox_A30L	PF06015.7	gi|379003827|ref|YP_005259499.1|	-	0.032	13.8	0.3	0.043	13.4	0.2	1.3	1	0	0	1	1	1	0	Chordopoxvirus	A30L	protein
SpoIIIAH	PF12685.2	gi|379003827|ref|YP_005259499.1|	-	0.07	12.6	7.1	0.083	12.3	4.9	1.0	1	0	0	1	1	1	0	SpoIIIAH-like	protein
DUF4041	PF13250.1	gi|379003827|ref|YP_005259499.1|	-	0.088	12.3	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4041)
Tic22	PF04278.7	gi|379003827|ref|YP_005259499.1|	-	0.23	10.7	1.6	0.26	10.5	1.1	1.1	1	0	0	1	1	1	0	Tic22-like	family
Rad50_zn_hook	PF04423.9	gi|379003827|ref|YP_005259499.1|	-	0.23	10.9	5.8	1.3	8.5	0.1	2.2	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
Dpoe2NT	PF12213.3	gi|379003827|ref|YP_005259499.1|	-	0.7	9.8	4.1	4.6	7.2	1.0	2.1	1	1	1	2	2	2	0	DNA	polymerases	epsilon	N	terminal
Phage_DsbA	PF11126.3	gi|379003827|ref|YP_005259499.1|	-	1.3	9.1	4.5	5.4	7.1	0.1	2.1	2	0	0	2	2	2	0	Transcriptional	regulator	DsbA
Hist_deacetyl	PF00850.14	gi|379003828|ref|YP_005259500.1|	-	9.2e-71	238.6	0.0	1.1e-70	238.3	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
Prim-Pol	PF09250.6	gi|379003828|ref|YP_005259500.1|	-	0.12	12.3	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Bifunctional	DNA	primase/polymerase,	N-terminal
Pribosyltran_N	PF13793.1	gi|379003829|ref|YP_005259501.1|	-	3.8e-20	71.7	0.0	2.7e-19	69.0	0.0	2.1	2	0	0	2	2	2	1	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.22	gi|379003829|ref|YP_005259501.1|	-	1.6e-13	50.4	0.1	4e-13	49.1	0.1	1.6	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.1	gi|379003829|ref|YP_005259501.1|	-	5.7e-07	29.4	0.1	1.6e-06	27.9	0.0	1.7	1	1	0	1	1	1	1	Phosphoribosyl	synthetase-associated	domain
PRTase_2	PF15609.1	gi|379003829|ref|YP_005259501.1|	-	0.00056	19.2	0.1	0.00087	18.6	0.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase
UPRTase	PF14681.1	gi|379003829|ref|YP_005259501.1|	-	0.0098	15.1	0.0	0.016	14.4	0.0	1.3	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Methyltransf_11	PF08241.7	gi|379003830|ref|YP_005259502.1|	-	6.4e-10	39.4	0.0	9.7e-10	38.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003830|ref|YP_005259502.1|	-	5e-08	33.2	0.0	8.1e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|379003830|ref|YP_005259502.1|	-	4e-05	22.8	0.0	7e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_31	PF13847.1	gi|379003830|ref|YP_005259502.1|	-	0.00019	21.0	0.0	0.00039	20.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379003830|ref|YP_005259502.1|	-	0.00022	21.7	0.0	0.00068	20.2	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|379003830|ref|YP_005259502.1|	-	0.00045	19.3	0.0	0.00057	19.0	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_26	PF13659.1	gi|379003830|ref|YP_005259502.1|	-	0.00069	19.6	0.1	0.0015	18.5	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379003830|ref|YP_005259502.1|	-	0.0018	18.0	0.0	0.0047	16.6	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|379003830|ref|YP_005259502.1|	-	0.061	12.8	0.1	0.25	10.8	0.1	1.9	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.7	gi|379003830|ref|YP_005259502.1|	-	0.13	11.6	0.0	0.18	11.1	0.0	1.2	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Sua5_yciO_yrdC	PF01300.13	gi|379003831|ref|YP_005259503.1|	-	1.7e-52	177.2	0.0	2.8e-52	176.5	0.0	1.3	1	0	0	1	1	1	1	Telomere	recombination
SUA5	PF03481.8	gi|379003831|ref|YP_005259503.1|	-	1.3e-29	102.8	0.0	1.8e-29	102.3	0.0	1.2	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
NAD_binding_2	PF03446.10	gi|379003832|ref|YP_005259504.1|	-	2.1e-18	66.6	0.0	6.1e-18	65.1	0.0	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|379003832|ref|YP_005259504.1|	-	2.1e-10	40.6	0.8	3.5e-10	40.0	0.5	1.3	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379003832|ref|YP_005259504.1|	-	1.1e-05	25.1	0.1	2.6e-05	24.0	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.14	gi|379003832|ref|YP_005259504.1|	-	3.3e-05	23.1	0.0	6.6e-05	22.1	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|379003832|ref|YP_005259504.1|	-	4e-05	23.3	0.0	8.1e-05	22.3	0.0	1.6	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379003832|ref|YP_005259504.1|	-	0.00021	21.6	0.0	0.0015	18.8	0.0	2.4	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_10	PF13460.1	gi|379003832|ref|YP_005259504.1|	-	0.0017	18.3	0.4	0.0047	16.9	0.1	1.8	2	1	0	2	2	2	1	NADH(P)-binding
Shikimate_DH	PF01488.15	gi|379003832|ref|YP_005259504.1|	-	0.002	18.1	0.0	0.006	16.6	0.0	1.8	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
ApbA	PF02558.11	gi|379003832|ref|YP_005259504.1|	-	0.0029	17.0	0.0	0.0052	16.2	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.1	gi|379003832|ref|YP_005259504.1|	-	0.0048	17.2	0.1	0.017	15.4	0.0	2.0	2	1	0	2	2	2	1	XdhC	Rossmann	domain
Pyr_redox_2	PF07992.9	gi|379003832|ref|YP_005259504.1|	-	0.013	15.4	0.3	0.074	12.9	0.2	2.3	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|379003832|ref|YP_005259504.1|	-	0.11	11.8	0.0	1.1	8.6	0.0	2.3	3	0	0	3	3	3	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
tRNA-synt_2	PF00152.15	gi|379003834|ref|YP_005259506.1|	-	3.4e-81	272.6	0.0	5.1e-81	272.0	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|379003834|ref|YP_005259506.1|	-	6.8e-14	51.4	0.0	1.4e-13	50.4	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|379003834|ref|YP_005259506.1|	-	0.0019	17.4	0.2	0.017	14.3	0.0	2.3	3	0	0	3	3	3	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2b	PF00587.20	gi|379003834|ref|YP_005259506.1|	-	0.0069	15.9	0.1	1.7	8.2	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
AAA_18	PF13238.1	gi|379003835|ref|YP_005259507.1|	-	4.5e-15	56.1	0.0	7.1e-15	55.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379003835|ref|YP_005259507.1|	-	2e-10	41.5	0.1	4.2e-10	40.4	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|379003835|ref|YP_005259507.1|	-	3e-05	24.0	0.1	5.6e-05	23.1	0.1	1.5	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|379003835|ref|YP_005259507.1|	-	0.00037	20.2	1.3	0.0013	18.5	0.3	2.0	1	1	1	2	2	2	1	NTPase
ADK	PF00406.17	gi|379003835|ref|YP_005259507.1|	-	0.00038	20.3	0.6	0.00075	19.4	0.1	1.7	2	0	0	2	2	2	1	Adenylate	kinase
AAA	PF00004.24	gi|379003835|ref|YP_005259507.1|	-	0.00046	20.3	0.1	0.00074	19.7	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|379003835|ref|YP_005259507.1|	-	0.0015	18.4	0.3	0.0036	17.1	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379003835|ref|YP_005259507.1|	-	0.0017	18.5	0.1	0.0098	16.0	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
SKI	PF01202.17	gi|379003835|ref|YP_005259507.1|	-	0.0036	17.1	0.1	1.5	8.6	0.0	2.1	2	0	0	2	2	2	2	Shikimate	kinase
AAA_19	PF13245.1	gi|379003835|ref|YP_005259507.1|	-	0.004	16.8	0.7	0.0085	15.8	0.5	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379003835|ref|YP_005259507.1|	-	0.0051	16.8	0.1	0.017	15.0	0.1	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.17	gi|379003835|ref|YP_005259507.1|	-	0.0065	15.9	0.5	0.011	15.1	0.4	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|379003835|ref|YP_005259507.1|	-	0.025	14.2	0.5	0.063	12.9	0.1	1.8	1	1	1	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.1	gi|379003835|ref|YP_005259507.1|	-	0.028	13.9	0.4	0.058	12.9	0.2	1.4	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|379003835|ref|YP_005259507.1|	-	0.044	13.3	0.2	0.079	12.4	0.2	1.5	1	1	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
RuvB_N	PF05496.7	gi|379003835|ref|YP_005259507.1|	-	0.05	12.6	0.0	0.076	12.0	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Thymidylate_kin	PF02223.12	gi|379003835|ref|YP_005259507.1|	-	0.052	12.9	0.2	0.17	11.2	0.1	1.9	1	1	1	2	2	2	0	Thymidylate	kinase
Rsm22	PF09243.5	gi|379003835|ref|YP_005259507.1|	-	0.098	11.6	0.1	0.12	11.4	0.0	1.1	1	0	0	1	1	1	0	Mitochondrial	small	ribosomal	subunit	Rsm22
AAA_3	PF07726.6	gi|379003835|ref|YP_005259507.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Viral_helicase1	PF01443.13	gi|379003835|ref|YP_005259507.1|	-	0.14	11.6	0.1	0.31	10.5	0.0	1.6	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
DUF354	PF04007.7	gi|379003837|ref|YP_005259509.1|	-	3.2e-43	147.8	0.0	4.3e-43	147.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF354)
tRNA-synt_1c	PF00749.16	gi|379003838|ref|YP_005259510.1|	-	9.9e-71	237.9	0.0	1.3e-70	237.5	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|379003838|ref|YP_005259510.1|	-	4.1e-24	85.1	0.0	8.1e-24	84.2	0.0	1.5	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
NTP_transferase	PF00483.18	gi|379003839|ref|YP_005259511.1|	-	6.8e-36	123.8	0.0	8.1e-36	123.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|379003839|ref|YP_005259511.1|	-	7.5e-14	52.1	0.0	9.8e-14	51.7	0.0	1.3	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|379003839|ref|YP_005259511.1|	-	0.00013	21.5	0.0	0.00032	20.2	0.0	1.8	1	1	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CBS	PF00571.23	gi|379003844|ref|YP_005259516.1|	-	5.5e-36	122.1	5.9	2.6e-18	65.5	0.6	2.1	2	0	0	2	2	2	2	CBS	domain
DUF3659	PF12396.3	gi|379003844|ref|YP_005259516.1|	-	0.018	14.7	0.8	2.2	7.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3659)
PRC	PF05239.11	gi|379003844|ref|YP_005259516.1|	-	0.025	14.4	6.0	0.065	13.1	0.1	3.1	1	1	1	2	2	2	0	PRC-barrel	domain
Trypsin_2	PF13365.1	gi|379003844|ref|YP_005259516.1|	-	0.073	13.0	0.1	3.1	7.8	0.0	2.2	2	0	0	2	2	2	0	Trypsin-like	peptidase	domain
DUF309	PF03745.9	gi|379003845|ref|YP_005259517.1|	-	2.4e-18	65.3	0.1	4.1e-18	64.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
ABM	PF03992.11	gi|379003845|ref|YP_005259517.1|	-	0.058	13.4	0.1	1.7	8.7	0.0	2.9	3	1	0	3	3	3	0	Antibiotic	biosynthesis	monooxygenase
SIR2	PF02146.12	gi|379003846|ref|YP_005259518.1|	-	2.5e-53	180.4	0.0	3.1e-53	180.1	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
zinc_ribbon_4	PF13717.1	gi|379003846|ref|YP_005259518.1|	-	0.0088	15.7	0.2	0.018	14.7	0.1	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379003846|ref|YP_005259518.1|	-	0.012	15.1	0.2	0.025	14.1	0.1	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003846|ref|YP_005259518.1|	-	0.037	13.5	1.2	1.6	8.3	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|379003846|ref|YP_005259518.1|	-	0.061	13.0	0.5	2.5	7.8	0.0	2.4	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.1	gi|379003846|ref|YP_005259518.1|	-	0.061	12.5	1.9	0.23	10.6	1.2	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
DZR	PF12773.2	gi|379003846|ref|YP_005259518.1|	-	0.07	12.9	0.1	0.15	11.9	0.1	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|379003846|ref|YP_005259518.1|	-	0.082	12.6	0.2	0.15	11.7	0.1	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS1595	PF12760.2	gi|379003846|ref|YP_005259518.1|	-	1.8	8.4	4.3	2.5	7.9	0.7	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
DUF192	PF02643.10	gi|379003847|ref|YP_005259519.1|	-	1.3e-20	73.0	0.0	1.7e-20	72.7	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1430
SBP_bac_3	PF00497.15	gi|379003848|ref|YP_005259520.1|	-	1.2e-51	175.1	0.2	1.4e-51	174.8	0.1	1.0	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
Phosphonate-bd	PF12974.2	gi|379003848|ref|YP_005259520.1|	-	0.0051	16.2	0.9	0.12	11.7	0.6	2.4	1	1	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
NMT1	PF09084.6	gi|379003848|ref|YP_005259520.1|	-	0.088	12.3	0.2	0.2	11.1	0.2	1.6	1	1	0	1	1	1	0	NMT1/THI5	like
LysR_substrate	PF03466.15	gi|379003848|ref|YP_005259520.1|	-	0.089	11.8	0.1	1.8	7.6	0.0	2.2	2	0	0	2	2	2	0	LysR	substrate	binding	domain
FtsJ	PF01728.14	gi|379003848|ref|YP_005259520.1|	-	0.17	11.8	0.2	0.38	10.7	0.1	1.7	1	1	1	2	2	2	0	FtsJ-like	methyltransferase
CbiA	PF01656.18	gi|379003853|ref|YP_005259525.1|	-	1.4e-09	37.6	0.0	3.4e-09	36.3	0.0	1.7	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|379003853|ref|YP_005259525.1|	-	1.4e-08	34.8	0.0	2.3e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|379003853|ref|YP_005259525.1|	-	4.2e-05	23.0	0.4	0.00014	21.3	0.3	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003853|ref|YP_005259525.1|	-	0.013	15.2	0.3	0.035	13.8	0.2	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
ArsA_ATPase	PF02374.10	gi|379003853|ref|YP_005259525.1|	-	0.015	14.3	0.0	0.024	13.6	0.0	1.3	1	0	0	1	1	1	0	Anion-transporting	ATPase
MipZ	PF09140.6	gi|379003853|ref|YP_005259525.1|	-	0.1	11.6	0.0	0.14	11.1	0.0	1.2	1	0	0	1	1	1	0	ATPase	MipZ
HAD_2	PF13419.1	gi|379003854|ref|YP_005259526.1|	-	2.8e-18	66.7	0.0	3.4e-18	66.4	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379003854|ref|YP_005259526.1|	-	1.6e-07	30.9	0.0	2.8e-07	30.1	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|379003854|ref|YP_005259526.1|	-	3.6e-06	27.5	0.1	7.3e-06	26.5	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|379003854|ref|YP_005259526.1|	-	0.047	13.5	0.0	2.5	8.0	0.0	2.4	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
tRNA_bind	PF01588.15	gi|379003857|ref|YP_005259529.1|	-	2.6e-26	91.2	0.4	3e-26	91.0	0.3	1.1	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
Prenyltransf	PF01255.14	gi|379003858|ref|YP_005259530.1|	-	8.4e-71	237.6	0.0	9.5e-71	237.4	0.0	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
SNARE_assoc	PF09335.6	gi|379003859|ref|YP_005259531.1|	-	4.1e-09	36.6	8.2	4.1e-09	36.6	5.7	2.6	2	1	1	3	3	3	1	SNARE	associated	Golgi	protein
Kinocilin	PF15033.1	gi|379003859|ref|YP_005259531.1|	-	1.5	8.3	6.5	0.33	10.4	1.8	1.8	2	0	0	2	2	2	0	Kinocilin	protein
DUF543	PF04418.7	gi|379003859|ref|YP_005259531.1|	-	2.4	8.1	5.5	7.9	6.5	0.7	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF543)
tRNA-synt_1g	PF09334.6	gi|379003860|ref|YP_005259532.1|	-	2e-145	484.3	0.0	2.5e-145	484.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|379003860|ref|YP_005259532.1|	-	3.4e-12	45.1	0.1	8.1e-07	27.4	0.0	3.4	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|379003860|ref|YP_005259532.1|	-	3.8e-08	33.2	0.3	6.8e-08	32.3	0.2	1.4	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1e	PF01406.14	gi|379003860|ref|YP_005259532.1|	-	0.0019	17.3	0.0	0.019	14.1	0.0	2.0	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
DZR	PF12773.2	gi|379003860|ref|YP_005259532.1|	-	0.067	13.0	4.9	0.13	12.1	2.9	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|379003860|ref|YP_005259532.1|	-	0.12	11.8	8.7	2.8	7.5	0.1	3.2	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379003860|ref|YP_005259532.1|	-	0.39	9.9	10.0	0.69	9.2	0.5	2.8	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379003860|ref|YP_005259532.1|	-	4.2	6.7	5.7	1.7	8.0	1.0	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
PaREP1	PF05942.6	gi|379003861|ref|YP_005259533.1|	-	4.8e-36	123.1	0.7	5.9e-36	122.8	0.5	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Gene66	PF02053.10	gi|379003861|ref|YP_005259533.1|	-	0.15	11.5	0.1	5.7	6.2	0.0	2.1	2	0	0	2	2	2	0	Gene	66	(IR5)	protein
HEPN	PF05168.9	gi|379003861|ref|YP_005259533.1|	-	0.7	9.8	4.5	14	5.5	3.2	2.1	1	1	0	1	1	1	0	HEPN	domain
Radical_SAM	PF04055.16	gi|379003862|ref|YP_005259534.1|	-	5e-27	95.1	0.0	8.7e-27	94.3	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|379003862|ref|YP_005259534.1|	-	3.4e-16	58.8	0.0	7.2e-16	57.8	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.15	gi|379003862|ref|YP_005259534.1|	-	0.0012	18.5	0.9	0.0027	17.4	0.6	1.5	1	0	0	1	1	1	1	TRAM	domain
DUF1450	PF07293.6	gi|379003862|ref|YP_005259534.1|	-	0.16	11.9	0.0	0.82	9.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1450)
DUF2710	PF10921.3	gi|379003863|ref|YP_005259535.1|	-	0.054	13.6	0.0	0.068	13.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2710)
Pterin_bind	PF00809.17	gi|379003864|ref|YP_005259536.1|	-	8.2e-41	139.6	0.0	3.8e-36	124.4	0.0	2.2	2	0	0	2	2	2	2	Pterin	binding	enzyme
CdhD	PF03599.11	gi|379003864|ref|YP_005259536.1|	-	0.0095	14.4	0.0	0.015	13.8	0.0	1.3	1	0	0	1	1	1	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
DUF2767	PF10965.3	gi|379003864|ref|YP_005259536.1|	-	0.12	12.1	0.0	0.33	10.8	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2767)
Abhydrolase_6	PF12697.2	gi|379003865|ref|YP_005259537.1|	-	5e-21	75.6	4.4	2.9e-10	40.3	2.1	2.0	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|379003865|ref|YP_005259537.1|	-	3.8e-17	62.3	0.0	4.6e-17	62.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|379003865|ref|YP_005259537.1|	-	7.4e-07	28.9	0.0	4.1e-05	23.2	0.0	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
DLH	PF01738.13	gi|379003865|ref|YP_005259537.1|	-	0.021	14.1	0.0	0.028	13.7	0.0	1.2	1	0	0	1	1	1	0	Dienelactone	hydrolase	family
Abhydrolase_4	PF08386.5	gi|379003865|ref|YP_005259537.1|	-	0.024	14.5	0.0	0.034	14.0	0.0	1.2	1	0	0	1	1	1	0	TAP-like	protein
THUMP	PF02926.12	gi|379003866|ref|YP_005259538.1|	-	2.1e-14	53.5	0.6	2.8e-14	53.2	0.4	1.2	1	0	0	1	1	1	1	THUMP	domain
gag-asp_proteas	PF13975.1	gi|379003866|ref|YP_005259538.1|	-	0.087	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	gag-polyprotein	putative	aspartyl	protease
Lactamase_B_3	PF13483.1	gi|379003867|ref|YP_005259539.1|	-	1.1e-22	80.4	0.0	1.4e-22	80.0	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|379003867|ref|YP_005259539.1|	-	1e-10	41.4	0.2	2.4e-08	33.7	0.1	2.1	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379003867|ref|YP_005259539.1|	-	8e-05	22.3	5.8	0.00014	21.5	4.0	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
AIRS_C	PF02769.17	gi|379003868|ref|YP_005259540.1|	-	2.8e-23	82.6	0.1	4.3e-23	82.0	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|379003868|ref|YP_005259540.1|	-	2.5e-16	59.6	0.1	2e-15	56.7	0.0	2.3	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
AMP-binding	PF00501.23	gi|379003869|ref|YP_005259541.1|	-	1.2e-49	168.9	0.1	8.3e-29	100.2	0.1	2.1	2	0	0	2	2	2	2	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379003869|ref|YP_005259541.1|	-	4e-09	37.2	1.0	2.3e-08	34.8	1.1	1.9	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
CbiA	PF01656.18	gi|379003870|ref|YP_005259542.1|	-	9.3e-14	51.2	0.0	1.1e-13	51.0	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.4	gi|379003870|ref|YP_005259542.1|	-	1e-12	47.7	0.0	1.6e-12	47.1	0.0	1.4	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
AAA_31	PF13614.1	gi|379003870|ref|YP_005259542.1|	-	1.1e-05	25.4	0.0	0.0031	17.4	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ArsA_ATPase	PF02374.10	gi|379003870|ref|YP_005259542.1|	-	0.00012	21.2	1.4	0.15	11.1	0.7	2.6	2	1	0	2	2	2	2	Anion-transporting	ATPase
AAA_19	PF13245.1	gi|379003870|ref|YP_005259542.1|	-	0.055	13.2	0.3	0.7	9.6	0.0	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
HypA	PF01155.14	gi|379003871|ref|YP_005259543.1|	-	1.5e-23	82.6	0.0	1.7e-23	82.4	0.0	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
Rubredoxin	PF00301.15	gi|379003871|ref|YP_005259543.1|	-	0.0011	18.8	2.3	0.03	14.1	0.1	2.2	2	0	0	2	2	2	1	Rubredoxin
Zn-ribbon_8	PF09723.5	gi|379003871|ref|YP_005259543.1|	-	0.002	18.0	3.9	0.54	10.2	0.0	2.3	2	0	0	2	2	2	2	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379003871|ref|YP_005259543.1|	-	0.0035	16.6	0.2	0.86	8.9	0.1	2.2	2	0	0	2	2	2	1	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|379003871|ref|YP_005259543.1|	-	0.0054	15.8	0.8	0.17	11.1	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|379003871|ref|YP_005259543.1|	-	0.0086	15.8	1.3	2	8.2	0.0	2.3	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379003871|ref|YP_005259543.1|	-	0.013	15.0	1.2	0.61	9.6	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|379003871|ref|YP_005259543.1|	-	0.024	14.6	5.5	2.2	8.3	1.6	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
RNA_POL_M_15KD	PF02150.11	gi|379003871|ref|YP_005259543.1|	-	0.024	14.3	2.5	0.59	9.8	0.1	2.3	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
TFIIS_C	PF01096.13	gi|379003871|ref|YP_005259543.1|	-	0.027	14.0	1.9	1.6	8.3	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-H2C2_2	PF13465.1	gi|379003871|ref|YP_005259543.1|	-	0.044	14.0	2.4	3.6	8.0	0.1	2.3	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF35_N	PF12172.3	gi|379003871|ref|YP_005259543.1|	-	0.078	12.9	1.7	10	6.1	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Zn_Tnp_IS1	PF03811.8	gi|379003871|ref|YP_005259543.1|	-	0.081	12.4	4.9	3.6	7.1	0.6	2.3	2	0	0	2	2	2	0	InsA	N-terminal	domain
DUF3797	PF12677.2	gi|379003871|ref|YP_005259543.1|	-	0.11	12.1	0.1	0.63	9.6	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3797)
zf-IS66	PF13005.2	gi|379003871|ref|YP_005259543.1|	-	0.13	12.2	4.3	1.6	8.7	0.6	2.7	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_5	PF13719.1	gi|379003871|ref|YP_005259543.1|	-	0.14	11.7	1.2	6	6.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2082	PF09855.4	gi|379003871|ref|YP_005259543.1|	-	0.15	11.9	0.7	1.6	8.6	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zinc_ribbon_4	PF13717.1	gi|379003871|ref|YP_005259543.1|	-	0.15	11.7	1.0	7.1	6.4	0.2	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Nudix_N_2	PF14803.1	gi|379003871|ref|YP_005259543.1|	-	0.22	11.2	2.6	4.6	7.0	0.4	2.4	2	0	0	2	2	2	0	Nudix	N-terminal
Lar_restr_allev	PF14354.1	gi|379003871|ref|YP_005259543.1|	-	0.23	11.8	1.6	1.5	9.2	1.1	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
OrfB_Zn_ribbon	PF07282.6	gi|379003871|ref|YP_005259543.1|	-	0.32	10.6	2.6	11	5.8	0.1	2.7	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|379003871|ref|YP_005259543.1|	-	0.43	10.3	5.9	1.1	9.0	0.4	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-HIT	PF04438.11	gi|379003871|ref|YP_005259543.1|	-	0.68	9.6	5.6	8.3	6.1	0.8	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
NikR_C	PF08753.6	gi|379003872|ref|YP_005259544.1|	-	2.7e-21	75.2	0.2	4.2e-21	74.6	0.1	1.3	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
EXOSC1	PF10447.4	gi|379003872|ref|YP_005259544.1|	-	0.017	15.1	0.2	0.021	14.7	0.1	1.2	1	0	0	1	1	1	0	Exosome	component	EXOSC1/CSL4
DUF2042	PF09743.4	gi|379003872|ref|YP_005259544.1|	-	0.028	13.7	0.1	0.084	12.1	0.0	1.7	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2042)
YqgF	PF14639.1	gi|379003872|ref|YP_005259544.1|	-	0.13	11.7	0.1	0.19	11.2	0.1	1.2	1	0	0	1	1	1	0	Holliday-junction	resolvase-like	of	SPT6
HycI	PF01750.13	gi|379003874|ref|YP_005259546.1|	-	0.009	15.5	0.0	0.016	14.7	0.0	1.4	1	1	0	1	1	1	1	Hydrogenase	maturation	protease
HTH_Crp_2	PF13545.1	gi|379003875|ref|YP_005259547.1|	-	0.036	13.8	0.1	0.14	11.9	0.0	2.0	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HemN_C	PF06969.11	gi|379003875|ref|YP_005259547.1|	-	0.036	14.1	0.0	0.11	12.5	0.0	1.9	2	0	0	2	2	2	0	HemN	C-terminal	domain
Rrf2	PF02082.15	gi|379003875|ref|YP_005259547.1|	-	0.045	13.8	0.0	2.8	8.0	0.0	2.2	1	1	1	2	2	2	0	Transcriptional	regulator
HTH_24	PF13412.1	gi|379003875|ref|YP_005259547.1|	-	0.059	12.7	0.0	0.12	11.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2250	PF10007.4	gi|379003875|ref|YP_005259547.1|	-	0.12	12.2	0.0	0.27	11.1	0.0	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
NiFe_hyd_SSU_C	PF14720.1	gi|379003876|ref|YP_005259548.1|	-	1.1e-21	76.6	1.1	1.9e-21	75.8	0.7	1.4	1	0	0	1	1	1	1	NiFe/NiFeSe	hydrogenase	small	subunit	C-terminal
Oxidored_q6	PF01058.17	gi|379003876|ref|YP_005259548.1|	-	8.3e-17	61.0	0.0	3.1e-16	59.1	0.0	2.0	1	1	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
TAT_signal	PF10518.4	gi|379003876|ref|YP_005259548.1|	-	0.022	14.7	0.2	0.022	14.7	0.1	4.0	4	0	0	4	4	4	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
FLILHELTA	PF10306.4	gi|379003877|ref|YP_005259549.1|	-	2.6	8.1	9.4	0.44	10.6	2.6	2.5	2	1	0	2	2	2	0	Hypothetical	protein	FLILHELTA
Fer4_17	PF13534.1	gi|379003878|ref|YP_005259550.1|	-	6.8e-11	42.3	4.3	1.6e-10	41.1	3.0	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003878|ref|YP_005259550.1|	-	5.8e-10	39.0	4.9	1.7e-09	37.5	3.4	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379003878|ref|YP_005259550.1|	-	4e-09	36.1	1.1	0.0019	17.9	0.0	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003878|ref|YP_005259550.1|	-	7.6e-09	35.8	4.7	2.2e-08	34.3	3.3	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379003878|ref|YP_005259550.1|	-	3.1e-06	27.5	3.8	0.0026	18.1	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003878|ref|YP_005259550.1|	-	4.4e-06	26.0	12.7	0.0088	15.6	1.9	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379003878|ref|YP_005259550.1|	-	5.6e-06	26.5	8.0	2.8e-05	24.2	5.6	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379003878|ref|YP_005259550.1|	-	7.8e-05	22.3	11.9	0.0053	16.5	1.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379003878|ref|YP_005259550.1|	-	8.1e-05	22.3	11.1	0.026	14.4	1.5	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003878|ref|YP_005259550.1|	-	8.9e-05	22.2	5.3	0.079	12.8	0.5	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003878|ref|YP_005259550.1|	-	0.00081	19.5	14.5	0.12	12.7	2.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
CCG	PF02754.11	gi|379003878|ref|YP_005259550.1|	-	0.016	15.1	0.0	7.6	6.6	0.0	3.4	2	1	0	2	2	2	0	Cysteine-rich	domain
Fer4_15	PF13459.1	gi|379003878|ref|YP_005259550.1|	-	0.018	15.5	4.6	0.67	10.5	0.4	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|379003878|ref|YP_005259550.1|	-	0.042	14.5	13.1	1.9	9.2	10.0	2.5	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_20	PF14691.1	gi|379003878|ref|YP_005259550.1|	-	0.046	13.3	0.8	0.56	9.8	0.0	2.3	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_3	PF12798.2	gi|379003878|ref|YP_005259550.1|	-	1.4	9.6	21.4	0.78	10.4	3.0	2.9	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379003878|ref|YP_005259550.1|	-	5.3	7.5	11.9	8.8	6.8	1.4	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
NiFeSe_Hases	PF00374.14	gi|379003879|ref|YP_005259551.1|	-	1.4e-41	142.8	0.1	6.5e-23	81.2	0.1	3.1	1	1	0	2	2	2	2	Nickel-dependent	hydrogenase
HycI	PF01750.13	gi|379003880|ref|YP_005259552.1|	-	4.7e-06	26.1	0.0	1.2e-05	24.8	0.0	1.6	1	1	1	2	2	2	1	Hydrogenase	maturation	protease
HAUS2	PF15003.1	gi|379003881|ref|YP_005259553.1|	-	0.0036	16.4	0.1	0.0039	16.2	0.0	1.1	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	2
BAR_3_WASP_bdg	PF10456.4	gi|379003881|ref|YP_005259553.1|	-	0.059	12.6	0.0	0.078	12.2	0.0	1.3	1	1	0	1	1	1	0	WASP-binding	domain	of	Sorting	nexin	protein
Ist1	PF03398.9	gi|379003881|ref|YP_005259553.1|	-	0.095	12.1	0.1	0.15	11.4	0.1	1.4	1	1	0	1	1	1	0	Regulator	of	Vps4	activity	in	the	MVB	pathway
DUF488	PF04343.8	gi|379003881|ref|YP_005259553.1|	-	0.12	12.7	0.1	0.24	11.7	0.0	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function,	DUF488
Ribosomal_L29	PF00831.18	gi|379003881|ref|YP_005259553.1|	-	0.6	9.8	4.0	12	5.7	0.1	2.6	2	1	0	2	2	2	0	Ribosomal	L29	protein
Pigment_DH	PF06324.6	gi|379003882|ref|YP_005259554.1|	-	0.11	11.8	0.8	0.24	10.6	0.6	1.6	1	0	0	1	1	1	0	Pigment-dispersing	hormone	(PDH)
ABC_tran	PF00005.22	gi|379003883|ref|YP_005259555.1|	-	1.1e-18	67.7	0.0	2.4e-18	66.7	0.0	1.5	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003883|ref|YP_005259555.1|	-	9.2e-14	52.0	0.1	4e-06	27.0	0.1	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379003883|ref|YP_005259555.1|	-	4.8e-06	27.0	0.0	6.3e-06	26.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379003883|ref|YP_005259555.1|	-	8.1e-05	21.9	0.2	0.0018	17.5	0.0	2.1	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379003883|ref|YP_005259555.1|	-	0.00016	21.1	0.0	0.00032	20.1	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|379003883|ref|YP_005259555.1|	-	0.00016	21.8	0.0	0.00089	19.4	0.0	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|379003883|ref|YP_005259555.1|	-	0.0013	17.9	0.0	0.0086	15.2	0.0	2.0	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_19	PF13245.1	gi|379003883|ref|YP_005259555.1|	-	0.0018	17.9	0.7	0.0047	16.6	0.1	1.9	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379003883|ref|YP_005259555.1|	-	0.0032	17.4	0.2	0.0066	16.4	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|379003883|ref|YP_005259555.1|	-	0.0065	16.1	0.1	0.022	14.3	0.0	1.8	2	0	0	2	2	2	1	NACHT	domain
T2SE	PF00437.15	gi|379003883|ref|YP_005259555.1|	-	0.013	14.4	0.0	0.037	12.9	0.0	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_22	PF13401.1	gi|379003883|ref|YP_005259555.1|	-	0.014	15.5	0.0	0.055	13.6	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_15	PF13175.1	gi|379003883|ref|YP_005259555.1|	-	0.035	13.1	0.0	0.046	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
NTPase_1	PF03266.10	gi|379003883|ref|YP_005259555.1|	-	0.036	13.7	0.0	1.3	8.6	0.0	2.1	2	0	0	2	2	2	0	NTPase
AAA_30	PF13604.1	gi|379003883|ref|YP_005259555.1|	-	0.042	13.4	0.0	0.06	12.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|379003883|ref|YP_005259555.1|	-	0.08	12.3	0.4	0.94	8.8	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|379003883|ref|YP_005259555.1|	-	0.11	12.1	0.0	0.53	10.0	0.0	2.0	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
CbtB	PF09489.5	gi|379003884|ref|YP_005259556.1|	-	7.1	6.6	6.6	3.3	7.6	0.5	2.9	1	1	1	2	2	2	0	Probable	cobalt	transporter	subunit	(CbtB)
PDGLE	PF13190.1	gi|379003885|ref|YP_005259557.1|	-	8.9e-09	34.9	0.3	1.2e-08	34.5	0.2	1.1	1	0	0	1	1	1	1	PDGLE	domain
ABC2_membrane_4	PF12730.2	gi|379003885|ref|YP_005259557.1|	-	0.041	13.0	1.4	0.061	12.4	1.0	1.2	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
DUF3309	PF11752.3	gi|379003885|ref|YP_005259557.1|	-	2	8.2	9.5	2	8.2	1.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3309)
CbiM	PF01891.11	gi|379003886|ref|YP_005259558.1|	-	2.4e-58	197.1	18.1	3e-58	196.8	12.6	1.0	1	0	0	1	1	1	1	Cobalt	uptake	substrate-specific	transmembrane	region
Asp_protease_2	PF13650.1	gi|379003887|ref|YP_005259559.1|	-	4.3e-08	33.5	0.2	8.1e-08	32.6	0.1	1.4	1	1	1	2	2	2	1	Aspartyl	protease
Asp_protease	PF09668.5	gi|379003887|ref|YP_005259559.1|	-	5.6e-05	22.7	0.1	8.5e-05	22.1	0.0	1.2	1	0	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.1	gi|379003887|ref|YP_005259559.1|	-	0.00016	21.3	0.0	0.00032	20.4	0.0	1.6	1	1	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
RVP	PF00077.15	gi|379003887|ref|YP_005259559.1|	-	0.0015	18.4	0.0	0.0027	17.5	0.0	1.4	1	1	0	1	1	1	1	Retroviral	aspartyl	protease
PIN	PF01850.16	gi|379003888|ref|YP_005259560.1|	-	0.0026	18.0	0.0	0.0035	17.6	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
HupF_HypC	PF01455.13	gi|379003889|ref|YP_005259561.1|	-	4.8e-13	48.8	0.4	4.8e-13	48.8	0.3	1.6	2	0	0	2	2	2	1	HupF/HypC	family
HypD	PF01924.11	gi|379003890|ref|YP_005259562.1|	-	1.5e-122	408.7	0.0	1.8e-122	408.5	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
PrpR_N	PF06506.6	gi|379003890|ref|YP_005259562.1|	-	0.028	13.8	0.2	0.82	9.0	0.0	2.6	3	0	0	3	3	3	0	Propionate	catabolism	activator
ABC_tran	PF00005.22	gi|379003891|ref|YP_005259563.1|	-	7.4e-28	97.5	0.0	9.8e-28	97.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379003891|ref|YP_005259563.1|	-	1.4e-16	61.3	0.5	1.1e-07	32.1	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379003891|ref|YP_005259563.1|	-	1.8e-09	37.1	0.2	0.00077	18.7	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379003891|ref|YP_005259563.1|	-	4.7e-06	27.0	0.0	7.3e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379003891|ref|YP_005259563.1|	-	9.4e-06	25.2	0.4	9.4e-06	25.2	0.3	2.0	3	0	0	3	3	1	1	Part	of	AAA	domain
AAA_29	PF13555.1	gi|379003891|ref|YP_005259563.1|	-	2.2e-05	23.8	0.0	4e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|379003891|ref|YP_005259563.1|	-	4.2e-05	23.3	0.1	5.8e-05	22.9	0.1	1.5	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_22	PF13401.1	gi|379003891|ref|YP_005259563.1|	-	5.6e-05	23.2	0.7	0.00029	20.9	0.5	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|379003891|ref|YP_005259563.1|	-	0.00026	20.4	0.0	0.00057	19.3	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|379003891|ref|YP_005259563.1|	-	0.00047	19.3	0.0	0.59	9.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA	PF00004.24	gi|379003891|ref|YP_005259563.1|	-	0.00086	19.5	0.1	0.009	16.2	0.0	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|379003891|ref|YP_005259563.1|	-	0.0019	18.2	1.1	0.0059	16.6	0.8	1.8	1	1	0	1	1	1	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|379003891|ref|YP_005259563.1|	-	0.0024	17.7	0.1	0.047	13.5	0.0	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
KaiC	PF06745.8	gi|379003891|ref|YP_005259563.1|	-	0.0025	16.9	0.0	0.0044	16.1	0.0	1.3	1	0	0	1	1	1	1	KaiC
DUF3584	PF12128.3	gi|379003891|ref|YP_005259563.1|	-	0.0033	14.8	0.1	0.0044	14.4	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
AAA_14	PF13173.1	gi|379003891|ref|YP_005259563.1|	-	0.006	16.4	0.0	0.014	15.2	0.0	1.6	1	1	0	2	2	2	1	AAA	domain
AAA_28	PF13521.1	gi|379003891|ref|YP_005259563.1|	-	0.0064	16.4	0.0	0.01	15.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.4	gi|379003891|ref|YP_005259563.1|	-	0.0075	14.9	0.1	0.048	12.2	0.0	1.9	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_10	PF12846.2	gi|379003891|ref|YP_005259563.1|	-	0.0076	15.7	0.0	0.01	15.2	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
NACHT	PF05729.7	gi|379003891|ref|YP_005259563.1|	-	0.0079	15.8	0.1	0.014	15.0	0.1	1.4	1	0	0	1	1	1	1	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|379003891|ref|YP_005259563.1|	-	0.013	14.9	0.0	0.025	14.0	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_13	PF13166.1	gi|379003891|ref|YP_005259563.1|	-	0.016	13.6	0.0	0.024	13.1	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379003891|ref|YP_005259563.1|	-	0.019	14.6	0.3	0.05	13.3	0.1	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|379003891|ref|YP_005259563.1|	-	0.021	14.7	0.4	0.083	12.7	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|379003891|ref|YP_005259563.1|	-	0.021	15.6	0.2	0.051	14.3	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|379003891|ref|YP_005259563.1|	-	0.023	14.1	0.2	0.039	13.3	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|379003891|ref|YP_005259563.1|	-	0.024	14.3	0.2	0.051	13.2	0.2	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|379003891|ref|YP_005259563.1|	-	0.05	13.3	0.4	0.15	11.7	0.1	1.8	2	0	0	2	2	2	0	NTPase
AAA_30	PF13604.1	gi|379003891|ref|YP_005259563.1|	-	0.063	12.8	0.0	0.098	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|379003891|ref|YP_005259563.1|	-	0.12	12.0	0.1	0.3	10.7	0.0	1.6	2	0	0	2	2	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
RNA12	PF10443.4	gi|379003891|ref|YP_005259563.1|	-	0.13	10.7	0.0	0.19	10.2	0.0	1.2	1	0	0	1	1	1	0	RNA12	protein
RecA	PF00154.16	gi|379003891|ref|YP_005259563.1|	-	0.14	11.1	0.0	0.9	8.5	0.0	1.9	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
DUF258	PF03193.11	gi|379003891|ref|YP_005259563.1|	-	0.15	11.2	0.0	0.24	10.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ATP_bind_1	PF03029.12	gi|379003891|ref|YP_005259563.1|	-	0.18	11.3	0.6	0.33	10.4	0.1	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
FecCD	PF01032.13	gi|379003892|ref|YP_005259564.1|	-	3.3e-74	249.5	40.8	4.1e-74	249.2	28.3	1.0	1	0	0	1	1	1	1	FecCD	transport	family
Peripla_BP_2	PF01497.13	gi|379003893|ref|YP_005259565.1|	-	2.5e-34	118.4	0.0	3.5e-34	117.9	0.0	1.2	1	0	0	1	1	1	1	Periplasmic	binding	protein
DUF2201	PF09967.4	gi|379003893|ref|YP_005259565.1|	-	0.064	13.2	0.4	0.17	11.9	0.2	1.7	1	1	0	1	1	1	0	VWA-like	domain	(DUF2201)
FmdE	PF02663.9	gi|379003894|ref|YP_005259566.1|	-	2.2e-21	76.1	0.0	1.6e-20	73.3	0.0	2.2	3	0	0	3	3	3	1	FmdE,	Molybdenum	formylmethanofuran	dehydrogenase	operon
DUF364	PF04016.7	gi|379003895|ref|YP_005259567.1|	-	1.1e-33	115.5	0.0	1.7e-33	114.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF364)
DUF4213	PF13938.1	gi|379003895|ref|YP_005259567.1|	-	4.2e-17	62.0	0.0	7.6e-17	61.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4213)
YbhQ	PF11076.3	gi|379003895|ref|YP_005259567.1|	-	0.05	13.2	0.2	0.091	12.3	0.0	1.5	2	0	0	2	2	2	0	Putative	inner	membrane	protein	YbhQ
Sua5_yciO_yrdC	PF01300.13	gi|379003896|ref|YP_005259568.1|	-	6.1e-47	159.1	0.0	9.5e-47	158.5	0.0	1.3	1	0	0	1	1	1	1	Telomere	recombination
zf-HYPF	PF07503.7	gi|379003896|ref|YP_005259568.1|	-	3.1e-24	84.0	6.6	1.3e-12	46.8	0.1	2.4	2	0	0	2	2	2	2	HypF	finger
Acylphosphatase	PF00708.13	gi|379003896|ref|YP_005259568.1|	-	1.2e-18	66.9	0.1	2.3e-18	66.0	0.1	1.5	1	0	0	1	1	1	1	Acylphosphatase
Peptidase_M22	PF00814.20	gi|379003896|ref|YP_005259568.1|	-	0.0005	19.6	0.1	0.63	9.4	0.0	2.3	2	0	0	2	2	2	2	Glycoprotease	family
zf-C4_ClpX	PF06689.8	gi|379003896|ref|YP_005259568.1|	-	0.78	9.2	2.9	21	4.7	0.3	2.5	2	0	0	2	2	2	0	ClpX	C4-type	zinc	finger
PhnA_Zn_Ribbon	PF08274.7	gi|379003896|ref|YP_005259568.1|	-	3	7.6	7.7	1.9	8.3	0.5	2.8	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
RBFA	PF02033.13	gi|379003897|ref|YP_005259569.1|	-	0.017	15.1	0.0	0.033	14.2	0.0	1.5	1	0	0	1	1	1	0	Ribosome-binding	factor	A
DUF3323	PF11796.3	gi|379003897|ref|YP_005259569.1|	-	0.026	13.8	0.1	0.048	12.9	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	N-terminus	(DUF3323)
CN_hydrolase	PF00795.17	gi|379003898|ref|YP_005259570.1|	-	7.5e-12	44.9	0.0	1.1e-11	44.4	0.0	1.3	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
Homez	PF11569.3	gi|379003898|ref|YP_005259570.1|	-	0.031	13.3	0.0	0.056	12.5	0.0	1.3	1	0	0	1	1	1	0	Homeodomain	leucine-zipper	encoding,	Homez
HTH_45	PF14947.1	gi|379003900|ref|YP_005259572.1|	-	1.9e-11	43.6	0.5	2.2e-11	43.4	0.3	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
Ftsk_gamma	PF09397.5	gi|379003900|ref|YP_005259572.1|	-	0.0072	16.0	0.1	0.013	15.1	0.1	1.4	1	0	0	1	1	1	1	Ftsk	gamma	domain
TrmB	PF01978.14	gi|379003900|ref|YP_005259572.1|	-	0.062	13.0	0.2	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HHH_8	PF14716.1	gi|379003900|ref|YP_005259572.1|	-	0.11	12.7	0.3	0.18	12.0	0.2	1.4	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
Dala_Dala_lig_N	PF01820.16	gi|379003902|ref|YP_005259574.1|	-	0.014	15.7	0.0	0.07	13.4	0.0	2.0	2	0	0	2	2	2	0	D-ala	D-ala	ligase	N-terminus
NERD	PF08378.6	gi|379003906|ref|YP_005259578.1|	-	0.011	15.9	0.3	0.011	15.9	0.2	2.6	1	1	1	2	2	2	0	Nuclease-related	domain
Filament	PF00038.16	gi|379003906|ref|YP_005259578.1|	-	0.027	13.9	5.8	0.036	13.5	4.0	1.2	1	0	0	1	1	1	0	Intermediate	filament	protein
DUF4143	PF13635.1	gi|379003906|ref|YP_005259578.1|	-	0.13	12.4	0.3	0.26	11.4	0.2	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
AAA_21	PF13304.1	gi|379003906|ref|YP_005259578.1|	-	0.26	11.2	0.8	0.26	11.2	0.6	1.1	1	0	0	1	1	1	0	AAA	domain
Na_K-ATPase	PF00287.13	gi|379003906|ref|YP_005259578.1|	-	0.42	9.3	2.9	1.9	7.1	0.4	2.2	1	1	1	2	2	2	0	Sodium	/	potassium	ATPase	beta	chain
DDRGK	PF09756.4	gi|379003906|ref|YP_005259578.1|	-	2.4	7.5	14.5	3.9	6.8	10.0	1.2	1	0	0	1	1	1	0	DDRGK	domain
Muted	PF14942.1	gi|379003906|ref|YP_005259578.1|	-	6.5	6.6	11.7	4.6	7.1	5.7	2.1	1	1	1	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
UPF0066	PF01980.11	gi|379003907|ref|YP_005259579.1|	-	1.2e-32	112.4	0.0	1.5e-32	112.0	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
TrkA_C	PF02080.16	gi|379003908|ref|YP_005259580.1|	-	1.4e-09	37.3	0.1	4.2e-09	35.8	0.0	1.8	2	0	0	2	2	2	1	TrkA-C	domain
DUF4651	PF15513.1	gi|379003909|ref|YP_005259581.1|	-	2.4	7.6	3.9	1.6	8.2	0.3	2.5	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4651)
HTH_20	PF12840.2	gi|379003910|ref|YP_005259582.1|	-	0.05	13.4	0.0	0.1	12.4	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|379003910|ref|YP_005259582.1|	-	0.13	11.8	0.0	0.84	9.2	0.0	2.1	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HTH_24	PF13412.1	gi|379003910|ref|YP_005259582.1|	-	0.14	11.5	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RPEL	PF02755.10	gi|379003911|ref|YP_005259583.1|	-	0.16	11.3	0.2	0.42	10.0	0.0	1.8	2	0	0	2	2	2	0	RPEL	repeat
HEPN	PF05168.9	gi|379003912|ref|YP_005259584.1|	-	4.5e-22	78.1	2.2	6.2e-22	77.7	1.5	1.2	1	0	0	1	1	1	1	HEPN	domain
DUF3683	PF12447.3	gi|379003912|ref|YP_005259584.1|	-	0.12	12.1	0.2	0.18	11.6	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3683)
DUF4398	PF14346.1	gi|379003912|ref|YP_005259584.1|	-	1.1	9.3	5.5	1	9.4	0.4	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
NTP_transf_2	PF01909.18	gi|379003913|ref|YP_005259585.1|	-	4.4e-10	39.7	0.0	5.1e-10	39.5	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
AP_endonuc_2	PF01261.19	gi|379003913|ref|YP_005259585.1|	-	0.05	12.8	0.0	0.057	12.7	0.0	1.1	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Glyco_trans_1_4	PF13692.1	gi|379003913|ref|YP_005259585.1|	-	0.07	13.2	0.1	0.63	10.1	0.0	2.0	1	1	1	2	2	2	0	Glycosyl	transferases	group	1
Gp_dh_C	PF02800.15	gi|379003913|ref|YP_005259585.1|	-	0.14	11.5	0.0	0.18	11.2	0.0	1.1	1	0	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
PaREP1	PF05942.6	gi|379003914|ref|YP_005259586.1|	-	1.6e-26	92.4	1.1	2.1e-26	92.0	0.7	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
PIN	PF01850.16	gi|379003916|ref|YP_005259588.1|	-	2.4e-11	44.0	0.3	2.8e-11	43.8	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|379003916|ref|YP_005259588.1|	-	0.006	17.2	0.8	0.0074	16.9	0.5	1.3	1	1	0	1	1	1	1	PIN	domain
RadC	PF04002.10	gi|379003916|ref|YP_005259588.1|	-	0.094	12.4	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	RadC-like	JAB	domain
CcdA	PF07362.7	gi|379003917|ref|YP_005259589.1|	-	0.0022	17.8	1.4	0.067	13.0	0.1	2.0	1	1	1	2	2	2	1	Post-segregation	antitoxin	CcdA
KaiA	PF07688.7	gi|379003917|ref|YP_005259589.1|	-	0.0087	15.3	0.1	0.0094	15.2	0.1	1.0	1	0	0	1	1	1	1	KaiA	domain
RHH_1	PF01402.16	gi|379003917|ref|YP_005259589.1|	-	0.025	14.4	4.0	0.41	10.6	0.1	2.8	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
CCDC50_N	PF15295.1	gi|379003917|ref|YP_005259589.1|	-	0.046	13.6	4.5	0.069	13.0	3.1	1.3	1	1	0	1	1	1	0	Coiled-coil	domain-containing	protein	50	N-terminus
DUF2267	PF10025.4	gi|379003917|ref|YP_005259589.1|	-	0.075	13.1	0.2	0.11	12.5	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2267)
BCIP	PF13862.1	gi|379003917|ref|YP_005259589.1|	-	0.082	12.4	0.1	0.086	12.3	0.1	1.1	1	0	0	1	1	1	0	p21-C-terminal	region-binding	protein
YueH	PF14166.1	gi|379003917|ref|YP_005259589.1|	-	0.11	12.3	0.3	0.16	11.7	0.2	1.4	1	1	0	1	1	1	0	YueH-like	protein
DUF2891	PF11199.3	gi|379003917|ref|YP_005259589.1|	-	0.15	10.6	0.4	0.17	10.4	0.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2891)
Ribosomal_L12	PF00542.14	gi|379003917|ref|YP_005259589.1|	-	0.24	11.4	3.4	0.31	11.0	2.4	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L7/L12	C-terminal	domain
Ribonuc_L-PSP	PF01042.16	gi|379003920|ref|YP_005259592.1|	-	2.2e-46	156.5	0.4	2.4e-46	156.4	0.3	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
DUF3852	PF12963.2	gi|379003920|ref|YP_005259592.1|	-	0.016	15.2	0.2	0.021	14.8	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3852)
Isochorismatase	PF00857.15	gi|379003921|ref|YP_005259593.1|	-	6.4e-46	156.4	0.0	7.2e-46	156.2	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
SPASM	PF13186.1	gi|379003922|ref|YP_005259594.1|	-	2.6e-12	46.8	0.8	4.4e-12	46.1	0.3	1.5	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Radical_SAM	PF04055.16	gi|379003922|ref|YP_005259594.1|	-	0.069	13.3	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Radical	SAM	superfamily
zf-A20	PF01754.11	gi|379003922|ref|YP_005259594.1|	-	1.9	8.1	0.0	1.9	8.1	0.0	2.7	3	0	0	3	3	3	0	A20-like	zinc	finger
Cons_hypoth698	PF03601.9	gi|379003925|ref|YP_005259597.1|	-	4.4e-26	91.2	15.2	4.4e-26	91.2	10.6	2.3	2	1	1	3	3	3	1	Conserved	hypothetical	protein	698
COG6	PF06419.6	gi|379003926|ref|YP_005259598.1|	-	0.012	13.8	0.2	0.012	13.8	0.2	1.0	1	0	0	1	1	1	0	Conserved	oligomeric	complex	COG6
Cytochrome_cB	PF11783.3	gi|379003926|ref|YP_005259598.1|	-	0.079	12.5	0.0	0.079	12.5	0.0	1.0	1	0	0	1	1	1	0	Cytochrome	c	bacterial
DsrC	PF04358.8	gi|379003927|ref|YP_005259599.1|	-	2.2e-23	82.6	0.3	2.6e-23	82.3	0.2	1.0	1	0	0	1	1	1	1	DsrC	like	protein
UPF0020	PF01170.13	gi|379003930|ref|YP_005259602.1|	-	4e-24	85.1	0.0	5.5e-24	84.7	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
THUMP	PF02926.12	gi|379003930|ref|YP_005259602.1|	-	2.2e-10	40.5	0.1	3.5e-10	39.9	0.1	1.3	1	0	0	1	1	1	1	THUMP	domain
Methyltransf_26	PF13659.1	gi|379003930|ref|YP_005259602.1|	-	4.5e-10	39.5	0.1	8.3e-10	38.7	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379003930|ref|YP_005259602.1|	-	4.7e-09	35.8	0.0	8.3e-09	35.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_31	PF13847.1	gi|379003930|ref|YP_005259602.1|	-	5.7e-06	25.9	0.0	8.3e-06	25.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|379003930|ref|YP_005259602.1|	-	0.00054	19.0	0.0	0.00095	18.2	0.0	1.4	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_18	PF12847.2	gi|379003930|ref|YP_005259602.1|	-	0.0013	19.2	0.0	0.0031	18.0	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379003930|ref|YP_005259602.1|	-	0.006	16.9	0.0	0.014	15.7	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379003930|ref|YP_005259602.1|	-	0.008	16.6	0.0	0.017	15.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379003930|ref|YP_005259602.1|	-	0.0087	15.7	0.0	0.029	14.0	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|379003930|ref|YP_005259602.1|	-	0.011	14.9	0.0	0.016	14.3	0.0	1.3	1	0	0	1	1	1	0	O-methyltransferase
CMAS	PF02353.15	gi|379003930|ref|YP_005259602.1|	-	0.032	13.2	0.0	0.054	12.5	0.0	1.3	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Methyltransf_15	PF09445.5	gi|379003930|ref|YP_005259602.1|	-	0.038	13.5	0.0	0.056	13.0	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
TauE	PF01925.14	gi|379003931|ref|YP_005259603.1|	-	1.4e-37	129.4	31.1	1.7e-37	129.1	21.6	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF1634	PF07843.6	gi|379003932|ref|YP_005259604.1|	-	6e-23	80.4	8.3	6.9e-23	80.2	5.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
Bundlin	PF05307.6	gi|379003932|ref|YP_005259604.1|	-	0.0042	16.9	2.0	0.011	15.6	0.1	2.2	1	1	1	2	2	2	1	Bundlin
DUF1430	PF07242.6	gi|379003932|ref|YP_005259604.1|	-	0.9	9.6	5.7	0.84	9.7	3.3	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1430)
Sugar_tr	PF00083.19	gi|379003933|ref|YP_005259605.1|	-	1.2e-05	24.0	0.4	1.3e-05	23.9	0.3	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
Glycoprotein_B	PF00606.13	gi|379003933|ref|YP_005259605.1|	-	0.07	11.1	1.0	0.071	11.1	0.7	1.0	1	0	0	1	1	1	0	Herpesvirus	Glycoprotein	B
POR_N	PF01855.14	gi|379003934|ref|YP_005259606.1|	-	3.8e-61	206.5	0.6	5.7e-61	205.9	0.4	1.2	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|379003934|ref|YP_005259606.1|	-	2e-31	109.2	4.0	1.8e-17	63.8	0.1	3.0	2	1	1	3	3	3	2	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_N	PF02776.13	gi|379003934|ref|YP_005259606.1|	-	2.5e-06	27.1	3.6	8.2e-06	25.4	1.7	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|379003935|ref|YP_005259607.1|	-	5.8e-36	123.3	0.5	8.7e-36	122.7	0.3	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|379003935|ref|YP_005259607.1|	-	5.4e-24	83.8	0.0	9.6e-24	83.0	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
Cas_csx3	PF09620.5	gi|379003935|ref|YP_005259607.1|	-	0.02	14.6	0.4	0.15	11.8	0.0	2.2	2	0	0	2	2	2	0	CRISPR-associated	protein	(Cas_csx3)
PS_pyruv_trans	PF04230.8	gi|379003935|ref|YP_005259607.1|	-	0.078	12.6	0.1	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Polysaccharide	pyruvyl	transferase
Exosortase_EpsH	PF09721.5	gi|379003936|ref|YP_005259608.1|	-	0.91	8.6	13.4	1	8.4	9.3	1.0	1	0	0	1	1	1	0	Transmembrane	exosortase	(Exosortase_EpsH)
SdpI	PF13630.1	gi|379003936|ref|YP_005259608.1|	-	9.1	6.0	13.3	5.7e+02	0.3	9.2	2.1	1	1	0	1	1	1	0	SdpI/YhfL	protein	family
TauE	PF01925.14	gi|379003937|ref|YP_005259609.1|	-	2.4e-31	109.0	42.4	2.8e-31	108.8	29.4	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Pterin_4a	PF01329.14	gi|379003938|ref|YP_005259610.1|	-	5.7e-20	70.8	0.1	6.1e-20	70.7	0.1	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
DUF2336	PF10098.4	gi|379003938|ref|YP_005259610.1|	-	0.036	13.3	0.1	0.04	13.1	0.0	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2336)
NAD_binding_10	PF13460.1	gi|379003939|ref|YP_005259611.1|	-	0.0035	17.3	0.5	0.23	11.4	0.0	2.5	2	0	0	2	2	2	2	NADH(P)-binding
DrsE_2	PF13686.1	gi|379003941|ref|YP_005259613.1|	-	5.9e-29	100.7	0.5	3.1e-28	98.4	0.3	1.8	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|379003941|ref|YP_005259613.1|	-	2.2e-10	40.6	0.0	9.3e-10	38.6	0.0	1.8	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DUF1499	PF07386.6	gi|379003941|ref|YP_005259613.1|	-	0.087	12.9	0.0	0.12	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1499)
Tetrabrachion	PF11401.3	gi|379003942|ref|YP_005259614.1|	-	0.14	11.9	0.0	0.26	11.1	0.0	1.3	1	0	0	1	1	1	0	Tetrabrachion
ATP-sulfurylase	PF01747.12	gi|379003943|ref|YP_005259615.1|	-	6.9e-77	257.5	0.0	9.1e-77	257.1	0.0	1.1	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.1	gi|379003943|ref|YP_005259615.1|	-	1.2e-39	135.3	0.0	5.6e-39	133.1	0.0	1.9	2	0	0	2	2	2	1	PUA-like	domain
PaREP1	PF05942.6	gi|379003946|ref|YP_005259618.1|	-	1e-11	44.7	2.3	1.2e-11	44.4	1.6	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
PaREP1	PF05942.6	gi|379003947|ref|YP_005259619.1|	-	5.8e-07	29.3	0.0	6.7e-07	29.1	0.0	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
DUF1641	PF07849.6	gi|379003948|ref|YP_005259620.1|	-	2e-17	62.5	0.1	3e-17	61.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Fer4_8	PF13183.1	gi|379003949|ref|YP_005259621.1|	-	0.019	14.9	0.1	0.025	14.6	0.1	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003949|ref|YP_005259621.1|	-	0.085	13.2	0.3	0.11	12.9	0.2	1.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
LysE	PF01810.13	gi|379003951|ref|YP_005259623.1|	-	0.06	12.6	0.4	0.059	12.6	0.3	1.0	1	0	0	1	1	1	0	LysE	type	translocator
RCR	PF12273.3	gi|379003951|ref|YP_005259623.1|	-	0.17	12.4	2.1	0.19	12.3	1.4	1.1	1	0	0	1	1	1	0	Chitin	synthesis	regulation,	resistance	to	Congo	red
NKAIN	PF05640.9	gi|379003951|ref|YP_005259623.1|	-	0.29	10.0	1.4	0.3	10.0	1.0	1.1	1	0	0	1	1	1	0	Na,K-Atpase	Interacting	protein
SHP	PF03579.8	gi|379003952|ref|YP_005259624.1|	-	0.19	11.0	1.3	0.22	10.9	0.9	1.1	1	0	0	1	1	1	0	Small	hydrophobic	protein
Radical_SAM	PF04055.16	gi|379003953|ref|YP_005259625.1|	-	2.2e-16	60.4	0.0	4.7e-16	59.4	0.0	1.5	1	1	1	2	2	2	1	Radical	SAM	superfamily
SPASM	PF13186.1	gi|379003953|ref|YP_005259625.1|	-	3.7e-11	43.1	0.2	1e-10	41.7	0.2	1.8	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.1	gi|379003953|ref|YP_005259625.1|	-	0.0064	16.5	0.0	0.012	15.5	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Nitrate_red_gam	PF02665.9	gi|379003954|ref|YP_005259626.1|	-	1.1e-30	106.7	11.0	1.1e-30	106.7	7.6	2.1	2	0	0	2	2	2	2	Nitrate	reductase	gamma	subunit
DUF4149	PF13664.1	gi|379003954|ref|YP_005259626.1|	-	0.22	11.5	13.4	0.03	14.3	4.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4149)
Syndecan	PF01034.15	gi|379003954|ref|YP_005259626.1|	-	1.3	8.6	10.3	0.75	9.4	0.1	2.6	2	0	0	2	2	2	0	Syndecan	domain
NIR_SIR	PF01077.17	gi|379003955|ref|YP_005259627.1|	-	4.3e-29	100.8	0.1	6.5e-29	100.3	0.1	1.2	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003955|ref|YP_005259627.1|	-	0.079	12.5	0.1	0.34	10.5	0.0	2.1	2	0	0	2	2	2	0	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4_7	PF12838.2	gi|379003955|ref|YP_005259627.1|	-	0.17	12.3	0.4	0.48	10.8	0.1	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
NIR_SIR	PF01077.17	gi|379003956|ref|YP_005259628.1|	-	7.7e-37	126.0	0.0	1.7e-36	124.9	0.0	1.5	2	0	0	2	2	2	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003956|ref|YP_005259628.1|	-	9.6e-13	47.5	0.0	1.7e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4_7	PF12838.2	gi|379003956|ref|YP_005259628.1|	-	5.1e-05	23.5	0.3	0.00014	22.1	0.2	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003956|ref|YP_005259628.1|	-	0.00025	20.5	6.5	0.06	12.9	2.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379003956|ref|YP_005259628.1|	-	0.0043	17.2	3.8	0.093	13.0	3.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003956|ref|YP_005259628.1|	-	0.0054	16.7	3.0	0.01	15.8	0.9	2.0	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003956|ref|YP_005259628.1|	-	0.024	15.1	0.5	0.086	13.4	0.1	2.0	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.1	gi|379003956|ref|YP_005259628.1|	-	0.028	14.2	4.7	0.045	13.5	2.1	2.0	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379003956|ref|YP_005259628.1|	-	0.031	14.1	6.4	0.25	11.2	2.3	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379003956|ref|YP_005259628.1|	-	0.061	13.7	0.5	0.061	13.7	0.3	2.1	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|379003956|ref|YP_005259628.1|	-	0.12	13.1	3.3	11	6.8	2.3	2.5	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_19	PF06902.6	gi|379003956|ref|YP_005259628.1|	-	0.5	10.2	8.4	3.4	7.5	0.0	4.0	3	1	1	4	4	4	0	Divergent	4Fe-4S	mono-cluster
Fer4_2	PF12797.2	gi|379003956|ref|YP_005259628.1|	-	0.62	10.1	6.2	0.11	12.4	0.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003956|ref|YP_005259628.1|	-	1.2	9.0	5.7	2	8.3	2.9	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
DsrC	PF04358.8	gi|379003958|ref|YP_005259630.1|	-	1.1e-37	128.6	0.0	1.2e-37	128.4	0.0	1.0	1	0	0	1	1	1	1	DsrC	like	protein
MerR-DNA-bind	PF09278.6	gi|379003958|ref|YP_005259630.1|	-	0.025	14.9	0.0	0.37	11.2	0.0	2.1	2	0	0	2	2	2	0	MerR,	DNA	binding
HTH_45	PF14947.1	gi|379003959|ref|YP_005259631.1|	-	0.017	14.9	0.1	0.061	13.1	0.0	2.0	1	1	1	2	2	2	0	Winged	helix-turn-helix
TrmB	PF01978.14	gi|379003959|ref|YP_005259631.1|	-	0.16	11.7	0.8	0.33	10.6	0.4	1.7	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Pyr_redox_2	PF07992.9	gi|379003960|ref|YP_005259632.1|	-	3.6e-11	43.3	0.0	2.8e-10	40.3	0.0	2.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379003960|ref|YP_005259632.1|	-	3.9e-05	23.9	1.2	0.0041	17.5	0.0	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
RNA_pol_Rpb5_C	PF01191.14	gi|379003960|ref|YP_005259632.1|	-	0.0048	16.4	0.0	0.011	15.3	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
Pyr_redox_3	PF13738.1	gi|379003960|ref|YP_005259632.1|	-	0.016	15.2	0.1	1.4	8.9	0.0	2.9	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379003960|ref|YP_005259632.1|	-	0.028	14.2	0.7	2.7	7.7	0.2	2.4	1	1	1	2	2	2	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|379003960|ref|YP_005259632.1|	-	0.11	11.0	0.1	0.19	10.3	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379003960|ref|YP_005259632.1|	-	0.14	11.9	0.1	0.26	11.0	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
DUF1641	PF07849.6	gi|379003961|ref|YP_005259633.1|	-	2.1e-06	27.2	0.0	3.7e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
DUF2009	PF09418.5	gi|379003961|ref|YP_005259633.1|	-	0.038	12.7	0.3	0.05	12.3	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2009)
Cut8_M	PF14483.1	gi|379003961|ref|YP_005259633.1|	-	0.047	13.4	0.2	0.52	10.1	0.1	2.2	2	0	0	2	2	2	0	Cut8	dimerisation	domain
RE_Eco47II	PF09553.5	gi|379003961|ref|YP_005259633.1|	-	0.074	12.1	0.1	0.091	11.8	0.1	1.1	1	0	0	1	1	1	0	Eco47II	restriction	endonuclease
Rrf2	PF02082.15	gi|379003962|ref|YP_005259634.1|	-	5.2e-05	23.2	0.1	0.00085	19.4	0.0	2.1	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_34	PF13601.1	gi|379003962|ref|YP_005259634.1|	-	0.00081	19.3	0.0	0.0013	18.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.12	gi|379003962|ref|YP_005259634.1|	-	0.017	14.6	0.4	0.48	9.9	0.0	2.2	2	0	0	2	2	2	0	TFIIE	alpha	subunit
HTH_45	PF14947.1	gi|379003962|ref|YP_005259634.1|	-	0.069	12.9	0.7	0.17	11.6	0.2	1.9	1	1	1	2	2	2	0	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|379003962|ref|YP_005259634.1|	-	0.072	12.4	1.4	0.68	9.3	0.0	2.8	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379003962|ref|YP_005259634.1|	-	0.084	12.5	0.2	0.56	9.9	0.0	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379003962|ref|YP_005259634.1|	-	0.091	12.4	0.0	0.2	11.3	0.0	1.6	2	0	0	2	2	2	0	MarR	family
RE_R_Pab1	PF09522.5	gi|379003962|ref|YP_005259634.1|	-	0.23	11.3	4.7	0.13	12.1	1.2	1.9	2	0	0	2	2	2	0	R.Pab1	restriction	endonuclease
Fer4_8	PF13183.1	gi|379003963|ref|YP_005259635.1|	-	5.6e-11	42.3	5.0	1.4e-10	41.0	3.4	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003963|ref|YP_005259635.1|	-	2.7e-09	37.2	4.8	1e-08	35.3	3.3	2.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379003963|ref|YP_005259635.1|	-	3.3e-09	36.9	5.1	3.3e-09	36.9	3.6	2.6	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
CCG	PF02754.11	gi|379003963|ref|YP_005259635.1|	-	1.3e-08	34.7	4.3	2.9e-08	33.5	0.4	3.0	3	0	0	3	3	3	1	Cysteine-rich	domain
Fer4_9	PF13187.1	gi|379003963|ref|YP_005259635.1|	-	1.9e-08	34.4	3.3	0.00038	20.6	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379003963|ref|YP_005259635.1|	-	1.1e-06	28.2	6.2	1.1e-06	28.2	4.3	2.2	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379003963|ref|YP_005259635.1|	-	1.4e-05	25.7	5.1	1.4e-05	25.7	3.5	2.2	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|379003963|ref|YP_005259635.1|	-	2.2e-05	24.7	12.3	0.0077	16.6	0.1	2.9	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003963|ref|YP_005259635.1|	-	8.7e-05	22.5	12.0	0.0043	17.2	1.7	3.0	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003963|ref|YP_005259635.1|	-	0.00016	21.4	4.4	0.026	14.3	0.5	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379003963|ref|YP_005259635.1|	-	0.00022	20.9	11.8	0.0061	16.4	3.2	2.8	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379003963|ref|YP_005259635.1|	-	0.0041	16.6	3.8	0.0041	16.6	2.6	3.0	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379003963|ref|YP_005259635.1|	-	0.007	16.9	3.0	0.96	10.0	0.3	2.5	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_6	PF12837.2	gi|379003963|ref|YP_005259635.1|	-	0.013	15.3	3.3	0.013	15.3	2.3	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379003963|ref|YP_005259635.1|	-	0.095	13.0	7.3	0.59	10.5	0.9	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|379003963|ref|YP_005259635.1|	-	1.4	9.6	27.0	0.092	13.3	4.2	3.2	4	0	0	4	4	2	0	4Fe-4S	binding	domain
EamA	PF00892.15	gi|379003964|ref|YP_005259636.1|	-	0.011	15.8	0.2	0.012	15.6	0.1	1.0	1	0	0	1	1	1	0	EamA-like	transporter	family
FAD_binding_2	PF00890.19	gi|379003965|ref|YP_005259637.1|	-	1.5e-11	43.8	0.2	7.4e-11	41.5	0.0	2.1	2	1	0	3	3	3	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|379003965|ref|YP_005259637.1|	-	1.6e-09	37.6	0.0	2.7e-09	36.9	0.0	1.3	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.19	gi|379003965|ref|YP_005259637.1|	-	7.4e-06	25.1	0.8	0.00013	21.0	0.1	2.2	1	1	2	3	3	3	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379003965|ref|YP_005259637.1|	-	0.00044	20.1	0.1	0.001	19.0	0.1	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|379003965|ref|YP_005259637.1|	-	0.0036	16.2	5.2	0.2	10.4	0.7	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|379003965|ref|YP_005259637.1|	-	0.037	13.1	0.0	0.055	12.5	0.0	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379003965|ref|YP_005259637.1|	-	0.052	12.0	0.2	0.21	10.0	0.0	1.9	2	0	0	2	2	2	0	HI0933-like	protein
Trp_halogenase	PF04820.9	gi|379003965|ref|YP_005259637.1|	-	0.14	10.7	0.2	0.22	10.1	0.1	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
APS-reductase_C	PF12139.3	gi|379003966|ref|YP_005259638.1|	-	3.3e-27	94.4	0.0	4.6e-27	93.9	0.0	1.2	1	0	0	1	1	1	1	Adenosine-5'-phosphosulfate	reductase	beta	subunit
Fer4_7	PF12838.2	gi|379003966|ref|YP_005259638.1|	-	9.4e-10	38.7	13.2	1.5e-09	38.1	9.2	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003966|ref|YP_005259638.1|	-	5.1e-09	35.3	12.9	4.9e-06	25.9	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379003966|ref|YP_005259638.1|	-	7.4e-09	35.2	12.0	1.1e-08	34.6	8.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379003966|ref|YP_005259638.1|	-	3.9e-08	33.4	14.3	6.1e-08	32.8	9.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379003966|ref|YP_005259638.1|	-	7e-08	33.1	5.0	0.0045	17.7	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|379003966|ref|YP_005259638.1|	-	7.4e-08	31.9	15.3	2.3e-05	24.0	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379003966|ref|YP_005259638.1|	-	4.2e-07	29.7	12.3	0.00037	20.6	2.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379003966|ref|YP_005259638.1|	-	1.8e-06	27.5	13.3	0.00026	20.7	1.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|379003966|ref|YP_005259638.1|	-	0.00074	19.8	15.6	0.047	14.1	2.0	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379003966|ref|YP_005259638.1|	-	0.0015	18.9	18.5	0.024	15.1	3.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379003966|ref|YP_005259638.1|	-	0.0033	17.2	13.2	0.059	13.2	2.1	2.0	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003966|ref|YP_005259638.1|	-	0.0043	17.0	14.2	0.026	14.5	10.1	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003966|ref|YP_005259638.1|	-	0.0047	17.4	6.6	0.031	14.8	0.2	2.3	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|379003966|ref|YP_005259638.1|	-	0.01	16.1	15.1	3.4	8.1	10.5	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379003966|ref|YP_005259638.1|	-	0.83	10.0	12.6	2.4	8.5	1.5	2.3	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Metallophos_2	PF12850.2	gi|379003969|ref|YP_005259641.1|	-	5.5e-30	104.2	0.2	6.3e-30	104.0	0.1	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|379003969|ref|YP_005259641.1|	-	4.6e-07	29.4	1.1	1.3e-05	24.6	0.7	2.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|379003969|ref|YP_005259641.1|	-	0.0026	16.9	0.3	2.8	7.0	0.0	2.9	2	1	1	3	3	3	2	Metallophosphoesterase,	calcineurin	superfamily
DUF387	PF04079.11	gi|379003971|ref|YP_005259643.1|	-	2.8e-05	23.5	0.0	5.5e-05	22.5	0.0	1.5	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
TrmB	PF01978.14	gi|379003971|ref|YP_005259643.1|	-	0.00063	19.3	0.4	0.012	15.3	0.1	2.3	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Nitrate_red_gam	PF02665.9	gi|379003972|ref|YP_005259644.1|	-	3.3e-37	127.9	13.2	5.8e-34	117.3	4.6	2.0	2	0	0	2	2	2	2	Nitrate	reductase	gamma	subunit
DUF1624	PF07786.7	gi|379003972|ref|YP_005259644.1|	-	0.16	11.3	9.5	0.47	9.7	0.1	2.8	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1624)
Syndecan	PF01034.15	gi|379003972|ref|YP_005259644.1|	-	2	8.1	4.1	0.66	9.6	0.5	1.9	2	0	0	2	2	2	0	Syndecan	domain
DsrC	PF04358.8	gi|379003973|ref|YP_005259645.1|	-	4e-37	126.8	0.0	4.5e-37	126.6	0.0	1.0	1	0	0	1	1	1	1	DsrC	like	protein
MerR-DNA-bind	PF09278.6	gi|379003973|ref|YP_005259645.1|	-	0.058	13.7	0.0	0.57	10.6	0.0	2.1	2	1	0	2	2	2	0	MerR,	DNA	binding
DrsE	PF02635.10	gi|379003974|ref|YP_005259646.1|	-	3e-15	56.3	0.0	3.2e-15	56.2	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.1	gi|379003974|ref|YP_005259646.1|	-	2.2e-11	43.7	1.7	5.4e-08	32.7	0.1	2.1	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
Pox_A6	PF04924.7	gi|379003974|ref|YP_005259646.1|	-	0.14	10.9	0.0	0.17	10.6	0.0	1.1	1	0	0	1	1	1	0	Poxvirus	A6	protein
NIR_SIR	PF01077.17	gi|379003976|ref|YP_005259648.1|	-	2.2e-38	131.0	0.0	3.5e-38	130.4	0.0	1.3	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003976|ref|YP_005259648.1|	-	3.4e-10	39.4	0.0	5.8e-10	38.6	0.0	1.4	1	0	0	1	1	1	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4_7	PF12838.2	gi|379003976|ref|YP_005259648.1|	-	0.00019	21.7	0.7	0.00052	20.3	0.5	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379003976|ref|YP_005259648.1|	-	0.0078	15.7	6.3	1.6	8.4	2.7	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379003976|ref|YP_005259648.1|	-	0.028	14.4	4.7	0.24	11.4	1.8	2.5	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003976|ref|YP_005259648.1|	-	0.035	14.6	0.3	0.17	12.4	0.1	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.1	gi|379003976|ref|YP_005259648.1|	-	0.07	12.9	4.7	0.23	11.3	2.3	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379003976|ref|YP_005259648.1|	-	0.095	13.1	0.7	0.095	13.1	0.5	2.1	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_6	PF12837.2	gi|379003976|ref|YP_005259648.1|	-	0.15	11.9	5.7	1.3	8.9	1.8	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_19	PF06902.6	gi|379003976|ref|YP_005259648.1|	-	0.17	11.7	2.3	3.9	7.3	0.0	3.2	2	1	1	3	3	3	0	Divergent	4Fe-4S	mono-cluster
DAOA	PF15199.1	gi|379003976|ref|YP_005259648.1|	-	0.17	12.4	0.1	1.4	9.5	0.1	2.1	2	0	0	2	2	2	0	D-amino	acid	oxidase	activator
Fer4_9	PF13187.1	gi|379003976|ref|YP_005259648.1|	-	0.22	11.8	6.7	0.79	10.0	4.1	2.2	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
NIR_SIR	PF01077.17	gi|379003977|ref|YP_005259649.1|	-	2.3e-28	98.5	0.0	3.4e-28	97.9	0.0	1.2	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003977|ref|YP_005259649.1|	-	0.0043	16.6	0.0	0.016	14.7	0.0	2.0	2	0	0	2	2	2	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4_7	PF12838.2	gi|379003977|ref|YP_005259649.1|	-	0.0093	16.3	0.1	0.024	15.0	0.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_19	PF06902.6	gi|379003977|ref|YP_005259649.1|	-	0.33	10.8	1.5	1.8	8.4	0.0	2.3	1	1	1	2	2	2	0	Divergent	4Fe-4S	mono-cluster
TP_methylase	PF00590.15	gi|379003979|ref|YP_005259651.1|	-	9.4e-42	143.0	2.1	1.1e-41	142.8	1.5	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
GATase_3	PF07685.9	gi|379003980|ref|YP_005259652.1|	-	8.3e-30	103.4	0.0	1.2e-29	102.9	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|379003980|ref|YP_005259652.1|	-	1e-18	67.4	0.0	1.7e-18	66.7	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|379003980|ref|YP_005259652.1|	-	2.8e-12	46.6	2.4	7.7e-08	32.1	0.3	2.2	1	1	1	2	2	2	2	AAA	domain
VirC1	PF07015.6	gi|379003980|ref|YP_005259652.1|	-	0.11	11.5	0.0	0.67	8.9	0.0	1.9	1	1	0	1	1	1	0	VirC1	protein
SNO	PF01174.14	gi|379003980|ref|YP_005259652.1|	-	0.13	11.9	0.0	0.26	10.9	0.0	1.5	1	0	0	1	1	1	0	SNO	glutamine	amidotransferase	family
CCG	PF02754.11	gi|379003981|ref|YP_005259653.1|	-	1.3e-11	44.3	1.4	1e-10	41.4	0.1	2.8	3	0	0	3	3	3	1	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|379003981|ref|YP_005259653.1|	-	5.9e-11	42.2	1.4	5.9e-11	42.2	1.0	1.8	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379003981|ref|YP_005259653.1|	-	5e-10	39.5	3.4	9.3e-10	38.7	1.0	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379003981|ref|YP_005259653.1|	-	3.1e-08	33.8	3.7	1.6e-07	31.6	2.7	2.1	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379003981|ref|YP_005259653.1|	-	4.4e-07	30.0	6.3	0.0057	16.8	0.0	2.9	3	0	0	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379003981|ref|YP_005259653.1|	-	5.4e-07	29.9	3.1	0.02	15.3	0.2	2.9	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379003981|ref|YP_005259653.1|	-	2.3e-05	24.1	7.2	0.0017	18.1	6.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379003981|ref|YP_005259653.1|	-	0.00013	22.0	13.0	0.011	15.9	1.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379003981|ref|YP_005259653.1|	-	0.00017	21.0	11.8	0.0092	15.5	2.2	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379003981|ref|YP_005259653.1|	-	0.00019	21.1	11.8	0.069	13.1	2.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379003981|ref|YP_005259653.1|	-	0.013	16.1	13.2	0.076	13.7	5.9	3.3	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379003981|ref|YP_005259653.1|	-	0.023	14.5	10.6	0.11	12.3	0.6	2.6	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379003981|ref|YP_005259653.1|	-	0.029	14.9	16.6	0.52	10.9	2.1	2.6	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379003981|ref|YP_005259653.1|	-	0.1	12.5	15.6	0.061	13.2	2.7	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379003981|ref|YP_005259653.1|	-	0.19	12.2	4.5	3.8	8.1	0.3	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379003981|ref|YP_005259653.1|	-	0.28	11.5	4.6	12	6.4	0.3	2.9	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Pyr_redox_2	PF07992.9	gi|379003982|ref|YP_005259654.1|	-	8.2e-13	48.6	0.0	2.2e-12	47.3	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379003982|ref|YP_005259654.1|	-	1.8e-05	24.5	0.1	0.0064	16.2	0.0	2.4	1	1	1	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox	PF00070.22	gi|379003982|ref|YP_005259654.1|	-	0.00011	22.5	1.3	0.36	11.2	0.0	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379003982|ref|YP_005259654.1|	-	0.00072	18.5	1.4	0.2	10.5	0.1	3.0	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.9	gi|379003982|ref|YP_005259654.1|	-	0.0078	14.8	0.0	0.016	13.8	0.0	1.5	1	0	0	1	1	1	1	Tryptophan	halogenase
GIDA	PF01134.17	gi|379003982|ref|YP_005259654.1|	-	0.034	13.0	0.3	0.54	9.0	0.0	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
DUF1641	PF07849.6	gi|379003983|ref|YP_005259655.1|	-	4.2e-18	64.6	1.2	8e-18	63.7	0.2	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
DUF3562	PF12085.3	gi|379003983|ref|YP_005259655.1|	-	0.0078	16.0	0.1	5.1	7.0	0.0	2.5	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3562)
PAZ_siRNAbind	PF12212.3	gi|379003983|ref|YP_005259655.1|	-	0.13	11.8	0.9	3.4	7.3	0.0	2.4	1	1	1	2	2	2	0	Piwi/Argonaute/Zwille	siRNA-binding	domain
TusA	PF01206.12	gi|379003985|ref|YP_005259657.1|	-	1.2e-12	47.2	0.0	1.5e-12	46.9	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
HEM4	PF02602.10	gi|379003986|ref|YP_005259658.1|	-	3.3e-17	62.5	3.1	4e-17	62.2	2.2	1.1	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
HEM4	PF02602.10	gi|379003987|ref|YP_005259659.1|	-	2.7e-29	102.0	1.0	3.3e-29	101.7	0.7	1.1	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
PALP	PF00291.20	gi|379003987|ref|YP_005259659.1|	-	0.089	12.0	1.5	0.16	11.1	0.5	1.8	1	1	1	2	2	2	0	Pyridoxal-phosphate	dependent	enzyme
NIR_SIR	PF01077.17	gi|379003988|ref|YP_005259660.1|	-	2.3e-21	75.7	0.3	3.5e-21	75.1	0.2	1.2	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003988|ref|YP_005259660.1|	-	3e-07	29.9	0.0	1.1e-06	28.1	0.0	1.9	2	0	0	2	2	2	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4_7	PF12838.2	gi|379003988|ref|YP_005259660.1|	-	0.0078	16.5	0.1	0.025	14.9	0.1	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_19	PF06902.6	gi|379003988|ref|YP_005259660.1|	-	1	9.2	3.6	1.8	8.4	0.0	2.7	2	1	1	3	3	3	0	Divergent	4Fe-4S	mono-cluster
NIR_SIR	PF01077.17	gi|379003989|ref|YP_005259661.1|	-	2e-35	121.4	0.0	3.3e-35	120.7	0.0	1.3	1	0	0	1	1	1	1	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|379003989|ref|YP_005259661.1|	-	9.7e-08	31.5	0.0	1.7e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
Fer4	PF00037.22	gi|379003989|ref|YP_005259661.1|	-	8.6e-05	21.9	8.4	0.023	14.2	2.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379003989|ref|YP_005259661.1|	-	0.00019	21.7	1.1	0.00019	21.7	0.8	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379003989|ref|YP_005259661.1|	-	0.00074	19.5	0.3	0.013	15.5	0.0	2.5	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379003989|ref|YP_005259661.1|	-	0.00096	19.6	1.1	0.38	11.3	0.1	2.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_6	PF12837.2	gi|379003989|ref|YP_005259661.1|	-	0.011	15.5	8.8	0.081	12.8	2.6	2.8	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379003989|ref|YP_005259661.1|	-	0.022	15.1	6.4	0.37	11.2	0.4	2.8	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain
Fer4_10	PF13237.1	gi|379003989|ref|YP_005259661.1|	-	0.069	12.9	6.2	0.04	13.7	1.6	2.2	2	1	1	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379003989|ref|YP_005259661.1|	-	0.074	12.9	2.9	0.25	11.2	2.0	1.9	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Borrelia_lipo_1	PF05714.6	gi|379003989|ref|YP_005259661.1|	-	0.19	10.7	0.0	0.33	10.0	0.0	1.3	1	0	0	1	1	1	0	Borrelia	burgdorferi	virulent	strain	associated	lipoprotein
Fer4_16	PF13484.1	gi|379003989|ref|YP_005259661.1|	-	0.41	11.4	5.9	38	5.1	3.0	2.6	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|379003989|ref|YP_005259661.1|	-	0.58	10.4	9.8	0.8	10.0	2.7	2.5	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379003989|ref|YP_005259661.1|	-	6.3	7.2	7.6	5.9	7.3	4.0	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
TusA	PF01206.12	gi|379003991|ref|YP_005259663.1|	-	2.5e-23	81.4	0.0	2.8e-23	81.3	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Glyoxalase_3	PF13468.1	gi|379003991|ref|YP_005259663.1|	-	0.026	14.4	0.0	0.03	14.2	0.0	1.1	1	0	0	1	1	1	0	Glyoxalase-like	domain
TusA	PF01206.12	gi|379003992|ref|YP_005259664.1|	-	3.1e-21	74.7	0.0	3.5e-21	74.5	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|379003992|ref|YP_005259664.1|	-	6.8e-05	22.3	0.1	0.00028	20.3	0.1	1.8	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Acylphosphatase	PF00708.13	gi|379003993|ref|YP_005259665.1|	-	4.8e-22	77.8	0.0	1.3e-21	76.4	0.0	1.7	1	0	0	1	1	1	1	Acylphosphatase
AIRS_C	PF02769.17	gi|379003993|ref|YP_005259665.1|	-	0.0069	16.4	0.1	0.015	15.3	0.0	1.7	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
DrsE	PF02635.10	gi|379003994|ref|YP_005259666.1|	-	4.2e-05	23.5	0.0	5e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
SinI	PF08671.5	gi|379003994|ref|YP_005259666.1|	-	0.099	12.0	0.5	0.24	10.8	0.3	1.6	1	0	0	1	1	1	0	Anti-repressor	SinI
YHS	PF04945.8	gi|379003996|ref|YP_005259668.1|	-	1.9e-19	69.2	1.4	2.1e-19	69.0	0.9	1.0	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.5	gi|379003996|ref|YP_005259668.1|	-	0.00036	20.6	1.4	0.00047	20.2	1.0	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|379003996|ref|YP_005259668.1|	-	0.00078	19.0	0.8	0.0019	17.8	0.4	1.7	1	1	1	2	2	2	2	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ribosomal_L24e	PF01246.15	gi|379003996|ref|YP_005259668.1|	-	0.0012	18.6	0.2	0.0014	18.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L24e
DUF2116	PF09889.4	gi|379003996|ref|YP_005259668.1|	-	0.13	12.1	0.5	0.46	10.3	0.3	1.8	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Thioredox_DsbH	PF03190.10	gi|379003997|ref|YP_005259669.1|	-	1.9e-59	200.0	0.0	3.3e-59	199.2	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|379003997|ref|YP_005259669.1|	-	3.5e-17	62.2	1.3	4.8e-17	61.7	0.2	1.8	2	0	0	2	2	2	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|379003997|ref|YP_005259669.1|	-	2.2e-06	27.8	0.0	6.4e-06	26.3	0.0	1.8	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|379003997|ref|YP_005259669.1|	-	0.00056	19.5	0.5	0.001	18.6	0.4	1.3	1	0	0	1	1	1	1	Thioredoxin
Glyco_hydro_76	PF03663.9	gi|379003997|ref|YP_005259669.1|	-	0.038	13.3	0.2	0.08	12.3	0.0	1.6	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	76
GlcNAc_2-epim	PF07221.6	gi|379003997|ref|YP_005259669.1|	-	0.042	12.8	0.1	0.31	10.0	0.2	2.1	2	0	0	2	2	2	0	N-acylglucosamine	2-epimerase	(GlcNAc	2-epimerase)
C5-epim_C	PF06662.8	gi|379003997|ref|YP_005259669.1|	-	0.049	12.9	0.2	0.15	11.3	0.0	1.9	2	0	0	2	2	2	0	D-glucuronyl	C5-epimerase	C-terminus
AhpC-TSA	PF00578.16	gi|379003998|ref|YP_005259670.1|	-	6.1e-39	132.5	0.0	7.1e-39	132.3	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|379003998|ref|YP_005259670.1|	-	8e-24	83.8	0.0	9.2e-24	83.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|379003998|ref|YP_005259670.1|	-	0.15	12.0	0.0	1.4	8.9	0.0	2.0	1	1	0	2	2	2	0	AhpC/TSA	antioxidant	enzyme
Nitro_FeMo-Co	PF02579.12	gi|379003999|ref|YP_005259671.1|	-	6.7e-07	29.3	0.0	8.3e-05	22.5	0.0	2.2	1	1	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
Glyoxal_oxid_N	PF07250.6	gi|379003999|ref|YP_005259671.1|	-	0.12	11.4	0.0	0.15	11.1	0.0	1.1	1	0	0	1	1	1	0	Glyoxal	oxidase	N-terminus
DUF697	PF05128.7	gi|379004000|ref|YP_005259672.1|	-	0.015	14.7	1.2	0.025	14.0	0.2	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF697)
DUF373	PF04123.8	gi|379004000|ref|YP_005259672.1|	-	0.022	13.7	3.4	0.029	13.3	2.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
DUF1345	PF07077.6	gi|379004000|ref|YP_005259672.1|	-	2	7.8	7.9	0.11	12.0	1.3	1.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1345)
GYD	PF08734.6	gi|379004001|ref|YP_005259673.1|	-	6.8e-28	96.2	0.0	7.5e-28	96.1	0.0	1.0	1	0	0	1	1	1	1	GYD	domain
CoA_binding_2	PF13380.1	gi|379004002|ref|YP_005259674.1|	-	3.2e-32	111.1	0.1	3.6e-32	110.9	0.1	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|379004002|ref|YP_005259674.1|	-	6.5e-05	23.3	0.0	0.00011	22.6	0.0	1.4	1	0	0	1	1	1	1	CoA	binding	domain
Transglut_core	PF01841.14	gi|379004004|ref|YP_005259676.1|	-	2.2e-22	79.3	0.0	3.3e-22	78.8	0.0	1.3	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF4129	PF13559.1	gi|379004004|ref|YP_005259676.1|	-	0.0002	21.2	0.1	0.00052	19.9	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4129)
Transglut_core3	PF13471.1	gi|379004004|ref|YP_005259676.1|	-	0.00053	19.7	0.2	0.0012	18.6	0.1	1.5	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
DUF1212	PF06738.7	gi|379004005|ref|YP_005259677.1|	-	5.4	6.4	16.4	0.86	9.0	1.0	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1212)
AAA_3	PF07726.6	gi|379004006|ref|YP_005259678.1|	-	9.8e-64	212.8	0.0	1.4e-63	212.3	0.0	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|379004006|ref|YP_005259678.1|	-	4.7e-16	58.7	0.0	1.1e-15	57.6	0.0	1.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.7	gi|379004006|ref|YP_005259678.1|	-	6.3e-09	35.2	0.2	1.8e-07	30.4	0.1	2.5	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA	PF00004.24	gi|379004006|ref|YP_005259678.1|	-	4.3e-07	30.1	0.0	8.2e-07	29.2	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.18	gi|379004006|ref|YP_005259678.1|	-	1.7e-05	23.8	0.0	8.9e-05	21.4	0.0	2.0	2	1	0	2	2	2	1	MCM2/3/5	family
AAA_17	PF13207.1	gi|379004006|ref|YP_005259678.1|	-	0.00011	23.0	0.0	0.00027	21.7	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|379004006|ref|YP_005259678.1|	-	0.00023	20.6	0.0	0.0035	16.8	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|379004006|ref|YP_005259678.1|	-	0.00026	20.2	0.1	0.027	13.6	0.0	2.3	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.1	gi|379004006|ref|YP_005259678.1|	-	0.00097	19.4	0.2	0.0045	17.2	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
TIP49	PF06068.8	gi|379004006|ref|YP_005259678.1|	-	0.0061	15.3	0.0	0.19	10.4	0.0	2.1	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_22	PF13401.1	gi|379004006|ref|YP_005259678.1|	-	0.028	14.5	0.0	0.12	12.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
AAA_33	PF13671.1	gi|379004006|ref|YP_005259678.1|	-	0.042	13.7	0.0	0.23	11.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
Fimbrial_PilY2	PF14481.1	gi|379004006|ref|YP_005259678.1|	-	0.051	12.9	0.0	2.2	7.7	0.0	2.3	2	0	0	2	2	2	0	Type	4	fimbrial	biogenesis	protein	PilY2
SKI	PF01202.17	gi|379004006|ref|YP_005259678.1|	-	0.079	12.8	0.1	0.16	11.8	0.1	1.5	1	0	0	1	1	1	0	Shikimate	kinase
Mg_chelatase_2	PF13335.1	gi|379004006|ref|YP_005259678.1|	-	0.11	12.9	0.0	0.29	11.5	0.0	1.7	2	0	0	2	2	1	0	Magnesium	chelatase,	subunit	ChlI
DUF58	PF01882.13	gi|379004007|ref|YP_005259679.1|	-	1.2e-17	63.8	0.3	2.2e-17	62.9	0.2	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF58
EamA	PF00892.15	gi|379004008|ref|YP_005259680.1|	-	0.075	13.0	0.4	0.075	13.0	0.3	2.5	1	1	1	2	2	2	0	EamA-like	transporter	family
Gram_pos_anchor	PF00746.16	gi|379004008|ref|YP_005259680.1|	-	0.33	10.7	0.0	0.33	10.7	0.0	3.5	4	1	0	4	4	4	0	Gram	positive	anchor
DUF2298	PF10060.4	gi|379004008|ref|YP_005259680.1|	-	5.4	5.7	10.4	45	2.6	1.0	2.1	1	1	1	2	2	2	0	Uncharacterized	membrane	protein	(DUF2298)
Arch_ATPase	PF01637.13	gi|379004009|ref|YP_005259681.1|	-	8e-36	123.8	0.0	1.2e-35	123.3	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|379004009|ref|YP_005259681.1|	-	1.5e-24	85.9	0.0	2.9e-24	85.0	0.0	1.5	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_22	PF13401.1	gi|379004009|ref|YP_005259681.1|	-	1.7e-08	34.6	0.0	3.2e-08	33.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|379004009|ref|YP_005259681.1|	-	8.8e-06	25.6	0.0	2.1e-05	24.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379004009|ref|YP_005259681.1|	-	0.0057	16.6	0.2	0.036	14.0	0.1	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
HTH_5	PF01022.15	gi|379004009|ref|YP_005259681.1|	-	0.0085	15.7	0.1	0.019	14.6	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|379004009|ref|YP_005259681.1|	-	0.11	12.0	0.1	0.29	10.7	0.0	1.7	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Fer4_11	PF13247.1	gi|379004012|ref|YP_005259684.1|	-	1.4e-12	47.3	0.3	2.5e-12	46.5	0.2	1.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004012|ref|YP_005259684.1|	-	0.00014	22.1	3.2	0.0018	18.5	3.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004012|ref|YP_005259684.1|	-	0.00074	19.7	1.8	0.0016	18.6	1.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004012|ref|YP_005259684.1|	-	0.0021	17.6	9.3	0.59	9.8	0.5	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004012|ref|YP_005259684.1|	-	0.027	15.2	4.1	0.12	13.0	0.0	2.7	2	1	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|379004012|ref|YP_005259684.1|	-	0.033	14.7	5.4	0.14	12.8	0.7	2.6	2	1	0	2	2	2	0	4Fe-4S	binding	domain
GF_recep_IV	PF14843.1	gi|379004012|ref|YP_005259684.1|	-	0.073	12.6	0.1	0.088	12.4	0.1	1.1	1	0	0	1	1	1	0	Growth	factor	receptor	domain	IV
Fer4_10	PF13237.1	gi|379004012|ref|YP_005259684.1|	-	0.36	10.6	2.5	0.94	9.3	0.7	1.7	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004012|ref|YP_005259684.1|	-	0.54	10.2	8.0	9.7	6.2	0.5	3.1	3	0	0	3	3	3	0	4Fe-4S	binding	domain
DUF3956	PF13104.1	gi|379004014|ref|YP_005259686.1|	-	0.093	12.2	1.6	0.14	11.7	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3956)
DUF4149	PF13664.1	gi|379004014|ref|YP_005259686.1|	-	1.8	8.6	7.0	1.2	9.2	3.2	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4149)
DUF2306	PF10067.4	gi|379004014|ref|YP_005259686.1|	-	5.7	7.1	8.9	2.5	8.2	0.6	2.4	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2306)
Fer4	PF00037.22	gi|379004015|ref|YP_005259687.1|	-	7.6e-15	53.8	50.3	7.2e-06	25.3	1.1	7.1	8	0	0	8	8	8	4	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004015|ref|YP_005259687.1|	-	4.9e-13	49.2	43.2	5.3e-09	36.3	5.9	4.1	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004015|ref|YP_005259687.1|	-	1.5e-11	43.9	27.3	2.8e-07	30.2	5.6	4.3	4	2	1	5	5	5	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004015|ref|YP_005259687.1|	-	2.6e-10	39.6	48.8	0.0015	18.3	0.8	6.7	8	0	0	8	8	8	4	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004015|ref|YP_005259687.1|	-	5.2e-10	39.4	44.3	3.8e-06	27.0	9.7	4.6	3	1	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004015|ref|YP_005259687.1|	-	1.5e-07	32.0	35.9	0.0079	16.9	0.3	4.9	4	2	0	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|379004015|ref|YP_005259687.1|	-	8.1e-07	28.9	43.7	0.0066	16.4	7.8	5.3	2	2	4	6	6	6	6	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004015|ref|YP_005259687.1|	-	1.5e-06	27.7	48.6	0.00042	20.0	1.6	6.7	7	0	0	7	7	7	4	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379004015|ref|YP_005259687.1|	-	0.00018	21.5	55.3	0.008	16.4	3.0	6.7	6	1	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004015|ref|YP_005259687.1|	-	0.0011	18.8	36.6	0.05	13.4	5.1	4.4	2	2	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004015|ref|YP_005259687.1|	-	0.0023	18.2	43.9	0.029	14.7	2.6	6.1	2	2	5	7	7	7	4	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379004015|ref|YP_005259687.1|	-	0.0067	16.9	59.4	0.02	15.4	4.2	7.1	6	1	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|379004015|ref|YP_005259687.1|	-	0.17	11.8	22.4	0.26	11.1	2.2	2.9	2	1	0	2	2	2	0	4Fe-4S	dicluster	domain
HTH_20	PF12840.2	gi|379004016|ref|YP_005259688.1|	-	2.3e-05	24.0	0.0	0.00012	21.8	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|379004016|ref|YP_005259688.1|	-	4.9e-05	22.9	0.1	0.00013	21.5	0.1	1.8	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379004016|ref|YP_005259688.1|	-	0.012	15.2	0.0	0.025	14.2	0.0	1.5	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.17	gi|379004016|ref|YP_005259688.1|	-	0.023	14.4	0.0	0.047	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.5	gi|379004016|ref|YP_005259688.1|	-	0.026	14.1	0.2	0.067	12.7	0.0	1.8	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379004016|ref|YP_005259688.1|	-	0.09	12.1	0.0	0.16	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Molybdopterin	PF00384.17	gi|379004018|ref|YP_005259690.1|	-	7e-17	61.2	0.2	2.3e-15	56.2	0.1	2.7	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379004018|ref|YP_005259690.1|	-	1.5e-12	47.3	0.2	9.3e-11	41.5	0.0	2.7	1	1	1	2	2	2	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|379004018|ref|YP_005259690.1|	-	2.5e-09	36.8	0.1	4.7e-09	35.9	0.1	1.4	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.4	gi|379004018|ref|YP_005259690.1|	-	2.7	8.2	11.9	0.024	14.6	2.4	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Nitrate_red_del	PF02613.10	gi|379004019|ref|YP_005259691.1|	-	2.1e-15	56.7	0.2	2.9e-15	56.3	0.1	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Fer4	PF00037.22	gi|379004020|ref|YP_005259692.1|	-	2.5e-16	58.4	35.4	4.7e-06	25.9	3.0	6.0	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004020|ref|YP_005259692.1|	-	4.5e-11	42.9	38.3	1.7e-06	28.3	8.6	4.1	3	2	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004020|ref|YP_005259692.1|	-	3.5e-10	39.9	32.1	4.6e-06	26.7	7.1	4.1	3	2	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004020|ref|YP_005259692.1|	-	8.9e-08	32.7	31.6	0.0003	21.4	0.2	4.8	3	2	1	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|379004020|ref|YP_005259692.1|	-	2.9e-06	26.8	43.3	0.0014	18.4	2.6	6.1	7	0	0	7	7	7	4	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004020|ref|YP_005259692.1|	-	2.1e-05	24.3	31.8	0.0024	17.6	8.7	4.5	2	2	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004020|ref|YP_005259692.1|	-	2.5e-05	23.9	39.0	0.0062	16.3	9.1	4.9	2	2	3	5	5	5	5	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004020|ref|YP_005259692.1|	-	0.00043	20.0	34.8	0.025	14.5	3.2	5.9	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379004020|ref|YP_005259692.1|	-	0.0043	17.2	3.8	0.0043	17.2	2.6	6.6	7	0	0	7	7	7	3	4Fe-4S	binding	domain
DUF1289	PF06945.8	gi|379004020|ref|YP_005259692.1|	-	0.016	14.6	0.2	0.016	14.6	0.1	2.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1289)
Fer4_8	PF13183.1	gi|379004020|ref|YP_005259692.1|	-	0.017	15.1	38.9	0.02	14.9	8.2	5.0	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004020|ref|YP_005259692.1|	-	0.023	15.0	34.4	0.095	13.0	1.6	5.8	5	1	2	7	7	7	0	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|379004020|ref|YP_005259692.1|	-	0.055	13.3	25.6	0.062	13.1	3.8	3.5	3	2	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004020|ref|YP_005259692.1|	-	1.1	9.7	29.4	6.1	7.3	3.1	5.8	5	1	1	6	6	6	0	4Fe-4S	dicluster	domain
PaREP1	PF05942.6	gi|379004021|ref|YP_005259693.1|	-	1.5e-05	24.8	1.4	4e-05	23.4	1.0	1.7	1	1	1	2	2	2	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004021|ref|YP_005259693.1|	-	0.013	15.3	0.6	0.033	14.0	0.4	1.7	1	1	0	1	1	1	0	HEPN	domain
Erp_C	PF06780.6	gi|379004021|ref|YP_005259693.1|	-	0.18	11.6	2.6	0.56	10.0	1.7	1.9	1	1	1	2	2	2	0	Erp	protein	C-terminus
TBCA	PF02970.11	gi|379004021|ref|YP_005259693.1|	-	0.18	11.9	1.4	8.3	6.5	0.0	3.2	2	1	1	3	3	3	0	Tubulin	binding	cofactor	A
ThiW	PF09512.5	gi|379004022|ref|YP_005259694.1|	-	3.1e-37	127.7	14.0	3.5e-37	127.5	9.7	1.0	1	0	0	1	1	1	1	Thiamine-precursor	transporter	protein	(ThiW)
5TM-5TMR_LYT	PF07694.7	gi|379004022|ref|YP_005259694.1|	-	5	6.4	12.6	10	5.4	8.7	1.7	1	1	0	1	1	1	0	5TMR	of	5TMR-LYT
AAA_10	PF12846.2	gi|379004023|ref|YP_005259695.1|	-	0.00053	19.5	0.0	0.00062	19.2	0.0	1.4	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|379004023|ref|YP_005259695.1|	-	0.018	14.8	0.1	0.031	14.1	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF87
AAA_19	PF13245.1	gi|379004023|ref|YP_005259695.1|	-	0.052	13.2	1.9	1.9	8.2	0.3	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|379004023|ref|YP_005259695.1|	-	0.06	11.9	0.0	0.099	11.2	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_30	PF13604.1	gi|379004023|ref|YP_005259695.1|	-	0.061	12.9	0.1	0.097	12.2	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
DUF853	PF05872.7	gi|379004023|ref|YP_005259695.1|	-	0.063	11.6	0.1	0.082	11.2	0.1	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|379004023|ref|YP_005259695.1|	-	0.11	11.9	0.1	0.2	11.1	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NACHT	PF05729.7	gi|379004023|ref|YP_005259695.1|	-	0.13	11.9	0.0	0.23	11.1	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
Pox_A32	PF04665.7	gi|379004023|ref|YP_005259695.1|	-	0.18	11.0	0.1	0.24	10.6	0.1	1.1	1	0	0	1	1	1	0	Poxvirus	A32	protein
Adeno_IVa2	PF02456.10	gi|379004023|ref|YP_005259695.1|	-	0.19	10.3	0.0	0.28	9.7	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
ABC_tran	PF00005.22	gi|379004024|ref|YP_005259696.1|	-	3.8e-23	82.3	1.5	6.4e-07	29.7	0.1	4.1	3	1	0	3	3	3	3	ABC	transporter
AAA_21	PF13304.1	gi|379004024|ref|YP_005259696.1|	-	2.2e-19	70.5	0.0	2.2e-06	27.8	0.0	4.1	3	1	0	4	4	4	4	AAA	domain
AAA_25	PF13481.1	gi|379004024|ref|YP_005259696.1|	-	2.4e-06	27.0	1.5	0.014	14.8	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379004024|ref|YP_005259696.1|	-	9.6e-06	24.9	0.1	0.14	11.3	0.0	3.6	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379004024|ref|YP_005259696.1|	-	3.2e-05	23.3	0.0	0.029	13.8	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|379004024|ref|YP_005259696.1|	-	0.00015	21.9	0.1	0.56	10.3	0.0	2.7	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|379004024|ref|YP_005259696.1|	-	0.00026	21.7	0.2	0.3	11.8	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_30	PF13604.1	gi|379004024|ref|YP_005259696.1|	-	0.00042	19.9	0.2	0.69	9.4	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
UPF0079	PF02367.12	gi|379004024|ref|YP_005259696.1|	-	0.00054	19.5	0.1	0.72	9.4	0.0	2.3	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_23	PF13476.1	gi|379004024|ref|YP_005259696.1|	-	0.00083	19.7	0.0	0.018	15.3	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|379004024|ref|YP_005259696.1|	-	0.0016	18.6	1.5	0.77	9.9	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|379004024|ref|YP_005259696.1|	-	0.0034	17.1	0.5	2.3	7.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.12	gi|379004024|ref|YP_005259696.1|	-	0.0051	16.2	1.8	2	7.8	0.1	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.1	gi|379004024|ref|YP_005259696.1|	-	0.012	15.5	2.8	2.7	7.9	0.1	2.6	2	1	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|379004024|ref|YP_005259696.1|	-	0.013	14.9	1.5	1.6	8.0	0.0	3.2	4	0	0	4	4	4	0	AAA-like	domain
RNA_helicase	PF00910.17	gi|379004024|ref|YP_005259696.1|	-	0.019	15.0	0.2	0.54	10.4	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
DUF815	PF05673.8	gi|379004024|ref|YP_005259696.1|	-	0.021	13.7	0.2	0.13	11.1	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
AAA_19	PF13245.1	gi|379004024|ref|YP_005259696.1|	-	0.025	14.3	3.0	0.57	9.9	0.2	3.1	3	0	0	3	3	3	0	Part	of	AAA	domain
Parvo_NS1	PF01057.12	gi|379004024|ref|YP_005259696.1|	-	0.029	13.2	0.0	0.11	11.3	0.0	1.7	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
DUF258	PF03193.11	gi|379004024|ref|YP_005259696.1|	-	0.042	13.0	0.1	0.19	10.9	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
FtsK_SpoIIIE	PF01580.13	gi|379004024|ref|YP_005259696.1|	-	0.043	13.2	0.0	4.9	6.5	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
AAA_16	PF13191.1	gi|379004024|ref|YP_005259696.1|	-	0.059	13.3	4.8	6.7	6.6	1.1	3.1	2	2	1	3	3	3	0	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|379004024|ref|YP_005259696.1|	-	0.075	12.9	0.1	4	7.4	0.0	2.7	2	1	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.7	gi|379004024|ref|YP_005259696.1|	-	0.1	12.2	0.0	3.4	7.2	0.0	2.3	2	0	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.1	gi|379004024|ref|YP_005259696.1|	-	0.11	12.8	1.5	16	5.7	0.0	3.0	2	1	0	2	2	2	0	AAA	domain
Miro	PF08477.8	gi|379004024|ref|YP_005259696.1|	-	0.19	12.2	0.2	8.7	6.8	0.0	2.4	2	0	0	2	2	2	0	Miro-like	protein
SRP54	PF00448.17	gi|379004024|ref|YP_005259696.1|	-	0.19	11.1	3.3	0.38	10.1	0.5	2.1	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_PrkA	PF08298.6	gi|379004024|ref|YP_005259696.1|	-	0.22	10.1	0.5	2.5	6.6	0.0	2.1	2	0	0	2	2	2	0	PrkA	AAA	domain
AAA_33	PF13671.1	gi|379004024|ref|YP_005259696.1|	-	0.58	10.0	2.0	24	4.7	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
Pirin	PF02678.11	gi|379004026|ref|YP_005259698.1|	-	3.9e-37	126.3	0.0	6.4e-37	125.6	0.0	1.4	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.8	gi|379004026|ref|YP_005259698.1|	-	3e-25	88.3	0.0	4.4e-24	84.5	0.0	2.5	3	0	0	3	3	3	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.6	gi|379004026|ref|YP_005259698.1|	-	0.065	12.7	1.4	0.23	10.9	0.3	2.4	2	1	1	3	3	3	0	Cupin	domain
E1_dh	PF00676.15	gi|379004028|ref|YP_005259700.1|	-	1.6e-72	243.7	0.0	1.9e-72	243.5	0.0	1.0	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|379004028|ref|YP_005259700.1|	-	0.0081	15.1	0.1	0.023	13.6	0.0	1.7	2	0	0	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|379004028|ref|YP_005259700.1|	-	0.013	15.1	2.0	0.013	15.1	1.4	2.3	2	1	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Transket_pyr	PF02779.19	gi|379004029|ref|YP_005259701.1|	-	1.1e-52	178.1	0.0	1.7e-52	177.5	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|379004029|ref|YP_005259701.1|	-	3.2e-35	120.7	1.1	3.2e-35	120.7	0.7	1.8	3	0	0	3	3	3	1	Transketolase,	C-terminal	domain
FMN_red	PF03358.10	gi|379004029|ref|YP_005259701.1|	-	0.12	11.9	0.3	4.5	6.7	0.0	2.6	2	1	1	3	3	3	0	NADPH-dependent	FMN	reductase
2-oxoacid_dh	PF00198.18	gi|379004030|ref|YP_005259702.1|	-	1.6e-86	289.3	0.1	2e-86	289.0	0.1	1.1	1	0	0	1	1	1	1	2-oxoacid	dehydrogenases	acyltransferase	(catalytic	domain)
Biotin_lipoyl	PF00364.17	gi|379004030|ref|YP_005259702.1|	-	1.2e-22	79.3	2.1	2.8e-22	78.1	1.5	1.7	1	0	0	1	1	1	1	Biotin-requiring	enzyme
E3_binding	PF02817.12	gi|379004030|ref|YP_005259702.1|	-	5e-18	64.4	2.7	1.4e-17	63.0	0.8	2.7	2	0	0	2	2	2	1	e3	binding	domain
Biotin_lipoyl_2	PF13533.1	gi|379004030|ref|YP_005259702.1|	-	2.5e-14	52.6	1.9	2.4e-06	27.0	0.1	2.6	1	1	1	2	2	2	2	Biotin-lipoyl	like
HlyD	PF00529.15	gi|379004030|ref|YP_005259702.1|	-	1.4e-07	31.1	2.6	0.0046	16.2	0.4	2.6	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_2	PF12700.2	gi|379004030|ref|YP_005259702.1|	-	1.6e-05	24.2	0.2	0.0049	16.0	0.0	2.2	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|379004030|ref|YP_005259702.1|	-	0.00012	22.4	0.7	0.34	11.2	0.2	2.5	1	1	1	2	2	2	2	HlyD	family	secretion	protein
DUF2118	PF09891.4	gi|379004030|ref|YP_005259702.1|	-	0.0015	18.2	0.3	0.0037	16.9	0.2	1.7	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
QRPTase_N	PF02749.11	gi|379004030|ref|YP_005259702.1|	-	0.0024	17.6	0.4	1.3	8.8	0.0	2.8	1	1	1	2	2	2	2	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
PYNP_C	PF07831.8	gi|379004030|ref|YP_005259702.1|	-	0.0046	16.3	0.7	0.43	10.0	0.0	2.8	1	1	1	2	2	2	1	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
NQRA	PF05896.6	gi|379004030|ref|YP_005259702.1|	-	0.0048	16.1	0.3	0.011	14.9	0.2	1.6	1	1	0	1	1	1	1	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
RnfC_N	PF13375.1	gi|379004030|ref|YP_005259702.1|	-	0.021	14.5	0.5	0.12	12.1	0.3	2.2	1	1	1	2	2	2	0	RnfC	Barrel	sandwich	hybrid	domain
PTS_EIIA_1	PF00358.15	gi|379004030|ref|YP_005259702.1|	-	0.085	12.4	1.3	0.53	9.8	0.1	2.6	2	1	1	3	3	3	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
DUF1892	PF08987.5	gi|379004030|ref|YP_005259702.1|	-	0.12	12.3	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1892)
GCV_H	PF01597.14	gi|379004030|ref|YP_005259702.1|	-	0.15	11.7	0.5	0.51	10.0	0.2	1.9	1	1	1	2	2	2	0	Glycine	cleavage	H-protein
PCP_red	PF08369.5	gi|379004030|ref|YP_005259702.1|	-	1.6	8.6	6.8	3.6	7.5	0.0	3.5	3	0	0	3	3	3	0	Proto-chlorophyllide	reductase	57	kD	subunit
Pyr_redox_2	PF07992.9	gi|379004031|ref|YP_005259703.1|	-	2.3e-37	128.8	7.3	1e-25	90.8	0.1	4.0	1	1	2	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|379004031|ref|YP_005259703.1|	-	1.1e-30	105.8	0.2	4.8e-30	103.8	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|379004031|ref|YP_005259703.1|	-	1.4e-23	83.0	8.1	1.2e-18	67.2	0.6	2.6	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|379004031|ref|YP_005259703.1|	-	4.4e-15	55.4	9.5	3.8e-10	39.2	1.8	2.9	2	1	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_oxidored	PF12831.2	gi|379004031|ref|YP_005259703.1|	-	6.9e-12	45.1	12.0	1.2e-09	37.7	0.3	3.2	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379004031|ref|YP_005259703.1|	-	2.2e-11	42.9	13.3	5.7e-06	25.0	1.5	4.0	3	1	1	4	4	4	3	HI0933-like	protein
DAO	PF01266.19	gi|379004031|ref|YP_005259703.1|	-	8e-11	41.4	19.9	4.7e-06	25.7	1.5	4.2	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|379004031|ref|YP_005259703.1|	-	2e-09	37.0	14.1	0.0045	16.0	1.2	3.2	2	1	1	3	3	3	3	FAD	binding	domain
FAD_binding_2	PF00890.19	gi|379004031|ref|YP_005259703.1|	-	2.7e-09	36.3	19.3	1.8e-06	27.0	2.1	3.8	3	2	1	4	4	4	3	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379004031|ref|YP_005259703.1|	-	4.4e-09	36.6	0.3	2.9e-07	30.7	0.2	2.8	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379004031|ref|YP_005259703.1|	-	4.4e-08	32.4	8.3	0.00041	19.3	0.3	3.3	3	1	0	3	3	3	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|379004031|ref|YP_005259703.1|	-	4.6e-08	32.9	4.9	5e-05	23.2	0.2	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|379004031|ref|YP_005259703.1|	-	7.7e-06	25.6	5.1	0.0018	17.9	0.9	2.4	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|379004031|ref|YP_005259703.1|	-	2.8e-05	24.2	1.0	0.17	12.1	0.1	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Thi4	PF01946.12	gi|379004031|ref|YP_005259703.1|	-	6.2e-05	22.2	6.0	0.017	14.2	0.1	2.9	3	0	0	3	3	3	2	Thi4	family
Trp_halogenase	PF04820.9	gi|379004031|ref|YP_005259703.1|	-	0.00016	20.4	8.6	0.00097	17.8	0.2	2.6	3	0	0	3	3	3	2	Tryptophan	halogenase
AlaDh_PNT_C	PF01262.16	gi|379004031|ref|YP_005259703.1|	-	0.00036	20.1	4.3	0.22	11.0	0.1	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|379004031|ref|YP_005259703.1|	-	0.00072	18.9	3.4	0.22	10.8	0.1	2.5	3	0	0	3	3	3	2	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|379004031|ref|YP_005259703.1|	-	0.00076	19.2	9.0	1.6	8.5	0.1	4.1	4	0	0	4	4	4	1	FAD-NAD(P)-binding
XdhC_C	PF13478.1	gi|379004031|ref|YP_005259703.1|	-	0.0053	17.0	0.1	1.4	9.2	0.0	2.6	2	0	0	2	2	2	1	XdhC	Rossmann	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379004031|ref|YP_005259703.1|	-	0.017	14.8	0.4	1.8	8.2	0.0	2.4	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
TrkA_N	PF02254.13	gi|379004031|ref|YP_005259703.1|	-	0.043	13.8	2.1	1.7	8.6	0.1	2.8	2	0	0	2	2	2	0	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|379004031|ref|YP_005259703.1|	-	0.063	12.4	6.9	4.2	6.4	0.0	3.5	4	0	0	4	4	3	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DFP	PF04127.10	gi|379004031|ref|YP_005259703.1|	-	0.15	11.6	0.8	9.4	5.7	0.0	2.5	2	0	0	2	2	2	0	DNA	/	pantothenate	metabolism	flavoprotein
Radical_SAM	PF04055.16	gi|379004032|ref|YP_005259704.1|	-	7.1e-20	71.8	0.1	1.1e-19	71.1	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
BPL_LplA_LipB	PF03099.14	gi|379004033|ref|YP_005259705.1|	-	2.1e-12	47.1	0.3	3.6e-12	46.3	0.2	1.3	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Peptidase_M48	PF01435.13	gi|379004034|ref|YP_005259706.1|	-	3.6e-07	29.9	0.1	5.1e-07	29.4	0.1	1.4	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|379004034|ref|YP_005259706.1|	-	0.062	12.2	0.0	0.13	11.2	0.0	1.5	1	1	0	1	1	1	0	BlaR1	peptidase	M56
MerT	PF02411.10	gi|379004034|ref|YP_005259706.1|	-	0.065	13.0	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	MerT	mercuric	transport	protein
Bmp	PF02608.9	gi|379004035|ref|YP_005259707.1|	-	5.5e-29	100.8	0.0	7.8e-29	100.3	0.0	1.2	1	0	0	1	1	1	1	Basic	membrane	protein
Peripla_BP_6	PF13458.1	gi|379004035|ref|YP_005259707.1|	-	0.00067	19.1	0.1	0.00067	19.1	0.1	2.5	3	0	0	3	3	3	1	Periplasmic	binding	protein
UCR_Fe-S_N	PF10399.4	gi|379004035|ref|YP_005259707.1|	-	0.11	11.6	1.0	0.23	10.6	0.7	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
ABC_tran	PF00005.22	gi|379004036|ref|YP_005259708.1|	-	5e-48	162.8	0.0	1.5e-30	106.2	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|379004036|ref|YP_005259708.1|	-	1e-09	38.8	0.0	0.0011	18.9	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|379004036|ref|YP_005259708.1|	-	0.00014	21.2	0.0	0.00037	19.9	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|379004036|ref|YP_005259708.1|	-	0.0006	18.9	0.0	0.12	11.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|379004036|ref|YP_005259708.1|	-	0.00075	18.7	0.0	0.0027	16.9	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
DUF3322	PF11795.3	gi|379004036|ref|YP_005259708.1|	-	0.0083	15.7	0.6	0.022	14.4	0.2	1.8	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	N-term	(DUF3322)
QRPTase_C	PF01729.14	gi|379004036|ref|YP_005259708.1|	-	0.015	14.7	1.3	8.4	5.8	0.0	3.0	3	0	0	3	3	3	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
AAA_23	PF13476.1	gi|379004036|ref|YP_005259708.1|	-	0.038	14.3	0.0	0.1	12.9	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
SBP_bac_3	PF00497.15	gi|379004036|ref|YP_005259708.1|	-	0.042	13.0	1.1	0.09	12.0	0.0	2.1	3	0	0	3	3	3	0	Bacterial	extracellular	solute-binding	proteins,	family	3
AAA_25	PF13481.1	gi|379004036|ref|YP_005259708.1|	-	0.058	12.7	0.0	0.78	9.1	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.14	gi|379004036|ref|YP_005259708.1|	-	0.17	11.0	0.1	1.1	8.4	0.1	2.4	1	1	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
BPD_transp_2	PF02653.11	gi|379004037|ref|YP_005259709.1|	-	6.7e-26	90.8	33.8	1.2e-25	89.9	23.4	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|379004038|ref|YP_005259710.1|	-	4.6e-20	71.6	29.7	1.5e-19	70.0	20.6	1.7	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
HlyIII	PF03006.15	gi|379004038|ref|YP_005259710.1|	-	0.015	14.7	0.5	0.015	14.7	0.4	2.7	2	1	0	2	2	2	0	Haemolysin-III	related
Asp_protease_2	PF13650.1	gi|379004039|ref|YP_005259711.1|	-	0.00039	20.8	0.0	0.00058	20.3	0.0	1.3	1	1	0	1	1	1	1	Aspartyl	protease
DUF131	PF01998.12	gi|379004039|ref|YP_005259711.1|	-	0.083	12.2	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF131
GTP_EFTU	PF00009.22	gi|379004040|ref|YP_005259712.1|	-	3.3e-35	121.2	0.1	6.5e-35	120.2	0.1	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|379004040|ref|YP_005259712.1|	-	4.1e-20	71.6	0.1	7.4e-20	70.8	0.1	1.4	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|379004040|ref|YP_005259712.1|	-	6.8e-09	35.7	0.2	1.8e-08	34.3	0.1	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
PduV-EutP	PF10662.4	gi|379004040|ref|YP_005259712.1|	-	0.16	11.4	3.1	0.17	11.3	0.0	2.4	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
ABC_tran	PF00005.22	gi|379004041|ref|YP_005259713.1|	-	7.2e-37	126.7	0.0	1.1e-36	126.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
TOBE_2	PF08402.5	gi|379004041|ref|YP_005259713.1|	-	8.6e-10	38.4	0.5	5.1e-09	36.0	0.1	2.6	2	1	1	3	3	3	1	TOBE	domain
AAA_21	PF13304.1	gi|379004041|ref|YP_005259713.1|	-	1.1e-09	38.6	0.0	0.00012	22.1	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|379004041|ref|YP_005259713.1|	-	1.8e-06	28.0	0.2	3.6e-06	27.1	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|379004041|ref|YP_005259713.1|	-	9.9e-05	21.5	0.0	0.0014	17.7	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
TOBE	PF03459.12	gi|379004041|ref|YP_005259713.1|	-	0.00015	21.7	8.5	0.19	11.8	0.1	3.8	3	1	0	3	3	3	2	TOBE	domain
Arch_ATPase	PF01637.13	gi|379004041|ref|YP_005259713.1|	-	0.0011	18.7	0.0	0.0017	18.0	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_22	PF13401.1	gi|379004041|ref|YP_005259713.1|	-	0.0015	18.6	0.4	0.0069	16.5	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379004041|ref|YP_005259713.1|	-	0.0044	17.2	0.0	0.053	13.7	0.0	2.3	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.14	gi|379004041|ref|YP_005259713.1|	-	0.0046	16.2	0.0	0.52	9.4	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|379004041|ref|YP_005259713.1|	-	0.0076	14.8	0.2	0.56	8.7	0.0	2.8	3	0	0	3	3	3	1	Predicted	ATPase	of	the	ABC	class
AAA_17	PF13207.1	gi|379004041|ref|YP_005259713.1|	-	0.0087	16.8	1.3	0.055	14.2	0.9	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|379004041|ref|YP_005259713.1|	-	0.01	15.7	0.0	0.025	14.4	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
DUF258	PF03193.11	gi|379004041|ref|YP_005259713.1|	-	0.015	14.5	0.0	0.028	13.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|379004041|ref|YP_005259713.1|	-	0.015	14.7	0.0	0.059	12.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|379004041|ref|YP_005259713.1|	-	0.015	15.2	0.1	0.051	13.5	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379004041|ref|YP_005259713.1|	-	0.016	14.9	0.0	0.045	13.5	0.0	1.8	1	0	0	1	1	1	0	Part	of	AAA	domain
NACHT	PF05729.7	gi|379004041|ref|YP_005259713.1|	-	0.017	14.7	0.0	0.029	14.0	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.1	gi|379004041|ref|YP_005259713.1|	-	0.018	14.9	1.6	0.21	11.4	1.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|379004041|ref|YP_005259713.1|	-	0.035	13.6	0.0	0.073	12.6	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Adeno_IVa2	PF02456.10	gi|379004041|ref|YP_005259713.1|	-	0.042	12.4	0.0	0.066	11.8	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
Miro	PF08477.8	gi|379004041|ref|YP_005259713.1|	-	0.046	14.2	0.0	0.1	13.0	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_10	PF12846.2	gi|379004041|ref|YP_005259713.1|	-	0.059	12.8	0.0	0.095	12.1	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
AAA_23	PF13476.1	gi|379004041|ref|YP_005259713.1|	-	0.06	13.6	0.0	0.17	12.1	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|379004041|ref|YP_005259713.1|	-	0.06	12.1	0.0	0.1	11.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_18	PF13238.1	gi|379004041|ref|YP_005259713.1|	-	0.1	12.9	0.0	0.29	11.4	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|379004041|ref|YP_005259713.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Rad17	PF03215.10	gi|379004041|ref|YP_005259713.1|	-	0.16	10.6	0.0	0.2	10.3	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
BPD_transp_1	PF00528.17	gi|379004042|ref|YP_005259714.1|	-	1.7e-23	83.1	39.2	1.5e-14	53.9	4.1	3.8	2	2	1	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_6	PF13343.1	gi|379004043|ref|YP_005259715.1|	-	1.6e-17	63.6	0.2	2.5e-17	63.0	0.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|379004043|ref|YP_005259715.1|	-	5.7e-16	59.0	1.0	8.9e-16	58.4	0.7	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|379004043|ref|YP_005259715.1|	-	1.6e-14	54.3	6.3	2.8e-14	53.5	4.3	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|379004043|ref|YP_005259715.1|	-	1.2e-06	28.3	0.6	2.7e-06	27.1	0.4	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
OppC_N	PF12911.2	gi|379004043|ref|YP_005259715.1|	-	0.088	12.1	0.4	0.23	10.8	0.3	1.7	1	0	0	1	1	1	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
Shisa	PF13908.1	gi|379004043|ref|YP_005259715.1|	-	0.2	11.8	7.5	0.31	11.2	5.2	1.2	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Pex14_N	PF04695.8	gi|379004043|ref|YP_005259715.1|	-	0.27	11.2	3.9	0.8	9.7	2.7	1.8	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
PRCC	PF10253.4	gi|379004043|ref|YP_005259715.1|	-	2.2	8.9	6.4	3.7	8.1	4.4	1.3	1	0	0	1	1	1	0	Mitotic	checkpoint	regulator,	MAD2B-interacting
ABC_transp_aux	PF09822.4	gi|379004044|ref|YP_005259716.1|	-	6.7e-07	29.0	0.0	1.6e-06	27.7	0.0	1.6	2	0	0	2	2	2	1	ABC-type	uncharacterized	transport	system
PspA_IM30	PF04012.7	gi|379004044|ref|YP_005259716.1|	-	7.3e-05	22.2	3.0	7.7e-05	22.1	1.2	1.5	1	1	1	2	2	2	1	PspA/IM30	family
Laminin_II	PF06009.7	gi|379004044|ref|YP_005259716.1|	-	0.00029	20.5	2.7	0.00049	19.8	1.9	1.2	1	0	0	1	1	1	1	Laminin	Domain	II
Reo_sigmaC	PF04582.7	gi|379004044|ref|YP_005259716.1|	-	0.00066	18.9	2.1	0.0014	17.8	1.5	1.5	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
LPP	PF04728.8	gi|379004044|ref|YP_005259716.1|	-	0.00072	19.3	10.5	0.39	10.5	1.0	3.3	1	1	2	3	3	3	2	Lipoprotein	leucine-zipper
DUF4631	PF15450.1	gi|379004044|ref|YP_005259716.1|	-	0.00081	17.8	1.6	0.0012	17.2	1.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4631)
NPV_P10	PF05531.7	gi|379004044|ref|YP_005259716.1|	-	0.00095	19.3	7.0	0.24	11.6	0.2	2.4	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
Nup54	PF13874.1	gi|379004044|ref|YP_005259716.1|	-	0.0015	18.2	1.0	0.0023	17.5	0.7	1.2	1	0	0	1	1	1	1	Nucleoporin	complex	subunit	54
IncA	PF04156.9	gi|379004044|ref|YP_005259716.1|	-	0.0018	17.9	0.5	0.0018	17.9	0.4	1.7	1	1	0	1	1	1	1	IncA	protein
COG2	PF06148.6	gi|379004044|ref|YP_005259716.1|	-	0.0022	17.8	1.9	0.098	12.5	0.6	2.2	1	1	1	2	2	2	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Spc7	PF08317.6	gi|379004044|ref|YP_005259716.1|	-	0.0022	16.7	1.0	0.0035	16.0	0.7	1.2	1	0	0	1	1	1	1	Spc7	kinetochore	protein
DUF1664	PF07889.7	gi|379004044|ref|YP_005259716.1|	-	0.0035	17.1	1.2	0.033	13.9	0.1	2.1	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
TBPIP	PF07106.8	gi|379004044|ref|YP_005259716.1|	-	0.0035	16.8	0.5	0.0058	16.1	0.4	1.2	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
WEMBL	PF05701.6	gi|379004044|ref|YP_005259716.1|	-	0.0038	15.7	0.1	0.0054	15.2	0.1	1.1	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
DUF3584	PF12128.3	gi|379004044|ref|YP_005259716.1|	-	0.0094	13.3	0.2	0.012	12.9	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
Baculo_PEP_C	PF04513.7	gi|379004044|ref|YP_005259716.1|	-	0.01	15.6	11.0	0.035	13.9	7.6	1.8	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
ATG16	PF08614.6	gi|379004044|ref|YP_005259716.1|	-	0.012	15.4	1.7	0.018	14.9	1.2	1.2	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF677	PF05055.7	gi|379004044|ref|YP_005259716.1|	-	0.015	14.0	0.1	0.023	13.3	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
FlaC_arch	PF05377.6	gi|379004044|ref|YP_005259716.1|	-	0.016	15.1	0.4	0.34	10.8	0.2	2.3	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
Amidase02_C	PF12123.3	gi|379004044|ref|YP_005259716.1|	-	0.016	14.8	0.1	0.047	13.3	0.0	1.8	2	0	0	2	2	1	0	N-acetylmuramoyl-l-alanine	amidase
Atg14	PF10186.4	gi|379004044|ref|YP_005259716.1|	-	0.037	12.9	0.1	0.053	12.4	0.0	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
CENP-F_leu_zip	PF10473.4	gi|379004044|ref|YP_005259716.1|	-	0.049	13.4	0.2	0.074	12.9	0.1	1.2	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Prominin	PF05478.6	gi|379004044|ref|YP_005259716.1|	-	0.055	11.0	1.0	0.072	10.6	0.7	1.1	1	0	0	1	1	1	0	Prominin
PTRF_SDPR	PF15237.1	gi|379004044|ref|YP_005259716.1|	-	0.057	12.8	3.6	0.091	12.1	2.5	1.2	1	0	0	1	1	1	0	PTRF/SDPR	family
Sec34	PF04136.10	gi|379004044|ref|YP_005259716.1|	-	0.06	13.0	0.4	0.13	11.9	0.2	1.6	1	1	1	2	2	2	0	Sec34-like	family
Gp58	PF07902.6	gi|379004044|ref|YP_005259716.1|	-	0.061	11.5	2.9	0.085	11.0	2.0	1.1	1	0	0	1	1	1	0	gp58-like	protein
IFT57	PF10498.4	gi|379004044|ref|YP_005259716.1|	-	0.067	11.9	0.3	0.095	11.4	0.2	1.1	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
EzrA	PF06160.7	gi|379004044|ref|YP_005259716.1|	-	0.073	11.2	0.9	0.099	10.8	0.6	1.1	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
APG6	PF04111.7	gi|379004044|ref|YP_005259716.1|	-	0.075	12.0	0.7	0.57	9.1	0.1	2.0	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF2968	PF11180.3	gi|379004044|ref|YP_005259716.1|	-	0.11	11.8	5.7	0.23	10.7	3.9	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2968)
Apolipoprotein	PF01442.13	gi|379004044|ref|YP_005259716.1|	-	0.11	11.9	1.2	0.18	11.2	0.9	1.2	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF812	PF05667.6	gi|379004044|ref|YP_005259716.1|	-	0.12	10.8	1.1	0.19	10.2	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
TMF_TATA_bd	PF12325.3	gi|379004044|ref|YP_005259716.1|	-	0.12	12.0	0.9	0.2	11.3	0.6	1.3	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	TATA	binding
Filament	PF00038.16	gi|379004044|ref|YP_005259716.1|	-	0.12	11.7	0.7	0.19	11.1	0.5	1.1	1	0	0	1	1	1	0	Intermediate	filament	protein
AAA_13	PF13166.1	gi|379004044|ref|YP_005259716.1|	-	0.13	10.7	0.7	0.17	10.3	0.5	1.1	1	0	0	1	1	1	0	AAA	domain
Phasin	PF05597.6	gi|379004044|ref|YP_005259716.1|	-	0.13	12.0	1.1	0.4	10.4	0.8	1.8	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
COG5	PF10392.4	gi|379004044|ref|YP_005259716.1|	-	0.13	12.2	1.4	0.77	9.7	1.0	1.9	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
TPR_MLP1_2	PF07926.7	gi|379004044|ref|YP_005259716.1|	-	0.13	11.9	1.6	6.9	6.4	0.0	2.1	1	1	1	2	2	2	0	TPR/MLP1/MLP2-like	protein
ThuA	PF06283.6	gi|379004044|ref|YP_005259716.1|	-	0.13	11.8	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	Trehalose	utilisation
Syntaxin	PF00804.20	gi|379004044|ref|YP_005259716.1|	-	0.14	12.2	0.8	1.4	9.0	0.3	2.2	1	1	0	1	1	1	0	Syntaxin
DUF972	PF06156.8	gi|379004044|ref|YP_005259716.1|	-	0.15	12.4	0.5	0.6	10.4	0.4	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
SF-assemblin	PF06705.6	gi|379004044|ref|YP_005259716.1|	-	0.17	10.9	0.8	0.25	10.4	0.5	1.1	1	0	0	1	1	1	0	SF-assemblin/beta	giardin
YscO	PF07321.7	gi|379004044|ref|YP_005259716.1|	-	0.19	11.5	1.5	0.65	9.7	0.3	1.9	1	1	1	2	2	2	0	Type	III	secretion	protein	YscO
DivIC	PF04977.10	gi|379004044|ref|YP_005259716.1|	-	0.19	11.2	2.9	3.4	7.2	0.9	2.5	1	1	1	2	2	2	0	Septum	formation	initiator
HsbA	PF12296.3	gi|379004044|ref|YP_005259716.1|	-	0.2	11.4	5.2	7.9	6.3	0.2	2.6	1	1	0	2	2	2	0	Hydrophobic	surface	binding	protein	A
ADIP	PF11559.3	gi|379004044|ref|YP_005259716.1|	-	0.26	11.1	1.6	0.43	10.4	1.1	1.3	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
HrpB7	PF09486.5	gi|379004044|ref|YP_005259716.1|	-	0.31	10.9	2.6	1.5	8.7	0.1	2.1	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
Syntaxin_2	PF14523.1	gi|379004044|ref|YP_005259716.1|	-	0.43	10.6	3.1	0.4	10.7	1.0	1.7	1	1	0	1	1	1	0	Syntaxin-like	protein
Fib_alpha	PF08702.5	gi|379004044|ref|YP_005259716.1|	-	0.58	10.2	4.2	3.8	7.6	0.4	2.2	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
SlyX	PF04102.7	gi|379004044|ref|YP_005259716.1|	-	2	8.8	7.9	5.7	7.3	1.5	2.6	1	1	1	2	2	2	0	SlyX
Metallophos	PF00149.23	gi|379004045|ref|YP_005259717.1|	-	1.6e-16	60.2	1.7	2.8e-16	59.5	1.2	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|379004045|ref|YP_005259717.1|	-	9.2e-09	35.3	0.0	2.2e-08	34.0	0.0	1.6	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Mucin	PF01456.12	gi|379004045|ref|YP_005259717.1|	-	7.2	6.3	46.5	14	5.4	32.2	1.5	1	0	0	1	1	1	0	Mucin-like	glycoprotein
AFOR_C	PF01314.13	gi|379004047|ref|YP_005259719.1|	-	7e-107	357.4	0.0	9e-107	357.0	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|379004047|ref|YP_005259719.1|	-	2e-68	229.7	2.3	3.4e-68	228.9	1.6	1.4	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF3169	PF11368.3	gi|379004049|ref|YP_005259721.1|	-	0.12	11.5	4.5	0.2	10.8	3.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3169)
SecD_SecF	PF02355.11	gi|379004049|ref|YP_005259721.1|	-	1.8	7.6	8.4	0.27	10.3	2.2	2.2	1	1	1	2	2	2	0	Protein	export	membrane	protein
RAMPs	PF03787.10	gi|379004050|ref|YP_005259722.1|	-	1.6e-11	44.5	0.1	7.1e-11	42.3	0.1	1.8	1	1	0	1	1	1	1	RAMP	superfamily
PaREP1	PF05942.6	gi|379004051|ref|YP_005259723.1|	-	2e-27	95.3	2.5	2.7e-27	94.9	1.8	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
ABC_tran	PF00005.22	gi|379004052|ref|YP_005259724.1|	-	1.2e-26	93.6	0.0	1.4e-26	93.4	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004052|ref|YP_005259724.1|	-	3.2e-10	40.4	0.0	6.7e-05	22.9	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379004052|ref|YP_005259724.1|	-	1.8e-05	25.1	0.0	2.3e-05	24.7	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004052|ref|YP_005259724.1|	-	5.2e-05	22.6	0.3	8.9e-05	21.9	0.2	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|379004052|ref|YP_005259724.1|	-	0.00011	21.8	0.0	0.00015	21.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379004052|ref|YP_005259724.1|	-	0.00015	21.0	0.2	0.091	11.9	0.0	2.1	1	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
Zeta_toxin	PF06414.7	gi|379004052|ref|YP_005259724.1|	-	0.00037	19.6	0.1	0.00054	19.1	0.1	1.2	1	0	0	1	1	1	1	Zeta	toxin
AAA_19	PF13245.1	gi|379004052|ref|YP_005259724.1|	-	0.00056	19.6	2.3	0.00085	19.0	0.6	2.0	2	1	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379004052|ref|YP_005259724.1|	-	0.0019	18.2	0.3	0.0041	17.1	0.2	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
SRP54	PF00448.17	gi|379004052|ref|YP_005259724.1|	-	0.008	15.6	0.1	0.012	15.0	0.1	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.1	gi|379004052|ref|YP_005259724.1|	-	0.011	15.5	0.0	0.016	15.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379004052|ref|YP_005259724.1|	-	0.014	15.5	0.3	0.04	14.0	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379004052|ref|YP_005259724.1|	-	0.016	15.4	0.0	0.022	14.9	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|379004052|ref|YP_005259724.1|	-	0.019	14.3	0.0	0.025	13.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|379004052|ref|YP_005259724.1|	-	0.02	14.5	0.1	0.04	13.5	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_17	PF13207.1	gi|379004052|ref|YP_005259724.1|	-	0.023	15.4	0.0	0.033	15.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|379004052|ref|YP_005259724.1|	-	0.038	13.9	0.1	0.52	10.2	0.1	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MobB	PF03205.9	gi|379004052|ref|YP_005259724.1|	-	0.05	13.3	0.1	0.085	12.5	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|379004052|ref|YP_005259724.1|	-	0.061	12.9	0.1	0.1	12.2	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_10	PF12846.2	gi|379004052|ref|YP_005259724.1|	-	0.17	11.2	0.4	0.3	10.4	0.2	1.4	2	0	0	2	2	2	0	AAA-like	domain
ABC_tran	PF00005.22	gi|379004054|ref|YP_005259726.1|	-	2.3e-12	47.3	0.0	2.5e-12	47.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004054|ref|YP_005259726.1|	-	8.5e-05	22.6	0.0	8.6e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|379004054|ref|YP_005259726.1|	-	0.00018	21.0	0.0	0.00019	20.9	0.0	1.1	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.1	gi|379004054|ref|YP_005259726.1|	-	0.00061	19.2	0.0	0.00082	18.8	0.0	1.2	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|379004054|ref|YP_005259726.1|	-	0.00061	19.4	0.1	0.00066	19.3	0.0	1.3	1	0	0	1	1	1	1	Part	of	AAA	domain
DUF258	PF03193.11	gi|379004054|ref|YP_005259726.1|	-	0.0011	18.1	0.0	0.0012	18.1	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|379004054|ref|YP_005259726.1|	-	0.0011	19.3	0.0	0.0013	19.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|379004054|ref|YP_005259726.1|	-	0.0023	17.6	0.0	0.0032	17.1	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SMC_N	PF02463.14	gi|379004054|ref|YP_005259726.1|	-	0.0054	16.0	0.1	0.0064	15.7	0.1	1.1	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
T2SE	PF00437.15	gi|379004054|ref|YP_005259726.1|	-	0.017	14.0	0.0	0.022	13.6	0.0	1.1	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_30	PF13604.1	gi|379004054|ref|YP_005259726.1|	-	0.018	14.5	0.0	0.023	14.3	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|379004054|ref|YP_005259726.1|	-	0.022	14.7	0.0	0.022	14.7	0.0	1.1	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|379004054|ref|YP_005259726.1|	-	0.022	15.5	0.1	0.03	15.1	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|379004054|ref|YP_005259726.1|	-	0.026	13.3	0.0	0.026	13.3	0.0	1.1	1	0	0	1	1	1	0	NB-ARC	domain
NACHT	PF05729.7	gi|379004054|ref|YP_005259726.1|	-	0.04	13.5	0.0	0.051	13.2	0.0	1.2	1	0	0	1	1	1	0	NACHT	domain
AAA_10	PF12846.2	gi|379004054|ref|YP_005259726.1|	-	0.051	13.0	0.1	0.062	12.7	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
AAA_13	PF13166.1	gi|379004054|ref|YP_005259726.1|	-	0.053	11.9	0.0	0.054	11.9	0.0	1.0	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379004054|ref|YP_005259726.1|	-	0.057	13.3	0.0	0.062	13.2	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|379004054|ref|YP_005259726.1|	-	0.066	13.0	0.0	0.086	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|379004054|ref|YP_005259726.1|	-	0.084	12.3	0.0	0.11	12.0	0.0	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
cobW	PF02492.14	gi|379004054|ref|YP_005259726.1|	-	0.087	12.2	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA	PF00004.24	gi|379004054|ref|YP_005259726.1|	-	0.088	13.0	0.1	0.094	12.9	0.0	1.2	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379004054|ref|YP_005259726.1|	-	0.089	12.9	0.0	0.091	12.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379004054|ref|YP_005259726.1|	-	0.12	12.3	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_25	PF13481.1	gi|379004054|ref|YP_005259726.1|	-	0.15	11.4	0.0	0.17	11.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Dynamin_N	PF00350.18	gi|379004054|ref|YP_005259726.1|	-	0.15	11.8	0.0	0.19	11.5	0.0	1.1	1	0	0	1	1	1	0	Dynamin	family
Ni_hydr_CYTB	PF01292.15	gi|379004055|ref|YP_005259727.1|	-	2	7.7	7.1	2.6	7.4	4.9	1.2	1	0	0	1	1	1	0	Prokaryotic	cytochrome	b561
DUF4149	PF13664.1	gi|379004055|ref|YP_005259727.1|	-	9.8	6.3	10.3	70	3.5	7.1	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
PsbI	PF02532.9	gi|379004056|ref|YP_005259728.1|	-	0.034	13.7	0.1	0.044	13.3	0.1	1.3	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	I	protein	(PSII	4.8	kDa	protein)
DUF911	PF06023.7	gi|379004062|ref|YP_005259734.1|	-	3e-99	331.8	0.0	3.5e-99	331.6	0.0	1.0	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF911)
Cas_Cas1	PF01867.11	gi|379004063|ref|YP_005259735.1|	-	1.4e-63	214.6	0.0	1.6e-63	214.4	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
DUF134	PF02001.11	gi|379004063|ref|YP_005259735.1|	-	0.027	14.3	0.0	0.056	13.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF134
CRISPR_Cas2	PF09827.4	gi|379004064|ref|YP_005259736.1|	-	2.1e-09	37.3	0.0	2.5e-09	37.1	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Mn_catalase	PF05067.7	gi|379004066|ref|YP_005259738.1|	-	3.6e-78	262.1	0.0	4.3e-78	261.9	0.0	1.0	1	0	0	1	1	1	1	Manganese	containing	catalase
Ferritin-like	PF12902.2	gi|379004066|ref|YP_005259738.1|	-	0.011	15.3	0.0	0.02	14.5	0.0	1.3	1	0	0	1	1	1	0	Ferritin-like
DUF2276	PF10040.4	gi|379004068|ref|YP_005259740.1|	-	3.2e-24	85.4	0.1	8.2e-23	80.9	0.1	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2276)
DUF1626	PF07788.6	gi|379004069|ref|YP_005259741.1|	-	1.8e-10	40.4	3.3	2.9e-10	39.7	2.3	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1626)
DUF4143	PF13635.1	gi|379004069|ref|YP_005259741.1|	-	0.0048	17.0	0.1	0.0085	16.2	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
NERD	PF08378.6	gi|379004069|ref|YP_005259741.1|	-	0.046	13.9	0.1	0.068	13.4	0.1	1.4	1	0	0	1	1	1	0	Nuclease-related	domain
TrkA_N	PF02254.13	gi|379004069|ref|YP_005259741.1|	-	0.056	13.4	0.1	0.11	12.5	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
Yip1	PF04893.12	gi|379004070|ref|YP_005259742.1|	-	0.014	14.8	0.5	0.018	14.5	0.4	1.2	1	0	0	1	1	1	0	Yip1	domain
SecE	PF00584.15	gi|379004070|ref|YP_005259742.1|	-	0.018	14.5	5.1	0.22	11.1	0.1	2.3	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
DUF2417	PF10329.4	gi|379004070|ref|YP_005259742.1|	-	0.048	13.0	1.5	0.057	12.8	1.0	1.1	1	0	0	1	1	1	0	Region	of	unknown	function	(DUF2417)
RAP1	PF07218.6	gi|379004071|ref|YP_005259743.1|	-	0.024	12.7	0.1	0.027	12.5	0.1	1.0	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
LXG	PF04740.7	gi|379004072|ref|YP_005259744.1|	-	0.025	14.3	0.4	0.036	13.8	0.3	1.2	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily
Syntaxin-6_N	PF09177.6	gi|379004072|ref|YP_005259744.1|	-	0.087	13.2	0.4	0.21	12.0	0.3	1.7	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
Lebercilin	PF15619.1	gi|379004072|ref|YP_005259744.1|	-	0.21	10.9	3.2	0.47	9.8	0.5	2.0	2	0	0	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Prefoldin_2	PF01920.15	gi|379004072|ref|YP_005259744.1|	-	0.58	9.9	5.5	0.63	9.8	0.1	2.5	2	1	1	3	3	3	0	Prefoldin	subunit
PIN	PF01850.16	gi|379004073|ref|YP_005259745.1|	-	5.1e-06	26.8	0.1	7e-06	26.3	0.1	1.2	1	0	0	1	1	1	1	PIN	domain
EcoEI_R_C	PF08463.5	gi|379004074|ref|YP_005259746.1|	-	0.071	12.9	0.0	0.072	12.9	0.0	1.0	1	0	0	1	1	1	0	EcoEI	R	protein	C-terminal
PaREP1	PF05942.6	gi|379004075|ref|YP_005259747.1|	-	8.2e-25	86.9	6.0	9.1e-25	86.7	4.2	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
EBV-NA1	PF02905.9	gi|379004075|ref|YP_005259747.1|	-	0.15	11.5	0.1	0.63	9.5	0.0	1.8	2	0	0	2	2	2	0	Epstein	Barr	virus	nuclear	antigen-1,	DNA-binding	domain
DevR	PF01905.11	gi|379004077|ref|YP_005259749.1|	-	2.7e-09	36.2	0.0	3.4e-09	35.9	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
PaREP1	PF05942.6	gi|379004079|ref|YP_005259751.1|	-	2e-27	95.3	2.5	2.7e-27	94.9	1.8	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
RAMPs	PF03787.10	gi|379004080|ref|YP_005259752.1|	-	4.8e-11	42.9	0.1	2.2e-10	40.7	0.1	1.9	1	1	0	1	1	1	1	RAMP	superfamily
NTP_transf_2	PF01909.18	gi|379004082|ref|YP_005259754.1|	-	1.3e-09	38.2	0.0	1.7e-09	37.8	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
HEPN	PF05168.9	gi|379004083|ref|YP_005259755.1|	-	3.1e-34	117.3	2.6	3.7e-34	117.1	1.8	1.0	1	0	0	1	1	1	1	HEPN	domain
HD	PF01966.17	gi|379004087|ref|YP_005259759.1|	-	1.4e-08	34.7	0.3	4.8e-08	33.0	0.1	2.0	2	0	0	2	2	2	1	HD	domain
PhoU	PF01895.14	gi|379004087|ref|YP_005259759.1|	-	0.064	13.7	4.0	0.14	12.6	1.5	2.5	2	0	0	2	2	2	0	PhoU	domain
DUF3692	PF12469.3	gi|379004087|ref|YP_005259759.1|	-	0.15	12.3	0.0	0.36	11.0	0.0	1.7	1	0	0	1	1	1	0	CRISPR-associated	protein
RAMPs	PF03787.10	gi|379004088|ref|YP_005259760.1|	-	0.007	16.2	0.1	0.012	15.4	0.0	1.8	1	1	0	1	1	1	1	RAMP	superfamily
DUF2276	PF10040.4	gi|379004089|ref|YP_005259761.1|	-	0.054	13.7	0.2	0.14	12.3	0.1	1.7	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2276)
DUF461	PF04314.8	gi|379004089|ref|YP_005259761.1|	-	0.13	11.8	0.0	0.26	10.9	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF461)
RAMPs	PF03787.10	gi|379004090|ref|YP_005259762.1|	-	1.6e-08	34.6	0.0	2.7e-08	33.9	0.0	1.4	1	1	0	1	1	1	1	RAMP	superfamily
AAA_21	PF13304.1	gi|379004093|ref|YP_005259765.1|	-	7.2e-05	22.8	0.0	0.00013	22.0	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
Abi_C	PF14355.1	gi|379004093|ref|YP_005259765.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Abortive	infection	C-terminus
Cas_DxTHG	PF09455.5	gi|379004095|ref|YP_005259767.1|	-	9.8e-14	51.2	1.1	4.9e-12	45.6	0.8	2.2	1	1	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
Tmemb_18A	PF09771.4	gi|379004096|ref|YP_005259768.1|	-	0.016	15.2	0.0	0.018	15.0	0.0	1.0	1	0	0	1	1	1	0	Transmembrane	protein	188
Cas_DxTHG	PF09455.5	gi|379004097|ref|YP_005259769.1|	-	2.9e-42	145.1	0.0	3.5e-42	144.9	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
DUF1355	PF07090.6	gi|379004098|ref|YP_005259770.1|	-	0.0021	17.4	0.0	0.0027	17.0	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1355)
Peptidase_U4	PF03419.8	gi|379004098|ref|YP_005259770.1|	-	0.3	10.1	4.7	0.39	9.7	3.3	1.1	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
dCMP_cyt_deam_2	PF08211.6	gi|379004098|ref|YP_005259770.1|	-	0.33	10.9	2.1	0.91	9.5	1.2	1.8	1	1	0	1	1	1	0	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
DUF2276	PF10040.4	gi|379004100|ref|YP_005259772.1|	-	3.6e-26	91.7	1.6	3.8e-26	91.6	0.4	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2276)
PaREP1	PF05942.6	gi|379004101|ref|YP_005259773.1|	-	4e-30	104.0	1.6	5.3e-30	103.6	1.1	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
AAA_21	PF13304.1	gi|379004104|ref|YP_005259776.1|	-	2.5e-09	37.5	0.5	1.5e-08	34.9	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|379004104|ref|YP_005259776.1|	-	0.00076	18.6	0.0	0.056	12.4	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
cobW	PF02492.14	gi|379004104|ref|YP_005259776.1|	-	0.0014	18.1	0.0	0.06	12.7	0.0	2.2	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|379004104|ref|YP_005259776.1|	-	0.0016	18.3	0.0	0.0039	17.1	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004104|ref|YP_005259776.1|	-	0.0021	18.1	0.0	0.0056	16.8	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|379004104|ref|YP_005259776.1|	-	0.0031	17.2	0.0	0.0086	15.8	0.0	1.7	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|379004104|ref|YP_005259776.1|	-	0.0059	17.4	0.1	0.031	15.0	0.0	2.2	1	1	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|379004104|ref|YP_005259776.1|	-	0.0059	16.3	0.2	0.025	14.2	0.0	2.1	2	1	0	2	2	2	1	Archaeal	ATPase
AAA_23	PF13476.1	gi|379004104|ref|YP_005259776.1|	-	0.0065	16.8	0.0	0.0085	16.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379004104|ref|YP_005259776.1|	-	0.007	16.3	0.3	0.015	15.2	0.0	1.7	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379004104|ref|YP_005259776.1|	-	0.017	15.3	0.0	0.035	14.2	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|379004104|ref|YP_005259776.1|	-	0.026	13.9	0.0	0.044	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
ABC_tran	PF00005.22	gi|379004104|ref|YP_005259776.1|	-	0.057	13.7	0.0	0.12	12.7	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_18	PF13238.1	gi|379004104|ref|YP_005259776.1|	-	0.12	12.6	0.0	0.38	11.0	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Cas_Csa4	PF09703.5	gi|379004105|ref|YP_005259777.1|	-	1.1e-44	152.9	0.2	7.2e-44	150.2	0.1	1.8	1	1	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa4)
HD	PF01966.17	gi|379004106|ref|YP_005259778.1|	-	0.00016	21.7	0.0	0.00026	20.9	0.0	1.5	1	0	0	1	1	1	1	HD	domain
DEAD	PF00270.24	gi|379004107|ref|YP_005259779.1|	-	4.1e-10	39.4	0.0	1.5e-09	37.5	0.0	1.9	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|379004107|ref|YP_005259779.1|	-	8e-06	25.7	0.0	2.5e-05	24.2	0.0	1.7	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|379004107|ref|YP_005259779.1|	-	2.6e-05	23.9	0.2	7.3e-05	22.5	0.1	1.8	1	1	0	1	1	1	1	Helicase	conserved	C-terminal	domain
AAA_19	PF13245.1	gi|379004107|ref|YP_005259779.1|	-	0.0027	17.4	0.0	0.022	14.5	0.0	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379004107|ref|YP_005259779.1|	-	0.004	17.1	0.0	0.041	13.8	0.0	2.4	2	0	0	2	2	2	1	AAA	ATPase	domain
PPR_3	PF13812.1	gi|379004107|ref|YP_005259779.1|	-	0.068	13.4	0.1	14	6.2	0.0	3.5	3	0	0	3	3	3	0	Pentatricopeptide	repeat	domain
AAA_30	PF13604.1	gi|379004107|ref|YP_005259779.1|	-	0.072	12.6	0.0	0.33	10.5	0.0	2.2	3	0	0	3	3	3	0	AAA	domain
PIF1	PF05970.9	gi|379004107|ref|YP_005259779.1|	-	0.099	11.5	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
Cas_Cas5d	PF09704.5	gi|379004108|ref|YP_005259780.1|	-	9.4e-13	48.2	0.4	1.1e-12	48.0	0.2	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.11	gi|379004109|ref|YP_005259781.1|	-	3.6e-50	170.3	0.0	4.2e-50	170.0	0.0	1.0	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
IL13	PF03487.8	gi|379004109|ref|YP_005259781.1|	-	0.13	12.0	0.0	0.27	10.9	0.0	1.5	1	0	0	1	1	1	0	Interleukin-13
Peptidase_M3	PF01432.15	gi|379004110|ref|YP_005259782.1|	-	0.042	12.8	0.1	0.048	12.6	0.1	1.1	1	0	0	1	1	1	0	Peptidase	family	M3
GHMP_kinases_C	PF08544.8	gi|379004110|ref|YP_005259782.1|	-	0.1	12.8	0.0	0.17	12.1	0.0	1.5	1	0	0	1	1	1	0	GHMP	kinases	C	terminal
HTH_24	PF13412.1	gi|379004111|ref|YP_005259783.1|	-	4.5e-08	32.3	0.0	1.7e-07	30.5	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|379004111|ref|YP_005259783.1|	-	1.5e-07	31.0	2.2	1.6e-07	31.0	0.5	1.7	2	0	0	2	2	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|379004111|ref|YP_005259783.1|	-	1.2e-06	28.1	0.1	2.6e-06	27.0	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|379004111|ref|YP_005259783.1|	-	1.5e-06	27.6	0.3	3.5e-06	26.4	0.2	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|379004111|ref|YP_005259783.1|	-	3.3e-06	26.6	0.2	0.00017	21.1	0.3	2.6	2	1	0	2	2	2	1	MarR	family
LexA_DNA_bind	PF01726.11	gi|379004111|ref|YP_005259783.1|	-	8.8e-06	25.1	0.1	0.00018	20.9	0.0	2.3	2	0	0	2	2	2	1	LexA	DNA	binding	domain
MarR	PF01047.17	gi|379004111|ref|YP_005259783.1|	-	1.7e-05	24.4	0.0	4.3e-05	23.1	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|379004111|ref|YP_005259783.1|	-	0.00029	20.4	0.0	0.00066	19.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_29	PF13551.1	gi|379004111|ref|YP_005259783.1|	-	0.00072	19.6	0.2	0.0024	17.9	0.1	1.9	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_AsnC-type	PF13404.1	gi|379004111|ref|YP_005259783.1|	-	0.001	18.5	0.1	0.0069	15.8	0.0	2.2	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
GntR	PF00392.16	gi|379004111|ref|YP_005259783.1|	-	0.0017	17.7	2.4	0.027	13.9	0.1	2.9	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	gntR	family
HTH_28	PF13518.1	gi|379004111|ref|YP_005259783.1|	-	0.0031	17.4	0.0	0.0076	16.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|379004111|ref|YP_005259783.1|	-	0.0066	16.3	0.0	0.013	15.4	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_27	PF13463.1	gi|379004111|ref|YP_005259783.1|	-	0.0067	16.7	0.2	0.024	14.9	0.1	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Trp_repressor	PF01371.14	gi|379004111|ref|YP_005259783.1|	-	0.0085	15.9	0.0	0.018	14.9	0.0	1.5	2	0	0	2	2	2	1	Trp	repressor	protein
HTH_34	PF13601.1	gi|379004111|ref|YP_005259783.1|	-	0.013	15.4	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|379004111|ref|YP_005259783.1|	-	0.025	14.3	0.0	0.056	13.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
DUF4423	PF14394.1	gi|379004111|ref|YP_005259783.1|	-	0.03	13.8	0.0	0.077	12.5	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
HTH_23	PF13384.1	gi|379004111|ref|YP_005259783.1|	-	0.083	12.5	0.1	0.28	10.9	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_12	PF08461.5	gi|379004111|ref|YP_005259783.1|	-	0.088	12.5	0.0	0.14	11.8	0.0	1.4	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Rrf2	PF02082.15	gi|379004111|ref|YP_005259783.1|	-	0.092	12.8	0.0	0.29	11.2	0.0	1.8	2	0	0	2	2	1	0	Transcriptional	regulator
DUF911	PF06023.7	gi|379004112|ref|YP_005259784.1|	-	9.2e-90	300.7	0.0	1.1e-89	300.4	0.0	1.0	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF911)
Porin_OmpG	PF09381.5	gi|379004112|ref|YP_005259784.1|	-	0.14	11.2	0.0	0.25	10.3	0.0	1.4	1	0	0	1	1	1	0	Outer	membrane	protein	G	(OmpG)
Cas_Cas1	PF01867.11	gi|379004113|ref|YP_005259785.1|	-	2.8e-61	207.0	0.0	3.1e-61	206.9	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
CRISPR_Cas2	PF09827.4	gi|379004114|ref|YP_005259786.1|	-	1.8e-17	63.2	0.1	2e-17	63.0	0.1	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Ribosomal_L30	PF00327.15	gi|379004114|ref|YP_005259786.1|	-	0.00014	21.3	0.0	0.00024	20.6	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S24e	PF01282.14	gi|379004114|ref|YP_005259786.1|	-	0.028	14.1	0.8	3.5	7.4	0.0	2.1	1	1	1	2	2	2	0	Ribosomal	protein	S24e
Cas_Cas4	PF01930.12	gi|379004115|ref|YP_005259787.1|	-	3.6e-14	52.9	0.0	4.3e-14	52.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|379004115|ref|YP_005259787.1|	-	1.7e-10	40.7	0.1	1.4e-08	34.4	0.0	2.0	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
Cas_DxTHG	PF09455.5	gi|379004116|ref|YP_005259788.1|	-	1.9e-49	168.8	0.0	4.6e-48	164.2	0.0	2.0	1	1	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
Cas_Cmr3	PF09700.5	gi|379004117|ref|YP_005259789.1|	-	5e-11	42.6	0.1	2.5e-09	37.0	0.0	2.1	1	1	0	2	2	2	2	CRISPR-associated	protein	(Cas_Cmr3)
Cas_Cas5d	PF09704.5	gi|379004117|ref|YP_005259789.1|	-	0.12	12.0	0.1	0.15	11.6	0.1	1.3	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas5)
DUF3692	PF12469.3	gi|379004118|ref|YP_005259790.1|	-	2.7e-24	85.6	0.0	1.1e-23	83.6	0.0	2.1	2	0	0	2	2	2	1	CRISPR-associated	protein
RAMPs	PF03787.10	gi|379004119|ref|YP_005259791.1|	-	2.1e-24	86.5	0.0	2.5e-24	86.2	0.0	1.1	1	0	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.10	gi|379004121|ref|YP_005259793.1|	-	4e-06	26.8	0.0	4.8e-06	26.5	0.0	1.2	1	0	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.10	gi|379004122|ref|YP_005259794.1|	-	7.9e-07	29.1	0.1	0.00016	21.6	0.0	2.2	2	0	0	2	2	2	2	RAMP	superfamily
AAA_21	PF13304.1	gi|379004123|ref|YP_005259795.1|	-	7.5e-18	65.4	0.0	1.3e-08	35.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|379004123|ref|YP_005259795.1|	-	2e-06	28.1	0.0	9e-06	26.0	0.0	1.9	1	1	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.1	gi|379004123|ref|YP_005259795.1|	-	3.3e-05	24.3	0.0	4e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379004123|ref|YP_005259795.1|	-	0.00048	19.4	0.0	0.00058	19.1	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379004123|ref|YP_005259795.1|	-	0.00088	18.7	0.0	0.0017	17.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|379004123|ref|YP_005259795.1|	-	0.034	13.8	0.0	0.046	13.4	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
DUF258	PF03193.11	gi|379004123|ref|YP_005259795.1|	-	0.049	12.8	0.0	0.07	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|379004123|ref|YP_005259795.1|	-	0.13	11.6	0.1	0.26	10.6	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
VESA1_N	PF12785.2	gi|379004124|ref|YP_005259796.1|	-	2.4	7.0	9.5	2.7	6.8	6.6	1.0	1	0	0	1	1	1	0	Variant	erythrocyte	surface	antigen-1
AAA_21	PF13304.1	gi|379004126|ref|YP_005259798.1|	-	1.8e-13	51.1	0.1	6e-11	42.8	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|379004126|ref|YP_005259798.1|	-	2.9e-07	30.8	0.0	1.1e-06	28.9	0.0	1.9	1	1	0	1	1	1	1	ABC	transporter
SMC_N	PF02463.14	gi|379004126|ref|YP_005259798.1|	-	0.0002	20.6	0.0	0.00027	20.2	0.0	1.3	1	0	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379004126|ref|YP_005259798.1|	-	0.00038	19.9	0.1	0.00073	19.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|379004126|ref|YP_005259798.1|	-	0.0027	18.0	0.0	0.0033	17.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|379004126|ref|YP_005259798.1|	-	0.01	14.9	0.0	0.018	14.2	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
DUF258	PF03193.11	gi|379004126|ref|YP_005259798.1|	-	0.012	14.7	0.1	0.019	14.1	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_25	PF13481.1	gi|379004126|ref|YP_005259798.1|	-	0.047	13.0	0.0	0.083	12.2	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
DUF3479	PF11965.3	gi|379004126|ref|YP_005259798.1|	-	0.054	13.2	0.0	0.082	12.7	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3479)
AAA_17	PF13207.1	gi|379004126|ref|YP_005259798.1|	-	0.074	13.8	0.7	0.18	12.6	0.5	2.0	1	1	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|379004126|ref|YP_005259798.1|	-	0.096	12.6	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.9	gi|379004126|ref|YP_005259798.1|	-	0.16	11.7	0.0	0.31	10.7	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_13	PF13166.1	gi|379004126|ref|YP_005259798.1|	-	0.16	10.3	0.0	0.21	10.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|379004126|ref|YP_005259798.1|	-	0.19	11.3	0.1	0.29	10.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
NurA	PF09376.5	gi|379004127|ref|YP_005259799.1|	-	1.2e-10	41.3	0.0	1.6e-10	40.9	0.0	1.1	1	0	0	1	1	1	1	NurA	domain
Cas_APE2256	PF09651.5	gi|379004128|ref|YP_005259800.1|	-	1.4e-06	28.0	0.0	1.9e-06	27.6	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
RuvA_C	PF07499.8	gi|379004128|ref|YP_005259800.1|	-	0.0031	17.6	1.2	0.82	9.8	0.3	2.5	2	0	0	2	2	2	2	RuvA,	C-terminal	domain
Antimicrobial10	PF08105.6	gi|379004128|ref|YP_005259800.1|	-	0.12	12.0	0.1	0.3	10.7	0.1	1.7	1	0	0	1	1	1	0	Metchnikowin	family
Cas_APE2256	PF09651.5	gi|379004129|ref|YP_005259801.1|	-	9.6e-39	132.2	0.0	1.3e-38	131.8	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_APE2256)
HTH_29	PF13551.1	gi|379004129|ref|YP_005259801.1|	-	0.035	14.2	0.2	13	6.0	0.0	2.6	3	0	0	3	3	3	0	Winged	helix-turn	helix
Runt	PF00853.14	gi|379004129|ref|YP_005259801.1|	-	0.11	11.9	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	Runt	domain
AAA_10	PF12846.2	gi|379004130|ref|YP_005259802.1|	-	1.1e-18	67.7	0.0	2e-11	43.8	0.0	2.1	1	1	0	2	2	2	2	AAA-like	domain
DUF853	PF05872.7	gi|379004130|ref|YP_005259802.1|	-	1.9e-11	43.0	0.7	2.7e-05	22.7	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|379004130|ref|YP_005259802.1|	-	2.1e-10	40.4	0.1	7.4e-05	22.3	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
DUF87	PF01935.12	gi|379004130|ref|YP_005259802.1|	-	3.7e-08	33.4	0.0	1.2e-07	31.7	0.0	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_22	PF13401.1	gi|379004130|ref|YP_005259802.1|	-	1.6e-06	28.3	0.0	0.0041	17.2	0.0	2.4	2	1	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|379004130|ref|YP_005259802.1|	-	2.2e-06	27.8	2.6	7e-05	22.8	1.8	2.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379004130|ref|YP_005259802.1|	-	2.2e-06	27.9	0.3	0.0051	16.9	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.4	gi|379004130|ref|YP_005259802.1|	-	4.9e-06	25.4	0.0	1.4e-05	23.9	0.0	1.7	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_25	PF13481.1	gi|379004130|ref|YP_005259802.1|	-	0.00028	20.3	0.3	0.37	10.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|379004130|ref|YP_005259802.1|	-	0.00031	21.5	0.2	0.0009	20.0	0.1	2.0	2	1	0	2	2	1	1	AAA	domain
Zot	PF05707.7	gi|379004130|ref|YP_005259802.1|	-	0.0005	19.5	0.5	0.0071	15.8	0.0	2.2	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
NACHT	PF05729.7	gi|379004130|ref|YP_005259802.1|	-	0.00072	19.2	0.1	0.0013	18.3	0.1	1.4	1	0	0	1	1	1	1	NACHT	domain
MobB	PF03205.9	gi|379004130|ref|YP_005259802.1|	-	0.00091	18.9	0.2	0.0021	17.7	0.1	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
T2SE	PF00437.15	gi|379004130|ref|YP_005259802.1|	-	0.0011	17.9	0.0	0.002	17.1	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|379004130|ref|YP_005259802.1|	-	0.0017	18.0	5.5	0.012	15.2	3.8	2.5	1	1	0	1	1	1	1	Part	of	AAA	domain
DUF2075	PF09848.4	gi|379004130|ref|YP_005259802.1|	-	0.0022	17.0	0.2	0.26	10.2	0.0	2.1	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
Zeta_toxin	PF06414.7	gi|379004130|ref|YP_005259802.1|	-	0.0038	16.3	0.3	0.0084	15.2	0.2	1.6	1	1	0	1	1	1	1	Zeta	toxin
AAA_18	PF13238.1	gi|379004130|ref|YP_005259802.1|	-	0.0054	17.0	0.0	0.014	15.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379004130|ref|YP_005259802.1|	-	0.006	16.4	0.6	0.016	15.0	0.1	1.9	2	0	0	2	2	2	1	AAA	domain
UPF0079	PF02367.12	gi|379004130|ref|YP_005259802.1|	-	0.012	15.2	0.1	0.025	14.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Mg_chelatase	PF01078.16	gi|379004130|ref|YP_005259802.1|	-	0.017	14.2	0.0	0.03	13.4	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ResIII	PF04851.10	gi|379004130|ref|YP_005259802.1|	-	0.02	14.7	0.0	0.11	12.3	0.0	1.9	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|379004130|ref|YP_005259802.1|	-	0.02	14.3	0.1	0.84	9.1	0.0	2.2	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_5	PF07728.9	gi|379004130|ref|YP_005259802.1|	-	0.027	14.2	0.1	0.078	12.7	0.1	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Arch_ATPase	PF01637.13	gi|379004130|ref|YP_005259802.1|	-	0.033	13.8	0.0	0.15	11.6	0.0	1.9	2	0	0	2	2	2	0	Archaeal	ATPase
AAA_28	PF13521.1	gi|379004130|ref|YP_005259802.1|	-	0.058	13.3	0.1	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF815	PF05673.8	gi|379004130|ref|YP_005259802.1|	-	0.072	12.0	0.1	0.13	11.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
IPT	PF01745.11	gi|379004130|ref|YP_005259802.1|	-	0.072	12.2	0.1	0.15	11.2	0.0	1.5	1	0	0	1	1	1	0	Isopentenyl	transferase
cobW	PF02492.14	gi|379004130|ref|YP_005259802.1|	-	0.075	12.4	0.1	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.17	gi|379004130|ref|YP_005259802.1|	-	0.1	11.4	0.1	0.17	10.7	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
ABC_tran	PF00005.22	gi|379004130|ref|YP_005259802.1|	-	0.1	12.8	0.0	0.24	11.6	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|379004130|ref|YP_005259802.1|	-	0.13	12.4	0.0	0.23	11.6	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_14	PF13173.1	gi|379004130|ref|YP_005259802.1|	-	0.14	12.0	0.0	0.81	9.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF86	PF01934.12	gi|379004131|ref|YP_005259803.1|	-	1.5e-15	56.8	0.0	1.7e-15	56.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
DUF2250	PF10007.4	gi|379004131|ref|YP_005259803.1|	-	0.052	13.4	0.0	0.14	12.0	0.0	1.8	2	1	1	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
NTP_transf_2	PF01909.18	gi|379004132|ref|YP_005259804.1|	-	0.00099	19.3	0.0	0.0014	18.9	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Glu_synthase	PF01645.12	gi|379004133|ref|YP_005259805.1|	-	8.4e-96	321.0	3.0	8.3e-90	301.3	0.5	2.2	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
FMN_dh	PF01070.13	gi|379004133|ref|YP_005259805.1|	-	4.4e-13	48.8	5.9	0.00022	20.2	0.1	3.7	4	0	0	4	4	4	3	FMN-dependent	dehydrogenase
DHO_dh	PF01180.16	gi|379004133|ref|YP_005259805.1|	-	0.0033	16.4	1.1	7.8	5.3	0.0	3.3	3	0	0	3	3	3	2	Dihydroorotate	dehydrogenase
Glu_syn_central	PF04898.9	gi|379004133|ref|YP_005259805.1|	-	0.0068	15.7	0.4	0.15	11.2	0.0	2.7	3	0	0	3	3	3	1	Glutamate	synthase	central	domain
GXGXG	PF01493.14	gi|379004135|ref|YP_005259807.1|	-	3.1e-24	85.1	34.1	6.5e-16	57.9	11.7	2.3	1	1	1	2	2	2	2	GXGXG	motif
GATase_6	PF13522.1	gi|379004135|ref|YP_005259807.1|	-	7.9e-23	80.8	0.0	1.5e-22	79.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|379004135|ref|YP_005259807.1|	-	3.4e-13	49.0	0.0	1.7e-11	43.4	0.0	2.7	2	1	0	2	2	2	1	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|379004135|ref|YP_005259807.1|	-	7.1e-12	45.1	0.0	1.2e-11	44.4	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|379004136|ref|YP_005259808.1|	-	1.1e-14	54.4	0.0	2e-14	53.6	0.0	1.6	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|379004136|ref|YP_005259808.1|	-	1.1e-07	30.8	0.0	7.1e-05	21.6	0.0	2.2	2	0	0	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|379004136|ref|YP_005259808.1|	-	3.5e-06	26.7	0.0	5.3e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|379004136|ref|YP_005259808.1|	-	0.0035	16.0	0.0	0.0048	15.6	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Gln-synt_C	PF00120.19	gi|379004137|ref|YP_005259809.1|	-	7.5e-76	254.6	0.0	9.4e-76	254.3	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|379004137|ref|YP_005259809.1|	-	2.6e-13	49.3	0.0	4.5e-13	48.5	0.0	1.4	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
tRNA-synt_2	PF00152.15	gi|379004138|ref|YP_005259810.1|	-	2.5e-58	197.4	0.0	4e-58	196.7	0.0	1.3	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_m1G_MT	PF01746.16	gi|379004139|ref|YP_005259811.1|	-	3.7e-10	39.6	0.0	2.8e-09	36.8	0.0	1.9	1	1	0	1	1	1	1	tRNA	(Guanine-1)-methyltransferase
PaREP1	PF05942.6	gi|379004140|ref|YP_005259812.1|	-	3.2e-31	107.5	2.2	4.1e-31	107.2	1.5	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004140|ref|YP_005259812.1|	-	0.068	13.0	4.6	1.5	8.6	0.9	2.1	2	0	0	2	2	2	0	HEPN	domain
DUF996	PF06195.8	gi|379004141|ref|YP_005259813.1|	-	3.4e-38	130.7	16.7	3.4e-38	130.7	11.6	1.9	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF996)
DUF3112	PF11309.3	gi|379004141|ref|YP_005259813.1|	-	0.0076	16.0	1.4	0.012	15.4	1.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3112)
EcsB	PF05975.7	gi|379004141|ref|YP_005259813.1|	-	0.064	11.7	10.2	0.015	13.8	4.7	1.6	1	1	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
DUF1469	PF07332.6	gi|379004141|ref|YP_005259813.1|	-	0.067	12.9	1.0	0.067	12.9	0.7	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1469)
PalH	PF08733.5	gi|379004141|ref|YP_005259813.1|	-	0.23	10.2	3.4	1.7	7.3	3.1	1.7	1	1	1	2	2	2	0	PalH/RIM21
DUF373	PF04123.8	gi|379004141|ref|YP_005259813.1|	-	0.64	8.9	16.0	1.3	7.9	11.2	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
DUF1430	PF07242.6	gi|379004141|ref|YP_005259813.1|	-	0.93	9.6	11.4	0.07	13.2	1.1	2.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1430)
RseC_MucC	PF04246.7	gi|379004141|ref|YP_005259813.1|	-	1.6	8.3	16.3	0.099	12.2	2.1	3.2	2	1	1	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF4131	PF13567.1	gi|379004141|ref|YP_005259813.1|	-	7	6.0	18.3	0.2	11.0	4.6	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
FtsX	PF02687.16	gi|379004141|ref|YP_005259813.1|	-	7.3	6.3	29.4	0.08	12.7	5.5	3.0	1	1	0	2	2	2	0	FtsX-like	permease	family
Peptidase_M19	PF01244.16	gi|379004142|ref|YP_005259814.1|	-	1.5e-81	273.8	0.0	1.7e-81	273.6	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
Amidohydro_2	PF04909.9	gi|379004142|ref|YP_005259814.1|	-	8.9e-06	25.4	0.8	2.9e-05	23.7	0.4	2.0	1	1	0	1	1	1	1	Amidohydrolase
DUF892	PF05974.7	gi|379004143|ref|YP_005259815.1|	-	0.023	14.5	0.1	0.025	14.3	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF892)
Fer4_14	PF13394.1	gi|379004144|ref|YP_005259816.1|	-	1.6e-17	63.6	0.0	2.2e-17	63.1	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|379004144|ref|YP_005259816.1|	-	5.1e-12	46.2	0.0	5.7e-12	46.1	0.0	1.3	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379004144|ref|YP_005259816.1|	-	1e-10	41.8	0.0	1.4e-10	41.4	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
zf-CHCC	PF10276.4	gi|379004144|ref|YP_005259816.1|	-	0.0032	17.2	0.1	0.0057	16.4	0.1	1.4	1	0	0	1	1	1	1	Zinc-finger	domain
NTP_transf_2	PF01909.18	gi|379004146|ref|YP_005259818.1|	-	2.6e-08	34.0	0.0	3.3e-08	33.7	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379004146|ref|YP_005259818.1|	-	0.016	14.7	0.0	0.024	14.2	0.0	1.5	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|379004147|ref|YP_005259819.1|	-	1.5e-28	99.0	1.1	1.7e-28	98.8	0.8	1.0	1	0	0	1	1	1	1	HEPN	domain
TPR_11	PF13414.1	gi|379004147|ref|YP_005259819.1|	-	0.23	11.1	3.2	0.11	12.1	0.3	1.9	2	1	0	2	2	2	0	TPR	repeat
TPR_2	PF07719.12	gi|379004147|ref|YP_005259819.1|	-	3.9	7.6	5.4	8.1	6.6	2.0	2.6	2	1	0	2	2	2	0	Tetratricopeptide	repeat
PadR	PF03551.9	gi|379004148|ref|YP_005259820.1|	-	9.1e-16	57.4	0.0	1.6e-15	56.6	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HemN_C	PF06969.11	gi|379004148|ref|YP_005259820.1|	-	0.0056	16.7	0.0	0.011	15.7	0.0	1.5	1	0	0	1	1	1	1	HemN	C-terminal	domain
Mrr_N	PF14338.1	gi|379004148|ref|YP_005259820.1|	-	0.011	15.8	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	0	Mrr	N-terminal	domain
HTH_27	PF13463.1	gi|379004148|ref|YP_005259820.1|	-	0.019	15.2	0.0	0.046	14.0	0.0	1.7	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|379004148|ref|YP_005259820.1|	-	0.02	14.6	0.0	0.053	13.3	0.0	1.7	2	0	0	2	2	2	0	Winged	helix-turn-helix
MarR	PF01047.17	gi|379004148|ref|YP_005259820.1|	-	0.032	13.9	0.0	0.078	12.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.5	gi|379004148|ref|YP_005259820.1|	-	0.053	13.1	0.3	0.18	11.4	0.0	2.0	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|379004148|ref|YP_005259820.1|	-	0.053	13.2	0.0	0.26	11.0	0.0	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_12	PF08461.5	gi|379004148|ref|YP_005259820.1|	-	0.072	12.8	0.2	0.2	11.4	0.0	1.8	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
AphA_like	PF14557.1	gi|379004148|ref|YP_005259820.1|	-	0.14	11.6	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	Putative	AphA-like	transcriptional	regulator
ABC_tran	PF00005.22	gi|379004149|ref|YP_005259821.1|	-	8.8e-22	77.8	0.0	1.1e-21	77.5	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004149|ref|YP_005259821.1|	-	1.3e-13	51.6	0.0	2.6e-07	30.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379004149|ref|YP_005259821.1|	-	1.1e-08	34.6	0.1	0.00044	19.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|379004149|ref|YP_005259821.1|	-	0.00011	21.4	0.0	0.13	11.3	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|379004149|ref|YP_005259821.1|	-	0.00028	20.9	0.3	0.0011	19.0	0.1	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|379004149|ref|YP_005259821.1|	-	0.001	19.4	0.0	0.0015	18.9	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004149|ref|YP_005259821.1|	-	0.0023	17.4	0.1	0.0042	16.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|379004149|ref|YP_005259821.1|	-	0.0079	15.3	0.1	0.013	14.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|379004149|ref|YP_005259821.1|	-	0.0082	15.8	0.1	0.013	15.2	0.1	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_22	PF13401.1	gi|379004149|ref|YP_005259821.1|	-	0.01	15.9	0.0	0.025	14.7	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379004149|ref|YP_005259821.1|	-	0.02	15.0	0.1	0.24	11.6	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|379004149|ref|YP_005259821.1|	-	0.047	13.3	0.0	0.12	12.1	0.0	1.8	1	1	0	1	1	1	0	NTPase
SbcCD_C	PF13558.1	gi|379004149|ref|YP_005259821.1|	-	0.069	13.0	0.1	0.78	9.6	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Miro	PF08477.8	gi|379004149|ref|YP_005259821.1|	-	0.085	13.3	0.0	0.16	12.4	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
UPF0051	PF01458.12	gi|379004150|ref|YP_005259822.1|	-	1.8e-52	178.0	0.1	2.4e-52	177.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
DUF4098	PF13345.1	gi|379004153|ref|YP_005259825.1|	-	3e-11	43.0	4.1	1.8e-05	24.5	0.0	3.2	2	1	0	3	3	3	3	Domain	of	unknown	function	(DUF4098)
Trans_reg_C	PF00486.23	gi|379004153|ref|YP_005259825.1|	-	0.047	13.6	0.0	0.072	13.0	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulatory	protein,	C	terminal
GXGXG	PF01493.14	gi|379004153|ref|YP_005259825.1|	-	0.25	10.3	8.2	0.14	11.1	2.5	2.2	1	1	1	2	2	2	0	GXGXG	motif
adh_short_C2	PF13561.1	gi|379004158|ref|YP_005259830.1|	-	3.2e-22	79.4	0.4	3.2e-21	76.1	0.3	1.9	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|379004158|ref|YP_005259830.1|	-	1.9e-20	73.4	6.6	2.5e-20	73.0	4.6	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|379004158|ref|YP_005259830.1|	-	5.6e-09	36.2	0.6	8.4e-09	35.6	0.4	1.3	1	1	0	1	1	1	1	NADH(P)-binding
KR	PF08659.5	gi|379004158|ref|YP_005259830.1|	-	1.4e-07	31.3	4.3	2.8e-07	30.3	3.0	1.5	1	1	0	1	1	1	1	KR	domain
DAO	PF01266.19	gi|379004158|ref|YP_005259830.1|	-	0.0093	14.8	0.6	0.013	14.4	0.4	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
DUF460	PF04312.8	gi|379004158|ref|YP_005259830.1|	-	0.018	14.5	0.0	0.034	13.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF460)
THF_DHG_CYH_C	PF02882.14	gi|379004158|ref|YP_005259830.1|	-	0.09	11.8	0.0	0.16	11.0	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
DUF402	PF04167.8	gi|379004159|ref|YP_005259831.1|	-	1.6e-14	53.4	0.1	2.9e-14	52.6	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF402)
Yip1	PF04893.12	gi|379004160|ref|YP_005259832.1|	-	0.0023	17.4	14.4	0.0032	16.9	10.0	1.1	1	0	0	1	1	1	1	Yip1	domain
PMP22_Claudin	PF00822.15	gi|379004160|ref|YP_005259832.1|	-	0.16	11.5	7.0	0.26	10.9	4.9	1.5	1	1	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	family
EcsB	PF05975.7	gi|379004160|ref|YP_005259832.1|	-	0.33	9.3	12.4	0.37	9.2	8.6	1.0	1	0	0	1	1	1	0	Bacterial	ABC	transporter	protein	EcsB
DUF3413	PF11893.3	gi|379004160|ref|YP_005259832.1|	-	0.64	8.8	7.7	0.68	8.7	5.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3413)
DUF360	PF04020.8	gi|379004160|ref|YP_005259832.1|	-	1.6	9.1	17.0	2.6	8.4	11.3	1.8	1	1	1	2	2	2	0	Membrane	protein	of	unknown	function
DUF3043	PF11241.3	gi|379004160|ref|YP_005259832.1|	-	2.2	7.8	5.6	2.9	7.4	3.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3043)
DUF2417	PF10329.4	gi|379004160|ref|YP_005259832.1|	-	3.1	7.1	7.7	3.9	6.8	5.3	1.3	1	0	0	1	1	1	0	Region	of	unknown	function	(DUF2417)
Ion_trans	PF00520.26	gi|379004160|ref|YP_005259832.1|	-	3.5	6.8	10.6	2.6e+02	0.7	7.4	2.1	1	1	0	1	1	1	0	Ion	transport	protein
DUF2207	PF09972.4	gi|379004160|ref|YP_005259832.1|	-	8.1	4.9	12.2	2.5	6.5	6.9	1.3	1	1	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
Amastin	PF07344.6	gi|379004160|ref|YP_005259832.1|	-	8.3	6.0	10.5	13	5.3	7.3	1.5	1	1	0	1	1	1	0	Amastin	surface	glycoprotein
GHMP_kinases_N	PF00288.21	gi|379004161|ref|YP_005259833.1|	-	1.2e-13	50.9	2.8	1.2e-13	50.9	1.9	2.5	3	0	0	3	3	3	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|379004161|ref|YP_005259833.1|	-	1.5e-09	37.9	0.3	1.5e-09	37.9	0.2	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Cyclase	PF04199.8	gi|379004162|ref|YP_005259834.1|	-	1e-35	122.9	0.0	1.2e-35	122.7	0.0	1.0	1	0	0	1	1	1	1	Putative	cyclase
Glyco_tranf_2_3	PF13641.1	gi|379004163|ref|YP_005259835.1|	-	7.5e-19	68.4	1.4	2e-18	67.0	0.9	1.6	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|379004163|ref|YP_005259835.1|	-	6.7e-17	61.8	1.3	9.5e-17	61.3	0.9	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|379004163|ref|YP_005259835.1|	-	1.3e-08	34.3	0.0	2e-08	33.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
DehI	PF10778.4	gi|379004163|ref|YP_005259835.1|	-	0.058	12.9	0.0	0.084	12.3	0.0	1.3	1	0	0	1	1	1	0	Halocarboxylic	acid	dehydrogenase	DehI
Trs65	PF12735.2	gi|379004164|ref|YP_005259836.1|	-	0.15	11.2	0.1	10	5.2	0.0	2.7	1	1	1	2	2	2	0	TRAPP	trafficking	subunit	Trs65
DUF4199	PF13858.1	gi|379004166|ref|YP_005259838.1|	-	2.2e-05	24.4	1.7	8.7e-05	22.5	0.3	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4199)
Romo1	PF10247.4	gi|379004166|ref|YP_005259838.1|	-	0.00027	21.0	2.5	0.00041	20.4	0.1	2.1	2	0	0	2	2	2	1	Reactive	mitochondrial	oxygen	species	modulator	1
VanZ	PF04892.7	gi|379004166|ref|YP_005259838.1|	-	0.015	15.2	0.4	0.029	14.3	0.1	1.5	1	1	0	1	1	1	0	VanZ	like	family
EIIBC-GUT_C	PF07663.6	gi|379004166|ref|YP_005259838.1|	-	0.11	12.6	2.8	0.24	11.5	0.2	2.4	2	0	0	2	2	2	0	Sorbitol	phosphotransferase	enzyme	II	C-terminus
5TM-5TMR_LYT	PF07694.7	gi|379004166|ref|YP_005259838.1|	-	0.14	11.5	7.9	0.17	11.1	1.9	2.2	2	0	0	2	2	2	0	5TMR	of	5TMR-LYT
DUF46	PF01864.12	gi|379004166|ref|YP_005259838.1|	-	1.9	8.3	6.1	6.6	6.5	0.6	2.2	1	1	1	2	2	2	0	Putative	integral	membrane	protein	DUF46
MacB_PCD	PF12704.2	gi|379004167|ref|YP_005259839.1|	-	2.2e-19	70.0	2.7	2.2e-19	70.0	1.9	2.8	3	0	0	3	3	3	2	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|379004167|ref|YP_005259839.1|	-	1.7e-18	66.5	12.2	1.7e-18	66.5	8.4	2.4	2	0	0	2	2	2	2	FtsX-like	permease	family
YjgP_YjgQ	PF03739.9	gi|379004167|ref|YP_005259839.1|	-	0.34	9.6	12.4	0.014	14.1	3.7	2.2	2	0	0	2	2	2	0	Predicted	permease	YjgP/YjgQ	family
Meth_synt_2	PF01717.13	gi|379004168|ref|YP_005259840.1|	-	1e-44	152.8	0.1	4e-28	98.3	0.0	2.1	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|379004168|ref|YP_005259840.1|	-	1.5e-11	44.1	0.0	0.00013	21.3	0.0	3.1	3	0	0	3	3	3	3	Cobalamin-independent	synthase,	N-terminal	domain
Thiolase_N	PF00108.18	gi|379004169|ref|YP_005259841.1|	-	1.6e-68	230.5	0.0	2.8e-68	229.7	0.0	1.3	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379004169|ref|YP_005259841.1|	-	5.3e-46	155.0	1.9	9.6e-46	154.2	0.4	2.0	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|379004169|ref|YP_005259841.1|	-	0.0012	18.3	6.8	0.0016	17.9	0.8	3.1	2	2	1	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
SpoVAD	PF07451.6	gi|379004169|ref|YP_005259841.1|	-	0.024	13.1	0.0	0.039	12.3	0.0	1.3	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AD	(SpoVAD)
DbpA	PF03880.10	gi|379004169|ref|YP_005259841.1|	-	0.094	12.3	0.0	7.4	6.3	0.0	2.8	2	0	0	2	2	2	0	DbpA	RNA	binding	domain
SBP_bac_8	PF13416.1	gi|379004170|ref|YP_005259842.1|	-	1.6e-13	51.0	0.1	8e-12	45.4	0.0	2.9	2	1	1	3	3	3	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|379004170|ref|YP_005259842.1|	-	1.3e-09	37.8	0.1	3.3e-09	36.4	0.0	1.7	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
DUF3953	PF13129.1	gi|379004171|ref|YP_005259843.1|	-	0.9	9.2	8.8	1.8	8.2	0.0	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3953)
DUF1469	PF07332.6	gi|379004171|ref|YP_005259843.1|	-	0.98	9.1	11.1	1.2	8.8	7.7	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1469)
ABC2_membrane_3	PF12698.2	gi|379004171|ref|YP_005259843.1|	-	2.2	7.2	5.5	2.5	7.0	3.8	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Sgf11	PF08209.6	gi|379004172|ref|YP_005259844.1|	-	0.05	12.9	0.5	0.066	12.5	0.4	1.2	1	0	0	1	1	1	0	Sgf11	(transcriptional	regulation	protein)
DUF650	PF04894.7	gi|379004173|ref|YP_005259845.1|	-	3.5e-83	279.2	0.0	4.6e-83	278.8	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|379004173|ref|YP_005259845.1|	-	6.5e-18	64.3	0.2	1.2e-17	63.5	0.1	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
HEPN	PF05168.9	gi|379004174|ref|YP_005259846.1|	-	1.3e-26	92.8	0.4	1.6e-26	92.5	0.3	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.18	gi|379004175|ref|YP_005259847.1|	-	1e-11	44.9	0.1	1.2e-11	44.8	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379004175|ref|YP_005259847.1|	-	0.047	13.3	0.0	0.071	12.7	0.0	1.5	1	1	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
PIN	PF01850.16	gi|379004177|ref|YP_005259849.1|	-	1e-17	64.5	3.8	1.3e-17	64.2	2.6	1.0	1	0	0	1	1	1	1	PIN	domain
DUF2840	PF11000.3	gi|379004177|ref|YP_005259849.1|	-	0.014	14.9	0.1	0.02	14.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2840)
PIN_2	PF10130.4	gi|379004177|ref|YP_005259849.1|	-	0.017	15.1	0.4	0.021	14.8	0.3	1.1	1	0	0	1	1	1	0	PIN	domain
Radical_SAM	PF04055.16	gi|379004178|ref|YP_005259850.1|	-	6.1e-24	85.0	0.0	2.4e-23	83.1	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
zf-NADH-PPase	PF09297.6	gi|379004178|ref|YP_005259850.1|	-	7.2e-05	22.2	2.2	0.0015	18.0	0.1	2.5	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379004178|ref|YP_005259850.1|	-	0.00022	20.5	4.3	0.065	12.7	0.1	2.7	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379004178|ref|YP_005259850.1|	-	0.0017	17.5	4.1	0.2	10.9	0.2	2.7	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|379004178|ref|YP_005259850.1|	-	0.0054	16.1	1.1	3.1	7.3	0.1	2.8	3	0	0	3	3	3	2	Topoisomerase	DNA	binding	C4	zinc	finger
DZR	PF12773.2	gi|379004178|ref|YP_005259850.1|	-	0.0056	16.4	0.1	0.0056	16.4	0.1	2.1	2	0	0	2	2	2	1	Double	zinc	ribbon
IBR	PF01485.16	gi|379004178|ref|YP_005259850.1|	-	0.029	14.2	0.0	0.029	14.2	0.0	2.3	3	0	0	3	3	3	0	IBR	domain
GFA	PF04828.9	gi|379004178|ref|YP_005259850.1|	-	0.067	13.1	0.8	3.5	7.6	0.0	3.2	2	1	1	3	3	3	0	Glutathione-dependent	formaldehyde-activating	enzyme
Fer4_14	PF13394.1	gi|379004178|ref|YP_005259850.1|	-	0.091	12.7	0.6	0.15	12.1	0.0	1.6	2	0	0	2	2	1	0	4Fe-4S	single	cluster	domain
Auto_anti-p27	PF06677.7	gi|379004178|ref|YP_005259850.1|	-	0.32	10.7	3.1	1.8	8.3	0.0	2.8	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
UPF0547	PF10571.4	gi|379004178|ref|YP_005259850.1|	-	3.6	7.3	8.6	4.7	6.9	0.5	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
FtsX	PF02687.16	gi|379004179|ref|YP_005259851.1|	-	0.014	15.1	3.1	0.014	15.1	2.2	2.6	2	1	0	2	2	2	0	FtsX-like	permease	family
CP_ATPgrasp_2	PF14403.1	gi|379004179|ref|YP_005259851.1|	-	0.02	13.5	0.0	0.034	12.8	0.0	1.3	1	0	0	1	1	1	0	Circularly	permuted	ATP-grasp	type	2
SDH_alpha	PF03313.10	gi|379004181|ref|YP_005259853.1|	-	0.77	8.7	3.8	1.1	8.2	2.6	1.2	1	0	0	1	1	1	0	Serine	dehydratase	alpha	chain
Phage_Coat_Gp8	PF05371.7	gi|379004181|ref|YP_005259853.1|	-	2.2	7.9	6.4	0.22	11.1	1.3	1.7	2	0	0	2	2	2	0	Phage	major	coat	protein,	Gp8
DUF1212	PF06738.7	gi|379004181|ref|YP_005259853.1|	-	4.9	6.5	15.7	1.3	8.4	4.2	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1212)
YGGT	PF02325.12	gi|379004181|ref|YP_005259853.1|	-	7.5	6.5	7.5	0.46	10.4	0.8	2.2	2	1	0	2	2	2	0	YGGT	family
ABC_tran	PF00005.22	gi|379004182|ref|YP_005259854.1|	-	5.6e-33	114.1	0.0	7.1e-33	113.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004182|ref|YP_005259854.1|	-	2.1e-12	47.6	0.0	5.4e-06	26.5	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379004182|ref|YP_005259854.1|	-	0.00017	20.9	0.1	0.45	9.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379004182|ref|YP_005259854.1|	-	0.00019	20.8	0.0	0.0004	19.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|379004182|ref|YP_005259854.1|	-	0.00021	20.7	0.1	0.031	13.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|379004182|ref|YP_005259854.1|	-	0.0055	16.5	0.1	0.058	13.3	0.1	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_10	PF12846.2	gi|379004182|ref|YP_005259854.1|	-	0.0063	15.9	0.7	0.25	10.7	0.2	2.2	1	1	0	2	2	2	1	AAA-like	domain
AAA_22	PF13401.1	gi|379004182|ref|YP_005259854.1|	-	0.0078	16.3	0.5	0.42	10.7	0.1	2.3	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|379004182|ref|YP_005259854.1|	-	0.0098	15.0	0.0	0.015	14.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|379004182|ref|YP_005259854.1|	-	0.012	15.6	0.5	0.021	14.7	0.2	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_15	PF13175.1	gi|379004182|ref|YP_005259854.1|	-	0.036	13.1	0.0	2.2	7.2	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|379004182|ref|YP_005259854.1|	-	0.044	14.6	0.0	0.098	13.4	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|379004182|ref|YP_005259854.1|	-	0.053	13.3	0.3	0.12	12.2	0.2	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|379004182|ref|YP_005259854.1|	-	0.15	12.3	0.0	0.31	11.3	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|379004182|ref|YP_005259854.1|	-	0.15	12.3	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
NPCBM_assoc	PF10633.4	gi|379004183|ref|YP_005259855.1|	-	0.0029	17.6	0.1	0.0029	17.6	0.1	5.8	5	1	0	5	5	5	1	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|379004183|ref|YP_005259855.1|	-	0.34	11.0	10.6	0.85	9.7	0.0	4.4	4	1	1	5	5	5	0	CARDB
PKD	PF00801.15	gi|379004183|ref|YP_005259855.1|	-	0.68	9.7	12.5	1.7	8.4	0.7	5.1	3	2	0	3	3	3	0	PKD	domain
MacB_PCD	PF12704.2	gi|379004184|ref|YP_005259856.1|	-	3.9e-24	85.5	4.9	3.9e-24	85.5	3.4	2.8	2	1	0	3	3	3	2	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|379004184|ref|YP_005259856.1|	-	1.8e-19	69.6	11.1	1.8e-19	69.6	7.7	2.6	2	0	0	2	2	2	1	FtsX-like	permease	family
DUF2273	PF10031.4	gi|379004184|ref|YP_005259856.1|	-	0.07	12.7	8.2	0.19	11.3	0.1	3.1	2	0	0	2	2	2	0	Small	integral	membrane	protein	(DUF2273)
DUF360	PF04020.8	gi|379004185|ref|YP_005259857.1|	-	3.1	8.1	15.6	1.6	9.0	0.4	2.2	2	0	0	2	2	2	0	Membrane	protein	of	unknown	function
HTH_45	PF14947.1	gi|379004186|ref|YP_005259858.1|	-	1.3e-23	82.6	0.1	1.4e-23	82.4	0.1	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|379004186|ref|YP_005259858.1|	-	0.0008	19.0	0.0	0.001	18.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
AAA_assoc_C	PF09821.4	gi|379004186|ref|YP_005259858.1|	-	0.0059	16.8	0.0	0.0081	16.4	0.0	1.2	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
MarR_2	PF12802.2	gi|379004186|ref|YP_005259858.1|	-	0.011	15.3	0.2	0.021	14.4	0.1	1.5	2	0	0	2	2	2	0	MarR	family
Rrf2	PF02082.15	gi|379004186|ref|YP_005259858.1|	-	0.085	12.9	0.1	0.12	12.5	0.1	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Lactamase_B_3	PF13483.1	gi|379004187|ref|YP_005259859.1|	-	5.1e-07	29.5	0.0	8.1e-07	28.8	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|379004187|ref|YP_005259859.1|	-	5.6e-07	29.3	0.0	7.8e-07	28.8	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379004187|ref|YP_005259859.1|	-	8.2e-07	28.8	1.5	0.0079	15.8	0.0	3.1	2	1	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Gate	PF07670.9	gi|379004188|ref|YP_005259860.1|	-	3	7.8	8.6	4.9	7.0	0.1	3.2	2	1	0	2	2	2	0	Nucleoside	recognition
AAA_5	PF07728.9	gi|379004190|ref|YP_005259862.1|	-	4.8e-21	74.9	0.0	6.8e-21	74.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|379004190|ref|YP_005259862.1|	-	0.00069	19.8	0.0	0.0023	18.1	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379004190|ref|YP_005259862.1|	-	0.0011	19.1	0.0	0.01	15.9	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|379004190|ref|YP_005259862.1|	-	0.0019	17.3	0.0	0.0036	16.5	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|379004190|ref|YP_005259862.1|	-	0.0049	16.8	0.1	0.022	14.7	0.0	2.1	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379004190|ref|YP_005259862.1|	-	0.03	13.7	0.1	0.12	11.7	0.1	1.8	1	1	0	2	2	2	0	AAA	domain
AAA_3	PF07726.6	gi|379004190|ref|YP_005259862.1|	-	0.03	13.9	0.0	6.3	6.4	0.0	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|379004190|ref|YP_005259862.1|	-	0.059	12.7	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_19	PF13245.1	gi|379004190|ref|YP_005259862.1|	-	0.072	12.8	0.0	0.16	11.7	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_33	PF13671.1	gi|379004190|ref|YP_005259862.1|	-	0.073	12.9	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
HisKA_3	PF07730.8	gi|379004191|ref|YP_005259863.1|	-	0.35	11.2	2.5	4.8	7.6	0.0	3.1	3	0	0	3	3	3	0	Histidine	kinase
DUF1967	PF09269.6	gi|379004192|ref|YP_005259864.1|	-	0.05	13.2	0.1	0.12	12.0	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1967)
DUF2249	PF10006.4	gi|379004193|ref|YP_005259865.1|	-	0.11	12.1	0.1	0.16	11.5	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
PIN	PF01850.16	gi|379004194|ref|YP_005259866.1|	-	4.5e-07	30.2	0.6	5e-07	30.0	0.4	1.2	1	0	0	1	1	1	1	PIN	domain
HTH_20	PF12840.2	gi|379004195|ref|YP_005259867.1|	-	9.7e-08	31.7	0.1	1.6e-07	31.0	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|379004195|ref|YP_005259867.1|	-	1.1e-07	31.2	0.5	2.4e-07	30.2	0.3	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|379004195|ref|YP_005259867.1|	-	5.6e-05	22.7	0.0	9.6e-05	22.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379004195|ref|YP_005259867.1|	-	0.00029	20.4	0.2	0.00056	19.5	0.1	1.4	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|379004195|ref|YP_005259867.1|	-	0.00044	20.5	0.2	0.00077	19.7	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|379004195|ref|YP_005259867.1|	-	0.0007	18.9	0.0	0.0012	18.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379004195|ref|YP_005259867.1|	-	0.00095	18.7	0.0	0.0016	18.0	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|379004195|ref|YP_005259867.1|	-	0.0053	16.4	0.0	0.0089	15.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|379004195|ref|YP_005259867.1|	-	0.019	14.9	0.0	0.031	14.3	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|379004195|ref|YP_005259867.1|	-	0.022	14.6	0.0	0.043	13.7	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_36	PF13730.1	gi|379004195|ref|YP_005259867.1|	-	0.033	14.3	0.0	0.055	13.6	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
MGC-24	PF05283.6	gi|379004195|ref|YP_005259867.1|	-	0.84	9.3	12.0	1.3	8.7	8.3	1.2	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24)
Mucin	PF01456.12	gi|379004195|ref|YP_005259867.1|	-	6	6.6	20.1	13	5.5	13.9	1.5	1	0	0	1	1	1	0	Mucin-like	glycoprotein
PTS_2-RNA	PF01885.11	gi|379004197|ref|YP_005259869.1|	-	2.6e-43	147.5	0.0	3.1e-43	147.2	0.0	1.0	1	0	0	1	1	1	1	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
ATP_bind_3	PF01171.15	gi|379004198|ref|YP_005259870.1|	-	3.5e-15	55.9	0.0	1.1e-14	54.3	0.0	1.7	2	0	0	2	2	2	1	PP-loop	family
RecR	PF02132.10	gi|379004198|ref|YP_005259870.1|	-	2.7e-06	26.7	3.2	2.6e-05	23.5	0.4	2.5	2	0	0	2	2	2	1	RecR	protein
tRNA_Me_trans	PF03054.11	gi|379004198|ref|YP_005259870.1|	-	6.1e-05	21.7	0.4	0.0002	20.0	0.3	1.7	1	1	0	1	1	1	1	tRNA	methyl	transferase
PAPS_reduct	PF01507.14	gi|379004198|ref|YP_005259870.1|	-	0.0001	22.1	0.0	0.00015	21.6	0.0	1.2	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
Asn_synthase	PF00733.16	gi|379004198|ref|YP_005259870.1|	-	0.0004	19.9	0.0	0.00054	19.5	0.0	1.1	1	0	0	1	1	1	1	Asparagine	synthase
QueC	PF06508.8	gi|379004198|ref|YP_005259870.1|	-	0.012	14.8	0.0	0.012	14.8	0.0	1.7	2	0	0	2	2	2	0	Queuosine	biosynthesis	protein	QueC
DUF3090	PF11290.3	gi|379004198|ref|YP_005259870.1|	-	0.052	13.0	1.2	0.097	12.1	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3090)
zf-HIT	PF04438.11	gi|379004198|ref|YP_005259870.1|	-	2.5	7.8	9.5	1.8	8.2	0.1	3.4	2	1	1	3	3	3	0	HIT	zinc	finger
DZR	PF12773.2	gi|379004198|ref|YP_005259870.1|	-	6.3	6.6	7.7	1.1	9.1	0.4	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
Aminotran_1_2	PF00155.16	gi|379004199|ref|YP_005259871.1|	-	2.3e-13	49.8	0.0	1e-12	47.7	0.0	1.9	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
zf-ribbon_3	PF13248.1	gi|379004200|ref|YP_005259872.1|	-	0.0047	16.0	2.5	0.0093	15.1	1.7	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379004200|ref|YP_005259872.1|	-	0.013	14.9	4.0	0.029	13.8	1.9	2.0	1	1	1	2	2	2	0	zinc-ribbon	domain
Prok-RING_1	PF14446.1	gi|379004200|ref|YP_005259872.1|	-	0.023	14.4	2.1	0.036	13.8	1.5	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
PspC	PF04024.7	gi|379004200|ref|YP_005259872.1|	-	0.025	14.0	0.3	0.082	12.3	0.2	1.9	1	0	0	1	1	1	0	PspC	domain
zf-CHCC	PF10276.4	gi|379004200|ref|YP_005259872.1|	-	0.029	14.1	5.6	0.56	10.0	0.1	2.3	1	1	1	2	2	2	0	Zinc-finger	domain
DZR	PF12773.2	gi|379004200|ref|YP_005259872.1|	-	0.038	13.7	1.1	0.065	13.0	0.7	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|379004200|ref|YP_005259872.1|	-	0.04	13.5	1.0	0.09	12.4	0.7	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
A2L_zn_ribbon	PF08792.5	gi|379004200|ref|YP_005259872.1|	-	0.2	11.1	2.5	11	5.6	2.2	2.2	1	1	1	2	2	2	0	A2L	zinc	ribbon	domain
PyrI_C	PF02748.10	gi|379004200|ref|YP_005259872.1|	-	0.74	9.2	4.8	6.1	6.3	0.1	2.4	1	1	1	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-BED	PF02892.10	gi|379004200|ref|YP_005259872.1|	-	8.4	6.2	5.9	12	5.7	0.2	2.3	1	1	1	2	2	2	0	BED	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|379004201|ref|YP_005259873.1|	-	4.8e-07	28.9	1.0	8.3e-07	28.2	0.7	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|379004201|ref|YP_005259873.1|	-	0.00053	19.3	4.1	0.00099	18.5	2.8	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379004201|ref|YP_005259873.1|	-	0.0011	18.5	1.3	0.008	15.7	0.9	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379004201|ref|YP_005259873.1|	-	0.0013	18.3	1.3	0.0095	15.6	0.9	2.1	1	1	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379004201|ref|YP_005259873.1|	-	0.0038	16.3	5.0	0.16	11.1	0.2	2.3	1	1	1	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|379004201|ref|YP_005259873.1|	-	0.0073	16.0	0.4	0.012	15.3	0.3	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-H2C2_2	PF13465.1	gi|379004201|ref|YP_005259873.1|	-	0.061	13.6	3.2	3.8	7.9	0.2	2.5	2	0	0	2	2	2	0	Zinc-finger	double	domain
OrfB_Zn_ribbon	PF07282.6	gi|379004201|ref|YP_005259873.1|	-	0.064	12.9	0.2	0.11	12.1	0.1	1.3	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Prok-RING_4	PF14447.1	gi|379004201|ref|YP_005259873.1|	-	0.069	12.7	1.4	6.1	6.4	0.1	2.3	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	4
zf-Mss51	PF13824.1	gi|379004201|ref|YP_005259873.1|	-	0.14	12.0	1.7	0.22	11.3	1.2	1.3	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
UPF0547	PF10571.4	gi|379004201|ref|YP_005259873.1|	-	0.19	11.4	2.8	4.7	6.9	0.1	2.4	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-Di19	PF05605.7	gi|379004201|ref|YP_005259873.1|	-	0.21	11.7	3.3	7.3	6.8	0.1	2.2	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.1	gi|379004201|ref|YP_005259873.1|	-	0.28	11.6	2.9	8.8	6.9	0.1	2.5	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Cys_rich_CPXG	PF14255.1	gi|379004201|ref|YP_005259873.1|	-	0.28	11.0	4.8	4.3	7.2	0.2	2.4	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zf-C2H2	PF00096.21	gi|379004201|ref|YP_005259873.1|	-	0.35	11.2	1.9	3.3	8.2	0.1	2.4	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-CHCC	PF10276.4	gi|379004201|ref|YP_005259873.1|	-	0.4	10.5	3.8	3.9	7.3	0.4	2.3	2	0	0	2	2	2	0	Zinc-finger	domain
zf-GRF	PF06839.7	gi|379004201|ref|YP_005259873.1|	-	1.1	9.2	5.1	3	7.8	3.5	1.7	1	1	0	1	1	1	0	GRF	zinc	finger
Lar_restr_allev	PF14354.1	gi|379004201|ref|YP_005259873.1|	-	1.5	9.1	4.0	8.9	6.7	2.8	2.0	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
FAP	PF07174.6	gi|379004202|ref|YP_005259874.1|	-	0.00068	19.0	3.6	0.00087	18.6	2.5	1.2	1	0	0	1	1	1	1	Fibronectin-attachment	protein	(FAP)
Mucin	PF01456.12	gi|379004202|ref|YP_005259874.1|	-	0.0063	16.2	22.1	0.011	15.5	15.3	1.4	1	0	0	1	1	1	1	Mucin-like	glycoprotein
SpoIIIAH	PF12685.2	gi|379004202|ref|YP_005259874.1|	-	0.019	14.4	0.8	0.026	14.0	0.5	1.2	1	0	0	1	1	1	0	SpoIIIAH-like	protein
DUF1180	PF06679.7	gi|379004202|ref|YP_005259874.1|	-	4.7	7.0	12.0	2.9	7.7	2.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1180)
MGC-24	PF05283.6	gi|379004202|ref|YP_005259874.1|	-	8.8	6.0	19.6	17	5.1	13.6	1.5	1	0	0	1	1	1	0	Multi-glycosylated	core	protein	24	(MGC-24)
PaRep2b	PF07775.6	gi|379004203|ref|YP_005259875.1|	-	1.9e-88	296.9	10.5	1.1e-46	159.1	2.3	2.0	1	1	0	2	2	2	2	PaRep2b	protein
DUF1152	PF06626.7	gi|379004204|ref|YP_005259876.1|	-	3.7e-108	361.1	0.5	4.2e-108	360.9	0.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1152)
DUF4190	PF13828.1	gi|379004205|ref|YP_005259877.1|	-	1.3	8.6	21.8	2.5	7.7	9.6	2.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4190)
YtpI	PF14007.1	gi|379004205|ref|YP_005259877.1|	-	1.4	8.9	9.9	0.42	10.5	1.4	2.7	1	1	1	2	2	2	0	YtpI-like	protein
Bax1-I	PF01027.15	gi|379004205|ref|YP_005259877.1|	-	1.8	8.1	12.8	2.3	7.7	8.9	1.1	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
YwiC	PF14256.1	gi|379004205|ref|YP_005259877.1|	-	3	7.9	10.7	0.43	10.6	4.0	1.9	1	1	1	2	2	2	0	YwiC-like	protein
OAD_gamma	PF04277.8	gi|379004205|ref|YP_005259877.1|	-	3.7	7.9	7.6	6.5	7.2	0.5	2.4	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
MHYT	PF03707.11	gi|379004205|ref|YP_005259877.1|	-	8.1	6.6	14.0	5.1	7.2	0.7	3.1	2	1	1	3	3	3	0	Bacterial	signalling	protein	N	terminal	repeat
Band_7_1	PF13421.1	gi|379004206|ref|YP_005259878.1|	-	4.5e-33	114.5	0.0	6.5e-33	114.0	0.0	1.2	1	0	0	1	1	1	1	SPFH	domain-Band	7	family
Band_7	PF01145.20	gi|379004206|ref|YP_005259878.1|	-	7.6e-18	65.0	0.2	1.1e-17	64.5	0.1	1.3	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
zf-ribbon_3	PF13248.1	gi|379004206|ref|YP_005259878.1|	-	5.2e-17	60.4	17.3	6.5e-09	34.7	4.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379004206|ref|YP_005259878.1|	-	1e-14	53.4	15.5	1.1e-07	31.0	3.0	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|379004206|ref|YP_005259878.1|	-	1.6e-13	50.2	11.4	2.7e-13	49.4	7.9	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-RanBP	PF00641.13	gi|379004206|ref|YP_005259878.1|	-	8.4e-06	24.7	6.8	0.0043	16.1	0.8	2.2	2	0	0	2	2	2	2	Zn-finger	in	Ran	binding	protein	and	others
zf-DHHC	PF01529.15	gi|379004206|ref|YP_005259878.1|	-	2e-05	24.0	4.9	0.0013	18.2	0.3	2.2	1	1	1	2	2	2	2	DHHC	palmitoyltransferase
UPF0547	PF10571.4	gi|379004206|ref|YP_005259878.1|	-	0.0019	17.8	18.1	0.061	13.0	3.3	2.7	2	1	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
DUF35_N	PF12172.3	gi|379004206|ref|YP_005259878.1|	-	0.036	13.9	10.4	0.047	13.6	0.6	2.5	1	1	1	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-tcix	PF14952.1	gi|379004206|ref|YP_005259878.1|	-	0.072	12.4	12.8	0.16	11.3	1.8	2.4	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Nudix_N_2	PF14803.1	gi|379004206|ref|YP_005259878.1|	-	0.12	12.0	13.9	7	6.4	0.1	4.1	3	1	0	3	3	3	0	Nudix	N-terminal
BMF	PF15185.1	gi|379004206|ref|YP_005259878.1|	-	0.41	9.9	3.4	7.2	5.8	0.0	3.0	3	1	1	4	4	4	0	Bcl-2-modifying	factor,	apoptosis
OrfB_Zn_ribbon	PF07282.6	gi|379004206|ref|YP_005259878.1|	-	0.42	10.3	7.9	1.6	8.4	0.7	2.4	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-NADH-PPase	PF09297.6	gi|379004206|ref|YP_005259878.1|	-	5.6	6.5	12.4	8.1	6.0	0.2	4.1	3	1	1	4	4	4	0	NADH	pyrophosphatase	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|379004206|ref|YP_005259878.1|	-	7	6.0	14.3	11	5.4	0.3	3.4	1	1	2	3	3	3	0	TFIIB	zinc-binding
Ribosomal_L32p	PF01783.18	gi|379004206|ref|YP_005259878.1|	-	9.2	6.5	7.3	17	5.6	1.6	2.4	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
Zip	PF02535.17	gi|379004207|ref|YP_005259879.1|	-	2.8e-22	79.1	23.2	9.9e-22	77.3	6.3	2.8	1	1	2	3	3	3	2	ZIP	Zinc	transporter
E1-E2_ATPase	PF00122.15	gi|379004207|ref|YP_005259879.1|	-	0.017	14.1	5.3	0.13	11.2	2.5	2.5	1	1	0	1	1	1	0	E1-E2	ATPase
Ni_hydr_CYTB	PF01292.15	gi|379004209|ref|YP_005259881.1|	-	1.9e-05	24.1	0.2	2.3e-05	23.8	0.2	1.1	1	0	0	1	1	1	1	Prokaryotic	cytochrome	b561
Cytochrom_B_N	PF00033.14	gi|379004209|ref|YP_005259881.1|	-	0.00021	20.7	0.3	0.00026	20.4	0.2	1.2	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
DUF4405	PF14358.1	gi|379004209|ref|YP_005259881.1|	-	0.0017	18.4	4.3	0.0052	16.8	3.0	1.7	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4405)
Herpes_UL32	PF06070.6	gi|379004210|ref|YP_005259882.1|	-	0.0093	14.4	0.0	0.013	13.9	0.0	1.1	1	0	0	1	1	1	1	Herpesvirus	large	structural	phosphoprotein	UL32
UBN2_2	PF14227.1	gi|379004210|ref|YP_005259882.1|	-	0.012	15.1	0.0	0.025	14.1	0.0	1.5	1	1	0	1	1	1	0	gag-polypeptide	of	LTR	copia-type
Pab87_oct	PF13969.1	gi|379004210|ref|YP_005259882.1|	-	0.018	15.1	0.0	0.039	14.0	0.0	1.5	1	0	0	1	1	1	0	Pab87	octamerisation	domain
NPV_P10	PF05531.7	gi|379004210|ref|YP_005259882.1|	-	0.12	12.6	1.1	0.23	11.7	0.0	2.0	3	0	0	3	3	3	0	Nucleopolyhedrovirus	P10	protein
TetR_C_6	PF13977.1	gi|379004210|ref|YP_005259882.1|	-	0.48	10.4	5.2	0.7	9.9	0.3	2.5	2	1	0	2	2	2	0	Bacterial	transcriptional	repressor
Glyco_hydro_57	PF03065.10	gi|379004211|ref|YP_005259883.1|	-	0.03	13.2	0.0	0.033	13.0	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	57
Citrate_synt	PF00285.16	gi|379004212|ref|YP_005259884.1|	-	6e-125	416.6	0.0	6.7e-125	416.5	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
ACT_6	PF13740.1	gi|379004213|ref|YP_005259885.1|	-	5.2e-19	67.7	1.5	6.4e-19	67.4	1.1	1.0	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|379004213|ref|YP_005259885.1|	-	7.5e-13	47.6	2.6	9.6e-13	47.3	1.8	1.2	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|379004213|ref|YP_005259885.1|	-	2.4e-05	24.5	1.8	3.2e-05	24.1	1.3	1.3	1	0	0	1	1	1	1	ACT	domain
ACT_7	PF13840.1	gi|379004213|ref|YP_005259885.1|	-	7.5e-05	22.1	1.2	0.00012	21.5	0.8	1.4	1	0	0	1	1	1	1	ACT	domain
UPF0158	PF03682.8	gi|379004213|ref|YP_005259885.1|	-	0.048	13.2	0.0	0.052	13.1	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0158)
DUF711	PF05167.7	gi|379004214|ref|YP_005259886.1|	-	8.7e-140	465.9	1.1	1.1e-139	465.5	0.8	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
Fucose_iso_C	PF02952.12	gi|379004215|ref|YP_005259887.1|	-	1.9e-08	33.8	0.0	3.1e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	L-fucose	isomerase,	C-terminal	domain
Epimerase	PF01370.16	gi|379004216|ref|YP_005259888.1|	-	1.1e-12	47.9	0.0	1.3e-12	47.6	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|379004216|ref|YP_005259888.1|	-	6.2e-08	31.8	0.0	1.1e-07	31.1	0.0	1.5	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|379004216|ref|YP_005259888.1|	-	6.6e-07	29.5	0.0	1.3e-06	28.5	0.0	1.4	1	1	0	1	1	1	1	NADH(P)-binding
NAD_binding_4	PF07993.7	gi|379004216|ref|YP_005259888.1|	-	3.6e-05	22.8	0.0	0.0046	15.9	0.0	2.1	1	1	1	2	2	2	2	Male	sterility	protein
3Beta_HSD	PF01073.14	gi|379004216|ref|YP_005259888.1|	-	0.0094	14.6	0.0	0.05	12.2	0.0	2.2	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
adh_short	PF00106.20	gi|379004216|ref|YP_005259888.1|	-	0.12	12.2	0.0	1.1	9.1	0.0	2.3	2	1	0	2	2	2	0	short	chain	dehydrogenase
CarboxypepD_reg	PF13620.1	gi|379004217|ref|YP_005259889.1|	-	0.0039	17.2	0.0	0.066	13.2	0.0	2.2	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Arch_ATPase	PF01637.13	gi|379004218|ref|YP_005259890.1|	-	5e-62	209.6	0.0	6e-62	209.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_10	PF12846.2	gi|379004218|ref|YP_005259890.1|	-	0.0067	15.8	0.0	0.012	15.0	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
Zeta_toxin	PF06414.7	gi|379004218|ref|YP_005259890.1|	-	0.0068	15.5	0.0	0.012	14.7	0.0	1.3	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|379004218|ref|YP_005259890.1|	-	0.0097	15.9	0.1	0.024	14.6	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379004218|ref|YP_005259890.1|	-	0.027	14.6	0.0	0.043	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379004218|ref|YP_005259890.1|	-	0.073	13.2	0.0	0.2	11.8	0.0	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|379004218|ref|YP_005259890.1|	-	0.074	12.9	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|379004218|ref|YP_005259890.1|	-	0.094	12.1	0.0	1.5	8.1	0.0	2.3	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379004218|ref|YP_005259890.1|	-	0.14	12.3	0.0	0.29	11.3	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
MobB	PF03205.9	gi|379004218|ref|YP_005259890.1|	-	0.15	11.7	0.0	0.27	10.9	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTP_transf_2	PF01909.18	gi|379004219|ref|YP_005259891.1|	-	2.3e-11	43.8	0.7	3e-11	43.4	0.5	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379004219|ref|YP_005259891.1|	-	0.036	13.6	0.0	0.044	13.4	0.0	1.1	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
BolA	PF01722.13	gi|379004219|ref|YP_005259891.1|	-	0.037	13.9	0.0	0.051	13.5	0.0	1.2	1	0	0	1	1	1	0	BolA-like	protein
HEPN	PF05168.9	gi|379004220|ref|YP_005259892.1|	-	7.8e-25	87.0	0.7	9.1e-25	86.8	0.5	1.0	1	0	0	1	1	1	1	HEPN	domain
PaREP1	PF05942.6	gi|379004220|ref|YP_005259892.1|	-	0.17	11.7	1.4	0.21	11.4	0.9	1.3	1	1	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
DUF4398	PF14346.1	gi|379004220|ref|YP_005259892.1|	-	0.52	10.3	3.3	0.34	10.9	0.4	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
DUF4129	PF13559.1	gi|379004220|ref|YP_005259892.1|	-	1.8	8.5	6.2	0.38	10.7	1.9	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4129)
TPR_2	PF07719.12	gi|379004220|ref|YP_005259892.1|	-	3.5	7.7	6.8	1.3	9.1	0.3	3.4	2	1	2	4	4	4	0	Tetratricopeptide	repeat
DUF86	PF01934.12	gi|379004221|ref|YP_005259893.1|	-	1.1e-12	47.6	0.0	1.8e-12	46.9	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.18	gi|379004222|ref|YP_005259894.1|	-	0.018	15.3	0.0	0.026	14.8	0.0	1.2	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
PepSY_TM_1	PF13172.1	gi|379004223|ref|YP_005259895.1|	-	0.11	12.2	0.7	0.14	11.9	0.5	1.1	1	0	0	1	1	1	0	PepSY-associated	TM	helix
Ribosomal_S30AE	PF02482.14	gi|379004224|ref|YP_005259896.1|	-	0.067	13.6	0.1	4	7.9	0.0	2.5	1	1	1	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
Shadoo	PF14999.1	gi|379004227|ref|YP_005259899.1|	-	0.058	13.2	0.6	0.07	12.9	0.4	1.1	1	0	0	1	1	1	0	Shadow	of	prion	protein,	neuroprotective
CcdA	PF07362.7	gi|379004228|ref|YP_005259900.1|	-	0.00076	19.2	2.0	0.013	15.3	1.4	2.0	1	1	0	1	1	1	1	Post-segregation	antitoxin	CcdA
PRP1_N	PF06424.7	gi|379004228|ref|YP_005259900.1|	-	0.0017	18.6	0.3	0.0019	18.5	0.2	1.1	1	0	0	1	1	1	1	PRP1	splicing	factor,	N-terminal
PSK_trans_fac	PF07704.6	gi|379004228|ref|YP_005259900.1|	-	0.0044	17.6	1.8	0.0056	17.3	1.3	1.3	1	0	0	1	1	1	1	Rv0623-like	transcription	factor
DUF4208	PF13907.1	gi|379004228|ref|YP_005259900.1|	-	0.029	14.5	0.1	0.037	14.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4208)
Mo25	PF08569.6	gi|379004228|ref|YP_005259900.1|	-	0.053	12.5	0.1	0.055	12.5	0.1	1.0	1	0	0	1	1	1	0	Mo25-like
DUF2067	PF09840.4	gi|379004228|ref|YP_005259900.1|	-	0.075	12.5	3.4	0.097	12.1	2.3	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
RHH_1	PF01402.16	gi|379004228|ref|YP_005259900.1|	-	0.1	12.5	6.3	0.35	10.8	0.2	2.4	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
ECM11	PF15463.1	gi|379004228|ref|YP_005259900.1|	-	0.1	12.8	1.6	0.13	12.5	1.1	1.2	1	0	0	1	1	1	0	Extracellular	mutant	protein	11
MCR_beta	PF02241.13	gi|379004228|ref|YP_005259900.1|	-	0.12	11.6	0.0	0.13	11.4	0.0	1.1	1	0	0	1	1	1	0	Methyl-coenzyme	M	reductase	beta	subunit,	C-terminal	domain
DUF4145	PF13643.1	gi|379004228|ref|YP_005259900.1|	-	0.12	12.2	0.2	0.13	12.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4145)
DUF973	PF06157.6	gi|379004229|ref|YP_005259901.1|	-	0.012	14.5	0.5	0.02	13.8	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
PaREP1	PF05942.6	gi|379004230|ref|YP_005259902.1|	-	2.5e-23	82.1	2.0	3.1e-23	81.8	1.4	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004230|ref|YP_005259902.1|	-	0.025	14.4	0.6	0.048	13.5	0.2	1.7	2	1	0	2	2	2	0	HEPN	domain
NYD-SP28_assoc	PF14775.1	gi|379004231|ref|YP_005259903.1|	-	0.0037	16.9	3.3	0.0048	16.5	0.6	2.0	2	0	0	2	2	2	1	Sperm	tail	C-terminal	domain
MethyTransf_Reg	PF10119.4	gi|379004231|ref|YP_005259903.1|	-	0.092	13.2	0.1	0.1	13.0	0.1	1.1	1	0	0	1	1	1	0	Predicted	methyltransferase	regulatory	domain
NTP_transf_5	PF14907.1	gi|379004232|ref|YP_005259904.1|	-	0.042	13.1	0.0	0.23	10.7	0.0	1.9	1	1	0	1	1	1	0	Uncharacterised	nucleotidyltransferase
RNA_POL_M_15KD	PF02150.11	gi|379004232|ref|YP_005259904.1|	-	0.14	11.8	0.2	0.24	11.0	0.1	1.4	1	0	0	1	1	1	0	RNA	polymerases	M/15	Kd	subunit
DUF1626	PF07788.6	gi|379004233|ref|YP_005259905.1|	-	4.1e-18	64.9	0.2	6.5e-18	64.2	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1626)
Matrilin_ccoil	PF10393.4	gi|379004233|ref|YP_005259905.1|	-	0.024	13.9	0.0	0.05	12.9	0.0	1.5	1	0	0	1	1	1	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
DUF3235	PF11574.3	gi|379004233|ref|YP_005259905.1|	-	0.35	11.1	2.3	0.64	10.2	0.0	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3235)
DUF4129	PF13559.1	gi|379004234|ref|YP_005259906.1|	-	0.051	13.5	0.3	0.051	13.5	0.2	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4129)
NTP_transf_3	PF12804.2	gi|379004236|ref|YP_005259908.1|	-	5.6e-15	55.7	0.2	8.1e-15	55.2	0.1	1.4	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
DUF1015	PF06245.6	gi|379004236|ref|YP_005259908.1|	-	0.0058	15.1	1.5	0.13	10.7	0.0	2.4	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF1015)
ParBc	PF02195.13	gi|379004236|ref|YP_005259908.1|	-	0.011	15.8	0.0	0.048	13.7	0.0	1.9	1	1	1	2	2	2	0	ParB-like	nuclease	domain
CobA_CobO_BtuR	PF02572.10	gi|379004237|ref|YP_005259909.1|	-	6.8e-28	97.4	0.9	9.2e-15	54.6	0.0	2.0	1	1	1	2	2	2	2	ATP:corrinoid	adenosyltransferase	BtuR/CobO/CobP
CbiA	PF01656.18	gi|379004237|ref|YP_005259909.1|	-	0.013	14.9	2.2	0.049	13.0	1.5	1.8	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
IstB_IS21	PF01695.12	gi|379004237|ref|YP_005259909.1|	-	0.025	14.0	0.9	0.36	10.2	0.2	2.2	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Herpes_ori_bp	PF02399.10	gi|379004237|ref|YP_005259909.1|	-	0.089	10.7	0.0	0.11	10.4	0.0	1.1	1	0	0	1	1	1	0	Origin	of	replication	binding	protein
CbiZ	PF01955.13	gi|379004238|ref|YP_005259910.1|	-	1.2e-34	119.7	0.0	1.6e-34	119.3	0.0	1.1	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
DBI_PRT	PF02277.12	gi|379004239|ref|YP_005259911.1|	-	6.4e-27	94.5	0.5	7.5e-27	94.2	0.3	1.1	1	0	0	1	1	1	1	Phosphoribosyltransferase
ATP_bind_4	PF01902.12	gi|379004240|ref|YP_005259912.1|	-	6.6e-21	74.6	0.1	8.1e-21	74.3	0.1	1.1	1	0	0	1	1	1	1	ATP-binding	region
DUF460	PF04312.8	gi|379004240|ref|YP_005259912.1|	-	0.0045	16.5	0.0	0.0068	15.9	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
ADH_zinc_N	PF00107.21	gi|379004240|ref|YP_005259912.1|	-	0.079	12.5	0.7	11	5.5	0.1	2.4	2	0	0	2	2	2	0	Zinc-binding	dehydrogenase
Asn_synthase	PF00733.16	gi|379004241|ref|YP_005259913.1|	-	1.5e-24	86.9	0.2	2.8e-16	59.7	0.0	2.1	2	0	0	2	2	2	2	Asparagine	synthase
zf-ribbon_3	PF13248.1	gi|379004241|ref|YP_005259913.1|	-	0.012	14.8	8.6	0.014	14.6	4.6	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
tRNA_Me_trans	PF03054.11	gi|379004241|ref|YP_005259913.1|	-	0.094	11.2	0.1	0.14	10.6	0.1	1.2	1	0	0	1	1	1	0	tRNA	methyl	transferase
Ribosomal_L32p	PF01783.18	gi|379004241|ref|YP_005259913.1|	-	0.11	12.7	0.3	0.69	10.1	0.1	2.1	2	0	0	2	2	2	0	Ribosomal	L32p	protein	family
UPF0547	PF10571.4	gi|379004241|ref|YP_005259913.1|	-	0.13	12.0	3.6	5.7	6.7	0.0	2.8	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
BON	PF04972.12	gi|379004241|ref|YP_005259913.1|	-	0.53	10.0	2.3	3.3	7.5	0.4	2.2	2	0	0	2	2	2	0	BON	domain
zinc_ribbon_2	PF13240.1	gi|379004241|ref|YP_005259913.1|	-	3.8	7.1	6.7	13	5.4	0.4	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
Aminotran_1_2	PF00155.16	gi|379004242|ref|YP_005259914.1|	-	2.5e-19	69.4	0.0	2.9e-18	65.9	0.0	2.1	2	1	0	2	2	2	1	Aminotransferase	class	I	and	II
DUF2617	PF10936.3	gi|379004242|ref|YP_005259914.1|	-	0.12	11.9	0.0	0.47	10.0	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF2617
CobS	PF02654.10	gi|379004243|ref|YP_005259915.1|	-	9.9e-32	110.3	3.8	1.3e-31	110.0	2.7	1.1	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
CobD_Cbib	PF03186.8	gi|379004244|ref|YP_005259916.1|	-	4.2e-39	134.3	9.4	7.3e-39	133.5	6.5	1.4	1	1	0	1	1	1	1	CobD/Cbib	protein
TP_methylase	PF00590.15	gi|379004246|ref|YP_005259918.1|	-	1.5e-47	161.9	1.9	2e-47	161.6	1.3	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.15	gi|379004247|ref|YP_005259919.1|	-	1.6e-28	99.8	1.5	2e-28	99.5	1.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
HDA2-3	PF11496.3	gi|379004247|ref|YP_005259919.1|	-	0.13	11.0	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	Class	II	histone	deacetylase	complex	subunits	2	and	3
DUF3922	PF13059.1	gi|379004247|ref|YP_005259919.1|	-	0.13	12.4	0.0	0.3	11.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3992)
Methyltransf_18	PF12847.2	gi|379004248|ref|YP_005259920.1|	-	4.2e-13	49.8	0.0	6e-13	49.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379004248|ref|YP_005259920.1|	-	9.7e-09	35.2	0.4	1.5e-08	34.6	0.3	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|379004248|ref|YP_005259920.1|	-	2.6e-08	33.6	0.2	4.7e-08	32.8	0.1	1.3	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_3	PF01596.12	gi|379004248|ref|YP_005259920.1|	-	3.5e-07	29.5	0.0	4.8e-07	29.0	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
MTS	PF05175.9	gi|379004248|ref|YP_005259920.1|	-	4.8e-07	29.3	0.0	8.1e-07	28.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_24	PF13578.1	gi|379004248|ref|YP_005259920.1|	-	3.5e-06	27.7	0.0	7.1e-06	26.8	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|379004248|ref|YP_005259920.1|	-	8.6e-06	25.2	0.0	1.3e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_31	PF13847.1	gi|379004248|ref|YP_005259920.1|	-	1e-05	25.1	0.0	1.5e-05	24.6	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|379004248|ref|YP_005259920.1|	-	1e-05	25.2	0.0	1.5e-05	24.6	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_15	PF09445.5	gi|379004248|ref|YP_005259920.1|	-	3.8e-05	23.3	0.0	5.4e-05	22.8	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
DOT1	PF08123.8	gi|379004248|ref|YP_005259920.1|	-	7.9e-05	22.0	0.0	0.00011	21.5	0.0	1.1	1	0	0	1	1	1	1	Histone	methylation	protein	DOT1
RrnaAD	PF00398.15	gi|379004248|ref|YP_005259920.1|	-	0.00012	21.1	0.0	0.00016	20.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|379004248|ref|YP_005259920.1|	-	0.00019	20.6	0.0	0.00029	20.0	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Met_10	PF02475.11	gi|379004248|ref|YP_005259920.1|	-	0.0011	18.5	0.0	0.0014	18.2	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
CMAS	PF02353.15	gi|379004248|ref|YP_005259920.1|	-	0.0062	15.6	0.1	0.0067	15.5	0.0	1.2	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Ubie_methyltran	PF01209.13	gi|379004248|ref|YP_005259920.1|	-	0.017	14.2	0.0	0.02	13.9	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|379004248|ref|YP_005259920.1|	-	0.023	15.0	0.0	0.039	14.3	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379004248|ref|YP_005259920.1|	-	0.037	14.5	0.0	0.1	13.1	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Nol1_Nop2_Fmu	PF01189.12	gi|379004248|ref|YP_005259920.1|	-	0.051	12.9	0.0	0.07	12.5	0.0	1.2	1	0	0	1	1	1	0	NOL1/NOP2/sun	family
GCD14	PF08704.5	gi|379004248|ref|YP_005259920.1|	-	0.11	11.9	0.0	0.15	11.5	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_4	PF02390.12	gi|379004248|ref|YP_005259920.1|	-	0.11	11.5	0.0	0.16	11.0	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
Methyltransf_32	PF13679.1	gi|379004248|ref|YP_005259920.1|	-	0.12	12.0	0.0	0.17	11.5	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_5	PF01795.14	gi|379004248|ref|YP_005259920.1|	-	0.13	11.5	0.0	0.18	11.0	0.0	1.2	1	0	0	1	1	1	0	MraW	methylase	family
CbiD	PF01888.12	gi|379004249|ref|YP_005259921.1|	-	2.6e-64	216.7	4.1	4.2e-64	216.0	2.8	1.3	1	0	0	1	1	1	1	CbiD
PK_C	PF02887.11	gi|379004249|ref|YP_005259921.1|	-	0.26	10.8	4.7	16	5.0	0.0	3.6	4	0	0	4	4	4	0	Pyruvate	kinase,	alpha/beta	domain
TP_methylase	PF00590.15	gi|379004250|ref|YP_005259922.1|	-	8.2e-33	113.8	2.9	9.4e-33	113.6	2.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
CbiC	PF02570.10	gi|379004251|ref|YP_005259923.1|	-	3.1e-37	127.9	2.3	5.3e-37	127.1	1.6	1.4	1	0	0	1	1	1	1	Precorrin-8X	methylmutase
CbiX	PF01903.12	gi|379004251|ref|YP_005259923.1|	-	5.5e-16	58.5	0.0	1.4e-15	57.2	0.0	1.7	1	0	0	1	1	1	1	CbiX
Syndecan	PF01034.15	gi|379004252|ref|YP_005259924.1|	-	1.1	9.0	3.4	1	9.0	0.1	2.4	2	0	0	2	2	2	0	Syndecan	domain
CbtB	PF09489.5	gi|379004253|ref|YP_005259925.1|	-	0.00079	19.2	0.6	0.0036	17.1	0.0	2.0	2	0	0	2	2	2	1	Probable	cobalt	transporter	subunit	(CbtB)
TP_methylase	PF00590.15	gi|379004254|ref|YP_005259926.1|	-	8.2e-36	123.6	0.1	9.3e-36	123.5	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Glyco_tranf_2_4	PF13704.1	gi|379004254|ref|YP_005259926.1|	-	0.0076	16.5	0.0	0.019	15.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
DUF3234	PF11572.3	gi|379004254|ref|YP_005259926.1|	-	0.07	13.2	0.0	0.13	12.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3234)
CbiG_N	PF11760.3	gi|379004255|ref|YP_005259927.1|	-	2.4e-28	97.6	0.0	6.4e-28	96.2	0.0	1.7	1	0	0	1	1	1	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.11	gi|379004255|ref|YP_005259927.1|	-	4.9e-16	59.0	1.2	1.5e-15	57.5	0.7	1.9	2	0	0	2	2	2	1	Cobalamin	synthesis	G	C-terminus
NTP_transf_2	PF01909.18	gi|379004256|ref|YP_005259928.1|	-	3.6e-12	46.4	0.6	4.7e-12	46.0	0.4	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379004256|ref|YP_005259928.1|	-	0.0072	15.9	0.0	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|379004257|ref|YP_005259929.1|	-	5.8e-25	87.4	1.3	7.2e-25	87.1	0.9	1.0	1	0	0	1	1	1	1	HEPN	domain
TPR_11	PF13414.1	gi|379004257|ref|YP_005259929.1|	-	0.0061	16.1	0.2	0.011	15.3	0.1	1.4	1	0	0	1	1	1	1	TPR	repeat
TPR_2	PF07719.12	gi|379004257|ref|YP_005259929.1|	-	0.036	13.9	1.1	0.095	12.6	0.7	1.8	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|379004257|ref|YP_005259929.1|	-	0.08	12.5	0.2	0.17	11.5	0.1	1.6	1	0	0	1	1	1	0	Tetratricopeptide	repeat
AMP-binding	PF00501.23	gi|379004258|ref|YP_005259930.1|	-	5.7e-87	291.7	0.0	7.8e-87	291.3	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379004258|ref|YP_005259930.1|	-	3.7e-20	72.6	4.8	9.3e-20	71.3	3.3	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
YopD	PF05844.7	gi|379004258|ref|YP_005259930.1|	-	0.5	9.3	1.9	0.73	8.8	1.3	1.1	1	0	0	1	1	1	0	YopD	protein
Aldedh	PF00171.17	gi|379004259|ref|YP_005259931.1|	-	6e-153	509.4	0.1	6.7e-153	509.3	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Radical_SAM	PF04055.16	gi|379004259|ref|YP_005259931.1|	-	0.079	13.1	0.1	0.5	10.5	0.0	2.4	3	0	0	3	3	3	0	Radical	SAM	superfamily
HpaB_N	PF11794.3	gi|379004260|ref|YP_005259932.1|	-	2.4e-90	302.4	0.1	3.4e-90	302.0	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|379004260|ref|YP_005259932.1|	-	3.7e-62	208.7	0.0	5.2e-62	208.3	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
CBS	PF00571.23	gi|379004261|ref|YP_005259933.1|	-	1.3e-27	95.2	4.8	1.1e-13	50.6	0.2	2.1	2	0	0	2	2	2	2	CBS	domain
Fer2_3	PF13085.1	gi|379004262|ref|YP_005259934.1|	-	6.7e-30	103.1	0.1	7.5e-30	102.9	0.0	1.0	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2	PF00111.22	gi|379004262|ref|YP_005259934.1|	-	9.6e-09	34.8	0.4	1.7e-08	34.0	0.3	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|379004262|ref|YP_005259934.1|	-	1.7e-05	24.4	0.2	2.8e-05	23.8	0.1	1.2	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
DHODB_Fe-S_bind	PF10418.4	gi|379004262|ref|YP_005259934.1|	-	0.072	12.5	4.8	0.13	11.7	3.3	1.4	1	0	0	1	1	1	0	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
Pyr_redox_2	PF07992.9	gi|379004263|ref|YP_005259935.1|	-	2.9e-31	108.9	7.2	1.3e-13	51.3	0.2	3.9	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379004263|ref|YP_005259935.1|	-	3e-23	82.0	10.7	2.3e-19	69.5	2.2	3.5	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379004263|ref|YP_005259935.1|	-	1.5e-18	66.8	15.4	6.2e-08	31.9	0.2	4.1	4	0	0	4	4	4	4	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379004263|ref|YP_005259935.1|	-	1.8e-14	54.3	0.7	2.5e-09	37.5	0.0	3.1	2	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
K_oxygenase	PF13434.1	gi|379004263|ref|YP_005259935.1|	-	5.9e-08	32.0	1.6	2.4e-05	23.4	0.0	3.0	2	1	0	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
HI0933_like	PF03486.9	gi|379004263|ref|YP_005259935.1|	-	7.2e-08	31.3	6.5	0.042	12.3	0.2	4.2	4	1	1	5	5	5	3	HI0933-like	protein
NAD_binding_7	PF13241.1	gi|379004263|ref|YP_005259935.1|	-	2.1e-06	27.9	2.6	0.0012	19.0	0.3	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Trp_halogenase	PF04820.9	gi|379004263|ref|YP_005259935.1|	-	3.9e-06	25.7	9.6	0.0018	16.9	0.4	3.7	3	1	1	4	4	4	3	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|379004263|ref|YP_005259935.1|	-	4e-05	23.5	2.5	0.034	14.1	0.1	2.8	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.17	gi|379004263|ref|YP_005259935.1|	-	6.2e-05	22.0	12.6	0.0079	15.0	0.2	3.8	3	1	1	5	5	5	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|379004263|ref|YP_005259935.1|	-	9.6e-05	21.4	16.7	0.065	12.0	0.7	4.2	3	1	1	4	4	4	3	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|379004263|ref|YP_005259935.1|	-	0.00011	21.4	12.8	0.0027	16.8	1.2	3.1	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
3HCDH_N	PF02737.13	gi|379004263|ref|YP_005259935.1|	-	0.00045	19.9	2.9	0.0074	15.9	0.2	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|379004263|ref|YP_005259935.1|	-	0.00065	18.8	3.8	0.0029	16.7	0.4	2.2	2	0	0	2	2	2	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|379004263|ref|YP_005259935.1|	-	0.0007	18.6	3.8	0.033	13.1	0.1	2.6	2	1	1	3	3	3	2	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.16	gi|379004263|ref|YP_005259935.1|	-	0.0022	17.6	5.0	0.24	10.9	0.1	2.9	3	0	0	3	3	3	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|379004263|ref|YP_005259935.1|	-	0.0032	17.4	2.7	0.16	11.9	0.1	2.9	3	0	0	3	3	3	1	TrkA-N	domain
UDPG_MGDP_dh_N	PF03721.9	gi|379004263|ref|YP_005259935.1|	-	0.0051	16.2	0.9	0.012	14.9	0.1	2.0	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|379004263|ref|YP_005259935.1|	-	0.067	13.2	0.5	6.6	6.8	0.0	2.9	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
YajC	PF02699.10	gi|379004263|ref|YP_005259935.1|	-	0.16	11.6	1.2	5.9	6.6	0.0	2.4	2	0	0	2	2	2	0	Preprotein	translocase	subunit
ThiF	PF00899.16	gi|379004263|ref|YP_005259935.1|	-	0.26	11.1	1.7	0.6	9.9	0.2	2.1	2	0	0	2	2	2	0	ThiF	family
NAD_binding_9	PF13454.1	gi|379004263|ref|YP_005259935.1|	-	5.1	6.8	7.5	17	5.1	0.2	3.7	3	1	1	4	4	4	0	FAD-NAD(P)-binding
ThiS	PF02597.15	gi|379004264|ref|YP_005259936.1|	-	1.4e-12	47.8	0.0	1.7e-12	47.5	0.0	1.1	1	0	0	1	1	1	1	ThiS	family
TGS	PF02824.16	gi|379004264|ref|YP_005259936.1|	-	0.017	14.9	0.1	0.045	13.5	0.0	1.7	2	0	0	2	2	2	0	TGS	domain
COG2	PF06148.6	gi|379004264|ref|YP_005259936.1|	-	0.042	13.7	0.0	0.054	13.3	0.0	1.1	1	0	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Lactamase_B	PF00753.22	gi|379004265|ref|YP_005259937.1|	-	2.3e-21	76.3	1.1	3.1e-21	75.9	0.8	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|379004265|ref|YP_005259937.1|	-	6.8e-05	22.5	0.0	0.00011	21.8	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
TrmB	PF01978.14	gi|379004265|ref|YP_005259937.1|	-	0.15	11.7	0.2	2.8	7.7	0.0	2.7	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
SfsA	PF03749.8	gi|379004266|ref|YP_005259938.1|	-	7.9e-57	192.1	0.0	8.9e-57	192.0	0.0	1.0	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein
DUF1028	PF06267.7	gi|379004267|ref|YP_005259939.1|	-	6.2e-70	234.4	0.4	7.6e-70	234.2	0.3	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
PG_binding_2	PF08823.6	gi|379004267|ref|YP_005259939.1|	-	7.8e-27	93.1	0.2	1.7e-26	92.1	0.1	1.6	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
PG_binding_1	PF01471.13	gi|379004267|ref|YP_005259939.1|	-	0.00041	20.2	0.0	0.001	19.0	0.0	1.6	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
Lactamase_B	PF00753.22	gi|379004268|ref|YP_005259940.1|	-	8.7e-13	48.3	7.7	4.6e-12	46.0	5.3	1.9	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|379004268|ref|YP_005259940.1|	-	0.00028	20.4	0.0	0.00039	20.0	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PEP-utilizers_C	PF02896.13	gi|379004269|ref|YP_005259941.1|	-	3e-84	282.3	0.0	4.5e-84	281.8	0.0	1.2	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PPDK_N	PF01326.14	gi|379004269|ref|YP_005259941.1|	-	7e-54	183.0	0.0	3.8e-52	177.3	0.0	2.8	1	1	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers	PF00391.18	gi|379004269|ref|YP_005259941.1|	-	1.6e-22	78.8	0.5	3.6e-22	77.7	0.3	1.6	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Dioxygenase_N	PF04444.9	gi|379004269|ref|YP_005259941.1|	-	0.071	13.1	0.0	0.26	11.2	0.0	2.0	1	0	0	1	1	1	0	Catechol	dioxygenase	N	terminus
ATP_bind_4	PF01902.12	gi|379004272|ref|YP_005259944.1|	-	1e-49	168.9	0.1	1.1e-49	168.7	0.1	1.0	1	0	0	1	1	1	1	ATP-binding	region
RHH_1	PF01402.16	gi|379004272|ref|YP_005259944.1|	-	0.04	13.8	0.1	4.1	7.4	0.0	2.6	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Nif11	PF07862.6	gi|379004272|ref|YP_005259944.1|	-	0.25	11.3	0.7	0.65	9.9	0.0	2.0	3	0	0	3	3	3	0	Nitrogen	fixation	protein	of	unknown	function
Peptidase_M24	PF00557.19	gi|379004277|ref|YP_005259949.1|	-	1.8e-42	145.2	0.0	2.1e-42	145.0	0.0	1.0	1	0	0	1	1	1	1	Metallopeptidase	family	M24
CBS	PF00571.23	gi|379004278|ref|YP_005259950.1|	-	1.8e-15	56.4	0.6	1.7e-09	37.3	0.0	2.1	2	0	0	2	2	2	2	CBS	domain
CBS	PF00571.23	gi|379004279|ref|YP_005259951.1|	-	1.8e-17	62.8	0.1	6.7e-14	51.3	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
PEPcase_2	PF14010.1	gi|379004280|ref|YP_005259952.1|	-	1.7e-140	468.6	0.0	1.9e-140	468.4	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
PEPcase	PF00311.12	gi|379004280|ref|YP_005259952.1|	-	1.1e-06	26.8	0.0	1.7e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
HpcH_HpaI	PF03328.9	gi|379004280|ref|YP_005259952.1|	-	0.1	11.4	0.4	0.35	9.7	0.1	1.9	2	0	0	2	2	2	0	HpcH/HpaI	aldolase/citrate	lyase	family
Aldo_ket_red	PF00248.16	gi|379004281|ref|YP_005259953.1|	-	4.7e-77	258.5	0.0	5.5e-77	258.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RHS	PF03527.9	gi|379004281|ref|YP_005259953.1|	-	1.3	8.8	4.5	2.2	8.1	0.5	2.4	2	0	0	2	2	2	0	RHS	protein
Oxidored_q6	PF01058.17	gi|379004282|ref|YP_005259954.1|	-	5.7e-24	84.1	0.2	7.1e-24	83.8	0.2	1.1	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_30kDa	PF00329.14	gi|379004283|ref|YP_005259955.1|	-	1.7e-29	102.0	0.0	2.4e-29	101.5	0.0	1.2	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
MFS_1	PF07690.11	gi|379004284|ref|YP_005259956.1|	-	3.9e-41	140.9	90.1	4.8e-33	114.3	40.9	2.2	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|379004284|ref|YP_005259956.1|	-	0.43	8.6	31.6	0.12	10.5	6.9	2.2	2	0	0	2	2	2	0	Transmembrane	secretion	effector
TroA	PF01297.12	gi|379004285|ref|YP_005259957.1|	-	3.5e-13	49.3	0.3	9.2e-06	25.0	0.0	2.1	2	0	0	2	2	2	2	Periplasmic	solute	binding	protein	family
AdoHcyase_NAD	PF00670.16	gi|379004285|ref|YP_005259957.1|	-	0.08	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
PmbA_TldD	PF01523.11	gi|379004286|ref|YP_005259958.1|	-	4.7e-39	134.4	0.1	6.8e-39	133.8	0.1	1.2	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.11	gi|379004287|ref|YP_005259959.1|	-	5.9e-62	209.5	0.3	7.6e-62	209.2	0.2	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Exonuc_VII_S	PF02609.11	gi|379004287|ref|YP_005259959.1|	-	0.044	13.5	0.0	0.15	11.8	0.0	1.9	1	0	0	1	1	1	0	Exonuclease	VII	small	subunit
Aldo_ket_red	PF00248.16	gi|379004288|ref|YP_005259960.1|	-	4.1e-48	163.6	0.0	5.1e-48	163.3	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
RsmJ	PF04378.8	gi|379004288|ref|YP_005259960.1|	-	0.046	12.7	0.1	1.5	7.7	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	RNA	small	subunit	methyltransferase	D,	RsmJ
SicP-binding	PF09119.5	gi|379004288|ref|YP_005259960.1|	-	0.14	11.8	0.0	1.5	8.5	0.0	2.4	2	0	0	2	2	2	0	SicP	binding
DHDPS	PF00701.17	gi|379004290|ref|YP_005259962.1|	-	1.2e-58	197.9	0.0	1.5e-58	197.7	0.0	1.1	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Neurensin	PF14927.1	gi|379004290|ref|YP_005259962.1|	-	0.073	12.4	0.1	0.15	11.4	0.0	1.5	1	0	0	1	1	1	0	Neurensin
TYW3	PF02676.9	gi|379004291|ref|YP_005259963.1|	-	5.7e-41	139.8	0.0	7.5e-41	139.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	TYW3
HTH_24	PF13412.1	gi|379004292|ref|YP_005259964.1|	-	2.3e-06	26.9	0.0	5.2e-06	25.7	0.0	1.6	1	1	1	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379004292|ref|YP_005259964.1|	-	1.3e-05	24.7	0.0	2.3e-05	23.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_26	PF13443.1	gi|379004292|ref|YP_005259964.1|	-	0.0065	16.6	0.0	0.0097	16.0	0.0	1.3	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
FaeA	PF04703.7	gi|379004292|ref|YP_005259964.1|	-	0.022	14.9	0.1	0.068	13.3	0.0	1.8	1	1	1	2	2	2	0	FaeA-like	protein
HTH_20	PF12840.2	gi|379004292|ref|YP_005259964.1|	-	0.022	14.5	0.1	0.028	14.1	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379004292|ref|YP_005259964.1|	-	0.036	13.5	0.0	0.042	13.3	0.0	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
FeoC	PF09012.5	gi|379004292|ref|YP_005259964.1|	-	0.071	12.8	0.1	0.093	12.4	0.0	1.1	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_34	PF13601.1	gi|379004292|ref|YP_005259964.1|	-	0.11	12.6	0.0	0.16	12.0	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Adeno_E3_14_5	PF04834.7	gi|379004293|ref|YP_005259965.1|	-	0.31	11.4	2.1	0.65	10.4	1.5	1.5	1	0	0	1	1	1	0	Early	E3	14.5	kDa	protein
Med3	PF11593.3	gi|379004293|ref|YP_005259965.1|	-	2.8	7.1	5.6	4.4	6.4	3.9	1.3	1	0	0	1	1	1	0	Mediator	complex	subunit	3	fungal
Glycoprotein	PF03409.10	gi|379004293|ref|YP_005259965.1|	-	6.7	5.3	10.0	13	4.4	4.1	2.0	2	0	0	2	2	2	0	Transmembrane	glycoprotein
DUF3439	PF11921.3	gi|379004293|ref|YP_005259965.1|	-	9.5	5.9	12.8	0.92	9.2	5.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3439)
SurE	PF01975.12	gi|379004294|ref|YP_005259966.1|	-	8.6e-49	165.5	0.0	1.1e-48	165.2	0.0	1.1	1	0	0	1	1	1	1	Survival	protein	SurE
Ribosomal_S10	PF00338.17	gi|379004295|ref|YP_005259967.1|	-	2.6e-28	97.7	0.0	2.9e-28	97.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
eRF1_2	PF03464.10	gi|379004296|ref|YP_005259968.1|	-	5.5e-31	107.6	0.1	1.1e-30	106.6	0.0	1.5	2	0	0	2	2	2	1	eRF1	domain	2
eRF1_1	PF03463.10	gi|379004296|ref|YP_005259968.1|	-	6.2e-16	58.1	0.0	1e-15	57.4	0.0	1.3	1	0	0	1	1	1	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|379004296|ref|YP_005259968.1|	-	4.3e-11	43.0	2.5	3.7e-10	40.0	1.7	2.5	1	1	0	1	1	1	1	eRF1	domain	3
Ribosomal_L7Ae	PF01248.21	gi|379004296|ref|YP_005259968.1|	-	5e-05	22.7	0.1	0.00011	21.5	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
DUF4450	PF14614.1	gi|379004296|ref|YP_005259968.1|	-	0.059	12.5	0.1	0.15	11.2	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4450)
SMC_N	PF02463.14	gi|379004297|ref|YP_005259969.1|	-	1.3e-22	80.1	0.0	4.3e-22	78.4	0.0	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379004297|ref|YP_005259969.1|	-	5e-19	69.4	32.0	5.3e-10	39.9	22.2	4.5	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|379004297|ref|YP_005259969.1|	-	2.3e-15	56.1	19.9	3.2e-09	35.8	2.7	3.6	2	1	0	3	3	3	3	AAA	domain
AAA_21	PF13304.1	gi|379004297|ref|YP_005259969.1|	-	1.4e-12	48.1	0.1	3.3e-06	27.2	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|379004297|ref|YP_005259969.1|	-	3.9e-08	33.6	0.6	0.0071	16.6	0.0	3.5	2	1	0	3	3	2	2	ABC	transporter
AAA_29	PF13555.1	gi|379004297|ref|YP_005259969.1|	-	5.4e-07	29.0	0.0	9.4e-07	28.2	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|379004297|ref|YP_005259969.1|	-	2.6e-06	26.7	0.0	0.0018	17.4	0.0	2.7	3	0	0	3	3	2	1	AAA	ATPase	domain
DUF3584	PF12128.3	gi|379004297|ref|YP_005259969.1|	-	4.7e-05	20.9	41.6	0.0013	16.2	12.9	3.4	3	1	0	3	3	3	2	Protein	of	unknown	function	(DUF3584)
SbcCD_C	PF13558.1	gi|379004297|ref|YP_005259969.1|	-	8e-05	22.4	0.1	0.00033	20.4	0.0	2.1	2	0	0	2	2	1	1	Putative	exonuclease	SbcCD,	C	subunit
Fib_alpha	PF08702.5	gi|379004297|ref|YP_005259969.1|	-	0.00012	22.2	20.2	0.0056	16.8	1.3	4.0	2	1	2	4	4	4	2	Fibrinogen	alpha/beta	chain	family
IncA	PF04156.9	gi|379004297|ref|YP_005259969.1|	-	0.00016	21.3	65.2	0.11	12.0	13.0	4.6	2	2	2	4	4	4	3	IncA	protein
Spc7	PF08317.6	gi|379004297|ref|YP_005259969.1|	-	0.00017	20.3	41.4	0.0021	16.8	2.6	4.1	2	2	2	4	4	4	3	Spc7	kinetochore	protein
Baculo_PEP_C	PF04513.7	gi|379004297|ref|YP_005259969.1|	-	0.00079	19.2	5.8	0.2	11.4	0.2	5.0	4	1	0	4	4	4	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin-6_N	PF09177.6	gi|379004297|ref|YP_005259969.1|	-	0.001	19.4	30.5	0.3	11.5	3.7	6.2	2	2	4	6	6	6	1	Syntaxin	6,	N-terminal
Flagellin_C	PF00700.16	gi|379004297|ref|YP_005259969.1|	-	0.0029	17.7	4.3	0.045	13.9	0.1	3.6	2	1	1	3	3	3	1	Bacterial	flagellin	C-terminal	helical	region
Arch_ATPase	PF01637.13	gi|379004297|ref|YP_005259969.1|	-	0.0077	15.9	0.0	0.0077	15.9	0.0	3.8	2	1	1	3	3	3	1	Archaeal	ATPase
Nup54	PF13874.1	gi|379004297|ref|YP_005259969.1|	-	0.0085	15.7	10.2	0.0085	15.7	7.1	4.6	3	1	2	5	5	4	1	Nucleoporin	complex	subunit	54
AAA	PF00004.24	gi|379004297|ref|YP_005259969.1|	-	0.011	15.9	1.7	0.16	12.1	0.1	3.3	2	1	0	2	2	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF948	PF06103.6	gi|379004297|ref|YP_005259969.1|	-	0.019	14.8	4.3	3.3	7.6	0.1	4.1	3	1	0	4	4	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Rad50_zn_hook	PF04423.9	gi|379004297|ref|YP_005259969.1|	-	0.021	14.2	0.1	0.021	14.2	0.0	6.9	7	0	0	7	7	5	0	Rad50	zinc	hook	motif
MscS_porin	PF12795.2	gi|379004297|ref|YP_005259969.1|	-	0.022	14.1	46.7	0.37	10.0	0.9	5.0	3	2	2	5	5	5	0	Mechanosensitive	ion	channel	porin	domain
Spectrin	PF00435.16	gi|379004297|ref|YP_005259969.1|	-	0.028	14.6	36.8	0.35	11.1	7.4	5.1	3	1	2	5	5	5	0	Spectrin	repeat
AAA_25	PF13481.1	gi|379004297|ref|YP_005259969.1|	-	0.031	13.6	0.0	0.031	13.6	0.0	4.2	3	1	2	5	5	5	0	AAA	domain
Prefoldin_2	PF01920.15	gi|379004297|ref|YP_005259969.1|	-	0.043	13.5	0.3	0.043	13.5	0.2	6.6	5	2	1	7	7	6	0	Prefoldin	subunit
Snapin_Pallidin	PF14712.1	gi|379004297|ref|YP_005259969.1|	-	0.048	13.9	35.2	0.32	11.3	2.5	7.0	3	2	2	6	6	6	0	Snapin/Pallidin
APG6	PF04111.7	gi|379004297|ref|YP_005259969.1|	-	0.056	12.4	45.2	0.22	10.5	6.4	3.7	2	1	2	4	4	4	0	Autophagy	protein	Apg6
RNA_helicase	PF00910.17	gi|379004297|ref|YP_005259969.1|	-	0.058	13.5	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Laminin_I	PF06008.9	gi|379004297|ref|YP_005259969.1|	-	0.065	12.5	41.6	0.13	11.5	2.6	3.7	2	2	1	3	3	3	0	Laminin	Domain	I
DNA_ligase_ZBD	PF03119.11	gi|379004297|ref|YP_005259969.1|	-	0.075	12.7	1.4	0.22	11.2	1.0	1.9	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
NEP	PF10167.4	gi|379004297|ref|YP_005259969.1|	-	0.081	12.6	0.2	18	5.0	0.0	3.5	4	0	0	4	4	4	0	Uncharacterised	conserved	protein
Laminin_II	PF06009.7	gi|379004297|ref|YP_005259969.1|	-	0.098	12.4	24.5	0.14	11.9	1.9	4.4	3	2	1	4	4	4	0	Laminin	Domain	II
Lebercilin	PF15619.1	gi|379004297|ref|YP_005259969.1|	-	0.11	11.9	62.4	0.054	12.9	10.9	4.7	3	1	1	4	4	4	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
AAA_24	PF13479.1	gi|379004297|ref|YP_005259969.1|	-	0.17	11.4	0.0	0.4	10.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Reo_sigmaC	PF04582.7	gi|379004297|ref|YP_005259969.1|	-	0.19	10.8	5.6	14	4.7	0.7	4.0	2	1	1	4	4	3	0	Reovirus	sigma	C	capsid	protein
DUF1569	PF07606.6	gi|379004297|ref|YP_005259969.1|	-	0.25	11.2	2.6	0.34	10.8	0.0	2.5	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF1569)
GAS	PF13851.1	gi|379004297|ref|YP_005259969.1|	-	0.29	10.3	53.4	0.041	13.0	4.7	4.8	2	2	2	4	4	4	0	Growth-arrest	specific	micro-tubule	binding
Tropomyosin_1	PF12718.2	gi|379004297|ref|YP_005259969.1|	-	0.36	10.6	60.1	0.45	10.3	15.4	4.5	2	2	2	4	4	4	0	Tropomyosin	like
DUF1664	PF07889.7	gi|379004297|ref|YP_005259969.1|	-	0.42	10.4	19.1	3.3	7.5	0.2	5.7	5	1	1	6	6	6	0	Protein	of	unknown	function	(DUF1664)
AAA_22	PF13401.1	gi|379004297|ref|YP_005259969.1|	-	0.63	10.1	0.0	0.63	10.1	0.0	4.3	3	1	0	3	3	3	0	AAA	domain
TPR_MLP1_2	PF07926.7	gi|379004297|ref|YP_005259969.1|	-	0.83	9.4	44.4	6.6	6.4	16.4	4.6	2	2	1	3	3	3	0	TPR/MLP1/MLP2-like	protein
Phage_GP20	PF06810.6	gi|379004297|ref|YP_005259969.1|	-	1.2	8.5	0.0	1.2	8.5	0.0	4.9	2	2	3	5	5	5	0	Phage	minor	structural	protein	GP20
AAA_17	PF13207.1	gi|379004297|ref|YP_005259969.1|	-	1.6	9.5	0.0	1.6	9.5	0.0	4.6	2	1	0	2	2	1	0	AAA	domain
Exonuc_VII_L	PF02601.10	gi|379004297|ref|YP_005259969.1|	-	1.7	7.7	27.5	1.5	7.9	10.5	2.4	1	1	1	2	2	2	0	Exonuclease	VII,	large	subunit
DUF3606	PF12244.3	gi|379004297|ref|YP_005259969.1|	-	1.7	8.2	9.2	0.99	9.0	0.9	3.4	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF3606)
DUF4200	PF13863.1	gi|379004297|ref|YP_005259969.1|	-	1.8	8.5	61.2	0.18	11.7	1.2	5.7	4	1	2	6	6	6	0	Domain	of	unknown	function	(DUF4200)
DUF4298	PF14131.1	gi|379004297|ref|YP_005259969.1|	-	1.9	8.4	21.9	1.3	8.9	0.1	6.1	5	2	1	6	6	5	0	Domain	of	unknown	function	(DUF4298)
MbeB_N	PF04837.7	gi|379004297|ref|YP_005259969.1|	-	2.7	8.1	13.9	0.15	12.1	1.5	4.3	3	1	0	3	3	3	0	MbeB-like,	N-term	conserved	region
DUF342	PF03961.8	gi|379004297|ref|YP_005259969.1|	-	4.7	5.5	34.9	0.12	10.7	1.2	4.1	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF342)
CENP-F_leu_zip	PF10473.4	gi|379004297|ref|YP_005259969.1|	-	6.2	6.6	61.0	1.3	8.9	0.9	4.9	2	2	2	4	4	4	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
WXG100	PF06013.7	gi|379004297|ref|YP_005259969.1|	-	8.7	6.4	15.7	58	3.7	0.6	5.6	6	1	0	6	6	4	0	Proteins	of	100	residues	with	WXG
Mnd1	PF03962.10	gi|379004297|ref|YP_005259969.1|	-	9	5.9	42.4	0.39	10.3	5.4	4.4	2	2	2	4	4	4	0	Mnd1	family
Metallophos_2	PF12850.2	gi|379004298|ref|YP_005259970.1|	-	3.5e-10	39.9	0.0	5.5e-10	39.2	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|379004298|ref|YP_005259970.1|	-	3.5e-08	33.0	0.0	6.6e-08	32.1	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
DUF87	PF01935.12	gi|379004299|ref|YP_005259971.1|	-	1.5e-39	136.1	0.0	2.1e-39	135.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|379004299|ref|YP_005259971.1|	-	1.2e-20	74.2	0.0	1.3e-19	70.8	0.0	2.0	1	1	0	1	1	1	1	AAA-like	domain
HAS-barrel	PF09378.5	gi|379004299|ref|YP_005259971.1|	-	1.9e-09	37.3	3.0	3.1e-09	36.6	0.3	2.6	3	0	0	3	3	2	1	HAS	barrel	domain
TrwB_AAD_bind	PF10412.4	gi|379004299|ref|YP_005259971.1|	-	8.4e-08	31.2	0.0	7.1e-06	24.8	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|379004299|ref|YP_005259971.1|	-	9.1e-08	31.8	0.1	2.8e-05	23.6	0.0	2.4	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
T4SS-DNA_transf	PF02534.9	gi|379004299|ref|YP_005259971.1|	-	3.3e-05	22.6	0.1	0.00011	20.9	0.0	1.7	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
Zot	PF05707.7	gi|379004299|ref|YP_005259971.1|	-	5.9e-05	22.6	0.0	0.04	13.3	0.0	2.3	2	0	0	2	2	2	2	Zonular	occludens	toxin	(Zot)
DUF853	PF05872.7	gi|379004299|ref|YP_005259971.1|	-	6.7e-05	21.4	0.0	0.22	9.8	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
ResIII	PF04851.10	gi|379004299|ref|YP_005259971.1|	-	0.00017	21.4	0.0	0.00099	18.9	0.0	2.0	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|379004299|ref|YP_005259971.1|	-	0.0076	15.9	0.0	0.021	14.5	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
CbiA	PF01656.18	gi|379004299|ref|YP_005259971.1|	-	0.026	13.9	0.0	0.082	12.2	0.0	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_22	PF13401.1	gi|379004299|ref|YP_005259971.1|	-	0.027	14.5	0.0	2	8.5	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|379004299|ref|YP_005259971.1|	-	0.04	13.6	0.1	0.11	12.2	0.1	1.8	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DEAD	PF00270.24	gi|379004299|ref|YP_005259971.1|	-	0.06	12.8	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	DEAD/DEAH	box	helicase
T2SE	PF00437.15	gi|379004299|ref|YP_005259971.1|	-	0.11	11.4	0.0	0.18	10.6	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NurA	PF09376.5	gi|379004300|ref|YP_005259972.1|	-	5.9e-46	156.9	0.2	7.3e-46	156.6	0.2	1.1	1	0	0	1	1	1	1	NurA	domain
AAA_5	PF07728.9	gi|379004301|ref|YP_005259973.1|	-	4.1e-26	91.3	0.0	1.2e-25	89.8	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|379004301|ref|YP_005259973.1|	-	5.3e-06	26.6	0.1	7.2e-05	23.0	0.0	2.6	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_3	PF07726.6	gi|379004301|ref|YP_005259973.1|	-	0.00051	19.6	0.0	0.0013	18.3	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|379004301|ref|YP_005259973.1|	-	0.0017	17.8	0.0	0.0033	16.8	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|379004301|ref|YP_005259973.1|	-	0.0027	16.8	0.0	0.0078	15.3	0.0	1.7	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|379004301|ref|YP_005259973.1|	-	0.006	16.5	0.0	0.015	15.3	0.0	1.8	2	1	0	2	2	2	1	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|379004301|ref|YP_005259973.1|	-	0.017	14.1	1.9	1.8	7.5	0.1	3.0	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
MCM	PF00493.18	gi|379004301|ref|YP_005259973.1|	-	0.03	13.1	0.1	0.23	10.1	0.0	2.0	2	0	0	2	2	2	0	MCM2/3/5	family
AAA_19	PF13245.1	gi|379004301|ref|YP_005259973.1|	-	0.047	13.4	0.0	0.094	12.4	0.0	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
NTPase_1	PF03266.10	gi|379004301|ref|YP_005259973.1|	-	0.094	12.4	0.0	2	8.0	0.0	2.3	2	0	0	2	2	2	0	NTPase
AAA_11	PF13086.1	gi|379004301|ref|YP_005259973.1|	-	0.16	11.5	0.0	0.4	10.2	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
VWA_2	PF13519.1	gi|379004302|ref|YP_005259974.1|	-	1.1e-07	32.1	1.3	4.6e-07	30.0	0.6	2.3	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|379004302|ref|YP_005259974.1|	-	3.8e-06	26.2	1.1	2.4e-05	23.5	0.8	2.0	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
vWA-TerF-like	PF10138.4	gi|379004302|ref|YP_005259974.1|	-	0.01	15.6	0.5	0.023	14.5	0.2	1.7	2	0	0	2	2	2	0	vWA	found	in	TerF	C	terminus
VWA	PF00092.23	gi|379004302|ref|YP_005259974.1|	-	0.016	14.9	1.5	0.13	11.9	0.5	2.6	2	1	0	2	2	2	0	von	Willebrand	factor	type	A	domain
CBS	PF00571.23	gi|379004303|ref|YP_005259975.1|	-	5.4e-31	106.1	1.2	2.5e-14	52.7	0.0	2.4	2	1	0	2	2	2	2	CBS	domain
G_glu_transpept	PF01019.16	gi|379004303|ref|YP_005259975.1|	-	0.11	10.9	0.0	0.13	10.6	0.0	1.1	1	0	0	1	1	1	0	Gamma-glutamyltranspeptidase
Thioredoxin_2	PF13098.1	gi|379004304|ref|YP_005259976.1|	-	0.0024	18.0	0.3	0.13	12.5	0.0	2.4	2	0	0	2	2	2	1	Thioredoxin-like	domain
DSBA	PF01323.15	gi|379004304|ref|YP_005259976.1|	-	0.76	9.3	2.9	0.48	9.9	0.4	1.8	2	0	0	2	2	2	0	DSBA-like	thioredoxin	domain
4HBT	PF03061.17	gi|379004305|ref|YP_005259977.1|	-	1e-13	51.2	0.1	1.3e-13	50.8	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.1	gi|379004305|ref|YP_005259977.1|	-	0.00043	20.2	0.0	0.00051	20.0	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.1	gi|379004305|ref|YP_005259977.1|	-	0.012	15.4	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	Thioesterase-like	superfamily
AbrB-like	PF14250.1	gi|379004305|ref|YP_005259977.1|	-	0.088	12.7	0.0	0.2	11.6	0.0	1.6	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
AMP-binding	PF00501.23	gi|379004307|ref|YP_005259979.1|	-	3.5e-18	65.2	0.0	4.4e-18	64.8	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C_2	PF14535.1	gi|379004307|ref|YP_005259979.1|	-	3e-15	56.0	0.2	6.4e-15	54.9	0.1	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
GH3	PF03321.8	gi|379004307|ref|YP_005259979.1|	-	0.0045	15.5	0.0	0.8	8.1	0.0	2.1	2	0	0	2	2	2	2	GH3	auxin-responsive	promoter
DUF1574	PF07611.6	gi|379004307|ref|YP_005259979.1|	-	0.087	11.6	0.0	0.14	11.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1574)
Thiolase_N	PF00108.18	gi|379004308|ref|YP_005259980.1|	-	2.2e-13	49.8	3.3	1.7e-11	43.6	0.2	2.2	1	1	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379004308|ref|YP_005259980.1|	-	3.6e-10	39.3	0.6	3.4e-08	32.9	0.2	2.8	2	1	1	3	3	3	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|379004308|ref|YP_005259980.1|	-	3.4e-07	30.0	8.1	0.00018	21.0	2.0	2.8	2	1	1	3	3	3	2	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|379004308|ref|YP_005259980.1|	-	2e-06	27.3	2.0	0.00021	20.8	0.4	2.4	2	0	0	2	2	2	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.17	gi|379004308|ref|YP_005259980.1|	-	0.0036	17.1	1.1	2.2	8.1	0.0	3.4	3	1	0	3	3	3	2	Beta-ketoacyl	synthase,	C-terminal	domain
DUF35	PF01796.12	gi|379004309|ref|YP_005259981.1|	-	1.7e-14	53.7	0.1	2.7e-14	53.1	0.1	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|379004309|ref|YP_005259981.1|	-	4.1e-13	48.8	0.6	6.4e-13	48.2	0.4	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
TFIIS_C	PF01096.13	gi|379004309|ref|YP_005259981.1|	-	0.016	14.8	0.9	2.8	7.6	0.1	2.3	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_4	PF13717.1	gi|379004309|ref|YP_005259981.1|	-	0.046	13.4	1.7	7.5	6.3	0.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
PolC_DP2	PF03833.8	gi|379004309|ref|YP_005259981.1|	-	0.067	10.8	0.0	0.081	10.5	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zinc_ribbon_5	PF13719.1	gi|379004309|ref|YP_005259981.1|	-	0.067	12.7	2.0	7.2	6.2	0.3	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379004309|ref|YP_005259981.1|	-	1.5	8.8	4.8	29	4.7	3.3	2.3	1	1	0	1	1	1	0	Zinc	ribbon	domain
3HCDH_N	PF02737.13	gi|379004310|ref|YP_005259982.1|	-	1.4e-64	217.0	0.5	1.8e-64	216.6	0.3	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|379004310|ref|YP_005259982.1|	-	2.8e-47	159.0	0.1	4.7e-26	91.0	0.0	2.6	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.10	gi|379004310|ref|YP_005259982.1|	-	1e-08	35.1	0.0	2.2e-08	34.0	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379004310|ref|YP_005259982.1|	-	5.9e-05	22.8	0.1	0.00011	22.0	0.1	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
F420_oxidored	PF03807.12	gi|379004310|ref|YP_005259982.1|	-	0.00016	22.0	0.3	0.00044	20.6	0.2	1.8	1	1	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
AlaDh_PNT_C	PF01262.16	gi|379004310|ref|YP_005259982.1|	-	0.0023	17.5	0.1	0.0037	16.8	0.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
TrkA_N	PF02254.13	gi|379004310|ref|YP_005259982.1|	-	0.003	17.5	0.1	0.22	11.5	0.0	2.6	2	0	0	2	2	2	1	TrkA-N	domain
2-Hacid_dh_C	PF02826.14	gi|379004310|ref|YP_005259982.1|	-	0.008	15.3	0.0	0.017	14.2	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|379004310|ref|YP_005259982.1|	-	0.0084	16.4	0.1	0.019	15.3	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Methyltransf_31	PF13847.1	gi|379004310|ref|YP_005259982.1|	-	0.015	14.8	0.0	0.028	14.0	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379004310|ref|YP_005259982.1|	-	0.016	15.7	0.0	0.05	14.1	0.0	1.8	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379004310|ref|YP_005259982.1|	-	0.023	14.7	0.0	0.058	13.4	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
NAD_binding_7	PF13241.1	gi|379004310|ref|YP_005259982.1|	-	0.031	14.5	0.1	0.05	13.8	0.1	1.4	1	0	0	1	1	1	0	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|379004310|ref|YP_005259982.1|	-	0.045	13.1	0.0	0.088	12.1	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
DAO	PF01266.19	gi|379004310|ref|YP_005259982.1|	-	0.055	12.3	0.4	0.1	11.4	0.2	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
ADH_zinc_N	PF00107.21	gi|379004310|ref|YP_005259982.1|	-	0.081	12.4	0.1	0.98	8.9	0.1	2.7	2	1	0	2	2	2	0	Zinc-binding	dehydrogenase
Saccharop_dh	PF03435.13	gi|379004310|ref|YP_005259982.1|	-	0.094	11.6	0.1	0.14	11.1	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
ThiF	PF00899.16	gi|379004310|ref|YP_005259982.1|	-	0.44	10.3	2.4	1.3	8.8	0.5	2.4	2	0	0	2	2	2	0	ThiF	family
4HBT_2	PF13279.1	gi|379004311|ref|YP_005259983.1|	-	4e-08	33.7	0.0	5.2e-08	33.3	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.17	gi|379004311|ref|YP_005259983.1|	-	2.1e-07	30.9	0.2	3.1e-07	30.4	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
ECH	PF00378.15	gi|379004312|ref|YP_005259984.1|	-	2.8e-76	255.9	0.0	3.1e-76	255.7	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|379004312|ref|YP_005259984.1|	-	0.00065	19.5	0.0	0.0069	16.1	0.0	2.3	2	0	0	2	2	2	1	Peptidase	family	S49
ECH_C	PF13766.1	gi|379004312|ref|YP_005259984.1|	-	0.0018	18.4	0.0	0.0044	17.1	0.0	1.7	2	0	0	2	2	2	1	2-enoyl-CoA	Hydratase	C-terminal	region
SDH_sah	PF01972.11	gi|379004312|ref|YP_005259984.1|	-	0.13	10.9	0.1	0.21	10.3	0.0	1.4	1	1	0	1	1	1	0	Serine	dehydrogenase	proteinase
ECH	PF00378.15	gi|379004313|ref|YP_005259985.1|	-	9.3e-57	191.9	0.0	1e-56	191.7	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|379004313|ref|YP_005259985.1|	-	0.0011	18.7	0.2	0.052	13.3	0.0	2.9	3	0	0	3	3	3	1	Peptidase	family	S49
Oxidored_nitro	PF00148.14	gi|379004313|ref|YP_005259985.1|	-	0.12	11.0	0.0	0.21	10.2	0.0	1.4	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
AurF	PF11583.3	gi|379004314|ref|YP_005259986.1|	-	0.015	14.2	0.7	0.23	10.3	0.5	2.2	1	1	0	1	1	1	0	P-aminobenzoate	N-oxygenase	AurF
Rubrerythrin	PF02915.12	gi|379004314|ref|YP_005259986.1|	-	0.075	13.3	3.3	0.076	13.3	0.3	2.4	3	0	0	3	3	3	0	Rubrerythrin
Fer2_2	PF01799.15	gi|379004315|ref|YP_005259987.1|	-	7.6e-27	93.0	0.2	7.6e-27	93.0	0.1	1.8	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|379004315|ref|YP_005259987.1|	-	0.00014	21.5	0.1	0.00014	21.5	0.1	2.1	1	1	1	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|379004315|ref|YP_005259987.1|	-	0.0042	16.8	0.4	0.0042	16.8	0.3	1.5	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_4	PF13510.1	gi|379004315|ref|YP_005259987.1|	-	0.09	12.5	0.1	0.2	11.4	0.0	1.7	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
FAD_binding_5	PF00941.16	gi|379004316|ref|YP_005259988.1|	-	8.1e-49	165.3	0.0	1.1e-48	164.8	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|379004316|ref|YP_005259988.1|	-	5.3e-18	64.8	1.6	1.2e-17	63.7	0.6	1.9	2	0	0	2	2	2	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Lip_prot_lig_C	PF10437.4	gi|379004316|ref|YP_005259988.1|	-	0.017	14.7	0.0	0.062	12.9	0.0	1.8	2	0	0	2	2	2	0	Bacterial	lipoate	protein	ligase	C-terminus
FAA_hydrolase	PF01557.13	gi|379004317|ref|YP_005259989.1|	-	7.1e-44	149.8	0.0	8.4e-44	149.6	0.0	1.0	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.4	gi|379004317|ref|YP_005259989.1|	-	1.2e-09	38.4	0.1	2.9e-09	37.1	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
Glyoxalase	PF00903.20	gi|379004318|ref|YP_005259990.1|	-	1.9e-24	86.0	0.2	4.2e-17	62.3	0.3	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|379004318|ref|YP_005259990.1|	-	5.7e-14	52.6	0.1	1.4e-06	28.8	0.1	2.3	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|379004318|ref|YP_005259990.1|	-	2e-08	34.2	0.1	0.0017	18.3	0.1	2.9	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
HpaB_N	PF11794.3	gi|379004319|ref|YP_005259991.1|	-	1.2e-75	254.3	0.0	1.5e-75	254.0	0.0	1.1	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|379004319|ref|YP_005259991.1|	-	3e-47	160.1	0.0	5.2e-47	159.3	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
ADC	PF06314.6	gi|379004320|ref|YP_005259992.1|	-	1e-47	162.4	0.1	1.2e-47	162.1	0.0	1.0	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
HTH_10	PF04967.7	gi|379004321|ref|YP_005259993.1|	-	3.5e-16	58.5	0.0	8.6e-16	57.2	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GerE	PF00196.14	gi|379004321|ref|YP_005259993.1|	-	0.00091	18.4	1.8	0.009	15.3	0.1	2.6	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.11	gi|379004321|ref|YP_005259993.1|	-	0.0014	17.8	0.0	0.0035	16.6	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|379004321|ref|YP_005259993.1|	-	0.01	15.4	0.0	0.021	14.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|379004321|ref|YP_005259993.1|	-	0.013	14.9	0.5	0.058	12.8	0.1	2.1	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_38	PF13936.1	gi|379004321|ref|YP_005259993.1|	-	0.016	14.7	0.0	0.063	12.8	0.0	1.9	2	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379004321|ref|YP_005259993.1|	-	0.02	14.5	0.4	0.06	13.0	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|379004321|ref|YP_005259993.1|	-	0.03	13.9	0.2	0.1	12.1	0.1	1.9	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|379004321|ref|YP_005259993.1|	-	0.064	13.0	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_22	PF13309.1	gi|379004321|ref|YP_005259993.1|	-	0.087	12.5	0.4	0.63	9.8	0.0	2.5	2	1	1	3	3	3	0	HTH	domain
HTH_23	PF13384.1	gi|379004321|ref|YP_005259993.1|	-	0.14	11.8	0.2	0.55	9.9	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
Ald_Xan_dh_C2	PF02738.13	gi|379004322|ref|YP_005259994.1|	-	2.8e-92	309.8	0.0	4.1e-78	263.0	0.0	2.1	1	1	1	2	2	2	2	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|379004322|ref|YP_005259994.1|	-	2.1e-15	56.7	0.0	1.3e-14	54.2	0.0	2.4	2	1	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Tautomerase_2	PF14552.1	gi|379004322|ref|YP_005259994.1|	-	0.17	11.8	0.0	0.78	9.8	0.0	2.1	3	0	0	3	3	3	0	Tautomerase	enzyme
Peripla_BP_6	PF13458.1	gi|379004323|ref|YP_005259995.1|	-	4.3e-56	190.7	6.8	5.4e-56	190.3	4.7	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|379004323|ref|YP_005259995.1|	-	9.4e-25	87.1	0.3	3.4e-24	85.2	0.2	1.9	1	1	0	1	1	1	1	Periplasmic	binding	protein	domain
ANF_receptor	PF01094.23	gi|379004323|ref|YP_005259995.1|	-	1.5e-24	86.4	0.3	3.5e-24	85.2	0.2	1.4	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
BPD_transp_2	PF02653.11	gi|379004324|ref|YP_005259996.1|	-	4.5e-26	91.3	41.1	5.7e-26	91.0	28.5	1.1	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
DUF2648	PF10855.3	gi|379004324|ref|YP_005259996.1|	-	1.9	7.9	5.1	0.38	10.2	0.1	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2648)
Peptidase_A8	PF01252.13	gi|379004324|ref|YP_005259996.1|	-	4	7.0	12.3	0.081	12.5	1.5	2.7	1	1	2	3	3	3	0	Signal	peptidase	(SPase)	II
BPD_transp_2	PF02653.11	gi|379004325|ref|YP_005259997.1|	-	1e-15	57.4	38.2	1e-15	57.4	26.5	1.5	1	1	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
ABC_tran	PF00005.22	gi|379004326|ref|YP_005259998.1|	-	3.4e-27	95.4	0.0	4.5e-27	95.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004326|ref|YP_005259998.1|	-	8.1e-10	39.1	2.0	2.9e-07	30.7	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379004326|ref|YP_005259998.1|	-	9.8e-08	32.5	0.6	2e-07	31.5	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004326|ref|YP_005259998.1|	-	4.1e-06	26.2	0.1	7.2e-06	25.4	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|379004326|ref|YP_005259998.1|	-	0.00021	20.6	0.2	0.0016	17.7	0.1	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
ABC_ATPase	PF09818.4	gi|379004326|ref|YP_005259998.1|	-	0.00029	19.5	0.3	0.06	11.9	0.1	2.3	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_19	PF13245.1	gi|379004326|ref|YP_005259998.1|	-	0.00089	18.9	0.1	0.0018	17.9	0.1	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|379004326|ref|YP_005259998.1|	-	0.0029	17.5	0.1	0.013	15.4	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379004326|ref|YP_005259998.1|	-	0.0049	16.3	0.4	0.14	11.5	0.1	2.1	2	0	0	2	2	2	1	AAA-like	domain
T2SE	PF00437.15	gi|379004326|ref|YP_005259998.1|	-	0.0096	14.8	0.1	0.02	13.8	0.1	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Arch_ATPase	PF01637.13	gi|379004326|ref|YP_005259998.1|	-	0.014	15.0	0.0	0.02	14.5	0.0	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_15	PF13175.1	gi|379004326|ref|YP_005259998.1|	-	0.017	14.2	0.0	0.018	14.0	0.0	1.2	1	0	0	1	1	1	0	AAA	ATPase	domain
BCA_ABC_TP_C	PF12399.3	gi|379004326|ref|YP_005259998.1|	-	0.021	14.4	0.1	0.038	13.6	0.1	1.5	1	0	0	1	1	1	0	Branched-chain	amino	acid	ATP-binding	cassette	transporter
cobW	PF02492.14	gi|379004326|ref|YP_005259998.1|	-	0.023	14.1	0.5	0.041	13.3	0.4	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|379004326|ref|YP_005259998.1|	-	0.032	15.0	0.4	0.063	14.0	0.3	1.8	1	1	1	2	2	1	0	AAA	domain
AAA_13	PF13166.1	gi|379004326|ref|YP_005259998.1|	-	0.042	12.3	0.2	0.087	11.2	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379004326|ref|YP_005259998.1|	-	0.044	13.9	1.3	0.17	12.0	0.9	1.9	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|379004326|ref|YP_005259998.1|	-	0.057	12.6	0.1	0.087	12.0	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|379004326|ref|YP_005259998.1|	-	0.06	12.9	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379004326|ref|YP_005259998.1|	-	0.067	12.8	0.1	0.12	11.9	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.9	gi|379004326|ref|YP_005259998.1|	-	0.09	12.4	0.0	0.18	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|379004326|ref|YP_005259998.1|	-	0.11	12.2	0.3	0.27	10.9	0.1	1.7	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|379004326|ref|YP_005259998.1|	-	0.11	12.4	0.2	0.21	11.5	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|379004326|ref|YP_005259998.1|	-	0.16	12.2	1.4	1.2	9.4	1.0	2.3	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|379004327|ref|YP_005259999.1|	-	3.8e-28	98.5	0.0	5.7e-28	97.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004327|ref|YP_005259999.1|	-	1.5e-13	51.3	0.3	1.1e-06	28.8	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379004327|ref|YP_005259999.1|	-	1.4e-05	25.5	0.0	1.9e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379004327|ref|YP_005259999.1|	-	0.0001	21.5	0.1	0.24	10.5	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379004327|ref|YP_005259999.1|	-	0.00046	19.6	0.0	0.0009	18.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|379004327|ref|YP_005259999.1|	-	0.0006	19.5	0.0	0.00088	19.0	0.0	1.4	1	0	0	1	1	1	1	Archaeal	ATPase
UPF0079	PF02367.12	gi|379004327|ref|YP_005259999.1|	-	0.00098	18.7	0.1	0.002	17.7	0.1	1.5	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_16	PF13191.1	gi|379004327|ref|YP_005259999.1|	-	0.0017	18.3	0.0	0.0029	17.6	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_13	PF13166.1	gi|379004327|ref|YP_005259999.1|	-	0.0019	16.7	0.0	0.0021	16.5	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379004327|ref|YP_005259999.1|	-	0.0024	18.6	0.9	0.0035	18.1	0.7	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004327|ref|YP_005259999.1|	-	0.0034	17.5	0.2	0.01	15.9	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379004327|ref|YP_005259999.1|	-	0.0043	17.2	0.0	0.008	16.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_14	PF13173.1	gi|379004327|ref|YP_005259999.1|	-	0.0057	16.5	0.1	0.012	15.5	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|379004327|ref|YP_005259999.1|	-	0.007	15.9	0.1	0.01	15.4	0.1	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|379004327|ref|YP_005259999.1|	-	0.011	15.2	0.0	0.021	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379004327|ref|YP_005259999.1|	-	0.012	15.2	0.0	0.021	14.4	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_19	PF13245.1	gi|379004327|ref|YP_005259999.1|	-	0.013	15.2	0.1	0.024	14.3	0.1	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
NB-ARC	PF00931.17	gi|379004327|ref|YP_005259999.1|	-	0.014	14.2	0.1	0.023	13.5	0.1	1.2	1	0	0	1	1	1	0	NB-ARC	domain
RecA	PF00154.16	gi|379004327|ref|YP_005259999.1|	-	0.016	14.2	0.0	0.023	13.7	0.0	1.2	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_10	PF12846.2	gi|379004327|ref|YP_005259999.1|	-	0.016	14.6	0.1	0.043	13.2	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
ATP_bind_1	PF03029.12	gi|379004327|ref|YP_005259999.1|	-	0.02	14.4	0.0	0.041	13.4	0.0	1.5	1	1	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
ArgK	PF03308.11	gi|379004327|ref|YP_005259999.1|	-	0.025	13.3	0.1	0.04	12.6	0.1	1.3	1	0	0	1	1	1	0	ArgK	protein
AAA_25	PF13481.1	gi|379004327|ref|YP_005259999.1|	-	0.027	13.8	0.0	0.044	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|379004327|ref|YP_005259999.1|	-	0.029	13.8	0.0	0.046	13.1	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF3584	PF12128.3	gi|379004327|ref|YP_005259999.1|	-	0.031	11.6	0.1	0.039	11.3	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
MobB	PF03205.9	gi|379004327|ref|YP_005259999.1|	-	0.038	13.6	0.1	0.12	12.1	0.0	1.8	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.14	gi|379004327|ref|YP_005259999.1|	-	0.042	13.2	0.3	0.076	12.4	0.2	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Adeno_IVa2	PF02456.10	gi|379004327|ref|YP_005259999.1|	-	0.043	12.4	0.0	0.059	12.0	0.0	1.1	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
MutS_V	PF00488.16	gi|379004327|ref|YP_005259999.1|	-	0.054	12.9	0.0	0.079	12.3	0.0	1.2	1	0	0	1	1	1	0	MutS	domain	V
NTPase_1	PF03266.10	gi|379004327|ref|YP_005259999.1|	-	0.097	12.3	0.0	0.14	11.9	0.0	1.3	1	0	0	1	1	1	0	NTPase
AAA_33	PF13671.1	gi|379004327|ref|YP_005259999.1|	-	0.13	12.1	0.1	0.27	11.0	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|379004327|ref|YP_005259999.1|	-	0.14	12.4	0.2	0.19	12.0	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379004327|ref|YP_005259999.1|	-	0.15	11.2	0.0	0.23	10.6	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
PIF1	PF05970.9	gi|379004327|ref|YP_005259999.1|	-	0.15	10.9	0.1	0.22	10.3	0.1	1.2	1	0	0	1	1	1	0	PIF1-like	helicase
DUF258	PF03193.11	gi|379004327|ref|YP_005259999.1|	-	0.16	11.1	0.0	0.24	10.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
PhoU	PF01895.14	gi|379004328|ref|YP_005260000.1|	-	8.4e-07	29.3	0.4	8.4e-07	29.3	0.3	2.2	2	0	0	2	2	2	1	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|379004328|ref|YP_005260000.1|	-	0.0091	15.7	0.0	0.023	14.4	0.0	1.7	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
BPD_transp_1	PF00528.17	gi|379004329|ref|YP_005260001.1|	-	6.8e-10	38.7	15.5	6.8e-10	38.7	10.7	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
MotA_ExbB	PF01618.11	gi|379004329|ref|YP_005260001.1|	-	2.2	7.8	5.8	1.4	8.5	0.2	2.8	3	0	0	3	3	3	0	MotA/TolQ/ExbB	proton	channel	family
BPD_transp_1	PF00528.17	gi|379004330|ref|YP_005260002.1|	-	1.6e-13	50.5	18.1	1.6e-13	50.5	12.5	2.2	1	1	2	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|379004331|ref|YP_005260003.1|	-	9.5e-35	119.8	0.0	1.3e-34	119.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004331|ref|YP_005260003.1|	-	9e-11	42.2	1.8	3.2e-05	24.0	0.1	2.2	1	1	0	2	2	2	2	AAA	domain
TOBE_2	PF08402.5	gi|379004331|ref|YP_005260003.1|	-	2.1e-08	34.0	0.3	1e-07	31.7	0.1	2.2	2	0	0	2	2	2	1	TOBE	domain
AAA_29	PF13555.1	gi|379004331|ref|YP_005260003.1|	-	6.7e-06	25.5	0.1	1.2e-05	24.7	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|379004331|ref|YP_005260003.1|	-	1.2e-05	24.5	0.0	0.00055	19.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_16	PF13191.1	gi|379004331|ref|YP_005260003.1|	-	4.8e-05	23.4	0.0	6.7e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379004331|ref|YP_005260003.1|	-	9.9e-05	22.4	2.2	0.0019	18.3	1.5	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_5	PF07728.9	gi|379004331|ref|YP_005260003.1|	-	0.00068	19.3	0.4	0.0028	17.3	0.1	2.0	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.16	gi|379004331|ref|YP_005260003.1|	-	0.0011	18.2	0.0	0.0017	17.5	0.0	1.3	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_10	PF12846.2	gi|379004331|ref|YP_005260003.1|	-	0.0058	16.1	0.1	0.0089	15.5	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
AAA_19	PF13245.1	gi|379004331|ref|YP_005260003.1|	-	0.0059	16.3	0.3	0.013	15.2	0.2	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
SbcCD_C	PF13558.1	gi|379004331|ref|YP_005260003.1|	-	0.0071	16.2	0.1	0.069	13.0	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
DUF258	PF03193.11	gi|379004331|ref|YP_005260003.1|	-	0.0078	15.4	0.1	0.012	14.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|379004331|ref|YP_005260003.1|	-	0.019	15.7	0.7	0.057	14.2	0.5	2.1	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|379004331|ref|YP_005260003.1|	-	0.02	14.3	0.1	0.038	13.4	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|379004331|ref|YP_005260003.1|	-	0.02	14.5	0.2	0.031	13.9	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.1	gi|379004331|ref|YP_005260003.1|	-	0.025	14.4	0.1	0.051	13.4	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
G-alpha	PF00503.15	gi|379004331|ref|YP_005260003.1|	-	0.032	12.9	0.1	0.047	12.3	0.1	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_25	PF13481.1	gi|379004331|ref|YP_005260003.1|	-	0.036	13.4	0.9	0.085	12.2	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|379004331|ref|YP_005260003.1|	-	0.037	14.2	0.1	0.3	11.2	0.1	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_30	PF13604.1	gi|379004331|ref|YP_005260003.1|	-	0.048	13.2	0.1	0.097	12.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|379004331|ref|YP_005260003.1|	-	0.073	12.2	0.1	3.9	6.6	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379004331|ref|YP_005260003.1|	-	0.078	13.2	0.0	0.13	12.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|379004331|ref|YP_005260003.1|	-	0.084	12.5	0.1	0.14	11.7	0.1	1.4	1	0	0	1	1	1	0	Archaeal	ATPase
T2SE	PF00437.15	gi|379004331|ref|YP_005260003.1|	-	0.13	11.1	0.0	0.19	10.5	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|379004331|ref|YP_005260003.1|	-	0.16	11.4	0.1	0.31	10.4	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
DUF998	PF06197.8	gi|379004332|ref|YP_005260004.1|	-	1.4e-35	122.2	22.9	1.6e-35	122.1	15.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
Colicin_V	PF02674.11	gi|379004332|ref|YP_005260004.1|	-	2.4	8.0	23.0	0.8	9.5	2.7	2.2	2	0	0	2	2	2	0	Colicin	V	production	protein
DUF4233	PF14017.1	gi|379004332|ref|YP_005260004.1|	-	3.7	7.5	13.2	1.7	8.5	3.2	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4233)
Lyase_1	PF00206.15	gi|379004334|ref|YP_005260006.1|	-	5.8e-35	120.9	0.0	8.1e-35	120.4	0.0	1.1	1	0	0	1	1	1	1	Lyase
DUF2680	PF10925.3	gi|379004334|ref|YP_005260006.1|	-	0.045	13.6	0.4	0.095	12.5	0.3	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2680)
zinc_ribbon_2	PF13240.1	gi|379004335|ref|YP_005260007.1|	-	0.0015	17.9	7.0	0.1	12.0	0.2	2.4	2	1	0	2	2	2	2	zinc-ribbon	domain
Auto_anti-p27	PF06677.7	gi|379004335|ref|YP_005260007.1|	-	0.0037	17.0	3.0	0.39	10.5	0.1	2.2	2	0	0	2	2	2	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-NADH-PPase	PF09297.6	gi|379004335|ref|YP_005260007.1|	-	0.0083	15.6	3.4	0.77	9.3	0.1	2.4	2	1	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
LIM	PF00412.17	gi|379004335|ref|YP_005260007.1|	-	0.0089	16.0	2.5	0.011	15.8	1.7	1.1	1	0	0	1	1	1	1	LIM	domain
zf-ribbon_3	PF13248.1	gi|379004335|ref|YP_005260007.1|	-	0.011	14.9	10.2	0.33	10.2	1.8	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
Tnp_zf-ribbon_2	PF13842.1	gi|379004335|ref|YP_005260007.1|	-	0.013	15.8	2.0	0.013	15.8	1.4	2.0	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DZR	PF12773.2	gi|379004335|ref|YP_005260007.1|	-	0.016	15.0	6.6	0.42	10.4	4.6	2.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-FPG_IleRS	PF06827.9	gi|379004335|ref|YP_005260007.1|	-	0.016	14.8	5.7	0.6	9.8	0.8	2.4	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
zf-TFIIB	PF13453.1	gi|379004335|ref|YP_005260007.1|	-	0.04	13.1	7.0	0.99	8.6	0.1	2.2	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
UPF0547	PF10571.4	gi|379004335|ref|YP_005260007.1|	-	0.068	12.8	11.5	0.59	9.8	8.0	2.2	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
IBR	PF01485.16	gi|379004335|ref|YP_005260007.1|	-	0.1	12.4	5.1	0.13	12.1	3.5	1.1	1	0	0	1	1	1	0	IBR	domain
Acetone_carb_G	PF08882.6	gi|379004335|ref|YP_005260007.1|	-	0.12	12.3	2.1	0.2	11.7	1.5	1.5	1	1	0	1	1	1	0	Acetone	carboxylase	gamma	subunit
Rubredoxin	PF00301.15	gi|379004335|ref|YP_005260007.1|	-	0.14	12.0	4.9	1.2	9.0	0.2	2.2	2	0	0	2	2	2	0	Rubredoxin
zf-ISL3	PF14690.1	gi|379004335|ref|YP_005260007.1|	-	0.15	12.1	6.9	2.9	7.9	0.2	2.3	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Lar_restr_allev	PF14354.1	gi|379004335|ref|YP_005260007.1|	-	0.17	12.2	4.6	0.22	11.8	3.2	1.3	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
Sgf11	PF08209.6	gi|379004335|ref|YP_005260007.1|	-	0.18	11.1	11.8	0.17	11.2	2.4	2.9	2	1	1	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
Arc_trans_TRASH	PF08394.5	gi|379004335|ref|YP_005260007.1|	-	0.19	11.9	6.6	1.5	9.0	1.9	2.2	2	0	0	2	2	2	0	Archaeal	TRASH	domain
TF_Zn_Ribbon	PF08271.7	gi|379004335|ref|YP_005260007.1|	-	0.19	11.0	9.2	0.77	9.1	1.3	2.3	2	1	0	2	2	2	0	TFIIB	zinc-binding
DUF329	PF03884.9	gi|379004335|ref|YP_005260007.1|	-	0.19	11.3	9.1	0.9	9.1	2.3	2.2	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
NinF	PF05810.7	gi|379004335|ref|YP_005260007.1|	-	0.26	11.1	2.3	8.7	6.2	1.6	2.1	1	1	0	1	1	1	0	NinF	protein
zf-RING_3	PF14369.1	gi|379004335|ref|YP_005260007.1|	-	0.26	11.3	6.0	6.2	6.9	1.4	2.3	2	1	0	2	2	2	0	zinc-finger
GFA	PF04828.9	gi|379004335|ref|YP_005260007.1|	-	0.27	11.2	4.9	0.59	10.1	0.6	2.0	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
OrfB_Zn_ribbon	PF07282.6	gi|379004335|ref|YP_005260007.1|	-	0.36	10.5	5.0	4.3	7.0	0.8	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
zinc-ribbons_6	PF07191.7	gi|379004335|ref|YP_005260007.1|	-	0.41	10.4	5.2	0.7	9.7	3.6	1.4	1	1	0	1	1	1	0	zinc-ribbons
FYDLN_acid	PF09538.5	gi|379004335|ref|YP_005260007.1|	-	0.52	10.9	3.0	2.8	8.5	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf-HYPF	PF07503.7	gi|379004335|ref|YP_005260007.1|	-	0.53	9.7	9.6	5.8	6.4	6.7	2.0	1	1	0	1	1	1	0	HypF	finger
PHD	PF00628.24	gi|379004335|ref|YP_005260007.1|	-	0.57	9.9	4.9	0.87	9.3	3.4	1.4	1	1	0	1	1	1	0	PHD-finger
DiS_P_DiS	PF06750.8	gi|379004335|ref|YP_005260007.1|	-	0.66	9.8	3.1	9.1	6.1	0.2	2.0	1	1	1	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn-ribbon_8	PF09723.5	gi|379004335|ref|YP_005260007.1|	-	0.69	9.9	10.8	1.8	8.6	0.5	2.5	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-HIT	PF04438.11	gi|379004335|ref|YP_005260007.1|	-	0.7	9.5	9.9	0.98	9.1	1.2	2.3	2	0	0	2	2	2	0	HIT	zinc	finger
DUF2296	PF10058.4	gi|379004335|ref|YP_005260007.1|	-	0.71	9.6	8.9	9.3	6.0	6.2	2.1	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DUF35_N	PF12172.3	gi|379004335|ref|YP_005260007.1|	-	0.85	9.6	4.9	3.6	7.6	0.1	2.3	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
PhnA_Zn_Ribbon	PF08274.7	gi|379004335|ref|YP_005260007.1|	-	0.92	9.3	3.9	8.7	6.2	0.1	2.3	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Zn_ribbon_recom	PF13408.1	gi|379004335|ref|YP_005260007.1|	-	2	8.7	7.8	3.5	7.9	5.4	1.4	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
E7	PF00527.13	gi|379004335|ref|YP_005260007.1|	-	2.1	8.5	8.0	2.9	8.0	1.6	2.0	1	1	1	2	2	2	0	E7	protein,	Early	protein
Zn_Tnp_IS1595	PF12760.2	gi|379004335|ref|YP_005260007.1|	-	2.7	7.8	12.3	8.3	6.3	1.8	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
HypA	PF01155.14	gi|379004335|ref|YP_005260007.1|	-	4.1	7.1	6.1	6.3	6.5	4.2	1.4	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|379004335|ref|YP_005260007.1|	-	4.3	7.1	7.5	6.3	6.6	0.9	2.3	1	1	2	3	3	3	0	Prokaryotic	RING	finger	family	1
CpXC	PF14353.1	gi|379004335|ref|YP_005260007.1|	-	7	6.6	6.9	1.8e+02	2.0	4.8	2.1	1	1	0	1	1	1	0	CpXC	protein
zf-C4_Topoisom	PF01396.14	gi|379004335|ref|YP_005260007.1|	-	8.8	5.9	9.6	3	7.4	0.4	2.3	2	1	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF1610	PF07754.6	gi|379004335|ref|YP_005260007.1|	-	9.7	6.4	10.7	5.5	7.2	0.5	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-CCHC	PF00098.18	gi|379004335|ref|YP_005260007.1|	-	9.7	6.3	8.1	3.9	7.5	0.2	2.3	2	0	0	2	2	2	0	Zinc	knuckle
Arginosuc_synth	PF00764.14	gi|379004336|ref|YP_005260008.1|	-	4.9e-153	509.7	0.0	6e-153	509.4	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.8	gi|379004336|ref|YP_005260008.1|	-	0.00061	19.1	0.0	0.0017	17.7	0.0	1.7	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.16	gi|379004336|ref|YP_005260008.1|	-	0.001	18.6	0.0	0.0018	17.8	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
PaRep2b	PF07775.6	gi|379004339|ref|YP_005260011.1|	-	3.7e-122	408.1	11.8	2.8e-82	276.6	2.9	2.4	1	1	1	2	2	2	2	PaRep2b	protein
Radical_SAM	PF04055.16	gi|379004339|ref|YP_005260011.1|	-	0.00063	19.9	2.4	5.1	7.2	0.0	4.2	3	1	0	3	3	3	2	Radical	SAM	superfamily
Fusion_gly	PF00523.13	gi|379004339|ref|YP_005260011.1|	-	0.012	13.7	5.4	0.021	12.9	3.7	1.3	1	0	0	1	1	1	0	Fusion	glycoprotein	F0
DUF1319	PF07028.6	gi|379004339|ref|YP_005260011.1|	-	3.3	7.9	7.3	2.5	8.3	0.1	3.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1319)
HypA	PF01155.14	gi|379004340|ref|YP_005260012.1|	-	4.2e-06	26.4	0.2	4.4e-06	26.3	0.2	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_5	PF13719.1	gi|379004340|ref|YP_005260012.1|	-	1.1e-05	24.9	0.7	0.047	13.2	0.0	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379004340|ref|YP_005260012.1|	-	2.8e-05	23.6	1.0	0.057	13.1	0.0	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379004340|ref|YP_005260012.1|	-	3.1e-05	23.8	0.4	4.3e-05	23.3	0.3	1.2	1	0	0	1	1	1	1	Zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|379004340|ref|YP_005260012.1|	-	0.00028	20.5	1.8	0.00078	19.1	1.3	1.6	1	1	0	1	1	1	1	Prokaryotic	RING	finger	family	1
TF_Zn_Ribbon	PF08271.7	gi|379004340|ref|YP_005260012.1|	-	0.00047	19.4	4.0	0.0011	18.2	2.8	1.5	1	1	0	1	1	1	1	TFIIB	zinc-binding
zf-HYPF	PF07503.7	gi|379004340|ref|YP_005260012.1|	-	0.0005	19.4	0.6	0.086	12.2	0.1	2.1	2	0	0	2	2	2	1	HypF	finger
zf-CSL	PF05207.8	gi|379004340|ref|YP_005260012.1|	-	0.00093	18.6	0.4	0.00093	18.6	0.3	1.6	2	0	0	2	2	2	1	CSL	zinc	finger
DZR	PF12773.2	gi|379004340|ref|YP_005260012.1|	-	0.0085	15.8	0.6	0.012	15.4	0.4	1.3	1	1	0	1	1	1	1	Double	zinc	ribbon
zf-CHCC	PF10276.4	gi|379004340|ref|YP_005260012.1|	-	0.0098	15.7	0.1	4.5	7.1	0.0	2.1	2	0	0	2	2	2	0	Zinc-finger	domain
zinc_ribbon_2	PF13240.1	gi|379004340|ref|YP_005260012.1|	-	0.012	15.1	0.7	3	7.4	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|379004340|ref|YP_005260012.1|	-	0.016	14.8	0.6	1	9.0	0.1	2.0	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-C2H2_6	PF13912.1	gi|379004340|ref|YP_005260012.1|	-	0.034	14.0	1.1	2.5	8.1	0.1	2.2	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zf-CHY	PF05495.7	gi|379004340|ref|YP_005260012.1|	-	0.037	14.1	0.3	0.043	13.9	0.2	1.1	1	0	0	1	1	1	0	CHY	zinc	finger
zf-C2H2_3	PF13878.1	gi|379004340|ref|YP_005260012.1|	-	0.041	13.4	2.7	1.7	8.2	0.1	2.2	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
DUF3797	PF12677.2	gi|379004340|ref|YP_005260012.1|	-	0.043	13.4	0.8	2.5	7.7	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
DUF2072	PF09845.4	gi|379004340|ref|YP_005260012.1|	-	0.06	13.2	0.2	0.064	13.1	0.2	1.1	1	0	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
IBR	PF01485.16	gi|379004340|ref|YP_005260012.1|	-	0.067	13.0	0.4	3.2	7.6	0.1	2.1	2	0	0	2	2	2	0	IBR	domain
zf-C2H2	PF00096.21	gi|379004340|ref|YP_005260012.1|	-	0.067	13.5	0.6	4.9	7.6	0.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
CpXC	PF14353.1	gi|379004340|ref|YP_005260012.1|	-	0.067	13.1	1.4	4.4	7.2	0.0	2.1	1	1	1	2	2	2	0	CpXC	protein
FYVE	PF01363.16	gi|379004340|ref|YP_005260012.1|	-	0.067	13.0	0.3	8	6.4	0.0	2.0	1	1	1	2	2	2	0	FYVE	zinc	finger
RecR	PF02132.10	gi|379004340|ref|YP_005260012.1|	-	0.07	12.5	0.6	4.5	6.7	0.1	2.2	2	0	0	2	2	2	0	RecR	protein
zf-ISL3	PF14690.1	gi|379004340|ref|YP_005260012.1|	-	0.071	13.1	0.2	1.2	9.1	0.0	2.0	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DNA_RNApol_7kD	PF03604.8	gi|379004340|ref|YP_005260012.1|	-	0.072	12.5	2.8	1.4	8.4	2.3	2.1	1	1	1	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-IS66	PF13005.2	gi|379004340|ref|YP_005260012.1|	-	0.08	12.9	0.5	5.2	7.1	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Nudix_N_2	PF14803.1	gi|379004340|ref|YP_005260012.1|	-	0.083	12.5	0.7	6.1	6.6	0.0	2.3	2	1	0	2	2	2	0	Nudix	N-terminal
PhnA_Zn_Ribbon	PF08274.7	gi|379004340|ref|YP_005260012.1|	-	0.1	12.3	1.1	0.17	11.7	0.8	1.3	1	0	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-UDP	PF14569.1	gi|379004340|ref|YP_005260012.1|	-	0.1	12.3	0.5	0.22	11.3	0.3	1.5	1	1	0	1	1	1	0	Zinc-binding	RING-finger
ADK_lid	PF05191.9	gi|379004340|ref|YP_005260012.1|	-	0.11	12.1	1.7	4.5	7.0	0.2	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
DUF164	PF02591.10	gi|379004340|ref|YP_005260012.1|	-	0.12	12.1	0.4	3.1	7.6	0.0	2.2	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
UPF0547	PF10571.4	gi|379004340|ref|YP_005260012.1|	-	0.13	11.9	1.7	6.3	6.5	0.1	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1451	PF07295.6	gi|379004340|ref|YP_005260012.1|	-	0.14	11.9	0.1	0.18	11.5	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
Zn_ribbon_recom	PF13408.1	gi|379004340|ref|YP_005260012.1|	-	0.14	12.4	0.5	1.2	9.4	0.0	2.0	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Lar_restr_allev	PF14354.1	gi|379004340|ref|YP_005260012.1|	-	0.16	12.2	1.6	0.53	10.6	1.1	1.8	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
TFIIS_C	PF01096.13	gi|379004340|ref|YP_005260012.1|	-	0.17	11.5	2.0	10	5.8	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-trcl	PF13451.1	gi|379004340|ref|YP_005260012.1|	-	0.18	11.4	0.8	1.7	8.3	0.1	2.0	2	0	0	2	2	2	0	Probable	zinc-binding	domain
zf-ribbon_3	PF13248.1	gi|379004340|ref|YP_005260012.1|	-	0.19	11.0	5.2	3.1	7.1	0.4	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
RNA_POL_M_15KD	PF02150.11	gi|379004340|ref|YP_005260012.1|	-	0.19	11.4	1.3	4.3	7.1	0.0	2.1	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
A2L_zn_ribbon	PF08792.5	gi|379004340|ref|YP_005260012.1|	-	0.41	10.1	2.8	3.4	7.2	1.9	2.0	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|379004340|ref|YP_005260012.1|	-	0.49	10.2	2.1	1.4	8.8	0.0	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|379004340|ref|YP_005260012.1|	-	0.73	9.7	4.2	36	4.3	2.9	2.2	1	1	0	1	1	1	0	Rubredoxin
zf-HIT	PF04438.11	gi|379004340|ref|YP_005260012.1|	-	1	9.0	6.1	3.1	7.5	0.6	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
RRN7	PF11781.3	gi|379004340|ref|YP_005260012.1|	-	1.3	8.5	3.6	4.9	6.7	0.2	2.2	1	1	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
AA_kinase	PF00696.23	gi|379004341|ref|YP_005260013.1|	-	9.3e-35	120.3	2.2	1.1e-34	120.0	1.6	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.19	gi|379004342|ref|YP_005260014.1|	-	1.3e-31	109.4	0.0	2.1e-31	108.7	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|379004342|ref|YP_005260014.1|	-	4.3e-10	39.7	0.0	1.2e-09	38.2	0.0	1.7	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
GFO_IDH_MocA	PF01408.17	gi|379004342|ref|YP_005260014.1|	-	0.0064	16.9	0.0	0.012	16.1	0.0	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.15	gi|379004342|ref|YP_005260014.1|	-	0.015	15.2	0.0	0.026	14.4	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
Epimerase	PF01370.16	gi|379004342|ref|YP_005260014.1|	-	0.067	12.6	0.0	0.1	11.9	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Saccharop_dh	PF03435.13	gi|379004342|ref|YP_005260014.1|	-	0.11	11.4	0.0	0.17	10.8	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
RAB3GAP2_N	PF14655.1	gi|379004346|ref|YP_005260018.1|	-	0.25	10.2	0.0	0.38	9.6	0.0	1.2	1	0	0	1	1	1	0	Rab3	GTPase-activating	protein	regulatory	subunit	N-terminus
Sulf_transp	PF04143.9	gi|379004347|ref|YP_005260019.1|	-	9.3e-15	54.3	24.9	7.9e-10	38.6	6.5	4.2	4	0	0	4	4	4	2	Sulphur	transport
Coatomer_WDAD	PF04053.9	gi|379004348|ref|YP_005260020.1|	-	0.034	12.9	0.0	0.083	11.6	0.0	1.5	1	1	0	1	1	1	0	Coatomer	WD	associated	region
InaF-motif	PF15018.1	gi|379004348|ref|YP_005260020.1|	-	0.064	12.7	0.2	0.16	11.4	0.1	1.7	1	0	0	1	1	1	0	TRP-interacting	helix
TusA	PF01206.12	gi|379004349|ref|YP_005260021.1|	-	1.8e-18	65.8	0.0	2.1e-18	65.7	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
PepSY_2	PF13670.1	gi|379004349|ref|YP_005260021.1|	-	0.048	13.5	0.9	0.073	12.9	0.1	1.8	2	1	0	2	2	2	0	Peptidase	propeptide	and	YPEB	domain
DrsE	PF02635.10	gi|379004350|ref|YP_005260022.1|	-	2.6e-08	33.9	0.0	4e-08	33.3	0.0	1.3	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.1	gi|379004350|ref|YP_005260022.1|	-	1.7e-05	24.6	0.2	3.5e-05	23.6	0.1	1.5	1	1	1	2	2	2	1	DsrE/DsrF/DrsH-like	family
Spore_YhcN_YlaJ	PF09580.5	gi|379004350|ref|YP_005260022.1|	-	0.12	12.4	0.1	0.2	11.7	0.0	1.4	2	0	0	2	2	2	0	Sporulation	lipoprotein	YhcN/YlaJ	(Spore_YhcN_YlaJ)
Cytochrom_D1	PF02239.11	gi|379004351|ref|YP_005260023.1|	-	1.2e-06	27.1	0.0	0.0013	17.1	0.0	2.3	2	0	0	2	2	2	2	Cytochrome	D1	heme	domain
IncA	PF04156.9	gi|379004351|ref|YP_005260023.1|	-	3e-05	23.7	7.6	5.1e-05	22.9	5.3	1.3	1	0	0	1	1	1	1	IncA	protein
Atg14	PF10186.4	gi|379004351|ref|YP_005260023.1|	-	5.5e-05	22.2	1.8	8.1e-05	21.7	1.3	1.2	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF4446	PF14584.1	gi|379004351|ref|YP_005260023.1|	-	5.7e-05	22.9	2.2	0.00031	20.5	1.9	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF4446)
SlyX	PF04102.7	gi|379004351|ref|YP_005260023.1|	-	8.2e-05	22.8	5.0	0.00014	22.2	3.5	1.3	1	0	0	1	1	1	1	SlyX
MAD	PF05557.8	gi|379004351|ref|YP_005260023.1|	-	0.00016	19.9	2.2	0.00023	19.4	1.5	1.1	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
Transposase_22	PF02994.9	gi|379004351|ref|YP_005260023.1|	-	0.00064	18.3	0.4	0.0009	17.8	0.3	1.1	1	0	0	1	1	1	1	L1	transposable	element
ATG16	PF08614.6	gi|379004351|ref|YP_005260023.1|	-	0.00092	19.0	4.5	0.0014	18.5	3.2	1.1	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
Laminin_I	PF06008.9	gi|379004351|ref|YP_005260023.1|	-	0.00096	18.5	4.6	0.0013	18.0	3.2	1.1	1	0	0	1	1	1	1	Laminin	Domain	I
TMF_DNA_bd	PF12329.3	gi|379004351|ref|YP_005260023.1|	-	0.0014	18.3	8.5	0.0028	17.4	5.9	1.4	1	0	0	1	1	1	1	TATA	element	modulatory	factor	1	DNA	binding
Tropomyosin_1	PF12718.2	gi|379004351|ref|YP_005260023.1|	-	0.0015	18.3	7.5	0.0023	17.8	5.2	1.1	1	0	0	1	1	1	1	Tropomyosin	like
Tropomyosin	PF00261.15	gi|379004351|ref|YP_005260023.1|	-	0.0018	17.4	2.7	0.0031	16.6	1.8	1.3	1	0	0	1	1	1	1	Tropomyosin
Med4	PF10018.4	gi|379004351|ref|YP_005260023.1|	-	0.0018	17.6	7.4	0.0095	15.3	4.9	1.9	1	1	0	1	1	1	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
EzrA	PF06160.7	gi|379004351|ref|YP_005260023.1|	-	0.0038	15.4	4.9	0.0053	15.0	3.4	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
AAA_13	PF13166.1	gi|379004351|ref|YP_005260023.1|	-	0.0039	15.7	2.8	0.0052	15.3	2.0	1.1	1	0	0	1	1	1	1	AAA	domain
MscS_porin	PF12795.2	gi|379004351|ref|YP_005260023.1|	-	0.0041	16.4	10.6	0.0059	15.9	7.3	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
Spc7	PF08317.6	gi|379004351|ref|YP_005260023.1|	-	0.0057	15.3	6.4	0.0081	14.8	4.5	1.1	1	0	0	1	1	1	1	Spc7	kinetochore	protein
Kinetocho_Slk19	PF12709.2	gi|379004351|ref|YP_005260023.1|	-	0.0059	16.6	1.0	0.012	15.6	0.7	1.4	1	0	0	1	1	1	1	Central	kinetochore-associated
TBPIP	PF07106.8	gi|379004351|ref|YP_005260023.1|	-	0.0061	16.1	3.2	0.01	15.4	2.2	1.2	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF812	PF05667.6	gi|379004351|ref|YP_005260023.1|	-	0.0069	14.9	3.3	0.0098	14.4	2.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
TPR_MLP1_2	PF07926.7	gi|379004351|ref|YP_005260023.1|	-	0.0071	16.0	7.3	0.011	15.4	5.0	1.2	1	0	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
DUF948	PF06103.6	gi|379004351|ref|YP_005260023.1|	-	0.0071	16.1	2.9	0.014	15.2	2.0	1.4	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF948)
CENP-Q	PF13094.1	gi|379004351|ref|YP_005260023.1|	-	0.0075	16.3	1.6	0.011	15.7	1.1	1.2	1	0	0	1	1	1	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
HemX	PF04375.9	gi|379004351|ref|YP_005260023.1|	-	0.0076	14.8	5.1	0.011	14.3	3.5	1.1	1	0	0	1	1	1	1	HemX
Fib_alpha	PF08702.5	gi|379004351|ref|YP_005260023.1|	-	0.0086	16.1	3.8	0.015	15.4	2.6	1.3	1	0	0	1	1	1	1	Fibrinogen	alpha/beta	chain	family
DUF2730	PF10805.3	gi|379004351|ref|YP_005260023.1|	-	0.011	15.4	1.7	0.021	14.5	1.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
ADIP	PF11559.3	gi|379004351|ref|YP_005260023.1|	-	0.012	15.5	6.6	0.019	14.8	4.6	1.2	1	0	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Seryl_tRNA_N	PF02403.17	gi|379004351|ref|YP_005260023.1|	-	0.013	15.5	6.2	0.052	13.5	4.3	1.8	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF641	PF04859.7	gi|379004351|ref|YP_005260023.1|	-	0.013	15.2	4.4	0.026	14.2	3.1	1.3	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
FlxA	PF14282.1	gi|379004351|ref|YP_005260023.1|	-	0.014	15.3	15.6	0.021	14.7	10.8	1.2	1	0	0	1	1	1	0	FlxA-like	protein
DUF869	PF05911.6	gi|379004351|ref|YP_005260023.1|	-	0.014	13.6	3.3	0.018	13.3	2.3	1.0	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF869)
OmpH	PF03938.9	gi|379004351|ref|YP_005260023.1|	-	0.014	15.2	4.0	0.015	15.2	1.7	1.7	2	0	0	2	2	1	0	Outer	membrane	protein	(OmpH-like)
RTBV_P46	PF06216.6	gi|379004351|ref|YP_005260023.1|	-	0.015	14.1	0.7	0.025	13.4	0.2	1.5	2	0	0	2	2	1	0	Rice	tungro	bacilliform	virus	P46	protein
Gp58	PF07902.6	gi|379004351|ref|YP_005260023.1|	-	0.019	13.1	0.9	0.027	12.7	0.6	1.1	1	0	0	1	1	1	0	gp58-like	protein
DUF3450	PF11932.3	gi|379004351|ref|YP_005260023.1|	-	0.021	14.1	7.8	0.028	13.6	5.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3450)
Baculo_PEP_C	PF04513.7	gi|379004351|ref|YP_005260023.1|	-	0.023	14.5	3.3	0.036	13.9	2.3	1.2	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF106	PF01956.11	gi|379004351|ref|YP_005260023.1|	-	0.024	14.1	0.1	0.035	13.6	0.0	1.2	1	0	0	1	1	1	0	Integral	membrane	protein	DUF106
Ax_dynein_light	PF10211.4	gi|379004351|ref|YP_005260023.1|	-	0.025	14.4	4.3	0.038	13.8	3.0	1.2	1	0	0	1	1	1	0	Axonemal	dynein	light	chain
FliJ	PF02050.11	gi|379004351|ref|YP_005260023.1|	-	0.025	14.6	10.9	0.04	13.9	7.6	1.2	1	0	0	1	1	1	0	Flagellar	FliJ	protein
FemAB	PF02388.11	gi|379004351|ref|YP_005260023.1|	-	0.025	13.2	1.1	0.039	12.6	0.8	1.2	1	0	0	1	1	1	0	FemAB	family
FliD_C	PF07195.7	gi|379004351|ref|YP_005260023.1|	-	0.034	13.4	1.2	0.059	12.6	0.8	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
IFT57	PF10498.4	gi|379004351|ref|YP_005260023.1|	-	0.038	12.7	3.6	0.058	12.1	2.5	1.1	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
DASH_Spc34	PF08657.5	gi|379004351|ref|YP_005260023.1|	-	0.041	13.5	2.6	0.066	12.8	1.8	1.3	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
GAS	PF13851.1	gi|379004351|ref|YP_005260023.1|	-	0.042	13.0	6.1	0.063	12.4	4.2	1.1	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
TMPIT	PF07851.8	gi|379004351|ref|YP_005260023.1|	-	0.042	12.9	1.2	0.064	12.3	0.8	1.2	1	0	0	1	1	1	0	TMPIT-like	protein
DUF724	PF05266.9	gi|379004351|ref|YP_005260023.1|	-	0.046	13.3	3.2	0.071	12.7	2.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
DUF1664	PF07889.7	gi|379004351|ref|YP_005260023.1|	-	0.049	13.4	1.4	0.081	12.7	1.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
zf-ZPR1	PF03367.8	gi|379004351|ref|YP_005260023.1|	-	0.05	12.7	0.5	0.074	12.2	0.4	1.2	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
UPF0118	PF01594.11	gi|379004351|ref|YP_005260023.1|	-	0.052	12.5	0.8	0.069	12.1	0.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF20
UTP15_C	PF09384.5	gi|379004351|ref|YP_005260023.1|	-	0.056	13.1	0.7	0.1	12.2	0.5	1.4	1	0	0	1	1	1	0	UTP15	C	terminal
Syntaxin-6_N	PF09177.6	gi|379004351|ref|YP_005260023.1|	-	0.057	13.8	1.8	0.11	12.8	1.2	1.4	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
Prominin	PF05478.6	gi|379004351|ref|YP_005260023.1|	-	0.062	10.8	2.3	0.085	10.3	1.6	1.1	1	0	0	1	1	1	0	Prominin
Med10	PF09748.4	gi|379004351|ref|YP_005260023.1|	-	0.063	13.1	1.0	0.12	12.2	0.7	1.3	1	0	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
DUF972	PF06156.8	gi|379004351|ref|YP_005260023.1|	-	0.069	13.5	1.4	0.11	12.8	1.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Cluap1	PF10234.4	gi|379004351|ref|YP_005260023.1|	-	0.075	12.2	3.8	0.12	11.5	2.7	1.2	1	0	0	1	1	1	0	Clusterin-associated	protein-1
Aldolase_2	PF10120.4	gi|379004351|ref|YP_005260023.1|	-	0.084	12.2	0.0	0.16	11.3	0.0	1.5	1	0	0	1	1	1	0	Putative	aldolase
APG6	PF04111.7	gi|379004351|ref|YP_005260023.1|	-	0.088	11.8	4.3	0.13	11.3	3.0	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Med9	PF07544.8	gi|379004351|ref|YP_005260023.1|	-	0.088	12.5	7.3	0.21	11.3	5.0	1.6	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF16	PF01519.11	gi|379004351|ref|YP_005260023.1|	-	0.088	13.0	4.4	0.16	12.2	3.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
Me-amine-dh_H	PF06433.6	gi|379004351|ref|YP_005260023.1|	-	0.093	11.3	0.0	9.9	4.6	0.0	2.2	2	0	0	2	2	2	0	Methylamine	dehydrogenase	heavy	chain	(MADH)
Peptidase_S49_N	PF08496.5	gi|379004351|ref|YP_005260023.1|	-	0.095	12.4	1.4	0.14	11.9	1.0	1.2	1	0	0	1	1	1	0	Peptidase	family	S49	N-terminal
PspA_IM30	PF04012.7	gi|379004351|ref|YP_005260023.1|	-	0.096	12.0	10.8	0.13	11.5	7.5	1.1	1	0	0	1	1	1	0	PspA/IM30	family
DUF3316	PF11777.3	gi|379004351|ref|YP_005260023.1|	-	0.11	12.3	0.8	0.18	11.5	0.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3316)
RmuC	PF02646.11	gi|379004351|ref|YP_005260023.1|	-	0.11	11.3	3.4	0.16	10.7	2.4	1.1	1	0	0	1	1	1	0	RmuC	family
FlaC_arch	PF05377.6	gi|379004351|ref|YP_005260023.1|	-	0.11	12.4	3.5	0.12	12.3	1.5	1.8	2	0	0	2	2	1	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.10	gi|379004351|ref|YP_005260023.1|	-	0.12	11.9	15.9	0.23	10.9	2.1	3.4	2	1	1	3	3	3	0	Septum	formation	initiator
Vps5	PF09325.5	gi|379004351|ref|YP_005260023.1|	-	0.12	11.6	5.9	0.17	11.1	2.6	1.9	1	1	1	2	2	2	0	Vps5	C	terminal	like
XhlA	PF10779.4	gi|379004351|ref|YP_005260023.1|	-	0.13	12.1	3.5	0.24	11.3	2.4	1.4	1	0	0	1	1	1	0	Haemolysin	XhlA
Rotamase	PF00639.16	gi|379004351|ref|YP_005260023.1|	-	0.14	12.9	0.3	1.2	9.8	0.6	2.1	2	0	0	2	2	1	0	PPIC-type	PPIASE	domain
Reo_sigmaC	PF04582.7	gi|379004351|ref|YP_005260023.1|	-	0.15	11.2	0.8	0.21	10.7	0.5	1.1	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
V_ATPase_I	PF01496.14	gi|379004351|ref|YP_005260023.1|	-	0.17	9.6	1.4	0.24	9.2	1.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
bZIP_1	PF00170.16	gi|379004351|ref|YP_005260023.1|	-	0.18	11.8	3.7	0.34	10.8	2.6	1.5	1	0	0	1	1	1	0	bZIP	transcription	factor
M_domain	PF12938.2	gi|379004351|ref|YP_005260023.1|	-	0.21	11.3	5.2	0.32	10.7	3.6	1.1	1	0	0	1	1	1	0	M	domain	of	GW182
DUF342	PF03961.8	gi|379004351|ref|YP_005260023.1|	-	0.24	9.7	2.0	0.37	9.1	1.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DivIVA	PF05103.8	gi|379004351|ref|YP_005260023.1|	-	0.25	11.3	9.2	0.83	9.7	6.5	1.7	1	1	0	1	1	1	0	DivIVA	protein
Fmp27_WPPW	PF10359.4	gi|379004351|ref|YP_005260023.1|	-	0.26	9.6	2.3	0.37	9.1	1.6	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Bap31	PF05529.7	gi|379004351|ref|YP_005260023.1|	-	0.27	10.6	6.5	0.39	10.1	4.5	1.2	1	0	0	1	1	1	0	B-cell	receptor-associated	protein	31-like
DUF4140	PF13600.1	gi|379004351|ref|YP_005260023.1|	-	0.28	11.6	7.5	0.32	11.4	3.4	2.1	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
NPV_P10	PF05531.7	gi|379004351|ref|YP_005260023.1|	-	0.29	11.3	5.8	1.6	9.0	4.0	2.1	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Myosin_tail_1	PF01576.14	gi|379004351|ref|YP_005260023.1|	-	0.32	8.6	6.5	0.43	8.2	4.5	1.0	1	0	0	1	1	1	0	Myosin	tail
BLOC1_2	PF10046.4	gi|379004351|ref|YP_005260023.1|	-	0.54	10.4	6.8	1.5	8.9	4.6	1.7	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Phage_GP20	PF06810.6	gi|379004351|ref|YP_005260023.1|	-	0.57	9.6	8.6	2.9	7.3	6.0	1.8	1	1	0	1	1	1	0	Phage	minor	structural	protein	GP20
Prefoldin	PF02996.12	gi|379004351|ref|YP_005260023.1|	-	0.66	9.6	8.3	2.6	7.7	4.0	2.1	1	1	1	2	2	2	0	Prefoldin	subunit
TMF_TATA_bd	PF12325.3	gi|379004351|ref|YP_005260023.1|	-	0.73	9.5	7.0	1.9	8.2	0.6	2.1	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
MbeD_MobD	PF04899.7	gi|379004351|ref|YP_005260023.1|	-	0.98	9.3	6.2	1.7	8.6	4.3	1.3	1	0	0	1	1	1	0	MbeD/MobD	like
DUF4407	PF14362.1	gi|379004351|ref|YP_005260023.1|	-	1.2	8.0	5.0	1.9	7.3	3.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
DUF2802	PF10975.3	gi|379004351|ref|YP_005260023.1|	-	1.4	8.7	7.2	3.7	7.3	0.2	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2802)
DUF904	PF06005.7	gi|379004351|ref|YP_005260023.1|	-	1.5	9.1	9.1	4.1	7.7	6.3	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
DUF4201	PF13870.1	gi|379004351|ref|YP_005260023.1|	-	1.8	7.9	8.2	2.9	7.2	0.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4201)
HR1	PF02185.11	gi|379004351|ref|YP_005260023.1|	-	2.5	7.8	11.9	7.2	6.4	1.9	2.2	1	1	1	2	2	2	0	Hr1	repeat
Prefoldin_2	PF01920.15	gi|379004351|ref|YP_005260023.1|	-	2.5	7.8	12.4	0.68	9.7	2.7	2.2	1	1	1	2	2	2	0	Prefoldin	subunit
Spc24	PF08286.6	gi|379004351|ref|YP_005260023.1|	-	2.9	7.6	7.0	12	5.6	3.7	2.3	2	1	0	2	2	2	0	Spc24	subunit	of	Ndc80
Pyr_redox_2	PF07992.9	gi|379004353|ref|YP_005260025.1|	-	5.5e-11	42.7	0.0	5.3e-10	39.5	0.0	2.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379004353|ref|YP_005260025.1|	-	0.0069	15.3	1.6	0.011	14.6	0.6	1.7	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379004353|ref|YP_005260025.1|	-	0.048	12.5	0.1	0.063	12.1	0.1	1.2	1	0	0	1	1	1	0	Lycopene	cyclase	protein
FAD_binding_3	PF01494.14	gi|379004353|ref|YP_005260025.1|	-	0.12	11.4	1.0	0.17	10.9	0.7	1.2	1	0	0	1	1	1	0	FAD	binding	domain
PALP	PF00291.20	gi|379004356|ref|YP_005260028.1|	-	1.5e-72	244.4	3.1	1.7e-72	244.2	2.1	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Pyr_redox_2	PF07992.9	gi|379004356|ref|YP_005260028.1|	-	0.025	14.4	1.2	0.056	13.3	0.1	2.0	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
AA_kinase	PF00696.23	gi|379004357|ref|YP_005260029.1|	-	9.5e-40	136.6	0.0	1.1e-39	136.4	0.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Semialdhyde_dh	PF01118.19	gi|379004358|ref|YP_005260030.1|	-	1.3e-35	122.2	0.0	2.5e-35	121.3	0.0	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|379004358|ref|YP_005260030.1|	-	4.3e-33	114.7	0.0	6.7e-33	114.0	0.0	1.3	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
DXP_reductoisom	PF02670.11	gi|379004358|ref|YP_005260030.1|	-	0.0036	17.8	0.1	0.01	16.3	0.0	1.7	2	0	0	2	2	2	1	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
GFO_IDH_MocA	PF01408.17	gi|379004358|ref|YP_005260030.1|	-	0.0053	17.2	0.0	0.012	16.1	0.0	1.6	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.15	gi|379004358|ref|YP_005260030.1|	-	0.0063	16.4	0.0	0.012	15.5	0.0	1.5	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.1	gi|379004358|ref|YP_005260030.1|	-	0.021	14.8	0.1	0.15	12.0	0.0	2.3	3	0	0	3	3	3	0	NADH(P)-binding
Gp_dh_C	PF02800.15	gi|379004358|ref|YP_005260030.1|	-	0.12	11.7	0.2	0.43	10.0	0.1	1.9	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
TrmB	PF01978.14	gi|379004359|ref|YP_005260031.1|	-	2.9e-06	26.8	0.0	5.3e-06	26.0	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379004359|ref|YP_005260031.1|	-	0.0029	17.2	0.0	0.005	16.5	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|379004359|ref|YP_005260031.1|	-	0.05	13.2	0.0	0.1	12.2	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FdhD-NarQ	PF02634.10	gi|379004360|ref|YP_005260032.1|	-	9e-30	103.8	0.1	1.6e-29	103.0	0.1	1.3	1	1	0	1	1	1	1	FdhD/NarQ	family
YwhD	PF08741.5	gi|379004360|ref|YP_005260032.1|	-	0.02	14.2	0.0	0.028	13.8	0.0	1.2	1	0	0	1	1	1	0	YwhD	family
Molybdopterin	PF00384.17	gi|379004362|ref|YP_005260034.1|	-	1.8e-46	158.7	0.0	3.1e-44	151.4	0.0	3.3	2	1	0	2	2	2	1	Molybdopterin	oxidoreductase
Molybdop_Fe4S4	PF04879.11	gi|379004362|ref|YP_005260034.1|	-	1.7e-15	56.5	0.1	3.3e-15	55.6	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Molydop_binding	PF01568.16	gi|379004362|ref|YP_005260034.1|	-	4.2e-13	49.0	0.0	1e-12	47.8	0.0	1.6	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Antitoxin-MazE	PF04014.13	gi|379004362|ref|YP_005260034.1|	-	0.00024	20.7	1.0	0.0054	16.4	0.0	2.9	3	0	0	3	3	3	1	Antidote-toxin	recognition	MazE
Fer4_11	PF13247.1	gi|379004363|ref|YP_005260035.1|	-	2.2e-28	98.0	12.6	2.9e-26	91.2	6.7	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004363|ref|YP_005260035.1|	-	2.2e-18	66.3	41.9	4.6e-09	36.5	0.3	3.7	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004363|ref|YP_005260035.1|	-	4.5e-17	62.0	20.1	1.7e-08	34.6	8.1	3.3	2	2	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004363|ref|YP_005260035.1|	-	4.3e-14	52.0	27.8	5.4e-09	35.7	6.9	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004363|ref|YP_005260035.1|	-	1.3e-13	49.8	43.5	1e-07	31.2	4.2	5.2	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379004363|ref|YP_005260035.1|	-	2.7e-12	45.8	36.2	4.7e-06	26.2	0.8	4.6	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379004363|ref|YP_005260035.1|	-	1.2e-11	43.9	40.8	2.4e-05	23.9	3.2	4.8	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004363|ref|YP_005260035.1|	-	4.9e-09	36.0	22.9	1.1e-06	28.5	1.5	3.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379004363|ref|YP_005260035.1|	-	1.4e-08	34.6	43.1	0.0014	19.0	1.9	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004363|ref|YP_005260035.1|	-	1.9e-08	34.0	23.5	2.1e-05	24.2	6.2	3.4	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004363|ref|YP_005260035.1|	-	1.7e-07	30.9	35.5	0.001	19.2	2.4	4.5	5	0	0	5	5	4	3	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379004363|ref|YP_005260035.1|	-	6.8e-07	29.7	26.7	0.0058	17.1	0.5	4.4	3	1	1	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|379004363|ref|YP_005260035.1|	-	1.7e-05	25.4	24.3	1.6	9.5	0.0	4.9	3	1	2	5	5	5	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|379004363|ref|YP_005260035.1|	-	6e-05	23.3	25.3	0.33	11.3	0.2	4.5	3	2	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004363|ref|YP_005260035.1|	-	0.0011	19.2	22.3	0.032	14.6	1.7	4.5	4	0	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379004363|ref|YP_005260035.1|	-	0.0026	18.0	28.4	0.024	15.0	0.8	4.2	3	1	1	4	4	4	2	4Fe-4S	single	cluster	domain
Cytochrom_B_N	PF00033.14	gi|379004364|ref|YP_005260036.1|	-	1.6e-19	69.9	13.8	1.9e-19	69.7	9.6	1.0	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|379004364|ref|YP_005260036.1|	-	1.5e-16	60.2	12.5	1.8e-16	60.0	8.6	1.0	1	0	0	1	1	1	1	Prokaryotic	cytochrome	b561
Tetraspannin	PF00335.15	gi|379004364|ref|YP_005260036.1|	-	0.0044	16.3	1.0	0.0044	16.3	0.7	2.1	2	0	0	2	2	2	1	Tetraspanin	family
DUF4225	PF13988.1	gi|379004364|ref|YP_005260036.1|	-	0.07	12.5	1.6	0.4	10.1	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4225)
MNSV_P7B	PF06692.6	gi|379004364|ref|YP_005260036.1|	-	0.59	9.9	2.7	13	5.6	0.8	2.7	2	0	0	2	2	2	0	Melon	necrotic	spot	virus	P7B	protein
DUF2754	PF10953.3	gi|379004364|ref|YP_005260036.1|	-	8.1	6.5	7.5	3	7.9	0.6	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2754)
Rubredoxin	PF00301.15	gi|379004365|ref|YP_005260037.1|	-	9.9e-05	22.1	5.6	0.053	13.4	0.2	3.3	3	0	0	3	3	3	2	Rubredoxin
FdhE	PF04216.7	gi|379004365|ref|YP_005260037.1|	-	0.0038	16.9	1.7	0.0054	16.4	1.2	1.2	1	0	0	1	1	1	1	Protein	involved	in	formate	dehydrogenase	formation
UPF0547	PF10571.4	gi|379004365|ref|YP_005260037.1|	-	0.0077	15.9	6.1	1.6	8.4	0.1	3.5	3	0	0	3	3	3	2	Uncharacterised	protein	family	UPF0547
zf-TFIIB	PF13453.1	gi|379004365|ref|YP_005260037.1|	-	0.043	12.9	1.7	0.13	11.4	0.5	2.3	2	1	0	2	2	2	0	Transcription	factor	zinc-finger
DUF2387	PF09526.5	gi|379004365|ref|YP_005260037.1|	-	0.054	13.4	0.1	0.14	12.1	0.1	1.7	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.2	gi|379004365|ref|YP_005260037.1|	-	0.075	12.8	7.6	0.13	12.1	3.7	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Elf1	PF05129.8	gi|379004365|ref|YP_005260037.1|	-	0.081	12.6	2.7	0.89	9.2	0.1	2.6	1	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
zf-H2C2_2	PF13465.1	gi|379004365|ref|YP_005260037.1|	-	0.16	12.3	4.7	1.1	9.7	0.2	3.0	3	0	0	3	3	3	0	Zinc-finger	double	domain
OrfB_Zn_ribbon	PF07282.6	gi|379004365|ref|YP_005260037.1|	-	0.17	11.5	3.4	0.24	11.1	0.5	2.3	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn-ribbon_8	PF09723.5	gi|379004365|ref|YP_005260037.1|	-	0.42	10.5	2.7	22	5.0	0.1	3.6	3	0	0	3	3	3	0	Zinc	ribbon	domain
DZR	PF12773.2	gi|379004365|ref|YP_005260037.1|	-	0.97	9.2	6.9	1.1e+02	2.7	4.9	3.0	1	1	0	1	1	1	0	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.8	gi|379004365|ref|YP_005260037.1|	-	1.5	8.3	0.0	1.5	8.3	0.0	4.0	5	0	0	5	5	5	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
TFIIS_C	PF01096.13	gi|379004365|ref|YP_005260037.1|	-	2.4	7.8	5.9	4.6	6.9	0.1	3.4	4	0	0	4	4	4	0	Transcription	factor	S-II	(TFIIS)
Zn_ribbon_recom	PF13408.1	gi|379004365|ref|YP_005260037.1|	-	2.5	8.4	6.5	19	5.6	0.7	2.8	1	1	1	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Ribosomal_L37ae	PF01780.14	gi|379004365|ref|YP_005260037.1|	-	2.5	8.0	4.3	32	4.4	0.1	2.7	1	1	2	3	3	3	0	Ribosomal	L37ae	protein	family
zf-HIT	PF04438.11	gi|379004365|ref|YP_005260037.1|	-	5.6	6.7	11.0	11	5.7	0.5	3.4	3	0	0	3	3	3	0	HIT	zinc	finger
zf-C2H2	PF00096.21	gi|379004365|ref|YP_005260037.1|	-	6.2	7.3	7.5	19	5.8	0.2	3.4	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
PaREP1	PF05942.6	gi|379004366|ref|YP_005260038.1|	-	5e-32	110.1	1.8	5.9e-32	109.9	1.3	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Homoserine_dh	PF00742.14	gi|379004367|ref|YP_005260039.1|	-	6.8e-38	130.1	0.0	2.8e-37	128.1	0.0	1.8	1	1	0	1	1	1	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.11	gi|379004367|ref|YP_005260039.1|	-	0.00015	22.1	0.0	0.00034	20.9	0.0	1.6	1	1	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|379004367|ref|YP_005260039.1|	-	0.00036	20.2	0.0	0.00059	19.4	0.0	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
DapB_N	PF01113.15	gi|379004367|ref|YP_005260039.1|	-	0.036	13.9	0.0	0.068	13.0	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
AMP-binding	PF00501.23	gi|379004368|ref|YP_005260040.1|	-	2.4e-98	329.2	0.0	2.9e-98	328.9	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379004368|ref|YP_005260040.1|	-	3.6e-25	88.6	0.3	9.6e-25	87.3	0.2	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Arch_ATPase	PF01637.13	gi|379004369|ref|YP_005260041.1|	-	6.3e-39	134.0	0.0	9.4e-39	133.4	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|379004369|ref|YP_005260041.1|	-	3.4e-07	30.4	0.4	5.3e-06	26.5	0.0	2.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379004369|ref|YP_005260041.1|	-	0.0022	18.1	0.0	0.0043	17.2	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|379004369|ref|YP_005260041.1|	-	0.0027	17.8	0.0	0.0061	16.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|379004369|ref|YP_005260041.1|	-	0.0051	16.4	0.0	0.0089	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
NACHT	PF05729.7	gi|379004369|ref|YP_005260041.1|	-	0.0063	16.1	0.0	0.027	14.1	0.0	2.0	2	0	0	2	2	2	1	NACHT	domain
NB-ARC	PF00931.17	gi|379004369|ref|YP_005260041.1|	-	0.0065	15.3	0.0	0.027	13.3	0.0	1.9	2	0	0	2	2	2	1	NB-ARC	domain
RNA_helicase	PF00910.17	gi|379004369|ref|YP_005260041.1|	-	0.0095	16.1	0.0	0.017	15.3	0.0	1.4	1	0	0	1	1	1	1	RNA	helicase
AAA_14	PF13173.1	gi|379004369|ref|YP_005260041.1|	-	0.012	15.4	0.0	0.026	14.3	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|379004369|ref|YP_005260041.1|	-	0.032	14.5	0.0	0.065	13.5	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.9	gi|379004369|ref|YP_005260041.1|	-	0.049	13.3	0.0	0.17	11.5	0.0	2.1	2	1	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
KAP_NTPase	PF07693.9	gi|379004369|ref|YP_005260041.1|	-	0.054	12.4	0.0	0.07	12.1	0.0	1.4	1	1	0	1	1	1	0	KAP	family	P-loop	domain
AAA_18	PF13238.1	gi|379004369|ref|YP_005260041.1|	-	0.059	13.6	0.1	0.45	10.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|379004369|ref|YP_005260041.1|	-	0.068	13.1	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|379004369|ref|YP_005260041.1|	-	0.071	13.6	0.0	0.2	12.1	0.0	1.8	2	0	0	2	2	1	0	Miro-like	protein
Sigma54_activ_2	PF14532.1	gi|379004369|ref|YP_005260041.1|	-	0.077	13.0	0.0	0.21	11.6	0.0	1.8	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|379004369|ref|YP_005260041.1|	-	0.087	13.6	1.5	0.3	11.9	0.1	2.3	2	2	0	2	2	2	0	AAA	domain
DUF86	PF01934.12	gi|379004370|ref|YP_005260042.1|	-	9e-11	41.4	0.0	1e-10	41.2	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.18	gi|379004371|ref|YP_005260043.1|	-	0.00052	20.2	0.2	0.00061	20.0	0.1	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
UPF0175	PF03683.8	gi|379004372|ref|YP_005260044.1|	-	0.0073	15.7	0.3	0.015	14.7	0.2	1.7	1	1	0	1	1	1	1	Uncharacterised	protein	family	(UPF0175)
RNase_T	PF00929.19	gi|379004374|ref|YP_005260046.1|	-	9.6e-06	25.9	0.4	1.2e-05	25.6	0.3	1.1	1	0	0	1	1	1	1	Exonuclease
CBS	PF00571.23	gi|379004375|ref|YP_005260047.1|	-	9.2e-22	76.5	0.9	3.3e-12	45.9	0.1	2.7	2	0	0	2	2	2	2	CBS	domain
DUF294	PF03445.8	gi|379004375|ref|YP_005260047.1|	-	3e-20	72.2	0.0	5.4e-20	71.4	0.0	1.4	1	0	0	1	1	1	1	Putative	nucleotidyltransferase	DUF294
DUF294_C	PF10335.4	gi|379004375|ref|YP_005260047.1|	-	4.6e-07	29.5	0.0	1.3e-06	28.1	0.0	1.7	1	1	0	1	1	1	1	Putative	nucleotidyltransferase	substrate	binding	domain
DUF1951	PF09188.5	gi|379004375|ref|YP_005260047.1|	-	0.09	12.7	0.0	0.32	10.9	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1951)
DUF4212	PF13937.1	gi|379004377|ref|YP_005260049.1|	-	1.7e-13	50.3	1.7	2e-13	50.1	1.2	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4212)
DUF485	PF04341.7	gi|379004377|ref|YP_005260049.1|	-	0.003	17.2	1.0	0.004	16.8	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF485
Claudin_2	PF13903.1	gi|379004377|ref|YP_005260049.1|	-	0.025	14.2	0.2	0.027	14.1	0.1	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF4231	PF14015.1	gi|379004377|ref|YP_005260049.1|	-	0.09	12.7	1.0	0.12	12.4	0.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
DUF3955	PF13127.1	gi|379004377|ref|YP_005260049.1|	-	0.13	11.7	0.3	0.13	11.7	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3955)
FeoB_C	PF07664.7	gi|379004377|ref|YP_005260049.1|	-	0.14	11.5	6.0	0.68	9.4	0.1	2.5	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
FtsX	PF02687.16	gi|379004377|ref|YP_005260049.1|	-	0.23	11.2	6.7	0.28	10.9	4.6	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
DUF2207	PF09972.4	gi|379004377|ref|YP_005260049.1|	-	0.29	9.6	1.3	0.33	9.5	0.9	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
CCSMST1	PF15013.1	gi|379004377|ref|YP_005260049.1|	-	0.3	11.0	2.2	2.1	8.3	0.0	2.0	2	0	0	2	2	2	0	CCSMST1	family
DUF2628	PF10947.3	gi|379004377|ref|YP_005260049.1|	-	0.3	10.8	2.3	0.38	10.5	1.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
DUF3671	PF12420.3	gi|379004377|ref|YP_005260049.1|	-	0.4	10.6	3.3	0.52	10.3	2.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function
DUF997	PF06196.7	gi|379004377|ref|YP_005260049.1|	-	0.55	9.7	4.6	0.79	9.2	3.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF997)
Gemini_mov	PF01708.11	gi|379004377|ref|YP_005260049.1|	-	1.1	8.9	4.1	1.4	8.4	0.4	2.0	2	0	0	2	2	2	0	Geminivirus	putative	movement	protein
SSF	PF00474.12	gi|379004378|ref|YP_005260050.1|	-	3.4e-49	167.5	31.2	1.9e-36	125.6	12.8	3.1	3	0	0	3	3	3	2	Sodium:solute	symporter	family
Asp_protease_2	PF13650.1	gi|379004379|ref|YP_005260051.1|	-	0.002	18.5	0.0	0.0022	18.4	0.0	1.0	1	0	0	1	1	1	1	Aspartyl	protease
CBS	PF00571.23	gi|379004380|ref|YP_005260052.1|	-	1.3e-29	101.6	2.3	1.9e-15	56.3	0.5	2.1	2	0	0	2	2	2	2	CBS	domain
Molybdopterin	PF00384.17	gi|379004381|ref|YP_005260053.1|	-	2.2e-50	171.6	0.0	8.4e-50	169.7	0.0	1.8	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379004381|ref|YP_005260053.1|	-	3.2e-12	46.2	0.0	6.5e-12	45.2	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|379004381|ref|YP_005260053.1|	-	0.0045	16.7	0.0	0.0089	15.8	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
CDC48_N	PF02359.13	gi|379004381|ref|YP_005260053.1|	-	0.017	15.0	0.1	0.037	13.9	0.0	1.5	1	0	0	1	1	1	0	Cell	division	protein	48	(CDC48),	N-terminal	domain
YcgL	PF05166.8	gi|379004381|ref|YP_005260053.1|	-	0.072	13.2	0.2	0.25	11.5	0.1	1.9	2	0	0	2	2	2	0	YcgL	domain
Fer4_11	PF13247.1	gi|379004382|ref|YP_005260054.1|	-	2.9e-24	84.8	9.9	2.9e-24	84.8	6.9	2.0	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004382|ref|YP_005260054.1|	-	5e-18	65.2	22.0	2.3e-09	37.4	5.5	2.5	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004382|ref|YP_005260054.1|	-	4e-14	51.5	37.7	2.7e-07	29.9	2.1	5.3	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379004382|ref|YP_005260054.1|	-	3.9e-13	48.6	37.8	3.7e-06	26.5	1.3	4.4	5	0	0	5	5	4	4	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004382|ref|YP_005260054.1|	-	5.6e-13	48.9	22.1	6.3e-07	29.5	4.4	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004382|ref|YP_005260054.1|	-	1.6e-11	43.8	49.8	1.4e-05	24.7	8.2	3.5	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004382|ref|YP_005260054.1|	-	2.9e-11	42.5	36.5	7.7e-06	25.5	1.3	4.7	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379004382|ref|YP_005260054.1|	-	2e-08	33.8	33.3	0.00066	19.8	1.9	4.4	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004382|ref|YP_005260054.1|	-	3e-07	30.5	45.2	0.029	14.8	1.6	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004382|ref|YP_005260054.1|	-	3e-07	30.3	24.7	6.2e-05	22.9	4.9	2.9	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004382|ref|YP_005260054.1|	-	8e-07	29.3	22.7	0.028	14.7	6.9	3.8	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004382|ref|YP_005260054.1|	-	1.4e-06	28.9	23.0	0.31	11.7	8.2	4.0	2	1	2	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379004382|ref|YP_005260054.1|	-	0.00012	21.8	31.7	0.015	15.1	6.7	3.6	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004382|ref|YP_005260054.1|	-	0.0014	18.9	27.3	0.28	11.6	1.1	4.3	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379004382|ref|YP_005260054.1|	-	0.086	13.4	1.3	0.086	13.4	0.9	3.9	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
DUF1364	PF07102.7	gi|379004382|ref|YP_005260054.1|	-	4.4	7.2	6.9	0.55	10.1	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1364)
NrfD	PF03916.9	gi|379004383|ref|YP_005260055.1|	-	3.4e-23	82.5	32.9	4.6e-23	82.1	22.8	1.1	1	0	0	1	1	1	1	Polysulphide	reductase,	NrfD
Gram_pos_anchor	PF00746.16	gi|379004383|ref|YP_005260055.1|	-	0.16	11.8	0.1	0.16	11.8	0.1	5.0	7	0	0	7	7	7	0	Gram	positive	anchor
KID	PF02524.9	gi|379004384|ref|YP_005260056.1|	-	0.00066	19.3	0.2	1.9	8.9	0.1	3.0	2	0	0	2	2	2	2	KID	repeat
Caps_synth	PF05704.7	gi|379004384|ref|YP_005260056.1|	-	0.0069	15.5	0.0	0.009	15.1	0.0	1.2	1	0	0	1	1	1	1	Capsular	polysaccharide	synthesis	protein
Gp-FAR-1	PF05823.7	gi|379004384|ref|YP_005260056.1|	-	0.016	15.1	0.4	0.16	11.9	0.0	2.0	1	1	1	2	2	2	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
Baculo_PEP_C	PF04513.7	gi|379004384|ref|YP_005260056.1|	-	0.021	14.6	0.1	0.033	13.9	0.0	1.3	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
zf-HC2	PF13490.1	gi|379004384|ref|YP_005260056.1|	-	0.14	12.1	0.7	0.31	11.0	0.5	1.7	1	0	0	1	1	1	0	Putative	zinc-finger
PaREP1	PF05942.6	gi|379004385|ref|YP_005260057.1|	-	3.6e-28	97.7	5.5	4.6e-28	97.3	3.8	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004385|ref|YP_005260057.1|	-	0.067	13.0	7.0	0.25	11.2	3.0	2.1	2	0	0	2	2	2	0	HEPN	domain
Peptidase_M24	PF00557.19	gi|379004385|ref|YP_005260057.1|	-	0.1	12.1	0.1	0.19	11.2	0.0	1.5	1	1	0	1	1	1	0	Metallopeptidase	family	M24
AAA_assoc	PF14363.1	gi|379004385|ref|YP_005260057.1|	-	0.1	12.6	0.4	0.25	11.4	0.2	1.8	1	1	0	2	2	2	0	Domain	associated	at	C-terminal	with	AAA
Cytochrome_C7	PF14522.1	gi|379004386|ref|YP_005260058.1|	-	2.4e-14	52.6	29.7	4.3e-06	26.2	5.2	3.4	1	1	1	3	3	3	3	Cytochrome	c7
Cytochrom_c3_2	PF14537.1	gi|379004386|ref|YP_005260058.1|	-	6e-08	32.9	35.7	0.0017	18.6	11.5	4.1	1	1	0	2	2	2	2	Cytochrome	c3
Cytochrom_CIII	PF02085.11	gi|379004386|ref|YP_005260058.1|	-	0.00017	21.6	34.1	0.021	14.9	7.8	4.1	1	1	3	4	4	4	4	Class	III	cytochrome	C	family
Cytochrome_C554	PF13435.1	gi|379004386|ref|YP_005260058.1|	-	0.0051	16.8	39.8	0.087	12.8	4.0	4.9	1	1	2	3	3	3	2	Cytochrome	c554	and	c-prime
DnaJ_CXXCXGXG	PF00684.14	gi|379004386|ref|YP_005260058.1|	-	0.0064	16.5	1.6	0.0064	16.5	1.1	3.9	3	2	0	3	3	3	1	DnaJ	central	domain
Paired_CXXCH_1	PF09699.5	gi|379004386|ref|YP_005260058.1|	-	0.031	13.7	47.5	0.52	9.8	4.9	7.4	2	1	5	7	7	7	0	Doubled	CXXCH	motif	(Paired_CXXCH_1)
DZR	PF12773.2	gi|379004386|ref|YP_005260058.1|	-	1	9.2	26.7	23	4.9	7.2	4.4	2	1	1	3	3	3	0	Double	zinc	ribbon
Cytochrom_NNT	PF03264.9	gi|379004386|ref|YP_005260058.1|	-	1.8	7.9	43.6	0.22	10.9	3.3	5.5	1	1	2	5	5	5	0	NapC/NirT	cytochrome	c	family,	N-terminal	region
Fer4_11	PF13247.1	gi|379004387|ref|YP_005260059.1|	-	2.2e-21	75.5	15.5	1.4e-19	69.7	8.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004387|ref|YP_005260059.1|	-	3.9e-13	49.5	27.9	3.8e-07	30.3	4.4	3.8	2	2	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004387|ref|YP_005260059.1|	-	1.3e-12	47.7	25.6	3.9e-07	30.2	8.0	3.0	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004387|ref|YP_005260059.1|	-	1e-11	43.8	45.8	3.8e-05	23.1	4.3	5.1	6	0	0	6	6	5	4	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379004387|ref|YP_005260059.1|	-	3.7e-10	39.2	41.9	6.1e-05	22.7	1.5	5.0	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379004387|ref|YP_005260059.1|	-	8.6e-10	38.2	30.9	5.9e-05	22.7	10.5	3.1	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004387|ref|YP_005260059.1|	-	2.8e-09	36.3	41.4	7.2e-06	25.6	1.5	4.7	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004387|ref|YP_005260059.1|	-	1.8e-08	34.3	45.8	0.00035	20.9	2.8	4.3	4	0	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379004387|ref|YP_005260059.1|	-	1.2e-06	28.3	39.4	0.0035	17.5	1.6	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004387|ref|YP_005260059.1|	-	1.5e-06	28.1	28.5	7.2e-06	25.9	3.5	3.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004387|ref|YP_005260059.1|	-	0.00017	22.2	33.4	0.021	15.5	0.0	4.4	3	2	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|379004387|ref|YP_005260059.1|	-	0.0022	18.4	0.7	0.0022	18.4	0.5	3.8	3	1	0	3	3	2	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|379004387|ref|YP_005260059.1|	-	0.0024	18.1	28.0	0.026	14.8	5.3	3.8	1	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379004387|ref|YP_005260059.1|	-	0.019	14.8	33.1	0.19	11.6	7.0	4.0	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004387|ref|YP_005260059.1|	-	5.9	7.3	36.6	0.15	12.5	0.7	4.6	3	2	3	6	6	5	0	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|379004388|ref|YP_005260060.1|	-	7.5e-26	89.9	11.8	8e-26	89.8	5.4	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004388|ref|YP_005260060.1|	-	2e-13	50.4	26.5	2.5e-07	30.9	6.5	2.8	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004388|ref|YP_005260060.1|	-	3.2e-11	42.3	33.1	1.2e-06	27.9	0.9	5.2	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004388|ref|YP_005260060.1|	-	5.8e-10	39.2	28.9	1e-05	25.6	6.5	3.4	1	1	3	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004388|ref|YP_005260060.1|	-	5.3e-08	32.5	30.5	4.3e-05	23.2	6.4	3.4	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004388|ref|YP_005260060.1|	-	5.5e-08	32.3	32.3	0.00037	20.2	0.6	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004388|ref|YP_005260060.1|	-	1.3e-07	31.6	40.3	0.027	14.9	4.6	4.5	4	1	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379004388|ref|YP_005260060.1|	-	1.5e-07	30.9	30.0	0.00016	21.4	0.9	4.7	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379004388|ref|YP_005260060.1|	-	2.7e-06	27.6	21.4	0.0015	18.7	4.7	3.4	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004388|ref|YP_005260060.1|	-	6.4e-06	26.0	35.7	0.00045	20.3	2.1	4.4	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004388|ref|YP_005260060.1|	-	0.00016	21.6	27.2	0.00036	20.5	5.0	3.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379004388|ref|YP_005260060.1|	-	0.00066	19.4	24.5	0.0011	18.7	4.0	3.5	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379004388|ref|YP_005260060.1|	-	0.015	15.8	18.6	0.057	13.9	0.2	3.6	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|379004388|ref|YP_005260060.1|	-	0.046	14.4	28.6	8.1	7.2	4.0	4.3	2	2	2	4	4	4	0	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|379004388|ref|YP_005260060.1|	-	3.2	8.2	30.6	1.3	9.4	1.9	4.5	2	2	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|379004388|ref|YP_005260060.1|	-	8.8	6.0	17.4	0.38	10.3	0.5	3.9	4	0	0	4	4	4	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
NrfD	PF03916.9	gi|379004389|ref|YP_005260061.1|	-	2.5e-18	66.5	36.8	4.6e-18	65.6	25.5	1.3	1	1	0	1	1	1	1	Polysulphide	reductase,	NrfD
Cytochrome_C7	PF14522.1	gi|379004391|ref|YP_005260063.1|	-	6.5e-15	54.5	47.4	1.1e-06	28.1	1.1	3.8	1	1	4	5	5	5	5	Cytochrome	c7
Cytochrom_c3_2	PF14537.1	gi|379004391|ref|YP_005260063.1|	-	8e-12	45.3	22.0	1.8e-07	31.4	6.9	4.3	3	1	1	4	4	4	3	Cytochrome	c3
Paired_CXXCH_1	PF09699.5	gi|379004391|ref|YP_005260063.1|	-	3.5e-11	42.4	24.1	0.01	15.3	1.9	6.6	4	3	2	6	6	6	5	Doubled	CXXCH	motif	(Paired_CXXCH_1)
Cytochrom_CIII	PF02085.11	gi|379004391|ref|YP_005260063.1|	-	4e-08	33.2	22.4	0.00039	20.4	6.6	3.5	2	1	1	3	3	3	3	Class	III	cytochrome	C	family
Cytochrom_NNT	PF03264.9	gi|379004391|ref|YP_005260063.1|	-	3.8e-07	29.6	25.9	4.5e-05	22.9	0.3	4.3	2	2	1	4	4	4	3	NapC/NirT	cytochrome	c	family,	N-terminal	region
Cytochrome_C554	PF13435.1	gi|379004391|ref|YP_005260063.1|	-	0.00026	21.0	32.1	0.34	10.9	14.2	4.9	1	1	2	3	3	3	2	Cytochrome	c554	and	c-prime
zf-AD	PF07776.10	gi|379004391|ref|YP_005260063.1|	-	0.12	12.4	5.1	0.33	10.9	0.5	2.8	2	1	0	2	2	2	0	Zinc-finger	associated	domain	(zf-AD)
Lon_C	PF05362.8	gi|379004392|ref|YP_005260064.1|	-	4.7e-08	32.6	0.0	1.3e-07	31.1	0.0	1.7	2	0	0	2	2	2	1	Lon	protease	(S16)	C-terminal	proteolytic	domain
Cytochrome_C7	PF14522.1	gi|379004393|ref|YP_005260065.1|	-	0.013	15.1	11.2	16	5.1	6.9	3.2	2	1	0	2	2	2	0	Cytochrome	c7
Cytochrome_C554	PF13435.1	gi|379004393|ref|YP_005260065.1|	-	0.023	14.7	10.0	0.42	10.6	5.3	2.8	2	1	1	3	3	3	0	Cytochrome	c554	and	c-prime
Cytochrom_c3_2	PF14537.1	gi|379004393|ref|YP_005260065.1|	-	0.2	12.0	7.3	24	5.3	5.3	2.8	2	1	0	2	2	2	0	Cytochrome	c3
Cytochrom_C_asm	PF01578.15	gi|379004395|ref|YP_005260067.1|	-	4.5e-17	62.3	20.8	4.5e-17	62.3	14.4	4.1	2	1	0	3	3	3	1	Cytochrome	C	assembly	protein
Cytochrom_C_asm	PF01578.15	gi|379004397|ref|YP_005260069.1|	-	1e-09	38.2	10.1	1e-09	38.2	7.0	2.1	2	0	0	2	2	2	1	Cytochrome	C	assembly	protein
DUF679	PF05078.7	gi|379004397|ref|YP_005260069.1|	-	0.24	11.0	1.5	3.5	7.2	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF679)
SUR7	PF06687.7	gi|379004397|ref|YP_005260069.1|	-	6.5	6.2	14.9	0.96	8.9	3.3	2.5	2	0	0	2	2	2	0	SUR7/PalI	family
DUF4431	PF14485.1	gi|379004398|ref|YP_005260070.1|	-	0.14	11.8	0.1	0.2	11.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4431)
ABC_tran	PF00005.22	gi|379004399|ref|YP_005260071.1|	-	6.4e-21	75.0	0.0	9.8e-21	74.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004399|ref|YP_005260071.1|	-	3.1e-09	37.2	0.0	9.3e-05	22.5	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|379004399|ref|YP_005260071.1|	-	0.00022	20.9	0.8	0.0004	20.0	0.6	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_29	PF13555.1	gi|379004399|ref|YP_005260071.1|	-	0.00024	20.5	0.0	0.00039	19.8	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|379004399|ref|YP_005260071.1|	-	0.00056	19.7	0.0	0.0024	17.7	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|379004399|ref|YP_005260071.1|	-	0.00068	19.2	0.1	0.001	18.6	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_23	PF13476.1	gi|379004399|ref|YP_005260071.1|	-	0.0031	17.8	0.0	0.0043	17.4	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379004399|ref|YP_005260071.1|	-	0.0031	17.7	0.1	0.0045	17.1	0.1	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MobB	PF03205.9	gi|379004399|ref|YP_005260071.1|	-	0.0035	17.0	0.2	0.0049	16.5	0.1	1.2	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NACHT	PF05729.7	gi|379004399|ref|YP_005260071.1|	-	0.0055	16.3	0.1	0.011	15.3	0.0	1.5	2	0	0	2	2	2	1	NACHT	domain
SRP54	PF00448.17	gi|379004399|ref|YP_005260071.1|	-	0.0057	16.1	0.0	0.061	12.7	0.1	2.0	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
SMC_N	PF02463.14	gi|379004399|ref|YP_005260071.1|	-	0.0069	15.6	0.0	0.036	13.2	0.0	1.8	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_5	PF07728.9	gi|379004399|ref|YP_005260071.1|	-	0.0072	16.0	0.1	0.012	15.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.7	gi|379004399|ref|YP_005260071.1|	-	0.008	15.2	0.0	0.011	14.7	0.0	1.1	1	0	0	1	1	1	1	Zeta	toxin
AAA_16	PF13191.1	gi|379004399|ref|YP_005260071.1|	-	0.01	15.8	0.1	0.017	15.0	0.1	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|379004399|ref|YP_005260071.1|	-	0.013	16.3	0.0	0.021	15.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379004399|ref|YP_005260071.1|	-	0.018	15.1	0.0	0.05	13.7	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Lambda_CIII	PF02061.11	gi|379004399|ref|YP_005260071.1|	-	0.019	14.9	0.6	0.063	13.2	0.0	2.1	2	0	0	2	2	2	0	Lambda	Phage	CIII
DUF3584	PF12128.3	gi|379004399|ref|YP_005260071.1|	-	0.02	12.2	0.3	0.024	11.9	0.2	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_25	PF13481.1	gi|379004399|ref|YP_005260071.1|	-	0.026	13.9	0.1	0.093	12.1	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|379004399|ref|YP_005260071.1|	-	0.035	13.6	0.0	0.12	11.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Arch_ATPase	PF01637.13	gi|379004399|ref|YP_005260071.1|	-	0.043	13.5	0.0	0.065	12.9	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_13	PF13166.1	gi|379004399|ref|YP_005260071.1|	-	0.05	12.0	0.0	0.068	11.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|379004399|ref|YP_005260071.1|	-	0.066	12.6	0.2	0.092	12.1	0.1	1.2	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
RNA12	PF10443.4	gi|379004399|ref|YP_005260071.1|	-	0.067	11.6	0.1	0.088	11.2	0.1	1.1	1	0	0	1	1	1	0	RNA12	protein
DUF258	PF03193.11	gi|379004399|ref|YP_005260071.1|	-	0.08	12.1	0.1	0.13	11.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Mg_chelatase	PF01078.16	gi|379004399|ref|YP_005260071.1|	-	0.089	11.9	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
NB-ARC	PF00931.17	gi|379004399|ref|YP_005260071.1|	-	0.091	11.6	0.2	0.13	11.0	0.1	1.1	1	0	0	1	1	1	0	NB-ARC	domain
AAA_14	PF13173.1	gi|379004399|ref|YP_005260071.1|	-	0.091	12.6	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|379004399|ref|YP_005260071.1|	-	0.11	12.2	0.2	0.17	11.6	0.1	1.3	1	0	0	1	1	1	0	NTPase
RuvB_N	PF05496.7	gi|379004399|ref|YP_005260071.1|	-	0.12	11.3	0.1	0.2	10.6	0.0	1.2	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
SbcCD_C	PF13558.1	gi|379004399|ref|YP_005260071.1|	-	0.13	12.1	0.0	0.21	11.5	0.0	1.3	1	0	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
T2SE	PF00437.15	gi|379004399|ref|YP_005260071.1|	-	0.15	10.9	0.1	0.21	10.4	0.1	1.1	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DsbD	PF02683.10	gi|379004401|ref|YP_005260073.1|	-	1.6e-12	47.5	21.4	5.3e-12	45.7	14.8	1.8	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DsbD_2	PF13386.1	gi|379004401|ref|YP_005260073.1|	-	5.4e-08	32.8	24.2	1e-07	31.8	16.8	1.5	1	0	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Thioredoxin_2	PF13098.1	gi|379004401|ref|YP_005260073.1|	-	0.0023	18.1	0.0	0.0042	17.2	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin-like	domain
GlutR_N	PF05201.10	gi|379004402|ref|YP_005260074.1|	-	4.5e-30	104.2	0.1	9.6e-30	103.1	0.0	1.6	2	0	0	2	2	2	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|379004402|ref|YP_005260074.1|	-	6.4e-18	65.1	0.3	1.3e-17	64.1	0.2	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|379004402|ref|YP_005260074.1|	-	3.7e-09	36.9	0.5	7.6e-09	35.8	0.0	1.8	2	0	0	2	2	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.1	gi|379004402|ref|YP_005260074.1|	-	6.3e-07	29.5	0.3	1.2e-06	28.6	0.2	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
NAD_binding_10	PF13460.1	gi|379004402|ref|YP_005260074.1|	-	7.1e-06	26.1	0.3	1.2e-05	25.4	0.2	1.4	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_2	PF03446.10	gi|379004402|ref|YP_005260074.1|	-	9.8e-05	22.2	0.0	0.00021	21.1	0.0	1.6	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
adh_short	PF00106.20	gi|379004402|ref|YP_005260074.1|	-	0.00035	20.5	0.1	0.00065	19.6	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
ThiF	PF00899.16	gi|379004402|ref|YP_005260074.1|	-	0.00058	19.6	3.2	0.0038	17.0	0.8	2.4	1	1	1	2	2	2	1	ThiF	family
TrkA_N	PF02254.13	gi|379004402|ref|YP_005260074.1|	-	0.0029	17.5	0.1	0.0075	16.2	0.1	1.7	1	0	0	1	1	1	1	TrkA-N	domain
KR	PF08659.5	gi|379004402|ref|YP_005260074.1|	-	0.0043	16.7	0.0	0.0077	15.9	0.0	1.4	1	0	0	1	1	1	1	KR	domain
2-Hacid_dh_C	PF02826.14	gi|379004402|ref|YP_005260074.1|	-	0.0095	15.1	0.0	0.019	14.1	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|379004402|ref|YP_005260074.1|	-	0.015	14.2	0.1	0.024	13.6	0.1	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|379004402|ref|YP_005260074.1|	-	0.031	13.6	0.0	0.058	12.7	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Epimerase	PF01370.16	gi|379004402|ref|YP_005260074.1|	-	0.063	12.7	0.0	0.095	12.1	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
Pyr_redox_3	PF13738.1	gi|379004402|ref|YP_005260074.1|	-	0.12	12.3	0.1	0.28	11.2	0.1	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AMP_N	PF05195.11	gi|379004402|ref|YP_005260074.1|	-	0.14	11.5	0.0	0.37	10.1	0.0	1.6	1	0	0	1	1	1	0	Aminopeptidase	P,	N-terminal	domain
GlutR_dimer	PF00745.15	gi|379004402|ref|YP_005260074.1|	-	0.41	10.6	4.1	0.95	9.4	2.0	2.3	1	1	1	2	2	2	0	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Molybdopterin	PF00384.17	gi|379004405|ref|YP_005260077.1|	-	2.5e-37	128.6	0.0	5.6e-37	127.5	0.0	1.5	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379004405|ref|YP_005260077.1|	-	5.5e-10	39.0	0.3	2.4e-08	33.7	0.2	2.6	1	1	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|379004405|ref|YP_005260077.1|	-	3.6e-09	36.2	0.4	9.1e-09	35.0	0.3	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.4	gi|379004405|ref|YP_005260077.1|	-	0.00061	19.5	4.7	0.00072	19.3	1.5	2.4	2	0	0	2	2	2	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Fer4_11	PF13247.1	gi|379004406|ref|YP_005260078.1|	-	8.1e-23	80.1	12.0	2.4e-13	49.8	2.6	3.1	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004406|ref|YP_005260078.1|	-	2.3e-20	72.6	21.4	4.9e-10	39.6	3.9	2.6	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004406|ref|YP_005260078.1|	-	1.3e-17	63.7	14.7	1.5e-10	41.2	0.5	2.5	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004406|ref|YP_005260078.1|	-	2.1e-15	55.8	35.6	8.6e-07	28.5	1.3	4.9	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379004406|ref|YP_005260078.1|	-	4.1e-15	55.3	19.3	2.5e-07	30.3	3.8	3.1	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004406|ref|YP_005260078.1|	-	4.6e-14	51.3	38.1	5.2e-08	32.1	2.0	5.5	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379004406|ref|YP_005260078.1|	-	2.5e-12	45.9	35.3	8e-07	28.6	1.2	4.9	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004406|ref|YP_005260078.1|	-	3.2e-12	46.2	13.7	3.8e-06	26.8	0.5	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004406|ref|YP_005260078.1|	-	4.9e-12	45.9	14.2	1.8e-05	24.9	0.5	3.4	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379004406|ref|YP_005260078.1|	-	1.9e-09	37.3	42.4	0.0007	19.9	1.1	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379004406|ref|YP_005260078.1|	-	6.2e-06	26.6	3.4	0.00048	20.6	0.1	3.7	4	1	0	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|379004406|ref|YP_005260078.1|	-	6.9e-06	25.9	37.9	0.00015	21.8	1.2	4.6	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004406|ref|YP_005260078.1|	-	0.0001	22.9	25.1	0.073	13.8	1.7	4.3	3	2	2	5	5	5	2	4Fe-4S	double	cluster	binding	domain
Fer4_18	PF13746.1	gi|379004406|ref|YP_005260078.1|	-	0.00016	22.0	28.4	0.032	14.6	1.1	4.4	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379004406|ref|YP_005260078.1|	-	0.00062	19.5	31.1	0.002	17.9	1.5	4.4	3	1	0	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379004406|ref|YP_005260078.1|	-	0.0068	16.7	0.4	0.0068	16.7	0.3	3.8	5	0	0	5	5	3	1	4Fe-4S	single	cluster	domain
NrfD	PF03916.9	gi|379004407|ref|YP_005260079.1|	-	6e-09	35.7	31.4	5.6e-08	32.5	21.8	2.0	1	1	0	1	1	1	1	Polysulphide	reductase,	NrfD
FixQ	PF05545.6	gi|379004407|ref|YP_005260079.1|	-	0.022	14.3	0.2	0.022	14.3	0.1	3.0	3	0	0	3	3	3	0	Cbb3-type	cytochrome	oxidase	component	FixQ
DUF3522	PF12036.3	gi|379004407|ref|YP_005260079.1|	-	0.49	10.1	5.0	0.31	10.8	0.2	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3522)
Pyr_redox_2	PF07992.9	gi|379004408|ref|YP_005260080.1|	-	9.6e-13	48.4	0.0	1.3e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379004408|ref|YP_005260080.1|	-	0.00017	21.8	0.1	0.057	13.8	0.0	3.0	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379004408|ref|YP_005260080.1|	-	0.0039	16.1	0.2	0.012	14.4	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
DUF1641	PF07849.6	gi|379004409|ref|YP_005260081.1|	-	5e-17	61.2	0.1	1.1e-16	60.1	0.1	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
HALZ	PF02183.13	gi|379004409|ref|YP_005260081.1|	-	0.00013	21.5	0.5	0.00023	20.8	0.3	1.4	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
DASH_Dad3	PF08656.5	gi|379004409|ref|YP_005260081.1|	-	0.13	12.0	0.1	6.7	6.4	0.1	2.2	2	0	0	2	2	2	0	DASH	complex	subunit	Dad3
Rhodanese	PF00581.15	gi|379004410|ref|YP_005260082.1|	-	1.8e-44	150.6	0.0	1.4e-23	83.4	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
TusA	PF01206.12	gi|379004411|ref|YP_005260083.1|	-	0.00075	19.0	0.0	0.001	18.6	0.0	1.2	1	0	0	1	1	1	1	Sulfurtransferase	TusA
EamA	PF00892.15	gi|379004412|ref|YP_005260084.1|	-	7.2e-28	97.1	29.4	2.6e-17	63.0	8.9	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
TPT	PF03151.11	gi|379004412|ref|YP_005260084.1|	-	0.0044	16.6	15.4	0.01	15.5	1.1	3.1	2	1	0	2	2	2	2	Triose-phosphate	Transporter	family
EmrE	PF13536.1	gi|379004412|ref|YP_005260084.1|	-	0.1	12.7	30.3	0.33	11.1	4.3	3.2	2	2	0	2	2	2	0	Multidrug	resistance	efflux	transporter
Acyl-CoA_dh_1	PF00441.19	gi|379004413|ref|YP_005260085.1|	-	4.1e-29	101.6	0.1	7.8e-29	100.7	0.1	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|379004413|ref|YP_005260085.1|	-	4e-11	43.3	0.0	9.3e-11	42.1	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379004413|ref|YP_005260085.1|	-	1.6e-09	37.1	0.2	4.2e-09	35.7	0.1	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
CoA_trans	PF01144.18	gi|379004414|ref|YP_005260086.1|	-	2.7e-42	144.4	0.5	3.9e-37	127.5	0.0	2.9	2	1	0	2	2	2	2	Coenzyme	A	transferase
Fer4	PF00037.22	gi|379004415|ref|YP_005260087.1|	-	9.3e-23	78.8	41.6	4.5e-07	29.1	2.0	5.3	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004415|ref|YP_005260087.1|	-	2.5e-18	66.2	38.5	4.3e-09	36.6	7.0	3.8	3	2	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004415|ref|YP_005260087.1|	-	2.5e-16	58.7	40.5	5.6e-05	22.8	2.8	5.6	5	0	0	5	5	5	4	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004415|ref|YP_005260087.1|	-	2.9e-15	56.2	34.3	9e-07	29.0	6.2	3.8	3	2	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004415|ref|YP_005260087.1|	-	3.6e-14	52.2	35.4	1e-07	31.6	6.6	4.2	3	2	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004415|ref|YP_005260087.1|	-	3.6e-14	53.2	25.9	0.0016	19.1	0.2	4.8	4	1	0	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379004415|ref|YP_005260087.1|	-	9.5e-14	51.0	35.4	6.9e-11	41.8	5.4	4.0	2	1	3	5	5	5	4	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379004415|ref|YP_005260087.1|	-	9.9e-12	44.7	34.5	1.4e-05	25.0	6.2	4.3	3	2	1	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004415|ref|YP_005260087.1|	-	1.1e-09	38.5	21.4	0.01	16.2	0.4	4.7	4	0	0	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004415|ref|YP_005260087.1|	-	4.4e-09	35.7	44.3	0.0035	17.1	2.8	5.6	6	0	0	6	6	5	4	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379004415|ref|YP_005260087.1|	-	5.6e-07	29.3	44.2	0.0098	16.1	2.4	5.8	6	0	0	6	6	6	4	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379004415|ref|YP_005260087.1|	-	8.5e-07	29.2	38.2	0.031	14.6	1.5	5.8	2	2	3	5	5	5	5	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379004415|ref|YP_005260087.1|	-	4e-06	27.2	29.8	0.012	16.1	0.8	5.7	4	1	1	5	5	5	3	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|379004415|ref|YP_005260087.1|	-	0.00058	20.2	6.6	0.00058	20.2	4.6	5.5	6	0	0	6	6	5	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379004415|ref|YP_005260087.1|	-	0.002	18.4	37.8	0.13	12.6	1.2	5.2	4	1	1	5	5	4	4	4Fe-4S	single	cluster	domain
DUF2321	PF10083.4	gi|379004415|ref|YP_005260087.1|	-	0.067	12.6	2.5	0.16	11.4	1.5	1.8	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
TusA	PF01206.12	gi|379004416|ref|YP_005260088.1|	-	0.039	13.5	0.0	0.047	13.2	0.0	1.0	1	0	0	1	1	1	0	Sulfurtransferase	TusA
DUF2757	PF10955.3	gi|379004416|ref|YP_005260088.1|	-	0.082	13.1	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2757)
TctB	PF07331.6	gi|379004417|ref|YP_005260089.1|	-	0.0018	17.9	3.4	0.0018	17.9	2.3	2.1	1	1	1	2	2	2	2	Tripartite	tricarboxylate	transporter	TctB	family
DUF360	PF04020.8	gi|379004417|ref|YP_005260089.1|	-	0.0086	16.4	11.9	0.0091	16.3	1.0	2.1	1	1	1	2	2	2	2	Membrane	protein	of	unknown	function
DUF2422	PF10337.4	gi|379004417|ref|YP_005260089.1|	-	0.026	13.3	0.2	0.035	12.9	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2422)
Yip1	PF04893.12	gi|379004417|ref|YP_005260089.1|	-	0.47	9.9	21.3	0.82	9.1	14.8	1.5	1	1	0	1	1	1	0	Yip1	domain
HTH_IclR	PF09339.5	gi|379004418|ref|YP_005260090.1|	-	0.00034	20.1	0.0	0.00064	19.2	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|379004418|ref|YP_005260090.1|	-	0.00069	19.3	0.1	0.0046	16.7	0.0	2.1	2	1	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|379004418|ref|YP_005260090.1|	-	0.0008	19.4	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
MarR_2	PF12802.2	gi|379004418|ref|YP_005260090.1|	-	0.0011	18.6	0.1	0.0017	17.9	0.1	1.4	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|379004418|ref|YP_005260090.1|	-	0.0013	18.4	0.0	0.0021	17.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|379004418|ref|YP_005260090.1|	-	0.012	15.3	0.0	0.018	14.8	0.0	1.2	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|379004418|ref|YP_005260090.1|	-	0.018	14.9	0.0	0.04	13.8	0.0	1.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.15	gi|379004418|ref|YP_005260090.1|	-	0.042	13.5	0.0	0.096	12.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_CodY	PF08222.6	gi|379004418|ref|YP_005260090.1|	-	0.042	13.1	0.0	0.061	12.6	0.0	1.2	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379004418|ref|YP_005260090.1|	-	0.085	12.2	0.0	0.17	11.2	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|379004418|ref|YP_005260090.1|	-	0.14	12.5	0.0	0.48	10.7	0.0	1.8	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
PaRep2b	PF07775.6	gi|379004422|ref|YP_005260094.1|	-	0.00039	18.7	0.1	0.00039	18.7	0.1	1.7	2	0	0	2	2	2	1	PaRep2b	protein
DUF4253	PF14062.1	gi|379004422|ref|YP_005260094.1|	-	0.081	12.5	0.0	1.3	8.7	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4253)
SPOR	PF05036.8	gi|379004422|ref|YP_005260094.1|	-	0.25	11.5	1.7	0.35	11.0	0.1	2.1	2	0	0	2	2	2	0	Sporulation	related	domain
CarboxypepD_reg	PF13620.1	gi|379004423|ref|YP_005260095.1|	-	0.015	15.3	0.0	0.15	12.1	0.0	2.5	2	1	0	2	2	2	0	Carboxypeptidase	regulatory-like	domain
CcmD	PF04995.9	gi|379004423|ref|YP_005260095.1|	-	0.15	11.8	4.2	0.33	10.7	2.9	1.6	1	0	0	1	1	1	0	Heme	exporter	protein	D	(CcmD)
ApoLp-III	PF07464.6	gi|379004425|ref|YP_005260097.1|	-	1e-07	32.0	5.1	1.5e-07	31.5	3.3	1.5	1	1	0	1	1	1	1	Apolipophorin-III	precursor	(apoLp-III)
MscS_porin	PF12795.2	gi|379004425|ref|YP_005260097.1|	-	3.2e-07	29.9	4.9	4.5e-07	29.4	3.4	1.2	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	porin	domain
HSBP1	PF06825.7	gi|379004425|ref|YP_005260097.1|	-	1e-06	28.2	23.9	0.096	12.2	1.3	5.9	1	1	4	5	5	5	4	Heat	shock	factor	binding	protein	1
NPV_P10	PF05531.7	gi|379004425|ref|YP_005260097.1|	-	1.8e-06	28.0	9.7	0.017	15.3	0.5	3.4	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
Apolipoprotein	PF01442.13	gi|379004425|ref|YP_005260097.1|	-	2.4e-06	27.2	14.1	0.00021	20.8	3.2	1.8	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
Baculo_PEP_C	PF04513.7	gi|379004425|ref|YP_005260097.1|	-	4.4e-06	26.5	7.6	0.0014	18.4	2.5	2.2	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
AAA_13	PF13166.1	gi|379004425|ref|YP_005260097.1|	-	4.4e-06	25.4	6.0	5e-06	25.2	4.2	1.1	1	0	0	1	1	1	1	AAA	domain
Mer2	PF09074.5	gi|379004425|ref|YP_005260097.1|	-	6.1e-06	26.2	6.3	7.5e-06	26.0	4.4	1.2	1	0	0	1	1	1	1	Mer2
Mnd1	PF03962.10	gi|379004425|ref|YP_005260097.1|	-	1.2e-05	25.0	5.9	1.5e-05	24.7	4.1	1.2	1	0	0	1	1	1	1	Mnd1	family
MtrG	PF04210.8	gi|379004425|ref|YP_005260097.1|	-	4.2e-05	23.1	13.6	0.31	10.7	0.2	4.8	1	1	4	5	5	5	1	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
Prominin	PF05478.6	gi|379004425|ref|YP_005260097.1|	-	7.3e-05	20.5	1.5	8.9e-05	20.2	1.0	1.3	1	0	0	1	1	1	1	Prominin
Snapin_Pallidin	PF14712.1	gi|379004425|ref|YP_005260097.1|	-	0.00014	22.1	9.4	0.016	15.5	2.6	2.5	1	1	2	3	3	3	2	Snapin/Pallidin
FliD_C	PF07195.7	gi|379004425|ref|YP_005260097.1|	-	0.00016	21.0	6.2	0.038	13.2	2.3	2.6	1	1	1	2	2	2	2	Flagellar	hook-associated	protein	2	C-terminus
MCPsignal	PF00015.16	gi|379004425|ref|YP_005260097.1|	-	0.00018	21.0	3.5	0.00043	19.9	2.0	1.8	1	1	1	2	2	2	1	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
IFT57	PF10498.4	gi|379004425|ref|YP_005260097.1|	-	0.00023	20.0	9.4	0.0028	16.4	0.5	2.0	1	1	1	2	2	2	2	Intra-flagellar	transport	protein	57
SF-assemblin	PF06705.6	gi|379004425|ref|YP_005260097.1|	-	0.00024	20.3	10.1	0.00033	19.8	7.0	1.4	1	0	0	1	1	1	1	SF-assemblin/beta	giardin
RmuC	PF02646.11	gi|379004425|ref|YP_005260097.1|	-	0.00026	19.9	6.5	0.021	13.6	0.8	2.2	1	1	1	2	2	2	2	RmuC	family
Laminin_II	PF06009.7	gi|379004425|ref|YP_005260097.1|	-	0.00039	20.1	7.5	0.24	11.1	2.1	2.9	1	1	2	3	3	3	2	Laminin	Domain	II
Syntaxin	PF00804.20	gi|379004425|ref|YP_005260097.1|	-	0.00043	20.3	10.0	0.0014	18.7	6.9	1.9	1	1	0	1	1	1	1	Syntaxin
Transposase_22	PF02994.9	gi|379004425|ref|YP_005260097.1|	-	0.00056	18.5	10.9	0.00069	18.2	7.5	1.1	1	0	0	1	1	1	1	L1	transposable	element
DUF948	PF06103.6	gi|379004425|ref|YP_005260097.1|	-	0.00057	19.6	5.8	0.075	12.9	1.7	2.9	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF3584	PF12128.3	gi|379004425|ref|YP_005260097.1|	-	0.00068	17.1	4.6	0.00082	16.8	3.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
DUF4407	PF14362.1	gi|379004425|ref|YP_005260097.1|	-	0.00094	18.2	1.6	0.0012	17.8	1.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4407)
SlyX	PF04102.7	gi|379004425|ref|YP_005260097.1|	-	0.0013	19.0	10.5	4.8	7.6	0.1	4.1	1	1	1	2	2	2	0	SlyX
Prefoldin_2	PF01920.15	gi|379004425|ref|YP_005260097.1|	-	0.0016	18.1	7.9	2.1	8.1	0.1	3.7	1	1	1	2	2	2	0	Prefoldin	subunit
Occludin_ELL	PF07303.8	gi|379004425|ref|YP_005260097.1|	-	0.0021	18.7	4.7	2.7	8.7	3.2	3.0	1	1	0	1	1	1	0	Occludin	homology	domain
Mt_ATP-synt_D	PF05873.7	gi|379004425|ref|YP_005260097.1|	-	0.0022	17.6	2.2	0.13	11.8	0.5	2.1	1	1	1	2	2	2	1	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
BLOC1_2	PF10046.4	gi|379004425|ref|YP_005260097.1|	-	0.0022	18.0	8.9	0.27	11.3	1.1	2.9	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DHC_N1	PF08385.7	gi|379004425|ref|YP_005260097.1|	-	0.0022	16.4	3.9	0.0027	16.1	2.7	1.1	1	0	0	1	1	1	1	Dynein	heavy	chain,	N-terminal	region	1
DUF1664	PF07889.7	gi|379004425|ref|YP_005260097.1|	-	0.0023	17.7	13.5	0.18	11.6	1.3	3.3	1	1	2	3	3	3	1	Protein	of	unknown	function	(DUF1664)
Filament	PF00038.16	gi|379004425|ref|YP_005260097.1|	-	0.0023	17.4	5.2	0.0023	17.4	3.6	1.6	1	1	0	1	1	1	1	Intermediate	filament	protein
AAA_27	PF13514.1	gi|379004425|ref|YP_005260097.1|	-	0.0025	15.6	7.6	0.003	15.3	5.3	1.1	1	0	0	1	1	1	1	AAA	domain
Cortex-I_coil	PF09304.5	gi|379004425|ref|YP_005260097.1|	-	0.0027	17.7	15.1	0.0042	17.1	2.4	2.5	1	1	1	2	2	2	1	Cortexillin	I,	coiled	coil
ISG65-75	PF11727.3	gi|379004425|ref|YP_005260097.1|	-	0.0028	16.7	3.7	0.0044	16.1	2.6	1.4	1	0	0	1	1	1	1	Invariant	surface	glycoprotein
DUF4455	PF14643.1	gi|379004425|ref|YP_005260097.1|	-	0.0029	16.3	4.7	0.0048	15.5	3.1	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4455)
Nup54	PF13874.1	gi|379004425|ref|YP_005260097.1|	-	0.0034	17.0	7.9	0.033	13.8	3.0	2.6	1	1	1	2	2	2	1	Nucleoporin	complex	subunit	54
DUF3450	PF11932.3	gi|379004425|ref|YP_005260097.1|	-	0.0039	16.4	7.6	0.015	14.6	1.8	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3450)
Atg14	PF10186.4	gi|379004425|ref|YP_005260097.1|	-	0.0043	16.0	10.0	0.011	14.7	5.3	2.0	1	1	1	2	2	2	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
DUF342	PF03961.8	gi|379004425|ref|YP_005260097.1|	-	0.0052	15.2	6.6	0.0073	14.7	4.5	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
Laminin_I	PF06008.9	gi|379004425|ref|YP_005260097.1|	-	0.0054	16.0	8.3	0.17	11.1	2.5	2.2	1	1	0	2	2	2	1	Laminin	Domain	I
Seryl_tRNA_N	PF02403.17	gi|379004425|ref|YP_005260097.1|	-	0.0054	16.7	12.5	0.014	15.3	4.4	2.3	1	1	1	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
Vps5	PF09325.5	gi|379004425|ref|YP_005260097.1|	-	0.0055	15.9	4.5	0.0074	15.5	3.1	1.2	1	0	0	1	1	1	1	Vps5	C	terminal	like
DUF2317	PF10079.4	gi|379004425|ref|YP_005260097.1|	-	0.0055	15.3	5.2	0.0063	15.1	3.6	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
Tropomyosin	PF00261.15	gi|379004425|ref|YP_005260097.1|	-	0.0067	15.5	14.6	0.047	12.7	2.5	2.1	1	1	1	2	2	2	1	Tropomyosin
HR1	PF02185.11	gi|379004425|ref|YP_005260097.1|	-	0.0071	16.0	10.1	0.34	10.6	1.3	4.0	1	1	3	4	4	4	2	Hr1	repeat
Tho2	PF11262.3	gi|379004425|ref|YP_005260097.1|	-	0.0075	15.3	3.2	0.011	14.7	2.0	1.4	1	1	0	1	1	1	1	Transcription	factor/nuclear	export	subunit	protein	2
Snf7	PF03357.16	gi|379004425|ref|YP_005260097.1|	-	0.0076	15.6	9.8	0.031	13.6	4.2	2.2	1	1	1	2	2	2	1	Snf7
Reo_sigmaC	PF04582.7	gi|379004425|ref|YP_005260097.1|	-	0.0078	15.4	2.6	0.027	13.6	0.6	1.9	1	1	1	2	2	2	1	Reovirus	sigma	C	capsid	protein
DUF2884	PF11101.3	gi|379004425|ref|YP_005260097.1|	-	0.0079	15.5	2.4	0.074	12.4	1.6	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF2884)
DUF148	PF02520.12	gi|379004425|ref|YP_005260097.1|	-	0.0083	15.9	4.4	0.21	11.3	0.7	2.4	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF148
HalX	PF08663.5	gi|379004425|ref|YP_005260097.1|	-	0.0084	16.0	9.8	4.6	7.2	0.6	4.3	1	1	2	3	3	3	0	HalX	domain
NYD-SP28	PF14772.1	gi|379004425|ref|YP_005260097.1|	-	0.0086	16.1	10.3	0.025	14.6	1.5	2.5	1	1	2	3	3	3	1	Sperm	tail
COG5	PF10392.4	gi|379004425|ref|YP_005260097.1|	-	0.0087	16.0	4.0	0.015	15.2	2.5	1.7	1	1	0	1	1	1	1	Golgi	transport	complex	subunit	5
Phage_GPO	PF05929.6	gi|379004425|ref|YP_005260097.1|	-	0.0088	15.3	3.1	0.011	15.0	2.1	1.3	1	0	0	1	1	1	1	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
APG17	PF04108.7	gi|379004425|ref|YP_005260097.1|	-	0.009	14.8	5.9	0.023	13.5	2.1	2.0	1	1	1	2	2	2	2	Autophagy	protein	Apg17
DUF2333	PF10095.4	gi|379004425|ref|YP_005260097.1|	-	0.0093	14.6	1.6	0.013	14.1	1.1	1.3	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2333)
DUF848	PF05852.6	gi|379004425|ref|YP_005260097.1|	-	0.0098	15.7	7.3	0.016	15.0	4.2	1.8	1	1	1	2	2	2	1	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
TMF_DNA_bd	PF12329.3	gi|379004425|ref|YP_005260097.1|	-	0.0099	15.6	9.8	2.1	8.2	2.8	3.5	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin	PF02996.12	gi|379004425|ref|YP_005260097.1|	-	0.011	15.4	8.8	0.94	9.1	0.1	3.3	1	1	2	3	3	3	0	Prefoldin	subunit
GldM_N	PF12081.3	gi|379004425|ref|YP_005260097.1|	-	0.011	15.2	1.9	0.029	13.9	1.1	1.8	1	1	0	1	1	1	0	GldM	N-terminal	domain
Flagellin_C	PF00700.16	gi|379004425|ref|YP_005260097.1|	-	0.012	15.7	4.2	0.48	10.6	0.1	3.1	1	1	1	2	2	2	0	Bacterial	flagellin	C-terminal	helical	region
V-SNARE_C	PF12352.3	gi|379004425|ref|YP_005260097.1|	-	0.012	15.6	3.9	3.1	7.9	0.0	4.2	2	2	1	4	4	4	0	Snare	region	anchored	in	the	vesicle	membrane	C-terminus
IncA	PF04156.9	gi|379004425|ref|YP_005260097.1|	-	0.013	15.1	8.7	0.17	11.4	5.9	2.3	1	1	0	1	1	1	0	IncA	protein
V_ATPase_I	PF01496.14	gi|379004425|ref|YP_005260097.1|	-	0.013	13.3	6.8	0.16	9.7	1.4	1.7	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF869	PF05911.6	gi|379004425|ref|YP_005260097.1|	-	0.013	13.7	6.6	0.062	11.5	4.2	1.9	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
Spectrin	PF00435.16	gi|379004425|ref|YP_005260097.1|	-	0.013	15.7	6.2	0.066	13.5	1.1	3.0	1	1	2	3	3	3	0	Spectrin	repeat
Matrilin_ccoil	PF10393.4	gi|379004425|ref|YP_005260097.1|	-	0.013	14.8	6.0	5.8	6.3	0.0	4.7	1	1	4	5	5	5	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
DUF3829	PF12889.2	gi|379004425|ref|YP_005260097.1|	-	0.014	14.6	4.0	0.033	13.3	2.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3829)
Tropomyosin_1	PF12718.2	gi|379004425|ref|YP_005260097.1|	-	0.014	15.2	8.2	0.026	14.3	5.7	1.5	1	1	0	1	1	1	0	Tropomyosin	like
MIS13	PF08202.6	gi|379004425|ref|YP_005260097.1|	-	0.014	14.4	3.5	0.029	13.4	2.4	1.5	1	1	0	1	1	1	0	Mis12-Mtw1	protein	family
DivIC	PF04977.10	gi|379004425|ref|YP_005260097.1|	-	0.015	14.8	10.0	0.11	11.9	0.2	2.9	1	1	1	2	2	2	0	Septum	formation	initiator
PilJ	PF13675.1	gi|379004425|ref|YP_005260097.1|	-	0.015	15.6	2.7	1.1	9.5	0.4	2.3	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
CALCOCO1	PF07888.6	gi|379004425|ref|YP_005260097.1|	-	0.015	13.6	10.2	0.018	13.3	7.1	1.1	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Lipoprotein_7	PF01540.11	gi|379004425|ref|YP_005260097.1|	-	0.015	14.3	9.6	0.099	11.6	3.4	2.0	1	1	1	2	2	2	0	Adhesin	lipoprotein
YjcZ	PF13990.1	gi|379004425|ref|YP_005260097.1|	-	0.015	14.4	2.6	0.17	10.9	0.3	2.1	1	1	1	2	2	2	0	YjcZ-like	protein
TBPIP	PF07106.8	gi|379004425|ref|YP_005260097.1|	-	0.016	14.7	8.2	0.013	15.0	4.5	1.8	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Med9	PF07544.8	gi|379004425|ref|YP_005260097.1|	-	0.016	14.9	9.2	0.36	10.5	2.8	2.5	1	1	1	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
HSCB_C	PF07743.8	gi|379004425|ref|YP_005260097.1|	-	0.017	15.5	13.2	7	7.1	1.5	3.5	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
AAA_32	PF13654.1	gi|379004425|ref|YP_005260097.1|	-	0.019	13.6	6.7	0.0091	14.7	2.1	1.8	1	1	1	2	2	2	0	AAA	domain
LXG	PF04740.7	gi|379004425|ref|YP_005260097.1|	-	0.019	14.7	6.1	0.028	14.2	4.2	1.2	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily
APG6	PF04111.7	gi|379004425|ref|YP_005260097.1|	-	0.019	14.0	5.5	0.032	13.2	3.6	1.4	1	1	0	1	1	1	0	Autophagy	protein	Apg6
CAP_N	PF01213.14	gi|379004425|ref|YP_005260097.1|	-	0.021	14.1	0.5	0.034	13.4	0.3	1.4	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
Phasin	PF05597.6	gi|379004425|ref|YP_005260097.1|	-	0.021	14.5	5.4	0.11	12.2	3.7	2.2	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
OmpH	PF03938.9	gi|379004425|ref|YP_005260097.1|	-	0.022	14.7	6.0	0.061	13.2	4.2	2.0	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
HAUS-augmin3	PF14932.1	gi|379004425|ref|YP_005260097.1|	-	0.022	13.9	5.0	0.032	13.4	3.5	1.3	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Transcrip_act	PF04949.8	gi|379004425|ref|YP_005260097.1|	-	0.023	14.3	11.8	0.16	11.5	6.2	2.1	1	1	1	2	2	2	0	Transcriptional	activator
HAP1_N	PF04849.8	gi|379004425|ref|YP_005260097.1|	-	0.026	13.4	9.5	0.056	12.3	6.6	1.6	1	1	0	1	1	1	0	HAP1	N-terminal	conserved	region
TMF_TATA_bd	PF12325.3	gi|379004425|ref|YP_005260097.1|	-	0.027	14.2	12.2	0.06	13.0	4.5	2.4	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DASH_Duo1	PF08651.5	gi|379004425|ref|YP_005260097.1|	-	0.031	13.8	5.3	0.15	11.6	0.2	3.0	1	1	2	3	3	3	0	DASH	complex	subunit	Duo1
KxDL	PF10241.4	gi|379004425|ref|YP_005260097.1|	-	0.031	14.1	8.3	1.7	8.6	0.9	3.1	1	1	2	3	3	3	0	Uncharacterized	conserved	protein
AATF-Che1	PF13339.1	gi|379004425|ref|YP_005260097.1|	-	0.032	14.3	4.9	0.38	10.9	1.1	2.4	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
Exonuc_VII_L	PF02601.10	gi|379004425|ref|YP_005260097.1|	-	0.035	13.3	3.2	0.044	12.9	2.2	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
Fmp27_WPPW	PF10359.4	gi|379004425|ref|YP_005260097.1|	-	0.036	12.4	3.9	0.046	12.1	2.7	1.4	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
CDC37_N	PF03234.9	gi|379004425|ref|YP_005260097.1|	-	0.037	14.3	6.1	0.046	14.0	4.2	1.2	1	0	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
CR6_interact	PF10147.4	gi|379004425|ref|YP_005260097.1|	-	0.037	13.3	5.2	0.055	12.7	3.6	1.4	1	0	0	1	1	1	0	Growth	arrest	and	DNA-damage-inducible	proteins-interacting	protein	1
MitMem_reg	PF13012.1	gi|379004425|ref|YP_005260097.1|	-	0.04	14.0	2.5	0.17	12.0	0.4	2.6	1	1	2	3	3	2	0	Maintenance	of	mitochondrial	structure	and	function
DUF4527	PF15030.1	gi|379004425|ref|YP_005260097.1|	-	0.043	13.1	2.0	0.044	13.0	0.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4527)
Tht1	PF04163.7	gi|379004425|ref|YP_005260097.1|	-	0.047	12.0	8.1	0.055	11.8	5.6	1.1	1	0	0	1	1	1	0	Tht1-like	nuclear	fusion	protein
KMP11	PF03037.11	gi|379004425|ref|YP_005260097.1|	-	0.049	14.2	3.6	0.41	11.2	1.2	3.2	1	1	1	2	2	2	0	Kinetoplastid	membrane	protein	11
DUF812	PF05667.6	gi|379004425|ref|YP_005260097.1|	-	0.05	12.1	11.0	0.54	8.6	4.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF812)
Z1	PF10593.4	gi|379004425|ref|YP_005260097.1|	-	0.05	12.8	1.1	0.062	12.5	0.7	1.3	1	0	0	1	1	1	0	Z1	domain
IFT46_B_C	PF12317.3	gi|379004425|ref|YP_005260097.1|	-	0.052	12.9	1.7	0.072	12.4	1.2	1.3	1	0	0	1	1	1	0	Intraflagellar	transport	complex	B	protein	46	C	terminal
Syntaxin_2	PF14523.1	gi|379004425|ref|YP_005260097.1|	-	0.053	13.5	8.2	0.57	10.2	5.7	2.4	1	1	0	1	1	1	0	Syntaxin-like	protein
Flagellin_N	PF00669.15	gi|379004425|ref|YP_005260097.1|	-	0.058	13.1	4.1	0.061	13.1	1.3	1.8	1	1	1	2	2	1	0	Bacterial	flagellin	N-terminal	helical	region
Sec5	PF15469.1	gi|379004425|ref|YP_005260097.1|	-	0.058	13.1	6.7	0.84	9.3	2.1	2.5	1	1	2	3	3	3	0	Exocyst	complex	component	Sec5
Vip3A_N	PF12495.3	gi|379004425|ref|YP_005260097.1|	-	0.06	13.0	4.7	0.18	11.4	3.3	2.0	1	1	0	1	1	1	0	Vegetative	insecticide	protein	3A	N	terminal
DUF885	PF05960.6	gi|379004425|ref|YP_005260097.1|	-	0.06	12.5	2.1	0.069	12.3	1.5	1.0	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
DUF2730	PF10805.3	gi|379004425|ref|YP_005260097.1|	-	0.063	13.0	3.8	0.28	10.9	1.7	2.5	1	1	1	2	2	1	0	Protein	of	unknown	function	(DUF2730)
Hemagglutinin	PF00509.13	gi|379004425|ref|YP_005260097.1|	-	0.066	11.3	12.3	1.2	7.1	0.3	2.4	1	1	1	2	2	2	0	Haemagglutinin
Lipoprotein_6	PF01441.14	gi|379004425|ref|YP_005260097.1|	-	0.066	13.0	5.4	0.3	10.9	3.0	2.1	1	1	1	2	2	2	0	Lipoprotein
PqqD	PF05402.7	gi|379004425|ref|YP_005260097.1|	-	0.071	13.1	1.5	0.76	9.8	1.0	2.6	1	1	0	1	1	1	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
FUSC	PF04632.7	gi|379004425|ref|YP_005260097.1|	-	0.075	11.4	1.0	0.085	11.2	0.7	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Allexi_40kDa	PF05549.6	gi|379004425|ref|YP_005260097.1|	-	0.078	12.2	3.7	0.16	11.1	2.4	1.7	1	1	1	2	2	2	0	Allexivirus	40kDa	protein
Fib_alpha	PF08702.5	gi|379004425|ref|YP_005260097.1|	-	0.08	13.0	9.3	0.65	10.1	6.5	2.0	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
DUF2203	PF09969.4	gi|379004425|ref|YP_005260097.1|	-	0.086	13.0	5.0	2.9	8.1	3.4	2.3	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
FlxA	PF14282.1	gi|379004425|ref|YP_005260097.1|	-	0.088	12.7	2.8	0.66	9.9	0.8	2.6	1	1	1	2	2	2	0	FlxA-like	protein
YlqD	PF11068.3	gi|379004425|ref|YP_005260097.1|	-	0.093	12.7	5.3	0.18	11.8	1.5	2.1	1	1	1	2	2	2	0	YlqD	protein
CHD5	PF04420.9	gi|379004425|ref|YP_005260097.1|	-	0.095	12.3	6.4	1.9	8.1	0.1	3.1	1	1	2	3	3	3	0	CHD5-like	protein
Filo_VP35	PF02097.10	gi|379004425|ref|YP_005260097.1|	-	0.099	11.8	1.6	0.13	11.4	1.1	1.2	1	0	0	1	1	1	0	Filoviridae	VP35
Mit_KHE1	PF10173.4	gi|379004425|ref|YP_005260097.1|	-	0.11	12.3	0.3	0.17	11.7	0.2	1.3	1	1	0	1	1	1	0	Mitochondrial	K+-H+	exchange-related
Prefoldin_3	PF13758.1	gi|379004425|ref|YP_005260097.1|	-	0.11	12.2	16.7	8.4	6.2	2.4	4.8	2	1	2	4	4	4	0	Prefoldin	subunit
Ax_dynein_light	PF10211.4	gi|379004425|ref|YP_005260097.1|	-	0.13	12.1	7.8	0.15	11.8	1.1	2.2	1	1	1	2	2	2	0	Axonemal	dynein	light	chain
Sec3_C	PF09763.4	gi|379004425|ref|YP_005260097.1|	-	0.13	10.3	7.7	0.59	8.2	0.1	2.2	1	1	1	2	2	2	0	Exocyst	complex	component	Sec3
KH_5	PF13184.1	gi|379004425|ref|YP_005260097.1|	-	0.14	12.0	7.4	10	5.9	0.5	3.8	1	1	2	3	3	3	0	NusA-like	KH	domain
MRP-L51	PF10244.4	gi|379004425|ref|YP_005260097.1|	-	0.14	12.2	2.0	19	5.3	0.1	2.8	2	1	1	3	3	3	0	Mitochondrial	ribosomal	subunit
MRF_C1	PF13887.1	gi|379004425|ref|YP_005260097.1|	-	0.14	11.1	15.6	6	5.9	0.4	5.9	2	1	2	5	5	5	0	Myelin	gene	regulatory	factor	-C-terminal	domain	1
Phage_Mu_Gam	PF07352.7	gi|379004425|ref|YP_005260097.1|	-	0.15	11.6	7.7	3.4	7.1	1.9	2.5	1	1	2	3	3	3	0	Bacteriophage	Mu	Gam	like	protein
LUC7	PF03194.10	gi|379004425|ref|YP_005260097.1|	-	0.15	11.5	9.3	0.54	9.7	6.4	2.0	1	1	0	1	1	1	0	LUC7	N_terminus
UPF0184	PF03670.8	gi|379004425|ref|YP_005260097.1|	-	0.16	12.1	9.0	0.2	11.8	0.4	2.7	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0184)
RPW8	PF05659.6	gi|379004425|ref|YP_005260097.1|	-	0.17	11.3	8.3	2.5	7.6	3.4	3.1	1	1	1	2	2	2	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Spc7	PF08317.6	gi|379004425|ref|YP_005260097.1|	-	0.17	10.4	10.4	0.32	9.6	7.2	1.5	1	1	0	1	1	1	0	Spc7	kinetochore	protein
MxiH	PF09392.5	gi|379004425|ref|YP_005260097.1|	-	0.18	12.3	0.6	19	5.9	0.1	3.1	2	1	0	2	2	2	0	Type	III	secretion	needle	MxiH	like
Fzo_mitofusin	PF04799.8	gi|379004425|ref|YP_005260097.1|	-	0.18	11.1	7.4	0.12	11.7	1.0	2.6	1	1	2	3	3	3	0	fzo-like	conserved	region
DUF3135	PF11333.3	gi|379004425|ref|YP_005260097.1|	-	0.18	11.9	2.2	3.2	7.9	0.2	3.0	1	1	1	3	3	2	0	Protein	of	unknown	function	(DUF3135)
TPR_MLP1_2	PF07926.7	gi|379004425|ref|YP_005260097.1|	-	0.19	11.4	6.1	2.2	8.0	3.9	2.4	1	1	0	1	1	1	0	TPR/MLP1/MLP2-like	protein
MutS_IV	PF05190.13	gi|379004425|ref|YP_005260097.1|	-	0.2	11.8	6.6	19	5.5	0.3	3.6	1	1	2	3	3	3	0	MutS	family	domain	IV
DUF16	PF01519.11	gi|379004425|ref|YP_005260097.1|	-	0.21	11.8	8.7	3.8	7.7	1.7	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF16
Pox_F11	PF04943.7	gi|379004425|ref|YP_005260097.1|	-	0.21	10.4	6.5	0.81	8.4	2.7	1.9	1	1	0	1	1	1	0	Poxvirus	F11	protein
Histidinol_dh	PF00815.15	gi|379004425|ref|YP_005260097.1|	-	0.22	10.1	2.4	0.32	9.5	1.7	1.2	1	0	0	1	1	1	0	Histidinol	dehydrogenase
DUF1993	PF09351.5	gi|379004425|ref|YP_005260097.1|	-	0.22	11.4	2.4	3.8	7.4	0.7	2.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1993)
Cnl2_NKP2	PF09447.5	gi|379004425|ref|YP_005260097.1|	-	0.22	11.1	6.0	1.1	8.9	0.1	3.4	2	1	0	2	2	2	0	Cnl2/NKP2	family	protein
DUF1515	PF07439.6	gi|379004425|ref|YP_005260097.1|	-	0.22	11.3	9.0	2.8	7.7	1.0	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1515)
PMC2NT	PF08066.7	gi|379004425|ref|YP_005260097.1|	-	0.24	11.7	6.7	0.28	11.5	2.4	2.5	1	1	1	2	2	2	0	PMC2NT	(NUC016)	domain
ACCA	PF03255.9	gi|379004425|ref|YP_005260097.1|	-	0.25	10.8	5.4	2.4	7.7	0.8	2.4	1	1	1	2	2	2	0	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
DUF4041	PF13250.1	gi|379004425|ref|YP_005260097.1|	-	0.25	10.9	7.6	6.2	6.4	1.2	4.3	1	1	4	5	5	5	0	Domain	of	unknown	function	(DUF4041)
V-SNARE	PF05008.10	gi|379004425|ref|YP_005260097.1|	-	0.28	11.3	8.4	0.91	9.7	2.0	2.5	1	1	1	2	2	2	0	Vesicle	transport	v-SNARE	protein	N-terminus
TMPIT	PF07851.8	gi|379004425|ref|YP_005260097.1|	-	0.3	10.0	3.8	0.88	8.5	2.7	1.8	1	1	0	1	1	1	0	TMPIT-like	protein
DUF972	PF06156.8	gi|379004425|ref|YP_005260097.1|	-	0.31	11.3	6.1	7.1	7.0	4.2	2.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
Uds1	PF15456.1	gi|379004425|ref|YP_005260097.1|	-	0.32	11.0	9.3	5.2	7.0	0.1	3.1	1	1	1	2	2	2	0	Up-regulated	During	Septation
TMCO5	PF14992.1	gi|379004425|ref|YP_005260097.1|	-	0.34	9.9	12.9	0.11	11.6	4.2	2.2	1	1	2	3	3	3	0	TMCO5	family
DUF2935	PF11155.3	gi|379004425|ref|YP_005260097.1|	-	0.35	10.9	2.6	2	8.4	1.8	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF2935)
TrbM	PF07424.6	gi|379004425|ref|YP_005260097.1|	-	0.36	10.8	1.8	0.95	9.4	0.6	1.9	1	1	1	2	2	2	0	TrbM
FemAB	PF02388.11	gi|379004425|ref|YP_005260097.1|	-	0.37	9.4	4.5	1.6	7.3	3.1	1.9	1	1	0	1	1	1	0	FemAB	family
DUF4140	PF13600.1	gi|379004425|ref|YP_005260097.1|	-	0.38	11.2	9.4	1.2	9.5	0.3	2.9	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Tweety	PF04906.8	gi|379004425|ref|YP_005260097.1|	-	0.38	9.1	3.2	0.89	7.8	1.7	1.8	1	1	1	2	2	2	0	Tweety
DivIVA	PF05103.8	gi|379004425|ref|YP_005260097.1|	-	0.39	10.7	9.2	0.97	9.4	3.8	2.6	1	1	1	2	2	2	0	DivIVA	protein
LMBR1	PF04791.11	gi|379004425|ref|YP_005260097.1|	-	0.39	9.2	1.3	0.52	8.8	0.9	1.3	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Peripla_BP_2	PF01497.13	gi|379004425|ref|YP_005260097.1|	-	0.41	9.7	6.9	5	6.1	1.1	2.6	1	1	1	2	2	2	0	Periplasmic	binding	protein
GP41	PF00517.12	gi|379004425|ref|YP_005260097.1|	-	0.42	10.1	5.6	3.7	7.0	1.9	2.7	1	1	1	2	2	2	0	Retroviral	envelope	protein
Hemerythrin	PF01814.18	gi|379004425|ref|YP_005260097.1|	-	0.42	10.7	5.6	1.2	9.3	1.6	2.4	1	1	1	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
CorA	PF01544.13	gi|379004425|ref|YP_005260097.1|	-	0.45	9.5	14.8	0.25	10.3	5.3	2.1	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
ING	PF12998.2	gi|379004425|ref|YP_005260097.1|	-	0.49	10.6	8.5	2.1	8.6	1.7	2.4	1	1	1	2	2	2	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
TACC	PF05010.9	gi|379004425|ref|YP_005260097.1|	-	0.51	10.0	7.8	4.1	7.1	5.4	2.2	1	1	0	1	1	1	0	Transforming	acidic	coiled-coil-containing	protein	(TACC)
SNARE	PF05739.14	gi|379004425|ref|YP_005260097.1|	-	0.51	10.0	16.3	7.4	6.3	0.1	4.4	1	1	1	3	3	3	0	SNARE	domain
Gp-FAR-1	PF05823.7	gi|379004425|ref|YP_005260097.1|	-	0.53	10.2	5.6	1.4	8.8	0.5	2.6	1	1	2	3	3	3	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
COG2	PF06148.6	gi|379004425|ref|YP_005260097.1|	-	0.55	10.1	9.4	1.6	8.5	1.3	3.0	1	1	2	3	3	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Syntaxin-6_N	PF09177.6	gi|379004425|ref|YP_005260097.1|	-	0.55	10.6	8.5	9.1	6.7	5.5	2.6	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
WASH_WAHD	PF11945.3	gi|379004425|ref|YP_005260097.1|	-	0.59	9.3	4.9	0.24	10.6	0.3	2.1	1	1	1	2	2	2	0	WAHD	domain	of	WASH	complex
ORF6C	PF10552.4	gi|379004425|ref|YP_005260097.1|	-	0.65	9.7	6.0	6.7	6.4	1.0	3.4	1	1	1	2	2	2	0	ORF6C	domain
Adenylsucc_synt	PF00709.16	gi|379004425|ref|YP_005260097.1|	-	0.65	8.5	6.6	0.63	8.6	1.2	2.0	1	1	1	2	2	2	0	Adenylosuccinate	synthetase
Sec2p	PF06428.6	gi|379004425|ref|YP_005260097.1|	-	0.8	9.5	8.9	24	4.8	4.2	2.9	1	1	1	2	2	2	0	GDP/GTP	exchange	factor	Sec2p
Kinetocho_Slk19	PF12709.2	gi|379004425|ref|YP_005260097.1|	-	0.88	9.6	5.2	11	6.1	0.8	3.6	1	1	2	3	3	2	0	Central	kinetochore-associated
RHH_1	PF01402.16	gi|379004425|ref|YP_005260097.1|	-	0.89	9.5	8.4	12	6.0	0.1	4.5	4	2	0	4	4	2	0	Ribbon-helix-helix	protein,	copG	family
CCDC-167	PF15188.1	gi|379004425|ref|YP_005260097.1|	-	0.99	9.3	8.8	1.8	8.5	4.8	2.3	1	1	1	2	2	2	0	Coiled-coil	domain-containing	protein	167
Peptidase_M75	PF09375.5	gi|379004425|ref|YP_005260097.1|	-	1.1	8.5	4.5	3.2	6.9	1.9	2.2	1	1	1	2	2	2	0	Imelysin
DUF1640	PF07798.6	gi|379004425|ref|YP_005260097.1|	-	1.1	9.2	12.5	0.93	9.5	7.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF883	PF05957.8	gi|379004425|ref|YP_005260097.1|	-	1.2	9.5	6.3	1.5	9.2	2.0	2.4	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
DUF607	PF04678.8	gi|379004425|ref|YP_005260097.1|	-	1.3	8.8	4.7	15	5.4	3.3	2.5	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF607
FlgN	PF05130.7	gi|379004425|ref|YP_005260097.1|	-	1.9	8.7	9.5	7.7	6.7	6.3	2.1	1	1	1	2	2	2	0	FlgN	protein
DUF3772	PF12607.3	gi|379004425|ref|YP_005260097.1|	-	1.9	8.1	4.7	6.3	6.5	0.5	3.3	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF3772)
MIF4G_like_2	PF09090.6	gi|379004425|ref|YP_005260097.1|	-	2	7.5	8.3	3.7	6.6	5.7	1.6	1	1	0	1	1	1	0	MIF4G	like
SPX	PF03105.14	gi|379004425|ref|YP_005260097.1|	-	2.2	7.9	5.8	19	4.9	3.9	1.9	1	1	0	1	1	1	0	SPX	domain
Rad50_zn_hook	PF04423.9	gi|379004425|ref|YP_005260097.1|	-	2.3	7.7	4.8	20	4.7	0.6	3.7	3	2	0	3	3	1	0	Rad50	zinc	hook	motif
Rootletin	PF15035.1	gi|379004425|ref|YP_005260097.1|	-	2.4	8.1	11.5	14	5.5	8.0	2.0	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
SecA_DEAD	PF07517.9	gi|379004425|ref|YP_005260097.1|	-	2.8	7.1	7.5	2.1	7.5	3.1	1.9	1	1	1	2	2	2	0	SecA	DEAD-like	domain
DUF3373	PF11853.3	gi|379004425|ref|YP_005260097.1|	-	2.9	6.3	5.1	16	3.9	3.5	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
DUF1492	PF07374.6	gi|379004425|ref|YP_005260097.1|	-	3	8.0	9.1	5.2	7.2	0.9	2.6	1	1	2	3	3	2	0	Protein	of	unknown	function	(DUF1492)
XhlA	PF10779.4	gi|379004425|ref|YP_005260097.1|	-	3.6	7.5	18.2	2.8	7.9	6.7	3.2	1	1	1	2	2	2	0	Haemolysin	XhlA
PRKCSH-like	PF12999.2	gi|379004425|ref|YP_005260097.1|	-	3.9	7.0	5.9	9.2	5.8	1.5	2.2	1	1	1	2	2	2	0	Glucosidase	II	beta	subunit-like
YtxH	PF12732.2	gi|379004425|ref|YP_005260097.1|	-	4.2	7.8	4.9	1.3e+02	3.0	3.4	2.6	1	1	0	1	1	1	0	YtxH-like	protein
Val_tRNA-synt_C	PF10458.4	gi|379004425|ref|YP_005260097.1|	-	4.5	7.4	7.6	20	5.3	0.7	3.7	2	2	2	4	4	3	0	Valyl	tRNA	synthetase	tRNA	binding	arm
MutS_III	PF05192.13	gi|379004425|ref|YP_005260097.1|	-	4.5	6.9	9.4	8	6.1	6.5	1.5	1	1	0	1	1	1	0	MutS	domain	III
FlaC_arch	PF05377.6	gi|379004425|ref|YP_005260097.1|	-	9.1	6.2	7.9	8.6	6.3	1.0	3.1	1	1	1	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
PaREP1	PF05942.6	gi|379004426|ref|YP_005260098.1|	-	2.5e-30	104.7	10.9	3.7e-30	104.1	7.6	1.3	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
DUF4398	PF14346.1	gi|379004426|ref|YP_005260098.1|	-	0.22	11.5	6.1	0.45	10.6	4.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
HEPN	PF05168.9	gi|379004426|ref|YP_005260098.1|	-	0.61	9.9	6.2	5.8	6.8	4.3	2.4	1	1	0	1	1	1	0	HEPN	domain
PaREP1	PF05942.6	gi|379004427|ref|YP_005260099.1|	-	5.9e-34	116.3	2.8	7.3e-34	116.0	1.9	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004427|ref|YP_005260099.1|	-	0.017	15.0	1.9	1.1	9.1	1.3	2.2	1	1	0	1	1	1	0	HEPN	domain
PqqD	PF05402.7	gi|379004427|ref|YP_005260099.1|	-	0.069	13.1	0.1	1.7	8.6	0.1	2.4	2	0	0	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
NTPase_I-T	PF01931.13	gi|379004428|ref|YP_005260100.1|	-	1.5e-36	125.6	0.0	1.7e-36	125.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
Methyltransf_11	PF08241.7	gi|379004429|ref|YP_005260101.1|	-	3.3e-06	27.4	0.0	5.4e-06	26.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
KaiC	PF06745.8	gi|379004432|ref|YP_005260104.1|	-	2.9e-11	42.9	0.0	9e-07	28.2	0.0	3.6	2	1	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|379004432|ref|YP_005260104.1|	-	1.3e-05	24.6	0.7	0.009	15.4	0.1	2.8	2	1	0	2	2	2	2	AAA	domain
GvpD	PF07088.6	gi|379004432|ref|YP_005260104.1|	-	0.00021	19.7	0.1	0.62	8.3	0.0	3.1	2	1	1	3	3	3	2	GvpD	gas	vesicle	protein
RecA	PF00154.16	gi|379004432|ref|YP_005260104.1|	-	0.00046	19.3	0.0	0.15	11.1	0.0	2.2	2	0	0	2	2	2	2	recA	bacterial	DNA	recombination	protein
AAA_22	PF13401.1	gi|379004432|ref|YP_005260104.1|	-	0.00079	19.5	0.0	0.0028	17.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|379004432|ref|YP_005260104.1|	-	0.0013	18.4	0.0	0.008	15.9	0.0	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
DUF2075	PF09848.4	gi|379004432|ref|YP_005260104.1|	-	0.0061	15.5	0.0	0.0092	14.9	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_16	PF13191.1	gi|379004432|ref|YP_005260104.1|	-	0.0079	16.2	0.0	0.02	14.9	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_17	PF13207.1	gi|379004432|ref|YP_005260104.1|	-	0.063	14.1	0.0	0.15	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|379004432|ref|YP_005260104.1|	-	0.087	12.2	0.0	0.16	11.3	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|379004432|ref|YP_005260104.1|	-	0.12	12.2	0.0	0.21	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379004432|ref|YP_005260104.1|	-	0.14	12.3	0.0	0.26	11.5	0.0	1.5	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Peptidase_M20	PF01546.23	gi|379004433|ref|YP_005260105.1|	-	2.5e-24	85.8	0.0	3.2e-24	85.4	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|379004433|ref|YP_005260105.1|	-	2.5e-11	43.2	0.0	4.6e-11	42.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|379004433|ref|YP_005260105.1|	-	0.0014	18.4	0.0	0.0023	17.7	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
HTH_42	PF06224.7	gi|379004434|ref|YP_005260106.1|	-	0.00035	20.0	0.2	0.00038	19.8	0.2	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|379004434|ref|YP_005260106.1|	-	0.031	14.1	0.0	0.038	13.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF1680	PF07944.7	gi|379004434|ref|YP_005260106.1|	-	0.033	12.4	0.0	0.033	12.4	0.0	1.0	1	0	0	1	1	1	0	Putative	glycosyl	hydrolase	of	unknown	function	(DUF1680)
HTH_20	PF12840.2	gi|379004434|ref|YP_005260106.1|	-	0.069	12.9	0.1	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|379004434|ref|YP_005260106.1|	-	0.08	12.6	0.0	0.11	12.2	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Cupin_2	PF07883.6	gi|379004435|ref|YP_005260107.1|	-	1.2e-14	53.5	0.2	1.7e-14	53.0	0.1	1.2	1	0	0	1	1	1	1	Cupin	domain
AraC_binding	PF02311.14	gi|379004435|ref|YP_005260107.1|	-	1.3e-10	41.1	0.0	1.7e-10	40.7	0.0	1.1	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_3	PF05899.7	gi|379004435|ref|YP_005260107.1|	-	9.1e-06	24.9	0.2	1.6e-05	24.2	0.1	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding_2	PF14525.1	gi|379004435|ref|YP_005260107.1|	-	0.00028	20.5	0.7	0.00036	20.1	0.3	1.4	1	1	0	1	1	1	1	AraC-binding-like	domain
Cupin_6	PF12852.2	gi|379004435|ref|YP_005260107.1|	-	0.00062	19.4	0.1	0.00067	19.3	0.1	1.1	1	0	0	1	1	1	1	Cupin
Cupin_1	PF00190.17	gi|379004435|ref|YP_005260107.1|	-	0.00069	19.0	0.3	0.001	18.5	0.2	1.3	1	0	0	1	1	1	1	Cupin
EutQ	PF06249.7	gi|379004435|ref|YP_005260107.1|	-	0.00085	18.8	0.0	0.00095	18.7	0.0	1.1	1	0	0	1	1	1	1	Ethanolamine	utilisation	protein	EutQ
ARD	PF03079.9	gi|379004435|ref|YP_005260107.1|	-	0.0029	17.5	0.1	0.0041	17.0	0.0	1.2	1	0	0	1	1	1	1	ARD/ARD'	family
DUF1637	PF07847.7	gi|379004435|ref|YP_005260107.1|	-	0.0039	16.5	0.0	0.34	10.2	0.0	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF1637)
CENP-C_C	PF11699.3	gi|379004435|ref|YP_005260107.1|	-	0.004	17.1	0.0	0.0085	16.0	0.0	1.5	1	1	1	2	2	2	1	Mif2/CENP-C	like
Cupin_7	PF12973.2	gi|379004435|ref|YP_005260107.1|	-	0.0094	15.7	0.0	0.012	15.3	0.0	1.3	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
Trypsin_2	PF13365.1	gi|379004436|ref|YP_005260108.1|	-	5.5e-15	55.3	0.0	8.8e-15	54.7	0.0	1.3	1	0	0	1	1	1	1	Trypsin-like	peptidase	domain
Trypsin	PF00089.21	gi|379004436|ref|YP_005260108.1|	-	6.7e-12	45.4	0.0	1.3e-11	44.4	0.0	1.4	1	1	0	1	1	1	1	Trypsin
PDZ_2	PF13180.1	gi|379004436|ref|YP_005260108.1|	-	5.1e-09	35.8	0.0	1.2e-08	34.7	0.0	1.7	1	0	0	1	1	1	1	PDZ	domain
PDZ	PF00595.19	gi|379004436|ref|YP_005260108.1|	-	4.5e-08	33.1	0.0	1.5e-07	31.4	0.0	1.8	2	0	0	2	2	2	1	PDZ	domain	(Also	known	as	DHR	or	GLGF)
Tricorn_PDZ	PF14685.1	gi|379004436|ref|YP_005260108.1|	-	0.044	13.5	0.2	0.26	11.1	0.0	2.4	2	1	0	2	2	2	0	Tricorn	protease	PDZ	domain
Peptidase_S29	PF02907.10	gi|379004436|ref|YP_005260108.1|	-	0.077	12.5	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Hepatitis	C	virus	NS3	protease
Peptidase_S46	PF10459.4	gi|379004436|ref|YP_005260108.1|	-	0.097	11.0	0.1	0.15	10.4	0.1	1.2	1	0	0	1	1	1	0	Peptidase	S46
Peptidase_S49	PF01343.13	gi|379004437|ref|YP_005260109.1|	-	1.7e-18	66.8	6.6	4.1e-17	62.3	4.6	2.3	1	1	0	1	1	1	1	Peptidase	family	S49
CLP_protease	PF00574.18	gi|379004437|ref|YP_005260109.1|	-	2.9e-13	49.9	0.4	9.1e-11	41.7	0.2	2.3	2	0	0	2	2	2	2	Clp	protease
SDH_sah	PF01972.11	gi|379004437|ref|YP_005260109.1|	-	0.0038	16.0	0.1	0.0063	15.3	0.1	1.3	1	0	0	1	1	1	1	Serine	dehydrogenase	proteinase
ABC_transp_aux	PF09822.4	gi|379004437|ref|YP_005260109.1|	-	0.01	15.3	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	0	ABC-type	uncharacterized	transport	system
DUF126	PF01989.11	gi|379004437|ref|YP_005260109.1|	-	0.056	13.1	0.1	3.5	7.3	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	DUF126
NAD_binding_10	PF13460.1	gi|379004437|ref|YP_005260109.1|	-	0.096	12.6	1.9	1.4	8.9	0.2	2.5	2	1	0	2	2	2	0	NADH(P)-binding
DHHA1	PF02272.14	gi|379004438|ref|YP_005260110.1|	-	3.9e-11	42.4	0.0	4.6e-11	42.2	0.0	1.1	1	0	0	1	1	1	1	DHHA1	domain
DHH	PF01368.15	gi|379004440|ref|YP_005260112.1|	-	2.5e-08	33.6	0.0	2.9e-08	33.4	0.0	1.1	1	0	0	1	1	1	1	DHH	family
ALS_ss_C	PF10369.4	gi|379004440|ref|YP_005260112.1|	-	0.14	11.8	0.0	0.25	11.0	0.0	1.3	1	0	0	1	1	1	0	Small	subunit	of	acetolactate	synthase
Ras	PF00071.17	gi|379004442|ref|YP_005260114.1|	-	6.3e-07	28.9	0.1	0.0067	15.8	0.0	2.0	2	0	0	2	2	2	2	Ras	family
Miro	PF08477.8	gi|379004442|ref|YP_005260114.1|	-	1.2e-06	29.0	0.0	1.6e-06	28.6	0.0	1.2	1	0	0	1	1	1	1	Miro-like	protein
PduV-EutP	PF10662.4	gi|379004442|ref|YP_005260114.1|	-	0.00056	19.4	0.0	0.00093	18.6	0.0	1.5	1	1	0	1	1	1	1	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|379004442|ref|YP_005260114.1|	-	0.0017	18.2	0.0	0.0022	17.9	0.0	1.2	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
DUF258	PF03193.11	gi|379004442|ref|YP_005260114.1|	-	0.026	13.6	0.3	0.05	12.7	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
SRP54	PF00448.17	gi|379004442|ref|YP_005260114.1|	-	0.033	13.6	0.2	0.073	12.4	0.1	1.6	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.1	gi|379004442|ref|YP_005260114.1|	-	0.034	14.0	0.0	0.051	13.4	0.0	1.3	1	1	0	1	1	1	0	AAA	domain
Arf	PF00025.16	gi|379004442|ref|YP_005260114.1|	-	0.057	12.6	0.0	0.083	12.1	0.0	1.5	1	1	0	1	1	1	0	ADP-ribosylation	factor	family
AAA_28	PF13521.1	gi|379004442|ref|YP_005260114.1|	-	0.065	13.2	0.0	0.079	12.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|379004442|ref|YP_005260114.1|	-	0.075	12.9	0.2	0.1	12.4	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379004442|ref|YP_005260114.1|	-	0.093	12.8	0.1	0.14	12.2	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|379004442|ref|YP_005260114.1|	-	0.1	12.1	0.3	10	5.5	0.1	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.1	gi|379004442|ref|YP_005260114.1|	-	0.12	13.1	0.1	0.22	12.3	0.1	1.4	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379004442|ref|YP_005260114.1|	-	0.13	11.9	0.6	0.22	11.1	0.4	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_16	PF13191.1	gi|379004442|ref|YP_005260114.1|	-	0.14	12.1	1.1	0.36	10.7	0.7	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_5	PF07728.9	gi|379004442|ref|YP_005260114.1|	-	0.15	11.7	0.3	0.4	10.3	0.1	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
KaiC	PF06745.8	gi|379004445|ref|YP_005260117.1|	-	1.7e-14	53.5	0.0	2.4e-13	49.7	0.0	2.0	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379004445|ref|YP_005260117.1|	-	1.6e-10	40.7	0.0	3.1e-10	39.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004445|ref|YP_005260117.1|	-	2.9e-08	33.9	0.0	4e-08	33.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
GvpD	PF07088.6	gi|379004445|ref|YP_005260117.1|	-	3.6e-05	22.2	0.2	0.058	11.7	0.1	2.0	2	0	0	2	2	2	2	GvpD	gas	vesicle	protein
AAA_14	PF13173.1	gi|379004445|ref|YP_005260117.1|	-	7e-05	22.7	0.0	0.00012	21.9	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379004445|ref|YP_005260117.1|	-	0.00014	21.5	0.0	0.00036	20.2	0.0	1.8	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_24	PF13479.1	gi|379004445|ref|YP_005260117.1|	-	0.00021	20.9	1.3	0.0018	17.9	0.6	2.5	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379004445|ref|YP_005260117.1|	-	0.00028	21.7	0.0	0.00045	21.0	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379004445|ref|YP_005260117.1|	-	0.00082	19.5	0.0	0.002	18.3	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_33	PF13671.1	gi|379004445|ref|YP_005260117.1|	-	0.0018	18.1	0.0	0.0036	17.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379004445|ref|YP_005260117.1|	-	0.0068	15.8	0.0	0.01	15.2	0.0	1.6	1	1	0	1	1	1	1	AAA-like	domain
NB-ARC	PF00931.17	gi|379004445|ref|YP_005260117.1|	-	0.0069	15.2	0.0	0.0074	15.1	0.0	1.1	1	0	0	1	1	1	1	NB-ARC	domain
AAA_23	PF13476.1	gi|379004445|ref|YP_005260117.1|	-	0.012	15.9	0.0	0.02	15.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|379004445|ref|YP_005260117.1|	-	0.034	14.1	0.0	0.089	12.7	0.0	1.7	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_18	PF13238.1	gi|379004445|ref|YP_005260117.1|	-	0.037	14.3	0.4	0.19	12.0	0.3	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_11	PF13086.1	gi|379004445|ref|YP_005260117.1|	-	0.038	13.5	0.0	0.038	13.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|379004445|ref|YP_005260117.1|	-	0.039	13.4	0.0	0.14	11.5	0.0	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
NACHT	PF05729.7	gi|379004445|ref|YP_005260117.1|	-	0.05	13.2	0.0	0.11	12.0	0.0	1.8	1	1	0	1	1	1	0	NACHT	domain
AAA_29	PF13555.1	gi|379004445|ref|YP_005260117.1|	-	0.075	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
UPF0079	PF02367.12	gi|379004445|ref|YP_005260117.1|	-	0.085	12.4	0.0	4.7	6.8	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|379004445|ref|YP_005260117.1|	-	0.1	12.3	0.1	0.24	11.0	0.0	1.6	2	0	0	2	2	2	0	Archaeal	ATPase
DUF2075	PF09848.4	gi|379004445|ref|YP_005260117.1|	-	0.12	11.3	0.0	0.14	11.0	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
RuvB_N	PF05496.7	gi|379004445|ref|YP_005260117.1|	-	0.13	11.3	0.0	0.27	10.2	0.0	1.5	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
DUF3800	PF12686.2	gi|379004446|ref|YP_005260118.1|	-	1.4e-05	24.8	0.0	0.0016	18.1	0.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3800)
Arch_ATPase	PF01637.13	gi|379004447|ref|YP_005260119.1|	-	9.3e-56	189.1	0.0	1.5e-55	188.4	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|379004447|ref|YP_005260119.1|	-	0.00016	21.7	0.1	0.00054	20.0	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379004447|ref|YP_005260119.1|	-	0.00097	19.3	0.0	0.0016	18.6	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|379004447|ref|YP_005260119.1|	-	0.038	13.3	1.9	0.089	12.1	0.3	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|379004447|ref|YP_005260119.1|	-	0.072	12.5	0.5	8.8	5.6	0.0	2.7	2	1	1	3	3	3	0	AAA-like	domain
NACHT	PF05729.7	gi|379004447|ref|YP_005260119.1|	-	0.077	12.6	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
AAA_33	PF13671.1	gi|379004447|ref|YP_005260119.1|	-	0.1	12.5	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|379004447|ref|YP_005260119.1|	-	0.12	13.2	0.2	0.4	11.4	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
PaREP1	PF05942.6	gi|379004448|ref|YP_005260120.1|	-	1.4e-31	108.6	1.6	1.4e-31	108.6	1.1	1.8	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DUF1646	PF07854.7	gi|379004449|ref|YP_005260121.1|	-	3.3e-120	401.3	28.2	3.9e-120	401.1	19.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1646)
CitMHS	PF03600.11	gi|379004449|ref|YP_005260121.1|	-	0.1	11.1	24.2	0.036	12.6	6.0	3.1	1	1	2	3	3	3	0	Citrate	transporter
DUF754	PF05449.6	gi|379004449|ref|YP_005260121.1|	-	6.4	6.8	10.6	3.5	7.7	3.7	3.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF754)
Chorismate_bind	PF00425.13	gi|379004451|ref|YP_005260123.1|	-	1.5e-71	240.7	0.0	2e-71	240.3	0.0	1.1	1	0	0	1	1	1	1	chorismate	binding	enzyme
Band_7	PF01145.20	gi|379004454|ref|YP_005260126.1|	-	1.7e-33	116.0	14.6	1e-32	113.4	9.8	2.0	1	1	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|379004454|ref|YP_005260126.1|	-	0.054	13.0	1.0	0.085	12.3	0.0	1.9	2	0	0	2	2	2	0	SPFH	domain-Band	7	family
5-FTHF_cyc-lig	PF01812.15	gi|379004455|ref|YP_005260127.1|	-	3.2e-30	105.2	0.0	3.8e-30	105.0	0.0	1.0	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
Phos_pyr_kin	PF08543.7	gi|379004456|ref|YP_005260128.1|	-	5.1e-94	314.0	0.1	7.3e-94	313.5	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Aldolase_2	PF10120.4	gi|379004456|ref|YP_005260128.1|	-	6.8e-62	207.8	0.2	5.4e-61	204.8	0.0	2.1	2	0	0	2	2	2	1	Putative	aldolase
PfkB	PF00294.19	gi|379004456|ref|YP_005260128.1|	-	1e-14	54.3	0.1	1.6e-14	53.7	0.1	1.2	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.12	gi|379004456|ref|YP_005260128.1|	-	0.0015	17.8	0.1	0.0025	17.1	0.0	1.5	1	0	0	1	1	1	1	Carbohydrate	kinase
HTH_24	PF13412.1	gi|379004459|ref|YP_005260131.1|	-	2.3e-05	23.6	0.0	4.2e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379004459|ref|YP_005260131.1|	-	6.1e-05	22.6	0.0	8.7e-05	22.1	0.0	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379004459|ref|YP_005260131.1|	-	0.00025	20.7	0.2	0.00043	19.9	0.1	1.4	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|379004459|ref|YP_005260131.1|	-	0.00026	20.7	0.1	0.00068	19.3	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379004459|ref|YP_005260131.1|	-	0.00031	20.3	0.0	0.0005	19.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.11	gi|379004459|ref|YP_005260131.1|	-	0.0013	18.8	0.1	0.0016	18.5	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_27	PF13463.1	gi|379004459|ref|YP_005260131.1|	-	0.02	15.2	0.1	0.031	14.5	0.1	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_DeoR	PF08220.7	gi|379004459|ref|YP_005260131.1|	-	0.028	13.9	0.1	0.047	13.2	0.1	1.4	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|379004459|ref|YP_005260131.1|	-	0.14	11.7	0.3	0.32	10.6	0.0	1.6	2	0	0	2	2	2	0	MarR	family
Oxidored_molyb	PF00174.14	gi|379004461|ref|YP_005260133.1|	-	7.3e-38	129.6	0.0	9e-38	129.3	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DUF1129	PF06570.6	gi|379004462|ref|YP_005260134.1|	-	6.4	6.0	7.9	0.47	9.7	1.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1129)
MacB_PCD	PF12704.2	gi|379004463|ref|YP_005260135.1|	-	0.12	11.9	0.4	0.14	11.7	0.2	1.1	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
DUF948	PF06103.6	gi|379004463|ref|YP_005260135.1|	-	0.14	12.0	3.1	0.18	11.6	2.2	1.2	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF948)
NMN_transporter	PF04973.7	gi|379004463|ref|YP_005260135.1|	-	0.15	11.4	1.7	0.25	10.8	1.2	1.4	1	0	0	1	1	1	0	Nicotinamide	mononucleotide	transporter
NUDIX	PF00293.23	gi|379004464|ref|YP_005260136.1|	-	1.1e-16	60.7	0.0	1.4e-16	60.3	0.0	1.2	1	0	0	1	1	1	1	NUDIX	domain
DEAD	PF00270.24	gi|379004465|ref|YP_005260137.1|	-	4.7e-32	110.7	0.0	1.7e-31	109.0	0.0	1.9	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DEAD_assoc	PF08494.6	gi|379004465|ref|YP_005260137.1|	-	4.6e-30	104.7	0.0	1.2e-29	103.4	0.0	1.8	1	0	0	1	1	1	1	DEAD/H	associated
Helicase_C	PF00271.26	gi|379004465|ref|YP_005260137.1|	-	8.7e-17	60.7	0.5	3.7e-16	58.7	0.1	2.3	3	0	0	3	3	3	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|379004465|ref|YP_005260137.1|	-	5e-06	26.4	0.0	1.2e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.1	gi|379004465|ref|YP_005260137.1|	-	0.00051	19.4	0.4	0.0018	17.7	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
SNF2_N	PF00176.18	gi|379004465|ref|YP_005260137.1|	-	0.00055	18.8	0.0	0.0011	17.7	0.0	1.4	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_19	PF13245.1	gi|379004465|ref|YP_005260137.1|	-	0.0011	18.6	0.6	0.044	13.5	0.1	3.1	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|379004465|ref|YP_005260137.1|	-	0.0012	18.9	0.0	0.0037	17.4	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
HypA	PF01155.14	gi|379004465|ref|YP_005260137.1|	-	0.016	14.8	0.0	0.038	13.6	0.0	1.6	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
SecA_DEAD	PF07517.9	gi|379004465|ref|YP_005260137.1|	-	0.036	13.3	0.0	0.098	11.9	0.0	1.7	2	0	0	2	2	2	0	SecA	DEAD-like	domain
T4SS-DNA_transf	PF02534.9	gi|379004465|ref|YP_005260137.1|	-	0.2	10.2	0.0	0.32	9.5	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
Fumerase_C	PF05683.7	gi|379004466|ref|YP_005260138.1|	-	3.4e-61	205.9	0.1	3.9e-61	205.7	0.1	1.0	1	0	0	1	1	1	1	Fumarase	C-terminus
Fumerase	PF05681.9	gi|379004467|ref|YP_005260139.1|	-	7.4e-85	284.2	0.0	8.4e-85	284.1	0.0	1.0	1	0	0	1	1	1	1	Fumarate	hydratase	(Fumerase)
H-K_ATPase_N	PF09040.6	gi|379004467|ref|YP_005260139.1|	-	0.037	14.1	0.1	0.037	14.1	0.1	2.0	2	0	0	2	2	2	0	Gastric	H+/K+-ATPase,	N	terminal	domain
Flavin_Reduct	PF01613.13	gi|379004468|ref|YP_005260140.1|	-	1.5e-13	50.8	0.0	1.9e-13	50.5	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
ThiS	PF02597.15	gi|379004469|ref|YP_005260141.1|	-	6.7e-21	74.5	0.0	7.6e-21	74.3	0.0	1.0	1	0	0	1	1	1	1	ThiS	family
Urm1	PF09138.6	gi|379004469|ref|YP_005260141.1|	-	2.4e-07	30.7	0.0	2.7e-07	30.6	0.0	1.0	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
TGS	PF02824.16	gi|379004469|ref|YP_005260141.1|	-	0.088	12.6	0.2	0.26	11.1	0.1	1.8	2	0	0	2	2	2	0	TGS	domain
NLE	PF08154.7	gi|379004469|ref|YP_005260141.1|	-	0.12	12.3	0.0	0.19	11.7	0.0	1.4	1	1	0	1	1	1	0	NLE	(NUC135)	domain
PTPS	PF01242.14	gi|379004470|ref|YP_005260142.1|	-	1.5e-07	31.1	0.0	1.8e-07	30.8	0.0	1.1	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
DUF1886	PF09171.5	gi|379004471|ref|YP_005260143.1|	-	1.5e-05	24.1	0.0	2.1e-05	23.6	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1886)
EndIII_4Fe-2S	PF10576.4	gi|379004471|ref|YP_005260143.1|	-	1.9	8.8	6.5	2.8	8.2	4.5	1.3	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
DUF711	PF05167.7	gi|379004472|ref|YP_005260144.1|	-	1.3e-57	195.3	0.0	3.6e-57	193.8	0.0	1.6	1	1	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
NTP_transf_2	PF01909.18	gi|379004473|ref|YP_005260145.1|	-	3.6e-09	36.8	0.0	5.1e-09	36.3	0.0	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379004473|ref|YP_005260145.1|	-	0.072	12.6	0.0	0.098	12.2	0.0	1.3	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|379004474|ref|YP_005260146.1|	-	1.5e-33	115.1	0.5	1.7e-33	114.9	0.3	1.0	1	0	0	1	1	1	1	HEPN	domain
PaREP1	PF05942.6	gi|379004474|ref|YP_005260146.1|	-	0.13	12.1	0.8	0.18	11.7	0.6	1.3	1	0	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
ASCH	PF04266.9	gi|379004475|ref|YP_005260147.1|	-	2.2e-12	47.2	0.1	3.2e-12	46.7	0.0	1.2	1	0	0	1	1	1	1	ASCH	domain
HTH_1	PF00126.22	gi|379004475|ref|YP_005260147.1|	-	0.025	14.2	0.0	0.067	12.9	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Radical_SAM	PF04055.16	gi|379004476|ref|YP_005260148.1|	-	3.3e-05	24.1	0.0	9.9e-05	22.5	0.0	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
NurA	PF09376.5	gi|379004477|ref|YP_005260149.1|	-	8.1e-31	107.3	0.4	3e-30	105.5	0.0	2.1	2	1	0	2	2	2	1	NurA	domain
TRAP_beta	PF05753.9	gi|379004477|ref|YP_005260149.1|	-	0.17	11.0	0.0	0.35	9.9	0.0	1.4	1	0	0	1	1	1	0	Translocon-associated	protein	beta	(TRAPB)
AAA_10	PF12846.2	gi|379004478|ref|YP_005260150.1|	-	1.7e-22	80.2	1.1	1.9e-14	53.8	0.2	2.1	1	1	0	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|379004478|ref|YP_005260150.1|	-	1.3e-19	70.8	0.0	2.5e-19	70.0	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|379004478|ref|YP_005260150.1|	-	1.1e-10	40.7	0.0	3.3e-09	35.8	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|379004478|ref|YP_005260150.1|	-	8.8e-06	25.3	0.0	0.00028	20.4	0.0	2.4	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
MobB	PF03205.9	gi|379004478|ref|YP_005260150.1|	-	6.8e-05	22.5	0.1	0.00014	21.6	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|379004478|ref|YP_005260150.1|	-	0.00026	19.8	0.0	0.0004	19.2	0.0	1.2	1	0	0	1	1	1	1	ArgK	protein
AAA_22	PF13401.1	gi|379004478|ref|YP_005260150.1|	-	0.00027	21.0	0.0	0.11	12.6	0.0	2.5	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|379004478|ref|YP_005260150.1|	-	0.00045	19.2	0.0	0.00075	18.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_16	PF13191.1	gi|379004478|ref|YP_005260150.1|	-	0.00053	20.0	0.1	0.0026	17.7	0.1	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|379004478|ref|YP_005260150.1|	-	0.001	18.8	0.4	0.086	12.5	0.0	2.2	2	0	0	2	2	2	1	Archaeal	ATPase
Zot	PF05707.7	gi|379004478|ref|YP_005260150.1|	-	0.0025	17.3	0.1	0.044	13.2	0.0	2.1	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
MMR_HSR1	PF01926.18	gi|379004478|ref|YP_005260150.1|	-	0.015	15.2	0.1	0.062	13.2	0.1	2.1	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
ABC_tran	PF00005.22	gi|379004478|ref|YP_005260150.1|	-	0.034	14.4	0.0	0.065	13.5	0.0	1.5	1	1	0	1	1	1	0	ABC	transporter
PhoH	PF02562.11	gi|379004478|ref|YP_005260150.1|	-	0.037	13.2	0.1	0.15	11.2	0.0	1.9	2	0	0	2	2	2	0	PhoH-like	protein
AAA	PF00004.24	gi|379004478|ref|YP_005260150.1|	-	0.061	13.5	0.1	1	9.5	0.0	2.7	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Cas_Cas1	PF01867.11	gi|379004478|ref|YP_005260150.1|	-	0.11	11.5	0.1	0.27	10.2	0.1	1.6	1	1	0	1	1	1	0	CRISPR	associated	protein	Cas1
AAA_30	PF13604.1	gi|379004478|ref|YP_005260150.1|	-	0.14	11.7	0.2	2.4	7.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
CbiA	PF01656.18	gi|379004478|ref|YP_005260150.1|	-	0.14	11.5	0.0	0.25	10.7	0.0	1.5	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
RNA_helicase	PF00910.17	gi|379004478|ref|YP_005260150.1|	-	0.14	12.3	0.0	0.27	11.4	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
CTP-dep_RFKase	PF01982.11	gi|379004479|ref|YP_005260151.1|	-	4.2e-48	161.9	0.0	5.7e-48	161.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
HTH_28	PF13518.1	gi|379004479|ref|YP_005260151.1|	-	1.8e-05	24.6	0.1	5.5e-05	23.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|379004479|ref|YP_005260151.1|	-	0.00012	21.6	0.1	0.00028	20.4	0.1	1.6	1	0	0	1	1	1	1	MarR	family
Antitoxin-MazE	PF04014.13	gi|379004479|ref|YP_005260151.1|	-	0.00015	21.4	0.8	0.044	13.5	0.2	2.6	2	0	0	2	2	2	2	Antidote-toxin	recognition	MazE
HTH_23	PF13384.1	gi|379004479|ref|YP_005260151.1|	-	0.00037	20.0	0.1	0.0011	18.4	0.1	1.8	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_29	PF13551.1	gi|379004479|ref|YP_005260151.1|	-	0.003	17.7	0.0	0.005	16.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_20	PF12840.2	gi|379004479|ref|YP_005260151.1|	-	0.0043	16.8	0.2	0.0091	15.7	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HemN_C	PF06969.11	gi|379004479|ref|YP_005260151.1|	-	0.027	14.5	0.0	0.078	13.0	0.0	1.8	1	1	0	1	1	1	0	HemN	C-terminal	domain
HTH_1	PF00126.22	gi|379004479|ref|YP_005260151.1|	-	0.042	13.5	0.1	0.13	12.0	0.0	1.9	1	1	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_24	PF13412.1	gi|379004479|ref|YP_005260151.1|	-	0.049	13.0	0.1	0.087	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
ANT	PF03374.9	gi|379004479|ref|YP_005260151.1|	-	0.063	13.3	0.0	1.9	8.5	0.0	2.3	1	1	1	2	2	2	0	Phage	antirepressor	protein	KilAC	domain
HTH_IclR	PF09339.5	gi|379004479|ref|YP_005260151.1|	-	0.09	12.3	0.2	0.17	11.4	0.1	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Aldolase_II	PF00596.16	gi|379004480|ref|YP_005260152.1|	-	1.5e-43	148.5	0.1	1.7e-43	148.3	0.1	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
DUF3148	PF11347.3	gi|379004480|ref|YP_005260152.1|	-	0.088	12.4	0.1	0.33	10.5	0.0	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3148)
DAO	PF01266.19	gi|379004483|ref|YP_005260155.1|	-	1.9e-11	43.4	4.7	1.8e-05	23.8	1.0	2.8	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Trp_halogenase	PF04820.9	gi|379004483|ref|YP_005260155.1|	-	2.1e-10	39.8	0.9	0.0042	15.7	0.4	3.0	2	1	1	3	3	3	3	Tryptophan	halogenase
FAD_oxidored	PF12831.2	gi|379004483|ref|YP_005260155.1|	-	3.5e-07	29.6	6.2	1e-06	28.1	4.3	1.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004483|ref|YP_005260155.1|	-	4.3e-07	29.1	4.8	0.00014	20.8	1.4	2.2	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|379004483|ref|YP_005260155.1|	-	1e-06	28.1	0.9	0.00025	20.2	0.2	3.1	3	0	0	3	3	3	1	FAD	binding	domain
Thi4	PF01946.12	gi|379004483|ref|YP_005260155.1|	-	2.4e-06	26.8	0.2	6.2e-06	25.4	0.0	1.8	2	0	0	2	2	2	1	Thi4	family
GIDA	PF01134.17	gi|379004483|ref|YP_005260155.1|	-	2.9e-06	26.3	0.6	4.8e-06	25.6	0.5	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|379004483|ref|YP_005260155.1|	-	9.4e-06	25.5	1.1	2.7e-05	24.0	0.7	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|379004483|ref|YP_005260155.1|	-	0.00012	20.7	0.2	0.00018	20.1	0.1	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|379004483|ref|YP_005260155.1|	-	0.00054	19.8	0.1	0.00096	19.0	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|379004483|ref|YP_005260155.1|	-	0.0052	16.4	0.3	0.01	15.5	0.2	1.5	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Lycopene_cycl	PF05834.7	gi|379004483|ref|YP_005260155.1|	-	0.0066	15.4	0.3	0.066	12.1	0.2	2.1	2	0	0	2	2	2	1	Lycopene	cyclase	protein
ThiF	PF00899.16	gi|379004483|ref|YP_005260155.1|	-	0.042	13.6	0.3	0.098	12.4	0.2	1.6	1	0	0	1	1	1	0	ThiF	family
ApbA	PF02558.11	gi|379004483|ref|YP_005260155.1|	-	0.054	12.9	0.1	0.1	12.0	0.1	1.5	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Lactamase_B_3	PF13483.1	gi|379004484|ref|YP_005260156.1|	-	2.6e-28	98.7	0.1	3.2e-28	98.4	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|379004484|ref|YP_005260156.1|	-	1.5e-20	73.6	0.0	1.9e-20	73.2	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|379004484|ref|YP_005260156.1|	-	1.8e-15	57.1	2.2	3.1e-15	56.3	1.5	1.4	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Hjc	PF01870.13	gi|379004486|ref|YP_005260158.1|	-	4.6e-25	87.0	0.0	5.6e-25	86.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
NERD	PF08378.6	gi|379004486|ref|YP_005260158.1|	-	0.028	14.6	0.0	0.032	14.4	0.0	1.3	1	0	0	1	1	1	0	Nuclease-related	domain
TBP	PF00352.16	gi|379004488|ref|YP_005260160.1|	-	1.9e-68	225.8	0.0	1.7e-34	117.0	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|379004488|ref|YP_005260160.1|	-	0.0021	18.0	0.0	0.14	12.2	0.0	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
GCD14	PF08704.5	gi|379004490|ref|YP_005260162.1|	-	1.1e-29	103.6	0.0	1.4e-29	103.3	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.14	gi|379004490|ref|YP_005260162.1|	-	6.9e-07	29.0	0.0	1.5e-06	27.9	0.0	1.6	1	1	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_24	PF13578.1	gi|379004490|ref|YP_005260162.1|	-	1.9e-05	25.4	0.1	3.4e-05	24.6	0.1	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379004490|ref|YP_005260162.1|	-	6.8e-05	23.4	0.0	0.00012	22.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379004490|ref|YP_005260162.1|	-	0.00017	21.6	0.5	0.00093	19.2	0.3	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379004490|ref|YP_005260162.1|	-	0.00021	20.9	0.0	0.00028	20.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|379004490|ref|YP_005260162.1|	-	0.0037	16.8	0.0	0.0055	16.3	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.1	gi|379004490|ref|YP_005260162.1|	-	0.047	13.4	0.0	0.26	10.9	0.0	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|379004490|ref|YP_005260162.1|	-	0.071	12.4	0.0	0.1	12.0	0.0	1.3	1	1	0	1	1	1	0	Methyltransferase	small	domain
tRNA-synt_2b	PF00587.20	gi|379004491|ref|YP_005260163.1|	-	2.1e-24	86.0	1.6	3.2e-24	85.4	1.1	1.2	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|379004491|ref|YP_005260163.1|	-	1.8e-21	75.8	0.0	4.1e-21	74.7	0.0	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.6	gi|379004491|ref|YP_005260163.1|	-	6.8e-10	38.7	0.0	1.3e-09	37.8	0.0	1.4	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
Ribosomal_S26e	PF01283.14	gi|379004492|ref|YP_005260164.1|	-	4.3e-30	104.2	2.8	4.6e-30	104.1	2.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
Sgf11	PF08209.6	gi|379004492|ref|YP_005260164.1|	-	0.067	12.5	0.2	0.067	12.5	0.2	1.9	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF164	PF02591.10	gi|379004492|ref|YP_005260164.1|	-	0.24	11.2	0.1	0.24	11.2	0.1	2.1	2	1	0	2	2	2	0	Putative	zinc	ribbon	domain
Methyltrn_RNA_2	PF04013.7	gi|379004493|ref|YP_005260165.1|	-	1.8e-09	37.4	0.0	2.5e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	Putative	SAM-dependent	RNA	methyltransferase
CDP-OH_P_transf	PF01066.16	gi|379004494|ref|YP_005260166.1|	-	1.8e-11	44.2	11.8	4.8e-11	42.8	8.2	1.7	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
DUF2286	PF10051.4	gi|379004495|ref|YP_005260167.1|	-	4.2e-51	172.3	0.1	4.6e-51	172.1	0.1	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
DNA_pol_B	PF00136.16	gi|379004496|ref|YP_005260168.1|	-	1.9e-77	261.0	0.2	2.6e-77	260.6	0.1	1.1	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|379004496|ref|YP_005260168.1|	-	9.4e-30	103.5	0.0	1.9e-29	102.5	0.0	1.4	1	0	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.1	gi|379004496|ref|YP_005260168.1|	-	0.00034	20.4	0.1	0.0018	18.1	0.0	2.3	2	0	0	2	2	2	1	RNase_H	superfamily
DNA_pol_B_exo2	PF10108.4	gi|379004496|ref|YP_005260168.1|	-	0.00039	20.0	0.0	0.00086	18.9	0.0	1.5	1	0	0	1	1	1	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
Halo_GVPC	PF05465.8	gi|379004496|ref|YP_005260168.1|	-	1.5	8.8	4.5	3.2	7.7	3.1	1.6	1	0	0	1	1	1	0	Halobacterial	gas	vesicle	protein	C	(GVPC)	repeat
HMG-CoA_red	PF00368.13	gi|379004498|ref|YP_005260170.1|	-	3.3e-150	499.8	1.6	3.7e-150	499.7	1.1	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
Thiolase_C	PF02803.13	gi|379004499|ref|YP_005260171.1|	-	1.3e-07	31.0	0.1	2.7e-07	30.0	0.1	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|379004499|ref|YP_005260171.1|	-	0.00015	21.3	0.1	0.58	9.8	0.0	2.6	2	0	0	2	2	2	2	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
GHMP_kinases_N	PF00288.21	gi|379004499|ref|YP_005260171.1|	-	0.016	15.2	0.4	1.8	8.6	0.0	2.9	2	0	0	2	2	2	0	GHMP	kinases	N	terminal	domain
Thiolase_N	PF00108.18	gi|379004499|ref|YP_005260171.1|	-	0.091	11.7	0.5	0.36	9.7	0.1	2.2	2	1	0	2	2	2	0	Thiolase,	N-terminal	domain
AAA_26	PF13500.1	gi|379004499|ref|YP_005260171.1|	-	0.11	12.1	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Ketoacyl-synt_C	PF02801.17	gi|379004499|ref|YP_005260171.1|	-	0.12	12.1	0.9	0.43	10.4	0.0	2.4	4	0	0	4	4	4	0	Beta-ketoacyl	synthase,	C-terminal	domain
DUF35	PF01796.12	gi|379004500|ref|YP_005260172.1|	-	2e-16	59.9	0.4	2.8e-16	59.4	0.2	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|379004500|ref|YP_005260172.1|	-	3.4e-10	39.5	1.5	5.7e-10	38.8	1.1	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Mtf2_C	PF14061.1	gi|379004500|ref|YP_005260172.1|	-	0.14	12.0	0.5	0.89	9.4	0.1	2.2	2	0	0	2	2	2	0	Polycomb-like	MTF2	factor	2
ACP_syn_III_C	PF08541.5	gi|379004501|ref|YP_005260173.1|	-	1.9e-12	46.9	0.0	7.3e-12	45.1	0.0	1.9	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
HMG_CoA_synt_N	PF01154.12	gi|379004501|ref|YP_005260173.1|	-	0.00042	19.9	0.1	0.00057	19.4	0.1	1.2	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
HMG_CoA_synt_C	PF08540.5	gi|379004501|ref|YP_005260173.1|	-	0.00057	19.4	0.0	0.0017	17.8	0.0	1.7	1	1	1	2	2	2	1	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
Thiolase_N	PF00108.18	gi|379004501|ref|YP_005260173.1|	-	0.0019	17.2	0.2	0.003	16.5	0.1	1.2	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|379004501|ref|YP_005260173.1|	-	0.018	14.6	0.9	0.04	13.5	0.1	1.9	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.17	gi|379004501|ref|YP_005260173.1|	-	0.18	11.6	1.4	4.3	7.2	0.0	3.0	4	0	0	4	4	4	0	Beta-ketoacyl	synthase,	C-terminal	domain
FaeA	PF04703.7	gi|379004502|ref|YP_005260174.1|	-	2.3e-07	30.8	0.2	2.7e-07	30.6	0.1	1.1	1	0	0	1	1	1	1	FaeA-like	protein
HTH_24	PF13412.1	gi|379004502|ref|YP_005260174.1|	-	3.2e-06	26.4	0.7	4.1e-06	26.0	0.5	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_9	PF08221.6	gi|379004502|ref|YP_005260174.1|	-	1.1e-05	25.2	0.1	1.4e-05	24.9	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_5	PF01022.15	gi|379004502|ref|YP_005260174.1|	-	0.00083	18.9	0.1	0.001	18.6	0.1	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|379004502|ref|YP_005260174.1|	-	0.0024	17.3	0.1	0.004	16.6	0.1	1.5	1	1	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|379004502|ref|YP_005260174.1|	-	0.0052	16.4	0.0	0.0072	15.9	0.0	1.1	1	0	0	1	1	1	1	MarR	family
B-block_TFIIIC	PF04182.7	gi|379004502|ref|YP_005260174.1|	-	0.0055	16.5	0.2	0.0075	16.0	0.1	1.2	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_11	PF08279.7	gi|379004502|ref|YP_005260174.1|	-	0.0059	16.2	0.5	0.0074	15.9	0.3	1.1	1	0	0	1	1	1	1	HTH	domain
DUF977	PF06163.6	gi|379004502|ref|YP_005260174.1|	-	0.0076	15.9	0.1	0.0077	15.9	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF977)
HTH_Crp_2	PF13545.1	gi|379004502|ref|YP_005260174.1|	-	0.0084	15.8	0.2	0.014	15.1	0.1	1.4	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_20	PF12840.2	gi|379004502|ref|YP_005260174.1|	-	0.012	15.3	0.0	0.015	15.0	0.0	1.1	1	0	0	1	1	1	0	Helix-turn-helix	domain
Phage_rep_O	PF04492.8	gi|379004502|ref|YP_005260174.1|	-	0.015	15.5	0.1	0.015	15.4	0.0	1.2	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
AsiA	PF09010.5	gi|379004502|ref|YP_005260174.1|	-	0.015	15.1	0.1	0.017	14.9	0.1	1.0	1	0	0	1	1	1	0	Anti-Sigma	Factor	A
HTH_27	PF13463.1	gi|379004502|ref|YP_005260174.1|	-	0.018	15.3	0.0	0.023	15.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|379004502|ref|YP_005260174.1|	-	0.018	14.7	0.2	0.027	14.1	0.1	1.4	1	1	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_28	PF13518.1	gi|379004502|ref|YP_005260174.1|	-	0.053	13.5	0.1	0.13	12.3	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
RNA_pol_Rpc34	PF05158.7	gi|379004502|ref|YP_005260174.1|	-	0.061	12.5	0.3	0.06	12.5	0.2	1.2	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_IclR	PF09339.5	gi|379004502|ref|YP_005260174.1|	-	0.061	12.9	0.0	0.082	12.5	0.0	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Cdc6_C	PF09079.6	gi|379004502|ref|YP_005260174.1|	-	0.071	12.8	0.1	0.085	12.5	0.0	1.2	1	0	0	1	1	1	0	CDC6,	C	terminal
RepL	PF05732.6	gi|379004502|ref|YP_005260174.1|	-	0.073	12.2	0.0	0.084	12.0	0.0	1.2	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
3H	PF02829.9	gi|379004502|ref|YP_005260174.1|	-	0.11	12.4	0.1	0.13	12.3	0.1	1.1	1	0	0	1	1	1	0	3H	domain
MarR	PF01047.17	gi|379004502|ref|YP_005260174.1|	-	0.12	12.0	0.2	0.17	11.6	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_20	PF12840.2	gi|379004503|ref|YP_005260175.1|	-	0.0026	17.5	0.1	0.0052	16.5	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|379004503|ref|YP_005260175.1|	-	0.029	13.9	0.0	0.062	12.8	0.0	1.5	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
TT_ORF2	PF02957.10	gi|379004503|ref|YP_005260175.1|	-	0.21	12.2	3.3	0.33	11.6	2.3	1.3	1	0	0	1	1	1	0	TT	viral	ORF2
PAT1	PF09770.4	gi|379004503|ref|YP_005260175.1|	-	2.4	6.2	8.3	2.9	6.0	5.7	1.0	1	0	0	1	1	1	0	Topoisomerase	II-associated	protein	PAT1
Ribosomal_S25	PF03297.10	gi|379004504|ref|YP_005260176.1|	-	9.1e-11	41.7	3.8	1e-10	41.5	2.6	1.1	1	0	0	1	1	1	1	S25	ribosomal	protein
TrmB	PF01978.14	gi|379004504|ref|YP_005260176.1|	-	0.0026	17.4	0.2	0.0052	16.4	0.1	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DDRGK	PF09756.4	gi|379004504|ref|YP_005260176.1|	-	0.0031	16.9	4.4	0.0049	16.3	3.1	1.3	1	1	0	1	1	1	1	DDRGK	domain
Rrf2	PF02082.15	gi|379004504|ref|YP_005260176.1|	-	0.044	13.8	0.1	0.083	13.0	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator
EAP30	PF04157.11	gi|379004504|ref|YP_005260176.1|	-	0.048	12.8	1.1	0.098	11.7	0.0	1.7	1	1	1	2	2	2	0	EAP30/Vps36	family
F-112	PF09645.5	gi|379004504|ref|YP_005260176.1|	-	0.29	11.0	0.1	0.29	11.0	0.1	1.9	1	1	1	2	2	2	0	F-112	protein
DJ-1_PfpI	PF01965.19	gi|379004506|ref|YP_005260178.1|	-	2.3e-37	127.7	0.0	2.7e-37	127.4	0.0	1.1	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|379004506|ref|YP_005260178.1|	-	9.3e-10	38.0	0.0	1.9e-09	36.9	0.0	1.4	1	1	0	1	1	1	1	Putative	amidotransferase
GATase	PF00117.23	gi|379004506|ref|YP_005260178.1|	-	0.00032	20.1	0.0	0.00043	19.7	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|379004506|ref|YP_005260178.1|	-	0.0025	17.4	0.0	0.0033	17.0	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase_5	PF13507.1	gi|379004506|ref|YP_005260178.1|	-	0.049	12.5	0.0	0.087	11.7	0.0	1.4	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Na_Ca_ex	PF01699.19	gi|379004507|ref|YP_005260179.1|	-	1.7e-16	60.0	20.8	3.4e-08	33.2	5.7	2.1	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
PSI_PsaJ	PF01701.13	gi|379004507|ref|YP_005260179.1|	-	0.043	13.5	0.3	0.26	11.0	0.2	2.4	1	0	0	1	1	1	0	Photosystem	I	reaction	centre	subunit	IX	/	PsaJ
Nuc_sug_transp	PF04142.10	gi|379004507|ref|YP_005260179.1|	-	0.22	10.6	4.3	0.14	11.2	0.3	2.7	2	1	1	3	3	3	0	Nucleotide-sugar	transporter
UPF0104	PF03706.8	gi|379004508|ref|YP_005260180.1|	-	0.0003	20.1	0.1	0.00033	20.0	0.1	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
Cytochrom_B_N	PF00033.14	gi|379004508|ref|YP_005260180.1|	-	0.00047	19.5	0.2	0.0006	19.2	0.1	1.1	1	0	0	1	1	1	1	Cytochrome	b(N-terminal)/b6/petB
MFS_1	PF07690.11	gi|379004508|ref|YP_005260180.1|	-	0.00062	18.5	0.1	0.00068	18.4	0.1	1.1	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
IncA	PF04156.9	gi|379004508|ref|YP_005260180.1|	-	0.0039	16.8	4.9	0.0065	16.0	3.4	1.3	1	1	0	1	1	1	1	IncA	protein
DUF2254	PF10011.4	gi|379004508|ref|YP_005260180.1|	-	0.0049	15.3	0.4	0.0073	14.8	0.0	1.4	1	1	0	2	2	2	1	Predicted	membrane	protein	(DUF2254)
Reticulon	PF02453.12	gi|379004508|ref|YP_005260180.1|	-	0.0077	15.8	0.1	0.0094	15.5	0.1	1.1	1	0	0	1	1	1	1	Reticulon
PIG-P	PF08510.7	gi|379004508|ref|YP_005260180.1|	-	0.022	14.4	0.0	0.026	14.1	0.0	1.2	1	0	0	1	1	1	0	PIG-P
Cytochrom_B_C	PF00032.12	gi|379004508|ref|YP_005260180.1|	-	0.032	14.4	0.5	0.041	14.1	0.4	1.1	1	0	0	1	1	1	0	Cytochrome	b(C-terminal)/b6/petD
DUF948	PF06103.6	gi|379004508|ref|YP_005260180.1|	-	0.045	13.5	1.5	0.048	13.5	0.1	1.7	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF4131	PF13567.1	gi|379004508|ref|YP_005260180.1|	-	0.046	13.1	0.1	0.053	12.9	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4131)
TRP	PF06011.7	gi|379004508|ref|YP_005260180.1|	-	0.051	12.1	1.0	0.054	12.0	0.7	1.1	1	0	0	1	1	1	0	Transient	receptor	potential	(TRP)	ion	channel
Topo-VIb_trans	PF09239.6	gi|379004508|ref|YP_005260180.1|	-	0.084	12.3	0.1	0.095	12.2	0.1	1.2	1	0	0	1	1	1	0	Topoisomerase	VI	B	subunit,	transducer
PalH	PF08733.5	gi|379004508|ref|YP_005260180.1|	-	0.11	11.2	0.4	0.12	11.1	0.3	1.2	1	0	0	1	1	1	0	PalH/RIM21
T2SM	PF04612.7	gi|379004508|ref|YP_005260180.1|	-	0.25	11.1	8.5	0.13	12.0	0.2	2.0	1	1	1	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
DUF3784	PF12650.2	gi|379004508|ref|YP_005260180.1|	-	0.6	10.0	4.5	0.82	9.6	3.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3784)
HemY_N	PF07219.8	gi|379004508|ref|YP_005260180.1|	-	2.7	7.5	5.7	4.1	7.0	4.0	1.4	1	1	0	1	1	1	0	HemY	protein	N-terminus
DUF3185	PF11381.3	gi|379004508|ref|YP_005260180.1|	-	3.1	7.6	8.1	3.1	7.6	1.9	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
OAD_gamma	PF04277.8	gi|379004508|ref|YP_005260180.1|	-	4.2	7.8	5.7	0.22	11.9	0.3	1.6	2	0	0	2	2	2	0	Oxaloacetate	decarboxylase,	gamma	chain
SdpI	PF13630.1	gi|379004508|ref|YP_005260180.1|	-	5.5	6.7	10.4	6.5	6.5	6.9	1.4	1	1	0	1	1	1	0	SdpI/YhfL	protein	family
DUF2208	PF09973.4	gi|379004510|ref|YP_005260182.1|	-	9.3e-82	273.7	7.1	1e-81	273.5	5.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
DUF4131	PF13567.1	gi|379004510|ref|YP_005260182.1|	-	0.12	11.7	0.6	0.97	8.8	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF2207	PF09972.4	gi|379004510|ref|YP_005260182.1|	-	0.68	8.4	12.8	0.19	10.3	0.4	2.5	2	1	1	3	3	3	0	Predicted	membrane	protein	(DUF2207)
Fig1	PF12351.3	gi|379004510|ref|YP_005260182.1|	-	1.3	8.8	4.3	0.66	9.8	0.0	2.0	1	1	1	2	2	2	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
YniB	PF14002.1	gi|379004510|ref|YP_005260182.1|	-	2.3	7.6	5.9	15	5.0	4.1	2.1	1	1	0	1	1	1	0	YniB-like	protein
Ribosomal_60s	PF00428.14	gi|379004511|ref|YP_005260183.1|	-	1.9e-16	60.2	19.1	2.3e-16	59.9	13.3	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
DUF1631	PF07793.6	gi|379004511|ref|YP_005260183.1|	-	0.57	8.2	3.9	0.64	8.0	2.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1631)
Ribosomal_L38e	PF01781.13	gi|379004512|ref|YP_005260184.1|	-	5e-05	22.9	0.1	5.5e-05	22.8	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	L38e	protein	family
NIL	PF09383.5	gi|379004512|ref|YP_005260184.1|	-	0.099	12.2	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	NIL	domain
Cob_adeno_trans	PF01923.13	gi|379004513|ref|YP_005260185.1|	-	1.6e-23	83.2	0.0	1.8e-23	83.1	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
DUF2108	PF09881.4	gi|379004513|ref|YP_005260185.1|	-	0.021	14.6	0.0	0.049	13.4	0.0	1.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2108)
PEP_mutase	PF13714.1	gi|379004514|ref|YP_005260186.1|	-	2.5e-63	213.4	1.9	2.9e-63	213.2	1.3	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|379004514|ref|YP_005260186.1|	-	4.9e-16	58.0	2.6	1.5e-15	56.4	0.5	2.4	1	1	2	3	3	3	1	Isocitrate	lyase	family
MmgE_PrpD	PF03972.9	gi|379004515|ref|YP_005260187.1|	-	1.1e-126	422.5	0.0	1.4e-126	422.3	0.0	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
Pyr_redox_2	PF07992.9	gi|379004522|ref|YP_005260194.1|	-	1.6e-27	96.7	0.0	3.1e-27	95.7	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379004522|ref|YP_005260194.1|	-	4.2e-13	48.9	6.3	1.5e-06	27.3	0.6	3.1	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379004522|ref|YP_005260194.1|	-	9.4e-11	42.1	0.1	2.8e-07	30.7	0.0	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004522|ref|YP_005260194.1|	-	1.5e-09	37.2	7.0	2.5e-07	29.9	1.2	3.7	1	1	2	4	4	4	1	FAD	binding	domain
GIDA	PF01134.17	gi|379004522|ref|YP_005260194.1|	-	4.9e-08	32.2	4.9	2.7e-05	23.2	0.4	3.1	2	1	1	3	3	3	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|379004522|ref|YP_005260194.1|	-	3.4e-06	26.3	0.1	7.4e-06	25.2	0.1	1.5	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.1	gi|379004522|ref|YP_005260194.1|	-	1.5e-05	24.9	0.1	2.9e-05	23.9	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|379004522|ref|YP_005260194.1|	-	1.5e-05	24.2	0.1	1.5e-05	24.2	0.1	2.1	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379004522|ref|YP_005260194.1|	-	1.6e-05	23.6	0.6	0.0019	16.7	0.1	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.7	gi|379004522|ref|YP_005260194.1|	-	0.00031	19.7	0.9	0.03	13.2	0.3	2.4	1	1	1	2	2	2	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.22	gi|379004522|ref|YP_005260194.1|	-	0.00037	20.8	2.4	0.028	14.7	0.9	3.0	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379004522|ref|YP_005260194.1|	-	0.0012	18.6	4.4	0.064	13.0	0.1	2.9	3	0	0	3	3	3	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.14	gi|379004522|ref|YP_005260194.1|	-	0.004	16.2	0.5	0.011	14.8	0.1	1.8	2	0	0	2	2	2	1	FAD	binding	domain
K_oxygenase	PF13434.1	gi|379004522|ref|YP_005260194.1|	-	0.006	15.5	0.5	8.1	5.2	0.0	3.0	3	0	0	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Ribosomal_S19	PF00203.16	gi|379004526|ref|YP_005260198.1|	-	1.1e-28	98.6	0.1	1.6e-28	98.0	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	S19
Metal_resist	PF13801.1	gi|379004526|ref|YP_005260198.1|	-	0.11	12.4	0.2	0.16	11.9	0.1	1.2	1	0	0	1	1	1	0	Heavy-metal	resistance
Ribosomal_S17	PF00366.15	gi|379004527|ref|YP_005260199.1|	-	7.8e-19	67.4	2.5	1.2e-18	66.9	1.7	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S17
Peptidase_M11	PF05548.6	gi|379004527|ref|YP_005260199.1|	-	0.061	12.2	0.1	0.083	11.8	0.1	1.1	1	0	0	1	1	1	0	Gametolysin	peptidase	M11
ERCC4	PF02732.10	gi|379004528|ref|YP_005260200.1|	-	2.7e-20	72.5	0.0	3.8e-20	72.0	0.0	1.2	1	0	0	1	1	1	1	ERCC4	domain
HHH_5	PF14520.1	gi|379004528|ref|YP_005260200.1|	-	0.0028	17.7	0.0	0.034	14.3	0.0	2.4	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|379004528|ref|YP_005260200.1|	-	0.0037	16.8	0.0	0.0083	15.7	0.0	1.6	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|379004528|ref|YP_005260200.1|	-	0.07	13.3	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
IMS_HHH	PF11798.3	gi|379004528|ref|YP_005260200.1|	-	0.12	12.5	0.0	0.28	11.3	0.0	1.7	1	0	0	1	1	1	0	IMS	family	HHH	motif
TAT_signal	PF10518.4	gi|379004529|ref|YP_005260201.1|	-	1.7	8.8	9.9	0.31	11.1	3.5	2.2	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Ribosomal_L22	PF00237.14	gi|379004530|ref|YP_005260202.1|	-	3.7e-30	103.9	0.1	4.7e-30	103.6	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Peptidase_M30	PF10460.4	gi|379004533|ref|YP_005260205.1|	-	0.018	13.9	0.9	0.025	13.4	0.6	1.1	1	0	0	1	1	1	0	Peptidase	M30
Ribosomal_S3_C	PF00189.15	gi|379004535|ref|YP_005260207.1|	-	2.5e-14	53.2	0.8	4.5e-14	52.4	0.5	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.12	gi|379004535|ref|YP_005260207.1|	-	3.3e-10	39.3	1.3	6.2e-10	38.5	0.5	1.8	2	0	0	2	2	2	1	KH	domain
KH_1	PF00013.24	gi|379004535|ref|YP_005260207.1|	-	0.015	14.9	1.0	0.029	13.9	0.7	1.5	1	0	0	1	1	1	0	KH	domain
Hexokinase_2	PF03727.11	gi|379004535|ref|YP_005260207.1|	-	0.02	14.1	0.0	0.026	13.7	0.0	1.1	1	0	0	1	1	1	0	Hexokinase
Ribosomal_L29	PF00831.18	gi|379004536|ref|YP_005260208.1|	-	7.6e-20	70.3	3.8	9.5e-20	70.0	2.6	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
DUF2299	PF10061.4	gi|379004536|ref|YP_005260208.1|	-	0.0019	17.6	0.1	0.002	17.6	0.1	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
Enkurin	PF13864.1	gi|379004536|ref|YP_005260208.1|	-	0.022	14.9	3.1	0.026	14.7	2.2	1.3	1	1	0	1	1	1	0	Calmodulin-binding
Rad50_zn_hook	PF04423.9	gi|379004536|ref|YP_005260208.1|	-	0.032	13.7	1.4	0.064	12.7	0.3	1.9	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
DUF4355	PF14265.1	gi|379004536|ref|YP_005260208.1|	-	0.056	13.3	1.9	0.08	12.9	1.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4355)
DUF29	PF01724.11	gi|379004536|ref|YP_005260208.1|	-	0.13	12.0	0.3	0.17	11.7	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF29
HTH_38	PF13936.1	gi|379004536|ref|YP_005260208.1|	-	3.7	7.1	6.3	5.8	6.5	0.2	2.8	2	1	0	2	2	2	0	Helix-turn-helix	domain
UPF0086	PF01868.11	gi|379004537|ref|YP_005260209.1|	-	3e-06	26.7	0.0	3.1e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
CbiA	PF01656.18	gi|379004539|ref|YP_005260211.1|	-	2.7e-20	72.5	0.0	3.7e-20	72.1	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|379004539|ref|YP_005260211.1|	-	1.4e-14	54.3	0.0	5.7e-14	52.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|379004539|ref|YP_005260211.1|	-	1.5e-05	24.1	0.0	0.012	14.7	0.0	2.5	1	1	0	2	2	2	2	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|379004539|ref|YP_005260211.1|	-	6.4e-05	22.1	0.4	0.00012	21.2	0.3	1.5	1	1	0	1	1	1	1	Anion-transporting	ATPase
Fer4_NifH	PF00142.13	gi|379004539|ref|YP_005260211.1|	-	0.0013	18.0	0.0	0.002	17.3	0.0	1.2	1	0	0	1	1	1	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
VirC1	PF07015.6	gi|379004539|ref|YP_005260211.1|	-	0.0037	16.3	0.1	0.019	14.0	0.1	1.9	2	0	0	2	2	2	1	VirC1	protein
YhjQ	PF06564.7	gi|379004539|ref|YP_005260211.1|	-	0.0055	16.0	0.1	0.059	12.7	0.1	2.1	1	1	0	1	1	1	1	YhjQ	protein
AAA_25	PF13481.1	gi|379004539|ref|YP_005260211.1|	-	0.045	13.1	0.2	0.1	11.9	0.1	1.6	2	0	0	2	2	2	0	AAA	domain
MTHFR	PF02219.12	gi|379004540|ref|YP_005260212.1|	-	0.0017	17.5	0.0	0.0023	17.0	0.0	1.3	1	0	0	1	1	1	1	Methylenetetrahydrofolate	reductase
V_ATPase_I	PF01496.14	gi|379004541|ref|YP_005260213.1|	-	3.3e-30	104.6	25.2	1.3e-18	66.3	7.8	3.8	1	1	3	4	4	4	3	V-type	ATPase	116kDa	subunit	family
Pterin_bind	PF00809.17	gi|379004541|ref|YP_005260213.1|	-	0.061	12.6	0.1	0.17	11.2	0.0	1.7	1	0	0	1	1	1	0	Pterin	binding	enzyme
Matrilin_ccoil	PF10393.4	gi|379004541|ref|YP_005260213.1|	-	0.24	10.8	1.1	2	7.8	0.1	2.8	2	0	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
FliJ	PF02050.11	gi|379004541|ref|YP_005260213.1|	-	1.7	8.7	7.0	20	5.2	0.0	3.7	3	1	0	3	3	3	0	Flagellar	FliJ	protein
CCDC-167	PF15188.1	gi|379004541|ref|YP_005260213.1|	-	2.3	8.2	7.6	4.5	7.2	0.2	4.0	4	0	0	4	4	4	0	Coiled-coil	domain-containing	protein	167
DUF4200	PF13863.1	gi|379004541|ref|YP_005260213.1|	-	3.4	7.6	6.0	9.5	6.1	0.0	3.3	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF4200)
Prefoldin_2	PF01920.15	gi|379004541|ref|YP_005260213.1|	-	5.7	6.7	9.5	27	4.5	0.1	4.2	5	0	0	5	5	5	0	Prefoldin	subunit
H_PPase	PF03030.11	gi|379004542|ref|YP_005260214.1|	-	7.2e-238	791.2	45.5	8.3e-238	791.0	31.5	1.0	1	0	0	1	1	1	1	Inorganic	H+	pyrophosphatase
DUF4118	PF13493.1	gi|379004543|ref|YP_005260215.1|	-	0.085	13.0	1.7	0.1	12.8	1.2	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4118)
DUF973	PF06157.6	gi|379004545|ref|YP_005260217.1|	-	0.31	9.9	9.8	0.5	9.2	6.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF805	PF05656.9	gi|379004545|ref|YP_005260217.1|	-	0.36	10.6	6.8	0.077	12.8	1.7	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF805)
ZYG-11_interact	PF05884.7	gi|379004545|ref|YP_005260217.1|	-	4.3	6.3	9.2	4.2	6.3	4.8	1.9	2	0	0	2	2	2	0	Interactor	of	ZYG-11
HTH_45	PF14947.1	gi|379004547|ref|YP_005260219.1|	-	3.1e-13	49.3	0.0	3.5e-13	49.1	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HemN_C	PF06969.11	gi|379004547|ref|YP_005260219.1|	-	0.0008	19.4	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	HemN	C-terminal	domain
TrmB	PF01978.14	gi|379004547|ref|YP_005260219.1|	-	0.0025	17.4	0.0	0.0031	17.1	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
DUF4364	PF14277.1	gi|379004547|ref|YP_005260219.1|	-	0.0032	17.1	0.0	0.0039	16.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_27	PF13463.1	gi|379004547|ref|YP_005260219.1|	-	0.015	15.5	0.0	0.019	15.2	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GTP_EFTU	PF00009.22	gi|379004549|ref|YP_005260221.1|	-	7.4e-26	90.7	0.0	3.9e-25	88.3	0.0	1.9	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D2	PF03144.20	gi|379004549|ref|YP_005260221.1|	-	7.5e-09	35.5	0.2	4.7e-08	33.0	0.1	2.5	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D3	PF03143.12	gi|379004549|ref|YP_005260221.1|	-	1.9e-07	31.1	0.0	5.2e-07	29.7	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
PduV-EutP	PF10662.4	gi|379004549|ref|YP_005260221.1|	-	3.1e-05	23.4	0.1	0.17	11.4	0.0	3.2	2	1	1	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
GTP_EFTU_D4	PF14578.1	gi|379004549|ref|YP_005260221.1|	-	0.00036	20.1	0.3	0.0011	18.5	0.2	1.9	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|379004549|ref|YP_005260221.1|	-	0.0045	16.9	0.0	0.012	15.5	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
CbiJ	PF02571.9	gi|379004549|ref|YP_005260221.1|	-	0.031	13.5	0.0	0.059	12.6	0.0	1.4	1	0	0	1	1	1	0	Precorrin-6x	reductase	CbiJ/CobK
Cas_Cas4	PF01930.12	gi|379004550|ref|YP_005260222.1|	-	3.4e-21	75.8	0.0	5.2e-21	75.2	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|379004550|ref|YP_005260222.1|	-	1.3e-10	41.1	2.9	0.00012	21.6	0.0	2.9	1	1	1	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
PDDEXK_3	PF13366.1	gi|379004550|ref|YP_005260222.1|	-	4.3e-05	23.5	0.3	0.00014	21.8	0.1	1.8	1	1	1	2	2	2	1	PD-(D/E)XK	nuclease	superfamily
HSDR_N_2	PF13588.1	gi|379004550|ref|YP_005260222.1|	-	0.00038	20.2	0.0	0.00062	19.5	0.0	1.3	1	0	0	1	1	1	1	Type	I	restriction	enzyme	R	protein	N	terminus	(HSDR_N)
Phage_stabilise	PF11134.3	gi|379004550|ref|YP_005260222.1|	-	0.085	11.4	0.0	0.12	10.8	0.0	1.2	1	0	0	1	1	1	0	Phage	stabilisation	protein
CCG	PF02754.11	gi|379004551|ref|YP_005260223.1|	-	9.8e-27	92.7	0.1	8.3e-13	48.1	0.0	2.8	3	0	0	3	3	3	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|379004551|ref|YP_005260223.1|	-	1.3e-08	34.7	4.4	1.3e-08	34.7	3.1	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004551|ref|YP_005260223.1|	-	2.8e-06	27.4	6.9	0.00028	21.0	0.2	3.1	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004551|ref|YP_005260223.1|	-	0.00038	20.7	6.4	0.0083	16.4	5.4	2.4	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004551|ref|YP_005260223.1|	-	0.0014	18.4	12.1	0.02	14.6	8.6	2.5	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004551|ref|YP_005260223.1|	-	0.003	17.9	4.9	0.029	14.7	0.2	3.1	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004551|ref|YP_005260223.1|	-	0.0038	17.0	2.3	0.0038	17.0	1.6	2.9	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004551|ref|YP_005260223.1|	-	0.0039	17.5	12.8	0.01	16.1	2.3	2.9	3	1	2	5	5	4	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004551|ref|YP_005260223.1|	-	0.006	17.2	4.1	0.019	15.7	2.8	1.9	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|379004551|ref|YP_005260223.1|	-	0.013	15.8	2.4	0.013	15.8	1.7	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379004551|ref|YP_005260223.1|	-	0.013	15.0	4.7	0.013	15.0	3.3	3.0	3	0	0	3	3	2	0	4Fe-4S	binding	domain
NAD_binding_5	PF07994.7	gi|379004552|ref|YP_005260224.1|	-	4.7e-47	160.8	0.0	1.7e-46	159.0	0.0	1.7	1	1	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|379004552|ref|YP_005260224.1|	-	8.3e-22	77.1	0.0	1.4e-21	76.3	0.0	1.4	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Lipase_GDSL_2	PF13472.1	gi|379004552|ref|YP_005260224.1|	-	0.016	15.3	0.0	0.027	14.5	0.0	1.3	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
PadR	PF03551.9	gi|379004553|ref|YP_005260225.1|	-	5.1e-07	29.3	0.2	6.7e-07	28.9	0.1	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
Penicillinase_R	PF03965.11	gi|379004553|ref|YP_005260225.1|	-	0.00063	19.8	0.0	0.00072	19.6	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
PaaX	PF07848.7	gi|379004553|ref|YP_005260225.1|	-	0.018	15.0	0.0	0.031	14.2	0.0	1.5	1	0	0	1	1	1	0	PaaX-like	protein
MobB	PF03205.9	gi|379004554|ref|YP_005260226.1|	-	1e-18	67.3	0.1	1.3e-18	67.0	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CbiA	PF01656.18	gi|379004554|ref|YP_005260226.1|	-	6.5e-05	22.4	0.0	9.3e-05	21.9	0.0	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_35	PF14516.1	gi|379004554|ref|YP_005260226.1|	-	0.00012	20.8	0.0	0.00014	20.6	0.0	1.1	1	0	0	1	1	1	1	AAA-like	domain
NTPase_1	PF03266.10	gi|379004554|ref|YP_005260226.1|	-	0.0011	18.6	0.1	0.0018	18.0	0.1	1.3	1	0	0	1	1	1	1	NTPase
Arch_ATPase	PF01637.13	gi|379004554|ref|YP_005260226.1|	-	0.0081	15.8	0.0	0.0088	15.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|379004554|ref|YP_005260226.1|	-	0.0085	16.0	0.0	0.0085	16.0	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
KaiC	PF06745.8	gi|379004554|ref|YP_005260226.1|	-	0.02	14.0	0.0	0.026	13.6	0.0	1.3	1	0	0	1	1	1	0	KaiC
ArgK	PF03308.11	gi|379004554|ref|YP_005260226.1|	-	0.027	13.2	0.0	0.033	12.9	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_14	PF13173.1	gi|379004554|ref|YP_005260226.1|	-	0.049	13.5	0.0	0.067	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
APS_kinase	PF01583.15	gi|379004554|ref|YP_005260226.1|	-	0.081	12.5	0.1	0.14	11.8	0.1	1.3	1	0	0	1	1	1	0	Adenylylsulphate	kinase
HEM4	PF02602.10	gi|379004554|ref|YP_005260226.1|	-	0.093	11.9	0.0	0.17	11.1	0.0	1.3	1	0	0	1	1	1	0	Uroporphyrinogen-III	synthase	HemD
AAA_22	PF13401.1	gi|379004554|ref|YP_005260226.1|	-	0.1	12.7	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379004554|ref|YP_005260226.1|	-	0.12	12.3	0.2	0.28	11.1	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
L27_2	PF09045.5	gi|379004554|ref|YP_005260226.1|	-	0.12	11.8	0.0	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	L27_2
AdoMet_dc	PF02675.10	gi|379004558|ref|YP_005260230.1|	-	7.5e-35	119.0	0.0	8.7e-35	118.8	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
SpoVIF	PF14069.1	gi|379004558|ref|YP_005260230.1|	-	0.052	13.2	0.0	0.077	12.7	0.0	1.3	1	0	0	1	1	1	0	Stage	VI	sporulation	protein	F
tRNA-Thr_ED	PF08915.6	gi|379004559|ref|YP_005260231.1|	-	2.1e-46	157.3	0.0	3.9e-46	156.4	0.0	1.5	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.15	gi|379004559|ref|YP_005260231.1|	-	1e-23	83.0	1.3	2.4e-23	81.8	0.9	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
tRNA-synt_2b	PF00587.20	gi|379004559|ref|YP_005260231.1|	-	8.6e-17	61.2	1.1	1.9e-16	60.1	0.3	1.8	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF2204	PF09970.4	gi|379004560|ref|YP_005260232.1|	-	9e-66	220.7	4.0	1e-65	220.6	2.8	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
NTP_transf_5	PF14907.1	gi|379004560|ref|YP_005260232.1|	-	2.8e-05	23.5	0.2	0.0085	15.4	0.0	2.1	1	1	1	2	2	2	2	Uncharacterised	nucleotidyltransferase
PGK	PF00162.14	gi|379004561|ref|YP_005260233.1|	-	2.9e-100	335.5	0.0	3.4e-100	335.2	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
Chaperone_III	PF07824.7	gi|379004561|ref|YP_005260233.1|	-	0.044	13.7	0.0	0.17	11.8	0.0	1.9	2	0	0	2	2	2	0	Type	III	secretion	chaperone	domain
Gp_dh_N	PF00044.19	gi|379004562|ref|YP_005260234.1|	-	1.2e-16	61.0	0.1	1.4e-15	57.5	0.1	2.4	2	1	0	2	2	2	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
Gp_dh_C	PF02800.15	gi|379004562|ref|YP_005260234.1|	-	1.2e-14	54.0	0.0	1.7e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
DapB_N	PF01113.15	gi|379004562|ref|YP_005260234.1|	-	2.2e-09	37.3	0.1	4.4e-09	36.2	0.1	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
2-Hacid_dh_C	PF02826.14	gi|379004562|ref|YP_005260234.1|	-	0.00031	19.9	2.5	0.0055	15.8	0.6	2.8	2	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|379004562|ref|YP_005260234.1|	-	0.0026	18.2	0.9	0.0046	17.4	0.0	1.9	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
3HCDH_N	PF02737.13	gi|379004562|ref|YP_005260234.1|	-	0.0033	17.0	0.4	0.0078	15.8	0.3	1.6	1	1	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379004562|ref|YP_005260234.1|	-	0.0059	17.0	1.0	0.039	14.3	0.3	2.6	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ThiF	PF00899.16	gi|379004562|ref|YP_005260234.1|	-	0.0089	15.8	0.5	5.8	6.7	0.4	2.6	1	1	1	2	2	2	2	ThiF	family
NAD_binding_2	PF03446.10	gi|379004562|ref|YP_005260234.1|	-	0.0097	15.7	0.3	0.21	11.4	0.2	2.4	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|379004562|ref|YP_005260234.1|	-	0.012	15.4	0.2	0.034	13.9	0.1	1.8	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Saccharop_dh	PF03435.13	gi|379004562|ref|YP_005260234.1|	-	0.057	12.3	0.1	0.095	11.6	0.1	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
NAD_binding_3	PF03447.11	gi|379004562|ref|YP_005260234.1|	-	0.067	13.5	0.0	0.21	11.9	0.0	1.9	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
Usp	PF00582.21	gi|379004563|ref|YP_005260235.1|	-	3.4e-14	53.2	0.0	4e-14	52.9	0.0	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Pilus_CpaD	PF09476.5	gi|379004563|ref|YP_005260235.1|	-	0.0091	15.4	0.0	0.012	15.1	0.0	1.2	1	0	0	1	1	1	1	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
TIR_2	PF13676.1	gi|379004563|ref|YP_005260235.1|	-	0.012	15.7	0.0	0.018	15.1	0.0	1.4	1	0	0	1	1	1	0	TIR	domain
DUF434	PF04256.7	gi|379004563|ref|YP_005260235.1|	-	0.035	13.4	1.1	0.35	10.2	0.3	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF434)
RTC	PF01137.16	gi|379004563|ref|YP_005260235.1|	-	0.13	10.9	0.0	0.18	10.5	0.0	1.2	1	0	0	1	1	1	0	RNA	3'-terminal	phosphate	cyclase
Glyco_hydro_1	PF00232.13	gi|379004564|ref|YP_005260236.1|	-	1.5e-24	86.0	0.8	8.2e-23	80.3	0.1	2.1	1	1	1	2	2	2	2	Glycosyl	hydrolase	family	1
Glyco_hydro_42	PF02449.10	gi|379004564|ref|YP_005260236.1|	-	6.7e-05	22.1	0.0	0.00014	21.1	0.0	1.4	1	0	0	1	1	1	1	Beta-galactosidase
Glyco_hydro_35	PF01301.14	gi|379004564|ref|YP_005260236.1|	-	7.7e-05	22.1	0.1	0.00013	21.4	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	35
Cellulase	PF00150.13	gi|379004564|ref|YP_005260236.1|	-	0.00024	20.4	0.0	0.013	14.7	0.0	2.1	2	0	0	2	2	2	2	Cellulase	(glycosyl	hydrolase	family	5)
UbiA	PF01040.13	gi|379004565|ref|YP_005260237.1|	-	9.8e-33	113.4	26.2	1.3e-32	113.0	18.1	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
HAD_2	PF13419.1	gi|379004566|ref|YP_005260238.1|	-	1.1e-15	58.2	0.0	3.6e-15	56.6	0.0	1.8	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379004566|ref|YP_005260238.1|	-	1.6e-05	25.1	0.0	2.6e-05	24.4	0.0	1.3	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379004566|ref|YP_005260238.1|	-	7.6e-05	23.2	0.1	0.00032	21.1	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|379004566|ref|YP_005260238.1|	-	0.0003	20.4	0.0	0.013	15.1	0.0	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HTH_AsnC-type	PF13404.1	gi|379004566|ref|YP_005260238.1|	-	0.0076	15.7	0.2	0.02	14.4	0.1	1.7	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
Hydrolase_6	PF13344.1	gi|379004566|ref|YP_005260238.1|	-	0.17	11.7	0.1	0.87	9.5	0.1	2.1	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF217	PF02697.9	gi|379004567|ref|YP_005260239.1|	-	0.011	16.0	0.5	0.16	12.2	0.1	2.3	2	1	0	2	2	2	0	Uncharacterized	ACR,	COG1753
Jag_N	PF14804.1	gi|379004567|ref|YP_005260239.1|	-	0.02	14.8	0.0	4.9	7.2	0.0	2.7	3	0	0	3	3	3	0	Jag	N-terminus
Frigida	PF07899.6	gi|379004567|ref|YP_005260239.1|	-	0.13	10.9	0.1	0.17	10.6	0.1	1.1	1	0	0	1	1	1	0	Frigida-like	protein
TctB	PF07331.6	gi|379004568|ref|YP_005260240.1|	-	0.0032	17.1	9.3	0.0051	16.4	6.5	1.2	1	0	0	1	1	1	1	Tripartite	tricarboxylate	transporter	TctB	family
ATP-synt_A	PF00119.15	gi|379004568|ref|YP_005260240.1|	-	0.12	11.8	4.4	0.31	10.5	3.0	1.7	1	1	0	1	1	1	0	ATP	synthase	A	chain
DUF3043	PF11241.3	gi|379004568|ref|YP_005260240.1|	-	0.16	11.5	3.2	0.17	11.4	0.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3043)
Herpes_UL43	PF05072.8	gi|379004568|ref|YP_005260240.1|	-	0.3	9.8	5.5	0.35	9.5	3.8	1.1	1	0	0	1	1	1	0	Herpesvirus	UL43	protein
Chromate_transp	PF02417.10	gi|379004568|ref|YP_005260240.1|	-	0.35	10.4	8.9	0.12	11.9	4.0	1.7	1	1	1	2	2	2	0	Chromate	transporter
Bax1-I	PF01027.15	gi|379004568|ref|YP_005260240.1|	-	0.45	10.0	17.6	1.4	8.4	2.3	2.0	1	1	1	2	2	2	0	Inhibitor	of	apoptosis-promoting	Bax1
Zip	PF02535.17	gi|379004568|ref|YP_005260240.1|	-	5.3	5.9	7.4	0.7	8.8	0.3	2.0	2	0	0	2	2	2	0	ZIP	Zinc	transporter
TM_helix	PF05552.7	gi|379004569|ref|YP_005260241.1|	-	5.8e-11	41.8	4.8	7.4e-10	38.3	1.2	3.1	3	0	0	3	3	3	2	Conserved	TM	helix
FtsX	PF02687.16	gi|379004569|ref|YP_005260241.1|	-	0.0066	16.2	3.8	0.01	15.5	2.6	1.3	1	0	0	1	1	1	1	FtsX-like	permease	family
DUF204	PF02659.10	gi|379004569|ref|YP_005260241.1|	-	0.026	14.6	9.9	0.056	13.5	0.2	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF
SseC	PF04888.7	gi|379004569|ref|YP_005260241.1|	-	0.075	12.3	0.9	0.11	11.8	0.7	1.2	1	0	0	1	1	1	0	Secretion	system	effector	C	(SseC)	like	family
DoxX	PF07681.7	gi|379004569|ref|YP_005260241.1|	-	0.092	13.1	0.3	0.092	13.1	0.2	1.8	2	0	0	2	2	2	0	DoxX
DUF4013	PF13197.1	gi|379004569|ref|YP_005260241.1|	-	0.13	11.5	9.6	0.34	10.2	6.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4013)
Pam17	PF08566.5	gi|379004569|ref|YP_005260241.1|	-	0.18	11.4	1.3	0.26	10.9	0.0	1.7	1	1	1	2	2	2	0	Mitochondrial	import	protein	Pam17
ABC2_membrane_3	PF12698.2	gi|379004569|ref|YP_005260241.1|	-	0.2	10.6	2.9	0.26	10.2	2.0	1.1	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Colicin_V	PF02674.11	gi|379004569|ref|YP_005260241.1|	-	0.91	9.3	10.3	12	5.7	6.4	2.1	1	1	1	2	2	2	0	Colicin	V	production	protein
DUF4282	PF14110.1	gi|379004569|ref|YP_005260241.1|	-	0.95	9.6	4.8	2.1	8.6	3.4	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
Wzz	PF02706.10	gi|379004569|ref|YP_005260241.1|	-	5.8	6.7	7.3	2.5	7.8	0.3	2.1	2	0	0	2	2	2	0	Chain	length	determinant	protein
Arch_ATPase	PF01637.13	gi|379004570|ref|YP_005260242.1|	-	1.8e-27	96.5	0.0	4.1e-27	95.4	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|379004570|ref|YP_005260242.1|	-	1.4e-13	50.8	0.0	3.8e-13	49.4	0.0	1.8	2	0	0	2	2	2	1	Archaea	bacterial	proteins	of	unknown	function
AAA_16	PF13191.1	gi|379004570|ref|YP_005260242.1|	-	5.4e-10	39.5	0.2	8.6e-06	25.8	0.0	2.3	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_14	PF13173.1	gi|379004570|ref|YP_005260242.1|	-	3.8e-07	30.0	0.0	7.8e-07	29.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004570|ref|YP_005260242.1|	-	4.9e-07	29.9	0.0	9.6e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
HTH_IclR	PF09339.5	gi|379004570|ref|YP_005260242.1|	-	2.1e-06	27.2	0.0	5.1e-06	25.9	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
AAA	PF00004.24	gi|379004570|ref|YP_005260242.1|	-	0.00079	19.6	0.0	0.0013	18.9	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrmB	PF01978.14	gi|379004570|ref|YP_005260242.1|	-	0.014	15.1	0.1	0.034	13.8	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379004570|ref|YP_005260242.1|	-	0.015	14.9	0.0	0.05	13.2	0.0	1.9	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.15	gi|379004570|ref|YP_005260242.1|	-	0.057	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Glyco_hydro_57	PF03065.10	gi|379004572|ref|YP_005260244.1|	-	3.8e-71	239.8	1.0	5.1e-71	239.4	0.7	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	57
DUF3302	PF11742.3	gi|379004572|ref|YP_005260244.1|	-	0.00093	18.9	1.7	0.0021	17.8	1.2	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3302)
Glyco_hydro_26	PF02156.10	gi|379004572|ref|YP_005260244.1|	-	0.017	14.6	0.9	0.039	13.4	0.6	1.5	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	26
Wzz	PF02706.10	gi|379004573|ref|YP_005260245.1|	-	0.2	11.4	2.4	0.26	11.1	1.7	1.1	1	0	0	1	1	1	0	Chain	length	determinant	protein
Peptidase_S9	PF00326.16	gi|379004574|ref|YP_005260246.1|	-	2.8e-50	170.5	0.0	3.9e-50	170.0	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.13	gi|379004574|ref|YP_005260246.1|	-	1.8e-09	37.3	0.0	2.3e-07	30.5	0.0	2.3	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_5	PF12695.2	gi|379004574|ref|YP_005260246.1|	-	9.1e-09	35.2	0.0	3.1e-08	33.4	0.0	1.9	2	0	0	2	2	2	1	Alpha/beta	hydrolase	family
PD40	PF07676.7	gi|379004574|ref|YP_005260246.1|	-	1.3e-07	31.1	0.2	0.55	9.9	0.0	3.8	3	0	0	3	3	3	3	WD40-like	Beta	Propeller	Repeat
Abhydrolase_3	PF07859.8	gi|379004574|ref|YP_005260246.1|	-	0.018	14.6	0.0	0.39	10.2	0.0	2.3	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
DPPIV_N	PF00930.16	gi|379004574|ref|YP_005260246.1|	-	0.02	13.5	0.0	1.8	7.0	0.0	2.6	2	1	0	3	3	3	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
AXE1	PF05448.7	gi|379004574|ref|YP_005260246.1|	-	0.035	12.6	0.1	0.45	8.9	0.1	2.2	1	1	0	1	1	1	0	Acetyl	xylan	esterase	(AXE1)
PhoPQ_related	PF10142.4	gi|379004574|ref|YP_005260246.1|	-	0.1	11.0	0.0	0.18	10.2	0.0	1.3	1	0	0	1	1	1	0	PhoPQ-activated	pathogenicity-related	protein
Peptidase_S9_N	PF02897.10	gi|379004574|ref|YP_005260246.1|	-	0.11	11.0	0.0	0.16	10.5	0.0	1.2	1	0	0	1	1	1	0	Prolyl	oligopeptidase,	N-terminal	beta-propeller	domain
TruB_C	PF09142.6	gi|379004574|ref|YP_005260246.1|	-	0.24	11.0	3.3	64	3.3	0.0	3.7	4	0	0	4	4	4	0	tRNA	Pseudouridine	synthase	II,	C	terminal
Asparaginase	PF00710.15	gi|379004575|ref|YP_005260247.1|	-	5.1e-85	285.0	0.0	6.1e-85	284.8	0.0	1.0	1	0	0	1	1	1	1	Asparaginase
DUF2064	PF09837.4	gi|379004575|ref|YP_005260247.1|	-	0.0064	16.1	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2064)
SM-ATX	PF14438.1	gi|379004575|ref|YP_005260247.1|	-	0.035	14.0	0.0	0.082	12.8	0.0	1.6	1	0	0	1	1	1	0	Ataxin	2	SM	domain
HD_3	PF13023.1	gi|379004576|ref|YP_005260248.1|	-	3.1e-09	36.7	0.1	5.2e-09	36.0	0.0	1.5	1	1	0	1	1	1	1	HD	domain
HD	PF01966.17	gi|379004576|ref|YP_005260248.1|	-	9e-06	25.7	0.3	1.4e-05	25.0	0.2	1.4	1	1	0	1	1	1	1	HD	domain
HDOD	PF08668.7	gi|379004576|ref|YP_005260248.1|	-	0.062	12.5	0.0	0.086	12.1	0.0	1.3	1	0	0	1	1	1	0	HDOD	domain
PP-binding	PF00550.20	gi|379004576|ref|YP_005260248.1|	-	0.11	12.8	0.1	0.26	11.5	0.1	1.6	1	0	0	1	1	1	0	Phosphopantetheine	attachment	site
zf-ZPR1	PF03367.8	gi|379004577|ref|YP_005260249.1|	-	6.3e-26	90.4	0.0	7.3e-26	90.2	0.0	1.0	1	0	0	1	1	1	1	ZPR1	zinc-finger	domain
zf-NADH-PPase	PF09297.6	gi|379004577|ref|YP_005260249.1|	-	0.011	15.2	4.0	1.5	8.4	0.8	2.4	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|379004577|ref|YP_005260249.1|	-	0.011	15.4	0.2	2.3	8.0	0.0	3.4	4	0	0	4	4	4	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.1	gi|379004577|ref|YP_005260249.1|	-	0.049	12.8	4.3	0.71	9.1	3.0	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
RRN7	PF11781.3	gi|379004577|ref|YP_005260249.1|	-	0.06	12.8	0.7	4.9	6.7	0.0	2.6	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DZR	PF12773.2	gi|379004577|ref|YP_005260249.1|	-	0.084	12.7	0.2	0.41	10.4	0.1	1.8	1	1	0	1	1	1	0	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.8	gi|379004577|ref|YP_005260249.1|	-	0.088	12.2	2.5	11	5.5	0.1	3.2	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zinc_ribbon_2	PF13240.1	gi|379004577|ref|YP_005260249.1|	-	0.094	12.2	1.5	5.3	6.6	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2072	PF09845.4	gi|379004577|ref|YP_005260249.1|	-	0.26	11.2	0.8	2.1	8.2	0.0	2.3	3	0	0	3	3	3	0	Zn-ribbon	containing	protein	(DUF2072)
zinc_ribbon_2	PF13240.1	gi|379004578|ref|YP_005260250.1|	-	0.0021	17.4	5.6	0.042	13.3	0.2	2.1	1	1	1	2	2	2	2	zinc-ribbon	domain
Mu-like_Com	PF10122.4	gi|379004578|ref|YP_005260250.1|	-	0.0024	16.8	0.9	0.0051	15.8	0.6	1.6	1	1	0	1	1	1	1	Mu-like	prophage	protein	Com
zf-ribbon_3	PF13248.1	gi|379004578|ref|YP_005260250.1|	-	0.012	14.7	0.5	0.14	11.4	0.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|379004578|ref|YP_005260250.1|	-	0.03	14.0	0.8	0.038	13.6	0.5	1.3	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
zinc_ribbon_5	PF13719.1	gi|379004578|ref|YP_005260250.1|	-	0.039	13.5	1.5	0.05	13.1	0.0	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379004578|ref|YP_005260250.1|	-	0.041	13.8	0.8	0.077	12.9	0.6	1.4	1	0	0	1	1	1	0	Zinc	ribbon	domain
TerY-C	PF15616.1	gi|379004578|ref|YP_005260250.1|	-	0.046	13.6	1.1	0.063	13.2	0.7	1.2	1	0	0	1	1	1	0	TerY-C	metal	binding	domain
zinc_ribbon_4	PF13717.1	gi|379004578|ref|YP_005260250.1|	-	0.087	12.5	0.1	0.087	12.5	0.0	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-CSL	PF05207.8	gi|379004578|ref|YP_005260250.1|	-	0.1	12.1	3.2	0.25	10.8	0.7	2.1	1	1	1	2	2	2	0	CSL	zinc	finger
zf-NADH-PPase	PF09297.6	gi|379004578|ref|YP_005260250.1|	-	0.12	11.9	0.1	0.35	10.4	0.0	1.9	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Methyltransf_23	PF13489.1	gi|379004579|ref|YP_005260251.1|	-	1.7e-08	34.3	0.0	3.1e-08	33.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379004579|ref|YP_005260251.1|	-	9.2e-05	22.0	0.0	0.00014	21.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379004579|ref|YP_005260251.1|	-	0.00021	21.7	0.0	0.00036	20.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379004579|ref|YP_005260251.1|	-	0.004	17.7	0.0	0.0073	16.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379004579|ref|YP_005260251.1|	-	0.0063	16.9	0.0	0.013	15.9	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379004579|ref|YP_005260251.1|	-	0.13	12.2	0.0	0.27	11.2	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0051	PF01458.12	gi|379004580|ref|YP_005260252.1|	-	3.5e-55	186.9	0.5	1e-54	185.4	0.2	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	family	(UPF0051)
UBA	PF00627.26	gi|379004580|ref|YP_005260252.1|	-	0.053	13.3	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	UBA/TS-N	domain
RimK	PF08443.6	gi|379004583|ref|YP_005260255.1|	-	4.2e-38	130.7	0.0	5.6e-38	130.3	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|379004583|ref|YP_005260255.1|	-	2.1e-13	49.8	0.0	3e-13	49.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379004583|ref|YP_005260255.1|	-	3.3e-13	49.7	0.0	5.5e-13	49.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|379004583|ref|YP_005260255.1|	-	4.9e-09	36.2	0.0	2.1e-08	34.2	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|379004583|ref|YP_005260255.1|	-	7.8e-07	28.1	0.0	2.1e-05	23.4	0.0	2.1	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
PPDK_N	PF01326.14	gi|379004583|ref|YP_005260255.1|	-	0.015	14.3	0.1	0.029	13.4	0.1	1.4	1	0	0	1	1	1	0	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
ATPgrasp_ST	PF14397.1	gi|379004583|ref|YP_005260255.1|	-	0.14	11.2	0.0	1.1	8.3	0.0	2.0	2	0	0	2	2	2	0	Sugar-transfer	associated	ATP-grasp
Trypsin	PF00089.21	gi|379004586|ref|YP_005260258.1|	-	0.012	15.1	0.0	0.013	15.0	0.0	1.1	1	0	0	1	1	1	0	Trypsin
NTP_transf_2	PF01909.18	gi|379004588|ref|YP_005260260.1|	-	1e-12	48.2	0.0	1.4e-12	47.7	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|379004588|ref|YP_005260260.1|	-	0.00028	20.8	0.0	0.00033	20.6	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
DUF294	PF03445.8	gi|379004588|ref|YP_005260260.1|	-	0.074	12.6	0.0	0.095	12.3	0.0	1.2	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|379004589|ref|YP_005260261.1|	-	6.1e-27	93.8	0.8	7.2e-27	93.6	0.6	1.1	1	0	0	1	1	1	1	HEPN	domain
TPR_11	PF13414.1	gi|379004589|ref|YP_005260261.1|	-	0.0017	17.9	0.2	0.0032	17.0	0.1	1.5	1	0	0	1	1	1	1	TPR	repeat
DUF4398	PF14346.1	gi|379004589|ref|YP_005260261.1|	-	0.018	15.1	0.2	0.048	13.7	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
TPR_2	PF07719.12	gi|379004589|ref|YP_005260261.1|	-	0.028	14.3	0.9	0.028	14.3	0.6	2.0	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|379004589|ref|YP_005260261.1|	-	0.033	14.1	0.4	0.12	12.3	0.2	1.9	1	1	0	1	1	1	0	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|379004589|ref|YP_005260261.1|	-	0.18	11.4	0.3	0.18	11.4	0.2	2.3	3	0	0	3	3	3	0	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|379004589|ref|YP_005260261.1|	-	0.3	10.9	2.4	0.36	10.7	0.2	2.3	2	1	0	2	2	2	0	Tetratricopeptide	repeat
RNase_P_p30	PF01876.11	gi|379004591|ref|YP_005260263.1|	-	0.03	13.5	0.0	0.086	12.0	0.0	1.7	1	1	0	1	1	1	0	RNase	P	subunit	p30
RNA_binding	PF01877.12	gi|379004592|ref|YP_005260264.1|	-	1.2e-23	83.3	0.0	2.5e-23	82.3	0.0	1.5	1	1	0	1	1	1	1	RNA	binding
Ribosomal_L15e	PF00827.12	gi|379004593|ref|YP_005260265.1|	-	9.6e-54	181.8	5.6	1.1e-53	181.5	3.9	1.0	1	0	0	1	1	1	1	Ribosomal	L15
Thy1	PF02511.10	gi|379004595|ref|YP_005260267.1|	-	2.3e-39	134.7	0.8	3.9e-39	133.9	0.5	1.3	1	1	0	1	1	1	1	Thymidylate	synthase	complementing	protein
Glyco_tranf_2_3	PF13641.1	gi|379004596|ref|YP_005260268.1|	-	4.4e-25	88.8	0.0	9.2e-25	87.7	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|379004596|ref|YP_005260268.1|	-	2.5e-19	69.5	0.0	3.9e-19	68.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|379004596|ref|YP_005260268.1|	-	1.3e-18	67.4	0.4	1.3e-18	67.4	0.3	2.1	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|379004596|ref|YP_005260268.1|	-	1.2e-08	34.3	0.0	3.2e-08	33.0	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|379004596|ref|YP_005260268.1|	-	9.6e-08	31.4	0.0	1.7e-07	30.5	0.0	1.5	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
RNA_pol_Rpb4	PF03874.11	gi|379004596|ref|YP_005260268.1|	-	0.17	11.9	0.0	0.29	11.1	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	Rpb4
tRNA-synt_2	PF00152.15	gi|379004597|ref|YP_005260269.1|	-	1.2e-87	293.8	0.0	1.5e-87	293.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|379004597|ref|YP_005260269.1|	-	5.1e-09	35.8	0.0	1e-08	34.8	0.0	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|379004597|ref|YP_005260269.1|	-	8.8e-06	25.0	0.0	0.043	13.0	0.0	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
DUF3857	PF12969.2	gi|379004597|ref|YP_005260269.1|	-	0.073	12.6	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3857)
tRNA-synt_2b	PF00587.20	gi|379004597|ref|YP_005260269.1|	-	0.094	12.2	0.0	1.6	8.3	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
YXWGXW	PF12779.2	gi|379004599|ref|YP_005260271.1|	-	0.17	11.8	4.5	0.29	11.0	3.1	1.4	1	0	0	1	1	1	0	YXWGXW	repeat	(2	copies)
Vma12	PF11712.3	gi|379004601|ref|YP_005260273.1|	-	0.011	15.5	0.1	0.015	14.9	0.0	1.2	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
PRA1	PF03208.14	gi|379004603|ref|YP_005260275.1|	-	0.16	11.2	1.5	0.18	11.1	1.0	1.0	1	0	0	1	1	1	0	PRA1	family	protein
DUF3267	PF11667.3	gi|379004603|ref|YP_005260275.1|	-	1.4	9.1	5.3	11	6.2	2.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3267)
UbiD	PF01977.11	gi|379004604|ref|YP_005260276.1|	-	8.3e-134	446.0	0.0	9.7e-134	445.8	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
VIT1	PF01988.14	gi|379004605|ref|YP_005260277.1|	-	8.9e-18	64.5	27.0	5.6e-10	39.0	5.1	2.3	1	1	1	2	2	2	2	VIT	family
Rubrerythrin	PF02915.12	gi|379004605|ref|YP_005260277.1|	-	2.7e-05	24.5	0.1	0.0029	17.9	0.1	2.2	2	0	0	2	2	2	2	Rubrerythrin
HTH_5	PF01022.15	gi|379004606|ref|YP_005260278.1|	-	4.9e-07	29.3	0.0	8.6e-07	28.5	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|379004606|ref|YP_005260278.1|	-	8.2e-07	28.7	0.0	1.8e-06	27.6	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|379004606|ref|YP_005260278.1|	-	8.8e-05	21.8	0.0	0.00019	20.7	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
EAP30	PF04157.11	gi|379004606|ref|YP_005260278.1|	-	0.0035	16.5	0.0	0.0057	15.8	0.0	1.3	1	0	0	1	1	1	1	EAP30/Vps36	family
HTH_34	PF13601.1	gi|379004606|ref|YP_005260278.1|	-	0.004	17.1	0.0	0.012	15.6	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|379004606|ref|YP_005260278.1|	-	0.0075	15.9	0.1	0.012	15.2	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Ftsk_gamma	PF09397.5	gi|379004606|ref|YP_005260278.1|	-	0.012	15.3	1.3	0.023	14.4	0.9	1.4	1	0	0	1	1	1	0	Ftsk	gamma	domain
HTH_28	PF13518.1	gi|379004606|ref|YP_005260278.1|	-	0.014	15.3	1.2	0.027	14.4	0.3	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
FaeA	PF04703.7	gi|379004606|ref|YP_005260278.1|	-	0.02	15.0	0.1	0.05	13.7	0.1	1.7	1	0	0	1	1	1	0	FaeA-like	protein
HTH_IclR	PF09339.5	gi|379004606|ref|YP_005260278.1|	-	0.026	14.1	0.0	0.052	13.1	0.0	1.5	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|379004606|ref|YP_005260278.1|	-	0.036	13.7	0.1	0.073	12.7	0.1	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_AsnC-type	PF13404.1	gi|379004606|ref|YP_005260278.1|	-	0.05	13.1	0.0	0.14	11.7	0.0	1.7	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|379004606|ref|YP_005260278.1|	-	0.1	12.2	0.5	0.18	11.4	0.3	1.3	1	0	0	1	1	1	0	MarR	family
HTH_41	PF14502.1	gi|379004606|ref|YP_005260278.1|	-	0.11	12.1	0.1	0.21	11.2	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|379004606|ref|YP_005260278.1|	-	0.13	11.8	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
LAGLIDADG_3	PF14528.1	gi|379004607|ref|YP_005260279.1|	-	5.5e-22	77.7	0.1	1e-10	41.7	0.0	2.1	2	0	0	2	2	2	2	LAGLIDADG-like	domain
Hom_end	PF05204.9	gi|379004607|ref|YP_005260279.1|	-	6.1e-08	32.5	0.0	0.0021	17.9	0.0	2.1	2	0	0	2	2	2	2	Homing	endonuclease
LAGLIDADG_1	PF00961.14	gi|379004607|ref|YP_005260279.1|	-	1.7e-05	25.2	0.0	0.0085	16.6	0.0	2.7	2	1	0	2	2	2	1	LAGLIDADG	endonuclease
TIR_2	PF13676.1	gi|379004607|ref|YP_005260279.1|	-	0.0025	17.9	0.1	0.076	13.1	0.0	2.4	2	0	0	2	2	2	1	TIR	domain
Endonuc_subdom	PF09062.5	gi|379004607|ref|YP_005260279.1|	-	0.034	14.9	4.0	0.16	12.7	0.2	2.5	2	2	0	2	2	2	0	PI-PfuI	Endonuclease	subdomain
DUF1902	PF08972.6	gi|379004607|ref|YP_005260279.1|	-	0.054	13.0	0.1	0.12	11.9	0.1	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1902)
PepSY_2	PF13670.1	gi|379004607|ref|YP_005260279.1|	-	0.056	13.3	2.1	8.3	6.3	0.0	2.8	3	0	0	3	3	3	0	Peptidase	propeptide	and	YPEB	domain
WW	PF00397.21	gi|379004607|ref|YP_005260279.1|	-	1.6	8.7	6.2	0.17	11.8	0.6	2.2	2	0	0	2	2	2	0	WW	domain
PIN	PF01850.16	gi|379004611|ref|YP_005260283.1|	-	2.3e-06	27.9	0.1	3.1e-06	27.5	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
DUF217	PF02697.9	gi|379004612|ref|YP_005260284.1|	-	0.02	15.1	0.2	0.023	14.9	0.1	1.1	1	0	0	1	1	1	0	Uncharacterized	ACR,	COG1753
RHH_1	PF01402.16	gi|379004612|ref|YP_005260284.1|	-	1.8	8.6	5.8	1.8	8.5	0.8	2.5	1	1	1	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
PaREP1	PF05942.6	gi|379004614|ref|YP_005260286.1|	-	1.7e-26	92.3	7.7	1.7e-26	92.3	5.3	1.6	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004614|ref|YP_005260286.1|	-	2.3e-05	24.2	3.0	2.4e-05	24.2	1.0	1.8	2	0	0	2	2	2	1	HEPN	domain
Arc	PF03869.9	gi|379004614|ref|YP_005260286.1|	-	8.7e-05	22.0	0.4	0.00036	20.0	0.1	2.0	2	0	0	2	2	2	1	Arc-like	DNA	binding	domain
RHH_1	PF01402.16	gi|379004614|ref|YP_005260286.1|	-	0.0022	17.8	2.0	0.003	17.3	0.1	2.2	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
WHG	PF13305.1	gi|379004614|ref|YP_005260286.1|	-	0.11	13.0	0.1	0.32	11.6	0.0	1.9	2	0	0	2	2	2	0	WHG	domain
DUF4355	PF14265.1	gi|379004614|ref|YP_005260286.1|	-	0.17	11.8	2.1	2.2	8.2	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4355)
PSII_Pbs27	PF13326.1	gi|379004614|ref|YP_005260286.1|	-	0.38	10.7	4.7	0.64	9.9	1.2	2.0	1	1	1	2	2	2	0	Photosystem	II	Pbs27
PaRep2b	PF07775.6	gi|379004615|ref|YP_005260287.1|	-	3.6e-23	81.5	4.5	4.2e-19	68.1	3.1	2.0	1	1	1	2	2	2	2	PaRep2b	protein
Apolipoprotein	PF01442.13	gi|379004615|ref|YP_005260287.1|	-	0.031	13.7	1.0	0.052	13.0	0.7	1.3	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
PaRep2b	PF07775.6	gi|379004616|ref|YP_005260288.1|	-	4.2e-19	68.1	0.1	4.7e-19	67.9	0.1	1.0	1	0	0	1	1	1	1	PaRep2b	protein
NERD	PF08378.6	gi|379004617|ref|YP_005260289.1|	-	0.002	18.3	0.2	0.002	18.3	0.1	2.0	1	1	1	2	2	2	1	Nuclease-related	domain
DUF3883	PF13020.1	gi|379004617|ref|YP_005260289.1|	-	0.045	13.4	0.2	0.091	12.5	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3883)
DUF234	PF03008.9	gi|379004617|ref|YP_005260289.1|	-	0.083	13.0	2.4	0.21	11.7	0.7	2.0	1	1	1	2	2	2	0	Archaea	bacterial	proteins	of	unknown	function
DUF1399	PF07173.7	gi|379004617|ref|YP_005260289.1|	-	0.17	12.2	1.1	1.2	9.4	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1399)
Spore_GerAC	PF05504.6	gi|379004617|ref|YP_005260289.1|	-	2.4	7.9	5.9	13	5.5	0.0	2.3	1	1	1	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
PEP_mutase	PF13714.1	gi|379004619|ref|YP_005260291.1|	-	1.7e-44	151.8	0.1	2e-44	151.5	0.1	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|379004619|ref|YP_005260291.1|	-	2e-41	141.7	1.2	2e-20	72.5	0.1	3.0	2	1	1	3	3	3	3	Isocitrate	lyase	family
CBS	PF00571.23	gi|379004620|ref|YP_005260292.1|	-	1.2e-28	98.6	2.2	1.1e-14	53.9	0.3	2.2	2	0	0	2	2	2	2	CBS	domain
malic	PF00390.14	gi|379004620|ref|YP_005260292.1|	-	0.061	12.8	0.0	0.093	12.2	0.0	1.3	1	0	0	1	1	1	0	Malic	enzyme,	N-terminal	domain
Cas_csx3	PF09620.5	gi|379004620|ref|YP_005260292.1|	-	0.13	12.1	0.3	0.28	11.0	0.1	1.7	1	1	1	2	2	2	0	CRISPR-associated	protein	(Cas_csx3)
EIIA-man	PF03610.11	gi|379004622|ref|YP_005260294.1|	-	0.016	15.2	0.0	0.043	13.8	0.0	1.8	1	1	0	1	1	1	0	PTS	system	fructose	IIA	component
PaREP1	PF05942.6	gi|379004624|ref|YP_005260296.1|	-	7.2e-32	109.6	0.0	8.7e-32	109.3	0.0	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
F420_oxidored	PF03807.12	gi|379004624|ref|YP_005260296.1|	-	0.025	14.9	0.0	0.042	14.2	0.0	1.3	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
PaREP1	PF05942.6	gi|379004625|ref|YP_005260297.1|	-	7.5e-25	87.0	3.3	7.5e-25	87.0	2.3	1.5	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DUF4240	PF14024.1	gi|379004625|ref|YP_005260297.1|	-	0.00056	19.7	0.9	0.55	10.0	0.0	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF4240)
DUF357	PF04010.8	gi|379004625|ref|YP_005260297.1|	-	0.046	13.4	0.4	0.13	12.0	0.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF357)
Antitoxin-MazE	PF04014.13	gi|379004628|ref|YP_005260300.1|	-	0.028	14.1	0.6	0.028	14.1	0.4	1.0	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
HTH_45	PF14947.1	gi|379004630|ref|YP_005260302.1|	-	1.9e-13	49.9	1.8	2.2e-13	49.8	1.2	1.0	1	0	0	1	1	1	1	Winged	helix-turn-helix
Lsm_C	PF14894.1	gi|379004630|ref|YP_005260302.1|	-	0.058	12.8	0.0	0.085	12.3	0.0	1.3	1	0	0	1	1	1	0	Lsm	C-terminal
HemN_C	PF06969.11	gi|379004630|ref|YP_005260302.1|	-	0.071	13.1	0.0	0.088	12.8	0.0	1.3	1	0	0	1	1	1	0	HemN	C-terminal	domain
DUF4364	PF14277.1	gi|379004630|ref|YP_005260302.1|	-	0.08	12.5	0.1	0.086	12.4	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF2443	PF10398.4	gi|379004630|ref|YP_005260302.1|	-	0.11	12.2	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2443)
EF_assoc_1	PF08355.7	gi|379004630|ref|YP_005260302.1|	-	0.15	11.3	0.7	0.2	10.9	0.5	1.3	1	1	0	1	1	1	0	EF	hand	associated
DUF2592	PF10766.4	gi|379004633|ref|YP_005260305.1|	-	0.36	10.2	3.7	0.42	9.9	2.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2592)
Romo1	PF10247.4	gi|379004634|ref|YP_005260306.1|	-	0.027	14.6	0.8	0.072	13.2	0.5	1.8	1	0	0	1	1	1	0	Reactive	mitochondrial	oxygen	species	modulator	1
ABC2_membrane	PF01061.19	gi|379004635|ref|YP_005260307.1|	-	0.011	14.8	2.2	0.011	14.8	1.5	1.7	1	1	1	2	2	2	0	ABC-2	type	transporter
ABC2_membrane_6	PF06182.6	gi|379004635|ref|YP_005260307.1|	-	0.73	9.3	4.3	0.77	9.2	3.0	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Serpin	PF00079.15	gi|379004636|ref|YP_005260308.1|	-	5.3e-22	78.4	0.0	7.6e-22	77.9	0.0	1.2	1	0	0	1	1	1	1	Serpin	(serine	protease	inhibitor)
OATP	PF03137.15	gi|379004640|ref|YP_005260312.1|	-	0.022	12.8	2.3	0.035	12.1	1.6	1.3	1	0	0	1	1	1	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
XS	PF03468.9	gi|379004644|ref|YP_005260316.1|	-	0.0086	16.0	0.0	0.011	15.6	0.0	1.1	1	0	0	1	1	1	1	XS	domain
B3	PF02362.16	gi|379004644|ref|YP_005260316.1|	-	0.086	12.4	0.0	0.12	12.0	0.0	1.3	1	0	0	1	1	1	0	B3	DNA	binding	domain
DUF2678	PF10856.3	gi|379004645|ref|YP_005260317.1|	-	0.07	12.8	0.1	0.1	12.3	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2678)
DUF1516	PF07457.6	gi|379004645|ref|YP_005260317.1|	-	0.078	13.0	2.1	0.13	12.3	1.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1516)
IncA	PF04156.9	gi|379004645|ref|YP_005260317.1|	-	0.22	11.1	0.1	0.22	11.1	0.1	1.5	2	0	0	2	2	2	0	IncA	protein
DUF2269	PF10027.4	gi|379004645|ref|YP_005260317.1|	-	0.23	11.2	14.9	0.78	9.5	10.3	1.9	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
CopD	PF05425.8	gi|379004645|ref|YP_005260317.1|	-	0.24	11.6	13.1	0.028	14.6	5.0	2.0	1	1	1	2	2	2	0	Copper	resistance	protein	D
DUF308	PF03729.8	gi|379004645|ref|YP_005260317.1|	-	1.6	8.8	8.1	0.38	10.7	0.2	2.8	1	1	2	3	3	3	0	Short	repeat	of	unknown	function	(DUF308)
DUF3800	PF12686.2	gi|379004646|ref|YP_005260318.1|	-	0.0025	17.4	0.0	0.01	15.5	0.0	1.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF3800)
DSPc	PF00782.15	gi|379004647|ref|YP_005260319.1|	-	9.1e-13	47.9	0.0	1e-12	47.7	0.0	1.2	1	0	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
Y_phosphatase	PF00102.22	gi|379004647|ref|YP_005260319.1|	-	1.6e-06	27.6	0.0	1.8e-06	27.5	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
PTPlike_phytase	PF14566.1	gi|379004647|ref|YP_005260319.1|	-	3.8e-05	23.7	0.0	7.3e-05	22.8	0.0	1.6	2	1	0	2	2	2	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.1	gi|379004647|ref|YP_005260319.1|	-	0.00013	22.2	0.0	0.054	13.7	0.0	2.1	1	1	1	2	2	2	2	Tyrosine	phosphatase	family
CDKN3	PF05706.7	gi|379004647|ref|YP_005260319.1|	-	0.00053	19.4	0.0	0.00072	19.0	0.0	1.1	1	0	0	1	1	1	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
DsbD	PF02683.10	gi|379004648|ref|YP_005260320.1|	-	7.3e-14	51.8	22.0	1.9e-13	50.5	15.3	1.7	1	1	0	1	1	1	1	Cytochrome	C	biogenesis	protein	transmembrane	region
Thioredoxin_2	PF13098.1	gi|379004648|ref|YP_005260320.1|	-	4.1e-12	46.2	0.0	4.3e-11	43.0	0.0	2.1	2	0	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_7	PF13899.1	gi|379004648|ref|YP_005260320.1|	-	0.039	13.9	0.0	0.077	13.0	0.0	1.6	1	0	0	1	1	1	0	Thioredoxin-like
Lactamase_B	PF00753.22	gi|379004649|ref|YP_005260321.1|	-	1.3e-31	109.7	4.1	1.5e-31	109.5	2.8	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|379004649|ref|YP_005260321.1|	-	1.3e-05	24.8	0.0	1.9e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DAO	PF01266.19	gi|379004651|ref|YP_005260323.1|	-	2.2e-25	89.3	1.0	3.6e-17	62.3	0.2	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379004651|ref|YP_005260323.1|	-	0.00037	20.4	0.0	0.00069	19.5	0.0	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|379004651|ref|YP_005260323.1|	-	0.002	18.1	0.4	0.0095	15.9	0.2	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
RHH_1	PF01402.16	gi|379004652|ref|YP_005260324.1|	-	2.7e-08	33.3	0.0	3.5e-08	32.9	0.0	1.2	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|379004652|ref|YP_005260324.1|	-	0.0035	17.4	0.0	0.0038	17.3	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
DUF2191	PF09957.4	gi|379004652|ref|YP_005260324.1|	-	0.1	12.4	0.0	0.16	11.8	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
EamA	PF00892.15	gi|379004653|ref|YP_005260325.1|	-	5.8e-26	90.9	31.5	6.8e-14	52.0	7.1	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
UPF0546	PF10639.4	gi|379004653|ref|YP_005260325.1|	-	1.6e-06	27.9	5.5	0.00013	21.7	1.1	2.7	2	1	0	2	2	2	2	Uncharacterised	protein	family	UPF0546
EmrE	PF13536.1	gi|379004653|ref|YP_005260325.1|	-	1.9e-06	28.0	2.6	1.9e-06	28.0	1.8	3.6	1	1	3	4	4	4	1	Multidrug	resistance	efflux	transporter
Sec61_beta	PF03911.11	gi|379004653|ref|YP_005260325.1|	-	0.26	11.1	0.1	0.26	11.1	0.0	3.0	3	1	0	3	3	3	0	Sec61beta	family
ATP1G1_PLM_MAT8	PF02038.11	gi|379004653|ref|YP_005260325.1|	-	0.49	9.4	3.9	7.1	5.7	0.2	2.9	2	0	0	2	2	2	0	ATP1G1/PLM/MAT8	family
MttA_Hcf106	PF02416.11	gi|379004654|ref|YP_005260326.1|	-	1.2e-16	59.5	3.5	8.4e-16	56.8	0.3	2.6	3	0	0	3	3	3	1	mttA/Hcf106	family
Hom_end	PF05204.9	gi|379004654|ref|YP_005260326.1|	-	0.0029	17.5	0.2	0.0041	17.0	0.2	1.2	1	0	0	1	1	1	1	Homing	endonuclease
LYTB	PF02401.13	gi|379004654|ref|YP_005260326.1|	-	0.0083	15.0	0.1	0.0099	14.8	0.1	1.1	1	0	0	1	1	1	1	LytB	protein
CobN-Mg_chel	PF02514.11	gi|379004654|ref|YP_005260326.1|	-	0.024	12.0	0.1	0.026	11.9	0.1	1.0	1	0	0	1	1	1	0	CobN/Magnesium	Chelatase
Rho_N	PF07498.7	gi|379004654|ref|YP_005260326.1|	-	0.031	14.0	2.5	0.068	12.9	1.7	1.6	1	0	0	1	1	1	0	Rho	termination	factor,	N-terminal	domain
Tim54	PF11711.3	gi|379004654|ref|YP_005260326.1|	-	0.053	12.1	0.6	0.063	11.8	0.4	1.0	1	0	0	1	1	1	0	Inner	membrane	protein	import	complex	subunit	Tim54
OapA_N	PF08525.6	gi|379004654|ref|YP_005260326.1|	-	0.085	12.6	0.5	0.12	12.1	0.4	1.2	1	0	0	1	1	1	0	Opacity-associated	protein	A	N-terminal	motif
HHH_8	PF14716.1	gi|379004654|ref|YP_005260326.1|	-	0.1	12.7	0.3	0.18	12.0	0.2	1.6	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Neuromodulin_N	PF10580.4	gi|379004654|ref|YP_005260326.1|	-	0.28	10.8	2.8	0.48	10.1	1.9	1.3	1	0	0	1	1	1	0	Gap	junction	protein	N-terminal	region
GnsAB	PF08178.6	gi|379004654|ref|YP_005260326.1|	-	0.35	10.5	6.8	1.7	8.3	1.3	2.3	1	1	1	2	2	2	0	GnsA/GnsB	family
TatC	PF00902.13	gi|379004655|ref|YP_005260327.1|	-	1.6e-37	129.0	21.8	2.2e-37	128.5	15.1	1.2	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
MFS_1	PF07690.11	gi|379004658|ref|YP_005260330.1|	-	3.3e-32	111.5	55.6	3.3e-32	111.5	38.6	2.0	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|379004658|ref|YP_005260330.1|	-	8.9e-05	20.7	0.1	8.9e-05	20.7	0.0	1.8	2	0	0	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
AA_kinase	PF00696.23	gi|379004659|ref|YP_005260331.1|	-	1.2e-35	123.2	0.0	1.4e-35	123.0	0.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
tRNA-synt_His	PF13393.1	gi|379004660|ref|YP_005260332.1|	-	1.6e-68	231.0	0.2	2e-68	230.7	0.1	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|379004660|ref|YP_005260332.1|	-	7e-19	68.0	0.0	1.3e-18	67.1	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|379004660|ref|YP_005260332.1|	-	8e-13	48.1	0.9	2.3e-12	46.6	0.2	2.0	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2d	PF01409.15	gi|379004660|ref|YP_005260332.1|	-	2.5e-05	23.6	0.0	0.0011	18.2	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|379004660|ref|YP_005260332.1|	-	0.013	14.3	0.1	3.7	6.2	0.0	2.6	2	1	0	2	2	2	0	tRNA	synthetases	class	II	(D,	K	and	N)
Glyco_hydro_70	PF02324.11	gi|379004660|ref|YP_005260332.1|	-	0.17	9.6	0.0	0.29	8.8	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	70
Saccharop_dh	PF03435.13	gi|379004661|ref|YP_005260333.1|	-	1.5e-41	142.7	0.0	6.1e-40	137.3	0.0	2.0	1	1	0	2	2	2	2	Saccharopine	dehydrogenase
Semialdhyde_dh	PF01118.19	gi|379004661|ref|YP_005260333.1|	-	0.014	15.6	0.0	0.025	14.8	0.0	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Glycos_transf_2	PF00535.21	gi|379004662|ref|YP_005260334.1|	-	2.6e-31	108.5	0.0	3.9e-31	107.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
GtrA	PF04138.9	gi|379004662|ref|YP_005260334.1|	-	3.8e-18	65.5	12.6	6.2e-18	64.8	8.7	1.4	1	0	0	1	1	1	1	GtrA-like	protein
Glyco_tranf_2_3	PF13641.1	gi|379004662|ref|YP_005260334.1|	-	8.4e-16	58.4	2.6	2e-15	57.2	1.3	2.0	2	1	0	2	2	2	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_2	PF10111.4	gi|379004662|ref|YP_005260334.1|	-	1.1e-05	24.6	0.0	1.6e-05	24.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|379004662|ref|YP_005260334.1|	-	0.017	15.4	0.0	0.084	13.1	0.0	2.0	2	0	0	2	2	2	0	Glycosyl	transferase	family	2
KaiC	PF06745.8	gi|379004663|ref|YP_005260335.1|	-	1e-13	50.9	0.1	1.8e-08	33.8	0.0	2.5	2	0	0	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|379004663|ref|YP_005260335.1|	-	5.3e-06	25.9	0.0	1e-05	25.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004663|ref|YP_005260335.1|	-	4.2e-05	23.7	0.0	8.1e-05	22.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379004663|ref|YP_005260335.1|	-	0.00024	21.1	0.0	0.00046	20.2	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379004663|ref|YP_005260335.1|	-	0.00097	19.3	0.0	0.0018	18.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|379004663|ref|YP_005260335.1|	-	0.0028	17.4	0.4	0.0071	16.0	0.1	2.0	2	1	0	2	2	2	1	Archaeal	ATPase
SRP54	PF00448.17	gi|379004663|ref|YP_005260335.1|	-	0.0036	16.7	0.0	0.0058	16.0	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.1	gi|379004663|ref|YP_005260335.1|	-	0.0037	16.8	0.4	0.025	14.1	0.1	2.1	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379004663|ref|YP_005260335.1|	-	0.004	17.9	0.2	0.014	16.2	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|379004663|ref|YP_005260335.1|	-	0.014	14.8	0.0	0.14	11.5	0.0	2.1	1	1	0	2	2	2	0	AAA-like	domain
IstB_IS21	PF01695.12	gi|379004663|ref|YP_005260335.1|	-	0.017	14.5	0.0	0.059	12.7	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.7	gi|379004663|ref|YP_005260335.1|	-	0.023	14.3	0.1	0.12	12.0	0.0	2.0	1	1	0	1	1	1	0	NACHT	domain
RecA	PF00154.16	gi|379004663|ref|YP_005260335.1|	-	0.028	13.4	0.0	0.045	12.8	0.0	1.3	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
PhoH	PF02562.11	gi|379004663|ref|YP_005260335.1|	-	0.038	13.2	0.1	0.14	11.3	0.0	1.8	2	0	0	2	2	2	0	PhoH-like	protein
SecA_DEAD	PF07517.9	gi|379004663|ref|YP_005260335.1|	-	0.038	13.2	0.0	2.1	7.5	0.0	2.1	2	0	0	2	2	2	0	SecA	DEAD-like	domain
RNA_helicase	PF00910.17	gi|379004663|ref|YP_005260335.1|	-	0.051	13.7	0.0	0.11	12.6	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF258	PF03193.11	gi|379004663|ref|YP_005260335.1|	-	0.059	12.5	0.0	0.09	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|379004663|ref|YP_005260335.1|	-	0.085	12.6	0.0	0.24	11.1	0.0	1.7	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_30	PF13604.1	gi|379004663|ref|YP_005260335.1|	-	0.097	12.2	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2075	PF09848.4	gi|379004663|ref|YP_005260335.1|	-	0.11	11.4	0.0	0.33	9.8	0.0	1.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_14	PF13173.1	gi|379004663|ref|YP_005260335.1|	-	0.14	12.0	0.0	0.28	11.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
NDK	PF00334.14	gi|379004665|ref|YP_005260337.1|	-	7.9e-47	158.4	0.0	2.8e-26	91.9	0.0	2.0	2	0	0	2	2	2	2	Nucleoside	diphosphate	kinase
Oxidored_q1	PF00361.15	gi|379004666|ref|YP_005260338.1|	-	5.7e-23	81.5	18.6	5.2e-21	75.1	12.6	3.2	1	1	1	2	2	2	2	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1	PF00361.15	gi|379004667|ref|YP_005260339.1|	-	6.4e-47	160.0	16.4	6.4e-47	160.0	11.3	3.4	4	0	0	4	4	4	2	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|379004667|ref|YP_005260339.1|	-	6.7e-05	22.3	3.2	0.0001	21.7	0.4	2.9	2	1	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|379004668|ref|YP_005260340.1|	-	7.4e-48	163.1	21.6	2.3e-47	161.5	15.0	1.9	1	0	0	1	1	1	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|379004668|ref|YP_005260340.1|	-	0.00052	19.5	2.3	0.0014	18.1	0.1	2.9	2	0	0	2	2	2	1	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q2	PF00420.19	gi|379004669|ref|YP_005260341.1|	-	1.5e-14	53.3	10.4	1.7e-14	53.1	7.2	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF2105	PF09878.4	gi|379004669|ref|YP_005260341.1|	-	0.028	13.9	6.7	0.031	13.8	4.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2105)
BCLP	PF12304.3	gi|379004669|ref|YP_005260341.1|	-	0.14	11.5	9.5	0.2	11.0	6.5	1.4	1	1	0	1	1	1	0	Beta-casein	like	protein
Herpes_UL43	PF05072.8	gi|379004669|ref|YP_005260341.1|	-	0.43	9.2	7.7	0.48	9.1	5.3	1.0	1	0	0	1	1	1	0	Herpesvirus	UL43	protein
DUF4418	PF14387.1	gi|379004669|ref|YP_005260341.1|	-	1.3	8.7	10.2	2.1	8.0	6.4	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4418)
PMP1_2	PF08114.6	gi|379004669|ref|YP_005260341.1|	-	6	6.4	11.5	1.5	8.3	0.3	2.7	1	1	2	3	3	3	0	ATPase	proteolipid	family
YtpI	PF14007.1	gi|379004669|ref|YP_005260341.1|	-	7.7	6.5	10.5	1.3	9.0	4.0	1.9	1	1	1	2	2	2	0	YtpI-like	protein
Oxidored_q3	PF00499.15	gi|379004670|ref|YP_005260342.1|	-	6.9e-07	29.1	16.7	1.6e-06	27.9	11.5	1.6	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Peptidase_U4	PF03419.8	gi|379004670|ref|YP_005260342.1|	-	0.17	10.9	14.6	0.19	10.7	10.1	1.0	1	0	0	1	1	1	0	Sporulation	factor	SpoIIGA
CLN6	PF15156.1	gi|379004670|ref|YP_005260342.1|	-	0.53	9.3	5.6	0.69	8.9	3.9	1.1	1	0	0	1	1	1	0	Ceroid-lipofuscinosis	neuronal	protein	6
Yip1	PF04893.12	gi|379004670|ref|YP_005260342.1|	-	7.4	6.0	27.2	13	5.2	18.8	1.4	1	1	0	1	1	1	0	Yip1	domain
Fer4	PF00037.22	gi|379004671|ref|YP_005260343.1|	-	6e-16	57.2	11.2	6.3e-08	31.9	0.9	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379004671|ref|YP_005260343.1|	-	3.7e-12	45.8	18.2	2.7e-08	33.4	7.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004671|ref|YP_005260343.1|	-	1.8e-11	43.3	14.1	8.8e-06	25.3	2.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004671|ref|YP_005260343.1|	-	5.4e-11	42.6	8.3	1.1e-10	41.7	5.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004671|ref|YP_005260343.1|	-	7.6e-11	42.1	19.1	1.3e-07	31.7	7.4	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004671|ref|YP_005260343.1|	-	6.4e-10	39.6	5.5	0.00024	21.7	1.0	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379004671|ref|YP_005260343.1|	-	9e-10	38.2	4.4	2.1e-05	24.2	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004671|ref|YP_005260343.1|	-	3.8e-08	32.7	12.8	5.7e-05	22.7	2.0	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379004671|ref|YP_005260343.1|	-	2.9e-07	30.7	2.6	0.012	15.9	0.2	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004671|ref|YP_005260343.1|	-	8.3e-07	28.8	13.7	0.0028	17.8	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379004671|ref|YP_005260343.1|	-	1.8e-06	27.8	7.7	0.0086	16.0	0.9	2.1	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379004671|ref|YP_005260343.1|	-	2.3e-05	24.6	15.8	0.0046	17.4	2.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|379004671|ref|YP_005260343.1|	-	0.0023	18.3	13.1	0.055	13.9	2.2	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379004671|ref|YP_005260343.1|	-	0.0036	17.8	6.2	1	9.9	1.2	2.5	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379004671|ref|YP_005260343.1|	-	0.088	13.2	13.5	0.42	11.0	2.3	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_20	PF14691.1	gi|379004671|ref|YP_005260343.1|	-	6.3	6.4	8.4	4.2	7.0	0.3	2.2	1	1	1	3	3	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
NADHdh	PF00146.16	gi|379004672|ref|YP_005260344.1|	-	4.4e-52	177.0	17.3	5.4e-52	176.7	12.0	1.0	1	0	0	1	1	1	1	NADH	dehydrogenase
Lig_chan	PF00060.21	gi|379004672|ref|YP_005260344.1|	-	0.4	10.3	4.5	0.49	10.1	0.6	2.7	2	1	0	2	2	2	0	Ligand-gated	ion	channel
PBP_like_2	PF12849.2	gi|379004673|ref|YP_005260345.1|	-	5.6e-07	29.3	0.2	6.9e-07	29.0	0.1	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|379004673|ref|YP_005260345.1|	-	0.0051	15.7	0.0	0.0071	15.3	0.0	1.2	1	0	0	1	1	1	1	PBP	superfamily	domain
SBP_bac_1	PF01547.20	gi|379004673|ref|YP_005260345.1|	-	0.019	14.6	0.0	0.025	14.3	0.0	1.2	1	0	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
LysR_substrate	PF03466.15	gi|379004673|ref|YP_005260345.1|	-	0.037	13.1	0.0	0.051	12.6	0.0	1.2	1	0	0	1	1	1	0	LysR	substrate	binding	domain
ODV-E18	PF10717.4	gi|379004673|ref|YP_005260345.1|	-	0.04	13.3	0.1	0.061	12.7	0.1	1.3	1	0	0	1	1	1	0	Occlusion-derived	virus	envelope	protein	ODV-E18
SBP_bac_11	PF13531.1	gi|379004673|ref|YP_005260345.1|	-	0.065	12.8	0.4	0.1	12.1	0.3	1.5	1	1	0	1	1	1	0	Bacterial	extracellular	solute-binding	protein
NMT1_2	PF13379.1	gi|379004673|ref|YP_005260345.1|	-	0.07	12.5	0.0	0.08	12.3	0.0	1.2	1	0	0	1	1	1	0	NMT1-like	family
Lactamase_B	PF00753.22	gi|379004674|ref|YP_005260346.1|	-	2.6e-18	66.3	5.1	4.9e-18	65.4	3.6	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|379004674|ref|YP_005260346.1|	-	4.3e-08	32.9	0.3	5.8e-08	32.5	0.2	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|379004674|ref|YP_005260346.1|	-	4.3e-06	26.5	0.0	7.7e-06	25.7	0.0	1.5	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
LPP	PF04728.8	gi|379004674|ref|YP_005260346.1|	-	0.17	11.7	0.2	0.27	11.0	0.1	1.3	1	0	0	1	1	1	0	Lipoprotein	leucine-zipper
Amidase	PF01425.16	gi|379004675|ref|YP_005260347.1|	-	1.1e-91	307.9	3.2	1.9e-91	307.1	2.2	1.3	1	1	0	1	1	1	1	Amidase
Fer2_BFD	PF04324.10	gi|379004675|ref|YP_005260347.1|	-	0.12	12.3	0.0	0.33	11.0	0.0	1.7	1	0	0	1	1	1	0	BFD-like	[2Fe-2S]	binding	domain
DUF4577	PF15145.1	gi|379004676|ref|YP_005260348.1|	-	0.13	12.1	0.1	0.13	12.1	0.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4577)
Translin	PF01997.11	gi|379004677|ref|YP_005260349.1|	-	4.8e-34	117.7	0.3	6.2e-34	117.3	0.2	1.1	1	0	0	1	1	1	1	Translin	family
EzrA	PF06160.7	gi|379004677|ref|YP_005260349.1|	-	0.0098	14.1	0.6	0.02	13.1	0.0	1.7	2	0	0	2	2	2	1	Septation	ring	formation	regulator,	EzrA
Presenilin	PF01080.12	gi|379004678|ref|YP_005260350.1|	-	0.95	8.2	26.0	0.096	11.4	3.1	2.2	2	0	0	2	2	2	0	Presenilin
Lycopene_cycl	PF05834.7	gi|379004680|ref|YP_005260352.1|	-	0.021	13.7	0.1	0.047	12.6	0.0	1.5	2	0	0	2	2	2	0	Lycopene	cyclase	protein
CBS	PF00571.23	gi|379004681|ref|YP_005260353.1|	-	4.3e-27	93.6	3.1	8.9e-15	54.2	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
PDH	PF02153.12	gi|379004681|ref|YP_005260353.1|	-	0.0019	17.1	0.1	0.0028	16.5	0.1	1.2	1	0	0	1	1	1	1	Prephenate	dehydrogenase
Phage_FRD3	PF05798.6	gi|379004682|ref|YP_005260354.1|	-	0.007	16.6	0.0	0.01	16.1	0.0	1.3	1	0	0	1	1	1	1	Bacteriophage	FRD3	protein
PHA_synth_III_E	PF09712.5	gi|379004682|ref|YP_005260354.1|	-	0.027	13.8	0.0	0.031	13.7	0.0	1.1	1	0	0	1	1	1	0	Poly(R)-hydroxyalkanoic	acid	synthase	subunit	(PHA_synth_III_E)
UPF0122	PF04297.9	gi|379004682|ref|YP_005260354.1|	-	0.067	13.2	0.3	0.11	12.5	0.2	1.6	1	1	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
DUF496	PF04363.7	gi|379004682|ref|YP_005260354.1|	-	0.087	12.6	0.4	0.13	12.0	0.2	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF496)
Cren7	PF11520.3	gi|379004683|ref|YP_005260355.1|	-	4.6e-27	93.4	1.7	4.9e-27	93.3	1.2	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
PaREP1	PF05942.6	gi|379004684|ref|YP_005260356.1|	-	0.0094	15.8	0.0	0.011	15.6	0.0	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
GTP_EFTU_D4	PF14578.1	gi|379004686|ref|YP_005260358.1|	-	3.2e-29	100.4	4.9	3.2e-29	100.4	3.4	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	4
GTP_EFTU	PF00009.22	gi|379004686|ref|YP_005260358.1|	-	1e-26	93.5	0.0	1.1e-25	90.1	0.0	2.1	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
IF-2	PF11987.3	gi|379004686|ref|YP_005260358.1|	-	1.4e-16	60.3	0.0	3.1e-16	59.1	0.0	1.6	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|379004686|ref|YP_005260358.1|	-	6e-13	48.7	9.6	7.7e-10	38.7	0.1	2.8	2	0	0	2	2	2	2	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|379004686|ref|YP_005260358.1|	-	6.1e-05	22.9	0.0	0.00013	21.9	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|379004686|ref|YP_005260358.1|	-	0.00021	21.7	0.0	0.00049	20.5	0.0	1.6	1	0	0	1	1	1	1	Miro-like	protein
PduV-EutP	PF10662.4	gi|379004686|ref|YP_005260358.1|	-	0.068	12.6	0.0	0.3	10.5	0.0	2.1	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
AsnC_trans_reg	PF01037.16	gi|379004687|ref|YP_005260359.1|	-	1.9e-15	56.3	0.1	2.1e-15	56.1	0.1	1.0	1	0	0	1	1	1	1	AsnC	family
Ribosomal_S6e	PF01092.14	gi|379004688|ref|YP_005260360.1|	-	1.9e-26	92.2	0.1	2.3e-26	91.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S6e
TIM	PF00121.13	gi|379004692|ref|YP_005260364.1|	-	3.3e-30	104.9	0.1	7.6e-19	67.7	0.0	2.0	1	1	1	2	2	2	2	Triosephosphate	isomerase
ThiG	PF05690.9	gi|379004692|ref|YP_005260364.1|	-	2.7e-05	23.3	0.3	2.7e-05	23.3	0.2	1.9	1	1	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
NMO	PF03060.10	gi|379004692|ref|YP_005260364.1|	-	0.00011	21.4	6.3	0.00018	20.8	4.4	1.4	1	1	0	1	1	1	1	Nitronate	monooxygenase
IGPS	PF00218.16	gi|379004692|ref|YP_005260364.1|	-	0.00028	20.0	0.0	0.00052	19.1	0.0	1.5	1	1	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.16	gi|379004692|ref|YP_005260364.1|	-	0.0003	20.1	0.1	0.00088	18.6	0.0	1.8	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
FMN_dh	PF01070.13	gi|379004692|ref|YP_005260364.1|	-	0.0085	14.9	1.2	0.016	14.1	0.5	1.7	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Aconitase	PF00330.15	gi|379004694|ref|YP_005260366.1|	-	6.7e-138	460.0	0.0	8.6e-138	459.6	0.0	1.1	1	0	0	1	1	1	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|379004694|ref|YP_005260366.1|	-	5e-35	120.4	0.0	7.8e-35	119.8	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
HTH_38	PF13936.1	gi|379004694|ref|YP_005260366.1|	-	0.019	14.5	0.0	0.074	12.6	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
zinc_ribbon_2	PF13240.1	gi|379004695|ref|YP_005260367.1|	-	0.00021	20.6	0.7	0.19	11.2	0.1	2.1	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379004695|ref|YP_005260367.1|	-	0.00021	20.3	4.3	0.0054	15.9	2.9	2.2	1	1	1	2	2	2	2	zinc-ribbon	domain
CpXC	PF14353.1	gi|379004695|ref|YP_005260367.1|	-	0.00027	20.9	0.2	0.023	14.6	0.0	2.0	2	0	0	2	2	2	1	CpXC	protein
DZR	PF12773.2	gi|379004695|ref|YP_005260367.1|	-	0.0003	20.5	0.3	0.00045	19.9	0.2	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|379004695|ref|YP_005260367.1|	-	0.0018	17.8	0.3	0.0024	17.4	0.2	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|379004695|ref|YP_005260367.1|	-	0.004	16.8	1.0	2	8.1	0.0	2.5	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0547
Cys_rich_CPXG	PF14255.1	gi|379004695|ref|YP_005260367.1|	-	0.0061	16.3	1.2	0.36	10.6	0.3	2.2	1	1	1	2	2	2	1	Cysteine-rich	CPXCG
zf-LITAF-like	PF10601.4	gi|379004695|ref|YP_005260367.1|	-	0.0061	16.3	2.1	0.11	12.3	0.1	2.1	1	1	1	2	2	2	1	LITAF-like	zinc	ribbon	domain
DUF1610	PF07754.6	gi|379004695|ref|YP_005260367.1|	-	0.0079	16.2	1.9	1.8	8.7	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
Sgf11	PF08209.6	gi|379004695|ref|YP_005260367.1|	-	0.0083	15.4	1.3	0.45	9.8	0.1	2.2	2	0	0	2	2	2	1	Sgf11	(transcriptional	regulation	protein)
zf-ISL3	PF14690.1	gi|379004695|ref|YP_005260367.1|	-	0.013	15.5	4.2	0.94	9.5	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Mu-like_Com	PF10122.4	gi|379004695|ref|YP_005260367.1|	-	0.014	14.4	2.3	1.2	8.2	0.3	2.2	1	1	1	2	2	2	0	Mu-like	prophage	protein	Com
zinc_ribbon_5	PF13719.1	gi|379004695|ref|YP_005260367.1|	-	0.017	14.7	2.6	0.27	10.8	1.8	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|379004695|ref|YP_005260367.1|	-	0.023	14.5	0.6	0.19	11.5	0.4	2.0	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
TF_Zn_Ribbon	PF08271.7	gi|379004695|ref|YP_005260367.1|	-	0.023	14.0	1.9	0.074	12.3	1.3	1.8	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.1	gi|379004695|ref|YP_005260367.1|	-	0.024	14.3	3.1	0.47	10.1	2.1	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|379004695|ref|YP_005260367.1|	-	0.025	14.3	5.6	0.087	12.6	4.0	1.7	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|379004695|ref|YP_005260367.1|	-	0.036	14.3	3.8	0.091	13.0	2.6	1.7	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zf-C3HC4_3	PF13920.1	gi|379004695|ref|YP_005260367.1|	-	0.036	13.7	1.1	0.051	13.2	0.8	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF1922	PF09082.5	gi|379004695|ref|YP_005260367.1|	-	0.038	14.0	0.8	0.04	13.9	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1922)
Zn-ribbon_8	PF09723.5	gi|379004695|ref|YP_005260367.1|	-	0.042	13.8	5.2	1.3	9.0	0.5	2.2	1	1	1	2	2	2	0	Zinc	ribbon	domain
FYDLN_acid	PF09538.5	gi|379004695|ref|YP_005260367.1|	-	0.043	14.4	0.2	1.2	9.7	0.1	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
FYVE	PF01363.16	gi|379004695|ref|YP_005260367.1|	-	0.05	13.5	0.3	0.053	13.4	0.2	1.2	1	0	0	1	1	1	0	FYVE	zinc	finger
Zn_Tnp_IS91	PF14319.1	gi|379004695|ref|YP_005260367.1|	-	0.052	13.0	0.3	0.052	13.0	0.2	1.2	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
zinc_ribbon_6	PF14599.1	gi|379004695|ref|YP_005260367.1|	-	0.054	13.2	0.5	0.073	12.8	0.3	1.2	1	0	0	1	1	1	0	Zinc-ribbon
zf-H2C2_2	PF13465.1	gi|379004695|ref|YP_005260367.1|	-	0.054	13.8	2.5	0.65	10.4	0.3	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-CHCC	PF10276.4	gi|379004695|ref|YP_005260367.1|	-	0.066	13.0	3.6	0.12	12.1	0.3	2.1	2	0	0	2	2	2	0	Zinc-finger	domain
RPA_interact_C	PF14768.1	gi|379004695|ref|YP_005260367.1|	-	0.069	13.5	0.1	0.074	13.4	0.1	1.1	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
IBR	PF01485.16	gi|379004695|ref|YP_005260367.1|	-	0.072	12.9	1.0	0.1	12.5	0.7	1.3	1	0	0	1	1	1	0	IBR	domain
Molybdop_Fe4S4	PF04879.11	gi|379004695|ref|YP_005260367.1|	-	0.076	12.8	1.8	4.9	7.0	0.1	2.2	2	0	0	2	2	2	0	Molybdopterin	oxidoreductase	Fe4S4	domain
Ribosomal_L37e	PF01907.14	gi|379004695|ref|YP_005260367.1|	-	0.078	12.7	2.3	0.13	12.0	1.6	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-CHY	PF05495.7	gi|379004695|ref|YP_005260367.1|	-	0.078	13.1	0.7	0.11	12.6	0.5	1.2	1	0	0	1	1	1	0	CHY	zinc	finger
DUF329	PF03884.9	gi|379004695|ref|YP_005260367.1|	-	0.079	12.5	2.2	0.67	9.5	1.7	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF329)
zf-FPG_IleRS	PF06827.9	gi|379004695|ref|YP_005260367.1|	-	0.082	12.5	0.6	1	9.0	0.1	2.2	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
HypA	PF01155.14	gi|379004695|ref|YP_005260367.1|	-	0.09	12.4	2.0	0.1	12.2	1.1	1.4	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Prok-RING_1	PF14446.1	gi|379004695|ref|YP_005260367.1|	-	0.094	12.4	2.7	6.6	6.5	0.1	2.1	1	1	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zf-C2HC5	PF06221.8	gi|379004695|ref|YP_005260367.1|	-	0.095	12.4	0.3	0.12	12.0	0.2	1.3	1	0	0	1	1	1	0	Putative	zinc	finger	motif,	C2HC5-type
TerY-C	PF15616.1	gi|379004695|ref|YP_005260367.1|	-	0.1	12.5	1.7	0.32	10.9	1.2	1.7	1	1	0	1	1	1	0	TerY-C	metal	binding	domain
zf-RING_5	PF14634.1	gi|379004695|ref|YP_005260367.1|	-	0.12	12.1	1.4	0.18	11.5	1.0	1.4	1	0	0	1	1	1	0	zinc-RING	finger	domain
zf-C4_Topoisom	PF01396.14	gi|379004695|ref|YP_005260367.1|	-	0.12	11.9	0.9	8.2	6.0	0.1	2.1	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-C3HC4_4	PF15227.1	gi|379004695|ref|YP_005260367.1|	-	0.13	12.1	0.6	0.18	11.6	0.4	1.2	1	0	0	1	1	1	0	zinc	finger	of	C3HC4-type,	RING
Acetone_carb_G	PF08882.6	gi|379004695|ref|YP_005260367.1|	-	0.14	12.1	0.4	2.8	7.9	0.0	2.1	1	1	1	2	2	2	0	Acetone	carboxylase	gamma	subunit
zf-C2H2	PF00096.21	gi|379004695|ref|YP_005260367.1|	-	0.18	12.1	4.1	1.9	8.9	0.6	2.3	1	1	1	2	2	2	0	Zinc	finger,	C2H2	type
zf-Di19	PF05605.7	gi|379004695|ref|YP_005260367.1|	-	0.2	11.7	4.6	2.2	8.4	0.2	2.3	1	1	1	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2_4	PF13894.1	gi|379004695|ref|YP_005260367.1|	-	0.21	12.0	4.7	3	8.3	0.1	2.3	1	1	1	2	2	2	0	C2H2-type	zinc	finger
DUF2296	PF10058.4	gi|379004695|ref|YP_005260367.1|	-	0.27	10.9	1.7	0.74	9.6	1.1	1.7	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
DUF2225	PF09986.4	gi|379004695|ref|YP_005260367.1|	-	0.3	10.4	2.0	8.3	5.7	0.1	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
DNA_ligase_ZBD	PF03119.11	gi|379004695|ref|YP_005260367.1|	-	0.32	10.7	2.7	4	7.2	0.0	2.6	3	0	0	3	3	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-Mss51	PF13824.1	gi|379004695|ref|YP_005260367.1|	-	0.43	10.4	3.6	1.9	8.4	2.7	1.8	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Ogr_Delta	PF04606.7	gi|379004695|ref|YP_005260367.1|	-	0.44	10.2	4.2	6.2	6.5	0.8	2.3	1	1	1	2	2	2	0	Ogr/Delta-like	zinc	finger
DUF1936	PF09151.5	gi|379004695|ref|YP_005260367.1|	-	0.48	9.9	3.6	5.1	6.6	0.2	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
zf-tcix	PF14952.1	gi|379004695|ref|YP_005260367.1|	-	0.5	9.7	8.2	2.7	7.3	0.7	2.2	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-RING_3	PF14369.1	gi|379004695|ref|YP_005260367.1|	-	0.72	9.8	5.0	13	5.9	0.4	2.2	1	1	1	2	2	2	0	zinc-finger
zf-C2HC_2	PF13913.1	gi|379004695|ref|YP_005260367.1|	-	0.87	9.3	8.5	5	6.9	0.5	2.4	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
DUF164	PF02591.10	gi|379004695|ref|YP_005260367.1|	-	1.1	9.1	5.3	7.1	6.5	0.1	2.4	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
zf-NADH-PPase	PF09297.6	gi|379004695|ref|YP_005260367.1|	-	1.5	8.4	6.4	5.7	6.5	4.4	1.9	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1	PF03811.8	gi|379004695|ref|YP_005260367.1|	-	2.9	7.4	9.0	0.33	10.4	0.4	2.8	2	1	1	3	3	3	0	InsA	N-terminal	domain
DUF35_N	PF12172.3	gi|379004695|ref|YP_005260367.1|	-	7	6.6	6.7	83	3.2	4.6	2.2	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF3669	PF12417.3	gi|379004697|ref|YP_005260369.1|	-	0.62	9.8	6.0	0.69	9.6	4.1	1.0	1	0	0	1	1	1	0	Zinc	finger	protein
AdoMet_dc	PF02675.10	gi|379004698|ref|YP_005260370.1|	-	1.1e-33	115.3	0.0	1.2e-33	115.1	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
SIS	PF01380.17	gi|379004699|ref|YP_005260371.1|	-	1.2e-15	57.3	0.0	2e-15	56.5	0.0	1.4	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.1	gi|379004699|ref|YP_005260371.1|	-	3.9e-14	52.5	1.9	2.2e-08	33.9	0.7	2.4	1	1	1	2	2	2	2	SIS	domain
Sulf_transp	PF04143.9	gi|379004700|ref|YP_005260372.1|	-	9e-08	32.0	38.0	0.00011	22.1	5.5	4.0	4	0	0	4	4	4	2	Sulphur	transport
Pyr_redox_2	PF07992.9	gi|379004702|ref|YP_005260374.1|	-	2.4e-09	37.3	0.0	2.2e-08	34.2	0.0	2.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379004702|ref|YP_005260374.1|	-	1.3e-05	25.0	0.0	9.4e-05	22.2	0.0	2.2	1	1	1	2	2	2	1	FAD-NAD(P)-binding
DAO	PF01266.19	gi|379004702|ref|YP_005260374.1|	-	0.0038	16.1	0.0	0.33	9.7	0.0	2.5	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Gly-zipper_YMGG	PF13441.1	gi|379004702|ref|YP_005260374.1|	-	0.032	13.7	4.9	0.077	12.5	3.4	1.7	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
UCR_Fe-S_N	PF10399.4	gi|379004702|ref|YP_005260374.1|	-	0.11	11.6	3.3	0.23	10.6	2.3	1.5	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Gly-zipper_OmpA	PF13436.1	gi|379004702|ref|YP_005260374.1|	-	0.23	11.1	1.5	0.4	10.3	1.1	1.4	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
Flavoprotein	PF02441.14	gi|379004704|ref|YP_005260376.1|	-	2.2e-29	101.7	0.0	3.2e-29	101.2	0.0	1.2	1	0	0	1	1	1	1	Flavoprotein
Leucyl-specific	PF14795.1	gi|379004704|ref|YP_005260376.1|	-	0.16	11.8	2.2	0.84	9.5	0.1	2.5	2	1	1	3	3	3	0	Leucine-tRNA	synthetase-specific	domain
DUF340	PF03956.8	gi|379004706|ref|YP_005260378.1|	-	1.6e-40	138.4	15.5	3.5e-40	137.3	7.7	2.0	2	0	0	2	2	2	2	Membrane	protein	of	unknown	function	(DUF340)
PNP_UDP_1	PF01048.15	gi|379004708|ref|YP_005260380.1|	-	5.2e-29	100.8	0.9	6.3e-29	100.6	0.6	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Peptidase_M42	PF05343.9	gi|379004709|ref|YP_005260381.1|	-	3.6e-84	281.9	0.0	4.3e-84	281.7	0.0	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|379004709|ref|YP_005260381.1|	-	1.8e-09	37.3	0.0	3e-09	36.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M18	PF02127.10	gi|379004709|ref|YP_005260381.1|	-	8e-05	21.3	0.0	0.0088	14.5	0.0	2.2	1	1	1	2	2	2	2	Aminopeptidase	I	zinc	metalloprotease	(M18)
Peptidase_M28	PF04389.12	gi|379004709|ref|YP_005260381.1|	-	0.0021	17.8	0.0	0.012	15.3	0.0	2.2	2	1	0	2	2	2	1	Peptidase	family	M28
AA_permease_2	PF13520.1	gi|379004710|ref|YP_005260382.1|	-	2.1e-39	135.2	34.4	2.1e-39	135.2	23.8	1.8	1	1	2	3	3	3	2	Amino	acid	permease
AA_permease	PF00324.16	gi|379004710|ref|YP_005260382.1|	-	1.2e-27	96.4	39.0	1.7e-27	95.9	27.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
VirB3	PF05101.8	gi|379004710|ref|YP_005260382.1|	-	0.0082	16.1	1.2	0.0082	16.1	0.8	3.7	4	1	0	4	4	4	1	Type	IV	secretory	pathway,	VirB3-like	protein
Hexapep	PF00132.19	gi|379004712|ref|YP_005260384.1|	-	4.6e-29	98.6	31.6	1e-08	34.3	2.7	5.6	5	1	1	6	6	6	5	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|379004712|ref|YP_005260384.1|	-	7.1e-18	63.8	22.1	3.2e-07	29.7	2.7	6.2	5	1	0	5	5	5	4	Hexapeptide	repeat	of	succinyl-transferase
DUF2613	PF11021.3	gi|379004712|ref|YP_005260384.1|	-	9.6	6.0	10.5	8	6.2	5.7	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2613)
Metal_resist	PF13801.1	gi|379004713|ref|YP_005260385.1|	-	9.2e-05	22.4	9.4	0.00013	21.8	6.5	1.2	1	0	0	1	1	1	1	Heavy-metal	resistance
CK2S	PF15011.1	gi|379004713|ref|YP_005260385.1|	-	0.0014	18.4	4.5	0.11	12.2	0.1	2.4	1	1	1	2	2	2	1	Casein	Kinase	2	substrate
Microtub_assoc	PF07989.6	gi|379004713|ref|YP_005260385.1|	-	0.0014	18.3	0.3	0.0053	16.5	0.1	1.9	2	0	0	2	2	2	1	Microtubule	associated
Atg14	PF10186.4	gi|379004713|ref|YP_005260385.1|	-	0.0019	17.2	1.2	0.0021	17.0	0.8	1.0	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
SlyX	PF04102.7	gi|379004713|ref|YP_005260385.1|	-	0.0023	18.2	3.5	0.0067	16.7	0.1	2.6	1	1	1	2	2	2	1	SlyX
DUF4455	PF14643.1	gi|379004713|ref|YP_005260385.1|	-	0.0042	15.7	0.8	0.0052	15.4	0.5	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4455)
ING	PF12998.2	gi|379004713|ref|YP_005260385.1|	-	0.007	16.6	0.7	0.012	15.9	0.5	1.5	1	1	0	1	1	1	1	Inhibitor	of	growth	proteins	N-terminal	histone-binding
IncA	PF04156.9	gi|379004713|ref|YP_005260385.1|	-	0.0081	15.7	6.1	0.014	15.0	4.2	1.4	1	1	0	1	1	1	1	IncA	protein
Mod_r	PF07200.8	gi|379004713|ref|YP_005260385.1|	-	0.0087	15.9	1.6	0.0093	15.8	0.7	1.4	1	1	0	1	1	1	1	Modifier	of	rudimentary	(Mod(r))	protein
Reo_sigmaC	PF04582.7	gi|379004713|ref|YP_005260385.1|	-	0.011	14.9	0.1	0.022	13.9	0.0	1.5	1	1	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
Phage_lysis	PF03245.8	gi|379004713|ref|YP_005260385.1|	-	0.012	15.6	5.8	0.015	15.2	3.7	1.4	1	1	0	1	1	1	0	Bacteriophage	Rz	lysis	protein
Laminin_II	PF06009.7	gi|379004713|ref|YP_005260385.1|	-	0.016	14.9	0.9	0.018	14.7	0.6	1.2	1	0	0	1	1	1	0	Laminin	Domain	II
Spc24	PF08286.6	gi|379004713|ref|YP_005260385.1|	-	0.02	14.6	0.9	0.047	13.3	0.6	1.7	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
DUF3458	PF11940.3	gi|379004713|ref|YP_005260385.1|	-	0.022	13.6	2.3	0.023	13.5	1.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3458)
Baculo_PEP_C	PF04513.7	gi|379004713|ref|YP_005260385.1|	-	0.026	14.3	0.3	0.042	13.6	0.1	1.3	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FUSC	PF04632.7	gi|379004713|ref|YP_005260385.1|	-	0.029	12.8	8.2	0.033	12.6	5.7	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
TMCO5	PF14992.1	gi|379004713|ref|YP_005260385.1|	-	0.045	12.8	0.9	0.05	12.7	0.6	1.1	1	0	0	1	1	1	0	TMCO5	family
Occludin_ELL	PF07303.8	gi|379004713|ref|YP_005260385.1|	-	0.049	14.3	0.4	0.15	12.7	0.1	1.7	1	1	1	2	2	2	0	Occludin	homology	domain
DUF2203	PF09969.4	gi|379004713|ref|YP_005260385.1|	-	0.049	13.8	1.0	0.065	13.4	0.7	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2203)
Mnd1	PF03962.10	gi|379004713|ref|YP_005260385.1|	-	0.05	13.2	1.6	0.074	12.7	1.0	1.3	1	1	0	1	1	1	0	Mnd1	family
Spc7	PF08317.6	gi|379004713|ref|YP_005260385.1|	-	0.052	12.2	1.5	0.055	12.1	1.0	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Peptidase_M13_N	PF05649.8	gi|379004713|ref|YP_005260385.1|	-	0.061	12.3	1.5	1.1	8.2	0.3	2.0	1	1	1	2	2	2	0	Peptidase	family	M13
DUF2408	PF10303.4	gi|379004713|ref|YP_005260385.1|	-	0.07	13.2	0.2	0.089	12.9	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
CASP_C	PF08172.7	gi|379004713|ref|YP_005260385.1|	-	0.07	12.1	0.9	0.12	11.3	0.6	1.5	1	1	0	1	1	1	0	CASP	C	terminal
Zw10	PF06248.8	gi|379004713|ref|YP_005260385.1|	-	0.07	11.2	1.1	0.077	11.1	0.7	1.0	1	0	0	1	1	1	0	Centromere/kinetochore	Zw10
Apt1	PF10351.4	gi|379004713|ref|YP_005260385.1|	-	0.073	11.9	0.9	0.081	11.7	0.6	1.0	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
DUF2229	PF09989.4	gi|379004713|ref|YP_005260385.1|	-	0.074	12.4	0.9	0.08	12.3	0.6	1.1	1	0	0	1	1	1	0	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
DivIVA	PF05103.8	gi|379004713|ref|YP_005260385.1|	-	0.077	13.0	4.5	0.1	12.6	3.1	1.2	1	0	0	1	1	1	0	DivIVA	protein
ATG16	PF08614.6	gi|379004713|ref|YP_005260385.1|	-	0.077	12.8	3.2	0.13	12.1	2.3	1.4	1	1	0	1	1	1	0	Autophagy	protein	16	(ATG16)
DUF904	PF06005.7	gi|379004713|ref|YP_005260385.1|	-	0.08	13.2	2.9	0.16	12.3	2.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
DUF3475	PF11961.3	gi|379004713|ref|YP_005260385.1|	-	0.09	12.6	0.1	1.5	8.6	0.1	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3475)
Wbp11	PF09429.5	gi|379004713|ref|YP_005260385.1|	-	0.093	12.7	1.7	0.18	11.7	1.2	1.5	1	0	0	1	1	1	0	WW	domain	binding	protein	11
NPV_P10	PF05531.7	gi|379004713|ref|YP_005260385.1|	-	0.097	12.9	0.1	0.37	11.0	0.1	1.9	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
Syntaxin	PF00804.20	gi|379004713|ref|YP_005260385.1|	-	0.12	12.5	0.5	0.21	11.7	0.3	1.5	1	1	0	1	1	1	0	Syntaxin
Syntaxin_2	PF14523.1	gi|379004713|ref|YP_005260385.1|	-	0.12	12.4	0.3	0.17	11.9	0.2	1.3	1	0	0	1	1	1	0	Syntaxin-like	protein
TBPIP	PF07106.8	gi|379004713|ref|YP_005260385.1|	-	0.12	11.8	1.0	0.2	11.1	0.7	1.4	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Seryl_tRNA_N	PF02403.17	gi|379004713|ref|YP_005260385.1|	-	0.14	12.2	3.0	0.23	11.4	1.9	1.6	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF972	PF06156.8	gi|379004713|ref|YP_005260385.1|	-	0.14	12.5	1.8	0.48	10.7	1.3	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DUF4201	PF13870.1	gi|379004713|ref|YP_005260385.1|	-	0.17	11.2	2.4	1	8.7	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
MxiH	PF09392.5	gi|379004713|ref|YP_005260385.1|	-	0.18	12.3	2.6	0.3	11.6	1.7	1.5	1	1	0	1	1	1	0	Type	III	secretion	needle	MxiH	like
DUF4061	PF13270.1	gi|379004713|ref|YP_005260385.1|	-	0.2	11.7	1.9	0.29	11.2	0.2	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4061)
PspA_IM30	PF04012.7	gi|379004713|ref|YP_005260385.1|	-	0.2	10.9	11.2	0.25	10.6	7.7	1.1	1	0	0	1	1	1	0	PspA/IM30	family
APG6	PF04111.7	gi|379004713|ref|YP_005260385.1|	-	0.23	10.4	2.3	0.28	10.1	1.6	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
ADIP	PF11559.3	gi|379004713|ref|YP_005260385.1|	-	0.24	11.2	2.2	0.45	10.4	1.4	1.6	1	1	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Hemerythrin	PF01814.18	gi|379004713|ref|YP_005260385.1|	-	0.25	11.4	4.1	0.22	11.7	1.6	1.8	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
COG2	PF06148.6	gi|379004713|ref|YP_005260385.1|	-	0.31	10.9	4.0	4.9	7.0	2.8	2.0	1	1	0	1	1	1	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
DUF3138	PF11336.3	gi|379004713|ref|YP_005260385.1|	-	0.31	9.1	1.2	0.35	9.0	0.8	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3138)
Cep57_MT_bd	PF06657.8	gi|379004713|ref|YP_005260385.1|	-	0.4	10.6	3.1	0.26	11.2	0.4	1.8	2	0	0	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
MutS_IV	PF05190.13	gi|379004713|ref|YP_005260385.1|	-	0.43	10.7	2.3	10	6.3	0.3	2.2	2	0	0	2	2	2	0	MutS	family	domain	IV
CENP-F_leu_zip	PF10473.4	gi|379004713|ref|YP_005260385.1|	-	0.43	10.4	4.9	0.52	10.1	3.4	1.3	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
HK97-gp10_like	PF04883.7	gi|379004713|ref|YP_005260385.1|	-	0.67	10.9	4.4	0.4	11.6	1.1	2.1	1	1	1	2	2	2	0	Bacteriophage	HK97-gp10,	putative	tail-component
Med9	PF07544.8	gi|379004713|ref|YP_005260385.1|	-	0.71	9.6	5.5	7.7	6.3	0.3	2.2	1	1	0	2	2	2	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
TSC22	PF01166.13	gi|379004713|ref|YP_005260385.1|	-	1.2	9.0	4.1	1.9	8.4	0.3	2.3	2	0	0	2	2	2	0	TSC-22/dip/bun	family
DivIC	PF04977.10	gi|379004713|ref|YP_005260385.1|	-	1.7	8.1	6.0	0.71	9.4	1.5	2.0	1	1	1	2	2	2	0	Septum	formation	initiator
AATF-Che1	PF13339.1	gi|379004713|ref|YP_005260385.1|	-	1.8	8.7	5.4	2.7	8.1	1.3	2.0	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
PV-1	PF06637.6	gi|379004713|ref|YP_005260385.1|	-	1.9	6.9	8.1	2.1	6.8	5.6	1.0	1	0	0	1	1	1	0	PV-1	protein	(PLVAP)
TMF_DNA_bd	PF12329.3	gi|379004713|ref|YP_005260385.1|	-	2	8.3	6.1	1.2	8.9	0.2	2.5	2	1	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
GTPase_Cys_C	PF12631.2	gi|379004713|ref|YP_005260385.1|	-	2.4	8.5	4.6	0.63	10.4	1.1	1.7	2	0	0	2	2	1	0	Catalytic	cysteine-containing	C-terminus	of	GTPase,	MnmE
Reo_sigmaC	PF04582.7	gi|379004714|ref|YP_005260386.1|	-	7.2e-05	22.1	22.9	0.068	12.3	0.6	3.5	1	1	1	3	3	3	3	Reovirus	sigma	C	capsid	protein
Laminin_II	PF06009.7	gi|379004714|ref|YP_005260386.1|	-	0.00042	20.0	7.3	0.00042	20.0	5.1	5.3	1	1	5	6	6	6	2	Laminin	Domain	II
IFT57	PF10498.4	gi|379004714|ref|YP_005260386.1|	-	0.0025	16.6	1.2	0.0025	16.6	0.8	3.8	1	1	2	3	3	3	1	Intra-flagellar	transport	protein	57
Baculo_PEP_C	PF04513.7	gi|379004714|ref|YP_005260386.1|	-	0.0035	17.1	29.3	0.064	13.0	4.0	5.7	2	1	4	6	6	6	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MCPsignal	PF00015.16	gi|379004714|ref|YP_005260386.1|	-	0.0056	16.2	9.5	0.0056	16.2	6.6	4.1	2	2	2	4	4	4	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF948	PF06103.6	gi|379004714|ref|YP_005260386.1|	-	0.0064	16.3	24.0	0.22	11.3	0.4	5.7	2	2	3	5	5	5	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF3086	PF11285.3	gi|379004714|ref|YP_005260386.1|	-	0.011	14.6	1.3	0.011	14.6	0.9	3.6	2	2	2	4	4	3	0	Protein	of	unknown	function	(DUF3086)
Vip3A_N	PF12495.3	gi|379004714|ref|YP_005260386.1|	-	0.014	15.1	5.4	0.2	11.3	0.2	2.8	2	1	1	3	3	3	0	Vegetative	insecticide	protein	3A	N	terminal
NPV_P10	PF05531.7	gi|379004714|ref|YP_005260386.1|	-	0.059	13.6	24.5	4.5	7.6	2.9	5.4	2	1	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
IncA	PF04156.9	gi|379004714|ref|YP_005260386.1|	-	0.19	11.2	69.2	0.28	10.7	2.0	4.6	1	1	3	4	4	4	0	IncA	protein
Spectrin	PF00435.16	gi|379004714|ref|YP_005260386.1|	-	0.43	10.8	53.1	0.41	10.9	0.6	5.8	1	1	4	6	6	6	0	Spectrin	repeat
Spc7	PF08317.6	gi|379004714|ref|YP_005260386.1|	-	0.6	8.7	58.1	0.026	13.1	4.8	4.4	1	1	4	5	5	5	0	Spc7	kinetochore	protein
AAA_27	PF13514.1	gi|379004714|ref|YP_005260386.1|	-	0.9	7.1	66.4	6.8	4.2	1.0	3.2	1	1	2	3	3	3	0	AAA	domain
V_ATPase_I	PF01496.14	gi|379004714|ref|YP_005260386.1|	-	1.7	6.3	44.8	0.32	8.8	0.7	3.5	1	1	1	3	3	3	0	V-type	ATPase	116kDa	subunit	family
DUF1664	PF07889.7	gi|379004714|ref|YP_005260386.1|	-	2.7	7.7	37.5	1	9.1	0.8	5.6	1	1	5	6	6	6	0	Protein	of	unknown	function	(DUF1664)
PspA_IM30	PF04012.7	gi|379004714|ref|YP_005260386.1|	-	3.5	6.9	76.5	0.085	12.2	14.7	4.4	1	1	3	4	4	4	0	PspA/IM30	family
EzrA	PF06160.7	gi|379004714|ref|YP_005260386.1|	-	3.7	5.6	48.2	2.1	6.4	31.5	2.3	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
DUF3584	PF12128.3	gi|379004714|ref|YP_005260386.1|	-	3.8	4.7	55.8	0.11	9.7	15.8	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
PaRep2b	PF07775.6	gi|379004715|ref|YP_005260387.1|	-	4.9e-06	25.0	0.2	6.6e-06	24.6	0.1	1.2	1	0	0	1	1	1	1	PaRep2b	protein
ZYG-11_interact	PF05884.7	gi|379004716|ref|YP_005260388.1|	-	0.0056	15.7	3.4	0.0066	15.5	2.3	1.1	1	0	0	1	1	1	1	Interactor	of	ZYG-11
Bac_rhodopsin	PF01036.13	gi|379004716|ref|YP_005260388.1|	-	0.13	11.5	6.3	0.056	12.7	2.7	1.6	2	0	0	2	2	2	0	Bacteriorhodopsin-like	protein
MS_channel	PF00924.13	gi|379004718|ref|YP_005260390.1|	-	1.4e-20	73.5	1.5	1.4e-20	73.5	1.0	2.1	1	1	1	2	2	2	1	Mechanosensitive	ion	channel
Glyco_transf_20	PF00982.16	gi|379004719|ref|YP_005260391.1|	-	1.1e-145	485.7	0.0	1.3e-145	485.4	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	family	20
Trehalose_PPase	PF02358.11	gi|379004719|ref|YP_005260391.1|	-	2.5e-55	186.9	0.0	3.7e-55	186.4	0.0	1.2	1	0	0	1	1	1	1	Trehalose-phosphatase
Hydrolase_3	PF08282.7	gi|379004719|ref|YP_005260391.1|	-	2e-07	30.8	0.0	0.013	15.1	0.0	2.3	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|379004719|ref|YP_005260391.1|	-	4.8e-06	26.0	0.0	1.5e-05	24.4	0.0	1.8	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Glycos_transf_1	PF00534.15	gi|379004719|ref|YP_005260391.1|	-	0.00037	19.9	0.0	0.5	9.7	0.0	2.8	3	0	0	3	3	3	2	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004719|ref|YP_005260391.1|	-	0.0045	17.1	0.1	0.018	15.1	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
HAD	PF12710.2	gi|379004719|ref|YP_005260391.1|	-	0.035	14.2	0.0	0.12	12.4	0.0	2.1	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
Med9	PF07544.8	gi|379004719|ref|YP_005260391.1|	-	1.3	8.7	3.8	24	4.7	0.1	2.7	3	0	0	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Glycos_transf_1	PF00534.15	gi|379004720|ref|YP_005260392.1|	-	3e-13	49.5	0.0	1e-12	47.8	0.0	1.9	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004720|ref|YP_005260392.1|	-	4.7e-08	33.2	0.0	1.9e-07	31.2	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004720|ref|YP_005260392.1|	-	1.3e-06	28.5	0.1	1.9e-05	24.8	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|379004720|ref|YP_005260392.1|	-	0.0022	18.1	0.1	0.0043	17.2	0.1	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_transf_4	PF13439.1	gi|379004720|ref|YP_005260392.1|	-	0.012	15.3	0.0	0.03	14.0	0.0	1.6	1	0	0	1	1	1	0	Glycosyltransferase	Family	4
TM_helix	PF05552.7	gi|379004721|ref|YP_005260393.1|	-	0.0012	18.4	0.4	0.0012	18.4	0.3	3.9	4	1	1	5	5	5	1	Conserved	TM	helix
Colicin_V	PF02674.11	gi|379004721|ref|YP_005260393.1|	-	6.3	6.6	28.0	1.2	9.0	0.6	2.6	1	1	1	2	2	2	0	Colicin	V	production	protein
Glycos_transf_1	PF00534.15	gi|379004723|ref|YP_005260395.1|	-	4.5e-22	78.2	0.0	7.7e-22	77.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004723|ref|YP_005260395.1|	-	2.7e-06	27.5	0.0	4.8e-06	26.7	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004723|ref|YP_005260395.1|	-	4.3e-05	23.6	0.0	9.5e-05	22.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Hydrolase_3	PF08282.7	gi|379004724|ref|YP_005260396.1|	-	3.6e-07	30.0	0.0	0.0019	17.8	0.0	2.1	2	0	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Trehalose_PPase	PF02358.11	gi|379004724|ref|YP_005260396.1|	-	8.7e-06	24.8	0.0	1.2e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Trehalose-phosphatase
S6PP	PF05116.8	gi|379004724|ref|YP_005260396.1|	-	0.00011	21.6	0.0	0.0002	20.7	0.0	1.4	1	0	0	1	1	1	1	Sucrose-6F-phosphate	phosphohydrolase
HAD	PF12710.2	gi|379004724|ref|YP_005260396.1|	-	0.0012	19.0	0.1	0.005	17.0	0.1	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379004724|ref|YP_005260396.1|	-	0.0087	16.4	0.1	0.031	14.6	0.1	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cytochrom_C	PF00034.16	gi|379004725|ref|YP_005260397.1|	-	0.002	18.9	0.5	0.0056	17.4	0.4	1.8	1	1	0	1	1	1	1	Cytochrome	c
Cytochrome_CBB3	PF13442.1	gi|379004725|ref|YP_005260397.1|	-	0.019	15.0	0.6	0.036	14.2	0.4	1.7	1	1	0	1	1	1	0	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
Cytochrom_C1	PF02167.10	gi|379004725|ref|YP_005260397.1|	-	0.099	12.2	0.0	0.2	11.3	0.0	1.5	1	0	0	1	1	1	0	Cytochrome	C1	family
UbiA	PF01040.13	gi|379004726|ref|YP_005260398.1|	-	1.1e-32	113.2	33.9	1.6e-32	112.7	23.5	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
FA_desaturase	PF00487.19	gi|379004726|ref|YP_005260398.1|	-	0.78	9.1	19.5	0.25	10.7	4.0	2.5	2	1	0	2	2	2	0	Fatty	acid	desaturase
DUF461	PF04314.8	gi|379004727|ref|YP_005260399.1|	-	3.2e-09	36.4	0.0	4.7e-09	35.8	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF461)
Synuclein	PF01387.12	gi|379004728|ref|YP_005260400.1|	-	0.0092	15.8	0.7	0.61	9.9	0.0	2.2	2	0	0	2	2	2	2	Synuclein
HTH_5	PF01022.15	gi|379004729|ref|YP_005260401.1|	-	0.00026	20.5	0.5	0.089	12.4	0.0	2.7	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
HTH_IclR	PF09339.5	gi|379004729|ref|YP_005260401.1|	-	0.00068	19.1	0.0	0.0018	17.8	0.0	1.7	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_7	PF02796.10	gi|379004729|ref|YP_005260401.1|	-	0.0076	16.0	0.0	0.017	14.9	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_24	PF13412.1	gi|379004729|ref|YP_005260401.1|	-	0.019	14.3	0.1	0.044	13.1	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379004729|ref|YP_005260401.1|	-	0.026	14.2	0.0	0.16	11.6	0.0	2.1	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|379004729|ref|YP_005260401.1|	-	0.047	13.3	0.6	0.11	12.2	0.0	1.9	3	0	0	3	3	3	0	HTH	domain
HTH_28	PF13518.1	gi|379004729|ref|YP_005260401.1|	-	0.094	12.7	0.0	0.22	11.5	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
RseC_MucC	PF04246.7	gi|379004731|ref|YP_005260403.1|	-	0.016	14.7	0.4	0.016	14.7	0.2	1.0	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF308	PF03729.8	gi|379004731|ref|YP_005260403.1|	-	0.28	11.2	5.1	6.1	6.9	0.1	2.0	1	1	1	2	2	2	0	Short	repeat	of	unknown	function	(DUF308)
IncA	PF04156.9	gi|379004731|ref|YP_005260403.1|	-	1.7	8.2	5.0	2.1	7.9	3.4	1.1	1	0	0	1	1	1	0	IncA	protein
DUF454	PF04304.8	gi|379004731|ref|YP_005260403.1|	-	2.3	8.2	4.5	1.1	9.3	1.6	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF454)
COX1	PF00115.15	gi|379004732|ref|YP_005260404.1|	-	5.2e-131	437.3	53.5	5.2e-131	437.3	37.1	2.8	3	1	0	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.13	gi|379004732|ref|YP_005260404.1|	-	1.5e-17	63.9	12.8	1.5e-17	63.9	8.9	2.9	3	0	0	3	3	3	1	Cytochrome	c	oxidase	subunit	III
COX2	PF00116.15	gi|379004733|ref|YP_005260405.1|	-	2.2e-20	72.6	0.1	4.2e-20	71.7	0.0	1.4	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.1	gi|379004733|ref|YP_005260405.1|	-	3.9e-06	26.7	0.0	5e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
ABC2_membrane_3	PF12698.2	gi|379004734|ref|YP_005260406.1|	-	0.28	10.1	4.2	0.35	9.8	2.9	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Syndecan	PF01034.15	gi|379004734|ref|YP_005260406.1|	-	1.5	8.5	4.5	0.57	9.8	0.3	1.9	2	0	0	2	2	2	0	Syndecan	domain
AA_permease_C	PF13906.1	gi|379004734|ref|YP_005260406.1|	-	8.4	6.3	15.0	0.096	12.5	3.6	2.2	1	1	1	2	2	2	0	C-terminus	of	AA_permease
Cytochrom_C_asm	PF01578.15	gi|379004736|ref|YP_005260408.1|	-	1.7e-08	34.3	33.4	5.6e-08	32.6	12.8	3.6	2	2	1	3	3	3	2	Cytochrome	C	assembly	protein
Cytochrom_C	PF00034.16	gi|379004737|ref|YP_005260409.1|	-	1.8e-05	25.4	0.3	5.6e-05	23.9	0.0	1.9	2	1	0	2	2	2	1	Cytochrome	c
Cytochrom_C1	PF02167.10	gi|379004737|ref|YP_005260409.1|	-	0.0013	18.4	1.4	0.0061	16.2	1.0	2.2	1	1	0	1	1	1	1	Cytochrome	C1	family
Cytochrome_CBB3	PF13442.1	gi|379004737|ref|YP_005260409.1|	-	0.0033	17.5	0.0	0.065	13.3	0.0	2.3	2	0	0	2	2	2	1	Cytochrome	C	oxidase,	cbb3-type,	subunit	III
SP_C-Propep	PF08999.5	gi|379004737|ref|YP_005260409.1|	-	0.57	9.7	3.3	16	5.0	0.0	2.6	3	0	0	3	3	3	0	Surfactant	protein	C,	N	terminal	propeptide
Rieske	PF00355.21	gi|379004738|ref|YP_005260410.1|	-	1.9e-10	40.1	0.1	2.6e-10	39.7	0.1	1.3	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
UCR_Fe-S_N	PF10399.4	gi|379004738|ref|YP_005260410.1|	-	0.002	17.2	0.1	0.0038	16.3	0.1	1.4	1	0	0	1	1	1	1	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
TAT_signal	PF10518.4	gi|379004738|ref|YP_005260410.1|	-	0.0065	16.3	0.5	0.015	15.2	0.3	1.6	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Cytochrom_B_N_2	PF13631.1	gi|379004739|ref|YP_005260411.1|	-	3e-38	131.2	9.2	3e-38	131.2	6.4	2.5	4	0	0	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
PepSY_TM	PF03929.11	gi|379004739|ref|YP_005260411.1|	-	0.074	13.4	0.0	0.074	13.4	0.0	5.3	7	0	0	7	7	7	0	PepSY-associated	TM	helix
DUF4405	PF14358.1	gi|379004739|ref|YP_005260411.1|	-	1.4	9.0	12.1	0.27	11.3	1.0	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4405)
DUF4077	PF13295.1	gi|379004740|ref|YP_005260412.1|	-	0.36	10.5	3.4	1.1	8.9	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4077)
DUF2189	PF09955.4	gi|379004740|ref|YP_005260412.1|	-	0.45	10.4	7.8	0.96	9.3	5.4	1.6	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2189)
VirB3	PF05101.8	gi|379004740|ref|YP_005260412.1|	-	1.6	8.7	5.9	1.2	9.2	0.9	2.3	1	1	1	2	2	2	0	Type	IV	secretory	pathway,	VirB3-like	protein
ATP_synt_I	PF03899.10	gi|379004740|ref|YP_005260412.1|	-	2.8	8.1	8.8	1.3	9.2	3.3	2.0	2	0	0	2	2	2	0	ATP	synthase	I	chain
DUF4191	PF13829.1	gi|379004741|ref|YP_005260413.1|	-	0.015	14.3	0.1	0.017	14.2	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4191)
EamA	PF00892.15	gi|379004741|ref|YP_005260413.1|	-	0.074	13.1	3.3	0.46	10.5	0.7	2.0	2	0	0	2	2	2	0	EamA-like	transporter	family
ELO	PF01151.13	gi|379004741|ref|YP_005260413.1|	-	0.099	11.9	1.9	0.17	11.1	0.1	1.8	1	1	1	2	2	2	0	GNS1/SUR4	family
Tad	PF13400.1	gi|379004741|ref|YP_005260413.1|	-	6.4	6.8	7.9	9.7	6.3	1.1	2.3	2	0	0	2	2	2	0	Putative	Flp	pilus-assembly	TadE/G-like
CoxIIa	PF08113.6	gi|379004742|ref|YP_005260414.1|	-	0.00053	19.6	2.4	0.00064	19.3	1.7	1.2	1	0	0	1	1	1	1	Cytochrome	c	oxidase	subunit	IIa	family
COX2	PF00116.15	gi|379004743|ref|YP_005260415.1|	-	2.6e-22	78.9	0.2	3.8e-22	78.3	0.2	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Adeno_E3_CR2	PF02439.10	gi|379004743|ref|YP_005260415.1|	-	0.93	9.0	3.5	2	7.9	2.4	1.5	1	0	0	1	1	1	0	Adenovirus	E3	region	protein	CR2
COX1	PF00115.15	gi|379004744|ref|YP_005260416.1|	-	8.4e-80	268.5	47.5	1.1e-79	268.1	32.9	1.2	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
SCO1-SenC	PF02630.9	gi|379004745|ref|YP_005260417.1|	-	9.1e-14	51.4	0.0	1.6e-13	50.6	0.0	1.3	1	1	0	1	1	1	1	SCO1/SenC
Redoxin	PF08534.5	gi|379004745|ref|YP_005260417.1|	-	0.00019	21.0	0.0	0.00074	19.0	0.0	1.8	1	1	0	1	1	1	1	Redoxin
AhpC-TSA	PF00578.16	gi|379004745|ref|YP_005260417.1|	-	0.0004	20.0	0.0	0.0006	19.4	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
DUF2592	PF10766.4	gi|379004745|ref|YP_005260417.1|	-	0.0093	15.2	1.8	0.027	13.8	1.2	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2592)
PsbX	PF06596.6	gi|379004745|ref|YP_005260417.1|	-	0.68	9.6	3.4	1.5	8.5	2.3	1.5	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	X	protein	(PsbX)
DrsE_2	PF13686.1	gi|379004747|ref|YP_005260419.1|	-	3.1e-08	33.5	0.0	3.5e-08	33.3	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|379004747|ref|YP_005260419.1|	-	0.00054	20.0	0.0	0.0017	18.4	0.0	1.9	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DUF1981	PF09324.5	gi|379004747|ref|YP_005260419.1|	-	0.14	11.6	0.0	0.24	10.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1981)
DUF336	PF03928.9	gi|379004748|ref|YP_005260420.1|	-	8.1e-32	109.7	1.8	8.9e-32	109.6	1.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF336)
Inositol_P	PF00459.20	gi|379004749|ref|YP_005260421.1|	-	6.3e-21	74.8	0.0	9.2e-21	74.3	0.0	1.2	1	0	0	1	1	1	1	Inositol	monophosphatase	family
HTH_29	PF13551.1	gi|379004749|ref|YP_005260421.1|	-	0.039	14.1	0.2	0.074	13.2	0.2	1.5	1	0	0	1	1	1	0	Winged	helix-turn	helix
FBPase	PF00316.15	gi|379004749|ref|YP_005260421.1|	-	0.072	11.9	0.0	0.098	11.4	0.0	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase
PEP-utilizers	PF00391.18	gi|379004750|ref|YP_005260422.1|	-	8.1e-24	82.9	0.8	1.8e-23	81.9	0.5	1.6	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Rho_N	PF07498.7	gi|379004750|ref|YP_005260422.1|	-	0.032	13.9	0.4	0.11	12.2	0.2	2.0	2	0	0	2	2	2	0	Rho	termination	factor,	N-terminal	domain
Rieske	PF00355.21	gi|379004751|ref|YP_005260423.1|	-	2.6e-08	33.3	0.0	2.9e-08	33.1	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|379004751|ref|YP_005260423.1|	-	3e-07	30.0	0.0	3.7e-07	29.8	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
HAD_2	PF13419.1	gi|379004753|ref|YP_005260425.1|	-	3.8e-16	59.7	0.0	4.5e-16	59.5	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379004753|ref|YP_005260425.1|	-	4e-09	36.0	0.0	7.3e-09	35.2	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|379004753|ref|YP_005260425.1|	-	4.2e-06	27.3	0.1	3.4e-05	24.3	0.1	1.9	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379004753|ref|YP_005260425.1|	-	0.0014	18.7	0.0	0.002	18.3	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
SMC_hinge	PF06470.8	gi|379004753|ref|YP_005260425.1|	-	0.0045	16.9	0.0	0.011	15.7	0.0	1.7	1	0	0	1	1	1	1	SMC	proteins	Flexible	Hinge	Domain
Aldedh	PF00171.17	gi|379004754|ref|YP_005260426.1|	-	1.2e-140	468.9	0.3	1.4e-140	468.7	0.2	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|379004754|ref|YP_005260426.1|	-	0.011	14.4	0.0	0.017	13.8	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
PPDK_N	PF01326.14	gi|379004755|ref|YP_005260427.1|	-	2.5e-92	309.4	0.0	3.2e-92	309.0	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers	PF00391.18	gi|379004756|ref|YP_005260428.1|	-	3.9e-25	87.2	0.1	6.8e-25	86.4	0.1	1.4	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
PEP-utilisers_N	PF05524.8	gi|379004756|ref|YP_005260428.1|	-	0.1	12.3	0.3	3.3	7.5	0.0	2.5	2	0	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
Scm3	PF10384.4	gi|379004756|ref|YP_005260428.1|	-	0.15	11.5	0.4	7.9	6.0	0.2	2.5	2	0	0	2	2	2	0	Centromere	protein	Scm3
Hydrolase_6	PF13344.1	gi|379004757|ref|YP_005260429.1|	-	2.3e-18	65.9	0.0	2.1e-17	62.8	0.0	2.0	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379004757|ref|YP_005260429.1|	-	2.1e-16	59.3	0.0	5.3e-16	58.0	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.1	gi|379004757|ref|YP_005260429.1|	-	1.3e-08	35.3	0.0	0.00039	20.6	0.0	2.7	2	1	1	3	3	3	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379004757|ref|YP_005260429.1|	-	9.1e-05	22.9	0.0	0.00012	22.5	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
MAF_flag10	PF01973.13	gi|379004757|ref|YP_005260429.1|	-	0.065	12.7	0.0	13	5.2	0.0	3.2	3	1	0	3	3	3	0	Protein	of	unknown	function	DUF115
Hydrolase_6	PF13344.1	gi|379004758|ref|YP_005260430.1|	-	8.8e-14	51.2	0.0	1.9e-13	50.1	0.0	1.6	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|379004758|ref|YP_005260430.1|	-	2e-11	43.4	0.1	3.7e-11	42.5	0.1	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD_2	PF13419.1	gi|379004758|ref|YP_005260430.1|	-	2.9e-10	40.6	0.0	2.2e-07	31.2	0.0	2.4	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|379004758|ref|YP_005260430.1|	-	0.00019	21.9	0.0	0.0058	17.0	0.0	2.2	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Antitoxin-MazE	PF04014.13	gi|379004759|ref|YP_005260431.1|	-	0.00093	18.8	0.0	0.0025	17.4	0.0	1.8	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
IL34	PF15036.1	gi|379004759|ref|YP_005260431.1|	-	0.4	10.2	4.5	0.65	9.5	0.3	3.1	2	1	1	3	3	3	0	Interleukin	34
LigA	PF07746.6	gi|379004760|ref|YP_005260432.1|	-	4.5e-08	32.9	0.0	4.7e-08	32.9	0.0	1.1	1	0	0	1	1	1	1	Aromatic-ring-opening	dioxygenase	LigAB,	LigA	subunit
LigB	PF02900.13	gi|379004761|ref|YP_005260433.1|	-	1.4e-54	184.8	0.0	1.7e-54	184.6	0.0	1.0	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
ETF_alpha	PF00766.14	gi|379004762|ref|YP_005260434.1|	-	1.5e-27	95.0	0.2	2.2e-27	94.5	0.2	1.3	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|379004762|ref|YP_005260434.1|	-	1e-06	28.5	0.2	1.3e-05	24.9	0.0	2.1	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
Phenol_Hydrox	PF02332.13	gi|379004763|ref|YP_005260435.1|	-	6.6e-10	38.6	0.1	8.8e-10	38.2	0.1	1.0	1	0	0	1	1	1	1	Methane/Phenol/Toluene	Hydroxylase
Rieske	PF00355.21	gi|379004764|ref|YP_005260436.1|	-	1.8e-10	40.2	0.0	1.9e-10	40.1	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|379004764|ref|YP_005260436.1|	-	8.8e-07	28.5	0.0	1.2e-06	28.2	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
RnfC_N	PF13375.1	gi|379004764|ref|YP_005260436.1|	-	0.094	12.4	0.1	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	RnfC	Barrel	sandwich	hybrid	domain
PQQ_3	PF13570.1	gi|379004764|ref|YP_005260436.1|	-	0.11	12.7	0.8	1.5	9.2	0.0	2.5	2	1	0	2	2	2	0	PQQ-like	domain
Rieske	PF00355.21	gi|379004765|ref|YP_005260437.1|	-	8.5e-11	41.2	0.1	1.4e-10	40.5	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|379004765|ref|YP_005260437.1|	-	7.6e-05	22.3	0.0	0.00012	21.7	0.0	1.3	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
NUDIX	PF00293.23	gi|379004766|ref|YP_005260438.1|	-	5.9e-19	68.0	0.1	8e-19	67.6	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
Rieske	PF00355.21	gi|379004767|ref|YP_005260439.1|	-	8e-10	38.1	0.0	9.7e-10	37.8	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|379004767|ref|YP_005260439.1|	-	4.7e-05	23.0	0.0	6e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DUF2173	PF09941.4	gi|379004768|ref|YP_005260440.1|	-	0.004	17.0	0.0	0.014	15.2	0.0	1.8	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2173)
GCR1_C	PF12550.3	gi|379004769|ref|YP_005260441.1|	-	0.059	13.2	0.9	0.51	10.2	0.1	2.4	2	0	0	2	2	2	0	Transcriptional	activator	of	glycolytic	enzymes
Sec39	PF08314.6	gi|379004769|ref|YP_005260441.1|	-	0.14	10.0	0.0	0.24	9.3	0.0	1.3	2	0	0	2	2	2	0	Secretory	pathway	protein	Sec39
ADH_N	PF08240.7	gi|379004770|ref|YP_005260442.1|	-	3e-23	81.6	0.1	5.4e-23	80.8	0.1	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|379004770|ref|YP_005260442.1|	-	1.3e-19	70.0	1.2	2.5e-19	69.0	0.3	1.9	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|379004770|ref|YP_005260442.1|	-	1.6e-05	24.5	0.7	2.5e-05	23.9	0.5	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_10	PF13460.1	gi|379004770|ref|YP_005260442.1|	-	2.5e-05	24.3	0.7	3.6e-05	23.8	0.5	1.3	1	0	0	1	1	1	1	NADH(P)-binding
ADH_zinc_N_2	PF13602.1	gi|379004770|ref|YP_005260442.1|	-	0.00014	22.7	1.0	0.00021	22.1	0.1	1.8	2	1	0	2	2	2	1	Zinc-binding	dehydrogenase
TrkA_N	PF02254.13	gi|379004770|ref|YP_005260442.1|	-	0.0093	15.9	0.0	0.014	15.3	0.0	1.2	1	0	0	1	1	1	1	TrkA-N	domain
Semialdhyde_dh	PF01118.19	gi|379004770|ref|YP_005260442.1|	-	0.012	15.8	0.1	0.022	15.0	0.1	1.4	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.8	gi|379004770|ref|YP_005260442.1|	-	0.019	14.2	0.5	0.026	13.7	0.3	1.2	1	0	0	1	1	1	0	NmrA-like	family
ELFV_dehydrog	PF00208.16	gi|379004770|ref|YP_005260442.1|	-	0.019	14.5	0.3	0.029	13.9	0.2	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
FAA_hydrolase	PF01557.13	gi|379004771|ref|YP_005260443.1|	-	6.5e-70	234.9	0.0	8.5e-70	234.5	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
Fer4_15	PF13459.1	gi|379004772|ref|YP_005260444.1|	-	2.9e-07	30.9	0.1	4.1e-07	30.4	0.1	1.3	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379004772|ref|YP_005260444.1|	-	0.00065	20.0	0.7	0.0017	18.7	0.5	1.6	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_19	PF06902.6	gi|379004772|ref|YP_005260444.1|	-	0.0029	17.4	0.5	0.0081	15.9	0.3	1.6	1	1	0	1	1	1	1	Divergent	4Fe-4S	mono-cluster
Fer4_10	PF13237.1	gi|379004772|ref|YP_005260444.1|	-	0.0063	16.2	0.3	0.0099	15.6	0.2	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004772|ref|YP_005260444.1|	-	0.052	13.9	0.1	0.3	11.5	0.0	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Thioredoxin_2	PF13098.1	gi|379004772|ref|YP_005260444.1|	-	0.053	13.7	0.1	0.055	13.6	0.1	1.2	1	0	0	1	1	1	0	Thioredoxin-like	domain
Fer4_6	PF12837.2	gi|379004772|ref|YP_005260444.1|	-	0.085	12.7	2.7	0.17	11.8	0.5	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Thioredoxin_3	PF13192.1	gi|379004772|ref|YP_005260444.1|	-	0.13	12.1	0.1	0.16	11.8	0.1	1.2	1	0	0	1	1	1	0	Thioredoxin	domain
Fer4_4	PF12800.2	gi|379004772|ref|YP_005260444.1|	-	0.13	12.6	0.9	0.13	12.6	0.7	1.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
HTH_IclR	PF09339.5	gi|379004773|ref|YP_005260445.1|	-	0.00037	20.0	0.0	0.00064	19.2	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379004773|ref|YP_005260445.1|	-	0.00053	19.3	0.0	0.00085	18.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|379004773|ref|YP_005260445.1|	-	0.00077	19.0	0.0	0.002	17.7	0.0	1.8	1	1	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|379004773|ref|YP_005260445.1|	-	0.0015	18.3	0.0	0.0032	17.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|379004773|ref|YP_005260445.1|	-	0.0062	16.2	0.0	0.011	15.4	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379004773|ref|YP_005260445.1|	-	0.017	14.8	0.0	0.026	14.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_5	PF01022.15	gi|379004773|ref|YP_005260445.1|	-	0.02	14.5	0.0	0.14	11.8	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
z-alpha	PF02295.12	gi|379004773|ref|YP_005260445.1|	-	0.059	13.1	0.0	0.081	12.7	0.0	1.2	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
NosL	PF05573.7	gi|379004774|ref|YP_005260446.1|	-	1.7e-09	37.5	0.7	1.7e-08	34.3	0.5	2.2	1	1	0	1	1	1	1	NosL
Pyr_redox_3	PF13738.1	gi|379004774|ref|YP_005260446.1|	-	0.029	14.4	1.9	1.9	8.5	1.1	2.7	1	1	2	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Mucin	PF01456.12	gi|379004774|ref|YP_005260446.1|	-	0.16	11.7	16.1	0.25	11.0	11.2	1.3	1	0	0	1	1	1	0	Mucin-like	glycoprotein
NosL	PF05573.7	gi|379004775|ref|YP_005260447.1|	-	0.00035	20.2	0.0	0.00059	19.5	0.0	1.3	1	0	0	1	1	1	1	NosL
NosD	PF05048.8	gi|379004776|ref|YP_005260448.1|	-	1.4e-17	63.6	0.1	2.9e-17	62.6	0.0	1.5	1	1	0	1	1	1	1	Periplasmic	copper-binding	protein	(NosD)
Beta_helix	PF13229.1	gi|379004776|ref|YP_005260448.1|	-	1.6e-15	57.2	5.9	2.5e-12	46.8	0.5	2.5	1	1	2	3	3	3	2	Right	handed	beta	helix	region
ABC_tran	PF00005.22	gi|379004777|ref|YP_005260449.1|	-	1.2e-13	51.5	0.0	1.9e-13	50.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004777|ref|YP_005260449.1|	-	8e-10	39.1	0.1	0.0003	20.8	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379004777|ref|YP_005260449.1|	-	0.00093	19.5	0.0	0.0014	19.0	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004777|ref|YP_005260449.1|	-	0.0015	18.0	0.0	0.0038	16.7	0.0	1.6	2	0	0	2	2	2	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|379004777|ref|YP_005260449.1|	-	0.016	15.0	0.0	0.33	10.8	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|379004777|ref|YP_005260449.1|	-	0.026	13.9	0.1	0.042	13.2	0.0	1.4	1	1	0	1	1	1	0	AAA-like	domain
AAA_22	PF13401.1	gi|379004777|ref|YP_005260449.1|	-	0.065	13.3	0.0	0.11	12.6	0.0	1.4	1	1	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379004777|ref|YP_005260449.1|	-	0.096	12.4	0.0	0.25	11.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|379004777|ref|YP_005260449.1|	-	0.097	12.4	0.1	0.37	10.5	0.0	2.0	2	1	0	2	2	2	0	Part	of	AAA	domain
EPSP_synthase	PF00275.15	gi|379004777|ref|YP_005260449.1|	-	0.13	10.6	0.1	0.18	10.1	0.0	1.2	1	0	0	1	1	1	0	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
DUF3054	PF11255.3	gi|379004779|ref|YP_005260451.1|	-	0.11	12.2	8.1	0.17	11.7	5.6	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3054)
UPF0182	PF03699.8	gi|379004779|ref|YP_005260451.1|	-	4.5	5.0	6.0	5.3	4.8	4.1	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0182)
DUF1206	PF06724.6	gi|379004779|ref|YP_005260451.1|	-	6.9	6.4	17.0	10	5.9	0.1	3.1	2	1	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1206)
Herpes_LMP1	PF05297.6	gi|379004779|ref|YP_005260451.1|	-	7.6	5.3	7.7	8.6	5.1	5.4	1.0	1	0	0	1	1	1	0	Herpesvirus	latent	membrane	protein	1	(LMP1)
FlaC_arch	PF05377.6	gi|379004783|ref|YP_005260455.1|	-	4.5e-05	23.2	1.0	0.013	15.3	0.7	2.7	1	1	2	3	3	3	3	Flagella	accessory	protein	C	(FlaC)
Baculo_PEP_C	PF04513.7	gi|379004783|ref|YP_005260455.1|	-	8.7e-05	22.3	0.1	0.00015	21.6	0.1	1.4	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Prefoldin_2	PF01920.15	gi|379004783|ref|YP_005260455.1|	-	8.8e-05	22.2	0.1	0.027	14.2	0.4	2.4	1	1	1	2	2	2	1	Prefoldin	subunit
CENP-F_leu_zip	PF10473.4	gi|379004783|ref|YP_005260455.1|	-	0.00012	21.9	0.2	0.00025	20.8	0.1	1.5	1	0	0	1	1	1	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Reo_sigmaC	PF04582.7	gi|379004783|ref|YP_005260455.1|	-	0.00013	21.2	0.1	0.00016	20.9	0.0	1.1	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
DUF948	PF06103.6	gi|379004783|ref|YP_005260455.1|	-	0.00014	21.6	0.2	0.0029	17.4	0.2	2.3	1	1	1	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
DUF4618	PF15397.1	gi|379004783|ref|YP_005260455.1|	-	0.00014	21.2	1.8	0.0097	15.2	0.1	2.2	2	1	1	3	3	2	2	Domain	of	unknown	function	(DUF4618)
Myosin_tail_1	PF01576.14	gi|379004783|ref|YP_005260455.1|	-	0.00022	19.1	0.5	0.00029	18.7	0.4	1.1	1	0	0	1	1	1	1	Myosin	tail
PspA_IM30	PF04012.7	gi|379004783|ref|YP_005260455.1|	-	0.00023	20.5	0.1	0.00042	19.7	0.1	1.3	1	0	0	1	1	1	1	PspA/IM30	family
LPP	PF04728.8	gi|379004783|ref|YP_005260455.1|	-	0.00034	20.3	0.2	0.76	9.6	0.0	2.5	1	1	1	2	2	2	2	Lipoprotein	leucine-zipper
DUF1664	PF07889.7	gi|379004783|ref|YP_005260455.1|	-	0.0004	20.1	1.3	0.0007	19.4	0.3	1.7	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF1664)
Nup54	PF13874.1	gi|379004783|ref|YP_005260455.1|	-	0.0005	19.7	0.1	0.00092	18.8	0.1	1.5	1	1	0	1	1	1	1	Nucleoporin	complex	subunit	54
DUF869	PF05911.6	gi|379004783|ref|YP_005260455.1|	-	0.00075	17.8	1.0	0.0011	17.2	0.7	1.1	1	0	0	1	1	1	1	Plant	protein	of	unknown	function	(DUF869)
DUF2730	PF10805.3	gi|379004783|ref|YP_005260455.1|	-	0.00081	19.0	0.4	0.0018	18.0	0.3	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2730)
EzrA	PF06160.7	gi|379004783|ref|YP_005260455.1|	-	0.0009	17.5	0.1	0.0013	17.0	0.0	1.1	1	0	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
TMF_DNA_bd	PF12329.3	gi|379004783|ref|YP_005260455.1|	-	0.001	18.7	2.8	0.0018	18.0	0.8	2.2	2	1	0	2	2	1	1	TATA	element	modulatory	factor	1	DNA	binding
HrpB7	PF09486.5	gi|379004783|ref|YP_005260455.1|	-	0.0011	18.8	1.3	0.0017	18.3	0.4	1.6	2	0	0	2	2	1	1	Bacterial	type	III	secretion	protein	(HrpB7)
Tropomyosin	PF00261.15	gi|379004783|ref|YP_005260455.1|	-	0.0014	17.8	0.5	0.0023	17.0	0.3	1.4	1	0	0	1	1	1	1	Tropomyosin
DUF2937	PF11157.3	gi|379004783|ref|YP_005260455.1|	-	0.0015	17.8	0.0	0.0025	17.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2937)
DUF4164	PF13747.1	gi|379004783|ref|YP_005260455.1|	-	0.0016	18.5	4.0	0.0026	17.8	1.8	2.0	2	0	0	2	2	1	1	Domain	of	unknown	function	(DUF4164)
NPV_P10	PF05531.7	gi|379004783|ref|YP_005260455.1|	-	0.0016	18.6	0.2	0.011	16.0	0.0	2.2	1	1	1	2	2	2	2	Nucleopolyhedrovirus	P10	protein
IncA	PF04156.9	gi|379004783|ref|YP_005260455.1|	-	0.0018	17.9	1.8	0.0046	16.5	1.2	1.6	1	1	0	1	1	1	1	IncA	protein
DivIC	PF04977.10	gi|379004783|ref|YP_005260455.1|	-	0.0019	17.6	5.6	0.0025	17.2	0.3	3.0	2	1	1	3	3	3	1	Septum	formation	initiator
PspB	PF06667.7	gi|379004783|ref|YP_005260455.1|	-	0.0022	17.8	0.9	0.026	14.4	0.3	2.5	1	1	1	2	2	2	1	Phage	shock	protein	B
AAA_13	PF13166.1	gi|379004783|ref|YP_005260455.1|	-	0.0024	16.4	0.3	0.004	15.6	0.0	1.4	2	0	0	2	2	1	1	AAA	domain
COG2	PF06148.6	gi|379004783|ref|YP_005260455.1|	-	0.0028	17.5	3.3	0.016	15.0	0.5	2.8	2	1	1	3	3	3	2	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
CCDC144C	PF14915.1	gi|379004783|ref|YP_005260455.1|	-	0.0043	16.0	0.7	0.0062	15.5	0.5	1.2	1	0	0	1	1	1	1	CCDC144C	protein	coiled-coil	region
MAD	PF05557.8	gi|379004783|ref|YP_005260455.1|	-	0.005	15.0	0.2	0.0056	14.8	0.1	1.1	1	0	0	1	1	1	1	Mitotic	checkpoint	protein
ADIP	PF11559.3	gi|379004783|ref|YP_005260455.1|	-	0.0059	16.5	0.5	0.012	15.5	0.1	1.6	2	0	0	2	2	1	1	Afadin-	and	alpha	-actinin-Binding
TBPIP	PF07106.8	gi|379004783|ref|YP_005260455.1|	-	0.0067	16.0	0.1	0.014	14.9	0.1	1.6	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
bZIP_2	PF07716.10	gi|379004783|ref|YP_005260455.1|	-	0.0077	16.0	1.7	0.95	9.3	0.1	3.5	2	1	1	3	3	3	1	Basic	region	leucine	zipper
GAS	PF13851.1	gi|379004783|ref|YP_005260455.1|	-	0.0086	15.2	0.4	0.043	13.0	0.1	2.1	1	1	1	2	2	2	1	Growth-arrest	specific	micro-tubule	binding
DUF3584	PF12128.3	gi|379004783|ref|YP_005260455.1|	-	0.0087	13.4	0.0	0.012	13.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
BLOC1_2	PF10046.4	gi|379004783|ref|YP_005260455.1|	-	0.009	16.1	1.9	0.047	13.8	0.4	2.5	2	1	1	3	3	2	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
AAA_27	PF13514.1	gi|379004783|ref|YP_005260455.1|	-	0.011	13.4	0.3	0.014	13.1	0.2	1.1	1	0	0	1	1	1	0	AAA	domain
Atg14	PF10186.4	gi|379004783|ref|YP_005260455.1|	-	0.012	14.6	0.1	0.019	13.8	0.1	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Apolipoprotein	PF01442.13	gi|379004783|ref|YP_005260455.1|	-	0.012	15.1	1.8	0.027	13.9	1.3	1.6	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
DUF3086	PF11285.3	gi|379004783|ref|YP_005260455.1|	-	0.014	14.2	0.1	0.021	13.6	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3086)
bZIP_1	PF00170.16	gi|379004783|ref|YP_005260455.1|	-	0.015	15.2	0.7	0.41	10.6	0.2	2.5	1	1	2	3	3	3	0	bZIP	transcription	factor
Seryl_tRNA_N	PF02403.17	gi|379004783|ref|YP_005260455.1|	-	0.016	15.2	0.6	0.15	12.1	0.4	2.3	1	1	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Laminin_II	PF06009.7	gi|379004783|ref|YP_005260455.1|	-	0.016	14.9	1.0	0.03	14.0	0.7	1.4	1	0	0	1	1	1	0	Laminin	Domain	II
DASH_Dad2	PF08654.5	gi|379004783|ref|YP_005260455.1|	-	0.017	15.0	1.4	0.23	11.4	0.3	2.5	2	1	1	3	3	2	0	DASH	complex	subunit	Dad2
Spc7	PF08317.6	gi|379004783|ref|YP_005260455.1|	-	0.019	13.6	0.2	0.032	12.9	0.1	1.4	1	0	0	1	1	1	0	Spc7	kinetochore	protein
Snapin_Pallidin	PF14712.1	gi|379004783|ref|YP_005260455.1|	-	0.019	15.2	0.3	0.046	14.0	0.2	1.7	1	0	0	1	1	1	0	Snapin/Pallidin
MscS_porin	PF12795.2	gi|379004783|ref|YP_005260455.1|	-	0.02	14.2	0.0	0.031	13.6	0.0	1.3	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
SF-assemblin	PF06705.6	gi|379004783|ref|YP_005260455.1|	-	0.02	14.0	1.1	0.024	13.7	0.2	1.6	2	0	0	2	2	1	0	SF-assemblin/beta	giardin
SlyX	PF04102.7	gi|379004783|ref|YP_005260455.1|	-	0.02	15.2	0.2	0.077	13.3	0.1	2.0	1	1	0	1	1	1	0	SlyX
V_ATPase_I	PF01496.14	gi|379004783|ref|YP_005260455.1|	-	0.02	12.7	0.1	0.021	12.7	0.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DASH_Spc34	PF08657.5	gi|379004783|ref|YP_005260455.1|	-	0.021	14.5	0.0	0.037	13.6	0.0	1.4	1	0	0	1	1	1	0	DASH	complex	subunit	Spc34
DUF4200	PF13863.1	gi|379004783|ref|YP_005260455.1|	-	0.022	14.6	0.1	0.045	13.6	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
Syntaxin	PF00804.20	gi|379004783|ref|YP_005260455.1|	-	0.022	14.8	0.1	0.052	13.7	0.1	1.6	1	0	0	1	1	1	0	Syntaxin
Gp-FAR-1	PF05823.7	gi|379004783|ref|YP_005260455.1|	-	0.023	14.6	0.4	0.068	13.1	0.1	1.7	2	0	0	2	2	1	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
Vps53_N	PF04100.7	gi|379004783|ref|YP_005260455.1|	-	0.025	13.3	0.0	0.035	12.8	0.0	1.2	1	0	0	1	1	1	0	Vps53-like,	N-terminal
Hemerythrin	PF01814.18	gi|379004783|ref|YP_005260455.1|	-	0.026	14.7	0.7	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
DUF4446	PF14584.1	gi|379004783|ref|YP_005260455.1|	-	0.026	14.3	0.2	0.055	13.2	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
Filament	PF00038.16	gi|379004783|ref|YP_005260455.1|	-	0.029	13.8	1.4	0.033	13.6	0.2	1.5	2	0	0	2	2	1	0	Intermediate	filament	protein
DUF4472	PF14739.1	gi|379004783|ref|YP_005260455.1|	-	0.029	14.8	0.1	0.049	14.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4472)
Matrilin_ccoil	PF10393.4	gi|379004783|ref|YP_005260455.1|	-	0.029	13.7	0.5	4.1	6.8	0.0	2.6	2	1	0	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
HSBP1	PF06825.7	gi|379004783|ref|YP_005260455.1|	-	0.031	13.8	0.3	2.6	7.6	0.0	3.2	1	1	2	3	3	3	0	Heat	shock	factor	binding	protein	1
WEMBL	PF05701.6	gi|379004783|ref|YP_005260455.1|	-	0.034	12.6	1.2	0.035	12.5	0.3	1.4	2	0	0	2	2	1	0	Weak	chloroplast	movement	under	blue	light
CALCOCO1	PF07888.6	gi|379004783|ref|YP_005260455.1|	-	0.038	12.3	0.1	0.054	11.7	0.0	1.2	1	0	0	1	1	1	0	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Cast	PF10174.4	gi|379004783|ref|YP_005260455.1|	-	0.039	12.0	0.4	0.052	11.6	0.3	1.1	1	0	0	1	1	1	0	RIM-binding	protein	of	the	cytomatrix	active	zone
Med9	PF07544.8	gi|379004783|ref|YP_005260455.1|	-	0.043	13.5	1.5	0.099	12.3	0.7	1.8	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
DUF972	PF06156.8	gi|379004783|ref|YP_005260455.1|	-	0.045	14.1	0.1	0.11	12.8	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
GOLGA2L5	PF15070.1	gi|379004783|ref|YP_005260455.1|	-	0.048	12.1	0.1	0.063	11.7	0.0	1.2	1	0	0	1	1	1	0	Putative	golgin	subfamily	A	member	2-like	protein	5
APG6	PF04111.7	gi|379004783|ref|YP_005260455.1|	-	0.048	12.7	0.0	0.068	12.2	0.0	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
IFT57	PF10498.4	gi|379004783|ref|YP_005260455.1|	-	0.056	12.1	0.0	0.087	11.5	0.0	1.3	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
Fzo_mitofusin	PF04799.8	gi|379004783|ref|YP_005260455.1|	-	0.057	12.8	0.1	0.098	12.0	0.1	1.4	1	0	0	1	1	1	0	fzo-like	conserved	region
YscO	PF07321.7	gi|379004783|ref|YP_005260455.1|	-	0.059	13.1	1.2	0.13	12.0	0.6	1.6	1	1	0	1	1	1	0	Type	III	secretion	protein	YscO
Fib_alpha	PF08702.5	gi|379004783|ref|YP_005260455.1|	-	0.06	13.4	0.4	0.26	11.4	0.1	2.1	1	1	1	2	2	1	0	Fibrinogen	alpha/beta	chain	family
Laminin_I	PF06008.9	gi|379004783|ref|YP_005260455.1|	-	0.067	12.5	0.0	0.1	11.9	0.0	1.2	1	0	0	1	1	1	0	Laminin	Domain	I
NTR2	PF15458.1	gi|379004783|ref|YP_005260455.1|	-	0.067	12.4	0.4	0.11	11.7	0.3	1.3	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
Occludin_ELL	PF07303.8	gi|379004783|ref|YP_005260455.1|	-	0.067	13.9	1.8	4.6	8.0	0.1	3.0	2	1	1	3	3	3	0	Occludin	homology	domain
TelA	PF05816.6	gi|379004783|ref|YP_005260455.1|	-	0.069	11.8	2.0	0.78	8.3	0.2	2.5	2	1	1	3	3	3	0	Toxic	anion	resistance	protein	(TelA)
Prominin	PF05478.6	gi|379004783|ref|YP_005260455.1|	-	0.069	10.6	0.0	0.073	10.6	0.0	1.2	1	0	0	1	1	1	0	Prominin
ISG65-75	PF11727.3	gi|379004783|ref|YP_005260455.1|	-	0.07	12.1	0.9	0.14	11.1	0.2	1.6	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
STAT_alpha	PF01017.15	gi|379004783|ref|YP_005260455.1|	-	0.07	12.8	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	STAT	protein,	all-alpha	domain
Tropomyosin_1	PF12718.2	gi|379004783|ref|YP_005260455.1|	-	0.072	12.9	0.2	0.13	12.0	0.1	1.5	1	0	0	1	1	1	0	Tropomyosin	like
Striatin	PF08232.7	gi|379004783|ref|YP_005260455.1|	-	0.073	13.3	1.3	0.23	11.7	0.7	1.9	1	1	0	1	1	1	0	Striatin	family
Herpes_U30	PF04523.8	gi|379004783|ref|YP_005260455.1|	-	0.073	10.5	0.0	0.18	9.2	0.0	1.5	2	0	0	2	2	2	0	Herpes	virus	tegument	protein	U30
CorA	PF01544.13	gi|379004783|ref|YP_005260455.1|	-	0.076	12.0	1.4	0.12	11.4	0.4	1.8	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
PilJ	PF13675.1	gi|379004783|ref|YP_005260455.1|	-	0.077	13.3	0.0	0.19	12.0	0.0	1.7	1	0	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
CCDC-167	PF15188.1	gi|379004783|ref|YP_005260455.1|	-	0.077	12.9	0.7	0.28	11.1	0.5	2.1	1	1	0	1	1	1	0	Coiled-coil	domain-containing	protein	167
Bacillus_HBL	PF05791.6	gi|379004783|ref|YP_005260455.1|	-	0.081	12.2	1.1	0.33	10.3	0.1	2.1	2	1	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
Macoilin	PF09726.4	gi|379004783|ref|YP_005260455.1|	-	0.089	11.0	0.2	0.12	10.6	0.1	1.1	1	0	0	1	1	1	0	Transmembrane	protein
COG5	PF10392.4	gi|379004783|ref|YP_005260455.1|	-	0.095	12.6	0.6	0.41	10.6	0.2	2.1	2	1	0	2	2	1	0	Golgi	transport	complex	subunit	5
DUF2205	PF10224.4	gi|379004783|ref|YP_005260455.1|	-	0.096	12.2	2.2	0.83	9.2	1.0	2.6	1	1	1	2	2	2	0	Predicted	coiled-coil	protein	(DUF2205)
Syntaxin-6_N	PF09177.6	gi|379004783|ref|YP_005260455.1|	-	0.1	13.0	1.0	0.38	11.1	0.1	2.3	2	1	0	2	2	1	0	Syntaxin	6,	N-terminal
Mpp10	PF04006.7	gi|379004783|ref|YP_005260455.1|	-	0.11	10.7	0.1	0.11	10.7	0.1	1.4	2	0	0	2	2	1	0	Mpp10	protein
BRE1	PF08647.6	gi|379004783|ref|YP_005260455.1|	-	0.13	12.2	0.6	0.42	10.6	0.2	1.9	1	1	1	2	2	1	0	BRE1	E3	ubiquitin	ligase
XhlA	PF10779.4	gi|379004783|ref|YP_005260455.1|	-	0.13	12.1	1.2	0.81	9.6	0.5	2.2	1	1	1	2	2	2	0	Haemolysin	XhlA
DUF16	PF01519.11	gi|379004783|ref|YP_005260455.1|	-	0.14	12.4	0.3	0.31	11.2	0.2	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF16
EMP24_GP25L	PF01105.19	gi|379004783|ref|YP_005260455.1|	-	0.15	11.7	0.3	0.59	9.8	0.2	1.9	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
MbeD_MobD	PF04899.7	gi|379004783|ref|YP_005260455.1|	-	0.15	11.9	0.3	4.3	7.2	0.3	2.3	1	1	1	2	2	2	0	MbeD/MobD	like
Phasin	PF05597.6	gi|379004783|ref|YP_005260455.1|	-	0.16	11.7	2.1	1.5	8.5	1.3	2.4	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Hemagglutinin	PF00509.13	gi|379004783|ref|YP_005260455.1|	-	0.17	10.0	0.1	0.46	8.5	0.0	1.7	1	1	0	1	1	1	0	Haemagglutinin
ATG16	PF08614.6	gi|379004783|ref|YP_005260455.1|	-	0.2	11.4	2.4	0.1	12.3	0.3	1.5	2	0	0	2	2	1	0	Autophagy	protein	16	(ATG16)
Prefoldin	PF02996.12	gi|379004783|ref|YP_005260455.1|	-	0.27	10.8	3.7	0.3	10.7	0.2	2.6	2	2	0	2	2	2	0	Prefoldin	subunit
GDPD	PF03009.12	gi|379004784|ref|YP_005260456.1|	-	1.7e-34	119.5	0.6	1.2e-23	83.9	0.0	2.1	1	1	0	2	2	2	2	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|379004784|ref|YP_005260456.1|	-	5.9e-06	26.3	3.1	1.4e-05	25.1	1.5	2.1	2	0	0	2	2	2	1	Glycerophosphoryl	diester	phosphodiesterase	family
CbiC	PF02570.10	gi|379004784|ref|YP_005260456.1|	-	0.1	11.9	0.6	4.2	6.7	0.1	2.1	1	1	0	2	2	2	0	Precorrin-8X	methylmutase
ThiF	PF00899.16	gi|379004785|ref|YP_005260457.1|	-	3.7e-43	146.6	0.1	4.9e-43	146.2	0.1	1.2	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|379004785|ref|YP_005260457.1|	-	1.3e-18	66.3	0.1	2.4e-18	65.5	0.0	1.5	1	0	0	1	1	1	1	MoeZ/MoeB	domain
Saccharop_dh	PF03435.13	gi|379004785|ref|YP_005260457.1|	-	0.0095	14.9	0.1	0.015	14.3	0.1	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|379004785|ref|YP_005260457.1|	-	0.012	14.7	0.9	0.087	11.9	0.6	2.1	1	1	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Nitrate_red_del	PF02613.10	gi|379004786|ref|YP_005260458.1|	-	7.7e-19	67.8	0.1	9.7e-19	67.5	0.1	1.1	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
PaREP1	PF05942.6	gi|379004787|ref|YP_005260459.1|	-	6.1e-28	96.9	1.0	8e-28	96.6	0.2	1.5	1	1	1	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DUF3100	PF11299.3	gi|379004787|ref|YP_005260459.1|	-	0.047	12.9	0.0	0.081	12.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3100)
TPR_20	PF14561.1	gi|379004787|ref|YP_005260459.1|	-	0.24	11.5	2.0	0.2	11.7	0.5	1.5	2	0	0	2	2	2	0	Tetratricopeptide	repeat
PaREP1	PF05942.6	gi|379004788|ref|YP_005260460.1|	-	1e-26	93.0	1.4	1.4e-26	92.6	1.0	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379004788|ref|YP_005260460.1|	-	0.043	13.7	1.1	0.064	13.1	0.7	1.4	1	0	0	1	1	1	0	HEPN	domain
E1-E2_ATPase	PF00122.15	gi|379004789|ref|YP_005260461.1|	-	1.3e-58	197.7	0.0	5.4e-58	195.7	0.0	2.0	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|379004789|ref|YP_005260461.1|	-	2.8e-44	152.1	3.1	3.4e-44	151.8	1.4	1.8	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|379004789|ref|YP_005260461.1|	-	1e-16	61.7	0.0	5.1e-16	59.4	0.0	2.1	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|379004789|ref|YP_005260461.1|	-	1.8e-16	59.9	0.6	1.1e-10	41.4	0.0	4.0	4	0	0	4	4	4	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.7	gi|379004789|ref|YP_005260461.1|	-	3.1e-07	30.2	0.4	0.00036	20.2	0.2	2.3	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
SPOR	PF05036.8	gi|379004789|ref|YP_005260461.1|	-	0.00092	19.3	1.0	0.026	14.6	0.0	3.8	4	0	0	4	4	4	1	Sporulation	related	domain
PepSY_2	PF13670.1	gi|379004789|ref|YP_005260461.1|	-	0.029	14.2	5.0	0.067	13.1	0.1	4.0	4	0	0	4	4	4	0	Peptidase	propeptide	and	YPEB	domain
Thioredoxin_2	PF13098.1	gi|379004790|ref|YP_005260462.1|	-	2.9e-07	30.6	0.0	7.7e-07	29.3	0.0	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
DUF1247	PF06851.6	gi|379004790|ref|YP_005260462.1|	-	0.13	11.9	0.1	0.2	11.2	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1247)
DUF411	PF04214.8	gi|379004791|ref|YP_005260463.1|	-	1e-15	56.9	0.0	1.6e-15	56.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF
TrmB	PF01978.14	gi|379004792|ref|YP_005260464.1|	-	0.00088	18.9	0.2	0.0013	18.3	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379004792|ref|YP_005260464.1|	-	0.011	15.4	0.2	0.019	14.6	0.1	1.4	1	0	0	1	1	1	0	MarR	family
Phage_terminase	PF10668.4	gi|379004792|ref|YP_005260464.1|	-	0.011	15.4	0.1	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Phage	terminase	small	subunit
Laminin_II	PF06009.7	gi|379004792|ref|YP_005260464.1|	-	0.019	14.6	0.0	0.028	14.1	0.0	1.1	1	0	0	1	1	1	0	Laminin	Domain	II
DUF603	PF04645.7	gi|379004792|ref|YP_005260464.1|	-	0.14	12.0	0.0	0.19	11.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF603
DUF2874	PF11396.3	gi|379004793|ref|YP_005260465.1|	-	0.00094	19.1	0.6	0.086	12.8	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2874)
Pyr_redox_2	PF07992.9	gi|379004794|ref|YP_005260466.1|	-	3.7e-32	111.8	0.0	5.7e-32	111.2	0.0	1.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379004794|ref|YP_005260466.1|	-	1.9e-20	73.8	0.6	1.3e-15	58.0	0.0	2.5	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379004794|ref|YP_005260466.1|	-	1.4e-18	67.0	1.9	2e-12	47.3	0.0	3.4	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004794|ref|YP_005260466.1|	-	1.2e-11	44.1	11.5	1.4e-05	24.1	1.0	4.6	2	2	3	5	5	5	2	FAD	binding	domain
GIDA	PF01134.17	gi|379004794|ref|YP_005260466.1|	-	9.9e-09	34.5	6.1	0.00017	20.6	1.0	4.0	4	0	0	4	4	4	3	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|379004794|ref|YP_005260466.1|	-	2.9e-08	33.0	4.0	0.0014	17.5	0.9	3.2	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|379004794|ref|YP_005260466.1|	-	5.4e-08	32.3	0.1	5.4e-08	32.3	0.1	2.6	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379004794|ref|YP_005260466.1|	-	1.1e-06	27.3	3.8	0.0017	16.9	0.5	3.4	4	0	0	4	4	4	2	HI0933-like	protein
FAD_binding_3	PF01494.14	gi|379004794|ref|YP_005260466.1|	-	3.1e-06	26.5	1.6	0.0095	15.0	0.4	2.2	2	0	0	2	2	2	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|379004794|ref|YP_005260466.1|	-	1.3e-05	25.1	0.8	0.0012	18.8	0.1	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_7	PF13241.1	gi|379004794|ref|YP_005260466.1|	-	1.3e-05	25.4	0.5	0.008	16.4	0.1	2.3	2	0	0	2	2	2	2	Putative	NAD(P)-binding
Thi4	PF01946.12	gi|379004794|ref|YP_005260466.1|	-	4e-05	22.8	0.9	0.0011	18.1	0.1	2.7	3	0	0	3	3	3	1	Thi4	family
Lycopene_cycl	PF05834.7	gi|379004794|ref|YP_005260466.1|	-	0.00052	19.0	1.0	0.37	9.6	0.2	3.0	2	1	1	3	3	3	1	Lycopene	cyclase	protein
K_oxygenase	PF13434.1	gi|379004794|ref|YP_005260466.1|	-	0.0096	14.8	0.3	0.21	10.4	0.0	2.7	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
Shikimate_DH	PF01488.15	gi|379004794|ref|YP_005260466.1|	-	0.032	14.3	0.4	0.22	11.5	0.0	2.1	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_9	PF13454.1	gi|379004794|ref|YP_005260466.1|	-	0.072	12.8	2.2	3.3	7.4	0.0	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|379004794|ref|YP_005260466.1|	-	0.1	11.2	2.5	2.2	6.8	0.4	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
AlaDh_PNT_C	PF01262.16	gi|379004794|ref|YP_005260466.1|	-	0.13	11.8	0.5	5.3	6.5	0.2	2.3	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lyase_1	PF00206.15	gi|379004795|ref|YP_005260467.1|	-	3e-84	282.8	0.0	3.7e-84	282.5	0.0	1.1	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|379004795|ref|YP_005260467.1|	-	6.4e-09	35.7	0.0	1.9e-08	34.2	0.0	1.9	1	0	0	1	1	1	1	Fumarase	C	C-terminus
PIN	PF01850.16	gi|379004796|ref|YP_005260468.1|	-	2.4e-15	56.9	0.2	2.8e-15	56.7	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
HTH_32	PF13565.1	gi|379004797|ref|YP_005260469.1|	-	0.017	15.8	0.3	1.5	9.6	0.0	2.1	1	1	1	2	2	2	0	Homeodomain-like	domain
PaREP1	PF05942.6	gi|379004798|ref|YP_005260470.1|	-	1.9e-34	117.9	0.1	2.3e-34	117.7	0.1	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Aldedh	PF00171.17	gi|379004799|ref|YP_005260471.1|	-	1.4e-122	409.3	0.0	1.7e-122	409.0	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|379004799|ref|YP_005260471.1|	-	9e-06	24.6	0.0	1.4e-05	23.9	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
Fer4	PF00037.22	gi|379004800|ref|YP_005260472.1|	-	2.4e-10	39.5	11.4	2.2e-07	30.1	3.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379004800|ref|YP_005260472.1|	-	7e-10	38.3	12.4	1.6e-07	30.8	2.3	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379004800|ref|YP_005260472.1|	-	1.4e-09	38.1	4.6	2.1e-09	37.5	3.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004800|ref|YP_005260472.1|	-	2.4e-07	30.9	5.7	4.6e-07	29.9	4.0	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004800|ref|YP_005260472.1|	-	2.4e-07	30.4	6.9	1.1e-06	28.2	5.2	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004800|ref|YP_005260472.1|	-	5.5e-07	29.1	8.6	4.6e-05	23.1	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004800|ref|YP_005260472.1|	-	2.4e-06	28.1	5.6	0.0033	18.1	0.9	2.2	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|379004800|ref|YP_005260472.1|	-	1.8e-05	24.7	8.9	0.0013	18.8	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004800|ref|YP_005260472.1|	-	1.9e-05	24.8	13.0	0.018	15.5	4.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004800|ref|YP_005260472.1|	-	4.2e-05	23.3	5.6	6.9e-05	22.6	3.9	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004800|ref|YP_005260472.1|	-	6.8e-05	23.2	3.4	0.033	14.6	1.3	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379004800|ref|YP_005260472.1|	-	0.00013	21.9	7.1	0.0013	18.6	5.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004800|ref|YP_005260472.1|	-	0.00014	22.1	5.9	0.003	17.8	0.7	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|379004800|ref|YP_005260472.1|	-	0.005	16.6	1.7	0.15	11.9	0.1	1.9	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379004800|ref|YP_005260472.1|	-	0.0084	16.4	1.2	0.0084	16.4	0.9	2.4	2	1	1	3	3	3	1	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|379004800|ref|YP_005260472.1|	-	0.0095	16.4	9.2	0.14	12.7	6.3	2.3	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
GSDH	PF07995.6	gi|379004801|ref|YP_005260473.1|	-	3.3e-86	289.3	0.0	4.2e-86	289.0	0.0	1.1	1	0	0	1	1	1	1	Glucose	/	Sorbosone	dehydrogenase
Glyoxalase	PF00903.20	gi|379004802|ref|YP_005260474.1|	-	6.5e-10	39.0	0.2	3.4e-05	23.8	0.0	2.7	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|379004802|ref|YP_005260474.1|	-	1e-09	38.9	0.1	6e-05	23.6	0.0	2.3	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_3	PF13468.1	gi|379004802|ref|YP_005260474.1|	-	0.0076	16.1	0.1	4.4	7.1	0.0	2.5	3	0	0	3	3	3	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|379004802|ref|YP_005260474.1|	-	0.012	15.5	0.0	7.4	6.6	0.0	2.8	2	1	0	2	2	2	0	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
VIT1	PF01988.14	gi|379004803|ref|YP_005260475.1|	-	0.27	10.6	8.3	0.31	10.5	5.7	1.0	1	0	0	1	1	1	0	VIT	family
Hemerythrin	PF01814.18	gi|379004804|ref|YP_005260476.1|	-	7.1e-20	71.5	0.2	1.5e-19	70.4	0.0	1.5	2	0	0	2	2	2	1	Hemerythrin	HHE	cation	binding	domain
HTH_27	PF13463.1	gi|379004805|ref|YP_005260477.1|	-	3.1e-13	49.8	0.2	1.1e-10	41.6	0.1	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|379004805|ref|YP_005260477.1|	-	1.4e-12	47.0	1.9	2.2e-11	43.2	0.2	2.9	2	1	1	3	3	3	1	MarR	family
HTH_5	PF01022.15	gi|379004805|ref|YP_005260477.1|	-	6.9e-12	44.8	0.1	3.2e-11	42.7	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|379004805|ref|YP_005260477.1|	-	4.6e-11	42.2	0.1	1.4e-09	37.5	0.0	2.6	2	1	1	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|379004805|ref|YP_005260477.1|	-	2.6e-09	36.8	0.2	7.5e-09	35.3	0.1	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_IclR	PF09339.5	gi|379004805|ref|YP_005260477.1|	-	3.9e-09	35.9	0.6	3.3e-07	29.7	0.1	3.0	3	0	0	3	3	3	1	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|379004805|ref|YP_005260477.1|	-	2.2e-08	33.6	0.1	1e-07	31.5	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|379004805|ref|YP_005260477.1|	-	3.2e-08	32.8	0.2	1.4e-07	30.7	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|379004805|ref|YP_005260477.1|	-	6e-07	29.1	0.8	4.8e-06	26.2	0.0	2.3	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|379004805|ref|YP_005260477.1|	-	1.2e-06	28.4	0.1	1.7e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|379004805|ref|YP_005260477.1|	-	1.7e-06	27.8	0.8	0.00011	22.1	0.0	3.2	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|379004805|ref|YP_005260477.1|	-	2e-06	27.3	0.1	4.8e-06	26.1	0.1	1.6	1	0	0	1	1	1	1	HTH	domain
Rrf2	PF02082.15	gi|379004805|ref|YP_005260477.1|	-	8e-06	25.8	0.3	0.00011	22.2	0.1	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
FeoC	PF09012.5	gi|379004805|ref|YP_005260477.1|	-	3.4e-05	23.4	0.1	8.2e-05	22.2	0.0	1.6	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
LexA_DNA_bind	PF01726.11	gi|379004805|ref|YP_005260477.1|	-	6.7e-05	22.3	0.1	0.00012	21.5	0.0	1.5	1	0	0	1	1	1	1	LexA	DNA	binding	domain
GntR	PF00392.16	gi|379004805|ref|YP_005260477.1|	-	0.00015	21.1	0.3	0.00038	19.8	0.1	1.8	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_AsnC-type	PF13404.1	gi|379004805|ref|YP_005260477.1|	-	0.00025	20.5	0.2	0.00091	18.7	0.1	2.0	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|379004805|ref|YP_005260477.1|	-	0.00027	20.4	0.6	0.0015	18.1	0.0	2.5	3	1	0	3	3	2	1	Homeodomain-like	domain
HTH_DeoR	PF08220.7	gi|379004805|ref|YP_005260477.1|	-	0.00028	20.3	0.0	0.00059	19.3	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.7	gi|379004805|ref|YP_005260477.1|	-	0.00034	20.1	0.1	0.001	18.5	0.1	1.9	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|379004805|ref|YP_005260477.1|	-	0.00043	20.4	0.3	0.00073	19.6	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_45	PF14947.1	gi|379004805|ref|YP_005260477.1|	-	0.00067	19.4	0.0	0.022	14.5	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_36	PF13730.1	gi|379004805|ref|YP_005260477.1|	-	0.00083	19.4	0.4	0.004	17.2	0.0	2.2	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|379004805|ref|YP_005260477.1|	-	0.0015	18.0	0.4	0.0076	15.7	0.0	2.3	3	0	0	3	3	3	1	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|379004805|ref|YP_005260477.1|	-	0.0021	17.7	0.1	0.0087	15.8	0.0	2.0	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|379004805|ref|YP_005260477.1|	-	0.005	16.1	0.0	0.024	13.9	0.0	2.0	2	0	0	2	2	2	1	Sigma-70,	region	4
CENP-B_N	PF04218.8	gi|379004805|ref|YP_005260477.1|	-	0.0054	16.1	0.0	0.065	12.6	0.0	2.1	2	0	0	2	2	2	1	CENP-B	N-terminal	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|379004805|ref|YP_005260477.1|	-	0.0077	15.3	0.1	0.027	13.6	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_1	PF00126.22	gi|379004805|ref|YP_005260477.1|	-	0.008	15.8	1.5	0.008	15.8	1.0	2.2	2	1	0	2	2	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Ftsk_gamma	PF09397.5	gi|379004805|ref|YP_005260477.1|	-	0.0085	15.7	0.5	0.019	14.6	0.2	1.6	2	0	0	2	2	1	1	Ftsk	gamma	domain
DUF4423	PF14394.1	gi|379004805|ref|YP_005260477.1|	-	0.0088	15.6	0.0	0.012	15.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_7	PF02796.10	gi|379004805|ref|YP_005260477.1|	-	0.0089	15.8	0.3	0.033	14.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
HxlR	PF01638.12	gi|379004805|ref|YP_005260477.1|	-	0.014	15.0	0.0	0.02	14.4	0.0	1.3	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF2250	PF10007.4	gi|379004805|ref|YP_005260477.1|	-	0.02	14.7	0.0	0.21	11.4	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sigma70_r4_2	PF08281.7	gi|379004805|ref|YP_005260477.1|	-	0.027	13.9	0.2	0.095	12.1	0.0	2.0	2	0	0	2	2	2	0	Sigma-70,	region	4
GerE	PF00196.14	gi|379004805|ref|YP_005260477.1|	-	0.035	13.4	0.0	0.074	12.3	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_9	PF08221.6	gi|379004805|ref|YP_005260477.1|	-	0.047	13.5	0.1	0.25	11.2	0.0	2.1	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
EAP30	PF04157.11	gi|379004805|ref|YP_005260477.1|	-	0.049	12.7	0.1	0.07	12.2	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
DUF2582	PF10771.4	gi|379004805|ref|YP_005260477.1|	-	0.063	13.1	0.2	0.2	11.5	0.0	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2582)
DUF2089	PF09862.4	gi|379004805|ref|YP_005260477.1|	-	0.068	12.9	0.0	0.099	12.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
TetR_N	PF00440.18	gi|379004805|ref|YP_005260477.1|	-	0.071	12.7	0.1	0.16	11.6	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
HTH_40	PF14493.1	gi|379004805|ref|YP_005260477.1|	-	0.073	13.2	0.0	0.11	12.7	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
PadR	PF03551.9	gi|379004805|ref|YP_005260477.1|	-	0.11	12.3	0.0	0.2	11.4	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Arch_ATPase	PF01637.13	gi|379004806|ref|YP_005260478.1|	-	1.4e-32	113.3	0.1	3.7e-32	111.9	0.0	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|379004806|ref|YP_005260478.1|	-	6.9e-08	32.6	0.2	6.9e-08	32.6	0.2	2.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|379004806|ref|YP_005260478.1|	-	1.9e-07	30.9	0.0	0.0062	16.4	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|379004806|ref|YP_005260478.1|	-	3.6e-07	30.3	0.2	4.4e-06	26.8	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
HTH_20	PF12840.2	gi|379004806|ref|YP_005260478.1|	-	0.056	13.2	0.7	0.24	11.2	0.3	2.3	1	1	1	2	2	2	0	Helix-turn-helix	domain
NB-ARC	PF00931.17	gi|379004806|ref|YP_005260478.1|	-	0.13	11.1	0.0	0.31	9.8	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
DUF258	PF03193.11	gi|379004806|ref|YP_005260478.1|	-	0.15	11.2	0.0	1	8.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|379004806|ref|YP_005260478.1|	-	0.18	12.3	0.0	2.3	8.7	0.0	2.4	2	0	0	2	2	2	0	Miro-like	protein
AAA_10	PF12846.2	gi|379004806|ref|YP_005260478.1|	-	0.26	10.6	1.2	44	3.3	0.0	3.1	2	1	0	3	3	3	0	AAA-like	domain
COX1	PF00115.15	gi|379004807|ref|YP_005260479.1|	-	7.4e-21	74.2	54.1	7.4e-21	74.2	37.5	2.3	3	0	0	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
PMT_2	PF13231.1	gi|379004808|ref|YP_005260480.1|	-	0.031	14.1	2.8	0.035	13.9	1.9	1.1	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF3815	PF12821.2	gi|379004808|ref|YP_005260480.1|	-	0.09	12.7	1.4	0.1	12.4	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3815)
ABC2_membrane_4	PF12730.2	gi|379004808|ref|YP_005260480.1|	-	0.23	10.6	4.4	0.22	10.6	3.0	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
UbiA	PF01040.13	gi|379004808|ref|YP_005260480.1|	-	0.23	10.6	5.6	0.28	10.3	3.9	1.2	1	0	0	1	1	1	0	UbiA	prenyltransferase	family
DUF2975	PF11188.3	gi|379004808|ref|YP_005260480.1|	-	0.58	9.8	3.4	0.76	9.4	2.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2975)
FeoB_C	PF07664.7	gi|379004808|ref|YP_005260480.1|	-	1.6	8.2	7.9	2.1	7.8	2.1	2.1	1	1	1	2	2	2	0	Ferrous	iron	transport	protein	B	C	terminus
Molybdopterin	PF00384.17	gi|379004811|ref|YP_005260483.1|	-	1.3e-130	435.9	0.0	2.8e-68	230.6	0.0	2.1	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|379004811|ref|YP_005260483.1|	-	1.2e-21	76.5	0.1	3e-21	75.3	0.1	1.7	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Nitr_red_alph_N	PF14710.1	gi|379004811|ref|YP_005260483.1|	-	2.6e-05	24.3	2.0	6.7e-05	23.0	1.4	1.8	1	0	0	1	1	1	1	Respiratory	nitrate	reductase	alpha	N-terminal
Molybdop_Fe4S4	PF04879.11	gi|379004811|ref|YP_005260483.1|	-	0.0076	16.0	0.0	0.019	14.7	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
TAT_signal	PF10518.4	gi|379004811|ref|YP_005260483.1|	-	0.087	12.8	1.9	0.31	11.1	1.3	2.0	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Orn_Arg_deC_N	PF02784.11	gi|379004811|ref|YP_005260483.1|	-	0.26	10.4	0.0	0.41	9.8	0.0	1.2	1	0	0	1	1	1	0	Pyridoxal-dependent	decarboxylase,	pyridoxal	binding	domain
Fer4_11	PF13247.1	gi|379004812|ref|YP_005260484.1|	-	4.8e-36	122.6	8.5	4.8e-36	122.6	5.9	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Nitr_red_bet_C	PF14711.1	gi|379004812|ref|YP_005260484.1|	-	6.5e-22	76.8	0.0	1.1e-21	76.1	0.0	1.4	1	0	0	1	1	1	1	Respiratory	nitrate	reductase	beta	C-terminal
Fer4_7	PF12838.2	gi|379004812|ref|YP_005260484.1|	-	5.1e-08	33.1	19.5	1.5e-06	28.4	4.5	3.2	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004812|ref|YP_005260484.1|	-	1.9e-07	30.7	19.1	1.6e-05	24.5	3.6	2.9	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004812|ref|YP_005260484.1|	-	1.4e-05	24.6	20.6	0.0028	17.4	1.9	4.1	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379004812|ref|YP_005260484.1|	-	0.00056	19.6	21.8	0.076	12.9	0.9	3.9	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379004812|ref|YP_005260484.1|	-	0.00061	20.3	12.1	0.032	14.8	0.2	3.6	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_9	PF13187.1	gi|379004812|ref|YP_005260484.1|	-	0.0013	18.9	21.9	0.13	12.5	6.1	3.4	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379004812|ref|YP_005260484.1|	-	0.0013	19.0	6.5	0.051	13.9	0.1	3.2	3	0	0	3	3	3	2	4Fe-4S	single	cluster	domain
Fer4_8	PF13183.1	gi|379004812|ref|YP_005260484.1|	-	0.0027	17.7	10.6	0.098	12.7	0.1	2.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379004812|ref|YP_005260484.1|	-	0.0038	17.0	18.8	0.078	12.8	1.3	2.8	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004812|ref|YP_005260484.1|	-	0.006	16.1	19.6	0.027	14.0	1.7	4.6	4	0	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379004812|ref|YP_005260484.1|	-	0.099	13.0	17.1	0.26	11.6	0.1	3.6	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004812|ref|YP_005260484.1|	-	2.2	8.8	25.1	1.2	9.6	1.6	3.7	4	0	0	4	4	3	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004812|ref|YP_005260484.1|	-	3.1	8.5	16.4	23	5.8	0.1	3.5	2	1	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|379004812|ref|YP_005260484.1|	-	9	7.1	32.9	0.22	12.1	3.4	3.9	4	0	0	4	4	3	0	4Fe-4S	binding	domain
EB_dh	PF09459.5	gi|379004813|ref|YP_005260485.1|	-	1.4e-29	103.3	0.0	4.3e-29	101.7	0.0	1.8	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
DUF1469	PF07332.6	gi|379004813|ref|YP_005260485.1|	-	2.2	8.0	14.4	3.4	7.4	2.3	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
CCG	PF02754.11	gi|379004816|ref|YP_005260488.1|	-	1e-08	35.0	0.0	5.6e-05	23.0	0.0	2.5	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|379004817|ref|YP_005260489.1|	-	1.9e-10	40.6	4.9	2.4e-10	40.2	3.4	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004817|ref|YP_005260489.1|	-	4e-09	36.7	4.1	5.2e-09	36.3	2.9	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004817|ref|YP_005260489.1|	-	5.4e-08	32.5	17.2	6.1e-07	29.1	4.8	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004817|ref|YP_005260489.1|	-	7.3e-07	29.4	7.3	1.4e-06	28.6	5.1	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004817|ref|YP_005260489.1|	-	4e-06	26.1	14.3	0.00019	20.8	1.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004817|ref|YP_005260489.1|	-	8.3e-05	22.7	9.6	0.00081	19.6	6.9	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|379004817|ref|YP_005260489.1|	-	0.00012	21.6	4.3	0.0071	15.9	0.2	2.1	2	0	0	2	2	2	2	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_18	PF13746.1	gi|379004817|ref|YP_005260489.1|	-	0.00016	22.0	10.5	0.00028	21.2	0.9	2.1	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|379004817|ref|YP_005260489.1|	-	0.00016	21.4	4.6	0.06	13.2	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004817|ref|YP_005260489.1|	-	0.00034	20.3	12.6	0.03	14.2	1.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004817|ref|YP_005260489.1|	-	0.00045	20.8	5.8	0.00092	19.9	4.0	1.5	1	1	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_6	PF12837.2	gi|379004817|ref|YP_005260489.1|	-	0.0011	18.7	1.5	0.0011	18.7	1.0	2.4	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379004817|ref|YP_005260489.1|	-	0.013	16.0	5.8	0.75	10.3	0.2	2.1	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|379004817|ref|YP_005260489.1|	-	0.16	12.3	12.3	0.74	10.3	1.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|379004817|ref|YP_005260489.1|	-	0.49	10.8	10.6	1.3	9.4	1.4	2.2	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
zf-ribbon_3	PF13248.1	gi|379004817|ref|YP_005260489.1|	-	0.64	9.2	10.7	2.2	7.5	0.7	2.8	2	1	0	2	2	2	0	zinc-ribbon	domain
Fer4_3	PF12798.2	gi|379004817|ref|YP_005260489.1|	-	1.1	9.9	16.9	0.87	10.2	1.4	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
A2L_zn_ribbon	PF08792.5	gi|379004817|ref|YP_005260489.1|	-	2.2	7.8	9.7	6	6.4	0.2	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
CCG	PF02754.11	gi|379004818|ref|YP_005260490.1|	-	5e-19	68.1	0.0	1.1e-09	38.2	0.0	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|379004818|ref|YP_005260490.1|	-	4.1e-12	45.9	3.7	1e-11	44.6	2.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004818|ref|YP_005260490.1|	-	2.3e-11	43.8	5.0	3.1e-11	43.4	2.6	1.9	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004818|ref|YP_005260490.1|	-	3.8e-09	36.7	4.1	8.4e-09	35.6	2.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004818|ref|YP_005260490.1|	-	5.1e-07	29.0	10.6	0.00045	19.7	0.8	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379004818|ref|YP_005260490.1|	-	8.7e-07	28.6	6.1	0.0003	20.5	6.0	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004818|ref|YP_005260490.1|	-	4e-06	26.4	9.0	0.0062	16.3	0.9	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|379004818|ref|YP_005260490.1|	-	1.1e-05	25.7	4.2	0.0091	16.4	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004818|ref|YP_005260490.1|	-	7.9e-05	22.3	11.5	0.029	14.2	1.3	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004818|ref|YP_005260490.1|	-	0.00055	19.7	3.3	0.48	10.3	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379004818|ref|YP_005260490.1|	-	0.00073	19.7	10.2	0.0071	16.5	7.0	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004818|ref|YP_005260490.1|	-	0.00096	19.2	10.2	0.098	13.0	1.2	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379004818|ref|YP_005260490.1|	-	0.0053	17.4	4.6	0.88	10.3	0.2	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
TPR_10	PF13374.1	gi|379004818|ref|YP_005260490.1|	-	0.053	13.4	0.1	0.14	12.1	0.1	1.7	1	0	0	1	1	1	0	Tetratricopeptide	repeat
Fer4_15	PF13459.1	gi|379004818|ref|YP_005260490.1|	-	0.098	13.2	2.3	6.8	7.3	0.1	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|379004818|ref|YP_005260490.1|	-	1.8	9.2	17.9	7.3	7.4	3.3	3.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
FAD_binding_4	PF01565.18	gi|379004819|ref|YP_005260491.1|	-	1.9e-22	79.2	0.0	2.9e-22	78.6	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.14	gi|379004819|ref|YP_005260491.1|	-	1.8e-05	24.2	0.2	6.1e-05	22.4	0.0	1.8	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD-oxidase_C	PF02913.14	gi|379004820|ref|YP_005260492.1|	-	8.2e-65	218.5	0.6	1.1e-64	218.1	0.4	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|379004820|ref|YP_005260492.1|	-	8.7e-36	122.4	2.4	4.2e-35	120.2	1.7	2.1	1	1	0	1	1	1	1	FAD	binding	domain
AP_endonuc_2	PF01261.19	gi|379004820|ref|YP_005260492.1|	-	0.011	15.0	0.1	0.17	11.1	0.0	2.3	2	0	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
FAD_binding_5	PF00941.16	gi|379004820|ref|YP_005260492.1|	-	0.095	12.1	0.1	0.17	11.3	0.1	1.5	1	0	0	1	1	1	0	FAD	binding	domain	in	molybdopterin	dehydrogenase
Malate_synthase	PF01274.17	gi|379004822|ref|YP_005260494.1|	-	1e-38	132.7	0.0	3.6e-34	117.6	0.0	2.1	2	0	0	2	2	2	2	Malate	synthase
HpcH_HpaI	PF03328.9	gi|379004822|ref|YP_005260494.1|	-	0.075	11.9	0.0	0.15	10.9	0.0	1.4	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
Na_Ca_ex	PF01699.19	gi|379004825|ref|YP_005260497.1|	-	0.00071	19.1	0.9	0.0011	18.6	0.6	1.3	1	0	0	1	1	1	1	Sodium/calcium	exchanger	protein
NTP_transf_2	PF01909.18	gi|379004829|ref|YP_005260501.1|	-	1.4e-15	57.3	0.4	1.8e-15	57.0	0.3	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|379004829|ref|YP_005260501.1|	-	0.00041	20.3	0.0	0.0005	20.1	0.0	1.2	1	0	0	1	1	1	1	DNA	polymerase	beta	palm
DUF2704	PF10866.3	gi|379004829|ref|YP_005260501.1|	-	0.13	11.6	0.5	0.27	10.6	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2704)
HEPN	PF05168.9	gi|379004830|ref|YP_005260502.1|	-	5.2e-22	77.9	0.5	6e-22	77.7	0.3	1.0	1	0	0	1	1	1	1	HEPN	domain
TPR_10	PF13374.1	gi|379004830|ref|YP_005260502.1|	-	0.97	9.4	4.0	26	4.9	0.6	3.1	4	0	0	4	4	4	0	Tetratricopeptide	repeat
DUF162	PF02589.10	gi|379004831|ref|YP_005260503.1|	-	1.8e-49	167.8	1.0	2.5e-49	167.3	0.7	1.2	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|379004831|ref|YP_005260503.1|	-	2.1e-11	43.6	2.1	3.8e-11	42.8	1.5	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379004831|ref|YP_005260503.1|	-	3.8e-08	33.5	1.0	8e-08	32.5	0.7	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004831|ref|YP_005260503.1|	-	8.2e-08	32.5	3.4	0.00081	19.7	0.2	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379004831|ref|YP_005260503.1|	-	3.2e-07	30.0	1.7	6.2e-07	29.1	1.2	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004831|ref|YP_005260503.1|	-	2.1e-06	27.9	3.9	4.6e-06	26.9	2.7	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|379004831|ref|YP_005260503.1|	-	4.1e-05	23.1	1.0	0.0011	18.5	0.0	2.5	2	0	0	2	2	2	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_6	PF12837.2	gi|379004831|ref|YP_005260503.1|	-	5.1e-05	22.9	7.2	0.004	16.9	0.5	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379004831|ref|YP_005260503.1|	-	5.5e-05	22.5	8.0	0.0021	17.6	0.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004831|ref|YP_005260503.1|	-	0.00012	22.3	6.4	0.0075	16.5	5.8	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004831|ref|YP_005260503.1|	-	0.0003	21.4	1.3	0.00072	20.2	0.9	1.7	1	0	0	1	1	1	1	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379004831|ref|YP_005260503.1|	-	0.0027	17.5	3.5	0.06	13.2	0.3	2.3	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004831|ref|YP_005260503.1|	-	0.017	15.4	6.8	0.12	12.7	0.7	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379004831|ref|YP_005260503.1|	-	0.054	13.4	8.2	0.15	12.0	0.8	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004831|ref|YP_005260503.1|	-	0.13	12.9	13.8	1.1	10.0	3.1	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Yip1	PF04893.12	gi|379004832|ref|YP_005260504.1|	-	0.041	13.3	7.7	0.056	12.9	5.3	1.2	1	0	0	1	1	1	0	Yip1	domain
RhodobacterPufX	PF11511.3	gi|379004832|ref|YP_005260504.1|	-	2.5	7.5	6.4	12	5.3	0.3	2.5	1	1	1	2	2	2	0	Intrinsic	membrane	protein	PufX
ABC_tran	PF00005.22	gi|379004833|ref|YP_005260505.1|	-	2.5e-16	60.2	0.0	3.2e-16	59.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004833|ref|YP_005260505.1|	-	1.2e-09	38.5	0.0	2.1e-05	24.6	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|379004833|ref|YP_005260505.1|	-	2.6e-06	26.9	0.0	3.3e-06	26.6	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|379004833|ref|YP_005260505.1|	-	2.1e-05	24.0	0.1	0.13	11.7	0.0	2.1	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_22	PF13401.1	gi|379004833|ref|YP_005260505.1|	-	0.00012	22.2	0.0	0.00018	21.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379004833|ref|YP_005260505.1|	-	0.00012	22.1	0.2	0.00017	21.6	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|379004833|ref|YP_005260505.1|	-	0.00061	19.2	0.1	0.0011	18.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|379004833|ref|YP_005260505.1|	-	0.00072	20.3	0.0	0.00084	20.1	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|379004833|ref|YP_005260505.1|	-	0.001	19.2	0.0	0.0015	18.6	0.0	1.3	1	0	0	1	1	1	1	RNA	helicase
AAA	PF00004.24	gi|379004833|ref|YP_005260505.1|	-	0.0011	19.2	0.1	0.0013	18.8	0.0	1.4	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|379004833|ref|YP_005260505.1|	-	0.0011	18.1	0.0	0.0017	17.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_13	PF13166.1	gi|379004833|ref|YP_005260505.1|	-	0.0022	16.5	0.0	0.0029	16.1	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|379004833|ref|YP_005260505.1|	-	0.0051	16.4	0.1	0.0079	15.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|379004833|ref|YP_005260505.1|	-	0.0084	16.4	0.0	0.016	15.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379004833|ref|YP_005260505.1|	-	0.013	15.8	0.0	0.016	15.5	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379004833|ref|YP_005260505.1|	-	0.014	14.5	0.0	0.022	13.9	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Arch_ATPase	PF01637.13	gi|379004833|ref|YP_005260505.1|	-	0.018	14.7	0.0	0.019	14.6	0.0	1.2	1	1	0	1	1	1	0	Archaeal	ATPase
NACHT	PF05729.7	gi|379004833|ref|YP_005260505.1|	-	0.02	14.5	0.0	0.034	13.8	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.9	gi|379004833|ref|YP_005260505.1|	-	0.022	14.4	0.0	0.037	13.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|379004833|ref|YP_005260505.1|	-	0.029	14.2	0.0	0.054	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379004833|ref|YP_005260505.1|	-	0.051	13.5	0.1	0.15	11.9	0.1	1.7	1	1	1	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|379004833|ref|YP_005260505.1|	-	0.071	13.0	0.0	0.13	12.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379004833|ref|YP_005260505.1|	-	0.085	12.2	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
ATP_bind_1	PF03029.12	gi|379004833|ref|YP_005260505.1|	-	0.11	12.0	0.0	2.2	7.7	0.0	2.0	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.9	gi|379004833|ref|YP_005260505.1|	-	0.12	12.0	0.1	0.19	11.4	0.0	1.5	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Adeno_E3	PF06040.6	gi|379004834|ref|YP_005260506.1|	-	6.9	6.6	7.9	0.21	11.5	1.2	1.6	2	0	0	2	2	2	0	Adenovirus	E3	protein
DUF2569	PF10754.4	gi|379004836|ref|YP_005260508.1|	-	1.5	9.0	6.7	3	8.0	4.7	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2569)
Consortin_C	PF15281.1	gi|379004836|ref|YP_005260508.1|	-	4.2	6.9	6.9	0.36	10.3	1.5	1.6	2	0	0	2	2	2	0	Consortin	C-terminus
ABC2_membrane	PF01061.19	gi|379004836|ref|YP_005260508.1|	-	7.8	5.5	17.9	0.37	9.9	4.6	2.1	1	1	1	2	2	2	0	ABC-2	type	transporter
FeoB_N	PF02421.13	gi|379004837|ref|YP_005260509.1|	-	1.9e-27	95.4	0.0	2.6e-27	94.9	0.0	1.2	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Gate	PF07670.9	gi|379004837|ref|YP_005260509.1|	-	3.4e-25	88.0	21.6	1.2e-18	67.0	3.8	3.1	3	0	0	3	3	3	2	Nucleoside	recognition
MMR_HSR1	PF01926.18	gi|379004837|ref|YP_005260509.1|	-	5.1e-17	61.8	0.0	8e-17	61.2	0.0	1.3	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|379004837|ref|YP_005260509.1|	-	0.0056	15.9	0.0	0.0086	15.3	0.0	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
AAA_17	PF13207.1	gi|379004837|ref|YP_005260509.1|	-	0.031	15.0	0.0	3.3	8.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Dynamin_N	PF00350.18	gi|379004837|ref|YP_005260509.1|	-	0.045	13.5	0.1	7.2	6.3	0.0	2.2	1	1	1	2	2	2	0	Dynamin	family
PduV-EutP	PF10662.4	gi|379004837|ref|YP_005260509.1|	-	0.053	13.0	0.0	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
Miro	PF08477.8	gi|379004837|ref|YP_005260509.1|	-	0.057	13.9	0.0	0.091	13.2	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
AIG1	PF04548.11	gi|379004837|ref|YP_005260509.1|	-	0.15	11.1	0.0	0.21	10.6	0.0	1.3	1	0	0	1	1	1	0	AIG1	family
MobB	PF03205.9	gi|379004837|ref|YP_005260509.1|	-	0.16	11.6	0.0	0.51	10.0	0.0	1.8	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AhpC-TSA	PF00578.16	gi|379004839|ref|YP_005260511.1|	-	2.1e-30	104.9	0.0	2.8e-30	104.5	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
1-cysPrx_C	PF10417.4	gi|379004839|ref|YP_005260511.1|	-	2.6e-17	62.1	0.3	5.4e-17	61.1	0.2	1.6	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
Redoxin	PF08534.5	gi|379004839|ref|YP_005260511.1|	-	8.5e-12	44.8	0.0	1.2e-11	44.3	0.0	1.2	1	0	0	1	1	1	1	Redoxin
Tricorn_C1	PF14684.1	gi|379004840|ref|YP_005260512.1|	-	4.9e-29	100.0	1.2	8.8e-29	99.1	0.8	1.4	1	0	0	1	1	1	1	Tricorn	protease	C1	domain
Peptidase_S41	PF03572.13	gi|379004840|ref|YP_005260512.1|	-	6.2e-23	81.0	0.0	2.6e-22	79.0	0.0	1.9	1	1	0	1	1	1	1	Peptidase	family	S41
Tricorn_PDZ	PF14685.1	gi|379004840|ref|YP_005260512.1|	-	2.1e-22	78.7	0.0	5.3e-22	77.4	0.0	1.7	1	0	0	1	1	1	1	Tricorn	protease	PDZ	domain
PD40	PF07676.7	gi|379004840|ref|YP_005260512.1|	-	2.1e-13	49.5	7.3	0.004	16.7	0.0	6.9	7	0	0	7	7	7	3	WD40-like	Beta	Propeller	Repeat
DPPIV_N	PF00930.16	gi|379004840|ref|YP_005260512.1|	-	7e-06	24.8	0.0	2.5	6.6	0.0	5.2	4	2	2	6	6	6	3	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
PQQ_3	PF13570.1	gi|379004840|ref|YP_005260512.1|	-	3.5e-05	23.9	5.3	0.03	14.6	0.1	5.3	4	1	1	5	5	5	2	PQQ-like	domain
PQQ_2	PF13360.1	gi|379004840|ref|YP_005260512.1|	-	6.8e-05	22.4	0.1	0.65	9.4	0.0	3.3	3	0	0	3	3	3	2	PQQ-like	domain
VKOR	PF07884.9	gi|379004841|ref|YP_005260513.1|	-	6.2e-13	48.7	13.6	6.4e-12	45.4	9.1	2.4	1	1	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
COXG	PF06240.8	gi|379004842|ref|YP_005260514.1|	-	1.3e-32	112.4	0.1	1.4e-32	112.2	0.0	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Polyketide_cyc2	PF10604.4	gi|379004842|ref|YP_005260514.1|	-	1.4e-10	41.4	0.0	1.7e-10	41.1	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
PaRep2b	PF07775.6	gi|379004843|ref|YP_005260515.1|	-	2.8e-08	32.4	0.2	2.8e-08	32.4	0.2	1.0	1	0	0	1	1	1	1	PaRep2b	protein
Taq-exonuc	PF09281.5	gi|379004843|ref|YP_005260515.1|	-	0.027	14.6	0.1	0.027	14.6	0.1	1.0	1	0	0	1	1	1	0	Taq	polymerase,	exonuclease
PaRep2b	PF07775.6	gi|379004844|ref|YP_005260516.1|	-	1e-05	23.9	0.1	1.1e-05	23.9	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
DUF659	PF04937.10	gi|379004844|ref|YP_005260516.1|	-	0.093	12.2	0.0	0.093	12.2	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF	659)
DUF86	PF01934.12	gi|379004847|ref|YP_005260519.1|	-	4.9e-12	45.5	0.3	6e-12	45.2	0.2	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
ASFV_360	PF01671.11	gi|379004847|ref|YP_005260519.1|	-	0.052	12.9	0.1	0.071	12.4	0.1	1.1	1	0	0	1	1	1	0	African	swine	fever	virus	multigene	family	360	protein
DUF4147	PF13660.1	gi|379004850|ref|YP_005260522.1|	-	8.1e-77	257.5	0.1	1.1e-76	257.1	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|379004850|ref|YP_005260522.1|	-	3.9e-35	120.1	1.3	1.1e-34	118.7	0.5	2.0	2	0	0	2	2	2	1	MOFRL	family
Gp58	PF07902.6	gi|379004850|ref|YP_005260522.1|	-	0.089	10.9	0.3	0.12	10.5	0.2	1.1	1	0	0	1	1	1	0	gp58-like	protein
DUF131	PF01998.12	gi|379004851|ref|YP_005260523.1|	-	1.5e-16	59.5	4.2	1.5e-16	59.5	2.9	2.0	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF131
DUF202	PF02656.10	gi|379004851|ref|YP_005260523.1|	-	0.0072	16.5	2.8	0.012	15.8	1.9	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF202)
SUR7	PF06687.7	gi|379004851|ref|YP_005260523.1|	-	1.2	8.6	4.4	1.4	8.4	3.0	1.1	1	0	0	1	1	1	0	SUR7/PalI	family
SecG	PF03840.9	gi|379004851|ref|YP_005260523.1|	-	1.3	8.8	6.0	1.3	8.7	0.1	2.2	2	0	0	2	2	2	0	Preprotein	translocase	SecG	subunit
TrbE	PF11100.3	gi|379004851|ref|YP_005260523.1|	-	3.2	7.6	5.2	1.8	8.5	0.2	2.1	2	0	0	2	2	2	0	Conjugal	transfer	protein	TrbE
DUF872	PF05915.7	gi|379004851|ref|YP_005260523.1|	-	3.4	7.5	6.5	0.3	10.9	1.2	1.7	1	1	1	2	2	2	0	Eukaryotic	protein	of	unknown	function	(DUF872)
KASH	PF10541.4	gi|379004851|ref|YP_005260523.1|	-	9.9	6.1	7.5	2.3	8.1	1.1	2.1	2	0	0	2	2	2	0	Nuclear	envelope	localisation	domain
Ycf9	PF01737.12	gi|379004851|ref|YP_005260523.1|	-	9.9	5.6	12.2	0.52	9.7	1.0	2.4	2	1	0	2	2	2	0	YCF9
DUF131	PF01998.12	gi|379004852|ref|YP_005260524.1|	-	3.1e-09	36.0	4.0	3.1e-09	36.0	2.8	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	DUF131
DUF202	PF02656.10	gi|379004852|ref|YP_005260524.1|	-	0.032	14.4	4.3	0.057	13.6	3.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
MASE1	PF05231.9	gi|379004852|ref|YP_005260524.1|	-	0.14	11.1	10.5	0.16	10.9	7.2	1.0	1	0	0	1	1	1	0	MASE1
DUF1625	PF07787.7	gi|379004852|ref|YP_005260524.1|	-	2.2	7.4	4.7	3.2	6.9	3.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1625)
DUF4233	PF14017.1	gi|379004852|ref|YP_005260524.1|	-	2.8	7.9	11.8	3.7	7.5	8.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4233)
DUF3394	PF11874.3	gi|379004852|ref|YP_005260524.1|	-	3	7.3	4.9	0.28	10.6	0.3	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3394)
DUF872	PF05915.7	gi|379004852|ref|YP_005260524.1|	-	3.3	7.5	6.0	3.8	7.4	3.8	1.5	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
EmrE	PF13536.1	gi|379004852|ref|YP_005260524.1|	-	10	6.3	13.5	28	4.9	8.2	1.8	1	1	1	2	2	2	0	Multidrug	resistance	efflux	transporter
4HBT	PF03061.17	gi|379004853|ref|YP_005260525.1|	-	1.2e-12	47.7	0.0	1.4e-12	47.5	0.0	1.1	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.1	gi|379004853|ref|YP_005260525.1|	-	0.0022	17.7	0.0	0.0027	17.4	0.0	1.1	1	0	0	1	1	1	1	Thioesterase-like	superfamily
tRNA_anti-codon	PF01336.20	gi|379004853|ref|YP_005260525.1|	-	0.063	13.1	0.0	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	OB-fold	nucleic	acid	binding	domain
MASE1	PF05231.9	gi|379004854|ref|YP_005260526.1|	-	0.0079	15.2	0.2	0.0085	15.1	0.2	1.0	1	0	0	1	1	1	1	MASE1
TrmB	PF01978.14	gi|379004856|ref|YP_005260528.1|	-	3.4e-06	26.6	0.2	6.3e-06	25.8	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|379004856|ref|YP_005260528.1|	-	2.1e-05	24.7	0.1	6.4e-05	23.1	0.0	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|379004856|ref|YP_005260528.1|	-	0.00033	20.4	0.0	0.00057	19.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR_2	PF12802.2	gi|379004856|ref|YP_005260528.1|	-	0.00035	20.1	0.1	0.00073	19.1	0.0	1.5	1	0	0	1	1	1	1	MarR	family
Phage_rep_org_N	PF09681.5	gi|379004856|ref|YP_005260528.1|	-	0.0032	17.0	0.0	0.0048	16.4	0.0	1.3	1	0	0	1	1	1	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF505	PF04458.7	gi|379004856|ref|YP_005260528.1|	-	0.0054	14.9	0.2	0.0068	14.5	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
Replic_Relax	PF13814.1	gi|379004856|ref|YP_005260528.1|	-	0.0085	15.9	0.1	0.011	15.6	0.1	1.1	1	0	0	1	1	1	1	Replication-relaxation
HTH_20	PF12840.2	gi|379004856|ref|YP_005260528.1|	-	0.0095	15.7	0.2	0.02	14.6	0.2	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379004856|ref|YP_005260528.1|	-	0.01	15.3	0.6	0.015	14.8	0.4	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
Caudo_TAP	PF02413.12	gi|379004856|ref|YP_005260528.1|	-	0.012	15.7	0.1	0.017	15.2	0.1	1.4	1	1	0	1	1	1	0	Caudovirales	tail	fibre	assembly	protein
HTH_IclR	PF09339.5	gi|379004856|ref|YP_005260528.1|	-	0.022	14.3	0.7	0.039	13.5	0.2	1.7	2	0	0	2	2	1	0	IclR	helix-turn-helix	domain
DUF4423	PF14394.1	gi|379004856|ref|YP_005260528.1|	-	0.026	14.0	0.0	0.047	13.2	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
PadR	PF03551.9	gi|379004856|ref|YP_005260528.1|	-	0.029	14.1	0.1	0.047	13.4	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF2250	PF10007.4	gi|379004856|ref|YP_005260528.1|	-	0.044	13.6	0.4	0.17	11.8	0.0	2.1	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Rio2_N	PF09202.6	gi|379004856|ref|YP_005260528.1|	-	0.1	12.6	0.1	0.91	9.6	0.0	2.1	1	1	1	2	2	2	0	Rio2,	N-terminal
Mrr_N	PF14338.1	gi|379004856|ref|YP_005260528.1|	-	0.1	12.6	0.5	0.65	10.1	0.0	2.4	1	1	2	3	3	3	0	Mrr	N-terminal	domain
Rrf2	PF02082.15	gi|379004856|ref|YP_005260528.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
EamA	PF00892.15	gi|379004857|ref|YP_005260529.1|	-	2.3e-18	66.4	28.4	1.4e-15	57.4	5.0	2.8	2	2	1	3	3	3	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|379004857|ref|YP_005260529.1|	-	0.055	13.6	29.3	0.15	12.2	6.5	3.3	1	1	3	4	4	4	0	Multidrug	resistance	efflux	transporter
NTP_transf_2	PF01909.18	gi|379004858|ref|YP_005260530.1|	-	1.6e-08	34.7	0.0	1.9e-08	34.4	0.0	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_Packaging_2	PF11123.3	gi|379004858|ref|YP_005260530.1|	-	0.13	12.1	0.0	0.17	11.7	0.0	1.2	1	0	0	1	1	1	0	DNA	packaging	protein
HEPN	PF05168.9	gi|379004859|ref|YP_005260531.1|	-	2.9e-23	81.9	0.7	4.3e-23	81.4	0.5	1.2	1	0	0	1	1	1	1	HEPN	domain
VitK2_biosynth	PF02621.9	gi|379004860|ref|YP_005260532.1|	-	1.3e-72	243.9	0.1	1.5e-72	243.8	0.1	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
Helicase_RecD	PF05127.9	gi|379004861|ref|YP_005260533.1|	-	3.8e-54	182.9	0.0	8.2e-54	181.9	0.0	1.6	2	0	0	2	2	2	1	Helicase
GNAT_acetyltr_2	PF13718.1	gi|379004861|ref|YP_005260533.1|	-	4.6e-49	166.4	0.0	2.7e-48	163.9	0.0	2.0	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
DUF1726	PF08351.6	gi|379004861|ref|YP_005260533.1|	-	2.8e-27	94.2	0.0	7.3e-27	92.8	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
tRNA_bind_2	PF13725.1	gi|379004861|ref|YP_005260533.1|	-	3.6e-13	49.4	0.0	3.1e-10	40.0	0.0	2.5	2	0	0	2	2	2	2	Possible	tRNA	binding	domain
Acetyltransf_1	PF00583.19	gi|379004861|ref|YP_005260533.1|	-	1e-07	31.8	0.0	2.7e-07	30.5	0.0	1.8	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|379004861|ref|YP_005260533.1|	-	2.2e-06	27.7	0.4	7e-06	26.1	0.0	2.0	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|379004861|ref|YP_005260533.1|	-	0.095	12.8	0.0	0.28	11.2	0.0	1.8	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
EamA	PF00892.15	gi|379004863|ref|YP_005260535.1|	-	4.3e-23	81.7	30.7	4.8e-14	52.4	9.2	2.1	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|379004863|ref|YP_005260535.1|	-	0.0049	17.0	6.4	0.0049	17.0	4.5	3.5	2	2	1	3	3	3	2	Multidrug	resistance	efflux	transporter
eIF-5_eIF-2B	PF01873.12	gi|379004864|ref|YP_005260536.1|	-	6.8e-30	103.2	0.0	8e-30	103.0	0.0	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
DUF2387	PF09526.5	gi|379004864|ref|YP_005260536.1|	-	0.0042	16.9	0.4	0.0076	16.1	0.2	1.4	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Elf1	PF05129.8	gi|379004864|ref|YP_005260536.1|	-	0.011	15.4	0.2	0.019	14.6	0.2	1.4	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Tmemb_55A	PF09788.4	gi|379004864|ref|YP_005260536.1|	-	0.037	13.1	0.1	0.042	12.9	0.1	1.2	1	0	0	1	1	1	0	Transmembrane	protein	55A
Lar_restr_allev	PF14354.1	gi|379004864|ref|YP_005260536.1|	-	0.072	13.4	1.5	0.24	11.7	0.9	1.8	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-ribbon_3	PF13248.1	gi|379004864|ref|YP_005260536.1|	-	0.099	11.8	1.6	1.8	7.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379004864|ref|YP_005260536.1|	-	0.14	11.8	0.5	0.27	10.9	0.4	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
SUI1	PF01253.17	gi|379004864|ref|YP_005260536.1|	-	0.15	11.9	0.0	0.28	11.0	0.0	1.5	1	0	0	1	1	1	0	Translation	initiation	factor	SUI1
DUF35	PF01796.12	gi|379004865|ref|YP_005260537.1|	-	2.2e-12	47.0	0.0	3.5e-12	46.3	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|379004865|ref|YP_005260537.1|	-	4e-11	42.4	1.6	4e-11	42.4	1.1	1.6	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.2	gi|379004865|ref|YP_005260537.1|	-	0.021	14.6	0.9	0.033	14.0	0.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|379004865|ref|YP_005260537.1|	-	0.13	11.9	0.0	0.2	11.3	0.0	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
TFIIS_C	PF01096.13	gi|379004865|ref|YP_005260537.1|	-	0.17	11.5	1.2	10	5.8	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Thiolase_N	PF00108.18	gi|379004866|ref|YP_005260538.1|	-	1.7e-11	43.6	0.3	1.5e-09	37.2	0.0	2.2	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379004866|ref|YP_005260538.1|	-	7.8e-10	38.2	0.8	6.8e-09	35.2	0.0	2.6	2	1	1	3	3	3	1	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|379004866|ref|YP_005260538.1|	-	2.4e-05	23.8	0.1	0.00026	20.5	0.1	2.3	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
ketoacyl-synt	PF00109.21	gi|379004866|ref|YP_005260538.1|	-	0.00027	20.5	4.3	0.00078	18.9	1.0	2.4	1	1	2	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
Acyl-CoA_dh_1	PF00441.19	gi|379004867|ref|YP_005260539.1|	-	5.5e-42	143.3	4.1	5.5e-42	143.3	2.8	1.5	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|379004867|ref|YP_005260539.1|	-	1.3e-35	122.3	1.3	4.4e-35	120.6	0.0	2.4	3	0	0	3	3	3	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379004867|ref|YP_005260539.1|	-	3.2e-20	71.3	0.0	5.5e-20	70.6	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|379004867|ref|YP_005260539.1|	-	3.4e-17	62.9	1.6	5.4e-17	62.3	1.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
AMP-binding	PF00501.23	gi|379004868|ref|YP_005260540.1|	-	4.3e-109	364.6	0.0	5.1e-109	364.4	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379004868|ref|YP_005260540.1|	-	1.1e-18	67.9	0.5	3.8e-18	66.2	0.4	2.0	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Aldo_ket_red	PF00248.16	gi|379004869|ref|YP_005260541.1|	-	8.1e-60	202.0	0.0	9.1e-60	201.8	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
ECH	PF00378.15	gi|379004871|ref|YP_005260543.1|	-	4.4e-68	229.0	0.0	7.4e-68	228.3	0.0	1.3	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
3HCDH_N	PF02737.13	gi|379004871|ref|YP_005260543.1|	-	5.2e-64	215.2	0.8	8.2e-64	214.5	0.6	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|379004871|ref|YP_005260543.1|	-	2.2e-53	178.6	0.2	3.6e-25	88.1	0.0	2.9	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
F420_oxidored	PF03807.12	gi|379004871|ref|YP_005260543.1|	-	3.6e-05	24.0	0.6	0.00015	22.1	0.4	2.1	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|379004871|ref|YP_005260543.1|	-	8.4e-05	22.4	0.0	0.00022	21.0	0.0	1.8	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379004871|ref|YP_005260543.1|	-	0.00056	19.6	0.5	0.0011	18.7	0.1	1.7	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox_2	PF07992.9	gi|379004871|ref|YP_005260543.1|	-	0.0038	17.1	0.0	0.0074	16.1	0.0	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|379004871|ref|YP_005260543.1|	-	0.008	15.5	0.0	0.026	13.9	0.0	1.9	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|379004871|ref|YP_005260543.1|	-	0.013	15.8	0.9	0.06	13.7	0.4	2.4	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|379004871|ref|YP_005260543.1|	-	0.014	15.4	0.2	0.067	13.1	0.0	2.2	2	0	0	2	2	2	0	TrkA-N	domain
XdhC_C	PF13478.1	gi|379004871|ref|YP_005260543.1|	-	0.044	14.0	0.2	0.15	12.3	0.0	2.0	2	0	0	2	2	2	0	XdhC	Rossmann	domain
NAD_binding_7	PF13241.1	gi|379004871|ref|YP_005260543.1|	-	0.065	13.4	0.2	0.21	11.8	0.1	1.8	1	0	0	1	1	1	0	Putative	NAD(P)-binding
DAO	PF01266.19	gi|379004871|ref|YP_005260543.1|	-	0.21	10.4	0.7	0.4	9.5	0.5	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
zf-CDGSH	PF09360.5	gi|379004872|ref|YP_005260544.1|	-	2.5e-15	56.0	1.3	3e-15	55.7	0.9	1.1	1	0	0	1	1	1	1	Iron-binding	zinc	finger	CDGSH	type
Peptidase_M42	PF05343.9	gi|379004873|ref|YP_005260545.1|	-	6.3e-96	320.5	0.0	7.1e-96	320.4	0.0	1.0	1	0	0	1	1	1	1	M42	glutamyl	aminopeptidase
Peptidase_M20	PF01546.23	gi|379004873|ref|YP_005260545.1|	-	1.3e-11	44.3	0.1	1.9e-11	43.8	0.1	1.2	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
Peptidase_M28	PF04389.12	gi|379004873|ref|YP_005260545.1|	-	0.0065	16.2	0.0	0.019	14.7	0.0	1.8	2	1	0	2	2	2	1	Peptidase	family	M28
PEP-utilizers	PF00391.18	gi|379004873|ref|YP_005260545.1|	-	0.017	14.6	0.1	1.2	8.7	0.0	2.4	1	1	1	2	2	2	0	PEP-utilising	enzyme,	mobile	domain
PhoU	PF01895.14	gi|379004874|ref|YP_005260546.1|	-	1.5e-20	73.4	10.1	1.7e-10	41.2	1.5	2.2	2	0	0	2	2	2	2	PhoU	domain
PipA	PF07108.6	gi|379004874|ref|YP_005260546.1|	-	0.057	12.7	0.1	0.2	10.9	0.0	1.8	2	0	0	2	2	2	0	PipA	protein
TetR_C_7	PF14246.1	gi|379004874|ref|YP_005260546.1|	-	0.074	13.2	0.1	0.26	11.5	0.1	2.0	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	region
DUF4533	PF15047.1	gi|379004874|ref|YP_005260546.1|	-	0.09	12.1	0.5	4.8	6.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4533)
ABC_tran	PF00005.22	gi|379004875|ref|YP_005260547.1|	-	5.3e-29	101.2	0.0	9.3e-29	100.4	0.0	1.4	2	0	0	2	2	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004875|ref|YP_005260547.1|	-	1.4e-10	41.6	0.0	1.9e-07	31.3	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379004875|ref|YP_005260547.1|	-	0.00052	19.3	0.4	0.38	9.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
BCA_ABC_TP_C	PF12399.3	gi|379004875|ref|YP_005260547.1|	-	0.0081	15.8	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SbcCD_C	PF13558.1	gi|379004875|ref|YP_005260547.1|	-	0.0091	15.8	0.1	0.061	13.2	0.1	2.0	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_23	PF13476.1	gi|379004875|ref|YP_005260547.1|	-	0.012	15.9	0.1	0.023	15.0	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|379004875|ref|YP_005260547.1|	-	0.015	15.2	0.0	0.028	14.3	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
RecA	PF00154.16	gi|379004875|ref|YP_005260547.1|	-	0.016	14.2	0.0	0.024	13.6	0.0	1.3	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
AAA_29	PF13555.1	gi|379004875|ref|YP_005260547.1|	-	0.017	14.6	0.2	0.034	13.6	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|379004875|ref|YP_005260547.1|	-	0.022	14.8	0.7	2.3	8.3	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|379004875|ref|YP_005260547.1|	-	0.031	13.8	0.0	0.081	12.5	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|379004875|ref|YP_005260547.1|	-	0.037	13.4	0.1	0.09	12.1	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379004875|ref|YP_005260547.1|	-	0.047	13.4	5.0	0.11	12.2	0.4	2.9	4	0	0	4	4	4	0	Part	of	AAA	domain
AAA	PF00004.24	gi|379004875|ref|YP_005260547.1|	-	0.053	13.7	0.6	1.2	9.3	0.4	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_11	PF13086.1	gi|379004875|ref|YP_005260547.1|	-	0.054	13.0	0.0	0.12	11.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379004875|ref|YP_005260547.1|	-	0.093	12.1	1.2	7.1	5.9	0.3	2.3	2	1	0	2	2	2	0	AAA-like	domain
AAA_15	PF13175.1	gi|379004875|ref|YP_005260547.1|	-	0.12	11.3	0.0	4.3	6.2	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|379004876|ref|YP_005260548.1|	-	3e-28	98.8	0.0	4e-28	98.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004876|ref|YP_005260548.1|	-	3.8e-10	40.2	0.3	3.1e-05	24.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|379004876|ref|YP_005260548.1|	-	7.7e-10	38.2	0.5	1.6e-09	37.1	0.3	1.6	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
SMC_N	PF02463.14	gi|379004876|ref|YP_005260548.1|	-	2.3e-06	27.0	0.3	0.0034	16.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379004876|ref|YP_005260548.1|	-	2.5e-05	24.6	0.0	4.7e-05	23.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379004876|ref|YP_005260548.1|	-	2.7e-05	24.3	0.4	0.00058	20.0	0.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004876|ref|YP_005260548.1|	-	4.2e-05	22.9	0.0	8e-05	22.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_ATPase	PF09818.4	gi|379004876|ref|YP_005260548.1|	-	5.5e-05	21.9	0.6	0.062	11.8	0.0	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
AAA_10	PF12846.2	gi|379004876|ref|YP_005260548.1|	-	0.00015	21.3	0.1	0.051	13.0	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_19	PF13245.1	gi|379004876|ref|YP_005260548.1|	-	0.00028	20.5	1.1	0.0015	18.2	0.0	2.3	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_16	PF13191.1	gi|379004876|ref|YP_005260548.1|	-	0.0004	20.4	0.1	0.00082	19.4	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|379004876|ref|YP_005260548.1|	-	0.00067	19.4	0.0	0.001	18.8	0.0	1.4	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_30	PF13604.1	gi|379004876|ref|YP_005260548.1|	-	0.00084	18.9	0.1	0.0025	17.4	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|379004876|ref|YP_005260548.1|	-	0.0013	18.1	0.0	0.06	12.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|379004876|ref|YP_005260548.1|	-	0.0051	16.6	0.1	0.028	14.2	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|379004876|ref|YP_005260548.1|	-	0.006	16.4	0.0	0.35	10.7	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379004876|ref|YP_005260548.1|	-	0.0064	17.2	0.1	0.035	14.9	0.0	2.1	2	1	0	2	2	2	1	AAA	domain
T2SE	PF00437.15	gi|379004876|ref|YP_005260548.1|	-	0.0066	15.3	0.1	0.043	12.7	0.0	2.0	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
SRP54	PF00448.17	gi|379004876|ref|YP_005260548.1|	-	0.0079	15.6	0.1	0.017	14.5	0.0	1.6	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
MobB	PF03205.9	gi|379004876|ref|YP_005260548.1|	-	0.0094	15.6	0.0	0.019	14.6	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF258	PF03193.11	gi|379004876|ref|YP_005260548.1|	-	0.017	14.3	0.0	0.027	13.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
NACHT	PF05729.7	gi|379004876|ref|YP_005260548.1|	-	0.021	14.4	0.0	0.038	13.6	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
NB-ARC	PF00931.17	gi|379004876|ref|YP_005260548.1|	-	0.033	13.0	0.1	0.1	11.4	0.0	1.7	2	0	0	2	2	2	0	NB-ARC	domain
AAA_15	PF13175.1	gi|379004876|ref|YP_005260548.1|	-	0.034	13.1	0.0	0.91	8.4	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA	PF00004.24	gi|379004876|ref|YP_005260548.1|	-	0.045	13.9	0.1	2	8.6	0.0	2.4	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|379004876|ref|YP_005260548.1|	-	0.048	13.0	0.0	0.1	12.0	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF3584	PF12128.3	gi|379004876|ref|YP_005260548.1|	-	0.049	10.9	0.1	0.072	10.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
AAA_28	PF13521.1	gi|379004876|ref|YP_005260548.1|	-	0.13	12.1	0.1	0.45	10.4	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.10	gi|379004876|ref|YP_005260548.1|	-	0.15	11.7	0.2	2.9	7.5	0.0	2.1	2	0	0	2	2	2	0	NTPase
DLIC	PF05783.6	gi|379004876|ref|YP_005260548.1|	-	0.18	10.4	0.0	0.26	9.9	0.0	1.1	1	0	0	1	1	1	0	Dynein	light	intermediate	chain	(DLIC)
BPD_transp_2	PF02653.11	gi|379004877|ref|YP_005260549.1|	-	6.7e-30	103.9	50.2	9.1e-30	103.5	34.8	1.2	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Pam17	PF08566.5	gi|379004877|ref|YP_005260549.1|	-	0.62	9.7	4.6	1.7	8.3	2.0	2.3	1	1	1	2	2	2	0	Mitochondrial	import	protein	Pam17
BPD_transp_2	PF02653.11	gi|379004878|ref|YP_005260550.1|	-	9.7e-30	103.4	51.1	1.1e-29	103.1	35.4	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|379004879|ref|YP_005260551.1|	-	2e-56	191.7	2.7	2.9e-56	191.3	1.9	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
ANF_receptor	PF01094.23	gi|379004879|ref|YP_005260551.1|	-	4.6e-19	68.4	0.1	8.6e-19	67.5	0.0	1.4	1	1	0	1	1	1	1	Receptor	family	ligand	binding	region
Peripla_BP_5	PF13433.1	gi|379004879|ref|YP_005260551.1|	-	8.2e-17	60.9	0.2	3.3e-13	49.1	0.0	2.1	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
ABC_sub_bind	PF04392.7	gi|379004879|ref|YP_005260551.1|	-	7.8e-05	21.7	0.2	0.00013	21.0	0.1	1.3	1	0	0	1	1	1	1	ABC	transporter	substrate	binding	protein
Peripla_BP_4	PF13407.1	gi|379004879|ref|YP_005260551.1|	-	0.00046	19.6	0.4	0.0075	15.6	0.1	2.6	2	0	0	2	2	2	1	Periplasmic	binding	protein	domain
ABC_tran	PF00005.22	gi|379004880|ref|YP_005260552.1|	-	2.9e-33	115.0	0.0	3.9e-33	114.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004880|ref|YP_005260552.1|	-	1.8e-15	57.7	0.0	5.4e-14	52.8	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379004880|ref|YP_005260552.1|	-	1.1e-07	31.2	0.0	4.8e-07	29.2	0.0	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|379004880|ref|YP_005260552.1|	-	1.4e-05	25.2	0.0	2.5e-05	24.4	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379004880|ref|YP_005260552.1|	-	1.7e-05	24.2	0.0	3.4e-05	23.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|379004880|ref|YP_005260552.1|	-	0.0003	21.1	0.2	0.00059	20.2	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|379004880|ref|YP_005260552.1|	-	0.0016	17.6	0.1	0.0034	16.6	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function,	DUF258
AAA_15	PF13175.1	gi|379004880|ref|YP_005260552.1|	-	0.0017	17.4	0.0	0.49	9.3	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_18	PF13238.1	gi|379004880|ref|YP_005260552.1|	-	0.0019	18.5	0.0	0.0066	16.7	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379004880|ref|YP_005260552.1|	-	0.0023	18.7	0.0	0.0049	17.6	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379004880|ref|YP_005260552.1|	-	0.0025	17.8	0.2	0.016	15.1	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|379004880|ref|YP_005260552.1|	-	0.0028	17.5	0.0	0.056	13.3	0.0	2.4	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_19	PF13245.1	gi|379004880|ref|YP_005260552.1|	-	0.0066	16.1	0.0	0.028	14.1	0.0	2.0	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_33	PF13671.1	gi|379004880|ref|YP_005260552.1|	-	0.0095	15.8	0.0	0.024	14.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|379004880|ref|YP_005260552.1|	-	0.015	14.9	0.0	0.028	14.1	0.0	1.5	2	0	0	2	2	1	0	Archaeal	ATPase
Rad17	PF03215.10	gi|379004880|ref|YP_005260552.1|	-	0.036	12.7	0.0	0.052	12.2	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
DUF3987	PF13148.1	gi|379004880|ref|YP_005260552.1|	-	0.043	12.3	0.0	0.087	11.3	0.0	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3987)
AAA_30	PF13604.1	gi|379004880|ref|YP_005260552.1|	-	0.045	13.3	0.0	0.074	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_PrkA	PF08298.6	gi|379004880|ref|YP_005260552.1|	-	0.057	12.0	0.0	0.09	11.4	0.0	1.3	1	0	0	1	1	1	0	PrkA	AAA	domain
oligo_HPY	PF08352.7	gi|379004880|ref|YP_005260552.1|	-	0.079	13.3	0.1	0.18	12.1	0.1	1.6	1	0	0	1	1	1	0	Oligopeptide/dipeptide	transporter,	C-terminal	region
FtsK_SpoIIIE	PF01580.13	gi|379004880|ref|YP_005260552.1|	-	0.099	12.1	0.1	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_25	PF13481.1	gi|379004880|ref|YP_005260552.1|	-	0.11	11.9	0.1	0.52	9.6	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
Adeno_IVa2	PF02456.10	gi|379004880|ref|YP_005260552.1|	-	0.16	10.6	0.0	0.26	9.8	0.0	1.3	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
BPD_transp_1	PF00528.17	gi|379004881|ref|YP_005260553.1|	-	3.8e-11	42.8	15.2	3.8e-11	42.8	10.6	1.8	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379004882|ref|YP_005260554.1|	-	9.2e-11	41.5	21.2	9.2e-11	41.5	14.7	2.3	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
PBP_like_2	PF12849.2	gi|379004883|ref|YP_005260555.1|	-	1.3e-50	172.4	3.2	1.8e-50	172.0	2.2	1.2	1	1	0	1	1	1	1	PBP	superfamily	domain
PBP_like	PF12727.2	gi|379004883|ref|YP_005260555.1|	-	3.1e-06	26.2	0.0	1.3e-05	24.2	0.0	1.9	1	1	0	1	1	1	1	PBP	superfamily	domain
PaREP1	PF05942.6	gi|379004884|ref|YP_005260556.1|	-	1.8e-27	95.4	5.3	2.9e-27	94.7	3.7	1.3	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
ALF	PF03752.8	gi|379004885|ref|YP_005260557.1|	-	0.0078	16.0	0.1	0.026	14.3	0.1	1.9	1	0	0	1	1	1	1	Short	repeats	of	unknown	function
PhoU	PF01895.14	gi|379004885|ref|YP_005260557.1|	-	0.023	15.1	0.0	0.1	13.0	0.0	2.0	2	0	0	2	2	2	0	PhoU	domain
MAPKK1_Int	PF08923.5	gi|379004888|ref|YP_005260560.1|	-	4.2e-09	36.0	0.0	5.8e-09	35.6	0.0	1.3	1	1	0	1	1	1	1	Mitogen-activated	protein	kinase	kinase	1	interacting
Robl_LC7	PF03259.12	gi|379004888|ref|YP_005260560.1|	-	1.4e-08	34.1	0.1	1.9e-08	33.7	0.0	1.2	1	0	0	1	1	1	1	Roadblock/LC7	domain
Robl_LC7	PF03259.12	gi|379004891|ref|YP_005260563.1|	-	0.047	13.2	0.1	0.072	12.6	0.1	1.5	1	1	0	1	1	1	0	Roadblock/LC7	domain
MoaE	PF02391.12	gi|379004891|ref|YP_005260563.1|	-	0.074	12.8	0.1	0.1	12.3	0.1	1.3	1	0	0	1	1	1	0	MoaE	protein
PhoU	PF01895.14	gi|379004892|ref|YP_005260564.1|	-	0.0003	21.1	0.9	0.0021	18.4	0.1	2.2	2	0	0	2	2	2	1	PhoU	domain
SWIM	PF04434.12	gi|379004894|ref|YP_005260566.1|	-	0.00016	21.0	0.2	0.00036	19.9	0.1	1.5	1	0	0	1	1	1	1	SWIM	zinc	finger
Pertussis_S2S3	PF02918.10	gi|379004895|ref|YP_005260567.1|	-	0.016	14.9	0.6	0.41	10.4	0.1	2.2	1	1	1	2	2	2	0	Pertussis	toxin,	subunit	2	and	3,	C-terminal	domain
UPF0175	PF03683.8	gi|379004901|ref|YP_005260573.1|	-	0.023	14.1	0.9	0.052	13.0	0.0	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0175)
AKAP2_C	PF15304.1	gi|379004901|ref|YP_005260573.1|	-	0.1	12.2	0.8	0.12	11.9	0.5	1.1	1	0	0	1	1	1	0	A-kinase	anchor	protein	2	C-terminus
UPF0175	PF03683.8	gi|379004903|ref|YP_005260575.1|	-	0.035	13.5	0.3	0.097	12.1	0.2	2.0	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
SinI	PF08671.5	gi|379004903|ref|YP_005260575.1|	-	0.17	11.3	1.0	0.39	10.1	0.0	2.1	3	0	0	3	3	3	0	Anti-repressor	SinI
ENOD93	PF03386.9	gi|379004904|ref|YP_005260576.1|	-	0.029	14.0	1.3	0.029	14.0	0.9	1.6	2	0	0	2	2	2	0	Early	nodulin	93	ENOD93	protein
DUF3989	PF13150.1	gi|379004904|ref|YP_005260576.1|	-	0.16	11.4	0.5	1.1	8.7	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3989)
Baculo_PEP_C	PF04513.7	gi|379004905|ref|YP_005260577.1|	-	5.6e-06	26.2	0.4	0.0011	18.8	0.1	1.9	1	1	1	2	2	2	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IncA	PF04156.9	gi|379004905|ref|YP_005260577.1|	-	3.3e-05	23.5	5.9	4.1e-05	23.2	4.1	1.3	1	0	0	1	1	1	1	IncA	protein
MAP65_ASE1	PF03999.7	gi|379004905|ref|YP_005260577.1|	-	0.00042	19.0	6.0	0.00047	18.9	4.2	1.0	1	0	0	1	1	1	1	Microtubule	associated	protein	(MAP65/ASE1	family)
Med4	PF10018.4	gi|379004905|ref|YP_005260577.1|	-	0.00046	19.6	3.6	0.00065	19.1	2.5	1.3	1	0	0	1	1	1	1	Vitamin-D-receptor	interacting	Mediator	subunit	4
Apolipoprotein	PF01442.13	gi|379004905|ref|YP_005260577.1|	-	0.00055	19.4	3.2	0.00074	19.0	2.2	1.1	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
Reo_sigmaC	PF04582.7	gi|379004905|ref|YP_005260577.1|	-	0.00058	19.1	0.5	0.00064	18.9	0.3	1.1	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
DUF1664	PF07889.7	gi|379004905|ref|YP_005260577.1|	-	0.00061	19.5	3.5	0.0051	16.6	2.2	2.2	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF1664)
DUF3584	PF12128.3	gi|379004905|ref|YP_005260577.1|	-	0.00076	16.9	2.0	0.00076	16.9	1.4	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
SF-assemblin	PF06705.6	gi|379004905|ref|YP_005260577.1|	-	0.00084	18.5	6.3	0.0011	18.1	4.4	1.2	1	0	0	1	1	1	1	SF-assemblin/beta	giardin
COG2	PF06148.6	gi|379004905|ref|YP_005260577.1|	-	0.00088	19.1	3.5	0.00088	19.1	2.4	1.9	1	1	1	2	2	2	1	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
CALCOCO1	PF07888.6	gi|379004905|ref|YP_005260577.1|	-	0.001	17.4	5.6	0.0013	17.1	3.9	1.0	1	0	0	1	1	1	1	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
Sec5	PF15469.1	gi|379004905|ref|YP_005260577.1|	-	0.0011	18.6	2.3	0.0014	18.4	1.6	1.1	1	0	0	1	1	1	1	Exocyst	complex	component	Sec5
YlqD	PF11068.3	gi|379004905|ref|YP_005260577.1|	-	0.0014	18.6	0.9	0.0022	18.0	0.7	1.4	1	0	0	1	1	1	1	YlqD	protein
HAUS5	PF14817.1	gi|379004905|ref|YP_005260577.1|	-	0.0015	17.1	2.2	0.0015	17.1	1.5	1.1	1	0	0	1	1	1	1	HAUS	augmin-like	complex	subunit	5
IFT57	PF10498.4	gi|379004905|ref|YP_005260577.1|	-	0.0017	17.1	2.1	0.0022	16.8	1.5	1.3	1	0	0	1	1	1	1	Intra-flagellar	transport	protein	57
AAA_13	PF13166.1	gi|379004905|ref|YP_005260577.1|	-	0.0019	16.7	1.6	0.0021	16.5	1.1	1.0	1	0	0	1	1	1	1	AAA	domain
KAR9	PF08580.5	gi|379004905|ref|YP_005260577.1|	-	0.0024	16.2	2.1	0.0038	15.5	1.5	1.2	1	0	0	1	1	1	1	Yeast	cortical	protein	KAR9
Prefoldin_2	PF01920.15	gi|379004905|ref|YP_005260577.1|	-	0.0025	17.5	3.1	0.0025	17.5	2.1	2.6	2	1	1	3	3	2	1	Prefoldin	subunit
DegS	PF05384.6	gi|379004905|ref|YP_005260577.1|	-	0.0027	16.9	1.9	0.0048	16.1	1.3	1.5	1	0	0	1	1	1	1	Sensor	protein	DegS
HALZ	PF02183.13	gi|379004905|ref|YP_005260577.1|	-	0.0031	17.1	1.5	0.01	15.5	0.7	2.2	1	1	0	1	1	1	1	Homeobox	associated	leucine	zipper
NPV_P10	PF05531.7	gi|379004905|ref|YP_005260577.1|	-	0.0035	17.5	1.0	0.018	15.2	0.2	2.2	2	1	1	3	3	2	1	Nucleopolyhedrovirus	P10	protein
GrpE	PF01025.14	gi|379004905|ref|YP_005260577.1|	-	0.0036	16.8	1.9	0.0036	16.8	1.3	1.6	2	0	0	2	2	1	1	GrpE
FH2	PF02181.18	gi|379004905|ref|YP_005260577.1|	-	0.0043	15.9	0.9	0.0047	15.8	0.6	1.2	1	0	0	1	1	1	1	Formin	Homology	2	Domain
DUF3375	PF11855.3	gi|379004905|ref|YP_005260577.1|	-	0.0045	15.7	2.4	0.0066	15.2	1.6	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3375)
DUF812	PF05667.6	gi|379004905|ref|YP_005260577.1|	-	0.0059	15.1	1.0	0.0065	15.0	0.7	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF812)
Atg14	PF10186.4	gi|379004905|ref|YP_005260577.1|	-	0.0059	15.6	4.0	0.008	15.1	2.7	1.3	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
FlxA	PF14282.1	gi|379004905|ref|YP_005260577.1|	-	0.0064	16.4	0.6	0.032	14.1	0.4	2.0	1	1	0	1	1	1	1	FlxA-like	protein
TPR_MLP1_2	PF07926.7	gi|379004905|ref|YP_005260577.1|	-	0.0074	16.0	2.0	0.011	15.4	1.4	1.3	1	0	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
AAA_32	PF13654.1	gi|379004905|ref|YP_005260577.1|	-	0.0083	14.8	1.8	0.0095	14.6	1.2	1.1	1	0	0	1	1	1	1	AAA	domain
Ax_dynein_light	PF10211.4	gi|379004905|ref|YP_005260577.1|	-	0.0089	15.8	4.7	0.01	15.6	2.9	1.3	1	1	0	1	1	1	1	Axonemal	dynein	light	chain
RmuC	PF02646.11	gi|379004905|ref|YP_005260577.1|	-	0.0097	14.7	3.8	0.049	12.4	0.5	2.0	1	1	1	2	2	2	1	RmuC	family
Bacillus_HBL	PF05791.6	gi|379004905|ref|YP_005260577.1|	-	0.01	15.2	0.8	0.015	14.6	0.5	1.3	1	0	0	1	1	1	0	Bacillus	haemolytic	enterotoxin	(HBL)
Zw10	PF06248.8	gi|379004905|ref|YP_005260577.1|	-	0.011	13.9	4.5	0.011	13.9	3.1	1.0	1	0	0	1	1	1	0	Centromere/kinetochore	Zw10
OmpH	PF03938.9	gi|379004905|ref|YP_005260577.1|	-	0.011	15.6	0.4	0.016	15.1	0.3	1.3	1	0	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Fzo_mitofusin	PF04799.8	gi|379004905|ref|YP_005260577.1|	-	0.011	15.1	4.6	0.1	12.0	2.1	2.1	1	1	1	2	2	2	0	fzo-like	conserved	region
Syntaxin-6_N	PF09177.6	gi|379004905|ref|YP_005260577.1|	-	0.014	15.7	3.6	0.23	11.8	0.3	2.2	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Fmp27_WPPW	PF10359.4	gi|379004905|ref|YP_005260577.1|	-	0.016	13.6	2.0	0.019	13.4	1.4	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
APG6	PF04111.7	gi|379004905|ref|YP_005260577.1|	-	0.016	14.2	3.2	0.018	14.1	2.2	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
SPX	PF03105.14	gi|379004905|ref|YP_005260577.1|	-	0.023	14.4	4.1	0.037	13.8	2.8	1.5	1	1	0	1	1	1	0	SPX	domain
Laminin_II	PF06009.7	gi|379004905|ref|YP_005260577.1|	-	0.025	14.3	1.2	0.044	13.5	0.9	1.5	1	0	0	1	1	1	0	Laminin	Domain	II
COG5	PF10392.4	gi|379004905|ref|YP_005260577.1|	-	0.027	14.4	4.9	0.13	12.2	3.0	2.0	1	1	1	2	2	2	0	Golgi	transport	complex	subunit	5
FlgN	PF05130.7	gi|379004905|ref|YP_005260577.1|	-	0.027	14.7	3.5	0.044	14.0	2.4	1.2	1	0	0	1	1	1	0	FlgN	protein
Ead_Ea22	PF13935.1	gi|379004905|ref|YP_005260577.1|	-	0.028	14.7	3.0	0.039	14.2	2.0	1.2	1	0	0	1	1	1	0	Ead/Ea22-like	protein
Mnd1	PF03962.10	gi|379004905|ref|YP_005260577.1|	-	0.028	14.1	5.1	0.059	13.0	3.4	1.7	1	1	0	1	1	1	0	Mnd1	family
ALIX_LYPXL_bnd	PF13949.1	gi|379004905|ref|YP_005260577.1|	-	0.028	13.3	6.1	0.034	13.1	4.2	1.2	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
Mod_r	PF07200.8	gi|379004905|ref|YP_005260577.1|	-	0.03	14.2	4.0	0.036	13.9	2.7	1.2	1	0	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
GAS	PF13851.1	gi|379004905|ref|YP_005260577.1|	-	0.03	13.5	8.0	0.039	13.1	5.5	1.3	1	1	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
DUF4618	PF15397.1	gi|379004905|ref|YP_005260577.1|	-	0.031	13.6	5.3	0.057	12.7	0.8	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
HAUS-augmin3	PF14932.1	gi|379004905|ref|YP_005260577.1|	-	0.031	13.4	3.2	0.034	13.3	2.2	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	3
Sipho_Gp157	PF05565.6	gi|379004905|ref|YP_005260577.1|	-	0.031	13.8	1.5	0.045	13.3	1.1	1.4	1	0	0	1	1	1	0	Siphovirus	Gp157
CorA	PF01544.13	gi|379004905|ref|YP_005260577.1|	-	0.031	13.2	4.8	0.039	12.9	3.3	1.2	1	0	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
PTRF_SDPR	PF15237.1	gi|379004905|ref|YP_005260577.1|	-	0.032	13.6	2.1	0.068	12.5	1.3	1.7	1	1	0	1	1	1	0	PTRF/SDPR	family
bZIP_1	PF00170.16	gi|379004905|ref|YP_005260577.1|	-	0.033	14.1	7.3	0.065	13.1	1.2	3.0	1	1	2	3	3	3	0	bZIP	transcription	factor
DUF972	PF06156.8	gi|379004905|ref|YP_005260577.1|	-	0.035	14.4	6.0	0.047	14.0	3.4	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF342	PF03961.8	gi|379004905|ref|YP_005260577.1|	-	0.04	12.3	4.2	0.047	12.0	2.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
DUF1515	PF07439.6	gi|379004905|ref|YP_005260577.1|	-	0.04	13.7	3.2	0.085	12.6	2.2	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1515)
Pox_A_type_inc	PF04508.7	gi|379004905|ref|YP_005260577.1|	-	0.042	13.6	12.4	0.19	11.6	0.8	4.0	2	2	1	3	3	3	0	Viral	A-type	inclusion	protein	repeat
Prefoldin	PF02996.12	gi|379004905|ref|YP_005260577.1|	-	0.042	13.4	3.7	0.36	10.5	0.9	2.4	1	1	1	2	2	2	0	Prefoldin	subunit
ApoLp-III	PF07464.6	gi|379004905|ref|YP_005260577.1|	-	0.045	13.7	2.0	0.056	13.4	1.4	1.1	1	0	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
Nsp1_C	PF05064.8	gi|379004905|ref|YP_005260577.1|	-	0.046	13.3	2.9	0.078	12.6	0.9	1.9	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
Snf7	PF03357.16	gi|379004905|ref|YP_005260577.1|	-	0.046	13.1	4.6	0.46	9.8	3.2	2.2	1	1	0	1	1	1	0	Snf7
L31	PF09784.4	gi|379004905|ref|YP_005260577.1|	-	0.046	13.7	2.7	0.62	10.1	0.2	2.4	1	1	1	2	2	2	0	Mitochondrial	ribosomal	protein	L31
Spectrin	PF00435.16	gi|379004905|ref|YP_005260577.1|	-	0.048	13.9	0.9	0.091	13.0	0.6	1.5	1	0	0	1	1	1	0	Spectrin	repeat
AbiH	PF14253.1	gi|379004905|ref|YP_005260577.1|	-	0.048	13.2	0.2	0.059	12.9	0.2	1.2	1	0	0	1	1	1	0	Bacteriophage	abortive	infection	AbiH
Lebercilin	PF15619.1	gi|379004905|ref|YP_005260577.1|	-	0.049	13.0	8.3	0.077	12.4	5.3	1.6	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Nup54	PF13874.1	gi|379004905|ref|YP_005260577.1|	-	0.049	13.2	2.3	0.077	12.6	1.6	1.4	1	0	0	1	1	1	0	Nucleoporin	complex	subunit	54
DUF1640	PF07798.6	gi|379004905|ref|YP_005260577.1|	-	0.052	13.5	4.7	0.065	13.2	3.3	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
TBPIP	PF07106.8	gi|379004905|ref|YP_005260577.1|	-	0.054	13.0	9.5	0.068	12.7	4.2	1.9	1	1	1	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
XhlA	PF10779.4	gi|379004905|ref|YP_005260577.1|	-	0.057	13.3	5.0	0.068	13.0	0.8	2.3	1	1	1	2	2	2	0	Haemolysin	XhlA
DUF4446	PF14584.1	gi|379004905|ref|YP_005260577.1|	-	0.058	13.2	1.4	0.092	12.5	0.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
Lectin_N	PF03954.9	gi|379004905|ref|YP_005260577.1|	-	0.06	12.7	1.4	0.14	11.6	0.6	1.9	1	1	0	1	1	1	0	Hepatic	lectin,	N-terminal	domain
HSBP1	PF06825.7	gi|379004905|ref|YP_005260577.1|	-	0.063	12.8	4.4	3.6	7.2	0.1	2.6	1	1	1	2	2	2	0	Heat	shock	factor	binding	protein	1
DUF4164	PF13747.1	gi|379004905|ref|YP_005260577.1|	-	0.067	13.3	7.6	0.5	10.5	5.3	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
Spc7	PF08317.6	gi|379004905|ref|YP_005260577.1|	-	0.068	11.8	8.4	0.087	11.4	5.8	1.1	1	0	0	1	1	1	0	Spc7	kinetochore	protein
V_ATPase_I	PF01496.14	gi|379004905|ref|YP_005260577.1|	-	0.071	10.9	1.6	0.071	10.9	1.1	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
FlaC_arch	PF05377.6	gi|379004905|ref|YP_005260577.1|	-	0.074	12.9	5.7	0.49	10.3	3.9	2.5	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
PSD4	PF07631.6	gi|379004905|ref|YP_005260577.1|	-	0.076	13.3	0.3	0.088	13.1	0.2	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1592)
HSCB_C	PF07743.8	gi|379004905|ref|YP_005260577.1|	-	0.077	13.4	5.3	0.97	9.9	0.9	2.5	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
Prominin	PF05478.6	gi|379004905|ref|YP_005260577.1|	-	0.084	10.4	1.6	0.088	10.3	1.1	1.1	1	0	0	1	1	1	0	Prominin
Phage_GP20	PF06810.6	gi|379004905|ref|YP_005260577.1|	-	0.086	12.2	3.8	0.23	10.8	1.9	1.9	1	1	1	2	2	2	0	Phage	minor	structural	protein	GP20
LOH1CR12	PF10158.4	gi|379004905|ref|YP_005260577.1|	-	0.088	12.5	1.1	0.19	11.5	0.8	1.7	1	1	0	1	1	1	0	Tumour	suppressor	protein
Fib_alpha	PF08702.5	gi|379004905|ref|YP_005260577.1|	-	0.088	12.9	2.4	0.38	10.8	1.0	2.0	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
HalX	PF08663.5	gi|379004905|ref|YP_005260577.1|	-	0.092	12.7	4.8	6.4	6.8	0.4	3.0	1	1	1	2	2	2	0	HalX	domain
Tropomyosin_1	PF12718.2	gi|379004905|ref|YP_005260577.1|	-	0.095	12.5	6.1	0.13	12.1	4.2	1.2	1	0	0	1	1	1	0	Tropomyosin	like
Orthopox_A5L	PF06193.6	gi|379004905|ref|YP_005260577.1|	-	0.096	12.6	0.8	0.13	12.2	0.6	1.4	1	0	0	1	1	1	0	Orthopoxvirus	A5L	protein-like
Spc24	PF08286.6	gi|379004905|ref|YP_005260577.1|	-	0.098	12.3	2.3	0.18	11.4	1.5	1.6	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Occludin_ELL	PF07303.8	gi|379004905|ref|YP_005260577.1|	-	0.11	13.2	2.7	7.5	7.3	0.6	2.5	1	1	1	2	2	2	0	Occludin	homology	domain
Seryl_tRNA_N	PF02403.17	gi|379004905|ref|YP_005260577.1|	-	0.11	12.5	6.1	0.31	11.0	3.8	2.1	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF2317	PF10079.4	gi|379004905|ref|YP_005260577.1|	-	0.11	11.0	1.3	0.12	10.9	0.9	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
Gp-FAR-1	PF05823.7	gi|379004905|ref|YP_005260577.1|	-	0.11	12.4	4.1	0.19	11.6	1.5	1.9	1	1	1	2	2	2	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
Mitofilin	PF09731.4	gi|379004905|ref|YP_005260577.1|	-	0.12	11.0	5.1	0.14	10.7	3.6	1.1	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
DUF3373	PF11853.3	gi|379004905|ref|YP_005260577.1|	-	0.12	10.8	0.6	0.13	10.7	0.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
MutS_IV	PF05190.13	gi|379004905|ref|YP_005260577.1|	-	0.13	12.4	6.5	0.45	10.7	1.9	2.7	1	1	1	2	2	2	0	MutS	family	domain	IV
GBP_C	PF02841.9	gi|379004905|ref|YP_005260577.1|	-	0.14	11.2	2.7	0.17	11.0	1.9	1.1	1	0	0	1	1	1	0	Guanylate-binding	protein,	C-terminal	domain
CENP-Q	PF13094.1	gi|379004905|ref|YP_005260577.1|	-	0.14	12.1	6.6	0.36	10.8	4.3	1.8	1	1	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
DUF641	PF04859.7	gi|379004905|ref|YP_005260577.1|	-	0.15	11.8	3.5	0.2	11.4	2.4	1.3	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF641)
DUF2730	PF10805.3	gi|379004905|ref|YP_005260577.1|	-	0.16	11.7	3.4	0.92	9.2	2.3	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
ECM11	PF15463.1	gi|379004905|ref|YP_005260577.1|	-	0.16	12.2	6.8	0.37	11.0	2.2	2.1	1	1	1	2	2	2	0	Extracellular	mutant	protein	11
Syntaxin_2	PF14523.1	gi|379004905|ref|YP_005260577.1|	-	0.17	11.9	3.7	0.56	10.2	2.1	2.1	1	1	0	1	1	1	0	Syntaxin-like	protein
TMPIT	PF07851.8	gi|379004905|ref|YP_005260577.1|	-	0.17	10.9	0.7	0.21	10.6	0.5	1.1	1	0	0	1	1	1	0	TMPIT-like	protein
ISG65-75	PF11727.3	gi|379004905|ref|YP_005260577.1|	-	0.17	10.8	1.2	0.23	10.4	0.8	1.2	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
DASH_Dam1	PF08653.5	gi|379004905|ref|YP_005260577.1|	-	0.17	11.6	3.6	15	5.4	0.3	3.0	1	1	2	3	3	3	0	DASH	complex	subunit	Dam1
phiKZ_IP	PF12699.2	gi|379004905|ref|YP_005260577.1|	-	0.17	10.7	2.6	0.24	10.3	1.8	1.1	1	0	0	1	1	1	0	phiKZ-like	phage	internal	head	proteins
TRCF	PF03461.10	gi|379004905|ref|YP_005260577.1|	-	0.18	11.8	2.1	8.3	6.4	0.0	2.2	1	1	1	2	2	2	0	TRCF	domain
Med9	PF07544.8	gi|379004905|ref|YP_005260577.1|	-	0.18	11.5	4.1	0.35	10.6	2.9	1.5	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
LXG	PF04740.7	gi|379004905|ref|YP_005260577.1|	-	0.19	11.4	2.5	0.26	11.0	1.4	1.5	1	1	0	1	1	1	0	LXG	domain	of	WXG	superfamily
DUF2365	PF10157.4	gi|379004905|ref|YP_005260577.1|	-	0.21	11.4	2.6	6.8	6.5	0.3	2.6	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2365)
Tnp_P_element	PF12017.3	gi|379004905|ref|YP_005260577.1|	-	0.22	10.7	3.6	0.48	9.6	1.8	1.9	1	1	1	2	2	2	0	Transposase	protein
DUF3287	PF11690.3	gi|379004905|ref|YP_005260577.1|	-	0.22	11.6	8.7	0.85	9.7	5.8	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3287)
DUF848	PF05852.6	gi|379004905|ref|YP_005260577.1|	-	0.24	11.2	8.5	0.81	9.5	2.1	2.1	1	1	1	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
DivIC	PF04977.10	gi|379004905|ref|YP_005260577.1|	-	0.24	10.9	2.4	1.3	8.5	1.6	2.3	1	1	0	1	1	1	0	Septum	formation	initiator
Syntaxin	PF00804.20	gi|379004905|ref|YP_005260577.1|	-	0.25	11.4	8.0	2	8.5	5.5	2.0	1	1	0	1	1	1	0	Syntaxin
MbeD_MobD	PF04899.7	gi|379004905|ref|YP_005260577.1|	-	0.26	11.2	1.4	0.58	10.0	0.3	2.2	2	1	0	2	2	1	0	MbeD/MobD	like
KxDL	PF10241.4	gi|379004905|ref|YP_005260577.1|	-	0.28	11.1	3.4	0.66	9.9	1.5	2.1	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
TMF_TATA_bd	PF12325.3	gi|379004905|ref|YP_005260577.1|	-	0.28	10.9	10.1	0.59	9.8	5.7	2.1	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
TMF_DNA_bd	PF12329.3	gi|379004905|ref|YP_005260577.1|	-	0.3	10.9	8.1	1.2	8.9	5.2	2.3	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF1319	PF07028.6	gi|379004905|ref|YP_005260577.1|	-	0.31	11.2	7.4	4.7	7.4	5.1	2.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1319)
ADIP	PF11559.3	gi|379004905|ref|YP_005260577.1|	-	0.33	10.8	6.5	0.78	9.6	4.5	1.7	1	1	0	1	1	1	0	Afadin-	and	alpha	-actinin-Binding
Hemagglutinin	PF00509.13	gi|379004905|ref|YP_005260577.1|	-	0.36	8.9	1.8	0.45	8.5	1.3	1.1	1	0	0	1	1	1	0	Haemagglutinin
FTA4	PF13093.1	gi|379004905|ref|YP_005260577.1|	-	0.4	10.0	6.1	1.7	8.0	4.2	1.8	1	1	0	1	1	1	0	Kinetochore	complex	Fta4	of	Sim4	subunit,	or	CENP-50
Striatin	PF08232.7	gi|379004905|ref|YP_005260577.1|	-	0.43	10.8	6.5	1.2	9.5	3.0	2.0	1	1	1	2	2	2	0	Striatin	family
DUF2450	PF10475.4	gi|379004905|ref|YP_005260577.1|	-	0.46	9.3	4.9	0.6	8.9	3.4	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
zf-C4H2	PF10146.4	gi|379004905|ref|YP_005260577.1|	-	0.48	10.4	3.9	0.56	10.1	2.7	1.2	1	0	0	1	1	1	0	Zinc	finger-containing	protein
Cortex-I_coil	PF09304.5	gi|379004905|ref|YP_005260577.1|	-	0.53	10.3	10.4	1.4	9.0	7.2	1.8	1	1	0	1	1	1	0	Cortexillin	I,	coiled	coil
KH_2	PF07650.12	gi|379004905|ref|YP_005260577.1|	-	0.55	9.8	2.7	4.9	6.7	0.4	2.5	1	1	1	2	2	2	0	KH	domain
DUF4140	PF13600.1	gi|379004905|ref|YP_005260577.1|	-	0.58	10.6	4.5	31	5.0	2.9	2.7	1	1	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF883	PF05957.8	gi|379004905|ref|YP_005260577.1|	-	0.59	10.5	3.9	0.82	10.1	1.5	1.9	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Kinetocho_Slk19	PF12709.2	gi|379004905|ref|YP_005260577.1|	-	0.69	10.0	5.0	0.35	10.9	1.0	2.2	2	1	1	3	3	2	0	Central	kinetochore-associated
Cauli_AT	PF03233.8	gi|379004905|ref|YP_005260577.1|	-	0.73	9.5	4.4	2.3	7.8	2.8	1.9	1	1	0	1	1	1	0	Aphid	transmission	protein
Exonuc_VII_L	PF02601.10	gi|379004905|ref|YP_005260577.1|	-	0.75	8.9	3.6	0.89	8.6	2.3	1.3	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
SlyX	PF04102.7	gi|379004905|ref|YP_005260577.1|	-	0.87	10.0	3.6	3.2	8.2	0.6	2.8	1	1	2	3	3	3	0	SlyX
YgaB	PF14182.1	gi|379004905|ref|YP_005260577.1|	-	1.3	9.2	5.5	11	6.3	3.8	2.4	1	1	0	1	1	1	0	YgaB-like	protein
DUF1451	PF07295.6	gi|379004905|ref|YP_005260577.1|	-	1.3	8.7	4.1	1.3	8.8	1.8	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1451)
UPF0449	PF15136.1	gi|379004905|ref|YP_005260577.1|	-	1.7	8.8	4.9	15	5.8	0.1	2.3	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0449
Vac_Fusion	PF02346.11	gi|379004905|ref|YP_005260577.1|	-	3.5	7.1	6.7	4.4	6.7	3.0	2.2	2	0	0	2	2	2	0	Chordopoxvirus	fusion	protein
DUF2312	PF10073.4	gi|379004905|ref|YP_005260577.1|	-	3.8	6.9	7.7	0.47	9.8	0.8	2.7	2	1	2	4	4	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
DASH_Dad3	PF08656.5	gi|379004905|ref|YP_005260577.1|	-	4.3	7.0	8.5	49	3.7	5.3	2.7	1	1	0	1	1	1	0	DASH	complex	subunit	Dad3
CCDC-167	PF15188.1	gi|379004905|ref|YP_005260577.1|	-	4.5	7.2	9.8	5.4	7.0	4.3	2.4	1	1	2	3	3	3	0	Coiled-coil	domain-containing	protein	167
Polysacc_synt_3	PF13440.1	gi|379004909|ref|YP_005260581.1|	-	0.086	12.2	2.6	0.12	11.8	1.8	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
SBP_bac_1	PF01547.20	gi|379004911|ref|YP_005260583.1|	-	3e-26	92.8	0.1	4.4e-26	92.3	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|379004911|ref|YP_005260583.1|	-	2.9e-17	63.3	0.0	4e-17	62.8	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.17	gi|379004913|ref|YP_005260585.1|	-	4.2e-09	36.1	20.6	3.6e-08	33.1	14.3	2.1	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379004914|ref|YP_005260586.1|	-	9.3e-11	41.5	16.8	9.3e-11	41.5	11.7	1.9	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|379004915|ref|YP_005260587.1|	-	3.2e-32	111.7	0.0	4.3e-32	111.2	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379004915|ref|YP_005260587.1|	-	3.7e-08	33.6	0.0	4.7e-05	23.5	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|379004915|ref|YP_005260587.1|	-	0.00033	20.3	0.0	0.0009	18.9	0.0	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_15	PF13175.1	gi|379004915|ref|YP_005260587.1|	-	0.00035	19.7	0.0	0.0015	17.6	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
TOBE_2	PF08402.5	gi|379004915|ref|YP_005260587.1|	-	0.00049	20.0	0.0	0.0014	18.5	0.0	1.8	1	0	0	1	1	1	1	TOBE	domain
DUF258	PF03193.11	gi|379004915|ref|YP_005260587.1|	-	0.0011	18.1	0.0	0.0022	17.1	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|379004915|ref|YP_005260587.1|	-	0.0015	18.0	0.0	0.0041	16.6	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|379004915|ref|YP_005260587.1|	-	0.0028	16.9	0.0	0.27	10.4	0.0	2.0	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|379004915|ref|YP_005260587.1|	-	0.0033	17.4	0.0	0.0057	16.6	0.0	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379004915|ref|YP_005260587.1|	-	0.0067	15.8	0.0	0.15	11.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SbcCD_C	PF13558.1	gi|379004915|ref|YP_005260587.1|	-	0.0069	16.2	0.0	0.055	13.4	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
T2SE	PF00437.15	gi|379004915|ref|YP_005260587.1|	-	0.015	14.2	0.0	0.028	13.3	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
RuvB_N	PF05496.7	gi|379004915|ref|YP_005260587.1|	-	0.033	13.2	0.1	0.6	9.1	0.0	2.2	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_23	PF13476.1	gi|379004915|ref|YP_005260587.1|	-	0.056	13.7	0.0	0.092	13.0	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|379004915|ref|YP_005260587.1|	-	0.061	12.7	0.0	0.18	11.1	0.0	1.8	2	0	0	2	2	2	0	AAA-like	domain
NACHT	PF05729.7	gi|379004915|ref|YP_005260587.1|	-	0.099	12.2	0.1	1.8	8.2	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
MutS_V	PF00488.16	gi|379004915|ref|YP_005260587.1|	-	0.12	11.7	0.0	0.24	10.7	0.0	1.4	1	0	0	1	1	1	0	MutS	domain	V
SBP_bac_1	PF01547.20	gi|379004916|ref|YP_005260588.1|	-	6.8e-28	98.2	0.5	9.5e-28	97.8	0.3	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|379004916|ref|YP_005260588.1|	-	5.1e-20	72.3	0.0	7e-20	71.9	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
PDGF_N	PF04692.8	gi|379004916|ref|YP_005260588.1|	-	0.13	12.7	0.0	0.33	11.4	0.0	1.6	1	0	0	1	1	1	0	Platelet-derived	growth	factor,	N	terminal	region
Glyco_transf_21	PF13506.1	gi|379004917|ref|YP_005260589.1|	-	1.2e-09	37.6	0.1	1.9e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_3	PF13641.1	gi|379004917|ref|YP_005260589.1|	-	1.5e-09	37.9	0.3	2.1e-09	37.5	0.2	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|379004917|ref|YP_005260589.1|	-	5.2e-05	22.9	0.0	8.6e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_trans_2_3	PF13632.1	gi|379004917|ref|YP_005260589.1|	-	0.034	13.8	3.4	0.054	13.1	2.4	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	family	group	2
UbiA	PF01040.13	gi|379004918|ref|YP_005260590.1|	-	1.7e-24	86.4	27.4	2.2e-24	86.0	19.0	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
SQS_PSY	PF00494.14	gi|379004919|ref|YP_005260591.1|	-	1.1e-54	185.5	3.1	1.3e-54	185.2	2.1	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
DAO	PF01266.19	gi|379004920|ref|YP_005260592.1|	-	4.6e-14	52.0	2.7	2.9e-06	26.4	0.9	2.3	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|379004920|ref|YP_005260592.1|	-	1.1e-13	51.0	1.5	2.5e-13	49.8	0.4	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Amino_oxidase	PF01593.19	gi|379004920|ref|YP_005260592.1|	-	7.1e-12	45.1	1.7	1.8e-08	33.9	0.1	2.2	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004920|ref|YP_005260592.1|	-	2.8e-10	39.6	2.4	1.1e-05	24.4	1.3	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|379004920|ref|YP_005260592.1|	-	8.9e-05	22.4	0.2	0.00015	21.7	0.1	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|379004920|ref|YP_005260592.1|	-	0.00012	21.2	0.3	0.0002	20.5	0.2	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|379004920|ref|YP_005260592.1|	-	0.00043	18.8	0.6	0.0032	15.9	0.4	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.22	gi|379004920|ref|YP_005260592.1|	-	0.00051	20.3	0.6	0.00051	20.3	0.4	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|379004920|ref|YP_005260592.1|	-	0.00058	18.8	0.1	0.0019	17.1	0.1	1.8	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|379004920|ref|YP_005260592.1|	-	0.00095	18.3	0.7	0.0015	17.6	0.5	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379004920|ref|YP_005260592.1|	-	0.0042	17.1	0.3	0.0071	16.4	0.2	1.3	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|379004920|ref|YP_005260592.1|	-	0.007	15.7	0.2	0.012	15.0	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Thi4	PF01946.12	gi|379004920|ref|YP_005260592.1|	-	0.0083	15.2	0.6	0.014	14.4	0.4	1.3	1	0	0	1	1	1	1	Thi4	family
3HCDH_N	PF02737.13	gi|379004920|ref|YP_005260592.1|	-	0.057	13.0	0.3	0.091	12.4	0.2	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF3397	PF11877.3	gi|379004921|ref|YP_005260593.1|	-	0.0043	17.0	3.7	0.005	16.8	2.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3397)
DUF3353	PF11833.3	gi|379004921|ref|YP_005260593.1|	-	0.037	13.4	1.8	0.052	12.9	1.3	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
FixP_N	PF14715.1	gi|379004921|ref|YP_005260593.1|	-	0.058	12.7	0.8	0.34	10.3	0.7	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
MnhB	PF04039.8	gi|379004921|ref|YP_005260593.1|	-	0.15	12.1	4.4	0.18	11.8	3.0	1.1	1	0	0	1	1	1	0	Domain	related	to	MnhB	subunit	of	Na+/H+	antiporter
DUF2142	PF09913.4	gi|379004921|ref|YP_005260593.1|	-	0.19	10.3	4.0	0.22	10.1	2.7	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2142)
PMT_2	PF13231.1	gi|379004921|ref|YP_005260593.1|	-	0.21	11.4	6.1	0.24	11.2	4.2	1.0	1	0	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF3681	PF12442.3	gi|379004921|ref|YP_005260593.1|	-	0.31	11.2	4.2	0.094	12.8	0.6	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3681)
Polysacc_synt_C	PF14667.1	gi|379004921|ref|YP_005260593.1|	-	0.73	9.6	7.7	1	9.1	5.3	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
DoxX_2	PF13564.1	gi|379004921|ref|YP_005260593.1|	-	2.8	7.9	11.4	3.5	7.6	2.0	2.2	1	1	1	2	2	2	0	DoxX-like	family
CstA	PF02554.9	gi|379004923|ref|YP_005260595.1|	-	1.1e-118	396.1	28.2	1.1e-118	396.1	19.6	2.3	1	1	1	2	2	2	1	Carbon	starvation	protein	CstA
DUF4161	PF13722.1	gi|379004923|ref|YP_005260595.1|	-	7.9e-18	64.9	12.7	7.9e-18	64.9	8.8	3.2	3	1	0	3	3	3	1	C-terminal	domain	on	CstA	(DUF4161)
KNOX2	PF03791.8	gi|379004924|ref|YP_005260596.1|	-	0.036	13.3	2.5	0.53	9.6	0.1	2.7	2	1	0	2	2	2	0	KNOX2	domain
NPIP	PF06409.6	gi|379004924|ref|YP_005260596.1|	-	0.041	12.6	0.1	0.051	12.3	0.1	1.1	1	0	0	1	1	1	0	Nuclear	pore	complex	interacting	protein	(NPIP)
HTH_19	PF12844.2	gi|379004924|ref|YP_005260596.1|	-	0.086	12.9	0.2	0.15	12.1	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
ArsA_ATPase	PF02374.10	gi|379004926|ref|YP_005260598.1|	-	3.1e-64	216.9	0.0	7e-64	215.7	0.0	1.5	1	1	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|379004926|ref|YP_005260598.1|	-	2e-18	66.4	0.2	4.2e-18	65.4	0.1	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.13	gi|379004926|ref|YP_005260598.1|	-	1e-05	24.8	0.7	0.00019	20.6	0.1	2.3	2	1	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.1	gi|379004926|ref|YP_005260598.1|	-	3.8e-05	23.6	0.1	0.0017	18.2	0.0	2.7	3	0	0	3	3	2	1	AAA	domain
AAA_25	PF13481.1	gi|379004926|ref|YP_005260598.1|	-	0.00015	21.2	1.0	0.00088	18.7	0.1	2.5	2	2	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|379004926|ref|YP_005260598.1|	-	0.00046	19.6	0.3	0.00094	18.6	0.2	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_10	PF12846.2	gi|379004926|ref|YP_005260598.1|	-	0.00049	19.6	0.0	0.00092	18.7	0.0	1.5	1	1	0	1	1	1	1	AAA-like	domain
KaiC	PF06745.8	gi|379004926|ref|YP_005260598.1|	-	0.002	17.2	0.1	0.038	13.0	0.0	2.1	2	0	0	2	2	2	1	KaiC
YhjQ	PF06564.7	gi|379004926|ref|YP_005260598.1|	-	0.002	17.5	0.2	0.0036	16.6	0.1	1.4	1	0	0	1	1	1	1	YhjQ	protein
AAA_26	PF13500.1	gi|379004926|ref|YP_005260598.1|	-	0.0022	17.6	1.8	0.0091	15.6	0.1	2.1	2	0	0	2	2	2	1	AAA	domain
PhoH	PF02562.11	gi|379004926|ref|YP_005260598.1|	-	0.0038	16.4	0.1	0.0068	15.6	0.0	1.4	1	0	0	1	1	1	1	PhoH-like	protein
SRP54	PF00448.17	gi|379004926|ref|YP_005260598.1|	-	0.0047	16.3	0.1	0.1	12.0	0.1	2.3	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_19	PF13245.1	gi|379004926|ref|YP_005260598.1|	-	0.0057	16.3	0.7	0.015	15.0	0.5	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
NTPase_1	PF03266.10	gi|379004926|ref|YP_005260598.1|	-	0.0071	16.0	0.3	1.1	8.9	0.0	2.4	2	0	0	2	2	2	1	NTPase
tRNA-synt_1e	PF01406.14	gi|379004926|ref|YP_005260598.1|	-	0.015	14.4	0.0	0.054	12.6	0.0	1.8	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(C)	catalytic	domain
ParA	PF10609.4	gi|379004926|ref|YP_005260598.1|	-	0.021	14.7	0.1	0.098	12.5	0.0	2.2	2	1	0	2	2	2	0	ParA/MinD	ATPase	like
NACHT	PF05729.7	gi|379004926|ref|YP_005260598.1|	-	0.022	14.4	0.3	0.04	13.5	0.2	1.4	1	0	0	1	1	1	0	NACHT	domain
MipZ	PF09140.6	gi|379004926|ref|YP_005260598.1|	-	0.062	12.3	0.3	0.65	9.0	0.1	2.1	2	0	0	2	2	2	0	ATPase	MipZ
APS_kinase	PF01583.15	gi|379004926|ref|YP_005260598.1|	-	0.062	12.9	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
NB-ARC	PF00931.17	gi|379004926|ref|YP_005260598.1|	-	0.064	12.1	0.2	0.12	11.2	0.2	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Zeta_toxin	PF06414.7	gi|379004926|ref|YP_005260598.1|	-	0.13	11.3	0.0	0.29	10.2	0.0	1.7	1	1	0	1	1	1	0	Zeta	toxin
AAA_17	PF13207.1	gi|379004926|ref|YP_005260598.1|	-	0.13	13.0	0.5	0.36	11.6	0.3	2.0	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|379004926|ref|YP_005260598.1|	-	0.14	10.9	0.6	0.29	9.8	0.1	1.7	2	0	0	2	2	2	0	ArgK	protein
PIN	PF01850.16	gi|379004928|ref|YP_005260600.1|	-	1.7e-15	57.3	0.0	2.2e-15	57.0	0.0	1.2	1	0	0	1	1	1	1	PIN	domain
RHH_1	PF01402.16	gi|379004929|ref|YP_005260601.1|	-	3.3e-06	26.7	0.7	4.9e-06	26.1	0.5	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_4	PF13467.1	gi|379004929|ref|YP_005260601.1|	-	2.6e-05	23.9	0.0	3.5e-05	23.5	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_3	PF12651.2	gi|379004929|ref|YP_005260601.1|	-	0.056	13.1	0.0	0.11	12.2	0.0	1.5	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
DUF3408	PF11888.3	gi|379004929|ref|YP_005260601.1|	-	0.095	12.6	0.0	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3408)
MatP	PF06303.7	gi|379004929|ref|YP_005260601.1|	-	0.1	12.5	0.0	0.12	12.2	0.0	1.1	1	0	0	1	1	1	0	Organiser	of	macrodomain	of	Terminus	of	chromosome
HTH_24	PF13412.1	gi|379004932|ref|YP_005260604.1|	-	8.8e-12	44.2	0.2	1.6e-07	30.5	0.0	2.5	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379004932|ref|YP_005260604.1|	-	5.7e-08	32.3	0.0	0.00022	20.8	0.0	2.5	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.1	gi|379004932|ref|YP_005260604.1|	-	9.9e-08	31.4	0.1	3.4e-07	29.6	0.0	1.9	1	0	0	1	1	1	1	Homeodomain-like	domain
MarR_2	PF12802.2	gi|379004932|ref|YP_005260604.1|	-	1.2e-07	31.2	0.3	7.1e-05	22.4	0.0	2.5	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|379004932|ref|YP_005260604.1|	-	3.5e-07	29.7	0.0	7.1e-06	25.5	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
HTH_38	PF13936.1	gi|379004932|ref|YP_005260604.1|	-	9.7e-07	28.2	0.1	6.8e-06	25.5	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|379004932|ref|YP_005260604.1|	-	1.5e-06	27.6	1.1	0.00021	20.7	0.2	2.6	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|379004932|ref|YP_005260604.1|	-	1.6e-06	27.5	0.4	0.31	10.6	0.0	3.3	3	0	0	3	3	3	2	IclR	helix-turn-helix	domain
MarR	PF01047.17	gi|379004932|ref|YP_005260604.1|	-	1.8e-06	27.5	0.0	0.00036	20.1	0.0	2.7	3	0	0	3	3	3	1	MarR	family
HTH_28	PF13518.1	gi|379004932|ref|YP_005260604.1|	-	3.2e-06	27.0	1.1	1.4e-05	24.9	0.1	2.4	2	1	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379004932|ref|YP_005260604.1|	-	8.3e-05	22.6	0.3	0.00091	19.3	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_5	PF01022.15	gi|379004932|ref|YP_005260604.1|	-	0.00011	21.8	0.0	0.003	17.2	0.0	2.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|379004932|ref|YP_005260604.1|	-	0.00012	21.7	0.1	0.0018	18.0	0.0	2.4	2	1	0	2	2	2	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379004932|ref|YP_005260604.1|	-	0.00022	20.6	0.0	0.064	12.7	0.0	2.3	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_8	PF02954.14	gi|379004932|ref|YP_005260604.1|	-	0.0007	19.0	0.2	0.0014	18.1	0.2	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_36	PF13730.1	gi|379004932|ref|YP_005260604.1|	-	0.0021	18.1	0.0	0.0053	16.8	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|379004932|ref|YP_005260604.1|	-	0.0039	16.6	3.7	0.005	16.2	0.2	2.8	3	1	0	3	3	3	1	Sigma-70,	region	4
GntR	PF00392.16	gi|379004932|ref|YP_005260604.1|	-	0.008	15.5	0.0	0.076	12.4	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|379004932|ref|YP_005260604.1|	-	0.011	16.0	0.1	0.37	11.1	0.0	2.5	3	0	0	3	3	2	0	Winged	helix	DNA-binding	domain
HTH_1	PF00126.22	gi|379004932|ref|YP_005260604.1|	-	0.038	13.7	0.0	0.11	12.2	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_Crp_2	PF13545.1	gi|379004932|ref|YP_005260604.1|	-	0.056	13.2	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
LZ_Tnp_IS481	PF13011.1	gi|379004932|ref|YP_005260604.1|	-	0.063	13.6	0.1	0.17	12.2	0.0	1.7	2	0	0	2	2	1	0	leucine-zipper	of	insertion	element	IS481
Terminase_5	PF06056.7	gi|379004932|ref|YP_005260604.1|	-	0.069	12.7	0.2	0.49	9.9	0.0	2.2	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
HhH-GPD	PF00730.20	gi|379004932|ref|YP_005260604.1|	-	0.11	12.8	0.0	0.2	11.9	0.0	1.5	1	0	0	1	1	1	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
Fe_dep_repress	PF01325.14	gi|379004932|ref|YP_005260604.1|	-	0.11	12.4	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.7	gi|379004932|ref|YP_005260604.1|	-	0.15	11.6	0.1	4.2	7.0	0.0	2.9	3	0	0	3	3	3	0	HTH	DNA	binding	domain
DUF973	PF06157.6	gi|379004933|ref|YP_005260605.1|	-	0.012	14.6	15.5	0.025	13.5	10.8	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
SID-1_RNA_chan	PF13965.1	gi|379004933|ref|YP_005260605.1|	-	2	6.4	7.9	2.6	6.1	5.3	1.3	1	1	0	1	1	1	0	dsRNA-gated	channel	SID-1
Caveolin	PF01146.12	gi|379004933|ref|YP_005260605.1|	-	3.7	7.1	8.0	0.44	10.1	2.1	1.8	2	0	0	2	2	2	0	Caveolin
zf-DHHC	PF01529.15	gi|379004934|ref|YP_005260606.1|	-	0.078	12.3	1.2	0.11	11.8	0.8	1.2	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
MutS_IV	PF05190.13	gi|379004935|ref|YP_005260607.1|	-	0.0011	19.0	0.3	0.0017	18.5	0.2	1.3	1	0	0	1	1	1	1	MutS	family	domain	IV
TBCA	PF02970.11	gi|379004935|ref|YP_005260607.1|	-	0.0072	16.3	1.8	0.0098	15.9	1.3	1.2	1	0	0	1	1	1	1	Tubulin	binding	cofactor	A
LIF_OSM	PF01291.12	gi|379004935|ref|YP_005260607.1|	-	0.009	15.9	0.2	0.012	15.5	0.2	1.1	1	0	0	1	1	1	1	LIF	/	OSM	family
Utp12	PF04003.7	gi|379004935|ref|YP_005260607.1|	-	0.011	15.5	0.2	0.016	15.0	0.2	1.3	1	0	0	1	1	1	0	Dip2/Utp12	Family
WEMBL	PF05701.6	gi|379004935|ref|YP_005260607.1|	-	0.02	13.4	0.7	0.02	13.3	0.5	1.0	1	0	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
Hormone_1	PF00103.15	gi|379004935|ref|YP_005260607.1|	-	0.033	13.5	1.1	0.039	13.3	0.8	1.2	1	0	0	1	1	1	0	Somatotropin	hormone	family
Seryl_tRNA_N	PF02403.17	gi|379004935|ref|YP_005260607.1|	-	0.04	13.9	3.8	0.053	13.5	2.7	1.2	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
Mer2	PF09074.5	gi|379004935|ref|YP_005260607.1|	-	0.049	13.5	3.5	0.044	13.6	1.5	1.6	1	1	1	2	2	2	0	Mer2
Jnk-SapK_ap_N	PF09744.4	gi|379004935|ref|YP_005260607.1|	-	0.058	13.3	3.8	0.068	13.1	2.7	1.1	1	0	0	1	1	1	0	JNK_SAPK-associated	protein-1
COG5	PF10392.4	gi|379004935|ref|YP_005260607.1|	-	0.06	13.3	1.3	0.071	13.0	0.9	1.2	1	0	0	1	1	1	0	Golgi	transport	complex	subunit	5
DUF2203	PF09969.4	gi|379004935|ref|YP_005260607.1|	-	0.14	12.3	0.5	0.97	9.6	0.2	1.9	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Cob_adeno_trans	PF01923.13	gi|379004935|ref|YP_005260607.1|	-	0.16	11.7	0.9	0.3	10.8	0.7	1.5	1	1	0	1	1	1	0	Cobalamin	adenosyltransferase
DUF3847	PF12958.2	gi|379004935|ref|YP_005260607.1|	-	0.18	11.6	3.0	0.27	11.0	1.5	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3847)
NPV_P10	PF05531.7	gi|379004935|ref|YP_005260607.1|	-	0.18	12.0	3.7	0.27	11.5	1.5	2.0	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF1664	PF07889.7	gi|379004935|ref|YP_005260607.1|	-	0.2	11.4	1.9	0.3	10.8	1.2	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
KxDL	PF10241.4	gi|379004935|ref|YP_005260607.1|	-	0.2	11.5	1.8	1.1	9.2	0.6	2.3	1	1	1	2	2	2	0	Uncharacterized	conserved	protein
DUF948	PF06103.6	gi|379004935|ref|YP_005260607.1|	-	0.22	11.4	2.7	0.42	10.5	1.1	2.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
YgaB	PF14182.1	gi|379004935|ref|YP_005260607.1|	-	0.23	11.7	2.8	0.39	10.9	1.9	1.6	1	1	0	1	1	1	0	YgaB-like	protein
Matrilin_ccoil	PF10393.4	gi|379004935|ref|YP_005260607.1|	-	0.34	10.2	1.5	12	5.3	0.1	2.3	1	1	1	2	2	2	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
FlaC_arch	PF05377.6	gi|379004935|ref|YP_005260607.1|	-	4.2	7.3	6.1	2.7	7.9	2.1	2.3	1	1	2	3	3	3	0	Flagella	accessory	protein	C	(FlaC)
Hydantoinase_B	PF02538.9	gi|379004936|ref|YP_005260608.1|	-	8.9e-142	472.9	0.0	9.9e-142	472.8	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
Cupin_6	PF12852.2	gi|379004936|ref|YP_005260608.1|	-	0.014	15.0	0.1	0.052	13.1	0.0	1.8	2	0	0	2	2	2	0	Cupin
Hydantoinase_A	PF01968.13	gi|379004937|ref|YP_005260609.1|	-	2.9e-87	292.4	7.9	1.4e-86	290.1	2.4	2.2	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|379004937|ref|YP_005260609.1|	-	3e-46	157.1	0.0	5.7e-46	156.2	0.0	1.5	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
BcrAD_BadFG	PF01869.15	gi|379004937|ref|YP_005260609.1|	-	0.0052	16.1	0.0	0.067	12.4	0.0	2.3	2	1	0	2	2	2	1	BadF/BadG/BcrA/BcrD	ATPase	family
MFS_1	PF07690.11	gi|379004938|ref|YP_005260610.1|	-	1.1e-09	37.5	25.0	1.4e-09	37.1	17.3	1.0	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|379004938|ref|YP_005260610.1|	-	0.0019	16.8	17.4	0.024	13.2	0.6	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
Alpha-amylase	PF00128.19	gi|379004939|ref|YP_005260611.1|	-	7.7e-09	35.3	0.1	1e-08	34.9	0.1	1.1	1	0	0	1	1	1	1	Alpha	amylase,	catalytic	domain
Asp_protease_2	PF13650.1	gi|379004940|ref|YP_005260612.1|	-	1.8e-08	34.7	0.1	2.5e-08	34.2	0.1	1.3	1	1	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.1	gi|379004940|ref|YP_005260612.1|	-	1.1e-07	31.5	0.0	2.2e-07	30.5	0.0	1.6	1	1	0	1	1	1	1	gag-polyprotein	putative	aspartyl	protease
RVP	PF00077.15	gi|379004940|ref|YP_005260612.1|	-	1.5e-05	24.7	0.0	1.9e-05	24.4	0.0	1.1	1	0	0	1	1	1	1	Retroviral	aspartyl	protease
TOBE	PF03459.12	gi|379004940|ref|YP_005260612.1|	-	0.04	14.0	0.3	0.13	12.3	0.2	1.8	1	0	0	1	1	1	0	TOBE	domain
Asp_protease	PF09668.5	gi|379004940|ref|YP_005260612.1|	-	0.088	12.3	0.0	0.098	12.2	0.0	1.3	1	1	0	1	1	1	0	Aspartyl	protease
Acyl-CoA_dh_1	PF00441.19	gi|379004941|ref|YP_005260613.1|	-	6.2e-45	152.9	1.7	9.6e-45	152.3	1.2	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|379004941|ref|YP_005260613.1|	-	3.6e-28	98.4	0.1	6.9e-28	97.4	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379004941|ref|YP_005260613.1|	-	3.2e-20	71.3	0.1	6.5e-20	70.3	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|379004941|ref|YP_005260613.1|	-	2.5e-17	63.4	0.7	2.5e-17	63.4	0.5	1.7	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
DUF35_N	PF12172.3	gi|379004942|ref|YP_005260614.1|	-	1e-06	28.4	0.2	1.8e-06	27.7	0.1	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|379004942|ref|YP_005260614.1|	-	4.2e-06	26.9	0.5	5.9e-06	26.4	0.3	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain
Auto_anti-p27	PF06677.7	gi|379004942|ref|YP_005260614.1|	-	0.084	12.6	0.7	0.15	11.8	0.5	1.3	1	0	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-C2HC_2	PF13913.1	gi|379004942|ref|YP_005260614.1|	-	0.12	12.1	0.7	0.2	11.3	0.5	1.3	1	0	0	1	1	1	0	zinc-finger	of	a	C2HC-type
zf-ribbon_3	PF13248.1	gi|379004942|ref|YP_005260614.1|	-	0.37	10.0	3.4	0.35	10.1	0.4	1.7	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF35	PF01796.12	gi|379004943|ref|YP_005260615.1|	-	1.9e-10	40.8	0.3	2.8e-10	40.2	0.2	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|379004943|ref|YP_005260615.1|	-	2.4e-10	40.0	0.7	5.3e-10	38.9	0.5	1.6	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DZR	PF12773.2	gi|379004943|ref|YP_005260615.1|	-	0.12	12.2	0.3	0.23	11.3	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379004943|ref|YP_005260615.1|	-	0.32	10.2	4.3	0.83	8.9	2.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Thiolase_C	PF02803.13	gi|379004944|ref|YP_005260616.1|	-	1.9e-05	24.0	0.0	0.13	11.6	0.0	2.7	3	0	0	3	3	3	2	Thiolase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|379004944|ref|YP_005260616.1|	-	0.015	14.9	0.0	3.6	7.3	0.0	2.4	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Thiolase_N	PF00108.18	gi|379004944|ref|YP_005260616.1|	-	0.03	13.2	0.0	1.8	7.4	0.0	2.2	2	0	0	2	2	2	0	Thiolase,	N-terminal	domain
Peptidase_M22	PF00814.20	gi|379004944|ref|YP_005260616.1|	-	0.046	13.2	0.0	0.083	12.3	0.0	1.5	1	0	0	1	1	1	0	Glycoprotease	family
DAO	PF01266.19	gi|379004946|ref|YP_005260618.1|	-	2.6e-39	135.1	1.5	3.3e-39	134.8	1.0	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379004946|ref|YP_005260618.1|	-	2.4e-06	27.5	1.9	0.0025	17.7	0.6	2.6	1	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|379004946|ref|YP_005260618.1|	-	1.1e-05	25.3	0.1	3.2e-05	23.8	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Lycopene_cycl	PF05834.7	gi|379004946|ref|YP_005260618.1|	-	0.00024	20.1	0.5	0.049	12.5	0.0	2.1	2	0	0	2	2	2	2	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|379004946|ref|YP_005260618.1|	-	0.00026	19.5	0.1	0.016	13.7	0.0	2.2	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|379004946|ref|YP_005260618.1|	-	0.0012	17.8	1.5	0.0099	14.7	0.1	2.2	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|379004946|ref|YP_005260618.1|	-	0.0013	19.0	0.4	0.017	15.4	0.1	2.4	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379004946|ref|YP_005260618.1|	-	0.004	16.9	0.2	1.3	8.8	0.0	2.5	2	0	0	2	2	2	1	FAD-NAD(P)-binding
FAD_binding_3	PF01494.14	gi|379004946|ref|YP_005260618.1|	-	0.0064	15.5	0.0	0.013	14.5	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379004946|ref|YP_005260618.1|	-	0.0076	16.3	0.0	0.032	14.2	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Methyltransf_18	PF12847.2	gi|379004946|ref|YP_005260618.1|	-	0.015	15.8	0.0	3.6	8.2	0.0	3.3	1	1	0	1	1	1	0	Methyltransferase	domain
Nol1_Nop2_Fmu_2	PF13636.1	gi|379004946|ref|YP_005260618.1|	-	0.082	12.9	0.1	12	6.0	0.0	2.6	2	1	0	2	2	2	0	pre-rRNA	processing	and	ribosome	biogenesis
GIDA	PF01134.17	gi|379004946|ref|YP_005260618.1|	-	0.3	9.8	0.6	4.3	6.0	0.3	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
DUF35_N	PF12172.3	gi|379004947|ref|YP_005260619.1|	-	2.4e-12	46.3	3.4	4.1e-12	45.6	2.4	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|379004947|ref|YP_005260619.1|	-	1.6e-08	34.6	0.2	2.4e-08	34.0	0.2	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
zf-NADH-PPase	PF09297.6	gi|379004947|ref|YP_005260619.1|	-	0.0014	18.0	4.3	0.029	13.8	0.2	2.2	2	0	0	2	2	2	2	NADH	pyrophosphatase	zinc	ribbon	domain
DZR	PF12773.2	gi|379004947|ref|YP_005260619.1|	-	0.012	15.4	0.9	0.017	14.8	0.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379004947|ref|YP_005260619.1|	-	0.072	12.3	3.7	0.11	11.6	2.6	1.3	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-MYND	PF01753.13	gi|379004947|ref|YP_005260619.1|	-	0.11	12.4	1.0	0.15	11.9	0.7	1.2	1	0	0	1	1	1	0	MYND	finger
TF_Zn_Ribbon	PF08271.7	gi|379004947|ref|YP_005260619.1|	-	0.49	9.7	2.1	3.5	7.0	1.5	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|379004947|ref|YP_005260619.1|	-	0.72	9.8	0.0	0.72	9.8	0.0	2.6	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_RNApol_7kD	PF03604.8	gi|379004947|ref|YP_005260619.1|	-	0.88	9.1	4.1	9	5.8	0.3	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Thiolase_C	PF02803.13	gi|379004948|ref|YP_005260620.1|	-	1.1e-09	37.7	1.1	2.3e-09	36.7	0.1	2.0	2	0	0	2	2	2	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|379004948|ref|YP_005260620.1|	-	7.7e-05	21.8	1.7	7.7e-05	21.8	1.2	2.3	1	1	0	2	2	2	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|379004948|ref|YP_005260620.1|	-	0.00016	21.2	0.5	0.00016	21.2	0.4	1.8	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|379004948|ref|YP_005260620.1|	-	0.037	13.8	5.2	0.86	9.4	0.0	3.5	3	0	0	3	3	3	0	Beta-ketoacyl	synthase,	C-terminal	domain
S4	PF01479.20	gi|379004948|ref|YP_005260620.1|	-	0.11	11.8	0.0	0.32	10.4	0.0	1.7	1	0	0	1	1	1	0	S4	domain
ACP_syn_III	PF08545.5	gi|379004948|ref|YP_005260620.1|	-	0.34	10.5	4.3	0.78	9.4	0.5	2.5	2	0	0	2	2	2	0	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Acyl-CoA_dh_1	PF00441.19	gi|379004949|ref|YP_005260621.1|	-	1.9e-49	167.6	1.4	3.3e-49	166.8	0.9	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|379004949|ref|YP_005260621.1|	-	3e-23	82.5	0.0	7.9e-23	81.1	0.0	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379004949|ref|YP_005260621.1|	-	4.4e-22	77.3	0.1	8.5e-22	76.4	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|379004949|ref|YP_005260621.1|	-	3.8e-19	69.2	0.2	6.9e-19	68.4	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB	PF03241.8	gi|379004949|ref|YP_005260621.1|	-	0.037	12.8	0.0	0.084	11.7	0.0	1.5	1	0	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
FAD_binding_5	PF00941.16	gi|379004951|ref|YP_005260623.1|	-	2e-39	134.7	0.0	3.8e-39	133.8	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
Fer2_2	PF01799.15	gi|379004951|ref|YP_005260623.1|	-	7.5e-24	83.4	0.1	1.9e-23	82.1	0.0	1.7	1	0	0	1	1	1	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|379004951|ref|YP_005260623.1|	-	7.3e-06	25.6	0.2	7.3e-06	25.6	0.1	1.7	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|379004951|ref|YP_005260623.1|	-	0.0034	17.1	0.0	0.01	15.6	0.0	1.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
CO_deh_flav_C	PF03450.12	gi|379004951|ref|YP_005260623.1|	-	0.012	15.5	0.0	0.03	14.2	0.0	1.8	1	0	0	1	1	1	0	CO	dehydrogenase	flavoprotein	C-terminal	domain
HA	PF03457.9	gi|379004951|ref|YP_005260623.1|	-	0.083	13.0	0.0	0.19	11.8	0.0	1.5	1	0	0	1	1	1	0	Helicase	associated	domain
Ald_Xan_dh_C2	PF02738.13	gi|379004952|ref|YP_005260624.1|	-	8.5e-97	324.7	0.0	1.3e-96	324.0	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|379004952|ref|YP_005260624.1|	-	3.6e-15	55.9	0.0	8.6e-15	54.7	0.0	1.7	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
ECH	PF00378.15	gi|379004953|ref|YP_005260625.1|	-	7.8e-52	175.8	0.0	8.9e-52	175.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Aldedh	PF00171.17	gi|379004954|ref|YP_005260626.1|	-	3.6e-162	539.9	0.0	4.1e-162	539.7	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
AMP-binding	PF00501.23	gi|379004955|ref|YP_005260627.1|	-	7.9e-78	261.6	0.0	1.1e-77	261.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379004955|ref|YP_005260627.1|	-	1.4e-19	70.8	0.6	3.9e-19	69.3	0.4	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Autotrns_rpt	PF12951.2	gi|379004955|ref|YP_005260627.1|	-	0.29	10.8	1.0	0.66	9.7	0.7	1.6	1	0	0	1	1	1	0	Autotransporter-associated	beta	strand	repeat
AMP-binding	PF00501.23	gi|379004956|ref|YP_005260628.1|	-	0.055	11.8	0.0	0.056	11.8	0.0	1.1	1	0	0	1	1	1	0	AMP-binding	enzyme
AMP-binding	PF00501.23	gi|379004957|ref|YP_005260629.1|	-	1.3e-31	109.4	0.0	1.4e-31	109.2	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379004958|ref|YP_005260630.1|	-	9.7e-11	42.4	0.6	1.1e-10	42.3	0.4	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Chorion_3	PF05387.6	gi|379004958|ref|YP_005260630.1|	-	0.0038	16.7	0.9	0.0041	16.6	0.6	1.0	1	0	0	1	1	1	1	Chorion	family	3
CTP_transf_2	PF01467.21	gi|379004959|ref|YP_005260631.1|	-	2.2e-13	50.5	0.0	3e-13	50.0	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
Asp_decarbox	PF02261.11	gi|379004960|ref|YP_005260632.1|	-	1.5e-32	111.5	0.0	1.7e-32	111.4	0.0	1.0	1	0	0	1	1	1	1	Aspartate	decarboxylase
tRNA-synt_2d	PF01409.15	gi|379004962|ref|YP_005260634.1|	-	5.9e-79	264.7	0.0	7.5e-79	264.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2	PF00152.15	gi|379004962|ref|YP_005260634.1|	-	9.1e-09	34.5	0.5	0.0011	17.8	0.0	3.2	3	0	0	3	3	3	3	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA-synt_2b	PF00587.20	gi|379004962|ref|YP_005260634.1|	-	0.0026	17.3	0.0	0.017	14.7	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
RHH_1	PF01402.16	gi|379004963|ref|YP_005260635.1|	-	2.8e-11	42.7	0.1	4.5e-11	42.1	0.1	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF1512	PF07431.7	gi|379004965|ref|YP_005260637.1|	-	5.8e-150	498.9	0.8	6.6e-150	498.7	0.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
MFS_1	PF07690.11	gi|379004966|ref|YP_005260638.1|	-	6.9e-28	97.3	51.0	7.6e-27	93.9	27.6	1.6	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF4519	PF15012.1	gi|379004966|ref|YP_005260638.1|	-	7.5	6.5	5.6	6.1	6.8	0.4	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4519)
Pyridoxal_deC	PF00282.14	gi|379004967|ref|YP_005260639.1|	-	4.6e-27	94.4	0.0	6.5e-27	93.9	0.0	1.2	1	0	0	1	1	1	1	Pyridoxal-dependent	decarboxylase	conserved	domain
Aminotran_5	PF00266.14	gi|379004967|ref|YP_005260639.1|	-	2.1e-14	53.0	0.0	6.5e-14	51.4	0.0	1.8	1	1	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|379004967|ref|YP_005260639.1|	-	8.4e-07	28.3	0.0	2.9e-06	26.5	0.0	1.7	2	0	0	2	2	2	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
SLA_LP_auto_ag	PF05889.8	gi|379004967|ref|YP_005260639.1|	-	1.6e-05	23.5	0.0	4.3e-05	22.1	0.0	1.7	2	0	0	2	2	2	1	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
Beta_elim_lyase	PF01212.16	gi|379004967|ref|YP_005260639.1|	-	0.021	13.9	0.0	0.027	13.6	0.0	1.3	1	0	0	1	1	1	0	Beta-eliminating	lyase
Cys_Met_Meta_PP	PF01053.15	gi|379004967|ref|YP_005260639.1|	-	0.037	12.3	0.0	0.06	11.6	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
ADH_N	PF08240.7	gi|379004968|ref|YP_005260640.1|	-	2.6e-33	114.0	0.6	4.4e-33	113.3	0.4	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|379004968|ref|YP_005260640.1|	-	1e-26	92.9	0.6	2e-26	92.0	0.4	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|379004968|ref|YP_005260640.1|	-	1.1e-07	32.7	0.1	2.4e-07	31.7	0.0	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|379004968|ref|YP_005260640.1|	-	4.9e-05	22.9	1.5	8.3e-05	22.2	1.1	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
XdhC_C	PF13478.1	gi|379004968|ref|YP_005260640.1|	-	0.0033	17.7	0.1	0.0053	17.0	0.1	1.3	1	0	0	1	1	1	1	XdhC	Rossmann	domain
3HCDH_N	PF02737.13	gi|379004968|ref|YP_005260640.1|	-	0.015	14.9	0.5	0.022	14.4	0.4	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TrkA_N	PF02254.13	gi|379004968|ref|YP_005260640.1|	-	0.02	14.8	1.4	0.022	14.7	0.2	1.7	2	0	0	2	2	2	0	TrkA-N	domain
Peptidase_C25_C	PF03785.9	gi|379004968|ref|YP_005260640.1|	-	0.04	13.7	0.7	0.074	12.8	0.5	1.4	1	0	0	1	1	1	0	Peptidase	family	C25,	C	terminal	ig-like	domain
SCP2	PF02036.12	gi|379004969|ref|YP_005260641.1|	-	1.9e-07	31.3	0.0	2.4e-07	30.9	0.0	1.2	1	0	0	1	1	1	1	SCP-2	sterol	transfer	family
DAO	PF01266.19	gi|379004970|ref|YP_005260642.1|	-	7e-46	156.7	0.1	8.8e-46	156.4	0.1	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|379004970|ref|YP_005260642.1|	-	1.5e-07	30.8	0.1	0.00035	19.7	0.2	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379004970|ref|YP_005260642.1|	-	3.8e-06	27.0	0.1	0.0039	17.2	0.1	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379004970|ref|YP_005260642.1|	-	2.7e-05	24.4	0.4	0.4	11.1	0.4	2.9	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004970|ref|YP_005260642.1|	-	7.9e-05	21.6	0.1	0.0023	16.8	0.0	2.2	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|379004970|ref|YP_005260642.1|	-	0.00014	21.8	0.4	0.00082	19.3	0.1	2.3	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Fer2_BFD	PF04324.10	gi|379004970|ref|YP_005260642.1|	-	0.00041	20.3	2.7	0.00041	20.3	1.9	1.8	2	0	0	2	2	1	1	BFD-like	[2Fe-2S]	binding	domain
Thi4	PF01946.12	gi|379004970|ref|YP_005260642.1|	-	0.00044	19.4	0.2	0.00096	18.3	0.1	1.6	1	0	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.7	gi|379004970|ref|YP_005260642.1|	-	0.0024	16.8	0.1	0.27	10.0	0.0	2.2	2	0	0	2	2	2	1	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|379004970|ref|YP_005260642.1|	-	0.0031	16.0	0.0	0.075	11.4	0.0	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|379004970|ref|YP_005260642.1|	-	0.006	16.4	0.3	0.018	14.9	0.2	1.7	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Saccharop_dh	PF03435.13	gi|379004970|ref|YP_005260642.1|	-	0.053	12.4	0.1	0.076	11.9	0.1	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
3HCDH_N	PF02737.13	gi|379004970|ref|YP_005260642.1|	-	0.058	13.0	0.2	0.096	12.3	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|379004971|ref|YP_005260643.1|	-	1.6e-09	37.6	0.1	4.1e-09	36.3	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379004971|ref|YP_005260643.1|	-	9.4e-08	32.3	0.0	3.7e-06	27.1	0.1	2.2	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379004971|ref|YP_005260643.1|	-	1.4e-05	25.0	0.1	0.00095	19.0	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379004971|ref|YP_005260643.1|	-	2.6e-05	23.3	5.1	0.00057	18.8	0.1	2.6	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|379004971|ref|YP_005260643.1|	-	3.4e-05	22.8	0.0	5.4e-05	22.2	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|379004971|ref|YP_005260643.1|	-	4.1e-05	23.9	0.2	0.00012	22.4	0.1	1.8	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|379004971|ref|YP_005260643.1|	-	7.3e-05	21.9	0.2	0.00016	20.8	0.1	1.6	2	0	0	2	2	2	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|379004971|ref|YP_005260643.1|	-	0.00012	20.6	0.0	0.00018	20.1	0.0	1.2	1	0	0	1	1	1	1	HI0933-like	protein
TrkA_N	PF02254.13	gi|379004971|ref|YP_005260643.1|	-	0.0006	19.8	0.1	0.039	13.9	0.0	2.9	3	1	0	3	3	3	1	TrkA-N	domain
Thi4	PF01946.12	gi|379004971|ref|YP_005260643.1|	-	0.0015	17.6	0.7	0.0085	15.2	0.0	2.4	3	0	0	3	3	3	1	Thi4	family
Amino_oxidase	PF01593.19	gi|379004971|ref|YP_005260643.1|	-	0.0025	16.9	0.1	0.0025	16.9	0.1	1.5	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379004971|ref|YP_005260643.1|	-	0.0068	15.3	0.0	0.018	13.9	0.0	1.6	2	0	0	2	2	2	1	Lycopene	cyclase	protein
ApbA	PF02558.11	gi|379004971|ref|YP_005260643.1|	-	0.017	14.5	0.3	0.038	13.4	0.1	1.6	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
NAD_binding_9	PF13454.1	gi|379004971|ref|YP_005260643.1|	-	0.027	14.2	0.3	0.053	13.3	0.2	1.4	1	0	0	1	1	1	0	FAD-NAD(P)-binding
NAD_binding_10	PF13460.1	gi|379004971|ref|YP_005260643.1|	-	0.04	13.9	0.1	0.071	13.1	0.0	1.4	1	0	0	1	1	1	0	NADH(P)-binding
Glyco_trans_4_4	PF13579.1	gi|379004971|ref|YP_005260643.1|	-	0.066	13.3	0.4	1.8	8.6	0.1	2.4	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379004971|ref|YP_005260643.1|	-	0.072	12.8	0.1	2	8.1	0.0	2.2	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FGGY_C	PF02782.11	gi|379004972|ref|YP_005260644.1|	-	7.5e-20	71.3	0.1	1.1e-19	70.8	0.0	1.2	1	0	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	C-terminal	domain
FGGY_N	PF00370.16	gi|379004972|ref|YP_005260644.1|	-	7.5e-08	31.9	0.0	3.4e-07	29.8	0.0	2.0	1	1	0	1	1	1	1	FGGY	family	of	carbohydrate	kinases,	N-terminal	domain
FAD_binding_4	PF01565.18	gi|379004973|ref|YP_005260645.1|	-	8.3e-39	132.2	1.4	1.3e-38	131.5	1.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.14	gi|379004973|ref|YP_005260645.1|	-	1.4e-32	112.9	0.0	2.7e-32	112.0	0.0	1.5	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_5	PF00941.16	gi|379004973|ref|YP_005260645.1|	-	0.033	13.6	0.1	0.076	12.4	0.0	1.6	2	0	0	2	2	2	0	FAD	binding	domain	in	molybdopterin	dehydrogenase
DUF650	PF04894.7	gi|379004974|ref|YP_005260646.1|	-	3.1e-101	338.4	0.0	4.3e-101	337.9	0.0	1.2	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|379004974|ref|YP_005260646.1|	-	1.5e-37	127.5	0.5	8.3e-37	125.1	0.1	2.0	2	0	0	2	2	2	1	Archaeal	protein	of	unknown	function	(DUF651)
DUF2452	PF10504.4	gi|379004974|ref|YP_005260646.1|	-	0.16	11.2	0.2	1	8.5	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2452)
Antitoxin-MazE	PF04014.13	gi|379004975|ref|YP_005260647.1|	-	4.6e-10	38.9	0.3	7.1e-10	38.4	0.2	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF1905	PF08922.6	gi|379004975|ref|YP_005260647.1|	-	0.026	14.0	0.1	0.047	13.2	0.1	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
eIF-1a	PF01176.14	gi|379004975|ref|YP_005260647.1|	-	0.046	13.1	0.7	0.07	12.5	0.5	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
RNA_pol_Rpb5_C	PF01191.14	gi|379004975|ref|YP_005260647.1|	-	0.15	11.6	2.4	4.3	7.0	0.1	2.9	1	1	2	3	3	3	0	RNA	polymerase	Rpb5,	C-terminal	domain
PIN	PF01850.16	gi|379004976|ref|YP_005260648.1|	-	8.9e-18	64.7	0.3	2.1e-17	63.6	0.2	1.6	1	1	0	1	1	1	1	PIN	domain
PIN_2	PF10130.4	gi|379004976|ref|YP_005260648.1|	-	0.032	14.2	0.0	0.07	13.1	0.0	1.7	1	1	0	1	1	1	0	PIN	domain
LysE	PF01810.13	gi|379004977|ref|YP_005260649.1|	-	5e-25	87.9	11.5	5.9e-25	87.6	8.0	1.1	1	0	0	1	1	1	1	LysE	type	translocator
UPF0093	PF03653.8	gi|379004977|ref|YP_005260649.1|	-	0.39	10.6	4.0	0.22	11.4	1.2	1.7	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0093)
DUF1469	PF07332.6	gi|379004977|ref|YP_005260649.1|	-	5	6.8	13.2	4	7.1	0.5	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
DUF981	PF06168.6	gi|379004978|ref|YP_005260650.1|	-	7.8e-51	172.5	19.1	9.8e-51	172.2	13.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
DUF350	PF03994.9	gi|379004978|ref|YP_005260650.1|	-	0.0055	16.4	1.0	0.0055	16.4	0.7	3.9	4	0	0	4	4	4	1	Domain	of	Unknown	Function	(DUF350)
DUF2232	PF09991.4	gi|379004978|ref|YP_005260650.1|	-	1.5	7.7	19.0	0.19	10.6	9.4	2.0	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2232)
Bax1-I	PF01027.15	gi|379004978|ref|YP_005260650.1|	-	4.8	6.7	25.9	12	5.4	17.8	1.7	1	1	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
Molydop_binding	PF01568.16	gi|379004979|ref|YP_005260651.1|	-	1.8e-13	50.2	0.0	3.7e-13	49.2	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdopterin	PF00384.17	gi|379004979|ref|YP_005260651.1|	-	2.9e-13	49.3	0.0	6.2e-09	35.0	0.0	2.9	2	1	0	2	2	2	2	Molybdopterin	oxidoreductase
Molybdop_Fe4S4	PF04879.11	gi|379004979|ref|YP_005260651.1|	-	2.2e-05	24.1	2.4	0.00013	21.6	1.7	2.2	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Prp19	PF08606.6	gi|379004980|ref|YP_005260652.1|	-	0.032	13.9	0.0	7.1	6.4	0.1	2.3	2	0	0	2	2	2	0	Prp19/Pso4-like
DUF3317	PF11779.3	gi|379004980|ref|YP_005260652.1|	-	7.9	6.0	9.5	7.8	6.0	0.0	4.4	4	2	1	5	5	5	0	Protein	of	unknown	function	(DUF3317)
Fer4_11	PF13247.1	gi|379004981|ref|YP_005260653.1|	-	1.2e-32	111.7	8.3	1.2e-32	111.7	5.8	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379004981|ref|YP_005260653.1|	-	1.1e-17	64.0	29.2	4.1e-10	39.8	6.8	2.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379004981|ref|YP_005260653.1|	-	3.9e-14	51.7	35.8	9.3e-07	28.4	0.9	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|379004981|ref|YP_005260653.1|	-	8.5e-13	48.3	29.1	2.7e-09	37.1	7.1	2.5	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379004981|ref|YP_005260653.1|	-	1.4e-12	46.6	41.1	4.9e-09	35.4	1.9	5.9	5	1	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|379004981|ref|YP_005260653.1|	-	1.8e-11	43.6	29.5	5e-08	32.6	6.0	3.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379004981|ref|YP_005260653.1|	-	2.6e-10	39.6	11.4	5.7e-06	25.9	1.4	4.7	4	1	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379004981|ref|YP_005260653.1|	-	3.6e-09	36.4	46.7	0.00056	20.2	5.0	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379004981|ref|YP_005260653.1|	-	8.4e-07	29.2	18.3	0.098	13.0	3.1	4.3	3	1	1	4	4	4	3	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379004981|ref|YP_005260653.1|	-	1.8e-06	28.6	21.2	0.24	12.1	0.2	4.3	4	0	0	4	4	4	3	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|379004981|ref|YP_005260653.1|	-	2e-05	24.4	27.6	0.0093	15.9	6.9	3.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379004981|ref|YP_005260653.1|	-	0.00057	20.2	9.0	0.0057	17.0	2.4	4.3	3	1	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379004981|ref|YP_005260653.1|	-	0.00073	19.6	2.4	0.00073	19.6	1.6	4.4	4	1	0	4	4	4	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379004981|ref|YP_005260653.1|	-	0.0017	18.2	29.2	0.2	11.5	6.7	3.5	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379004981|ref|YP_005260653.1|	-	0.0019	18.7	0.9	0.0019	18.7	0.6	4.1	4	0	0	4	4	4	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379004981|ref|YP_005260653.1|	-	0.068	13.5	2.9	0.068	13.5	2.0	3.9	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain
Nitrate_red_del	PF02613.10	gi|379004983|ref|YP_005260655.1|	-	2.5e-06	27.3	0.1	3.8e-06	26.7	0.1	1.3	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
TSNR_N	PF04705.7	gi|379004983|ref|YP_005260655.1|	-	0.03	14.1	0.0	0.31	10.8	0.0	2.1	2	0	0	2	2	2	0	Thiostrepton-resistance	methylase,	N	terminus
DUF1128	PF06569.6	gi|379004983|ref|YP_005260655.1|	-	0.055	13.2	0.0	0.11	12.2	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1128)
Sec23_helical	PF04815.10	gi|379004983|ref|YP_005260655.1|	-	0.079	12.4	0.1	0.36	10.2	0.0	1.9	1	1	0	1	1	1	0	Sec23/Sec24	helical	domain
Arch_ATPase	PF01637.13	gi|379004984|ref|YP_005260656.1|	-	3.2e-33	115.3	0.0	4.9e-33	114.7	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_14	PF13173.1	gi|379004984|ref|YP_005260656.1|	-	7.8e-10	38.7	0.0	2.3e-07	30.7	0.0	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379004984|ref|YP_005260656.1|	-	2.8e-07	30.7	0.0	1e-06	28.9	0.0	1.9	3	0	0	3	3	3	1	AAA	domain
AAA_16	PF13191.1	gi|379004984|ref|YP_005260656.1|	-	2.4e-06	27.6	0.1	1.3e-05	25.2	0.0	2.2	3	1	0	3	3	3	1	AAA	ATPase	domain
Zot	PF05707.7	gi|379004984|ref|YP_005260656.1|	-	0.097	12.1	0.1	0.44	9.9	0.1	2.0	1	1	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
Radical_SAM	PF04055.16	gi|379004985|ref|YP_005260657.1|	-	1e-13	51.7	0.0	1.8e-13	51.0	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379004985|ref|YP_005260657.1|	-	8.4e-07	29.0	0.0	1.4e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379004985|ref|YP_005260657.1|	-	9.8e-07	28.9	0.0	1.7e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Peptidase_S9	PF00326.16	gi|379004986|ref|YP_005260658.1|	-	1.3e-41	142.2	0.0	1.7e-41	141.7	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|379004986|ref|YP_005260658.1|	-	9.6e-16	57.8	0.1	1.9e-15	56.8	0.1	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|379004986|ref|YP_005260658.1|	-	2.3e-15	57.1	4.8	8.8e-15	55.1	3.4	1.9	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S15	PF02129.13	gi|379004986|ref|YP_005260658.1|	-	1.6e-10	40.9	0.1	2.7e-05	23.7	0.1	2.6	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
PD40	PF07676.7	gi|379004986|ref|YP_005260658.1|	-	9.1e-08	31.6	0.3	5.8e-06	25.8	0.1	3.0	2	0	0	2	2	2	1	WD40-like	Beta	Propeller	Repeat
Hydrolase_4	PF12146.3	gi|379004986|ref|YP_005260658.1|	-	1.4e-06	28.0	0.0	5e-06	26.2	0.0	2.0	2	0	0	2	2	2	1	Putative	lysophospholipase
Esterase_phd	PF10503.4	gi|379004986|ref|YP_005260658.1|	-	0.0022	17.2	0.4	0.012	14.8	0.3	2.0	1	1	0	1	1	1	1	Esterase	PHB	depolymerase
Abhydrolase_1	PF00561.15	gi|379004986|ref|YP_005260658.1|	-	0.013	15.1	0.1	0.12	11.9	0.0	2.0	1	1	0	2	2	2	0	alpha/beta	hydrolase	fold
Abhydrolase_3	PF07859.8	gi|379004986|ref|YP_005260658.1|	-	0.017	14.6	1.1	0.16	11.5	0.7	2.4	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
Abhydrolase_2	PF02230.11	gi|379004986|ref|YP_005260658.1|	-	0.024	14.0	0.0	2	7.7	0.0	2.7	3	0	0	3	3	3	0	Phospholipase/Carboxylesterase
Esterase	PF00756.15	gi|379004986|ref|YP_005260658.1|	-	0.028	13.8	0.0	0.14	11.5	0.0	2.0	1	1	0	1	1	1	0	Putative	esterase
DLH	PF01738.13	gi|379004986|ref|YP_005260658.1|	-	0.1	11.8	1.2	0.13	11.5	0.0	1.7	2	0	0	2	2	1	0	Dienelactone	hydrolase	family
DUF2920	PF11144.3	gi|379004986|ref|YP_005260658.1|	-	0.11	11.4	0.0	3.2	6.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2920)
Abhydrolase_4	PF08386.5	gi|379004986|ref|YP_005260658.1|	-	0.16	11.8	0.0	0.43	10.5	0.0	1.6	2	0	0	2	2	2	0	TAP-like	protein
DPPIV_N	PF00930.16	gi|379004986|ref|YP_005260658.1|	-	0.16	10.4	0.0	0.3	9.6	0.0	1.5	1	0	0	1	1	1	0	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
COesterase	PF00135.23	gi|379004986|ref|YP_005260658.1|	-	0.18	10.4	0.0	0.26	9.9	0.0	1.1	1	0	0	1	1	1	0	Carboxylesterase	family
Glycos_transf_1	PF00534.15	gi|379004987|ref|YP_005260659.1|	-	9.5e-16	57.6	0.0	2.4e-15	56.3	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004987|ref|YP_005260659.1|	-	4.9e-13	49.4	0.3	1.6e-12	47.7	0.2	1.9	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004987|ref|YP_005260659.1|	-	0.00065	19.9	0.0	0.0013	19.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|379004987|ref|YP_005260659.1|	-	0.0007	19.3	0.0	0.0017	18.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glycos_transf_2	PF00535.21	gi|379004988|ref|YP_005260660.1|	-	1.7e-11	44.1	0.1	2.4e-11	43.6	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.4	gi|379004988|ref|YP_005260660.1|	-	9.4e-10	38.0	0.0	1.3e-09	37.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_tranf_2_3	PF13641.1	gi|379004988|ref|YP_005260660.1|	-	7.7e-09	35.6	0.2	3.7e-08	33.4	0.2	1.9	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|379004988|ref|YP_005260660.1|	-	1.4e-06	28.1	0.0	2.2e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|379004988|ref|YP_005260660.1|	-	2.3e-05	23.7	0.0	8.8e-05	21.8	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferase	family	21
Anp1	PF03452.9	gi|379004988|ref|YP_005260660.1|	-	0.054	12.6	0.0	0.077	12.1	0.0	1.2	1	0	0	1	1	1	0	Anp1
Glycos_transf_1	PF00534.15	gi|379004989|ref|YP_005260661.1|	-	9.4e-11	41.4	1.8	1.4e-10	40.9	0.0	2.1	3	0	0	3	3	3	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004989|ref|YP_005260661.1|	-	6.6e-10	39.1	0.1	1.1e-09	38.4	0.1	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
DUF3880	PF12996.2	gi|379004989|ref|YP_005260661.1|	-	0.0026	17.6	0.0	0.0056	16.5	0.0	1.5	1	0	0	1	1	1	1	DUF	based	on	E.	rectale	Gene	description	(DUF3880)
Glycos_transf_1	PF00534.15	gi|379004990|ref|YP_005260662.1|	-	3.1e-17	62.5	0.0	4.6e-17	61.9	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004990|ref|YP_005260662.1|	-	3.2e-12	46.7	0.0	7e-12	45.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004990|ref|YP_005260662.1|	-	6.7e-06	26.2	0.0	1.3e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glycos_transf_1	PF00534.15	gi|379004991|ref|YP_005260663.1|	-	2.9e-11	43.0	0.0	4.3e-08	32.7	0.0	2.2	2	0	0	2	2	2	2	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379004991|ref|YP_005260663.1|	-	1e-09	38.6	0.0	1.4e-08	34.9	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379004991|ref|YP_005260663.1|	-	1.8e-07	31.2	0.0	3.6e-07	30.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|379004991|ref|YP_005260663.1|	-	0.091	12.9	1.4	0.23	11.5	0.1	2.1	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Amino_oxidase	PF01593.19	gi|379004992|ref|YP_005260664.1|	-	1.1e-11	44.4	0.0	3.2e-11	42.9	0.0	1.7	1	1	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|379004992|ref|YP_005260664.1|	-	0.00034	20.5	0.5	0.00094	19.1	0.2	1.9	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|379004992|ref|YP_005260664.1|	-	0.0011	17.9	0.4	0.61	8.9	0.0	2.5	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379004992|ref|YP_005260664.1|	-	0.008	16.0	0.2	0.018	14.9	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Arch_ATPase	PF01637.13	gi|379004996|ref|YP_005260668.1|	-	7.1e-63	212.4	0.0	9.9e-63	211.9	0.0	1.2	1	0	0	1	1	1	1	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|379004996|ref|YP_005260668.1|	-	0.0001	21.4	0.0	0.00024	20.2	0.0	1.7	2	1	0	2	2	2	1	Zeta	toxin
AAA_33	PF13671.1	gi|379004996|ref|YP_005260668.1|	-	0.0068	16.2	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379004996|ref|YP_005260668.1|	-	0.0073	15.7	0.0	0.014	14.8	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
AAA_16	PF13191.1	gi|379004996|ref|YP_005260668.1|	-	0.043	13.8	0.0	0.083	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_14	PF13173.1	gi|379004996|ref|YP_005260668.1|	-	0.11	12.3	0.0	0.81	9.5	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|379004996|ref|YP_005260668.1|	-	0.12	12.5	0.0	0.4	10.8	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DAP3	PF10236.4	gi|379004996|ref|YP_005260668.1|	-	0.12	11.2	0.0	0.22	10.4	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_22	PF13401.1	gi|379004996|ref|YP_005260668.1|	-	0.13	12.4	0.0	0.24	11.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379004996|ref|YP_005260668.1|	-	0.19	11.8	0.0	0.39	10.8	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
PaREP1	PF05942.6	gi|379004997|ref|YP_005260669.1|	-	7.4e-35	119.2	5.1	7.7e-35	119.2	1.5	2.0	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
Arch_ATPase	PF01637.13	gi|379005000|ref|YP_005260672.1|	-	3.4e-62	210.2	0.0	4.2e-62	209.9	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|379005000|ref|YP_005260672.1|	-	0.00018	20.6	0.0	0.00038	19.6	0.0	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_22	PF13401.1	gi|379005000|ref|YP_005260672.1|	-	0.0076	16.3	0.0	0.012	15.6	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379005000|ref|YP_005260672.1|	-	0.01	15.7	0.1	0.027	14.4	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
MgsA_C	PF12002.3	gi|379005000|ref|YP_005260672.1|	-	0.037	13.7	0.0	0.071	12.7	0.0	1.4	1	0	0	1	1	1	0	MgsA	AAA+	ATPase	C	terminal
AAA_33	PF13671.1	gi|379005000|ref|YP_005260672.1|	-	0.046	13.6	0.0	0.08	12.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379005000|ref|YP_005260672.1|	-	0.055	13.6	0.0	0.12	12.5	0.0	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|379005000|ref|YP_005260672.1|	-	0.069	12.5	0.0	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	AAA-like	domain
NACHT	PF05729.7	gi|379005000|ref|YP_005260672.1|	-	0.069	12.8	0.0	0.36	10.4	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_14	PF13173.1	gi|379005000|ref|YP_005260672.1|	-	0.1	12.5	0.0	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379005000|ref|YP_005260672.1|	-	0.15	12.2	0.0	0.25	11.5	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
Polysacc_synt_3	PF13440.1	gi|379005001|ref|YP_005260673.1|	-	0.00012	21.6	29.4	0.00012	21.6	20.4	3.1	1	1	2	3	3	3	3	Polysaccharide	biosynthesis	protein
Porin_O_P	PF07396.6	gi|379005001|ref|YP_005260673.1|	-	0.12	11.2	0.0	0.17	10.6	0.0	1.1	1	0	0	1	1	1	0	Phosphate-selective	porin	O	and	P
DUF1616	PF07760.6	gi|379005002|ref|YP_005260674.1|	-	1.7e-30	106.1	8.1	2.2e-30	105.7	5.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
DUF4395	PF14340.1	gi|379005002|ref|YP_005260674.1|	-	0.07	13.2	10.5	0.33	11.0	7.2	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4395)
DUF4231	PF14015.1	gi|379005002|ref|YP_005260674.1|	-	0.18	11.8	9.2	0.15	12.0	0.3	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
7TMR-DISM_7TM	PF07695.6	gi|379005002|ref|YP_005260674.1|	-	1.8	8.2	10.8	16	5.1	7.6	1.9	1	1	0	1	1	1	0	7TM	diverse	intracellular	signalling
DUF1616	PF07760.6	gi|379005003|ref|YP_005260675.1|	-	4.4e-33	114.6	0.0	6.3e-33	114.1	0.0	1.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
ETRAMP	PF09716.5	gi|379005003|ref|YP_005260675.1|	-	0.2	11.6	4.6	0.25	11.3	0.0	2.2	2	0	0	2	2	2	0	Malarial	early	transcribed	membrane	protein	(ETRAMP)
DUF3040	PF11239.3	gi|379005003|ref|YP_005260675.1|	-	0.33	11.0	3.4	7.9	6.6	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3040)
RskA	PF10099.4	gi|379005003|ref|YP_005260675.1|	-	0.37	10.5	8.9	1.8	8.2	0.1	2.7	3	0	0	3	3	3	0	Anti-sigma-K	factor	rskA
Epimerase	PF01370.16	gi|379005004|ref|YP_005260676.1|	-	3.8e-54	183.6	0.0	4.9e-54	183.2	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|379005004|ref|YP_005260676.1|	-	4.5e-28	97.9	0.0	5.8e-28	97.5	0.0	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_10	PF13460.1	gi|379005004|ref|YP_005260676.1|	-	2.7e-12	47.0	0.0	3.7e-12	46.6	0.0	1.2	1	0	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|379005004|ref|YP_005260676.1|	-	1.1e-11	44.2	1.4	7.8e-09	34.8	0.1	2.8	2	1	0	2	2	2	2	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|379005004|ref|YP_005260676.1|	-	4.1e-10	38.8	0.0	5.6e-10	38.3	0.0	1.1	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|379005004|ref|YP_005260676.1|	-	3.5e-09	35.9	0.1	1.3e-06	27.5	0.0	2.1	1	1	1	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|379005004|ref|YP_005260676.1|	-	1e-06	28.8	1.8	1.6e-05	24.8	0.4	2.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
NmrA	PF05368.8	gi|379005004|ref|YP_005260676.1|	-	1.1e-06	28.1	0.1	2.7e-06	26.8	0.0	1.7	2	0	0	2	2	2	1	NmrA-like	family
Epimerase_Csub	PF13950.1	gi|379005004|ref|YP_005260676.1|	-	6.8e-05	22.7	0.0	0.00014	21.7	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose	4-epimerase	C-term	subunit
DAO	PF01266.19	gi|379005004|ref|YP_005260676.1|	-	0.00033	19.6	0.6	0.00055	18.9	0.4	1.3	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|379005004|ref|YP_005260676.1|	-	0.00045	19.6	0.0	0.00086	18.7	0.0	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.13	gi|379005004|ref|YP_005260676.1|	-	0.001	19.0	0.1	0.0024	17.8	0.1	1.6	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_8	PF13450.1	gi|379005004|ref|YP_005260676.1|	-	0.0018	18.2	0.3	0.0042	17.0	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|379005004|ref|YP_005260676.1|	-	0.0092	15.6	0.1	0.015	14.9	0.1	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
KR	PF08659.5	gi|379005004|ref|YP_005260676.1|	-	0.017	14.8	0.6	0.074	12.7	0.2	2.2	1	1	1	2	2	2	0	KR	domain
Ldh_1_N	PF00056.18	gi|379005004|ref|YP_005260676.1|	-	0.027	14.2	0.1	0.052	13.3	0.1	1.5	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
UPF0146	PF03686.8	gi|379005004|ref|YP_005260676.1|	-	0.052	13.3	0.9	0.27	11.0	0.1	2.3	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0146)
Pyr_redox	PF00070.22	gi|379005004|ref|YP_005260676.1|	-	0.081	13.3	0.4	0.17	12.3	0.3	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.10	gi|379005004|ref|YP_005260676.1|	-	0.085	12.6	0.1	0.16	11.8	0.0	1.5	2	0	0	2	2	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ApbA	PF02558.11	gi|379005004|ref|YP_005260676.1|	-	0.11	11.9	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
XdhC_C	PF13478.1	gi|379005004|ref|YP_005260676.1|	-	0.13	12.6	0.3	0.85	9.9	0.0	2.2	2	0	0	2	2	2	0	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.14	gi|379005004|ref|YP_005260676.1|	-	0.15	11.1	0.2	0.29	10.2	0.0	1.6	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Glycos_transf_2	PF00535.21	gi|379005005|ref|YP_005260677.1|	-	5.3e-20	71.7	0.0	7.2e-20	71.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|379005005|ref|YP_005260677.1|	-	1.5e-08	34.7	0.0	1.9e-08	34.3	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
PaREP1	PF05942.6	gi|379005006|ref|YP_005260678.1|	-	1.5e-06	28.0	0.1	1.8e-06	27.8	0.0	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
TOMM6	PF15184.1	gi|379005007|ref|YP_005260679.1|	-	0.064	12.5	0.3	0.064	12.5	0.2	1.1	1	0	0	1	1	1	0	Mitochondrial	import	receptor	subunit	TOM6	homolog
PsbX	PF06596.6	gi|379005007|ref|YP_005260679.1|	-	0.093	12.4	2.0	0.12	12.0	1.4	1.1	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	X	protein	(PsbX)
VCBS	PF13517.1	gi|379005009|ref|YP_005260681.1|	-	0.0052	17.1	0.9	1.6	9.1	0.1	2.2	1	1	1	2	2	2	2	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
Peptidase_S8	PF00082.17	gi|379005013|ref|YP_005260685.1|	-	4.4e-27	94.9	0.1	1e-26	93.7	0.1	1.7	1	0	0	1	1	1	1	Subtilase	family
PS_pyruv_trans	PF04230.8	gi|379005014|ref|YP_005260686.1|	-	1.4e-08	34.8	0.1	2.8e-07	30.5	0.1	2.1	1	1	0	1	1	1	1	Polysaccharide	pyruvyl	transferase
PS_pyruv_trans	PF04230.8	gi|379005015|ref|YP_005260687.1|	-	0.00021	21.0	0.0	0.00034	20.4	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	pyruvyl	transferase
Cellulose_synt	PF03552.9	gi|379005016|ref|YP_005260688.1|	-	0.091	11.0	7.9	0.13	10.4	5.5	1.2	1	0	0	1	1	1	0	Cellulose	synthase
DUF202	PF02656.10	gi|379005016|ref|YP_005260688.1|	-	6.5	7.0	19.7	0.093	12.9	1.6	4.0	2	2	2	4	4	4	0	Domain	of	unknown	function	(DUF202)
Glycos_transf_2	PF00535.21	gi|379005018|ref|YP_005260690.1|	-	6.2e-05	22.7	0.1	8.8e-05	22.2	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	transferase	family	2
PP2C_2	PF13672.1	gi|379005018|ref|YP_005260690.1|	-	0.06	12.7	0.1	0.06	12.7	0.1	1.1	1	0	0	1	1	1	0	Protein	phosphatase	2C
NmrA	PF05368.8	gi|379005018|ref|YP_005260690.1|	-	0.077	12.2	0.2	0.091	12.0	0.1	1.0	1	0	0	1	1	1	0	NmrA-like	family
Lzipper-MIP1	PF14389.1	gi|379005018|ref|YP_005260690.1|	-	0.13	12.3	0.1	0.15	12.1	0.1	1.1	1	0	0	1	1	1	0	Leucine-zipper	of	ternary	complex	factor	MIP1
Glycos_transf_1	PF00534.15	gi|379005019|ref|YP_005260691.1|	-	8e-25	87.2	0.0	3.5e-24	85.1	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|379005019|ref|YP_005260691.1|	-	6.1e-13	48.8	0.0	1e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|379005019|ref|YP_005260691.1|	-	3e-11	43.6	0.0	1.6e-10	41.2	0.0	2.2	2	1	1	3	3	3	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.6	gi|379005019|ref|YP_005260691.1|	-	0.00012	21.6	0.1	0.0018	17.7	0.0	2.3	1	1	2	3	3	3	1	Starch	synthase	catalytic	domain
Glyco_trans_4_4	PF13579.1	gi|379005019|ref|YP_005260691.1|	-	0.0014	18.8	0.0	0.0034	17.5	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
DUF1972	PF09314.6	gi|379005019|ref|YP_005260691.1|	-	0.013	14.9	2.0	0.059	12.8	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1972)
DUF3492	PF11997.3	gi|379005019|ref|YP_005260691.1|	-	0.029	13.9	0.0	0.058	12.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3492)
Glyco_tran_28_C	PF04101.11	gi|379005019|ref|YP_005260691.1|	-	0.11	12.1	0.0	0.23	11.1	0.0	1.5	1	0	0	1	1	1	0	Glycosyltransferase	family	28	C-terminal	domain
Hydrolase_4	PF12146.3	gi|379005019|ref|YP_005260691.1|	-	0.14	12.0	0.4	5.2	6.9	0.1	2.9	4	0	0	4	4	4	0	Putative	lysophospholipase
Epimerase_2	PF02350.14	gi|379005020|ref|YP_005260692.1|	-	1.3e-89	300.3	0.1	1.6e-89	300.1	0.1	1.0	1	0	0	1	1	1	1	UDP-N-acetylglucosamine	2-epimerase
DALR_1	PF05746.10	gi|379005020|ref|YP_005260692.1|	-	0.022	14.6	0.1	0.73	9.8	0.0	2.4	2	0	0	2	2	2	0	DALR	anticodon	binding	domain
Glyco_tran_WecB	PF03808.8	gi|379005020|ref|YP_005260692.1|	-	0.16	11.4	0.0	7.1	5.9	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	transferase	WecB/TagA/CpsF	family
Glycos_transf_1	PF00534.15	gi|379005021|ref|YP_005260693.1|	-	4e-15	55.6	0.1	6.1e-15	55.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|379005021|ref|YP_005260693.1|	-	6.8e-14	52.1	0.0	1.2e-12	48.1	0.0	2.2	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|379005021|ref|YP_005260693.1|	-	9.6e-11	41.8	0.0	1.8e-10	40.9	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|379005021|ref|YP_005260693.1|	-	4.5e-07	29.7	0.2	1.9e-06	27.7	0.1	2.1	2	1	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|379005021|ref|YP_005260693.1|	-	0.00048	20.3	0.0	0.00071	19.7	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	4-like	domain
ISN1	PF06437.6	gi|379005021|ref|YP_005260693.1|	-	0.0058	15.4	0.1	0.01	14.5	0.0	1.3	1	0	0	1	1	1	1	IMP-specific	5'-nucleotidase
PaREP1	PF05942.6	gi|379005023|ref|YP_005260695.1|	-	5e-35	119.8	1.1	5e-35	119.8	0.7	1.8	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DSHCT	PF08148.7	gi|379005026|ref|YP_005260698.1|	-	0.071	12.3	0.0	0.085	12.0	0.0	1.1	1	0	0	1	1	1	0	DSHCT	(NUC185)	domain
PaREP1	PF05942.6	gi|379005028|ref|YP_005260700.1|	-	6.3e-38	129.1	2.6	6.3e-38	129.1	1.8	1.8	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
Myb_DNA-binding	PF00249.26	gi|379005028|ref|YP_005260700.1|	-	0.5	10.4	2.4	0.79	9.8	0.6	2.1	2	0	0	2	2	2	0	Myb-like	DNA-binding	domain
Arch_ATPase	PF01637.13	gi|379005029|ref|YP_005260701.1|	-	3.8e-60	203.5	0.0	4.7e-60	203.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|379005029|ref|YP_005260701.1|	-	0.0034	17.4	0.1	0.013	15.5	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|379005029|ref|YP_005260701.1|	-	0.0061	15.6	0.0	0.011	14.9	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
DAP3	PF10236.4	gi|379005029|ref|YP_005260701.1|	-	0.017	14.0	0.0	0.032	13.1	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
ChaC	PF04752.7	gi|379005029|ref|YP_005260701.1|	-	0.018	15.0	0.0	0.03	14.2	0.0	1.3	1	0	0	1	1	1	0	ChaC-like	protein
AAA_10	PF12846.2	gi|379005029|ref|YP_005260701.1|	-	0.027	13.8	0.0	0.066	12.6	0.0	1.6	2	0	0	2	2	2	0	AAA-like	domain
AAA_22	PF13401.1	gi|379005029|ref|YP_005260701.1|	-	0.044	13.9	0.0	0.077	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379005029|ref|YP_005260701.1|	-	0.068	12.8	0.0	0.5	9.9	0.0	2.2	2	0	0	2	2	2	0	NACHT	domain
DEDD_Tnp_IS110	PF01548.12	gi|379005029|ref|YP_005260701.1|	-	0.1	12.2	0.1	0.37	10.4	0.0	2.0	2	0	0	2	2	2	0	Transposase
AAA_33	PF13671.1	gi|379005029|ref|YP_005260701.1|	-	0.11	12.3	0.0	0.31	10.9	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
PIN	PF01850.16	gi|379005030|ref|YP_005260702.1|	-	0.0058	16.9	0.0	0.0064	16.8	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|379005032|ref|YP_005260704.1|	-	6.4e-13	48.1	1.8	9.5e-13	47.5	1.3	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF86	PF01934.12	gi|379005034|ref|YP_005260706.1|	-	1.2e-15	57.1	0.0	1.5e-15	56.9	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
NTP_transf_2	PF01909.18	gi|379005036|ref|YP_005260708.1|	-	0.066	13.5	0.5	0.19	12.0	0.4	1.9	1	1	0	1	1	1	0	Nucleotidyltransferase	domain
PaREP1	PF05942.6	gi|379005037|ref|YP_005260709.1|	-	5.3e-37	126.2	1.5	5.3e-37	126.2	1.1	1.8	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DUF1626	PF07788.6	gi|379005038|ref|YP_005260710.1|	-	1.2e-26	92.2	0.3	1.2e-26	92.2	0.2	1.8	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF1626)
DUF3782	PF12644.2	gi|379005038|ref|YP_005260710.1|	-	2.2e-14	52.9	15.2	9e-13	47.8	10.3	2.8	2	1	0	2	2	1	1	Protein	of	unknown	function	(DUF3782)
Apolipoprotein	PF01442.13	gi|379005038|ref|YP_005260710.1|	-	6.1e-05	22.6	5.8	9.3e-05	22.0	4.0	1.2	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
TBPIP	PF07106.8	gi|379005038|ref|YP_005260710.1|	-	0.0008	18.9	1.1	0.0012	18.4	0.8	1.2	1	0	0	1	1	1	1	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
WXG100	PF06013.7	gi|379005038|ref|YP_005260710.1|	-	0.0008	19.3	0.7	0.0037	17.2	0.0	2.0	1	1	1	2	2	2	1	Proteins	of	100	residues	with	WXG
DUF1664	PF07889.7	gi|379005038|ref|YP_005260710.1|	-	0.00082	19.1	1.3	0.0013	18.4	0.9	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
Tektin	PF03148.9	gi|379005038|ref|YP_005260710.1|	-	0.002	16.7	5.0	0.0028	16.2	3.5	1.1	1	0	0	1	1	1	1	Tektin	family
DUF4200	PF13863.1	gi|379005038|ref|YP_005260710.1|	-	0.0021	17.9	5.6	0.0034	17.3	3.9	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4200)
AAA_13	PF13166.1	gi|379005038|ref|YP_005260710.1|	-	0.0036	15.8	1.5	0.0043	15.6	1.0	1.0	1	0	0	1	1	1	1	AAA	domain
DUF2229	PF09989.4	gi|379005038|ref|YP_005260710.1|	-	0.0036	16.7	0.3	0.0057	16.1	0.2	1.3	1	0	0	1	1	1	1	CoA	enzyme	activase	uncharacterised	domain	(DUF2229)
DUF4446	PF14584.1	gi|379005038|ref|YP_005260710.1|	-	0.0043	16.8	1.0	0.0094	15.7	0.7	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4446)
PV-1	PF06637.6	gi|379005038|ref|YP_005260710.1|	-	0.0056	15.3	1.0	0.0076	14.8	0.7	1.2	1	0	0	1	1	1	1	PV-1	protein	(PLVAP)
Baculo_PEP_C	PF04513.7	gi|379005038|ref|YP_005260710.1|	-	0.0069	16.2	0.2	0.01	15.6	0.1	1.2	1	0	0	1	1	1	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Fzo_mitofusin	PF04799.8	gi|379005038|ref|YP_005260710.1|	-	0.011	15.1	1.2	0.017	14.4	0.8	1.2	1	0	0	1	1	1	0	fzo-like	conserved	region
COG5	PF10392.4	gi|379005038|ref|YP_005260710.1|	-	0.015	15.2	0.6	0.03	14.2	0.4	1.4	1	0	0	1	1	1	0	Golgi	transport	complex	subunit	5
V_ATPase_I	PF01496.14	gi|379005038|ref|YP_005260710.1|	-	0.017	13.0	0.1	0.017	13.0	0.0	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DUF2450	PF10475.4	gi|379005038|ref|YP_005260710.1|	-	0.018	13.9	0.4	0.025	13.5	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
DPM3	PF08285.6	gi|379005038|ref|YP_005260710.1|	-	0.02	14.7	4.9	0.032	14.0	0.5	2.5	1	1	1	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
DUF1451	PF07295.6	gi|379005038|ref|YP_005260710.1|	-	0.027	14.2	2.1	0.046	13.4	1.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1451)
HAUS6_N	PF14661.1	gi|379005038|ref|YP_005260710.1|	-	0.045	13.0	1.5	0.058	12.7	1.1	1.1	1	0	0	1	1	1	0	HAUS	augmin-like	complex	subunit	6	N-terminus
AAA_32	PF13654.1	gi|379005038|ref|YP_005260710.1|	-	0.05	12.2	2.9	0.069	11.7	2.0	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1640	PF07798.6	gi|379005038|ref|YP_005260710.1|	-	0.05	13.6	2.0	0.076	13.0	1.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF4201	PF13870.1	gi|379005038|ref|YP_005260710.1|	-	0.053	12.9	6.4	0.087	12.2	4.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4201)
Snapin_Pallidin	PF14712.1	gi|379005038|ref|YP_005260710.1|	-	0.068	13.4	2.8	0.092	13.0	1.1	1.8	1	1	1	2	2	2	0	Snapin/Pallidin
Prominin	PF05478.6	gi|379005038|ref|YP_005260710.1|	-	0.094	10.2	0.1	0.12	9.9	0.0	1.1	1	0	0	1	1	1	0	Prominin
APG6	PF04111.7	gi|379005038|ref|YP_005260710.1|	-	0.11	11.5	3.6	0.14	11.1	2.5	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
Mod_r	PF07200.8	gi|379005038|ref|YP_005260710.1|	-	0.11	12.3	6.5	0.46	10.4	4.7	1.6	1	1	0	1	1	1	0	Modifier	of	rudimentary	(Mod(r))	protein
Seryl_tRNA_N	PF02403.17	gi|379005038|ref|YP_005260710.1|	-	0.13	12.2	6.8	0.24	11.4	4.7	1.4	1	0	0	1	1	1	0	Seryl-tRNA	synthetase	N-terminal	domain
LMP	PF04778.7	gi|379005038|ref|YP_005260710.1|	-	0.16	11.6	3.2	0.28	10.9	1.3	1.5	1	1	0	1	1	1	0	LMP	repeated	region
Syntaxin-6_N	PF09177.6	gi|379005038|ref|YP_005260710.1|	-	0.36	11.2	6.1	3.5	8.1	3.8	2.1	1	1	1	2	2	2	0	Syntaxin	6,	N-terminal
Prefoldin	PF02996.12	gi|379005038|ref|YP_005260710.1|	-	0.44	10.2	10.4	0.26	10.9	1.8	2.6	2	1	1	3	3	3	0	Prefoldin	subunit
Atg14	PF10186.4	gi|379005038|ref|YP_005260710.1|	-	0.53	9.1	4.4	0.76	8.6	3.1	1.2	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Fmp27_WPPW	PF10359.4	gi|379005038|ref|YP_005260710.1|	-	0.6	8.4	4.1	0.79	8.0	2.9	1.1	1	0	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
Kinetocho_Slk19	PF12709.2	gi|379005038|ref|YP_005260710.1|	-	1	9.4	7.4	3.7	7.6	1.3	2.3	1	1	1	2	2	2	0	Central	kinetochore-associated
Prefoldin_2	PF01920.15	gi|379005038|ref|YP_005260710.1|	-	2.1	8.1	10.5	22	4.8	7.3	2.1	1	1	0	1	1	1	0	Prefoldin	subunit
UPF0449	PF15136.1	gi|379005038|ref|YP_005260710.1|	-	2.7	8.2	6.8	0.88	9.8	1.7	2.0	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0449
Syntaxin	PF00804.20	gi|379005038|ref|YP_005260710.1|	-	3.1	8.0	8.1	20	5.3	5.7	2.1	1	1	0	1	1	1	0	Syntaxin
TPX2	PF06886.6	gi|379005038|ref|YP_005260710.1|	-	5	7.2	11.9	0.62	10.1	3.3	2.2	1	1	1	2	2	2	0	Targeting	protein	for	Xklp2	(TPX2)
Vps51	PF08700.6	gi|379005038|ref|YP_005260710.1|	-	5.1	7.0	8.7	7.2e+02	0.1	5.9	2.3	1	1	0	1	1	1	0	Vps51/Vps67
Antitoxin-MazE	PF04014.13	gi|379005039|ref|YP_005260711.1|	-	6e-15	54.5	0.3	1.2e-14	53.5	0.1	1.6	1	1	1	2	2	2	1	Antidote-toxin	recognition	MazE
AbrB-like	PF14250.1	gi|379005039|ref|YP_005260711.1|	-	0.084	12.7	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
SH3_2	PF07653.12	gi|379005039|ref|YP_005260711.1|	-	0.13	11.7	0.0	0.21	11.0	0.0	1.4	1	1	0	1	1	1	0	Variant	SH3	domain
eIF-1a	PF01176.14	gi|379005039|ref|YP_005260711.1|	-	0.19	11.1	1.2	0.81	9.1	0.8	2.0	1	1	0	1	1	1	0	Translation	initiation	factor	1A	/	IF-1
PaREP1	PF05942.6	gi|379005040|ref|YP_005260712.1|	-	2.1e-15	56.6	0.0	2.8e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
DUF86	PF01934.12	gi|379005042|ref|YP_005260714.1|	-	3e-16	59.1	0.0	3.4e-16	58.9	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF86
Peptidase_M50	PF02163.17	gi|379005046|ref|YP_005260718.1|	-	3e-15	55.6	6.7	1.8e-14	53.1	4.7	2.2	1	1	0	1	1	1	1	Peptidase	family	M50
GHMP_kinases_N	PF00288.21	gi|379005047|ref|YP_005260719.1|	-	3.9e-14	52.4	1.5	1.3e-13	50.7	0.3	2.3	2	0	0	2	2	2	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|379005047|ref|YP_005260719.1|	-	7.6e-12	45.2	0.4	2.3e-11	43.7	0.1	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GalKase_gal_bdg	PF10509.4	gi|379005047|ref|YP_005260719.1|	-	6.3e-09	34.9	0.0	1.3e-08	33.9	0.0	1.5	1	0	0	1	1	1	1	Galactokinase	galactose-binding	signature
PCMT	PF01135.14	gi|379005047|ref|YP_005260719.1|	-	0.12	11.8	0.0	0.37	10.2	0.0	1.6	2	0	0	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
GalP_UDP_transf	PF01087.17	gi|379005048|ref|YP_005260720.1|	-	1.4e-22	80.6	0.0	4.9e-22	78.8	0.0	1.8	2	0	0	2	2	2	1	Galactose-1-phosphate	uridyl	transferase,	N-terminal	domain
GalP_UDP_tr_C	PF02744.12	gi|379005048|ref|YP_005260720.1|	-	8.4e-13	48.1	0.1	1.5e-12	47.3	0.1	1.5	1	0	0	1	1	1	1	Galactose-1-phosphate	uridyl	transferase,	C-terminal	domain
HIT	PF01230.18	gi|379005048|ref|YP_005260720.1|	-	2.3e-08	34.4	0.1	2.8e-05	24.5	0.0	2.5	2	0	0	2	2	2	2	HIT	domain
DcpS_C	PF11969.3	gi|379005048|ref|YP_005260720.1|	-	0.0089	16.2	0.1	0.086	13.0	0.0	2.1	2	0	0	2	2	2	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
Ribosomal_L30	PF00327.15	gi|379005049|ref|YP_005260721.1|	-	2.2e-15	55.9	0.0	3.6e-15	55.2	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_S5_C	PF03719.10	gi|379005050|ref|YP_005260722.1|	-	9.7e-25	85.6	0.3	2.2e-24	84.5	0.1	1.7	2	0	0	2	2	2	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.15	gi|379005050|ref|YP_005260722.1|	-	1e-24	86.0	2.0	2.1e-24	85.0	1.4	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
RNase_HII	PF01351.13	gi|379005051|ref|YP_005260723.1|	-	2.6e-36	125.1	0.0	3.1e-36	124.9	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
DUF629	PF04780.7	gi|379005052|ref|YP_005260724.1|	-	0.0028	16.2	0.2	0.0028	16.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF629)
Ribosomal_L37e	PF01907.14	gi|379005052|ref|YP_005260724.1|	-	0.012	15.4	0.0	0.017	14.9	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L37e
zf-C2H2_4	PF13894.1	gi|379005052|ref|YP_005260724.1|	-	0.042	14.2	0.4	0.067	13.5	0.3	1.3	1	0	0	1	1	1	0	C2H2-type	zinc	finger
LIM	PF00412.17	gi|379005052|ref|YP_005260724.1|	-	0.077	13.0	0.7	0.1	12.6	0.5	1.3	1	1	0	1	1	1	0	LIM	domain
GFA	PF04828.9	gi|379005052|ref|YP_005260724.1|	-	0.078	12.9	0.0	0.078	12.9	0.0	1.1	1	0	0	1	1	1	0	Glutathione-dependent	formaldehyde-activating	enzyme
zf-trcl	PF13451.1	gi|379005052|ref|YP_005260724.1|	-	0.11	12.1	0.0	0.11	12.0	0.0	1.3	1	0	0	1	1	1	0	Probable	zinc-binding	domain
PadR	PF03551.9	gi|379005053|ref|YP_005260725.1|	-	7.6e-20	70.4	1.1	7.6e-20	70.4	0.7	1.7	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|379005053|ref|YP_005260725.1|	-	5.3e-05	23.1	0.0	9e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|379005053|ref|YP_005260725.1|	-	0.0036	17.1	0.2	0.012	15.4	0.0	2.0	2	0	0	2	2	2	1	Winged	helix-turn-helix
Replic_Relax	PF13814.1	gi|379005053|ref|YP_005260725.1|	-	0.007	16.2	0.1	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Replication-relaxation
HxlR	PF01638.12	gi|379005053|ref|YP_005260725.1|	-	0.041	13.5	0.2	0.1	12.2	0.0	1.8	2	1	0	2	2	2	0	HxlR-like	helix-turn-helix
Cdc6_C	PF09079.6	gi|379005053|ref|YP_005260725.1|	-	0.099	12.3	0.2	0.44	10.2	0.0	2.2	2	1	0	2	2	2	0	CDC6,	C	terminal
Mrr_N	PF14338.1	gi|379005053|ref|YP_005260725.1|	-	0.11	12.6	0.1	0.39	10.8	0.0	2.0	2	1	0	2	2	2	0	Mrr	N-terminal	domain
NAD_synthase	PF02540.12	gi|379005054|ref|YP_005260726.1|	-	3.7e-72	242.1	0.0	4.6e-72	241.8	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|379005054|ref|YP_005260726.1|	-	4e-07	28.9	0.0	0.00021	19.9	0.0	2.2	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|379005054|ref|YP_005260726.1|	-	0.00028	20.4	0.0	0.0016	17.9	0.0	1.9	2	0	0	2	2	2	1	Asparagine	synthase
QueC	PF06508.8	gi|379005054|ref|YP_005260726.1|	-	0.051	12.8	0.0	0.084	12.1	0.0	1.3	1	0	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
Thiolase_N	PF00108.18	gi|379005055|ref|YP_005260727.1|	-	2.3e-80	269.3	0.0	2.9e-80	269.0	0.0	1.1	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379005055|ref|YP_005260727.1|	-	4.6e-38	129.4	0.2	1.4e-36	124.6	0.0	2.7	3	0	0	3	3	3	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|379005055|ref|YP_005260727.1|	-	1.5e-06	27.8	2.3	3.9e-06	26.5	1.4	1.7	1	1	0	1	1	1	1	Beta-ketoacyl	synthase,	N-terminal	domain
ABC_tran	PF00005.22	gi|379005056|ref|YP_005260728.1|	-	1.7e-34	119.0	0.0	2.5e-34	118.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005056|ref|YP_005260728.1|	-	1.7e-11	44.6	0.0	2.1e-08	34.5	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|379005056|ref|YP_005260728.1|	-	1.7e-06	27.4	0.0	7.9e-05	21.8	0.0	2.3	1	1	1	2	2	2	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|379005056|ref|YP_005260728.1|	-	0.00012	21.4	0.0	0.16	11.1	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|379005056|ref|YP_005260728.1|	-	0.00058	19.9	0.1	0.0023	17.9	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379005056|ref|YP_005260728.1|	-	0.00069	19.7	0.1	0.0097	16.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|379005056|ref|YP_005260728.1|	-	0.0012	18.3	0.1	0.012	15.0	0.0	2.0	2	0	0	2	2	2	1	AAA-like	domain
AAA_29	PF13555.1	gi|379005056|ref|YP_005260728.1|	-	0.0027	17.1	0.0	0.0063	16.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|379005056|ref|YP_005260728.1|	-	0.0047	16.8	0.1	0.021	14.7	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|379005056|ref|YP_005260728.1|	-	0.0049	16.5	0.1	0.017	14.8	0.0	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|379005056|ref|YP_005260728.1|	-	0.0052	16.2	0.2	0.016	14.6	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_23	PF13476.1	gi|379005056|ref|YP_005260728.1|	-	0.0052	17.1	1.3	0.0079	16.5	0.0	1.9	3	0	0	3	3	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|379005056|ref|YP_005260728.1|	-	0.019	14.7	0.1	0.051	13.2	0.0	1.7	2	0	0	2	2	2	0	Archaeal	ATPase
DUF258	PF03193.11	gi|379005056|ref|YP_005260728.1|	-	0.024	13.8	0.0	0.037	13.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
TOBE_2	PF08402.5	gi|379005056|ref|YP_005260728.1|	-	0.03	14.2	0.0	0.074	13.0	0.0	1.8	1	0	0	1	1	1	0	TOBE	domain
SbcCD_C	PF13558.1	gi|379005056|ref|YP_005260728.1|	-	0.032	14.1	0.1	0.17	11.7	0.1	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Miro	PF08477.8	gi|379005056|ref|YP_005260728.1|	-	0.034	14.6	0.0	0.067	13.6	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA	PF00004.24	gi|379005056|ref|YP_005260728.1|	-	0.038	14.1	0.2	0.84	9.8	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
UPF0079	PF02367.12	gi|379005056|ref|YP_005260728.1|	-	0.057	13.0	0.0	0.16	11.6	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
NACHT	PF05729.7	gi|379005056|ref|YP_005260728.1|	-	0.063	12.9	0.2	0.17	11.5	0.0	1.7	2	0	0	2	2	2	0	NACHT	domain
MobB	PF03205.9	gi|379005056|ref|YP_005260728.1|	-	0.1	12.3	0.0	0.23	11.1	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|379005056|ref|YP_005260728.1|	-	0.12	13.2	0.3	0.27	12.0	0.2	1.9	1	1	0	1	1	1	0	AAA	domain
ADK	PF00406.17	gi|379005056|ref|YP_005260728.1|	-	0.34	10.7	1.8	0.54	10.1	0.1	2.0	2	0	0	2	2	2	0	Adenylate	kinase
UPF0160	PF03690.8	gi|379005057|ref|YP_005260729.1|	-	8.5e-05	22.1	0.7	0.00032	20.2	0.2	1.9	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0160)
DUF387	PF04079.11	gi|379005057|ref|YP_005260729.1|	-	0.0068	15.7	0.1	1.1	8.6	0.0	2.4	2	0	0	2	2	2	2	Putative	transcriptional	regulators	(Ypuh-like)
Methyltransf_11	PF08241.7	gi|379005058|ref|YP_005260730.1|	-	1.5e-13	50.9	0.0	2.5e-13	50.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379005058|ref|YP_005260730.1|	-	8.6e-08	32.7	0.0	1.1e-07	32.4	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379005058|ref|YP_005260730.1|	-	2.3e-07	30.6	0.0	2.9e-07	30.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379005058|ref|YP_005260730.1|	-	4.7e-07	30.2	0.0	6.9e-07	29.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379005058|ref|YP_005260730.1|	-	8.5e-07	28.6	0.0	1.1e-06	28.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379005058|ref|YP_005260730.1|	-	1.2e-05	25.5	0.0	3.8e-05	23.9	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|379005058|ref|YP_005260730.1|	-	0.0005	20.1	0.0	0.00078	19.4	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
RrnaAD	PF00398.15	gi|379005058|ref|YP_005260730.1|	-	0.00054	19.0	0.0	0.0013	17.8	0.0	1.5	2	0	0	2	2	2	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_26	PF13659.1	gi|379005058|ref|YP_005260730.1|	-	0.0022	17.9	0.2	0.0032	17.4	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|379005058|ref|YP_005260730.1|	-	0.005	16.5	0.0	0.0068	16.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|379005058|ref|YP_005260730.1|	-	0.046	12.8	0.0	0.06	12.4	0.0	1.1	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
CMAS	PF02353.15	gi|379005058|ref|YP_005260730.1|	-	0.084	11.9	0.0	0.11	11.5	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
PLDc_2	PF13091.1	gi|379005059|ref|YP_005260731.1|	-	4.9e-26	90.9	0.0	4e-18	65.3	0.0	2.1	2	0	0	2	2	2	2	PLD-like	domain
PLDc	PF00614.17	gi|379005059|ref|YP_005260731.1|	-	3.2e-05	23.5	5.1	0.0094	15.7	0.3	2.5	2	0	0	2	2	2	2	Phospholipase	D	Active	site	motif
Regulator_TrmB	PF11495.3	gi|379005059|ref|YP_005260731.1|	-	0.0019	17.2	0.0	0.0029	16.6	0.0	1.3	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
PP_kinase_C	PF13090.1	gi|379005059|ref|YP_005260731.1|	-	0.005	15.4	0.1	0.011	14.3	0.1	1.6	2	0	0	2	2	2	1	Polyphosphate	kinase	C-terminal	domain
PQQ_3	PF13570.1	gi|379005059|ref|YP_005260731.1|	-	0.098	12.9	0.5	23	5.4	0.0	3.0	2	0	0	2	2	2	0	PQQ-like	domain
MarR_2	PF12802.2	gi|379005060|ref|YP_005260732.1|	-	3.9e-05	23.2	0.1	0.00024	20.6	0.0	2.2	3	0	0	3	3	3	1	MarR	family
Rrf2	PF02082.15	gi|379005060|ref|YP_005260732.1|	-	8.1e-05	22.6	0.1	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_45	PF14947.1	gi|379005060|ref|YP_005260732.1|	-	8.1e-05	22.3	0.0	0.00011	21.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_29	PF13551.1	gi|379005060|ref|YP_005260732.1|	-	0.00094	19.3	0.0	0.0015	18.6	0.0	1.5	1	1	0	1	1	1	1	Winged	helix-turn	helix
TrmB	PF01978.14	gi|379005060|ref|YP_005260732.1|	-	0.011	15.3	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
LexA_DNA_bind	PF01726.11	gi|379005060|ref|YP_005260732.1|	-	0.013	15.0	0.0	0.021	14.4	0.0	1.4	1	0	0	1	1	1	0	LexA	DNA	binding	domain
MarR	PF01047.17	gi|379005060|ref|YP_005260732.1|	-	0.017	14.8	0.0	0.025	14.2	0.0	1.3	1	0	0	1	1	1	0	MarR	family
DctQ	PF04290.7	gi|379005060|ref|YP_005260732.1|	-	0.022	14.5	0.1	0.029	14.1	0.1	1.2	1	0	0	1	1	1	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
HTH_24	PF13412.1	gi|379005060|ref|YP_005260732.1|	-	0.031	13.6	0.0	0.052	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF4423	PF14394.1	gi|379005060|ref|YP_005260732.1|	-	0.045	13.3	0.0	0.066	12.7	0.0	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
RNA_pol_Rpc34	PF05158.7	gi|379005060|ref|YP_005260732.1|	-	0.071	12.2	0.0	0.094	11.8	0.0	1.1	1	0	0	1	1	1	0	RNA	polymerase	Rpc34	subunit
HTH_Crp_2	PF13545.1	gi|379005060|ref|YP_005260732.1|	-	0.073	12.8	0.1	0.16	11.7	0.0	1.6	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
PIN	PF01850.16	gi|379005061|ref|YP_005260733.1|	-	5.7e-07	29.8	0.8	7.2e-07	29.5	0.6	1.3	1	1	0	1	1	1	1	PIN	domain
IalB	PF06776.7	gi|379005061|ref|YP_005260733.1|	-	0.0062	16.3	0.0	0.0079	16.0	0.0	1.1	1	0	0	1	1	1	1	Invasion	associated	locus	B	(IalB)	protein
DUF1471	PF07338.8	gi|379005061|ref|YP_005260733.1|	-	0.096	12.3	1.5	1.5	8.4	0.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1471)
Ribosomal_L29	PF00831.18	gi|379005065|ref|YP_005260737.1|	-	0.042	13.5	2.4	0.081	12.6	0.3	2.0	1	1	1	2	2	2	0	Ribosomal	L29	protein
MarR_2	PF12802.2	gi|379005066|ref|YP_005260738.1|	-	0.00025	20.6	0.0	0.00039	20.0	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|379005066|ref|YP_005260738.1|	-	0.0012	18.4	0.0	0.0017	17.9	0.0	1.2	1	0	0	1	1	1	1	HTH	domain
HTH_1	PF00126.22	gi|379005066|ref|YP_005260738.1|	-	0.0029	17.3	0.0	0.0041	16.8	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
MarR	PF01047.17	gi|379005066|ref|YP_005260738.1|	-	0.0059	16.2	0.0	0.0078	15.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|379005066|ref|YP_005260738.1|	-	0.0064	15.8	0.0	0.0093	15.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379005066|ref|YP_005260738.1|	-	0.0093	15.6	0.0	0.011	15.4	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|379005066|ref|YP_005260738.1|	-	0.013	15.4	0.0	0.016	15.1	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.2	gi|379005066|ref|YP_005260738.1|	-	0.037	13.8	0.0	0.049	13.4	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2250	PF10007.4	gi|379005066|ref|YP_005260738.1|	-	0.15	12.0	0.0	0.18	11.7	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Tmemb_185A	PF10269.4	gi|379005070|ref|YP_005260742.1|	-	2.5	7.6	10.9	3.3	7.2	7.6	1.1	1	0	0	1	1	1	0	Transmembrane	Fragile-X-F	protein
BTP	PF05232.7	gi|379005070|ref|YP_005260742.1|	-	9.4	6.0	10.8	0.25	11.0	2.6	1.9	2	0	0	2	2	2	0	Bacterial	Transmembrane	Pair	family
DUF1958	PF09211.5	gi|379005073|ref|YP_005260745.1|	-	0.029	14.4	0.1	0.029	14.4	0.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1958)
DUF2118	PF09891.4	gi|379005073|ref|YP_005260745.1|	-	0.03	14.0	0.4	0.03	14.0	0.3	1.0	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
DUF552	PF04472.7	gi|379005073|ref|YP_005260745.1|	-	0.038	13.9	0.1	0.36	10.7	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF552)
DUF4116	PF13475.1	gi|379005073|ref|YP_005260745.1|	-	0.053	13.0	0.1	0.17	11.4	0.0	1.8	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4116)
DUF1874	PF08960.5	gi|379005074|ref|YP_005260746.1|	-	0.022	14.4	0.0	0.03	14.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1874)
DDE_Tnp_ISL3	PF01610.12	gi|379005076|ref|YP_005260748.1|	-	0.089	12.3	0.5	0.12	11.8	0.4	1.1	1	0	0	1	1	1	0	Transposase
Sigma_reg_N	PF13800.1	gi|379005077|ref|YP_005260749.1|	-	0.36	10.9	4.2	0.52	10.3	2.9	1.2	1	0	0	1	1	1	0	Sigma	factor	regulator	N-terminal
PaRep2b	PF07775.6	gi|379005078|ref|YP_005260750.1|	-	4e-109	365.1	8.8	3.2e-68	230.2	0.2	2.0	1	1	1	2	2	2	2	PaRep2b	protein
Radical_SAM	PF04055.16	gi|379005079|ref|YP_005260751.1|	-	1.4e-08	35.1	0.0	1.9e-08	34.6	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Gp37_Gp68	PF07505.6	gi|379005079|ref|YP_005260751.1|	-	0.16	11.0	0.2	0.27	10.3	0.1	1.5	1	1	0	1	1	1	0	Phage	protein	Gp37/Gp68
HTH_DeoR	PF08220.7	gi|379005080|ref|YP_005260752.1|	-	0.074	12.5	0.3	0.46	10.0	0.1	2.1	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Nbl1_Borealin_N	PF10444.4	gi|379005080|ref|YP_005260752.1|	-	0.075	12.4	0.2	12	5.3	0.0	2.3	2	0	0	2	2	2	0	Nbl1	/	Borealin	N	terminal
FeoC	PF09012.5	gi|379005080|ref|YP_005260752.1|	-	0.077	12.7	0.8	0.18	11.5	0.0	1.9	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
DUF2191	PF09957.4	gi|379005081|ref|YP_005260753.1|	-	0.048	13.4	0.2	0.087	12.6	0.2	1.5	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
AAA_17	PF13207.1	gi|379005083|ref|YP_005260755.1|	-	2.8e-05	24.9	0.3	0.00025	21.8	0.0	2.7	3	2	0	3	3	3	1	AAA	domain
AAA_33	PF13671.1	gi|379005083|ref|YP_005260755.1|	-	0.0011	18.8	0.0	0.003	17.4	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Pribosyltran	PF00156.22	gi|379005083|ref|YP_005260755.1|	-	0.0018	18.0	0.0	0.011	15.4	0.0	2.3	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
AAA_16	PF13191.1	gi|379005083|ref|YP_005260755.1|	-	0.023	14.6	0.6	0.11	12.4	0.0	2.5	2	2	0	2	2	2	0	AAA	ATPase	domain
AP2	PF00847.15	gi|379005083|ref|YP_005260755.1|	-	0.03	14.4	0.1	0.076	13.1	0.1	1.7	1	0	0	1	1	1	0	AP2	domain
SKI	PF01202.17	gi|379005083|ref|YP_005260755.1|	-	0.034	14.0	0.0	0.087	12.6	0.0	1.7	1	0	0	1	1	1	0	Shikimate	kinase
AAA_25	PF13481.1	gi|379005083|ref|YP_005260755.1|	-	0.082	12.3	2.9	0.91	8.8	0.2	2.6	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|379005083|ref|YP_005260755.1|	-	0.1	11.6	0.0	0.28	10.2	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
TIP49	PF06068.8	gi|379005083|ref|YP_005260755.1|	-	0.11	11.1	0.0	0.18	10.4	0.0	1.2	1	0	0	1	1	1	0	TIP49	C-terminus
RNA_helicase	PF00910.17	gi|379005083|ref|YP_005260755.1|	-	0.12	12.5	0.0	0.25	11.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA	PF00004.24	gi|379005083|ref|YP_005260755.1|	-	0.13	12.4	0.0	0.27	11.4	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|379005083|ref|YP_005260755.1|	-	0.56	9.9	4.3	0.41	10.4	0.1	2.9	3	2	0	3	3	3	0	Part	of	AAA	domain
FumaraseC_C	PF10415.4	gi|379005084|ref|YP_005260756.1|	-	0.00078	19.4	0.1	2.8	8.0	0.0	3.6	3	0	0	3	3	3	2	Fumarase	C	C-terminus
Radical_SAM	PF04055.16	gi|379005084|ref|YP_005260756.1|	-	0.0049	17.0	0.0	0.01	15.9	0.0	1.7	1	1	0	1	1	1	1	Radical	SAM	superfamily
Herpes_UL37_2	PF07413.6	gi|379005085|ref|YP_005260757.1|	-	0.044	12.5	0.1	0.051	12.3	0.0	1.1	1	0	0	1	1	1	0	Betaherpesvirus	immediate-early	glycoprotein	UL37
DUF2874	PF11396.3	gi|379005085|ref|YP_005260757.1|	-	0.91	9.5	3.7	0.37	10.7	0.2	2.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2874)
DNA_processg_A	PF02481.10	gi|379005087|ref|YP_005260759.1|	-	5.3e-39	133.3	0.1	6.7e-39	132.9	0.1	1.1	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
BPL_C	PF02237.12	gi|379005087|ref|YP_005260759.1|	-	0.045	13.4	0.0	0.12	12.0	0.0	1.7	1	0	0	1	1	1	0	Biotin	protein	ligase	C	terminal	domain
LssY_C	PF14067.1	gi|379005089|ref|YP_005260761.1|	-	0.014	14.3	0.0	1.1	8.2	0.0	2.4	1	1	1	2	2	2	0	LssY	C-terminus
Rad51	PF08423.6	gi|379005090|ref|YP_005260762.1|	-	9.2e-42	142.7	0.0	1.1e-41	142.4	0.0	1.2	1	0	0	1	1	1	1	Rad51
KaiC	PF06745.8	gi|379005090|ref|YP_005260762.1|	-	8.4e-10	38.1	0.0	1.9e-09	36.9	0.0	1.6	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005090|ref|YP_005260762.1|	-	9.6e-10	38.1	0.0	1.6e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
HHH_5	PF14520.1	gi|379005090|ref|YP_005260762.1|	-	7.7e-09	35.6	0.3	2.3e-08	34.0	0.2	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
HHH	PF00633.18	gi|379005090|ref|YP_005260762.1|	-	0.00073	19.0	0.1	0.0023	17.5	0.0	2.0	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
AAA_10	PF12846.2	gi|379005090|ref|YP_005260762.1|	-	0.0032	16.9	0.0	0.0053	16.2	0.0	1.4	1	1	0	1	1	1	1	AAA-like	domain
Cdd1	PF11731.3	gi|379005090|ref|YP_005260762.1|	-	0.0043	16.9	0.0	0.0091	15.8	0.0	1.5	1	0	0	1	1	1	1	Pathogenicity	locus
Bac_DnaA	PF00308.13	gi|379005090|ref|YP_005260762.1|	-	0.027	14.0	0.0	0.048	13.2	0.0	1.4	1	0	0	1	1	1	0	Bacterial	dnaA	protein
PhoH	PF02562.11	gi|379005090|ref|YP_005260762.1|	-	0.034	13.3	0.0	0.062	12.5	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
IMS_HHH	PF11798.3	gi|379005090|ref|YP_005260762.1|	-	0.049	13.6	0.3	0.15	12.1	0.0	2.0	2	0	0	2	2	2	0	IMS	family	HHH	motif
DUF4332	PF14229.1	gi|379005090|ref|YP_005260762.1|	-	0.061	13.2	0.1	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4332)
IstB_IS21	PF01695.12	gi|379005090|ref|YP_005260762.1|	-	0.066	12.6	0.0	0.11	11.9	0.0	1.4	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Zot	PF05707.7	gi|379005090|ref|YP_005260762.1|	-	0.099	12.0	0.1	0.2	11.0	0.0	1.5	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
Antimicrobial15	PF08110.7	gi|379005090|ref|YP_005260762.1|	-	0.31	11.1	1.5	21	5.3	0.1	2.7	2	0	0	2	2	2	0	Ocellatin	family
Cob_adeno_trans	PF01923.13	gi|379005092|ref|YP_005260764.1|	-	4.2e-23	81.9	0.0	4.7e-23	81.7	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
DUF2108	PF09881.4	gi|379005092|ref|YP_005260764.1|	-	0.023	14.4	0.0	0.059	13.1	0.0	1.6	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2108)
DUF2201_N	PF13203.1	gi|379005093|ref|YP_005260765.1|	-	2.3e-28	99.2	0.1	4.6e-27	94.9	0.0	2.0	1	1	0	1	1	1	1	Putative	metallopeptidase	domain
DUF2201	PF09967.4	gi|379005093|ref|YP_005260765.1|	-	8.4e-16	58.1	0.1	1.5e-15	57.3	0.0	1.4	1	0	0	1	1	1	1	VWA-like	domain	(DUF2201)
VWA_CoxE	PF05762.9	gi|379005093|ref|YP_005260765.1|	-	6.2e-06	25.5	0.1	1.3e-05	24.4	0.0	1.5	1	1	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
DUF955	PF06114.8	gi|379005093|ref|YP_005260765.1|	-	0.00031	20.4	0.0	0.00071	19.2	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF955)
VWA	PF00092.23	gi|379005093|ref|YP_005260765.1|	-	0.00088	19.0	0.0	0.0016	18.1	0.0	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Sigma54_activat	PF00158.21	gi|379005094|ref|YP_005260766.1|	-	2.4e-05	23.8	0.0	0.16	11.3	0.0	2.2	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|379005094|ref|YP_005260766.1|	-	3.5e-05	23.5	0.0	0.0097	15.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA	PF00004.24	gi|379005094|ref|YP_005260766.1|	-	8.8e-05	22.7	0.0	0.00021	21.4	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|379005094|ref|YP_005260766.1|	-	0.0016	18.4	0.0	0.039	13.9	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|379005094|ref|YP_005260766.1|	-	0.0027	17.6	0.0	0.16	11.8	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379005094|ref|YP_005260766.1|	-	0.0098	16.0	0.0	0.081	13.0	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379005094|ref|YP_005260766.1|	-	0.019	15.7	0.0	0.074	13.8	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379005094|ref|YP_005260766.1|	-	0.021	14.5	0.0	0.051	13.3	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|379005094|ref|YP_005260766.1|	-	0.024	14.9	0.0	0.06	13.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|379005094|ref|YP_005260766.1|	-	0.081	12.7	0.0	0.16	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Ank_2	PF12796.2	gi|379005096|ref|YP_005260768.1|	-	1.8e-34	117.9	2.0	2.8e-20	72.4	0.0	4.4	2	2	1	3	3	3	3	Ankyrin	repeats	(3	copies)
Ank	PF00023.25	gi|379005096|ref|YP_005260768.1|	-	1.1e-32	110.2	6.5	5.2e-10	38.6	0.0	6.4	6	0	0	6	6	6	5	Ankyrin	repeat
Ank_3	PF13606.1	gi|379005096|ref|YP_005260768.1|	-	9.3e-28	93.5	7.3	7.8e-08	31.8	0.0	8.0	8	1	0	8	8	8	5	Ankyrin	repeat
Ank_4	PF13637.1	gi|379005096|ref|YP_005260768.1|	-	1.7e-27	95.2	7.5	2e-13	50.4	0.1	7.3	5	4	3	8	8	8	5	Ankyrin	repeats	(many	copies)
Ank_5	PF13857.1	gi|379005096|ref|YP_005260768.1|	-	7.7e-27	92.7	11.2	7.2e-13	48.3	0.1	6.5	5	1	1	6	6	6	4	Ankyrin	repeats	(many	copies)
Ank_2	PF12796.2	gi|379005097|ref|YP_005260769.1|	-	8.8e-32	109.3	1.1	2.9e-20	72.4	0.0	4.3	3	1	1	4	4	4	3	Ankyrin	repeats	(3	copies)
Ank	PF00023.25	gi|379005097|ref|YP_005260769.1|	-	1.3e-31	106.7	8.3	7.2e-11	41.3	0.1	5.8	6	0	0	6	6	6	4	Ankyrin	repeat
Ank_3	PF13606.1	gi|379005097|ref|YP_005260769.1|	-	8.1e-25	84.4	4.8	3.6e-06	26.6	0.0	7.0	7	1	0	7	7	7	4	Ankyrin	repeat
Ank_5	PF13857.1	gi|379005097|ref|YP_005260769.1|	-	4e-24	84.0	4.5	5.2e-12	45.5	0.1	5.6	4	1	1	5	5	5	4	Ankyrin	repeats	(many	copies)
Ank_4	PF13637.1	gi|379005097|ref|YP_005260769.1|	-	1.3e-21	76.5	6.3	3.3e-11	43.3	0.0	6.8	5	2	2	7	7	7	5	Ankyrin	repeats	(many	copies)
Ank_2	PF12796.2	gi|379005098|ref|YP_005260770.1|	-	7.8e-35	119.0	1.7	1.3e-20	73.5	0.0	4.1	3	2	0	3	3	3	3	Ankyrin	repeats	(3	copies)
Ank	PF00023.25	gi|379005098|ref|YP_005260770.1|	-	3.8e-32	108.4	2.9	6.2e-08	32.0	0.0	7.8	7	2	0	7	7	7	5	Ankyrin	repeat
Ank_3	PF13606.1	gi|379005098|ref|YP_005260770.1|	-	1.2e-25	87.0	7.4	9e-05	22.3	0.0	8.6	9	2	2	11	11	11	5	Ankyrin	repeat
Ank_5	PF13857.1	gi|379005098|ref|YP_005260770.1|	-	1.1e-24	85.8	8.6	1e-11	44.6	0.0	6.9	4	2	3	7	7	7	5	Ankyrin	repeats	(many	copies)
Ank_4	PF13637.1	gi|379005098|ref|YP_005260770.1|	-	2.9e-24	84.9	5.6	5.4e-11	42.6	0.0	6.8	5	2	2	7	7	7	6	Ankyrin	repeats	(many	copies)
Ank_2	PF12796.2	gi|379005099|ref|YP_005260771.1|	-	7.9e-70	231.2	14.4	4.8e-27	94.1	0.1	5.2	2	2	3	5	5	5	5	Ankyrin	repeats	(3	copies)
Ank	PF00023.25	gi|379005099|ref|YP_005260771.1|	-	7.7e-44	145.3	10.6	2.1e-10	39.8	0.0	7.6	7	1	0	7	7	7	6	Ankyrin	repeat
Ank_3	PF13606.1	gi|379005099|ref|YP_005260771.1|	-	2.9e-35	116.7	9.7	3.1e-06	26.9	0.1	9.2	8	2	3	11	11	11	5	Ankyrin	repeat
Ank_5	PF13857.1	gi|379005099|ref|YP_005260771.1|	-	7.3e-32	108.6	14.7	1.5e-12	47.2	0.1	7.5	5	1	2	7	7	7	6	Ankyrin	repeats	(many	copies)
Ank_4	PF13637.1	gi|379005099|ref|YP_005260771.1|	-	2.7e-31	107.3	9.0	3.3e-11	43.3	0.0	7.2	5	2	2	7	7	7	5	Ankyrin	repeats	(many	copies)
DUF2984	PF11203.3	gi|379005099|ref|YP_005260771.1|	-	0.094	12.8	1.0	1.1	9.3	0.0	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2984)
Ank	PF00023.25	gi|379005100|ref|YP_005260772.1|	-	1.3e-27	94.2	0.0	2.7e-09	36.3	0.0	3.3	3	0	0	3	3	3	3	Ankyrin	repeat
Ank_2	PF12796.2	gi|379005100|ref|YP_005260772.1|	-	1.2e-23	83.2	0.0	1.1e-17	64.1	0.0	2.2	1	1	1	2	2	2	2	Ankyrin	repeats	(3	copies)
Ank_5	PF13857.1	gi|379005100|ref|YP_005260772.1|	-	5.2e-23	80.5	0.1	3.7e-10	39.7	0.1	3.3	1	1	2	3	3	3	3	Ankyrin	repeats	(many	copies)
Ank_3	PF13606.1	gi|379005100|ref|YP_005260772.1|	-	2.2e-20	70.6	0.0	1.9e-06	27.5	0.0	3.6	3	0	0	3	3	3	3	Ankyrin	repeat
Ank_4	PF13637.1	gi|379005100|ref|YP_005260772.1|	-	3.3e-17	62.4	0.0	2e-11	44.0	0.0	3.5	3	1	1	4	4	4	2	Ankyrin	repeats	(many	copies)
Ank	PF00023.25	gi|379005101|ref|YP_005260773.1|	-	1.7e-33	112.7	5.2	6.7e-11	41.4	0.0	6.1	6	0	0	6	6	6	5	Ankyrin	repeat
Ank_2	PF12796.2	gi|379005101|ref|YP_005260773.1|	-	5.2e-32	110.0	1.0	1.5e-20	73.3	0.0	4.3	2	2	1	3	3	3	3	Ankyrin	repeats	(3	copies)
Ank_3	PF13606.1	gi|379005101|ref|YP_005260773.1|	-	4.3e-29	97.6	1.6	4.3e-07	29.5	0.0	7.6	7	0	0	7	7	7	5	Ankyrin	repeat
Ank_5	PF13857.1	gi|379005101|ref|YP_005260773.1|	-	1.9e-22	78.7	7.8	4.5e-12	45.8	0.0	6.1	5	1	1	6	6	6	4	Ankyrin	repeats	(many	copies)
Ank_4	PF13637.1	gi|379005101|ref|YP_005260773.1|	-	5.1e-22	77.8	0.4	4.1e-10	39.8	0.1	5.4	4	2	1	5	5	5	4	Ankyrin	repeats	(many	copies)
Tim44	PF04280.10	gi|379005101|ref|YP_005260773.1|	-	0.065	13.2	0.1	0.11	12.4	0.0	1.3	1	0	0	1	1	1	0	Tim44-like	domain
Shigella_OspC	PF06128.6	gi|379005101|ref|YP_005260773.1|	-	0.066	12.7	0.0	10	5.4	0.1	3.6	2	2	3	5	5	5	0	Shigella	flexneri	OspC	protein
PaRep2b	PF07775.6	gi|379005102|ref|YP_005260774.1|	-	1.4e-124	416.1	19.9	3.2e-76	256.6	4.9	2.0	1	1	1	2	2	2	2	PaRep2b	protein
OrfB_Zn_ribbon	PF07282.6	gi|379005104|ref|YP_005260776.1|	-	1.8e-11	43.5	0.0	6.2e-11	41.7	0.0	2.0	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|379005104|ref|YP_005260776.1|	-	0.0041	16.9	0.7	0.009	15.8	0.5	1.5	1	0	0	1	1	1	1	Double	zinc	ribbon
DNA_RNApol_7kD	PF03604.8	gi|379005104|ref|YP_005260776.1|	-	0.017	14.5	3.0	0.03	13.8	1.5	1.8	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ribbon_3	PF13248.1	gi|379005104|ref|YP_005260776.1|	-	0.043	13.0	0.8	1.9	7.8	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
FYDLN_acid	PF09538.5	gi|379005104|ref|YP_005260776.1|	-	0.046	14.3	0.3	0.096	13.2	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
FYVE_2	PF02318.11	gi|379005104|ref|YP_005260776.1|	-	0.071	13.0	0.6	0.82	9.5	0.0	2.5	2	1	1	3	3	3	0	FYVE-type	zinc	finger
HypA	PF01155.14	gi|379005104|ref|YP_005260776.1|	-	0.35	10.5	1.8	1.2	8.8	1.3	1.9	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
UPF0547	PF10571.4	gi|379005104|ref|YP_005260776.1|	-	0.6	9.8	3.3	1.9	8.2	2.3	1.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zinc_ribbon_4	PF13717.1	gi|379005104|ref|YP_005260776.1|	-	1.5	8.5	6.3	23	4.7	4.4	2.5	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|379005104|ref|YP_005260776.1|	-	2.1	7.9	6.9	25	4.5	4.8	2.5	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379005104|ref|YP_005260776.1|	-	3.3	7.3	5.1	13	5.3	1.1	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379005112|ref|YP_005260784.1|	-	4.6e-14	51.8	0.0	1.3e-13	50.4	0.0	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|379005112|ref|YP_005260784.1|	-	0.0011	18.7	0.6	0.0025	17.5	0.4	1.6	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-NADH-PPase	PF09297.6	gi|379005112|ref|YP_005260784.1|	-	0.0012	18.3	2.8	0.0023	17.4	2.0	1.5	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|379005112|ref|YP_005260784.1|	-	0.0044	16.7	4.6	0.59	9.9	2.1	2.7	2	0	0	2	2	2	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.1	gi|379005112|ref|YP_005260784.1|	-	0.0066	15.6	2.0	1.3	8.3	0.0	2.7	3	0	0	3	3	3	2	zinc-ribbon	domain
IBR	PF01485.16	gi|379005112|ref|YP_005260784.1|	-	0.015	15.1	0.4	0.33	10.8	0.1	2.6	2	0	0	2	2	2	0	IBR	domain
zf-ISL3	PF14690.1	gi|379005112|ref|YP_005260784.1|	-	0.029	14.3	1.3	4.1	7.5	0.1	2.8	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_4	PF13717.1	gi|379005112|ref|YP_005260784.1|	-	0.044	13.4	1.7	0.78	9.4	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF1638	PF07796.6	gi|379005112|ref|YP_005260784.1|	-	0.081	12.5	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1638)
RHH_1	PF01402.16	gi|379005112|ref|YP_005260784.1|	-	0.082	12.8	1.9	9.8	6.2	0.0	4.1	4	0	0	4	4	4	0	Ribbon-helix-helix	protein,	copG	family
Ribosomal_L37e	PF01907.14	gi|379005112|ref|YP_005260784.1|	-	0.11	12.3	0.6	0.22	11.3	0.4	1.5	1	0	0	1	1	1	0	Ribosomal	protein	L37e
NRDD	PF13597.1	gi|379005112|ref|YP_005260784.1|	-	0.13	10.3	0.0	0.2	9.6	0.0	1.2	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
DNA_RNApol_7kD	PF03604.8	gi|379005112|ref|YP_005260784.1|	-	0.18	11.3	1.4	0.45	10.0	1.0	1.7	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-ZPR1	PF03367.8	gi|379005112|ref|YP_005260784.1|	-	0.24	10.5	1.0	1.5	7.9	0.0	2.3	1	1	1	2	2	2	0	ZPR1	zinc-finger	domain
zf-IS66	PF13005.2	gi|379005112|ref|YP_005260784.1|	-	0.35	10.8	3.1	1.7	8.6	0.1	2.7	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_5	PF13719.1	gi|379005112|ref|YP_005260784.1|	-	0.68	9.5	6.0	15	5.2	4.1	2.5	1	1	0	1	1	1	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|379005112|ref|YP_005260784.1|	-	2.1	8.1	6.9	21	4.9	0.6	2.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0547
DUF1610	PF07754.6	gi|379005112|ref|YP_005260784.1|	-	7.1	6.8	10.7	2.5	8.3	0.4	3.1	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1610)
BRCA2	PF00634.13	gi|379005113|ref|YP_005260785.1|	-	0.11	11.7	0.2	0.31	10.3	0.0	1.8	2	0	0	2	2	2	0	BRCA2	repeat
DeoC	PF01791.4	gi|379005114|ref|YP_005260786.1|	-	2.3e-23	82.7	0.0	2.6e-23	82.5	0.0	1.0	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
Acylphosphatase	PF00708.13	gi|379005115|ref|YP_005260787.1|	-	5.5e-28	96.9	0.1	6e-28	96.7	0.1	1.0	1	0	0	1	1	1	1	Acylphosphatase
DUF1495	PF07381.6	gi|379005116|ref|YP_005260788.1|	-	3.7e-23	80.9	0.0	4.4e-23	80.7	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
TrmB	PF01978.14	gi|379005117|ref|YP_005260789.1|	-	2.8e-05	23.7	0.2	0.00012	21.7	0.1	2.0	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|379005117|ref|YP_005260789.1|	-	0.00019	20.7	0.5	0.00047	19.5	0.1	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.1	gi|379005117|ref|YP_005260789.1|	-	0.0005	19.4	0.0	0.0012	18.1	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|379005117|ref|YP_005260789.1|	-	0.0032	17.0	0.0	0.007	15.9	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_28	PF13518.1	gi|379005117|ref|YP_005260789.1|	-	0.015	15.3	0.0	0.049	13.6	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain
PaaX	PF07848.7	gi|379005117|ref|YP_005260789.1|	-	0.015	15.2	0.1	0.033	14.1	0.1	1.5	1	0	0	1	1	1	0	PaaX-like	protein
MarR_2	PF12802.2	gi|379005117|ref|YP_005260789.1|	-	0.023	14.3	0.0	0.054	13.1	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.1	gi|379005117|ref|YP_005260789.1|	-	0.033	14.5	0.1	4.4	7.6	0.0	2.4	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
RPA_C	PF08784.6	gi|379005117|ref|YP_005260789.1|	-	0.045	14.1	0.0	0.08	13.3	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
Fe_dep_repress	PF01325.14	gi|379005117|ref|YP_005260789.1|	-	0.048	13.6	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_10	PF04967.7	gi|379005117|ref|YP_005260789.1|	-	0.065	12.8	0.1	1.2	8.7	0.0	2.8	3	0	0	3	3	3	0	HTH	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|379005117|ref|YP_005260789.1|	-	0.14	11.9	0.0	0.3	10.8	0.0	1.5	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
ABC_tran	PF00005.22	gi|379005119|ref|YP_005260791.1|	-	1.1e-21	77.5	0.0	2e-21	76.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.18	gi|379005119|ref|YP_005260791.1|	-	6.2e-07	29.1	4.9	1.3e-06	28.0	3.4	1.4	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
AAA_21	PF13304.1	gi|379005119|ref|YP_005260791.1|	-	1.2e-06	28.7	0.0	0.038	13.9	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|379005119|ref|YP_005260791.1|	-	0.00024	20.5	0.0	0.00044	19.7	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379005119|ref|YP_005260791.1|	-	0.00066	19.8	0.1	0.0017	18.4	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379005119|ref|YP_005260791.1|	-	0.0031	18.3	0.0	0.0066	17.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|379005119|ref|YP_005260791.1|	-	0.01	15.3	0.1	0.08	12.5	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379005119|ref|YP_005260791.1|	-	0.011	15.8	0.0	0.027	14.6	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
SMC_N	PF02463.14	gi|379005119|ref|YP_005260791.1|	-	0.012	14.8	0.1	4.2	6.5	0.0	2.2	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379005119|ref|YP_005260791.1|	-	0.015	14.8	0.0	0.031	13.8	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|379005119|ref|YP_005260791.1|	-	0.032	14.5	0.0	0.067	13.4	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|379005119|ref|YP_005260791.1|	-	0.068	12.0	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA	PF00004.24	gi|379005119|ref|YP_005260791.1|	-	0.12	12.5	0.8	0.75	9.9	0.5	2.1	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|379005119|ref|YP_005260791.1|	-	0.18	11.4	0.2	0.39	10.3	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
PaRep2b	PF07775.6	gi|379005121|ref|YP_005260793.1|	-	8.2e-126	420.2	13.7	1.1e-78	264.7	4.4	2.3	1	1	1	2	2	2	2	PaRep2b	protein
GARS_C	PF02843.11	gi|379005121|ref|YP_005260793.1|	-	1.8	8.8	5.4	1.8	8.7	1.0	3.1	3	0	0	3	3	3	0	Phosphoribosylglycinamide	synthetase,	C	domain
PhoU	PF01895.14	gi|379005121|ref|YP_005260793.1|	-	4.7	7.7	0.0	4.7	7.7	0.0	3.9	4	0	0	4	4	4	0	PhoU	domain
DUF1122	PF06557.6	gi|379005122|ref|YP_005260794.1|	-	7.7e-38	129.3	0.2	8.8e-38	129.1	0.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1122)
DUF308	PF03729.8	gi|379005124|ref|YP_005260796.1|	-	0.00019	21.3	0.8	0.00021	21.1	0.5	1.1	1	0	0	1	1	1	1	Short	repeat	of	unknown	function	(DUF308)
DUF4190	PF13828.1	gi|379005124|ref|YP_005260796.1|	-	0.011	15.2	5.9	0.078	12.5	4.0	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4190)
DUF4282	PF14110.1	gi|379005124|ref|YP_005260796.1|	-	0.015	15.4	1.0	0.017	15.2	0.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4282)
FUSC	PF04632.7	gi|379005124|ref|YP_005260796.1|	-	0.017	13.6	0.7	0.017	13.5	0.5	1.0	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Polysacc_synt_C	PF14667.1	gi|379005124|ref|YP_005260796.1|	-	0.038	13.7	1.1	0.046	13.5	0.8	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
MARVEL	PF01284.18	gi|379005124|ref|YP_005260796.1|	-	0.042	13.6	1.5	0.044	13.6	1.0	1.0	1	0	0	1	1	1	0	Membrane-associating	domain
UPF0104	PF03706.8	gi|379005124|ref|YP_005260796.1|	-	0.043	13.0	1.4	0.047	12.9	1.0	1.0	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0104)
MgtE	PF01769.11	gi|379005124|ref|YP_005260796.1|	-	0.052	13.8	0.8	0.06	13.6	0.6	1.1	1	0	0	1	1	1	0	Divalent	cation	transporter
NfeD	PF01957.13	gi|379005124|ref|YP_005260796.1|	-	0.21	11.7	1.7	0.23	11.5	1.2	1.0	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
DUF2929	PF11151.3	gi|379005124|ref|YP_005260796.1|	-	0.31	11.1	1.5	0.61	10.2	1.0	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2929)
Ost4	PF10215.4	gi|379005124|ref|YP_005260796.1|	-	0.59	9.6	2.7	3.3	7.2	0.1	2.1	2	0	0	2	2	2	0	Oligosaccaryltransferase
NrfD_2	PF14589.1	gi|379005125|ref|YP_005260797.1|	-	0.014	15.0	1.1	0.015	15.0	0.8	1.0	1	0	0	1	1	1	0	Polysulfide	reductase
NfeD	PF01957.13	gi|379005125|ref|YP_005260797.1|	-	0.024	14.7	0.1	0.025	14.6	0.0	1.0	1	0	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
Claudin_2	PF13903.1	gi|379005125|ref|YP_005260797.1|	-	0.045	13.4	0.0	0.047	13.3	0.0	1.0	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF1616	PF07760.6	gi|379005125|ref|YP_005260797.1|	-	0.14	11.2	0.1	0.15	11.1	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1616)
DUF4190	PF13828.1	gi|379005125|ref|YP_005260797.1|	-	6.1	6.4	7.4	4.3	6.9	0.8	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4190)
RimK	PF08443.6	gi|379005126|ref|YP_005260798.1|	-	5.9e-57	192.2	0.0	8.4e-57	191.7	0.0	1.2	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379005126|ref|YP_005260798.1|	-	6e-19	68.4	0.0	1.3e-18	67.3	0.0	1.5	2	0	0	2	2	2	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|379005126|ref|YP_005260798.1|	-	7.5e-14	51.2	0.0	1.1e-13	50.6	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|379005126|ref|YP_005260798.1|	-	7.9e-14	51.8	0.0	1.2e-13	51.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|379005126|ref|YP_005260798.1|	-	4.6e-12	45.3	0.0	6.6e-12	44.8	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|379005126|ref|YP_005260798.1|	-	1.5e-09	37.5	0.0	7.3e-09	35.2	0.0	2.0	1	1	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.8	gi|379005126|ref|YP_005260798.1|	-	1.6e-07	30.9	0.0	3.8e-06	26.4	0.0	2.2	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp	PF02222.17	gi|379005126|ref|YP_005260798.1|	-	4.7e-05	22.8	0.0	0.00011	21.6	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_ST	PF14397.1	gi|379005126|ref|YP_005260798.1|	-	5.5e-05	22.4	0.0	0.031	13.3	0.0	2.4	2	1	0	2	2	2	2	Sugar-transfer	associated	ATP-grasp
ATP-grasp_5	PF13549.1	gi|379005126|ref|YP_005260798.1|	-	0.00094	18.4	0.0	0.0059	15.8	0.0	2.0	2	0	0	2	2	2	1	ATP-grasp	domain
TTL	PF03133.10	gi|379005126|ref|YP_005260798.1|	-	0.015	14.2	0.0	0.046	12.6	0.0	1.7	2	0	0	2	2	2	0	Tubulin-tyrosine	ligase	family
ATPgrasp_TupA	PF14305.1	gi|379005126|ref|YP_005260798.1|	-	0.043	13.1	0.0	0.063	12.5	0.0	1.2	1	0	0	1	1	1	0	TupA-like	ATPgrasp
ATPgrasp_YheCD	PF14398.1	gi|379005126|ref|YP_005260798.1|	-	0.15	10.8	0.0	1.3	7.7	0.0	2.1	1	1	1	2	2	2	0	YheC/D	like	ATP-grasp
DUF2203	PF09969.4	gi|379005127|ref|YP_005260799.1|	-	6.7e-30	103.7	0.1	2.7e-29	101.7	0.0	1.7	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
SWIM	PF04434.12	gi|379005128|ref|YP_005260800.1|	-	2.3e-08	33.3	0.2	4.5e-08	32.3	0.1	1.5	1	0	0	1	1	1	1	SWIM	zinc	finger
IF-2B	PF01008.12	gi|379005129|ref|YP_005260801.1|	-	5.5e-09	35.4	0.4	5.9e-08	32.0	0.3	2.0	1	1	0	1	1	1	1	Initiation	factor	2	subunit	family
ABC_tran	PF00005.22	gi|379005130|ref|YP_005260802.1|	-	5.5e-20	72.0	0.0	8.1e-20	71.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005130|ref|YP_005260802.1|	-	8.8e-15	55.4	0.0	1.1e-09	38.6	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|379005130|ref|YP_005260802.1|	-	4e-06	26.2	0.0	7.1e-06	25.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|379005130|ref|YP_005260802.1|	-	2.3e-05	23.7	0.0	0.016	14.4	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.12	gi|379005130|ref|YP_005260802.1|	-	9.3e-05	21.9	0.1	0.24	10.8	0.0	2.2	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_33	PF13671.1	gi|379005130|ref|YP_005260802.1|	-	0.00023	21.0	0.0	0.0032	17.3	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379005130|ref|YP_005260802.1|	-	0.00027	21.3	0.0	0.00055	20.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379005130|ref|YP_005260802.1|	-	0.00028	20.9	0.2	0.0005	20.1	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379005130|ref|YP_005260802.1|	-	0.0017	18.4	0.0	0.0078	16.3	0.0	2.0	1	1	1	2	2	2	1	AAA	domain
Zeta_toxin	PF06414.7	gi|379005130|ref|YP_005260802.1|	-	0.0027	16.8	0.0	0.0086	15.1	0.0	1.8	2	1	0	2	2	2	1	Zeta	toxin
T2SE	PF00437.15	gi|379005130|ref|YP_005260802.1|	-	0.0044	15.9	0.0	0.008	15.1	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
NTPase_1	PF03266.10	gi|379005130|ref|YP_005260802.1|	-	0.0052	16.5	0.0	0.021	14.5	0.0	1.9	2	1	0	2	2	2	1	NTPase
AAA_25	PF13481.1	gi|379005130|ref|YP_005260802.1|	-	0.0093	15.3	0.2	0.025	13.9	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379005130|ref|YP_005260802.1|	-	0.025	14.7	0.5	0.15	12.2	0.3	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|379005130|ref|YP_005260802.1|	-	0.026	14.2	0.1	0.18	11.5	0.0	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_15	PF13175.1	gi|379005130|ref|YP_005260802.1|	-	0.045	12.7	0.0	0.98	8.3	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
MutS_V	PF00488.16	gi|379005130|ref|YP_005260802.1|	-	0.066	12.6	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	V
ABC-3	PF00950.12	gi|379005131|ref|YP_005260803.1|	-	1.3e-18	67.2	30.6	1.7e-18	66.8	21.2	1.2	1	0	0	1	1	1	1	ABC	3	transport	family
FecCD	PF01032.13	gi|379005131|ref|YP_005260803.1|	-	0.00017	20.4	29.5	0.00017	20.4	20.5	2.0	1	1	1	2	2	2	1	FecCD	transport	family
Myosin_tail_1	PF01576.14	gi|379005132|ref|YP_005260804.1|	-	2e-10	39.1	28.4	1.5e-07	29.6	11.8	1.8	1	1	1	2	2	2	2	Myosin	tail
TMF_DNA_bd	PF12329.3	gi|379005132|ref|YP_005260804.1|	-	2.7e-08	33.4	27.3	0.00055	19.6	1.2	3.6	1	1	3	4	4	4	4	TATA	element	modulatory	factor	1	DNA	binding
AAA_13	PF13166.1	gi|379005132|ref|YP_005260804.1|	-	1.6e-07	30.2	9.5	2.4e-07	29.6	6.6	1.3	1	0	0	1	1	1	1	AAA	domain
Filament	PF00038.16	gi|379005132|ref|YP_005260804.1|	-	1.1e-06	28.3	28.6	8.1e-06	25.5	11.2	2.1	1	1	1	2	2	2	2	Intermediate	filament	protein
CENP-F_leu_zip	PF10473.4	gi|379005132|ref|YP_005260804.1|	-	1.3e-06	28.3	22.8	1.4e-05	24.9	9.5	2.2	1	1	1	2	2	2	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
GAS	PF13851.1	gi|379005132|ref|YP_005260804.1|	-	5.6e-06	25.6	26.2	0.0012	18.0	10.4	2.3	1	1	1	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
DivIVA	PF05103.8	gi|379005132|ref|YP_005260804.1|	-	6.6e-06	26.2	19.3	0.014	15.4	8.2	3.3	3	1	0	3	3	3	2	DivIVA	protein
Prefoldin_2	PF01920.15	gi|379005132|ref|YP_005260804.1|	-	1e-05	25.2	18.0	0.02	14.6	0.1	3.6	2	1	1	3	3	2	2	Prefoldin	subunit
Rab5-bind	PF09311.6	gi|379005132|ref|YP_005260804.1|	-	1.2e-05	25.2	28.9	0.0063	16.4	12.5	2.1	1	1	1	2	2	2	2	Rabaptin-like	protein
Nup54	PF13874.1	gi|379005132|ref|YP_005260804.1|	-	1.8e-05	24.3	20.8	2.2e-05	24.1	2.8	2.2	1	1	1	2	2	2	1	Nucleoporin	complex	subunit	54
ALIX_LYPXL_bnd	PF13949.1	gi|379005132|ref|YP_005260804.1|	-	2.3e-05	23.5	15.6	2.3e-05	23.5	10.8	2.1	1	1	1	2	2	2	1	ALIX	V-shaped	domain	binding	to	HIV
Reo_sigmaC	PF04582.7	gi|379005132|ref|YP_005260804.1|	-	3.6e-05	23.1	10.6	0.00088	18.5	0.6	2.7	2	1	1	3	3	2	2	Reovirus	sigma	C	capsid	protein
WEMBL	PF05701.6	gi|379005132|ref|YP_005260804.1|	-	3.8e-05	22.3	19.1	5.3e-05	21.8	13.3	1.1	1	0	0	1	1	1	1	Weak	chloroplast	movement	under	blue	light
APG6	PF04111.7	gi|379005132|ref|YP_005260804.1|	-	6.6e-05	22.1	26.6	0.00051	19.1	11.3	2.1	1	1	1	2	2	2	2	Autophagy	protein	Apg6
ADIP	PF11559.3	gi|379005132|ref|YP_005260804.1|	-	7.1e-05	22.7	29.5	0.0035	17.2	6.5	2.5	1	1	1	2	2	2	2	Afadin-	and	alpha	-actinin-Binding
AAA_27	PF13514.1	gi|379005132|ref|YP_005260804.1|	-	0.00012	19.9	22.2	0.00018	19.3	15.4	1.2	1	0	0	1	1	1	1	AAA	domain
Tropomyosin	PF00261.15	gi|379005132|ref|YP_005260804.1|	-	0.00014	21.0	23.4	0.0073	15.4	16.1	2.0	1	1	0	1	1	1	1	Tropomyosin
Laminin_II	PF06009.7	gi|379005132|ref|YP_005260804.1|	-	0.00015	21.5	16.3	0.0098	15.6	3.3	2.6	1	1	1	2	2	2	2	Laminin	Domain	II
ATG16	PF08614.6	gi|379005132|ref|YP_005260804.1|	-	0.00023	21.0	27.3	0.003	17.4	9.0	2.7	1	1	3	4	4	4	3	Autophagy	protein	16	(ATG16)
Lebercilin	PF15619.1	gi|379005132|ref|YP_005260804.1|	-	0.00025	20.5	28.0	0.002	17.5	19.4	2.1	1	1	0	1	1	1	1	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF972	PF06156.8	gi|379005132|ref|YP_005260804.1|	-	0.00025	21.3	16.2	0.0056	16.9	2.2	3.1	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF972)
Baculo_PEP_C	PF04513.7	gi|379005132|ref|YP_005260804.1|	-	0.00029	20.6	13.1	0.031	14.1	0.7	3.1	1	1	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Tropomyosin_1	PF12718.2	gi|379005132|ref|YP_005260804.1|	-	0.00039	20.2	23.8	0.084	12.7	9.5	2.3	1	1	1	2	2	2	2	Tropomyosin	like
Fmp27_WPPW	PF10359.4	gi|379005132|ref|YP_005260804.1|	-	0.00049	18.6	13.5	0.0028	16.1	1.1	2.1	1	1	1	2	2	2	2	RNA	pol	II	promoter	Fmp27	protein	domain
IncA	PF04156.9	gi|379005132|ref|YP_005260804.1|	-	0.00052	19.6	17.4	0.00052	19.6	12.0	3.6	3	1	2	5	5	3	3	IncA	protein
PspA_IM30	PF04012.7	gi|379005132|ref|YP_005260804.1|	-	0.00052	19.4	31.2	0.0063	15.9	2.6	3.4	1	1	2	3	3	3	1	PspA/IM30	family
EzrA	PF06160.7	gi|379005132|ref|YP_005260804.1|	-	0.00056	18.2	22.2	0.0077	14.4	15.4	2.0	1	1	0	1	1	1	1	Septation	ring	formation	regulator,	EzrA
CENP-Q	PF13094.1	gi|379005132|ref|YP_005260804.1|	-	0.00076	19.5	27.0	0.021	14.8	9.3	2.7	1	1	2	3	3	2	1	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
MAD	PF05557.8	gi|379005132|ref|YP_005260804.1|	-	0.00079	17.6	21.0	0.018	13.1	14.5	1.9	1	1	0	1	1	1	1	Mitotic	checkpoint	protein
bZIP_1	PF00170.16	gi|379005132|ref|YP_005260804.1|	-	0.0013	18.6	18.8	0.015	15.2	0.9	3.9	3	1	1	4	4	3	2	bZIP	transcription	factor
CALCOCO1	PF07888.6	gi|379005132|ref|YP_005260804.1|	-	0.0015	16.9	19.3	0.0037	15.6	5.3	2.3	1	1	1	2	2	2	2	Calcium	binding	and	coiled-coil	domain	(CALCOCO1)	like
MscS_porin	PF12795.2	gi|379005132|ref|YP_005260804.1|	-	0.0015	17.9	38.8	0.012	14.9	16.4	2.5	1	1	1	2	2	2	2	Mechanosensitive	ion	channel	porin	domain
FH2	PF02181.18	gi|379005132|ref|YP_005260804.1|	-	0.0015	17.4	13.9	0.0043	15.9	1.2	3.0	1	1	2	3	3	3	1	Formin	Homology	2	Domain
IFT57	PF10498.4	gi|379005132|ref|YP_005260804.1|	-	0.0016	17.2	19.5	0.029	13.1	4.5	2.4	1	1	1	2	2	2	1	Intra-flagellar	transport	protein	57
Phage_GP20	PF06810.6	gi|379005132|ref|YP_005260804.1|	-	0.0019	17.6	21.7	0.087	12.2	4.9	2.9	1	1	1	2	2	2	2	Phage	minor	structural	protein	GP20
Cortex-I_coil	PF09304.5	gi|379005132|ref|YP_005260804.1|	-	0.002	18.1	27.4	0.26	11.3	9.5	3.2	1	1	2	3	3	3	2	Cortexillin	I,	coiled	coil
Tektin	PF03148.9	gi|379005132|ref|YP_005260804.1|	-	0.002	16.7	23.3	0.0099	14.4	9.4	2.2	1	1	1	2	2	2	1	Tektin	family
Spc24	PF08286.6	gi|379005132|ref|YP_005260804.1|	-	0.0022	17.6	21.2	0.16	11.6	0.8	4.0	1	1	2	3	3	3	2	Spc24	subunit	of	Ndc80
NPV_P10	PF05531.7	gi|379005132|ref|YP_005260804.1|	-	0.0024	18.0	16.1	0.025	14.7	2.4	3.5	1	1	1	2	2	2	1	Nucleopolyhedrovirus	P10	protein
TPR_MLP1_2	PF07926.7	gi|379005132|ref|YP_005260804.1|	-	0.0026	17.5	32.2	0.071	12.8	12.3	3.0	1	1	1	2	2	2	1	TPR/MLP1/MLP2-like	protein
TBPIP	PF07106.8	gi|379005132|ref|YP_005260804.1|	-	0.0027	17.2	17.3	0.25	10.8	1.8	2.5	1	1	1	2	2	2	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Hormone_1	PF00103.15	gi|379005132|ref|YP_005260804.1|	-	0.0033	16.8	2.6	0.39	10.0	0.4	2.3	2	0	0	2	2	2	1	Somatotropin	hormone	family
DUF4600	PF15372.1	gi|379005132|ref|YP_005260804.1|	-	0.0037	17.4	24.2	0.0043	17.2	5.7	3.1	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4600)
Laminin_I	PF06008.9	gi|379005132|ref|YP_005260804.1|	-	0.0037	16.6	22.4	0.0056	16.0	15.5	1.2	1	0	0	1	1	1	1	Laminin	Domain	I
Prefoldin	PF02996.12	gi|379005132|ref|YP_005260804.1|	-	0.0038	16.8	24.2	0.067	12.8	1.9	4.3	2	1	3	5	5	5	2	Prefoldin	subunit
WXG100	PF06013.7	gi|379005132|ref|YP_005260804.1|	-	0.0038	17.1	18.9	0.29	11.1	0.1	4.0	2	1	2	4	4	4	1	Proteins	of	100	residues	with	WXG
Mnd1	PF03962.10	gi|379005132|ref|YP_005260804.1|	-	0.0043	16.7	23.0	0.12	12.0	2.1	2.5	1	1	1	2	2	2	2	Mnd1	family
Rootletin	PF15035.1	gi|379005132|ref|YP_005260804.1|	-	0.0045	16.9	27.9	0.16	11.9	12.2	2.1	1	1	1	2	2	2	2	Ciliary	rootlet	component,	centrosome	cohesion
DUF4201	PF13870.1	gi|379005132|ref|YP_005260804.1|	-	0.0047	16.3	23.9	0.008	15.6	13.3	2.7	1	1	2	3	3	3	1	Domain	of	unknown	function	(DUF4201)
FlaC_arch	PF05377.6	gi|379005132|ref|YP_005260804.1|	-	0.0053	16.6	7.9	0.48	10.3	0.8	4.1	1	1	3	4	4	4	1	Flagella	accessory	protein	C	(FlaC)
Spc7	PF08317.6	gi|379005132|ref|YP_005260804.1|	-	0.0058	15.3	20.7	0.52	8.9	11.2	2.3	1	1	1	2	2	2	1	Spc7	kinetochore	protein
BLOC1_2	PF10046.4	gi|379005132|ref|YP_005260804.1|	-	0.0065	16.5	17.3	0.069	13.2	1.5	3.7	1	1	3	4	4	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF948	PF06103.6	gi|379005132|ref|YP_005260804.1|	-	0.0068	16.2	14.2	0.032	14.0	0.4	3.7	2	1	2	4	4	3	1	Bacterial	protein	of	unknown	function	(DUF948)
DivIC	PF04977.10	gi|379005132|ref|YP_005260804.1|	-	0.0077	15.7	32.0	0.083	12.3	2.5	5.0	1	1	4	5	5	5	1	Septum	formation	initiator
DUF869	PF05911.6	gi|379005132|ref|YP_005260804.1|	-	0.0078	14.5	16.0	0.1	10.8	1.7	2.4	1	1	2	3	3	3	1	Plant	protein	of	unknown	function	(DUF869)
DUF3584	PF12128.3	gi|379005132|ref|YP_005260804.1|	-	0.0086	13.4	23.2	0.014	12.7	16.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3584)
GOLGA2L5	PF15070.1	gi|379005132|ref|YP_005260804.1|	-	0.0088	14.5	19.0	0.25	9.7	13.0	2.0	1	1	0	1	1	1	1	Putative	golgin	subfamily	A	member	2-like	protein	5
DUF904	PF06005.7	gi|379005132|ref|YP_005260804.1|	-	0.0094	16.2	4.5	0.0094	16.2	3.1	3.8	1	1	2	3	3	2	1	Protein	of	unknown	function	(DUF904)
Snapin_Pallidin	PF14712.1	gi|379005132|ref|YP_005260804.1|	-	0.0097	16.1	23.0	0.023	15.0	3.7	3.3	1	1	2	3	3	3	1	Snapin/Pallidin
Taxilin	PF09728.4	gi|379005132|ref|YP_005260804.1|	-	0.01	14.9	20.0	0.016	14.2	13.8	1.3	1	0	0	1	1	1	0	Myosin-like	coiled-coil	protein
Bacillus_HBL	PF05791.6	gi|379005132|ref|YP_005260804.1|	-	0.012	14.9	9.1	0.023	14.0	0.9	2.3	2	0	0	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF3450	PF11932.3	gi|379005132|ref|YP_005260804.1|	-	0.013	14.8	33.7	0.22	10.7	7.7	3.5	2	1	2	4	4	3	0	Protein	of	unknown	function	(DUF3450)
FUSC	PF04632.7	gi|379005132|ref|YP_005260804.1|	-	0.013	13.9	22.6	0.024	13.0	15.7	1.3	1	1	0	1	1	1	0	Fusaric	acid	resistance	protein	family
Macoilin	PF09726.4	gi|379005132|ref|YP_005260804.1|	-	0.014	13.7	26.1	0.079	11.2	18.2	1.7	1	1	0	1	1	1	0	Transmembrane	protein
Atg14	PF10186.4	gi|379005132|ref|YP_005260804.1|	-	0.014	14.3	28.3	12	4.7	19.7	2.2	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
zf-C4H2	PF10146.4	gi|379005132|ref|YP_005260804.1|	-	0.018	15.0	5.4	0.07	13.1	0.3	2.1	1	1	1	2	2	2	0	Zinc	finger-containing	protein
CorA	PF01544.13	gi|379005132|ref|YP_005260804.1|	-	0.022	13.8	19.4	0.11	11.5	11.8	2.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
TMF_TATA_bd	PF12325.3	gi|379005132|ref|YP_005260804.1|	-	0.022	14.4	22.2	0.053	13.2	6.0	3.2	1	1	2	3	3	3	0	TATA	element	modulatory	factor	1	TATA	binding
Jnk-SapK_ap_N	PF09744.4	gi|379005132|ref|YP_005260804.1|	-	0.022	14.7	21.0	1.2	9.1	7.3	3.1	1	1	1	3	3	3	0	JNK_SAPK-associated	protein-1
DUF342	PF03961.8	gi|379005132|ref|YP_005260804.1|	-	0.024	13.0	17.5	0.26	9.6	3.0	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF342)
FAD_binding_1	PF00667.15	gi|379005132|ref|YP_005260804.1|	-	0.028	13.8	4.9	0.05	13.0	3.4	1.4	1	0	0	1	1	1	0	FAD	binding	domain
Prominin	PF05478.6	gi|379005132|ref|YP_005260804.1|	-	0.028	11.9	5.8	0.043	11.3	4.0	1.2	1	0	0	1	1	1	0	Prominin
Spectrin	PF00435.16	gi|379005132|ref|YP_005260804.1|	-	0.031	14.5	20.3	0.067	13.4	2.2	2.8	1	1	1	2	2	2	0	Spectrin	repeat
Kinetocho_Slk19	PF12709.2	gi|379005132|ref|YP_005260804.1|	-	0.032	14.2	1.5	0.032	14.2	1.1	4.0	1	1	1	3	3	3	0	Central	kinetochore-associated
DMPK_coil	PF08826.5	gi|379005132|ref|YP_005260804.1|	-	0.035	13.9	1.6	0.035	13.9	1.1	3.8	2	1	1	3	3	3	0	DMPK	coiled	coil	domain	like
V_ATPase_I	PF01496.14	gi|379005132|ref|YP_005260804.1|	-	0.036	11.9	15.4	0.024	12.4	3.3	2.1	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
FliJ	PF02050.11	gi|379005132|ref|YP_005260804.1|	-	0.037	14.0	35.3	0.065	13.2	5.8	3.2	1	1	2	3	3	3	0	Flagellar	FliJ	protein
DUF1664	PF07889.7	gi|379005132|ref|YP_005260804.1|	-	0.039	13.7	10.1	1.7	8.4	4.1	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF2730	PF10805.3	gi|379005132|ref|YP_005260804.1|	-	0.042	13.5	9.1	1.5	8.5	0.6	4.1	2	1	2	5	5	4	0	Protein	of	unknown	function	(DUF2730)
Seryl_tRNA_N	PF02403.17	gi|379005132|ref|YP_005260804.1|	-	0.042	13.8	20.4	4	7.5	1.5	3.1	1	1	1	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Fib_alpha	PF08702.5	gi|379005132|ref|YP_005260804.1|	-	0.045	13.8	17.9	0.27	11.3	4.9	2.3	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
SlyX	PF04102.7	gi|379005132|ref|YP_005260804.1|	-	0.047	14.0	27.7	2.1	8.7	3.3	4.3	1	1	2	3	3	3	0	SlyX
L_lactis_ph-MCP	PF06673.6	gi|379005132|ref|YP_005260804.1|	-	0.051	12.3	2.3	1.5	7.5	0.0	2.2	2	0	0	2	2	2	0	Lactococcus	lactis	bacteriophage	major	capsid	protein
DUF3552	PF12072.3	gi|379005132|ref|YP_005260804.1|	-	0.051	12.7	23.6	0.036	13.2	1.8	2.4	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
NTR2	PF15458.1	gi|379005132|ref|YP_005260804.1|	-	0.052	12.7	24.2	1.6	7.9	3.5	3.9	1	1	3	4	4	4	0	Nineteen	complex-related	protein	2
DUF773	PF05600.7	gi|379005132|ref|YP_005260804.1|	-	0.068	11.9	15.8	0.54	8.9	5.5	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF773)
Syntaxin-6_N	PF09177.6	gi|379005132|ref|YP_005260804.1|	-	0.071	13.5	17.2	8.2	6.9	0.8	3.7	1	1	2	3	3	3	0	Syntaxin	6,	N-terminal
DegS	PF05384.6	gi|379005132|ref|YP_005260804.1|	-	0.076	12.2	20.8	0.24	10.6	1.0	3.1	1	1	2	3	3	3	0	Sensor	protein	DegS
phiKZ_IP	PF12699.2	gi|379005132|ref|YP_005260804.1|	-	0.078	11.8	4.7	0.57	9.0	0.0	2.3	2	0	0	2	2	2	0	phiKZ-like	phage	internal	head	proteins
MAAL_C	PF07476.6	gi|379005132|ref|YP_005260804.1|	-	0.085	11.7	0.6	0.13	11.2	0.4	1.3	1	0	0	1	1	1	0	Methylaspartate	ammonia-lyase	C-terminus
Vps5	PF09325.5	gi|379005132|ref|YP_005260804.1|	-	0.09	12.0	18.4	3.4	6.8	12.3	2.8	1	1	0	1	1	1	0	Vps5	C	terminal	like
Frigida	PF07899.6	gi|379005132|ref|YP_005260804.1|	-	0.1	11.3	10.2	0.25	10.0	2.9	2.1	2	0	0	2	2	2	0	Frigida-like	protein
HOOK	PF05622.7	gi|379005132|ref|YP_005260804.1|	-	0.1	10.3	26.9	0.087	10.6	11.5	2.0	1	1	1	2	2	2	0	HOOK	protein
She9_MDM33	PF05546.6	gi|379005132|ref|YP_005260804.1|	-	0.12	11.9	16.9	0.25	10.8	5.8	2.6	2	1	0	2	2	2	0	She9	/	Mdm33	family
BTV_NS2	PF04514.7	gi|379005132|ref|YP_005260804.1|	-	0.13	11.0	4.2	0.2	10.5	2.9	1.3	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
Med9	PF07544.8	gi|379005132|ref|YP_005260804.1|	-	0.13	11.9	19.7	0.5	10.1	1.2	3.3	1	1	2	3	3	3	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Osmo_CC	PF08946.5	gi|379005132|ref|YP_005260804.1|	-	0.13	12.2	9.0	0.93	9.5	1.9	2.9	2	1	0	2	2	2	0	Osmosensory	transporter	coiled	coil
MbeD_MobD	PF04899.7	gi|379005132|ref|YP_005260804.1|	-	0.14	12.0	20.7	0.29	11.0	0.2	4.3	2	1	2	4	4	4	0	MbeD/MobD	like
AATF-Che1	PF13339.1	gi|379005132|ref|YP_005260804.1|	-	0.14	12.2	18.9	1.4	9.1	3.8	3.0	1	1	2	3	3	3	0	Apoptosis	antagonizing	transcription	factor
Cast	PF10174.4	gi|379005132|ref|YP_005260804.1|	-	0.14	10.1	27.8	0.55	8.2	2.4	2.6	1	1	1	2	2	2	0	RIM-binding	protein	of	the	cytomatrix	active	zone
FliD_C	PF07195.7	gi|379005132|ref|YP_005260804.1|	-	0.15	11.2	16.3	0.097	11.9	0.3	3.2	2	1	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
MCPsignal	PF00015.16	gi|379005132|ref|YP_005260804.1|	-	0.16	11.4	7.3	0.55	9.7	3.8	2.0	1	1	1	2	2	2	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Cep57_MT_bd	PF06657.8	gi|379005132|ref|YP_005260804.1|	-	0.18	11.7	20.4	1.6	8.7	0.3	4.6	2	1	1	4	4	4	0	Centrosome	microtubule-binding	domain	of	Cep57
DUF2353	PF09789.4	gi|379005132|ref|YP_005260804.1|	-	0.18	10.9	19.7	0.033	13.4	7.5	2.1	1	1	1	2	2	2	0	Uncharacterized	coiled-coil	protein	(DUF2353)
Condensation	PF00668.15	gi|379005132|ref|YP_005260804.1|	-	0.21	10.3	9.8	0.027	13.3	2.0	2.2	1	1	1	2	2	2	0	Condensation	domain
Occludin_ELL	PF07303.8	gi|379005132|ref|YP_005260804.1|	-	0.23	12.2	18.8	6	7.6	2.9	3.2	1	1	2	3	3	3	0	Occludin	homology	domain
DUF4200	PF13863.1	gi|379005132|ref|YP_005260804.1|	-	0.24	11.3	24.5	0.66	9.9	1.4	2.7	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Ax_dynein_light	PF10211.4	gi|379005132|ref|YP_005260804.1|	-	0.31	10.8	20.8	2.4	7.9	4.8	3.2	1	1	2	3	3	3	0	Axonemal	dynein	light	chain
FlxA	PF14282.1	gi|379005132|ref|YP_005260804.1|	-	0.34	10.8	27.4	3.1	7.7	3.6	3.8	1	1	2	3	3	3	0	FlxA-like	protein
Hemerythrin	PF01814.18	gi|379005132|ref|YP_005260804.1|	-	0.34	11.0	11.0	7.8	6.6	5.0	3.2	1	1	1	2	2	2	0	Hemerythrin	HHE	cation	binding	domain
Mod_r	PF07200.8	gi|379005132|ref|YP_005260804.1|	-	0.36	10.7	24.5	6.6	6.6	5.3	3.1	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
HAUS-augmin3	PF14932.1	gi|379005132|ref|YP_005260804.1|	-	0.37	9.9	24.4	0.13	11.4	9.8	2.2	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	3
Uso1_p115_C	PF04871.8	gi|379005132|ref|YP_005260804.1|	-	0.37	10.7	23.5	0.11	12.3	6.2	3.1	1	1	2	3	3	3	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
HrpB7	PF09486.5	gi|379005132|ref|YP_005260804.1|	-	0.4	10.6	31.2	0.58	10.0	2.4	3.4	1	1	1	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
ERM	PF00769.14	gi|379005132|ref|YP_005260804.1|	-	0.45	10.0	29.7	0.036	13.6	4.0	2.2	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
DUF489	PF04356.7	gi|379005132|ref|YP_005260804.1|	-	0.51	9.9	12.6	0.44	10.0	1.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF489)
Uds1	PF15456.1	gi|379005132|ref|YP_005260804.1|	-	0.55	10.2	27.4	2.4	8.1	4.9	2.4	1	1	1	2	2	2	0	Up-regulated	During	Septation
HALZ	PF02183.13	gi|379005132|ref|YP_005260804.1|	-	0.62	9.8	28.1	2.6	7.8	0.2	5.1	2	1	4	6	6	6	0	Homeobox	associated	leucine	zipper
THOC7	PF05615.8	gi|379005132|ref|YP_005260804.1|	-	0.62	10.3	24.1	0.93	9.7	9.6	2.6	1	1	1	2	2	2	0	Tho	complex	subunit	7
DUF2968	PF11180.3	gi|379005132|ref|YP_005260804.1|	-	0.71	9.2	35.6	3.2	7.0	2.2	3.2	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2968)
SpoOE-like	PF09388.5	gi|379005132|ref|YP_005260804.1|	-	0.71	9.4	5.2	3.9	7.0	0.4	3.2	3	0	0	3	3	2	0	Spo0E	like	sporulation	regulatory	protein
YPEB	PF14620.1	gi|379005132|ref|YP_005260804.1|	-	0.75	8.7	16.2	0.34	9.8	1.1	2.3	1	1	1	2	2	2	0	YpeB	sporulation
T4SS	PF07996.6	gi|379005132|ref|YP_005260804.1|	-	1	9.2	25.0	7.8	6.3	2.9	2.5	1	1	1	2	2	2	0	Type	IV	secretion	system	proteins
CCDC155	PF14662.1	gi|379005132|ref|YP_005260804.1|	-	1.1	8.8	23.6	5	6.6	10.2	2.2	1	1	1	2	2	2	0	Coiled-coil	region	of	CCDC155
DUF812	PF05667.6	gi|379005132|ref|YP_005260804.1|	-	1.1	7.6	21.4	4.1	5.7	14.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
Enkurin	PF13864.1	gi|379005132|ref|YP_005260804.1|	-	1.1	9.4	19.6	3	8.1	5.8	3.2	1	1	1	2	2	2	0	Calmodulin-binding
COG5	PF10392.4	gi|379005132|ref|YP_005260804.1|	-	1.2	9.0	17.2	0.61	10.0	0.8	2.9	1	1	0	2	2	2	0	Golgi	transport	complex	subunit	5
bZIP_Maf	PF03131.12	gi|379005132|ref|YP_005260804.1|	-	1.2	9.4	29.4	5	7.5	1.3	5.1	1	1	4	5	5	5	0	bZIP	Maf	transcription	factor
Sulfatase_C	PF14707.1	gi|379005132|ref|YP_005260804.1|	-	1.3	9.3	6.3	17	5.7	0.1	3.1	1	1	2	3	3	3	0	C-terminal	region	of	aryl-sulfatase
COG2	PF06148.6	gi|379005132|ref|YP_005260804.1|	-	1.5	8.7	15.0	6.2	6.7	6.0	2.9	1	1	1	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Nsp1_C	PF05064.8	gi|379005132|ref|YP_005260804.1|	-	1.7	8.2	17.3	1.9	8.1	5.7	2.5	1	1	1	2	2	2	0	Nsp1-like	C-terminal	region
Scaffolding_pro	PF11418.3	gi|379005132|ref|YP_005260804.1|	-	1.8	8.9	10.5	3.5	8.0	0.6	2.9	1	1	1	2	2	2	0	Phi29	scaffolding	protein
Lge1	PF11488.3	gi|379005132|ref|YP_005260804.1|	-	2	8.6	16.6	13	6.1	0.8	3.8	1	1	2	4	4	3	0	Transcriptional	regulatory	protein	LGE1
DUF3573	PF12097.3	gi|379005132|ref|YP_005260804.1|	-	2.1	6.8	9.0	1.3	7.5	1.7	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3573)
rRNA_proc-arch	PF13234.1	gi|379005132|ref|YP_005260804.1|	-	2.1	7.4	15.6	0.35	9.9	1.0	3.1	1	1	3	4	4	4	0	rRNA-processing	arch	domain
DUF3810	PF12725.2	gi|379005132|ref|YP_005260804.1|	-	2.2	7.1	9.4	2.4	6.9	1.7	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3810)
DUF4140	PF13600.1	gi|379005132|ref|YP_005260804.1|	-	2.3	8.7	31.6	0.55	10.7	2.1	5.0	2	1	1	3	3	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
GLE1	PF07817.8	gi|379005132|ref|YP_005260804.1|	-	2.4	7.0	9.8	3.2	6.6	0.3	2.8	1	1	1	3	3	3	0	GLE1-like	protein
bZIP_2	PF07716.10	gi|379005132|ref|YP_005260804.1|	-	2.7	7.8	28.5	0.058	13.2	2.4	4.3	3	2	1	4	4	4	0	Basic	region	leucine	zipper
LMBR1	PF04791.11	gi|379005132|ref|YP_005260804.1|	-	2.8	6.4	7.9	19	3.6	5.5	1.9	1	1	0	1	1	1	0	LMBR1-like	membrane	protein
DUF641	PF04859.7	gi|379005132|ref|YP_005260804.1|	-	3.2	7.5	18.2	0.22	11.2	1.7	2.9	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF641)
GP41	PF00517.12	gi|379005132|ref|YP_005260804.1|	-	3.2	7.2	9.3	1.7	8.1	0.1	3.1	2	1	0	2	2	2	0	Retroviral	envelope	protein
DinB_2	PF12867.2	gi|379005132|ref|YP_005260804.1|	-	3.4	8.0	12.8	5e+03	-2.3	8.9	3.5	1	1	0	1	1	0	0	DinB	superfamily
DUF4164	PF13747.1	gi|379005132|ref|YP_005260804.1|	-	3.4	7.8	28.4	4.2	7.5	10.5	3.1	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
TMCO5	PF14992.1	gi|379005132|ref|YP_005260804.1|	-	3.5	6.6	16.2	2.7	7.0	6.0	1.9	1	1	1	2	2	2	0	TMCO5	family
HAP1_N	PF04849.8	gi|379005132|ref|YP_005260804.1|	-	3.7	6.3	22.7	1.3	7.8	3.9	2.7	1	1	2	3	3	3	0	HAP1	N-terminal	conserved	region
DUF4559	PF15112.1	gi|379005132|ref|YP_005260804.1|	-	3.8	6.5	8.6	5.9	5.9	5.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4559)
DUF724	PF05266.9	gi|379005132|ref|YP_005260804.1|	-	3.8	7.0	16.6	3.5	7.1	4.2	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF724)
DUF3186	PF11382.3	gi|379005132|ref|YP_005260804.1|	-	4.1	6.4	21.3	14	4.6	0.5	3.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3186)
Striatin	PF08232.7	gi|379005132|ref|YP_005260804.1|	-	4.3	7.6	20.4	4.8	7.4	7.1	2.3	1	1	1	2	2	2	0	Striatin	family
Tho2	PF11262.3	gi|379005132|ref|YP_005260804.1|	-	4.4	6.2	7.4	1.4e+02	1.3	5.1	2.1	1	1	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
TelA	PF05816.6	gi|379005132|ref|YP_005260804.1|	-	4.8	5.7	25.9	0.81	8.3	2.1	2.5	1	1	1	2	2	2	0	Toxic	anion	resistance	protein	(TelA)
Muted	PF14942.1	gi|379005132|ref|YP_005260804.1|	-	5.5	6.8	14.7	4.3	7.2	1.4	2.6	1	1	1	2	2	2	0	Organelle	biogenesis,	Muted-like	protein
Tup_N	PF08581.5	gi|379005132|ref|YP_005260804.1|	-	6.3	7.0	17.6	0.66	10.2	2.5	3.4	2	1	1	3	3	3	0	Tup	N-terminal
CDC37_N	PF03234.9	gi|379005132|ref|YP_005260804.1|	-	6.3	7.0	14.9	9.8	6.4	9.7	1.9	1	1	0	1	1	1	0	Cdc37	N	terminal	kinase	binding
DUF1043	PF06295.7	gi|379005132|ref|YP_005260804.1|	-	6.8	6.3	15.9	0.77	9.4	4.7	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1043)
Erp_C	PF06780.6	gi|379005132|ref|YP_005260804.1|	-	7	6.4	13.9	0.99	9.2	1.7	3.0	1	1	2	3	3	3	0	Erp	protein	C-terminus
MitMem_reg	PF13012.1	gi|379005132|ref|YP_005260804.1|	-	7.2	6.7	9.8	19	5.3	0.6	2.7	1	1	2	3	3	2	0	Maintenance	of	mitochondrial	structure	and	function
Syntaxin	PF00804.20	gi|379005132|ref|YP_005260804.1|	-	7.3	6.8	17.2	2.7e+03	-1.5	11.9	2.7	1	1	0	1	1	0	0	Syntaxin
PEP-utilisers_N	PF05524.8	gi|379005132|ref|YP_005260804.1|	-	7.3	6.4	18.8	11	5.8	2.7	3.3	1	1	2	3	3	3	0	PEP-utilising	enzyme,	N-terminal
XhlA	PF10779.4	gi|379005132|ref|YP_005260804.1|	-	7.5	6.5	14.9	3.2	7.7	0.6	3.2	2	1	1	3	3	3	0	Haemolysin	XhlA
DUF4407	PF14362.1	gi|379005132|ref|YP_005260804.1|	-	8	5.3	28.4	15	4.4	1.4	3.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4407)
Viral_P18	PF04521.8	gi|379005132|ref|YP_005260804.1|	-	9.4	5.7	22.1	2.8	7.4	1.2	3.5	1	1	2	3	3	3	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Spermine_synth	PF01564.12	gi|379005133|ref|YP_005260805.1|	-	4e-65	219.1	0.1	5.4e-65	218.7	0.1	1.0	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_26	PF13659.1	gi|379005133|ref|YP_005260805.1|	-	1.2e-07	31.8	0.0	4.9e-07	29.8	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379005133|ref|YP_005260805.1|	-	8.7e-06	26.2	0.0	2e-05	25.1	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379005133|ref|YP_005260805.1|	-	6.8e-05	23.2	0.0	0.00014	22.2	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379005133|ref|YP_005260805.1|	-	7.5e-05	22.3	0.0	0.00011	21.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379005133|ref|YP_005260805.1|	-	0.0046	16.3	0.0	0.0072	15.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_25	PF13649.1	gi|379005133|ref|YP_005260805.1|	-	0.015	15.6	0.0	0.074	13.4	0.0	2.0	2	0	0	2	2	2	0	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|379005133|ref|YP_005260805.1|	-	0.04	13.3	0.0	0.061	12.7	0.0	1.2	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
LPAM_1	PF08139.7	gi|379005134|ref|YP_005260806.1|	-	0.034	14.3	4.0	0.034	14.3	2.7	2.3	2	1	0	2	2	2	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
TPPK_C	PF12555.3	gi|379005134|ref|YP_005260806.1|	-	0.98	9.1	6.1	0.69	9.6	3.2	1.5	1	1	0	1	1	1	0	Thiamine	pyrophosphokinase	C	terminal
BatA	PF07584.6	gi|379005134|ref|YP_005260806.1|	-	2	8.6	6.8	6.4	7.0	0.2	2.1	2	0	0	2	2	2	0	Aerotolerance	regulator	N-terminal
BPD_transp_1	PF00528.17	gi|379005136|ref|YP_005260808.1|	-	9.9e-22	77.3	46.9	1.3e-13	50.9	9.2	3.1	1	1	2	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|379005137|ref|YP_005260809.1|	-	2.2e-34	118.7	0.0	2.8e-34	118.3	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005137|ref|YP_005260809.1|	-	3.8e-12	46.7	0.0	7.1e-07	29.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|379005137|ref|YP_005260809.1|	-	8.4e-06	25.8	0.1	3.3e-05	23.9	0.0	1.9	1	1	1	2	2	2	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|379005137|ref|YP_005260809.1|	-	0.00016	20.9	0.0	0.00026	20.2	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|379005137|ref|YP_005260809.1|	-	0.00023	21.3	0.0	0.00079	19.5	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|379005137|ref|YP_005260809.1|	-	0.0008	19.6	0.0	0.2	11.8	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|379005137|ref|YP_005260809.1|	-	0.0012	18.3	0.0	0.0022	17.4	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|379005137|ref|YP_005260809.1|	-	0.0012	18.5	0.0	0.038	13.6	0.0	2.1	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_28	PF13521.1	gi|379005137|ref|YP_005260809.1|	-	0.0037	17.2	0.1	0.016	15.1	0.0	2.0	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|379005137|ref|YP_005260809.1|	-	0.0045	16.8	0.1	0.019	14.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|379005137|ref|YP_005260809.1|	-	0.0047	16.0	0.0	0.21	10.5	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|379005137|ref|YP_005260809.1|	-	0.0086	15.7	0.1	0.018	14.6	0.0	1.6	2	0	0	2	2	1	1	NACHT	domain
Miro	PF08477.8	gi|379005137|ref|YP_005260809.1|	-	0.016	15.7	0.0	0.029	14.8	0.0	1.4	1	0	0	1	1	1	0	Miro-like	protein
AAA_17	PF13207.1	gi|379005137|ref|YP_005260809.1|	-	0.016	16.0	0.0	0.038	14.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|379005137|ref|YP_005260809.1|	-	0.026	13.9	0.0	0.047	13.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379005137|ref|YP_005260809.1|	-	0.032	13.3	0.1	0.15	11.2	0.0	2.0	2	1	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.18	gi|379005137|ref|YP_005260809.1|	-	0.039	13.8	0.0	0.061	13.2	0.0	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Rad17	PF03215.10	gi|379005137|ref|YP_005260809.1|	-	0.041	12.5	0.0	0.059	12.0	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
AAA_5	PF07728.9	gi|379005137|ref|YP_005260809.1|	-	0.042	13.5	0.1	0.14	11.9	0.1	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|379005137|ref|YP_005260809.1|	-	0.043	13.2	0.0	0.1	11.9	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
SbcCD_C	PF13558.1	gi|379005137|ref|YP_005260809.1|	-	0.051	13.5	0.2	0.18	11.7	0.1	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_14	PF13173.1	gi|379005137|ref|YP_005260809.1|	-	0.054	13.3	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|379005137|ref|YP_005260809.1|	-	0.062	13.6	0.0	0.2	11.9	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SMC_N	PF02463.14	gi|379005137|ref|YP_005260809.1|	-	0.066	12.4	0.1	2.7	7.1	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
MutS_V	PF00488.16	gi|379005137|ref|YP_005260809.1|	-	0.14	11.5	0.0	0.24	10.7	0.0	1.3	1	0	0	1	1	1	0	MutS	domain	V
RNA_helicase	PF00910.17	gi|379005137|ref|YP_005260809.1|	-	0.17	12.1	0.0	0.3	11.2	0.0	1.4	1	0	0	1	1	1	0	RNA	helicase
AAA_assoc_C	PF09821.4	gi|379005138|ref|YP_005260810.1|	-	9.8e-27	93.6	0.1	1.3e-26	93.2	0.1	1.2	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
PrkA	PF06798.7	gi|379005138|ref|YP_005260810.1|	-	0.081	12.1	0.0	0.1	11.9	0.0	1.1	1	0	0	1	1	1	0	PrkA	serine	protein	kinase	C-terminal	domain
DUF4121	PF13497.1	gi|379005138|ref|YP_005260810.1|	-	0.12	11.3	0.0	0.16	10.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4121)
DUF973	PF06157.6	gi|379005140|ref|YP_005260812.1|	-	3.6e-24	85.2	12.4	4.1e-24	85.0	8.6	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
DUF996	PF06195.8	gi|379005140|ref|YP_005260812.1|	-	0.0004	20.3	11.1	0.0004	20.3	7.7	2.4	1	1	0	2	2	2	1	Protein	of	unknown	function	(DUF996)
DUF1298	PF06974.8	gi|379005140|ref|YP_005260812.1|	-	0.062	13.1	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1298)
Claudin_2	PF13903.1	gi|379005140|ref|YP_005260812.1|	-	1.4	8.5	25.3	0.38	10.4	3.5	3.0	1	1	1	3	3	3	0	PMP-22/EMP/MP20/Claudin	tight	junction
DUF3112	PF11309.3	gi|379005140|ref|YP_005260812.1|	-	1.4	8.6	9.1	3.4	7.4	0.6	2.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3112)
DUF4231	PF14015.1	gi|379005140|ref|YP_005260812.1|	-	7.7	6.5	12.7	7.2	6.6	1.2	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
eIF-1a	PF01176.14	gi|379005141|ref|YP_005260813.1|	-	7.7e-27	92.5	0.6	9.2e-27	92.2	0.4	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
HupF_HypC	PF01455.13	gi|379005141|ref|YP_005260813.1|	-	0.091	12.7	0.1	0.17	11.8	0.0	1.4	1	0	0	1	1	1	0	HupF/HypC	family
DUF4065	PF13274.1	gi|379005143|ref|YP_005260815.1|	-	1.6e-10	41.6	0.0	3e-10	40.7	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF4065)
TrmB	PF01978.14	gi|379005143|ref|YP_005260815.1|	-	0.017	14.8	0.0	0.049	13.3	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
RHH_1	PF01402.16	gi|379005143|ref|YP_005260815.1|	-	0.1	12.5	0.1	0.28	11.1	0.0	1.8	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
OrfB_Zn_ribbon	PF07282.6	gi|379005144|ref|YP_005260816.1|	-	1.1e-09	37.8	0.0	2e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Prok-RING_1	PF14446.1	gi|379005144|ref|YP_005260816.1|	-	0.014	15.1	0.5	0.021	14.5	0.4	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
DZR	PF12773.2	gi|379005144|ref|YP_005260816.1|	-	0.016	14.9	0.3	0.029	14.1	0.2	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|379005144|ref|YP_005260816.1|	-	0.037	13.8	0.3	0.062	13.1	0.2	1.3	1	0	0	1	1	1	0	zinc-ribbons
Auto_anti-p27	PF06677.7	gi|379005144|ref|YP_005260816.1|	-	0.04	13.6	3.2	0.13	12.0	2.3	1.7	1	1	0	1	1	1	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF1272	PF06906.6	gi|379005144|ref|YP_005260816.1|	-	0.044	13.6	1.9	0.13	12.1	0.1	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
BCL9	PF11502.3	gi|379005144|ref|YP_005260816.1|	-	0.058	12.9	0.1	0.1	12.1	0.0	1.3	1	0	0	1	1	1	0	B-cell	lymphoma	9	protein
HypA	PF01155.14	gi|379005144|ref|YP_005260816.1|	-	0.11	12.1	0.1	0.23	11.1	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-RING_3	PF14369.1	gi|379005144|ref|YP_005260816.1|	-	0.12	12.4	0.2	2.4	8.2	0.0	2.4	2	0	0	2	2	2	0	zinc-finger
YdjO	PF14169.1	gi|379005144|ref|YP_005260816.1|	-	0.26	10.7	1.3	0.86	9.0	0.2	2.1	1	1	1	2	2	2	0	Cold-inducible	protein	YdjO
zf-NADH-PPase	PF09297.6	gi|379005144|ref|YP_005260816.1|	-	1.2	8.7	4.4	3.9	7.0	3.1	1.8	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
MerC	PF03203.9	gi|379005148|ref|YP_005260820.1|	-	9.8	6.5	11.2	11	6.4	6.8	1.7	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
Radical_SAM	PF04055.16	gi|379005149|ref|YP_005260821.1|	-	3.6e-11	43.5	0.0	7.6e-11	42.4	0.0	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.6	gi|379005149|ref|YP_005260821.1|	-	2.5e-05	23.9	3.1	0.12	11.9	0.0	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
DUF59	PF01883.14	gi|379005149|ref|YP_005260821.1|	-	0.055	13.4	1.1	5.4	7.0	0.1	2.8	2	1	1	3	3	3	0	Domain	of	unknown	function	DUF59
KaiC	PF06745.8	gi|379005150|ref|YP_005260822.1|	-	4.4e-17	61.9	0.0	6.4e-17	61.4	0.0	1.3	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005150|ref|YP_005260822.1|	-	1.9e-11	43.7	0.0	3.1e-11	43.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|379005150|ref|YP_005260822.1|	-	4.7e-06	26.1	0.0	8.1e-06	25.3	0.0	1.3	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Sigma54_activat	PF00158.21	gi|379005150|ref|YP_005260822.1|	-	0.0019	17.7	0.0	0.0034	16.8	0.0	1.3	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|379005150|ref|YP_005260822.1|	-	0.0052	16.3	0.0	0.0096	15.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|379005150|ref|YP_005260822.1|	-	0.013	14.3	0.0	0.095	11.5	0.0	2.0	2	0	0	2	2	2	0	DnaB-like	helicase	C	terminal	domain
UPF0079	PF02367.12	gi|379005150|ref|YP_005260822.1|	-	0.02	14.4	0.0	0.059	13.0	0.0	1.7	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Elong_Iki1	PF10483.4	gi|379005150|ref|YP_005260822.1|	-	0.023	14.0	0.0	0.032	13.6	0.0	1.2	1	0	0	1	1	1	0	Elongator	subunit	Iki1
SRP54	PF00448.17	gi|379005150|ref|YP_005260822.1|	-	0.028	13.8	0.0	0.049	13.0	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|379005150|ref|YP_005260822.1|	-	0.036	14.2	0.0	0.15	12.1	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
IGR	PF09597.5	gi|379005150|ref|YP_005260822.1|	-	0.057	13.3	0.1	0.12	12.2	0.1	1.5	1	0	0	1	1	1	0	IGR	protein	motif
CbiA	PF01656.18	gi|379005150|ref|YP_005260822.1|	-	0.058	12.7	0.1	0.091	12.1	0.0	1.6	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|379005150|ref|YP_005260822.1|	-	0.062	14.1	0.1	0.21	12.4	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379005150|ref|YP_005260822.1|	-	0.089	12.4	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Metallophos_2	PF12850.2	gi|379005152|ref|YP_005260824.1|	-	2.9e-14	53.2	0.0	3.4e-14	52.9	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|379005152|ref|YP_005260824.1|	-	2.7e-11	43.1	2.3	1.5e-10	40.6	1.5	2.1	1	1	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|379005152|ref|YP_005260824.1|	-	2.6e-07	30.2	0.0	3.6e-07	29.7	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
ELFV_dehydrog_N	PF02812.13	gi|379005153|ref|YP_005260825.1|	-	0.17	11.4	0.0	0.35	10.4	0.0	1.4	1	0	0	1	1	1	0	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
DUF3017	PF11222.3	gi|379005154|ref|YP_005260826.1|	-	0.046	13.5	0.4	0.046	13.5	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3017)
Metallophos_2	PF12850.2	gi|379005155|ref|YP_005260827.1|	-	1.3e-16	60.8	0.0	1.6e-16	60.5	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|379005155|ref|YP_005260827.1|	-	3.9e-13	49.1	0.8	1.1e-12	47.6	0.6	1.7	1	1	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|379005155|ref|YP_005260827.1|	-	7.9e-11	41.7	0.0	1e-10	41.3	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Mst1_SARAH	PF11629.3	gi|379005155|ref|YP_005260827.1|	-	0.042	13.6	0.3	8.7	6.2	0.0	2.4	2	0	0	2	2	2	0	C	terminal	SARAH	domain	of	Mst1
Lipase_GDSL_2	PF13472.1	gi|379005155|ref|YP_005260827.1|	-	0.11	12.5	0.2	1.7	8.7	0.1	2.1	1	1	1	2	2	2	0	GDSL-like	Lipase/Acylhydrolase	family
KaiC	PF06745.8	gi|379005156|ref|YP_005260828.1|	-	1e-17	64.0	0.0	1.4e-17	63.6	0.0	1.2	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005156|ref|YP_005260828.1|	-	4e-09	36.1	0.0	6.9e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|379005156|ref|YP_005260828.1|	-	3.8e-06	26.4	0.0	7e-06	25.5	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Elong_Iki1	PF10483.4	gi|379005156|ref|YP_005260828.1|	-	0.001	18.5	0.0	0.0013	18.1	0.0	1.1	1	0	0	1	1	1	1	Elongator	subunit	Iki1
Sigma54_activat	PF00158.21	gi|379005156|ref|YP_005260828.1|	-	0.001	18.5	0.0	0.0018	17.7	0.0	1.3	1	0	0	1	1	1	1	Sigma-54	interaction	domain
AAA_30	PF13604.1	gi|379005156|ref|YP_005260828.1|	-	0.0033	17.0	0.0	0.0054	16.3	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|379005156|ref|YP_005260828.1|	-	0.0054	15.6	0.0	0.039	12.8	0.0	2.0	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
UPF0079	PF02367.12	gi|379005156|ref|YP_005260828.1|	-	0.0077	15.8	0.0	0.018	14.6	0.0	1.6	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
IGR	PF09597.5	gi|379005156|ref|YP_005260828.1|	-	0.011	15.6	0.1	0.023	14.5	0.1	1.5	1	0	0	1	1	1	0	IGR	protein	motif
CbiA	PF01656.18	gi|379005156|ref|YP_005260828.1|	-	0.037	13.4	0.0	0.047	13.0	0.0	1.4	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_17	PF13207.1	gi|379005156|ref|YP_005260828.1|	-	0.042	14.6	0.0	0.11	13.3	0.0	2.0	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379005156|ref|YP_005260828.1|	-	0.045	13.4	0.0	0.094	12.3	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
Zot	PF05707.7	gi|379005156|ref|YP_005260828.1|	-	0.049	13.0	0.0	0.087	12.2	0.0	1.5	1	0	0	1	1	1	0	Zonular	occludens	toxin	(Zot)
SRP54	PF00448.17	gi|379005156|ref|YP_005260828.1|	-	0.063	12.7	0.0	0.12	11.8	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.1	gi|379005156|ref|YP_005260828.1|	-	0.12	12.2	0.1	0.43	10.4	0.1	2.3	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379005156|ref|YP_005260828.1|	-	0.13	12.4	0.0	0.55	10.3	0.0	2.1	2	1	0	2	2	2	0	AAA	domain
Radical_SAM	PF04055.16	gi|379005157|ref|YP_005260829.1|	-	5.7e-11	42.8	0.0	1.1e-10	41.9	0.0	1.5	1	1	0	1	1	1	1	Radical	SAM	superfamily
DUF1848	PF08902.6	gi|379005157|ref|YP_005260829.1|	-	6.5e-07	29.1	1.6	0.0088	15.6	0.0	2.8	2	1	0	2	2	2	2	Domain	of	unknown	function	(DUF1848)
Rhomboid	PF01694.17	gi|379005158|ref|YP_005260830.1|	-	1.1e-33	116.3	16.7	1.8e-33	115.5	11.6	1.3	1	0	0	1	1	1	1	Rhomboid	family
DUF1751	PF08551.5	gi|379005158|ref|YP_005260830.1|	-	0.0012	19.1	0.2	0.0012	19.1	0.2	2.5	3	0	0	3	3	3	1	Eukaryotic	integral	membrane	protein	(DUF1751)
DUF4389	PF14333.1	gi|379005158|ref|YP_005260830.1|	-	1.2	8.9	8.1	0.34	10.6	2.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4389)
HTH_24	PF13412.1	gi|379005159|ref|YP_005260831.1|	-	6.3e-07	28.6	0.0	2.2e-06	26.9	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379005159|ref|YP_005260831.1|	-	4.5e-05	23.0	0.0	7.4e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
LexA_DNA_bind	PF01726.11	gi|379005159|ref|YP_005260831.1|	-	0.0019	17.7	0.0	0.0029	17.1	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_34	PF13601.1	gi|379005159|ref|YP_005260831.1|	-	0.007	16.3	0.0	0.015	15.2	0.0	1.6	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|379005159|ref|YP_005260831.1|	-	0.016	14.9	0.0	0.031	13.9	0.0	1.5	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.1	gi|379005159|ref|YP_005260831.1|	-	0.028	14.2	0.0	0.044	13.6	0.0	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix
DUF3116	PF11313.3	gi|379005159|ref|YP_005260831.1|	-	0.074	12.6	0.4	0.12	11.9	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3116)
Ribosomal_S25	PF03297.10	gi|379005159|ref|YP_005260831.1|	-	0.074	13.0	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	S25	ribosomal	protein
NfeD	PF01957.13	gi|379005160|ref|YP_005260832.1|	-	1.3e-09	38.3	1.1	1.5e-09	38.1	0.8	1.0	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
IncA	PF04156.9	gi|379005160|ref|YP_005260832.1|	-	0.0024	17.5	2.7	0.0026	17.4	1.9	1.0	1	0	0	1	1	1	1	IncA	protein
KOW	PF00467.24	gi|379005160|ref|YP_005260832.1|	-	0.058	13.1	1.4	2.1	8.1	0.0	2.4	2	0	0	2	2	2	0	KOW	motif
Methyltransf_26	PF13659.1	gi|379005161|ref|YP_005260833.1|	-	8.4e-05	22.5	0.1	0.00016	21.6	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379005161|ref|YP_005260833.1|	-	0.00042	20.8	0.0	0.00077	20.0	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379005161|ref|YP_005260833.1|	-	0.012	15.2	0.0	0.018	14.7	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|379005161|ref|YP_005260833.1|	-	0.012	14.9	0.2	0.018	14.3	0.1	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.8	gi|379005161|ref|YP_005260833.1|	-	0.022	13.9	0.0	0.032	13.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_25	PF13649.1	gi|379005161|ref|YP_005260833.1|	-	0.028	14.7	0.0	0.048	14.0	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379005161|ref|YP_005260833.1|	-	0.062	12.8	0.0	0.16	11.5	0.0	1.6	2	0	0	2	2	2	0	Methyltransferase	domain
MetW	PF07021.7	gi|379005161|ref|YP_005260833.1|	-	0.09	12.1	0.0	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
Methyltransf_11	PF08241.7	gi|379005161|ref|YP_005260833.1|	-	0.11	12.9	0.0	0.17	12.4	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Dimeth_Pyl	PF09505.5	gi|379005162|ref|YP_005260834.1|	-	0.094	10.9	0.0	0.12	10.6	0.0	1.1	1	0	0	1	1	1	0	Dimethylamine	methyltransferase	(Dimeth_PyL)
DUF204	PF02659.10	gi|379005162|ref|YP_005260834.1|	-	0.58	10.3	6.4	0.57	10.3	1.6	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF
tRNA-synt_1	PF00133.17	gi|379005163|ref|YP_005260835.1|	-	3.2e-60	203.8	0.0	1.6e-50	171.7	0.0	2.9	3	1	0	3	3	3	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|379005163|ref|YP_005260835.1|	-	8.9e-31	106.9	0.1	2.6e-13	49.3	0.1	3.3	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|379005163|ref|YP_005260835.1|	-	1e-16	61.0	0.0	2.4e-16	59.8	0.0	1.6	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.1	gi|379005163|ref|YP_005260835.1|	-	6.9e-11	41.7	0.0	1.3e-10	40.8	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|379005163|ref|YP_005260835.1|	-	1.2e-09	37.7	0.0	6.9e-06	25.3	0.0	2.5	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1f	PF01921.13	gi|379005163|ref|YP_005260835.1|	-	0.001	17.7	0.0	0.021	13.5	0.0	2.2	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(K)
PI3Ka	PF00613.15	gi|379005163|ref|YP_005260835.1|	-	0.053	12.6	0.3	1.5	7.9	0.1	2.3	2	0	0	2	2	2	0	Phosphoinositide	3-kinase	family,	accessory	domain	(PIK	domain)
tRNA-synt_1d	PF00750.14	gi|379005163|ref|YP_005260835.1|	-	0.079	11.7	0.1	0.17	10.6	0.1	1.5	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(R)
Topoisom_bac	PF01131.15	gi|379005164|ref|YP_005260836.1|	-	3.7e-93	312.5	0.1	5.7e-93	311.9	0.0	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|379005164|ref|YP_005260836.1|	-	6.5e-18	64.5	0.0	2.1e-17	62.8	0.0	2.0	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.24	gi|379005164|ref|YP_005260836.1|	-	4.1e-16	58.9	0.0	1.1e-15	57.5	0.0	1.7	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|379005164|ref|YP_005260836.1|	-	9.6e-07	28.5	0.0	0.077	12.8	0.0	3.7	3	0	0	3	3	3	2	Helicase	conserved	C-terminal	domain
AAA_25	PF13481.1	gi|379005164|ref|YP_005260836.1|	-	2.4e-06	27.0	0.2	7.4e-06	25.5	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
ResIII	PF04851.10	gi|379005164|ref|YP_005260836.1|	-	3.9e-05	23.5	0.0	7.5e-05	22.6	0.0	1.4	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_19	PF13245.1	gi|379005164|ref|YP_005260836.1|	-	0.00011	21.8	1.9	0.00023	20.8	0.3	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|379005164|ref|YP_005260836.1|	-	0.011	15.3	0.1	0.029	13.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
SecA_DEAD	PF07517.9	gi|379005164|ref|YP_005260836.1|	-	0.031	13.5	0.0	0.098	11.9	0.0	1.7	1	1	0	1	1	1	0	SecA	DEAD-like	domain
SRP54	PF00448.17	gi|379005164|ref|YP_005260836.1|	-	0.034	13.5	0.1	0.076	12.4	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_10	PF12846.2	gi|379005164|ref|YP_005260836.1|	-	0.043	13.2	0.0	0.12	11.7	0.0	1.8	1	0	0	1	1	1	0	AAA-like	domain
DUF87	PF01935.12	gi|379005164|ref|YP_005260836.1|	-	0.12	12.1	1.1	0.2	11.4	0.2	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_23	PF13476.1	gi|379005164|ref|YP_005260836.1|	-	0.29	11.4	0.0	1.9	8.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Macro	PF01661.16	gi|379005166|ref|YP_005260838.1|	-	7.1e-36	122.6	0.0	1e-35	122.1	0.0	1.2	1	0	0	1	1	1	1	Macro	domain
PolyA_pol_RNAbd	PF12627.2	gi|379005166|ref|YP_005260838.1|	-	0.042	13.4	0.2	3.6	7.2	0.0	2.4	2	0	0	2	2	2	0	Probable	RNA	and	SrmB-	binding	site	of	polymerase	A
Radical_SAM	PF04055.16	gi|379005167|ref|YP_005260839.1|	-	2.1e-14	54.0	0.0	4.6e-14	52.9	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|379005167|ref|YP_005260839.1|	-	2.1e-14	53.3	0.1	6e-14	51.9	0.1	1.7	1	0	0	1	1	1	1	B12	binding	domain
DNA_pol_B	PF00136.16	gi|379005168|ref|YP_005260840.1|	-	7.7e-06	24.9	0.0	0.024	13.4	0.0	2.2	2	0	0	2	2	2	2	DNA	polymerase	family	B
Amidohydro_3	PF07969.6	gi|379005168|ref|YP_005260840.1|	-	0.056	12.6	0.3	0.28	10.3	0.0	1.7	1	1	0	2	2	2	0	Amidohydrolase	family
XdhC_C	PF13478.1	gi|379005170|ref|YP_005260842.1|	-	5e-25	88.3	0.9	9.1e-25	87.5	0.6	1.4	1	1	0	1	1	1	1	XdhC	Rossmann	domain
2-Hacid_dh_C	PF02826.14	gi|379005170|ref|YP_005260842.1|	-	0.0069	15.5	0.1	0.011	14.8	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HEPN	PF05168.9	gi|379005171|ref|YP_005260843.1|	-	2.1e-27	95.3	0.5	2.6e-27	95.0	0.3	1.1	1	0	0	1	1	1	1	HEPN	domain
DUF3368	PF11848.3	gi|379005171|ref|YP_005260843.1|	-	0.057	12.9	0.0	0.68	9.5	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
DUF2528	PF10800.3	gi|379005171|ref|YP_005260843.1|	-	0.097	13.0	0.0	0.18	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2528)
NTP_transf_2	PF01909.18	gi|379005172|ref|YP_005260844.1|	-	6e-13	48.9	0.1	7.6e-13	48.6	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379005172|ref|YP_005260844.1|	-	0.1	12.1	0.0	3.4	7.2	0.0	2.1	1	1	1	2	2	2	0	Putative	nucleotidyltransferase	DUF294
DNA_pol_B_palm	PF14792.1	gi|379005172|ref|YP_005260844.1|	-	0.14	12.2	0.0	0.14	12.1	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
Rieske	PF00355.21	gi|379005173|ref|YP_005260845.1|	-	8e-12	44.5	0.1	9.6e-12	44.3	0.1	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
PIN	PF01850.16	gi|379005174|ref|YP_005260846.1|	-	2.8e-10	40.5	1.2	3.6e-10	40.2	0.7	1.2	1	1	0	1	1	1	1	PIN	domain
PIN_3	PF13470.1	gi|379005174|ref|YP_005260846.1|	-	0.014	16.0	0.6	0.023	15.3	0.4	1.5	1	1	0	1	1	1	0	PIN	domain
BacteriocIIc_cy	PF12173.3	gi|379005174|ref|YP_005260846.1|	-	0.05	13.6	0.0	0.08	12.9	0.0	1.3	1	0	0	1	1	1	0	Bacteriocin	class	IIc	cyclic	gassericin	A-like
Pro_CA	PF00484.14	gi|379005176|ref|YP_005260848.1|	-	8.8e-08	32.2	0.1	9.5e-08	32.1	0.1	1.1	1	0	0	1	1	1	1	Carbonic	anhydrase
Phosphonate-bd	PF12974.2	gi|379005177|ref|YP_005260849.1|	-	5e-39	134.1	0.0	6.3e-39	133.8	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter,	phosphonate,	periplasmic	substrate-binding	protein
SBP_bac_3	PF00497.15	gi|379005177|ref|YP_005260849.1|	-	2.9e-05	23.4	0.0	0.0015	17.7	0.0	2.2	1	1	1	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.6	gi|379005177|ref|YP_005260849.1|	-	0.0039	16.8	0.0	0.042	13.4	0.0	2.3	1	1	0	1	1	1	1	NMT1/THI5	like
Transferrin	PF00405.12	gi|379005177|ref|YP_005260849.1|	-	0.0083	15.0	0.0	0.019	13.8	0.0	1.4	1	1	0	1	1	1	1	Transferrin
ABC_tran	PF00005.22	gi|379005178|ref|YP_005260850.1|	-	2.8e-30	105.3	0.0	4.9e-30	104.6	0.0	1.4	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005178|ref|YP_005260850.1|	-	7e-08	32.7	0.0	0.002	18.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|379005178|ref|YP_005260850.1|	-	1.9e-05	24.8	0.2	7.1e-05	22.9	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379005178|ref|YP_005260850.1|	-	0.00026	20.4	0.1	0.00044	19.7	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|379005178|ref|YP_005260850.1|	-	0.00084	18.7	0.1	0.005	16.2	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|379005178|ref|YP_005260850.1|	-	0.0023	17.6	0.0	0.0032	17.1	0.0	1.2	1	0	0	1	1	1	1	NACHT	domain
Miro	PF08477.8	gi|379005178|ref|YP_005260850.1|	-	0.0027	18.2	0.0	0.0048	17.3	0.0	1.5	1	1	0	1	1	1	1	Miro-like	protein
DUF258	PF03193.11	gi|379005178|ref|YP_005260850.1|	-	0.0071	15.5	0.0	0.012	14.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|379005178|ref|YP_005260850.1|	-	0.0075	15.8	1.6	0.013	15.0	1.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379005178|ref|YP_005260850.1|	-	0.0086	15.8	0.3	0.021	14.5	0.2	1.7	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_18	PF13238.1	gi|379005178|ref|YP_005260850.1|	-	0.009	16.3	0.1	0.016	15.5	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379005178|ref|YP_005260850.1|	-	0.0093	16.7	0.3	0.012	16.4	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|379005178|ref|YP_005260850.1|	-	0.011	15.4	0.1	0.021	14.5	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_23	PF13476.1	gi|379005178|ref|YP_005260850.1|	-	0.011	16.0	0.0	0.012	15.9	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.18	gi|379005178|ref|YP_005260850.1|	-	0.015	14.7	0.7	0.054	12.9	0.3	1.8	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PduV-EutP	PF10662.4	gi|379005178|ref|YP_005260850.1|	-	0.018	14.5	0.7	0.045	13.2	0.2	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_24	PF13479.1	gi|379005178|ref|YP_005260850.1|	-	0.019	14.5	0.2	0.035	13.7	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|379005178|ref|YP_005260850.1|	-	0.021	14.7	0.1	0.15	12.0	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
SMC_N	PF02463.14	gi|379005178|ref|YP_005260850.1|	-	0.026	13.7	0.3	2.5	7.2	0.0	2.1	1	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
NTPase_1	PF03266.10	gi|379005178|ref|YP_005260850.1|	-	0.027	14.1	0.1	0.068	12.8	0.0	1.7	2	0	0	2	2	2	0	NTPase
Pox_A32	PF04665.7	gi|379005178|ref|YP_005260850.1|	-	0.031	13.5	0.1	0.052	12.8	0.1	1.3	1	0	0	1	1	1	0	Poxvirus	A32	protein
AAA_16	PF13191.1	gi|379005178|ref|YP_005260850.1|	-	0.032	14.2	0.2	0.043	13.8	0.2	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
T2SE	PF00437.15	gi|379005178|ref|YP_005260850.1|	-	0.061	12.2	0.1	0.12	11.2	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
UPF0079	PF02367.12	gi|379005178|ref|YP_005260850.1|	-	0.065	12.8	0.3	0.11	12.0	0.2	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_28	PF13521.1	gi|379005178|ref|YP_005260850.1|	-	0.081	12.8	0.1	0.12	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
cobW	PF02492.14	gi|379005178|ref|YP_005260850.1|	-	0.085	12.2	0.3	0.26	10.7	0.1	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF87	PF01935.12	gi|379005178|ref|YP_005260850.1|	-	0.1	12.4	0.3	0.21	11.3	0.2	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
Mg_chelatase	PF01078.16	gi|379005178|ref|YP_005260850.1|	-	0.11	11.6	0.1	0.18	10.9	0.1	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_10	PF12846.2	gi|379005178|ref|YP_005260850.1|	-	0.14	11.6	0.9	0.16	11.3	0.6	1.4	1	1	0	1	1	1	0	AAA-like	domain
PRK	PF00485.13	gi|379005178|ref|YP_005260850.1|	-	0.16	11.5	0.0	0.25	10.8	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
Gtr1_RagA	PF04670.7	gi|379005178|ref|YP_005260850.1|	-	0.19	10.8	0.2	1.4	7.9	0.1	2.1	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
BPD_transp_1	PF00528.17	gi|379005179|ref|YP_005260851.1|	-	6.3e-12	45.3	13.7	6.3e-12	45.3	9.5	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3975	PF13126.1	gi|379005179|ref|YP_005260851.1|	-	0.8	9.8	5.1	1.8	8.7	0.1	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3975)
Rieske	PF00355.21	gi|379005182|ref|YP_005260854.1|	-	5.3e-11	41.9	0.0	5.9e-11	41.7	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|379005182|ref|YP_005260854.1|	-	2.1e-10	40.2	0.0	2.8e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Pyr_redox_2	PF07992.9	gi|379005184|ref|YP_005260856.1|	-	2e-12	47.4	0.0	3.3e-12	46.7	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379005184|ref|YP_005260856.1|	-	3.8e-06	27.2	3.6	0.01	16.2	0.7	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379005184|ref|YP_005260856.1|	-	4.9e-05	23.1	0.2	0.011	15.5	0.0	2.6	2	0	0	2	2	2	1	FAD-NAD(P)-binding
DAO	PF01266.19	gi|379005184|ref|YP_005260856.1|	-	0.00068	18.6	1.9	0.0076	15.1	0.1	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379005184|ref|YP_005260856.1|	-	0.0018	17.2	0.0	0.0051	15.7	0.0	1.9	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|379005184|ref|YP_005260856.1|	-	0.0029	16.3	0.1	0.0053	15.4	0.1	1.4	1	0	0	1	1	1	1	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|379005184|ref|YP_005260856.1|	-	0.0037	17.2	0.0	0.0098	15.9	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379005184|ref|YP_005260856.1|	-	0.0049	16.9	2.8	0.51	10.3	0.6	2.7	1	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_7	PF13241.1	gi|379005184|ref|YP_005260856.1|	-	0.015	15.5	0.4	0.041	14.1	0.1	1.9	2	0	0	2	2	2	0	Putative	NAD(P)-binding
K_oxygenase	PF13434.1	gi|379005184|ref|YP_005260856.1|	-	0.04	12.8	0.1	0.093	11.6	0.0	1.6	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.19	gi|379005184|ref|YP_005260856.1|	-	0.049	12.4	0.1	0.073	11.9	0.1	1.3	1	0	0	1	1	1	0	FAD	binding	domain
FIST	PF08495.5	gi|379005184|ref|YP_005260856.1|	-	0.077	12.1	0.0	0.38	9.8	0.0	2.2	2	0	0	2	2	2	0	FIST	N	domain
TrkA_N	PF02254.13	gi|379005184|ref|YP_005260856.1|	-	0.081	12.9	1.1	0.17	11.9	0.1	2.0	3	0	0	3	3	3	0	TrkA-N	domain
Shikimate_DH	PF01488.15	gi|379005184|ref|YP_005260856.1|	-	0.1	12.7	0.7	0.19	11.8	0.5	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Aldo_ket_red	PF00248.16	gi|379005185|ref|YP_005260857.1|	-	2.6e-38	131.4	0.0	6.2e-38	130.2	0.0	1.5	1	1	0	1	1	1	1	Aldo/keto	reductase	family
Rhomboid	PF01694.17	gi|379005186|ref|YP_005260858.1|	-	1.6e-28	99.5	7.8	1.6e-28	99.5	5.4	2.3	4	0	0	4	4	4	1	Rhomboid	family
DUF1751	PF08551.5	gi|379005186|ref|YP_005260858.1|	-	0.034	14.4	0.7	0.087	13.1	0.0	2.0	2	0	0	2	2	2	0	Eukaryotic	integral	membrane	protein	(DUF1751)
PaREP1	PF05942.6	gi|379005187|ref|YP_005260859.1|	-	1.5e-30	105.3	0.2	1.8e-30	105.1	0.1	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
ATP-synt_ab	PF00006.20	gi|379005188|ref|YP_005260860.1|	-	8.1e-61	205.2	0.0	1.1e-60	204.8	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|379005188|ref|YP_005260860.1|	-	2.6e-09	37.5	0.0	4.5e-09	36.7	0.0	1.3	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|379005188|ref|YP_005260860.1|	-	2.4e-07	30.8	2.5	2.4e-07	30.8	1.7	1.7	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
NAD_binding_2	PF03446.10	gi|379005189|ref|YP_005260861.1|	-	6.2e-51	172.4	0.2	1e-50	171.7	0.1	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|379005189|ref|YP_005260861.1|	-	7.1e-29	100.3	0.6	1e-28	99.8	0.4	1.3	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|379005189|ref|YP_005260861.1|	-	5e-06	25.7	0.2	2e-05	23.8	0.0	1.9	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|379005189|ref|YP_005260861.1|	-	6.3e-06	26.3	0.0	1.3e-05	25.3	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|379005189|ref|YP_005260861.1|	-	3.1e-05	24.3	0.1	0.00019	21.7	0.0	2.3	1	1	1	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
3HCDH_N	PF02737.13	gi|379005189|ref|YP_005260861.1|	-	0.00067	19.3	1.9	0.012	15.3	0.2	2.6	2	1	1	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|379005189|ref|YP_005260861.1|	-	0.00094	18.6	0.0	0.0017	17.8	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
GFO_IDH_MocA	PF01408.17	gi|379005189|ref|YP_005260861.1|	-	0.0017	18.8	0.0	0.0038	17.7	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
DapB_N	PF01113.15	gi|379005189|ref|YP_005260861.1|	-	0.0099	15.8	0.1	0.022	14.6	0.0	1.6	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
IlvN	PF07991.7	gi|379005189|ref|YP_005260861.1|	-	0.016	14.5	0.2	0.086	12.2	0.0	1.9	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Rossmann-like	PF10727.4	gi|379005189|ref|YP_005260861.1|	-	0.083	12.6	1.0	0.21	11.3	0.1	1.9	2	0	0	2	2	2	0	Rossmann-like	domain
BRI3BP	PF14965.1	gi|379005189|ref|YP_005260861.1|	-	0.093	12.0	0.1	0.14	11.4	0.0	1.3	1	0	0	1	1	1	0	Negative	regulator	of	p53/TP53
Acetyltransf_1	PF00583.19	gi|379005191|ref|YP_005260863.1|	-	2.7e-13	49.7	0.1	6.6e-13	48.5	0.1	1.6	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
FR47	PF08445.5	gi|379005191|ref|YP_005260863.1|	-	2.7e-08	33.4	0.1	4.1e-08	32.8	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_10	PF13673.1	gi|379005191|ref|YP_005260863.1|	-	9e-08	32.2	0.0	1.8e-07	31.2	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379005191|ref|YP_005260863.1|	-	3.8e-06	26.9	0.0	8.1e-06	25.9	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|379005191|ref|YP_005260863.1|	-	0.00065	19.5	0.4	0.0013	18.5	0.1	1.6	2	0	0	2	2	2	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.1	gi|379005191|ref|YP_005260863.1|	-	0.00065	19.8	0.0	0.0021	18.2	0.0	1.9	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|379005191|ref|YP_005260863.1|	-	0.0014	18.4	0.1	0.0037	17.1	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|379005191|ref|YP_005260863.1|	-	0.0029	17.2	0.0	0.004	16.7	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|379005191|ref|YP_005260863.1|	-	0.0046	16.8	0.0	0.008	16.0	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|379005191|ref|YP_005260863.1|	-	0.016	15.1	0.3	0.026	14.4	0.2	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PseudoU_synth_1	PF01416.15	gi|379005192|ref|YP_005260864.1|	-	1e-21	77.3	0.0	1.7e-14	54.0	0.0	3.1	2	1	0	2	2	2	2	tRNA	pseudouridine	synthase
Molydop_binding	PF01568.16	gi|379005194|ref|YP_005260866.1|	-	0.0011	18.7	0.4	0.0019	17.9	0.3	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
TP_methylase	PF00590.15	gi|379005195|ref|YP_005260867.1|	-	2.2e-27	96.1	0.8	2.8e-27	95.7	0.5	1.2	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
P22_Cro	PF14549.1	gi|379005197|ref|YP_005260869.1|	-	0.0018	17.9	0.0	0.0033	17.1	0.0	1.3	1	0	0	1	1	1	1	DNA-binding	transcriptional	regulator	Cro
SOR_SNZ	PF01680.12	gi|379005198|ref|YP_005260870.1|	-	4.8e-89	297.4	1.3	7.2e-89	296.8	0.9	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|379005198|ref|YP_005260870.1|	-	1.2e-07	31.1	1.7	1.9e-06	27.1	0.4	2.4	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.16	gi|379005198|ref|YP_005260870.1|	-	0.0002	20.6	1.6	1.1	8.4	0.0	3.2	2	1	1	3	3	3	2	Histidine	biosynthesis	protein
Dus	PF01207.12	gi|379005198|ref|YP_005260870.1|	-	0.00039	19.3	1.5	0.13	11.0	0.0	3.2	3	0	0	3	3	3	2	Dihydrouridine	synthase	(Dus)
IGPS	PF00218.16	gi|379005198|ref|YP_005260870.1|	-	0.0011	18.1	0.0	0.0089	15.1	0.0	2.1	2	0	0	2	2	2	1	Indole-3-glycerol	phosphate	synthase
NMO	PF03060.10	gi|379005198|ref|YP_005260870.1|	-	0.0012	18.0	5.1	0.002	17.3	0.2	2.2	2	0	0	2	2	2	1	Nitronate	monooxygenase
NanE	PF04131.9	gi|379005198|ref|YP_005260870.1|	-	0.0031	16.4	0.2	0.12	11.3	0.0	2.5	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
OMPdecase	PF00215.19	gi|379005198|ref|YP_005260870.1|	-	0.026	13.9	0.4	0.55	9.5	0.0	2.5	2	1	0	3	3	3	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
Trp_syntA	PF00290.15	gi|379005198|ref|YP_005260870.1|	-	0.055	12.0	0.1	0.29	9.6	0.0	2.1	2	1	0	2	2	2	0	Tryptophan	synthase	alpha	chain
FMN_dh	PF01070.13	gi|379005198|ref|YP_005260870.1|	-	0.69	8.6	3.8	0.31	9.8	0.1	2.0	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
SNO	PF01174.14	gi|379005199|ref|YP_005260871.1|	-	1.2e-46	158.7	0.0	1.4e-46	158.5	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|379005199|ref|YP_005260871.1|	-	9.9e-07	28.4	0.0	1.3e-06	28.0	0.0	1.4	1	1	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|379005199|ref|YP_005260871.1|	-	9.9e-06	25.1	0.0	3.3e-05	23.4	0.0	1.7	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_S51	PF03575.12	gi|379005199|ref|YP_005260871.1|	-	0.0019	17.9	0.0	0.0026	17.4	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
DJ-1_PfpI	PF01965.19	gi|379005199|ref|YP_005260871.1|	-	0.002	17.5	0.0	0.0033	16.9	0.0	1.5	1	0	0	1	1	1	1	DJ-1/PfpI	family
DUF4066	PF13278.1	gi|379005199|ref|YP_005260871.1|	-	0.022	14.0	0.1	0.036	13.3	0.1	1.3	1	0	0	1	1	1	0	Putative	amidotransferase
Thioredoxin_3	PF13192.1	gi|379005199|ref|YP_005260871.1|	-	0.075	12.8	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Thioredoxin	domain
KaiC	PF06745.8	gi|379005200|ref|YP_005260872.1|	-	2.3e-46	157.7	0.2	9.3e-45	152.4	0.1	2.1	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005200|ref|YP_005260872.1|	-	2.9e-10	39.8	0.0	6.7e-10	38.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379005200|ref|YP_005260872.1|	-	2.6e-06	27.5	0.0	3.8e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
IstB_IS21	PF01695.12	gi|379005200|ref|YP_005260872.1|	-	9.2e-06	25.1	0.0	3.7e-05	23.2	0.0	2.0	2	1	0	2	2	2	1	IstB-like	ATP	binding	protein
Rad51	PF08423.6	gi|379005200|ref|YP_005260872.1|	-	1.7e-05	23.8	0.0	8.6e-05	21.5	0.0	1.9	2	0	0	2	2	2	1	Rad51
AAA_10	PF12846.2	gi|379005200|ref|YP_005260872.1|	-	2e-05	24.2	0.0	2.7e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	AAA-like	domain
PAXNEB	PF05625.6	gi|379005200|ref|YP_005260872.1|	-	2.5e-05	23.3	0.0	0.0018	17.2	0.0	2.1	2	0	0	2	2	2	1	PAXNEB	protein
GvpD	PF07088.6	gi|379005200|ref|YP_005260872.1|	-	3e-05	22.5	0.0	0.00012	20.6	0.0	1.8	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_22	PF13401.1	gi|379005200|ref|YP_005260872.1|	-	0.00037	20.6	0.1	0.0039	17.3	0.0	2.4	3	0	0	3	3	3	1	AAA	domain
DUF2075	PF09848.4	gi|379005200|ref|YP_005260872.1|	-	0.00048	19.2	0.0	0.00074	18.5	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|379005200|ref|YP_005260872.1|	-	0.00058	19.5	0.0	0.0026	17.4	0.0	2.1	3	0	0	3	3	2	1	Part	of	AAA	domain
RecA	PF00154.16	gi|379005200|ref|YP_005260872.1|	-	0.00093	18.3	0.0	0.0015	17.6	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
DnaB_C	PF03796.10	gi|379005200|ref|YP_005260872.1|	-	0.0013	17.6	0.0	0.004	16.0	0.0	1.8	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
DAP3	PF10236.4	gi|379005200|ref|YP_005260872.1|	-	0.0015	17.5	0.0	0.0026	16.7	0.0	1.3	1	0	0	1	1	1	1	Mitochondrial	ribosomal	death-associated	protein	3
Arch_ATPase	PF01637.13	gi|379005200|ref|YP_005260872.1|	-	0.0046	16.6	0.0	0.0067	16.1	0.0	1.3	1	0	0	1	1	1	1	Archaeal	ATPase
AAA_5	PF07728.9	gi|379005200|ref|YP_005260872.1|	-	0.0062	16.2	0.0	0.02	14.6	0.0	1.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.20	gi|379005200|ref|YP_005260872.1|	-	0.0067	15.9	0.0	0.011	15.1	0.0	1.4	1	1	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_28	PF13521.1	gi|379005200|ref|YP_005260872.1|	-	0.01	15.7	0.1	0.33	10.8	0.0	2.6	2	1	1	3	3	3	0	AAA	domain
AAA_18	PF13238.1	gi|379005200|ref|YP_005260872.1|	-	0.016	15.5	0.0	0.035	14.4	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_14	PF13173.1	gi|379005200|ref|YP_005260872.1|	-	0.019	14.8	0.0	0.037	13.9	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379005200|ref|YP_005260872.1|	-	0.036	14.2	0.0	0.1	12.7	0.0	1.8	2	0	0	2	2	1	0	RNA	helicase
AAA_17	PF13207.1	gi|379005200|ref|YP_005260872.1|	-	0.04	14.7	0.0	0.15	12.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|379005200|ref|YP_005260872.1|	-	0.053	13.1	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
Sigma54_activ_2	PF14532.1	gi|379005200|ref|YP_005260872.1|	-	0.057	13.4	0.0	0.38	10.7	0.0	2.2	2	1	0	2	2	2	0	Sigma-54	interaction	domain
ArgK	PF03308.11	gi|379005200|ref|YP_005260872.1|	-	0.065	11.9	0.3	0.44	9.2	0.0	2.3	3	0	0	3	3	3	0	ArgK	protein
ABC_tran	PF00005.22	gi|379005200|ref|YP_005260872.1|	-	0.069	13.4	0.0	0.1	12.9	0.0	1.6	1	1	0	1	1	1	0	ABC	transporter
MMR_HSR1	PF01926.18	gi|379005200|ref|YP_005260872.1|	-	0.071	13.0	0.0	0.15	11.9	0.0	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
TusA	PF01206.12	gi|379005200|ref|YP_005260872.1|	-	0.1	12.2	0.0	12	5.5	0.0	2.5	2	0	0	2	2	2	0	Sulfurtransferase	TusA
NB-ARC	PF00931.17	gi|379005200|ref|YP_005260872.1|	-	0.11	11.2	0.0	3	6.6	0.0	2.3	2	0	0	2	2	2	0	NB-ARC	domain
AAA_30	PF13604.1	gi|379005200|ref|YP_005260872.1|	-	0.12	11.9	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|379005200|ref|YP_005260872.1|	-	0.12	12.0	0.1	0.41	10.3	0.0	2.0	2	1	0	2	2	2	0	NTPase
MARVEL	PF01284.18	gi|379005201|ref|YP_005260873.1|	-	0.011	15.5	2.3	0.024	14.4	1.6	1.7	1	1	0	1	1	1	0	Membrane-associating	domain
Linocin_M18	PF04454.7	gi|379005202|ref|YP_005260874.1|	-	2.4e-51	174.1	0.0	3.3e-51	173.6	0.0	1.1	1	0	0	1	1	1	1	Encapsulating	protein	for	peroxidase
Rubrerythrin	PF02915.12	gi|379005202|ref|YP_005260874.1|	-	1.1e-08	35.5	0.0	1.9e-08	34.7	0.0	1.4	1	0	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.19	gi|379005202|ref|YP_005260874.1|	-	0.023	14.4	0.0	0.056	13.2	0.0	1.7	2	0	0	2	2	2	0	Ferritin-like	domain
DUF2383	PF09537.5	gi|379005202|ref|YP_005260874.1|	-	0.03	14.5	0.2	0.068	13.4	0.1	1.6	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2383)
DUF3231	PF11553.3	gi|379005202|ref|YP_005260874.1|	-	0.04	13.4	0.0	0.067	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3231)
DUF2202	PF09968.4	gi|379005202|ref|YP_005260874.1|	-	0.081	12.5	0.0	0.14	11.8	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	domain	(DUF2202)
EHN	PF06441.7	gi|379005204|ref|YP_005260876.1|	-	0.11	12.4	0.1	0.11	12.4	0.0	1.1	1	0	0	1	1	1	0	Epoxide	hydrolase	N	terminus
2-Hacid_dh_C	PF02826.14	gi|379005206|ref|YP_005260878.1|	-	5.8e-35	120.0	0.0	7.8e-35	119.6	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|379005206|ref|YP_005260878.1|	-	1.8e-10	40.3	0.0	2.2e-10	40.0	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_10	PF13460.1	gi|379005206|ref|YP_005260878.1|	-	0.00035	20.6	0.2	0.00098	19.1	0.1	1.8	2	0	0	2	2	2	1	NADH(P)-binding
NAD_binding_2	PF03446.10	gi|379005206|ref|YP_005260878.1|	-	0.0056	16.5	0.0	0.0098	15.7	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|379005206|ref|YP_005260878.1|	-	0.0096	15.6	0.3	0.22	11.2	0.3	2.2	1	1	1	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Ald_Xan_dh_C2	PF02738.13	gi|379005206|ref|YP_005260878.1|	-	0.026	12.8	0.0	0.033	12.5	0.0	1.1	1	0	0	1	1	1	0	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Pyr_redox	PF00070.22	gi|379005206|ref|YP_005260878.1|	-	0.03	14.7	0.1	1.3	9.5	0.0	2.7	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|379005206|ref|YP_005260878.1|	-	0.031	14.1	0.0	2.1	8.1	0.0	2.2	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
ELFV_dehydrog	PF00208.16	gi|379005206|ref|YP_005260878.1|	-	0.039	13.5	0.0	0.062	12.8	0.0	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Oxidored_nitro	PF00148.14	gi|379005206|ref|YP_005260878.1|	-	0.044	12.4	0.0	0.061	11.9	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
Glyco_trans_4_4	PF13579.1	gi|379005206|ref|YP_005260878.1|	-	0.054	13.6	1.7	0.074	13.1	0.6	1.7	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
ApbA	PF02558.11	gi|379005206|ref|YP_005260878.1|	-	0.13	11.7	0.0	0.23	10.9	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|379005206|ref|YP_005260878.1|	-	0.14	11.8	0.0	0.21	11.2	0.0	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ThiF	PF00899.16	gi|379005206|ref|YP_005260878.1|	-	0.19	11.5	1.4	0.39	10.5	1.0	1.5	1	0	0	1	1	1	0	ThiF	family
Fucose_iso_C	PF02952.12	gi|379005207|ref|YP_005260879.1|	-	2.9e-06	26.8	0.0	6.6e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	L-fucose	isomerase,	C-terminal	domain
DUF3098	PF11297.3	gi|379005208|ref|YP_005260880.1|	-	0.33	10.7	4.2	0.29	10.8	0.5	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3098)
VKG_Carbox	PF05090.9	gi|379005208|ref|YP_005260880.1|	-	8.4	5.1	15.0	10	4.8	9.4	1.9	1	1	1	2	2	2	0	Vitamin	K-dependent	gamma-carboxylase
ABC2_membrane_3	PF12698.2	gi|379005210|ref|YP_005260882.1|	-	1.5e-17	63.7	8.3	2.1e-17	63.1	5.7	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|379005210|ref|YP_005260882.1|	-	4.2e-15	55.5	0.2	8.1e-15	54.6	0.2	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|379005210|ref|YP_005260882.1|	-	1.3e-11	43.9	14.9	1.6e-11	43.5	10.3	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|379005210|ref|YP_005260882.1|	-	2.6e-07	30.0	15.2	6.6e-07	28.6	8.1	2.4	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_5	PF13346.1	gi|379005210|ref|YP_005260882.1|	-	0.0061	15.8	9.5	0.12	11.6	3.8	2.6	2	1	0	2	2	2	2	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|379005211|ref|YP_005260883.1|	-	7.7e-25	87.7	0.0	1e-24	87.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005211|ref|YP_005260883.1|	-	7.1e-11	42.6	0.0	2.7e-05	24.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_23	PF13476.1	gi|379005211|ref|YP_005260883.1|	-	0.00025	21.4	0.0	0.00028	21.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379005211|ref|YP_005260883.1|	-	0.0013	18.2	0.0	0.0023	17.4	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|379005211|ref|YP_005260883.1|	-	0.0043	16.7	0.0	0.011	15.4	0.0	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|379005211|ref|YP_005260883.1|	-	0.0059	16.1	0.1	0.01	15.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|379005211|ref|YP_005260883.1|	-	0.0074	15.9	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
HHH_2	PF12826.2	gi|379005211|ref|YP_005260883.1|	-	0.014	15.2	0.0	0.38	10.6	0.0	2.5	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
AAA_17	PF13207.1	gi|379005211|ref|YP_005260883.1|	-	0.016	15.9	0.7	0.027	15.2	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
Rad17	PF03215.10	gi|379005211|ref|YP_005260883.1|	-	0.017	13.7	0.0	0.024	13.3	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
SRP54	PF00448.17	gi|379005211|ref|YP_005260883.1|	-	0.025	14.0	0.1	0.046	13.1	0.1	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.1	gi|379005211|ref|YP_005260883.1|	-	0.03	14.2	0.0	0.038	13.9	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
ArgK	PF03308.11	gi|379005211|ref|YP_005260883.1|	-	0.037	12.7	0.1	0.061	12.0	0.1	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_5	PF07728.9	gi|379005211|ref|YP_005260883.1|	-	0.05	13.3	0.0	0.099	12.3	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|379005211|ref|YP_005260883.1|	-	0.053	13.6	0.0	0.079	13.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379005211|ref|YP_005260883.1|	-	0.067	13.3	0.0	0.11	12.6	0.0	1.4	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
MobB	PF03205.9	gi|379005211|ref|YP_005260883.1|	-	0.071	12.8	0.0	0.14	11.8	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|379005211|ref|YP_005260883.1|	-	0.08	13.2	0.0	0.13	12.6	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
SMC_N	PF02463.14	gi|379005211|ref|YP_005260883.1|	-	0.13	11.5	0.2	2.9	7.0	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_28	PF13521.1	gi|379005211|ref|YP_005260883.1|	-	0.13	12.1	0.1	0.22	11.4	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
DUF3584	PF12128.3	gi|379005211|ref|YP_005260883.1|	-	0.22	8.8	0.7	0.29	8.4	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Bacteriocin_IIc	PF10439.4	gi|379005214|ref|YP_005260886.1|	-	0.046	13.8	8.3	0.046	13.8	5.7	2.2	2	0	0	2	2	2	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
UPF0444	PF15475.1	gi|379005214|ref|YP_005260886.1|	-	3.5	7.7	7.9	0.65	10.0	2.1	2.0	2	0	0	2	2	2	0	Transmembrane	protein	C12orf23,	UPF0444
DUF3951	PF13131.1	gi|379005215|ref|YP_005260887.1|	-	0.21	11.3	0.2	0.21	11.3	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3951)
PMT_2	PF13231.1	gi|379005215|ref|YP_005260887.1|	-	0.3	10.9	11.2	1.9	8.3	7.7	1.9	1	1	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
DUF2892	PF11127.3	gi|379005215|ref|YP_005260887.1|	-	5.3	6.9	6.3	2.9	7.7	0.0	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Epimerase_Csub	PF13950.1	gi|379005217|ref|YP_005260889.1|	-	0.085	12.8	0.0	0.15	12.0	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose	4-epimerase	C-term	subunit
SWIM	PF04434.12	gi|379005218|ref|YP_005260890.1|	-	0.008	15.6	6.0	0.022	14.2	4.2	1.7	1	1	0	1	1	1	1	SWIM	zinc	finger
CBM_20	PF00686.14	gi|379005218|ref|YP_005260890.1|	-	0.011	15.3	0.0	0.015	14.8	0.0	1.3	1	0	0	1	1	1	0	Starch	binding	domain
Kelch_2	PF07646.10	gi|379005218|ref|YP_005260890.1|	-	0.017	14.8	0.2	0.03	14.0	0.1	1.4	1	0	0	1	1	1	0	Kelch	motif
VitK2_biosynth	PF02621.9	gi|379005219|ref|YP_005260891.1|	-	1.2e-31	109.8	0.0	1.4e-31	109.6	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
Methyltransf_11	PF08241.7	gi|379005220|ref|YP_005260892.1|	-	6.9e-16	58.5	0.0	1e-15	58.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379005220|ref|YP_005260892.1|	-	9.2e-14	51.4	0.0	1.2e-13	51.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379005220|ref|YP_005260892.1|	-	1.6e-11	44.5	0.0	2.8e-11	43.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379005220|ref|YP_005260892.1|	-	4.9e-11	43.1	0.0	8.5e-11	42.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379005220|ref|YP_005260892.1|	-	2.2e-10	40.3	0.0	4.1e-10	39.4	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|379005220|ref|YP_005260892.1|	-	3.1e-07	29.7	0.0	4.1e-07	29.3	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|379005220|ref|YP_005260892.1|	-	0.00062	20.0	0.0	0.0011	19.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|379005220|ref|YP_005260892.1|	-	0.00091	18.6	0.0	0.0012	18.3	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_26	PF13659.1	gi|379005220|ref|YP_005260892.1|	-	0.0081	16.1	0.1	0.014	15.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|379005220|ref|YP_005260892.1|	-	0.042	12.2	0.0	0.046	12.0	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_8	PF05148.10	gi|379005220|ref|YP_005260892.1|	-	0.044	13.4	0.0	0.057	13.0	0.0	1.1	1	0	0	1	1	1	0	Hypothetical	methyltransferase
CMAS	PF02353.15	gi|379005220|ref|YP_005260892.1|	-	0.063	12.3	0.0	0.075	12.0	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Radical_SAM	PF04055.16	gi|379005221|ref|YP_005260893.1|	-	1.1e-19	71.2	0.0	7.5e-18	65.2	0.0	2.1	2	0	0	2	2	2	2	Radical	SAM	superfamily
NTP_transf_2	PF01909.18	gi|379005223|ref|YP_005260895.1|	-	8e-14	51.7	0.0	9.1e-14	51.5	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|379005223|ref|YP_005260895.1|	-	0.015	14.9	0.0	0.022	14.3	0.0	1.2	1	1	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|379005224|ref|YP_005260896.1|	-	6.8e-27	93.7	1.5	7.7e-27	93.5	1.0	1.0	1	0	0	1	1	1	1	HEPN	domain
Radical_SAM	PF04055.16	gi|379005225|ref|YP_005260897.1|	-	1e-13	51.7	0.1	2.5e-13	50.5	0.1	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
FHA	PF00498.21	gi|379005226|ref|YP_005260898.1|	-	1.9e-13	50.2	0.0	2.3e-13	50.0	0.0	1.2	1	0	0	1	1	1	1	FHA	domain
MazG	PF03819.12	gi|379005227|ref|YP_005260899.1|	-	1.1e-08	34.9	0.5	1.5e-08	34.4	0.3	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
dUTPase_2	PF08761.6	gi|379005227|ref|YP_005260899.1|	-	0.022	14.8	0.1	0.37	10.8	0.0	2.0	1	1	1	2	2	2	0	dUTPase
MazG-like	PF12643.2	gi|379005227|ref|YP_005260899.1|	-	0.1	12.5	0.4	0.2	11.6	0.3	1.7	1	1	0	1	1	1	0	MazG-like	family
DUF77	PF01910.12	gi|379005228|ref|YP_005260900.1|	-	6.2e-28	96.3	0.1	6.9e-28	96.1	0.1	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF77
THF_DHG_CYH	PF00763.18	gi|379005228|ref|YP_005260900.1|	-	0.015	15.3	0.7	0.1	12.6	0.2	1.9	1	1	1	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
DUF2508	PF10704.4	gi|379005228|ref|YP_005260900.1|	-	0.018	15.2	1.1	0.027	14.6	0.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2508)
FliD_N	PF02465.13	gi|379005232|ref|YP_005260904.1|	-	0.056	13.8	0.4	0.08	13.3	0.3	1.3	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	N-terminus
HHH_8	PF14716.1	gi|379005232|ref|YP_005260904.1|	-	0.092	12.9	0.2	0.16	12.1	0.1	1.4	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
DUF2061	PF09834.4	gi|379005232|ref|YP_005260904.1|	-	0.13	12.4	1.0	0.43	10.8	0.4	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2061)
CC	PF04942.9	gi|379005233|ref|YP_005260905.1|	-	0.2	11.5	0.0	0.2	11.5	0.0	2.7	4	0	0	4	4	4	0	CC	domain
DUF2119	PF09892.4	gi|379005234|ref|YP_005260906.1|	-	0.055	12.7	0.0	0.084	12.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2119)
TauE	PF01925.14	gi|379005234|ref|YP_005260906.1|	-	0.067	12.6	12.1	0.23	10.8	8.4	1.8	1	1	0	1	1	1	0	Sulfite	exporter	TauE/SafE
GPI2	PF06432.6	gi|379005234|ref|YP_005260906.1|	-	2.6	7.3	6.5	6.2	6.0	4.6	1.5	1	1	0	1	1	1	0	Phosphatidylinositol	N-acetylglucosaminyltransferase
Multi_Drug_Res	PF00893.14	gi|379005234|ref|YP_005260906.1|	-	2.8	8.4	9.2	13	6.3	0.2	3.0	3	0	0	3	3	3	0	Small	Multidrug	Resistance	protein
Glyco_hydro_77	PF02446.12	gi|379005235|ref|YP_005260907.1|	-	4.5e-126	421.3	0.0	2.8e-125	418.7	0.0	1.8	1	1	0	1	1	1	1	4-alpha-glucanotransferase
HTH_3	PF01381.17	gi|379005237|ref|YP_005260909.1|	-	0.0002	21.1	0.0	0.00055	19.7	0.0	1.9	1	0	0	1	1	1	1	Helix-turn-helix
Rubrerythrin	PF02915.12	gi|379005237|ref|YP_005260909.1|	-	0.0012	19.2	2.4	0.027	14.8	0.1	2.9	1	1	1	2	2	2	2	Rubrerythrin
HTH_28	PF13518.1	gi|379005237|ref|YP_005260909.1|	-	0.0074	16.2	0.0	0.6	10.1	0.0	2.9	2	1	1	3	3	3	1	Helix-turn-helix	domain
HTH_1	PF00126.22	gi|379005237|ref|YP_005260909.1|	-	0.011	15.4	0.0	0.032	13.9	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Sigma70_r4_2	PF08281.7	gi|379005237|ref|YP_005260909.1|	-	0.013	14.9	0.3	0.35	10.3	0.0	3.2	3	0	0	3	3	3	0	Sigma-70,	region	4
HTH_23	PF13384.1	gi|379005237|ref|YP_005260909.1|	-	0.014	15.0	0.1	0.38	10.4	0.0	2.8	2	0	0	2	2	2	0	Homeodomain-like	domain
Ferritin_2	PF13668.1	gi|379005237|ref|YP_005260909.1|	-	0.016	15.1	1.1	7.6	6.4	0.0	2.9	1	1	1	3	3	3	0	Ferritin-like	domain
HTH_37	PF13744.1	gi|379005237|ref|YP_005260909.1|	-	0.04	13.7	1.1	0.33	10.8	0.0	2.8	2	1	1	4	4	4	0	Helix-turn-helix	domain
Mn_catalase	PF05067.7	gi|379005237|ref|YP_005260909.1|	-	0.06	12.0	0.1	0.16	10.6	0.0	1.7	1	1	1	2	2	2	0	Manganese	containing	catalase
HTH_17	PF12728.2	gi|379005237|ref|YP_005260909.1|	-	0.083	13.1	0.0	0.57	10.4	0.0	2.4	3	0	0	3	3	3	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379005237|ref|YP_005260909.1|	-	0.094	12.4	0.1	0.45	10.2	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_ISL3	PF13542.1	gi|379005237|ref|YP_005260909.1|	-	0.1	11.8	0.0	4.5	6.5	0.0	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DFP	PF04127.10	gi|379005238|ref|YP_005260910.1|	-	1.5e-52	177.8	0.2	8.5e-51	172.1	0.0	2.2	2	0	0	2	2	2	1	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|379005238|ref|YP_005260910.1|	-	3.2e-27	94.7	2.5	6.6e-27	93.7	1.7	1.6	1	0	0	1	1	1	1	Flavoprotein
YjeF_N	PF03853.10	gi|379005238|ref|YP_005260910.1|	-	0.0052	16.4	0.0	1.1	8.8	0.0	2.4	2	0	0	2	2	2	2	YjeF-related	protein	N-terminus
Glyco_transf_4	PF13439.1	gi|379005238|ref|YP_005260910.1|	-	0.011	15.4	1.4	0.54	9.9	0.0	3.0	2	2	2	4	4	4	0	Glycosyltransferase	Family	4
Ank	PF00023.25	gi|379005238|ref|YP_005260910.1|	-	0.12	12.2	0.0	0.36	10.7	0.0	1.8	1	0	0	1	1	1	0	Ankyrin	repeat
NAD_binding_10	PF13460.1	gi|379005238|ref|YP_005260910.1|	-	0.12	12.3	1.5	0.4	10.6	0.0	2.5	3	1	0	3	3	3	0	NADH(P)-binding
Glyco_trans_4_4	PF13579.1	gi|379005238|ref|YP_005260910.1|	-	0.72	9.9	16.0	5.8	7.0	1.1	4.4	2	2	0	2	2	2	0	Glycosyl	transferase	4-like	domain
PALP	PF00291.20	gi|379005239|ref|YP_005260911.1|	-	1.4e-34	119.7	0.0	2.8e-34	118.7	0.0	1.4	1	1	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
CN_hydrolase	PF00795.17	gi|379005239|ref|YP_005260911.1|	-	0.013	14.8	0.0	1	8.6	0.0	2.2	2	0	0	2	2	2	0	Carbon-nitrogen	hydrolase
HTH_36	PF13730.1	gi|379005240|ref|YP_005260912.1|	-	0.084	13.0	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MFS_1	PF07690.11	gi|379005241|ref|YP_005260913.1|	-	2.2e-28	98.9	56.8	6e-18	64.6	15.9	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|379005241|ref|YP_005260913.1|	-	4.1e-07	28.7	31.1	0.0001	20.8	5.4	2.5	2	1	0	2	2	2	2	MFS/sugar	transport	protein
Sugar_tr	PF00083.19	gi|379005241|ref|YP_005260913.1|	-	0.00014	20.5	6.7	0.00014	20.5	4.6	2.8	2	2	0	2	2	2	2	Sugar	(and	other)	transporter
DUF3112	PF11309.3	gi|379005241|ref|YP_005260913.1|	-	0.33	10.7	3.0	0.3	10.8	0.1	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3112)
DUF3536	PF12055.3	gi|379005242|ref|YP_005260914.1|	-	2.6e-41	141.6	0.5	1.7e-39	135.7	0.2	2.6	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF3536)
Glyco_hydro_57	PF03065.10	gi|379005242|ref|YP_005260914.1|	-	4e-21	75.3	0.0	1.7e-20	73.2	0.0	1.7	1	1	1	2	2	2	1	Glycosyl	hydrolase	family	57
TGFb_propeptide	PF00688.13	gi|379005242|ref|YP_005260914.1|	-	0.13	11.5	0.0	0.2	10.9	0.0	1.2	1	0	0	1	1	1	0	TGF-beta	propeptide
SecE	PF00584.15	gi|379005243|ref|YP_005260915.1|	-	0.00011	21.6	1.5	0.00036	20.0	0.0	1.9	2	0	0	2	2	2	1	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
Polysacc_synt_C	PF14667.1	gi|379005243|ref|YP_005260915.1|	-	0.016	15.0	3.3	0.017	14.9	2.3	1.1	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	C-terminal	domain
DUF1109	PF06532.6	gi|379005243|ref|YP_005260915.1|	-	0.074	12.4	4.1	0.082	12.3	2.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1109)
DUF4184	PF13803.1	gi|379005243|ref|YP_005260915.1|	-	0.091	12.0	0.5	0.094	12.0	0.3	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4184)
COX15-CtaA	PF02628.10	gi|379005243|ref|YP_005260915.1|	-	0.12	11.2	2.3	0.12	11.2	1.6	1.0	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
NnrU	PF07298.6	gi|379005243|ref|YP_005260915.1|	-	0.16	11.3	2.8	0.16	11.2	1.9	1.0	1	0	0	1	1	1	0	NnrU	protein
Fig1	PF12351.3	gi|379005243|ref|YP_005260915.1|	-	0.55	10.1	4.0	0.59	9.9	2.7	1.0	1	0	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
YobH	PF13996.1	gi|379005243|ref|YP_005260915.1|	-	0.75	9.7	6.9	2.2	8.2	0.2	2.1	2	0	0	2	2	2	0	YobH-like	protein
KASH	PF10541.4	gi|379005243|ref|YP_005260915.1|	-	2.8	7.8	7.8	1.1	9.1	0.4	2.1	2	0	0	2	2	2	0	Nuclear	envelope	localisation	domain
DUF4117	PF13491.1	gi|379005243|ref|YP_005260915.1|	-	4.7	6.6	7.4	2.1	7.7	0.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4117)
DUF4480	PF13715.1	gi|379005245|ref|YP_005260917.1|	-	0.0002	21.3	1.6	0.00061	19.7	0.3	2.5	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4480)
CarboxypepD_reg	PF13620.1	gi|379005245|ref|YP_005260917.1|	-	0.00026	20.9	1.5	0.00026	20.9	1.0	3.8	4	1	0	4	4	4	1	Carboxypeptidase	regulatory-like	domain
TPP_enzyme_C	PF02775.16	gi|379005246|ref|YP_005260918.1|	-	6.1e-26	90.8	0.2	9.1e-26	90.2	0.1	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|379005247|ref|YP_005260919.1|	-	8.4e-77	257.7	1.8	8.4e-77	257.7	1.2	1.9	1	1	1	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|379005247|ref|YP_005260919.1|	-	1.9e-06	27.8	0.0	6.3e-06	26.1	0.0	1.9	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4	PF00037.22	gi|379005248|ref|YP_005260920.1|	-	1.9e-14	52.5	14.7	1.9e-08	33.5	3.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379005248|ref|YP_005260920.1|	-	1.2e-10	41.1	7.2	2.4e-10	40.1	5.0	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005248|ref|YP_005260920.1|	-	1.4e-09	37.6	22.0	5.4e-07	29.3	7.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379005248|ref|YP_005260920.1|	-	3.3e-09	36.9	20.4	8.1e-08	32.5	7.7	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379005248|ref|YP_005260920.1|	-	1.9e-08	33.8	12.8	5.2e-06	26.0	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|379005248|ref|YP_005260920.1|	-	2.1e-08	33.6	11.3	0.00036	20.2	1.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379005248|ref|YP_005260920.1|	-	6.6e-08	33.1	8.3	0.00037	21.1	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|379005248|ref|YP_005260920.1|	-	1.5e-07	31.5	10.2	2.3e-07	30.9	7.1	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379005248|ref|YP_005260920.1|	-	7.9e-06	25.8	7.9	1.5e-05	24.8	5.5	1.4	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379005248|ref|YP_005260920.1|	-	4e-05	23.5	11.3	0.015	15.5	0.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|379005248|ref|YP_005260920.1|	-	4.4e-05	23.9	6.0	0.051	14.1	0.6	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|379005248|ref|YP_005260920.1|	-	6.2e-05	23.3	5.6	0.035	14.5	0.3	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379005248|ref|YP_005260920.1|	-	0.0002	21.6	10.5	0.032	14.5	0.8	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|379005248|ref|YP_005260920.1|	-	0.0076	16.6	12.7	0.034	14.5	1.0	2.5	2	1	1	3	3	3	2	4Fe-4S	single	cluster	domain
DUF678	PF05077.7	gi|379005248|ref|YP_005260920.1|	-	0.043	13.8	1.0	0.066	13.2	0.7	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF678)
Fer4_3	PF12798.2	gi|379005248|ref|YP_005260920.1|	-	0.15	12.7	5.8	0.15	12.7	4.0	2.6	2	1	0	2	2	2	0	4Fe-4S	binding	domain
POR	PF01558.13	gi|379005249|ref|YP_005260921.1|	-	4.1e-36	124.4	0.1	6.3e-36	123.8	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Nitro_FeMo-Co	PF02579.12	gi|379005250|ref|YP_005260922.1|	-	2.2e-15	56.4	0.0	2.9e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
Peripla_BP_2	PF01497.13	gi|379005250|ref|YP_005260922.1|	-	0.0094	15.0	0.0	0.0094	15.0	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
AFOR_N	PF02730.10	gi|379005252|ref|YP_005260924.1|	-	7.1e-27	94.0	0.2	1.1e-26	93.4	0.1	1.2	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
AFOR_C	PF01314.13	gi|379005252|ref|YP_005260924.1|	-	1e-11	44.2	0.0	1.3e-10	40.5	0.0	2.5	2	1	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
CBS	PF00571.23	gi|379005253|ref|YP_005260925.1|	-	1.1e-30	105.1	5.7	1.7e-16	59.6	0.6	2.0	2	0	0	2	2	2	2	CBS	domain
H_kinase_N	PF12282.3	gi|379005253|ref|YP_005260925.1|	-	0.0035	16.9	1.4	0.042	13.4	1.0	2.0	1	1	0	1	1	1	1	Signal	transduction	histidine	kinase
Rib_5-P_isom_A	PF06026.9	gi|379005254|ref|YP_005260926.1|	-	2.9e-53	179.7	0.0	3.5e-53	179.4	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
DeoRC	PF00455.17	gi|379005254|ref|YP_005260926.1|	-	3.9e-07	29.8	0.2	9.5e-07	28.5	0.0	1.6	2	0	0	2	2	2	1	DeoR	C	terminal	sensor	domain
Sugar-bind	PF04198.8	gi|379005254|ref|YP_005260926.1|	-	0.0059	15.5	0.0	0.012	14.5	0.0	1.4	1	0	0	1	1	1	1	Putative	sugar-binding	domain
Peripla_BP_6	PF13458.1	gi|379005254|ref|YP_005260926.1|	-	0.03	13.6	0.0	0.04	13.2	0.0	1.2	1	0	0	1	1	1	0	Periplasmic	binding	protein
DUF3281	PF11685.3	gi|379005255|ref|YP_005260927.1|	-	0.027	13.6	0.0	0.039	13.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3281)
AIRS	PF00586.19	gi|379005256|ref|YP_005260928.1|	-	2.4e-08	34.0	0.0	4.8e-08	33.1	0.0	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Cullin_Nedd8	PF10557.4	gi|379005257|ref|YP_005260929.1|	-	0.007	16.1	0.0	0.011	15.5	0.0	1.4	1	0	0	1	1	1	1	Cullin	protein	neddylation	domain
HTH_27	PF13463.1	gi|379005257|ref|YP_005260929.1|	-	0.11	12.8	0.0	0.48	10.7	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
UPF0047	PF01894.12	gi|379005258|ref|YP_005260930.1|	-	1.2e-35	121.8	0.0	1.4e-35	121.6	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
DUF92	PF01940.11	gi|379005259|ref|YP_005260931.1|	-	6.7e-55	185.6	14.1	8.1e-55	185.4	9.7	1.0	1	0	0	1	1	1	1	Integral	membrane	protein	DUF92
polyprenyl_synt	PF00348.12	gi|379005260|ref|YP_005260932.1|	-	2e-49	167.7	0.0	2.7e-49	167.3	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
Annexin	PF00191.15	gi|379005260|ref|YP_005260932.1|	-	0.086	12.7	0.2	21	5.1	0.0	2.7	2	0	0	2	2	2	0	Annexin
AA_kinase	PF00696.23	gi|379005261|ref|YP_005260933.1|	-	2.5e-33	115.6	0.0	2.9e-33	115.4	0.0	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
DUF1700	PF08006.6	gi|379005263|ref|YP_005260935.1|	-	4.9	6.4	5.7	5.1	6.3	3.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1700)
ABC_tran	PF00005.22	gi|379005264|ref|YP_005260936.1|	-	7.7e-23	81.3	0.0	1.1e-22	80.8	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005264|ref|YP_005260936.1|	-	3.8e-12	46.7	0.0	3.6e-10	40.2	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379005264|ref|YP_005260936.1|	-	2.5e-06	26.8	0.2	5e-06	25.9	0.2	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|379005264|ref|YP_005260936.1|	-	1.3e-05	24.5	0.6	0.0025	17.0	0.1	2.5	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.1	gi|379005264|ref|YP_005260936.1|	-	4.1e-05	23.4	0.0	6.2e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379005264|ref|YP_005260936.1|	-	4.9e-05	23.7	0.0	7.9e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
MutS_V	PF00488.16	gi|379005264|ref|YP_005260936.1|	-	0.00087	18.7	0.1	0.32	10.3	0.0	2.1	2	0	0	2	2	2	2	MutS	domain	V
DUF258	PF03193.11	gi|379005264|ref|YP_005260936.1|	-	0.0018	17.5	0.1	0.0031	16.7	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|379005264|ref|YP_005260936.1|	-	0.002	18.4	0.0	0.0054	17.0	0.0	1.7	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379005264|ref|YP_005260936.1|	-	0.0054	16.7	0.2	0.0086	16.0	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
NACHT	PF05729.7	gi|379005264|ref|YP_005260936.1|	-	0.011	15.3	0.0	0.02	14.5	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|379005264|ref|YP_005260936.1|	-	0.017	15.3	0.0	0.087	13.0	0.0	2.0	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|379005264|ref|YP_005260936.1|	-	0.017	15.9	0.1	0.053	14.3	0.0	1.9	3	0	0	3	3	1	0	AAA	domain
AAA_25	PF13481.1	gi|379005264|ref|YP_005260936.1|	-	0.024	14.0	0.0	0.063	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|379005264|ref|YP_005260936.1|	-	0.036	13.6	0.0	0.13	11.8	0.0	1.9	3	0	0	3	3	2	0	AAA	domain
AAA_22	PF13401.1	gi|379005264|ref|YP_005260936.1|	-	0.036	14.2	0.0	0.088	12.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379005264|ref|YP_005260936.1|	-	0.054	13.4	0.0	0.084	12.8	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.4	gi|379005264|ref|YP_005260936.1|	-	0.057	12.9	0.0	0.091	12.2	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|379005264|ref|YP_005260936.1|	-	0.071	13.0	0.0	0.16	11.9	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_14	PF13173.1	gi|379005264|ref|YP_005260936.1|	-	0.092	12.6	0.0	0.26	11.1	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379005264|ref|YP_005260936.1|	-	0.1	11.7	0.1	0.15	11.2	0.1	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
UPF0079	PF02367.12	gi|379005264|ref|YP_005260936.1|	-	0.1	12.2	0.0	0.21	11.2	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|379005264|ref|YP_005260936.1|	-	0.1	12.2	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
cobW	PF02492.14	gi|379005264|ref|YP_005260936.1|	-	0.11	11.8	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
T2SE	PF00437.15	gi|379005264|ref|YP_005260936.1|	-	0.12	11.2	0.1	0.19	10.6	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|379005264|ref|YP_005260936.1|	-	0.13	11.6	0.1	0.25	10.7	0.1	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
IstB_IS21	PF01695.12	gi|379005264|ref|YP_005260936.1|	-	0.18	11.1	0.1	0.32	10.3	0.1	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Aminotran_3	PF00202.16	gi|379005265|ref|YP_005260937.1|	-	2.3e-101	339.0	0.0	2.8e-101	338.7	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|379005265|ref|YP_005260937.1|	-	0.028	13.3	0.0	0.042	12.8	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|379005265|ref|YP_005260937.1|	-	0.16	11.1	0.0	0.34	10.0	0.0	1.5	1	0	0	1	1	1	0	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|379005265|ref|YP_005260937.1|	-	0.18	10.5	0.0	0.75	8.4	0.0	1.8	2	0	0	2	2	2	0	Aminotransferase	class-V
gp45-slide_C	PF09116.5	gi|379005266|ref|YP_005260938.1|	-	0.1	12.5	0.0	0.1	12.5	0.0	1.0	1	0	0	1	1	1	0	gp45	sliding	clamp,	C	terminal
DUF91	PF01939.11	gi|379005267|ref|YP_005260939.1|	-	3.9e-56	189.7	0.2	4.3e-56	189.6	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
PDDEXK_4	PF14281.1	gi|379005267|ref|YP_005260939.1|	-	4.7e-05	23.3	0.0	6.1e-05	22.9	0.0	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
UPF0102	PF02021.12	gi|379005267|ref|YP_005260939.1|	-	0.0012	18.7	0.0	0.037	13.9	0.0	2.3	2	0	0	2	2	2	1	Uncharacterised	protein	family	UPF0102
Cas_Cas4	PF01930.12	gi|379005267|ref|YP_005260939.1|	-	0.0059	16.5	0.1	0.018	14.9	0.0	1.8	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF83
DUF3049	PF11250.3	gi|379005267|ref|YP_005260939.1|	-	0.0091	15.7	1.0	0.23	11.2	0.0	2.8	3	0	0	3	3	3	1	Protein	of	unknown	function	(DUF3049)
GyrI-like	PF06445.10	gi|379005268|ref|YP_005260940.1|	-	0.0002	21.4	0.0	0.00022	21.2	0.0	1.2	1	0	0	1	1	1	1	GyrI-like	small	molecule	binding	domain
Cass2	PF14526.1	gi|379005268|ref|YP_005260940.1|	-	0.0046	16.9	0.0	0.014	15.4	0.0	1.6	1	1	1	2	2	2	1	Integron-associated	effector	binding	protein
RtcB	PF01139.12	gi|379005269|ref|YP_005260941.1|	-	3.9e-151	503.8	0.0	4.4e-151	503.6	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DUF2374	PF09574.5	gi|379005271|ref|YP_005260943.1|	-	0.069	12.7	0.2	0.088	12.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(Duf2374)
His_biosynth	PF00977.16	gi|379005275|ref|YP_005260947.1|	-	1.2e-47	162.0	0.1	1.4e-47	161.9	0.1	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|379005275|ref|YP_005260947.1|	-	0.0013	18.0	0.1	0.35	10.0	0.1	2.4	2	1	0	2	2	2	2	PcrB	family
IGPD	PF00475.13	gi|379005276|ref|YP_005260948.1|	-	6.7e-46	155.7	0.0	8e-46	155.4	0.0	1.1	1	0	0	1	1	1	1	Imidazoleglycerol-phosphate	dehydratase
His_biosynth	PF00977.16	gi|379005278|ref|YP_005260950.1|	-	4.1e-84	281.4	0.9	4.7e-84	281.2	0.6	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
DHO_dh	PF01180.16	gi|379005278|ref|YP_005260950.1|	-	6.9e-10	38.3	0.1	5.3e-05	22.3	0.0	2.1	2	0	0	2	2	2	2	Dihydroorotate	dehydrogenase
Dus	PF01207.12	gi|379005278|ref|YP_005260950.1|	-	9.2e-10	37.8	0.1	2.5e-05	23.2	0.0	2.2	1	1	1	2	2	2	2	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|379005278|ref|YP_005260950.1|	-	1.5e-08	34.0	1.6	0.00086	18.4	0.2	2.2	2	0	0	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
TMP-TENI	PF02581.12	gi|379005278|ref|YP_005260950.1|	-	6e-08	31.9	0.7	0.0037	16.4	0.1	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|379005278|ref|YP_005260950.1|	-	1.6e-07	30.7	5.7	0.00063	18.9	0.4	2.1	2	0	0	2	2	2	2	Nitronate	monooxygenase
IMPDH	PF00478.20	gi|379005278|ref|YP_005260950.1|	-	1.7e-06	27.1	1.4	0.011	14.7	0.1	2.1	2	0	0	2	2	2	2	IMP	dehydrogenase	/	GMP	reductase	domain
PcrB	PF01884.12	gi|379005278|ref|YP_005260950.1|	-	1.1e-05	24.8	2.5	0.00031	20.0	0.1	2.5	2	1	0	2	2	2	1	PcrB	family
G3P_antiterm	PF04309.7	gi|379005278|ref|YP_005260950.1|	-	0.0065	15.5	0.1	0.57	9.1	0.0	2.2	2	0	0	2	2	2	1	Glycerol-3-phosphate	responsive	antiterminator
FMN_dh	PF01070.13	gi|379005278|ref|YP_005260950.1|	-	0.0074	15.1	5.7	0.25	10.1	4.0	2.2	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
BtpA	PF03437.10	gi|379005278|ref|YP_005260950.1|	-	0.015	14.5	0.8	0.12	11.5	0.2	2.2	2	0	0	2	2	2	0	BtpA	family
Trp_syntA	PF00290.15	gi|379005278|ref|YP_005260950.1|	-	0.02	13.4	0.6	0.092	11.2	0.1	1.9	2	0	0	2	2	2	0	Tryptophan	synthase	alpha	chain
IGPS	PF00218.16	gi|379005278|ref|YP_005260950.1|	-	0.035	13.1	0.0	0.89	8.5	0.0	2.4	2	1	0	2	2	2	0	Indole-3-glycerol	phosphate	synthase
DUF561	PF04481.7	gi|379005278|ref|YP_005260950.1|	-	0.036	13.0	0.0	6.1	5.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
Pyr_redox	PF00070.22	gi|379005278|ref|YP_005260950.1|	-	0.039	14.3	3.3	0.52	10.7	0.5	3.3	3	1	1	4	4	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
Histidinol_dh	PF00815.15	gi|379005279|ref|YP_005260951.1|	-	1.4e-55	188.6	0.0	2.3e-55	187.9	0.0	1.3	1	0	0	1	1	1	1	Histidinol	dehydrogenase
PRA-PH	PF01503.12	gi|379005280|ref|YP_005260952.1|	-	2.4e-13	50.1	0.2	2.8e-13	49.9	0.2	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.12	gi|379005280|ref|YP_005260952.1|	-	5.6e-06	26.2	2.6	9e-06	25.5	0.1	1.9	2	0	0	2	2	2	1	MazG	nucleotide	pyrophosphohydrolase	domain
SpoVS	PF04232.7	gi|379005280|ref|YP_005260952.1|	-	0.011	15.2	0.1	0.016	14.7	0.0	1.2	1	0	0	1	1	1	0	Stage	V	sporulation	protein	S	(SpoVS)
DUF4164	PF13747.1	gi|379005280|ref|YP_005260952.1|	-	0.17	12.0	2.7	1.8	8.7	1.9	2.1	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4164)
DAO	PF01266.19	gi|379005282|ref|YP_005260954.1|	-	5.8e-11	41.9	7.2	9.7e-06	24.7	0.2	2.6	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|379005282|ref|YP_005260954.1|	-	2.6e-10	40.4	0.3	2.7e-06	27.4	0.1	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|379005282|ref|YP_005260954.1|	-	4.4e-10	38.6	2.3	2.8e-05	22.8	0.5	2.7	3	0	0	3	3	3	2	HI0933-like	protein
GIDA	PF01134.17	gi|379005282|ref|YP_005260954.1|	-	3.8e-09	35.8	1.4	0.0014	17.5	0.0	2.4	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|379005282|ref|YP_005260954.1|	-	1.9e-06	27.0	1.6	1.9e-06	27.0	1.1	2.8	3	0	0	3	3	3	1	FAD	binding	domain
Thi4	PF01946.12	gi|379005282|ref|YP_005260954.1|	-	5.6e-06	25.6	0.2	1.2e-05	24.5	0.1	1.5	1	0	0	1	1	1	1	Thi4	family
FAD_binding_3	PF01494.14	gi|379005282|ref|YP_005260954.1|	-	1.4e-05	24.3	0.2	2.1e-05	23.7	0.2	1.2	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379005282|ref|YP_005260954.1|	-	4e-05	23.7	0.3	0.018	15.1	0.2	2.2	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379005282|ref|YP_005260954.1|	-	9e-05	21.5	0.3	0.00017	20.6	0.2	1.4	2	0	0	2	2	2	1	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|379005282|ref|YP_005260954.1|	-	0.00021	21.1	0.2	0.093	12.5	0.0	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
NAD_binding_8	PF13450.1	gi|379005282|ref|YP_005260954.1|	-	0.00052	19.9	1.0	0.0018	18.2	0.7	1.9	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|379005282|ref|YP_005260954.1|	-	0.0088	16.4	2.4	1.6	9.2	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
ThiF	PF00899.16	gi|379005282|ref|YP_005260954.1|	-	0.023	14.5	0.7	0.061	13.1	0.5	1.7	1	0	0	1	1	1	0	ThiF	family
FAD_oxidored	PF12831.2	gi|379005282|ref|YP_005260954.1|	-	0.026	13.6	5.1	0.098	11.7	2.4	2.0	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
DSPn	PF14671.1	gi|379005282|ref|YP_005260954.1|	-	0.061	13.3	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Dual	specificity	protein	phosphatase,	N-terminal	half
Trp_halogenase	PF04820.9	gi|379005282|ref|YP_005260954.1|	-	0.23	10.0	1.4	0.34	9.4	1.0	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
PaREP1	PF05942.6	gi|379005283|ref|YP_005260955.1|	-	7e-34	116.1	1.7	8.9e-34	115.8	1.2	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Adenylsucc_synt	PF00709.16	gi|379005284|ref|YP_005260956.1|	-	7.6e-71	238.9	0.0	2e-37	128.8	0.0	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
Lyase_1	PF00206.15	gi|379005285|ref|YP_005260957.1|	-	8.2e-33	113.9	0.0	1.1e-32	113.4	0.0	1.2	1	0	0	1	1	1	1	Lyase
ADSL_C	PF10397.4	gi|379005285|ref|YP_005260957.1|	-	0.022	14.7	0.1	0.13	12.2	0.0	2.3	2	0	0	2	2	2	0	Adenylosuccinate	lyase	C-terminus
HisG	PF01634.13	gi|379005286|ref|YP_005260958.1|	-	3e-47	160.2	0.0	4.5e-47	159.6	0.0	1.2	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|379005286|ref|YP_005260958.1|	-	5.6e-23	80.6	0.8	9.5e-23	79.9	0.1	1.7	2	0	0	2	2	2	1	HisG,	C-terminal	domain
Aminotran_1_2	PF00155.16	gi|379005287|ref|YP_005260959.1|	-	8.8e-33	113.7	0.0	9.7e-33	113.5	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Alliinase_C	PF04864.8	gi|379005287|ref|YP_005260959.1|	-	0.0048	15.5	0.0	0.0072	15.0	0.0	1.1	1	0	0	1	1	1	1	Allinase
Cys_Met_Meta_PP	PF01053.15	gi|379005287|ref|YP_005260959.1|	-	0.1	10.8	0.0	0.13	10.5	0.0	1.1	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
PRA-CH	PF01502.13	gi|379005288|ref|YP_005260960.1|	-	8.8e-32	108.5	0.1	1.3e-31	107.9	0.1	1.3	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
PGM_PMM_III	PF02880.11	gi|379005288|ref|YP_005260960.1|	-	0.0021	18.1	0.1	0.0026	17.7	0.0	1.1	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
Peptidase_U32	PF01136.14	gi|379005288|ref|YP_005260960.1|	-	0.086	11.7	0.0	0.1	11.5	0.0	1.1	1	0	0	1	1	1	0	Peptidase	family	U32
GATase	PF00117.23	gi|379005289|ref|YP_005260961.1|	-	6.7e-23	81.1	0.0	7.6e-23	80.9	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.14	gi|379005289|ref|YP_005260961.1|	-	6.9e-07	29.0	0.0	4.2e-06	26.5	0.0	2.0	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.8	gi|379005289|ref|YP_005260961.1|	-	0.0004	19.9	1.4	0.39	10.1	0.0	2.9	3	0	0	3	3	3	2	Peptidase	C26
GATase_3	PF07685.9	gi|379005289|ref|YP_005260961.1|	-	0.02	14.4	0.3	0.037	13.6	0.2	1.6	1	1	0	1	1	1	0	CobB/CobQ-like	glutamine	amidotransferase	domain
Thymidylate_kin	PF02223.12	gi|379005290|ref|YP_005260962.1|	-	8e-50	168.7	0.0	9.2e-50	168.5	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.1	gi|379005290|ref|YP_005260962.1|	-	2.9e-08	34.0	0.0	7.7e-08	32.7	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|379005290|ref|YP_005260962.1|	-	1.8e-06	28.0	0.0	2.7e-06	27.4	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379005290|ref|YP_005260962.1|	-	1.2e-05	25.2	0.0	5.6e-05	23.0	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|379005290|ref|YP_005260962.1|	-	0.00049	20.9	0.1	0.0011	19.7	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
dNK	PF01712.14	gi|379005290|ref|YP_005260962.1|	-	0.0052	16.7	0.0	0.01	15.7	0.0	1.5	1	1	0	1	1	1	1	Deoxynucleoside	kinase
SKI	PF01202.17	gi|379005290|ref|YP_005260962.1|	-	0.033	14.0	0.0	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	Shikimate	kinase
ABC_tran	PF00005.22	gi|379005290|ref|YP_005260962.1|	-	0.087	13.1	0.0	0.14	12.4	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_5	PF07728.9	gi|379005290|ref|YP_005260962.1|	-	0.1	12.3	0.0	0.19	11.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
Sld5	PF05916.6	gi|379005291|ref|YP_005260963.1|	-	1.3e-09	38.2	0.3	1.6e-09	37.9	0.2	1.1	1	0	0	1	1	1	1	GINS	complex	protein
Abi	PF02517.11	gi|379005292|ref|YP_005260964.1|	-	2.6e-15	56.3	7.9	2.6e-15	56.3	5.5	2.2	1	1	0	2	2	2	1	CAAX	protease	self-immunity
Lysine_decarbox	PF03641.9	gi|379005293|ref|YP_005260965.1|	-	1e-07	31.8	0.3	1.6e-07	31.2	0.1	1.6	1	1	0	1	1	1	1	Possible	lysine	decarboxylase
Nuc_deoxyrib_tr	PF05014.10	gi|379005293|ref|YP_005260965.1|	-	0.00052	19.8	0.1	0.0012	18.6	0.0	1.8	1	1	1	2	2	2	1	Nucleoside	2-deoxyribosyltransferase
MoCo_carrier	PF12694.2	gi|379005293|ref|YP_005260965.1|	-	0.0026	17.2	0.0	0.0039	16.6	0.0	1.3	1	0	0	1	1	1	1	Putative	molybdenum	carrier
B12-binding	PF02310.14	gi|379005293|ref|YP_005260965.1|	-	0.11	12.3	2.3	1.1	9.1	0.1	2.5	3	0	0	3	3	3	0	B12	binding	domain
MoCF_biosynth	PF00994.19	gi|379005294|ref|YP_005260966.1|	-	3.9e-30	104.1	0.2	4.6e-30	103.9	0.1	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
SCP2	PF02036.12	gi|379005295|ref|YP_005260967.1|	-	5.5e-06	26.5	0.0	6.1e-06	26.4	0.0	1.1	1	0	0	1	1	1	1	SCP-2	sterol	transfer	family
Acid_PPase	PF12689.2	gi|379005296|ref|YP_005260968.1|	-	1.4e-09	37.7	0.0	1.7e-09	37.5	0.0	1.1	1	0	0	1	1	1	1	Acid	Phosphatase
NIF	PF03031.13	gi|379005296|ref|YP_005260968.1|	-	0.00013	21.7	0.1	0.00016	21.3	0.1	1.1	1	0	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
HAD_2	PF13419.1	gi|379005296|ref|YP_005260968.1|	-	0.013	15.7	0.5	0.045	13.9	0.0	1.8	1	1	1	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
SBP_bac_8	PF13416.1	gi|379005297|ref|YP_005260969.1|	-	1.9e-30	106.5	1.6	2.6e-30	106.1	1.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|379005297|ref|YP_005260969.1|	-	1.5e-19	70.2	1.1	2.1e-19	69.8	0.8	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|379005297|ref|YP_005260969.1|	-	5e-15	56.0	7.4	7.4e-15	55.4	5.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|379005297|ref|YP_005260969.1|	-	1.3e-10	41.3	0.0	2.3e-10	40.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Dynamitin	PF04912.9	gi|379005297|ref|YP_005260969.1|	-	0.073	11.8	0.0	0.1	11.3	0.0	1.1	1	0	0	1	1	1	0	Dynamitin
DUF99	PF01949.11	gi|379005298|ref|YP_005260970.1|	-	7.8e-46	155.5	0.0	9.7e-46	155.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
AIRS_C	PF02769.17	gi|379005300|ref|YP_005260972.1|	-	3.6e-21	75.7	0.7	9.3e-21	74.4	0.3	1.7	2	0	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|379005300|ref|YP_005260972.1|	-	3.8e-10	39.8	0.2	1.3e-09	38.1	0.0	2.0	2	0	0	2	2	2	1	AIR	synthase	related	protein,	N-terminal	domain
DUF4126	PF13548.1	gi|379005300|ref|YP_005260972.1|	-	0.034	13.5	1.9	0.058	12.8	1.3	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4126)
MIF	PF01187.13	gi|379005300|ref|YP_005260972.1|	-	0.099	12.7	0.0	0.25	11.4	0.0	1.7	1	0	0	1	1	1	0	Macrophage	migration	inhibitory	factor	(MIF)
RimK	PF08443.6	gi|379005301|ref|YP_005260973.1|	-	5.8e-40	136.7	0.0	1.8e-39	135.2	0.0	1.7	2	1	0	2	2	2	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|379005301|ref|YP_005260973.1|	-	4.9e-13	48.5	0.0	8.6e-13	47.7	0.0	1.3	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|379005301|ref|YP_005260973.1|	-	9.2e-10	38.6	0.0	1.5e-09	37.9	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379005301|ref|YP_005260973.1|	-	1.9e-08	34.2	0.0	3.1e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|379005301|ref|YP_005260973.1|	-	0.014	14.1	0.0	0.025	13.3	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|379005301|ref|YP_005260973.1|	-	0.024	13.9	0.0	0.062	12.6	0.0	1.7	2	0	0	2	2	2	0	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|379005301|ref|YP_005260973.1|	-	0.075	12.4	0.1	0.29	10.4	0.1	1.9	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
CPSase_L_D2	PF02786.12	gi|379005302|ref|YP_005260974.1|	-	1.1e-96	322.2	0.0	1.7e-62	210.4	0.0	2.3	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|379005302|ref|YP_005260974.1|	-	4.2e-34	116.9	0.1	9.8e-17	61.0	0.0	2.6	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|379005302|ref|YP_005260974.1|	-	3.4e-32	111.6	0.4	3.3e-15	56.2	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
CPSase_L_D3	PF02787.14	gi|379005302|ref|YP_005260974.1|	-	6.3e-27	93.7	0.0	2e-26	92.1	0.0	1.8	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
ATPgrasp_Ter	PF15632.1	gi|379005302|ref|YP_005260974.1|	-	1.8e-24	86.0	0.1	6.6e-14	51.3	0.0	3.4	2	2	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|379005302|ref|YP_005260974.1|	-	4.5e-17	61.9	0.0	1.4e-07	31.0	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|379005302|ref|YP_005260974.1|	-	7.3e-14	51.6	0.0	3.4e-07	29.8	0.0	2.7	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|379005302|ref|YP_005260974.1|	-	2.4e-11	43.4	0.0	4.7e-06	26.2	0.0	2.8	2	0	0	2	2	2	2	RimK-like	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|379005302|ref|YP_005260974.1|	-	3.3e-11	42.8	0.0	0.00017	20.9	0.0	2.8	2	1	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.14	gi|379005302|ref|YP_005260974.1|	-	4.1e-10	39.5	0.0	9.9e-05	21.9	0.0	2.6	2	0	0	2	2	2	2	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_2	PF08442.5	gi|379005302|ref|YP_005260974.1|	-	0.00012	21.5	0.0	0.046	13.0	0.0	2.5	2	0	0	2	2	2	2	ATP-grasp	domain
Nitro_FeMo-Co	PF02579.12	gi|379005302|ref|YP_005260974.1|	-	0.038	14.0	0.1	0.75	9.9	0.0	3.1	4	0	0	4	4	4	0	Dinitrogenase	iron-molybdenum	cofactor
CPSase_sm_chain	PF00988.17	gi|379005303|ref|YP_005260975.1|	-	8.9e-51	170.8	0.0	1.3e-50	170.3	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|379005303|ref|YP_005260975.1|	-	9.9e-42	142.5	0.0	1.4e-41	142.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|379005303|ref|YP_005260975.1|	-	3.9e-12	46.0	0.3	2.5e-10	40.1	0.2	2.2	1	1	0	1	1	1	1	Peptidase	C26
Acetyltransf_1	PF00583.19	gi|379005304|ref|YP_005260976.1|	-	1.5e-07	31.3	0.1	2.7e-07	30.5	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|379005304|ref|YP_005260976.1|	-	1.8e-07	31.3	0.0	2.3e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|379005304|ref|YP_005260976.1|	-	0.00013	21.6	0.0	0.00021	20.9	0.0	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|379005304|ref|YP_005260976.1|	-	0.00014	21.8	0.0	0.0002	21.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379005304|ref|YP_005260976.1|	-	0.00032	20.8	0.0	0.00054	20.0	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
AdoMet_MTase	PF07757.8	gi|379005304|ref|YP_005260976.1|	-	0.024	14.7	0.0	0.034	14.2	0.0	1.3	1	0	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
FBPase_3	PF01950.11	gi|379005305|ref|YP_005260977.1|	-	5.9e-181	601.2	0.0	7e-181	601.0	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
MarC	PF01914.12	gi|379005306|ref|YP_005260978.1|	-	2e-30	105.4	23.6	2.7e-30	105.0	16.4	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
POR_N	PF01855.14	gi|379005307|ref|YP_005260979.1|	-	2.1e-50	171.3	0.1	4.1e-50	170.4	0.1	1.5	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|379005307|ref|YP_005260979.1|	-	1.1e-29	103.5	0.1	2.3e-29	102.5	0.0	1.4	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.16	gi|379005308|ref|YP_005260980.1|	-	3.8e-29	101.2	0.1	7.6e-29	100.2	0.0	1.5	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|379005308|ref|YP_005260980.1|	-	1.3e-14	53.8	0.3	1.9e-13	50.1	0.2	2.2	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
CxxCxxCC	PF03692.10	gi|379005309|ref|YP_005260981.1|	-	7.1e-08	32.8	0.2	1.2e-07	32.0	0.1	1.4	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DUF3556	PF12077.3	gi|379005310|ref|YP_005260982.1|	-	0.048	11.6	0.6	0.05	11.6	0.4	1.0	1	0	0	1	1	1	0	Transmembrane	protein	of	unknown	function	(DUF3556)
O-antigen_lig	PF13425.1	gi|379005310|ref|YP_005260982.1|	-	0.05	13.5	2.5	0.067	13.1	1.7	1.2	1	0	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
4HB_MCP_1	PF12729.2	gi|379005310|ref|YP_005260982.1|	-	0.12	11.7	0.3	0.13	11.6	0.2	1.2	1	0	0	1	1	1	0	Four	helix	bundle	sensory	module	for	signal	transduction
DUF1304	PF06993.7	gi|379005310|ref|YP_005260982.1|	-	0.15	11.7	3.3	0.22	11.2	2.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1304)
ATPase_gene1	PF09527.5	gi|379005310|ref|YP_005260982.1|	-	0.35	10.7	9.3	0.35	10.7	2.5	2.2	2	0	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
DUF1043	PF06295.7	gi|379005310|ref|YP_005260982.1|	-	0.56	9.8	2.7	3.2	7.4	0.3	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1043)
DUF3329	PF11808.3	gi|379005310|ref|YP_005260982.1|	-	1.9	8.6	5.4	21	5.2	0.0	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF3329)
FUN14	PF04930.10	gi|379005310|ref|YP_005260982.1|	-	3.3	8.0	5.2	16	5.8	3.6	1.9	1	1	0	1	1	1	0	FUN14	family
DUF3487	PF11990.3	gi|379005310|ref|YP_005260982.1|	-	3.6	7.0	5.2	5.2	6.4	2.3	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3487)
PrgI	PF12666.2	gi|379005310|ref|YP_005260982.1|	-	5.8	7.1	7.0	4.1	7.6	3.8	1.5	1	1	0	1	1	1	0	PrgI	family	protein
Peripla_BP_2	PF01497.13	gi|379005311|ref|YP_005260983.1|	-	0.13	11.3	0.0	0.25	10.4	0.0	1.4	2	0	0	2	2	2	0	Periplasmic	binding	protein
DUF1743	PF08489.6	gi|379005314|ref|YP_005260986.1|	-	4.1e-30	103.9	0.0	1.3e-29	102.3	0.0	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1743)
C1_1	PF00130.17	gi|379005314|ref|YP_005260986.1|	-	0.0023	17.5	0.1	0.0068	16.1	0.0	1.7	2	0	0	2	2	2	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
OrfB_Zn_ribbon	PF07282.6	gi|379005314|ref|YP_005260986.1|	-	0.0025	17.4	0.4	0.0052	16.4	0.2	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|379005314|ref|YP_005260986.1|	-	0.043	13.6	2.7	0.12	12.1	1.9	1.8	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-IS66	PF13005.2	gi|379005314|ref|YP_005260986.1|	-	0.11	12.5	0.2	0.11	12.5	0.1	2.5	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C2H2_4	PF13894.1	gi|379005314|ref|YP_005260986.1|	-	0.18	12.1	1.7	5.9	7.4	0.1	2.8	2	0	0	2	2	2	0	C2H2-type	zinc	finger
UPF0051	PF01458.12	gi|379005315|ref|YP_005260987.1|	-	7.4e-23	81.2	0.0	1.1e-22	80.6	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
SHR3_chaperone	PF08229.6	gi|379005317|ref|YP_005260989.1|	-	0.0083	15.0	0.3	0.014	14.4	0.2	1.3	1	0	0	1	1	1	1	ER	membrane	protein	SH3
Class_IIIsignal	PF04021.7	gi|379005317|ref|YP_005260989.1|	-	1.9	8.3	4.2	4.9	7.0	2.9	1.8	1	0	0	1	1	1	0	Class	III	signal	peptide
DUF4231	PF14015.1	gi|379005318|ref|YP_005260990.1|	-	0.27	11.2	5.8	0.051	13.5	0.7	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4231)
DUF3225	PF11533.3	gi|379005320|ref|YP_005260992.1|	-	0.12	12.0	0.1	0.31	10.7	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3225)
Methyltransf_11	PF08241.7	gi|379005321|ref|YP_005260993.1|	-	1.8e-10	41.1	0.0	3.6e-10	40.1	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|379005321|ref|YP_005260993.1|	-	0.0002	21.1	0.0	0.00025	20.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379005321|ref|YP_005260993.1|	-	0.024	14.9	0.1	0.16	12.3	0.0	2.0	1	1	0	1	1	1	0	Methyltransferase	domain
TrmB	PF01978.14	gi|379005322|ref|YP_005260994.1|	-	9.6e-05	22.0	0.0	0.00013	21.6	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|379005322|ref|YP_005260994.1|	-	0.00024	20.7	0.4	0.00038	20.0	0.3	1.3	1	0	0	1	1	1	1	MarR	family
FeoC	PF09012.5	gi|379005322|ref|YP_005260994.1|	-	0.003	17.2	0.0	0.0039	16.8	0.0	1.1	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
PaaX	PF07848.7	gi|379005322|ref|YP_005260994.1|	-	0.0038	17.1	0.1	0.0053	16.7	0.1	1.2	1	0	0	1	1	1	1	PaaX-like	protein
HTH_27	PF13463.1	gi|379005322|ref|YP_005260994.1|	-	0.0048	17.1	0.0	0.007	16.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|379005322|ref|YP_005260994.1|	-	0.0079	15.8	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|379005322|ref|YP_005260994.1|	-	0.0088	15.6	0.4	0.014	14.9	0.3	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
Rrf2	PF02082.15	gi|379005322|ref|YP_005260994.1|	-	0.014	15.5	0.0	0.018	15.1	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|379005322|ref|YP_005260994.1|	-	0.014	15.2	0.0	0.019	14.9	0.0	1.2	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_20	PF12840.2	gi|379005322|ref|YP_005260994.1|	-	0.026	14.3	0.6	0.043	13.6	0.4	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.16	gi|379005322|ref|YP_005260994.1|	-	0.036	13.4	0.3	0.061	12.7	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
Germane	PF10646.4	gi|379005322|ref|YP_005260994.1|	-	0.05	13.7	0.1	0.13	12.4	0.1	1.6	1	1	1	2	2	2	0	Sporulation	and	spore	germination
HTH_5	PF01022.15	gi|379005322|ref|YP_005260994.1|	-	0.05	13.2	0.0	0.063	12.9	0.0	1.1	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|379005322|ref|YP_005260994.1|	-	0.057	12.8	0.0	0.081	12.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF4423	PF14394.1	gi|379005322|ref|YP_005260994.1|	-	0.068	12.7	0.0	0.086	12.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
AphA_like	PF14557.1	gi|379005322|ref|YP_005260994.1|	-	0.11	12.0	0.1	0.14	11.7	0.0	1.2	1	0	0	1	1	1	0	Putative	AphA-like	transcriptional	regulator
DUF2204	PF09970.4	gi|379005323|ref|YP_005260995.1|	-	3.4e-07	29.9	0.0	1.8e-05	24.2	0.0	2.0	1	1	1	2	2	2	2	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Radical_SAM	PF04055.16	gi|379005325|ref|YP_005260997.1|	-	6e-19	68.8	0.0	1.8e-18	67.2	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Acetyltransf_1	PF00583.19	gi|379005325|ref|YP_005260997.1|	-	1.6e-07	31.2	0.1	7.6e-07	29.0	0.1	2.2	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|379005325|ref|YP_005260997.1|	-	0.11	12.6	0.1	0.33	11.1	0.1	1.8	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Apolipoprotein	PF01442.13	gi|379005326|ref|YP_005260998.1|	-	8.4e-09	35.2	18.9	2.2e-08	33.8	12.8	1.8	1	1	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
HSBP1	PF06825.7	gi|379005326|ref|YP_005260998.1|	-	1.3e-08	34.2	45.3	0.19	11.3	4.5	7.3	1	1	5	6	6	6	3	Heat	shock	factor	binding	protein	1
DUF1664	PF07889.7	gi|379005326|ref|YP_005260998.1|	-	1.7e-08	34.2	31.0	0.00013	21.7	7.6	4.4	1	1	3	4	4	4	3	Protein	of	unknown	function	(DUF1664)
ApoLp-III	PF07464.6	gi|379005326|ref|YP_005260998.1|	-	6.1e-08	32.8	22.1	1.5e-06	28.2	10.9	2.4	1	1	1	2	2	2	2	Apolipophorin-III	precursor	(apoLp-III)
MtrG	PF04210.8	gi|379005326|ref|YP_005260998.1|	-	5.7e-06	25.9	24.5	0.22	11.2	0.5	6.4	1	1	5	6	6	6	2	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
AAA_13	PF13166.1	gi|379005326|ref|YP_005260998.1|	-	6.8e-06	24.8	29.2	1.2e-05	23.9	16.2	2.0	1	1	1	2	2	2	2	AAA	domain
BLOC1_2	PF10046.4	gi|379005326|ref|YP_005260998.1|	-	1.1e-05	25.4	29.3	0.0088	16.1	5.5	3.7	1	1	3	4	4	4	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
FliD_C	PF07195.7	gi|379005326|ref|YP_005260998.1|	-	8.4e-05	21.9	29.8	0.00095	18.5	5.9	4.1	1	1	2	3	3	3	1	Flagellar	hook-associated	protein	2	C-terminus
HalX	PF08663.5	gi|379005326|ref|YP_005260998.1|	-	8.6e-05	22.4	22.7	0.22	11.5	0.2	6.9	3	2	4	7	7	6	1	HalX	domain
Baculo_PEP_C	PF04513.7	gi|379005326|ref|YP_005260998.1|	-	9.2e-05	22.2	19.4	0.006	16.4	4.5	3.2	1	1	2	3	3	3	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
MCPsignal	PF00015.16	gi|379005326|ref|YP_005260998.1|	-	9.8e-05	21.9	20.0	0.011	15.3	8.6	2.5	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
HAP1_N	PF04849.8	gi|379005326|ref|YP_005260998.1|	-	0.00012	21.1	27.7	0.0064	15.4	11.5	2.5	1	1	1	2	2	2	1	HAP1	N-terminal	conserved	region
Laminin_II	PF06009.7	gi|379005326|ref|YP_005260998.1|	-	0.00016	21.4	26.1	0.28	10.9	8.5	4.0	1	1	2	3	3	3	2	Laminin	Domain	II
TMF_DNA_bd	PF12329.3	gi|379005326|ref|YP_005260998.1|	-	0.00017	21.3	37.8	0.032	14.0	2.8	5.7	1	1	3	4	4	4	2	TATA	element	modulatory	factor	1	DNA	binding
TPR_MLP1_2	PF07926.7	gi|379005326|ref|YP_005260998.1|	-	0.00017	21.2	26.1	0.006	16.3	1.8	3.3	1	1	1	2	2	2	1	TPR/MLP1/MLP2-like	protein
DUF4631	PF15450.1	gi|379005326|ref|YP_005260998.1|	-	0.00021	19.7	21.8	0.00034	19.0	15.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4631)
AKNA	PF12443.3	gi|379005326|ref|YP_005260998.1|	-	0.00037	20.4	21.0	0.43	10.6	1.6	5.0	1	1	3	4	4	4	1	AT-hook-containing	transcription	factor
RmuC	PF02646.11	gi|379005326|ref|YP_005260998.1|	-	0.00047	19.0	22.2	0.12	11.2	3.4	3.1	1	1	2	3	3	3	3	RmuC	family
APG17	PF04108.7	gi|379005326|ref|YP_005260998.1|	-	0.0014	17.5	22.6	0.074	11.8	15.7	3.1	1	1	0	1	1	1	1	Autophagy	protein	Apg17
PMC2NT	PF08066.7	gi|379005326|ref|YP_005260998.1|	-	0.002	18.3	18.7	0.17	12.2	1.7	3.8	1	1	3	4	4	4	2	PMC2NT	(NUC016)	domain
TMP_2	PF06791.8	gi|379005326|ref|YP_005260998.1|	-	0.0025	17.4	5.2	0.014	14.9	1.6	2.4	1	1	1	2	2	2	1	Prophage	tail	length	tape	measure	protein
RPW8	PF05659.6	gi|379005326|ref|YP_005260998.1|	-	0.0032	17.0	23.0	0.063	12.8	0.3	3.6	1	1	2	3	3	3	1	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
Occludin_ELL	PF07303.8	gi|379005326|ref|YP_005260998.1|	-	0.0042	17.7	20.9	0.095	13.4	1.7	4.6	1	1	3	4	4	4	1	Occludin	homology	domain
Lipoprotein_7	PF01540.11	gi|379005326|ref|YP_005260998.1|	-	0.0047	16.0	24.6	0.0075	15.3	16.3	1.7	1	1	1	2	2	2	1	Adhesin	lipoprotein
TMCO5	PF14992.1	gi|379005326|ref|YP_005260998.1|	-	0.0055	15.8	35.0	0.74	8.8	1.5	3.0	1	1	2	3	3	3	1	TMCO5	family
Spectrin	PF00435.16	gi|379005326|ref|YP_005260998.1|	-	0.0063	16.7	22.4	0.3	11.3	3.5	3.2	1	1	2	3	3	3	2	Spectrin	repeat
HAUS-augmin3	PF14932.1	gi|379005326|ref|YP_005260998.1|	-	0.0071	15.5	24.3	0.079	12.1	9.8	2.6	1	1	2	3	3	3	2	HAUS	augmin-like	complex	subunit	3
AIP3	PF03915.8	gi|379005326|ref|YP_005260998.1|	-	0.012	14.6	22.9	0.018	13.9	15.9	1.4	1	0	0	1	1	1	0	Actin	interacting	protein	3
Peptidase_S46	PF10459.4	gi|379005326|ref|YP_005260998.1|	-	0.015	13.7	13.0	0.017	13.5	9.0	1.1	1	0	0	1	1	1	0	Peptidase	S46
DUF4455	PF14643.1	gi|379005326|ref|YP_005260998.1|	-	0.016	13.8	25.4	1.3	7.5	3.0	2.9	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4455)
Filament	PF00038.16	gi|379005326|ref|YP_005260998.1|	-	0.016	14.6	29.2	0.27	10.6	5.6	2.2	1	1	1	2	2	2	0	Intermediate	filament	protein
Vip3A_N	PF12495.3	gi|379005326|ref|YP_005260998.1|	-	0.017	14.8	11.5	0.062	12.9	5.6	2.2	1	1	1	2	2	2	0	Vegetative	insecticide	protein	3A	N	terminal
Matrilin_ccoil	PF10393.4	gi|379005326|ref|YP_005260998.1|	-	0.021	14.1	25.2	3.1	7.2	0.1	7.7	1	1	6	8	8	8	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
OmpH	PF03938.9	gi|379005326|ref|YP_005260998.1|	-	0.022	14.6	19.6	0.05	13.5	5.3	2.4	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
Prominin	PF05478.6	gi|379005326|ref|YP_005260998.1|	-	0.025	12.1	19.6	0.035	11.6	11.2	2.0	1	1	1	2	2	2	0	Prominin
COG2	PF06148.6	gi|379005326|ref|YP_005260998.1|	-	0.025	14.4	25.9	0.082	12.7	1.2	4.4	1	1	3	4	4	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Phage_GPO	PF05929.6	gi|379005326|ref|YP_005260998.1|	-	0.03	13.5	17.9	0.29	10.3	6.4	2.2	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
DUF3584	PF12128.3	gi|379005326|ref|YP_005260998.1|	-	0.034	11.4	25.8	0.065	10.5	17.9	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
YjcZ	PF13990.1	gi|379005326|ref|YP_005260998.1|	-	0.035	13.2	12.3	0.35	9.9	1.4	2.4	1	1	1	2	2	2	0	YjcZ-like	protein
DUF1351	PF07083.6	gi|379005326|ref|YP_005260998.1|	-	0.042	13.4	26.0	0.67	9.5	3.9	2.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1351)
DUF4407	PF14362.1	gi|379005326|ref|YP_005260998.1|	-	0.047	12.6	20.2	0.082	11.8	12.0	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Luteo_PO	PF04662.8	gi|379005326|ref|YP_005260998.1|	-	0.052	12.9	1.8	2.6	7.4	0.1	2.4	1	1	1	2	2	2	0	Luteovirus	P0	protein
PilJ	PF13675.1	gi|379005326|ref|YP_005260998.1|	-	0.057	13.7	7.1	5.7	7.2	0.8	3.3	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
LTXXQ	PF07813.7	gi|379005326|ref|YP_005260998.1|	-	0.058	13.8	16.7	22	5.6	1.5	3.7	1	1	1	2	2	1	0	LTXXQ	motif	family	protein
Atg14	PF10186.4	gi|379005326|ref|YP_005260998.1|	-	0.063	12.2	32.2	0.81	8.5	11.0	2.1	1	1	1	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
Tropomyosin_1	PF12718.2	gi|379005326|ref|YP_005260998.1|	-	0.065	13.0	31.6	0.65	9.8	16.3	3.3	1	1	2	3	3	3	0	Tropomyosin	like
DUF964	PF06133.6	gi|379005326|ref|YP_005260998.1|	-	0.067	13.2	23.4	0.25	11.3	5.8	3.4	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF964)
Nup54	PF13874.1	gi|379005326|ref|YP_005260998.1|	-	0.075	12.7	27.6	0.079	12.6	8.4	2.4	1	1	1	2	2	2	0	Nucleoporin	complex	subunit	54
GAS	PF13851.1	gi|379005326|ref|YP_005260998.1|	-	0.076	12.2	31.8	0.037	13.2	13.7	2.7	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
IFT57	PF10498.4	gi|379005326|ref|YP_005260998.1|	-	0.084	11.6	28.6	0.31	9.7	1.8	2.1	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
ARGLU	PF15346.1	gi|379005326|ref|YP_005260998.1|	-	0.091	12.5	33.8	0.58	9.9	15.8	3.4	1	1	1	2	2	2	0	Arginine	and	glutamate-rich	1
SF-assemblin	PF06705.6	gi|379005326|ref|YP_005260998.1|	-	0.093	11.8	32.7	0.11	11.5	21.3	2.0	1	1	0	1	1	1	0	SF-assemblin/beta	giardin
UvrB	PF12344.3	gi|379005326|ref|YP_005260998.1|	-	0.11	12.0	0.2	0.11	12.0	0.1	7.1	7	1	1	8	8	6	0	Ultra-violet	resistance	protein	B
TelA	PF05816.6	gi|379005326|ref|YP_005260998.1|	-	0.11	11.1	27.5	0.49	9.0	8.1	2.8	1	1	1	2	2	2	0	Toxic	anion	resistance	protein	(TelA)
TMF_TATA_bd	PF12325.3	gi|379005326|ref|YP_005260998.1|	-	0.11	12.1	32.4	0.96	9.1	12.2	2.6	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
Phasin	PF05597.6	gi|379005326|ref|YP_005260998.1|	-	0.12	12.1	22.3	0.09	12.5	5.7	3.6	1	1	3	4	4	4	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
CagA	PF03507.8	gi|379005326|ref|YP_005260998.1|	-	0.13	12.0	14.6	0.94	9.3	6.1	3.6	1	1	1	2	2	2	0	CagA	exotoxin
Mit_KHE1	PF10173.4	gi|379005326|ref|YP_005260998.1|	-	0.14	11.9	11.7	3.7	7.3	0.2	3.1	1	1	2	3	3	3	0	Mitochondrial	K+-H+	exchange-related
DUF3810	PF12725.2	gi|379005326|ref|YP_005260998.1|	-	0.16	10.8	13.7	0.082	11.7	3.0	2.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3810)
CAP_N	PF01213.14	gi|379005326|ref|YP_005260998.1|	-	0.18	11.0	6.9	0.83	8.8	4.4	2.0	1	1	1	2	2	2	0	Adenylate	cyclase	associated	(CAP)	N	terminal
Val_tRNA-synt_C	PF10458.4	gi|379005326|ref|YP_005260998.1|	-	0.19	11.8	0.5	0.19	11.8	0.3	4.6	1	1	4	5	5	1	0	Valyl	tRNA	synthetase	tRNA	binding	arm
DUF885	PF05960.6	gi|379005326|ref|YP_005260998.1|	-	0.19	10.8	10.1	0.29	10.2	7.0	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
DUF2317	PF10079.4	gi|379005326|ref|YP_005260998.1|	-	0.21	10.1	22.3	0.15	10.6	8.1	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
HSCB_C	PF07743.8	gi|379005326|ref|YP_005260998.1|	-	0.21	12.0	24.1	1e+02	3.4	2.3	5.1	1	1	1	2	2	1	0	HSCB	C-terminal	oligomerisation	domain
HHH_8	PF14716.1	gi|379005326|ref|YP_005260998.1|	-	0.21	11.7	3.0	15	5.8	0.1	3.6	2	1	1	3	3	3	0	Helix-hairpin-helix	domain
phiKZ_IP	PF12699.2	gi|379005326|ref|YP_005260998.1|	-	0.24	10.2	20.9	0.27	10.1	6.6	2.8	1	1	1	2	2	2	0	phiKZ-like	phage	internal	head	proteins
Mer2	PF09074.5	gi|379005326|ref|YP_005260998.1|	-	0.24	11.2	26.6	0.23	11.3	14.1	2.2	1	1	0	1	1	1	0	Mer2
DUF948	PF06103.6	gi|379005326|ref|YP_005260998.1|	-	0.27	11.1	24.0	0.21	11.4	3.7	3.9	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
Prefoldin	PF02996.12	gi|379005326|ref|YP_005260998.1|	-	0.27	10.8	30.2	1.1	8.8	2.5	4.4	1	1	3	5	5	5	0	Prefoldin	subunit
CDC37_N	PF03234.9	gi|379005326|ref|YP_005260998.1|	-	0.3	11.4	29.0	0.98	9.7	11.3	2.4	1	1	1	2	2	2	0	Cdc37	N	terminal	kinase	binding
Exonuc_VII_L	PF02601.10	gi|379005326|ref|YP_005260998.1|	-	0.3	10.2	23.7	0.16	11.1	6.7	2.1	1	1	1	2	2	2	0	Exonuclease	VII,	large	subunit
Fzo_mitofusin	PF04799.8	gi|379005326|ref|YP_005260998.1|	-	0.31	10.4	23.6	2.2	7.6	3.1	3.7	1	1	4	5	5	5	0	fzo-like	conserved	region
Syntaxin_2	PF14523.1	gi|379005326|ref|YP_005260998.1|	-	0.32	11.0	27.7	0.055	13.5	7.6	3.9	1	1	2	3	3	2	0	Syntaxin-like	protein
IncA	PF04156.9	gi|379005326|ref|YP_005260998.1|	-	0.32	10.5	27.2	6.3	6.3	1.1	3.3	1	1	1	2	2	2	0	IncA	protein
LUC7	PF03194.10	gi|379005326|ref|YP_005260998.1|	-	0.33	10.4	29.1	1.3	8.4	6.9	3.0	2	1	1	3	3	2	0	LUC7	N_terminus
Hemerythrin	PF01814.18	gi|379005326|ref|YP_005260998.1|	-	0.35	11.0	5.7	42	4.3	4.0	3.0	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
YlqD	PF11068.3	gi|379005326|ref|YP_005260998.1|	-	0.38	10.7	26.7	0.95	9.5	5.0	3.2	1	1	2	3	3	3	0	YlqD	protein
MIS13	PF08202.6	gi|379005326|ref|YP_005260998.1|	-	0.39	9.7	23.0	17	4.3	4.2	2.6	1	1	1	2	2	2	0	Mis12-Mtw1	protein	family
Transcrip_act	PF04949.8	gi|379005326|ref|YP_005260998.1|	-	0.4	10.3	27.1	1.9	8.0	7.7	2.6	1	1	1	2	2	2	0	Transcriptional	activator
DUF3552	PF12072.3	gi|379005326|ref|YP_005260998.1|	-	0.41	9.8	35.6	0.094	11.9	8.1	3.1	1	1	3	4	4	3	0	Domain	of	unknown	function	(DUF3552)
Peptidase_M75	PF09375.5	gi|379005326|ref|YP_005260998.1|	-	0.48	9.6	9.2	2.7	7.2	6.2	2.3	1	1	0	1	1	1	0	Imelysin
DSX_dimer	PF08828.5	gi|379005326|ref|YP_005260998.1|	-	0.48	9.9	22.4	1.7	8.2	0.7	6.8	2	1	6	8	8	6	0	Doublesex	dimerisation	domain
KfrA_N	PF11740.3	gi|379005326|ref|YP_005260998.1|	-	0.54	10.7	4.9	1.2	9.5	0.2	2.8	1	1	1	3	3	3	0	Plasmid	replication	region	DNA-binding	N-term
KIF1B	PF12423.3	gi|379005326|ref|YP_005260998.1|	-	0.54	10.3	4.0	6.4	6.8	0.8	2.7	2	0	0	2	2	2	0	Kinesin	protein	1B
DUF445	PF04286.7	gi|379005326|ref|YP_005260998.1|	-	0.58	9.6	23.5	0.77	9.2	6.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF445)
Gp-FAR-1	PF05823.7	gi|379005326|ref|YP_005260998.1|	-	0.58	10.1	18.0	0.87	9.5	0.9	3.7	1	1	3	4	4	4	0	Nematode	fatty	acid	retinoid	binding	protein	(Gp-FAR-1)
Peptidase_C6	PF00851.13	gi|379005326|ref|YP_005260998.1|	-	0.58	8.7	20.8	0.27	9.7	6.2	2.0	1	1	1	2	2	2	0	Helper	component	proteinase
MerR-DNA-bind	PF09278.6	gi|379005326|ref|YP_005260998.1|	-	0.58	10.5	23.9	1	9.8	1.0	5.5	1	1	4	5	5	5	0	MerR,	DNA	binding
KMP11	PF03037.11	gi|379005326|ref|YP_005260998.1|	-	0.61	10.7	16.6	5.3	7.6	2.5	3.1	1	1	2	3	3	3	0	Kinetoplastid	membrane	protein	11
GldM_N	PF12081.3	gi|379005326|ref|YP_005260998.1|	-	0.67	9.4	22.0	0.52	9.8	4.4	2.5	2	1	1	3	3	2	0	GldM	N-terminal	domain
V_ATPase_I	PF01496.14	gi|379005326|ref|YP_005260998.1|	-	0.69	7.7	25.6	0.5	8.1	8.4	2.7	1	1	2	3	3	3	0	V-type	ATPase	116kDa	subunit	family
DUF4404	PF14357.1	gi|379005326|ref|YP_005260998.1|	-	0.81	10.1	24.0	1.3	9.4	4.3	3.5	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4404)
DDE_Tnp_IS1	PF03400.8	gi|379005326|ref|YP_005260998.1|	-	0.82	9.7	4.6	0.88	9.6	0.5	2.7	1	1	2	3	3	2	0	IS1	transposase
Hemagglutinin	PF00509.13	gi|379005326|ref|YP_005260998.1|	-	0.9	7.6	24.5	0.055	11.6	3.3	3.2	1	1	2	3	3	3	0	Haemagglutinin
KxDL	PF10241.4	gi|379005326|ref|YP_005260998.1|	-	0.9	9.4	17.7	8.3	6.3	3.1	3.8	1	1	3	4	4	4	0	Uncharacterized	conserved	protein
DUF3422	PF11902.3	gi|379005326|ref|YP_005260998.1|	-	0.99	8.1	15.7	1.1	8.0	5.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3422)
7tm_7	PF08395.7	gi|379005326|ref|YP_005260998.1|	-	1	8.3	2.6	1.1	8.1	0.4	1.9	2	0	0	2	2	2	0	7tm	Chemosensory	receptor
DUF1484	PF07363.6	gi|379005326|ref|YP_005260998.1|	-	1	9.7	9.5	7.5	6.9	0.9	3.6	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1484)
DUF2450	PF10475.4	gi|379005326|ref|YP_005260998.1|	-	1.1	8.0	23.9	0.64	8.8	12.6	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	N-terminal	domain	(DUF2450)
Syntaxin	PF00804.20	gi|379005326|ref|YP_005260998.1|	-	1.2	9.3	35.8	12	6.0	6.2	3.8	1	1	2	3	3	3	0	Syntaxin
TMPIT	PF07851.8	gi|379005326|ref|YP_005260998.1|	-	1.2	8.1	23.9	0.77	8.7	7.1	2.5	1	1	2	3	3	3	0	TMPIT-like	protein
PEP-utilisers_N	PF05524.8	gi|379005326|ref|YP_005260998.1|	-	1.2	8.8	13.3	0.8	9.5	2.9	2.8	1	1	1	2	2	2	0	PEP-utilising	enzyme,	N-terminal
DUF2421	PF10334.4	gi|379005326|ref|YP_005260998.1|	-	1.3	8.6	6.0	1.1	8.7	0.4	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2421)
DUF883	PF05957.8	gi|379005326|ref|YP_005260998.1|	-	1.4	9.4	15.0	1.3	9.4	2.3	3.5	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Ax_dynein_light	PF10211.4	gi|379005326|ref|YP_005260998.1|	-	1.5	8.6	32.2	9.4	6.0	8.1	3.5	1	1	4	5	5	5	0	Axonemal	dynein	light	chain
DUF2365	PF10157.4	gi|379005326|ref|YP_005260998.1|	-	1.7	8.5	19.2	20	5.0	5.2	3.6	1	1	2	3	3	3	0	Uncharacterized	conserved	protein	(DUF2365)
DUF2543	PF10820.3	gi|379005326|ref|YP_005260998.1|	-	1.8	8.6	13.1	5.7	7.0	0.5	4.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF2543)
DUF4226	PF10774.4	gi|379005326|ref|YP_005260998.1|	-	1.9	8.5	10.1	9.6	6.2	2.7	2.8	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4226)
HAUS6_N	PF14661.1	gi|379005326|ref|YP_005260998.1|	-	2	7.7	20.3	5.5	6.2	3.8	2.4	1	1	1	2	2	2	0	HAUS	augmin-like	complex	subunit	6	N-terminus
Phage_Mu_Gam	PF07352.7	gi|379005326|ref|YP_005260998.1|	-	2	7.9	25.7	2.4	7.6	3.3	3.9	1	1	2	3	3	3	0	Bacteriophage	Mu	Gam	like	protein
DUF1993	PF09351.5	gi|379005326|ref|YP_005260998.1|	-	2.1	8.2	9.8	3.2	7.6	3.7	2.7	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF1993)
Lebercilin	PF15619.1	gi|379005326|ref|YP_005260998.1|	-	2.6	7.4	31.0	4.8	6.5	6.6	2.5	1	1	1	2	2	2	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
Carbpep_Y_N	PF05388.6	gi|379005326|ref|YP_005260998.1|	-	2.7	8.1	9.5	15	5.7	3.1	3.1	1	1	1	2	2	2	0	Carboxypeptidase	Y	pro-peptide
DUF972	PF06156.8	gi|379005326|ref|YP_005260998.1|	-	2.7	8.3	26.1	13	6.1	4.6	3.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF972)
Vps54	PF07928.7	gi|379005326|ref|YP_005260998.1|	-	2.7	8.1	9.5	6.3	6.9	0.4	3.3	1	1	1	3	3	3	0	Vps54-like	protein
IZUMO	PF15005.1	gi|379005326|ref|YP_005260998.1|	-	2.9	7.9	13.1	2.8	7.9	3.4	2.7	1	1	3	4	4	4	0	Izumo	sperm-egg	fusion
Fungal_trans_2	PF11951.3	gi|379005326|ref|YP_005260998.1|	-	2.9	6.4	15.8	1.6	7.2	3.7	2.2	1	1	1	2	2	2	0	Fungal	specific	transcription	factor	domain
DUF1020	PF06255.8	gi|379005326|ref|YP_005260998.1|	-	3	6.9	7.3	3.3	6.8	0.5	3.2	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1020)
PulS_OutS	PF09691.5	gi|379005326|ref|YP_005260998.1|	-	3	7.8	7.6	5.7	6.9	0.5	3.4	3	1	0	3	3	3	0	Bacterial	chaperone	lipoprotein	(PulS_OutS)
DUF1539	PF07560.6	gi|379005326|ref|YP_005260998.1|	-	3.4	7.5	16.8	8.1	6.3	1.4	3.2	1	1	1	2	2	2	0	Domain	of	Unknown	Function	(DUF1539)
GrpE	PF01025.14	gi|379005326|ref|YP_005260998.1|	-	3.4	7.1	25.6	2.6	7.5	7.3	2.3	1	1	1	2	2	2	0	GrpE
DUF2802	PF10975.3	gi|379005326|ref|YP_005260998.1|	-	3.6	7.4	14.7	7.3	6.4	0.4	5.4	1	1	3	4	4	4	0	Protein	of	unknown	function	(DUF2802)
DUF1525	PF07511.6	gi|379005326|ref|YP_005260998.1|	-	3.8	7.5	7.3	3.2	7.7	0.5	2.7	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1525)
DivIVA	PF05103.8	gi|379005326|ref|YP_005260998.1|	-	3.9	7.5	26.4	52	3.8	6.9	3.2	1	1	1	2	2	1	0	DivIVA	protein
DUF1043	PF06295.7	gi|379005326|ref|YP_005260998.1|	-	4.5	6.9	15.2	0.57	9.8	2.2	2.7	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1043)
DUF4446	PF14584.1	gi|379005326|ref|YP_005260998.1|	-	4.9	6.9	23.3	3.4	7.4	3.4	3.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF4446)
Fib_alpha	PF08702.5	gi|379005326|ref|YP_005260998.1|	-	5.7	7.0	30.6	11	6.1	5.3	2.9	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
DUF4351	PF14261.1	gi|379005326|ref|YP_005260998.1|	-	6.1	6.8	10.5	24	4.8	0.3	4.8	1	1	3	4	4	3	0	Domain	of	unknown	function	(DUF4351)
MSA-2c	PF12238.3	gi|379005326|ref|YP_005260998.1|	-	7.1	6.2	15.1	20	4.7	5.1	3.1	1	1	2	3	3	3	0	Merozoite	surface	antigen	2c
FUSC-like	PF12805.2	gi|379005326|ref|YP_005260998.1|	-	7.3	5.4	9.4	0.73	8.7	1.8	2.4	1	1	1	2	2	2	0	FUSC-like	inner	membrane	protein	yccS
Tht1	PF04163.7	gi|379005326|ref|YP_005260998.1|	-	7.3	4.8	22.2	20	3.3	15.3	1.7	1	1	0	1	1	1	0	Tht1-like	nuclear	fusion	protein
Med4	PF10018.4	gi|379005326|ref|YP_005260998.1|	-	8.8	5.6	26.7	2.2	7.6	2.9	3.2	1	1	2	3	3	3	0	Vitamin-D-receptor	interacting	Mediator	subunit	4
hDGE_amylase	PF14701.1	gi|379005326|ref|YP_005260998.1|	-	9.3	5.0	18.0	20	3.9	11.5	1.9	1	1	1	2	2	2	0	glucanotransferase	domain	of	human	glycogen	debranching	enzyme
Aminotran_1_2	PF00155.16	gi|379005327|ref|YP_005260999.1|	-	1.3e-34	119.7	0.0	1.6e-34	119.4	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
PQQ_3	PF13570.1	gi|379005328|ref|YP_005261000.1|	-	2.9e-06	27.3	20.4	0.084	13.1	2.1	6.0	5	1	1	6	6	6	3	PQQ-like	domain
PQQ_2	PF13360.1	gi|379005328|ref|YP_005261000.1|	-	3.2e-06	26.7	6.0	0.00092	18.7	0.1	3.3	2	1	1	3	3	3	3	PQQ-like	domain
Flg_new	PF09479.5	gi|379005328|ref|YP_005261000.1|	-	0.035	14.1	0.3	1.8	8.6	0.1	3.0	2	0	0	2	2	2	0	Listeria-Bacteroides	repeat	domain	(List_Bact_rpt)
PQQ	PF01011.16	gi|379005328|ref|YP_005261000.1|	-	0.056	12.9	1.2	0.56	9.8	0.2	3.2	2	0	0	2	2	2	0	PQQ	enzyme	repeat
GCR	PF02155.10	gi|379005328|ref|YP_005261000.1|	-	0.53	8.9	0.0	0.86	8.2	0.0	1.2	1	0	0	1	1	1	0	Glucocorticoid	receptor
DUF2029	PF09594.5	gi|379005331|ref|YP_005261003.1|	-	0.0022	17.5	16.4	0.0028	17.1	11.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2029)
PMT	PF02366.13	gi|379005331|ref|YP_005261003.1|	-	0.013	14.8	15.1	0.023	14.0	9.1	2.0	1	1	1	2	2	2	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
PMT_2	PF13231.1	gi|379005331|ref|YP_005261003.1|	-	2.5	7.9	14.7	9	6.1	10.2	1.9	1	1	0	1	1	1	0	Dolichyl-phosphate-mannose-protein	mannosyltransferase
Ndc1_Nup	PF09531.5	gi|379005332|ref|YP_005261004.1|	-	0.011	14.1	0.2	0.013	13.9	0.2	1.0	1	0	0	1	1	1	0	Nucleoporin	protein	Ndc1-Nup
DUF1049	PF06305.6	gi|379005332|ref|YP_005261004.1|	-	0.39	10.2	2.0	0.69	9.4	1.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1049)
Class_IIIsignal	PF04021.7	gi|379005333|ref|YP_005261005.1|	-	8.4e-08	31.6	3.2	8.4e-08	31.6	2.2	1.6	2	0	0	2	2	2	1	Class	III	signal	peptide
FtsX	PF02687.16	gi|379005333|ref|YP_005261005.1|	-	0.014	15.1	0.1	0.019	14.7	0.1	1.2	1	0	0	1	1	1	0	FtsX-like	permease	family
DUF3487	PF11990.3	gi|379005333|ref|YP_005261005.1|	-	0.055	12.8	0.6	0.079	12.3	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
MtrG	PF04210.8	gi|379005335|ref|YP_005261007.1|	-	0.062	12.9	0.0	0.16	11.6	0.0	1.7	2	0	0	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	G
PaREP1	PF05942.6	gi|379005337|ref|YP_005261009.1|	-	7.7e-30	103.1	1.1	1e-29	102.7	0.7	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379005337|ref|YP_005261009.1|	-	0.0049	16.7	1.3	0.0063	16.4	0.9	1.2	1	0	0	1	1	1	1	HEPN	domain
MCM	PF00493.18	gi|379005338|ref|YP_005261010.1|	-	3.8e-137	456.5	0.0	6.6e-137	455.7	0.0	1.4	1	0	0	1	1	1	1	MCM2/3/5	family
MCM_N	PF14551.1	gi|379005338|ref|YP_005261010.1|	-	4.9e-19	69.0	1.6	9.1e-19	68.1	0.4	2.0	2	0	0	2	2	1	1	MCM	N-terminal	domain
Mg_chelatase	PF01078.16	gi|379005338|ref|YP_005261010.1|	-	2.5e-10	39.8	0.1	1.2e-06	27.8	0.0	2.4	1	1	1	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|379005338|ref|YP_005261010.1|	-	2.9e-07	30.2	0.0	7.1e-07	29.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Zn-ribbon_8	PF09723.5	gi|379005338|ref|YP_005261010.1|	-	3.4e-07	30.1	0.7	6.3e-07	29.2	0.5	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
AAA_3	PF07726.6	gi|379005338|ref|YP_005261010.1|	-	5.8e-07	29.1	0.0	1.9e-06	27.4	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|379005338|ref|YP_005261010.1|	-	0.00095	18.6	0.1	0.0048	16.3	0.1	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA	PF00004.24	gi|379005338|ref|YP_005261010.1|	-	0.0012	19.0	0.0	0.0046	17.1	0.0	2.1	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
HypA	PF01155.14	gi|379005338|ref|YP_005261010.1|	-	0.019	14.6	0.2	0.044	13.4	0.2	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zinc_ribbon_2	PF13240.1	gi|379005338|ref|YP_005261010.1|	-	0.091	12.2	3.2	0.75	9.3	2.2	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
Elf1	PF05129.8	gi|379005338|ref|YP_005261010.1|	-	0.11	12.2	0.0	0.22	11.2	0.0	1.4	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
AAA_16	PF13191.1	gi|379005338|ref|YP_005261010.1|	-	0.13	12.2	1.3	0.53	10.2	0.1	2.6	2	1	0	2	2	2	0	AAA	ATPase	domain
zf-ribbon_3	PF13248.1	gi|379005338|ref|YP_005261010.1|	-	0.74	9.0	2.5	4.9	6.4	0.4	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|379005338|ref|YP_005261010.1|	-	1	9.3	4.6	4.7	7.1	3.2	2.0	1	1	0	1	1	1	0	Rubredoxin
DEAD	PF00270.24	gi|379005339|ref|YP_005261011.1|	-	1.1e-24	86.8	0.0	2.3e-24	85.7	0.0	1.5	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
HHH_5	PF14520.1	gi|379005339|ref|YP_005261011.1|	-	1.5e-15	57.1	3.9	3.5e-15	55.9	0.0	3.4	4	0	0	4	4	4	1	Helix-hairpin-helix	domain
Helicase_C	PF00271.26	gi|379005339|ref|YP_005261011.1|	-	4.4e-08	32.8	0.0	1e-07	31.6	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH	PF00633.18	gi|379005339|ref|YP_005261011.1|	-	1.6e-06	27.5	0.4	0.0011	18.5	0.0	3.4	3	0	0	3	3	3	1	Helix-hairpin-helix	motif
HHH_2	PF12826.2	gi|379005339|ref|YP_005261011.1|	-	5.6e-06	26.1	0.0	2.4e-05	24.1	0.0	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
ResIII	PF04851.10	gi|379005339|ref|YP_005261011.1|	-	0.0033	17.2	0.0	0.0053	16.6	0.0	1.3	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DNA_pol_lambd_f	PF10391.4	gi|379005339|ref|YP_005261011.1|	-	0.0051	16.3	0.0	0.014	14.9	0.0	1.7	1	0	0	1	1	1	1	Fingers	domain	of	DNA	polymerase	lambda
HHH_3	PF12836.2	gi|379005339|ref|YP_005261011.1|	-	0.016	15.1	0.0	0.04	13.8	0.0	1.6	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HhH-GPD	PF00730.20	gi|379005339|ref|YP_005261011.1|	-	0.034	14.4	0.1	0.14	12.4	0.0	2.0	2	0	0	2	2	2	0	HhH-GPD	superfamily	base	excision	DNA	repair	protein
IMS_HHH	PF11798.3	gi|379005339|ref|YP_005261011.1|	-	0.057	13.4	0.0	19	5.5	0.0	2.9	2	0	0	2	2	2	0	IMS	family	HHH	motif
SNF2_N	PF00176.18	gi|379005339|ref|YP_005261011.1|	-	0.059	12.1	0.0	0.091	11.5	0.0	1.2	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
PDT	PF00800.13	gi|379005340|ref|YP_005261012.1|	-	2.1e-34	118.6	0.0	2.9e-34	118.2	0.0	1.2	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|379005340|ref|YP_005261012.1|	-	3e-10	39.3	0.0	2.1e-09	36.6	0.0	2.2	2	0	0	2	2	2	1	ACT	domain
Hist_deacetyl	PF00850.14	gi|379005341|ref|YP_005261013.1|	-	4.7e-05	22.8	0.0	0.00057	19.2	0.0	2.0	2	0	0	2	2	2	2	Histone	deacetylase	domain
Acylphosphatase	PF00708.13	gi|379005342|ref|YP_005261014.1|	-	3.3e-15	55.9	0.0	3.6e-15	55.8	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
BLUF	PF04940.7	gi|379005342|ref|YP_005261014.1|	-	0.1	12.3	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Sensors	of	blue-light	using	FAD
Snf7	PF03357.16	gi|379005343|ref|YP_005261015.1|	-	0.00078	18.8	0.9	0.0046	16.3	0.3	2.0	1	1	1	2	2	2	1	Snf7
DUF4164	PF13747.1	gi|379005343|ref|YP_005261015.1|	-	0.0044	17.1	8.3	0.86	9.7	3.0	2.9	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4164)
KicB	PF03882.9	gi|379005343|ref|YP_005261015.1|	-	0.0088	14.7	0.5	0.0095	14.5	0.4	1.1	1	0	0	1	1	1	1	KicB	killing	factor
Filament	PF00038.16	gi|379005343|ref|YP_005261015.1|	-	0.013	15.0	5.5	0.15	11.4	3.8	2.0	1	1	0	1	1	1	0	Intermediate	filament	protein
U3snoRNP10	PF12397.3	gi|379005343|ref|YP_005261015.1|	-	0.027	14.4	0.4	0.062	13.2	0.1	1.6	1	1	1	2	2	2	0	U3	small	nucleolar	RNA-associated	protein	10
Hpt	PF01627.18	gi|379005343|ref|YP_005261015.1|	-	0.029	14.3	0.3	0.098	12.6	0.2	2.0	1	1	0	1	1	1	0	Hpt	domain
PilJ	PF13675.1	gi|379005343|ref|YP_005261015.1|	-	0.057	13.7	0.2	0.3	11.3	0.1	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
SPOB_a	PF14689.1	gi|379005343|ref|YP_005261015.1|	-	0.068	12.7	1.2	0.37	10.4	0.1	2.5	2	1	0	2	2	2	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
NPV_P10	PF05531.7	gi|379005343|ref|YP_005261015.1|	-	0.077	13.2	2.8	2.2	8.6	0.4	2.7	1	1	1	2	2	2	0	Nucleopolyhedrovirus	P10	protein
DUF4083	PF13314.1	gi|379005343|ref|YP_005261015.1|	-	0.078	12.8	0.4	0.32	10.8	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4083)
FUSC	PF04632.7	gi|379005343|ref|YP_005261015.1|	-	0.085	11.2	0.2	0.092	11.1	0.1	1.1	1	0	0	1	1	1	0	Fusaric	acid	resistance	protein	family
BLOC1_2	PF10046.4	gi|379005343|ref|YP_005261015.1|	-	0.096	12.8	3.3	0.78	9.9	0.8	2.6	1	1	1	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
BLYB	PF05289.6	gi|379005343|ref|YP_005261015.1|	-	0.1	12.4	0.4	7.5	6.4	0.0	2.6	1	1	1	2	2	2	0	Borrelia	hemolysin	accessory	protein
Turandot	PF07240.6	gi|379005343|ref|YP_005261015.1|	-	0.11	11.9	0.3	0.53	9.8	0.1	2.1	2	1	0	2	2	2	0	Stress-inducible	humoral	factor	Turandot
Apolipoprotein	PF01442.13	gi|379005343|ref|YP_005261015.1|	-	0.12	11.9	4.2	0.7	9.3	2.9	2.0	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
ApoLp-III	PF07464.6	gi|379005343|ref|YP_005261015.1|	-	0.13	12.3	1.5	0.26	11.3	0.2	1.9	1	1	0	1	1	1	0	Apolipophorin-III	precursor	(apoLp-III)
TBPIP	PF07106.8	gi|379005343|ref|YP_005261015.1|	-	0.13	11.7	1.5	0.18	11.3	0.5	1.5	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
CRAL_TRIO_N	PF03765.10	gi|379005343|ref|YP_005261015.1|	-	0.14	12.3	0.4	11	6.2	0.0	3.1	2	1	0	2	2	2	0	CRAL/TRIO,	N-terminal	domain
Herpes_UL92	PF03048.9	gi|379005343|ref|YP_005261015.1|	-	0.14	11.6	0.1	0.19	11.2	0.1	1.2	1	0	0	1	1	1	0	UL92	family
DUF883	PF05957.8	gi|379005343|ref|YP_005261015.1|	-	0.15	12.4	1.7	3.1	8.2	0.1	2.5	1	1	2	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
Baculo_PEP_C	PF04513.7	gi|379005343|ref|YP_005261015.1|	-	0.16	11.7	0.6	0.91	9.3	0.4	2.2	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Hemerythrin	PF01814.18	gi|379005343|ref|YP_005261015.1|	-	0.17	12.0	0.8	0.26	11.4	0.6	1.4	1	1	0	1	1	1	0	Hemerythrin	HHE	cation	binding	domain
HrpB7	PF09486.5	gi|379005343|ref|YP_005261015.1|	-	0.17	11.8	2.2	0.32	10.8	0.3	2.2	1	1	2	3	3	3	0	Bacterial	type	III	secretion	protein	(HrpB7)
HisKA	PF00512.20	gi|379005343|ref|YP_005261015.1|	-	0.26	11.2	2.1	0.61	10.1	0.3	2.2	1	1	1	2	2	2	0	His	Kinase	A	(phospho-acceptor)	domain
Phe_tRNA-synt_N	PF02912.13	gi|379005343|ref|YP_005261015.1|	-	0.44	10.2	2.3	0.66	9.7	0.0	2.2	3	0	0	3	3	3	0	Aminoacyl	tRNA	synthetase	class	II,	N-terminal	domain
PEP-utilisers_N	PF05524.8	gi|379005343|ref|YP_005261015.1|	-	0.59	9.9	4.9	4.4	7.1	1.1	2.2	1	1	1	2	2	2	0	PEP-utilising	enzyme,	N-terminal
Exonuc_VII_S	PF02609.11	gi|379005343|ref|YP_005261015.1|	-	0.89	9.3	4.6	4.1	7.2	0.1	3.5	3	1	0	3	3	3	0	Exonuclease	VII	small	subunit
MerR-DNA-bind	PF09278.6	gi|379005343|ref|YP_005261015.1|	-	1.6	9.1	6.8	1.1	9.7	1.6	2.7	2	2	0	2	2	2	0	MerR,	DNA	binding
DUF2746	PF10874.3	gi|379005343|ref|YP_005261015.1|	-	2.2	8.5	5.1	29	4.9	0.4	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2746)
YvrJ	PF12841.2	gi|379005343|ref|YP_005261015.1|	-	2.4	7.4	5.5	4.9	6.5	0.1	3.5	4	1	0	4	4	4	0	YvrJ	protein	family
Peptidase_M28	PF04389.12	gi|379005344|ref|YP_005261016.1|	-	3.7e-07	30.0	0.0	5.5e-07	29.4	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M28
CTP_transf_2	PF01467.21	gi|379005345|ref|YP_005261017.1|	-	3.6e-08	33.6	0.0	1.5e-07	31.5	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase
FAD_syn	PF06574.7	gi|379005345|ref|YP_005261017.1|	-	0.012	15.2	0.0	0.03	13.9	0.0	1.7	2	0	0	2	2	2	0	FAD	synthetase
Thg1	PF04446.7	gi|379005346|ref|YP_005261018.1|	-	3e-20	72.2	0.0	4.4e-20	71.6	0.0	1.2	1	0	0	1	1	1	1	tRNAHis	guanylyltransferase
Peptidase_M32	PF02074.10	gi|379005347|ref|YP_005261019.1|	-	4.7e-177	589.5	4.8	5.2e-177	589.3	3.4	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
TrmB	PF01978.14	gi|379005347|ref|YP_005261019.1|	-	0.021	14.4	0.2	0.33	10.6	0.0	2.6	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
AAA_17	PF13207.1	gi|379005348|ref|YP_005261020.1|	-	0.0087	16.8	0.0	0.014	16.1	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
NB-ARC	PF00931.17	gi|379005348|ref|YP_005261020.1|	-	0.12	11.1	0.0	0.2	10.4	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
IF2_N	PF04760.10	gi|379005349|ref|YP_005261021.1|	-	0.0075	15.9	0.3	0.16	11.6	0.0	2.4	2	0	0	2	2	2	1	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_19	PF12844.2	gi|379005349|ref|YP_005261021.1|	-	0.13	12.3	0.1	4.3	7.4	0.0	2.6	2	1	1	3	3	3	0	Helix-turn-helix	domain
HhH-GPD	PF00730.20	gi|379005350|ref|YP_005261022.1|	-	9.1e-25	87.0	0.0	1.2e-24	86.6	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|379005350|ref|YP_005261022.1|	-	1.6e-06	27.4	0.1	4.6e-06	26.0	0.1	1.7	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|379005350|ref|YP_005261022.1|	-	2.6e-05	24.1	7.7	5e-05	23.3	5.4	1.5	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
IMS_HHH	PF11798.3	gi|379005350|ref|YP_005261022.1|	-	0.0026	17.6	0.3	0.11	12.6	0.0	2.8	2	0	0	2	2	2	1	IMS	family	HHH	motif
HHH_5	PF14520.1	gi|379005350|ref|YP_005261022.1|	-	0.029	14.5	0.2	0.063	13.4	0.1	1.6	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
DrsE_2	PF13686.1	gi|379005351|ref|YP_005261023.1|	-	5.1e-10	39.3	0.1	1.6e-08	34.4	0.0	2.0	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|379005351|ref|YP_005261023.1|	-	7.5e-08	32.4	0.0	9.8e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	DsrE/DsrF-like	family
TusA	PF01206.12	gi|379005352|ref|YP_005261024.1|	-	3e-05	23.5	0.0	3.6e-05	23.2	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
AhpC-TSA	PF00578.16	gi|379005353|ref|YP_005261025.1|	-	2.3e-29	101.5	0.0	2.8e-29	101.3	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|379005353|ref|YP_005261025.1|	-	5e-21	74.7	0.0	5.6e-21	74.6	0.0	1.0	1	0	0	1	1	1	1	Redoxin
AhpC-TSA_2	PF13911.1	gi|379005353|ref|YP_005261025.1|	-	0.00012	21.9	0.0	0.00015	21.6	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
DUF3801	PF12687.2	gi|379005353|ref|YP_005261025.1|	-	0.00076	19.1	0.1	0.0014	18.2	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3801)
DUF899	PF05988.7	gi|379005353|ref|YP_005261025.1|	-	0.0035	16.7	0.0	0.0041	16.5	0.0	1.1	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
Thioredoxin_8	PF13905.1	gi|379005353|ref|YP_005261025.1|	-	0.0073	16.3	0.0	0.012	15.7	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
DUF2551	PF10826.3	gi|379005353|ref|YP_005261025.1|	-	0.06	13.2	0.0	0.25	11.2	0.0	1.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2551)
EamA	PF00892.15	gi|379005354|ref|YP_005261026.1|	-	7e-18	64.8	38.3	3.1e-11	43.3	9.6	3.2	3	1	0	3	3	3	2	EamA-like	transporter	family
MoCF_biosynth	PF00994.19	gi|379005355|ref|YP_005261027.1|	-	1.8e-40	137.6	0.0	2.9e-40	136.9	0.0	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
DpnD-PcfM	PF14207.1	gi|379005355|ref|YP_005261027.1|	-	0.024	14.4	0.0	0.067	12.9	0.0	1.8	1	0	0	1	1	1	0	DpnD/PcfM-like	protein
AAA	PF00004.24	gi|379005357|ref|YP_005261029.1|	-	0.00064	19.9	0.0	0.00087	19.4	0.0	1.3	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.16	gi|379005357|ref|YP_005261029.1|	-	0.0014	17.8	0.0	0.0019	17.3	0.0	1.2	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_16	PF13191.1	gi|379005357|ref|YP_005261029.1|	-	0.0018	18.2	0.0	0.0028	17.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|379005357|ref|YP_005261029.1|	-	0.0026	17.4	0.0	0.0044	16.7	0.0	1.3	1	0	0	1	1	1	1	Part	of	AAA	domain
ATP_bind_1	PF03029.12	gi|379005357|ref|YP_005261029.1|	-	0.003	17.1	0.0	0.0042	16.6	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_33	PF13671.1	gi|379005357|ref|YP_005261029.1|	-	0.0063	16.3	0.0	0.0098	15.7	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|379005357|ref|YP_005261029.1|	-	0.0071	15.7	0.0	0.01	15.2	0.0	1.2	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|379005357|ref|YP_005261029.1|	-	0.0079	17.0	0.0	0.012	16.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|379005357|ref|YP_005261029.1|	-	0.011	14.8	0.0	0.016	14.3	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
AAA_32	PF13654.1	gi|379005357|ref|YP_005261029.1|	-	0.014	14.1	0.0	0.018	13.6	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379005357|ref|YP_005261029.1|	-	0.014	15.1	0.1	0.023	14.3	0.1	1.5	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|379005357|ref|YP_005261029.1|	-	0.016	14.9	0.0	0.039	13.6	0.0	1.6	1	1	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_10	PF12846.2	gi|379005357|ref|YP_005261029.1|	-	0.018	14.5	0.0	0.021	14.2	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
SRP54	PF00448.17	gi|379005357|ref|YP_005261029.1|	-	0.018	14.4	0.0	0.025	14.0	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.1	gi|379005357|ref|YP_005261029.1|	-	0.047	13.2	0.0	0.068	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379005357|ref|YP_005261029.1|	-	0.049	13.7	0.1	0.35	11.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|379005357|ref|YP_005261029.1|	-	0.075	12.5	0.0	0.21	11.1	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|379005357|ref|YP_005261029.1|	-	0.092	12.1	0.0	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
ABC_tran	PF00005.22	gi|379005357|ref|YP_005261029.1|	-	0.17	12.1	0.0	0.3	11.3	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
GFO_IDH_MocA	PF01408.17	gi|379005358|ref|YP_005261030.1|	-	4.2e-16	59.5	0.0	6.7e-16	58.8	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.12	gi|379005358|ref|YP_005261030.1|	-	3.1e-07	30.1	0.1	5.8e-06	26.0	0.0	2.2	2	0	0	2	2	2	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.19	gi|379005358|ref|YP_005261030.1|	-	0.0017	18.6	0.0	0.0074	16.5	0.0	2.0	3	0	0	3	3	3	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
CoA_binding	PF02629.14	gi|379005358|ref|YP_005261030.1|	-	0.014	15.9	0.0	0.026	15.0	0.0	1.5	1	0	0	1	1	1	0	CoA	binding	domain
VIT1	PF01988.14	gi|379005360|ref|YP_005261032.1|	-	2.2	7.7	22.4	1	8.7	2.4	2.3	1	1	1	2	2	2	0	VIT	family
DUF211	PF02680.9	gi|379005361|ref|YP_005261033.1|	-	1.4e-27	95.3	7.6	1.6e-27	95.1	5.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
HMA	PF00403.21	gi|379005361|ref|YP_005261033.1|	-	0.13	12.3	4.1	0.96	9.6	2.8	2.2	1	1	0	1	1	1	0	Heavy-metal-associated	domain
TruB_N	PF01509.13	gi|379005362|ref|YP_005261034.1|	-	6.2e-25	88.1	0.1	2.4e-21	76.4	0.1	3.1	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
PUA	PF01472.15	gi|379005362|ref|YP_005261034.1|	-	1.2e-20	72.9	0.9	1.8e-20	72.4	0.1	1.7	2	0	0	2	2	2	1	PUA	domain
DKCLD	PF08068.7	gi|379005362|ref|YP_005261034.1|	-	2.5e-19	68.9	0.1	6.2e-19	67.6	0.1	1.7	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
Ribosomal_L14e	PF01929.12	gi|379005363|ref|YP_005261035.1|	-	8.4e-06	26.0	0.3	2.3e-05	24.6	0.0	1.8	2	1	1	3	3	3	1	Ribosomal	protein	L14
KOW	PF00467.24	gi|379005363|ref|YP_005261035.1|	-	0.04	13.6	4.6	0.04	13.6	3.2	2.3	3	0	0	3	3	3	0	KOW	motif
CxxCxxCC	PF03692.10	gi|379005364|ref|YP_005261036.1|	-	5.9e-08	33.0	0.7	8.3e-08	32.6	0.5	1.2	1	0	0	1	1	1	1	Putative	zinc-	or	iron-chelating	domain
DUF3109	PF11307.3	gi|379005364|ref|YP_005261036.1|	-	0.081	12.4	2.1	0.54	9.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3109)
Fer4_7	PF12838.2	gi|379005365|ref|YP_005261037.1|	-	8.4e-05	22.8	10.5	0.049	14.0	2.8	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379005365|ref|YP_005261037.1|	-	9.3e-05	22.6	11.1	0.00021	21.5	7.7	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005365|ref|YP_005261037.1|	-	0.00027	20.6	9.7	0.00055	19.6	6.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379005365|ref|YP_005261037.1|	-	0.00031	20.5	13.5	0.071	13.0	2.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379005365|ref|YP_005261037.1|	-	0.0006	19.2	14.8	0.00077	18.9	1.7	2.7	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379005365|ref|YP_005261037.1|	-	0.016	15.4	6.9	0.9	9.9	0.7	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379005365|ref|YP_005261037.1|	-	0.019	14.8	3.0	0.019	14.8	2.1	2.7	3	0	0	3	3	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379005365|ref|YP_005261037.1|	-	0.035	13.9	8.6	0.076	12.8	6.0	1.6	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379005365|ref|YP_005261037.1|	-	0.39	10.7	11.6	2.2	8.3	8.1	2.1	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|379005365|ref|YP_005261037.1|	-	0.39	11.3	8.1	0.78	10.3	1.5	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|379005365|ref|YP_005261037.1|	-	1.3	9.5	13.8	2.6	8.6	2.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379005365|ref|YP_005261037.1|	-	3	8.6	17.5	3.2	8.5	3.9	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|379005365|ref|YP_005261037.1|	-	5	7.6	9.2	2.9	8.3	1.8	2.5	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
OsmC	PF02566.14	gi|379005366|ref|YP_005261038.1|	-	0.008	16.3	0.3	0.89	9.7	0.2	2.3	1	1	0	1	1	1	1	OsmC-like	protein
PH_2	PF08458.5	gi|379005366|ref|YP_005261038.1|	-	0.034	14.0	0.1	0.047	13.6	0.0	1.2	1	0	0	1	1	1	0	Plant	pleckstrin	homology-like	region
MobB	PF03205.9	gi|379005367|ref|YP_005261039.1|	-	1.4e-10	40.9	0.0	2.5e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
CbiA	PF01656.18	gi|379005367|ref|YP_005261039.1|	-	0.0003	20.2	0.0	0.00047	19.6	0.0	1.4	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_10	PF12846.2	gi|379005367|ref|YP_005261039.1|	-	0.00097	18.6	0.0	0.0014	18.1	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
MMR_HSR1	PF01926.18	gi|379005367|ref|YP_005261039.1|	-	0.058	13.3	0.0	0.11	12.4	0.0	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_29	PF13555.1	gi|379005367|ref|YP_005261039.1|	-	0.059	12.9	0.0	0.14	11.7	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|379005367|ref|YP_005261039.1|	-	0.064	12.6	0.1	0.16	11.3	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_22	PF13401.1	gi|379005367|ref|YP_005261039.1|	-	0.067	13.3	0.0	0.11	12.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
SRP54	PF00448.17	gi|379005367|ref|YP_005261039.1|	-	0.096	12.1	0.1	0.17	11.3	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
ABC_tran	PF00005.22	gi|379005367|ref|YP_005261039.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
TrwB_AAD_bind	PF10412.4	gi|379005367|ref|YP_005261039.1|	-	0.22	10.1	0.0	0.3	9.6	0.0	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
NfeD	PF01957.13	gi|379005368|ref|YP_005261040.1|	-	4.3e-08	33.4	0.3	5.5e-08	33.0	0.2	1.2	1	0	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
TBPIP	PF07106.8	gi|379005369|ref|YP_005261041.1|	-	0.00026	20.5	11.2	0.022	14.3	3.2	3.0	1	1	2	3	3	3	2	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
AAA_13	PF13166.1	gi|379005369|ref|YP_005261041.1|	-	0.0018	16.8	8.2	0.0023	16.4	5.7	1.0	1	0	0	1	1	1	1	AAA	domain
MscS_porin	PF12795.2	gi|379005369|ref|YP_005261041.1|	-	0.0032	16.8	7.2	1.2	8.3	5.2	2.8	1	1	1	2	2	2	1	Mechanosensitive	ion	channel	porin	domain
HemX	PF04375.9	gi|379005369|ref|YP_005261041.1|	-	0.0033	16.0	1.6	0.0039	15.8	1.1	1.3	1	0	0	1	1	1	1	HemX
ADIP	PF11559.3	gi|379005369|ref|YP_005261041.1|	-	0.0049	16.7	5.6	2.5	7.9	0.1	3.1	1	1	2	3	3	3	1	Afadin-	and	alpha	-actinin-Binding
PilJ	PF13675.1	gi|379005369|ref|YP_005261041.1|	-	0.005	17.1	2.1	1.3	9.3	0.4	3.0	1	1	3	4	4	4	1	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
K-box	PF01486.12	gi|379005369|ref|YP_005261041.1|	-	0.0076	16.0	7.9	0.43	10.4	0.9	3.6	2	1	1	3	3	3	1	K-box	region
Spectrin	PF00435.16	gi|379005369|ref|YP_005261041.1|	-	0.0086	16.3	7.1	2.5	8.4	0.1	3.1	2	1	1	3	3	3	1	Spectrin	repeat
DUF342	PF03961.8	gi|379005369|ref|YP_005261041.1|	-	0.01	14.3	5.2	0.015	13.7	3.6	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
CorA	PF01544.13	gi|379005369|ref|YP_005261041.1|	-	0.014	14.4	3.3	0.013	14.5	1.5	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
Laminin_II	PF06009.7	gi|379005369|ref|YP_005261041.1|	-	0.047	13.4	2.6	1.1	8.9	0.2	2.5	2	1	0	2	2	2	0	Laminin	Domain	II
WXG100	PF06013.7	gi|379005369|ref|YP_005261041.1|	-	0.054	13.5	3.2	0.66	10.0	0.1	3.1	2	1	1	3	3	3	0	Proteins	of	100	residues	with	WXG
Rootletin	PF15035.1	gi|379005369|ref|YP_005261041.1|	-	0.056	13.4	5.7	0.15	12.0	1.0	2.3	1	1	0	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
Uds1	PF15456.1	gi|379005369|ref|YP_005261041.1|	-	0.056	13.4	8.7	0.12	12.4	3.6	2.9	2	1	0	2	2	2	0	Up-regulated	During	Septation
OmpH	PF03938.9	gi|379005369|ref|YP_005261041.1|	-	0.057	13.3	4.7	0.086	12.7	3.2	1.4	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Syntaxin_2	PF14523.1	gi|379005369|ref|YP_005261041.1|	-	0.062	13.3	5.1	0.085	12.8	2.4	2.2	1	1	1	2	2	2	0	Syntaxin-like	protein
Nsp1_C	PF05064.8	gi|379005369|ref|YP_005261041.1|	-	0.078	12.6	10.8	0.099	12.2	5.3	2.5	2	1	0	2	2	2	0	Nsp1-like	C-terminal	region
Cep57_CLD_2	PF14197.1	gi|379005369|ref|YP_005261041.1|	-	0.081	12.8	5.6	0.46	10.4	0.2	3.2	3	0	0	3	3	3	0	Centrosome	localisation	domain	of	PPC89
COG5	PF10392.4	gi|379005369|ref|YP_005261041.1|	-	0.091	12.7	2.4	0.18	11.7	1.2	1.8	1	1	1	2	2	1	0	Golgi	transport	complex	subunit	5
EMP24_GP25L	PF01105.19	gi|379005369|ref|YP_005261041.1|	-	0.099	12.3	3.5	2.4	7.8	0.2	2.6	1	1	2	3	3	3	0	emp24/gp25L/p24	family/GOLD
DUF4618	PF15397.1	gi|379005369|ref|YP_005261041.1|	-	0.099	11.9	5.5	0.52	9.6	2.9	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4618)
V-SNARE	PF05008.10	gi|379005369|ref|YP_005261041.1|	-	0.1	12.7	8.5	0.7	10.0	0.4	3.8	3	1	0	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
MbeD_MobD	PF04899.7	gi|379005369|ref|YP_005261041.1|	-	0.12	12.2	0.6	1.6	8.6	0.1	2.3	2	0	0	2	2	2	0	MbeD/MobD	like
ALIX_LYPXL_bnd	PF13949.1	gi|379005369|ref|YP_005261041.1|	-	0.12	11.2	9.5	0.22	10.4	1.9	2.5	1	1	1	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
Syntaxin	PF00804.20	gi|379005369|ref|YP_005261041.1|	-	0.26	11.4	8.9	2	8.6	5.2	2.7	1	1	1	2	2	2	0	Syntaxin
Snapin_Pallidin	PF14712.1	gi|379005369|ref|YP_005261041.1|	-	0.36	11.1	5.8	0.86	9.9	2.2	2.6	2	1	1	3	3	2	0	Snapin/Pallidin
PspA_IM30	PF04012.7	gi|379005369|ref|YP_005261041.1|	-	0.39	10.0	8.6	1	8.6	6.0	2.0	1	1	0	1	1	1	0	PspA/IM30	family
Atg14	PF10186.4	gi|379005369|ref|YP_005261041.1|	-	0.4	9.5	6.5	0.28	10.0	3.4	1.5	1	1	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
THOC7	PF05615.8	gi|379005369|ref|YP_005261041.1|	-	0.41	10.9	8.0	0.36	11.0	1.7	2.7	1	1	2	3	3	3	0	Tho	complex	subunit	7
CENP-F_leu_zip	PF10473.4	gi|379005369|ref|YP_005261041.1|	-	0.63	9.8	11.5	0.21	11.4	5.1	2.2	1	1	2	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
BMFP	PF04380.8	gi|379005369|ref|YP_005261041.1|	-	0.69	10.0	4.2	32	4.7	1.1	3.1	2	2	0	2	2	2	0	Membrane	fusogenic	activity
NPV_P10	PF05531.7	gi|379005369|ref|YP_005261041.1|	-	0.73	10.1	4.0	3	8.1	1.1	2.8	2	1	1	3	3	2	0	Nucleopolyhedrovirus	P10	protein
Uso1_p115_C	PF04871.8	gi|379005369|ref|YP_005261041.1|	-	0.74	9.7	11.3	0.12	12.3	5.1	1.6	2	0	0	2	2	1	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
LXG	PF04740.7	gi|379005369|ref|YP_005261041.1|	-	0.74	9.5	6.0	0.29	10.8	1.3	2.0	2	0	0	2	2	2	0	LXG	domain	of	WXG	superfamily
DivIC	PF04977.10	gi|379005369|ref|YP_005261041.1|	-	0.75	9.3	12.9	1.2	8.6	0.4	3.5	1	1	2	3	3	3	0	Septum	formation	initiator
IncA	PF04156.9	gi|379005369|ref|YP_005261041.1|	-	0.81	9.2	9.6	6.5	6.2	6.6	2.2	1	1	0	1	1	1	0	IncA	protein
AKNA	PF12443.3	gi|379005369|ref|YP_005261041.1|	-	1.1	9.2	4.7	8.9	6.3	0.1	3.0	1	1	1	3	3	3	0	AT-hook-containing	transcription	factor
Transcrip_act	PF04949.8	gi|379005369|ref|YP_005261041.1|	-	1.1	8.8	6.9	1.6	8.3	4.2	1.8	1	1	1	2	2	2	0	Transcriptional	activator
Med9	PF07544.8	gi|379005369|ref|YP_005261041.1|	-	1.2	8.9	5.7	17	5.2	2.4	2.7	1	1	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Fib_alpha	PF08702.5	gi|379005369|ref|YP_005261041.1|	-	1.4	9.0	6.0	2.1	8.4	2.3	2.4	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
RRF_GI	PF12614.3	gi|379005369|ref|YP_005261041.1|	-	1.4	8.7	5.0	4.6	7.0	2.2	2.2	1	1	1	2	2	2	0	Ribosome	recycling	factor
APG6	PF04111.7	gi|379005369|ref|YP_005261041.1|	-	1.5	7.8	7.6	0.56	9.2	3.4	1.5	1	1	0	1	1	1	0	Autophagy	protein	Apg6
DUF3373	PF11853.3	gi|379005369|ref|YP_005261041.1|	-	1.6	7.1	4.8	8	4.8	3.4	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3373)
DUF1664	PF07889.7	gi|379005369|ref|YP_005261041.1|	-	1.6	8.5	6.3	0.78	9.5	1.3	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
SHOCT	PF09851.4	gi|379005369|ref|YP_005261041.1|	-	1.9	8.1	8.5	8.6	5.9	1.0	3.6	3	0	0	3	3	3	0	Short	C-terminal	domain
TMF_DNA_bd	PF12329.3	gi|379005369|ref|YP_005261041.1|	-	1.9	8.3	13.0	1.9	8.3	3.3	3.6	3	1	1	4	4	4	0	TATA	element	modulatory	factor	1	DNA	binding
FlxA	PF14282.1	gi|379005369|ref|YP_005261041.1|	-	1.9	8.4	9.2	4	7.4	0.6	3.0	2	1	1	3	3	3	0	FlxA-like	protein
Syntaxin-6_N	PF09177.6	gi|379005369|ref|YP_005261041.1|	-	2.4	8.6	7.7	1.7	9.0	1.6	2.7	1	1	1	3	3	3	0	Syntaxin	6,	N-terminal
Enkurin	PF13864.1	gi|379005369|ref|YP_005261041.1|	-	2.7	8.2	8.7	0.19	11.9	1.1	2.5	3	1	0	3	3	2	0	Calmodulin-binding
Cortex-I_coil	PF09304.5	gi|379005369|ref|YP_005261041.1|	-	2.9	7.9	13.1	9.3	6.3	6.5	2.7	1	1	2	3	3	3	0	Cortexillin	I,	coiled	coil
DUF4337	PF14235.1	gi|379005369|ref|YP_005261041.1|	-	6.1	6.6	6.7	1.9	8.3	1.4	2.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4337)
DUF883	PF05957.8	gi|379005369|ref|YP_005261041.1|	-	8	6.9	6.5	5.6	7.4	1.5	2.5	2	1	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF883)
TPR_MLP1_2	PF07926.7	gi|379005369|ref|YP_005261041.1|	-	8.6	6.1	11.7	3.2	7.4	0.6	2.6	1	1	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
SHOCT	PF09851.4	gi|379005370|ref|YP_005261042.1|	-	0.0015	17.8	4.3	0.0015	17.8	3.0	3.4	4	0	0	4	4	4	1	Short	C-terminal	domain
PRESAN	PF09687.5	gi|379005370|ref|YP_005261042.1|	-	0.029	14.4	1.3	0.3	11.1	0.1	2.2	2	0	0	2	2	2	0	Plasmodium	RESA	N-terminal
UPF0240	PF06784.6	gi|379005370|ref|YP_005261042.1|	-	0.11	12.1	0.7	0.32	10.6	0.4	1.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0240)
ApoLp-III	PF07464.6	gi|379005370|ref|YP_005261042.1|	-	0.14	12.1	1.1	1.8	8.5	0.0	2.4	1	1	0	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
AAA_23	PF13476.1	gi|379005370|ref|YP_005261042.1|	-	0.21	11.8	2.9	0.23	11.7	2.0	1.2	1	0	0	1	1	1	0	AAA	domain
Med28	PF11594.3	gi|379005370|ref|YP_005261042.1|	-	0.22	11.8	1.4	0.43	10.8	0.1	2.0	1	1	1	2	2	2	0	Mediator	complex	subunit	28
FliJ	PF02050.11	gi|379005370|ref|YP_005261042.1|	-	0.32	11.0	5.7	15	5.6	0.0	3.1	2	1	0	2	2	2	0	Flagellar	FliJ	protein
GvpG	PF05120.7	gi|379005370|ref|YP_005261042.1|	-	0.44	10.3	4.3	0.27	11.0	0.2	2.2	2	0	0	2	2	2	0	Gas	vesicle	protein	G
CorA	PF01544.13	gi|379005370|ref|YP_005261042.1|	-	0.93	8.4	3.8	0.71	8.8	0.8	1.7	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
IncA	PF04156.9	gi|379005370|ref|YP_005261042.1|	-	1.3	8.5	9.2	2.6	7.6	6.4	1.5	1	1	0	1	1	1	0	IncA	protein
DMAP_binding	PF06464.6	gi|379005370|ref|YP_005261042.1|	-	3.7	8.1	7.4	1.7	9.2	2.4	2.1	2	0	0	2	2	2	0	DMAP1-binding	Domain
DUF4463	PF14703.1	gi|379005370|ref|YP_005261042.1|	-	8.4	6.9	7.9	2.5	8.6	0.0	3.2	3	1	0	3	3	3	0	Domain	of	unknown	function	(DUF4463)
NTP_transferase	PF00483.18	gi|379005371|ref|YP_005261043.1|	-	4.7e-23	81.7	0.0	5.9e-23	81.4	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|379005371|ref|YP_005261043.1|	-	1.8e-08	34.5	0.0	3.4e-08	33.7	0.0	1.3	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
INT_SG_DDX_CT_C	PF15300.1	gi|379005372|ref|YP_005261044.1|	-	0.073	12.5	0.3	0.12	11.7	0.2	1.3	1	0	0	1	1	1	0	INTS6/SAGE1/DDX26B/CT45	C-terminus
PfkB	PF00294.19	gi|379005373|ref|YP_005261045.1|	-	1.2e-51	175.7	1.7	1.3e-51	175.5	1.2	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|379005373|ref|YP_005261045.1|	-	0.0003	20.0	0.2	0.00044	19.5	0.1	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Enoyl_reductase	PF12241.3	gi|379005374|ref|YP_005261046.1|	-	0.018	14.0	0.2	0.028	13.4	0.2	1.2	1	0	0	1	1	1	0	Trans-2-enoyl-CoA	reductase	catalytic	region
DUF3196	PF11428.3	gi|379005374|ref|YP_005261046.1|	-	0.095	11.9	0.2	0.14	11.4	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3196)
HCR	PF07111.7	gi|379005374|ref|YP_005261046.1|	-	0.21	9.5	2.2	0.81	7.6	0.1	2.0	2	0	0	2	2	2	0	Alpha	helical	coiled-coil	rod	protein	(HCR)
DNA_ligase_A_M	PF01068.16	gi|379005375|ref|YP_005261047.1|	-	3.4e-60	202.8	0.0	5.3e-60	202.2	0.0	1.3	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|379005375|ref|YP_005261047.1|	-	3.4e-51	173.5	0.1	2.5e-50	170.7	0.1	2.0	1	1	1	2	2	2	2	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|379005375|ref|YP_005261047.1|	-	1.9e-24	85.8	0.0	2e-23	82.5	0.0	2.3	2	0	0	2	2	2	1	ATP	dependent	DNA	ligase	C	terminal	region
DNA_ligase_OB_2	PF14743.1	gi|379005375|ref|YP_005261047.1|	-	0.0065	16.1	0.1	0.021	14.4	0.0	2.0	2	0	0	2	2	2	1	DNA	ligase	OB-like	domain
CYTH	PF01928.16	gi|379005376|ref|YP_005261048.1|	-	2.1e-36	125.3	2.1	2.3e-36	125.2	1.4	1.0	1	0	0	1	1	1	1	CYTH	domain
Glyoxalase_5	PF14696.1	gi|379005376|ref|YP_005261048.1|	-	0.0041	17.0	0.0	0.0091	15.9	0.0	1.6	2	0	0	2	2	2	1	Hydroxyphenylpyruvate	dioxygenase,	HPPD,	N-terminal
RuvA_C	PF07499.8	gi|379005376|ref|YP_005261048.1|	-	0.62	10.2	3.0	2.1	8.6	0.0	2.7	2	1	1	3	3	3	0	RuvA,	C-terminal	domain
Thioredoxin_3	PF13192.1	gi|379005377|ref|YP_005261049.1|	-	0.00046	19.9	0.0	0.0011	18.7	0.0	1.7	1	0	0	1	1	1	1	Thioredoxin	domain
DUF1525	PF07511.6	gi|379005377|ref|YP_005261049.1|	-	0.011	15.7	0.1	0.018	15.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1525)
AMMECR1	PF01871.12	gi|379005378|ref|YP_005261050.1|	-	7.9e-20	70.6	0.0	9.6e-20	70.3	0.0	1.1	1	0	0	1	1	1	1	AMMECR1
CarboxypepD_reg	PF13620.1	gi|379005379|ref|YP_005261051.1|	-	3.2e-10	39.9	16.3	0.003	17.5	0.3	7.9	7	0	0	7	7	7	4	Carboxypeptidase	regulatory-like	domain
Peptidase_MA_2	PF13485.1	gi|379005381|ref|YP_005261053.1|	-	0.005	16.8	1.4	0.011	15.8	1.0	1.5	1	0	0	1	1	1	1	Peptidase	MA	superfamily
Asp_protease_2	PF13650.1	gi|379005382|ref|YP_005261054.1|	-	0.005	17.3	0.0	0.0073	16.7	0.0	1.3	1	1	0	1	1	1	1	Aspartyl	protease
Asp_protease_2	PF13650.1	gi|379005384|ref|YP_005261056.1|	-	7.9e-08	32.7	0.0	1.1e-07	32.2	0.0	1.4	1	0	0	1	1	1	1	Aspartyl	protease
gag-asp_proteas	PF13975.1	gi|379005384|ref|YP_005261056.1|	-	3.6e-07	29.8	0.3	1.2e-06	28.1	0.0	2.0	3	0	0	3	3	3	1	gag-polyprotein	putative	aspartyl	protease
RVP	PF00077.15	gi|379005384|ref|YP_005261056.1|	-	2e-06	27.6	0.0	2.7e-06	27.2	0.0	1.1	1	0	0	1	1	1	1	Retroviral	aspartyl	protease
DUF1978	PF09321.5	gi|379005385|ref|YP_005261057.1|	-	0.035	13.5	0.1	0.037	13.4	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1978)
IncA	PF04156.9	gi|379005385|ref|YP_005261057.1|	-	0.076	12.6	0.0	0.081	12.5	0.0	1.0	1	0	0	1	1	1	0	IncA	protein
Peroxin-3	PF04882.7	gi|379005385|ref|YP_005261057.1|	-	0.083	11.5	0.0	0.087	11.5	0.0	1.0	1	0	0	1	1	1	0	Peroxin-3
DUF2746	PF10874.3	gi|379005385|ref|YP_005261057.1|	-	0.81	9.9	3.6	1.1	9.4	2.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2746)
Ribosomal_S30AE	PF02482.14	gi|379005386|ref|YP_005261058.1|	-	0.053	13.9	0.1	1.5	9.2	0.1	2.4	1	1	1	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
tRNA-synt_1e	PF01406.14	gi|379005387|ref|YP_005261059.1|	-	1.4e-110	369.1	0.0	2.3e-110	368.4	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|379005387|ref|YP_005261059.1|	-	3.8e-11	42.2	0.3	2.1e-06	26.6	0.1	2.3	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|379005387|ref|YP_005261059.1|	-	2.2e-10	39.2	0.0	6.3e-09	34.3	0.0	2.1	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
DALR_2	PF09190.6	gi|379005387|ref|YP_005261059.1|	-	5.9e-09	36.0	0.1	2.3e-08	34.1	0.0	2.0	2	0	0	2	2	2	1	DALR	domain
tRNA-synt_1f	PF01921.13	gi|379005387|ref|YP_005261059.1|	-	7.4e-08	31.4	0.0	0.00016	20.5	0.0	2.3	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(K)
tRNA-synt_1d	PF00750.14	gi|379005387|ref|YP_005261059.1|	-	0.0011	17.8	0.0	0.36	9.5	0.0	2.6	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(R)
CRISPR_Cse1	PF09481.5	gi|379005387|ref|YP_005261059.1|	-	0.15	10.7	1.4	0.7	8.5	0.1	2.0	2	0	0	2	2	2	0	CRISPR-associated	protein	Cse1	(CRISPR_cse1)
Beta-Casp	PF10996.3	gi|379005388|ref|YP_005261060.1|	-	2.2e-34	118.1	0.0	1.8e-33	115.1	0.0	2.6	3	1	0	3	3	3	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|379005388|ref|YP_005261060.1|	-	2.9e-19	69.5	0.5	5.2e-19	68.6	0.3	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|379005388|ref|YP_005261060.1|	-	6.8e-14	51.4	0.1	1.6e-13	50.2	0.1	1.7	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|379005388|ref|YP_005261060.1|	-	2.6e-12	46.7	0.1	4.8e-12	45.8	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DRMBL	PF07522.9	gi|379005388|ref|YP_005261060.1|	-	0.019	14.9	0.0	0.049	13.6	0.0	1.7	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
Lactamase_B_3	PF13483.1	gi|379005388|ref|YP_005261060.1|	-	0.066	12.9	0.0	0.27	10.9	0.0	2.0	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
PK	PF00224.16	gi|379005389|ref|YP_005261061.1|	-	2.2e-68	230.4	0.0	2.6e-68	230.1	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|379005389|ref|YP_005261061.1|	-	2.4e-11	43.2	0.0	7e-11	41.6	0.0	1.9	1	1	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
HpcH_HpaI	PF03328.9	gi|379005389|ref|YP_005261061.1|	-	0.11	11.3	0.0	0.21	10.4	0.0	1.5	1	0	0	1	1	1	0	HpcH/HpaI	aldolase/citrate	lyase	family
Memo	PF01875.12	gi|379005390|ref|YP_005261062.1|	-	3.6e-75	252.3	0.0	4.1e-75	252.1	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
LigB	PF02900.13	gi|379005390|ref|YP_005261062.1|	-	2.1e-08	33.4	0.0	3.2e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
Ribosomal_S2	PF00318.15	gi|379005391|ref|YP_005261063.1|	-	5.5e-40	136.8	0.0	4.5e-22	78.3	0.0	2.0	1	1	1	2	2	2	2	Ribosomal	protein	S2
PHP	PF02811.14	gi|379005391|ref|YP_005261063.1|	-	0.0051	16.6	0.0	0.0091	15.8	0.0	1.3	1	0	0	1	1	1	1	PHP	domain
SRPRB	PF09439.5	gi|379005391|ref|YP_005261063.1|	-	0.026	13.7	0.0	0.037	13.2	0.0	1.1	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
FHA	PF00498.21	gi|379005392|ref|YP_005261064.1|	-	1.3e-13	50.8	0.1	1.8e-13	50.3	0.1	1.2	1	0	0	1	1	1	1	FHA	domain
zf-RanBP	PF00641.13	gi|379005392|ref|YP_005261064.1|	-	6e-06	25.2	0.6	8.8e-06	24.7	0.4	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
zinc_ribbon_2	PF13240.1	gi|379005392|ref|YP_005261064.1|	-	2e-05	23.9	0.9	3.2e-05	23.2	0.6	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379005392|ref|YP_005261064.1|	-	5e-05	22.3	0.9	7.9e-05	21.7	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|379005392|ref|YP_005261064.1|	-	0.0008	19.1	1.4	0.0012	18.6	1.0	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Rubredoxin	PF00301.15	gi|379005392|ref|YP_005261064.1|	-	0.0017	18.2	1.9	0.55	10.1	0.3	2.2	2	0	0	2	2	2	2	Rubredoxin
zf-Sec23_Sec24	PF04810.10	gi|379005392|ref|YP_005261064.1|	-	0.028	13.9	1.5	0.64	9.6	0.0	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
Prok-RING_1	PF14446.1	gi|379005392|ref|YP_005261064.1|	-	0.05	13.3	0.7	0.078	12.7	0.5	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Chlam_OMP3	PF03503.8	gi|379005392|ref|YP_005261064.1|	-	0.057	13.6	0.4	0.092	12.9	0.3	1.3	1	0	0	1	1	1	0	Chlamydia	cysteine-rich	outer	membrane	protein	3
zf-tcix	PF14952.1	gi|379005392|ref|YP_005261064.1|	-	0.15	11.4	1.8	0.32	10.3	1.2	1.6	1	1	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-ISL3	PF14690.1	gi|379005392|ref|YP_005261064.1|	-	0.29	11.1	2.6	3.3	7.8	0.2	2.7	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
TF_Zn_Ribbon	PF08271.7	gi|379005392|ref|YP_005261064.1|	-	0.47	9.8	2.8	1.3	8.4	2.0	1.7	1	0	0	1	1	1	0	TFIIB	zinc-binding
Pkinase	PF00069.20	gi|379005393|ref|YP_005261065.1|	-	3.9e-39	134.3	0.0	1e-38	132.9	0.0	1.6	1	1	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|379005393|ref|YP_005261065.1|	-	5.7e-22	78.0	0.0	1e-21	77.1	0.0	1.5	1	1	0	1	1	1	1	Protein	tyrosine	kinase
APH	PF01636.18	gi|379005393|ref|YP_005261065.1|	-	0.0055	16.4	0.1	0.91	9.2	0.0	2.1	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|379005393|ref|YP_005261065.1|	-	0.036	13.1	0.0	0.055	12.5	0.0	1.2	1	0	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
Kinase-like	PF14531.1	gi|379005393|ref|YP_005261065.1|	-	0.086	11.7	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Kinase-like
Mob_synth_C	PF06463.8	gi|379005394|ref|YP_005261066.1|	-	2.2e-23	82.3	0.0	3.2e-23	81.7	0.0	1.2	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Radical_SAM	PF04055.16	gi|379005394|ref|YP_005261066.1|	-	7.7e-23	81.4	0.0	1.5e-22	80.5	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379005394|ref|YP_005261066.1|	-	1e-05	25.5	0.1	2.7e-05	24.1	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379005394|ref|YP_005261066.1|	-	0.00041	20.4	0.0	0.0014	18.7	0.0	1.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
HTH_1	PF00126.22	gi|379005395|ref|YP_005261067.1|	-	9.8e-13	47.6	0.0	1.4e-12	47.1	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_28	PF13518.1	gi|379005395|ref|YP_005261067.1|	-	0.0015	18.5	0.1	0.0024	17.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379005395|ref|YP_005261067.1|	-	0.0016	18.5	0.0	0.0022	18.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_24	PF13412.1	gi|379005395|ref|YP_005261067.1|	-	0.0023	17.2	0.0	0.0051	16.1	0.0	1.6	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|379005395|ref|YP_005261067.1|	-	0.0031	17.1	0.1	0.015	14.9	0.0	1.9	1	1	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|379005395|ref|YP_005261067.1|	-	0.0066	16.0	0.0	0.013	15.0	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_8	PF02954.14	gi|379005395|ref|YP_005261067.1|	-	0.01	15.3	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_45	PF14947.1	gi|379005395|ref|YP_005261067.1|	-	0.046	13.5	0.1	0.093	12.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
NUMOD1	PF07453.8	gi|379005395|ref|YP_005261067.1|	-	0.067	13.0	0.0	0.18	11.6	0.0	1.7	1	0	0	1	1	1	0	NUMOD1	domain
Enolase_C	PF00113.17	gi|379005396|ref|YP_005261068.1|	-	4.6e-55	186.6	0.0	6.1e-55	186.2	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|379005396|ref|YP_005261068.1|	-	2.5e-29	101.8	0.0	4.3e-29	101.0	0.0	1.4	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
MR_MLE	PF01188.16	gi|379005396|ref|YP_005261068.1|	-	0.0044	17.5	0.0	0.016	15.6	0.0	2.0	1	1	1	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MAAL_C	PF07476.6	gi|379005396|ref|YP_005261068.1|	-	0.0056	15.6	0.0	0.0087	15.0	0.0	1.2	1	0	0	1	1	1	1	Methylaspartate	ammonia-lyase	C-terminus
Proteasome	PF00227.21	gi|379005397|ref|YP_005261069.1|	-	1.1e-51	174.7	0.3	1.4e-51	174.4	0.2	1.0	1	0	0	1	1	1	1	Proteasome	subunit
FKBP_C	PF00254.23	gi|379005398|ref|YP_005261070.1|	-	4.6e-09	36.1	0.1	2.1e-08	34.0	0.0	2.0	2	0	0	2	2	2	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
CorC_HlyC	PF03471.12	gi|379005398|ref|YP_005261070.1|	-	0.019	14.7	0.7	1.1	9.0	0.0	3.0	3	0	0	3	3	3	0	Transporter	associated	domain
SIN1	PF05422.7	gi|379005398|ref|YP_005261070.1|	-	0.15	10.5	0.0	0.22	10.0	0.0	1.2	1	0	0	1	1	1	0	Stress-activated	map	kinase	interacting	protein	1	(SIN1)
Ribosomal_S17e	PF00833.13	gi|379005399|ref|YP_005261071.1|	-	2.6e-21	75.6	0.3	2.9e-21	75.4	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	S17
Ribosomal_L2_C	PF03947.13	gi|379005400|ref|YP_005261072.1|	-	2.1e-36	124.5	2.3	3e-36	124.0	1.6	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|379005400|ref|YP_005261072.1|	-	5.2e-09	35.9	0.0	1.3e-08	34.6	0.0	1.7	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
FMN_dh	PF01070.13	gi|379005401|ref|YP_005261073.1|	-	4.4e-29	101.4	0.5	1e-13	50.8	0.0	2.0	1	1	1	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.20	gi|379005401|ref|YP_005261073.1|	-	0.0042	16.0	2.1	0.01	14.7	0.1	2.3	2	1	1	3	3	3	1	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.12	gi|379005401|ref|YP_005261073.1|	-	0.0059	15.5	3.6	0.0086	15.0	0.9	2.1	2	1	0	2	2	2	1	Conserved	region	in	glutamate	synthase
NMO	PF03060.10	gi|379005401|ref|YP_005261073.1|	-	0.087	11.9	2.6	0.22	10.6	1.8	2.0	1	1	0	1	1	1	0	Nitronate	monooxygenase
Band_7	PF01145.20	gi|379005401|ref|YP_005261073.1|	-	0.11	12.4	0.0	2.8	7.8	0.0	2.6	3	0	0	3	3	3	0	SPFH	domain	/	Band	7	family
TF_Zn_Ribbon	PF08271.7	gi|379005402|ref|YP_005261074.1|	-	1.4e-06	27.4	0.3	2.8e-06	26.5	0.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
TFIIS_C	PF01096.13	gi|379005402|ref|YP_005261074.1|	-	0.00024	20.6	5.3	0.14	11.8	3.7	2.4	1	1	0	1	1	1	1	Transcription	factor	S-II	(TFIIS)
Zn_Tnp_IS1595	PF12760.2	gi|379005402|ref|YP_005261074.1|	-	0.00092	18.9	1.5	0.00092	18.9	1.0	2.1	3	0	0	3	3	2	1	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|379005402|ref|YP_005261074.1|	-	0.0015	18.4	1.4	0.51	10.3	0.0	2.6	2	0	0	2	2	2	2	Zinc	ribbon	domain
Ribosomal_L37ae	PF01780.14	gi|379005402|ref|YP_005261074.1|	-	0.0053	16.6	0.3	0.0075	16.1	0.2	1.3	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
zf-3CxxC	PF13695.1	gi|379005402|ref|YP_005261074.1|	-	0.0074	16.4	0.0	0.011	15.8	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	domain
OrfB_Zn_ribbon	PF07282.6	gi|379005402|ref|YP_005261074.1|	-	0.012	15.2	1.3	0.021	14.4	0.9	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
RRN7	PF11781.3	gi|379005402|ref|YP_005261074.1|	-	0.022	14.2	0.5	0.045	13.2	0.4	1.5	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
A2L_zn_ribbon	PF08792.5	gi|379005402|ref|YP_005261074.1|	-	0.022	14.1	1.5	0.063	12.7	1.0	1.8	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
UPF0547	PF10571.4	gi|379005402|ref|YP_005261074.1|	-	0.029	14.0	3.7	0.096	12.4	2.6	1.9	1	1	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|379005402|ref|YP_005261074.1|	-	0.04	13.7	0.2	0.091	12.6	0.2	1.6	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379005402|ref|YP_005261074.1|	-	0.049	12.8	3.0	0.14	11.4	2.1	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|379005402|ref|YP_005261074.1|	-	0.11	12.2	1.4	1.1	9.1	1.0	2.2	1	1	0	1	1	1	0	PhnA	Zinc-Ribbon
zf-HIT	PF04438.11	gi|379005402|ref|YP_005261074.1|	-	0.34	10.5	3.0	8.1	6.1	0.0	2.4	2	0	0	2	2	2	0	HIT	zinc	finger
zinc_ribbon_5	PF13719.1	gi|379005402|ref|YP_005261074.1|	-	0.39	10.3	4.0	2.3	7.8	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379005402|ref|YP_005261074.1|	-	0.48	10.1	4.1	2.4	7.9	0.3	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|379005402|ref|YP_005261074.1|	-	0.48	9.9	5.6	4.4	6.8	3.9	2.2	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Nudix_N_2	PF14803.1	gi|379005402|ref|YP_005261074.1|	-	0.68	9.6	3.1	4.4	7.0	2.2	2.1	1	1	0	1	1	1	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.6	gi|379005402|ref|YP_005261074.1|	-	0.72	9.4	4.0	5.1	6.6	0.3	2.5	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
MoaC	PF01967.16	gi|379005403|ref|YP_005261075.1|	-	1.1e-14	54.2	0.1	1.4e-09	37.7	0.0	3.3	2	1	1	3	3	3	3	MoaC	family
SHMT	PF00464.14	gi|379005404|ref|YP_005261076.1|	-	2.3e-73	246.8	0.0	3.1e-73	246.4	0.0	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Beta_elim_lyase	PF01212.16	gi|379005404|ref|YP_005261076.1|	-	1.5e-09	37.4	0.0	2.2e-09	36.8	0.0	1.1	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.16	gi|379005404|ref|YP_005261076.1|	-	2.9e-07	29.7	0.0	8e-07	28.3	0.0	1.7	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|379005404|ref|YP_005261076.1|	-	3.2e-06	26.4	0.1	1.8e-05	23.9	0.1	2.0	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Cys_Met_Meta_PP	PF01053.15	gi|379005404|ref|YP_005261076.1|	-	0.0018	16.6	0.1	0.004	15.4	0.0	1.6	1	1	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|379005404|ref|YP_005261076.1|	-	0.0032	16.2	0.0	0.07	11.8	0.0	2.2	1	1	0	1	1	1	1	Aminotransferase	class-V
SelA	PF03841.8	gi|379005404|ref|YP_005261076.1|	-	0.05	12.3	0.0	0.18	10.5	0.0	1.8	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
adh_short_C2	PF13561.1	gi|379005405|ref|YP_005261077.1|	-	5.3e-35	121.3	0.0	6.2e-35	121.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|379005405|ref|YP_005261077.1|	-	6.5e-20	71.7	0.3	1.5e-19	70.5	0.0	1.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|379005405|ref|YP_005261077.1|	-	7.1e-09	35.5	0.1	1.3e-08	34.7	0.1	1.3	1	0	0	1	1	1	1	KR	domain
DUF460	PF04312.8	gi|379005405|ref|YP_005261077.1|	-	0.016	14.6	0.6	0.033	13.7	0.1	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF460)
3HCDH_N	PF02737.13	gi|379005405|ref|YP_005261077.1|	-	0.082	12.5	0.4	0.14	11.7	0.3	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
PqqD	PF05402.7	gi|379005405|ref|YP_005261077.1|	-	0.088	12.8	0.3	2.5	8.1	0.0	2.7	3	0	0	3	3	3	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
F420_oxidored	PF03807.12	gi|379005405|ref|YP_005261077.1|	-	0.11	12.8	1.1	0.22	11.9	0.2	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Spore_IV_A	PF09547.5	gi|379005405|ref|YP_005261077.1|	-	0.11	11.1	0.0	0.17	10.5	0.0	1.2	1	0	0	1	1	1	0	Stage	IV	sporulation	protein	A	(spore_IV_A)
DUF2007	PF09413.5	gi|379005406|ref|YP_005261078.1|	-	0.047	13.5	0.0	0.096	12.5	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF2007)
DDE_Tnp_ISAZ013	PF07592.6	gi|379005406|ref|YP_005261078.1|	-	0.13	11.0	0.0	0.17	10.5	0.0	1.2	1	0	0	1	1	1	0	Rhodopirellula	transposase	DDE	domain
EndIII_4Fe-2S	PF10576.4	gi|379005406|ref|YP_005261078.1|	-	0.2	11.8	3.0	0.39	10.9	2.0	1.5	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
dCMP_cyt_deam_1	PF00383.17	gi|379005407|ref|YP_005261079.1|	-	6e-20	70.8	0.3	7.1e-20	70.5	0.2	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|379005407|ref|YP_005261079.1|	-	7.4e-11	42.1	0.4	1.4e-10	41.2	0.1	1.5	2	0	0	2	2	2	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.1	gi|379005407|ref|YP_005261079.1|	-	0.00054	19.4	1.0	0.11	11.9	0.1	2.1	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
YwqJ-deaminase	PF14431.1	gi|379005407|ref|YP_005261079.1|	-	0.0071	16.1	0.7	2.6	7.9	0.1	2.3	1	1	1	2	2	2	2	YwqJ-like	deaminase
ParA	PF10609.4	gi|379005408|ref|YP_005261080.1|	-	2e-27	94.8	0.0	4.6e-27	93.7	0.0	1.6	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|379005408|ref|YP_005261080.1|	-	4.4e-14	52.3	0.1	1.7e-13	50.4	0.1	1.7	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.10	gi|379005408|ref|YP_005261080.1|	-	2.3e-05	23.6	1.7	0.00028	20.0	1.5	2.3	3	0	0	3	3	3	1	Anion-transporting	ATPase
AAA_31	PF13614.1	gi|379005408|ref|YP_005261080.1|	-	0.00023	21.1	0.0	0.0012	18.7	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|379005408|ref|YP_005261080.1|	-	0.0018	17.3	0.0	0.0034	16.5	0.0	1.4	1	1	0	1	1	1	1	ATPase	MipZ
AAA_10	PF12846.2	gi|379005408|ref|YP_005261080.1|	-	0.0098	15.3	1.0	0.038	13.4	0.5	1.8	2	0	0	2	2	2	1	AAA-like	domain
Fer4_NifH	PF00142.13	gi|379005408|ref|YP_005261080.1|	-	0.02	14.1	0.4	0.07	12.3	0.1	1.9	2	1	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_25	PF13481.1	gi|379005408|ref|YP_005261080.1|	-	0.026	13.9	1.0	0.044	13.1	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
ArgK	PF03308.11	gi|379005408|ref|YP_005261080.1|	-	0.045	12.5	0.4	0.082	11.6	0.3	1.4	1	0	0	1	1	1	0	ArgK	protein
AAA_26	PF13500.1	gi|379005408|ref|YP_005261080.1|	-	0.047	13.2	0.1	6.4	6.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
APS_kinase	PF01583.15	gi|379005408|ref|YP_005261080.1|	-	0.067	12.8	0.1	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
MarC	PF01914.12	gi|379005409|ref|YP_005261081.1|	-	2.1e-32	111.8	18.8	2.6e-32	111.5	13.0	1.1	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
Ribosomal_L37e	PF01907.14	gi|379005410|ref|YP_005261082.1|	-	3.3e-22	78.0	14.3	3.5e-22	77.9	9.9	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
zf-ribbon_3	PF13248.1	gi|379005410|ref|YP_005261082.1|	-	6e-05	22.1	2.2	8.1e-05	21.7	1.5	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|379005410|ref|YP_005261082.1|	-	0.00061	19.5	2.0	0.00075	19.2	1.4	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|379005410|ref|YP_005261082.1|	-	0.0032	16.9	3.8	0.0032	16.9	2.7	1.6	2	0	0	2	2	2	1	zinc-ribbon	domain
SelR	PF01641.13	gi|379005410|ref|YP_005261082.1|	-	0.022	14.4	0.3	0.025	14.2	0.2	1.1	1	0	0	1	1	1	0	SelR	domain
Zn_Tnp_IS91	PF14319.1	gi|379005410|ref|YP_005261082.1|	-	0.024	14.1	3.4	0.028	13.9	2.3	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
Stc1	PF12898.2	gi|379005410|ref|YP_005261082.1|	-	0.048	13.7	0.3	0.048	13.7	0.2	1.1	1	0	0	1	1	1	0	Stc1	domain
zf-NADH-PPase	PF09297.6	gi|379005410|ref|YP_005261082.1|	-	0.06	12.8	5.6	0.54	9.8	0.8	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
NMD3	PF04981.8	gi|379005410|ref|YP_005261082.1|	-	0.064	12.3	0.5	0.074	12.1	0.4	1.1	1	0	0	1	1	1	0	NMD3	family
NOB1_Zn_bind	PF08772.6	gi|379005410|ref|YP_005261082.1|	-	0.07	12.9	3.6	0.11	12.3	2.5	1.4	1	1	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
GcpE	PF04551.9	gi|379005410|ref|YP_005261082.1|	-	0.14	10.9	0.6	0.16	10.7	0.4	1.1	1	0	0	1	1	1	0	GcpE	protein
Cys_rich_CPCC	PF14206.1	gi|379005410|ref|YP_005261082.1|	-	0.2	11.2	1.9	0.25	10.9	1.3	1.2	1	0	0	1	1	1	0	Cysteine-rich	CPCC
Zn-ribbon_8	PF09723.5	gi|379005410|ref|YP_005261082.1|	-	0.21	11.5	2.5	0.49	10.3	0.1	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
Rdx	PF10262.4	gi|379005410|ref|YP_005261082.1|	-	0.24	11.4	1.0	0.35	10.9	0.7	1.3	1	0	0	1	1	1	0	Rdx	family
DUF164	PF02591.10	gi|379005410|ref|YP_005261082.1|	-	0.27	11.0	2.1	0.68	9.8	0.2	2.0	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|379005410|ref|YP_005261082.1|	-	0.3	10.7	6.7	0.2	11.3	3.1	1.9	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
UPF0547	PF10571.4	gi|379005410|ref|YP_005261082.1|	-	0.35	10.5	5.3	7.5	6.3	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Mu-like_Com	PF10122.4	gi|379005410|ref|YP_005261082.1|	-	0.69	9.0	4.3	0.23	10.5	1.5	1.5	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
YhfH	PF14149.1	gi|379005410|ref|YP_005261082.1|	-	0.89	9.4	3.1	4.7	7.0	0.2	2.1	1	1	1	2	2	2	0	YhfH-like	protein
zf-Mss51	PF13824.1	gi|379005410|ref|YP_005261082.1|	-	0.91	9.4	5.0	0.5	10.2	0.2	2.0	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
DUF1610	PF07754.6	gi|379005410|ref|YP_005261082.1|	-	0.96	9.6	5.5	13	6.0	0.1	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
OrfB_Zn_ribbon	PF07282.6	gi|379005410|ref|YP_005261082.1|	-	1.3	8.7	5.1	2.9	7.5	3.4	1.7	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Tnp_zf-ribbon_2	PF13842.1	gi|379005410|ref|YP_005261082.1|	-	1.4	9.4	5.9	3.2	8.2	0.6	2.1	1	1	1	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
DUF2752	PF10825.3	gi|379005410|ref|YP_005261082.1|	-	1.5	8.8	3.9	6.3	6.9	0.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2752)
Zn_Tnp_IS1595	PF12760.2	gi|379005410|ref|YP_005261082.1|	-	1.7	8.5	8.9	3	7.7	6.1	1.6	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
LSM	PF01423.17	gi|379005411|ref|YP_005261083.1|	-	1.9e-21	75.3	0.3	2.2e-21	75.1	0.2	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|379005411|ref|YP_005261083.1|	-	0.00032	20.5	0.0	0.0004	20.2	0.0	1.1	1	0	0	1	1	1	1	Ataxin	2	SM	domain
tRNA_int_endo	PF01974.12	gi|379005412|ref|YP_005261084.1|	-	4.2e-05	23.2	0.0	6.2e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
Sen15	PF09631.5	gi|379005412|ref|YP_005261084.1|	-	0.0018	18.4	0.1	0.0026	17.9	0.1	1.5	1	1	0	1	1	1	1	Sen15	protein
TGT_C2	PF14810.1	gi|379005414|ref|YP_005261086.1|	-	3.7e-13	49.0	0.1	6.4e-13	48.3	0.0	1.3	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.15	gi|379005414|ref|YP_005261086.1|	-	1.3e-12	47.2	0.7	2.2e-12	46.4	0.5	1.4	1	0	0	1	1	1	1	PUA	domain
ATG19_autophagy	PF12744.2	gi|379005414|ref|YP_005261086.1|	-	0.0011	18.2	0.0	0.0014	17.9	0.0	1.2	1	0	0	1	1	1	1	Autophagy	protein	Atg19,	Atg8-binding
FBPase	PF00316.15	gi|379005414|ref|YP_005261086.1|	-	0.082	11.7	0.0	2	7.1	0.0	2.0	1	1	1	2	2	2	0	Fructose-1-6-bisphosphatase
HTH_3	PF01381.17	gi|379005415|ref|YP_005261087.1|	-	3.4e-12	45.9	0.7	5.6e-12	45.3	0.5	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|379005415|ref|YP_005261087.1|	-	3.2e-09	36.8	0.5	5.9e-09	36.0	0.4	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|379005415|ref|YP_005261087.1|	-	8.5e-06	25.7	0.1	1.4e-05	25.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_25	PF13413.1	gi|379005415|ref|YP_005261087.1|	-	0.00062	19.3	0.1	0.0011	18.4	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Arc_trans_TRASH	PF08394.5	gi|379005415|ref|YP_005261087.1|	-	0.0036	17.4	1.6	0.0058	16.7	1.1	1.3	1	0	0	1	1	1	1	Archaeal	TRASH	domain
MMR_HSR1	PF01926.18	gi|379005416|ref|YP_005261088.1|	-	1.3e-15	57.3	0.0	2.9e-15	56.2	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP-bdg_N	PF13167.1	gi|379005416|ref|YP_005261088.1|	-	2.4e-08	34.0	0.0	8.2e-08	32.2	0.0	1.9	2	0	0	2	2	2	1	GTP-binding	GTPase	N-terminal
GTP_EFTU	PF00009.22	gi|379005416|ref|YP_005261088.1|	-	1.3e-07	31.2	0.0	0.00017	21.0	0.0	2.3	2	0	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
FeoB_N	PF02421.13	gi|379005416|ref|YP_005261088.1|	-	3.3e-05	23.2	0.0	5.9e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
PduV-EutP	PF10662.4	gi|379005416|ref|YP_005261088.1|	-	0.00053	19.4	0.1	1.2	8.6	0.0	2.8	2	1	1	3	3	3	2	Ethanolamine	utilisation	-	propanediol	utilisation
cobW	PF02492.14	gi|379005416|ref|YP_005261088.1|	-	0.0011	18.4	0.5	0.18	11.2	0.1	2.4	1	1	1	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRPRB	PF09439.5	gi|379005416|ref|YP_005261088.1|	-	0.018	14.2	0.0	0.031	13.4	0.0	1.5	1	0	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Septin	PF00735.13	gi|379005416|ref|YP_005261088.1|	-	0.021	13.8	0.0	4.4	6.2	0.0	2.2	2	0	0	2	2	2	0	Septin
Dynamin_N	PF00350.18	gi|379005416|ref|YP_005261088.1|	-	0.025	14.4	0.1	0.28	11.0	0.0	2.1	1	1	1	2	2	2	0	Dynamin	family
DUF258	PF03193.11	gi|379005416|ref|YP_005261088.1|	-	0.082	12.0	0.0	0.6	9.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_28	PF13521.1	gi|379005416|ref|YP_005261088.1|	-	0.091	12.7	0.0	0.2	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|379005416|ref|YP_005261088.1|	-	0.093	12.4	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Ras	PF00071.17	gi|379005416|ref|YP_005261088.1|	-	0.097	12.0	0.0	0.24	10.7	0.0	1.7	1	1	0	1	1	1	0	Ras	family
T2SE	PF00437.15	gi|379005416|ref|YP_005261088.1|	-	0.11	11.3	0.0	0.21	10.4	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TFIIE_alpha	PF02002.12	gi|379005417|ref|YP_005261089.1|	-	1.9e-07	30.5	2.8	3.4e-07	29.7	2.0	1.4	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Phage_rep_org_N	PF09681.5	gi|379005417|ref|YP_005261089.1|	-	0.0034	16.9	0.7	0.0045	16.5	0.1	1.7	2	0	0	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_Crp_2	PF13545.1	gi|379005417|ref|YP_005261089.1|	-	0.0059	16.3	0.4	0.013	15.2	0.3	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
DUF3140	PF11338.3	gi|379005417|ref|YP_005261089.1|	-	0.0098	15.9	0.0	0.019	15.0	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3140)
DUF4428	PF14471.1	gi|379005417|ref|YP_005261089.1|	-	0.011	15.4	0.1	0.91	9.3	0.0	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
TrmB	PF01978.14	gi|379005417|ref|YP_005261089.1|	-	0.051	13.2	1.9	0.06	13.0	0.1	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.7	gi|379005417|ref|YP_005261089.1|	-	0.061	12.9	1.0	0.16	11.6	0.7	1.7	1	1	0	1	1	1	0	HTH	domain
Sigma70_r4	PF04545.11	gi|379005417|ref|YP_005261089.1|	-	0.069	12.4	0.3	0.16	11.3	0.2	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
DNA_ligase_ZBD	PF03119.11	gi|379005417|ref|YP_005261089.1|	-	0.069	12.8	0.2	0.069	12.8	0.2	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF3847	PF12958.2	gi|379005417|ref|YP_005261089.1|	-	0.077	12.7	0.1	0.19	11.5	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3847)
DUF4423	PF14394.1	gi|379005417|ref|YP_005261089.1|	-	0.081	12.4	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
TF_Zn_Ribbon	PF08271.7	gi|379005417|ref|YP_005261089.1|	-	0.085	12.1	4.3	1.1	8.6	3.0	2.4	1	1	1	2	2	2	0	TFIIB	zinc-binding
HTH_9	PF08221.6	gi|379005417|ref|YP_005261089.1|	-	0.097	12.5	0.1	0.29	11.0	0.0	1.7	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_45	PF14947.1	gi|379005417|ref|YP_005261089.1|	-	0.11	12.3	0.5	0.11	12.3	0.3	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|379005417|ref|YP_005261089.1|	-	0.17	11.3	2.5	0.3	10.4	1.7	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Prok-RING_4	PF14447.1	gi|379005417|ref|YP_005261089.1|	-	0.74	9.4	2.6	3.2	7.3	1.8	2.0	1	1	0	1	1	1	0	Prokaryotic	RING	finger	family	4
zinc_ribbon_4	PF13717.1	gi|379005417|ref|YP_005261089.1|	-	1.2	8.8	3.1	6.2	6.5	0.1	2.6	3	0	0	3	3	3	0	zinc-ribbon	domain
PAC2	PF09754.4	gi|379005418|ref|YP_005261090.1|	-	3.3e-27	95.7	0.0	3.8e-27	95.5	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
DUF3618	PF12277.3	gi|379005418|ref|YP_005261090.1|	-	5.2	7.1	10.1	8.8	6.4	7.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3618)
TGT	PF01702.13	gi|379005419|ref|YP_005261091.1|	-	3.8e-45	154.0	0.0	5.1e-45	153.6	0.0	1.1	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
TGT_C1	PF14809.1	gi|379005419|ref|YP_005261091.1|	-	0.026	14.3	0.0	0.94	9.3	0.0	2.6	2	0	0	2	2	2	0	C1	domain	of	tRNA-guanine	transglycosylase	dimerisation
DUF3159	PF11361.3	gi|379005420|ref|YP_005261092.1|	-	0.06	12.8	1.2	0.075	12.5	0.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3159)
UPF0126	PF03458.8	gi|379005420|ref|YP_005261092.1|	-	2.7	7.6	9.8	12	5.5	5.1	2.4	2	1	1	3	3	3	0	UPF0126	domain
GSH_synth_ATP	PF03917.12	gi|379005421|ref|YP_005261093.1|	-	0.073	11.6	0.0	0.079	11.5	0.0	1.0	1	0	0	1	1	1	0	Eukaryotic	glutathione	synthase,	ATP	binding	domain
T2SE	PF00437.15	gi|379005422|ref|YP_005261094.1|	-	3.6e-35	121.1	0.0	5.4e-35	120.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|379005422|ref|YP_005261094.1|	-	9e-05	21.9	0.0	0.00021	20.7	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_19	PF13245.1	gi|379005422|ref|YP_005261094.1|	-	0.00033	20.3	0.1	0.0087	15.7	0.0	2.7	3	0	0	3	3	3	1	Part	of	AAA	domain
AAA_28	PF13521.1	gi|379005422|ref|YP_005261094.1|	-	0.0032	17.4	0.7	0.0093	15.9	0.1	2.0	2	0	0	2	2	2	1	AAA	domain
MMR_HSR1	PF01926.18	gi|379005422|ref|YP_005261094.1|	-	0.0033	17.3	0.0	0.0089	15.9	0.0	1.8	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FtsK_SpoIIIE	PF01580.13	gi|379005422|ref|YP_005261094.1|	-	0.0044	16.5	0.1	0.01	15.2	0.0	1.6	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|379005422|ref|YP_005261094.1|	-	0.0049	17.1	0.0	0.011	15.9	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
AAA_22	PF13401.1	gi|379005422|ref|YP_005261094.1|	-	0.0069	16.5	0.0	0.015	15.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379005422|ref|YP_005261094.1|	-	0.0091	16.3	0.0	0.018	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
Miro	PF08477.8	gi|379005422|ref|YP_005261094.1|	-	0.012	16.0	0.0	0.027	14.9	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
PduV-EutP	PF10662.4	gi|379005422|ref|YP_005261094.1|	-	0.028	13.8	0.1	0.048	13.1	0.0	1.3	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
NACHT	PF05729.7	gi|379005422|ref|YP_005261094.1|	-	0.029	14.0	0.1	0.05	13.2	0.1	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_18	PF13238.1	gi|379005422|ref|YP_005261094.1|	-	0.035	14.4	0.0	0.075	13.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|379005422|ref|YP_005261094.1|	-	0.035	13.8	0.1	0.063	12.9	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TrwB_AAD_bind	PF10412.4	gi|379005422|ref|YP_005261094.1|	-	0.039	12.5	0.1	0.059	11.9	0.1	1.1	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_17	PF13207.1	gi|379005422|ref|YP_005261094.1|	-	0.04	14.7	0.1	0.17	12.7	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|379005422|ref|YP_005261094.1|	-	0.043	13.0	0.0	0.071	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Mg_chelatase	PF01078.16	gi|379005422|ref|YP_005261094.1|	-	0.055	12.6	0.1	0.088	11.9	0.0	1.2	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
IstB_IS21	PF01695.12	gi|379005422|ref|YP_005261094.1|	-	0.059	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
AAA_16	PF13191.1	gi|379005422|ref|YP_005261094.1|	-	0.072	13.0	0.0	0.14	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
Septin	PF00735.13	gi|379005422|ref|YP_005261094.1|	-	0.076	12.0	0.0	0.12	11.3	0.0	1.2	1	0	0	1	1	1	0	Septin
AAA_30	PF13604.1	gi|379005422|ref|YP_005261094.1|	-	0.087	12.3	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_21	PF13304.1	gi|379005422|ref|YP_005261094.1|	-	0.11	12.4	0.0	0.29	11.0	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
PhoH	PF02562.11	gi|379005422|ref|YP_005261094.1|	-	0.15	11.3	0.4	0.39	9.9	0.3	1.7	1	1	0	1	1	1	0	PhoH-like	protein
AAA_10	PF12846.2	gi|379005422|ref|YP_005261094.1|	-	0.17	11.3	0.0	0.38	10.1	0.0	1.6	1	0	0	1	1	1	0	AAA-like	domain
E1-E2_ATPase	PF00122.15	gi|379005423|ref|YP_005261095.1|	-	0.019	13.9	0.7	0.019	13.9	0.5	3.4	4	0	0	4	4	4	0	E1-E2	ATPase
Acetyltransf_1	PF00583.19	gi|379005424|ref|YP_005261096.1|	-	1.7e-18	66.3	0.1	2.4e-18	65.9	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|379005424|ref|YP_005261096.1|	-	4.6e-10	39.6	0.0	6.2e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|379005424|ref|YP_005261096.1|	-	1.7e-09	37.6	0.2	3e-09	36.8	0.1	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|379005424|ref|YP_005261096.1|	-	5.2e-09	36.1	0.0	8e-09	35.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|379005424|ref|YP_005261096.1|	-	8.1e-08	32.2	0.0	1.2e-07	31.6	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|379005424|ref|YP_005261096.1|	-	2.3e-07	30.4	0.1	4e-07	29.7	0.1	1.3	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_4	PF13420.1	gi|379005424|ref|YP_005261096.1|	-	5.8e-06	26.3	0.0	1.1e-05	25.3	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|379005424|ref|YP_005261096.1|	-	0.00022	21.4	0.0	0.00032	20.8	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
OTCace_N	PF02729.16	gi|379005425|ref|YP_005261097.1|	-	3.7e-45	153.0	0.0	5.4e-45	152.5	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|379005425|ref|YP_005261097.1|	-	1.4e-34	119.2	0.0	2.5e-34	118.4	0.0	1.4	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OMPdecase	PF00215.19	gi|379005426|ref|YP_005261098.1|	-	1.1e-17	64.2	0.2	9.9e-17	61.0	0.1	2.0	1	1	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
DUF763	PF05559.6	gi|379005427|ref|YP_005261099.1|	-	9.4e-126	419.0	0.0	1.1e-125	418.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
PGM_PMM_I	PF02878.11	gi|379005428|ref|YP_005261100.1|	-	1.9e-28	98.6	0.0	3.8e-28	97.7	0.0	1.5	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|379005428|ref|YP_005261100.1|	-	2.6e-20	72.6	0.1	7.2e-20	71.2	0.0	1.7	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|379005428|ref|YP_005261100.1|	-	5.9e-20	71.4	0.0	9.4e-20	70.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|379005428|ref|YP_005261100.1|	-	2.9e-11	43.2	0.3	8.1e-11	41.7	0.2	1.8	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Antibiotic_NAT	PF02522.9	gi|379005428|ref|YP_005261100.1|	-	0.074	12.2	0.0	0.18	11.0	0.0	1.6	2	0	0	2	2	2	0	Aminoglycoside	3-N-acetyltransferase
Pyr_redox_2	PF07992.9	gi|379005429|ref|YP_005261101.1|	-	4.3e-07	30.0	0.0	0.00012	22.0	0.0	2.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|379005429|ref|YP_005261101.1|	-	3.2e-05	22.9	0.4	0.013	14.3	0.1	3.2	4	0	0	4	4	4	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|379005429|ref|YP_005261101.1|	-	3.5e-05	23.7	0.8	0.0075	16.2	0.2	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|379005429|ref|YP_005261101.1|	-	6.8e-05	22.0	1.0	0.0019	17.3	0.2	2.8	3	0	0	3	3	3	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|379005429|ref|YP_005261101.1|	-	0.00024	21.4	3.0	0.14	12.5	0.2	2.8	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|379005429|ref|YP_005261101.1|	-	0.0037	17.3	0.6	0.86	9.6	0.2	2.4	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379005429|ref|YP_005261101.1|	-	0.022	13.6	2.8	0.11	11.3	0.4	2.5	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|379005429|ref|YP_005261101.1|	-	0.14	12.4	0.5	4.6	7.5	0.0	2.4	2	0	0	2	2	2	0	Putative	NAD(P)-binding
NERD	PF08378.6	gi|379005430|ref|YP_005261102.1|	-	2.2e-06	27.9	0.0	3.5e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	Nuclease-related	domain
Mrr_cat	PF04471.7	gi|379005430|ref|YP_005261102.1|	-	2.8e-06	27.1	0.0	3.6e-06	26.7	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
PIG-Y	PF15159.1	gi|379005431|ref|YP_005261103.1|	-	5.5	7.2	9.5	0.75	10.0	1.5	2.7	1	1	2	3	3	3	0	Phosphatidylinositol	N-acetylglucosaminyltransferase	subunit	Y
MMR_HSR1	PF01926.18	gi|379005432|ref|YP_005261104.1|	-	4.4e-18	65.3	0.1	1.3e-14	54.1	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|379005432|ref|YP_005261104.1|	-	6.7e-08	32.5	0.1	0.0011	18.7	0.0	3.1	2	1	1	3	3	3	2	Dynamin	family
FeoB_N	PF02421.13	gi|379005432|ref|YP_005261104.1|	-	4.3e-07	29.3	0.2	0.00059	19.1	0.1	2.3	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
GTP_EFTU	PF00009.22	gi|379005432|ref|YP_005261104.1|	-	5.2e-07	29.2	0.0	1.1e-05	25.0	0.0	2.2	1	1	1	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
DUF258	PF03193.11	gi|379005432|ref|YP_005261104.1|	-	2.9e-05	23.3	0.0	9.8e-05	21.5	0.0	1.8	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|379005432|ref|YP_005261104.1|	-	0.0018	17.7	0.1	0.055	12.9	0.0	2.2	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
Ras	PF00071.17	gi|379005432|ref|YP_005261104.1|	-	0.0021	17.4	0.0	1.5	8.1	0.0	2.2	2	0	0	2	2	2	2	Ras	family
AAA_17	PF13207.1	gi|379005432|ref|YP_005261104.1|	-	0.0082	16.9	0.3	0.058	14.2	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|379005432|ref|YP_005261104.1|	-	0.0086	16.3	0.1	0.089	13.1	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
Arf	PF00025.16	gi|379005432|ref|YP_005261104.1|	-	0.0095	15.1	0.2	0.37	10.0	0.0	2.4	1	1	1	2	2	2	1	ADP-ribosylation	factor	family
PduV-EutP	PF10662.4	gi|379005432|ref|YP_005261104.1|	-	0.026	13.9	0.0	0.46	9.9	0.0	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_16	PF13191.1	gi|379005432|ref|YP_005261104.1|	-	0.046	13.7	0.1	0.22	11.4	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
AIG1	PF04548.11	gi|379005432|ref|YP_005261104.1|	-	0.049	12.7	0.0	0.24	10.4	0.0	1.9	2	0	0	2	2	2	0	AIG1	family
Miro	PF08477.8	gi|379005432|ref|YP_005261104.1|	-	0.073	13.5	0.0	0.21	12.1	0.0	1.8	2	0	0	2	2	2	0	Miro-like	protein
MobB	PF03205.9	gi|379005432|ref|YP_005261104.1|	-	0.12	12.0	0.0	0.23	11.1	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP-synt_D	PF01813.12	gi|379005433|ref|YP_005261105.1|	-	2e-43	148.2	9.9	2.3e-43	148.0	6.8	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
GPAT_N	PF14829.1	gi|379005433|ref|YP_005261105.1|	-	0.029	14.0	0.0	0.13	11.9	0.0	2.1	1	1	1	2	2	2	0	Glycerol-3-phosphate	acyltransferase	N-terminal
Cep57_CLD_2	PF14197.1	gi|379005433|ref|YP_005261105.1|	-	0.19	11.7	4.9	0.099	12.5	1.6	1.9	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
PSP1	PF04468.7	gi|379005434|ref|YP_005261106.1|	-	0.057	13.3	0.2	0.059	13.3	0.1	1.0	1	0	0	1	1	1	0	PSP1	C-terminal	conserved	region
Peptidase_M41	PF01434.13	gi|379005434|ref|YP_005261106.1|	-	0.061	12.7	0.7	0.062	12.7	0.5	1.0	1	0	0	1	1	1	0	Peptidase	family	M41
NYD-SP28	PF14772.1	gi|379005434|ref|YP_005261106.1|	-	0.064	13.3	2.1	0.069	13.2	1.4	1.2	1	0	0	1	1	1	0	Sperm	tail
ATP-synt_C	PF00137.16	gi|379005435|ref|YP_005261107.1|	-	3.6e-21	74.8	13.8	3.6e-21	74.8	9.6	1.7	2	0	0	2	2	2	1	ATP	synthase	subunit	C
ATG22	PF11700.3	gi|379005435|ref|YP_005261107.1|	-	0.093	11.1	3.0	0.11	10.9	2.1	1.2	1	0	0	1	1	1	0	Vacuole	effluxer	Atg22	like
DUF3094	PF11293.3	gi|379005435|ref|YP_005261107.1|	-	1.2	8.6	5.3	0.17	11.3	0.5	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3094)
DUF4407	PF14362.1	gi|379005435|ref|YP_005261107.1|	-	8.4	5.2	6.7	4.2	6.2	3.6	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
vATP-synt_AC39	PF01992.11	gi|379005436|ref|YP_005261108.1|	-	2.8e-10	39.8	1.6	3.3e-10	39.6	1.1	1.2	1	1	0	1	1	1	1	ATP	synthase	(C/AC39)	subunit
Mitofilin	PF09731.4	gi|379005437|ref|YP_005261109.1|	-	0.0038	15.9	10.5	0.0044	15.7	7.3	1.0	1	0	0	1	1	1	1	Mitochondrial	inner	membrane	protein
DivIVA	PF05103.8	gi|379005437|ref|YP_005261109.1|	-	0.022	14.8	12.4	0.032	14.2	8.6	1.2	1	0	0	1	1	1	0	DivIVA	protein
Phage_connect_1	PF05135.8	gi|379005437|ref|YP_005261109.1|	-	0.029	14.5	2.2	0.041	14.0	1.5	1.3	1	1	0	1	1	1	0	Phage	gp6-like	head-tail	connector	protein
TBCA	PF02970.11	gi|379005437|ref|YP_005261109.1|	-	0.03	14.4	11.9	0.064	13.3	8.2	1.6	1	1	0	1	1	1	0	Tubulin	binding	cofactor	A
SRF-TF	PF00319.13	gi|379005437|ref|YP_005261109.1|	-	0.046	12.9	0.1	0.12	11.6	0.1	1.8	1	0	0	1	1	1	0	SRF-type	transcription	factor	(DNA-binding	and	dimerisation	domain)
UxuA	PF03786.8	gi|379005437|ref|YP_005261109.1|	-	0.049	12.1	0.5	0.054	12.0	0.3	1.1	1	0	0	1	1	1	0	D-mannonate	dehydratase	(UxuA)
DUF3420	PF11900.3	gi|379005437|ref|YP_005261109.1|	-	0.072	13.2	3.4	0.24	11.5	2.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3420)
DASH_Duo1	PF08651.5	gi|379005437|ref|YP_005261109.1|	-	0.074	12.6	5.9	0.18	11.4	1.4	2.3	1	1	1	2	2	2	0	DASH	complex	subunit	Duo1
Sec66	PF09802.4	gi|379005437|ref|YP_005261109.1|	-	0.077	12.3	5.5	0.081	12.3	3.5	1.3	1	1	0	1	1	1	0	Preprotein	translocase	subunit	Sec66
MM_CoA_mutase	PF01642.17	gi|379005437|ref|YP_005261109.1|	-	0.093	10.8	7.6	0.11	10.5	5.3	1.0	1	0	0	1	1	1	0	Methylmalonyl-CoA	mutase
5_3_exonuc	PF01367.15	gi|379005437|ref|YP_005261109.1|	-	0.1	12.8	3.3	0.12	12.6	1.7	1.5	1	1	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
FliD_C	PF07195.7	gi|379005437|ref|YP_005261109.1|	-	0.11	11.8	2.6	0.12	11.6	1.8	1.1	1	0	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
ISG65-75	PF11727.3	gi|379005437|ref|YP_005261109.1|	-	0.11	11.5	8.5	0.13	11.3	5.9	1.1	1	0	0	1	1	1	0	Invariant	surface	glycoprotein
DUF4304	PF14137.1	gi|379005437|ref|YP_005261109.1|	-	0.12	12.4	0.8	0.16	12.0	0.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4304)
CRISPR_Cse1	PF09481.5	gi|379005437|ref|YP_005261109.1|	-	0.17	10.5	0.4	0.18	10.4	0.3	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	Cse1	(CRISPR_cse1)
Pox_polyA_pol	PF03296.8	gi|379005437|ref|YP_005261109.1|	-	0.24	10.9	4.5	0.16	11.5	1.7	1.6	1	1	1	2	2	2	0	Poxvirus	poly(A)	polymerase	nucleotidyltransferase	domain
YpjP	PF14005.1	gi|379005437|ref|YP_005261109.1|	-	0.37	10.5	4.3	0.45	10.2	3.0	1.2	1	0	0	1	1	1	0	YpjP-like	protein
GGGtGRT	PF14057.1	gi|379005437|ref|YP_005261109.1|	-	0.39	9.4	2.4	0.44	9.3	1.3	1.3	1	1	0	1	1	1	0	GGGtGRT	protein
DUF3509	PF12021.3	gi|379005437|ref|YP_005261109.1|	-	0.4	10.4	2.0	1.6	8.5	0.1	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3509)
DUF883	PF05957.8	gi|379005437|ref|YP_005261109.1|	-	0.42	11.0	6.3	0.65	10.4	1.8	2.1	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
CAP_N	PF01213.14	gi|379005437|ref|YP_005261109.1|	-	0.5	9.5	3.5	0.6	9.3	2.5	1.0	1	0	0	1	1	1	0	Adenylate	cyclase	associated	(CAP)	N	terminal
TAF	PF02969.12	gi|379005437|ref|YP_005261109.1|	-	0.56	10.1	5.2	8.2	6.4	0.6	2.6	1	1	1	2	2	2	0	TATA	box	binding	protein	associated	factor	(TAF)
DUF2252	PF10009.4	gi|379005437|ref|YP_005261109.1|	-	0.59	8.9	3.0	0.65	8.8	2.1	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2252)
Peptidase_M55	PF04951.8	gi|379005437|ref|YP_005261109.1|	-	0.71	9.0	5.0	0.77	8.9	3.0	1.3	1	1	0	1	1	1	0	D-aminopeptidase
MAP7	PF05672.6	gi|379005437|ref|YP_005261109.1|	-	0.72	9.2	11.0	0.93	8.8	7.6	1.2	1	0	0	1	1	1	0	MAP7	(E-MAP-115)	family
Prominin	PF05478.6	gi|379005437|ref|YP_005261109.1|	-	0.72	7.3	5.3	0.75	7.2	3.7	1.0	1	0	0	1	1	1	0	Prominin
Phasin	PF05597.6	gi|379005437|ref|YP_005261109.1|	-	0.74	9.5	9.1	1.6	8.4	3.4	2.0	1	1	1	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Mannitol_dh	PF01232.18	gi|379005437|ref|YP_005261109.1|	-	0.91	9.4	4.1	1.1	9.1	2.9	1.1	1	0	0	1	1	1	0	Mannitol	dehydrogenase	Rossmann	domain
PIN_2	PF10130.4	gi|379005437|ref|YP_005261109.1|	-	0.94	9.5	5.0	1.2	9.2	3.1	1.6	1	1	0	1	1	1	0	PIN	domain
HSP70	PF00012.15	gi|379005437|ref|YP_005261109.1|	-	0.95	7.2	9.1	1.1	7.0	6.3	1.0	1	0	0	1	1	1	0	Hsp70	protein
ATP-synt_B	PF00430.13	gi|379005437|ref|YP_005261109.1|	-	1.1	9.1	14.3	2.4	7.9	5.5	2.1	1	1	1	2	2	2	0	ATP	synthase	B/B'	CF(0)
Mst1_SARAH	PF11629.3	gi|379005437|ref|YP_005261109.1|	-	1.5	8.6	4.9	0.81	9.5	1.4	2.1	2	0	0	2	2	2	0	C	terminal	SARAH	domain	of	Mst1
Fib_alpha	PF08702.5	gi|379005437|ref|YP_005261109.1|	-	2.5	8.2	9.5	4.7	7.3	6.6	1.5	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
VSG_B	PF13206.1	gi|379005437|ref|YP_005261109.1|	-	2.7	7.0	6.2	3	6.8	4.3	1.0	1	0	0	1	1	1	0	Trypanosomal	VSG	domain
DUF2120	PF09893.4	gi|379005437|ref|YP_005261109.1|	-	3.1	7.7	8.1	5.1	7.0	5.3	1.5	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
Ribosomal_S13	PF00416.17	gi|379005437|ref|YP_005261109.1|	-	3.2	8.2	7.3	18	5.8	5.1	2.0	1	1	0	1	1	1	0	Ribosomal	protein	S13/S18
phage_tail_N	PF08400.5	gi|379005437|ref|YP_005261109.1|	-	3.7	7.2	5.6	6.3	6.5	0.7	2.3	1	1	1	2	2	2	0	Prophage	tail	fibre	N-terminal
LMBR1	PF04791.11	gi|379005437|ref|YP_005261109.1|	-	4.4	5.7	5.3	5.4	5.4	3.7	1.1	1	0	0	1	1	1	0	LMBR1-like	membrane	protein
Phage_Mu_Gam	PF07352.7	gi|379005437|ref|YP_005261109.1|	-	4.7	6.7	14.2	0.92	9.0	4.0	2.3	1	1	1	2	2	2	0	Bacteriophage	Mu	Gam	like	protein
DUF2462	PF09495.5	gi|379005437|ref|YP_005261109.1|	-	4.9	7.9	7.8	2	9.2	2.9	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2462)
SPOB_a	PF14689.1	gi|379005437|ref|YP_005261109.1|	-	5.1	6.7	8.5	9.4	5.8	0.8	3.2	1	1	2	3	3	3	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
YtxH	PF12732.2	gi|379005437|ref|YP_005261109.1|	-	6.2	7.2	10.6	11	6.4	0.9	2.2	1	1	1	2	2	2	0	YtxH-like	protein
DNA_topoisoIV	PF00521.15	gi|379005437|ref|YP_005261109.1|	-	6.8	5.4	10.9	7.8	5.2	7.6	1.0	1	0	0	1	1	1	0	DNA	gyrase/topoisomerase	IV,	subunit	A
Band_7	PF01145.20	gi|379005438|ref|YP_005261110.1|	-	1.4e-32	113.0	1.8	1.9e-32	112.6	1.2	1.1	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|379005438|ref|YP_005261110.1|	-	0.0098	15.4	0.0	0.038	13.5	0.0	1.9	2	0	0	2	2	2	1	SPFH	domain-Band	7	family
Abhydrolase_9_N	PF15420.1	gi|379005438|ref|YP_005261110.1|	-	0.24	11.1	3.1	0.54	9.9	2.2	1.6	1	0	0	1	1	1	0	Alpha/beta-hydrolase	family	N-terminus
NfeD	PF01957.13	gi|379005439|ref|YP_005261111.1|	-	4e-34	117.8	6.5	4e-34	117.8	4.5	2.6	2	0	0	2	2	2	1	NfeD-like	C-terminal,	partner-binding
SDH_sah	PF01972.11	gi|379005439|ref|YP_005261111.1|	-	2.8e-05	23.0	1.4	4.3e-05	22.4	0.1	1.8	2	0	0	2	2	2	1	Serine	dehydrogenase	proteinase
Desmo_N	PF06771.6	gi|379005439|ref|YP_005261111.1|	-	0.076	12.9	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	Viral	Desmoplakin	N-terminus
DUF3040	PF11239.3	gi|379005440|ref|YP_005261112.1|	-	0.12	12.4	2.8	0.16	11.9	1.9	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Metal_resist	PF13801.1	gi|379005441|ref|YP_005261113.1|	-	0.092	12.7	0.0	0.16	11.9	0.0	1.5	2	0	0	2	2	2	0	Heavy-metal	resistance
AMMECR1	PF01871.12	gi|379005442|ref|YP_005261114.1|	-	3.7e-54	182.4	0.0	4.5e-54	182.1	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
DUF4428	PF14471.1	gi|379005443|ref|YP_005261115.1|	-	0.0094	15.6	4.4	0.0094	15.6	3.1	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4428)
PhnA_Zn_Ribbon	PF08274.7	gi|379005443|ref|YP_005261115.1|	-	0.014	15.1	0.8	0.034	13.9	0.0	2.1	2	1	0	2	2	2	0	PhnA	Zinc-Ribbon
zf-HYPF	PF07503.7	gi|379005443|ref|YP_005261115.1|	-	0.022	14.1	2.9	0.023	14.0	0.5	2.0	2	0	0	2	2	2	0	HypF	finger
Tnp_zf-ribbon_2	PF13842.1	gi|379005443|ref|YP_005261115.1|	-	0.18	12.2	13.3	0.54	10.7	3.4	2.6	2	1	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
LIM	PF00412.17	gi|379005443|ref|YP_005261115.1|	-	0.53	10.3	9.6	2.1	8.4	6.6	2.0	1	1	0	1	1	1	0	LIM	domain
Prok-RING_1	PF14446.1	gi|379005443|ref|YP_005261115.1|	-	1.4	8.6	11.6	5.2	6.8	2.2	2.6	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
DUF164	PF02591.10	gi|379005443|ref|YP_005261115.1|	-	2.4	8.0	5.9	0.49	10.2	0.7	2.0	2	0	0	2	2	2	0	Putative	zinc	ribbon	domain
Nol1_Nop2_Fmu	PF01189.12	gi|379005444|ref|YP_005261116.1|	-	1.6e-21	76.9	0.0	7.3e-20	71.4	0.0	2.1	2	0	0	2	2	2	1	NOL1/NOP2/sun	family
PUA	PF01472.15	gi|379005444|ref|YP_005261116.1|	-	1.7e-13	50.0	0.9	3.9e-13	48.9	0.6	1.6	1	0	0	1	1	1	1	PUA	domain
Methyltransf_31	PF13847.1	gi|379005444|ref|YP_005261116.1|	-	0.0013	18.3	0.0	0.0024	17.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379005444|ref|YP_005261116.1|	-	0.0032	17.5	0.0	0.0052	16.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
YycI	PF09648.5	gi|379005445|ref|YP_005261117.1|	-	0.1	12.0	0.0	0.13	11.6	0.0	1.1	1	0	0	1	1	1	0	YycH	protein
IF-2B	PF01008.12	gi|379005446|ref|YP_005261118.1|	-	1.3e-77	260.5	0.2	1.6e-77	260.2	0.1	1.1	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
PEP-utilizers	PF00391.18	gi|379005446|ref|YP_005261118.1|	-	0.0093	15.5	0.0	16	5.1	0.0	3.4	3	0	0	3	3	3	2	PEP-utilising	enzyme,	mobile	domain
Mrr_cat	PF04471.7	gi|379005447|ref|YP_005261119.1|	-	1.7e-06	27.7	0.0	2.7e-06	27.1	0.0	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
DUF91	PF01939.11	gi|379005447|ref|YP_005261119.1|	-	2.8e-05	23.4	0.2	5.7e-05	22.3	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF91
DUF234	PF03008.9	gi|379005447|ref|YP_005261119.1|	-	0.008	16.2	0.0	0.019	15.0	0.0	1.6	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
DUF4143	PF13635.1	gi|379005447|ref|YP_005261119.1|	-	0.016	15.3	0.0	0.027	14.6	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
NERD	PF08378.6	gi|379005447|ref|YP_005261119.1|	-	0.063	13.5	0.0	0.093	13.0	0.0	1.4	1	0	0	1	1	1	0	Nuclease-related	domain
HTH_20	PF12840.2	gi|379005448|ref|YP_005261120.1|	-	8.5e-11	41.5	0.1	1.2e-10	40.9	0.1	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|379005448|ref|YP_005261120.1|	-	1.3e-07	31.1	0.0	2.2e-07	30.4	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|379005448|ref|YP_005261120.1|	-	4e-06	26.1	0.3	7.8e-06	25.1	0.0	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379005448|ref|YP_005261120.1|	-	4.2e-06	26.3	0.1	7.7e-06	25.5	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379005448|ref|YP_005261120.1|	-	0.00014	21.5	0.0	0.00023	20.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|379005448|ref|YP_005261120.1|	-	0.0006	20.0	0.1	0.00095	19.4	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|379005448|ref|YP_005261120.1|	-	0.0013	18.7	0.1	0.0024	17.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|379005448|ref|YP_005261120.1|	-	0.0054	16.8	0.1	0.0068	16.5	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_Crp_2	PF13545.1	gi|379005448|ref|YP_005261120.1|	-	0.0058	16.4	0.0	0.0087	15.8	0.0	1.3	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|379005448|ref|YP_005261120.1|	-	0.011	15.4	0.1	0.016	14.9	0.1	1.2	1	0	0	1	1	1	0	MarR	family
HTH_28	PF13518.1	gi|379005448|ref|YP_005261120.1|	-	0.017	15.1	0.2	0.024	14.6	0.1	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379005448|ref|YP_005261120.1|	-	0.021	14.3	0.7	0.053	13.0	0.5	1.6	1	1	0	1	1	1	0	TFIIE	alpha	subunit
Penicillinase_R	PF03965.11	gi|379005448|ref|YP_005261120.1|	-	0.063	13.3	0.0	0.098	12.7	0.0	1.4	1	1	0	1	1	1	0	Penicillinase	repressor
B-block_TFIIIC	PF04182.7	gi|379005448|ref|YP_005261120.1|	-	0.13	12.1	0.1	0.31	10.9	0.1	1.7	1	1	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Cdc6_C	PF09079.6	gi|379005449|ref|YP_005261121.1|	-	8.6e-23	79.8	0.2	5.2e-22	77.3	0.1	2.3	3	0	0	3	3	3	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|379005449|ref|YP_005261121.1|	-	8.5e-11	42.1	0.0	3e-10	40.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379005449|ref|YP_005261121.1|	-	1.5e-07	31.6	0.0	4.7e-07	29.9	0.0	1.9	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|379005449|ref|YP_005261121.1|	-	0.00054	20.1	0.0	0.0091	16.2	0.0	2.5	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_19	PF13245.1	gi|379005449|ref|YP_005261121.1|	-	0.0087	15.7	0.0	0.021	14.5	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_5	PF07728.9	gi|379005449|ref|YP_005261121.1|	-	0.028	14.1	0.0	0.13	11.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|379005449|ref|YP_005261121.1|	-	0.029	15.1	0.0	0.083	13.7	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|379005449|ref|YP_005261121.1|	-	0.034	12.7	0.0	0.059	11.9	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
Arch_ATPase	PF01637.13	gi|379005449|ref|YP_005261121.1|	-	0.037	13.7	0.0	0.067	12.8	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_18	PF13238.1	gi|379005449|ref|YP_005261121.1|	-	0.055	13.7	0.0	0.1	12.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.11	gi|379005449|ref|YP_005261121.1|	-	0.059	12.5	0.1	6.8	5.8	0.0	2.3	1	1	0	2	2	2	0	PhoH-like	protein
SRP54	PF00448.17	gi|379005449|ref|YP_005261121.1|	-	0.091	12.1	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Sigma54_activat	PF00158.21	gi|379005449|ref|YP_005261121.1|	-	0.11	11.9	0.0	0.19	11.1	0.0	1.3	1	0	0	1	1	1	0	Sigma-54	interaction	domain
MobB	PF03205.9	gi|379005449|ref|YP_005261121.1|	-	0.16	11.6	0.0	0.33	10.6	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF3195	PF11424.3	gi|379005450|ref|YP_005261122.1|	-	8.7e-27	93.1	1.3	9.8e-27	92.9	0.9	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3195)
AAA	PF00004.24	gi|379005451|ref|YP_005261123.1|	-	2.5e-15	56.8	0.0	6.9e-15	55.4	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Rad17	PF03215.10	gi|379005451|ref|YP_005261123.1|	-	1.1e-10	40.8	0.1	2.9e-05	22.9	0.0	2.6	2	1	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|379005451|ref|YP_005261123.1|	-	1.5e-08	33.9	0.1	5.6e-06	25.5	0.0	2.8	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
TIP49	PF06068.8	gi|379005451|ref|YP_005261123.1|	-	3.5e-08	32.5	0.3	0.00011	21.1	0.0	2.3	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_17	PF13207.1	gi|379005451|ref|YP_005261123.1|	-	1e-07	32.7	0.4	1.3e-06	29.2	0.0	2.7	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379005451|ref|YP_005261123.1|	-	5.5e-07	29.7	0.3	0.0016	18.6	0.0	3.8	3	1	0	3	3	3	1	AAA	domain
DNA_pol3_delta	PF06144.8	gi|379005451|ref|YP_005261123.1|	-	2e-06	27.4	0.0	2.1e-05	24.0	0.0	2.4	3	0	0	3	3	3	1	DNA	polymerase	III,	delta	subunit
RNA_helicase	PF00910.17	gi|379005451|ref|YP_005261123.1|	-	3.1e-06	27.3	0.0	2.6e-05	24.3	0.0	2.2	2	0	0	2	2	2	1	RNA	helicase
AAA_16	PF13191.1	gi|379005451|ref|YP_005261123.1|	-	3.5e-06	27.1	0.3	1.8e-05	24.8	0.0	2.2	3	0	0	3	3	2	1	AAA	ATPase	domain
AAA_5	PF07728.9	gi|379005451|ref|YP_005261123.1|	-	5e-06	26.2	0.1	1.9e-05	24.4	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|379005451|ref|YP_005261123.1|	-	5.5e-06	26.0	0.4	0.0001	21.9	0.1	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|379005451|ref|YP_005261123.1|	-	8.1e-06	25.7	0.0	2.8e-05	24.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|379005451|ref|YP_005261123.1|	-	1.4e-05	25.4	0.1	6e-05	23.3	0.0	2.2	2	0	0	2	2	1	1	AAA	domain
AAA_2	PF07724.9	gi|379005451|ref|YP_005261123.1|	-	3.3e-05	23.8	0.0	6.6e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
Zeta_toxin	PF06414.7	gi|379005451|ref|YP_005261123.1|	-	8.4e-05	21.7	0.0	0.00016	20.8	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_33	PF13671.1	gi|379005451|ref|YP_005261123.1|	-	0.0001	22.2	0.0	0.00025	20.9	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_28	PF13521.1	gi|379005451|ref|YP_005261123.1|	-	0.00025	21.0	0.1	0.001	19.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|379005451|ref|YP_005261123.1|	-	0.00034	20.3	0.1	0.007	16.0	0.0	2.6	2	1	1	3	3	2	1	NACHT	domain
NTPase_1	PF03266.10	gi|379005451|ref|YP_005261123.1|	-	0.00052	19.7	0.1	0.0026	17.4	0.0	2.1	1	1	1	2	2	2	1	NTPase
DUF258	PF03193.11	gi|379005451|ref|YP_005261123.1|	-	0.0015	17.7	0.0	0.0029	16.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
DUF815	PF05673.8	gi|379005451|ref|YP_005261123.1|	-	0.002	17.1	0.0	0.0082	15.1	0.0	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.13	gi|379005451|ref|YP_005261123.1|	-	0.0024	17.5	0.1	0.032	13.8	0.0	2.5	2	1	0	2	2	1	1	Bacterial	dnaA	protein
UPF0079	PF02367.12	gi|379005451|ref|YP_005261123.1|	-	0.0025	17.4	0.0	0.016	14.8	0.0	2.1	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_3	PF07726.6	gi|379005451|ref|YP_005261123.1|	-	0.0029	17.2	0.0	0.008	15.7	0.0	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|379005451|ref|YP_005261123.1|	-	0.0033	16.8	0.0	0.01	15.2	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|379005451|ref|YP_005261123.1|	-	0.004	16.6	0.0	0.0074	15.7	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_29	PF13555.1	gi|379005451|ref|YP_005261123.1|	-	0.0052	16.2	0.0	0.01	15.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DEAD	PF00270.24	gi|379005451|ref|YP_005261123.1|	-	0.0073	15.8	0.0	4.9	6.6	0.0	2.5	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
ABC_tran	PF00005.22	gi|379005451|ref|YP_005261123.1|	-	0.0091	16.2	0.0	0.076	13.3	0.0	2.3	3	0	0	3	3	3	1	ABC	transporter
AAA_10	PF12846.2	gi|379005451|ref|YP_005261123.1|	-	0.013	14.9	0.1	2.2	7.6	0.0	2.3	1	1	0	2	2	2	0	AAA-like	domain
HEAT_2	PF13646.1	gi|379005451|ref|YP_005261123.1|	-	0.021	15.1	1.9	3.2	8.0	0.2	2.5	2	0	0	2	2	2	0	HEAT	repeats
AAA_30	PF13604.1	gi|379005451|ref|YP_005261123.1|	-	0.049	13.1	0.1	0.13	11.8	0.0	1.6	2	0	0	2	2	1	0	AAA	domain
Viral_helicase1	PF01443.13	gi|379005451|ref|YP_005261123.1|	-	0.059	12.8	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_11	PF13086.1	gi|379005451|ref|YP_005261123.1|	-	0.064	12.8	0.0	0.11	12.0	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379005451|ref|YP_005261123.1|	-	0.07	13.0	0.0	0.15	12.0	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_24	PF13479.1	gi|379005451|ref|YP_005261123.1|	-	0.082	12.4	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NB-ARC	PF00931.17	gi|379005451|ref|YP_005261123.1|	-	0.083	11.7	0.0	0.49	9.2	0.0	2.0	2	0	0	2	2	2	0	NB-ARC	domain
MobB	PF03205.9	gi|379005451|ref|YP_005261123.1|	-	0.11	12.1	0.0	0.24	11.1	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Mg_chelatase	PF01078.16	gi|379005451|ref|YP_005261123.1|	-	0.13	11.3	0.0	0.27	10.3	0.0	1.5	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
cobW	PF02492.14	gi|379005451|ref|YP_005261123.1|	-	0.13	11.6	0.0	0.24	10.7	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
Miro	PF08477.8	gi|379005451|ref|YP_005261123.1|	-	0.13	12.7	0.0	0.4	11.2	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
Rep_fac_C	PF08542.6	gi|379005452|ref|YP_005261124.1|	-	3.6e-19	68.5	0.1	8.6e-19	67.3	0.0	1.7	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.24	gi|379005452|ref|YP_005261124.1|	-	2e-16	60.3	0.0	3.6e-16	59.5	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|379005452|ref|YP_005261124.1|	-	6.8e-16	58.3	0.0	1.3e-13	50.9	0.0	2.3	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.10	gi|379005452|ref|YP_005261124.1|	-	1.6e-10	40.3	0.0	0.00024	19.9	0.0	2.2	1	1	1	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|379005452|ref|YP_005261124.1|	-	4.4e-09	35.7	0.0	1.1e-08	34.4	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|379005452|ref|YP_005261124.1|	-	6.8e-09	35.9	0.1	0.0028	17.8	0.0	2.5	1	1	1	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|379005452|ref|YP_005261124.1|	-	2.2e-08	34.0	0.0	2.7e-07	30.5	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379005452|ref|YP_005261124.1|	-	2.9e-08	33.9	0.8	0.00028	20.9	0.0	3.5	1	1	2	4	4	4	2	AAA	ATPase	domain
AAA_3	PF07726.6	gi|379005452|ref|YP_005261124.1|	-	6.7e-06	25.7	0.0	1.3e-05	24.8	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.8	gi|379005452|ref|YP_005261124.1|	-	1.2e-05	24.2	0.0	0.015	14.0	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_18	PF13238.1	gi|379005452|ref|YP_005261124.1|	-	1.6e-05	25.1	0.0	0.00046	20.4	0.0	2.4	1	1	0	2	2	2	1	AAA	domain
AAA_17	PF13207.1	gi|379005452|ref|YP_005261124.1|	-	3.6e-05	24.5	0.0	9.7e-05	23.1	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|379005452|ref|YP_005261124.1|	-	6.5e-05	22.4	0.3	0.00028	20.3	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|379005452|ref|YP_005261124.1|	-	0.00011	21.8	0.0	0.00038	20.1	0.0	1.9	2	0	0	2	2	1	1	Part	of	AAA	domain
AAA_5	PF07728.9	gi|379005452|ref|YP_005261124.1|	-	0.00012	21.7	0.1	0.00048	19.8	0.1	2.0	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
PhoH	PF02562.11	gi|379005452|ref|YP_005261124.1|	-	0.00021	20.5	0.0	0.24	10.6	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
Mg_chelatase	PF01078.16	gi|379005452|ref|YP_005261124.1|	-	0.00023	20.4	0.0	0.0053	15.9	0.0	2.6	1	1	2	3	3	3	1	Magnesium	chelatase,	subunit	ChlI
AAA_10	PF12846.2	gi|379005452|ref|YP_005261124.1|	-	0.00029	20.3	0.0	0.38	10.1	0.0	2.5	2	0	0	2	2	2	2	AAA-like	domain
Arch_ATPase	PF01637.13	gi|379005452|ref|YP_005261124.1|	-	0.00038	20.2	0.0	0.17	11.5	0.0	2.3	1	1	1	2	2	2	2	Archaeal	ATPase
DEAD	PF00270.24	gi|379005452|ref|YP_005261124.1|	-	0.00064	19.2	0.1	0.029	13.8	0.0	2.4	1	1	1	2	2	2	1	DEAD/DEAH	box	helicase
IstB_IS21	PF01695.12	gi|379005452|ref|YP_005261124.1|	-	0.00066	19.1	0.0	0.0027	17.1	0.0	1.9	1	1	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_24	PF13479.1	gi|379005452|ref|YP_005261124.1|	-	0.00077	19.1	0.0	0.0018	17.9	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379005452|ref|YP_005261124.1|	-	0.0011	18.7	0.0	0.0022	17.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DNA_pol3_delta	PF06144.8	gi|379005452|ref|YP_005261124.1|	-	0.0022	17.5	0.0	0.0039	16.7	0.0	1.3	1	0	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Sigma54_activ_2	PF14532.1	gi|379005452|ref|YP_005261124.1|	-	0.0033	17.4	0.0	0.012	15.6	0.0	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
RNA_helicase	PF00910.17	gi|379005452|ref|YP_005261124.1|	-	0.0033	17.5	0.0	0.0079	16.3	0.0	1.6	2	0	0	2	2	1	1	RNA	helicase
AAA_11	PF13086.1	gi|379005452|ref|YP_005261124.1|	-	0.0054	16.3	0.0	0.016	14.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|379005452|ref|YP_005261124.1|	-	0.0082	15.7	0.7	0.1	12.1	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
DUF2075	PF09848.4	gi|379005452|ref|YP_005261124.1|	-	0.013	14.4	0.0	0.09	11.7	0.0	2.0	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_28	PF13521.1	gi|379005452|ref|YP_005261124.1|	-	0.017	15.0	0.0	0.035	14.0	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|379005452|ref|YP_005261124.1|	-	0.023	13.6	0.0	0.42	9.4	0.0	2.1	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ResIII	PF04851.10	gi|379005452|ref|YP_005261124.1|	-	0.042	13.6	0.0	0.39	10.5	0.0	2.0	1	1	1	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
KTI12	PF08433.5	gi|379005452|ref|YP_005261124.1|	-	0.047	12.9	0.0	0.079	12.1	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Viral_helicase1	PF01443.13	gi|379005452|ref|YP_005261124.1|	-	0.049	13.1	0.0	0.074	12.5	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
INTS5_C	PF14838.1	gi|379005452|ref|YP_005261124.1|	-	0.069	11.4	0.0	0.099	10.9	0.0	1.1	1	0	0	1	1	1	0	Integrator	complex	subunit	5	C-terminus
ArgK	PF03308.11	gi|379005452|ref|YP_005261124.1|	-	0.088	11.5	0.1	3.1	6.5	0.0	2.4	1	1	1	2	2	2	0	ArgK	protein
NACHT	PF05729.7	gi|379005452|ref|YP_005261124.1|	-	0.11	12.1	0.0	4	7.0	0.0	2.2	1	1	1	2	2	2	0	NACHT	domain
SNF2_N	PF00176.18	gi|379005452|ref|YP_005261124.1|	-	0.12	11.1	0.0	0.65	8.7	0.0	1.9	1	1	1	2	2	2	0	SNF2	family	N-terminal	domain
ABC_tran	PF00005.22	gi|379005452|ref|YP_005261124.1|	-	0.14	12.4	0.0	0.37	11.0	0.0	1.9	1	1	0	1	1	1	0	ABC	transporter
Ribosomal_S7	PF00177.16	gi|379005453|ref|YP_005261125.1|	-	3.4e-47	159.7	0.1	4e-47	159.4	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
DUF1923	PF09083.5	gi|379005453|ref|YP_005261125.1|	-	0.16	11.4	0.2	18	4.9	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1923)
ETF	PF01012.16	gi|379005454|ref|YP_005261126.1|	-	2e-43	147.9	0.5	9.2e-43	145.7	0.1	1.9	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|379005454|ref|YP_005261126.1|	-	5.1e-35	118.9	1.9	8.2e-35	118.2	0.3	2.1	2	1	1	3	3	3	1	Electron	transfer	flavoprotein	FAD-binding	domain
TPP_enzyme_M	PF00205.17	gi|379005454|ref|YP_005261126.1|	-	0.091	12.5	1.3	2.7	7.7	0.5	3.0	2	1	0	2	2	2	0	Thiamine	pyrophosphate	enzyme,	central	domain
ETF	PF01012.16	gi|379005455|ref|YP_005261127.1|	-	2.5e-32	111.8	0.1	3.5e-32	111.4	0.0	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Usp	PF00582.21	gi|379005455|ref|YP_005261127.1|	-	0.03	14.5	0.1	0.11	12.7	0.0	2.0	2	1	0	2	2	2	0	Universal	stress	protein	family
Fer4_2	PF12797.2	gi|379005456|ref|YP_005261128.1|	-	1.9e-08	33.7	13.5	0.00013	21.7	2.1	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|379005456|ref|YP_005261128.1|	-	5.4e-07	29.8	10.3	0.00036	20.8	0.7	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005456|ref|YP_005261128.1|	-	6.5e-06	25.8	27.4	0.00082	19.1	12.5	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379005456|ref|YP_005261128.1|	-	7.8e-06	25.2	3.3	7.8e-06	25.2	2.3	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|379005456|ref|YP_005261128.1|	-	7.8e-06	25.6	9.1	9.8e-06	25.3	6.3	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379005456|ref|YP_005261128.1|	-	0.00013	21.6	16.0	0.00045	19.9	1.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|379005456|ref|YP_005261128.1|	-	0.00095	19.4	13.8	0.011	16.0	1.5	2.2	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379005456|ref|YP_005261128.1|	-	0.0013	18.7	3.2	0.0013	18.7	2.2	2.1	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379005456|ref|YP_005261128.1|	-	0.0018	18.4	18.8	0.0068	16.6	13.2	1.7	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|379005456|ref|YP_005261128.1|	-	0.0039	17.4	1.8	0.0039	17.4	1.2	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|379005456|ref|YP_005261128.1|	-	0.013	16.2	1.0	0.013	16.2	0.7	2.5	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|379005456|ref|YP_005261128.1|	-	0.029	14.2	15.3	0.072	12.9	10.7	1.6	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379005456|ref|YP_005261128.1|	-	0.25	11.7	18.3	0.12	12.8	3.9	2.7	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|379005456|ref|YP_005261128.1|	-	2.5	8.8	22.1	0.18	12.4	5.1	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|379005456|ref|YP_005261128.1|	-	3.5	7.2	16.2	0.067	12.8	4.1	2.0	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Tat	PF00539.13	gi|379005456|ref|YP_005261128.1|	-	4.1	7.1	15.6	2.7	7.7	5.8	2.3	1	1	1	2	2	2	0	Transactivating	regulatory	protein	(Tat)
DAO	PF01266.19	gi|379005457|ref|YP_005261129.1|	-	4.4e-16	58.7	4.9	3.1e-08	32.9	0.3	2.4	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|379005457|ref|YP_005261129.1|	-	1.4e-12	47.2	1.0	8.4e-10	38.1	0.0	2.2	2	0	0	2	2	2	2	Thi4	family
FAD_binding_3	PF01494.14	gi|379005457|ref|YP_005261129.1|	-	8.4e-11	41.5	0.9	2.5e-06	26.8	0.1	2.7	2	1	0	2	2	2	2	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|379005457|ref|YP_005261129.1|	-	2.1e-10	40.9	0.1	4.3e-10	39.9	0.1	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|379005457|ref|YP_005261129.1|	-	8e-10	38.6	0.3	3.8e-09	36.4	0.1	2.2	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|379005457|ref|YP_005261129.1|	-	6.7e-09	34.6	1.4	1.8e-08	33.2	0.2	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|379005457|ref|YP_005261129.1|	-	1.4e-08	33.9	6.2	7.1e-08	31.7	1.3	2.6	1	1	1	2	2	2	1	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|379005457|ref|YP_005261129.1|	-	4.4e-08	32.1	1.6	2.8e-05	22.9	0.0	2.1	1	1	1	2	2	2	2	Tryptophan	halogenase
Pyr_redox_2	PF07992.9	gi|379005457|ref|YP_005261129.1|	-	1.7e-07	31.3	0.1	3.8e-07	30.2	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|379005457|ref|YP_005261129.1|	-	5.2e-07	29.1	1.6	5.2e-07	29.1	1.1	2.0	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379005457|ref|YP_005261129.1|	-	1.3e-06	27.5	0.7	5.1e-06	25.6	0.5	1.8	1	1	0	1	1	1	1	Lycopene	cyclase	protein
GIDA	PF01134.17	gi|379005457|ref|YP_005261129.1|	-	1.7e-05	23.9	0.3	2.7e-05	23.2	0.2	1.3	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Pyr_redox	PF00070.22	gi|379005457|ref|YP_005261129.1|	-	4.8e-05	23.6	2.2	0.0051	17.1	0.5	3.3	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.19	gi|379005457|ref|YP_005261129.1|	-	5.6e-05	22.4	0.9	9.9e-05	21.5	0.0	1.8	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
GDI	PF00996.13	gi|379005457|ref|YP_005261129.1|	-	0.0035	15.7	0.0	2.1	6.5	0.0	2.6	2	1	0	3	3	3	2	GDP	dissociation	inhibitor
NAD_binding_9	PF13454.1	gi|379005457|ref|YP_005261129.1|	-	0.005	16.6	0.4	0.027	14.2	0.3	2.2	1	1	0	1	1	1	1	FAD-NAD(P)-binding
Shikimate_DH	PF01488.15	gi|379005457|ref|YP_005261129.1|	-	0.041	13.9	0.0	0.089	12.8	0.0	1.5	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.13	gi|379005457|ref|YP_005261129.1|	-	0.042	13.5	0.8	0.06	13.0	0.1	1.6	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GMC_oxred_N	PF00732.14	gi|379005457|ref|YP_005261129.1|	-	0.078	12.1	0.1	1.2	8.2	0.0	2.2	2	0	0	2	2	2	0	GMC	oxidoreductase
ThiF	PF00899.16	gi|379005457|ref|YP_005261129.1|	-	0.084	12.6	0.5	0.21	11.4	0.1	1.8	2	0	0	2	2	2	0	ThiF	family
nlz1	PF12402.3	gi|379005457|ref|YP_005261129.1|	-	0.087	13.1	0.1	0.23	11.8	0.1	1.8	1	0	0	1	1	1	0	NocA-like	zinc-finger	protein	1
NAD_binding_7	PF13241.1	gi|379005457|ref|YP_005261129.1|	-	0.1	12.8	0.1	0.22	11.8	0.1	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
ApbA	PF02558.11	gi|379005457|ref|YP_005261129.1|	-	0.12	11.8	0.6	0.3	10.5	0.2	1.8	2	1	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
MoaE	PF02391.12	gi|379005458|ref|YP_005261130.1|	-	9.4e-22	77.0	0.3	1.2e-21	76.6	0.2	1.1	1	0	0	1	1	1	1	MoaE	protein
ThiS	PF02597.15	gi|379005458|ref|YP_005261130.1|	-	3.6e-18	65.7	0.0	7.8e-18	64.6	0.0	1.6	1	0	0	1	1	1	1	ThiS	family
Ub-Mut7C	PF14451.1	gi|379005458|ref|YP_005261130.1|	-	0.012	15.0	0.1	0.039	13.4	0.0	1.8	2	0	0	2	2	2	0	Mut7-C	ubiquitin
TGS	PF02824.16	gi|379005458|ref|YP_005261130.1|	-	0.036	13.9	0.6	0.25	11.2	0.0	2.5	3	0	0	3	3	3	0	TGS	domain
KaiC	PF06745.8	gi|379005461|ref|YP_005261133.1|	-	2.6e-66	222.9	0.7	3e-66	222.7	0.5	1.0	1	0	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005461|ref|YP_005261133.1|	-	1.2e-07	31.3	0.0	1.6e-07	30.8	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|379005461|ref|YP_005261133.1|	-	0.00059	19.0	0.0	0.00086	18.4	0.0	1.3	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
PAXNEB	PF05625.6	gi|379005461|ref|YP_005261133.1|	-	0.025	13.4	0.3	0.036	12.8	0.2	1.2	1	0	0	1	1	1	0	PAXNEB	protein
Rad51	PF08423.6	gi|379005461|ref|YP_005261133.1|	-	0.04	12.8	0.1	0.064	12.1	0.1	1.2	1	0	0	1	1	1	0	Rad51
GvpD	PF07088.6	gi|379005461|ref|YP_005261133.1|	-	0.067	11.5	0.3	0.19	10.0	0.2	1.7	1	1	0	1	1	1	0	GvpD	gas	vesicle	protein
Zot	PF05707.7	gi|379005461|ref|YP_005261133.1|	-	0.091	12.2	0.1	0.42	10.0	0.0	1.8	1	1	1	2	2	2	0	Zonular	occludens	toxin	(Zot)
Fe_dep_repress	PF01325.14	gi|379005463|ref|YP_005261135.1|	-	2.7e-08	33.6	0.1	3.3e-08	33.3	0.1	1.1	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.1	gi|379005463|ref|YP_005261135.1|	-	4e-08	32.5	1.0	5.6e-08	32.0	0.7	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379005463|ref|YP_005261135.1|	-	4.3e-08	32.6	0.1	6e-08	32.2	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|379005463|ref|YP_005261135.1|	-	1.2e-07	31.2	0.6	1.6e-07	30.9	0.4	1.2	1	0	0	1	1	1	1	MarR	family
HTH_Crp_2	PF13545.1	gi|379005463|ref|YP_005261135.1|	-	2.3e-07	30.4	0.1	3e-07	30.1	0.0	1.3	1	1	0	1	1	1	1	Crp-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|379005463|ref|YP_005261135.1|	-	2.4e-07	30.3	0.7	3e-07	30.0	0.5	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|379005463|ref|YP_005261135.1|	-	6.6e-07	28.9	0.1	9e-07	28.5	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|379005463|ref|YP_005261135.1|	-	1.6e-06	27.5	0.3	2e-06	27.3	0.2	1.2	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|379005463|ref|YP_005261135.1|	-	3.9e-06	26.1	1.2	4.8e-06	25.9	0.8	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_11	PF08279.7	gi|379005463|ref|YP_005261135.1|	-	5.9e-06	25.8	0.5	7.6e-06	25.4	0.3	1.1	1	0	0	1	1	1	1	HTH	domain
HTH_28	PF13518.1	gi|379005463|ref|YP_005261135.1|	-	7.9e-06	25.7	0.2	1.1e-05	25.2	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379005463|ref|YP_005261135.1|	-	1.7e-05	24.2	0.1	2.1e-05	23.9	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_23	PF13384.1	gi|379005463|ref|YP_005261135.1|	-	3.1e-05	23.4	0.2	4.3e-05	23.0	0.1	1.2	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.15	gi|379005463|ref|YP_005261135.1|	-	4.2e-05	23.5	0.1	5.2e-05	23.2	0.1	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
Sigma70_r4_2	PF08281.7	gi|379005463|ref|YP_005261135.1|	-	6e-05	22.4	0.3	8.6e-05	21.9	0.2	1.2	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|379005463|ref|YP_005261135.1|	-	0.00017	21.0	2.4	0.00037	19.9	1.7	1.5	1	1	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_38	PF13936.1	gi|379005463|ref|YP_005261135.1|	-	0.00029	20.3	0.2	0.0004	19.8	0.2	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|379005463|ref|YP_005261135.1|	-	0.00035	20.3	0.0	0.00044	19.9	0.0	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|379005463|ref|YP_005261135.1|	-	0.00041	20.0	0.3	0.00053	19.7	0.2	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|379005463|ref|YP_005261135.1|	-	0.00093	19.4	0.2	0.0012	19.1	0.1	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_9	PF08221.6	gi|379005463|ref|YP_005261135.1|	-	0.0028	17.4	0.0	0.0034	17.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Crp	PF00325.15	gi|379005463|ref|YP_005261135.1|	-	0.0034	16.8	0.3	0.0058	16.0	0.2	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	crp	family
HTH_29	PF13551.1	gi|379005463|ref|YP_005261135.1|	-	0.0035	17.4	0.0	0.0044	17.1	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn	helix
Penicillinase_R	PF03965.11	gi|379005463|ref|YP_005261135.1|	-	0.0039	17.2	0.0	0.0047	16.9	0.0	1.1	1	0	0	1	1	1	1	Penicillinase	repressor
DUF977	PF06163.6	gi|379005463|ref|YP_005261135.1|	-	0.0051	16.5	0.1	0.0054	16.4	0.0	1.0	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF977)
FeoC	PF09012.5	gi|379005463|ref|YP_005261135.1|	-	0.0055	16.3	0.0	0.0065	16.1	0.0	1.1	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
GerE	PF00196.14	gi|379005463|ref|YP_005261135.1|	-	0.0093	15.2	0.0	0.014	14.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_17	PF12728.2	gi|379005463|ref|YP_005261135.1|	-	0.011	15.9	0.2	0.018	15.3	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|379005463|ref|YP_005261135.1|	-	0.011	15.2	0.1	0.014	14.9	0.1	1.2	1	0	0	1	1	1	0	LexA	DNA	binding	domain
HTH_3	PF01381.17	gi|379005463|ref|YP_005261135.1|	-	0.013	15.3	0.3	0.017	14.9	0.2	1.3	1	0	0	1	1	1	0	Helix-turn-helix
Sigma54_CBD	PF04963.8	gi|379005463|ref|YP_005261135.1|	-	0.015	14.7	0.0	0.018	14.5	0.0	1.0	1	0	0	1	1	1	0	Sigma-54	factor,	core	binding	domain
EAP30	PF04157.11	gi|379005463|ref|YP_005261135.1|	-	0.022	13.9	0.1	0.025	13.7	0.1	1.0	1	0	0	1	1	1	0	EAP30/Vps36	family
Sigma70_r4	PF04545.11	gi|379005463|ref|YP_005261135.1|	-	0.023	14.0	0.3	0.033	13.4	0.2	1.3	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_CodY	PF08222.6	gi|379005463|ref|YP_005261135.1|	-	0.028	13.7	0.9	0.036	13.4	0.5	1.3	1	1	0	1	1	1	0	CodY	helix-turn-helix	domain
HTH_10	PF04967.7	gi|379005463|ref|YP_005261135.1|	-	0.05	13.1	0.1	0.078	12.5	0.0	1.3	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|379005463|ref|YP_005261135.1|	-	0.059	12.5	0.1	0.083	12.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
Replic_Relax	PF13814.1	gi|379005463|ref|YP_005261135.1|	-	0.071	12.9	0.0	0.077	12.8	0.0	1.1	1	0	0	1	1	1	0	Replication-relaxation
FaeA	PF04703.7	gi|379005463|ref|YP_005261135.1|	-	0.075	13.2	0.0	0.09	12.9	0.0	1.3	1	0	0	1	1	1	0	FaeA-like	protein
HTH_DeoR	PF08220.7	gi|379005463|ref|YP_005261135.1|	-	0.082	12.4	0.0	0.13	11.8	0.0	1.4	1	1	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
DUF2582	PF10771.4	gi|379005463|ref|YP_005261135.1|	-	0.082	12.7	0.0	0.088	12.6	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2582)
Sulfolobus_pRN	PF05584.6	gi|379005463|ref|YP_005261135.1|	-	0.12	12.3	0.2	0.14	12.1	0.1	1.1	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
HTH_31	PF13560.1	gi|379005463|ref|YP_005261135.1|	-	0.12	12.5	0.7	0.26	11.5	0.5	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_40	PF14493.1	gi|379005463|ref|YP_005261135.1|	-	0.13	12.5	0.0	0.15	12.2	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
PCNA_C	PF02747.10	gi|379005465|ref|YP_005261137.1|	-	7.2e-10	38.8	0.0	1e-09	38.3	0.0	1.2	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.13	gi|379005465|ref|YP_005261137.1|	-	2.5e-08	33.4	0.0	4.9e-08	32.5	0.0	1.5	1	0	0	1	1	1	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad9	PF04139.8	gi|379005465|ref|YP_005261137.1|	-	0.0049	16.0	0.0	0.008	15.3	0.0	1.3	1	1	0	1	1	1	1	Rad9
DctQ	PF04290.7	gi|379005466|ref|YP_005261138.1|	-	0.46	10.2	7.2	0.058	13.1	2.1	1.6	2	1	0	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
Sdh_cyt	PF01127.17	gi|379005466|ref|YP_005261138.1|	-	0.85	9.4	7.2	0.36	10.6	2.8	1.9	1	1	1	2	2	2	0	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Sdh_cyt	PF01127.17	gi|379005467|ref|YP_005261139.1|	-	8.6e-09	35.2	2.8	1.3e-08	34.6	1.8	1.4	1	1	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
MacB_PCD	PF12704.2	gi|379005467|ref|YP_005261139.1|	-	0.027	14.0	1.3	0.04	13.4	0.9	1.3	1	0	0	1	1	1	0	MacB-like	periplasmic	core	domain
DUF4044	PF13253.1	gi|379005467|ref|YP_005261139.1|	-	0.041	13.0	3.0	0.088	11.9	2.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4044)
Fer2_3	PF13085.1	gi|379005468|ref|YP_005261140.1|	-	7e-34	115.9	0.1	1.3e-33	115.1	0.0	1.4	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|379005468|ref|YP_005261140.1|	-	5.7e-11	42.2	3.6	7e-11	42.0	1.0	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379005468|ref|YP_005261140.1|	-	2.7e-07	30.8	2.8	6.6e-07	29.6	0.2	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|379005468|ref|YP_005261140.1|	-	3.6e-07	30.4	0.9	3.6e-07	30.4	0.6	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005468|ref|YP_005261140.1|	-	2.1e-06	27.4	2.8	2.1e-06	27.4	2.0	2.2	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379005468|ref|YP_005261140.1|	-	5.5e-06	26.5	9.5	5e-05	23.4	1.1	2.5	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|379005468|ref|YP_005261140.1|	-	9.2e-05	22.7	8.7	0.022	15.1	0.7	2.6	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379005468|ref|YP_005261140.1|	-	0.00015	21.2	2.8	0.00015	21.2	1.9	3.2	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer2	PF00111.22	gi|379005468|ref|YP_005261140.1|	-	0.0007	19.2	0.2	0.0007	19.2	0.1	2.1	2	0	0	2	2	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_2	PF12797.2	gi|379005468|ref|YP_005261140.1|	-	0.00088	19.0	1.3	0.00088	19.0	0.9	3.3	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|379005468|ref|YP_005261140.1|	-	0.0017	18.1	2.1	0.0017	18.1	1.4	2.8	3	0	0	3	3	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379005468|ref|YP_005261140.1|	-	0.023	15.0	0.5	0.023	15.0	0.3	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|379005468|ref|YP_005261140.1|	-	3	7.7	11.3	0.11	12.3	0.7	2.6	3	0	0	3	3	2	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|379005468|ref|YP_005261140.1|	-	9.7	7.0	16.4	0.069	13.8	1.5	3.2	2	2	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
FAD_binding_2	PF00890.19	gi|379005469|ref|YP_005261141.1|	-	1.9e-111	372.9	0.5	2.2e-111	372.6	0.3	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|379005469|ref|YP_005261141.1|	-	4.3e-38	130.0	0.0	6.8e-38	129.4	0.0	1.3	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|379005469|ref|YP_005261141.1|	-	1.9e-07	31.1	0.0	7.1e-06	26.0	0.0	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|379005469|ref|YP_005261141.1|	-	0.16	10.4	0.3	1.2	7.4	0.1	2.5	3	1	0	3	3	3	0	HI0933-like	protein
GIDA	PF01134.17	gi|379005469|ref|YP_005261141.1|	-	0.55	9.0	2.7	5.9	5.6	1.9	2.1	1	1	0	1	1	1	0	Glucose	inhibited	division	protein	A
AAA_19	PF13245.1	gi|379005470|ref|YP_005261142.1|	-	0.097	12.4	0.0	0.23	11.2	0.0	1.6	2	0	0	2	2	2	0	Part	of	AAA	domain
NUDIX	PF00293.23	gi|379005471|ref|YP_005261143.1|	-	2.4e-14	53.1	0.3	2.8e-14	52.9	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
Mesd	PF10185.4	gi|379005471|ref|YP_005261143.1|	-	0.072	12.7	0.1	2.5	7.7	0.0	2.0	1	1	1	2	2	2	0	Chaperone	for	wingless	signalling	and	trafficking	of	LDL	receptor
Peptidase_S8	PF00082.17	gi|379005472|ref|YP_005261144.1|	-	2.3e-23	82.7	13.4	6.1e-23	81.3	9.3	1.7	1	1	0	1	1	1	1	Subtilase	family
EF-hand_1	PF00036.27	gi|379005472|ref|YP_005261144.1|	-	0.2	11.0	0.1	2.2	7.7	0.0	2.4	2	0	0	2	2	2	0	EF	hand
PTH2	PF01981.11	gi|379005474|ref|YP_005261146.1|	-	1.1e-39	134.7	0.1	1.2e-39	134.6	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
DUF1537	PF07005.6	gi|379005474|ref|YP_005261146.1|	-	0.014	15.1	0.3	0.016	14.8	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF1537
TraB	PF01963.12	gi|379005474|ref|YP_005261146.1|	-	0.071	12.5	0.0	0.077	12.4	0.0	1.2	1	0	0	1	1	1	0	TraB	family
Silic_transp	PF03842.8	gi|379005475|ref|YP_005261147.1|	-	0.05	11.6	0.6	0.051	11.6	0.4	1.0	1	0	0	1	1	1	0	Silicon	transporter
SLAC1	PF03595.12	gi|379005475|ref|YP_005261147.1|	-	0.056	12.0	2.5	0.066	11.8	1.8	1.1	1	0	0	1	1	1	0	Voltage-dependent	anion	channel
Oxidored_q2	PF00420.19	gi|379005475|ref|YP_005261147.1|	-	0.13	11.9	2.0	0.14	11.8	1.4	1.1	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF3096	PF11295.3	gi|379005475|ref|YP_005261147.1|	-	0.2	11.2	2.3	0.32	10.5	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3096)
DUF4040	PF13244.1	gi|379005475|ref|YP_005261147.1|	-	0.64	10.0	4.1	1.3	9.0	2.8	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4040)
Radical_SAM	PF04055.16	gi|379005476|ref|YP_005261148.1|	-	4.1e-16	59.5	0.0	3.5e-15	56.5	0.0	2.3	2	0	0	2	2	2	1	Radical	SAM	superfamily
HHH_3	PF12836.2	gi|379005476|ref|YP_005261148.1|	-	0.00083	19.2	0.0	0.0019	18.1	0.0	1.5	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
KH_5	PF13184.1	gi|379005477|ref|YP_005261149.1|	-	3.3e-05	23.5	1.8	0.00012	21.8	0.2	2.1	2	0	0	2	2	2	1	NusA-like	KH	domain
tRNA-synt_2	PF00152.15	gi|379005478|ref|YP_005261150.1|	-	1.4e-84	283.7	0.0	2.1e-84	283.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|379005478|ref|YP_005261150.1|	-	2.8e-11	43.1	1.7	4.7e-11	42.3	1.2	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|379005478|ref|YP_005261150.1|	-	0.0049	16.0	0.1	1.6	7.8	0.0	2.6	2	0	0	2	2	2	2	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2b	PF00587.20	gi|379005478|ref|YP_005261150.1|	-	0.027	14.0	0.1	2	7.9	0.0	2.2	2	0	0	2	2	2	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
SseB_C	PF14581.1	gi|379005478|ref|YP_005261150.1|	-	0.072	12.9	0.5	0.15	11.8	0.0	1.7	2	0	0	2	2	2	0	SseB	protein	C-terminal	domain
PCMT	PF01135.14	gi|379005479|ref|YP_005261151.1|	-	1.3e-66	224.1	0.1	1.5e-66	223.9	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|379005479|ref|YP_005261151.1|	-	1.5e-08	34.3	0.0	1.9e-08	34.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_3	PF01596.12	gi|379005479|ref|YP_005261151.1|	-	3.8e-08	32.6	0.0	5.1e-08	32.2	0.0	1.3	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_18	PF12847.2	gi|379005479|ref|YP_005261151.1|	-	8.9e-08	32.6	0.0	1.3e-07	32.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379005479|ref|YP_005261151.1|	-	1.3e-06	28.3	0.0	2.4e-06	27.5	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_24	PF13578.1	gi|379005479|ref|YP_005261151.1|	-	1.1e-05	26.2	0.0	1.8e-05	25.4	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
GCD14	PF08704.5	gi|379005479|ref|YP_005261151.1|	-	1.3e-05	24.8	0.0	1.6e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
MTS	PF05175.9	gi|379005479|ref|YP_005261151.1|	-	0.00015	21.1	0.0	0.00023	20.5	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|379005479|ref|YP_005261151.1|	-	0.0023	17.1	0.0	0.0031	16.6	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_23	PF13489.1	gi|379005479|ref|YP_005261151.1|	-	0.011	15.5	0.0	0.016	14.9	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
CMAS	PF02353.15	gi|379005479|ref|YP_005261151.1|	-	0.014	14.5	0.0	0.017	14.2	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
SEF14_adhesin	PF06443.6	gi|379005479|ref|YP_005261151.1|	-	0.019	14.6	0.0	0.028	14.0	0.0	1.3	1	0	0	1	1	1	0	SEF14-like	adhesin
Methyltransf_25	PF13649.1	gi|379005479|ref|YP_005261151.1|	-	0.025	14.9	0.0	0.071	13.4	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
TRI9	PF08195.6	gi|379005479|ref|YP_005261151.1|	-	0.049	13.2	0.2	0.15	11.6	0.0	1.9	2	0	0	2	2	2	0	TRI9	protein
Fibrillarin	PF01269.12	gi|379005479|ref|YP_005261151.1|	-	0.058	12.3	0.1	0.098	11.5	0.0	1.3	1	0	0	1	1	1	0	Fibrillarin
DUF938	PF06080.7	gi|379005479|ref|YP_005261151.1|	-	0.14	11.6	0.0	0.22	11.0	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF938)
Methyltransf_12	PF08242.7	gi|379005479|ref|YP_005261151.1|	-	0.15	12.5	0.0	0.21	12.0	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_28	PF02636.12	gi|379005479|ref|YP_005261151.1|	-	0.15	11.4	0.0	0.19	11.0	0.0	1.1	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
XPG_I	PF00867.13	gi|379005480|ref|YP_005261152.1|	-	6.3e-28	96.6	0.0	1e-27	96.0	0.0	1.3	1	0	0	1	1	1	1	XPG	I-region
XPG_N	PF00752.12	gi|379005480|ref|YP_005261152.1|	-	1.7e-23	82.7	0.0	3.5e-23	81.7	0.0	1.5	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|379005480|ref|YP_005261152.1|	-	1.8e-06	28.1	0.0	4.3e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_5	PF14520.1	gi|379005480|ref|YP_005261152.1|	-	0.0022	18.1	0.0	0.012	15.8	0.0	2.3	2	1	0	2	2	2	1	Helix-hairpin-helix	domain
DUF91	PF01939.11	gi|379005480|ref|YP_005261152.1|	-	0.071	12.2	0.9	0.3	10.2	0.6	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF91
5_3_exonuc_N	PF02739.11	gi|379005480|ref|YP_005261152.1|	-	0.14	11.5	0.0	0.24	10.7	0.0	1.3	1	0	0	1	1	1	0	5'-3'	exonuclease,	N-terminal	resolvase-like	domain
DUF3847	PF12958.2	gi|379005481|ref|YP_005261153.1|	-	0.055	13.2	0.1	0.076	12.7	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3847)
TypeIII_RM_meth	PF12564.3	gi|379005481|ref|YP_005261153.1|	-	0.18	11.7	0.9	0.27	11.2	0.1	1.6	2	1	0	2	2	2	0	Type	III	restriction/modification	enzyme	methylation	subunit
AAA	PF00004.24	gi|379005482|ref|YP_005261154.1|	-	7.9e-100	330.2	0.0	1.1e-49	167.9	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|379005482|ref|YP_005261154.1|	-	2.2e-27	94.8	0.8	2.5e-26	91.4	1.3	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|379005482|ref|YP_005261154.1|	-	1.1e-15	57.3	0.0	3.1e-07	29.6	0.0	2.6	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|379005482|ref|YP_005261154.1|	-	1.9e-15	57.1	0.2	3.8e-06	27.0	0.0	4.8	3	2	0	3	3	2	2	AAA	domain
TIP49	PF06068.8	gi|379005482|ref|YP_005261154.1|	-	1.2e-13	50.5	1.0	8.7e-06	24.7	0.0	3.4	3	0	0	3	3	3	2	TIP49	C-terminus
AAA_2	PF07724.9	gi|379005482|ref|YP_005261154.1|	-	2.2e-13	50.5	0.0	1.2e-07	31.7	0.0	2.6	2	1	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_5	PF07728.9	gi|379005482|ref|YP_005261154.1|	-	3.8e-13	49.3	0.8	1.7e-05	24.5	0.1	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
CDC48_2	PF02933.12	gi|379005482|ref|YP_005261154.1|	-	1e-12	47.5	0.5	2.3e-12	46.3	0.3	1.7	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_16	PF13191.1	gi|379005482|ref|YP_005261154.1|	-	1.4e-12	48.0	0.1	6.2e-06	26.3	0.0	3.2	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_33	PF13671.1	gi|379005482|ref|YP_005261154.1|	-	2.3e-12	46.9	0.0	4.6e-06	26.5	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|379005482|ref|YP_005261154.1|	-	3.5e-12	47.2	0.1	9e-06	26.5	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|379005482|ref|YP_005261154.1|	-	4.1e-11	42.8	0.0	1.5e-05	24.8	0.0	2.6	3	0	0	3	3	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|379005482|ref|YP_005261154.1|	-	5.4e-10	38.9	0.1	0.001	18.5	0.0	2.8	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.7	gi|379005482|ref|YP_005261154.1|	-	1.1e-09	37.6	0.0	0.00013	21.1	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
AAA_28	PF13521.1	gi|379005482|ref|YP_005261154.1|	-	2.6e-09	37.2	0.0	0.0006	19.8	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
UFD1	PF03152.9	gi|379005482|ref|YP_005261154.1|	-	3.2e-09	36.1	0.3	6.4e-09	35.1	0.2	1.4	1	0	0	1	1	1	1	Ubiquitin	fusion	degradation	protein	UFD1
AAA_19	PF13245.1	gi|379005482|ref|YP_005261154.1|	-	3.7e-08	32.9	3.8	0.0013	18.4	0.0	3.1	3	0	0	3	3	2	2	Part	of	AAA	domain
AAA_18	PF13238.1	gi|379005482|ref|YP_005261154.1|	-	5.3e-08	33.2	0.0	0.0065	16.7	0.0	2.8	2	0	0	2	2	2	2	AAA	domain
Sigma54_activ_2	PF14532.1	gi|379005482|ref|YP_005261154.1|	-	3.3e-07	30.4	0.0	0.017	15.1	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
Mg_chelatase	PF01078.16	gi|379005482|ref|YP_005261154.1|	-	4.1e-07	29.3	1.0	0.022	13.9	0.1	2.6	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|379005482|ref|YP_005261154.1|	-	2.5e-06	27.0	0.2	0.074	12.5	0.0	3.7	3	1	0	3	3	3	2	Sigma-54	interaction	domain
PhoH	PF02562.11	gi|379005482|ref|YP_005261154.1|	-	6.2e-06	25.5	0.5	0.11	11.6	0.0	2.6	2	0	0	2	2	2	2	PhoH-like	protein
RNA_helicase	PF00910.17	gi|379005482|ref|YP_005261154.1|	-	9e-06	25.8	0.0	0.2	11.8	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_25	PF13481.1	gi|379005482|ref|YP_005261154.1|	-	1.6e-05	24.3	11.1	0.065	12.6	0.1	4.3	2	2	1	4	4	4	2	AAA	domain
DUF815	PF05673.8	gi|379005482|ref|YP_005261154.1|	-	1.8e-05	23.7	0.0	0.12	11.2	0.0	2.6	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
KaiC	PF06745.8	gi|379005482|ref|YP_005261154.1|	-	2.2e-05	23.6	1.8	0.29	10.2	0.0	3.5	3	1	1	4	4	3	2	KaiC
NACHT	PF05729.7	gi|379005482|ref|YP_005261154.1|	-	2.6e-05	23.9	0.7	0.55	9.8	0.0	4.0	4	0	0	4	4	4	1	NACHT	domain
Vps4_C	PF09336.5	gi|379005482|ref|YP_005261154.1|	-	5.3e-05	23.0	0.2	0.02	14.8	0.0	3.4	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
Arch_ATPase	PF01637.13	gi|379005482|ref|YP_005261154.1|	-	6.4e-05	22.7	0.3	0.083	12.5	0.1	3.5	2	2	2	4	4	4	1	Archaeal	ATPase
ABC_tran	PF00005.22	gi|379005482|ref|YP_005261154.1|	-	8.2e-05	22.9	0.0	0.34	11.2	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.1	gi|379005482|ref|YP_005261154.1|	-	0.00011	21.9	0.0	0.43	10.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_3	PF07726.6	gi|379005482|ref|YP_005261154.1|	-	0.00026	20.5	0.0	0.7	9.5	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NTPase_1	PF03266.10	gi|379005482|ref|YP_005261154.1|	-	0.0007	19.3	4.5	2.1	8.0	0.0	4.7	3	2	2	5	5	4	1	NTPase
Parvo_NS1	PF01057.12	gi|379005482|ref|YP_005261154.1|	-	0.00074	18.4	0.1	0.87	8.4	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
T2SE	PF00437.15	gi|379005482|ref|YP_005261154.1|	-	0.00078	18.4	0.0	0.37	9.6	0.0	2.7	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
DUF2075	PF09848.4	gi|379005482|ref|YP_005261154.1|	-	0.0012	17.9	0.0	0.5	9.2	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
ATP-synt_ab	PF00006.20	gi|379005482|ref|YP_005261154.1|	-	0.0013	18.3	0.0	1.6	8.2	0.0	2.5	2	0	0	2	2	2	2	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ResIII	PF04851.10	gi|379005482|ref|YP_005261154.1|	-	0.0014	18.5	0.0	0.75	9.5	0.0	2.3	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SKI	PF01202.17	gi|379005482|ref|YP_005261154.1|	-	0.0019	18.0	0.1	2.8	7.7	0.0	3.2	4	0	0	4	4	3	0	Shikimate	kinase
Bac_DnaA	PF00308.13	gi|379005482|ref|YP_005261154.1|	-	0.0026	17.4	0.0	0.42	10.2	0.0	2.8	2	0	0	2	2	2	1	Bacterial	dnaA	protein
AAA_30	PF13604.1	gi|379005482|ref|YP_005261154.1|	-	0.0026	17.3	0.7	1.6	8.2	0.0	3.3	4	0	0	4	4	3	1	AAA	domain
Viral_helicase1	PF01443.13	gi|379005482|ref|YP_005261154.1|	-	0.0031	17.0	0.0	0.14	11.6	0.0	2.3	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
NB-ARC	PF00931.17	gi|379005482|ref|YP_005261154.1|	-	0.0045	15.8	0.0	1.2	7.8	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
PduV-EutP	PF10662.4	gi|379005482|ref|YP_005261154.1|	-	0.0051	16.3	0.0	0.96	8.9	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_11	PF13086.1	gi|379005482|ref|YP_005261154.1|	-	0.0053	16.3	0.0	2.8	7.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|379005482|ref|YP_005261154.1|	-	0.0057	16.2	0.2	2.9	7.5	0.0	2.6	2	1	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Molydop_binding	PF01568.16	gi|379005482|ref|YP_005261154.1|	-	0.0083	15.9	0.2	0.1	12.4	0.1	2.8	3	0	0	3	3	2	1	Molydopterin	dinucleotide	binding	domain
Guanylate_kin	PF00625.16	gi|379005482|ref|YP_005261154.1|	-	0.0096	15.3	0.3	16	4.8	0.0	3.6	3	1	1	4	4	3	0	Guanylate	kinase
AAA_29	PF13555.1	gi|379005482|ref|YP_005261154.1|	-	0.042	13.3	0.0	11	5.5	0.0	2.4	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
cobW	PF02492.14	gi|379005482|ref|YP_005261154.1|	-	0.057	12.8	0.2	9.2	5.6	0.0	2.6	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Cytidylate_kin2	PF13189.1	gi|379005482|ref|YP_005261154.1|	-	0.072	12.9	0.1	3.5	7.4	0.0	2.3	2	0	0	2	2	2	0	Cytidylate	kinase-like	family
IPT	PF01745.11	gi|379005482|ref|YP_005261154.1|	-	0.083	12.0	0.5	2.1	7.4	0.1	2.3	2	0	0	2	2	2	0	Isopentenyl	transferase
AAA_10	PF12846.2	gi|379005482|ref|YP_005261154.1|	-	0.092	12.1	2.6	14	5.0	0.0	3.5	2	2	1	4	4	4	0	AAA-like	domain
KTI12	PF08433.5	gi|379005482|ref|YP_005261154.1|	-	0.11	11.6	0.0	11	5.1	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AFG1_ATPase	PF03969.11	gi|379005482|ref|YP_005261154.1|	-	0.13	11.0	0.0	13	4.5	0.0	2.4	3	0	0	3	3	2	0	AFG1-like	ATPase
SRPRB	PF09439.5	gi|379005482|ref|YP_005261154.1|	-	0.15	11.3	0.0	12	5.1	0.0	2.4	2	1	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
EF1_GNE	PF00736.14	gi|379005483|ref|YP_005261155.1|	-	1.8e-18	65.9	0.2	1.9e-18	65.8	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF3970	PF13113.1	gi|379005483|ref|YP_005261155.1|	-	0.018	14.7	0.3	0.23	11.1	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3970)
Rad51	PF08423.6	gi|379005484|ref|YP_005261156.1|	-	2.2e-15	56.2	0.0	2.5e-15	56.0	0.0	1.0	1	0	0	1	1	1	1	Rad51
SBP_bac_8	PF13416.1	gi|379005485|ref|YP_005261157.1|	-	1.5e-18	67.5	0.0	2.1e-18	67.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|379005485|ref|YP_005261157.1|	-	3.1e-18	66.5	1.5	3.3e-18	66.4	0.4	1.5	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
BPD_transp_1	PF00528.17	gi|379005486|ref|YP_005261158.1|	-	5.8e-09	35.7	22.0	5.8e-09	35.7	15.2	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|379005487|ref|YP_005261159.1|	-	7.2e-10	38.6	18.7	7.2e-10	38.6	13.0	2.2	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Usp	PF00582.21	gi|379005488|ref|YP_005261160.1|	-	1.2e-35	122.7	5.0	1.3e-35	122.6	3.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
F_bP_aldolase	PF01116.15	gi|379005488|ref|YP_005261160.1|	-	0.0033	16.5	0.4	0.041	12.9	0.0	2.0	1	1	1	2	2	2	2	Fructose-bisphosphate	aldolase	class-II
Methyltransf_18	PF12847.2	gi|379005488|ref|YP_005261160.1|	-	0.0087	16.6	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
SIS	PF01380.17	gi|379005488|ref|YP_005261160.1|	-	0.017	14.7	0.2	0.18	11.3	0.1	2.0	2	0	0	2	2	2	0	SIS	domain
Pilus_CpaD	PF09476.5	gi|379005488|ref|YP_005261160.1|	-	0.031	13.7	1.8	0.11	11.9	0.5	2.0	1	1	1	2	2	2	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
ADH_zinc_N	PF00107.21	gi|379005488|ref|YP_005261160.1|	-	0.039	13.4	0.4	0.089	12.3	0.3	1.6	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
SpoU_sub_bind	PF08032.7	gi|379005488|ref|YP_005261160.1|	-	0.13	12.4	0.0	0.27	11.4	0.0	1.7	1	1	0	1	1	1	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
Endonuclease_5	PF04493.9	gi|379005489|ref|YP_005261161.1|	-	2.2e-48	164.3	0.5	3.7e-48	163.5	0.3	1.3	1	1	0	1	1	1	1	Endonuclease	V
DUF357	PF04010.8	gi|379005490|ref|YP_005261162.1|	-	7.2e-21	73.6	1.4	1.2e-20	72.9	1.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF357)
CTP_transf_2	PF01467.21	gi|379005490|ref|YP_005261162.1|	-	7.3e-10	39.1	0.0	4.3e-09	36.6	0.0	2.0	2	0	0	2	2	2	1	Cytidylyltransferase
RPN7	PF10602.4	gi|379005490|ref|YP_005261162.1|	-	0.041	13.2	0.1	0.071	12.4	0.1	1.3	1	0	0	1	1	1	0	26S	proteasome	subunit	RPN7
Pantoate_ligase	PF02569.10	gi|379005490|ref|YP_005261162.1|	-	0.063	12.0	0.0	1.5	7.5	0.0	2.1	2	0	0	2	2	2	0	Pantoate-beta-alanine	ligase
UPF0179	PF03684.8	gi|379005491|ref|YP_005261163.1|	-	3.8e-38	130.2	4.2	4.6e-38	130.0	2.9	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0179)
Fer4_21	PF14697.1	gi|379005491|ref|YP_005261163.1|	-	0.045	13.6	1.9	2	8.3	0.2	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
RIO1	PF01163.17	gi|379005492|ref|YP_005261164.1|	-	3.8e-36	124.2	0.0	5.5e-36	123.6	0.0	1.2	1	0	0	1	1	1	1	RIO1	family
Rio2_N	PF09202.6	gi|379005492|ref|YP_005261164.1|	-	1.3e-25	89.2	0.3	2.7e-25	88.2	0.2	1.5	1	0	0	1	1	1	1	Rio2,	N-terminal
APH	PF01636.18	gi|379005492|ref|YP_005261164.1|	-	2.4e-09	37.3	1.5	0.0012	18.6	0.1	2.5	1	1	1	2	2	2	2	Phosphotransferase	enzyme	family
WaaY	PF06176.6	gi|379005492|ref|YP_005261164.1|	-	0.0011	18.1	0.0	0.015	14.5	0.0	2.1	2	0	0	2	2	2	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Pkinase	PF00069.20	gi|379005492|ref|YP_005261164.1|	-	0.0059	15.7	0.0	0.011	14.8	0.0	1.5	1	1	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|379005492|ref|YP_005261164.1|	-	0.084	11.9	0.0	0.57	9.2	0.0	2.1	1	1	0	1	1	1	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
DUF460	PF04312.8	gi|379005493|ref|YP_005261165.1|	-	2.9e-47	159.6	0.1	7.2e-47	158.3	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
Cep57_MT_bd	PF06657.8	gi|379005493|ref|YP_005261165.1|	-	6.4e-05	22.8	3.1	6.4e-05	22.8	2.2	2.2	2	0	0	2	2	1	1	Centrosome	microtubule-binding	domain	of	Cep57
ADIP	PF11559.3	gi|379005493|ref|YP_005261165.1|	-	0.00033	20.5	2.8	0.00073	19.4	1.9	1.5	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
bZIP_1	PF00170.16	gi|379005493|ref|YP_005261165.1|	-	0.00042	20.2	2.6	0.00042	20.2	1.8	2.6	2	0	0	2	2	2	1	bZIP	transcription	factor
Seryl_tRNA_N	PF02403.17	gi|379005493|ref|YP_005261165.1|	-	0.015	15.3	6.3	0.015	15.3	4.3	3.2	2	1	1	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
GAS	PF13851.1	gi|379005493|ref|YP_005261165.1|	-	0.023	13.8	13.8	0.036	13.2	7.8	2.2	1	1	1	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
APG6	PF04111.7	gi|379005493|ref|YP_005261165.1|	-	0.041	12.9	6.4	0.075	12.0	4.4	1.4	1	0	0	1	1	1	0	Autophagy	protein	Apg6
FeoA	PF04023.9	gi|379005493|ref|YP_005261165.1|	-	0.055	13.4	0.4	0.26	11.2	0.1	2.3	2	0	0	2	2	2	0	FeoA	domain
TMCO5	PF14992.1	gi|379005493|ref|YP_005261165.1|	-	0.061	12.4	5.3	0.13	11.3	3.7	1.6	1	0	0	1	1	1	0	TMCO5	family
RNase_E_G	PF10150.4	gi|379005493|ref|YP_005261165.1|	-	0.063	12.4	4.8	0.36	10.0	1.8	2.4	1	1	0	2	2	2	0	Ribonuclease	E/G	family
IncA	PF04156.9	gi|379005493|ref|YP_005261165.1|	-	0.11	12.1	3.5	0.26	10.8	2.4	1.7	1	0	0	1	1	1	0	IncA	protein
Phage_GP20	PF06810.6	gi|379005493|ref|YP_005261165.1|	-	0.13	11.6	3.3	0.42	10.0	2.3	1.9	1	0	0	1	1	1	0	Phage	minor	structural	protein	GP20
Viral_P18	PF04521.8	gi|379005493|ref|YP_005261165.1|	-	0.14	11.6	4.8	0.18	11.2	1.1	2.6	1	1	0	2	2	2	0	ssRNA	positive	strand	viral	18kD	cysteine	rich	protein
Ax_dynein_light	PF10211.4	gi|379005493|ref|YP_005261165.1|	-	0.21	11.3	8.2	0.039	13.7	2.8	1.9	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
FlxA	PF14282.1	gi|379005493|ref|YP_005261165.1|	-	0.23	11.4	0.6	0.48	10.4	0.4	1.4	1	0	0	1	1	1	0	FlxA-like	protein
TMF_DNA_bd	PF12329.3	gi|379005493|ref|YP_005261165.1|	-	0.3	10.9	9.6	0.92	9.3	2.3	2.7	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
DivIC	PF04977.10	gi|379005493|ref|YP_005261165.1|	-	0.4	10.1	7.1	0.35	10.3	1.1	3.0	2	0	0	2	2	2	0	Septum	formation	initiator
Prefoldin_2	PF01920.15	gi|379005493|ref|YP_005261165.1|	-	0.65	9.7	11.7	1.9	8.2	1.7	3.5	2	1	1	3	3	3	0	Prefoldin	subunit
bZIP_2	PF07716.10	gi|379005493|ref|YP_005261165.1|	-	0.78	9.6	10.0	0.088	12.6	2.6	2.6	2	0	0	2	2	2	0	Basic	region	leucine	zipper
DUF972	PF06156.8	gi|379005493|ref|YP_005261165.1|	-	1.2	9.5	5.3	2.9	8.2	1.6	2.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
DUF4140	PF13600.1	gi|379005493|ref|YP_005261165.1|	-	1.9	8.9	7.8	87	3.6	4.3	3.2	2	1	0	2	2	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
DUF342	PF03961.8	gi|379005493|ref|YP_005261165.1|	-	2.6	6.3	6.9	1.6	7.0	3.1	1.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF342)
TMF_TATA_bd	PF12325.3	gi|379005493|ref|YP_005261165.1|	-	3.6	7.3	11.2	1.3	8.7	5.2	2.1	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
OmpH	PF03938.9	gi|379005493|ref|YP_005261165.1|	-	6.9	6.5	8.8	25	4.7	6.1	1.9	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
DUF4407	PF14362.1	gi|379005493|ref|YP_005261165.1|	-	9.7	5.0	10.0	10	4.9	4.0	2.7	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4407)
AdoMet_Synthase	PF01941.14	gi|379005494|ref|YP_005261166.1|	-	7e-171	568.0	2.8	7.8e-171	567.9	2.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
S-AdoMet_synt_N	PF00438.15	gi|379005494|ref|YP_005261166.1|	-	0.21	11.8	4.8	0.75	10.0	0.0	3.3	3	1	0	3	3	3	0	S-adenosylmethionine	synthetase,	N-terminal	domain
LSM	PF01423.17	gi|379005495|ref|YP_005261167.1|	-	9.4e-16	57.1	0.0	1.1e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|379005495|ref|YP_005261167.1|	-	0.12	12.2	0.1	0.15	12.0	0.0	1.2	1	0	0	1	1	1	0	Ataxin	2	SM	domain
RNA_pol_N	PF01194.12	gi|379005496|ref|YP_005261168.1|	-	3.8e-28	97.2	0.2	4.3e-28	97.1	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.7	gi|379005496|ref|YP_005261168.1|	-	0.014	15.4	0.1	0.026	14.6	0.1	1.5	1	1	0	1	1	1	0	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
DUF2414	PF10309.4	gi|379005496|ref|YP_005261168.1|	-	0.11	12.2	0.0	0.11	12.1	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2414)
Ribosomal_S9	PF00380.14	gi|379005497|ref|YP_005261169.1|	-	1.2e-32	112.6	0.1	1.5e-32	112.4	0.1	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.13	gi|379005498|ref|YP_005261170.1|	-	1.5e-26	92.9	0.2	2e-26	92.5	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L13
Ribosomal_L18e	PF00828.14	gi|379005499|ref|YP_005261171.1|	-	1.1e-15	58.1	0.7	1.3e-15	57.8	0.5	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
RNA_pol_A_bac	PF01000.21	gi|379005500|ref|YP_005261172.1|	-	9.5e-25	86.9	0.0	1.5e-24	86.2	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|379005500|ref|YP_005261172.1|	-	2.6e-13	48.8	0.0	3.4e-13	48.5	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Ribosom_S12_S23	PF00164.20	gi|379005501|ref|YP_005261173.1|	-	1.4e-35	121.3	0.2	1.6e-35	121.1	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
KH_2	PF07650.12	gi|379005502|ref|YP_005261174.1|	-	9e-19	66.8	4.8	1.2e-13	50.3	0.2	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|379005502|ref|YP_005261174.1|	-	6e-11	41.9	3.3	8.8e-11	41.4	0.4	2.1	2	0	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.1	gi|379005502|ref|YP_005261174.1|	-	7.1e-06	25.5	0.4	0.0044	16.6	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|379005502|ref|YP_005261174.1|	-	8.3e-05	22.1	7.3	0.0025	17.3	0.4	2.7	1	1	2	3	3	3	2	KH	domain
KH_3	PF13014.1	gi|379005502|ref|YP_005261174.1|	-	0.54	9.9	5.9	3.9	7.2	0.0	2.9	3	0	0	3	3	3	0	KH	domain
Ribosomal_L7Ae	PF01248.21	gi|379005503|ref|YP_005261175.1|	-	6.5e-16	57.6	0.0	7.7e-16	57.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
Peripla_BP_4	PF13407.1	gi|379005503|ref|YP_005261175.1|	-	0.093	12.0	0.1	0.11	11.8	0.1	1.1	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
RNA_pol_Rpb1_5	PF04998.12	gi|379005504|ref|YP_005261176.1|	-	3.1e-46	157.8	0.0	5.3e-46	157.1	0.0	1.3	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
PCI	PF01399.22	gi|379005504|ref|YP_005261176.1|	-	0.1	12.9	0.5	0.33	11.2	0.0	2.0	2	0	0	2	2	2	0	PCI	domain
HMA	PF00403.21	gi|379005504|ref|YP_005261176.1|	-	0.77	9.9	7.3	2.4	8.3	0.2	3.7	2	1	2	4	4	4	0	Heavy-metal-associated	domain
RNA_pol_Rpb1_1	PF04997.7	gi|379005505|ref|YP_005261177.1|	-	3.1e-90	302.8	0.0	1.5e-89	300.5	0.0	1.9	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|379005505|ref|YP_005261177.1|	-	1.5e-67	226.6	0.0	2.5e-67	225.9	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.13	gi|379005505|ref|YP_005261177.1|	-	5.6e-32	110.6	0.0	1.1e-31	109.7	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_5	PF04998.12	gi|379005505|ref|YP_005261177.1|	-	8.3e-28	97.4	0.1	1.5e-27	96.6	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
RNA_pol_Rpb1_4	PF05000.12	gi|379005505|ref|YP_005261177.1|	-	2e-26	91.8	0.0	3.6e-26	90.9	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
zf-ribbon_3	PF13248.1	gi|379005505|ref|YP_005261177.1|	-	0.013	14.6	8.8	0.43	9.8	0.0	3.3	4	0	0	4	4	4	0	zinc-ribbon	domain
Ribosomal_L32e	PF01655.13	gi|379005505|ref|YP_005261177.1|	-	0.041	13.9	0.6	0.11	12.5	0.4	1.6	1	0	0	1	1	1	0	Ribosomal	protein	L32
zf-ISL3	PF14690.1	gi|379005505|ref|YP_005261177.1|	-	0.15	12.0	10.3	2.1	8.4	0.4	3.8	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
CpXC	PF14353.1	gi|379005505|ref|YP_005261177.1|	-	0.24	11.3	4.5	0.94	9.4	0.0	2.8	3	1	0	3	3	2	0	CpXC	protein
Auto_anti-p27	PF06677.7	gi|379005505|ref|YP_005261177.1|	-	0.26	11.0	0.0	0.26	11.0	0.0	3.1	3	0	0	3	3	3	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zinc_ribbon_5	PF13719.1	gi|379005505|ref|YP_005261177.1|	-	0.32	10.6	4.3	29	4.3	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
DUF164	PF02591.10	gi|379005505|ref|YP_005261177.1|	-	0.46	10.3	6.0	4.1	7.3	0.1	2.9	3	0	0	3	3	3	0	Putative	zinc	ribbon	domain
zinc_ribbon_4	PF13717.1	gi|379005505|ref|YP_005261177.1|	-	0.55	9.9	3.9	29	4.4	0.1	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|379005505|ref|YP_005261177.1|	-	1	9.1	7.0	2.3	7.9	0.1	2.9	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
OrfB_Zn_ribbon	PF07282.6	gi|379005505|ref|YP_005261177.1|	-	1.9	8.2	3.6	28	4.4	0.1	3.2	3	0	0	3	3	3	0	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|379005505|ref|YP_005261177.1|	-	4.7	7.1	9.3	20	5.0	3.5	2.9	2	1	0	2	2	2	0	Double	zinc	ribbon
RNA_pol_Rpb2_6	PF00562.23	gi|379005506|ref|YP_005261178.1|	-	1.8e-130	435.1	0.0	2.5e-130	434.6	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.10	gi|379005506|ref|YP_005261178.1|	-	1.4e-54	184.1	0.0	2e-54	183.6	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|379005506|ref|YP_005261178.1|	-	5.3e-29	100.9	0.0	9.4e-29	100.1	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_3	PF04565.11	gi|379005506|ref|YP_005261178.1|	-	2e-26	91.5	0.0	4.2e-26	90.4	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_7	PF04560.15	gi|379005506|ref|YP_005261178.1|	-	8.2e-26	90.0	0.0	2.5e-25	88.5	0.0	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_4	PF04566.8	gi|379005506|ref|YP_005261178.1|	-	1.7e-20	72.6	0.7	4.8e-20	71.1	0.5	1.9	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.12	gi|379005506|ref|YP_005261178.1|	-	2.1e-12	46.8	0.5	5.8e-12	45.4	0.3	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
RNA_pol_Rpb5_C	PF01191.14	gi|379005507|ref|YP_005261179.1|	-	2.4e-23	81.5	0.0	2.7e-23	81.3	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
ATP-synt_ab	PF00006.20	gi|379005508|ref|YP_005261180.1|	-	1.8e-82	276.0	0.0	2.4e-82	275.6	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|379005508|ref|YP_005261180.1|	-	1e-13	51.7	0.3	1.9e-13	50.9	0.2	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|379005508|ref|YP_005261180.1|	-	3.1e-13	49.7	0.2	7e-13	48.5	0.1	1.7	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
Peptidase_M23	PF01551.17	gi|379005508|ref|YP_005261180.1|	-	0.033	14.2	0.0	1.1	9.3	0.0	2.5	2	0	0	2	2	2	0	Peptidase	family	M23
Biotin_lipoyl_2	PF13533.1	gi|379005508|ref|YP_005261180.1|	-	0.077	12.6	0.0	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	Biotin-lipoyl	like
vATP-synt_E	PF01991.13	gi|379005509|ref|YP_005261181.1|	-	1.5e-15	56.9	7.3	3.1e-15	55.9	5.1	1.5	1	1	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
Bcr-Abl_Oligo	PF09036.5	gi|379005509|ref|YP_005261181.1|	-	0.00064	19.6	0.9	0.0014	18.5	0.4	1.6	1	1	1	2	2	2	1	Bcr-Abl	oncoprotein	oligomerisation	domain
ACCA	PF03255.9	gi|379005509|ref|YP_005261181.1|	-	0.0013	18.2	0.5	0.0023	17.4	0.3	1.4	1	0	0	1	1	1	1	Acetyl	co-enzyme	A	carboxylase	carboxyltransferase	alpha	subunit
PKK	PF12474.3	gi|379005509|ref|YP_005261181.1|	-	0.026	14.2	1.3	0.066	12.9	0.9	1.6	1	1	0	1	1	1	0	Polo	kinase	kinase
FliH	PF02108.11	gi|379005509|ref|YP_005261181.1|	-	0.032	14.0	0.1	0.075	12.9	0.0	1.7	1	1	0	1	1	1	0	Flagellar	assembly	protein	FliH
NAAA-beta	PF15508.1	gi|379005509|ref|YP_005261181.1|	-	0.059	13.7	0.0	0.22	11.9	0.0	1.9	1	1	1	2	2	2	0	beta	subunit	of	N-acylethanolamine-hydrolyzing	acid	amidase
DUF2115	PF09888.4	gi|379005509|ref|YP_005261181.1|	-	0.43	10.6	2.7	0.66	10.0	1.9	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2115)
ATP-synt_F	PF01990.12	gi|379005510|ref|YP_005261182.1|	-	1.1e-12	48.2	0.1	1.2e-12	47.9	0.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
DUF46	PF01864.12	gi|379005511|ref|YP_005261183.1|	-	9.1e-39	133.1	2.9	2e-38	131.9	2.0	1.5	1	1	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|379005511|ref|YP_005261183.1|	-	4.4e-05	23.2	0.2	4.4e-05	23.2	0.2	1.5	2	0	0	2	2	2	1	Cytidylyltransferase	family
TM_helix	PF05552.7	gi|379005511|ref|YP_005261183.1|	-	2.1	8.0	7.1	2.6	7.8	0.1	2.9	3	0	0	3	3	3	0	Conserved	TM	helix
zf-Di19	PF05605.7	gi|379005512|ref|YP_005261184.1|	-	1.5e-09	37.8	4.4	1e-06	28.7	1.5	2.3	2	0	0	2	2	2	2	Drought	induced	19	protein	(Di19),	zinc-binding
zf-C2H2	PF00096.21	gi|379005512|ref|YP_005261184.1|	-	8.5e-09	35.2	8.7	2.1e-05	24.5	0.0	3.5	3	0	0	3	3	3	2	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|379005512|ref|YP_005261184.1|	-	1e-07	31.7	5.6	0.0061	16.8	0.0	3.4	3	0	0	3	3	3	2	C2H2-type	zinc	finger
zf-C2H2_6	PF13912.1	gi|379005512|ref|YP_005261184.1|	-	0.00024	20.8	9.0	0.00041	20.1	0.1	3.2	3	0	0	3	3	3	1	C2H2-type	zinc	finger
DUF329	PF03884.9	gi|379005512|ref|YP_005261184.1|	-	0.0014	18.1	4.5	0.76	9.3	0.4	3.0	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF329)
C1_3	PF07649.7	gi|379005512|ref|YP_005261184.1|	-	0.0054	16.7	5.7	9.9	6.3	0.0	4.1	4	0	0	4	4	4	0	C1-like	domain
DUF2318	PF10080.4	gi|379005512|ref|YP_005261184.1|	-	0.0059	16.3	7.9	0.067	12.9	0.6	2.8	1	1	2	3	3	3	1	Predicted	membrane	protein	(DUF2318)
PRP21_like_P	PF12230.3	gi|379005512|ref|YP_005261184.1|	-	0.016	14.7	1.9	0.029	13.8	0.2	2.1	1	1	2	3	3	3	0	Pre-mRNA	splicing	factor	PRP21	like	protein
zf-H2C2_2	PF13465.1	gi|379005512|ref|YP_005261184.1|	-	0.016	15.5	9.8	0.25	11.7	0.1	3.9	4	0	0	4	4	3	0	Zinc-finger	double	domain
zf-CHY	PF05495.7	gi|379005512|ref|YP_005261184.1|	-	0.022	14.9	7.4	0.13	12.4	3.4	2.4	1	1	1	2	2	2	0	CHY	zinc	finger
Sgf11	PF08209.6	gi|379005512|ref|YP_005261184.1|	-	0.022	14.0	4.8	4.8	6.5	0.0	3.2	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
DZR	PF12773.2	gi|379005512|ref|YP_005261184.1|	-	0.024	14.4	7.1	0.13	12.1	3.3	2.4	1	1	1	2	2	2	0	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|379005512|ref|YP_005261184.1|	-	0.04	13.5	9.8	1.2	8.8	5.2	3.0	2	1	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
ArgJ	PF01960.13	gi|379005512|ref|YP_005261184.1|	-	0.071	11.5	0.0	0.082	11.2	0.0	1.1	1	0	0	1	1	1	0	ArgJ	family
zf-C2HC_2	PF13913.1	gi|379005512|ref|YP_005261184.1|	-	0.084	12.5	12.1	0.16	11.6	0.0	4.0	3	1	1	4	4	4	0	zinc-finger	of	a	C2HC-type
FAM176	PF14851.1	gi|379005512|ref|YP_005261184.1|	-	0.086	12.5	0.0	0.12	12.0	0.0	1.4	1	0	0	1	1	1	0	FAM176	family
DUF1644	PF07800.7	gi|379005512|ref|YP_005261184.1|	-	0.091	12.6	3.9	0.19	11.5	2.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1644)
GAGA	PF09237.6	gi|379005512|ref|YP_005261184.1|	-	0.094	12.3	0.1	0.094	12.3	0.1	2.2	3	0	0	3	3	2	0	GAGA	factor
DUF2256	PF10013.4	gi|379005512|ref|YP_005261184.1|	-	0.1	12.3	0.2	0.1	12.3	0.2	3.3	4	0	0	4	4	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
DUF2321	PF10083.4	gi|379005512|ref|YP_005261184.1|	-	0.1	12.0	2.4	0.16	11.4	1.6	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2321)
Zn-ribbon_8	PF09723.5	gi|379005512|ref|YP_005261184.1|	-	0.13	12.2	4.5	8.6	6.4	0.0	3.4	3	1	0	3	3	3	0	Zinc	ribbon	domain
zf-C2H2_2	PF12756.2	gi|379005512|ref|YP_005261184.1|	-	0.13	12.4	9.7	3.9	7.6	0.6	3.3	2	1	1	3	3	3	0	C2H2	type	zinc-finger	(2	copies)
zf-RING_5	PF14634.1	gi|379005512|ref|YP_005261184.1|	-	0.13	12.0	6.5	4.5	7.0	0.0	3.1	3	0	0	3	3	3	0	zinc-RING	finger	domain
DUF3268	PF11672.3	gi|379005512|ref|YP_005261184.1|	-	0.18	11.9	5.9	0.061	13.3	2.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3268)
zf-FCS	PF06467.9	gi|379005512|ref|YP_005261184.1|	-	0.25	11.0	8.2	0.84	9.3	0.5	2.9	2	1	1	3	3	3	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
DUF2039	PF10217.4	gi|379005512|ref|YP_005261184.1|	-	0.25	11.3	9.1	0.15	12.1	4.8	1.7	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2039)
zinc-ribbons_6	PF07191.7	gi|379005512|ref|YP_005261184.1|	-	0.25	11.1	5.3	0.44	10.3	1.8	2.6	1	1	0	1	1	1	0	zinc-ribbons
zf-Sec23_Sec24	PF04810.10	gi|379005512|ref|YP_005261184.1|	-	0.28	10.7	4.3	6.7	6.3	0.4	3.2	3	1	0	3	3	3	0	Sec23/Sec24	zinc	finger
Prok-RING_4	PF14447.1	gi|379005512|ref|YP_005261184.1|	-	0.33	10.5	0.1	0.33	10.5	0.0	2.5	3	0	0	3	3	3	0	Prokaryotic	RING	finger	family	4
DUF2175	PF09943.4	gi|379005512|ref|YP_005261184.1|	-	0.35	10.9	4.3	0.8	9.7	0.1	2.7	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
zf-met	PF12874.2	gi|379005512|ref|YP_005261184.1|	-	0.41	10.9	12.4	6.8	7.0	0.1	4.3	3	1	0	3	3	3	0	Zinc-finger	of	C2H2	type
Yippee-Mis18	PF03226.9	gi|379005512|ref|YP_005261184.1|	-	0.56	10.2	4.8	3.7	7.6	2.6	2.0	1	1	1	2	2	2	0	Yippee	zinc-binding/DNA-binding	/Mis18,	centromere	assembly
Mut7-C	PF01927.11	gi|379005512|ref|YP_005261184.1|	-	0.56	10.1	3.3	0.87	9.5	1.7	1.7	1	1	0	1	1	1	0	Mut7-C	RNAse	domain
HypA	PF01155.14	gi|379005512|ref|YP_005261184.1|	-	0.6	9.8	4.3	5.7	6.6	3.0	2.1	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DUF4428	PF14471.1	gi|379005512|ref|YP_005261184.1|	-	0.62	9.8	6.6	4.1	7.2	0.0	3.3	4	0	0	4	4	3	0	Domain	of	unknown	function	(DUF4428)
zf-ribbon_3	PF13248.1	gi|379005512|ref|YP_005261184.1|	-	0.64	9.3	4.3	6.5	6.1	0.1	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
FYVE_2	PF02318.11	gi|379005512|ref|YP_005261184.1|	-	1.2	9.0	5.8	0.98	9.3	2.5	1.8	1	1	1	2	2	2	0	FYVE-type	zinc	finger
Cys_rich_KTR	PF14205.1	gi|379005512|ref|YP_005261184.1|	-	1.3	8.5	0.1	1.3	8.5	0.0	2.8	3	1	0	3	3	3	0	Cysteine-rich	KTR
DUF3505	PF12013.3	gi|379005512|ref|YP_005261184.1|	-	1.3	9.2	11.2	0.48	10.6	0.6	2.9	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3505)
zf-TRAF	PF02176.13	gi|379005512|ref|YP_005261184.1|	-	1.5	9.2	5.4	5.4	7.4	2.3	2.5	2	1	1	3	3	2	0	TRAF-type	zinc	finger
Endonuclease_7	PF02945.10	gi|379005512|ref|YP_005261184.1|	-	1.6	8.5	7.8	0.9	9.2	3.5	2.0	1	1	1	2	2	2	0	Recombination	endonuclease	VII
zf-C2H2_jaz	PF12171.3	gi|379005512|ref|YP_005261184.1|	-	1.7	8.8	0.0	1.7	8.8	0.0	4.0	4	1	0	4	4	3	0	Zinc-finger	double-stranded	RNA-binding
zf-met2	PF12907.2	gi|379005512|ref|YP_005261184.1|	-	1.9	8.5	9.1	30	4.6	0.1	3.5	3	0	0	3	3	3	0	Zinc-binding
DUF1677	PF07911.8	gi|379005512|ref|YP_005261184.1|	-	2	8.6	6.6	0.93	9.7	1.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1677)
DNA_RNApol_7kD	PF03604.8	gi|379005512|ref|YP_005261184.1|	-	2.1	7.9	7.6	5.7	6.5	0.0	3.1	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
C1_2	PF03107.11	gi|379005512|ref|YP_005261184.1|	-	2.3	8.3	10.2	3.1	8.0	0.1	3.2	4	0	0	4	4	2	0	C1	domain
Rubredoxin	PF00301.15	gi|379005512|ref|YP_005261184.1|	-	2.8	7.9	5.6	5.9	6.8	0.1	3.0	3	0	0	3	3	3	0	Rubredoxin
zf-HIT	PF04438.11	gi|379005512|ref|YP_005261184.1|	-	4.8	6.9	10.0	32	4.2	0.1	3.9	4	0	0	4	4	4	0	HIT	zinc	finger
FYDLN_acid	PF09538.5	gi|379005512|ref|YP_005261184.1|	-	4.9	7.7	7.6	11	6.6	0.8	2.3	2	1	1	3	3	2	0	Protein	of	unknown	function	(FYDLN_acid)
DUF2225	PF09986.4	gi|379005512|ref|YP_005261184.1|	-	5.1	6.5	7.7	0.78	9.1	0.4	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
Zn_Tnp_IS1595	PF12760.2	gi|379005512|ref|YP_005261184.1|	-	5.7	6.8	9.6	2.1	8.2	1.9	2.6	2	1	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-C3HC4	PF00097.20	gi|379005512|ref|YP_005261184.1|	-	5.7	6.6	7.5	10	5.8	0.0	3.1	3	1	0	3	3	3	0	Zinc	finger,	C3HC4	type	(RING	finger)
BIR	PF00653.16	gi|379005512|ref|YP_005261184.1|	-	7.2	7.1	12.1	6	7.3	1.6	2.8	1	1	2	3	3	2	0	Inhibitor	of	Apoptosis	domain
RNHCP	PF12647.2	gi|379005512|ref|YP_005261184.1|	-	8	6.3	7.0	9.3	6.1	0.4	2.6	2	1	1	3	3	2	0	RNHCP	domain
zf-AN1	PF01428.11	gi|379005512|ref|YP_005261184.1|	-	8.9	6.2	9.5	17	5.3	1.3	3.1	3	0	0	3	3	3	0	AN1-like	Zinc	finger
PHD	PF00628.24	gi|379005512|ref|YP_005261184.1|	-	9.8	5.9	8.1	9.6	5.9	0.5	2.8	2	1	1	3	3	3	0	PHD-finger
Radical_SAM	PF04055.16	gi|379005514|ref|YP_005261186.1|	-	3.1e-15	56.7	0.2	5.7e-14	52.6	0.0	2.8	3	0	0	3	3	3	1	Radical	SAM	superfamily
Flavin_Reduct	PF01613.13	gi|379005516|ref|YP_005261188.1|	-	2.9e-28	98.6	0.0	3.5e-28	98.3	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Rad51	PF08423.6	gi|379005517|ref|YP_005261189.1|	-	6.6e-98	326.7	0.0	8.3e-98	326.3	0.0	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.16	gi|379005517|ref|YP_005261189.1|	-	1.7e-14	53.6	0.1	2.5e-14	53.1	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.1	gi|379005517|ref|YP_005261189.1|	-	5.6e-14	52.0	0.1	9.3e-14	51.2	0.1	1.3	1	0	0	1	1	1	1	AAA	domain
KaiC	PF06745.8	gi|379005517|ref|YP_005261189.1|	-	1.4e-12	47.2	0.0	2.8e-12	46.2	0.0	1.5	1	1	0	1	1	1	1	KaiC
HHH_5	PF14520.1	gi|379005517|ref|YP_005261189.1|	-	7e-10	38.9	1.2	7.9e-09	35.5	0.6	2.4	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
AAA_22	PF13401.1	gi|379005517|ref|YP_005261189.1|	-	0.0001	22.4	0.0	0.00019	21.5	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
HhH-GPD	PF00730.20	gi|379005517|ref|YP_005261189.1|	-	0.0098	16.1	0.0	0.026	14.8	0.0	1.7	1	1	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
AAA_18	PF13238.1	gi|379005517|ref|YP_005261189.1|	-	0.01	16.1	0.0	0.049	13.9	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
BAF	PF02961.9	gi|379005517|ref|YP_005261189.1|	-	0.032	14.5	0.0	0.073	13.3	0.0	1.5	1	0	0	1	1	1	0	Barrier	to	autointegration	factor
SRP54	PF00448.17	gi|379005517|ref|YP_005261189.1|	-	0.041	13.3	0.0	0.074	12.4	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
PAXNEB	PF05625.6	gi|379005517|ref|YP_005261189.1|	-	0.046	12.5	0.1	0.16	10.7	0.0	1.7	2	0	0	2	2	2	0	PAXNEB	protein
ATP_bind_1	PF03029.12	gi|379005517|ref|YP_005261189.1|	-	0.047	13.2	0.0	0.14	11.6	0.0	1.8	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
IMS_HHH	PF11798.3	gi|379005517|ref|YP_005261189.1|	-	0.11	12.5	0.1	0.28	11.3	0.1	1.7	1	0	0	1	1	1	0	IMS	family	HHH	motif
Met_10	PF02475.11	gi|379005518|ref|YP_005261190.1|	-	2e-54	184.2	0.0	2.4e-54	183.9	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_18	PF12847.2	gi|379005518|ref|YP_005261190.1|	-	0.00049	20.6	0.0	0.0012	19.4	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|379005518|ref|YP_005261190.1|	-	0.0018	17.6	0.0	0.0032	16.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
PrmA	PF06325.8	gi|379005518|ref|YP_005261190.1|	-	0.019	14.1	0.0	0.025	13.6	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
DUF2153	PF09921.4	gi|379005519|ref|YP_005261191.1|	-	6.7e-52	174.3	0.2	8.1e-52	174.1	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
CorA	PF01544.13	gi|379005519|ref|YP_005261191.1|	-	0.0028	16.7	0.5	0.0034	16.4	0.3	1.1	1	0	0	1	1	1	1	CorA-like	Mg2+	transporter	protein
BLOC1_2	PF10046.4	gi|379005519|ref|YP_005261191.1|	-	0.043	13.9	1.0	0.081	13.0	0.3	1.7	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
SNARE	PF05739.14	gi|379005519|ref|YP_005261191.1|	-	0.075	12.7	1.9	0.24	11.0	0.2	2.1	2	0	0	2	2	2	0	SNARE	domain
DUF4635	PF15466.1	gi|379005519|ref|YP_005261191.1|	-	0.077	12.2	2.8	0.12	11.7	0.5	2.1	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4635)
SlyX	PF04102.7	gi|379005519|ref|YP_005261191.1|	-	0.091	13.1	2.0	0.1	12.9	0.5	1.8	2	0	0	2	2	2	0	SlyX
DUF2070	PF09843.4	gi|379005520|ref|YP_005261192.1|	-	3e-51	173.4	0.1	4.5e-51	172.8	0.0	1.3	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Haem_oxygenas_2	PF14518.1	gi|379005521|ref|YP_005261193.1|	-	0.054	13.6	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	Iron-containing	redox	enzyme
UDG	PF03167.14	gi|379005523|ref|YP_005261195.1|	-	1.7e-39	134.7	0.0	1.9e-39	134.5	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
IFT57	PF10498.4	gi|379005524|ref|YP_005261196.1|	-	0.022	13.4	4.0	0.026	13.2	2.8	1.2	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
HrpB7	PF09486.5	gi|379005524|ref|YP_005261196.1|	-	0.03	14.2	3.5	4.3	7.2	1.2	2.3	2	0	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB7)
TrbI_Ftype	PF09677.5	gi|379005524|ref|YP_005261196.1|	-	0.077	12.8	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Type-F	conjugative	transfer	system	protein	(TrbI_Ftype)
IncA	PF04156.9	gi|379005524|ref|YP_005261196.1|	-	0.1	12.1	10.5	0.17	11.4	7.3	1.3	1	0	0	1	1	1	0	IncA	protein
Atg14	PF10186.4	gi|379005524|ref|YP_005261196.1|	-	0.12	11.3	8.1	0.16	10.9	5.6	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
BLOC1_2	PF10046.4	gi|379005524|ref|YP_005261196.1|	-	0.18	11.9	5.3	11	6.2	0.0	2.9	2	1	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
APG6	PF04111.7	gi|379005524|ref|YP_005261196.1|	-	0.34	9.9	6.7	0.51	9.3	4.6	1.3	1	0	0	1	1	1	0	Autophagy	protein	Apg6
DUF1664	PF07889.7	gi|379005524|ref|YP_005261196.1|	-	0.35	10.6	3.6	0.41	10.4	0.8	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1664)
Bacillus_HBL	PF05791.6	gi|379005524|ref|YP_005261196.1|	-	0.39	10.0	3.4	1.3	8.4	1.8	1.9	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
DUF972	PF06156.8	gi|379005524|ref|YP_005261196.1|	-	0.64	10.3	6.1	1.4	9.2	2.9	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
DNA_repr_REX1B	PF14966.1	gi|379005524|ref|YP_005261196.1|	-	0.95	9.8	4.8	2.8	8.3	3.3	1.9	1	1	0	1	1	1	0	DNA	repair	REX1-B
Lebercilin	PF15619.1	gi|379005524|ref|YP_005261196.1|	-	2.1	7.6	16.3	0.99	8.7	8.9	1.8	1	1	0	1	1	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
DUF4200	PF13863.1	gi|379005524|ref|YP_005261196.1|	-	2.9	7.8	13.1	1.4	8.8	5.2	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
DUF16	PF01519.11	gi|379005524|ref|YP_005261196.1|	-	4.6	7.5	7.7	15	5.8	5.2	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	DUF16
zf-trcl	PF13451.1	gi|379005526|ref|YP_005261198.1|	-	0.07	12.7	3.3	1.1	9.0	0.2	2.3	2	0	0	2	2	2	0	Probable	zinc-binding	domain
Lar_restr_allev	PF14354.1	gi|379005526|ref|YP_005261198.1|	-	0.099	12.9	0.9	0.12	12.7	0.6	1.2	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DUF3797	PF12677.2	gi|379005526|ref|YP_005261198.1|	-	0.11	12.0	3.5	5.6	6.6	0.6	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
A2L_zn_ribbon	PF08792.5	gi|379005526|ref|YP_005261198.1|	-	0.12	11.8	0.5	3.7	7.1	0.0	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Cys_rich_KTR	PF14205.1	gi|379005526|ref|YP_005261198.1|	-	1.4	8.4	5.9	8.5	5.9	4.1	2.0	1	1	0	1	1	1	0	Cysteine-rich	KTR
RimK	PF08443.6	gi|379005527|ref|YP_005261199.1|	-	2.9e-41	141.0	0.0	3.7e-41	140.7	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|379005527|ref|YP_005261199.1|	-	4.3e-17	61.7	0.0	6.5e-17	61.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379005527|ref|YP_005261199.1|	-	3.2e-13	49.8	0.0	4.6e-13	49.3	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|379005527|ref|YP_005261199.1|	-	8.6e-10	38.7	0.0	1.3e-09	38.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|379005527|ref|YP_005261199.1|	-	1.5e-05	23.9	0.0	3.5e-05	22.7	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
TTL	PF03133.10	gi|379005527|ref|YP_005261199.1|	-	0.0047	15.8	0.0	0.012	14.5	0.0	1.6	2	0	0	2	2	2	1	Tubulin-tyrosine	ligase	family
ABC2_membrane_5	PF13346.1	gi|379005529|ref|YP_005261201.1|	-	0.33	10.2	14.2	6.9	5.9	9.8	2.2	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
Orbi_NS3	PF01616.11	gi|379005529|ref|YP_005261201.1|	-	0.37	9.7	1.9	0.21	10.5	0.0	1.5	2	0	0	2	2	2	0	Orbivirus	NS3
zf-NADH-PPase	PF09297.6	gi|379005530|ref|YP_005261202.1|	-	0.00099	18.5	0.6	0.18	11.3	0.1	2.2	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
zf-CSL	PF05207.8	gi|379005530|ref|YP_005261202.1|	-	0.0011	18.3	0.4	0.0014	18.1	0.2	1.1	1	0	0	1	1	1	1	CSL	zinc	finger
DZR	PF12773.2	gi|379005530|ref|YP_005261202.1|	-	0.0015	18.2	0.6	0.0023	17.6	0.4	1.4	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc-ribbons_6	PF07191.7	gi|379005530|ref|YP_005261202.1|	-	0.0029	17.3	2.0	0.035	13.8	0.4	1.6	1	1	1	2	2	2	2	zinc-ribbons
zinc_ribbon_2	PF13240.1	gi|379005530|ref|YP_005261202.1|	-	0.0035	16.7	0.5	0.099	12.1	0.1	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|379005530|ref|YP_005261202.1|	-	0.0053	15.9	1.1	0.063	12.5	0.1	2.0	2	0	0	2	2	2	1	zinc-ribbon	domain
HypA	PF01155.14	gi|379005530|ref|YP_005261202.1|	-	0.019	14.6	0.2	0.022	14.4	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Nudix_N_2	PF14803.1	gi|379005530|ref|YP_005261202.1|	-	0.036	13.7	0.8	0.64	9.7	0.1	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
zf-TFIIB	PF13453.1	gi|379005530|ref|YP_005261202.1|	-	0.056	12.6	3.6	0.11	11.6	2.5	1.5	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
zf-ISL3	PF14690.1	gi|379005530|ref|YP_005261202.1|	-	0.074	13.0	0.9	0.36	10.9	0.0	2.1	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_5	PF13719.1	gi|379005530|ref|YP_005261202.1|	-	0.08	12.5	0.6	1.2	8.8	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
RecR	PF02132.10	gi|379005530|ref|YP_005261202.1|	-	0.084	12.3	0.7	5.4	6.5	0.1	2.1	2	0	0	2	2	2	0	RecR	protein
Terminase_GpA	PF05876.7	gi|379005530|ref|YP_005261202.1|	-	0.096	11.0	0.3	0.099	10.9	0.2	1.0	1	0	0	1	1	1	0	Phage	terminase	large	subunit	(GpA)
DUF1610	PF07754.6	gi|379005530|ref|YP_005261202.1|	-	0.11	12.6	3.9	4.7	7.4	0.1	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zinc_ribbon_4	PF13717.1	gi|379005530|ref|YP_005261202.1|	-	0.12	12.1	0.7	1.7	8.4	0.0	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
IBR	PF01485.16	gi|379005530|ref|YP_005261202.1|	-	0.13	12.1	1.2	0.18	11.6	0.8	1.3	1	1	0	1	1	1	0	IBR	domain
zf-C2H2_jaz	PF12171.3	gi|379005530|ref|YP_005261202.1|	-	0.14	12.3	1.7	8.8	6.6	0.0	2.3	2	0	0	2	2	2	0	Zinc-finger	double-stranded	RNA-binding
DUF164	PF02591.10	gi|379005530|ref|YP_005261202.1|	-	0.14	11.9	4.4	4	7.3	0.5	2.2	1	1	1	2	2	2	0	Putative	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|379005530|ref|YP_005261202.1|	-	0.16	11.6	2.1	0.64	9.7	1.4	1.9	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_ribbon_recom	PF13408.1	gi|379005530|ref|YP_005261202.1|	-	1.2	9.4	5.2	2.9	8.2	3.6	1.7	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
zf-tcix	PF14952.1	gi|379005530|ref|YP_005261202.1|	-	1.7	8.0	4.1	11	5.5	0.2	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
MarR_2	PF12802.2	gi|379005532|ref|YP_005261204.1|	-	1.2e-10	40.8	0.1	2.7e-10	39.7	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_IclR	PF09339.5	gi|379005532|ref|YP_005261204.1|	-	2.6e-10	39.7	0.1	5.6e-10	38.6	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.1	gi|379005532|ref|YP_005261204.1|	-	2e-08	33.4	0.0	6.7e-08	31.8	0.0	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|379005532|ref|YP_005261204.1|	-	4.4e-08	32.7	0.2	6.7e-08	32.1	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|379005532|ref|YP_005261204.1|	-	6e-08	32.3	0.2	1.3e-07	31.2	0.1	1.6	1	1	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|379005532|ref|YP_005261204.1|	-	1.9e-06	27.6	0.0	2.9e-06	27.1	0.0	1.3	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.15	gi|379005532|ref|YP_005261204.1|	-	3e-06	26.7	0.0	6.6e-06	25.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|379005532|ref|YP_005261204.1|	-	5.3e-06	26.0	0.1	2.1e-05	24.0	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|379005532|ref|YP_005261204.1|	-	6.1e-05	23.2	0.0	0.0001	22.5	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_23	PF13384.1	gi|379005532|ref|YP_005261204.1|	-	6.9e-05	22.3	0.0	0.00015	21.2	0.0	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
GntR	PF00392.16	gi|379005532|ref|YP_005261204.1|	-	8.8e-05	21.8	0.3	0.00022	20.5	0.2	1.8	1	1	1	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_AsnC-type	PF13404.1	gi|379005532|ref|YP_005261204.1|	-	0.00012	21.5	0.3	0.00032	20.1	0.1	1.9	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Penicillinase_R	PF03965.11	gi|379005532|ref|YP_005261204.1|	-	0.00033	20.7	0.1	0.00051	20.1	0.1	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_38	PF13936.1	gi|379005532|ref|YP_005261204.1|	-	0.00047	19.6	0.0	0.0009	18.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379005532|ref|YP_005261204.1|	-	0.00068	19.7	0.2	0.0016	18.5	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn	helix
HTH_28	PF13518.1	gi|379005532|ref|YP_005261204.1|	-	0.00075	19.4	0.2	0.0031	17.4	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|379005532|ref|YP_005261204.1|	-	0.0017	17.9	0.1	0.0033	17.0	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
TFIIE_alpha	PF02002.12	gi|379005532|ref|YP_005261204.1|	-	0.0035	16.8	0.1	0.0063	16.0	0.0	1.5	1	1	1	2	2	2	1	TFIIE	alpha	subunit
HTH_41	PF14502.1	gi|379005532|ref|YP_005261204.1|	-	0.0054	16.3	0.0	0.0098	15.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
CM_2	PF01817.16	gi|379005532|ref|YP_005261204.1|	-	0.0057	16.7	0.3	0.012	15.6	0.0	1.7	2	0	0	2	2	1	1	Chorismate	mutase	type	II
Rrf2	PF02082.15	gi|379005532|ref|YP_005261204.1|	-	0.0077	16.3	0.1	0.012	15.7	0.1	1.3	1	0	0	1	1	1	1	Transcriptional	regulator
RPA_C	PF08784.6	gi|379005532|ref|YP_005261204.1|	-	0.011	16.1	0.0	0.014	15.7	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
DUF2250	PF10007.4	gi|379005532|ref|YP_005261204.1|	-	0.012	15.5	0.0	0.018	14.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF742	PF05331.6	gi|379005532|ref|YP_005261204.1|	-	0.013	15.0	0.1	0.016	14.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_CodY	PF08222.6	gi|379005532|ref|YP_005261204.1|	-	0.022	14.0	0.0	0.039	13.2	0.0	1.4	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|379005532|ref|YP_005261204.1|	-	0.039	13.5	0.1	0.067	12.7	0.0	1.5	1	1	0	1	1	1	0	LexA	DNA	binding	domain
DUF3253	PF11625.3	gi|379005532|ref|YP_005261204.1|	-	0.055	13.3	0.3	0.59	10.0	0.2	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3253)
PaaX	PF07848.7	gi|379005532|ref|YP_005261204.1|	-	0.055	13.4	0.2	0.11	12.4	0.1	1.7	2	0	0	2	2	1	0	PaaX-like	protein
HTH_36	PF13730.1	gi|379005532|ref|YP_005261204.1|	-	0.06	13.4	0.0	0.1	12.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
EAP30	PF04157.11	gi|379005532|ref|YP_005261204.1|	-	0.11	11.6	0.0	0.13	11.4	0.0	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
ASCH	PF04266.9	gi|379005534|ref|YP_005261206.1|	-	1e-10	41.9	0.0	1.2e-10	41.6	0.0	1.1	1	0	0	1	1	1	1	ASCH	domain
DUF1021	PF06257.6	gi|379005534|ref|YP_005261206.1|	-	0.1	12.3	0.2	0.21	11.2	0.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1021)
Peptidase_M24	PF00557.19	gi|379005535|ref|YP_005261207.1|	-	9.2e-57	191.9	0.8	1.2e-56	191.6	0.5	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|379005535|ref|YP_005261207.1|	-	8e-05	23.1	0.0	0.00018	21.9	0.0	1.7	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
HAS-barrel	PF09378.5	gi|379005535|ref|YP_005261207.1|	-	0.36	10.7	3.3	7.4	6.5	0.2	3.0	4	0	0	4	4	4	0	HAS	barrel	domain
Methyltransf_26	PF13659.1	gi|379005536|ref|YP_005261208.1|	-	9.8e-14	51.3	0.0	2.2e-13	50.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Spermine_synth	PF01564.12	gi|379005536|ref|YP_005261208.1|	-	2.3e-06	26.7	0.0	3.1e-06	26.3	0.0	1.2	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Cons_hypoth95	PF03602.10	gi|379005536|ref|YP_005261208.1|	-	6.7e-06	25.6	0.0	9.7e-06	25.0	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_18	PF12847.2	gi|379005536|ref|YP_005261208.1|	-	2e-05	25.1	0.0	3.9e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379005536|ref|YP_005261208.1|	-	0.0003	20.2	0.0	0.00041	19.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_11	PF08241.7	gi|379005536|ref|YP_005261208.1|	-	0.0015	18.9	0.0	0.0035	17.8	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379005536|ref|YP_005261208.1|	-	0.0056	17.0	0.0	0.011	16.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|379005536|ref|YP_005261208.1|	-	0.083	12.4	0.0	0.11	12.0	0.0	1.2	1	0	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
Methyltransf_30	PF05430.6	gi|379005536|ref|YP_005261208.1|	-	0.13	11.9	0.0	0.38	10.4	0.0	1.8	1	1	0	1	1	1	0	S-adenosyl-L-methionine-dependent	methyltransferase
HD	PF01966.17	gi|379005538|ref|YP_005261210.1|	-	1.3e-11	44.6	0.2	3e-11	43.3	0.1	1.7	1	0	0	1	1	1	1	HD	domain
HDOD	PF08668.7	gi|379005538|ref|YP_005261210.1|	-	0.038	13.2	0.0	0.061	12.5	0.0	1.2	1	0	0	1	1	1	0	HDOD	domain
Pyr_redox_2	PF07992.9	gi|379005539|ref|YP_005261211.1|	-	0.00018	21.4	0.0	0.00032	20.6	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|379005539|ref|YP_005261211.1|	-	0.0015	17.5	0.2	0.52	9.1	0.0	2.2	2	0	0	2	2	2	2	Lycopene	cyclase	protein
NAD_binding_8	PF13450.1	gi|379005539|ref|YP_005261211.1|	-	0.024	14.6	0.0	0.1	12.6	0.0	2.2	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379005539|ref|YP_005261211.1|	-	0.029	14.4	0.1	0.067	13.2	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|379005539|ref|YP_005261211.1|	-	0.043	12.8	0.7	0.52	9.2	0.1	2.1	2	0	0	2	2	2	0	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|379005539|ref|YP_005261211.1|	-	0.11	12.2	0.1	9.8	5.9	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
tRNA-synt_1b	PF00579.20	gi|379005540|ref|YP_005261212.1|	-	3.8e-42	144.4	0.0	6.2e-42	143.7	0.0	1.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
DUF371	PF04027.8	gi|379005541|ref|YP_005261213.1|	-	5.1e-33	113.5	0.0	6e-33	113.3	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Pilus_CpaD	PF09476.5	gi|379005541|ref|YP_005261213.1|	-	0.05	13.0	0.0	0.16	11.4	0.0	1.7	1	1	1	2	2	2	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
CTP_transf_1	PF01148.15	gi|379005542|ref|YP_005261214.1|	-	0.11	12.1	6.0	0.31	10.6	4.1	1.8	1	1	1	2	2	2	0	Cytidylyltransferase	family
MMgT	PF10270.4	gi|379005542|ref|YP_005261214.1|	-	0.12	12.7	0.0	0.22	11.9	0.0	1.5	1	0	0	1	1	1	0	Membrane	magnesium	transporter
7TM-7TMR_HD	PF07698.6	gi|379005542|ref|YP_005261214.1|	-	0.67	9.3	9.3	5.7	6.3	3.1	2.4	2	1	0	2	2	2	0	7TM	receptor	with	intracellular	HD	hydrolase
UPF0278	PF08745.6	gi|379005543|ref|YP_005261215.1|	-	3.6e-05	23.1	1.3	5.3e-05	22.5	0.9	1.3	1	1	0	1	1	1	1	UPF0278	family
PIN	PF01850.16	gi|379005543|ref|YP_005261215.1|	-	0.00013	22.2	2.6	0.0007	19.9	1.8	1.9	1	1	0	1	1	1	1	PIN	domain
DUF4411	PF14367.1	gi|379005543|ref|YP_005261215.1|	-	0.0011	18.7	0.0	0.02	14.6	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4411)
NAD_kinase	PF01513.16	gi|379005544|ref|YP_005261216.1|	-	2.4e-21	75.7	0.0	3.2e-21	75.3	0.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|379005544|ref|YP_005261216.1|	-	0.016	14.5	0.0	0.029	13.7	0.0	1.5	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
AFOR_C	PF01314.13	gi|379005545|ref|YP_005261217.1|	-	5.3e-124	413.7	0.1	6.4e-124	413.4	0.0	1.1	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.10	gi|379005545|ref|YP_005261217.1|	-	1.3e-71	240.0	0.1	2.1e-71	239.4	0.1	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
DUF2298	PF10060.4	gi|379005546|ref|YP_005261218.1|	-	0.003	16.4	8.1	0.0031	16.4	5.6	1.0	1	0	0	1	1	1	1	Uncharacterized	membrane	protein	(DUF2298)
DUF3923	PF13061.1	gi|379005546|ref|YP_005261218.1|	-	0.057	13.2	0.5	0.057	13.2	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3923)
Oxidored_q2	PF00420.19	gi|379005547|ref|YP_005261219.1|	-	0.056	13.0	10.5	0.081	12.5	7.3	1.3	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
PRA1	PF03208.14	gi|379005547|ref|YP_005261219.1|	-	4.1	6.7	7.3	4.5	6.5	5.0	1.0	1	0	0	1	1	1	0	PRA1	family	protein
Oxidored_q6	PF01058.17	gi|379005550|ref|YP_005261222.1|	-	2.3e-23	82.2	0.2	2.7e-23	81.9	0.1	1.0	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Complex1_49kDa	PF00346.14	gi|379005551|ref|YP_005261223.1|	-	2e-45	154.9	0.0	2.5e-45	154.6	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Radical_SAM	PF04055.16	gi|379005553|ref|YP_005261225.1|	-	7.5e-24	84.7	0.0	1.1e-23	84.2	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Amidohydro_4	PF13147.1	gi|379005553|ref|YP_005261225.1|	-	0.011	15.7	0.2	0.022	14.7	0.1	1.4	1	0	0	1	1	1	0	Amidohydrolase
Chlorovi_GP_rpt	PF06598.6	gi|379005554|ref|YP_005261226.1|	-	0.073	12.9	0.0	0.075	12.8	0.0	1.1	1	0	0	1	1	1	0	Chlorovirus	glycoprotein	repeat
ILVD_EDD	PF00920.16	gi|379005555|ref|YP_005261227.1|	-	1.1e-203	677.3	0.0	1.3e-203	677.2	0.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
DUF488	PF04343.8	gi|379005556|ref|YP_005261228.1|	-	3.5e-26	91.9	0.0	4.4e-26	91.6	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
TPP_enzyme_N	PF02776.13	gi|379005557|ref|YP_005261229.1|	-	3.4e-53	179.6	0.1	2.9e-51	173.3	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|379005557|ref|YP_005261229.1|	-	9.7e-35	119.4	0.3	7e-34	116.6	0.0	2.2	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|379005557|ref|YP_005261229.1|	-	1.6e-32	112.1	0.0	3.3e-32	111.0	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CO_dh	PF02552.11	gi|379005557|ref|YP_005261229.1|	-	0.023	14.2	0.0	0.04	13.4	0.0	1.3	1	0	0	1	1	1	0	CO	dehydrogenase	beta	subunit/acetyl-CoA	synthase	epsilon	subunit
DXP_synthase_N	PF13292.1	gi|379005557|ref|YP_005261229.1|	-	0.097	11.5	0.0	0.15	10.9	0.0	1.2	1	0	0	1	1	1	0	1-deoxy-D-xylulose-5-phosphate	synthase
XFP_N	PF09364.5	gi|379005557|ref|YP_005261229.1|	-	0.13	10.8	0.0	0.2	10.1	0.0	1.2	1	0	0	1	1	1	0	XFP	N-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|379005558|ref|YP_005261230.1|	-	4e-61	205.2	0.0	5.5e-61	204.8	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|379005558|ref|YP_005261230.1|	-	8.4e-30	102.9	0.1	9.4e-30	102.8	0.1	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|379005558|ref|YP_005261230.1|	-	2.2e-05	24.3	0.0	4.4e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|379005558|ref|YP_005261230.1|	-	0.024	14.2	0.2	0.29	10.7	0.0	2.7	3	0	0	3	3	3	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379005558|ref|YP_005261230.1|	-	0.028	14.8	0.2	0.57	10.6	0.0	2.8	3	0	0	3	3	3	0	NADP	oxidoreductase	coenzyme	F420-dependent
AdoHcyase_NAD	PF00670.16	gi|379005558|ref|YP_005261230.1|	-	0.04	13.7	0.0	0.15	11.9	0.0	1.9	1	1	1	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
CHASE2	PF05226.6	gi|379005558|ref|YP_005261230.1|	-	0.045	12.9	0.0	0.88	8.7	0.0	2.5	1	1	0	1	1	1	0	CHASE2	domain
TrkA_N	PF02254.13	gi|379005558|ref|YP_005261230.1|	-	0.14	12.2	0.8	2.3	8.2	0.0	2.9	3	0	0	3	3	3	0	TrkA-N	domain
DUF1297	PF06973.7	gi|379005559|ref|YP_005261231.1|	-	3.1e-57	192.9	0.0	5.4e-57	192.1	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|379005559|ref|YP_005261231.1|	-	6e-41	139.0	0.0	9.4e-41	138.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_4	PF13535.1	gi|379005559|ref|YP_005261231.1|	-	1.7e-05	24.6	0.1	4.5e-05	23.2	0.0	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|379005559|ref|YP_005261231.1|	-	0.00058	19.7	0.0	0.0013	18.6	0.0	1.6	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-cone	PF03477.11	gi|379005560|ref|YP_005261232.1|	-	8.2e-09	35.7	1.4	1e-08	35.5	0.7	1.4	1	1	1	2	2	2	1	ATP	cone	domain
DUF4343	PF14243.1	gi|379005560|ref|YP_005261232.1|	-	0.028	14.2	0.1	0.033	14.0	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4343)
PHB_acc_N	PF07879.6	gi|379005560|ref|YP_005261232.1|	-	0.097	12.4	0.2	0.18	11.5	0.1	1.4	1	0	0	1	1	1	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
MHCassoc_trimer	PF08831.5	gi|379005560|ref|YP_005261232.1|	-	0.12	12.2	0.1	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	Class	II	MHC-associated	invariant	chain	trimerisation	domain
Fer4_15	PF13459.1	gi|379005561|ref|YP_005261233.1|	-	1.1e-11	45.1	0.0	1.3e-11	44.8	0.0	1.1	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|379005561|ref|YP_005261233.1|	-	0.00042	20.6	0.1	0.0015	18.8	0.1	1.8	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_7	PF12838.2	gi|379005561|ref|YP_005261233.1|	-	0.0037	17.5	0.5	0.27	11.6	0.2	2.4	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|379005561|ref|YP_005261233.1|	-	0.0072	15.8	3.3	0.15	11.6	0.9	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_19	PF06902.6	gi|379005561|ref|YP_005261233.1|	-	0.057	13.2	0.3	0.27	11.0	0.2	1.9	1	1	0	1	1	1	0	Divergent	4Fe-4S	mono-cluster
Fer4_2	PF12797.2	gi|379005561|ref|YP_005261233.1|	-	0.063	13.2	0.7	0.063	13.2	0.5	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|379005561|ref|YP_005261233.1|	-	0.079	13.0	0.4	0.19	11.8	0.3	1.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005561|ref|YP_005261233.1|	-	0.08	12.7	0.8	0.44	10.3	0.3	2.0	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|379005561|ref|YP_005261233.1|	-	0.098	12.5	1.1	0.32	10.9	0.2	1.9	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379005561|ref|YP_005261233.1|	-	0.96	9.9	3.7	1.6	9.2	1.0	2.0	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|379005561|ref|YP_005261233.1|	-	7.7	7.3	6.6	37	5.2	2.9	2.1	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF1297	PF06973.7	gi|379005562|ref|YP_005261234.1|	-	2.8e-80	268.0	0.0	3.5e-80	267.7	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|379005562|ref|YP_005261234.1|	-	6.2e-44	148.7	0.0	9.2e-44	148.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_4	PF13535.1	gi|379005562|ref|YP_005261234.1|	-	5.9e-07	29.3	0.0	8.2e-06	25.6	0.0	2.2	1	1	0	1	1	1	1	ATP-grasp	domain
HHH_5	PF14520.1	gi|379005562|ref|YP_005261234.1|	-	1.4	9.1	4.3	5	7.3	3.0	2.1	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
GlutR_N	PF05201.10	gi|379005563|ref|YP_005261235.1|	-	1.1e-29	102.9	0.1	1.1e-29	102.9	0.0	2.4	3	0	0	3	3	3	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
Shikimate_DH	PF01488.15	gi|379005563|ref|YP_005261235.1|	-	1.2e-18	67.5	0.5	3.1e-18	66.1	0.1	1.9	1	1	1	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|379005563|ref|YP_005261235.1|	-	1.8e-10	41.0	0.2	1.8e-10	41.0	0.1	2.4	2	1	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
GlutR_dimer	PF00745.15	gi|379005563|ref|YP_005261235.1|	-	1.6e-06	27.9	8.0	1.6e-06	27.9	5.5	2.4	3	1	0	3	3	2	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
NAD_binding_2	PF03446.10	gi|379005563|ref|YP_005261235.1|	-	9.9e-06	25.4	0.9	2.5e-05	24.1	0.1	2.0	1	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Saccharop_dh	PF03435.13	gi|379005563|ref|YP_005261235.1|	-	1.2e-05	24.5	0.2	1.9e-05	23.8	0.1	1.3	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
ThiF	PF00899.16	gi|379005563|ref|YP_005261235.1|	-	0.00019	21.2	4.6	0.00028	20.7	0.6	2.6	2	1	1	3	3	3	1	ThiF	family
2-Hacid_dh_C	PF02826.14	gi|379005563|ref|YP_005261235.1|	-	0.00081	18.5	0.1	0.0048	16.0	0.1	2.1	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|379005563|ref|YP_005261235.1|	-	0.00083	19.5	1.6	0.0022	18.2	1.1	1.9	1	1	0	1	1	1	1	Putative	NAD(P)-binding
3HCDH_N	PF02737.13	gi|379005563|ref|YP_005261235.1|	-	0.0016	18.1	0.3	0.0016	18.1	0.2	2.5	2	1	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379005563|ref|YP_005261235.1|	-	0.0023	17.6	0.0	0.005	16.5	0.0	1.6	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
adh_short	PF00106.20	gi|379005563|ref|YP_005261235.1|	-	0.0045	16.9	1.0	0.0045	16.9	0.7	2.3	1	1	0	2	2	2	1	short	chain	dehydrogenase
ApbA	PF02558.11	gi|379005563|ref|YP_005261235.1|	-	0.01	15.2	0.1	0.019	14.3	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.7	gi|379005563|ref|YP_005261235.1|	-	0.015	14.6	0.2	0.034	13.5	0.0	1.8	2	0	0	2	2	2	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
FAD_binding_3	PF01494.14	gi|379005563|ref|YP_005261235.1|	-	0.019	14.0	0.2	0.019	14.0	0.2	1.8	2	0	0	2	2	2	0	FAD	binding	domain
KR	PF08659.5	gi|379005563|ref|YP_005261235.1|	-	0.068	12.8	0.1	0.068	12.8	0.1	1.9	2	0	0	2	2	2	0	KR	domain
Pyr_redox_2	PF07992.9	gi|379005563|ref|YP_005261235.1|	-	0.17	11.7	0.6	0.35	10.7	0.4	1.8	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|379005563|ref|YP_005261235.1|	-	0.24	11.8	4.2	0.43	11.0	0.2	3.2	2	1	1	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
WPP	PF13943.1	gi|379005563|ref|YP_005261235.1|	-	0.29	11.3	9.9	2.5	8.3	0.6	2.9	2	1	1	3	3	2	0	WPP	domain
DAO	PF01266.19	gi|379005563|ref|YP_005261235.1|	-	1.6	7.5	13.1	0.15	10.9	1.5	3.1	3	1	1	4	4	4	0	FAD	dependent	oxidoreductase
Acyl-CoA_dh_1	PF00441.19	gi|379005563|ref|YP_005261235.1|	-	6.9	6.7	11.0	10	6.1	3.5	3.1	3	0	0	3	3	3	0	Acyl-CoA	dehydrogenase,	C-terminal	domain
PaRep2b	PF07775.6	gi|379005564|ref|YP_005261236.1|	-	1.8e-21	76.0	0.1	1.9e-21	75.8	0.1	1.0	1	0	0	1	1	1	1	PaRep2b	protein
PaRep2b	PF07775.6	gi|379005565|ref|YP_005261237.1|	-	1.5e-18	66.3	0.1	1.7e-18	66.1	0.1	1.1	1	0	0	1	1	1	1	PaRep2b	protein
PaRep2b	PF07775.6	gi|379005566|ref|YP_005261238.1|	-	9.5e-14	50.4	0.0	1e-13	50.3	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
CbiX	PF01903.12	gi|379005567|ref|YP_005261239.1|	-	0.0033	17.5	0.0	0.32	11.1	0.0	2.8	2	2	0	2	2	2	2	CbiX
zf-TFIIB	PF13453.1	gi|379005568|ref|YP_005261240.1|	-	3.6e-16	58.0	0.8	5.7e-16	57.4	0.6	1.3	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
UPF0547	PF10571.4	gi|379005568|ref|YP_005261240.1|	-	0.011	15.3	0.4	4.1	7.1	0.0	2.2	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
DZR	PF12773.2	gi|379005568|ref|YP_005261240.1|	-	0.021	14.6	0.0	0.029	14.1	0.0	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379005568|ref|YP_005261240.1|	-	0.031	13.4	1.0	1.4	8.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379005568|ref|YP_005261240.1|	-	0.044	13.2	2.3	0.27	10.7	1.6	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF1936	PF09151.5	gi|379005568|ref|YP_005261240.1|	-	0.053	13.0	2.0	6.2	6.4	0.2	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1936)
zf-ISL3	PF14690.1	gi|379005568|ref|YP_005261240.1|	-	0.075	13.0	0.3	2.7	8.0	0.0	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-IS66	PF13005.2	gi|379005568|ref|YP_005261240.1|	-	0.13	12.2	2.6	3.8	7.5	0.8	2.5	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Auto_anti-p27	PF06677.7	gi|379005568|ref|YP_005261240.1|	-	0.33	10.7	2.2	8.4	6.2	0.1	2.2	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-tcix	PF14952.1	gi|379005568|ref|YP_005261240.1|	-	0.73	9.2	3.8	11	5.3	0.4	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Zn-ribbon_8	PF09723.5	gi|379005568|ref|YP_005261240.1|	-	1	9.3	3.4	9.3	6.2	2.4	2.2	1	1	0	1	1	1	0	Zinc	ribbon	domain
Cys_rich_KTR	PF14205.1	gi|379005568|ref|YP_005261240.1|	-	1.5	8.3	4.0	7.2	6.1	2.8	1.9	1	1	0	1	1	1	0	Cysteine-rich	KTR
DNA_ligase_ZBD	PF03119.11	gi|379005568|ref|YP_005261240.1|	-	2.3	8.0	4.7	22	4.8	0.1	2.3	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF1272	PF06906.6	gi|379005568|ref|YP_005261240.1|	-	3	7.7	4.8	10	6.0	0.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
TF_Zn_Ribbon	PF08271.7	gi|379005568|ref|YP_005261240.1|	-	4.3	6.7	5.9	83	2.6	4.1	2.4	1	1	0	1	1	1	0	TFIIB	zinc-binding
zf-RING_3	PF14369.1	gi|379005568|ref|YP_005261240.1|	-	4.7	7.2	5.3	9.7	6.2	1.3	2.3	1	1	1	2	2	2	0	zinc-finger
zf-NADH-PPase	PF09297.6	gi|379005568|ref|YP_005261240.1|	-	4.9	6.7	5.2	18	4.9	0.0	2.5	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|379005568|ref|YP_005261240.1|	-	7	6.2	8.7	2	7.9	0.2	2.7	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
Radical_SAM	PF04055.16	gi|379005569|ref|YP_005261241.1|	-	3e-17	63.2	0.0	6.2e-17	62.2	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|379005569|ref|YP_005261241.1|	-	4.4e-08	33.3	0.0	4.7e-07	30.0	0.0	2.1	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|379005569|ref|YP_005261241.1|	-	6.3e-06	26.4	0.3	1.6e-05	25.0	0.0	1.8	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.1	gi|379005569|ref|YP_005261241.1|	-	3.7e-05	23.7	0.0	7.1e-05	22.8	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Dioxygenase_N	PF04444.9	gi|379005569|ref|YP_005261241.1|	-	0.022	14.7	0.0	0.048	13.6	0.0	1.5	1	0	0	1	1	1	0	Catechol	dioxygenase	N	terminus
DUF1906	PF08924.6	gi|379005569|ref|YP_005261241.1|	-	0.063	13.1	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1906)
Aminotran_3	PF00202.16	gi|379005570|ref|YP_005261242.1|	-	8.9e-62	208.8	0.0	1.3e-61	208.3	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
TP_methylase	PF00590.15	gi|379005572|ref|YP_005261244.1|	-	6.4e-43	146.9	0.4	7.4e-43	146.6	0.2	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
HEM4	PF02602.10	gi|379005573|ref|YP_005261245.1|	-	3.3e-20	72.3	4.9	4e-20	72.0	3.4	1.1	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
DUF1576	PF07613.6	gi|379005574|ref|YP_005261246.1|	-	0.043	13.3	1.9	0.043	13.3	1.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1576)
NAD_binding_7	PF13241.1	gi|379005575|ref|YP_005261247.1|	-	7.4e-21	74.3	0.1	1.3e-20	73.5	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
Rossmann-like	PF10727.4	gi|379005575|ref|YP_005261247.1|	-	0.002	17.8	0.3	0.0043	16.7	0.1	1.7	2	1	0	2	2	2	1	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|379005575|ref|YP_005261247.1|	-	0.0082	15.2	0.1	0.014	14.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|379005575|ref|YP_005261247.1|	-	0.017	14.2	0.0	0.033	13.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
CysG_dimeriser	PF10414.4	gi|379005575|ref|YP_005261247.1|	-	0.022	14.2	0.4	0.051	13.0	0.3	1.6	1	0	0	1	1	1	0	Sirohaem	synthase	dimerisation	region
AlaDh_PNT_C	PF01262.16	gi|379005575|ref|YP_005261247.1|	-	0.034	13.7	0.6	0.09	12.3	0.4	1.7	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Pyr_redox	PF00070.22	gi|379005575|ref|YP_005261247.1|	-	0.05	14.0	0.5	0.12	12.8	0.3	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ALAD	PF00490.16	gi|379005576|ref|YP_005261248.1|	-	6.5e-142	472.1	0.0	7.4e-142	472.0	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
PEP_mutase	PF13714.1	gi|379005576|ref|YP_005261248.1|	-	0.012	14.8	1.2	0.55	9.4	0.1	2.9	3	1	1	4	4	4	0	Phosphoenolpyruvate	phosphomutase
PaREP1	PF05942.6	gi|379005577|ref|YP_005261249.1|	-	4.4e-21	74.9	2.7	6e-21	74.4	1.9	1.2	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
HEPN	PF05168.9	gi|379005577|ref|YP_005261249.1|	-	0.017	15.0	0.2	0.027	14.3	0.1	1.4	1	0	0	1	1	1	0	HEPN	domain
DCP2	PF05026.8	gi|379005577|ref|YP_005261249.1|	-	0.05	13.5	0.1	0.21	11.4	0.0	2.0	2	0	0	2	2	2	0	Dcp2,	box	A	domain
HTH_AsnC-type	PF13404.1	gi|379005579|ref|YP_005261251.1|	-	0.00041	19.8	0.0	0.8	9.2	0.0	2.8	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
Porphobil_deam	PF01379.15	gi|379005580|ref|YP_005261252.1|	-	5.1e-66	221.6	0.0	6.4e-66	221.3	0.0	1.1	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|379005580|ref|YP_005261252.1|	-	1.6e-07	31.3	0.3	3.2e-07	30.3	0.2	1.5	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
Radical_SAM	PF04055.16	gi|379005581|ref|YP_005261253.1|	-	2.3e-26	92.9	0.0	4.5e-26	91.9	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
SPASM	PF13186.1	gi|379005581|ref|YP_005261253.1|	-	3.6e-09	36.8	0.3	8.6e-09	35.6	0.0	1.7	2	0	0	2	2	2	1	Iron-sulfur	cluster-binding	domain
Fer4_14	PF13394.1	gi|379005581|ref|YP_005261253.1|	-	5.6e-09	36.0	0.0	1.1e-08	35.1	0.0	1.4	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379005581|ref|YP_005261253.1|	-	3.3e-07	30.5	0.0	7.3e-07	29.3	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AP_endonuc_2	PF01261.19	gi|379005581|ref|YP_005261253.1|	-	0.018	14.3	0.2	0.2	10.9	0.1	2.4	1	1	1	2	2	2	0	Xylose	isomerase-like	TIM	barrel
EndIII_4Fe-2S	PF10576.4	gi|379005581|ref|YP_005261253.1|	-	0.075	13.2	1.4	0.2	11.9	1.0	1.8	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
BacA	PF02673.13	gi|379005583|ref|YP_005261255.1|	-	6.6e-45	153.3	23.0	8e-45	153.0	16.0	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
RuvA_C	PF07499.8	gi|379005583|ref|YP_005261255.1|	-	0.024	14.8	0.4	0.15	12.2	0.2	2.5	2	0	0	2	2	2	0	RuvA,	C-terminal	domain
DUF2834	PF11196.3	gi|379005583|ref|YP_005261255.1|	-	0.032	14.3	0.8	0.032	14.3	0.6	3.9	3	3	0	4	4	4	0	Protein	of	unknown	function	(DUF2834)
PhosphMutase	PF10143.4	gi|379005583|ref|YP_005261255.1|	-	0.16	11.6	0.1	4	7.0	0.0	2.1	2	0	0	2	2	2	0	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
PGPGW	PF09656.5	gi|379005583|ref|YP_005261255.1|	-	0.8	9.0	10.0	1.9	7.8	0.3	3.4	2	0	0	2	2	2	0	Putative	transmembrane	protein	(PGPGW)
DUF165	PF02592.10	gi|379005584|ref|YP_005261256.1|	-	3.6e-26	92.0	10.7	6.9e-26	91.1	7.4	1.4	1	0	0	1	1	1	1	Uncharacterized	ACR,	YhhQ	family	COG1738
IGPS	PF00218.16	gi|379005585|ref|YP_005261257.1|	-	9.3e-52	175.5	0.0	1.2e-51	175.2	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.16	gi|379005585|ref|YP_005261257.1|	-	2.2e-05	23.8	0.0	5.4e-05	22.5	0.0	1.6	1	1	0	1	1	1	1	Histidine	biosynthesis	protein
FMN_dh	PF01070.13	gi|379005585|ref|YP_005261257.1|	-	0.0049	15.7	0.1	0.0075	15.1	0.1	1.5	1	1	0	1	1	1	1	FMN-dependent	dehydrogenase
Ferritin	PF00210.19	gi|379005585|ref|YP_005261257.1|	-	0.011	15.5	0.0	0.018	14.7	0.0	1.3	1	0	0	1	1	1	0	Ferritin-like	domain
Dus	PF01207.12	gi|379005585|ref|YP_005261257.1|	-	0.016	14.0	0.0	0.023	13.5	0.0	1.2	1	0	0	1	1	1	0	Dihydrouridine	synthase	(Dus)
ThiG	PF05690.9	gi|379005585|ref|YP_005261257.1|	-	0.037	13.0	0.1	0.075	12.1	0.0	1.6	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
Cation_efflux	PF01545.16	gi|379005586|ref|YP_005261258.1|	-	5.2e-50	170.1	7.1	6e-50	169.9	5.0	1.0	1	0	0	1	1	1	1	Cation	efflux	family
AMP-binding_C_2	PF14535.1	gi|379005586|ref|YP_005261258.1|	-	0.008	16.2	1.9	0.016	15.2	1.3	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Peptidase_M50	PF02163.17	gi|379005587|ref|YP_005261259.1|	-	1.3e-28	99.2	0.0	3.6e-28	97.8	0.0	1.7	1	1	0	1	1	1	1	Peptidase	family	M50
PDZ_2	PF13180.1	gi|379005587|ref|YP_005261259.1|	-	0.0008	19.2	0.1	0.014	15.2	0.0	2.7	2	1	0	2	2	2	1	PDZ	domain
DUF4131	PF13567.1	gi|379005588|ref|YP_005261260.1|	-	0.028	13.8	5.8	0.015	14.7	2.5	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4131)
DUF998	PF06197.8	gi|379005588|ref|YP_005261260.1|	-	0.23	10.7	7.8	2.7	7.2	5.4	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF998)
Trp_oprn_chp	PF09534.5	gi|379005588|ref|YP_005261260.1|	-	0.27	10.8	1.7	2.3	7.7	0.1	2.5	3	0	0	3	3	3	0	Tryptophan-associated	transmembrane	protein	(Trp_oprn_chp)
DUF457	PF04307.9	gi|379005588|ref|YP_005261260.1|	-	3.6	6.8	9.6	5.2	6.3	6.6	1.5	1	1	0	1	1	1	0	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
TIP49	PF06068.8	gi|379005589|ref|YP_005261261.1|	-	1e-151	505.2	0.1	1.2e-151	504.9	0.1	1.0	1	0	0	1	1	1	1	TIP49	C-terminus
AAA	PF00004.24	gi|379005589|ref|YP_005261261.1|	-	2.8e-12	46.9	0.9	1.2e-07	31.9	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|379005589|ref|YP_005261261.1|	-	2.1e-09	36.7	5.1	9e-07	28.1	0.0	3.2	3	1	0	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|379005589|ref|YP_005261261.1|	-	8.7e-08	32.3	0.1	6.7e-06	26.2	0.1	2.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|379005589|ref|YP_005261261.1|	-	9.9e-08	32.1	0.1	0.0051	16.9	0.0	2.7	2	1	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|379005589|ref|YP_005261261.1|	-	8.6e-05	22.2	0.1	0.00019	21.1	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|379005589|ref|YP_005261261.1|	-	0.00031	20.2	0.2	0.00097	18.5	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
DnaB_C	PF03796.10	gi|379005589|ref|YP_005261261.1|	-	0.00032	19.6	0.0	0.00073	18.5	0.0	1.5	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
AAA_17	PF13207.1	gi|379005589|ref|YP_005261261.1|	-	0.00053	20.8	0.1	0.0017	19.1	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|379005589|ref|YP_005261261.1|	-	0.00054	19.4	0.1	0.14	11.5	0.0	2.5	2	0	0	2	2	2	1	Sigma-54	interaction	domain
IstB_IS21	PF01695.12	gi|379005589|ref|YP_005261261.1|	-	0.00068	19.1	0.0	0.0017	17.7	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_5	PF07728.9	gi|379005589|ref|YP_005261261.1|	-	0.0013	18.4	1.4	0.0067	16.1	0.0	2.7	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.16	gi|379005589|ref|YP_005261261.1|	-	0.0037	16.4	0.2	0.014	14.5	0.0	1.9	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.1	gi|379005589|ref|YP_005261261.1|	-	0.0037	17.5	0.0	0.011	16.1	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|379005589|ref|YP_005261261.1|	-	0.004	16.2	0.1	0.0088	15.1	0.1	1.5	1	0	0	1	1	1	1	Zeta	toxin
AAA_33	PF13671.1	gi|379005589|ref|YP_005261261.1|	-	0.0052	16.6	0.0	0.013	15.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|379005589|ref|YP_005261261.1|	-	0.015	15.1	0.0	0.98	9.3	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
NACHT	PF05729.7	gi|379005589|ref|YP_005261261.1|	-	0.02	14.5	0.0	0.042	13.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Antitoxin-MazE	PF04014.13	gi|379005589|ref|YP_005261261.1|	-	0.022	14.5	1.1	0.075	12.7	0.1	2.4	2	0	0	2	2	2	0	Antidote-toxin	recognition	MazE
AAA_28	PF13521.1	gi|379005589|ref|YP_005261261.1|	-	0.031	14.2	0.0	0.075	12.9	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
KaiC	PF06745.8	gi|379005589|ref|YP_005261261.1|	-	0.031	13.3	0.0	0.068	12.2	0.0	1.6	1	0	0	1	1	1	0	KaiC
AAA_11	PF13086.1	gi|379005589|ref|YP_005261261.1|	-	0.038	13.5	0.0	0.081	12.4	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
MazG	PF03819.12	gi|379005589|ref|YP_005261261.1|	-	0.046	13.6	0.5	6.3	6.8	0.2	2.7	2	0	0	2	2	2	0	MazG	nucleotide	pyrophosphohydrolase	domain
ABC_tran	PF00005.22	gi|379005589|ref|YP_005261261.1|	-	0.057	13.7	0.0	0.13	12.5	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_24	PF13479.1	gi|379005589|ref|YP_005261261.1|	-	0.063	12.8	0.0	0.12	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.11	gi|379005589|ref|YP_005261261.1|	-	0.064	12.4	0.1	0.13	11.4	0.0	1.4	1	0	0	1	1	1	0	PhoH-like	protein
RNA_helicase	PF00910.17	gi|379005589|ref|YP_005261261.1|	-	0.085	13.0	0.0	0.19	11.8	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF2075	PF09848.4	gi|379005589|ref|YP_005261261.1|	-	0.095	11.6	0.0	0.12	11.2	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
ResIII	PF04851.10	gi|379005589|ref|YP_005261261.1|	-	0.19	11.5	0.2	0.6	9.9	0.0	1.9	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
Parvo_NS1	PF01057.12	gi|379005589|ref|YP_005261261.1|	-	0.24	10.2	0.0	0.4	9.5	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
DUF4443	PF14544.1	gi|379005590|ref|YP_005261262.1|	-	0.027	14.3	0.0	0.044	13.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4443)
Citrate_synt	PF00285.16	gi|379005591|ref|YP_005261263.1|	-	1.6e-131	438.2	0.0	1.8e-131	438.0	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
Malic_M	PF03949.10	gi|379005592|ref|YP_005261264.1|	-	5.2e-69	232.6	1.1	6.4e-69	232.3	0.7	1.1	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|379005592|ref|YP_005261264.1|	-	2.8e-23	82.4	0.2	2.5e-20	72.8	0.1	2.6	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Ribosomal_S8	PF00410.14	gi|379005593|ref|YP_005261265.1|	-	0.066	13.0	0.1	0.088	12.6	0.1	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S8
SHS2_Rpb7-N	PF03876.12	gi|379005594|ref|YP_005261266.1|	-	4.4e-19	68.3	0.0	7.9e-19	67.5	0.0	1.4	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
S1	PF00575.18	gi|379005594|ref|YP_005261266.1|	-	9.1e-09	35.2	0.7	9.1e-09	35.2	0.5	1.6	2	0	0	2	2	2	1	S1	RNA	binding	domain
RNA_pol_Rbc25	PF08292.7	gi|379005594|ref|YP_005261266.1|	-	0.0018	18.4	0.1	0.0076	16.4	0.1	1.9	1	1	0	1	1	1	1	RNA	polymerase	III	subunit	Rpc25
Spt4	PF06093.8	gi|379005595|ref|YP_005261267.1|	-	5.5e-17	61.4	0.2	6.7e-17	61.1	0.1	1.1	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
DZR	PF12773.2	gi|379005595|ref|YP_005261267.1|	-	0.00024	20.8	0.8	0.0003	20.5	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|379005595|ref|YP_005261267.1|	-	0.00043	19.3	2.7	0.00064	18.8	1.9	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379005595|ref|YP_005261267.1|	-	0.00056	19.3	2.5	0.00094	18.5	1.7	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
UPF0547	PF10571.4	gi|379005595|ref|YP_005261267.1|	-	0.0025	17.4	4.6	0.0048	16.5	3.2	1.5	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-RING_4	PF14570.1	gi|379005595|ref|YP_005261267.1|	-	0.0093	15.5	1.6	0.015	14.8	1.1	1.2	1	0	0	1	1	1	1	RING/Ubox	like	zinc-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|379005595|ref|YP_005261267.1|	-	0.017	14.4	0.2	0.059	12.6	0.0	1.9	2	0	0	2	2	2	0	TFIIB	zinc-binding
Prok-RING_1	PF14446.1	gi|379005595|ref|YP_005261267.1|	-	0.03	14.0	1.6	0.048	13.4	1.1	1.3	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-NADH-PPase	PF09297.6	gi|379005595|ref|YP_005261267.1|	-	0.065	12.7	0.1	0.065	12.7	0.1	1.7	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
HypA	PF01155.14	gi|379005595|ref|YP_005261267.1|	-	0.072	12.7	0.3	0.086	12.5	0.2	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
NOB1_Zn_bind	PF08772.6	gi|379005595|ref|YP_005261267.1|	-	0.12	12.1	0.7	0.14	12.0	0.5	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-tcix	PF14952.1	gi|379005595|ref|YP_005261267.1|	-	0.18	11.1	6.0	1.7	8.0	0.1	2.3	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-DHHC	PF01529.15	gi|379005595|ref|YP_005261267.1|	-	0.32	10.3	1.2	0.4	10.0	0.8	1.1	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
RNA_POL_M_15KD	PF02150.11	gi|379005595|ref|YP_005261267.1|	-	1.2	8.8	5.0	4.2	7.1	0.3	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
Prim_Zn_Ribbon	PF08273.7	gi|379005595|ref|YP_005261267.1|	-	1.3	9.1	5.1	1.8	8.7	1.1	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Zn-ribbon_8	PF09723.5	gi|379005595|ref|YP_005261267.1|	-	2.1	8.3	5.4	12	5.9	3.9	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
tRNA-synt_2c	PF01411.14	gi|379005597|ref|YP_005261269.1|	-	3.7e-119	398.5	0.0	6.7e-119	397.6	0.0	1.4	1	1	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|379005597|ref|YP_005261269.1|	-	5.3e-14	51.8	0.2	1.2e-13	50.6	0.2	1.6	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
tRNA-synt_2e	PF02091.10	gi|379005597|ref|YP_005261269.1|	-	0.025	13.6	0.0	0.045	12.8	0.0	1.3	1	0	0	1	1	1	0	Glycyl-tRNA	synthetase	alpha	subunit
tRNA-synt_2b	PF00587.20	gi|379005597|ref|YP_005261269.1|	-	0.16	11.5	0.0	0.36	10.3	0.0	1.5	1	0	0	1	1	1	0	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
GST_C_2	PF13410.1	gi|379005597|ref|YP_005261269.1|	-	1.8	8.4	0.0	1.8	8.4	0.0	3.0	3	0	0	3	3	3	0	Glutathione	S-transferase,	C-terminal	domain
UBA	PF00627.26	gi|379005598|ref|YP_005261270.1|	-	5.2e-08	32.5	0.1	1.6e-07	30.9	0.0	1.8	2	0	0	2	2	2	1	UBA/TS-N	domain
NAC	PF01849.13	gi|379005598|ref|YP_005261270.1|	-	1.3e-05	24.5	0.1	2.8e-05	23.5	0.1	1.6	1	0	0	1	1	1	1	NAC	domain
DUF3562	PF12085.3	gi|379005598|ref|YP_005261270.1|	-	0.063	13.1	0.8	0.24	11.2	0.2	2.2	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3562)
TusA	PF01206.12	gi|379005598|ref|YP_005261270.1|	-	0.079	12.5	0.0	0.43	10.2	0.0	2.0	2	0	0	2	2	2	0	Sulfurtransferase	TusA
B5	PF03484.10	gi|379005598|ref|YP_005261270.1|	-	0.12	12.1	0.0	0.27	11.1	0.0	1.6	1	0	0	1	1	1	0	tRNA	synthetase	B5	domain
Ribosomal_L16	PF00252.13	gi|379005599|ref|YP_005261271.1|	-	5.5e-35	120.0	0.1	6.4e-35	119.8	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Hydrolase_2	PF07486.7	gi|379005599|ref|YP_005261271.1|	-	0.037	14.5	0.0	0.058	13.9	0.0	1.3	1	0	0	1	1	1	0	Cell	Wall	Hydrolase
DUF2192	PF09958.4	gi|379005600|ref|YP_005261272.1|	-	6.3e-92	306.9	4.9	7.2e-92	306.8	3.4	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
Med10	PF09748.4	gi|379005600|ref|YP_005261272.1|	-	0.1	12.3	0.0	0.2	11.4	0.0	1.5	1	1	0	1	1	1	0	Transcription	factor	subunit	Med10	of	Mediator	complex
Abhydrolase_6	PF12697.2	gi|379005601|ref|YP_005261273.1|	-	4.7e-19	69.1	0.3	1.7e-17	64.0	0.2	2.6	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|379005601|ref|YP_005261273.1|	-	1e-17	64.2	0.0	6.9e-17	61.5	0.0	1.9	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Esterase	PF00756.15	gi|379005601|ref|YP_005261273.1|	-	1.3e-08	34.6	0.0	1.6e-08	34.3	0.0	1.3	1	0	0	1	1	1	1	Putative	esterase
Abhydrolase_1	PF00561.15	gi|379005601|ref|YP_005261273.1|	-	5.5e-08	32.6	0.0	3.7e-06	26.6	0.1	2.1	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
PGAP1	PF07819.8	gi|379005601|ref|YP_005261273.1|	-	5.5e-06	26.1	0.0	7.4e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	PGAP1-like	protein
Peptidase_S9	PF00326.16	gi|379005601|ref|YP_005261273.1|	-	4.3e-05	22.8	0.0	8.8e-05	21.8	0.0	1.4	2	0	0	2	2	2	1	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.11	gi|379005601|ref|YP_005261273.1|	-	0.0013	18.2	0.0	0.56	9.6	0.0	2.2	1	1	1	2	2	2	2	Phospholipase/Carboxylesterase
Peptidase_S15	PF02129.13	gi|379005601|ref|YP_005261273.1|	-	0.0045	16.4	0.0	0.012	15.1	0.0	1.6	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Lipase_3	PF01764.20	gi|379005601|ref|YP_005261273.1|	-	0.0049	16.4	0.0	0.0074	15.9	0.0	1.4	1	0	0	1	1	1	1	Lipase	(class	3)
DLH	PF01738.13	gi|379005601|ref|YP_005261273.1|	-	0.0077	15.5	0.0	0.14	11.3	0.0	2.5	1	1	0	2	2	2	1	Dienelactone	hydrolase	family
BAAT_C	PF08840.6	gi|379005601|ref|YP_005261273.1|	-	0.012	15.3	0.0	0.018	14.7	0.0	1.3	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
FSH1	PF03959.8	gi|379005601|ref|YP_005261273.1|	-	0.013	14.9	0.0	0.022	14.1	0.0	1.4	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
Thioesterase	PF00975.15	gi|379005601|ref|YP_005261273.1|	-	0.015	15.5	0.0	0.019	15.2	0.0	1.3	1	0	0	1	1	1	0	Thioesterase	domain
DUF2920	PF11144.3	gi|379005601|ref|YP_005261273.1|	-	0.027	13.5	0.0	0.034	13.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2920)
Abhydrolase_3	PF07859.8	gi|379005601|ref|YP_005261273.1|	-	0.1	12.1	0.1	0.24	10.9	0.0	1.7	1	1	0	1	1	1	0	alpha/beta	hydrolase	fold
DUF2048	PF09752.4	gi|379005601|ref|YP_005261273.1|	-	0.15	10.8	0.0	0.24	10.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2048)
PAC2	PF09754.4	gi|379005602|ref|YP_005261274.1|	-	3.8e-45	154.4	0.2	4.7e-45	154.1	0.2	1.0	1	0	0	1	1	1	1	PAC2	family
PaREP1	PF05942.6	gi|379005603|ref|YP_005261275.1|	-	5.5e-24	84.2	8.6	7.3e-24	83.8	6.0	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
TOM20_plant	PF06552.7	gi|379005603|ref|YP_005261275.1|	-	0.063	12.8	0.2	0.1	12.1	0.1	1.4	1	1	0	1	1	1	0	Plant	specific	mitochondrial	import	receptor	subunit	TOM20
DUF4631	PF15450.1	gi|379005603|ref|YP_005261275.1|	-	0.11	10.7	1.9	0.099	10.9	0.6	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4631)
Cytochrom_C552	PF02335.10	gi|379005603|ref|YP_005261275.1|	-	0.21	10.2	0.8	0.3	9.7	0.5	1.3	1	0	0	1	1	1	0	Cytochrome	c552
DUF4398	PF14346.1	gi|379005603|ref|YP_005261275.1|	-	4	7.5	10.1	5.9	7.0	7.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4398)
Ribosomal_L5_C	PF00673.16	gi|379005604|ref|YP_005261276.1|	-	7.4e-26	89.7	0.0	2.6e-25	87.9	0.0	1.8	2	0	0	2	2	2	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|379005604|ref|YP_005261276.1|	-	2.1e-15	56.2	0.0	3.6e-15	55.4	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L5
Metallophos_2	PF12850.2	gi|379005605|ref|YP_005261277.1|	-	4.2e-28	98.1	0.0	4.9e-28	97.9	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|379005605|ref|YP_005261277.1|	-	4.7e-05	22.6	0.0	0.0065	15.6	0.0	2.1	2	0	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|379005605|ref|YP_005261277.1|	-	0.00016	21.1	0.1	0.0072	15.7	0.0	2.2	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Usp	PF00582.21	gi|379005605|ref|YP_005261277.1|	-	0.052	13.7	0.6	0.39	10.8	0.4	2.0	1	1	0	1	1	1	0	Universal	stress	protein	family
CoA_binding_2	PF13380.1	gi|379005605|ref|YP_005261277.1|	-	0.12	12.5	0.0	12	6.0	0.0	2.4	2	0	0	2	2	2	0	CoA	binding	domain
DUF1947	PF09183.5	gi|379005605|ref|YP_005261277.1|	-	0.13	11.9	0.0	0.21	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1947)
Nol1_Nop2_Fmu	PF01189.12	gi|379005606|ref|YP_005261278.1|	-	7.5e-32	110.8	0.0	2.2e-31	109.3	0.0	1.7	1	1	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|379005606|ref|YP_005261278.1|	-	5.5e-08	32.5	0.0	1.1e-07	31.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|379005606|ref|YP_005261278.1|	-	1.8e-05	25.2	0.1	5.5e-05	23.7	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|379005606|ref|YP_005261278.1|	-	0.00019	21.4	0.1	0.00036	20.5	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|379005606|ref|YP_005261278.1|	-	0.00088	19.2	0.0	0.0016	18.4	0.0	1.4	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_25	PF13649.1	gi|379005606|ref|YP_005261278.1|	-	0.0041	17.4	0.0	0.048	14.0	0.0	2.3	2	0	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.14	gi|379005606|ref|YP_005261278.1|	-	0.0059	16.1	0.1	0.024	14.1	0.0	1.8	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Ubie_methyltran	PF01209.13	gi|379005606|ref|YP_005261278.1|	-	0.028	13.5	0.0	0.4	9.7	0.0	2.1	2	0	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
RrnaAD	PF00398.15	gi|379005606|ref|YP_005261278.1|	-	0.036	13.0	0.0	0.062	12.3	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Methyltransf_24	PF13578.1	gi|379005606|ref|YP_005261278.1|	-	0.044	14.6	0.0	0.16	12.7	0.0	1.9	2	0	0	2	2	2	0	Methyltransferase	domain
MTS	PF05175.9	gi|379005606|ref|YP_005261278.1|	-	0.085	12.2	0.0	0.13	11.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_11	PF08241.7	gi|379005606|ref|YP_005261278.1|	-	0.14	12.6	0.0	0.45	11.0	0.0	1.9	1	0	0	1	1	1	0	Methyltransferase	domain
Abi	PF02517.11	gi|379005607|ref|YP_005261279.1|	-	4.9e-12	45.8	20.7	6e-11	42.3	14.3	2.4	1	1	0	1	1	1	1	CAAX	protease	self-immunity
MMS19_N	PF14500.1	gi|379005609|ref|YP_005261281.1|	-	0.13	11.5	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	Dos2-interacting	transcription	regulator	of	RNA-Pol-II
Radical_SAM	PF04055.16	gi|379005610|ref|YP_005261282.1|	-	1.2e-08	35.3	0.0	1.4e-08	35.0	0.0	1.2	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379005610|ref|YP_005261282.1|	-	0.00071	19.5	0.0	0.0011	18.9	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|379005610|ref|YP_005261282.1|	-	0.16	12.1	0.0	0.25	11.4	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
DUF2398	PF09661.5	gi|379005611|ref|YP_005261283.1|	-	0.031	13.0	0.0	0.034	12.8	0.0	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2398)
SDF	PF00375.13	gi|379005612|ref|YP_005261284.1|	-	0.0031	16.3	0.4	0.0034	16.2	0.2	1.0	1	0	0	1	1	1	1	Sodium:dicarboxylate	symporter	family
DUF3318	PF11780.3	gi|379005612|ref|YP_005261284.1|	-	0.011	15.3	0.2	0.011	15.2	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3318)
Col_cuticle_N	PF01484.12	gi|379005612|ref|YP_005261284.1|	-	0.22	11.2	3.8	4.3	7.1	0.0	2.1	2	0	0	2	2	2	0	Nematode	cuticle	collagen	N-terminal	domain
DUF1212	PF06738.7	gi|379005612|ref|YP_005261284.1|	-	0.35	10.2	2.0	0.34	10.3	1.4	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1212)
HEPN	PF05168.9	gi|379005613|ref|YP_005261285.1|	-	1.1e-25	89.7	0.0	1.3e-25	89.6	0.0	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.18	gi|379005614|ref|YP_005261286.1|	-	8.9e-10	38.7	0.0	1.1e-09	38.4	0.0	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|379005614|ref|YP_005261286.1|	-	0.11	12.5	0.0	0.15	12.1	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
ETF	PF01012.16	gi|379005615|ref|YP_005261287.1|	-	7.9e-41	139.4	5.2	1.1e-40	139.0	3.6	1.2	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Exo_endo_phos	PF03372.18	gi|379005615|ref|YP_005261287.1|	-	0.2	11.5	0.0	0.26	11.1	0.0	1.2	1	0	0	1	1	1	0	Endonuclease/Exonuclease/phosphatase	family
Mastoparan	PF08249.6	gi|379005615|ref|YP_005261287.1|	-	0.87	10.2	4.0	2.2	9.0	2.1	2.3	1	1	0	1	1	1	0	Mastoparan	protein
ETF_alpha	PF00766.14	gi|379005616|ref|YP_005261288.1|	-	1.9e-31	107.4	0.1	4.9e-31	106.1	0.0	1.7	2	0	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|379005616|ref|YP_005261288.1|	-	9.3e-21	74.2	5.1	1.9e-20	73.2	3.6	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
Proteasome	PF00227.21	gi|379005617|ref|YP_005261289.1|	-	4.7e-53	179.3	0.5	5.2e-53	179.1	0.3	1.0	1	0	0	1	1	1	1	Proteasome	subunit
RTC	PF01137.16	gi|379005618|ref|YP_005261290.1|	-	1.2e-88	295.7	0.0	2e-88	295.0	0.0	1.3	1	1	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|379005618|ref|YP_005261290.1|	-	1.1e-29	102.4	1.6	2.2e-29	101.4	1.1	1.5	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
SAM_adeno_trans	PF01887.11	gi|379005619|ref|YP_005261291.1|	-	3.2e-91	304.9	0.0	3.7e-91	304.7	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
F_bP_aldolase	PF01116.15	gi|379005619|ref|YP_005261291.1|	-	0.078	12.0	0.0	0.1	11.7	0.0	1.2	1	0	0	1	1	1	0	Fructose-bisphosphate	aldolase	class-II
NOG1	PF06858.9	gi|379005620|ref|YP_005261292.1|	-	7.4e-22	76.9	0.0	2e-21	75.5	0.0	1.8	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
MMR_HSR1	PF01926.18	gi|379005620|ref|YP_005261292.1|	-	1.6e-17	63.4	0.0	3.6e-17	62.3	0.0	1.6	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|379005620|ref|YP_005261292.1|	-	4.9e-14	51.8	0.0	7.7e-14	51.2	0.0	1.3	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|379005620|ref|YP_005261292.1|	-	3.9e-05	24.1	0.0	6.9e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Miro-like	protein
AIG1	PF04548.11	gi|379005620|ref|YP_005261292.1|	-	0.00039	19.5	0.0	0.00095	18.3	0.0	1.7	1	1	0	1	1	1	1	AIG1	family
Septin	PF00735.13	gi|379005620|ref|YP_005261292.1|	-	0.011	14.8	0.0	1.8	7.5	0.0	2.3	1	1	1	2	2	2	0	Septin
Dynamin_N	PF00350.18	gi|379005620|ref|YP_005261292.1|	-	0.04	13.7	0.4	3	7.6	0.3	2.5	1	1	0	1	1	1	0	Dynamin	family
DUF1492	PF07374.6	gi|379005620|ref|YP_005261292.1|	-	0.054	13.5	0.1	1.5	8.9	0.0	2.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1492)
Nuf2	PF03800.9	gi|379005620|ref|YP_005261292.1|	-	0.068	13.1	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Nuf2	family
FtsK_SpoIIIE	PF01580.13	gi|379005620|ref|YP_005261292.1|	-	0.075	12.5	0.0	0.24	10.8	0.0	1.8	1	1	1	2	2	2	0	FtsK/SpoIIIE	family
ATP_bind_1	PF03029.12	gi|379005620|ref|YP_005261292.1|	-	0.097	12.1	0.0	3.2	7.2	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
Ras	PF00071.17	gi|379005620|ref|YP_005261292.1|	-	0.13	11.6	0.0	0.53	9.6	0.0	1.9	1	1	0	1	1	1	0	Ras	family
HpaB_N	PF11794.3	gi|379005621|ref|YP_005261293.1|	-	2e-65	220.8	0.1	3e-65	220.2	0.1	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|379005621|ref|YP_005261293.1|	-	1.6e-44	151.2	1.3	1.6e-44	151.2	0.9	1.7	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
BPD_transp_2	PF02653.11	gi|379005622|ref|YP_005261294.1|	-	1.7e-17	63.2	35.1	2.9e-17	62.5	24.3	1.3	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
BPD_transp_2	PF02653.11	gi|379005623|ref|YP_005261295.1|	-	2.1e-18	66.2	30.4	2.4e-18	66.0	21.1	1.0	1	0	0	1	1	1	1	Branched-chain	amino	acid	transport	system	/	permease	component
Peripla_BP_6	PF13458.1	gi|379005624|ref|YP_005261296.1|	-	3e-29	102.4	0.0	1e-28	100.6	0.0	1.8	1	1	0	1	1	1	1	Periplasmic	binding	protein
Peripla_BP_5	PF13433.1	gi|379005624|ref|YP_005261296.1|	-	2.5e-07	29.7	0.1	5.3e-06	25.4	0.0	2.5	3	0	0	3	3	3	1	Periplasmic	binding	protein	domain
TIR_2	PF13676.1	gi|379005624|ref|YP_005261296.1|	-	0.038	14.1	0.0	0.08	13.0	0.0	1.5	1	0	0	1	1	1	0	TIR	domain
ANF_receptor	PF01094.23	gi|379005624|ref|YP_005261296.1|	-	0.042	12.6	0.0	0.097	11.4	0.0	1.6	2	0	0	2	2	2	0	Receptor	family	ligand	binding	region
CoA_transf_3	PF02515.12	gi|379005625|ref|YP_005261297.1|	-	4.2e-34	117.4	0.0	6.4e-34	116.8	0.0	1.3	1	0	0	1	1	1	1	CoA-transferase	family	III
CoA_transf_3	PF02515.12	gi|379005626|ref|YP_005261298.1|	-	1.4e-54	184.2	0.0	1.9e-54	183.8	0.0	1.1	1	0	0	1	1	1	1	CoA-transferase	family	III
ABC_tran	PF00005.22	gi|379005627|ref|YP_005261299.1|	-	5.5e-33	114.1	0.0	8.8e-33	113.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005627|ref|YP_005261299.1|	-	3.4e-14	53.5	0.5	1.2e-08	35.3	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|379005627|ref|YP_005261299.1|	-	8.3e-05	21.8	0.1	0.11	11.4	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
Dynamin_N	PF00350.18	gi|379005627|ref|YP_005261299.1|	-	0.00027	20.8	0.0	0.00042	20.1	0.0	1.3	1	0	0	1	1	1	1	Dynamin	family
SMC_N	PF02463.14	gi|379005627|ref|YP_005261299.1|	-	0.00041	19.6	2.1	0.065	12.4	1.5	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|379005627|ref|YP_005261299.1|	-	0.0014	18.9	2.1	0.0035	17.6	0.5	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|379005627|ref|YP_005261299.1|	-	0.0019	17.7	0.1	0.0036	16.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|379005627|ref|YP_005261299.1|	-	0.0034	17.2	0.2	0.2	11.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|379005627|ref|YP_005261299.1|	-	0.019	15.1	0.5	0.8	9.8	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379005627|ref|YP_005261299.1|	-	0.021	14.8	3.5	0.11	12.4	2.4	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
T2SE	PF00437.15	gi|379005627|ref|YP_005261299.1|	-	0.023	13.6	2.2	0.028	13.3	0.2	1.8	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
MobB	PF03205.9	gi|379005627|ref|YP_005261299.1|	-	0.024	14.3	0.1	0.046	13.4	0.1	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.17	gi|379005627|ref|YP_005261299.1|	-	0.026	13.9	0.0	0.044	13.2	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_10	PF12846.2	gi|379005627|ref|YP_005261299.1|	-	0.027	13.9	0.2	1.1	8.5	0.0	2.1	2	0	0	2	2	2	0	AAA-like	domain
AIG1	PF04548.11	gi|379005627|ref|YP_005261299.1|	-	0.034	13.2	0.4	0.1	11.7	0.1	1.8	2	0	0	2	2	2	0	AIG1	family
AAA_33	PF13671.1	gi|379005627|ref|YP_005261299.1|	-	0.046	13.5	0.1	0.24	11.2	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|379005627|ref|YP_005261299.1|	-	0.056	13.6	0.6	0.15	12.2	0.4	2.0	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|379005627|ref|YP_005261299.1|	-	0.069	13.1	0.0	0.14	12.1	0.0	1.5	1	0	0	1	1	1	0	AAA	ATPase	domain
UPF0079	PF02367.12	gi|379005627|ref|YP_005261299.1|	-	0.07	12.7	0.1	0.16	11.5	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_30	PF13604.1	gi|379005627|ref|YP_005261299.1|	-	0.084	12.4	0.1	0.24	10.9	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379005627|ref|YP_005261299.1|	-	0.094	12.4	0.2	0.22	11.2	0.2	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF258	PF03193.11	gi|379005627|ref|YP_005261299.1|	-	0.097	11.8	0.1	0.14	11.3	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|379005627|ref|YP_005261299.1|	-	0.17	11.2	0.8	0.37	10.2	0.1	1.8	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_17	PF13207.1	gi|379005627|ref|YP_005261299.1|	-	0.41	11.4	2.9	1.3	9.8	0.9	2.4	2	1	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|379005628|ref|YP_005261300.1|	-	1.1e-23	84.1	0.0	1.4e-23	83.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005628|ref|YP_005261300.1|	-	6.7e-09	36.1	5.3	1.8e-05	24.8	0.1	2.1	2	0	0	2	2	2	2	AAA	domain
BCA_ABC_TP_C	PF12399.3	gi|379005628|ref|YP_005261300.1|	-	1.5e-08	34.1	0.4	2.8e-08	33.2	0.3	1.5	1	0	0	1	1	1	1	Branched-chain	amino	acid	ATP-binding	cassette	transporter
AAA	PF00004.24	gi|379005628|ref|YP_005261300.1|	-	0.00088	19.4	1.3	0.16	12.1	0.9	2.9	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|379005628|ref|YP_005261300.1|	-	0.001	18.5	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|379005628|ref|YP_005261300.1|	-	0.0012	18.1	0.8	0.43	9.7	0.1	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_19	PF13245.1	gi|379005628|ref|YP_005261300.1|	-	0.0037	16.9	0.1	0.0084	15.8	0.1	1.7	1	1	0	1	1	1	1	Part	of	AAA	domain
DUF258	PF03193.11	gi|379005628|ref|YP_005261300.1|	-	0.0042	16.2	0.0	0.0065	15.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|379005628|ref|YP_005261300.1|	-	0.0042	17.2	2.0	0.11	12.5	1.4	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379005628|ref|YP_005261300.1|	-	0.0046	17.2	0.3	0.0082	16.4	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.4	gi|379005628|ref|YP_005261300.1|	-	0.0051	15.4	1.9	0.37	9.3	0.1	2.1	2	0	0	2	2	2	2	Predicted	ATPase	of	the	ABC	class
UPF0079	PF02367.12	gi|379005628|ref|YP_005261300.1|	-	0.0085	15.7	0.0	0.022	14.3	0.0	1.7	1	0	0	1	1	1	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_14	PF13173.1	gi|379005628|ref|YP_005261300.1|	-	0.02	14.7	0.1	0.4	10.5	0.0	2.3	2	1	0	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|379005628|ref|YP_005261300.1|	-	0.023	15.4	2.9	0.2	12.5	2.0	2.2	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379005628|ref|YP_005261300.1|	-	0.029	14.3	0.2	0.061	13.2	0.1	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.1	gi|379005628|ref|YP_005261300.1|	-	0.032	13.2	0.0	0.05	12.6	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
SRP54	PF00448.17	gi|379005628|ref|YP_005261300.1|	-	0.13	11.7	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.1	gi|379005628|ref|YP_005261300.1|	-	0.15	12.0	0.1	0.2	11.5	0.1	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_25	PF13481.1	gi|379005628|ref|YP_005261300.1|	-	0.17	11.2	0.5	0.59	9.5	0.4	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|379005628|ref|YP_005261300.1|	-	0.18	10.2	0.0	0.23	9.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
adh_short_C2	PF13561.1	gi|379005629|ref|YP_005261301.1|	-	1.5e-31	110.0	0.6	1.9e-31	109.6	0.4	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|379005629|ref|YP_005261301.1|	-	1.8e-31	109.3	1.8	2.7e-31	108.7	1.3	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|379005629|ref|YP_005261301.1|	-	3.7e-09	36.4	0.5	5.1e-09	36.0	0.3	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|379005629|ref|YP_005261301.1|	-	0.0023	17.3	1.0	0.0087	15.5	0.7	2.0	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.8	gi|379005629|ref|YP_005261301.1|	-	0.17	11.0	2.7	0.2	10.9	1.0	1.6	2	0	0	2	2	2	0	NmrA-like	family
HAD	PF12710.2	gi|379005629|ref|YP_005261301.1|	-	0.19	11.8	0.3	0.43	10.7	0.2	1.9	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
MEF2_binding	PF09047.5	gi|379005629|ref|YP_005261301.1|	-	0.5	10.0	0.0	0.5	10.0	0.0	2.3	3	0	0	3	3	3	0	MEF2	binding
4HBT	PF03061.17	gi|379005630|ref|YP_005261302.1|	-	1.8e-12	47.2	0.0	2.7e-12	46.6	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|379005630|ref|YP_005261302.1|	-	3e-12	47.0	0.0	3.6e-12	46.8	0.0	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
Acyl-ACP_TE	PF01643.12	gi|379005630|ref|YP_005261302.1|	-	2.2e-06	26.8	0.0	2.3e-06	26.7	0.0	1.1	1	0	0	1	1	1	1	Acyl-ACP	thioesterase
ECH	PF00378.15	gi|379005631|ref|YP_005261303.1|	-	5.3e-58	196.0	0.0	6e-58	195.8	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|379005631|ref|YP_005261303.1|	-	0.0096	15.7	0.4	0.83	9.4	0.0	2.6	2	1	1	3	3	3	1	Peptidase	family	S49
CLP_protease	PF00574.18	gi|379005631|ref|YP_005261303.1|	-	0.014	15.0	0.2	3	7.4	0.1	2.3	2	0	0	2	2	2	0	Clp	protease
FTHFS	PF01268.14	gi|379005631|ref|YP_005261303.1|	-	0.021	12.8	0.0	0.066	11.1	0.1	1.6	2	0	0	2	2	2	0	Formate--tetrahydrofolate	ligase
Plectin	PF00681.15	gi|379005631|ref|YP_005261303.1|	-	0.092	12.2	0.1	5.1	6.7	0.0	2.4	2	0	0	2	2	2	0	Plectin	repeat
ADH_N	PF08240.7	gi|379005632|ref|YP_005261304.1|	-	1.2e-29	102.2	2.4	3e-29	100.9	1.7	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|379005632|ref|YP_005261304.1|	-	9.5e-19	67.2	0.6	1.4e-18	66.6	0.4	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|379005632|ref|YP_005261304.1|	-	3.6e-06	27.8	0.1	6.4e-06	27.0	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
DUF35	PF01796.12	gi|379005633|ref|YP_005261305.1|	-	7.2e-15	54.9	0.4	9.8e-15	54.5	0.2	1.2	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|379005633|ref|YP_005261305.1|	-	2.4e-12	46.3	0.0	3.9e-12	45.6	0.0	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin	PF00301.15	gi|379005633|ref|YP_005261305.1|	-	0.038	13.8	0.4	0.063	13.1	0.3	1.3	1	0	0	1	1	1	0	Rubredoxin
Thiolase_N	PF00108.18	gi|379005634|ref|YP_005261306.1|	-	1.2e-16	60.5	0.4	1.2e-14	53.9	0.1	2.4	3	0	0	3	3	3	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379005634|ref|YP_005261306.1|	-	1.4e-12	47.0	0.1	4.1e-10	39.1	0.0	2.5	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|379005634|ref|YP_005261306.1|	-	3e-07	30.1	8.4	3.6e-05	23.3	0.8	2.9	2	1	1	3	3	3	2	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|379005634|ref|YP_005261306.1|	-	1.2e-05	24.8	0.7	4.7e-05	22.9	0.1	2.0	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Ketoacyl-synt_C	PF02801.17	gi|379005634|ref|YP_005261306.1|	-	0.00015	21.5	0.6	0.26	11.1	0.0	3.3	4	0	0	4	4	4	2	Beta-ketoacyl	synthase,	C-terminal	domain
FAE1_CUT1_RppA	PF08392.7	gi|379005634|ref|YP_005261306.1|	-	0.011	14.8	0.0	0.035	13.1	0.0	1.8	2	0	0	2	2	2	0	FAE1/Type	III	polyketide	synthase-like	protein
Jag_N	PF14804.1	gi|379005634|ref|YP_005261306.1|	-	0.097	12.7	0.0	0.27	11.2	0.0	1.8	1	0	0	1	1	1	0	Jag	N-terminus
Acyl-CoA_dh_1	PF00441.19	gi|379005635|ref|YP_005261307.1|	-	8.7e-40	136.2	0.6	1.4e-39	135.5	0.4	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|379005635|ref|YP_005261307.1|	-	1.6e-27	96.3	0.0	3.5e-27	95.2	0.0	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|379005635|ref|YP_005261307.1|	-	1.4e-18	67.4	0.1	2e-18	66.9	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379005635|ref|YP_005261307.1|	-	1.2e-16	59.9	0.0	4.5e-16	58.0	0.0	2.0	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	middle	domain
HpaB_N	PF11794.3	gi|379005635|ref|YP_005261307.1|	-	0.0031	16.9	0.0	0.014	14.7	0.0	2.0	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|379005635|ref|YP_005261307.1|	-	0.021	13.6	0.1	0.04	12.7	0.0	1.3	1	0	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Thiolase_N	PF00108.18	gi|379005636|ref|YP_005261308.1|	-	3e-61	206.7	0.0	5.2e-61	205.9	0.0	1.4	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|379005636|ref|YP_005261308.1|	-	1.3e-46	157.0	0.9	2.1e-46	156.3	0.6	1.3	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|379005636|ref|YP_005261308.1|	-	1.2e-06	28.2	0.0	0.00019	21.0	0.0	2.9	2	1	1	3	3	3	1	Beta-ketoacyl	synthase,	N-terminal	domain
SpoVAD	PF07451.6	gi|379005636|ref|YP_005261308.1|	-	0.0043	15.5	0.1	0.02	13.3	0.0	2.0	2	1	0	2	2	2	1	Stage	V	sporulation	protein	AD	(SpoVAD)
DUF3117	PF11314.3	gi|379005636|ref|YP_005261308.1|	-	0.11	12.0	0.2	5.9	6.5	0.0	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3117)
E3_binding	PF02817.12	gi|379005636|ref|YP_005261308.1|	-	0.13	11.9	0.2	0.38	10.4	0.2	1.8	1	0	0	1	1	1	0	e3	binding	domain
Abhydrolase_3	PF07859.8	gi|379005637|ref|YP_005261309.1|	-	4.6e-75	251.8	0.0	5.6e-75	251.5	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.23	gi|379005637|ref|YP_005261309.1|	-	1.2e-10	40.7	0.0	2.4e-10	39.7	0.0	1.4	1	1	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_5	PF12695.2	gi|379005637|ref|YP_005261309.1|	-	1.2e-07	31.5	0.1	1.6e-07	31.1	0.1	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
DUF2424	PF10340.4	gi|379005637|ref|YP_005261309.1|	-	5.8e-06	25.2	0.0	8e-06	24.7	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2424)
Abhydrolase_6	PF12697.2	gi|379005637|ref|YP_005261309.1|	-	6.1e-06	26.2	0.2	9.1e-06	25.7	0.2	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.7	gi|379005637|ref|YP_005261309.1|	-	0.00021	19.8	0.2	0.25	9.7	0.1	2.1	1	1	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Chlorophyllase2	PF12740.2	gi|379005637|ref|YP_005261309.1|	-	0.0016	17.3	0.0	0.0024	16.7	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Peptidase_S9	PF00326.16	gi|379005637|ref|YP_005261309.1|	-	0.0049	16.1	0.1	0.0083	15.3	0.1	1.4	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Peptidase_S15	PF02129.13	gi|379005637|ref|YP_005261309.1|	-	0.0052	16.2	0.0	0.32	10.3	0.0	2.1	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
DLH	PF01738.13	gi|379005637|ref|YP_005261309.1|	-	0.02	14.2	0.0	0.43	9.8	0.0	2.5	1	1	1	2	2	2	0	Dienelactone	hydrolase	family
DUF2974	PF11187.3	gi|379005637|ref|YP_005261309.1|	-	0.042	13.2	0.1	0.063	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2974)
Esterase_phd	PF10503.4	gi|379005637|ref|YP_005261309.1|	-	0.1	11.8	0.7	0.61	9.2	0.5	2.1	1	1	0	1	1	1	0	Esterase	PHB	depolymerase
3HCDH_N	PF02737.13	gi|379005638|ref|YP_005261310.1|	-	9.6e-67	224.1	0.0	1.3e-66	223.7	0.0	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|379005638|ref|YP_005261310.1|	-	1.8e-50	169.2	0.1	3.3e-28	97.9	0.0	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|379005638|ref|YP_005261310.1|	-	1.2e-06	28.3	0.0	2.1e-06	27.5	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|379005638|ref|YP_005261310.1|	-	7.9e-06	25.7	0.0	1.4e-05	24.9	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|379005638|ref|YP_005261310.1|	-	6e-05	22.4	0.0	0.0001	21.7	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|379005638|ref|YP_005261310.1|	-	0.0013	19.1	0.1	0.0031	17.9	0.1	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Pyr_redox	PF00070.22	gi|379005638|ref|YP_005261310.1|	-	0.0063	16.9	0.2	0.016	15.5	0.2	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|379005638|ref|YP_005261310.1|	-	0.0074	15.8	0.0	0.013	15.1	0.0	1.3	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|379005638|ref|YP_005261310.1|	-	0.0078	15.3	0.3	0.022	13.9	0.2	1.8	1	1	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|379005638|ref|YP_005261310.1|	-	0.033	14.0	0.0	0.051	13.4	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|379005638|ref|YP_005261310.1|	-	0.035	14.1	0.1	0.88	9.5	0.1	2.5	2	0	0	2	2	2	0	TrkA-N	domain
XdhC_C	PF13478.1	gi|379005638|ref|YP_005261310.1|	-	0.067	13.5	0.0	0.11	12.7	0.0	1.4	1	0	0	1	1	1	0	XdhC	Rossmann	domain
ECH	PF00378.15	gi|379005639|ref|YP_005261311.1|	-	1.1e-59	201.5	0.1	1.2e-59	201.3	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
ECH_C	PF13766.1	gi|379005639|ref|YP_005261311.1|	-	0.00066	19.8	0.0	0.0011	19.1	0.0	1.3	1	0	0	1	1	1	1	2-enoyl-CoA	Hydratase	C-terminal	region
DUF2092	PF09865.4	gi|379005639|ref|YP_005261311.1|	-	0.064	12.3	0.0	0.32	10.0	0.0	1.9	2	0	0	2	2	2	0	Predicted	periplasmic	protein	(DUF2092)
Wyosine_form	PF08608.7	gi|379005640|ref|YP_005261312.1|	-	1.2e-18	66.9	0.0	2.4e-18	65.9	0.0	1.6	1	0	0	1	1	1	1	Wyosine	base	formation
Radical_SAM	PF04055.16	gi|379005640|ref|YP_005261312.1|	-	2.5e-17	63.5	0.1	2e-16	60.5	0.0	2.3	2	1	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|379005640|ref|YP_005261312.1|	-	0.11	12.5	0.0	0.28	11.2	0.0	1.6	1	1	0	1	1	1	0	4Fe-4S	single	cluster	domain
NUDIX	PF00293.23	gi|379005641|ref|YP_005261313.1|	-	1.2e-20	73.4	1.0	1.6e-20	73.1	0.7	1.1	1	0	0	1	1	1	1	NUDIX	domain
Fer4_17	PF13534.1	gi|379005642|ref|YP_005261314.1|	-	0.00052	20.3	0.4	0.00063	20.0	0.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|379005642|ref|YP_005261314.1|	-	0.0027	17.4	0.2	0.0031	17.2	0.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|379005642|ref|YP_005261314.1|	-	0.0028	17.6	0.3	0.0028	17.6	0.2	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|379005642|ref|YP_005261314.1|	-	0.0076	16.6	0.3	0.0095	16.3	0.2	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|379005642|ref|YP_005261314.1|	-	0.012	15.2	0.2	0.014	15.0	0.1	1.1	1	0	0	1	1	1	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_18	PF13746.1	gi|379005642|ref|YP_005261314.1|	-	0.021	15.2	1.0	0.023	15.0	0.7	1.2	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|379005642|ref|YP_005261314.1|	-	0.028	14.6	0.8	0.056	13.7	0.6	1.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|379005642|ref|YP_005261314.1|	-	0.31	11.0	4.2	0.57	10.2	2.9	1.4	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|379005642|ref|YP_005261314.1|	-	0.36	10.5	3.4	0.71	9.5	2.4	1.4	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|379005642|ref|YP_005261314.1|	-	0.62	10.5	2.9	1.1	9.8	2.0	1.3	1	0	0	1	1	1	0	4Fe-4S	binding	domain
Antitoxin-MazE	PF04014.13	gi|379005643|ref|YP_005261315.1|	-	2.6e-13	49.3	1.1	2.7e-13	49.3	0.1	1.5	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
DUF3006	PF11213.3	gi|379005643|ref|YP_005261315.1|	-	0.0022	17.6	0.2	0.0036	17.0	0.1	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3006)
SH3_2	PF07653.12	gi|379005643|ref|YP_005261315.1|	-	0.1	12.1	0.0	0.11	11.9	0.0	1.3	1	0	0	1	1	1	0	Variant	SH3	domain
PIN	PF01850.16	gi|379005644|ref|YP_005261316.1|	-	4.9e-19	68.8	0.2	5.6e-19	68.6	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
PIN_4	PF13638.1	gi|379005644|ref|YP_005261316.1|	-	0.015	15.3	0.1	0.16	12.0	0.1	2.1	1	1	0	1	1	1	0	PIN	domain
PIN_3	PF13470.1	gi|379005644|ref|YP_005261316.1|	-	0.1	13.2	0.1	1.5	9.4	0.1	2.1	1	1	0	1	1	1	0	PIN	domain
BtpA	PF03437.10	gi|379005645|ref|YP_005261317.1|	-	0.00036	19.8	0.5	0.00038	19.8	0.3	1.0	1	0	0	1	1	1	1	BtpA	family
ABC2_membrane_3	PF12698.2	gi|379005646|ref|YP_005261318.1|	-	5.7e-10	38.7	17.4	1.5e-09	37.4	12.1	1.6	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|379005646|ref|YP_005261318.1|	-	1.4e-09	37.4	18.7	5.4e-07	28.9	9.9	2.3	2	0	0	2	2	2	2	ABC-2	type	transporter
DapB_N	PF01113.15	gi|379005646|ref|YP_005261318.1|	-	0.072	13.0	0.0	0.15	11.9	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
ABC_tran	PF00005.22	gi|379005647|ref|YP_005261319.1|	-	1.9e-24	86.5	0.0	2.5e-24	86.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005647|ref|YP_005261319.1|	-	1.3e-20	74.5	0.1	2.5e-12	47.3	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|379005647|ref|YP_005261319.1|	-	4.3e-07	29.3	0.0	0.005	15.9	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|379005647|ref|YP_005261319.1|	-	2.4e-06	27.9	0.0	3.6e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|379005647|ref|YP_005261319.1|	-	8.5e-05	21.8	0.0	0.005	16.0	0.0	2.1	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379005647|ref|YP_005261319.1|	-	0.0003	20.2	0.1	0.00056	19.3	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.1	gi|379005647|ref|YP_005261319.1|	-	0.00066	19.5	0.0	0.0036	17.1	0.0	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379005647|ref|YP_005261319.1|	-	0.00093	19.3	0.2	0.0098	16.0	0.1	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|379005647|ref|YP_005261319.1|	-	0.007	15.7	0.8	0.018	14.4	0.2	2.0	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379005647|ref|YP_005261319.1|	-	0.009	16.0	0.7	0.022	14.7	0.5	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.14	gi|379005647|ref|YP_005261319.1|	-	0.011	15.2	0.1	0.019	14.4	0.1	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF258	PF03193.11	gi|379005647|ref|YP_005261319.1|	-	0.016	14.4	0.0	0.025	13.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|379005647|ref|YP_005261319.1|	-	0.02	14.6	0.0	0.036	13.7	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_28	PF13521.1	gi|379005647|ref|YP_005261319.1|	-	0.02	14.8	0.0	0.031	14.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF2379	PF09543.5	gi|379005647|ref|YP_005261319.1|	-	0.022	14.7	0.0	0.048	13.6	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2379)
AAA_10	PF12846.2	gi|379005647|ref|YP_005261319.1|	-	0.029	13.8	0.0	0.32	10.3	0.0	2.0	1	1	1	2	2	2	0	AAA-like	domain
Zeta_toxin	PF06414.7	gi|379005647|ref|YP_005261319.1|	-	0.074	12.1	0.0	0.13	11.3	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_19	PF13245.1	gi|379005647|ref|YP_005261319.1|	-	0.087	12.5	0.1	0.2	11.4	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
IstB_IS21	PF01695.12	gi|379005647|ref|YP_005261319.1|	-	0.14	11.5	0.1	1.1	8.6	0.0	2.0	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NUDIX	PF00293.23	gi|379005648|ref|YP_005261320.1|	-	2.9e-17	62.5	0.1	3.5e-17	62.2	0.1	1.1	1	0	0	1	1	1	1	NUDIX	domain
V4R	PF02830.13	gi|379005649|ref|YP_005261321.1|	-	0.063	13.1	0.1	0.19	11.6	0.0	1.8	2	0	0	2	2	2	0	V4R	domain
DUF1435	PF07256.7	gi|379005649|ref|YP_005261321.1|	-	1.2	9.1	5.0	0.28	11.2	0.4	2.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1435)
Myc_target_1	PF15179.1	gi|379005649|ref|YP_005261321.1|	-	8	5.9	5.5	18	4.8	2.4	2.2	2	1	0	2	2	2	0	Myc	target	protein	1
AMP-binding	PF00501.23	gi|379005650|ref|YP_005261322.1|	-	3.6e-83	279.2	0.0	4.4e-83	278.9	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|379005650|ref|YP_005261322.1|	-	7.6e-19	68.4	0.1	1.9e-18	67.1	0.1	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Methyltransf_26	PF13659.1	gi|379005651|ref|YP_005261323.1|	-	1.5e-14	53.9	0.7	2.8e-14	53.1	0.5	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|379005651|ref|YP_005261323.1|	-	1e-12	47.9	0.0	1.2e-12	47.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|379005651|ref|YP_005261323.1|	-	3e-12	46.2	0.0	4.3e-12	45.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|379005651|ref|YP_005261323.1|	-	8.2e-11	42.4	0.0	1e-10	42.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|379005651|ref|YP_005261323.1|	-	2.8e-08	34.0	0.1	7.3e-08	32.6	0.1	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|379005651|ref|YP_005261323.1|	-	5.6e-08	33.1	0.1	1.3e-07	32.0	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|379005651|ref|YP_005261323.1|	-	8.8e-08	31.9	0.0	1.3e-07	31.4	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
PrmA	PF06325.8	gi|379005651|ref|YP_005261323.1|	-	9.5e-08	31.5	0.3	1.3e-07	31.0	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Ubie_methyltran	PF01209.13	gi|379005651|ref|YP_005261323.1|	-	3.1e-06	26.4	0.1	5.3e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Cons_hypoth95	PF03602.10	gi|379005651|ref|YP_005261323.1|	-	1.3e-05	24.6	0.0	1.7e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
Methyltransf_32	PF13679.1	gi|379005651|ref|YP_005261323.1|	-	9.4e-05	22.1	0.0	0.00018	21.2	0.0	1.5	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|379005651|ref|YP_005261323.1|	-	0.00033	21.0	0.0	0.00048	20.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_4	PF02390.12	gi|379005651|ref|YP_005261323.1|	-	0.0011	18.0	0.2	0.0038	16.3	0.0	1.8	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_23	PF13489.1	gi|379005651|ref|YP_005261323.1|	-	0.006	16.3	0.0	0.007	16.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|379005651|ref|YP_005261323.1|	-	0.017	15.1	0.0	0.02	14.8	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
Methyltransf_16	PF10294.4	gi|379005651|ref|YP_005261323.1|	-	0.022	14.2	0.7	2.1	7.7	0.1	2.8	2	1	0	2	2	2	0	Putative	methyltransferase
TehB	PF03848.9	gi|379005651|ref|YP_005261323.1|	-	0.061	12.4	0.0	0.085	12.0	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
CmcI	PF04989.7	gi|379005651|ref|YP_005261323.1|	-	0.096	11.9	0.0	0.14	11.4	0.0	1.2	1	0	0	1	1	1	0	Cephalosporin	hydroxylase
Methyltransf_15	PF09445.5	gi|379005651|ref|YP_005261323.1|	-	0.11	12.0	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
NodS	PF05401.6	gi|379005651|ref|YP_005261323.1|	-	0.12	11.8	0.1	0.19	11.0	0.1	1.3	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
CMAS	PF02353.15	gi|379005651|ref|YP_005261323.1|	-	0.13	11.3	0.1	0.37	9.8	0.0	1.6	2	0	0	2	2	2	0	Mycolic	acid	cyclopropane	synthetase
Band_7	PF01145.20	gi|379005652|ref|YP_005261324.1|	-	3.3e-25	89.0	6.4	3.3e-25	89.0	4.4	1.8	1	1	1	2	2	2	1	SPFH	domain	/	Band	7	family
Pilin	PF00114.14	gi|379005652|ref|YP_005261324.1|	-	0.02	15.6	2.1	0.021	15.5	0.3	1.9	2	0	0	2	2	2	0	Pilin	(bacterial	filament)
DUF3995	PF13160.1	gi|379005652|ref|YP_005261324.1|	-	2.4	8.2	8.3	0.14	12.2	1.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3995)
RuvB_C	PF05491.8	gi|379005653|ref|YP_005261325.1|	-	0.00034	20.1	0.1	0.00055	19.5	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
MarR_2	PF12802.2	gi|379005653|ref|YP_005261325.1|	-	0.00062	19.3	0.0	0.00098	18.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|379005653|ref|YP_005261325.1|	-	0.0018	17.9	0.4	0.0025	17.4	0.3	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|379005653|ref|YP_005261325.1|	-	0.0032	17.5	0.0	0.0044	17.0	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
FeoC	PF09012.5	gi|379005653|ref|YP_005261325.1|	-	0.02	14.5	0.0	0.033	13.8	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF2250	PF10007.4	gi|379005653|ref|YP_005261325.1|	-	0.039	13.8	0.0	0.053	13.4	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_27	PF13463.1	gi|379005653|ref|YP_005261325.1|	-	0.082	13.2	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|379005653|ref|YP_005261325.1|	-	0.086	12.5	0.0	0.13	11.9	0.0	1.2	1	0	0	1	1	1	0	MarR	family
DUF454	PF04304.8	gi|379005653|ref|YP_005261325.1|	-	0.21	11.6	2.4	0.35	10.9	1.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF454)
Peptidase_S24	PF00717.18	gi|379005654|ref|YP_005261326.1|	-	5.6e-07	29.1	0.0	8.9e-07	28.4	0.0	1.3	1	0	0	1	1	1	1	Peptidase	S24-like
Sugar_tr	PF00083.19	gi|379005655|ref|YP_005261327.1|	-	2.6e-22	79.0	24.5	1.4e-21	76.6	16.9	2.0	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|379005655|ref|YP_005261327.1|	-	1.4e-20	73.3	46.3	1.4e-20	73.3	32.1	1.4	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
SAICAR_synt	PF01259.13	gi|379005656|ref|YP_005261328.1|	-	3.7e-40	137.5	0.0	4.6e-40	137.2	0.0	1.1	1	0	0	1	1	1	1	SAICAR	synthetase
Formyl_trans_N	PF00551.14	gi|379005657|ref|YP_005261329.1|	-	1e-28	100.1	0.0	1.5e-28	99.5	0.0	1.3	1	0	0	1	1	1	1	Formyl	transferase
THF_DHG_CYH_C	PF02882.14	gi|379005658|ref|YP_005261330.1|	-	4e-41	139.7	0.0	6.3e-41	139.1	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
THF_DHG_CYH	PF00763.18	gi|379005658|ref|YP_005261330.1|	-	1.1e-19	70.5	0.0	1.6e-19	70.0	0.0	1.3	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	catalytic	domain
AIRS_C	PF02769.17	gi|379005659|ref|YP_005261331.1|	-	4.7e-19	68.9	0.0	8e-19	68.1	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|379005659|ref|YP_005261331.1|	-	6.2e-11	42.3	0.4	1.4e-10	41.2	0.3	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
Pribosyltran	PF00156.22	gi|379005660|ref|YP_005261332.1|	-	1.4e-17	63.5	2.6	2.3e-17	62.8	1.8	1.3	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GARS_A	PF01071.14	gi|379005661|ref|YP_005261333.1|	-	2.6e-35	121.7	0.0	4.2e-35	121.0	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|379005661|ref|YP_005261333.1|	-	1.6e-23	83.0	0.0	3.8e-23	81.8	0.0	1.6	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.11	gi|379005661|ref|YP_005261333.1|	-	4.8e-13	49.1	0.2	1.9e-12	47.2	0.0	2.1	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|379005661|ref|YP_005261333.1|	-	1.2e-11	44.6	0.1	2.2e-10	40.5	0.0	2.6	2	1	1	3	3	3	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|379005661|ref|YP_005261333.1|	-	5.6e-05	22.0	0.0	0.00013	20.8	0.0	1.6	2	0	0	2	2	2	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|379005661|ref|YP_005261333.1|	-	0.0095	15.2	0.1	0.016	14.5	0.1	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_3	PF02655.9	gi|379005661|ref|YP_005261333.1|	-	0.012	15.4	0.0	0.028	14.2	0.0	1.6	1	0	0	1	1	1	0	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|379005661|ref|YP_005261333.1|	-	0.016	14.3	0.0	0.028	13.5	0.0	1.3	1	0	0	1	1	1	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
PaREP1	PF05942.6	gi|379005662|ref|YP_005261334.1|	-	3.8e-06	26.7	0.1	3.8e-06	26.7	0.1	1.0	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
TENA_THI-4	PF03070.11	gi|379005663|ref|YP_005261335.1|	-	5.9e-10	39.2	0.6	1e-09	38.4	0.4	1.4	1	1	0	1	1	1	1	TENA/THI-4/PQQC	family
TENA_THI-4	PF03070.11	gi|379005664|ref|YP_005261336.1|	-	3.6e-48	164.1	1.5	4.2e-48	163.8	1.0	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Big_3_4	PF13754.1	gi|379005665|ref|YP_005261337.1|	-	0.0059	16.9	3.7	0.0076	16.5	0.2	2.7	3	0	0	3	3	3	1	Bacterial	Ig-like	domain	(group	3)
Big_3_2	PF12245.3	gi|379005665|ref|YP_005261337.1|	-	0.08	12.5	0.1	0.22	11.0	0.1	1.7	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
PurS	PF02700.9	gi|379005667|ref|YP_005261339.1|	-	3.1e-13	49.4	0.0	3.6e-13	49.2	0.0	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
GATase_5	PF13507.1	gi|379005668|ref|YP_005261340.1|	-	1e-35	122.9	0.0	3.6e-26	91.6	0.0	2.1	1	1	1	2	2	2	2	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.19	gi|379005668|ref|YP_005261340.1|	-	5.7e-09	35.5	0.1	8.7e-09	34.9	0.0	1.2	1	0	0	1	1	1	1	DJ-1/PfpI	family
GATase	PF00117.23	gi|379005668|ref|YP_005261340.1|	-	6.6e-08	32.2	0.0	7e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|379005668|ref|YP_005261340.1|	-	8.2e-08	31.9	0.0	1.9e-07	30.8	0.0	1.5	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_C26	PF07722.8	gi|379005668|ref|YP_005261340.1|	-	0.00026	20.4	0.0	0.00039	19.9	0.0	1.2	1	0	0	1	1	1	1	Peptidase	C26
DUF4066	PF13278.1	gi|379005668|ref|YP_005261340.1|	-	0.011	15.0	0.0	0.016	14.4	0.0	1.2	1	0	0	1	1	1	0	Putative	amidotransferase
CinA	PF02464.12	gi|379005669|ref|YP_005261341.1|	-	0.061	12.7	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	Competence-damaged	protein
GP11	PF08677.5	gi|379005669|ref|YP_005261341.1|	-	0.089	11.9	1.0	0.19	10.8	0.1	1.9	2	0	0	2	2	2	0	GP11	baseplate	wedge	protein
AIRS	PF00586.19	gi|379005673|ref|YP_005261345.1|	-	3.1e-38	129.8	1.8	5.6e-23	81.0	0.0	2.5	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|379005673|ref|YP_005261345.1|	-	7.3e-37	126.7	1.5	4.1e-23	82.0	0.3	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
Propep_M14	PF02244.11	gi|379005673|ref|YP_005261345.1|	-	0.085	12.5	0.0	0.18	11.5	0.0	1.4	1	0	0	1	1	1	0	Carboxypeptidase	activation	peptide
Pribosyltran	PF00156.22	gi|379005674|ref|YP_005261346.1|	-	2e-12	46.9	0.4	3.6e-12	46.0	0.3	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_6	PF13522.1	gi|379005674|ref|YP_005261346.1|	-	4.8e-12	45.9	0.0	1e-11	44.9	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|379005674|ref|YP_005261346.1|	-	4.6e-10	39.3	0.0	1.2e-09	37.9	0.0	1.6	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|379005674|ref|YP_005261346.1|	-	0.00012	20.8	0.0	0.023	13.4	0.0	2.2	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
ATP-grasp	PF02222.17	gi|379005676|ref|YP_005261348.1|	-	1.1e-39	135.5	0.0	1.7e-39	134.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|379005676|ref|YP_005261348.1|	-	2.5e-06	27.3	0.4	7.3e-06	25.8	0.3	1.8	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|379005676|ref|YP_005261348.1|	-	0.04	13.1	0.0	0.067	12.4	0.0	1.3	1	0	0	1	1	1	0	ATP-grasp	domain
Glyoxalase_2	PF12681.2	gi|379005676|ref|YP_005261348.1|	-	0.11	13.1	0.0	1.2	9.7	0.0	2.4	2	0	0	2	2	2	0	Glyoxalase-like	domain
AIRC	PF00731.15	gi|379005677|ref|YP_005261349.1|	-	1.5e-64	215.7	0.5	1.7e-64	215.6	0.3	1.0	1	0	0	1	1	1	1	AIR	carboxylase
STT3	PF02516.9	gi|379005678|ref|YP_005261350.1|	-	0.013	14.5	5.5	0.015	14.3	3.8	1.0	1	0	0	1	1	1	0	Oligosaccharyl	transferase	STT3	subunit
PMP22_Claudin	PF00822.15	gi|379005678|ref|YP_005261350.1|	-	0.046	13.3	2.1	0.061	12.9	1.5	1.1	1	0	0	1	1	1	0	PMP-22/EMP/MP20/Claudin	family
Mem_trans	PF03547.13	gi|379005678|ref|YP_005261350.1|	-	0.62	8.2	6.5	0.74	8.0	4.5	1.1	1	0	0	1	1	1	0	Membrane	transport	protein
ABC_tran	PF00005.22	gi|379005679|ref|YP_005261351.1|	-	1.1e-28	100.2	0.0	1.9e-28	99.4	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005679|ref|YP_005261351.1|	-	1e-13	51.9	0.0	3.6e-08	33.7	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|379005679|ref|YP_005261351.1|	-	0.0017	17.4	0.0	0.16	11.0	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|379005679|ref|YP_005261351.1|	-	0.0096	16.2	0.0	0.015	15.6	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
DUF4162	PF13732.1	gi|379005679|ref|YP_005261351.1|	-	0.01	16.3	0.0	0.032	14.7	0.0	1.9	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.1	gi|379005679|ref|YP_005261351.1|	-	0.016	14.6	0.2	0.034	13.6	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
SRP54	PF00448.17	gi|379005679|ref|YP_005261351.1|	-	0.017	14.5	1.0	0.062	12.7	0.1	2.0	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
MutS_V	PF00488.16	gi|379005679|ref|YP_005261351.1|	-	0.045	13.1	0.0	0.47	9.8	0.0	2.1	2	0	0	2	2	2	0	MutS	domain	V
AAA	PF00004.24	gi|379005679|ref|YP_005261351.1|	-	0.054	13.7	1.1	0.7	10.0	0.7	2.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
IMS	PF00817.15	gi|379005679|ref|YP_005261351.1|	-	0.091	12.5	0.1	0.22	11.3	0.1	1.6	1	1	0	1	1	1	0	impB/mucB/samB	family
AAA_16	PF13191.1	gi|379005679|ref|YP_005261351.1|	-	0.11	12.4	0.0	0.2	11.6	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|379005679|ref|YP_005261351.1|	-	0.21	11.3	1.0	0.88	9.3	0.3	2.2	2	0	0	2	2	2	0	Part	of	AAA	domain
ABC2_membrane	PF01061.19	gi|379005680|ref|YP_005261352.1|	-	3.3e-33	114.6	15.5	3.3e-33	114.6	10.8	1.6	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|379005680|ref|YP_005261352.1|	-	4.5e-16	58.8	14.6	4.5e-16	58.8	10.1	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|379005680|ref|YP_005261352.1|	-	3.8e-12	45.8	17.1	4.8e-12	45.5	11.9	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|379005680|ref|YP_005261352.1|	-	2.1e-09	36.6	16.5	2.9e-09	36.1	11.4	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
Methyltransf_23	PF13489.1	gi|379005681|ref|YP_005261353.1|	-	2.3e-06	27.4	0.0	3e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Thioredoxin_3	PF13192.1	gi|379005683|ref|YP_005261355.1|	-	0.066	13.0	0.1	0.32	10.8	0.0	1.9	2	0	0	2	2	2	0	Thioredoxin	domain
Sod_Fe_C	PF02777.13	gi|379005684|ref|YP_005261356.1|	-	8.4e-39	131.6	1.0	1.2e-38	131.1	0.7	1.2	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|379005684|ref|YP_005261356.1|	-	2.1e-31	107.9	3.0	3.1e-31	107.4	0.8	2.0	2	0	0	2	2	2	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
HEPN	PF05168.9	gi|379005685|ref|YP_005261357.1|	-	6.9e-07	29.1	0.0	1.1e-06	28.5	0.0	1.4	1	1	0	1	1	1	1	HEPN	domain
DUF3624	PF12292.3	gi|379005685|ref|YP_005261357.1|	-	0.16	12.3	0.5	0.27	11.6	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3624)
Pyr_redox_2	PF07992.9	gi|379005687|ref|YP_005261359.1|	-	9.2e-08	32.2	0.0	1.3e-05	25.1	0.0	3.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|379005687|ref|YP_005261359.1|	-	9.8e-05	21.4	0.1	0.00024	20.1	0.1	1.6	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|379005687|ref|YP_005261359.1|	-	0.00021	21.2	0.1	0.00041	20.3	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|379005687|ref|YP_005261359.1|	-	0.0011	19.0	0.1	0.0025	17.9	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|379005687|ref|YP_005261359.1|	-	0.0025	17.6	0.2	0.062	13.0	0.2	2.5	2	0	0	2	2	2	1	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|379005687|ref|YP_005261359.1|	-	0.0069	15.3	0.0	0.0098	14.8	0.0	1.2	1	0	0	1	1	1	1	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|379005687|ref|YP_005261359.1|	-	0.028	12.9	0.1	0.042	12.3	0.0	1.3	1	0	0	1	1	1	0	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|379005687|ref|YP_005261359.1|	-	0.032	13.0	0.0	0.041	12.7	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox	PF00070.22	gi|379005687|ref|YP_005261359.1|	-	0.037	14.4	0.2	0.09	13.1	0.1	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|379005687|ref|YP_005261359.1|	-	0.039	12.8	0.0	0.051	12.4	0.0	1.2	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|379005687|ref|YP_005261359.1|	-	0.12	12.6	0.0	0.23	11.7	0.0	1.5	1	0	0	1	1	1	0	Putative	NAD(P)-binding
Trp_halogenase	PF04820.9	gi|379005687|ref|YP_005261359.1|	-	0.15	10.6	0.1	0.21	10.1	0.1	1.2	1	0	0	1	1	1	0	Tryptophan	halogenase
FAD_binding_3	PF01494.14	gi|379005687|ref|YP_005261359.1|	-	0.15	11.1	0.1	0.68	8.9	0.1	1.8	2	0	0	2	2	2	0	FAD	binding	domain
Trm112p	PF03966.11	gi|379005688|ref|YP_005261360.1|	-	2.4e-19	69.4	1.4	4.5e-19	68.5	1.0	1.5	1	0	0	1	1	1	1	Trm112p-like	protein
zf-ribbon_3	PF13248.1	gi|379005688|ref|YP_005261360.1|	-	0.0023	17.0	0.6	0.0023	17.0	0.4	2.0	3	0	0	3	3	3	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|379005688|ref|YP_005261360.1|	-	0.0061	16.0	0.7	0.0061	16.0	0.5	2.1	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF164	PF02591.10	gi|379005688|ref|YP_005261360.1|	-	0.098	12.4	1.5	0.4	10.5	1.0	2.0	1	1	0	1	1	1	0	Putative	zinc	ribbon	domain
GcpE	PF04551.9	gi|379005688|ref|YP_005261360.1|	-	0.13	11.0	0.0	0.18	10.6	0.0	1.1	1	0	0	1	1	1	0	GcpE	protein
DZR	PF12773.2	gi|379005688|ref|YP_005261360.1|	-	0.19	11.6	3.9	0.53	10.1	2.7	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-H2C2_2	PF13465.1	gi|379005688|ref|YP_005261360.1|	-	2.9	8.3	11.5	2.3	8.6	0.8	3.4	3	0	0	3	3	3	0	Zinc-finger	double	domain
NTP_transf_2	PF01909.18	gi|379005689|ref|YP_005261361.1|	-	5.1e-10	39.5	0.0	6.7e-10	39.1	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
PAC2	PF09754.4	gi|379005689|ref|YP_005261361.1|	-	0.034	13.9	0.0	0.04	13.7	0.0	1.1	1	0	0	1	1	1	0	PAC2	family
Nuc-transf	PF10127.4	gi|379005689|ref|YP_005261361.1|	-	0.067	12.5	0.0	0.078	12.3	0.0	1.2	1	0	0	1	1	1	0	Predicted	nucleotidyltransferase
HEPN	PF05168.9	gi|379005690|ref|YP_005261362.1|	-	3.9e-32	110.6	0.0	4.3e-32	110.4	0.0	1.0	1	0	0	1	1	1	1	HEPN	domain
PaREP1	PF05942.6	gi|379005690|ref|YP_005261362.1|	-	0.049	13.4	0.1	0.068	13.0	0.1	1.4	1	1	0	1	1	1	0	Archaeal	PaREP1/PaREP8	family
MIT	PF04212.13	gi|379005690|ref|YP_005261362.1|	-	0.058	13.2	0.0	0.12	12.3	0.0	1.4	1	1	0	1	1	1	0	MIT	(microtubule	interacting	and	transport)	domain
TGT	PF01702.13	gi|379005691|ref|YP_005261363.1|	-	0.083	12.1	0.0	0.11	11.7	0.0	1.2	1	0	0	1	1	1	0	Queuine	tRNA-ribosyltransferase
Amidohydro_1	PF01979.15	gi|379005693|ref|YP_005261365.1|	-	0.0072	16.0	0.1	0.33	10.5	0.0	2.2	1	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|379005693|ref|YP_005261365.1|	-	0.011	15.5	1.2	0.021	14.6	0.2	1.9	2	0	0	2	2	2	0	Amidohydrolase
Pyr_redox	PF00070.22	gi|379005695|ref|YP_005261367.1|	-	0.059	13.7	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AAA_assoc_C	PF09821.4	gi|379005695|ref|YP_005261367.1|	-	0.12	12.6	0.1	0.18	12.0	0.0	1.3	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
TrmB	PF01978.14	gi|379005696|ref|YP_005261368.1|	-	2.7e-07	30.1	0.2	4.6e-07	29.4	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|379005696|ref|YP_005261368.1|	-	6.6e-05	22.2	0.1	9.6e-05	21.6	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|379005696|ref|YP_005261368.1|	-	0.00027	20.6	0.1	0.00039	20.1	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TFIIE_alpha	PF02002.12	gi|379005696|ref|YP_005261368.1|	-	0.00036	19.9	0.2	0.00075	18.9	0.1	1.5	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Penicillinase_R	PF03965.11	gi|379005696|ref|YP_005261368.1|	-	0.00085	19.4	0.1	0.0014	18.7	0.0	1.3	1	0	0	1	1	1	1	Penicillinase	repressor
HTH_5	PF01022.15	gi|379005696|ref|YP_005261368.1|	-	0.0011	18.5	0.1	0.002	17.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_17	PF12728.2	gi|379005696|ref|YP_005261368.1|	-	0.0025	18.0	1.9	0.0044	17.2	0.2	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|379005696|ref|YP_005261368.1|	-	0.0042	16.5	0.1	0.0073	15.8	0.0	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_23	PF13384.1	gi|379005696|ref|YP_005261368.1|	-	0.0046	16.5	0.0	0.011	15.3	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_9	PF08221.6	gi|379005696|ref|YP_005261368.1|	-	0.0047	16.7	0.1	0.008	16.0	0.1	1.3	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
MarR	PF01047.17	gi|379005696|ref|YP_005261368.1|	-	0.0051	16.5	0.1	0.0087	15.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|379005696|ref|YP_005261368.1|	-	0.0069	15.9	0.2	0.011	15.2	0.2	1.3	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|379005696|ref|YP_005261368.1|	-	0.027	14.2	0.0	0.049	13.4	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|379005696|ref|YP_005261368.1|	-	0.057	13.0	0.1	0.088	12.4	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MarR_2	PF12802.2	gi|379005696|ref|YP_005261368.1|	-	0.068	12.8	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	MarR	family
HTH_IclR	PF09339.5	gi|379005696|ref|YP_005261368.1|	-	0.083	12.4	0.1	0.13	11.9	0.1	1.2	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_32	PF13565.1	gi|379005696|ref|YP_005261368.1|	-	0.086	13.6	0.2	0.17	12.7	0.1	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
Rrf2	PF02082.15	gi|379005696|ref|YP_005261368.1|	-	0.15	12.2	0.0	0.23	11.5	0.0	1.3	1	0	0	1	1	1	0	Transcriptional	regulator
ResIII	PF04851.10	gi|379005697|ref|YP_005261369.1|	-	3.3e-18	66.1	0.0	1.5e-15	57.5	0.0	2.8	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|379005697|ref|YP_005261369.1|	-	3.4e-15	55.6	0.3	7.6e-15	54.5	0.2	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|379005697|ref|YP_005261369.1|	-	1e-07	31.6	0.0	6.3e-07	29.0	0.0	2.2	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.18	gi|379005697|ref|YP_005261369.1|	-	1.5e-06	27.2	0.0	0.00056	18.8	0.0	2.9	1	1	1	2	2	2	2	SNF2	family	N-terminal	domain
Pribosyltran_N	PF13793.1	gi|379005697|ref|YP_005261369.1|	-	0.052	13.2	0.1	0.14	11.8	0.0	1.7	1	0	0	1	1	1	0	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
AAA_22	PF13401.1	gi|379005697|ref|YP_005261369.1|	-	0.068	13.3	0.0	0.21	11.7	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|379005699|ref|YP_005261371.1|	-	3.5e-27	95.3	0.0	4.5e-27	95.0	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005699|ref|YP_005261371.1|	-	1.2e-11	45.1	0.0	6e-08	32.9	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ArgK	PF03308.11	gi|379005699|ref|YP_005261371.1|	-	0.0026	16.5	0.0	0.0047	15.7	0.0	1.3	1	0	0	1	1	1	1	ArgK	protein
SMC_N	PF02463.14	gi|379005699|ref|YP_005261371.1|	-	0.0029	16.8	0.0	0.93	8.6	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|379005699|ref|YP_005261371.1|	-	0.0034	16.8	0.0	0.0065	15.9	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|379005699|ref|YP_005261371.1|	-	0.0091	16.0	0.4	0.091	12.7	0.3	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_28	PF13521.1	gi|379005699|ref|YP_005261371.1|	-	0.0095	15.9	0.1	1	9.3	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|379005699|ref|YP_005261371.1|	-	0.028	14.6	0.0	0.091	12.9	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|379005699|ref|YP_005261371.1|	-	0.049	13.5	0.0	0.76	9.7	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_10	PF12846.2	gi|379005699|ref|YP_005261371.1|	-	0.064	12.6	0.0	0.076	12.4	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
AAA_23	PF13476.1	gi|379005699|ref|YP_005261371.1|	-	0.075	13.3	0.0	0.12	12.7	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_17	PF13207.1	gi|379005699|ref|YP_005261371.1|	-	0.076	13.8	0.0	0.15	12.9	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|379005699|ref|YP_005261371.1|	-	0.077	12.5	0.1	0.22	11.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
MobB	PF03205.9	gi|379005699|ref|YP_005261371.1|	-	0.098	12.3	0.1	0.29	10.8	0.0	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Gtr1_RagA	PF04670.7	gi|379005699|ref|YP_005261371.1|	-	0.11	11.5	0.0	0.17	11.0	0.0	1.2	1	0	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
UPF0079	PF02367.12	gi|379005699|ref|YP_005261371.1|	-	0.12	12.0	0.0	0.21	11.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
SRP54	PF00448.17	gi|379005699|ref|YP_005261371.1|	-	0.14	11.5	0.1	0.32	10.4	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
KAP_NTPase	PF07693.9	gi|379005699|ref|YP_005261371.1|	-	0.17	10.8	0.0	0.4	9.6	0.0	1.5	2	0	0	2	2	2	0	KAP	family	P-loop	domain
Rad17	PF03215.10	gi|379005699|ref|YP_005261371.1|	-	0.22	10.1	0.0	0.28	9.8	0.0	1.1	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
ABC2_membrane	PF01061.19	gi|379005700|ref|YP_005261372.1|	-	8.4e-05	21.8	18.5	0.00013	21.1	12.8	1.3	1	0	0	1	1	1	1	ABC-2	type	transporter
QueF	PF14489.1	gi|379005701|ref|YP_005261373.1|	-	2.9e-07	30.3	0.0	3.6e-07	30.0	0.0	1.2	1	0	0	1	1	1	1	QueF-like	protein
GTP_cyclohydroI	PF01227.17	gi|379005701|ref|YP_005261373.1|	-	0.00013	21.2	0.0	0.00016	21.0	0.0	1.1	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
Alpha-amylase	PF00128.19	gi|379005702|ref|YP_005261374.1|	-	5.3e-29	101.6	0.0	4.2e-28	98.6	0.0	2.2	1	1	0	1	1	1	1	Alpha	amylase,	catalytic	domain
KaiC	PF06745.8	gi|379005703|ref|YP_005261375.1|	-	1.1e-16	60.6	0.0	1.3e-15	57.1	0.0	2.1	1	1	0	1	1	1	1	KaiC
AAA_25	PF13481.1	gi|379005703|ref|YP_005261375.1|	-	2.2e-11	43.5	0.1	6.7e-10	38.6	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
GvpD	PF07088.6	gi|379005703|ref|YP_005261375.1|	-	3.4e-05	22.3	0.0	0.0023	16.3	0.0	2.1	1	1	0	1	1	1	1	GvpD	gas	vesicle	protein
AAA_22	PF13401.1	gi|379005703|ref|YP_005261375.1|	-	6.9e-05	22.9	0.0	0.00028	21.0	0.0	2.0	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|379005703|ref|YP_005261375.1|	-	0.00019	21.7	0.0	0.00048	20.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379005703|ref|YP_005261375.1|	-	0.00028	20.4	0.1	0.0011	18.4	0.0	2.1	3	1	0	3	3	3	1	AAA-like	domain
AAA	PF00004.24	gi|379005703|ref|YP_005261375.1|	-	0.00046	20.4	0.0	0.0024	18.0	0.0	2.1	1	1	1	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Arch_ATPase	PF01637.13	gi|379005703|ref|YP_005261375.1|	-	0.00047	19.9	0.0	0.0036	17.0	0.0	2.5	2	1	0	2	2	2	1	Archaeal	ATPase
IstB_IS21	PF01695.12	gi|379005703|ref|YP_005261375.1|	-	0.00052	19.4	0.0	0.0011	18.3	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_17	PF13207.1	gi|379005703|ref|YP_005261375.1|	-	0.00068	20.4	0.2	0.004	17.9	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|379005703|ref|YP_005261375.1|	-	0.0032	16.9	0.0	0.51	9.7	0.0	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_24	PF13479.1	gi|379005703|ref|YP_005261375.1|	-	0.011	15.3	0.3	0.049	13.2	0.2	2.1	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|379005703|ref|YP_005261375.1|	-	0.012	15.5	0.0	0.035	14.0	0.0	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.1	gi|379005703|ref|YP_005261375.1|	-	0.013	15.4	0.1	0.066	13.1	0.0	2.2	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA_19	PF13245.1	gi|379005703|ref|YP_005261375.1|	-	0.031	14.0	0.0	0.14	11.9	0.0	2.1	2	0	0	2	2	2	0	Part	of	AAA	domain
DnaB_C	PF03796.10	gi|379005703|ref|YP_005261375.1|	-	0.048	12.5	0.2	0.38	9.6	0.0	2.0	1	1	1	2	2	2	0	DnaB-like	helicase	C	terminal	domain
AAA_14	PF13173.1	gi|379005703|ref|YP_005261375.1|	-	0.057	13.3	0.0	0.28	11.0	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|379005703|ref|YP_005261375.1|	-	0.061	13.0	0.0	0.19	11.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MobB	PF03205.9	gi|379005703|ref|YP_005261375.1|	-	0.072	12.7	0.1	0.85	9.3	0.0	2.6	3	1	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NB-ARC	PF00931.17	gi|379005703|ref|YP_005261375.1|	-	0.077	11.8	0.0	0.1	11.4	0.0	1.2	1	0	0	1	1	1	0	NB-ARC	domain
AAA_31	PF13614.1	gi|379005703|ref|YP_005261375.1|	-	0.083	12.8	0.0	0.4	10.5	0.0	2.2	2	1	0	2	2	2	0	AAA	domain
Amidohydro_4	PF13147.1	gi|379005704|ref|YP_005261376.1|	-	6.1e-18	65.8	2.1	4.8e-10	39.9	0.2	2.1	2	0	0	2	2	2	2	Amidohydrolase
Amidohydro_1	PF01979.15	gi|379005704|ref|YP_005261376.1|	-	8.1e-13	48.7	0.0	2.8e-12	46.9	0.0	1.7	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|379005704|ref|YP_005261376.1|	-	1.6e-06	27.8	0.1	5.1e-06	26.2	0.0	1.8	2	0	0	2	2	2	1	Amidohydrolase
DHOase	PF12890.2	gi|379005704|ref|YP_005261376.1|	-	0.066	12.8	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Dihydro-orotase-like
RHH_1	PF01402.16	gi|379005705|ref|YP_005261377.1|	-	0.0053	16.5	0.0	0.014	15.3	0.0	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RepB-RCR_reg	PF10723.4	gi|379005705|ref|YP_005261377.1|	-	0.06	13.0	0.0	0.21	11.3	0.0	1.8	2	0	0	2	2	2	0	Replication	regulatory	protein	RepB
ABC_tran	PF00005.22	gi|379005706|ref|YP_005261378.1|	-	1.2e-35	122.7	0.0	1.9e-35	122.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005706|ref|YP_005261378.1|	-	8e-13	48.9	0.0	1e-06	28.9	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|379005706|ref|YP_005261378.1|	-	2e-05	24.0	0.0	3.9e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|379005706|ref|YP_005261378.1|	-	6.8e-05	23.6	0.0	0.00012	22.9	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|379005706|ref|YP_005261378.1|	-	0.00012	22.1	0.8	0.00047	20.1	0.6	2.0	1	1	0	1	1	1	1	AAA	ATPase	domain
SMC_N	PF02463.14	gi|379005706|ref|YP_005261378.1|	-	0.00044	19.5	0.0	0.42	9.8	0.0	2.2	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|379005706|ref|YP_005261378.1|	-	0.00052	19.1	0.0	0.011	14.7	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
MobB	PF03205.9	gi|379005706|ref|YP_005261378.1|	-	0.00075	19.2	0.0	0.0018	17.9	0.0	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_19	PF13245.1	gi|379005706|ref|YP_005261378.1|	-	0.0013	18.4	0.6	0.0041	16.8	0.0	2.1	3	0	0	3	3	3	1	Part	of	AAA	domain
AAA_10	PF12846.2	gi|379005706|ref|YP_005261378.1|	-	0.0081	15.6	0.0	0.017	14.5	0.0	1.5	1	0	0	1	1	1	1	AAA-like	domain
AAA_18	PF13238.1	gi|379005706|ref|YP_005261378.1|	-	0.009	16.3	0.1	0.021	15.1	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|379005706|ref|YP_005261378.1|	-	0.011	15.2	0.0	0.019	14.4	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_5	PF07728.9	gi|379005706|ref|YP_005261378.1|	-	0.012	15.3	0.0	0.064	12.9	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.1	gi|379005706|ref|YP_005261378.1|	-	0.012	15.4	0.0	0.03	14.1	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_30	PF13604.1	gi|379005706|ref|YP_005261378.1|	-	0.015	14.8	0.0	0.035	13.6	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
AAA_22	PF13401.1	gi|379005706|ref|YP_005261378.1|	-	0.02	15.0	0.0	0.045	13.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|379005706|ref|YP_005261378.1|	-	0.023	14.6	0.0	0.11	12.5	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|379005706|ref|YP_005261378.1|	-	0.026	13.7	0.0	0.041	13.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|379005706|ref|YP_005261378.1|	-	0.043	14.3	0.0	0.069	13.6	0.0	1.3	1	0	0	1	1	1	0	Miro-like	protein
NACHT	PF05729.7	gi|379005706|ref|YP_005261378.1|	-	0.05	13.2	0.0	0.084	12.5	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|379005706|ref|YP_005261378.1|	-	0.051	13.7	0.0	0.18	12.0	0.0	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SE	PF00437.15	gi|379005706|ref|YP_005261378.1|	-	0.064	12.1	0.0	0.1	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
Arch_ATPase	PF01637.13	gi|379005706|ref|YP_005261378.1|	-	0.067	12.8	0.0	0.096	12.3	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_25	PF13481.1	gi|379005706|ref|YP_005261378.1|	-	0.07	12.5	0.0	0.16	11.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|379005706|ref|YP_005261378.1|	-	0.099	12.9	0.0	0.14	12.4	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|379005706|ref|YP_005261378.1|	-	0.13	12.4	0.0	0.39	10.8	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
SBP_bac_6	PF13343.1	gi|379005708|ref|YP_005261380.1|	-	5.3e-22	78.3	0.0	1.1e-21	77.2	0.0	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|379005708|ref|YP_005261380.1|	-	2.2e-19	70.2	0.0	3.8e-19	69.4	0.0	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|379005708|ref|YP_005261380.1|	-	4.2e-14	52.9	0.1	8.3e-14	52.0	0.1	1.5	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|379005708|ref|YP_005261380.1|	-	7.6e-14	51.8	0.0	1.3e-13	51.1	0.0	1.3	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
GTP_EFTU	PF00009.22	gi|379005709|ref|YP_005261381.1|	-	1e-54	184.8	0.0	1.5e-54	184.2	0.0	1.3	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|379005709|ref|YP_005261381.1|	-	1.8e-33	114.6	0.1	6.8e-33	112.7	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.1	gi|379005709|ref|YP_005261381.1|	-	1.1e-22	79.6	0.1	2.2e-22	78.6	0.0	1.6	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.19	gi|379005709|ref|YP_005261381.1|	-	2.9e-19	68.7	0.0	7.4e-19	67.4	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.20	gi|379005709|ref|YP_005261381.1|	-	1.5e-15	57.0	0.3	3.7e-15	55.7	0.2	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	2
ThiC	PF01964.13	gi|379005710|ref|YP_005261382.1|	-	1e-165	551.3	0.0	1.2e-165	551.1	0.0	1.0	1	0	0	1	1	1	1	ThiC	family
ABC_tran	PF00005.22	gi|379005711|ref|YP_005261383.1|	-	1.2e-20	74.2	0.0	2.8e-20	73.0	0.0	1.6	1	1	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|379005711|ref|YP_005261383.1|	-	2.1e-14	54.2	0.1	1.6e-06	28.2	0.0	2.1	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|379005711|ref|YP_005261383.1|	-	1.4e-07	31.0	0.0	0.0027	16.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|379005711|ref|YP_005261383.1|	-	1.3e-06	27.8	0.0	0.026	13.5	0.0	2.0	2	0	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.7	gi|379005711|ref|YP_005261383.1|	-	8e-05	22.3	0.0	0.0001	22.0	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|379005711|ref|YP_005261383.1|	-	0.0001	22.4	0.1	0.00041	20.5	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|379005711|ref|YP_005261383.1|	-	0.00013	22.3	0.0	0.00021	21.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
SbcCD_C	PF13558.1	gi|379005711|ref|YP_005261383.1|	-	0.00017	21.4	0.0	0.0013	18.5	0.0	2.1	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|379005711|ref|YP_005261383.1|	-	0.00027	21.7	0.5	0.00055	20.7	0.4	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|379005711|ref|YP_005261383.1|	-	0.00065	19.5	0.1	0.0043	16.9	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|379005711|ref|YP_005261383.1|	-	0.0022	17.4	0.1	0.0056	16.1	0.0	1.6	2	0	0	2	2	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|379005711|ref|YP_005261383.1|	-	0.0025	17.5	0.1	0.0046	16.6	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|379005711|ref|YP_005261383.1|	-	0.0035	17.3	0.1	0.0052	16.7	0.1	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|379005711|ref|YP_005261383.1|	-	0.0045	17.2	0.2	0.0069	16.6	0.1	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|379005711|ref|YP_005261383.1|	-	0.0095	15.6	1.3	0.012	15.3	0.2	1.7	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_28	PF13521.1	gi|379005711|ref|YP_005261383.1|	-	0.013	15.4	0.1	0.043	13.7	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|379005711|ref|YP_005261383.1|	-	0.013	15.6	0.1	0.031	14.4	0.0	1.6	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|379005711|ref|YP_005261383.1|	-	0.016	14.9	0.1	0.046	13.4	0.0	1.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
AAA_10	PF12846.2	gi|379005711|ref|YP_005261383.1|	-	0.017	14.5	0.3	0.029	13.7	0.1	1.4	1	1	0	1	1	1	0	AAA-like	domain
AAA_30	PF13604.1	gi|379005711|ref|YP_005261383.1|	-	0.025	14.1	0.2	0.061	12.8	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|379005711|ref|YP_005261383.1|	-	0.03	14.2	0.1	0.39	10.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|379005711|ref|YP_005261383.1|	-	0.033	13.5	0.9	0.075	12.4	0.7	1.6	1	1	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|379005711|ref|YP_005261383.1|	-	0.037	13.1	0.2	0.28	10.3	0.1	1.9	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
NTPase_1	PF03266.10	gi|379005711|ref|YP_005261383.1|	-	0.047	13.3	0.0	0.88	9.2	0.0	2.1	2	0	0	2	2	2	0	NTPase
APH	PF01636.18	gi|379005711|ref|YP_005261383.1|	-	0.057	13.1	0.8	0.073	12.7	0.5	1.2	1	0	0	1	1	1	0	Phosphotransferase	enzyme	family
cobW	PF02492.14	gi|379005711|ref|YP_005261383.1|	-	0.06	12.7	0.0	0.084	12.3	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_13	PF13166.1	gi|379005711|ref|YP_005261383.1|	-	0.076	11.4	0.0	0.1	11.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|379005711|ref|YP_005261383.1|	-	0.077	12.1	0.0	0.12	11.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Arch_ATPase	PF01637.13	gi|379005711|ref|YP_005261383.1|	-	0.086	12.5	0.0	0.1	12.2	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
SRP54	PF00448.17	gi|379005711|ref|YP_005261383.1|	-	0.092	12.1	0.1	0.14	11.5	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
RNA_helicase	PF00910.17	gi|379005711|ref|YP_005261383.1|	-	0.13	12.3	0.0	0.2	11.8	0.0	1.3	1	0	0	1	1	1	0	RNA	helicase
ABC_ATPase	PF09818.4	gi|379005711|ref|YP_005261383.1|	-	0.2	10.1	0.6	0.88	8.0	0.1	1.9	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
FecCD	PF01032.13	gi|379005712|ref|YP_005261384.1|	-	4.3e-62	209.7	31.6	5.3e-62	209.4	21.9	1.1	1	0	0	1	1	1	1	FecCD	transport	family
Peripla_BP_2	PF01497.13	gi|379005713|ref|YP_005261385.1|	-	3.5e-25	88.5	0.0	6.5e-25	87.6	0.0	1.4	1	0	0	1	1	1	1	Periplasmic	binding	protein
Baculo_PEP_C	PF04513.7	gi|379005713|ref|YP_005261385.1|	-	0.0022	17.8	3.9	0.0034	17.2	2.0	1.7	2	0	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
IFT57	PF10498.4	gi|379005713|ref|YP_005261385.1|	-	0.014	14.1	0.4	0.021	13.5	0.3	1.1	1	0	0	1	1	1	0	Intra-flagellar	transport	protein	57
DUF1664	PF07889.7	gi|379005713|ref|YP_005261385.1|	-	0.026	14.3	0.3	0.053	13.3	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
Apolipoprotein	PF01442.13	gi|379005713|ref|YP_005261385.1|	-	0.038	13.4	0.3	0.076	12.5	0.2	1.4	1	0	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
Syntaxin-6_N	PF09177.6	gi|379005713|ref|YP_005261385.1|	-	0.11	12.8	0.4	0.32	11.4	0.3	1.8	1	0	0	1	1	1	0	Syntaxin	6,	N-terminal
DUF3391	PF11871.3	gi|379005713|ref|YP_005261385.1|	-	0.17	12.1	0.1	1.7	8.8	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3391)
Reo_sigmaC	PF04582.7	gi|379005713|ref|YP_005261385.1|	-	0.19	10.8	2.5	0.29	10.2	1.7	1.2	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
FlaC_arch	PF05377.6	gi|379005713|ref|YP_005261385.1|	-	0.26	11.2	1.2	3	7.8	0.8	2.6	1	1	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
Cpn60_TCP1	PF00118.19	gi|379005714|ref|YP_005261386.1|	-	8.9e-168	558.8	5.4	1e-167	558.6	3.7	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
Dak2	PF02734.12	gi|379005714|ref|YP_005261386.1|	-	9.8e-05	22.0	1.4	0.14	11.8	0.5	2.5	2	0	0	2	2	2	2	DAK2	domain
Arena_RNA_pol	PF06317.6	gi|379005715|ref|YP_005261387.1|	-	0.074	9.6	0.0	0.083	9.4	0.0	1.0	1	0	0	1	1	1	0	Arenavirus	RNA	polymerase
VirB3	PF05101.8	gi|379005715|ref|YP_005261387.1|	-	0.63	10.0	5.4	0.7	9.9	0.0	2.2	2	0	0	2	2	2	0	Type	IV	secretory	pathway,	VirB3-like	protein
T2SE	PF00437.15	gi|379005716|ref|YP_005261388.1|	-	1.7e-24	86.1	0.0	2.5e-24	85.6	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_18	PF13238.1	gi|379005716|ref|YP_005261388.1|	-	7.5e-08	32.7	0.1	1.8e-07	31.4	0.0	1.6	2	0	0	2	2	1	1	AAA	domain
ABC_tran	PF00005.22	gi|379005716|ref|YP_005261388.1|	-	1.6e-06	28.4	0.0	4.4e-06	27.0	0.0	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_19	PF13245.1	gi|379005716|ref|YP_005261388.1|	-	1.9e-06	27.5	0.0	6.6e-06	25.7	0.0	2.0	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|379005716|ref|YP_005261388.1|	-	3.1e-06	28.0	0.0	8.7e-06	26.5	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|379005716|ref|YP_005261388.1|	-	1.3e-05	25.2	0.1	8e-05	22.6	0.0	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|379005716|ref|YP_005261388.1|	-	9e-05	21.9	0.0	0.00018	20.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_14	PF13173.1	gi|379005716|ref|YP_005261388.1|	-	9.2e-05	22.3	0.0	0.00018	21.3	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|379005716|ref|YP_005261388.1|	-	0.00018	21.6	2.7	0.0023	18.0	0.6	2.9	2	1	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|379005716|ref|YP_005261388.1|	-	0.00021	21.0	0.0	0.00056	19.6	0.0	1.7	2	0	0	2	2	2	1	Archaeal	ATPase
AAA_30	PF13604.1	gi|379005716|ref|YP_005261388.1|	-	0.00036	20.1	0.0	0.0008	19.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|379005716|ref|YP_005261388.1|	-	0.00078	18.9	0.0	0.011	15.2	0.0	2.1	2	0	0	2	2	2	1	AAA-like	domain
NACHT	PF05729.7	gi|379005716|ref|YP_005261388.1|	-	0.00099	18.7	0.1	0.0088	15.7	0.0	2.6	1	1	1	2	2	2	1	NACHT	domain
AAA_33	PF13671.1	gi|379005716|ref|YP_005261388.1|	-	0.0013	18.6	0.0	0.0032	17.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
Mg_chelatase	PF01078.16	gi|379005716|ref|YP_005261388.1|	-	0.0013	17.8	0.0	0.0027	16.8	0.0	1.5	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.24	gi|379005716|ref|YP_005261388.1|	-	0.002	18.3	0.4	0.0095	16.1	0.3	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|379005716|ref|YP_005261388.1|	-	0.0021	17.4	0.0	0.013	14.9	0.0	2.1	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
AAA_11	PF13086.1	gi|379005716|ref|YP_005261388.1|	-	0.0036	16.9	0.0	0.012	15.1	0.0	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_24	PF13479.1	gi|379005716|ref|YP_005261388.1|	-	0.0038	16.8	0.1	0.014	14.9	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|379005716|ref|YP_005261388.1|	-	0.0039	16.6	0.4	0.011	15.1	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
AAA_28	PF13521.1	gi|379005716|ref|YP_005261388.1|	-	0.004	17.1	0.0	0.0084	16.0	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
NTPase_1	PF03266.10	gi|379005716|ref|YP_005261388.1|	-	0.0045	16.7	0.2	0.029	14.0	0.0	2.3	1	1	1	2	2	2	1	NTPase
DUF258	PF03193.11	gi|379005716|ref|YP_005261388.1|	-	0.0049	16.0	0.0	0.012	14.8	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|379005716|ref|YP_005261388.1|	-	0.0052	16.2	0.0	0.014	14.8	0.0	1.7	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|379005716|ref|YP_005261388.1|	-	0.0054	15.8	0.0	0.018	14.1	0.0	1.9	2	0	0	2	2	2	1	Zeta	toxin
DEAD	PF00270.24	gi|379005716|ref|YP_005261388.1|	-	0.0075	15.7	0.3	0.15	11.5	0.0	2.5	2	1	1	3	3	3	1	DEAD/DEAH	box	helicase
AAA_23	PF13476.1	gi|379005716|ref|YP_005261388.1|	-	0.016	15.5	1.8	0.027	14.8	0.2	2.2	2	1	0	2	2	2	0	AAA	domain
RNA12	PF10443.4	gi|379005716|ref|YP_005261388.1|	-	0.022	13.2	0.0	0.038	12.4	0.0	1.4	1	0	0	1	1	1	0	RNA12	protein
TIP49	PF06068.8	gi|379005716|ref|YP_005261388.1|	-	0.027	13.1	0.0	0.042	12.5	0.0	1.3	1	0	0	1	1	1	0	TIP49	C-terminus
FtsK_SpoIIIE	PF01580.13	gi|379005716|ref|YP_005261388.1|	-	0.036	13.5	0.0	0.085	12.3	0.0	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
RuvB_N	PF05496.7	gi|379005716|ref|YP_005261388.1|	-	0.041	12.9	0.1	0.097	11.6	0.0	1.6	2	0	0	2	2	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_21	PF13304.1	gi|379005716|ref|YP_005261388.1|	-	0.059	13.3	0.0	0.12	12.3	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|379005716|ref|YP_005261388.1|	-	0.061	13.0	0.0	0.22	11.2	0.0	1.9	1	1	1	2	2	2	0	AAA	domain	(dynein-related	subfamily)
KTI12	PF08433.5	gi|379005716|ref|YP_005261388.1|	-	0.068	12.3	0.0	0.12	11.5	0.0	1.4	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
Viral_helicase1	PF01443.13	gi|379005716|ref|YP_005261388.1|	-	0.074	12.5	0.0	0.12	11.8	0.0	1.3	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ATP_bind_1	PF03029.12	gi|379005716|ref|YP_005261388.1|	-	0.076	12.5	0.0	0.13	11.7	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
PhoH	PF02562.11	gi|379005716|ref|YP_005261388.1|	-	0.08	12.1	0.0	1.3	8.2	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
LuxC	PF05893.9	gi|379005716|ref|YP_005261388.1|	-	0.082	11.6	0.2	3.3	6.3	0.0	2.1	2	0	0	2	2	2	0	Acyl-CoA	reductase	(LuxC)
DUF4350	PF14258.1	gi|379005716|ref|YP_005261388.1|	-	0.14	12.3	0.1	0.77	10.0	0.0	2.3	2	0	0	2	2	1	0	Domain	of	unknown	function	(DUF4350)
TF_Zn_Ribbon	PF08271.7	gi|379005717|ref|YP_005261389.1|	-	2.2e-07	30.0	1.9	3.6e-07	29.3	1.3	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
TFIIB	PF00382.14	gi|379005717|ref|YP_005261389.1|	-	3.8e-07	29.8	0.3	7.2e-07	28.9	0.2	1.6	1	1	0	1	1	1	1	Transcription	factor	TFIIB	repeat
A2L_zn_ribbon	PF08792.5	gi|379005717|ref|YP_005261389.1|	-	5.3e-05	22.5	1.2	8.1e-05	21.9	0.9	1.3	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
RRN7	PF11781.3	gi|379005717|ref|YP_005261389.1|	-	8.4e-05	21.9	0.2	0.00015	21.2	0.2	1.3	1	0	0	1	1	1	1	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
HTH_23	PF13384.1	gi|379005717|ref|YP_005261389.1|	-	0.0037	16.8	0.7	1.1	8.9	0.2	2.6	1	1	1	2	2	2	2	Homeodomain-like	domain
OrfB_Zn_ribbon	PF07282.6	gi|379005717|ref|YP_005261389.1|	-	0.014	15.0	0.3	0.032	13.8	0.2	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
GerE	PF00196.14	gi|379005717|ref|YP_005261389.1|	-	0.027	13.7	0.0	2.5	7.4	0.0	2.5	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
DUF2296	PF10058.4	gi|379005717|ref|YP_005261389.1|	-	0.04	13.6	1.3	0.13	12.0	0.9	1.9	1	1	0	1	1	1	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
HTH_38	PF13936.1	gi|379005717|ref|YP_005261389.1|	-	0.076	12.5	3.9	2.2	7.8	0.3	2.9	3	0	0	3	3	3	0	Helix-turn-helix	domain
zf-Mss51	PF13824.1	gi|379005717|ref|YP_005261389.1|	-	0.088	12.6	0.4	0.22	11.3	0.3	1.7	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Zn_Tnp_IS1595	PF12760.2	gi|379005717|ref|YP_005261389.1|	-	0.096	12.5	0.3	0.17	11.6	0.2	1.4	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
T4_baseplate	PF12322.3	gi|379005717|ref|YP_005261389.1|	-	0.11	11.7	0.6	0.22	10.7	0.2	1.5	1	1	0	1	1	1	0	T4	bacteriophage	base	plate	protein
DUF35_N	PF12172.3	gi|379005717|ref|YP_005261389.1|	-	0.13	12.2	1.0	0.85	9.6	0.3	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HTH_36	PF13730.1	gi|379005717|ref|YP_005261389.1|	-	0.16	12.1	0.7	6.3	7.0	0.0	2.8	3	0	0	3	3	3	0	Helix-turn-helix	domain
Med27	PF11571.3	gi|379005717|ref|YP_005261389.1|	-	0.16	12.1	0.7	0.57	10.3	0.4	2.0	2	1	0	2	2	2	0	Mediator	complex	subunit	27
RPA_interact_C	PF14768.1	gi|379005717|ref|YP_005261389.1|	-	0.16	12.3	0.4	0.29	11.5	0.3	1.4	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
Cyclin_C	PF02984.14	gi|379005717|ref|YP_005261389.1|	-	0.19	11.6	0.9	0.86	9.5	0.0	2.2	2	1	0	3	3	3	0	Cyclin,	C-terminal	domain
zf-ribbon_3	PF13248.1	gi|379005717|ref|YP_005261389.1|	-	0.61	9.3	2.7	1.9	7.8	1.8	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
DUF4428	PF14471.1	gi|379005717|ref|YP_005261389.1|	-	0.64	9.8	2.6	2.4	7.9	1.8	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
PilZ	PF07238.9	gi|379005718|ref|YP_005261390.1|	-	0.092	12.7	0.4	0.9	9.5	0.0	2.2	2	1	0	2	2	2	0	PilZ	domain
SH3_2	PF07653.12	gi|379005718|ref|YP_005261390.1|	-	0.15	11.5	0.4	1.5	8.3	0.1	2.1	2	0	0	2	2	2	0	Variant	SH3	domain
DUF104	PF01954.11	gi|379005718|ref|YP_005261390.1|	-	4.3	7.4	6.7	13	5.8	1.8	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	DUF104
bact-PGI_C	PF10432.4	gi|379005719|ref|YP_005261391.1|	-	4.8e-27	94.5	0.0	7.7e-27	93.9	0.0	1.3	1	0	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	region
SIS	PF01380.17	gi|379005719|ref|YP_005261391.1|	-	1.1e-06	28.2	0.1	4e-06	26.4	0.1	1.9	1	1	0	1	1	1	1	SIS	domain
SIS_2	PF13580.1	gi|379005719|ref|YP_005261391.1|	-	7.1e-05	22.5	0.1	0.00018	21.2	0.0	1.7	2	0	0	2	2	2	1	SIS	domain
Peptidase_A24	PF01478.13	gi|379005720|ref|YP_005261392.1|	-	1.5e-06	28.2	6.6	2.8e-06	27.4	4.6	1.4	1	0	0	1	1	1	1	Type	IV	leader	peptidase	family
MerC	PF03203.9	gi|379005720|ref|YP_005261392.1|	-	0.84	10.0	3.9	1.5	9.2	2.7	1.5	1	1	0	1	1	1	0	MerC	mercury	resistance	protein
DUF3815	PF12821.2	gi|379005720|ref|YP_005261392.1|	-	1.8	8.4	7.9	3.2	7.6	5.5	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3815)
DUF4131	PF13567.1	gi|379005720|ref|YP_005261392.1|	-	9.5	5.5	10.6	1.5	8.1	2.1	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4131)
UPRTase	PF14681.1	gi|379005721|ref|YP_005261393.1|	-	1.6e-57	194.1	0.0	1.8e-57	193.9	0.0	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|379005721|ref|YP_005261393.1|	-	1.3e-07	31.4	1.6	2e-07	30.7	1.1	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Peptidase_M1	PF01433.15	gi|379005722|ref|YP_005261394.1|	-	2.4e-58	198.0	0.0	5.9e-58	196.8	0.0	1.7	1	1	0	1	1	1	1	Peptidase	family	M1
HEAT_2	PF13646.1	gi|379005722|ref|YP_005261394.1|	-	2.3e-33	114.3	20.1	1.1e-10	41.5	0.1	4.2	1	1	4	5	5	5	5	HEAT	repeats
Peptidase_MA_2	PF13485.1	gi|379005722|ref|YP_005261394.1|	-	4.9e-13	49.2	0.6	1.1e-12	48.0	0.4	1.6	1	0	0	1	1	1	1	Peptidase	MA	superfamily
HEAT_PBS	PF03130.11	gi|379005722|ref|YP_005261394.1|	-	8.9e-11	41.2	16.8	0.096	13.2	0.5	6.7	6	0	0	6	6	6	4	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.17	gi|379005722|ref|YP_005261394.1|	-	1.2e-07	31.1	3.4	1.9	8.8	0.0	6.5	6	0	0	6	6	6	2	HEAT	repeat
HEAT_EZ	PF13513.1	gi|379005722|ref|YP_005261394.1|	-	0.0014	19.0	14.4	1.2	9.7	0.1	5.3	4	2	0	4	4	4	2	HEAT-like	repeat
Atg14	PF10186.4	gi|379005722|ref|YP_005261394.1|	-	0.11	11.3	1.1	7.8	5.3	0.0	2.1	2	0	0	2	2	2	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
IncA	PF04156.9	gi|379005722|ref|YP_005261394.1|	-	0.42	10.1	2.4	0.62	9.6	1.7	1.2	1	0	0	1	1	1	0	IncA	protein
TSC22	PF01166.13	gi|379005722|ref|YP_005261394.1|	-	0.64	10.0	2.9	1.7	8.6	2.0	1.7	1	0	0	1	1	1	0	TSC-22/dip/bun	family
BMFP	PF04380.8	gi|379005722|ref|YP_005261394.1|	-	1.2	9.2	6.7	14	5.9	4.6	2.5	1	1	0	1	1	1	0	Membrane	fusogenic	activity
HTH_45	PF14947.1	gi|379005723|ref|YP_005261395.1|	-	0.0014	18.3	0.3	0.0049	16.6	0.0	2.1	3	0	0	3	3	3	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|379005723|ref|YP_005261395.1|	-	0.019	15.2	0.1	0.82	10.0	0.1	2.7	3	0	0	3	3	3	0	Winged	helix	DNA-binding	domain
DUF505	PF04458.7	gi|379005723|ref|YP_005261395.1|	-	0.02	13.0	0.0	0.032	12.3	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF505)
MarR_2	PF12802.2	gi|379005724|ref|YP_005261396.1|	-	9.4e-09	34.8	0.4	1.6e-08	34.0	0.3	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|379005724|ref|YP_005261396.1|	-	2.4e-05	23.6	1.5	4.3e-05	22.8	0.1	2.1	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|379005724|ref|YP_005261396.1|	-	6.6e-05	22.4	0.1	0.00016	21.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|379005724|ref|YP_005261396.1|	-	8.4e-05	22.8	1.1	0.00035	20.8	0.7	2.0	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|379005724|ref|YP_005261396.1|	-	0.0001	22.0	0.3	0.00023	20.9	0.2	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|379005724|ref|YP_005261396.1|	-	0.00014	21.5	0.1	0.00088	18.9	0.1	2.3	2	1	0	2	2	2	1	AsnC	family
HTH_Crp_2	PF13545.1	gi|379005724|ref|YP_005261396.1|	-	0.00022	20.9	0.2	0.00037	20.2	0.1	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|379005724|ref|YP_005261396.1|	-	0.0061	16.0	2.2	0.052	13.1	1.5	2.2	1	1	0	1	1	1	1	LexA	DNA	binding	domain
HTH_11	PF08279.7	gi|379005724|ref|YP_005261396.1|	-	0.0069	16.0	1.1	0.0097	15.5	0.1	1.9	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.14	gi|379005724|ref|YP_005261396.1|	-	0.01	15.5	0.8	0.17	11.6	0.1	2.8	2	1	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_8	PF02954.14	gi|379005724|ref|YP_005261396.1|	-	0.016	14.7	0.3	0.047	13.2	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
MarR	PF01047.17	gi|379005724|ref|YP_005261396.1|	-	0.024	14.3	0.1	0.038	13.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Sigma70_r4_2	PF08281.7	gi|379005724|ref|YP_005261396.1|	-	0.028	13.8	0.0	0.1	12.0	0.0	2.0	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_10	PF04967.7	gi|379005724|ref|YP_005261396.1|	-	0.03	13.8	0.6	0.62	9.6	0.0	2.5	2	0	0	2	2	2	0	HTH	DNA	binding	domain
RP-C	PF03428.8	gi|379005724|ref|YP_005261396.1|	-	0.051	13.0	0.1	0.096	12.1	0.0	1.4	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
HTH_23	PF13384.1	gi|379005724|ref|YP_005261396.1|	-	0.059	13.0	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_IclR	PF09339.5	gi|379005724|ref|YP_005261396.1|	-	0.12	11.9	1.3	0.53	9.9	0.9	2.0	1	1	0	1	1	1	0	IclR	helix-turn-helix	domain
CarboxypepD_reg	PF13620.1	gi|379005725|ref|YP_005261397.1|	-	0.01	15.8	3.2	3.8	7.6	0.1	3.1	3	0	0	3	3	3	0	Carboxypeptidase	regulatory-like	domain
P12	PF12669.2	gi|379005725|ref|YP_005261397.1|	-	0.25	11.5	0.1	0.25	11.5	0.1	2.1	2	0	0	2	2	2	0	Virus	attachment	protein	p12	family
adh_short_C2	PF13561.1	gi|379005726|ref|YP_005261398.1|	-	2e-27	96.5	0.0	2.7e-27	96.0	0.0	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|379005726|ref|YP_005261398.1|	-	1.2e-17	64.3	2.6	8.7e-17	61.5	1.8	1.9	1	1	0	1	1	1	1	short	chain	dehydrogenase
NAD_binding_10	PF13460.1	gi|379005726|ref|YP_005261398.1|	-	1.6e-07	31.5	0.4	4.1e-07	30.1	0.2	1.8	1	1	1	2	2	2	1	NADH(P)-binding
KR	PF08659.5	gi|379005726|ref|YP_005261398.1|	-	9.2e-07	28.6	0.6	0.0001	22.0	0.4	2.1	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|379005726|ref|YP_005261398.1|	-	0.00016	21.1	0.0	0.00034	20.1	0.0	1.6	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|379005726|ref|YP_005261398.1|	-	0.025	13.4	0.0	0.038	12.8	0.0	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
DapB_N	PF01113.15	gi|379005726|ref|YP_005261398.1|	-	0.05	13.5	0.0	0.086	12.7	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
ADH_zinc_N	PF00107.21	gi|379005726|ref|YP_005261398.1|	-	0.073	12.6	0.2	0.31	10.6	0.1	2.1	1	1	0	1	1	1	0	Zinc-binding	dehydrogenase
GTP_cyclohydroI	PF01227.17	gi|379005727|ref|YP_005261399.1|	-	3.2e-46	156.8	0.0	3.9e-46	156.5	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
CobW_C	PF07683.9	gi|379005727|ref|YP_005261399.1|	-	0.067	12.9	0.0	0.12	12.1	0.0	1.4	1	0	0	1	1	1	0	Cobalamin	synthesis	protein	cobW	C-terminal	domain
Glyco_tranf_2_3	PF13641.1	gi|379005728|ref|YP_005261400.1|	-	0.005	16.6	0.2	0.019	14.7	0.0	1.9	2	0	0	2	2	2	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|379005728|ref|YP_005261400.1|	-	0.0068	16.1	0.0	0.01	15.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Complex1_49kDa	PF00346.14	gi|379005729|ref|YP_005261401.1|	-	5.2e-54	183.0	0.0	6.3e-54	182.7	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
Chorismate_synt	PF01264.16	gi|379005730|ref|YP_005261402.1|	-	9.1e-125	415.7	0.0	1e-124	415.5	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Shikimate_dh_N	PF08501.6	gi|379005731|ref|YP_005261403.1|	-	1.2e-27	95.8	0.0	2.5e-27	94.7	0.0	1.6	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.15	gi|379005731|ref|YP_005261403.1|	-	3e-16	59.7	0.0	5e-16	59.0	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|379005731|ref|YP_005261403.1|	-	2.3e-05	24.7	0.2	8.4e-05	22.9	0.1	1.9	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|379005731|ref|YP_005261403.1|	-	0.032	13.2	0.0	0.042	12.8	0.0	1.3	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
Hydrolase_6	PF13344.1	gi|379005731|ref|YP_005261403.1|	-	0.056	13.3	0.0	0.21	11.5	0.0	1.9	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
2-Hacid_dh_C	PF02826.14	gi|379005731|ref|YP_005261403.1|	-	0.09	11.9	0.0	0.17	11.0	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
P5CR_dimer	PF14748.1	gi|379005732|ref|YP_005261404.1|	-	5.6e-18	64.9	0.0	9.9e-18	64.1	0.0	1.4	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|379005732|ref|YP_005261404.1|	-	3.1e-10	40.3	1.4	8.7e-10	38.9	0.0	2.3	3	0	0	3	3	3	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|379005732|ref|YP_005261404.1|	-	2.9e-07	29.8	0.0	4.9e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|379005732|ref|YP_005261404.1|	-	4.1e-06	26.7	0.0	8.7e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Rossmann-like	PF10727.4	gi|379005732|ref|YP_005261404.1|	-	0.00062	19.4	0.0	0.0019	17.8	0.0	1.8	1	0	0	1	1	1	1	Rossmann-like	domain
ApbA	PF02558.11	gi|379005732|ref|YP_005261404.1|	-	0.0046	16.4	0.0	0.008	15.6	0.0	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
IlvN	PF07991.7	gi|379005732|ref|YP_005261404.1|	-	0.0059	15.9	0.0	0.0097	15.2	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_10	PF13460.1	gi|379005732|ref|YP_005261404.1|	-	0.0083	16.1	0.1	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
TrkA_N	PF02254.13	gi|379005732|ref|YP_005261404.1|	-	0.01	15.8	0.6	0.058	13.3	0.1	2.2	2	0	0	2	2	2	0	TrkA-N	domain
DapB_N	PF01113.15	gi|379005732|ref|YP_005261404.1|	-	0.015	15.2	0.0	0.025	14.4	0.0	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
GFO_IDH_MocA	PF01408.17	gi|379005732|ref|YP_005261404.1|	-	0.017	15.6	0.0	0.053	14.0	0.0	1.8	2	0	0	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_Gly3P_dh_N	PF01210.18	gi|379005732|ref|YP_005261404.1|	-	0.018	14.7	3.3	0.41	10.3	1.0	3.3	2	1	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
3HCDH_N	PF02737.13	gi|379005732|ref|YP_005261404.1|	-	0.02	14.5	0.3	0.046	13.3	0.0	1.7	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|379005732|ref|YP_005261404.1|	-	0.062	13.4	0.0	0.17	11.9	0.0	1.8	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
NUDIX	PF00293.23	gi|379005733|ref|YP_005261405.1|	-	4.2e-23	81.4	0.3	5.1e-23	81.2	0.2	1.0	1	0	0	1	1	1	1	NUDIX	domain
PhoH	PF02562.11	gi|379005734|ref|YP_005261406.1|	-	2.1e-50	170.8	0.0	3.2e-50	170.2	0.0	1.3	1	0	0	1	1	1	1	PhoH-like	protein
KH_2	PF07650.12	gi|379005734|ref|YP_005261406.1|	-	1.1e-12	47.2	1.7	8.7e-10	38.0	0.4	2.6	1	1	1	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|379005734|ref|YP_005261406.1|	-	2.3e-08	33.5	0.2	2.5e-05	23.8	0.0	2.4	2	0	0	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|379005734|ref|YP_005261406.1|	-	1.7e-07	30.9	0.2	2.9e-05	23.7	0.0	2.6	2	0	0	2	2	2	1	NusA-like	KH	domain
IstB_IS21	PF01695.12	gi|379005734|ref|YP_005261406.1|	-	3.4e-05	23.3	0.0	6.4e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
KH_3	PF13014.1	gi|379005734|ref|YP_005261406.1|	-	4.5e-05	22.9	0.5	0.0024	17.4	0.0	2.5	2	0	0	2	2	2	1	KH	domain
AAA_22	PF13401.1	gi|379005734|ref|YP_005261406.1|	-	0.00036	20.6	0.0	0.00066	19.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_30	PF13604.1	gi|379005734|ref|YP_005261406.1|	-	0.0046	16.5	0.0	0.014	14.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|379005734|ref|YP_005261406.1|	-	0.085	13.1	0.0	0.24	11.7	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
KH_4	PF13083.1	gi|379005734|ref|YP_005261406.1|	-	0.092	12.3	1.6	4.2	7.0	0.1	2.9	3	0	0	3	3	3	0	KH	domain
ADH_N	PF08240.7	gi|379005735|ref|YP_005261407.1|	-	2.9e-32	110.6	0.3	5.9e-32	109.6	0.2	1.5	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|379005735|ref|YP_005261407.1|	-	2.4e-20	72.3	0.2	4e-20	71.6	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|379005735|ref|YP_005261407.1|	-	0.00084	20.2	0.0	0.0019	19.0	0.0	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|379005735|ref|YP_005261407.1|	-	0.019	14.5	1.1	0.042	13.4	0.8	1.5	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
adh_short	PF00106.20	gi|379005735|ref|YP_005261407.1|	-	0.038	13.8	1.4	0.066	13.1	1.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
CPSase_L_chain	PF00289.17	gi|379005735|ref|YP_005261407.1|	-	0.05	13.7	0.1	0.095	12.8	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
DUF3077	PF11275.3	gi|379005735|ref|YP_005261407.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3077)
NAD_binding_10	PF13460.1	gi|379005735|ref|YP_005261407.1|	-	0.11	12.4	1.1	0.19	11.7	0.8	1.4	1	0	0	1	1	1	0	NADH(P)-binding
Epimerase	PF01370.16	gi|379005736|ref|YP_005261408.1|	-	6.7e-52	176.2	0.0	8.1e-52	176.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|379005736|ref|YP_005261408.1|	-	4.1e-19	68.5	0.0	4.9e-19	68.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|379005736|ref|YP_005261408.1|	-	1.6e-17	63.1	0.0	2.8e-17	62.3	0.0	1.4	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|379005736|ref|YP_005261408.1|	-	6.6e-17	61.3	0.1	9.4e-16	57.5	0.1	2.4	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.7	gi|379005736|ref|YP_005261408.1|	-	4.5e-13	48.7	0.1	3.7e-08	32.6	0.0	2.2	1	1	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|379005736|ref|YP_005261408.1|	-	1.1e-10	41.7	0.0	2e-10	40.9	0.0	1.4	1	0	0	1	1	1	1	NADH(P)-binding
adh_short	PF00106.20	gi|379005736|ref|YP_005261408.1|	-	4.7e-06	26.6	2.3	5.6e-05	23.1	0.0	2.6	2	1	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|379005736|ref|YP_005261408.1|	-	0.0034	17.0	0.2	0.01	15.5	0.0	1.8	2	0	0	2	2	2	1	KR	domain
DapB_N	PF01113.15	gi|379005736|ref|YP_005261408.1|	-	0.0065	16.3	0.1	0.012	15.5	0.1	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
F420_oxidored	PF03807.12	gi|379005736|ref|YP_005261408.1|	-	0.01	16.2	0.0	0.021	15.2	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
NmrA	PF05368.8	gi|379005736|ref|YP_005261408.1|	-	0.011	15.0	0.5	0.024	13.8	0.3	1.7	1	1	0	1	1	1	0	NmrA-like	family
UDPG_MGDP_dh_N	PF03721.9	gi|379005736|ref|YP_005261408.1|	-	0.018	14.4	0.1	0.03	13.7	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
TrkA_N	PF02254.13	gi|379005736|ref|YP_005261408.1|	-	0.026	14.5	0.1	0.051	13.5	0.1	1.5	1	0	0	1	1	1	0	TrkA-N	domain
NAD_binding_2	PF03446.10	gi|379005736|ref|YP_005261408.1|	-	0.031	14.1	0.0	0.057	13.2	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
3HCDH_N	PF02737.13	gi|379005736|ref|YP_005261408.1|	-	0.045	13.4	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Glyco_trans_4_4	PF13579.1	gi|379005736|ref|YP_005261408.1|	-	0.063	13.4	0.1	0.11	12.6	0.1	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like	domain
EPSP_synthase	PF00275.15	gi|379005737|ref|YP_005261409.1|	-	1.3e-57	195.0	0.0	1.7e-57	194.7	0.0	1.0	1	0	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
DHQ_synthase	PF01761.15	gi|379005738|ref|YP_005261410.1|	-	1.7e-89	299.2	0.0	2e-89	298.9	0.0	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase
Fe-ADH_2	PF13685.1	gi|379005738|ref|YP_005261410.1|	-	1.9e-08	33.8	0.0	1.2e-07	31.2	0.0	1.9	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|379005738|ref|YP_005261410.1|	-	1.7e-06	26.9	2.4	3e-05	22.8	1.7	2.2	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Transket_pyr	PF02779.19	gi|379005739|ref|YP_005261411.1|	-	8.5e-35	119.8	0.1	2.2e-34	118.4	0.0	1.6	2	0	0	2	2	2	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|379005739|ref|YP_005261411.1|	-	2e-26	92.3	0.0	3.2e-26	91.6	0.0	1.4	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
HCV_NS4a	PF01006.15	gi|379005739|ref|YP_005261411.1|	-	0.69	9.4	3.0	12	5.5	1.0	2.6	2	0	0	2	2	2	0	Hepatitis	C	virus	non-structural	protein	NS4a
Transketolase_N	PF00456.16	gi|379005740|ref|YP_005261412.1|	-	4.3e-49	167.1	0.2	1.4e-48	165.4	0.1	1.5	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.1	gi|379005740|ref|YP_005261412.1|	-	5.2e-15	55.0	0.1	1.4e-08	34.0	0.0	3.2	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|379005740|ref|YP_005261412.1|	-	1.2e-09	37.8	0.8	7.3e-08	32.1	0.0	3.0	1	1	1	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.15	gi|379005740|ref|YP_005261412.1|	-	1.9e-08	33.3	0.0	2.4e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
XFP_N	PF09364.5	gi|379005740|ref|YP_005261412.1|	-	0.00016	20.3	0.1	0.00032	19.3	0.0	1.4	1	1	1	2	2	2	1	XFP	N-terminal	domain
tRNA-synt_1b	PF00579.20	gi|379005741|ref|YP_005261413.1|	-	6.9e-41	140.2	0.0	7.5e-39	133.5	0.0	2.0	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Glyco_hydro_114	PF03537.8	gi|379005741|ref|YP_005261413.1|	-	0.07	12.9	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	Glycoside-hydrolase	family	GH114
DAHP_synth_1	PF00793.15	gi|379005742|ref|YP_005261414.1|	-	4.1e-71	238.8	0.0	5e-71	238.5	0.0	1.0	1	0	0	1	1	1	1	DAHP	synthetase	I	family
NeuB	PF03102.9	gi|379005742|ref|YP_005261414.1|	-	7.2e-07	28.5	0.0	1.1e-06	27.9	0.0	1.3	1	0	0	1	1	1	1	NeuB	family
PEP_mutase	PF13714.1	gi|379005742|ref|YP_005261414.1|	-	0.017	14.3	0.1	0.2	10.8	0.0	2.0	2	0	0	2	2	2	0	Phosphoenolpyruvate	phosphomutase
PA	PF02225.17	gi|379005742|ref|YP_005261414.1|	-	0.057	13.1	0.1	4.7	6.9	0.0	3.1	3	0	0	3	3	3	0	PA	domain
NdhM	PF10664.4	gi|379005742|ref|YP_005261414.1|	-	0.17	11.7	0.0	0.36	10.7	0.0	1.4	1	0	0	1	1	1	0	Cyanobacterial	and	plastid	NDH-1	subunit	M
QueC	PF06508.8	gi|379005743|ref|YP_005261415.1|	-	1.2e-37	129.2	0.1	1.8e-37	128.7	0.0	1.2	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|379005743|ref|YP_005261415.1|	-	7.3e-06	25.5	0.0	9.2e-06	25.2	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
PTS_EIIA_1	PF00358.15	gi|379005743|ref|YP_005261415.1|	-	0.049	13.1	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
CBS	PF00571.23	gi|379005744|ref|YP_005261416.1|	-	5.4e-26	90.1	1.5	1.9e-13	49.9	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
ASCH	PF04266.9	gi|379005744|ref|YP_005261416.1|	-	0.13	12.6	0.1	5.2	7.4	0.0	2.0	2	0	0	2	2	2	0	ASCH	domain
Pribosyltran	PF00156.22	gi|379005745|ref|YP_005261417.1|	-	6.2e-15	55.0	0.3	1.4e-14	53.8	0.2	1.6	2	0	0	2	2	2	1	Phosphoribosyl	transferase	domain
HTH_3	PF01381.17	gi|379005745|ref|YP_005261417.1|	-	3.2e-06	26.8	0.1	6.6e-06	25.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|379005745|ref|YP_005261417.1|	-	0.0023	17.9	0.0	0.0045	17.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Acyl-CoA_dh_1	PF00441.19	gi|379005746|ref|YP_005261418.1|	-	1.5e-34	119.3	2.7	2.2e-34	118.7	1.9	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|379005746|ref|YP_005261418.1|	-	2.2e-22	79.7	0.1	6e-22	78.3	0.1	1.8	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|379005746|ref|YP_005261418.1|	-	9.1e-15	55.0	1.8	1.7e-14	54.2	1.3	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|379005746|ref|YP_005261418.1|	-	1.4e-13	50.1	0.2	3e-13	49.0	0.1	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
OKR_DC_1_C	PF03711.10	gi|379005746|ref|YP_005261418.1|	-	0.055	13.5	0.0	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	C-terminal	domain
DUF1275	PF06912.6	gi|379005748|ref|YP_005261420.1|	-	0.13	11.4	2.4	1.7	7.8	0.1	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1275)
PaRep2b	PF07775.6	gi|379005750|ref|YP_005261422.1|	-	2.4e-06	26.0	0.1	2.7e-06	25.8	0.0	1.0	1	0	0	1	1	1	1	PaRep2b	protein
SRP54	PF00448.17	gi|379005751|ref|YP_005261423.1|	-	4.7e-18	65.3	0.0	7.7e-18	64.6	0.0	1.3	1	1	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
CbiA	PF01656.18	gi|379005751|ref|YP_005261423.1|	-	0.059	12.7	0.1	0.51	9.7	0.1	1.9	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
SRP54	PF00448.17	gi|379005752|ref|YP_005261424.1|	-	4.1e-06	26.3	0.0	6.5e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
NTP_transf_2	PF01909.18	gi|379005752|ref|YP_005261424.1|	-	4.6e-06	26.8	0.0	7.6e-06	26.1	0.0	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF86	PF01934.12	gi|379005753|ref|YP_005261425.1|	-	5.3e-14	51.8	0.0	8.2e-14	51.2	0.0	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	DUF86
Gb3_synth	PF04572.7	gi|379005755|ref|YP_005261427.1|	-	0.13	11.9	0.9	0.16	11.6	0.3	1.5	1	1	0	1	1	1	0	Alpha	1,4-glycosyltransferase	conserved	region
DUF2291	PF10054.4	gi|379005756|ref|YP_005261428.1|	-	0.094	11.9	0.1	0.21	10.8	0.0	1.6	2	0	0	2	2	2	0	Predicted	periplasmic	lipoprotein	(DUF2291)
PaRep2b	PF07775.6	gi|379005757|ref|YP_005261429.1|	-	4.9e-136	453.9	21.0	2.7e-88	296.4	4.1	2.7	2	1	1	3	3	3	2	PaRep2b	protein
DUF2151	PF10221.4	gi|379005757|ref|YP_005261429.1|	-	0.16	10.0	0.1	0.25	9.4	0.0	1.2	1	0	0	1	1	1	0	Cell	cycle	and	development	regulator
RHH_1	PF01402.16	gi|379005764|ref|YP_005261435.1|	-	4.1e-05	23.2	0.3	4.1e-05	23.2	0.2	2.6	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Atg14	PF10186.4	gi|379005764|ref|YP_005261435.1|	-	0.0013	17.7	5.6	0.0019	17.2	3.9	1.1	1	0	0	1	1	1	1	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
CcdA	PF07362.7	gi|379005764|ref|YP_005261435.1|	-	0.002	17.9	0.0	0.002	17.9	0.0	2.2	3	0	0	3	3	3	1	Post-segregation	antitoxin	CcdA
TMF_DNA_bd	PF12329.3	gi|379005764|ref|YP_005261435.1|	-	0.0022	17.7	10.4	0.0056	16.4	7.2	1.7	1	0	0	1	1	1	1	TATA	element	modulatory	factor	1	DNA	binding
G-gamma	PF00631.17	gi|379005764|ref|YP_005261435.1|	-	0.025	14.3	0.0	0.025	14.3	0.0	3.4	3	2	0	3	3	3	0	GGL	domain
MAT1	PF06391.8	gi|379005764|ref|YP_005261435.1|	-	0.06	12.9	5.2	0.09	12.3	3.6	1.2	1	0	0	1	1	1	0	CDK-activating	kinase	assembly	factor	MAT1
APG6	PF04111.7	gi|379005764|ref|YP_005261435.1|	-	0.07	12.1	6.6	0.097	11.6	4.5	1.2	1	0	0	1	1	1	0	Autophagy	protein	Apg6
zf-C4pol	PF14260.1	gi|379005764|ref|YP_005261435.1|	-	0.099	12.6	0.0	0.3	11.1	0.0	1.8	1	1	1	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
UPF0223	PF05256.7	gi|379005764|ref|YP_005261435.1|	-	0.11	12.5	2.8	0.19	11.8	0.1	2.2	1	1	1	2	2	2	0	Uncharacterised	protein	family	(UPF0223)
NodZ	PF05830.6	gi|379005764|ref|YP_005261435.1|	-	0.14	10.7	0.0	0.22	10.0	0.0	1.3	1	0	0	1	1	1	0	Nodulation	protein	Z	(NodZ)
PEP-utilisers_N	PF05524.8	gi|379005764|ref|YP_005261435.1|	-	0.22	11.2	5.0	0.15	11.9	1.6	1.9	2	0	0	2	2	2	0	PEP-utilising	enzyme,	N-terminal
DP	PF08781.5	gi|379005764|ref|YP_005261435.1|	-	0.29	10.8	8.9	0.24	11.0	3.5	2.1	1	1	1	2	2	2	0	Transcription	factor	DP
AKNA	PF12443.3	gi|379005764|ref|YP_005261435.1|	-	0.58	10.2	4.7	0.57	10.2	1.7	2.0	1	1	0	2	2	2	0	AT-hook-containing	transcription	factor
PSK_trans_fac	PF07704.6	gi|379005764|ref|YP_005261435.1|	-	0.6	10.8	7.2	6.4	7.5	0.0	3.1	2	1	2	4	4	4	0	Rv0623-like	transcription	factor
Phage_min_cap2	PF06152.6	gi|379005764|ref|YP_005261435.1|	-	2.9	6.7	6.5	1.6	7.6	1.9	2.1	2	1	0	2	2	2	0	Phage	minor	capsid	protein	2
IncA	PF04156.9	gi|379005764|ref|YP_005261435.1|	-	3.7	7.1	11.1	6.4	6.3	7.7	1.4	1	1	0	1	1	1	0	IncA	protein
TPD52	PF04201.10	gi|379005764|ref|YP_005261435.1|	-	7.5	6.2	10.0	1.6	8.4	4.6	1.6	2	0	0	2	2	2	0	Tumour	protein	D52	family
PepSY_2	PF13670.1	gi|379005765|ref|YP_005261436.1|	-	0.1	12.5	0.2	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	Peptidase	propeptide	and	YPEB	domain
DUF3324	PF11797.3	gi|379005765|ref|YP_005261436.1|	-	0.11	12.2	0.6	0.19	11.4	0.2	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	C-terminal	(DUF3324)
DUF2256	PF10013.4	gi|379005766|ref|YP_005261437.1|	-	0.9	9.3	3.8	6.4	6.6	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
HTH_36	PF13730.1	gi|379005767|ref|YP_005261438.1|	-	0.00012	22.0	0.1	0.0002	21.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|379005767|ref|YP_005261438.1|	-	0.0047	16.7	0.1	0.0055	16.4	0.1	1.3	1	1	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|379005767|ref|YP_005261438.1|	-	0.012	15.8	0.0	0.016	15.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.11	gi|379005767|ref|YP_005261438.1|	-	0.017	15.1	0.0	0.028	14.5	0.0	1.3	1	1	0	1	1	1	0	Penicillinase	repressor
Arg_repressor	PF01316.16	gi|379005767|ref|YP_005261438.1|	-	0.028	13.9	0.0	0.056	12.9	0.0	1.5	2	0	0	2	2	2	0	Arginine	repressor,	DNA	binding	domain
MarR_2	PF12802.2	gi|379005767|ref|YP_005261438.1|	-	0.029	14.0	0.0	0.04	13.6	0.0	1.3	1	0	0	1	1	1	0	MarR	family
Topoisom_bac	PF01131.15	gi|379005767|ref|YP_005261438.1|	-	0.036	12.9	0.1	0.043	12.6	0.1	1.0	1	0	0	1	1	1	0	DNA	topoisomerase
MarR	PF01047.17	gi|379005767|ref|YP_005261438.1|	-	0.053	13.2	0.1	0.11	12.2	0.1	1.6	1	1	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.14	gi|379005767|ref|YP_005261438.1|	-	0.056	13.3	0.0	0.087	12.7	0.0	1.3	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.1	gi|379005767|ref|YP_005261438.1|	-	0.074	12.4	0.0	0.16	11.3	0.0	1.6	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Mrr_N	PF14338.1	gi|379005768|ref|YP_005261439.1|	-	3.4e-06	27.0	0.0	0.03	14.4	0.0	2.1	1	1	1	2	2	2	2	Mrr	N-terminal	domain
HTH_27	PF13463.1	gi|379005768|ref|YP_005261439.1|	-	0.012	15.9	0.1	0.02	15.2	0.0	1.5	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2161	PF09929.4	gi|379005768|ref|YP_005261439.1|	-	0.038	13.9	0.0	0.047	13.6	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2161)
Fe_dep_repress	PF01325.14	gi|379005768|ref|YP_005261439.1|	-	0.11	12.4	0.0	0.19	11.6	0.0	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
efThoc1	PF11957.3	gi|379005769|ref|YP_005261440.1|	-	0.0086	14.6	0.1	0.0098	14.4	0.1	1.0	1	0	0	1	1	1	1	THO	complex	subunit	1	transcription	elongation	factor
DUF4391	PF14335.1	gi|379005771|ref|YP_005261442.1|	-	0.025	13.9	0.8	0.032	13.6	0.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4391)
DSX_dimer	PF08828.5	gi|379005771|ref|YP_005261442.1|	-	0.064	12.8	0.3	0.42	10.1	0.1	2.2	2	0	0	2	2	2	0	Doublesex	dimerisation	domain
Snapin_Pallidin	PF14712.1	gi|379005771|ref|YP_005261442.1|	-	0.19	12.0	2.6	2.8	8.3	0.5	2.0	2	0	0	2	2	2	0	Snapin/Pallidin
RHH_1	PF01402.16	gi|379005773|ref|YP_005261444.1|	-	5.7e-06	26.0	0.0	9.7e-06	25.2	0.0	1.4	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_2	PF03693.9	gi|379005773|ref|YP_005261444.1|	-	0.004	17.2	0.0	0.0053	16.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
RHH_1	PF01402.16	gi|379005774|ref|YP_005261445.1|	-	0.00043	20.0	0.8	0.00081	19.1	0.1	1.7	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RelB	PF04221.7	gi|379005774|ref|YP_005261445.1|	-	0.0046	16.6	0.0	0.08	12.7	0.0	2.1	2	0	0	2	2	2	1	RelB	antitoxin
DUF4580	PF15162.1	gi|379005774|ref|YP_005261445.1|	-	0.015	14.6	0.0	0.02	14.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4580)
AHS1	PF02682.11	gi|379005774|ref|YP_005261445.1|	-	0.033	13.6	0.1	0.038	13.4	0.0	1.1	1	0	0	1	1	1	0	Allophanate	hydrolase	subunit	1
DUF1778	PF08681.6	gi|379005774|ref|YP_005261445.1|	-	0.08	12.7	0.0	0.19	11.5	0.0	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1778)
DUF3408	PF11888.3	gi|379005774|ref|YP_005261445.1|	-	0.089	12.7	0.1	0.15	11.9	0.1	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3408)
DUF4658	PF15555.1	gi|379005777|ref|YP_005261448.1|	-	0.00062	19.6	0.2	0.0011	18.8	0.1	1.4	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF4658)
Pex14_N	PF04695.8	gi|379005777|ref|YP_005261448.1|	-	0.013	15.5	0.4	0.016	15.2	0.3	1.2	1	0	0	1	1	1	0	Peroxisomal	membrane	anchor	protein	(Pex14p)	conserved	region
DUF3753	PF12575.3	gi|379005777|ref|YP_005261448.1|	-	0.023	14.4	2.4	0.024	14.4	0.0	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3753)
Neur_chan_memb	PF02932.11	gi|379005777|ref|YP_005261448.1|	-	0.031	14.1	3.9	0.034	14.0	2.7	1.0	1	0	0	1	1	1	0	Neurotransmitter-gated	ion-channel	transmembrane	region
NPR2	PF06218.6	gi|379005777|ref|YP_005261448.1|	-	0.035	12.8	1.0	0.054	12.2	0.7	1.3	1	0	0	1	1	1	0	Nitrogen	permease	regulator	2
DUF2077	PF09850.4	gi|379005777|ref|YP_005261448.1|	-	0.052	12.9	1.4	0.065	12.6	0.0	1.7	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2077)
DUF485	PF04341.7	gi|379005777|ref|YP_005261448.1|	-	0.072	12.8	0.5	0.12	12.0	0.4	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF485
Podoplanin	PF05808.6	gi|379005777|ref|YP_005261448.1|	-	0.079	12.5	0.2	0.12	11.9	0.2	1.3	1	1	0	1	1	1	0	Podoplanin
M11L	PF11099.3	gi|379005777|ref|YP_005261448.1|	-	0.089	12.5	0.3	0.089	12.5	0.2	1.6	1	1	1	2	2	2	0	Apoptosis	regulator	M11L	like
DUF872	PF05915.7	gi|379005777|ref|YP_005261448.1|	-	0.16	11.8	0.9	0.29	11.0	0.6	1.6	1	1	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF872)
SAPS	PF04499.10	gi|379005777|ref|YP_005261448.1|	-	0.2	10.2	6.6	0.21	10.2	4.6	1.0	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
DUF2031	PF09592.5	gi|379005777|ref|YP_005261448.1|	-	0.22	10.6	15.5	0.26	10.4	10.7	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2031)
GLE1	PF07817.8	gi|379005777|ref|YP_005261448.1|	-	0.37	9.6	7.6	0.45	9.4	5.3	1.0	1	0	0	1	1	1	0	GLE1-like	protein
NARP1	PF12569.3	gi|379005777|ref|YP_005261448.1|	-	0.42	9.3	17.4	0.49	9.1	12.1	1.1	1	0	0	1	1	1	0	NMDA	receptor-regulated	protein	1
Ycf1	PF05758.7	gi|379005777|ref|YP_005261448.1|	-	1	7.0	17.8	1.1	6.8	12.3	1.0	1	0	0	1	1	1	0	Ycf1
Host_attach	PF10116.4	gi|379005777|ref|YP_005261448.1|	-	1.1	9.4	8.8	1.4	9.1	6.1	1.2	1	0	0	1	1	1	0	Protein	required	for	attachment	to	host	cells
Pox_RNA_Pol_19	PF05320.7	gi|379005777|ref|YP_005261448.1|	-	1.1	8.9	10.2	1.4	8.6	7.1	1.1	1	0	0	1	1	1	0	Poxvirus	DNA-directed	RNA	polymerase	19	kDa	subunit
MRVI1	PF05781.7	gi|379005777|ref|YP_005261448.1|	-	1.7	6.9	19.6	36	2.5	13.6	2.0	1	1	0	1	1	1	0	MRVI1	protein
DUF2146	PF10220.4	gi|379005777|ref|YP_005261448.1|	-	1.8	6.4	9.9	2	6.3	6.9	1.0	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2146)
RRN3	PF05327.6	gi|379005777|ref|YP_005261448.1|	-	2.1	6.3	6.9	2.4	6.1	4.7	1.1	1	0	0	1	1	1	0	RNA	polymerase	I	specific	transcription	initiation	factor	RRN3
SUFU_C	PF12470.3	gi|379005777|ref|YP_005261448.1|	-	2.1	7.8	6.0	2.5	7.6	4.2	1.1	1	0	0	1	1	1	0	Suppressor	of	Fused	Gli/Ci	N	terminal	binding	domain
RP-C_C	PF11800.3	gi|379005777|ref|YP_005261448.1|	-	2.7	7.6	8.8	3.2	7.3	6.1	1.2	1	0	0	1	1	1	0	Replication	protein	C	C-terminal	region
DUF912	PF06024.7	gi|379005777|ref|YP_005261448.1|	-	4.5	7.3	12.8	5.1e+02	0.7	8.9	2.2	1	1	0	1	1	1	0	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF912)
Chordopox_G3	PF06129.7	gi|379005777|ref|YP_005261448.1|	-	4.8	7.3	5.2	2.6	8.2	2.2	1.6	1	1	0	1	1	1	0	Chordopoxvirus	G3	protein
Vfa1	PF08432.5	gi|379005777|ref|YP_005261448.1|	-	4.8	7.1	23.1	7.1	6.6	16.0	1.3	1	0	0	1	1	1	0	AAA-ATPase	Vps4-associated	protein	1
PBP1_TM	PF14812.1	gi|379005777|ref|YP_005261448.1|	-	5	7.4	19.1	2e+02	2.3	13.3	2.2	1	1	0	1	1	1	0	Transmembrane	domain	of	transglycosylase	PBP1	at	N-terminal
Bud13	PF09736.4	gi|379005777|ref|YP_005261448.1|	-	5.3	7.2	21.0	6.5	7.0	14.5	1.1	1	0	0	1	1	1	0	Pre-mRNA-splicing	factor	of	RES	complex
FAM60A	PF15396.1	gi|379005777|ref|YP_005261448.1|	-	6.1	6.5	12.9	7.1	6.3	8.9	1.1	1	0	0	1	1	1	0	Protein	Family	FAM60A
TFIIF_alpha	PF05793.7	gi|379005777|ref|YP_005261448.1|	-	6.4	5.0	26.1	7.5	4.7	18.1	1.0	1	0	0	1	1	1	0	Transcription	initiation	factor	IIF,	alpha	subunit	(TFIIF-alpha)
BTV_NS2	PF04514.7	gi|379005777|ref|YP_005261448.1|	-	6.8	5.4	17.4	7.7	5.2	12.0	1.0	1	0	0	1	1	1	0	Bluetongue	virus	non-structural	protein	NS2
RNA_pol_Rpb1_1	PF04997.7	gi|379005777|ref|YP_005261448.1|	-	7.1	5.7	12.2	8.5	5.5	8.4	1.0	1	0	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	1
Potyvirid-P3	PF13608.1	gi|379005777|ref|YP_005261448.1|	-	7.4	5.5	14.5	8.9	5.3	10.0	1.1	1	0	0	1	1	1	0	Protein	P3	of	Potyviral	polyprotein
DUF2116	PF09889.4	gi|379005777|ref|YP_005261448.1|	-	9.1	6.1	8.8	0.19	11.5	0.6	2.1	2	1	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
Alb1	PF09135.6	gi|379005777|ref|YP_005261448.1|	-	9.5	6.8	23.0	12	6.6	15.9	1.1	1	0	0	1	1	1	0	Alb1
DUF913	PF06025.7	gi|379005777|ref|YP_005261448.1|	-	9.6	4.8	9.9	11	4.6	6.9	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF913)
CcmH	PF03918.9	gi|379005778|ref|YP_005261449.1|	-	0.085	11.8	1.1	0.24	10.3	0.0	2.1	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
Seryl_tRNA_N	PF02403.17	gi|379005778|ref|YP_005261449.1|	-	2.5	8.1	12.2	3	7.9	0.6	2.5	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
DUF445	PF04286.7	gi|379005779|ref|YP_005261450.1|	-	0.022	14.2	0.0	0.022	14.2	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF445)
TFIID_20kDa	PF03847.8	gi|379005779|ref|YP_005261450.1|	-	0.17	12.1	1.2	0.89	9.8	0.2	2.0	1	1	1	2	2	2	0	Transcription	initiation	factor	TFIID	subunit	A
AAA_10	PF12846.2	gi|379005780|ref|YP_005261451.1|	-	1.2e-11	44.6	0.0	1.7e-07	31.0	0.0	2.1	1	1	1	2	2	2	2	AAA-like	domain
AAA_22	PF13401.1	gi|379005780|ref|YP_005261451.1|	-	9.4e-08	32.2	0.0	1e-06	28.8	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|379005780|ref|YP_005261451.1|	-	1.4e-05	25.1	0.1	0.00013	21.9	0.1	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|379005780|ref|YP_005261451.1|	-	2.6e-05	24.5	0.4	0.00015	22.1	0.0	2.2	3	0	0	3	3	2	1	ABC	transporter
AAA_17	PF13207.1	gi|379005780|ref|YP_005261451.1|	-	9.5e-05	23.2	0.0	0.00019	22.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|379005780|ref|YP_005261451.1|	-	0.00013	21.9	0.3	0.0021	17.9	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|379005780|ref|YP_005261451.1|	-	0.0002	21.0	0.1	0.00034	20.2	0.0	1.3	1	0	0	1	1	1	1	NACHT	domain
Arch_ATPase	PF01637.13	gi|379005780|ref|YP_005261451.1|	-	0.00033	20.4	0.2	0.0022	17.7	0.0	2.1	2	0	0	2	2	2	1	Archaeal	ATPase
DUF853	PF05872.7	gi|379005780|ref|YP_005261451.1|	-	0.00078	17.9	0.1	0.021	13.1	0.0	2.1	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
MobB	PF03205.9	gi|379005780|ref|YP_005261451.1|	-	0.0012	18.5	0.0	0.0024	17.5	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ABC_ATPase	PF09818.4	gi|379005780|ref|YP_005261451.1|	-	0.0016	17.0	0.0	0.0021	16.7	0.0	1.2	1	0	0	1	1	1	1	Predicted	ATPase	of	the	ABC	class
AAA	PF00004.24	gi|379005780|ref|YP_005261451.1|	-	0.0024	18.0	0.0	0.0053	16.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_28	PF13521.1	gi|379005780|ref|YP_005261451.1|	-	0.0025	17.7	0.3	0.011	15.7	0.2	2.0	1	1	1	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|379005780|ref|YP_005261451.1|	-	0.0066	15.6	0.1	0.018	14.2	0.0	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
Miro	PF08477.8	gi|379005780|ref|YP_005261451.1|	-	0.01	16.3	0.0	0.02	15.3	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
UPF0079	PF02367.12	gi|379005780|ref|YP_005261451.1|	-	0.014	15.0	0.1	0.025	14.1	0.0	1.4	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_30	PF13604.1	gi|379005780|ref|YP_005261451.1|	-	0.014	14.9	0.0	0.023	14.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|379005780|ref|YP_005261451.1|	-	0.016	15.5	1.1	0.049	13.9	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|379005780|ref|YP_005261451.1|	-	0.029	14.1	0.0	0.058	13.1	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
Zot	PF05707.7	gi|379005780|ref|YP_005261451.1|	-	0.031	13.7	1.3	2.1	7.7	0.1	2.6	2	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
RNA_helicase	PF00910.17	gi|379005780|ref|YP_005261451.1|	-	0.033	14.3	0.0	0.059	13.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_25	PF13481.1	gi|379005780|ref|YP_005261451.1|	-	0.034	13.5	0.1	0.26	10.6	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|379005780|ref|YP_005261451.1|	-	0.034	13.6	0.0	0.067	12.7	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NB-ARC	PF00931.17	gi|379005780|ref|YP_005261451.1|	-	0.04	12.7	0.1	0.072	11.9	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_24	PF13479.1	gi|379005780|ref|YP_005261451.1|	-	0.046	13.3	0.1	0.089	12.3	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|379005780|ref|YP_005261451.1|	-	0.047	13.4	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	NTPase
MMR_HSR1	PF01926.18	gi|379005780|ref|YP_005261451.1|	-	0.047	13.6	0.0	0.077	12.9	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.4	gi|379005780|ref|YP_005261451.1|	-	0.049	13.1	0.0	0.092	12.2	0.0	1.4	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_18	PF13238.1	gi|379005780|ref|YP_005261451.1|	-	0.05	13.9	0.2	0.15	12.3	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|379005780|ref|YP_005261451.1|	-	0.055	12.8	0.0	0.094	12.1	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.9	gi|379005780|ref|YP_005261451.1|	-	0.058	13.1	0.1	0.14	11.8	0.0	1.7	2	0	0	2	2	1	0	AAA	domain	(dynein-related	subfamily)
GTP_EFTU	PF00009.22	gi|379005780|ref|YP_005261451.1|	-	0.072	12.5	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
Pox_A32	PF04665.7	gi|379005780|ref|YP_005261451.1|	-	0.076	12.3	0.1	0.19	10.9	0.0	1.7	2	1	0	2	2	2	0	Poxvirus	A32	protein
AAA_33	PF13671.1	gi|379005780|ref|YP_005261451.1|	-	0.096	12.5	0.1	0.17	11.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|379005780|ref|YP_005261451.1|	-	0.1	11.4	0.0	0.19	10.6	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
TLC	PF03219.9	gi|379005781|ref|YP_005261452.1|	-	0.0085	14.6	2.1	0.0093	14.4	1.5	1.0	1	0	0	1	1	1	1	TLC	ATP/ADP	transporter
ABC2_membrane_5	PF13346.1	gi|379005781|ref|YP_005261452.1|	-	0.031	13.5	3.0	0.037	13.3	2.0	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
DUF4064	PF13273.1	gi|379005781|ref|YP_005261452.1|	-	0.037	14.1	0.3	0.049	13.7	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4064)
AA_permease_C	PF13906.1	gi|379005781|ref|YP_005261452.1|	-	0.065	13.1	1.8	0.082	12.7	1.2	1.2	1	0	0	1	1	1	0	C-terminus	of	AA_permease
SDF	PF00375.13	gi|379005781|ref|YP_005261452.1|	-	0.07	11.8	2.5	0.072	11.8	1.7	1.0	1	0	0	1	1	1	0	Sodium:dicarboxylate	symporter	family
MerE	PF05052.7	gi|379005787|ref|YP_005261458.1|	-	0.51	10.3	2.7	0.28	11.1	0.5	1.6	2	0	0	2	2	2	0	MerE	protein
DUF3404	PF11884.3	gi|379005788|ref|YP_005261459.1|	-	0.054	12.3	0.0	0.064	12.1	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3404)
RST	PF12174.3	gi|379005789|ref|YP_005261460.1|	-	0.046	13.5	0.1	0.067	12.9	0.0	1.5	1	1	0	1	1	1	0	RCD1-SRO-TAF4	(RST)	plant	domain
NB	PF04159.8	gi|379005789|ref|YP_005261460.1|	-	0.11	12.1	0.1	0.15	11.7	0.1	1.3	1	0	0	1	1	1	0	NB	glycoprotein
VIT1	PF01988.14	gi|379005789|ref|YP_005261460.1|	-	0.12	11.8	1.7	0.15	11.5	1.1	1.2	1	0	0	1	1	1	0	VIT	family
HTH_23	PF13384.1	gi|379005790|ref|YP_005261461.1|	-	3.4e-09	36.0	0.2	1.9e-06	27.3	0.0	3.0	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_7	PF02796.10	gi|379005790|ref|YP_005261461.1|	-	1.2e-06	28.2	0.2	6.5e-06	25.9	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
Phage_integrase	PF00589.17	gi|379005790|ref|YP_005261461.1|	-	3.3e-06	26.8	0.0	0.00027	20.6	0.0	3.6	2	1	0	2	2	2	1	Phage	integrase	family
HTH_17	PF12728.2	gi|379005790|ref|YP_005261461.1|	-	1.1e-05	25.5	2.5	0.00014	22.0	0.1	3.2	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|379005790|ref|YP_005261461.1|	-	2.1e-05	23.9	0.0	0.00026	20.4	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|379005790|ref|YP_005261461.1|	-	8.1e-05	22.5	1.3	0.00027	20.8	0.0	2.5	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|379005790|ref|YP_005261461.1|	-	0.0002	21.4	5.4	0.008	16.3	0.1	3.7	2	1	1	4	4	3	1	Winged	helix-turn	helix
HTH_Tnp_1	PF01527.15	gi|379005790|ref|YP_005261461.1|	-	0.00027	20.8	0.0	0.00079	19.3	0.0	1.8	1	0	0	1	1	1	1	Transposase
DUF3071	PF11268.3	gi|379005790|ref|YP_005261461.1|	-	0.00034	20.3	3.3	0.00034	20.3	2.3	1.6	2	0	0	2	2	1	1	Protein	of	unknown	function	(DUF3071)
Sigma70_r4_2	PF08281.7	gi|379005790|ref|YP_005261461.1|	-	0.00044	19.6	0.4	0.0064	15.9	0.0	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_32	PF13565.1	gi|379005790|ref|YP_005261461.1|	-	0.00093	19.9	0.5	0.00093	19.9	0.3	4.1	4	1	1	5	5	4	1	Homeodomain-like	domain
Sigma70_ECF	PF07638.6	gi|379005790|ref|YP_005261461.1|	-	0.0011	18.7	1.9	0.004	16.8	0.0	2.5	2	1	1	3	3	3	1	ECF	sigma	factor
TetR_N	PF00440.18	gi|379005790|ref|YP_005261461.1|	-	0.0013	18.2	0.1	0.0028	17.2	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
HTH_31	PF13560.1	gi|379005790|ref|YP_005261461.1|	-	0.0036	17.4	0.3	0.012	15.7	0.1	2.0	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|379005790|ref|YP_005261461.1|	-	0.005	15.9	0.1	0.14	11.3	0.0	2.8	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Terminase_5	PF06056.7	gi|379005790|ref|YP_005261461.1|	-	0.0053	16.2	0.1	0.012	15.1	0.0	1.7	1	0	0	1	1	1	1	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_40	PF14493.1	gi|379005790|ref|YP_005261461.1|	-	0.0055	16.8	0.6	0.68	10.1	0.2	3.4	2	2	0	2	2	2	1	Helix-turn-helix	domain
HTH_22	PF13309.1	gi|379005790|ref|YP_005261461.1|	-	0.0057	16.3	0.0	0.031	14.0	0.0	2.4	1	1	0	1	1	1	1	HTH	domain
DUF1670	PF07900.6	gi|379005790|ref|YP_005261461.1|	-	0.006	15.8	0.1	0.012	14.8	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1670)
HTH_8	PF02954.14	gi|379005790|ref|YP_005261461.1|	-	0.0078	15.7	0.0	0.023	14.2	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
GerE	PF00196.14	gi|379005790|ref|YP_005261461.1|	-	0.0091	15.3	0.4	0.05	12.9	0.0	2.5	3	0	0	3	3	2	1	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.11	gi|379005790|ref|YP_005261461.1|	-	0.015	14.5	0.5	0.067	12.5	0.1	2.3	2	0	0	2	2	1	0	Sigma-70,	region	4
MerR_1	PF13411.1	gi|379005790|ref|YP_005261461.1|	-	0.018	14.7	1.0	3.3	7.5	0.0	3.8	4	0	0	4	4	4	0	MerR	HTH	family	regulatory	protein
HTH_3	PF01381.17	gi|379005790|ref|YP_005261461.1|	-	0.019	14.8	0.0	0.08	12.8	0.0	2.1	1	0	0	1	1	1	0	Helix-turn-helix
RepB	PF07506.6	gi|379005790|ref|YP_005261461.1|	-	0.028	14.2	0.0	2.7	7.8	0.0	3.0	3	0	0	3	3	3	0	RepB	plasmid	partitioning	protein
HTH_30	PF13556.1	gi|379005790|ref|YP_005261461.1|	-	0.03	13.9	0.0	0.2	11.2	0.0	2.4	2	0	0	2	2	2	0	PucR	C-terminal	helix-turn-helix	domain
HTH_AraC	PF00165.18	gi|379005790|ref|YP_005261461.1|	-	0.034	13.9	0.0	0.086	12.7	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
MerR	PF00376.18	gi|379005790|ref|YP_005261461.1|	-	0.038	13.5	4.2	0.22	11.1	0.0	3.0	3	0	0	3	3	3	0	MerR	family	regulatory	protein
HTH_11	PF08279.7	gi|379005790|ref|YP_005261461.1|	-	0.039	13.5	1.0	0.59	9.8	0.0	2.8	2	0	0	2	2	2	0	HTH	domain
Mga	PF05043.8	gi|379005790|ref|YP_005261461.1|	-	0.12	12.7	0.7	0.48	10.7	0.0	2.1	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
TrmB	PF01978.14	gi|379005790|ref|YP_005261461.1|	-	0.35	10.6	2.4	0.54	10.0	0.1	2.6	3	0	0	3	3	2	0	Sugar-specific	transcriptional	regulator	TrmB
End3	PF12761.2	gi|379005798|ref|YP_005261469.1|	-	0.0014	18.3	1.3	0.042	13.5	0.1	2.0	1	1	1	2	2	2	2	Actin	cytoskeleton-regulatory	complex	protein	END3
OpuAC	PF04069.7	gi|379005798|ref|YP_005261469.1|	-	0.031	13.6	0.1	0.034	13.4	0.1	1.2	1	0	0	1	1	1	0	Substrate	binding	domain	of	ABC-type	glycine	betaine	transport	system
FH2	PF02181.18	gi|379005798|ref|YP_005261469.1|	-	0.033	13.0	0.3	0.038	12.8	0.2	1.1	1	0	0	1	1	1	0	Formin	Homology	2	Domain
NEP	PF10167.4	gi|379005798|ref|YP_005261469.1|	-	0.038	13.6	0.4	0.043	13.5	0.2	1.1	1	0	0	1	1	1	0	Uncharacterised	conserved	protein
LXG	PF04740.7	gi|379005798|ref|YP_005261469.1|	-	0.1	12.3	2.1	0.12	12.1	1.4	1.0	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily