# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SAM_adeno_trans PF01887.16 gi|119871522|ref|YP_929529.1| - 1.1e-84 283.5 0.0 1.3e-84 283.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Molydop_binding PF01568.21 gi|119871522|ref|YP_929529.1| - 0.19 11.8 0.0 5.4 7.1 0.0 2.7 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain CarboxypepD_reg PF13620.6 gi|119871523|ref|YP_929530.1| - 0.0017 18.6 0.1 0.0035 17.6 0.1 1.5 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Epimerase PF01370.21 gi|119871524|ref|YP_929531.1| - 3.9e-18 65.8 0.0 5.4e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|119871524|ref|YP_929531.1| - 9.3e-11 41.3 0.0 2.3e-10 40.0 0.0 1.9 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|119871524|ref|YP_929531.1| - 1.3e-07 31.3 0.0 2.3e-06 27.3 0.0 2.2 1 1 1 2 2 2 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|119871524|ref|YP_929531.1| - 2.8e-05 23.4 0.0 0.00017 20.8 0.0 2.1 2 1 1 3 3 3 1 Male sterility protein 3Beta_HSD PF01073.19 gi|119871524|ref|YP_929531.1| - 3.4e-05 23.0 0.0 0.00075 18.6 0.0 2.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|119871524|ref|YP_929531.1| - 0.00083 19.3 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding OrfB_Zn_ribbon PF07282.11 gi|119871525|ref|YP_929532.1| - 1.3e-12 47.4 0.0 2.5e-12 46.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119871525|ref|YP_929532.1| - 0.00089 18.9 3.8 0.0018 17.9 3.8 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain RNHCP PF12647.7 gi|119871525|ref|YP_929532.1| - 0.0028 17.6 0.4 0.005 16.8 0.4 1.3 1 0 0 1 1 1 1 RNHCP domain zinc_ribbon_2 PF13240.6 gi|119871525|ref|YP_929532.1| - 0.013 15.2 2.7 0.046 13.4 2.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|119871525|ref|YP_929532.1| - 0.015 15.3 0.1 0.056 13.5 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|119871525|ref|YP_929532.1| - 0.023 15.3 0.3 0.057 14.1 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) FYVE PF01363.21 gi|119871525|ref|YP_929532.1| - 0.025 14.7 1.1 0.045 13.9 1.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.10 gi|119871525|ref|YP_929532.1| - 0.027 14.6 1.1 0.059 13.5 1.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|119871525|ref|YP_929532.1| - 0.032 14.3 0.4 0.054 13.5 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|119871525|ref|YP_929532.1| - 0.048 13.8 0.5 0.094 12.8 0.5 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc-ribbons_6 PF07191.12 gi|119871525|ref|YP_929532.1| - 0.049 13.6 0.6 0.079 12.9 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|119871525|ref|YP_929532.1| - 0.051 13.0 4.8 0.21 11.1 4.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119871525|ref|YP_929532.1| - 0.067 13.4 2.3 0.12 12.5 2.3 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|119871525|ref|YP_929532.1| - 0.086 11.6 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase C1_1 PF00130.22 gi|119871525|ref|YP_929532.1| - 0.11 12.4 0.2 0.19 11.6 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.6 gi|119871525|ref|YP_929532.1| - 0.17 11.9 2.4 0.63 10.0 2.4 2.0 1 1 0 1 1 1 0 Nudix N-terminal DNA_ligase_ZBD PF03119.16 gi|119871525|ref|YP_929532.1| - 0.21 11.6 2.5 6.3 6.9 0.4 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain CpXC PF14353.6 gi|119871525|ref|YP_929532.1| - 0.26 11.3 1.0 13 5.9 0.1 2.7 1 1 1 2 2 2 0 CpXC protein zf-HYPF PF07503.12 gi|119871525|ref|YP_929532.1| - 0.38 10.6 2.9 0.86 9.4 2.9 1.6 1 0 0 1 1 1 0 HypF finger zf-TFIIB PF13453.6 gi|119871525|ref|YP_929532.1| - 0.6 9.5 4.4 1.5 8.3 4.4 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger TF_Zn_Ribbon PF08271.12 gi|119871525|ref|YP_929532.1| - 0.62 9.6 2.8 0.72 9.4 0.1 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|119871525|ref|YP_929532.1| - 2.9 7.9 5.9 1.6 8.8 0.5 2.4 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger HTH_50 PF18024.1 gi|119871527|ref|YP_929534.1| - 0.017 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|119871527|ref|YP_929534.1| - 0.039 14.1 0.0 0.039 14.1 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Phage_CI_repr PF07022.13 gi|119871527|ref|YP_929534.1| - 0.042 13.9 0.0 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain NPV_P10 PF05531.12 gi|119871528|ref|YP_929535.1| - 0.049 14.1 0.5 0.25 11.8 0.4 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein ApoLp-III PF07464.11 gi|119871528|ref|YP_929535.1| - 0.06 13.4 0.2 11 6.1 0.1 2.2 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) FlgN PF05130.12 gi|119871528|ref|YP_929535.1| - 0.2 12.2 2.4 9 6.8 0.2 2.4 2 0 0 2 2 2 0 FlgN protein Zip PF02535.22 gi|119871529|ref|YP_929536.1| - 1.3e-15 57.5 8.0 1.3e-15 57.5 8.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter DUF1129 PF06570.11 gi|119871529|ref|YP_929536.1| - 3.3 7.2 5.8 1.8 8.0 0.2 2.3 1 1 1 3 3 3 0 Protein of unknown function (DUF1129) Band_7_1 PF13421.6 gi|119871530|ref|YP_929537.1| - 1.4e-30 106.6 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|119871530|ref|YP_929537.1| - 1.7e-17 64.0 0.1 2.3e-17 63.6 0.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.6 gi|119871530|ref|YP_929537.1| - 4.4e-15 54.8 16.1 9.6e-08 31.5 5.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119871530|ref|YP_929537.1| - 1.4e-11 44.2 12.6 2.1e-11 43.6 12.6 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119871530|ref|YP_929537.1| - 2.7e-07 29.8 15.9 0.00032 20.0 4.6 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-RanBP PF00641.18 gi|119871530|ref|YP_929537.1| - 3.5e-07 29.4 7.4 0.0035 16.6 1.7 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zinc_ribbon_15 PF17032.5 gi|119871530|ref|YP_929537.1| - 0.00016 22.4 7.9 0.075 13.8 0.4 2.4 2 1 0 2 2 2 2 zinc-ribbon family zf-tcix PF14952.6 gi|119871530|ref|YP_929537.1| - 0.00048 19.7 14.1 0.0042 16.7 2.6 2.3 1 1 1 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|119871530|ref|YP_929537.1| - 0.0023 17.7 10.6 0.0065 16.3 0.6 2.4 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HNH_repeat PF18780.1 gi|119871530|ref|YP_929537.1| - 0.011 15.5 0.0 0.011 15.5 0.0 1.8 2 0 0 2 2 1 0 Homing endonuclease repeat DHHC PF01529.20 gi|119871530|ref|YP_929537.1| - 0.046 13.8 5.8 1.6 8.9 0.3 2.4 1 1 1 2 2 2 0 DHHC palmitoyltransferase zf-TRM13_CCCH PF11722.8 gi|119871530|ref|YP_929537.1| - 0.096 12.5 4.9 4.8 7.0 1.5 2.3 1 1 1 2 2 2 0 CCCH zinc finger in TRM13 protein Nudix_N_2 PF14803.6 gi|119871530|ref|YP_929537.1| - 0.3 11.1 14.5 8.3 6.4 0.2 4.2 3 1 1 4 4 4 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|119871530|ref|YP_929537.1| - 0.38 10.7 8.7 2.2 8.3 1.3 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119871530|ref|YP_929537.1| - 0.42 10.3 7.9 5.3 6.8 0.2 3.8 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|119871530|ref|YP_929537.1| - 7.8 6.8 14.6 1.2 9.4 2.5 2.9 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1152 PF06626.12 gi|119871532|ref|YP_929539.1| - 2.4e-84 283.1 3.0 2.7e-84 282.9 3.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) TF_Zn_Ribbon PF08271.12 gi|119871534|ref|YP_929541.1| - 6.1e-07 28.9 1.4 1e-06 28.1 1.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|119871534|ref|YP_929541.1| - 0.00016 21.0 1.1 0.14 11.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119871534|ref|YP_929541.1| - 0.0031 17.5 0.7 0.0052 16.8 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|119871534|ref|YP_929541.1| - 0.011 15.6 0.6 0.074 13.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-CHCC PF10276.9 gi|119871534|ref|YP_929541.1| - 0.015 15.4 6.2 0.23 11.6 0.4 2.5 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_2 PF13240.6 gi|119871534|ref|YP_929541.1| - 0.033 13.9 8.0 0.39 10.5 8.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|119871534|ref|YP_929541.1| - 0.042 14.7 1.4 15 6.7 0.1 2.5 2 0 0 2 2 2 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|119871534|ref|YP_929541.1| - 0.075 13.0 0.5 0.13 12.2 0.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|119871534|ref|YP_929541.1| - 0.17 12.4 1.8 8.6 7.0 0.2 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|119871534|ref|YP_929541.1| - 0.2 12.0 3.0 13 6.2 0.2 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_CPXG PF14255.6 gi|119871534|ref|YP_929541.1| - 0.27 11.1 5.9 1.8 8.5 0.6 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-BED PF02892.15 gi|119871534|ref|YP_929541.1| - 0.29 11.2 1.1 3.8 7.6 0.1 2.2 1 1 1 2 2 2 0 BED zinc finger zf-RING_7 PF02591.15 gi|119871534|ref|YP_929541.1| - 0.31 11.3 2.7 4 7.7 0.4 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-H2C2_2 PF13465.6 gi|119871534|ref|YP_929541.1| - 0.34 11.4 3.0 14 6.3 0.6 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-Mss51 PF13824.6 gi|119871534|ref|YP_929541.1| - 0.65 10.1 1.9 1.1 9.4 1.9 1.4 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RRN7 PF11781.8 gi|119871534|ref|YP_929541.1| - 0.79 9.5 5.2 0.72 9.6 0.5 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prok-RING_1 PF14446.6 gi|119871534|ref|YP_929541.1| - 2.5 8.1 5.9 85 3.2 5.8 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 UPF0547 PF10571.9 gi|119871534|ref|YP_929541.1| - 2.8 8.1 6.0 6.7 6.9 0.4 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 zf_C2H2_6 PF18450.1 gi|119871534|ref|YP_929541.1| - 5.4 6.8 5.8 25 4.7 0.1 2.3 2 0 0 2 2 2 0 Zinc Finger domain Zn_Tnp_IS1595 PF12760.7 gi|119871534|ref|YP_929541.1| - 8.3 6.5 6.5 33 4.6 0.8 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119871535|ref|YP_929542.1| - 0.012 15.0 2.4 0.036 13.5 2.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119871535|ref|YP_929542.1| - 0.032 13.9 0.8 1.6 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RraA-like PF03737.15 gi|119871535|ref|YP_929542.1| - 0.057 13.6 0.2 0.11 12.6 0.2 1.6 1 0 0 1 1 1 0 Aldolase/RraA DZR PF12773.7 gi|119871535|ref|YP_929542.1| - 0.083 12.9 0.3 0.13 12.3 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-CHCC PF10276.9 gi|119871535|ref|YP_929542.1| - 1.1 9.4 3.2 7 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger domain zf-BED PF02892.15 gi|119871535|ref|YP_929542.1| - 2.7 8.1 3.7 3 7.9 0.2 2.2 1 1 1 2 2 2 0 BED zinc finger Aminotran_1_2 PF00155.21 gi|119871536|ref|YP_929543.1| - 2.8e-14 53.1 0.0 4.2e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II ATP_bind_3 PF01171.20 gi|119871537|ref|YP_929544.1| - 6.7e-12 45.5 0.0 1.9e-11 44.0 0.0 1.7 2 1 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|119871537|ref|YP_929544.1| - 0.001 17.9 0.2 0.003 16.4 0.2 1.7 1 1 0 1 1 1 1 tRNA methyl transferase RecR PF02132.15 gi|119871537|ref|YP_929544.1| - 0.0017 17.9 4.3 0.0049 16.4 1.2 2.6 2 0 0 2 2 2 1 RecR protein PAPS_reduct PF01507.19 gi|119871537|ref|YP_929544.1| - 0.0032 17.5 0.0 0.0057 16.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|119871537|ref|YP_929544.1| - 0.014 14.9 2.1 0.017 14.6 0.0 2.1 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|119871537|ref|YP_929544.1| - 0.052 13.2 0.0 0.074 12.7 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase Diphthami_syn_2 PF01902.17 gi|119871537|ref|YP_929544.1| - 0.073 12.6 0.1 0.14 11.7 0.1 1.5 1 1 0 1 1 1 0 Diphthamide synthase DUF5402 PF17393.2 gi|119871537|ref|YP_929544.1| - 0.11 12.4 0.1 0.52 10.3 0.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5402) zf-HIT PF04438.16 gi|119871537|ref|YP_929544.1| - 0.34 10.8 10.1 1.5 8.8 0.2 3.4 2 1 1 3 3 3 0 HIT zinc finger zn-ribbon_14 PF16503.5 gi|119871537|ref|YP_929544.1| - 2.4 7.8 6.6 0.57 9.7 2.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon zf-RRN7 PF11781.8 gi|119871537|ref|YP_929544.1| - 2.5 7.8 6.7 1.9 8.2 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 PTS_2-RNA PF01885.16 gi|119871538|ref|YP_929545.1| - 5e-25 88.6 0.0 6.2e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family PARP PF00644.20 gi|119871538|ref|YP_929545.1| - 0.0097 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase catalytic domain DUF4423 PF14394.6 gi|119871539|ref|YP_929546.1| - 0.028 14.1 2.9 0.18 11.5 1.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) YlbD_coat PF14071.6 gi|119871539|ref|YP_929546.1| - 0.17 12.1 1.3 0.53 10.5 0.9 1.9 1 1 1 2 2 2 0 Putative coat protein DASH_Dam1 PF08653.10 gi|119871539|ref|YP_929546.1| - 0.36 10.7 1.1 1.5 8.7 1.0 2.1 2 0 0 2 2 2 0 DASH complex subunit Dam1 Nup88 PF10168.9 gi|119871539|ref|YP_929546.1| - 0.43 8.3 3.9 0.62 7.8 3.9 1.2 1 0 0 1 1 1 0 Nuclear pore component Baculo_p24 PF05073.12 gi|119871539|ref|YP_929546.1| - 1.1 9.1 3.6 1.6 8.5 2.9 1.6 1 1 1 2 2 2 0 Baculovirus P24 capsid protein EspB PF05802.11 gi|119871539|ref|YP_929546.1| - 1.8 8.5 5.6 1 9.3 0.1 2.3 2 0 0 2 2 2 0 Enterobacterial EspB protein HTH_20 PF12840.7 gi|119871540|ref|YP_929547.1| - 2.5e-07 30.6 0.2 4.2e-07 29.9 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|119871540|ref|YP_929547.1| - 7.1e-07 28.7 0.0 1.3e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|119871540|ref|YP_929547.1| - 1.2e-06 28.2 0.2 2.4e-06 27.2 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119871540|ref|YP_929547.1| - 0.00018 21.3 0.1 0.0003 20.6 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|119871540|ref|YP_929547.1| - 0.00054 19.8 0.1 0.001 18.9 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|119871540|ref|YP_929547.1| - 0.0012 18.6 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|119871540|ref|YP_929547.1| - 0.0042 17.0 0.0 0.0066 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|119871540|ref|YP_929547.1| - 0.016 15.2 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|119871540|ref|YP_929547.1| - 0.12 12.8 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4366 PF14283.6 gi|119871540|ref|YP_929547.1| - 0.18 11.8 0.0 0.3 11.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4366) PGF-CTERM PF18204.1 gi|119871540|ref|YP_929547.1| - 3.3 7.8 8.0 6.3 6.9 8.0 1.5 1 0 0 1 1 1 0 PGF-CTERM motif Lactamase_B_3 PF13483.6 gi|119871541|ref|YP_929548.1| - 1.6e-08 34.6 0.0 2.9e-08 33.8 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119871541|ref|YP_929548.1| - 1.3e-06 28.5 1.6 2.7e-05 24.3 1.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119871541|ref|YP_929548.1| - 6.8e-06 25.7 0.1 2.1e-05 24.1 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.21 gi|119871542|ref|YP_929549.1| - 6.7e-27 94.9 0.0 2e-26 93.3 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily zinc_ribbon_2 PF13240.6 gi|119871542|ref|YP_929549.1| - 0.00033 20.3 4.6 0.25 11.1 0.5 2.7 2 0 0 2 2 2 2 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119871542|ref|YP_929549.1| - 0.00093 18.9 1.6 0.18 11.6 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DZR PF12773.7 gi|119871542|ref|YP_929549.1| - 0.0037 17.2 0.2 0.0037 17.2 0.2 2.5 3 0 0 3 3 2 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|119871542|ref|YP_929549.1| - 0.0043 16.7 3.5 0.28 10.9 0.1 2.7 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119871542|ref|YP_929549.1| - 0.059 13.3 0.7 0.16 11.9 0.7 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.16 gi|119871542|ref|YP_929549.1| - 0.11 12.5 5.1 0.61 10.2 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|119871542|ref|YP_929549.1| - 0.34 10.9 2.3 4.9 7.2 0.2 2.8 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|119871542|ref|YP_929549.1| - 0.76 9.3 12.3 0.88 9.1 0.3 3.3 4 0 0 4 4 4 0 zinc-ribbon domain PknG_rubred PF16919.5 gi|119871542|ref|YP_929549.1| - 0.81 9.8 6.6 0.074 13.2 1.4 1.8 2 0 0 2 2 2 0 Protein kinase G rubredoxin domain Zn-ribbon_8 PF09723.10 gi|119871542|ref|YP_929549.1| - 1.2 9.3 6.9 5 7.3 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119871542|ref|YP_929549.1| - 4.7 7.2 7.1 9.2 6.3 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|119871542|ref|YP_929549.1| - 6.8 6.3 5.5 12 5.5 0.9 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF4461 PF14688.6 gi|119871543|ref|YP_929550.1| - 0.097 12.5 0.0 0.1 12.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4461) NPCBM_assoc PF10633.9 gi|119871544|ref|YP_929551.1| - 0.0048 17.1 4.9 0.0082 16.4 0.0 3.9 4 0 0 4 4 4 1 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF11 PF01345.18 gi|119871544|ref|YP_929551.1| - 0.69 10.2 16.9 0.11 12.9 1.1 4.5 4 1 0 4 4 4 0 Domain of unknown function DUF11 FtsX PF02687.21 gi|119871545|ref|YP_929552.1| - 5.5e-16 58.8 0.8 5.5e-16 58.8 0.8 3.2 3 1 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|119871545|ref|YP_929552.1| - 6.9e-08 33.1 12.7 6.9e-08 33.1 12.7 2.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain DUF2273 PF10031.9 gi|119871545|ref|YP_929552.1| - 0.36 10.9 0.2 0.36 10.9 0.2 4.4 5 0 0 5 5 5 0 Small integral membrane protein (DUF2273) DUF389 PF04087.14 gi|119871545|ref|YP_929552.1| - 0.69 9.9 12.7 0.34 10.9 6.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF389) DUF2070 PF09843.9 gi|119871546|ref|YP_929553.1| - 2.1 6.6 21.0 2.5 6.3 21.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FA_desaturase PF00487.24 gi|119871546|ref|YP_929553.1| - 3.1 7.5 9.9 4.6 7.0 9.9 1.4 1 1 0 1 1 1 0 Fatty acid desaturase HTH_45 PF14947.6 gi|119871547|ref|YP_929554.1| - 1.9e-21 75.8 0.0 2.3e-21 75.6 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.9 gi|119871547|ref|YP_929554.1| - 0.025 15.1 0.0 0.037 14.6 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain TrmB PF01978.19 gi|119871547|ref|YP_929554.1| - 0.027 14.4 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.6 gi|119871547|ref|YP_929554.1| - 0.027 14.6 0.0 0.041 14.0 0.0 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain MarR_2 PF12802.7 gi|119871547|ref|YP_929554.1| - 0.069 13.0 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|119871547|ref|YP_929554.1| - 0.085 13.2 0.0 0.11 12.9 0.0 1.3 1 1 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|119871547|ref|YP_929554.1| - 0.092 13.3 0.1 0.22 12.1 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|119871547|ref|YP_929554.1| - 0.096 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal FtsK_gamma PF09397.10 gi|119871547|ref|YP_929554.1| - 0.12 12.2 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Ftsk gamma domain tRNA-synt_1d PF00750.19 gi|119871547|ref|YP_929554.1| - 0.13 11.2 0.0 0.13 11.1 0.0 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (R) SBP_bac_8 PF13416.6 gi|119871548|ref|YP_929555.1| - 5.4e-09 36.3 1.4 8.2e-08 32.4 0.0 2.2 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119871548|ref|YP_929555.1| - 6.4e-07 29.0 0.0 1.2e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Gram_pos_anchor PF00746.21 gi|119871548|ref|YP_929555.1| - 5.5 7.0 7.5 0.14 12.1 0.4 2.1 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Thiolase_N PF00108.23 gi|119871549|ref|YP_929556.1| - 5.2e-65 219.4 0.0 6.9e-65 219.0 0.0 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|119871549|ref|YP_929556.1| - 1.8e-47 160.0 1.6 9e-47 157.8 0.9 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|119871549|ref|YP_929556.1| - 2.9e-05 23.8 1.0 0.00037 20.2 0.1 2.6 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|119871549|ref|YP_929556.1| - 0.018 13.8 0.0 0.029 13.1 0.0 1.3 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Apocytochr_F_N PF16639.5 gi|119871549|ref|YP_929556.1| - 0.06 13.6 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Apocytochrome F, N-terminal DbpA PF03880.15 gi|119871549|ref|YP_929556.1| - 0.19 11.8 0.1 12 5.9 0.0 3.0 3 0 0 3 3 3 0 DbpA RNA binding domain Meth_synt_2 PF01717.18 gi|119871550|ref|YP_929557.1| - 8e-39 133.8 0.1 2.7e-24 86.1 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|119871550|ref|YP_929557.1| - 8.4e-05 22.2 0.9 0.033 13.7 0.0 2.7 3 0 0 3 3 3 2 Cobalamin-independent synthase, N-terminal domain Peptidase_M19 PF01244.21 gi|119871552|ref|YP_929559.1| - 2.8e-78 263.3 0.0 3.1e-78 263.1 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|119871552|ref|YP_929559.1| - 0.00045 20.1 0.0 0.00071 19.4 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase DUF4253 PF14062.6 gi|119871552|ref|YP_929559.1| - 0.04 14.1 0.0 0.089 13.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4253) PhoU PF01895.19 gi|119871553|ref|YP_929560.1| - 0.019 15.4 1.4 0.022 15.2 1.4 1.0 1 0 0 1 1 1 0 PhoU domain DUF892 PF05974.12 gi|119871553|ref|YP_929560.1| - 0.021 14.9 0.2 0.021 14.9 0.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF892) BPS1 PF05633.11 gi|119871553|ref|YP_929560.1| - 0.12 11.4 1.0 0.12 11.3 1.0 1.0 1 0 0 1 1 1 0 Protein BYPASS1-related Exonuc_VII_S PF02609.16 gi|119871553|ref|YP_929560.1| - 0.56 10.3 7.2 1.6 8.9 2.5 2.2 2 1 0 2 2 2 0 Exonuclease VII small subunit Radical_SAM PF04055.21 gi|119871554|ref|YP_929561.1| - 1.5e-13 51.5 0.0 2.1e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119871554|ref|YP_929561.1| - 1.3e-11 44.6 0.0 2e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119871554|ref|YP_929561.1| - 1.6e-09 38.2 0.0 2.4e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-CHCC PF10276.9 gi|119871554|ref|YP_929561.1| - 0.00079 19.4 0.4 0.00079 19.4 0.4 2.0 2 0 0 2 2 2 1 Zinc-finger domain DUF218 PF02698.17 gi|119871554|ref|YP_929561.1| - 0.077 13.0 0.0 0.93 9.5 0.0 2.0 2 0 0 2 2 2 0 DUF218 domain DUF4070 PF13282.6 gi|119871555|ref|YP_929562.1| - 0.04 14.0 0.1 0.053 13.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4070) UPF0051 PF01458.17 gi|119871556|ref|YP_929563.1| - 1.4e-45 155.7 0.2 1.8e-45 155.3 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|119871557|ref|YP_929564.1| - 2.9e-23 82.9 0.0 3.7e-23 82.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871557|ref|YP_929564.1| - 3.8e-11 43.4 0.8 2.6e-05 24.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871557|ref|YP_929564.1| - 3.4e-09 36.5 0.1 0.00038 20.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119871557|ref|YP_929564.1| - 0.00038 20.1 0.1 0.00075 19.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119871557|ref|YP_929564.1| - 0.00073 20.1 0.0 0.001 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119871557|ref|YP_929564.1| - 0.0013 18.6 0.0 0.2 11.3 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119871557|ref|YP_929564.1| - 0.019 14.9 0.3 0.036 14.0 0.3 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|119871557|ref|YP_929564.1| - 0.025 14.9 0.1 0.068 13.6 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|119871557|ref|YP_929564.1| - 0.066 13.6 0.1 0.26 11.7 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|119871557|ref|YP_929564.1| - 0.067 13.1 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MMR_HSR1 PF01926.23 gi|119871557|ref|YP_929564.1| - 0.12 12.5 0.1 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase Serine_rich PF08824.10 gi|119871557|ref|YP_929564.1| - 0.14 12.1 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Serine rich protein interaction domain AAA_27 PF13514.6 gi|119871557|ref|YP_929564.1| - 0.2 11.2 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain PadR PF03551.14 gi|119871558|ref|YP_929565.1| - 3.8e-15 55.6 0.0 6.5e-15 54.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|119871558|ref|YP_929565.1| - 0.026 12.9 0.0 0.028 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Mrr_N PF14338.6 gi|119871558|ref|YP_929565.1| - 0.044 13.9 0.1 0.14 12.3 0.1 1.8 1 0 0 1 1 1 0 Mrr N-terminal domain AphA_like PF14557.6 gi|119871558|ref|YP_929565.1| - 0.1 12.3 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator HTH_45 PF14947.6 gi|119871558|ref|YP_929565.1| - 0.14 12.1 0.2 0.73 9.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix FAA_hydrolase PF01557.18 gi|119871559|ref|YP_929566.1| - 5.6e-65 219.1 0.0 6.8e-65 218.8 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF4097 PF13349.6 gi|119871560|ref|YP_929567.1| - 0.0019 17.6 0.0 0.022 14.1 0.0 2.0 1 1 1 2 2 2 2 Putative adhesin ALAD PF00490.21 gi|119871562|ref|YP_929569.1| - 1.6e-140 467.8 0.0 1.8e-140 467.6 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Peptidase_S8 PF00082.22 gi|119871562|ref|YP_929569.1| - 0.098 11.9 0.1 0.17 11.1 0.1 1.3 1 0 0 1 1 1 0 Subtilase family HEPN_SAV_6107 PF18726.1 gi|119871562|ref|YP_929569.1| - 0.12 12.8 1.6 0.15 12.6 0.1 1.8 2 0 0 2 2 2 0 SAV_6107-like HEPN DUF655 PF04919.12 gi|119871562|ref|YP_929569.1| - 0.17 11.8 0.0 0.25 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF655) AsnC_trans_reg2 PF17805.1 gi|119871564|ref|YP_929571.1| - 5.6e-36 122.6 0.1 1.9e-18 66.4 0.0 2.5 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|119871564|ref|YP_929571.1| - 0.0001 22.1 0.1 0.25 11.2 0.0 3.3 3 0 0 3 3 3 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|119871564|ref|YP_929571.1| - 0.04 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PBP_like PF12727.7 gi|119871565|ref|YP_929572.1| - 7.9e-30 103.4 0.0 1.3e-29 102.8 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain HTH_1 PF00126.27 gi|119871565|ref|YP_929572.1| - 1.7e-13 50.3 0.5 9.5e-13 47.9 0.3 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LysR_substrate PF03466.20 gi|119871565|ref|YP_929572.1| - 6.9e-07 28.8 0.1 0.00046 19.6 0.2 2.3 1 1 1 2 2 2 2 LysR substrate binding domain HTH_8 PF02954.19 gi|119871565|ref|YP_929572.1| - 0.024 14.4 0.0 0.084 12.7 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Tnp_ISL3 PF13542.6 gi|119871565|ref|YP_929572.1| - 0.037 13.4 0.1 0.12 11.9 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|119871565|ref|YP_929572.1| - 0.038 13.8 0.1 0.14 12.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain HTH_psq PF05225.16 gi|119871565|ref|YP_929572.1| - 0.051 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DUF134 PF02001.16 gi|119871565|ref|YP_929572.1| - 0.15 12.7 0.1 0.35 11.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 PBP_like_2 PF12849.7 gi|119871566|ref|YP_929573.1| - 1.1e-19 71.2 0.0 1.4e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|119871566|ref|YP_929573.1| - 0.0034 16.5 0.0 0.0097 15.0 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain BPD_transp_1 PF00528.22 gi|119871567|ref|YP_929574.1| - 2.4e-10 40.4 11.1 3e-10 40.1 11.1 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component HTH_29 PF13551.6 gi|119871567|ref|YP_929574.1| - 0.39 10.8 0.1 0.39 10.8 0.1 2.2 3 0 0 3 3 3 0 Winged helix-turn helix ABC_tran PF00005.27 gi|119871568|ref|YP_929575.1| - 1e-24 87.6 0.0 1.3e-24 87.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871568|ref|YP_929575.1| - 1.7e-12 47.8 0.0 8.5e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871568|ref|YP_929575.1| - 5e-09 35.9 0.0 0.00042 19.8 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119871568|ref|YP_929575.1| - 9.7e-05 23.0 0.0 0.00015 22.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119871568|ref|YP_929575.1| - 0.00015 21.4 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|119871568|ref|YP_929575.1| - 0.00034 20.4 0.0 0.00044 20.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119871568|ref|YP_929575.1| - 0.00051 19.8 0.0 0.0022 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|119871568|ref|YP_929575.1| - 0.00056 20.2 0.0 0.0011 19.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|119871568|ref|YP_929575.1| - 0.0039 16.3 0.0 0.0049 16.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_5 PF07728.14 gi|119871568|ref|YP_929575.1| - 0.0044 17.0 0.0 0.0089 16.0 0.0 1.4 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119871568|ref|YP_929575.1| - 0.0057 17.1 0.0 0.015 15.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_27 PF13514.6 gi|119871568|ref|YP_929575.1| - 0.0089 15.6 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119871568|ref|YP_929575.1| - 0.01 16.0 0.0 0.036 14.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119871568|ref|YP_929575.1| - 0.013 15.9 0.0 0.017 15.5 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|119871568|ref|YP_929575.1| - 0.015 15.0 0.1 0.028 14.0 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|119871568|ref|YP_929575.1| - 0.016 15.0 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein NACHT PF05729.12 gi|119871568|ref|YP_929575.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|119871568|ref|YP_929575.1| - 0.023 14.9 0.0 0.057 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|119871568|ref|YP_929575.1| - 0.032 13.9 0.0 0.08 12.6 0.0 1.6 2 0 0 2 2 2 0 Thymidylate kinase ATPase_2 PF01637.18 gi|119871568|ref|YP_929575.1| - 0.036 14.0 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea cobW PF02492.19 gi|119871568|ref|YP_929575.1| - 0.038 13.6 0.1 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.6 gi|119871568|ref|YP_929575.1| - 0.04 14.1 0.1 0.43 10.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|119871568|ref|YP_929575.1| - 0.12 12.9 0.3 0.27 11.8 0.3 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|119871568|ref|YP_929575.1| - 0.14 10.8 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|119871568|ref|YP_929575.1| - 0.17 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF5464 PF17552.2 gi|119871568|ref|YP_929575.1| - 0.17 12.1 0.2 7.9 6.8 0.0 2.8 3 0 0 3 3 2 0 Family of unknown function (DUF5464) AAA_14 PF13173.6 gi|119871568|ref|YP_929575.1| - 0.19 11.8 0.0 0.39 10.7 0.0 1.5 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119871568|ref|YP_929575.1| - 0.2 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|119871568|ref|YP_929575.1| - 0.22 9.0 0.0 0.27 8.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.6 gi|119871568|ref|YP_929575.1| - 0.23 11.8 0.1 0.28 11.5 0.1 1.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119871568|ref|YP_929575.1| - 0.27 11.7 0.0 0.46 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|119871568|ref|YP_929575.1| - 0.28 10.9 0.0 0.43 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain HEPN PF05168.14 gi|119871569|ref|YP_929576.1| - 1.2e-05 25.4 0.1 4.6e-05 23.5 0.0 1.8 1 1 1 2 2 2 1 HEPN domain zf-CXXC PF02008.20 gi|119871569|ref|YP_929576.1| - 0.11 12.6 0.9 0.17 11.9 0.9 1.3 1 0 0 1 1 1 0 CXXC zinc finger domain Porphobil_deam PF01379.20 gi|119871570|ref|YP_929577.1| - 3e-66 222.8 0.0 3.6e-66 222.5 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|119871570|ref|YP_929577.1| - 1.8e-08 34.6 0.3 3.7e-08 33.6 0.3 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain SBP_bac_3 PF00497.20 gi|119871570|ref|YP_929577.1| - 0.025 14.0 0.0 0.05 13.0 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 Radical_SAM PF04055.21 gi|119871571|ref|YP_929578.1| - 1.6e-28 100.2 0.0 2.6e-28 99.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|119871571|ref|YP_929578.1| - 3.9e-10 40.1 0.1 9e-10 38.9 0.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|119871571|ref|YP_929578.1| - 2e-06 28.1 0.0 4e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119871571|ref|YP_929578.1| - 5.3e-06 26.6 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF402 PF04167.13 gi|119871572|ref|YP_929579.1| - 5.7e-10 39.2 0.2 1e-09 38.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|119871572|ref|YP_929579.1| - 0.00083 18.9 0.1 0.0012 18.3 0.1 1.2 1 0 0 1 1 1 1 Ribonuclease E/G family ATP-cone PF03477.16 gi|119871573|ref|YP_929580.1| - 3.6e-08 33.9 1.6 3.6e-08 33.9 1.6 1.4 1 1 1 2 2 2 1 ATP cone domain GHMP_kinases_N PF00288.26 gi|119871574|ref|YP_929581.1| - 1.1e-10 41.5 5.2 1.1e-10 41.5 5.2 2.4 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119871574|ref|YP_929581.1| - 7.2e-09 35.9 0.1 2.1e-08 34.4 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal AA_permease_2 PF13520.6 gi|119871575|ref|YP_929582.1| - 1.4e-33 116.4 38.6 1.8e-33 116.0 38.6 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|119871575|ref|YP_929582.1| - 1.2e-21 76.9 35.3 2.1e-21 76.1 35.3 1.3 1 1 0 1 1 1 1 Amino acid permease Glyco_trans_2_3 PF13632.6 gi|119871576|ref|YP_929583.1| - 2.3e-16 60.3 0.8 3.1e-16 59.9 0.8 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|119871576|ref|YP_929583.1| - 8.6e-10 38.9 0.2 1.9e-09 37.8 0.2 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|119871576|ref|YP_929583.1| - 0.00049 19.6 0.0 0.00086 18.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 ABC_tran PF00005.27 gi|119871577|ref|YP_929584.1| - 2.5e-15 57.2 0.0 3.8e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871577|ref|YP_929584.1| - 1.2e-08 35.2 0.0 6.8e-06 26.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871577|ref|YP_929584.1| - 6.9e-08 32.2 0.0 0.00027 20.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119871577|ref|YP_929584.1| - 1.3e-06 28.1 0.0 2.4e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119871577|ref|YP_929584.1| - 8.1e-06 26.5 0.0 1.1e-05 26.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119871577|ref|YP_929584.1| - 0.0011 18.8 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|119871577|ref|YP_929584.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119871577|ref|YP_929584.1| - 0.0019 18.5 0.0 0.0027 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|119871577|ref|YP_929584.1| - 0.005 16.8 0.1 0.0097 15.8 0.1 1.5 2 0 0 2 2 1 1 NACHT domain AAA_16 PF13191.6 gi|119871577|ref|YP_929584.1| - 0.0062 16.9 0.1 0.011 16.2 0.1 1.4 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119871577|ref|YP_929584.1| - 0.011 15.6 0.0 0.021 14.7 0.0 1.6 1 1 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|119871577|ref|YP_929584.1| - 0.019 14.5 0.1 0.026 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|119871577|ref|YP_929584.1| - 0.022 13.6 0.1 0.098 11.4 0.1 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class DUF3584 PF12128.8 gi|119871577|ref|YP_929584.1| - 0.066 10.7 0.1 0.088 10.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) cobW PF02492.19 gi|119871577|ref|YP_929584.1| - 0.076 12.6 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|119871577|ref|YP_929584.1| - 0.13 10.9 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119871577|ref|YP_929584.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|119871577|ref|YP_929584.1| - 0.15 11.7 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|119871577|ref|YP_929584.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|119871577|ref|YP_929584.1| - 0.2 12.0 0.0 0.38 11.1 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|119871577|ref|YP_929584.1| - 0.2 11.9 0.1 0.65 10.2 0.1 1.8 2 0 0 2 2 2 0 AAA domain Peripla_BP_2 PF01497.18 gi|119871579|ref|YP_929586.1| - 1.1e-26 93.9 0.0 1.6e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SBP_bac_11 PF13531.6 gi|119871579|ref|YP_929586.1| - 0.0047 16.7 0.3 0.017 14.9 0.1 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein QRPTase_C PF01729.19 gi|119871580|ref|YP_929587.1| - 2.6e-36 124.9 0.1 3.6e-36 124.5 0.1 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|119871580|ref|YP_929587.1| - 5e-21 74.5 0.6 5e-21 74.5 0.6 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF4240 PF14024.6 gi|119871580|ref|YP_929587.1| - 0.016 15.4 0.0 0.033 14.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4240) DUF4352 PF11611.8 gi|119871583|ref|YP_929590.1| - 9.7e-10 38.8 0.0 1.3e-08 35.2 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4352) DUF308 PF03729.13 gi|119871583|ref|YP_929590.1| - 0.058 13.7 15.7 0.13 12.6 15.7 1.7 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) Mtp PF03821.16 gi|119871583|ref|YP_929590.1| - 0.16 11.6 0.5 0.23 11.0 0.5 1.3 1 0 0 1 1 1 0 Golgi 4-transmembrane spanning transporter NTP_transf_2 PF01909.23 gi|119871584|ref|YP_929591.1| - 3.3e-07 30.5 0.0 3.6e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119871584|ref|YP_929591.1| - 0.00017 21.6 0.0 0.0002 21.4 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|119871584|ref|YP_929591.1| - 0.0062 16.3 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|119871585|ref|YP_929592.1| - 0.00047 20.3 0.0 0.00047 20.3 0.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF948 PF06103.11 gi|119871586|ref|YP_929593.1| - 0.00086 19.5 2.7 0.0029 17.8 2.7 1.8 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DUF2397 PF09660.10 gi|119871586|ref|YP_929593.1| - 0.0027 16.7 1.6 0.0032 16.5 1.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2397) TelA PF05816.11 gi|119871586|ref|YP_929593.1| - 0.0064 15.6 5.0 0.0076 15.4 4.6 1.3 1 1 0 1 1 1 1 Toxic anion resistance protein (TelA) Helo_like_N PF17111.5 gi|119871586|ref|YP_929593.1| - 0.0072 15.7 0.6 0.011 15.2 0.5 1.3 1 1 0 1 1 1 1 Fungal N-terminal domain of STAND proteins DUF1664 PF07889.12 gi|119871586|ref|YP_929593.1| - 0.013 15.5 1.5 0.017 15.1 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|119871586|ref|YP_929593.1| - 0.014 14.3 2.9 0.016 14.1 2.9 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein XhlA PF10779.9 gi|119871586|ref|YP_929593.1| - 0.014 15.6 2.4 0.031 14.5 2.4 1.7 1 0 0 1 1 1 0 Haemolysin XhlA Muted PF14942.6 gi|119871586|ref|YP_929593.1| - 0.014 15.8 1.3 0.017 15.5 0.7 1.3 1 1 0 1 1 1 0 Organelle biogenesis, Muted-like protein Laminin_II PF06009.12 gi|119871586|ref|YP_929593.1| - 0.015 15.3 2.0 0.015 15.3 2.0 1.6 1 1 0 1 1 1 0 Laminin Domain II Transcrip_act PF04949.13 gi|119871586|ref|YP_929593.1| - 0.015 15.1 2.7 0.02 14.8 2.7 1.2 1 0 0 1 1 1 0 Transcriptional activator LUC7 PF03194.15 gi|119871586|ref|YP_929593.1| - 0.017 14.8 0.4 0.02 14.6 0.4 1.1 1 0 0 1 1 1 0 LUC7 N_terminus ApoLp-III PF07464.11 gi|119871586|ref|YP_929593.1| - 0.021 14.9 1.9 0.037 14.1 1.8 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) HTH_AsnC-type PF13404.6 gi|119871586|ref|YP_929593.1| - 0.024 14.5 4.0 0.071 13.0 0.1 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain UPF0184 PF03670.13 gi|119871586|ref|YP_929593.1| - 0.024 15.0 1.3 0.044 14.2 1.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0184) DUF489 PF04356.12 gi|119871586|ref|YP_929593.1| - 0.027 14.5 1.3 0.036 14.1 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF489) FliJ PF02050.16 gi|119871586|ref|YP_929593.1| - 0.027 14.7 3.0 0.39 11.0 0.2 2.1 1 1 0 2 2 2 0 Flagellar FliJ protein NPV_P10 PF05531.12 gi|119871586|ref|YP_929593.1| - 0.031 14.7 4.2 0.095 13.2 4.3 2.0 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF16 PF01519.16 gi|119871586|ref|YP_929593.1| - 0.035 14.6 4.1 0.47 11.0 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|119871586|ref|YP_929593.1| - 0.041 14.2 5.6 1.2 9.5 0.6 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|119871586|ref|YP_929593.1| - 0.045 14.2 0.7 0.088 13.2 0.7 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) CorA PF01544.18 gi|119871586|ref|YP_929593.1| - 0.048 13.0 1.0 0.059 12.7 1.0 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein COG2 PF06148.11 gi|119871586|ref|YP_929593.1| - 0.048 13.7 1.2 0.072 13.2 0.4 1.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Baculo_PEP_C PF04513.12 gi|119871586|ref|YP_929593.1| - 0.049 13.7 2.9 0.081 13.0 2.9 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1043 PF06295.12 gi|119871586|ref|YP_929593.1| - 0.049 13.6 0.3 0.079 13.0 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) KxDL PF10241.9 gi|119871586|ref|YP_929593.1| - 0.053 13.8 3.8 0.25 11.6 3.6 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein Phage_GPO PF05929.11 gi|119871586|ref|YP_929593.1| - 0.067 12.8 1.7 0.075 12.6 1.7 1.0 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DASH_Dad4 PF08650.10 gi|119871586|ref|YP_929593.1| - 0.069 13.1 0.3 0.16 12.0 0.3 1.7 1 1 0 1 1 1 0 DASH complex subunit Dad4 Cauli_DNA-bind PF03310.13 gi|119871586|ref|YP_929593.1| - 0.074 13.1 1.7 0.23 11.5 0.7 1.9 1 1 1 2 2 2 0 Caulimovirus DNA-binding protein Atg14 PF10186.9 gi|119871586|ref|YP_929593.1| - 0.092 11.8 0.9 0.1 11.7 0.9 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4795 PF16043.5 gi|119871586|ref|YP_929593.1| - 0.14 11.7 5.4 0.23 11.0 5.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) TMF_DNA_bd PF12329.8 gi|119871586|ref|YP_929593.1| - 0.24 11.4 5.6 0.32 11.0 0.3 2.8 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding HSBP1 PF06825.12 gi|119871586|ref|YP_929593.1| - 1.7 8.5 10.0 23 4.9 7.4 3.1 2 1 0 2 2 2 0 Heat shock factor binding protein 1 Toxin_36 PF10550.9 gi|119871586|ref|YP_929593.1| - 6.1 8.5 5.8 8.7 8.0 1.0 3.2 2 0 0 2 2 2 0 Conantokin-G mollusc-toxin TMF_DNA_bd PF12329.8 gi|119871587|ref|YP_929594.1| - 4.8e-05 23.3 0.1 7e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding PspA_IM30 PF04012.12 gi|119871587|ref|YP_929594.1| - 0.019 14.6 0.1 0.024 14.2 0.1 1.1 1 0 0 1 1 1 0 PspA/IM30 family Filament PF00038.21 gi|119871587|ref|YP_929594.1| - 0.036 13.6 0.1 0.042 13.4 0.1 1.1 1 0 0 1 1 1 0 Intermediate filament protein Atg14 PF10186.9 gi|119871587|ref|YP_929594.1| - 0.045 12.8 0.2 0.045 12.8 0.2 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4618 PF15397.6 gi|119871587|ref|YP_929594.1| - 0.053 12.9 0.0 0.053 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) TSC22 PF01166.18 gi|119871587|ref|YP_929594.1| - 0.089 13.1 0.3 0.18 12.1 0.1 1.6 2 0 0 2 2 2 0 TSC-22/dip/bun family DivIC PF04977.15 gi|119871587|ref|YP_929594.1| - 0.092 12.5 0.3 0.14 12.0 0.3 1.5 1 0 0 1 1 1 0 Septum formation initiator Baculo_PEP_C PF04513.12 gi|119871587|ref|YP_929594.1| - 0.16 12.0 0.0 0.48 10.4 0.0 1.7 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus GP88 PF17338.2 gi|119871588|ref|YP_929595.1| - 2.5e-05 23.9 0.4 3.7e-05 23.3 0.4 1.4 1 0 0 1 1 1 1 Gene product 88 DUF4363 PF14276.6 gi|119871588|ref|YP_929595.1| - 0.0096 16.0 0.0 0.015 15.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4363) DUF5363 PF17320.2 gi|119871588|ref|YP_929595.1| - 0.081 12.8 0.2 0.23 11.4 0.2 1.8 1 0 0 1 1 1 0 Family of unknown function (DUF5363) AAA_5 PF07728.14 gi|119871589|ref|YP_929596.1| - 9.2e-16 58.1 0.0 9.4e-15 54.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119871589|ref|YP_929596.1| - 1.2e-07 32.2 0.0 2.8e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119871589|ref|YP_929596.1| - 1.4e-07 32.1 0.0 0.00016 22.1 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|119871589|ref|YP_929596.1| - 3.1e-06 27.5 0.0 0.00011 22.5 0.0 2.4 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119871589|ref|YP_929596.1| - 0.00011 22.0 0.0 0.0014 18.4 0.0 2.1 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|119871589|ref|YP_929596.1| - 0.00019 22.0 0.0 0.00036 21.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119871589|ref|YP_929596.1| - 0.00047 20.3 0.0 0.00087 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119871589|ref|YP_929596.1| - 0.00075 19.1 0.1 0.0071 15.9 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|119871589|ref|YP_929596.1| - 0.0019 18.0 0.0 0.23 11.4 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|119871589|ref|YP_929596.1| - 0.0023 17.7 0.0 0.0049 16.6 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|119871589|ref|YP_929596.1| - 0.0026 17.7 0.0 0.026 14.5 0.0 2.1 2 0 0 2 2 2 1 NACHT domain NTPase_1 PF03266.15 gi|119871589|ref|YP_929596.1| - 0.0056 16.6 0.1 0.096 12.6 0.0 2.7 2 1 1 3 3 3 1 NTPase AAA_24 PF13479.6 gi|119871589|ref|YP_929596.1| - 0.0078 15.9 0.0 0.024 14.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain ResIII PF04851.15 gi|119871589|ref|YP_929596.1| - 0.0093 16.0 0.1 3.2 7.7 0.0 2.8 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|119871589|ref|YP_929596.1| - 0.013 14.9 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|119871589|ref|YP_929596.1| - 0.013 15.8 0.0 0.073 13.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Roc PF08477.13 gi|119871589|ref|YP_929596.1| - 0.013 15.7 0.0 0.29 11.4 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|119871589|ref|YP_929596.1| - 0.015 14.9 0.0 0.032 13.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_14 PF13173.6 gi|119871589|ref|YP_929596.1| - 0.019 15.0 0.0 0.048 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119871589|ref|YP_929596.1| - 0.037 14.3 0.0 0.073 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|119871589|ref|YP_929596.1| - 0.044 13.6 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|119871589|ref|YP_929596.1| - 0.045 12.9 0.0 0.07 12.3 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|119871589|ref|YP_929596.1| - 0.048 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|119871589|ref|YP_929596.1| - 0.079 12.4 0.0 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein TsaE PF02367.17 gi|119871589|ref|YP_929596.1| - 0.1 12.6 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|119871589|ref|YP_929596.1| - 0.14 11.9 0.0 0.32 10.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|119871589|ref|YP_929596.1| - 0.15 11.3 0.0 0.31 10.3 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.6 gi|119871589|ref|YP_929596.1| - 0.15 11.8 0.0 0.39 10.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain McrBC PF10117.9 gi|119871590|ref|YP_929597.1| - 0.054 12.6 0.0 0.073 12.2 0.0 1.2 1 0 0 1 1 1 0 McrBC 5-methylcytosine restriction system component Hjc PF01870.18 gi|119871590|ref|YP_929597.1| - 0.11 12.5 0.2 1 9.4 0.0 2.7 4 0 0 4 4 4 0 Archaeal holliday junction resolvase (hjc) DUF1627 PF07789.12 gi|119871590|ref|YP_929597.1| - 0.14 11.8 0.0 0.66 9.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1627) DUF1418 PF07214.12 gi|119871591|ref|YP_929598.1| - 0.065 13.1 0.3 0.085 12.7 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) Metallophos PF00149.28 gi|119871593|ref|YP_929600.1| - 3.3e-15 57.1 1.3 5.6e-15 56.4 1.3 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase LPP PF04728.13 gi|119871594|ref|YP_929601.1| - 8.1e-06 26.1 12.8 0.0077 16.6 1.8 2.4 2 0 0 2 2 2 2 Lipoprotein leucine-zipper ABC_transp_aux PF09822.9 gi|119871594|ref|YP_929601.1| - 5.3e-05 22.8 0.0 0.00012 21.7 0.0 1.6 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PspA_IM30 PF04012.12 gi|119871594|ref|YP_929601.1| - 0.00091 18.9 3.9 0.0015 18.2 3.9 1.2 1 0 0 1 1 1 1 PspA/IM30 family Laminin_II PF06009.12 gi|119871594|ref|YP_929601.1| - 0.00097 19.2 2.5 0.0015 18.6 2.5 1.2 1 0 0 1 1 1 1 Laminin Domain II NPV_P10 PF05531.12 gi|119871594|ref|YP_929601.1| - 0.0011 19.4 5.0 0.0027 18.1 5.0 1.6 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|119871594|ref|YP_929601.1| - 0.0013 18.8 5.2 0.0023 18.0 5.2 1.4 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus ADIP PF11559.8 gi|119871594|ref|YP_929601.1| - 0.0023 18.0 0.7 0.0036 17.4 0.7 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding COG7 PF10191.9 gi|119871594|ref|YP_929601.1| - 0.0055 15.0 1.6 0.0078 14.5 1.6 1.1 1 0 0 1 1 1 1 Golgi complex component 7 (COG7) DUF1664 PF07889.12 gi|119871594|ref|YP_929601.1| - 0.006 16.6 1.7 0.014 15.4 1.5 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) DUF724 PF05266.14 gi|119871594|ref|YP_929601.1| - 0.0061 16.4 0.0 0.0089 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF724) HrpB7 PF09486.10 gi|119871594|ref|YP_929601.1| - 0.01 16.2 2.9 0.019 15.4 2.9 1.3 1 0 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) THOC7 PF05615.13 gi|119871594|ref|YP_929601.1| - 0.011 16.0 0.8 0.018 15.3 0.8 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 Spc7 PF08317.11 gi|119871594|ref|YP_929601.1| - 0.023 13.6 0.8 0.032 13.1 0.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Filament PF00038.21 gi|119871594|ref|YP_929601.1| - 0.027 14.0 1.8 0.039 13.5 1.8 1.1 1 0 0 1 1 1 0 Intermediate filament protein FlxA PF14282.6 gi|119871594|ref|YP_929601.1| - 0.039 13.9 1.7 0.064 13.3 1.7 1.2 1 0 0 1 1 1 0 FlxA-like protein GLE1 PF07817.13 gi|119871594|ref|YP_929601.1| - 0.044 13.0 0.8 0.31 10.2 0.8 2.0 2 0 0 2 2 2 0 GLE1-like protein BLOC1_2 PF10046.9 gi|119871594|ref|YP_929601.1| - 0.05 13.9 1.2 0.2 12.0 1.2 1.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|119871594|ref|YP_929601.1| - 0.063 13.8 0.5 0.12 12.9 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 Dynamitin PF04912.14 gi|119871594|ref|YP_929601.1| - 0.068 12.5 0.3 0.095 12.0 0.3 1.1 1 0 0 1 1 1 0 Dynamitin APG6_N PF17675.1 gi|119871594|ref|YP_929601.1| - 0.072 13.6 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region Allexi_40kDa PF05549.11 gi|119871594|ref|YP_929601.1| - 0.08 12.5 0.3 0.12 11.9 0.3 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF5082 PF16888.5 gi|119871594|ref|YP_929601.1| - 0.084 13.2 0.3 0.14 12.4 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) ZapB PF06005.12 gi|119871594|ref|YP_929601.1| - 0.097 13.1 0.8 0.29 11.6 0.8 1.8 1 1 0 1 1 1 0 Cell division protein ZapB DUF3450 PF11932.8 gi|119871594|ref|YP_929601.1| - 0.1 11.9 4.2 0.16 11.2 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) RasGAP_C PF03836.15 gi|119871594|ref|YP_929601.1| - 0.14 12.3 0.1 0.23 11.6 0.1 1.2 1 0 0 1 1 1 0 RasGAP C-terminus HsbA PF12296.8 gi|119871594|ref|YP_929601.1| - 0.14 12.6 9.8 0.45 10.9 9.8 1.8 1 1 0 1 1 1 0 Hydrophobic surface binding protein A IFT57 PF10498.9 gi|119871594|ref|YP_929601.1| - 0.15 11.0 0.6 0.2 10.6 0.6 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 CENP-F_leu_zip PF10473.9 gi|119871594|ref|YP_929601.1| - 0.16 12.0 0.3 0.24 11.4 0.3 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Seryl_tRNA_N PF02403.22 gi|119871594|ref|YP_929601.1| - 0.16 12.2 1.4 0.29 11.4 1.4 1.3 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.11 gi|119871594|ref|YP_929601.1| - 0.25 11.5 1.2 0.65 10.1 1.2 1.7 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Collagen_mid PF15984.5 gi|119871594|ref|YP_929601.1| - 0.48 10.1 7.2 0.83 9.4 7.2 1.3 1 0 0 1 1 1 0 Bacterial collagen, middle region DivIC PF04977.15 gi|119871594|ref|YP_929601.1| - 0.52 10.1 5.6 2 8.2 0.2 2.3 1 1 1 2 2 2 0 Septum formation initiator DUF948 PF06103.11 gi|119871594|ref|YP_929601.1| - 0.91 9.8 9.7 0.14 12.4 3.9 2.4 2 1 0 2 2 1 0 Bacterial protein of unknown function (DUF948) Uso1_p115_C PF04871.13 gi|119871594|ref|YP_929601.1| - 1.7 9.1 4.5 2.8 8.3 4.5 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF2730 PF10805.8 gi|119871594|ref|YP_929601.1| - 3.1 7.9 5.5 1.4 9.0 0.2 2.3 2 1 1 3 3 2 0 Protein of unknown function (DUF2730) TPR_MLP1_2 PF07926.12 gi|119871594|ref|YP_929601.1| - 5.3 7.1 7.6 6.4 6.9 0.9 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Alanine_zipper PF11839.8 gi|119871594|ref|YP_929601.1| - 6.8 7.1 16.9 7.3 7.0 7.2 2.6 1 1 0 2 2 2 0 Alanine-zipper, major outer membrane lipoprotein SBP_bac_6 PF13343.6 gi|119871595|ref|YP_929602.1| - 1.9e-19 70.0 0.2 3.3e-19 69.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119871595|ref|YP_929602.1| - 1.4e-18 67.7 1.7 1.4e-18 67.7 1.7 2.0 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119871595|ref|YP_929602.1| - 5.3e-17 62.7 4.9 5.3e-17 62.7 4.9 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119871595|ref|YP_929602.1| - 4.5e-05 23.3 0.7 4.5e-05 23.3 0.7 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|119871596|ref|YP_929603.1| - 4.8e-22 78.6 44.5 7.1e-13 48.7 7.6 3.9 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component Tmemb_170 PF10190.9 gi|119871596|ref|YP_929603.1| - 0.0009 19.6 0.1 0.0009 19.6 0.1 4.3 4 0 0 4 4 4 1 Putative transmembrane protein 170 SNARE_assoc PF09335.11 gi|119871596|ref|YP_929603.1| - 0.0013 19.2 3.5 0.0013 19.2 3.5 5.0 5 1 1 6 6 6 1 SNARE associated Golgi protein ABC_tran PF00005.27 gi|119871597|ref|YP_929604.1| - 5.5e-37 127.3 0.0 1.1e-36 126.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871597|ref|YP_929604.1| - 1.6e-07 31.4 0.2 0.0026 17.6 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119871597|ref|YP_929604.1| - 9.3e-07 28.9 0.2 7.2e-06 26.1 0.0 2.6 2 2 1 3 3 3 1 TOBE domain AAA_16 PF13191.6 gi|119871597|ref|YP_929604.1| - 0.00012 22.5 0.2 0.00026 21.4 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|119871597|ref|YP_929604.1| - 0.00022 21.2 0.0 0.00036 20.5 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|119871597|ref|YP_929604.1| - 0.0013 19.0 1.4 0.0059 16.9 1.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119871597|ref|YP_929604.1| - 0.0025 17.3 0.1 0.014 14.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|119871597|ref|YP_929604.1| - 0.0046 16.9 0.0 0.0071 16.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|119871597|ref|YP_929604.1| - 0.01 16.3 0.3 0.047 14.1 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CysA_C_terminal PF17850.1 gi|119871597|ref|YP_929604.1| - 0.013 16.0 0.2 0.037 14.6 0.2 1.8 1 1 0 1 1 1 0 CysA C-terminal regulatory domain RsgA_GTPase PF03193.16 gi|119871597|ref|YP_929604.1| - 0.016 15.1 0.0 0.045 13.7 0.0 1.7 2 0 0 2 2 1 0 RsgA GTPase AAA_14 PF13173.6 gi|119871597|ref|YP_929604.1| - 0.03 14.4 0.0 0.071 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain OB_MalK PF17912.1 gi|119871597|ref|YP_929604.1| - 0.036 14.9 0.1 0.18 12.7 0.1 2.3 1 0 0 1 1 1 0 MalK OB fold domain NACHT PF05729.12 gi|119871597|ref|YP_929604.1| - 0.056 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|119871597|ref|YP_929604.1| - 0.065 13.4 1.9 0.68 10.1 1.9 2.6 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119871597|ref|YP_929604.1| - 0.076 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|119871597|ref|YP_929604.1| - 0.13 12.5 0.1 0.39 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Ribosomal_S17 PF00366.20 gi|119871597|ref|YP_929604.1| - 0.14 12.3 0.0 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Ribosomal protein S17 ABC_ATPase PF09818.9 gi|119871597|ref|YP_929604.1| - 0.16 10.8 0.5 2.8 6.7 0.1 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|119871597|ref|YP_929604.1| - 0.17 11.0 0.0 0.32 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|119871597|ref|YP_929604.1| - 0.21 12.0 0.4 0.49 10.9 0.4 1.8 1 1 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|119871598|ref|YP_929605.1| - 1.2e-23 83.7 1.6 9.7e-23 80.7 1.6 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|119871598|ref|YP_929605.1| - 5.6e-17 61.8 0.4 1.3e-16 60.6 0.4 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|119871598|ref|YP_929605.1| - 1.1e-09 38.5 0.4 3e-09 37.1 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|119871598|ref|YP_929605.1| - 0.00096 19.1 0.1 0.0017 18.3 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|119871598|ref|YP_929605.1| - 0.023 14.7 0.0 0.064 13.3 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain DUF4235 PF14019.6 gi|119871598|ref|YP_929605.1| - 0.028 14.5 3.7 0.18 11.9 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4235) PduV-EutP PF10662.9 gi|119871598|ref|YP_929605.1| - 0.1 12.4 0.6 0.48 10.2 0.1 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NUDIX PF00293.28 gi|119871599|ref|YP_929606.1| - 1.6e-19 70.2 1.0 1.9e-19 70.0 1.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|119871599|ref|YP_929606.1| - 0.0054 16.7 0.2 0.02 14.9 0.2 1.8 1 1 0 1 1 1 1 NUDIX domain FtsX PF02687.21 gi|119871600|ref|YP_929607.1| - 5.7e-11 42.7 6.2 5.7e-11 42.7 6.2 2.6 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|119871600|ref|YP_929607.1| - 4.9e-08 33.6 4.0 4.9e-08 33.6 4.0 2.5 2 1 1 3 3 3 1 MacB-like periplasmic core domain ETF PF01012.21 gi|119871600|ref|YP_929607.1| - 0.89 9.4 6.8 7.5 6.4 1.2 2.4 2 0 0 2 2 2 0 Electron transfer flavoprotein domain CARDB PF07705.11 gi|119871601|ref|YP_929608.1| - 0.00052 20.2 0.3 0.03 14.6 0.0 3.1 3 0 0 3 3 3 1 CARDB TPPK_C PF12555.8 gi|119871601|ref|YP_929608.1| - 0.35 11.0 6.6 0.42 10.7 0.5 2.8 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal CbtA PF09490.10 gi|119871602|ref|YP_929609.1| - 8.3e-06 25.8 6.4 9.5e-06 25.5 6.4 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF4199 PF13858.6 gi|119871602|ref|YP_929609.1| - 0.00012 22.5 1.8 0.00063 20.2 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) DUF1761 PF08570.10 gi|119871602|ref|YP_929609.1| - 0.0017 18.6 4.0 0.0054 17.0 4.0 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1761) Romo1 PF10247.9 gi|119871602|ref|YP_929609.1| - 0.079 13.3 6.1 0.12 12.7 0.1 2.5 2 1 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 TraL PF07178.11 gi|119871602|ref|YP_929609.1| - 0.11 12.9 6.4 6.9 7.2 2.8 2.5 1 1 1 2 2 2 0 TraL protein EMP70 PF02990.16 gi|119871602|ref|YP_929609.1| - 0.13 10.8 1.0 0.14 10.8 1.0 1.1 1 0 0 1 1 1 0 Endomembrane protein 70 LMBR1 PF04791.16 gi|119871602|ref|YP_929609.1| - 0.15 10.9 2.5 0.22 10.4 2.5 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF1576 PF07613.11 gi|119871602|ref|YP_929609.1| - 0.17 11.4 6.1 1.8 8.0 0.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1576) DUF4064 PF13273.6 gi|119871602|ref|YP_929609.1| - 0.23 11.7 5.7 0.4 11.0 5.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) PspC PF04024.12 gi|119871602|ref|YP_929609.1| - 3.3 7.6 9.7 1.4 8.8 0.2 2.7 3 0 0 3 3 3 0 PspC domain TrbC PF04956.13 gi|119871602|ref|YP_929609.1| - 4.2 7.7 10.7 1.6 9.0 5.4 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family Radical_SAM PF04055.21 gi|119871604|ref|YP_929611.1| - 6.9e-20 72.1 0.0 2.3e-19 70.4 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.12 gi|119871604|ref|YP_929611.1| - 3.7e-19 68.9 0.0 7.2e-19 67.9 0.0 1.5 1 0 0 1 1 1 1 Wyosine base formation Carla_C4 PF01623.17 gi|119871604|ref|YP_929611.1| - 0.26 11.2 1.4 0.51 10.3 1.4 1.4 1 0 0 1 1 1 0 Carlavirus putative nucleic acid binding protein DUF973 PF06157.11 gi|119871605|ref|YP_929612.1| - 0.0043 16.1 0.1 0.0047 16.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Polbeta PF18765.1 gi|119871606|ref|YP_929613.1| - 7.2e-05 22.8 0.0 8.7e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|119871606|ref|YP_929613.1| - 0.0013 19.0 0.1 0.002 18.4 0.1 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain NUDIX PF00293.28 gi|119871607|ref|YP_929614.1| - 4.4e-20 72.0 1.5 5.5e-20 71.7 1.5 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|119871607|ref|YP_929614.1| - 0.0048 16.9 0.1 0.0065 16.5 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain ABC_tran PF00005.27 gi|119871608|ref|YP_929615.1| - 3.7e-31 108.5 0.0 5.1e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871608|ref|YP_929615.1| - 5e-12 46.2 2.1 4.7e-06 26.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|119871608|ref|YP_929615.1| - 0.00014 22.3 0.2 0.00025 21.5 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|119871608|ref|YP_929615.1| - 0.00057 19.7 0.0 0.76 9.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|119871608|ref|YP_929615.1| - 0.0063 16.2 0.1 0.01 15.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|119871608|ref|YP_929615.1| - 0.019 15.1 0.0 0.078 13.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119871608|ref|YP_929615.1| - 0.022 14.4 0.0 0.07 12.7 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|119871608|ref|YP_929615.1| - 0.023 14.1 0.7 4.5 6.6 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119871608|ref|YP_929615.1| - 0.025 15.1 0.0 0.038 14.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119871608|ref|YP_929615.1| - 0.055 13.2 0.4 3.6 7.3 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119871608|ref|YP_929615.1| - 0.058 13.7 0.0 0.15 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|119871608|ref|YP_929615.1| - 0.092 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119871608|ref|YP_929615.1| - 0.11 12.2 0.1 0.25 11.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119871608|ref|YP_929615.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|119871608|ref|YP_929615.1| - 0.2 11.4 0.2 0.46 10.2 0.1 1.7 2 0 0 2 2 2 0 MukB N-terminal PaREP1 PF05942.11 gi|119871610|ref|YP_929617.1| - 3e-34 117.4 3.8 3.8e-34 117.0 3.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Lyase_8_N PF08124.11 gi|119871610|ref|YP_929617.1| - 0.054 12.4 0.0 0.073 12.0 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain DUF357 PF04010.13 gi|119871610|ref|YP_929617.1| - 0.065 13.3 0.5 0.21 11.7 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF357) TauE PF01925.19 gi|119871611|ref|YP_929618.1| - 1.1e-06 28.5 16.4 1.4e-06 28.1 16.4 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE HTH_28 PF13518.6 gi|119871612|ref|YP_929619.1| - 3.7e-05 23.8 0.1 0.43 10.8 0.0 2.6 2 1 0 2 2 2 2 Helix-turn-helix domain TFIIB PF00382.19 gi|119871612|ref|YP_929619.1| - 0.0014 18.7 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 Transcription factor TFIIB repeat LZ_Tnp_IS481 PF13011.6 gi|119871612|ref|YP_929619.1| - 0.0022 18.5 0.0 0.0037 17.8 0.0 1.5 1 0 0 1 1 1 1 leucine-zipper of insertion element IS481 HTH_23 PF13384.6 gi|119871612|ref|YP_929619.1| - 0.0093 15.7 0.0 5.7 6.9 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain Rrf2 PF02082.20 gi|119871612|ref|YP_929619.1| - 0.029 14.7 0.0 3.8 7.9 0.0 2.6 3 0 0 3 3 3 0 Transcriptional regulator HTH_Tnp_1_2 PF13022.6 gi|119871612|ref|YP_929619.1| - 0.064 13.4 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase HTH_psq PF05225.16 gi|119871612|ref|YP_929619.1| - 0.073 12.8 0.2 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 helix-turn-helix, Psq domain HTH_7 PF02796.15 gi|119871612|ref|YP_929619.1| - 0.13 12.3 0.2 1.1 9.4 0.1 2.5 3 2 0 3 3 3 0 Helix-turn-helix domain of resolvase DUF1297 PF06973.12 gi|119871613|ref|YP_929620.1| - 5.8e-54 182.5 0.1 1.9e-53 180.8 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|119871613|ref|YP_929620.1| - 3.8e-37 127.0 0.0 5.8e-37 126.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) RimK PF08443.11 gi|119871613|ref|YP_929620.1| - 0.0014 18.3 0.0 0.0027 17.3 0.0 1.5 1 0 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|119871613|ref|YP_929620.1| - 0.028 13.9 0.0 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|119871613|ref|YP_929620.1| - 0.036 14.1 0.0 0.066 13.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain DUF1297 PF06973.12 gi|119871614|ref|YP_929621.1| - 2.7e-80 268.4 0.0 3.3e-80 268.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|119871614|ref|YP_929621.1| - 7e-46 155.2 0.0 1.1e-45 154.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GlutR_N PF05201.15 gi|119871615|ref|YP_929622.1| - 1.5e-27 96.2 0.5 3.8e-27 94.9 0.1 2.0 2 0 0 2 2 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|119871615|ref|YP_929622.1| - 3.3e-22 79.0 0.1 7.9e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|119871615|ref|YP_929622.1| - 4.2e-10 40.1 2.1 1.4e-09 38.4 0.2 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|119871615|ref|YP_929622.1| - 7.8e-06 26.1 0.9 9.1e-05 22.7 0.2 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|119871615|ref|YP_929622.1| - 3.5e-05 24.1 0.1 0.0001 22.6 0.1 1.8 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|119871615|ref|YP_929622.1| - 5.6e-05 22.5 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|119871615|ref|YP_929622.1| - 8e-05 22.1 0.7 0.00035 20.0 1.0 1.8 2 0 0 2 2 2 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|119871615|ref|YP_929622.1| - 0.00015 21.2 0.1 0.0018 17.6 0.1 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|119871615|ref|YP_929622.1| - 0.0002 21.3 1.8 0.00043 20.2 0.6 2.2 1 1 1 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.24 gi|119871615|ref|YP_929622.1| - 0.004 16.8 0.5 0.0073 15.9 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|119871615|ref|YP_929622.1| - 0.0043 17.0 0.1 0.023 14.7 0.1 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|119871615|ref|YP_929622.1| - 0.0077 15.9 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|119871615|ref|YP_929622.1| - 0.014 14.7 0.4 0.026 13.8 0.4 1.4 1 0 0 1 1 1 0 FAD binding domain NAD_binding_10 PF13460.6 gi|119871615|ref|YP_929622.1| - 0.016 15.1 0.4 0.032 14.1 0.4 1.6 1 0 0 1 1 1 0 NAD(P)H-binding Ldh_1_N PF00056.23 gi|119871615|ref|YP_929622.1| - 0.018 15.1 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain KR PF08659.10 gi|119871615|ref|YP_929622.1| - 0.027 14.4 0.8 0.069 13.1 0.1 2.0 3 0 0 3 3 3 0 KR domain Pyr_redox_2 PF07992.14 gi|119871615|ref|YP_929622.1| - 0.037 13.3 1.4 0.09 12.0 0.6 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Rho_N PF07498.12 gi|119871615|ref|YP_929622.1| - 0.22 11.5 1.9 0.45 10.5 0.2 2.1 2 0 0 2 2 2 0 Rho termination factor, N-terminal domain GlutR_dimer PF00745.20 gi|119871615|ref|YP_929622.1| - 4.5 7.8 10.4 0.7 10.4 3.2 3.2 3 1 0 3 3 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain PaREP1 PF05942.11 gi|119871616|ref|YP_929623.1| - 8.1e-26 90.2 1.2 1.2e-25 89.7 1.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ATP-grasp PF02222.22 gi|119871618|ref|YP_929625.1| - 1.5e-38 132.1 0.0 3.3e-38 131.0 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|119871618|ref|YP_929625.1| - 8e-16 57.5 0.0 1.6e-15 56.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain LAL_C2 PF18603.1 gi|119871618|ref|YP_929625.1| - 0.033 14.3 0.8 0.11 12.6 0.1 2.2 2 0 0 2 2 2 0 L-amino acid ligase C-terminal domain 2 AIRC PF00731.20 gi|119871619|ref|YP_929626.1| - 1.9e-63 212.5 1.0 2.1e-63 212.3 1.0 1.0 1 0 0 1 1 1 1 AIR carboxylase Endonuclease_5 PF04493.14 gi|119871619|ref|YP_929626.1| - 0.035 13.8 0.1 0.054 13.2 0.1 1.2 1 0 0 1 1 1 0 Endonuclease V DUF3025 PF11227.8 gi|119871619|ref|YP_929626.1| - 0.051 13.4 0.1 0.18 11.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3025) PrpR_N PF06506.11 gi|119871619|ref|YP_929626.1| - 0.062 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator Fes1 PF08609.10 gi|119871619|ref|YP_929626.1| - 0.18 12.7 0.5 0.53 11.2 0.1 1.8 2 0 0 2 2 2 0 Nucleotide exchange factor Fes1 Thi4 PF01946.17 gi|119871619|ref|YP_929626.1| - 0.24 10.6 2.3 8.4 5.6 0.2 2.8 2 1 1 3 3 3 0 Thi4 family AIRS PF00586.24 gi|119871620|ref|YP_929627.1| - 1e-43 147.9 0.5 1.3e-22 80.2 0.1 2.3 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|119871620|ref|YP_929627.1| - 6.7e-35 120.5 0.5 7.3e-22 78.2 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|119871620|ref|YP_929627.1| - 9.4e-11 42.1 0.1 1.8e-10 41.2 0.1 1.5 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_7 PF13537.6 gi|119871621|ref|YP_929628.1| - 4.7e-10 39.4 0.0 1.3e-09 38.0 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|119871621|ref|YP_929628.1| - 1.9e-08 34.6 0.0 3.9e-08 33.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|119871621|ref|YP_929628.1| - 0.01 15.4 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase domain DUF1931 PF09123.11 gi|119871621|ref|YP_929628.1| - 0.059 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1931) Formyl_trans_N PF00551.19 gi|119871622|ref|YP_929629.1| - 3.8e-31 108.2 0.0 5e-31 107.8 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase THF_DHG_CYH_C PF02882.19 gi|119871623|ref|YP_929630.1| - 1.1e-41 141.9 0.0 1.9e-41 141.1 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|119871623|ref|YP_929630.1| - 9.9e-24 83.8 0.0 2.2e-23 82.7 0.0 1.6 2 0 0 2 2 2 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SAICAR_synt PF01259.18 gi|119871624|ref|YP_929631.1| - 9.9e-43 146.6 0.0 1.2e-42 146.3 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase GARS_A PF01071.19 gi|119871625|ref|YP_929632.1| - 1.9e-36 125.7 0.0 2.7e-36 125.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|119871625|ref|YP_929632.1| - 1.1e-20 74.2 0.0 2.1e-20 73.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|119871625|ref|YP_929632.1| - 4.8e-12 46.0 0.1 2.6e-11 43.7 0.0 2.3 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.6 gi|119871625|ref|YP_929632.1| - 0.0003 20.4 0.2 0.00069 19.2 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|119871625|ref|YP_929632.1| - 0.00069 18.9 0.0 0.0059 15.9 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|119871625|ref|YP_929632.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PurS PF02700.14 gi|119871626|ref|YP_929633.1| - 1.9e-14 53.6 0.0 2.2e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase OAM_dimer PF16554.5 gi|119871626|ref|YP_929633.1| - 0.0097 16.3 0.0 0.044 14.2 0.0 1.8 1 1 1 2 2 2 1 Dimerisation domain of d-ornithine 4,5-aminomutase GATase_5 PF13507.6 gi|119871627|ref|YP_929634.1| - 4.4e-37 127.6 0.0 8.2e-28 97.2 0.0 2.0 1 1 1 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|119871627|ref|YP_929634.1| - 5.7e-08 32.7 0.0 7.1e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|119871627|ref|YP_929634.1| - 7.9e-08 32.1 0.0 1.2e-07 31.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|119871627|ref|YP_929634.1| - 8.4e-08 32.2 0.0 1.3e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|119871627|ref|YP_929634.1| - 0.0013 18.6 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 Pribosyltran PF00156.27 gi|119871628|ref|YP_929635.1| - 1.2e-13 50.9 0.4 1.9e-13 50.2 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPF0181 PF03701.14 gi|119871628|ref|YP_929635.1| - 0.1 12.3 0.9 0.28 10.8 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0181) AIRS_C PF02769.22 gi|119871629|ref|YP_929636.1| - 6.8e-15 55.5 1.2 1.5e-14 54.5 0.0 2.1 3 0 0 3 3 3 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119871629|ref|YP_929636.1| - 2.5e-12 47.3 1.0 5.7e-12 46.1 1.0 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain TetR_N PF00440.23 gi|119871630|ref|YP_929637.1| - 0.018 14.8 0.1 0.078 12.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family CbiX PF01903.17 gi|119871630|ref|YP_929637.1| - 0.056 13.8 0.0 3.1 8.2 0.0 2.8 3 0 0 3 3 3 0 CbiX HTH_23 PF13384.6 gi|119871630|ref|YP_929637.1| - 0.15 11.9 0.0 0.7 9.8 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain Radical_SAM PF04055.21 gi|119871632|ref|YP_929639.1| - 3.9e-14 53.4 0.0 7.5e-14 52.5 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119871632|ref|YP_929639.1| - 1.7e-06 28.4 0.0 3.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|119871632|ref|YP_929639.1| - 4.7e-06 27.0 0.0 1.7e-05 25.3 0.0 2.0 1 1 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|119871632|ref|YP_929639.1| - 0.00028 21.0 0.0 0.00049 20.2 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Dioxygenase_N PF04444.14 gi|119871632|ref|YP_929639.1| - 0.0075 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Catechol dioxygenase N terminus Aminotran_3 PF00202.21 gi|119871633|ref|YP_929640.1| - 3.4e-60 203.8 0.1 4e-60 203.6 0.1 1.1 1 0 0 1 1 1 1 Aminotransferase class-III TP_methylase PF00590.20 gi|119871634|ref|YP_929641.1| - 4e-47 160.9 0.2 4.6e-47 160.7 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AlaDh_PNT_C PF01262.21 gi|119871634|ref|YP_929641.1| - 0.031 13.6 0.0 0.066 12.5 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HEM4 PF02602.15 gi|119871635|ref|YP_929642.1| - 4.3e-17 62.2 2.4 5.7e-17 61.9 2.4 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF4605 PF15378.6 gi|119871635|ref|YP_929642.1| - 0.14 12.0 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4605) FdhD-NarQ PF02634.15 gi|119871635|ref|YP_929642.1| - 0.27 10.9 5.1 2.3 7.8 2.4 2.1 1 1 1 2 2 2 0 FdhD/NarQ family Flp1_like PF16982.5 gi|119871636|ref|YP_929643.1| - 0.002 17.5 3.8 0.0036 16.7 3.6 1.6 1 1 1 2 2 2 1 Putative Flagellin, Flp1-like, domain HTH_OrfB_IS605 PF12323.8 gi|119871637|ref|YP_929644.1| - 2.9e-05 23.5 1.6 3.7e-05 23.1 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain NAD_binding_7 PF13241.6 gi|119871638|ref|YP_929645.1| - 1.1e-19 70.7 0.1 1.9e-19 70.0 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|119871638|ref|YP_929645.1| - 1.2e-05 24.8 0.4 1.9e-05 24.1 0.0 1.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|119871638|ref|YP_929645.1| - 1.9e-05 24.1 0.0 3.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|119871638|ref|YP_929645.1| - 0.00013 21.6 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|119871638|ref|YP_929645.1| - 0.00035 20.3 0.0 0.00061 19.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Rossmann-like PF10727.9 gi|119871638|ref|YP_929645.1| - 0.00079 19.3 0.1 0.0017 18.2 0.1 1.5 1 1 0 1 1 1 1 Rossmann-like domain Shikimate_DH PF01488.20 gi|119871638|ref|YP_929645.1| - 0.001 19.1 0.0 0.0019 18.3 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.14 gi|119871638|ref|YP_929645.1| - 0.0026 17.0 0.1 0.0058 15.9 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|119871638|ref|YP_929645.1| - 0.0075 16.5 0.2 0.018 15.3 0.2 1.7 1 0 0 1 1 1 1 TrkA-N domain Pyr_redox PF00070.27 gi|119871638|ref|YP_929645.1| - 0.011 16.3 0.8 0.022 15.3 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|119871638|ref|YP_929645.1| - 0.018 15.0 0.2 0.13 12.3 0.2 2.2 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|119871638|ref|YP_929645.1| - 0.022 15.3 0.1 0.047 14.3 0.1 1.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CysG_dimeriser PF10414.9 gi|119871638|ref|YP_929645.1| - 0.063 13.0 0.2 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region FAD_binding_3 PF01494.19 gi|119871638|ref|YP_929645.1| - 0.065 12.5 0.1 0.1 11.8 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Semialdhyde_dh PF01118.24 gi|119871638|ref|YP_929645.1| - 0.1 13.0 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain OrfB_Zn_ribbon PF07282.11 gi|119871639|ref|YP_929646.1| - 2.8e-08 33.5 0.8 2.8e-08 33.5 0.8 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119871639|ref|YP_929646.1| - 2.6e-06 27.0 4.7 7.7e-06 25.5 4.0 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119871639|ref|YP_929646.1| - 0.00051 19.7 4.1 0.0023 17.6 4.1 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119871639|ref|YP_929646.1| - 0.0007 18.9 4.5 0.0075 15.7 4.5 2.3 1 1 0 1 1 1 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|119871639|ref|YP_929646.1| - 0.0011 18.9 1.5 0.2 11.7 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|119871639|ref|YP_929646.1| - 0.0018 18.3 1.7 0.0029 17.6 1.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon C1_1 PF00130.22 gi|119871639|ref|YP_929646.1| - 0.002 17.9 0.9 0.0041 17.0 0.9 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.6 gi|119871639|ref|YP_929646.1| - 0.003 17.4 1.2 0.0061 16.5 1.2 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Ogr_Delta PF04606.12 gi|119871639|ref|YP_929646.1| - 0.0078 16.2 5.3 0.13 12.3 0.3 2.6 2 1 1 3 3 2 1 Ogr/Delta-like zinc finger zf-tcix PF14952.6 gi|119871639|ref|YP_929646.1| - 0.01 15.4 1.6 2 8.1 0.1 2.4 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc-ribbons_6 PF07191.12 gi|119871639|ref|YP_929646.1| - 0.01 15.8 0.7 0.017 15.1 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.19 gi|119871639|ref|YP_929646.1| - 0.013 15.3 1.6 0.51 10.2 0.2 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|119871639|ref|YP_929646.1| - 0.014 16.0 4.4 1.1 10.0 3.7 3.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HypA PF01155.19 gi|119871639|ref|YP_929646.1| - 0.019 15.0 0.4 0.024 14.7 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Mss51 PF13824.6 gi|119871639|ref|YP_929646.1| - 0.024 14.8 1.7 0.068 13.3 1.4 1.9 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNHCP PF12647.7 gi|119871639|ref|YP_929646.1| - 0.039 13.9 0.8 0.071 13.1 0.8 1.4 1 0 0 1 1 1 0 RNHCP domain Cys_rich_KTR PF14205.6 gi|119871639|ref|YP_929646.1| - 0.041 13.7 0.7 2.2 8.2 0.1 2.3 2 0 0 2 2 2 0 Cysteine-rich KTR A2L_zn_ribbon PF08792.10 gi|119871639|ref|YP_929646.1| - 0.1 12.4 0.7 2.3 8.1 0.1 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Auto_anti-p27 PF06677.12 gi|119871639|ref|YP_929646.1| - 0.12 12.5 2.7 0.21 11.8 2.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PhnA_Zn_Ribbon PF08274.12 gi|119871639|ref|YP_929646.1| - 0.15 12.0 2.0 1 9.3 1.8 2.2 1 1 1 2 2 2 0 PhnA Zinc-Ribbon DUF1451 PF07295.11 gi|119871639|ref|YP_929646.1| - 0.2 11.7 2.9 0.36 10.8 2.6 1.5 1 1 1 2 2 2 0 Zinc-ribbon containing domain HscB_4_cys PF18256.1 gi|119871639|ref|YP_929646.1| - 0.21 11.4 6.1 0.96 9.3 2.1 2.6 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Zn-ribbon_8 PF09723.10 gi|119871639|ref|YP_929646.1| - 0.44 10.7 5.7 4.2 7.6 4.6 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|119871639|ref|YP_929646.1| - 0.46 10.5 9.4 4 7.5 6.8 3.0 2 1 1 3 3 3 0 Nudix N-terminal DUF1610 PF07754.11 gi|119871639|ref|YP_929646.1| - 0.83 9.7 4.8 8.7 6.4 2.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_RNApol_7kD PF03604.13 gi|119871639|ref|YP_929646.1| - 0.89 9.3 6.8 2.5 7.9 6.8 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Anti-TRAP PF15777.5 gi|119871639|ref|YP_929646.1| - 0.92 9.5 5.4 4.3 7.4 5.4 2.1 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-IS66 PF13005.7 gi|119871639|ref|YP_929646.1| - 1.7 9.1 8.3 3 8.3 0.5 3.0 2 1 2 4 4 4 0 zinc-finger binding domain of transposase IS66 NOB1_Zn_bind PF08772.11 gi|119871639|ref|YP_929646.1| - 1.8 8.8 5.3 2.2 8.5 0.5 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-TFIIB PF13453.6 gi|119871639|ref|YP_929646.1| - 4.5 6.7 8.4 0.42 10.0 3.1 2.1 2 1 0 2 2 1 0 Transcription factor zinc-finger RNA_POL_M_15KD PF02150.16 gi|119871639|ref|YP_929646.1| - 7.5 6.5 6.9 11 5.9 4.3 2.6 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit F420_oxidored PF03807.17 gi|119871640|ref|YP_929647.1| - 0.0066 17.0 0.0 0.013 16.1 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent H2O2_YaaD PF03883.14 gi|119871640|ref|YP_929647.1| - 0.0069 15.9 0.0 0.0079 15.7 0.0 1.1 1 0 0 1 1 1 1 Peroxide stress protein YaaA BacA PF02673.18 gi|119871641|ref|YP_929648.1| - 2.1e-40 139.1 20.7 2.4e-40 138.9 20.7 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA BppL_N PF18338.1 gi|119871641|ref|YP_929648.1| - 0.089 12.6 0.0 1.6 8.6 0.0 2.4 2 0 0 2 2 2 0 Lower baseplate protein N-terminal domain Vut_1 PF02592.15 gi|119871642|ref|YP_929649.1| - 8e-28 97.6 9.3 8e-28 97.6 9.3 1.8 2 0 0 2 2 2 1 Putative vitamin uptake transporter FimA PF16970.5 gi|119871642|ref|YP_929649.1| - 0.013 15.7 0.1 0.023 14.9 0.1 1.4 1 0 0 1 1 1 0 Type-1 fimbrial protein, A IGPS PF00218.21 gi|119871643|ref|YP_929650.1| - 6.2e-52 176.3 0.0 7.1e-52 176.1 0.0 1.1 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|119871643|ref|YP_929650.1| - 0.00066 19.2 0.0 0.0023 17.4 0.0 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|119871643|ref|YP_929650.1| - 0.0042 16.2 0.2 0.0097 15.0 0.2 1.7 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Cation_efflux PF01545.21 gi|119871644|ref|YP_929651.1| - 1.7e-30 106.3 11.7 2e-30 106.0 11.7 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|119871644|ref|YP_929651.1| - 2.2e-20 72.6 2.2 3.4e-20 72.0 2.2 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF5134 PF17197.4 gi|119871644|ref|YP_929651.1| - 1.3 8.9 5.9 2.2 8.1 5.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5134) Phage_holin_3_6 PF07332.11 gi|119871645|ref|YP_929652.1| - 1e-05 25.5 0.6 1.3e-05 25.2 0.6 1.2 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III MFS_1 PF07690.16 gi|119871645|ref|YP_929652.1| - 0.0003 19.8 0.5 0.00035 19.6 0.5 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF4131 PF13567.6 gi|119871645|ref|YP_929652.1| - 0.016 14.9 0.3 0.016 14.8 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) GST_C_2 PF13410.6 gi|119871645|ref|YP_929652.1| - 0.051 13.6 5.4 0.17 11.9 0.7 2.5 1 1 1 2 2 2 0 Glutathione S-transferase, C-terminal domain DUF1072 PF06380.11 gi|119871645|ref|YP_929652.1| - 0.089 12.7 0.2 0.089 12.7 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1072) DUF4307 PF14155.6 gi|119871645|ref|YP_929652.1| - 0.096 12.5 2.4 2.3 8.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF4574 PF15141.6 gi|119871645|ref|YP_929652.1| - 0.25 11.3 1.1 0.34 10.9 0.0 1.8 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 Halogen_Hydrol PF10112.9 gi|119871645|ref|YP_929652.1| - 1.3 9.0 3.3 2.3 8.2 3.3 1.4 1 1 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2613 PF11021.8 gi|119871645|ref|YP_929652.1| - 2 8.6 7.5 12 6.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) T2SSM PF04612.12 gi|119871645|ref|YP_929652.1| - 2.5 8.2 4.8 12 5.9 0.1 2.1 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M HemY_N PF07219.13 gi|119871645|ref|YP_929652.1| - 8.3 6.7 7.9 11 6.3 7.2 1.6 1 1 1 2 2 2 0 HemY protein N-terminus Na_Ca_ex PF01699.24 gi|119871646|ref|YP_929653.1| - 5.3e-15 55.7 24.6 5.7e-09 36.1 7.4 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein ZnuA PF01297.17 gi|119871647|ref|YP_929654.1| - 1.4e-05 24.6 0.0 4.9e-05 22.9 0.0 1.8 1 1 0 1 1 1 1 Zinc-uptake complex component A periplasmic MEDS PF14417.6 gi|119871647|ref|YP_929654.1| - 0.0094 15.8 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Glyco_transf_8 PF01501.20 gi|119871647|ref|YP_929654.1| - 0.043 13.4 0.1 0.59 9.6 0.1 2.2 2 0 0 2 2 2 0 Glycosyl transferase family 8 BssS PF13991.6 gi|119871647|ref|YP_929654.1| - 0.098 12.7 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 BssS protein family CTP_synth_N PF06418.14 gi|119871647|ref|YP_929654.1| - 0.12 11.7 0.4 1.1 8.5 0.0 2.1 2 0 0 2 2 2 0 CTP synthase N-terminus Trp_oprn_chp PF09534.10 gi|119871647|ref|YP_929654.1| - 0.23 11.2 10.9 0.08 12.7 5.5 2.4 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Gram_pos_anchor PF00746.21 gi|119871647|ref|YP_929654.1| - 5.7 7.0 10.2 0.51 10.3 0.7 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif PaREP1 PF05942.11 gi|119871648|ref|YP_929655.1| - 3.1e-12 46.4 0.4 4e-12 46.1 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DrsE PF02635.15 gi|119871649|ref|YP_929656.1| - 1.6e-13 51.0 0.0 1.8e-13 50.9 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Dioxygenase_N PF04444.14 gi|119871649|ref|YP_929656.1| - 0.076 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Catechol dioxygenase N terminus Hydantoinase_B PF02538.14 gi|119871650|ref|YP_929657.1| - 1.7e-175 584.3 0.2 2e-175 584.2 0.2 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|119871651|ref|YP_929658.1| - 7.5e-97 324.1 5.8 3.8e-96 321.8 2.6 2.2 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|119871651|ref|YP_929658.1| - 1.6e-46 158.3 0.0 3.3e-46 157.2 0.0 1.6 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|119871651|ref|YP_929658.1| - 0.0089 15.5 0.1 0.51 9.8 0.0 2.2 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family TetR_C_34 PF17929.1 gi|119871651|ref|YP_929658.1| - 0.078 13.1 0.4 0.16 12.1 0.4 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MutL PF13941.6 gi|119871651|ref|YP_929658.1| - 0.3 9.6 3.0 7.1 5.1 0.4 2.6 2 1 1 3 3 3 0 MutL protein MFS_1 PF07690.16 gi|119871652|ref|YP_929659.1| - 2.9e-12 46.2 34.9 2.3e-08 33.4 19.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MMgT PF10270.9 gi|119871652|ref|YP_929659.1| - 0.17 12.2 0.9 2.8 8.3 0.0 2.3 2 0 0 2 2 2 0 Membrane magnesium transporter DUF4231 PF14015.6 gi|119871652|ref|YP_929659.1| - 0.23 11.9 0.3 0.23 11.9 0.3 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF4231) OrfB_Zn_ribbon PF07282.11 gi|119871653|ref|YP_929660.1| - 8.3e-20 70.5 0.0 1.5e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|119871653|ref|YP_929660.1| - 0.026 14.7 1.8 0.043 14.0 1.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PucR PF07905.11 gi|119871653|ref|YP_929660.1| - 0.076 13.3 0.0 8.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family zf-NADH-PPase PF09297.11 gi|119871653|ref|YP_929660.1| - 0.094 12.4 4.2 0.19 11.4 4.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119871653|ref|YP_929660.1| - 0.098 12.1 1.9 9.9 5.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|119871653|ref|YP_929660.1| - 0.28 11.5 4.6 1.6 9.1 0.3 2.4 1 1 1 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|119871653|ref|YP_929660.1| - 1.5 9.0 5.1 3.2 8.0 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119871653|ref|YP_929660.1| - 3.4 7.5 4.7 21 5.0 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|119871653|ref|YP_929660.1| - 3.8 7.5 4.4 6.8 6.7 0.2 2.8 2 1 1 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119871653|ref|YP_929660.1| - 6.2 6.9 5.8 51 4.0 0.4 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Sugar_tr PF00083.24 gi|119871654|ref|YP_929661.1| - 3.8e-07 29.3 1.8 4.3e-07 29.2 1.8 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|119871654|ref|YP_929661.1| - 0.0019 17.2 14.3 0.0019 17.2 14.3 1.6 1 1 1 2 2 2 1 Major Facilitator Superfamily DUF1275 PF06912.11 gi|119871654|ref|YP_929661.1| - 0.019 14.9 8.3 0.72 9.7 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1275) FtsX PF02687.21 gi|119871654|ref|YP_929661.1| - 0.078 13.5 6.7 0.51 10.8 2.1 2.2 2 0 0 2 2 2 0 FtsX-like permease family EpsG PF14897.6 gi|119871656|ref|YP_929663.1| - 9.5 5.4 10.0 0.28 10.4 3.9 1.5 2 0 0 2 2 2 0 EpsG family Glycos_transf_2 PF00535.26 gi|119871657|ref|YP_929664.1| - 2.7e-21 76.1 0.0 4.2e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|119871657|ref|YP_929664.1| - 1e-07 32.4 0.2 2.1e-07 31.4 0.2 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.6 gi|119871657|ref|YP_929664.1| - 6.2e-07 29.9 0.0 1.2e-06 28.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119871657|ref|YP_929664.1| - 0.0039 17.1 0.0 0.0061 16.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF4875 PF16175.5 gi|119871658|ref|YP_929665.1| - 0.013 15.6 0.0 0.017 15.2 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4875) Glyco_trans_1_4 PF13692.6 gi|119871660|ref|YP_929667.1| - 4.1e-18 66.1 0.1 6.8e-18 65.4 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|119871660|ref|YP_929667.1| - 7.8e-15 54.8 0.0 1.9e-13 50.4 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119871660|ref|YP_929667.1| - 5.5e-10 39.5 3.2 8.9e-10 38.8 0.6 2.4 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119871660|ref|YP_929667.1| - 4.1e-06 27.3 3.7 4.1e-06 27.3 3.7 2.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glu_synthase PF01645.17 gi|119871661|ref|YP_929668.1| - 1.9e-22 79.9 10.2 2.7e-21 76.1 10.0 2.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|119871661|ref|YP_929668.1| - 5.2e-21 75.0 6.3 7.9e-16 58.0 1.9 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase NMO PF03060.15 gi|119871661|ref|YP_929668.1| - 4.2e-07 29.7 0.7 6.8e-07 29.0 0.7 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase IMPDH PF00478.25 gi|119871661|ref|YP_929668.1| - 0.22 10.5 2.5 0.18 10.8 0.8 1.8 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain GATase_6 PF13522.6 gi|119871662|ref|YP_929669.1| - 4.9e-13 49.4 0.0 6.3e-13 49.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|119871662|ref|YP_929669.1| - 8.9e-12 44.5 0.0 6.1e-07 28.6 0.0 3.0 3 0 0 3 3 3 3 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|119871662|ref|YP_929669.1| - 0.012 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferase domain Gln-synt_C PF00120.24 gi|119871663|ref|YP_929670.1| - 2.6e-101 339.1 0.0 3.8e-101 338.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|119871663|ref|YP_929670.1| - 2.5e-09 36.7 0.0 4.4e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain DUF87 PF01935.17 gi|119871664|ref|YP_929671.1| - 6.1e-08 33.0 0.2 1.3e-07 31.9 0.2 1.5 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|119871664|ref|YP_929671.1| - 1.2e-07 32.1 0.3 0.00012 22.4 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|119871664|ref|YP_929671.1| - 0.00036 20.6 0.0 0.87 9.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain CobU PF02283.16 gi|119871664|ref|YP_929671.1| - 0.00037 20.1 0.1 0.013 15.0 0.0 2.3 2 0 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase_2 PF01637.18 gi|119871664|ref|YP_929671.1| - 0.00057 19.9 1.0 0.073 13.0 0.0 2.3 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea Exonuc_VII_S PF02609.16 gi|119871664|ref|YP_929671.1| - 0.019 15.0 0.1 0.045 13.8 0.1 1.6 1 0 0 1 1 1 0 Exonuclease VII small subunit IPT PF01745.16 gi|119871664|ref|YP_929671.1| - 0.029 13.7 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Isopentenyl transferase TrwB_AAD_bind PF10412.9 gi|119871664|ref|YP_929671.1| - 0.076 11.9 0.1 13 4.5 0.3 2.7 2 1 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Cas_DxTHG PF09455.10 gi|119871665|ref|YP_929672.1| - 5.3e-13 49.3 0.0 1.9e-12 47.5 0.0 1.8 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family OrfB_Zn_ribbon PF07282.11 gi|119871666|ref|YP_929673.1| - 7.5e-08 32.2 0.0 1.3e-07 31.5 0.0 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain MarR_2 PF12802.7 gi|119871668|ref|YP_929675.1| - 1.4e-06 28.1 0.1 3.7e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|119871668|ref|YP_929675.1| - 3.3e-05 23.7 0.1 6.5e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|119871668|ref|YP_929675.1| - 0.0008 19.2 0.0 0.0013 18.5 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|119871668|ref|YP_929675.1| - 0.00091 19.0 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119871668|ref|YP_929675.1| - 0.0014 18.5 0.0 0.003 17.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|119871668|ref|YP_929675.1| - 0.022 14.8 0.0 0.022 14.8 0.0 2.3 3 0 0 3 3 3 0 DprA winged helix domain TFIIE_alpha PF02002.17 gi|119871668|ref|YP_929675.1| - 0.022 14.6 0.0 0.046 13.6 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit FeoC PF09012.10 gi|119871668|ref|YP_929675.1| - 0.036 14.1 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF433 PF04255.14 gi|119871668|ref|YP_929675.1| - 0.039 13.8 0.5 0.096 12.6 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF433) Rrf2 PF02082.20 gi|119871668|ref|YP_929675.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator IF2_N PF04760.15 gi|119871668|ref|YP_929675.1| - 0.073 12.9 1.5 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_45 PF14947.6 gi|119871668|ref|YP_929675.1| - 0.08 12.9 0.0 0.15 12.1 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn-helix ATPase_2 PF01637.18 gi|119871669|ref|YP_929676.1| - 5.6e-12 46.1 0.0 1.9e-11 44.3 0.0 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|119871669|ref|YP_929676.1| - 9.5e-07 28.9 0.0 0.026 14.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|119871669|ref|YP_929676.1| - 1.7e-06 28.6 2.0 3.4e-06 27.6 0.3 2.3 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|119871669|ref|YP_929676.1| - 4.4e-06 27.0 0.0 1.3e-05 25.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain RHH_5 PF07878.11 gi|119871669|ref|YP_929676.1| - 0.0074 16.2 0.2 0.068 13.1 0.2 2.8 2 0 0 2 2 2 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HTH_IclR PF09339.10 gi|119871669|ref|YP_929676.1| - 0.0089 15.8 0.2 0.047 13.5 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain Lant_dehydr_N PF04738.13 gi|119871669|ref|YP_929676.1| - 0.018 13.1 0.0 0.034 12.2 0.0 1.4 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus ANAPC2 PF08672.11 gi|119871669|ref|YP_929676.1| - 0.11 13.0 0.1 0.29 11.7 0.1 1.7 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 AAA PF00004.29 gi|119871669|ref|YP_929676.1| - 0.16 12.4 0.0 0.93 9.9 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Lactamase_B PF00753.27 gi|119871672|ref|YP_929679.1| - 1.4e-17 64.3 2.4 2.4e-17 63.6 2.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119871672|ref|YP_929679.1| - 1.6e-05 24.5 0.0 2.7e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain FTA4 PF13093.6 gi|119871672|ref|YP_929679.1| - 0.021 14.7 0.1 0.029 14.2 0.1 1.2 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 4HBT_2 PF13279.6 gi|119871673|ref|YP_929680.1| - 1.1e-06 29.1 0.0 1.5e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|119871673|ref|YP_929680.1| - 6.5e-05 23.2 0.1 0.0001 22.6 0.1 1.4 1 0 0 1 1 1 1 Thioesterase superfamily TruB_C PF09142.11 gi|119871673|ref|YP_929680.1| - 0.02 14.7 0.0 0.044 13.6 0.0 1.5 1 0 0 1 1 1 0 tRNA Pseudouridine synthase II, C terminal ATP-cone PF03477.16 gi|119871674|ref|YP_929681.1| - 0.0055 17.3 0.8 0.012 16.2 0.1 1.8 2 1 1 3 3 3 1 ATP cone domain SPO22 PF08631.10 gi|119871674|ref|YP_929681.1| - 0.058 12.9 0.0 0.44 10.0 0.0 1.9 1 1 1 2 2 2 0 Meiosis protein SPO22/ZIP4 like Rep_fac_C PF08542.11 gi|119871674|ref|YP_929681.1| - 0.16 12.4 0.1 0.64 10.5 0.0 1.9 2 0 0 2 2 2 0 Replication factor C C-terminal domain DUF4726 PF15855.5 gi|119871675|ref|YP_929682.1| - 0.058 13.6 1.4 0.19 12.0 1.8 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4726) OrfB_Zn_ribbon PF07282.11 gi|119871676|ref|YP_929683.1| - 2.4e-10 40.2 0.1 3.3e-10 39.7 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119871676|ref|YP_929683.1| - 0.013 15.4 1.0 0.017 15.0 1.0 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 RPA_interact_C PF14768.6 gi|119871676|ref|YP_929683.1| - 0.048 14.2 1.3 0.085 13.4 1.0 1.5 2 0 0 2 2 2 0 Replication protein A interacting C-terminal zf-RING_4 PF14570.6 gi|119871676|ref|YP_929683.1| - 0.087 12.6 1.7 0.14 12.0 1.7 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-NADH-PPase PF09297.11 gi|119871676|ref|YP_929683.1| - 0.27 10.9 3.3 0.44 10.3 3.3 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|119871676|ref|YP_929683.1| - 1.2 9.3 6.1 7.7 6.7 6.1 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 CRISPR_Cas6 PF10040.9 gi|119871677|ref|YP_929684.1| - 1.1e-12 48.4 0.2 1.9e-12 47.6 0.2 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Ni_hydr_CYTB PF01292.20 gi|119871678|ref|YP_929685.1| - 5.2e-17 62.0 14.2 6.2e-17 61.8 14.2 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_C PF00032.17 gi|119871678|ref|YP_929685.1| - 0.14 12.5 4.1 2.8 8.3 0.2 2.9 3 0 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD SUR7 PF06687.12 gi|119871678|ref|YP_929685.1| - 0.28 10.8 2.5 6.4 6.3 0.2 2.5 1 1 1 3 3 3 0 SUR7/PalI family Fer4_11 PF13247.6 gi|119871679|ref|YP_929686.1| - 6.7e-23 80.7 7.7 6.7e-23 80.7 7.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119871679|ref|YP_929686.1| - 5.7e-16 58.9 25.0 1.3e-07 32.1 8.8 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119871679|ref|YP_929686.1| - 1.1e-15 56.7 24.6 4.4e-06 26.3 1.3 4.7 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119871679|ref|YP_929686.1| - 2.5e-13 49.5 33.2 2.9e-05 23.9 1.9 4.5 5 0 0 5 5 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119871679|ref|YP_929686.1| - 1.6e-10 41.7 18.7 0.043 14.8 3.2 4.2 4 0 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119871679|ref|YP_929686.1| - 6.9e-10 38.9 46.7 2.4e-05 24.4 10.6 3.1 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119871679|ref|YP_929686.1| - 4.4e-09 36.3 24.8 0.00074 19.6 9.8 3.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119871679|ref|YP_929686.1| - 8.5e-08 32.2 20.9 3.5e-05 23.8 6.5 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119871679|ref|YP_929686.1| - 5.1e-07 29.7 35.8 0.017 15.6 3.3 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119871679|ref|YP_929686.1| - 3.3e-06 27.5 21.5 0.13 12.9 7.7 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119871679|ref|YP_929686.1| - 4.2e-06 26.5 10.7 0.00042 20.2 2.4 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119871679|ref|YP_929686.1| - 0.00012 22.7 45.5 0.017 16.0 4.5 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119871679|ref|YP_929686.1| - 0.00034 21.0 27.0 0.021 15.3 9.6 3.5 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119871679|ref|YP_929686.1| - 0.11 13.3 0.2 0.11 13.3 0.2 3.6 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119871679|ref|YP_929686.1| - 0.17 12.1 20.7 0.74 10.0 0.6 3.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|119871679|ref|YP_929686.1| - 6.2 7.0 12.7 1.1 9.4 0.1 3.4 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|119871679|ref|YP_929686.1| - 9.9 6.8 28.3 0.14 12.7 1.8 4.1 3 1 1 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Molybdopterin PF00384.22 gi|119871680|ref|YP_929687.1| - 4.6e-47 160.9 0.0 8e-47 160.2 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119871680|ref|YP_929687.1| - 7.6e-12 45.2 0.0 1.5e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|119871680|ref|YP_929687.1| - 0.0085 16.1 0.1 0.015 15.3 0.1 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|119871680|ref|YP_929687.1| - 0.026 14.7 0.2 0.078 13.2 0.0 1.8 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), N-terminal domain TrmB PF01978.19 gi|119871681|ref|YP_929688.1| - 0.075 12.9 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DNA_pol3_a_NI PF14480.6 gi|119871682|ref|YP_929689.1| - 0.016 15.2 0.0 0.035 14.1 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus I STN PF07660.14 gi|119871683|ref|YP_929690.1| - 0.0084 15.9 0.0 0.019 14.8 0.0 1.6 2 0 0 2 2 2 1 Secretin and TonB N terminus short domain AhpC-TSA PF00578.21 gi|119871684|ref|YP_929691.1| - 4.1e-25 88.1 0.0 5.4e-25 87.7 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|119871684|ref|YP_929691.1| - 4.3e-13 48.9 0.0 7.5e-13 48.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|119871684|ref|YP_929691.1| - 5.1e-09 36.0 0.0 6.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF3884 PF13024.6 gi|119871684|ref|YP_929691.1| - 0.065 12.8 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) Cons_hypoth698 PF03601.14 gi|119871685|ref|YP_929692.1| - 1.9e-22 79.5 20.3 4.1e-22 78.4 20.3 1.5 1 1 0 1 1 1 1 Conserved hypothetical protein 698 HDOD PF08668.12 gi|119871685|ref|YP_929692.1| - 0.14 11.6 0.1 0.3 10.5 0.1 1.5 1 0 0 1 1 1 0 HDOD domain DsrC PF04358.13 gi|119871686|ref|YP_929693.1| - 2.1e-34 118.2 0.0 2.4e-34 118.0 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.11 gi|119871686|ref|YP_929693.1| - 0.16 12.5 0.0 0.38 11.3 0.0 1.6 2 0 0 2 2 2 0 MerR, DNA binding NIR_SIR PF01077.22 gi|119871688|ref|YP_929695.1| - 1.5e-37 128.6 0.0 2.1e-37 128.1 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|119871688|ref|YP_929695.1| - 4e-10 39.4 0.0 7.4e-10 38.5 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_9 PF13187.6 gi|119871688|ref|YP_929695.1| - 0.00035 20.7 1.3 0.00092 19.3 1.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119871688|ref|YP_929695.1| - 0.00058 19.6 7.3 0.14 12.0 4.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119871688|ref|YP_929695.1| - 0.0006 20.3 1.9 0.0023 18.5 2.0 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119871688|ref|YP_929695.1| - 0.0022 18.4 0.4 0.0083 16.5 0.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|119871688|ref|YP_929695.1| - 0.036 14.1 7.4 5.4 7.2 0.0 3.8 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.6 gi|119871688|ref|YP_929695.1| - 0.047 13.8 3.5 0.26 11.4 2.4 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119871688|ref|YP_929695.1| - 0.067 13.4 0.8 0.13 12.4 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119871688|ref|YP_929695.1| - 0.073 13.2 7.0 0.45 10.7 4.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119871688|ref|YP_929695.1| - 0.081 13.1 2.2 0.12 12.6 0.7 1.9 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119871688|ref|YP_929695.1| - 0.09 13.3 0.9 0.09 13.3 0.9 2.1 3 0 0 3 3 1 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|119871688|ref|YP_929695.1| - 0.16 12.9 2.6 21 6.1 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119871688|ref|YP_929695.1| - 1.6 9.0 8.3 0.18 12.0 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NIR_SIR PF01077.22 gi|119871689|ref|YP_929696.1| - 3.4e-31 107.9 0.0 4.9e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|119871689|ref|YP_929696.1| - 0.0009 19.0 0.0 0.0044 16.8 0.0 2.2 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain Nitrate_red_gam PF02665.14 gi|119871690|ref|YP_929697.1| - 3e-36 125.0 13.9 1.2e-34 119.8 8.5 2.1 2 0 0 2 2 2 2 Nitrate reductase gamma subunit DUF4149 PF13664.6 gi|119871690|ref|YP_929697.1| - 0.73 10.2 7.1 0.26 11.6 3.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4149) DUF1129 PF06570.11 gi|119871690|ref|YP_929697.1| - 4.1 6.8 10.7 0.81 9.1 4.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) DUF3302 PF11742.8 gi|119871690|ref|YP_929697.1| - 7.6 6.7 10.5 1.3 9.2 0.6 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3302) SPASM PF13186.6 gi|119871691|ref|YP_929698.1| - 4.8e-11 43.0 0.4 1e-10 42.0 0.4 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|119871691|ref|YP_929698.1| - 2.5e-10 41.0 0.3 5.9e-10 39.8 0.1 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_8 PF13183.6 gi|119871692|ref|YP_929699.1| - 1.1e-12 48.2 3.2 1.1e-12 48.2 3.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119871692|ref|YP_929699.1| - 9.3e-12 45.4 15.3 3.4e-09 37.2 6.1 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119871692|ref|YP_929699.1| - 6.9e-10 39.3 3.2 6.9e-10 39.3 3.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119871692|ref|YP_929699.1| - 2.9e-09 36.9 5.1 2.9e-09 36.9 5.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119871692|ref|YP_929699.1| - 1.8e-08 35.2 3.5 1.8e-08 35.2 3.5 2.1 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain CCG PF02754.16 gi|119871692|ref|YP_929699.1| - 1.9e-08 34.4 4.8 3.4e-08 33.6 1.0 3.0 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|119871692|ref|YP_929699.1| - 1.5e-06 28.2 18.4 2.7e-05 24.2 9.1 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119871692|ref|YP_929699.1| - 1.8e-05 24.9 11.2 0.00036 20.8 2.0 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119871692|ref|YP_929699.1| - 3.5e-05 23.4 15.3 0.00012 21.7 4.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119871692|ref|YP_929699.1| - 0.00025 21.1 6.6 0.036 14.2 1.4 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119871692|ref|YP_929699.1| - 0.00027 20.9 12.9 0.00056 19.9 3.0 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119871692|ref|YP_929699.1| - 0.00028 20.8 3.8 0.00028 20.8 3.8 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119871692|ref|YP_929699.1| - 0.00079 20.2 15.8 0.044 14.7 5.0 3.0 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119871692|ref|YP_929699.1| - 0.0015 19.2 1.5 0.12 13.1 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119871692|ref|YP_929699.1| - 0.013 15.6 12.2 0.28 11.4 0.3 2.7 2 1 0 3 3 2 0 4Fe-4S dicluster domain CxC7 PF18866.1 gi|119871692|ref|YP_929699.1| - 0.023 14.8 0.1 0.14 12.3 0.1 2.4 1 0 0 1 1 1 0 CxC7 like cysteine cluster associated with KDZ transposases Fer4_13 PF13370.6 gi|119871692|ref|YP_929699.1| - 0.039 14.5 7.4 0.17 12.4 1.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|119871692|ref|YP_929699.1| - 8.3 7.3 16.0 1.1 10.2 1.6 2.8 2 1 1 4 4 2 0 4Fe-4S dicluster domain HTH_34 PF13601.6 gi|119871693|ref|YP_929700.1| - 0.00046 20.3 0.0 0.0011 19.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119871693|ref|YP_929700.1| - 0.025 14.5 0.0 0.062 13.2 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|119871693|ref|YP_929700.1| - 0.052 13.6 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|119871693|ref|YP_929700.1| - 0.094 12.3 0.0 0.3 10.7 0.0 1.9 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fer4_8 PF13183.6 gi|119871694|ref|YP_929701.1| - 6e-11 42.6 2.3 6e-11 42.6 2.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119871694|ref|YP_929701.1| - 8.3e-09 35.9 6.7 1.6e-08 35.0 4.4 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119871694|ref|YP_929701.1| - 1.2e-08 34.9 6.5 0.0022 18.1 0.1 3.4 3 0 0 3 3 3 2 4Fe-4S dicluster domain CCG PF02754.16 gi|119871694|ref|YP_929701.1| - 1.9e-08 34.4 0.1 1.8e-07 31.2 0.0 2.3 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|119871694|ref|YP_929701.1| - 4.1e-07 30.1 7.8 5e-07 29.8 4.3 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119871694|ref|YP_929701.1| - 1.4e-05 24.6 11.9 0.0058 16.4 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119871694|ref|YP_929701.1| - 2e-05 25.1 8.6 2e-05 25.1 8.6 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119871694|ref|YP_929701.1| - 0.0015 18.7 8.0 0.0065 16.7 0.1 3.2 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119871694|ref|YP_929701.1| - 0.0017 19.3 14.7 0.002 19.0 11.4 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119871694|ref|YP_929701.1| - 0.018 15.1 2.3 0.018 15.1 2.3 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119871694|ref|YP_929701.1| - 0.024 15.5 4.2 0.024 15.5 4.2 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119871694|ref|YP_929701.1| - 0.036 14.2 12.0 0.22 11.7 0.4 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119871694|ref|YP_929701.1| - 0.05 14.4 5.8 13 6.8 0.5 3.4 3 0 0 3 3 3 0 4Fe-4S dicluster domain DUF1461 PF07314.11 gi|119871694|ref|YP_929701.1| - 0.23 11.3 0.0 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1461) RecQ_Zn_bind PF16124.5 gi|119871694|ref|YP_929701.1| - 0.59 10.9 4.3 14 6.5 0.1 3.4 4 0 0 4 4 4 0 RecQ zinc-binding Fer4_4 PF12800.7 gi|119871694|ref|YP_929701.1| - 1.4 9.6 16.4 0.1 13.2 2.1 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain DUF326 PF03860.16 gi|119871694|ref|YP_929701.1| - 1.6 8.8 10.4 5.2 7.2 0.2 2.5 2 0 0 2 2 2 0 Domain of Unknown Function (DUF326) Nitrate_red_gam PF02665.14 gi|119871695|ref|YP_929702.1| - 3.3e-11 43.2 9.9 3.3e-11 43.2 9.9 2.1 2 0 0 2 2 2 1 Nitrate reductase gamma subunit E1-E2_ATPase PF00122.20 gi|119871695|ref|YP_929702.1| - 6.8 6.2 9.2 0.28 10.7 1.3 2.2 1 1 1 2 2 2 0 E1-E2 ATPase GATase_3 PF07685.14 gi|119871696|ref|YP_929703.1| - 2.1e-32 112.3 0.0 3.1e-32 111.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|119871696|ref|YP_929703.1| - 1.1e-13 51.4 0.0 1.9e-13 50.6 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|119871696|ref|YP_929703.1| - 4.4e-12 46.2 4.3 2.8e-08 33.8 0.1 2.7 2 1 0 3 3 3 2 AAA domain SNO PF01174.19 gi|119871696|ref|YP_929703.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family IncF PF17626.2 gi|119871696|ref|YP_929703.1| - 0.014 15.7 0.1 0.03 14.7 0.1 1.5 1 0 0 1 1 1 0 Inclusion membrane protein F DJ-1_PfpI PF01965.24 gi|119871696|ref|YP_929703.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family TP_methylase PF00590.20 gi|119871697|ref|YP_929704.1| - 1.6e-41 142.6 0.4 1.9e-41 142.3 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases UPF0227 PF05728.12 gi|119871697|ref|YP_929704.1| - 0.025 14.5 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) AAA_14 PF13173.6 gi|119871698|ref|YP_929705.1| - 2.9e-27 95.3 0.0 5.1e-27 94.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|119871698|ref|YP_929705.1| - 2.2e-06 27.8 0.0 1.2e-05 25.4 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_16 PF13191.6 gi|119871698|ref|YP_929705.1| - 0.0012 19.2 0.1 0.003 18.0 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|119871698|ref|YP_929705.1| - 0.042 13.6 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119871698|ref|YP_929705.1| - 0.043 14.1 0.1 5.9 7.2 0.0 2.8 2 1 1 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|119871698|ref|YP_929705.1| - 0.11 12.1 0.1 0.53 9.8 0.0 2.2 1 1 0 1 1 1 0 AAA domain DUF2368 PF10166.9 gi|119871699|ref|YP_929706.1| - 1.5 8.5 3.9 0.51 9.9 0.7 1.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2368) ABC_tran PF00005.27 gi|119871700|ref|YP_929707.1| - 6.9e-16 59.0 0.0 1.3e-15 58.1 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871700|ref|YP_929707.1| - 1.9e-12 47.6 0.4 2.2e-05 24.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871700|ref|YP_929707.1| - 2.5e-05 23.8 0.0 0.041 13.3 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119871700|ref|YP_929707.1| - 0.0011 19.5 0.0 0.0016 19.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119871700|ref|YP_929707.1| - 0.0014 18.4 0.1 0.0028 17.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119871700|ref|YP_929707.1| - 0.0015 19.0 0.1 0.0029 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|119871700|ref|YP_929707.1| - 0.0055 16.9 0.0 0.027 14.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|119871700|ref|YP_929707.1| - 0.0082 16.4 0.0 0.031 14.5 0.0 1.9 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|119871700|ref|YP_929707.1| - 0.032 13.9 0.0 0.069 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119871700|ref|YP_929707.1| - 0.037 14.5 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|119871700|ref|YP_929707.1| - 0.06 12.4 0.1 0.086 11.9 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|119871700|ref|YP_929707.1| - 0.069 12.5 0.0 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|119871700|ref|YP_929707.1| - 0.089 12.8 0.1 0.3 11.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|119871700|ref|YP_929707.1| - 0.09 12.7 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|119871700|ref|YP_929707.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_28 PF13521.6 gi|119871700|ref|YP_929707.1| - 0.12 12.6 0.1 0.21 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119871700|ref|YP_929707.1| - 0.17 11.4 0.1 0.28 10.8 0.1 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|119871700|ref|YP_929707.1| - 0.19 11.5 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|119871700|ref|YP_929707.1| - 0.2 11.9 0.0 0.29 11.3 0.0 1.2 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DUF3584 PF12128.8 gi|119871700|ref|YP_929707.1| - 0.31 8.5 0.1 0.41 8.1 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HTH_34 PF13601.6 gi|119871702|ref|YP_929709.1| - 1.3e-12 47.7 0.0 1.6e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|119871702|ref|YP_929709.1| - 2.3e-09 37.2 0.0 3.9e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|119871702|ref|YP_929709.1| - 2.7e-06 27.1 0.0 4.6e-05 23.1 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119871702|ref|YP_929709.1| - 5.1e-06 26.2 0.0 0.0011 18.8 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119871702|ref|YP_929709.1| - 6.3e-05 22.5 0.0 0.00012 21.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119871702|ref|YP_929709.1| - 0.00012 21.8 0.0 0.00025 20.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|119871702|ref|YP_929709.1| - 0.00032 20.5 0.0 0.0004 20.2 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix Fe_dep_repress PF01325.19 gi|119871702|ref|YP_929709.1| - 0.0015 18.7 0.0 0.0075 16.5 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|119871702|ref|YP_929709.1| - 0.0054 16.5 0.0 0.063 13.1 0.0 2.2 2 0 0 2 2 2 1 LexA DNA binding domain PadR PF03551.14 gi|119871702|ref|YP_929709.1| - 0.052 13.5 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family EF-hand_1 PF00036.32 gi|119871702|ref|YP_929709.1| - 0.055 13.0 0.1 0.64 9.7 0.0 2.4 2 0 0 2 2 2 0 EF hand TrmB PF01978.19 gi|119871702|ref|YP_929709.1| - 0.063 13.2 0.0 0.13 12.1 0.0 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|119871702|ref|YP_929709.1| - 0.078 13.3 0.0 0.13 12.6 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator HTH_micro PF17007.5 gi|119871702|ref|YP_929709.1| - 0.089 11.6 0.0 0.1 11.4 0.0 1.0 1 0 0 1 1 1 0 HTH-like Ribosomal_S8 PF00410.19 gi|119871702|ref|YP_929709.1| - 0.1 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S8 HTH_40 PF14493.6 gi|119871702|ref|YP_929709.1| - 0.1 13.0 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|119871702|ref|YP_929709.1| - 0.12 12.2 0.5 1.8 8.4 0.0 2.5 2 1 1 3 3 3 0 HTH DNA binding domain EF-hand_8 PF13833.6 gi|119871702|ref|YP_929709.1| - 0.15 12.0 0.0 0.77 9.6 0.0 2.1 2 0 0 2 2 2 0 EF-hand domain pair EF-hand_6 PF13405.6 gi|119871702|ref|YP_929709.1| - 0.15 12.1 0.0 1.1 9.4 0.0 2.2 2 0 0 2 2 2 0 EF-hand domain SPOR PF05036.13 gi|119871703|ref|YP_929710.1| - 0.00038 20.8 0.2 0.0009 19.6 0.2 1.5 1 0 0 1 1 1 1 Sporulation related domain SHE3 PF17078.5 gi|119871703|ref|YP_929710.1| - 0.026 14.2 4.7 0.084 12.6 4.7 1.8 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DHR10 PF18595.1 gi|119871703|ref|YP_929710.1| - 0.13 12.4 7.0 0.47 10.5 4.7 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Dynein_attach_N PF15867.5 gi|119871703|ref|YP_929710.1| - 0.13 12.2 0.5 0.13 12.2 0.5 2.9 3 1 0 3 3 3 0 Dynein attachment factor N-terminus Exonuc_VII_L PF02601.15 gi|119871703|ref|YP_929710.1| - 0.14 11.7 0.1 0.14 11.8 0.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Jnk-SapK_ap_N PF09744.9 gi|119871703|ref|YP_929710.1| - 2.2 8.5 10.1 0.15 12.3 4.3 2.0 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 Kinesin_assoc PF16183.5 gi|119871703|ref|YP_929710.1| - 7.5 6.7 7.3 12 5.9 7.3 1.4 1 0 0 1 1 1 0 Kinesin-associated Viral_DNA_bp PF00747.17 gi|119871705|ref|YP_929712.1| - 0.053 10.7 0.4 0.045 10.9 0.4 1.2 1 0 0 1 1 1 0 ssDNA binding protein HTH_34 PF13601.6 gi|119871706|ref|YP_929713.1| - 5.3e-10 39.3 0.0 6.1e-10 39.1 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|119871706|ref|YP_929713.1| - 1.6e-06 28.1 0.0 2.1e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|119871706|ref|YP_929713.1| - 2.8e-05 23.8 0.0 3.9e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119871706|ref|YP_929713.1| - 0.00011 21.9 0.0 0.00053 19.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119871706|ref|YP_929713.1| - 0.0002 20.8 0.0 0.00031 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119871706|ref|YP_929713.1| - 0.00026 20.8 0.0 0.00039 20.2 0.0 1.3 1 0 0 1 1 1 1 MarR family HxlR PF01638.17 gi|119871706|ref|YP_929713.1| - 0.00083 19.2 0.0 0.0009 19.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_psq PF05225.16 gi|119871706|ref|YP_929713.1| - 0.0028 17.3 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 helix-turn-helix, Psq domain Fe_dep_repress PF01325.19 gi|119871706|ref|YP_929713.1| - 0.013 15.7 0.0 0.037 14.2 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S8 PF00410.19 gi|119871706|ref|YP_929713.1| - 0.015 15.2 0.1 0.018 15.0 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein S8 HTH_12 PF08461.10 gi|119871706|ref|YP_929713.1| - 0.016 15.2 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.14 gi|119871706|ref|YP_929713.1| - 0.017 15.1 0.0 0.02 14.8 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SpoIIID PF12116.8 gi|119871706|ref|YP_929713.1| - 0.03 14.4 0.1 0.2 11.8 0.0 1.9 1 1 1 2 2 2 0 Stage III sporulation protein D HTH_40 PF14493.6 gi|119871706|ref|YP_929713.1| - 0.043 14.3 0.2 0.066 13.7 0.2 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|119871706|ref|YP_929713.1| - 0.099 12.5 0.1 2.2 8.2 0.0 2.2 1 1 1 2 2 2 0 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|119871706|ref|YP_929713.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.6 2 0 0 2 2 2 0 LexA DNA binding domain B-block_TFIIIC PF04182.12 gi|119871706|ref|YP_929713.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Radical_SAM PF04055.21 gi|119871707|ref|YP_929714.1| - 7.9e-06 26.4 0.0 1.8e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|119871707|ref|YP_929714.1| - 0.037 13.8 0.0 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) NIR_SIR PF01077.22 gi|119871707|ref|YP_929714.1| - 0.19 11.2 0.0 0.76 9.3 0.0 1.9 2 0 0 2 2 2 0 Nitrite and sulphite reductase 4Fe-4S domain ParA PF10609.9 gi|119871709|ref|YP_929716.1| - 1.4e-37 129.5 0.0 1.7e-37 129.2 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119871709|ref|YP_929716.1| - 1.5e-07 31.6 0.0 1.8e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|119871709|ref|YP_929716.1| - 5.4e-05 22.5 0.1 0.019 14.2 0.1 2.9 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|119871709|ref|YP_929716.1| - 0.0042 17.0 0.5 0.011 15.6 0.3 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119871709|ref|YP_929716.1| - 0.038 13.6 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119871709|ref|YP_929716.1| - 0.054 13.9 0.1 0.23 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|119871709|ref|YP_929716.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|119871709|ref|YP_929716.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|119871709|ref|YP_929716.1| - 0.2 11.4 0.1 0.31 10.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain HypA PF01155.19 gi|119871710|ref|YP_929717.1| - 8.5e-23 80.5 0.1 9.6e-23 80.3 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|119871710|ref|YP_929717.1| - 0.0013 18.2 0.3 0.21 11.1 0.1 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|119871710|ref|YP_929717.1| - 0.0025 17.9 1.3 2.1 8.5 0.1 2.3 2 0 0 2 2 2 2 Zinc ribbon domain zf-H2C2_2 PF13465.6 gi|119871710|ref|YP_929717.1| - 0.006 17.0 1.4 0.71 10.4 0.1 2.4 2 0 0 2 2 2 1 Zinc-finger double domain Zn_ribbon_SprT PF17283.2 gi|119871710|ref|YP_929717.1| - 0.0085 16.0 1.8 0.14 12.1 0.1 2.3 2 0 0 2 2 2 1 SprT-like zinc ribbon domain zf-IS66 PF13005.7 gi|119871710|ref|YP_929717.1| - 0.013 15.9 4.2 2 8.9 0.4 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Dof PF02701.15 gi|119871710|ref|YP_929717.1| - 0.016 15.4 1.0 2.3 8.4 0.2 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger Zn_Tnp_IS1595 PF12760.7 gi|119871710|ref|YP_929717.1| - 0.02 14.9 1.2 3.5 7.7 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|119871710|ref|YP_929717.1| - 0.021 14.7 1.6 1.4 8.9 0.1 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.20 gi|119871710|ref|YP_929717.1| - 0.023 14.7 1.5 2.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin zf-HIT PF04438.16 gi|119871710|ref|YP_929717.1| - 0.041 13.8 3.0 4.2 7.3 0.8 2.2 2 0 0 2 2 2 0 HIT zinc finger Nudix_N_2 PF14803.6 gi|119871710|ref|YP_929717.1| - 0.043 13.8 2.0 0.81 9.7 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|119871710|ref|YP_929717.1| - 0.043 14.5 4.0 1.2 9.8 1.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|119871710|ref|YP_929717.1| - 0.049 13.1 2.3 0.14 11.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain TackOD1 PF18551.1 gi|119871710|ref|YP_929717.1| - 0.065 12.9 0.1 3.2 7.4 0.0 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 eIF-5_eIF-2B PF01873.17 gi|119871710|ref|YP_929717.1| - 0.072 13.0 0.2 1.9 8.4 0.0 2.3 2 1 0 2 2 2 0 Domain found in IF2B/IF5 zinc_ribbon_4 PF13717.6 gi|119871710|ref|YP_929717.1| - 0.076 12.9 0.7 7.7 6.5 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|119871710|ref|YP_929717.1| - 0.087 13.1 0.3 11 6.3 0.0 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family TFIIS_C PF01096.18 gi|119871710|ref|YP_929717.1| - 0.092 12.6 2.1 3.5 7.6 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CCHC_6 PF15288.6 gi|119871710|ref|YP_929717.1| - 0.17 11.8 3.6 0.92 9.4 0.1 2.3 2 0 0 2 2 2 0 Zinc knuckle Zn_Tnp_IS1 PF03811.13 gi|119871710|ref|YP_929717.1| - 0.25 11.1 4.9 7 6.5 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain zinc_ribbon_13 PF09855.9 gi|119871710|ref|YP_929717.1| - 0.27 11.4 0.8 5.9 7.1 0.1 2.3 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ACC PF17848.1 gi|119871710|ref|YP_929717.1| - 0.31 11.1 1.8 0.79 9.8 0.3 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_5 PF13719.6 gi|119871710|ref|YP_929717.1| - 0.35 10.7 2.8 13 5.6 0.2 2.6 2 1 1 3 3 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|119871710|ref|YP_929717.1| - 0.53 10.2 4.3 2.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|119871710|ref|YP_929717.1| - 1.1 9.1 8.6 0.89 9.3 1.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|119871710|ref|YP_929717.1| - 2.6 8.2 5.6 18 5.5 0.7 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NikR_C PF08753.11 gi|119871711|ref|YP_929718.1| - 3.6e-25 87.9 4.3 4.3e-25 87.7 2.9 1.7 2 0 0 2 2 2 1 NikR C terminal nickel binding domain Bac_GDH PF05088.12 gi|119871711|ref|YP_929718.1| - 0.031 11.8 0.0 0.035 11.6 0.0 1.0 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase PQQ PF01011.21 gi|119871712|ref|YP_929719.1| - 0.0039 17.1 0.2 0.0067 16.3 0.2 1.4 1 0 0 1 1 1 1 PQQ enzyme repeat PK PF00224.21 gi|119871712|ref|YP_929719.1| - 0.11 11.4 0.0 0.12 11.2 0.0 1.0 1 0 0 1 1 1 0 Pyruvate kinase, barrel domain DUF4585 PF15232.6 gi|119871712|ref|YP_929719.1| - 0.13 12.3 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4585) Pico_P1A PF02226.16 gi|119871713|ref|YP_929720.1| - 0.23 11.5 0.0 12 6.1 0.0 2.1 1 1 1 2 2 2 0 Picornavirus coat protein (VP4) HycI PF01750.18 gi|119871714|ref|YP_929721.1| - 1.8e-07 31.0 0.0 2.5e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|119871715|ref|YP_929722.1| - 4.6e-45 154.5 0.0 6.6e-26 91.3 0.0 3.3 1 1 1 2 2 2 2 Nickel-dependent hydrogenase Fer4_17 PF13534.6 gi|119871716|ref|YP_929723.1| - 1e-09 38.8 2.5 2.8e-09 37.4 2.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119871716|ref|YP_929723.1| - 5.2e-09 36.4 1.5 5.2e-09 36.4 1.5 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119871716|ref|YP_929723.1| - 1.1e-07 32.3 6.7 7.2e-07 29.7 6.0 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|119871716|ref|YP_929723.1| - 1e-06 28.8 4.6 0.00092 19.4 0.1 3.3 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|119871716|ref|YP_929723.1| - 4.6e-06 26.6 6.9 6e-05 23.1 7.5 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119871716|ref|YP_929723.1| - 2.8e-05 24.3 2.0 0.81 9.9 0.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119871716|ref|YP_929723.1| - 3.4e-05 23.5 19.0 0.011 15.5 3.6 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119871716|ref|YP_929723.1| - 7.8e-05 22.7 6.6 0.069 13.3 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119871716|ref|YP_929723.1| - 0.00021 21.4 10.6 0.0017 18.5 9.8 2.5 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119871716|ref|YP_929723.1| - 0.00035 20.8 15.4 0.03 14.8 2.3 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119871716|ref|YP_929723.1| - 0.0012 18.8 19.2 0.0042 17.1 2.5 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119871716|ref|YP_929723.1| - 0.0055 16.7 17.7 0.018 15.1 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|119871716|ref|YP_929723.1| - 0.048 14.5 5.9 5.2 8.0 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S dicluster domain Glyco_transf_20 PF00982.21 gi|119871716|ref|YP_929723.1| - 0.064 11.9 0.0 0.089 11.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 20 Fer4_13 PF13370.6 gi|119871716|ref|YP_929723.1| - 0.13 12.8 11.5 2.6 8.7 0.5 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|119871716|ref|YP_929723.1| - 0.16 13.0 22.7 1.3 10.1 4.6 3.5 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119871716|ref|YP_929723.1| - 0.34 11.9 15.2 1.8 9.6 13.6 2.6 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|119871716|ref|YP_929723.1| - 0.77 10.5 8.1 3 8.7 0.4 3.1 3 1 0 3 3 3 0 4Fe-4S single cluster domain Nitrate_red_gam PF02665.14 gi|119871717|ref|YP_929724.1| - 0.04 13.5 1.1 0.04 13.5 1.1 3.4 3 2 1 4 4 4 0 Nitrate reductase gamma subunit DUF4022 PF13214.6 gi|119871717|ref|YP_929724.1| - 0.05 13.9 0.1 0.05 13.9 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4022) NiFe_hyd_SSU_C PF14720.6 gi|119871718|ref|YP_929725.1| - 3e-22 78.8 1.0 5.7e-22 77.9 1.0 1.5 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|119871718|ref|YP_929725.1| - 1.4e-14 54.1 0.0 7.4e-14 51.7 0.0 2.2 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit HTH_IclR PF09339.10 gi|119871719|ref|YP_929726.1| - 0.0062 16.3 0.0 3.7 7.4 0.0 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HycI PF01750.18 gi|119871720|ref|YP_929727.1| - 0.019 14.8 0.0 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Hydrogenase maturation protease AIRS_C PF02769.22 gi|119871721|ref|YP_929728.1| - 2.8e-17 63.3 0.2 4.5e-17 62.6 0.2 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119871721|ref|YP_929728.1| - 2.5e-13 50.5 1.4 4.3e-13 49.7 0.4 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Lactamase_B_3 PF13483.6 gi|119871722|ref|YP_929729.1| - 2.5e-18 66.5 0.0 3.1e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119871722|ref|YP_929729.1| - 1.1e-08 34.8 0.2 3.1e-07 30.1 0.0 2.0 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119871722|ref|YP_929729.1| - 0.00062 19.8 4.4 0.0042 17.1 0.9 2.1 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily HypD PF01924.16 gi|119871723|ref|YP_929730.1| - 4.1e-120 401.1 0.0 5e-120 400.8 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.18 gi|119871724|ref|YP_929731.1| - 5.2e-14 52.2 1.1 5.2e-14 52.2 1.1 1.6 2 0 0 2 2 2 1 HupF/HypC family Sua5_yciO_yrdC PF01300.18 gi|119871725|ref|YP_929732.1| - 2.1e-42 144.6 0.0 3.3e-42 144.0 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.12 gi|119871725|ref|YP_929732.1| - 5.1e-25 86.9 7.9 1.3e-12 47.2 0.1 2.3 2 0 0 2 2 2 2 HypF finger HypF_C PF17788.1 gi|119871725|ref|YP_929732.1| - 4.2e-23 82.0 0.1 1e-22 80.8 0.1 1.7 1 0 0 1 1 1 1 HypF Kae1-like domain Acylphosphatase PF00708.18 gi|119871725|ref|YP_929732.1| - 1.7e-18 66.8 0.0 4.1e-18 65.6 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|119871725|ref|YP_929732.1| - 5.2e-06 26.4 0.1 0.0061 16.3 0.0 2.2 2 0 0 2 2 2 2 Glycoprotease family zf-C4_ClpX PF06689.13 gi|119871725|ref|YP_929732.1| - 0.036 13.9 6.8 0.28 11.1 0.1 3.0 2 1 0 2 2 2 0 ClpX C4-type zinc finger ABC_tran PF00005.27 gi|119871728|ref|YP_929735.1| - 4.3e-30 105.0 0.0 5.3e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871728|ref|YP_929735.1| - 3.4e-11 43.5 0.0 1.4e-06 28.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871728|ref|YP_929735.1| - 2.2e-07 30.6 0.0 0.00018 21.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|119871728|ref|YP_929735.1| - 0.00011 21.3 0.0 0.00018 20.6 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|119871728|ref|YP_929735.1| - 0.0019 17.9 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119871728|ref|YP_929735.1| - 0.0028 17.9 0.1 0.0058 16.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|119871728|ref|YP_929735.1| - 0.0038 17.4 0.1 0.059 13.6 0.0 2.5 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|119871728|ref|YP_929735.1| - 0.0043 17.4 0.2 0.0097 16.3 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|119871728|ref|YP_929735.1| - 0.0057 16.2 0.6 0.008 15.8 0.6 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119871728|ref|YP_929735.1| - 0.016 15.0 0.3 0.031 14.0 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119871728|ref|YP_929735.1| - 0.017 15.7 0.0 0.55 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|119871728|ref|YP_929735.1| - 0.023 14.4 0.0 0.055 13.2 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase ATPase_2 PF01637.18 gi|119871728|ref|YP_929735.1| - 0.032 14.1 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|119871728|ref|YP_929735.1| - 0.061 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|119871728|ref|YP_929735.1| - 0.093 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.19 gi|119871728|ref|YP_929735.1| - 0.15 11.7 0.1 0.26 10.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|119871728|ref|YP_929735.1| - 0.17 11.1 0.4 0.29 10.3 0.4 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|119871728|ref|YP_929735.1| - 0.18 12.3 0.1 0.27 11.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119871728|ref|YP_929735.1| - 0.19 11.4 0.1 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|119871728|ref|YP_929735.1| - 0.22 11.6 0.1 0.41 10.7 0.1 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain PDGLE PF13190.6 gi|119871730|ref|YP_929737.1| - 2e-11 43.6 0.0 2.3e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 PDGLE domain DUF4014 PF13198.6 gi|119871730|ref|YP_929737.1| - 0.066 13.6 1.5 0.07 13.5 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4014) OppC_N PF12911.7 gi|119871730|ref|YP_929737.1| - 0.44 10.6 3.0 16 5.6 0.0 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C CbiM PF01891.16 gi|119871731|ref|YP_929738.1| - 4.7e-56 189.9 20.1 5.3e-56 189.7 20.1 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Ldr_toxin PF13940.6 gi|119871731|ref|YP_929738.1| - 0.021 14.9 0.1 0.021 14.9 0.1 3.4 5 0 0 5 5 5 0 Toxin Ldr, type I toxin-antitoxin system DUF5353 PF17304.2 gi|119871731|ref|YP_929738.1| - 1.1 9.0 12.9 1.6 8.5 3.2 3.3 2 1 1 3 3 3 0 Family of unknown function (DUF5353) NiFe_hyd_3_EhaA PF17367.2 gi|119871731|ref|YP_929738.1| - 1.2 9.4 9.2 4.7 7.4 0.1 3.2 3 2 1 4 4 4 0 NiFe-hydrogenase-type-3 Eha complex subunit A ABC_tran PF00005.27 gi|119871732|ref|YP_929739.1| - 5.2e-27 95.0 0.0 6.8e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871732|ref|YP_929739.1| - 1.8e-10 41.1 0.2 6.7e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871732|ref|YP_929739.1| - 9e-09 35.1 0.0 0.0027 17.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119871732|ref|YP_929739.1| - 5.7e-06 26.0 0.0 9.5e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119871732|ref|YP_929739.1| - 0.0026 18.3 0.0 0.0038 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119871732|ref|YP_929739.1| - 0.0033 17.7 0.1 0.012 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|119871732|ref|YP_929739.1| - 0.014 15.6 0.1 0.2 11.9 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|119871732|ref|YP_929739.1| - 0.02 15.3 0.1 0.051 14.0 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|119871732|ref|YP_929739.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|119871732|ref|YP_929739.1| - 0.023 14.4 0.0 0.037 13.7 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|119871732|ref|YP_929739.1| - 0.034 13.9 0.0 0.047 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|119871732|ref|YP_929739.1| - 0.055 13.3 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 MukB N-terminal DUF3584 PF12128.8 gi|119871732|ref|YP_929739.1| - 0.079 10.5 0.0 0.1 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|119871732|ref|YP_929739.1| - 0.092 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ATPase_2 PF01637.18 gi|119871732|ref|YP_929739.1| - 0.11 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|119871732|ref|YP_929739.1| - 0.12 12.1 0.0 0.12 12.1 0.0 1.3 1 1 0 1 1 1 0 Cytidylate kinase RNA_helicase PF00910.22 gi|119871732|ref|YP_929739.1| - 0.15 12.5 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TniB PF05621.11 gi|119871732|ref|YP_929739.1| - 0.17 11.3 0.1 0.92 8.9 0.1 1.9 2 0 0 2 2 2 0 Bacterial TniB protein DUF3987 PF13148.6 gi|119871732|ref|YP_929739.1| - 0.17 10.8 0.1 0.27 10.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_14 PF13173.6 gi|119871732|ref|YP_929739.1| - 0.18 11.9 0.0 0.36 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|119871732|ref|YP_929739.1| - 0.21 10.5 0.0 0.26 10.2 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain FecCD PF01032.18 gi|119871733|ref|YP_929740.1| - 4.1e-72 242.8 42.5 5e-72 242.5 42.5 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|119871734|ref|YP_929741.1| - 1.1e-26 93.8 0.0 1.6e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SSP160 PF06933.11 gi|119871734|ref|YP_929741.1| - 0.59 8.3 5.3 0.92 7.6 5.3 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DUF364 PF04016.12 gi|119871735|ref|YP_929742.1| - 2.9e-27 95.0 0.0 4.2e-27 94.5 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|119871735|ref|YP_929742.1| - 1e-08 35.3 0.0 1.8e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation Glyco_transf_4 PF13439.6 gi|119871735|ref|YP_929742.1| - 0.019 14.9 0.1 0.042 13.8 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 NAD_binding_8 PF13450.6 gi|119871735|ref|YP_929742.1| - 0.044 14.0 0.0 0.077 13.2 0.0 1.4 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AMP-binding PF00501.28 gi|119871736|ref|YP_929743.1| - 1.1e-44 152.8 0.2 7.1e-26 90.8 0.1 2.5 2 1 0 2 2 2 2 AMP-binding enzyme ACAS_N PF16177.5 gi|119871736|ref|YP_929743.1| - 3.9e-06 26.7 0.0 8e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus FmdE PF02663.14 gi|119871737|ref|YP_929744.1| - 5e-29 101.0 0.0 7.2e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.17 gi|119871737|ref|YP_929744.1| - 0.00039 20.3 0.8 0.00039 20.3 0.8 1.7 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger DUF4503 PF14951.6 gi|119871737|ref|YP_929744.1| - 0.034 12.6 0.1 0.052 12.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) HypA PF01155.19 gi|119871737|ref|YP_929744.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|119871737|ref|YP_929744.1| - 0.23 11.7 0.7 0.56 10.4 0.7 1.7 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PaREP1 PF05942.11 gi|119871740|ref|YP_929747.1| - 1.8e-26 92.3 0.3 2.5e-26 91.9 0.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Arm-DNA-bind_3 PF13356.6 gi|119871740|ref|YP_929747.1| - 0.33 11.3 3.6 0.66 10.4 1.1 2.4 1 1 1 2 2 2 0 Arm DNA-binding domain Thymidylate_kin PF02223.17 gi|119871741|ref|YP_929748.1| - 0.095 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase Radical_SAM PF04055.21 gi|119871742|ref|YP_929749.1| - 8.3e-20 71.8 0.0 3.5e-19 69.8 0.0 1.8 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119871742|ref|YP_929749.1| - 1.7e-12 47.8 0.0 2.6e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119871742|ref|YP_929749.1| - 1.3e-08 34.9 0.0 2.5e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|119871742|ref|YP_929749.1| - 0.056 12.9 0.0 3.1 7.2 0.0 2.5 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel NRDD PF13597.6 gi|119871743|ref|YP_929750.1| - 1.4e-145 486.3 0.0 1.6e-145 486.0 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|119871743|ref|YP_929750.1| - 0.0036 17.3 0.1 0.0069 16.4 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|119871743|ref|YP_929750.1| - 0.063 13.3 0.3 0.14 12.2 0.3 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|119871743|ref|YP_929750.1| - 0.07 13.9 0.1 0.12 13.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family Ribosomal_L37e PF01907.19 gi|119871743|ref|YP_929750.1| - 0.18 12.0 2.0 0.38 10.9 2.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_2 PF13240.6 gi|119871743|ref|YP_929750.1| - 1.4 8.8 5.5 6.8 6.6 5.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119871743|ref|YP_929750.1| - 1.7 8.8 4.0 3.3 7.9 0.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119871743|ref|YP_929750.1| - 4.8 6.7 7.6 25 4.5 0.9 2.1 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|119871743|ref|YP_929750.1| - 7.9 6.7 6.0 35 4.6 6.0 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Peripla_BP_2 PF01497.18 gi|119871744|ref|YP_929751.1| - 3.1e-63 213.5 0.8 1.7e-38 132.6 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein DUF2884 PF11101.8 gi|119871744|ref|YP_929751.1| - 0.099 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) CobN-Mg_chel PF02514.16 gi|119871745|ref|YP_929752.1| - 0 1055.5 0.0 0 1055.2 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase EccE PF11203.8 gi|119871745|ref|YP_929752.1| - 0.0047 17.2 0.0 0.023 15.0 0.0 2.2 2 0 0 2 2 2 1 Putative type VII ESX secretion system translocon, EccE TipAS PF07739.13 gi|119871745|ref|YP_929752.1| - 0.0052 17.3 0.8 0.37 11.4 0.2 3.0 1 1 1 2 2 2 1 TipAS antibiotic-recognition domain AAA_lid_2 PF17863.1 gi|119871746|ref|YP_929753.1| - 6.5e-18 64.4 0.0 1.7e-17 63.0 0.0 1.7 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|119871746|ref|YP_929753.1| - 9.4e-13 48.0 1.0 2.5e-06 27.0 0.0 2.9 3 1 1 4 4 4 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|119871746|ref|YP_929753.1| - 1.2e-11 45.2 0.0 5.3e-11 43.1 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|119871746|ref|YP_929753.1| - 1.1e-09 38.4 0.2 0.0002 21.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|119871746|ref|YP_929753.1| - 3.2e-08 34.0 0.0 8.7e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain MCM PF00493.23 gi|119871746|ref|YP_929753.1| - 2.6e-05 23.4 0.0 0.03 13.4 0.0 2.7 2 1 0 2 2 2 2 MCM P-loop domain AAA_22 PF13401.6 gi|119871746|ref|YP_929753.1| - 0.00022 21.5 0.0 0.003 17.8 0.0 2.6 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119871746|ref|YP_929753.1| - 0.00081 19.8 0.1 0.0029 18.0 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119871746|ref|YP_929753.1| - 0.002 17.8 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|119871746|ref|YP_929753.1| - 0.0024 18.3 0.0 0.029 14.8 0.0 2.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|119871746|ref|YP_929753.1| - 0.0026 17.0 0.0 0.023 13.8 0.0 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF815) Mg_chelatase_C PF13335.6 gi|119871746|ref|YP_929753.1| - 0.0069 17.0 0.8 0.015 15.9 0.8 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal Sigma54_activat PF00158.26 gi|119871746|ref|YP_929753.1| - 0.0093 15.7 0.1 5.5 6.7 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain Mito_fiss_reg PF05308.11 gi|119871746|ref|YP_929753.1| - 0.013 15.6 0.5 0.021 14.9 0.5 1.2 1 0 0 1 1 1 0 Mitochondrial fission regulator AAA_18 PF13238.6 gi|119871746|ref|YP_929753.1| - 0.052 14.1 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|119871746|ref|YP_929753.1| - 0.056 12.6 0.2 0.69 9.1 0.1 2.1 2 0 0 2 2 2 0 TIP49 P-loop domain VWA_CoxE PF05762.14 gi|119871746|ref|YP_929753.1| - 0.084 12.3 0.3 0.23 10.8 0.3 1.8 2 1 0 2 2 2 0 VWA domain containing CoxE-like protein TsaE PF02367.17 gi|119871746|ref|YP_929753.1| - 0.18 11.8 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|119871746|ref|YP_929753.1| - 0.23 10.9 0.0 0.55 9.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region UPF0147 PF03685.13 gi|119871746|ref|YP_929753.1| - 0.32 11.1 3.1 0.75 9.9 2.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0147) Peripla_BP_2 PF01497.18 gi|119871747|ref|YP_929754.1| - 9.9e-66 221.7 0.0 4e-32 111.7 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein DUF3989 PF13150.6 gi|119871747|ref|YP_929754.1| - 0.01 15.6 3.3 1.9 8.3 0.0 4.1 4 0 0 4 4 4 0 Protein of unknown function (DUF3989) GFRP PF06399.13 gi|119871747|ref|YP_929754.1| - 0.05 13.5 0.0 18 5.3 0.0 2.7 2 0 0 2 2 2 0 GTP cyclohydrolase I feedback regulatory protein (GFRP) FF PF01846.19 gi|119871747|ref|YP_929754.1| - 0.085 13.0 0.3 7.8 6.8 0.0 2.5 2 0 0 2 2 2 0 FF domain FecCD PF01032.18 gi|119871748|ref|YP_929755.1| - 2.6e-85 286.2 40.8 3.6e-85 285.7 40.8 1.2 1 0 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|119871749|ref|YP_929756.1| - 2.9e-27 95.8 0.0 4.1e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871749|ref|YP_929756.1| - 1.8e-16 60.8 3.1 3.1e-08 33.8 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871749|ref|YP_929756.1| - 9.2e-09 35.1 0.1 0.0032 16.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119871749|ref|YP_929756.1| - 1.1e-06 28.7 0.0 0.00024 20.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|119871749|ref|YP_929756.1| - 2.8e-06 26.9 0.0 4.8e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|119871749|ref|YP_929756.1| - 6.9e-06 25.8 0.1 1.2e-05 25.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119871749|ref|YP_929756.1| - 2.3e-05 25.0 0.0 3.4e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119871749|ref|YP_929756.1| - 0.00018 21.5 0.0 0.51 10.2 0.0 2.2 2 0 0 2 2 2 2 NTPase AAA_22 PF13401.6 gi|119871749|ref|YP_929756.1| - 0.00068 19.9 0.1 0.11 12.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119871749|ref|YP_929756.1| - 0.0012 19.3 0.1 0.0021 18.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119871749|ref|YP_929756.1| - 0.0012 19.3 0.0 0.004 17.6 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|119871749|ref|YP_929756.1| - 0.0016 18.5 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|119871749|ref|YP_929756.1| - 0.0021 17.8 0.2 0.015 15.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119871749|ref|YP_929756.1| - 0.024 14.2 0.9 0.46 10.0 0.3 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|119871749|ref|YP_929756.1| - 0.029 14.7 0.3 0.12 12.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|119871749|ref|YP_929756.1| - 0.03 13.7 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase_2 PF01637.18 gi|119871749|ref|YP_929756.1| - 0.036 14.0 0.0 0.054 13.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|119871749|ref|YP_929756.1| - 0.036 14.0 0.0 0.095 12.6 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|119871749|ref|YP_929756.1| - 0.037 14.0 0.0 0.31 11.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|119871749|ref|YP_929756.1| - 0.052 12.8 0.0 0.091 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|119871749|ref|YP_929756.1| - 0.058 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|119871749|ref|YP_929756.1| - 0.06 13.5 0.0 0.15 12.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119871749|ref|YP_929756.1| - 0.1 12.5 0.6 0.36 10.7 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase cobW PF02492.19 gi|119871749|ref|YP_929756.1| - 0.12 11.9 0.0 0.27 10.8 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.6 gi|119871749|ref|YP_929756.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|119871749|ref|YP_929756.1| - 0.17 10.6 0.8 2.4 6.9 0.6 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class G-alpha PF00503.20 gi|119871749|ref|YP_929756.1| - 0.29 10.2 0.0 0.44 9.7 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Gate PF07670.14 gi|119871750|ref|YP_929757.1| - 0.012 15.9 0.2 0.012 15.9 0.2 2.5 2 1 0 2 2 2 0 Nucleoside recognition Methyltransf_25 PF13649.6 gi|119871751|ref|YP_929758.1| - 9.5e-11 42.3 0.1 1.8e-10 41.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119871751|ref|YP_929758.1| - 1.2e-08 35.5 0.1 2.3e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|119871751|ref|YP_929758.1| - 5.2e-06 25.7 0.0 7.7e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|119871751|ref|YP_929758.1| - 0.00022 21.1 0.0 0.00033 20.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|119871751|ref|YP_929758.1| - 0.00032 20.1 0.0 0.00057 19.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|119871751|ref|YP_929758.1| - 0.00051 20.7 0.0 0.00079 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|119871751|ref|YP_929758.1| - 0.00072 19.4 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.15 gi|119871751|ref|YP_929758.1| - 0.00084 18.7 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G PCMT PF01135.19 gi|119871751|ref|YP_929758.1| - 0.0037 17.0 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|119871751|ref|YP_929758.1| - 0.018 14.8 0.0 0.024 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MRP-L28 PF09812.9 gi|119871751|ref|YP_929758.1| - 0.058 13.5 0.1 0.09 12.9 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 PTS_IIB PF02302.17 gi|119871751|ref|YP_929758.1| - 0.072 13.8 0.1 4 8.2 0.1 2.6 2 1 1 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit tRNA_U5-meth_tr PF05958.11 gi|119871751|ref|YP_929758.1| - 0.096 11.7 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Cas_APE2256 PF09651.10 gi|119871751|ref|YP_929758.1| - 0.1 12.5 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) NodS PF05401.11 gi|119871751|ref|YP_929758.1| - 0.1 12.2 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) NUMOD1 PF07453.13 gi|119871751|ref|YP_929758.1| - 0.13 12.6 0.0 0.43 10.9 0.0 1.9 2 0 0 2 2 2 0 NUMOD1 domain MTS PF05175.14 gi|119871751|ref|YP_929758.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DREV PF05219.12 gi|119871751|ref|YP_929758.1| - 0.16 11.1 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Sigma70_r3 PF04539.16 gi|119871751|ref|YP_929758.1| - 0.19 11.9 0.6 0.37 10.9 0.6 1.4 1 0 0 1 1 1 0 Sigma-70 region 3 DUF4143 PF13635.6 gi|119871753|ref|YP_929760.1| - 5.7e-08 32.9 0.0 7.3e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) UPF0102 PF02021.17 gi|119871753|ref|YP_929760.1| - 0.0026 17.9 0.0 0.0048 17.1 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 MazE_antitoxin PF04014.18 gi|119871754|ref|YP_929761.1| - 9e-11 41.5 0.6 2e-10 40.4 0.6 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|119871755|ref|YP_929762.1| - 4.6e-15 56.2 0.3 5.6e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|119871755|ref|YP_929762.1| - 5.1e-06 27.2 0.1 5.8e-06 27.1 0.1 1.3 1 1 0 1 1 1 1 PIN domain DUF2204 PF09970.9 gi|119871757|ref|YP_929764.1| - 3.1e-05 23.7 0.0 6.6e-05 22.6 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase of unknown function (DUF2204) OrfB_Zn_ribbon PF07282.11 gi|119871759|ref|YP_929766.1| - 4.1e-11 42.6 0.0 8e-11 41.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119871759|ref|YP_929766.1| - 0.0061 16.2 3.6 0.013 15.1 3.6 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119871759|ref|YP_929766.1| - 0.0071 16.0 1.8 0.016 14.9 1.8 1.6 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119871759|ref|YP_929766.1| - 0.019 14.5 1.7 0.49 10.0 0.1 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|119871759|ref|YP_929766.1| - 0.055 13.5 0.9 0.13 12.3 0.9 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|119871759|ref|YP_929766.1| - 0.06 13.5 0.7 0.13 12.4 0.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain NRDD PF13597.6 gi|119871759|ref|YP_929766.1| - 0.063 12.1 0.0 0.092 11.5 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Ribosomal_L37e PF01907.19 gi|119871759|ref|YP_929766.1| - 0.097 12.8 0.2 0.18 12.0 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e DZR PF12773.7 gi|119871759|ref|YP_929766.1| - 0.1 12.7 0.3 0.17 11.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon FYDLN_acid PF09538.10 gi|119871759|ref|YP_929766.1| - 0.21 12.3 0.2 0.21 12.3 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-ribbon_3 PF13248.6 gi|119871759|ref|YP_929766.1| - 0.28 10.6 2.0 4.2 6.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119871759|ref|YP_929766.1| - 0.67 10.2 2.4 1.2 9.3 2.4 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1122 PF06557.11 gi|119871760|ref|YP_929767.1| - 1.5e-14 53.8 0.0 3e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Pyr_redox_2 PF07992.14 gi|119871761|ref|YP_929768.1| - 6.5e-55 186.4 4.2 8e-55 186.1 4.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119871761|ref|YP_929768.1| - 1.2e-21 77.0 1.8 4e-16 59.3 0.1 3.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119871761|ref|YP_929768.1| - 1.5e-13 50.7 0.1 7.4e-12 45.1 0.0 2.1 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|119871761|ref|YP_929768.1| - 7.4e-10 39.1 0.6 3.1e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HI0933_like PF03486.14 gi|119871761|ref|YP_929768.1| - 2.6e-08 33.0 0.8 0.024 13.4 0.1 3.8 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|119871761|ref|YP_929768.1| - 4.6e-08 33.0 12.2 0.075 12.6 0.2 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.22 gi|119871761|ref|YP_929768.1| - 2.4e-07 30.2 2.8 0.012 14.8 0.1 2.7 2 0 0 2 2 2 2 Glucose inhibited division protein A TrkA_N PF02254.18 gi|119871761|ref|YP_929768.1| - 1.1e-06 28.9 0.1 0.0099 16.1 0.0 2.6 2 0 0 2 2 2 2 TrkA-N domain Lycopene_cycl PF05834.12 gi|119871761|ref|YP_929768.1| - 1.3e-06 27.8 3.2 0.0058 15.7 0.3 2.6 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|119871761|ref|YP_929768.1| - 1.7e-06 28.2 2.2 0.02 15.1 0.1 2.9 2 1 0 3 3 2 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|119871761|ref|YP_929768.1| - 6.7e-06 25.6 1.7 0.047 13.0 0.1 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|119871761|ref|YP_929768.1| - 2.3e-05 24.4 1.2 7.6e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|119871761|ref|YP_929768.1| - 2.8e-05 24.5 0.4 0.28 11.6 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.14 gi|119871761|ref|YP_929768.1| - 4.4e-05 23.1 0.5 6.9e-05 22.5 0.1 1.5 2 0 0 2 2 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.6 gi|119871761|ref|YP_929768.1| - 0.00011 22.2 1.9 0.45 10.5 0.0 4.1 4 0 0 4 4 4 1 FAD-NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|119871761|ref|YP_929768.1| - 0.00032 20.1 0.3 0.018 14.4 0.0 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|119871761|ref|YP_929768.1| - 0.00063 19.1 1.4 0.0078 15.5 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|119871761|ref|YP_929768.1| - 0.00085 18.6 0.9 0.74 9.0 0.1 2.3 2 0 0 2 2 2 2 Thi4 family K_oxygenase PF13434.6 gi|119871761|ref|YP_929768.1| - 0.00088 18.5 0.3 0.0048 16.1 0.0 2.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 gi|119871761|ref|YP_929768.1| - 0.0011 18.5 13.2 0.062 12.6 0.5 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|119871761|ref|YP_929768.1| - 0.0046 15.9 0.1 0.0046 15.9 0.1 1.7 2 0 0 2 2 2 1 Tryptophan halogenase XdhC_C PF13478.6 gi|119871761|ref|YP_929768.1| - 0.011 16.2 0.0 0.095 13.2 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_2 PF00890.24 gi|119871761|ref|YP_929768.1| - 0.018 14.1 12.5 0.022 13.8 0.3 3.0 2 1 0 2 2 2 0 FAD binding domain ThiF PF00899.21 gi|119871761|ref|YP_929768.1| - 0.035 13.4 0.7 0.071 12.4 0.7 1.4 1 0 0 1 1 1 0 ThiF family Nitro_FeMo-Co PF02579.17 gi|119871761|ref|YP_929768.1| - 0.046 14.0 0.9 0.42 11.0 0.3 2.5 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor adh_short PF00106.25 gi|119871761|ref|YP_929768.1| - 0.066 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 short chain dehydrogenase Shikimate_DH PF01488.20 gi|119871761|ref|YP_929768.1| - 0.15 12.1 0.3 1.7 8.7 0.0 2.5 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Fer2_3 PF13085.6 gi|119871762|ref|YP_929769.1| - 4.7e-30 103.8 0.1 5e-30 103.7 0.1 1.0 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2 PF00111.27 gi|119871762|ref|YP_929769.1| - 0.00017 21.5 1.9 0.0003 20.7 1.9 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|119871762|ref|YP_929769.1| - 0.051 13.6 0.1 0.071 13.2 0.1 1.4 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain DHODB_Fe-S_bind PF10418.9 gi|119871762|ref|YP_929769.1| - 7.1 6.5 9.1 61 3.5 9.5 2.1 1 1 1 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FAD_binding_2 PF00890.24 gi|119871763|ref|YP_929770.1| - 2.5e-109 366.1 2.1 3.1e-109 365.9 2.1 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|119871763|ref|YP_929770.1| - 7e-30 103.6 0.1 1.1e-29 103.0 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|119871763|ref|YP_929770.1| - 4.1e-08 33.2 2.6 3.1e-07 30.3 1.4 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|119871763|ref|YP_929770.1| - 0.00016 21.0 1.0 0.00026 20.3 0.4 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119871763|ref|YP_929770.1| - 0.00033 19.9 3.2 0.0005 19.3 3.2 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|119871763|ref|YP_929770.1| - 0.00095 18.0 0.5 0.0033 16.2 0.8 1.6 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|119871763|ref|YP_929770.1| - 0.0025 17.1 1.8 0.0038 16.5 1.8 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|119871763|ref|YP_929770.1| - 0.003 17.0 6.9 0.005 16.2 6.9 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|119871763|ref|YP_929770.1| - 0.012 15.8 2.3 0.031 14.5 0.9 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|119871763|ref|YP_929770.1| - 0.07 12.4 2.8 0.34 10.1 0.9 2.4 2 0 0 2 2 2 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|119871763|ref|YP_929770.1| - 0.12 11.7 0.6 0.21 10.9 0.6 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HpaB_N PF11794.8 gi|119871764|ref|YP_929771.1| - 7.8e-95 317.6 0.0 1e-94 317.2 0.0 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|119871764|ref|YP_929771.1| - 1.5e-62 210.2 0.0 2.3e-62 209.7 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|119871764|ref|YP_929771.1| - 0.0012 19.1 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_1 PF00441.24 gi|119871764|ref|YP_929771.1| - 0.088 13.0 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, C-terminal domain Aldedh PF00171.22 gi|119871765|ref|YP_929772.1| - 5.8e-155 516.3 0.5 6.5e-155 516.2 0.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family AMP-binding PF00501.28 gi|119871766|ref|YP_929773.1| - 1.7e-87 293.8 0.0 2.2e-87 293.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|119871766|ref|YP_929773.1| - 5.6e-26 91.3 3.9 1.4e-25 90.1 3.9 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|119871766|ref|YP_929773.1| - 8e-22 76.9 1.8 1.6e-21 75.9 1.8 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus ADH_zinc_N PF00107.26 gi|119871767|ref|YP_929774.1| - 2.3e-32 111.7 3.0 4.4e-32 110.8 3.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|119871767|ref|YP_929774.1| - 1.9e-30 104.9 0.2 1.9e-30 104.9 0.2 2.5 3 1 1 4 4 4 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|119871767|ref|YP_929774.1| - 9.7e-10 39.6 1.0 1.2e-09 39.3 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|119871767|ref|YP_929774.1| - 1.4e-07 31.3 2.2 1.9e-07 30.8 2.2 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|119871767|ref|YP_929774.1| - 2.9e-07 30.0 5.8 5.5e-07 29.1 5.8 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|119871767|ref|YP_929774.1| - 3.8e-05 23.1 0.4 6.7e-05 22.3 0.4 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|119871767|ref|YP_929774.1| - 0.01 15.3 1.6 0.016 14.7 1.6 1.4 1 0 0 1 1 1 0 short chain dehydrogenase TrkA_N PF02254.18 gi|119871767|ref|YP_929774.1| - 0.012 15.9 3.3 0.02 15.1 3.3 1.4 1 0 0 1 1 1 0 TrkA-N domain Met_10 PF02475.16 gi|119871767|ref|YP_929774.1| - 0.1 12.4 0.7 0.16 11.7 0.7 1.3 1 0 0 1 1 1 0 Met-10+ like-protein NAD_binding_7 PF13241.6 gi|119871767|ref|YP_929774.1| - 0.1 13.0 1.7 0.17 12.3 1.7 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding NmrA PF05368.13 gi|119871767|ref|YP_929774.1| - 0.1 12.1 3.9 0.16 11.5 3.9 1.2 1 0 0 1 1 1 0 NmrA-like family 3HCDH_N PF02737.18 gi|119871767|ref|YP_929774.1| - 0.11 12.4 5.4 0.8 9.6 5.4 2.1 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|119871767|ref|YP_929774.1| - 0.11 12.5 6.9 0.31 11.1 6.9 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|119871767|ref|YP_929774.1| - 0.17 11.5 1.4 0.34 10.5 1.4 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF4213 PF13938.6 gi|119871767|ref|YP_929774.1| - 0.64 10.3 3.2 1.3 9.3 1.3 2.3 2 0 0 2 2 2 0 Putative heavy-metal chelation Pyr_redox PF00070.27 gi|119871767|ref|YP_929774.1| - 0.68 10.5 4.3 0.46 11.1 2.2 1.8 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase PEPcase_2 PF14010.6 gi|119871768|ref|YP_929775.1| - 1e-118 397.0 0.1 1.2e-118 396.8 0.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|119871768|ref|YP_929775.1| - 0.021 12.9 0.0 0.032 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase CBS PF00571.28 gi|119871769|ref|YP_929776.1| - 6.3e-25 87.4 4.9 9.4e-14 51.6 0.2 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|119871769|ref|YP_929776.1| - 0.017 15.4 0.4 3.5 8.0 0.1 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain NAD_kinase PF01513.21 gi|119871769|ref|YP_929776.1| - 0.036 13.3 0.2 0.049 12.8 0.1 1.2 1 1 0 1 1 1 0 ATP-NAD kinase GTP_cyclohydro2 PF00925.20 gi|119871769|ref|YP_929776.1| - 0.063 12.9 0.0 0.094 12.3 0.0 1.4 1 1 0 1 1 1 0 GTP cyclohydrolase II CBS PF00571.28 gi|119871770|ref|YP_929777.1| - 1e-25 89.9 4.5 4.6e-13 49.4 0.3 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|119871770|ref|YP_929777.1| - 0.043 13.9 1.1 8 6.6 0.1 2.4 2 1 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) CBS PF00571.28 gi|119871771|ref|YP_929778.1| - 1.4e-21 76.7 6.9 3.3e-12 46.7 0.9 2.1 2 0 0 2 2 2 2 CBS domain Pro_CA PF00484.19 gi|119871772|ref|YP_929779.1| - 7.8e-07 29.5 0.0 1.7e-06 28.4 0.0 1.6 1 1 0 1 1 1 1 Carbonic anhydrase BPD_transp_1 PF00528.22 gi|119871774|ref|YP_929781.1| - 4.1e-05 23.4 12.1 4.1e-05 23.4 12.1 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119871775|ref|YP_929782.1| - 5.2e-11 42.6 17.5 5.2e-11 42.6 17.5 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|119871776|ref|YP_929783.1| - 1.1e-45 156.5 1.7 1.4e-45 156.2 1.7 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|119871776|ref|YP_929783.1| - 1.5e-11 44.8 7.4 3.8e-11 43.5 7.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|119871776|ref|YP_929783.1| - 0.0002 20.5 0.0 0.0012 18.0 0.0 2.0 1 1 0 1 1 1 1 PBP superfamily domain FeoB_N PF02421.18 gi|119871777|ref|YP_929784.1| - 2.1e-29 102.1 0.0 3e-29 101.6 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|119871777|ref|YP_929784.1| - 1.3e-23 83.4 20.1 2.5e-19 69.6 4.5 3.4 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|119871777|ref|YP_929784.1| - 5e-17 62.0 0.0 7.4e-17 61.5 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Imm70 PF15601.6 gi|119871777|ref|YP_929784.1| - 0.046 13.3 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 Immunity protein 70 CoA_trans PF01144.23 gi|119871778|ref|YP_929785.1| - 1e-40 139.5 0.4 1.2e-37 129.4 0.0 2.8 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|119871778|ref|YP_929785.1| - 1.5e-06 26.8 0.2 3.2e-06 25.8 0.1 1.5 2 0 0 2 2 2 1 Malonate decarboxylase, alpha subunit, transporter NrfD PF03916.14 gi|119871779|ref|YP_929786.1| - 1.3e-09 38.2 39.7 1.3e-09 38.2 39.7 2.3 2 1 0 2 2 2 1 Polysulphide reductase, NrfD Fer4_11 PF13247.6 gi|119871780|ref|YP_929787.1| - 3e-20 72.2 14.4 1.8e-13 50.4 4.8 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119871780|ref|YP_929787.1| - 1.9e-19 70.0 19.0 5.2e-10 39.7 2.7 3.2 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119871780|ref|YP_929787.1| - 2.2e-16 59.2 36.6 2.6e-07 30.4 2.6 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4 PF00037.27 gi|119871780|ref|YP_929787.1| - 9e-15 53.8 36.7 5.5e-08 32.3 2.6 5.8 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119871780|ref|YP_929787.1| - 5.1e-13 48.9 23.7 3e-07 30.4 6.8 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119871780|ref|YP_929787.1| - 2.9e-12 46.5 23.7 1.2e-06 28.6 5.7 3.5 1 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119871780|ref|YP_929787.1| - 1.7e-11 44.4 15.5 1.6e-05 25.2 5.6 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119871780|ref|YP_929787.1| - 2.9e-11 42.7 34.7 6.6e-06 25.9 1.2 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119871780|ref|YP_929787.1| - 9e-09 35.7 39.1 0.0021 18.9 1.0 4.2 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119871780|ref|YP_929787.1| - 3.1e-07 30.4 34.6 0.0013 19.1 3.0 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119871780|ref|YP_929787.1| - 2.2e-06 28.5 27.7 0.098 13.6 3.4 4.5 3 2 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119871780|ref|YP_929787.1| - 0.00014 22.4 26.3 0.014 15.9 4.2 4.2 3 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119871780|ref|YP_929787.1| - 0.00048 20.2 35.1 0.0054 16.8 12.1 4.2 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119871780|ref|YP_929787.1| - 0.0046 17.5 1.1 0.0046 17.5 1.1 4.1 4 1 0 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|119871780|ref|YP_929787.1| - 0.011 16.5 18.1 0.011 16.4 0.2 3.6 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|119871780|ref|YP_929787.1| - 0.4 10.9 24.3 0.089 13.0 5.7 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|119871781|ref|YP_929788.1| - 9.7e-37 126.9 0.0 1.5e-36 126.3 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119871781|ref|YP_929788.1| - 6.5e-11 42.3 0.2 1.8e-09 37.6 0.2 2.6 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|119871781|ref|YP_929788.1| - 1.1e-08 34.9 0.8 2.3e-08 33.9 0.8 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molybdopterin_N PF18364.1 gi|119871781|ref|YP_929788.1| - 0.15 12.1 1.1 26 4.9 0.1 3.3 3 0 0 3 3 3 0 Molybdopterin oxidoreductase N-terminal domain Chorismate_bind PF00425.18 gi|119871783|ref|YP_929790.1| - 7.6e-75 251.8 0.0 9.4e-75 251.5 0.0 1.0 1 0 0 1 1 1 1 chorismate binding enzyme CBS PF00571.28 gi|119871784|ref|YP_929791.1| - 1.7e-44 150.1 5.0 3.2e-15 56.3 1.0 4.5 4 0 0 4 4 4 4 CBS domain MFS_1 PF07690.16 gi|119871784|ref|YP_929791.1| - 9.5e-26 90.5 60.2 1.4e-17 63.7 32.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119871784|ref|YP_929791.1| - 1.8e-24 86.5 28.7 8e-17 61.2 14.3 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter GAF_2 PF13185.6 gi|119871784|ref|YP_929791.1| - 0.11 12.8 1.2 3 8.2 0.4 3.0 2 1 1 3 3 3 0 GAF domain AMP-binding PF00501.28 gi|119871785|ref|YP_929792.1| - 4e-96 322.2 0.0 4.8e-96 321.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|119871785|ref|YP_929792.1| - 1.4e-30 106.1 1.9 2.1e-30 105.5 0.8 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|119871785|ref|YP_929792.1| - 5.5e-23 80.6 0.5 2e-22 78.9 0.5 2.1 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Homoserine_dh PF00742.19 gi|119871786|ref|YP_929793.1| - 4.5e-31 108.1 0.0 4e-30 105.0 0.0 2.1 1 1 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|119871786|ref|YP_929793.1| - 2.2e-07 31.5 0.0 4.9e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|119871786|ref|YP_929793.1| - 0.00067 19.9 0.1 0.0051 17.1 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ELFV_dehydrog PF00208.21 gi|119871786|ref|YP_929793.1| - 0.00095 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.20 gi|119871786|ref|YP_929793.1| - 0.0022 18.1 0.0 0.0043 17.2 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|119871786|ref|YP_929793.1| - 0.037 14.4 0.1 0.098 13.0 0.1 1.7 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|119871786|ref|YP_929793.1| - 0.1 13.3 0.0 0.2 12.3 0.0 1.6 1 0 0 1 1 1 0 PglD N-terminal domain Semialdhyde_dh PF01118.24 gi|119871787|ref|YP_929794.1| - 7.2e-34 116.8 0.0 1.2e-33 116.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|119871787|ref|YP_929794.1| - 5.9e-33 114.5 0.0 1e-32 113.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DXP_reductoisom PF02670.16 gi|119871787|ref|YP_929794.1| - 0.00094 19.9 0.0 0.0024 18.6 0.0 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sacchrp_dh_NADP PF03435.18 gi|119871787|ref|YP_929794.1| - 0.023 14.9 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|119871787|ref|YP_929794.1| - 0.029 13.8 0.0 0.043 13.3 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|119871787|ref|YP_929794.1| - 0.039 14.1 0.0 0.064 13.4 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.28 gi|119871788|ref|YP_929795.1| - 1.1e-42 146.3 0.0 1.4e-42 145.9 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family PALP PF00291.25 gi|119871789|ref|YP_929796.1| - 6.2e-69 232.6 3.1 7.3e-69 232.4 3.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-ribbon_3 PF13248.6 gi|119871789|ref|YP_929796.1| - 0.012 15.0 0.6 3.4 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|119871789|ref|YP_929796.1| - 0.048 13.6 1.3 0.096 12.6 1.3 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|119871789|ref|YP_929796.1| - 0.11 12.5 0.2 0.21 11.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119871789|ref|YP_929796.1| - 0.22 11.3 3.5 0.45 10.3 3.5 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|119871789|ref|YP_929796.1| - 0.23 11.5 0.1 0.51 10.4 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_11 PF16622.5 gi|119871789|ref|YP_929796.1| - 0.42 10.4 3.6 0.19 11.5 0.9 1.8 1 1 1 2 2 2 0 zinc-finger C2H2-type Lar_restr_allev PF14354.6 gi|119871789|ref|YP_929796.1| - 1.1 9.7 2.8 17 5.9 0.4 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|119871789|ref|YP_929796.1| - 3.2 7.3 4.3 22 4.7 0.4 2.2 1 1 0 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|119871789|ref|YP_929796.1| - 3.8 7.3 5.0 17 5.3 5.0 1.9 1 1 0 1 1 1 0 Rubredoxin metal binding domain Semialdhyde_dh PF01118.24 gi|119871791|ref|YP_929798.1| - 4.9e-32 110.9 0.0 8.3e-32 110.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|119871791|ref|YP_929798.1| - 5.8e-10 39.5 0.0 1.5e-09 38.2 0.0 1.6 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|119871791|ref|YP_929798.1| - 0.1 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.28 gi|119871792|ref|YP_929799.1| - 1.4e-33 116.5 2.1 1.7e-33 116.2 2.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family DUF3117 PF11314.8 gi|119871792|ref|YP_929799.1| - 0.064 13.1 1.7 0.63 9.9 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) HypA PF01155.19 gi|119871793|ref|YP_929800.1| - 1.4e-06 28.3 0.3 1.4e-06 28.2 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|119871793|ref|YP_929800.1| - 2.2e-06 27.7 0.3 2.9e-06 27.3 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119871793|ref|YP_929800.1| - 0.00012 21.9 1.2 0.19 11.7 0.0 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|119871793|ref|YP_929800.1| - 0.00047 19.8 1.1 0.34 10.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|119871793|ref|YP_929800.1| - 0.00082 19.2 2.3 0.0017 18.2 2.3 1.5 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|119871793|ref|YP_929800.1| - 0.0021 17.4 0.3 0.84 9.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119871793|ref|YP_929800.1| - 0.0023 17.4 4.5 0.0052 16.3 4.6 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding zf-CSL PF05207.13 gi|119871793|ref|YP_929800.1| - 0.0026 17.4 0.9 0.0036 17.0 0.2 1.6 2 0 0 2 2 2 1 CSL zinc finger zf-CHCC PF10276.9 gi|119871793|ref|YP_929800.1| - 0.0046 17.0 0.4 2.5 8.2 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger domain zf-IS66 PF13005.7 gi|119871793|ref|YP_929800.1| - 0.0071 16.7 0.4 0.42 11.1 0.0 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-Sec23_Sec24 PF04810.15 gi|119871793|ref|YP_929800.1| - 0.012 15.6 0.1 0.33 11.1 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger PhnA_Zn_Ribbon PF08274.12 gi|119871793|ref|YP_929800.1| - 0.013 15.4 0.9 0.02 14.8 0.9 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon zf-HYPF PF07503.12 gi|119871793|ref|YP_929800.1| - 0.028 14.2 3.9 0.41 10.5 4.0 2.1 1 1 0 1 1 1 0 HypF finger UPF0547 PF10571.9 gi|119871793|ref|YP_929800.1| - 0.029 14.5 1.2 1.6 8.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Elf1 PF05129.13 gi|119871793|ref|YP_929800.1| - 0.03 14.4 0.5 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.7 gi|119871793|ref|YP_929800.1| - 0.032 14.3 0.3 0.044 13.8 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|119871793|ref|YP_929800.1| - 0.033 14.2 0.3 0.043 13.8 0.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-tcix PF14952.6 gi|119871793|ref|YP_929800.1| - 0.045 13.4 1.6 4.6 7.0 0.3 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Cys_rich_CPXG PF14255.6 gi|119871793|ref|YP_929800.1| - 0.045 13.6 1.4 6.9 6.7 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG Nudix_N_2 PF14803.6 gi|119871793|ref|YP_929800.1| - 0.062 13.2 0.7 5.7 6.9 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-C2H2_3 PF13878.6 gi|119871793|ref|YP_929800.1| - 0.077 12.8 2.9 1.6 8.7 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO NRDD PF13597.6 gi|119871793|ref|YP_929800.1| - 0.077 11.8 0.1 0.077 11.8 0.1 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF2072 PF09845.9 gi|119871793|ref|YP_929800.1| - 0.11 12.8 0.3 0.12 12.7 0.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein Lar_restr_allev PF14354.6 gi|119871793|ref|YP_929800.1| - 0.11 12.9 1.4 0.75 10.2 1.4 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|119871793|ref|YP_929800.1| - 0.11 12.2 2.6 1.5 8.6 2.8 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF983 PF06170.12 gi|119871793|ref|YP_929800.1| - 0.15 12.5 1.1 4.5 7.8 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) TFIIS_C PF01096.18 gi|119871793|ref|YP_929800.1| - 0.16 11.9 1.8 12 5.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.26 gi|119871793|ref|YP_929800.1| - 0.17 12.4 0.7 7.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|119871793|ref|YP_929800.1| - 0.19 12.7 0.6 9.1 7.4 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger CpXC PF14353.6 gi|119871793|ref|YP_929800.1| - 0.21 11.7 1.1 2.3 8.3 0.0 2.0 1 1 1 2 2 2 0 CpXC protein Mu-like_Com PF10122.9 gi|119871793|ref|YP_929800.1| - 0.41 10.1 2.4 5.3 6.6 0.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2_6 PF13912.6 gi|119871793|ref|YP_929800.1| - 0.47 10.5 2.8 17 5.5 0.8 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-HIT PF04438.16 gi|119871793|ref|YP_929800.1| - 1.1 9.2 6.1 4.1 7.4 0.9 2.1 2 0 0 2 2 2 0 HIT zinc finger Arginosuc_synth PF00764.19 gi|119871794|ref|YP_929801.1| - 3e-123 412.0 0.0 3.6e-123 411.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase zf_Rg PF17915.1 gi|119871795|ref|YP_929802.1| - 0.0011 18.4 1.7 0.14 11.6 0.1 2.1 2 0 0 2 2 2 2 Reverse gyrase zinc finger Sgf11 PF08209.11 gi|119871795|ref|YP_929802.1| - 0.0044 16.6 0.4 0.0044 16.6 0.4 3.0 2 1 1 3 3 3 1 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.6 gi|119871795|ref|YP_929802.1| - 0.0068 16.1 11.3 0.32 10.8 0.6 3.2 2 1 1 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119871795|ref|YP_929802.1| - 0.011 15.1 9.1 0.18 11.2 0.6 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|119871795|ref|YP_929802.1| - 0.048 13.3 5.0 2.1 8.0 0.5 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-TFIIB PF13453.6 gi|119871795|ref|YP_929802.1| - 0.05 12.9 5.8 1 8.7 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger DZR PF12773.7 gi|119871795|ref|YP_929802.1| - 0.065 13.3 6.9 0.55 10.3 6.9 2.1 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|119871795|ref|YP_929802.1| - 0.078 12.5 9.4 0.27 10.8 1.8 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_C2H2_10 PF18414.1 gi|119871795|ref|YP_929802.1| - 0.16 11.5 1.2 0.16 11.5 1.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF2614 PF11023.8 gi|119871795|ref|YP_929802.1| - 0.31 11.1 0.1 0.31 11.1 0.1 1.9 1 1 1 2 2 2 0 Zinc-ribbon containing domain OrfB_Zn_ribbon PF07282.11 gi|119871795|ref|YP_929802.1| - 0.34 10.9 8.0 1.5 8.8 2.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.6 gi|119871795|ref|YP_929802.1| - 0.49 10.3 2.7 21 5.1 1.3 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_10 PF10058.9 gi|119871795|ref|YP_929802.1| - 0.58 9.9 8.5 2.3 8.0 8.5 1.9 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS1595 PF12760.7 gi|119871795|ref|YP_929802.1| - 1.1 9.3 10.5 2.2 8.4 1.2 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-HYPF PF07503.12 gi|119871795|ref|YP_929802.1| - 1.4 8.7 8.3 26 4.7 8.3 2.2 1 1 0 1 1 1 0 HypF finger zf-H2C2_2 PF13465.6 gi|119871795|ref|YP_929802.1| - 2.1 8.9 9.5 2.9 8.5 0.7 2.9 2 1 1 3 3 3 0 Zinc-finger double domain zf-NADH-PPase PF09297.11 gi|119871795|ref|YP_929802.1| - 2.2 8.0 8.7 2.9 7.6 0.3 2.9 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|119871795|ref|YP_929802.1| - 3 7.8 8.1 6.1 6.8 1.1 2.5 2 1 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.6 gi|119871795|ref|YP_929802.1| - 5.6 7.1 7.2 56 3.9 7.5 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|119871795|ref|YP_929802.1| - 6.1 7.0 12.3 0.92 9.6 1.2 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Lyase_1 PF00206.20 gi|119871796|ref|YP_929803.1| - 1.9e-41 142.5 0.0 2.6e-41 142.0 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|119871796|ref|YP_929803.1| - 0.037 14.8 0.1 0.33 11.7 0.0 2.5 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal OrfB_Zn_ribbon PF07282.11 gi|119871797|ref|YP_929804.1| - 5e-07 29.5 0.0 7.6e-07 29.0 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RPA_interact_C PF14768.6 gi|119871797|ref|YP_929804.1| - 0.15 12.7 0.2 0.56 10.8 0.0 1.9 2 0 0 2 2 2 0 Replication protein A interacting C-terminal DUF998 PF06197.13 gi|119871799|ref|YP_929806.1| - 7e-29 100.7 15.2 7.7e-29 100.6 15.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Sigma_M_inh PF17453.2 gi|119871799|ref|YP_929806.1| - 0.78 10.2 5.8 0.37 11.3 2.5 2.0 1 1 1 2 2 2 0 Sigma-M inhibitor Phage_holin_5_1 PF06946.11 gi|119871799|ref|YP_929806.1| - 5.6 7.4 7.7 1.6 9.1 3.6 2.1 1 1 1 2 2 2 0 Bacteriophage A118-like holin, Hol118 CbtA PF09490.10 gi|119871799|ref|YP_929806.1| - 9.3 5.9 13.1 4 7.1 6.3 2.3 1 1 1 2 2 2 0 Probable cobalt transporter subunit (CbtA) ABC_tran PF00005.27 gi|119871800|ref|YP_929807.1| - 7.6e-33 113.9 0.0 1.1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871800|ref|YP_929807.1| - 7.4e-12 45.7 3.1 1.5e-05 25.0 1.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|119871800|ref|YP_929807.1| - 8.2e-08 32.3 0.3 9.6e-07 28.9 0.0 2.6 3 0 0 3 3 2 1 TOBE domain AAA_22 PF13401.6 gi|119871800|ref|YP_929807.1| - 5.1e-06 26.8 0.3 2.7e-05 24.5 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119871800|ref|YP_929807.1| - 6.5e-05 22.6 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119871800|ref|YP_929807.1| - 0.00012 22.5 0.1 0.00018 21.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119871800|ref|YP_929807.1| - 0.0016 18.9 0.1 0.018 15.5 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|119871800|ref|YP_929807.1| - 0.0024 17.9 0.2 0.018 15.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|119871800|ref|YP_929807.1| - 0.0025 17.6 0.2 0.01 15.6 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|119871800|ref|YP_929807.1| - 0.0029 17.5 0.0 0.0091 15.9 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase SMC_N PF02463.19 gi|119871800|ref|YP_929807.1| - 0.0076 15.7 0.0 0.93 8.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|119871800|ref|YP_929807.1| - 0.0096 15.7 0.0 0.028 14.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119871800|ref|YP_929807.1| - 0.011 15.4 0.7 0.052 13.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|119871800|ref|YP_929807.1| - 0.021 14.2 0.0 0.04 13.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|119871800|ref|YP_929807.1| - 0.021 15.3 0.0 0.042 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119871800|ref|YP_929807.1| - 0.037 14.3 0.1 0.065 13.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119871800|ref|YP_929807.1| - 0.041 14.4 0.0 0.065 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|119871800|ref|YP_929807.1| - 0.041 14.1 0.2 0.62 10.3 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|119871800|ref|YP_929807.1| - 0.041 13.8 0.0 0.07 13.0 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|119871800|ref|YP_929807.1| - 0.047 13.9 0.1 0.096 12.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|119871800|ref|YP_929807.1| - 0.071 12.5 0.1 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein T2SSE PF00437.20 gi|119871800|ref|YP_929807.1| - 0.12 11.5 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|119871800|ref|YP_929807.1| - 0.15 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|119871800|ref|YP_929807.1| - 0.18 11.9 0.1 0.38 10.8 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase BPD_transp_1 PF00528.22 gi|119871801|ref|YP_929808.1| - 7.1e-14 52.0 22.4 7.1e-14 52.0 22.4 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component COA2 PF17051.5 gi|119871801|ref|YP_929808.1| - 2.2 8.4 6.5 29 4.8 0.2 3.2 3 0 0 3 3 3 0 Cytochrome C oxidase assembly factor 2 BPD_transp_1 PF00528.22 gi|119871802|ref|YP_929809.1| - 2e-09 37.5 18.7 2e-09 37.5 18.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OrfB_Zn_ribbon PF07282.11 gi|119871803|ref|YP_929810.1| - 1.3e-09 37.9 0.0 2.7e-09 36.8 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119871803|ref|YP_929810.1| - 0.013 15.5 0.2 0.021 14.9 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|119871803|ref|YP_929810.1| - 0.06 13.0 1.6 0.12 12.0 1.6 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.6 gi|119871803|ref|YP_929810.1| - 0.061 13.3 0.3 0.099 12.6 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|119871803|ref|YP_929810.1| - 0.075 13.0 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|119871803|ref|YP_929810.1| - 0.1 12.3 3.1 0.2 11.4 3.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|119871803|ref|YP_929810.1| - 0.1 12.6 0.4 0.66 10.0 0.0 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RPA_interact_C PF14768.6 gi|119871803|ref|YP_929810.1| - 0.11 13.1 0.2 0.21 12.1 0.2 1.5 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-C4_Topoisom PF01396.19 gi|119871803|ref|YP_929810.1| - 0.13 12.1 5.0 1.9 8.4 5.3 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|119871803|ref|YP_929810.1| - 0.14 12.4 1.5 0.22 11.7 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rep_fac-A_C PF08646.10 gi|119871803|ref|YP_929810.1| - 0.15 11.8 0.3 0.29 10.9 0.3 1.4 1 0 0 1 1 1 0 Replication factor-A C terminal domain TF_Zn_Ribbon PF08271.12 gi|119871803|ref|YP_929810.1| - 0.21 11.1 2.3 0.46 10.0 2.3 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|119871803|ref|YP_929810.1| - 0.81 9.7 3.7 5.2 7.1 3.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119871803|ref|YP_929810.1| - 2.1 8.1 6.9 1.3 8.7 3.5 2.2 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|119871803|ref|YP_929810.1| - 2.2 7.7 4.0 7.3 6.0 4.0 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Succ_CoA_lig PF13607.6 gi|119871805|ref|YP_929812.1| - 1.3e-48 164.3 4.4 1.8e-46 157.4 0.2 3.4 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|119871805|ref|YP_929812.1| - 4.8e-24 85.1 3.0 2.2e-23 83.0 0.1 2.8 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|119871805|ref|YP_929812.1| - 2.6e-06 28.0 0.7 8e-06 26.4 0.2 2.1 2 0 0 2 2 2 1 CoA binding domain Peripla_BP_3 PF13377.6 gi|119871805|ref|YP_929812.1| - 0.014 15.7 0.0 0.31 11.4 0.0 2.6 3 0 0 3 3 3 0 Periplasmic binding protein-like domain YhhN PF07947.14 gi|119871806|ref|YP_929813.1| - 0.013 15.1 1.0 0.019 14.6 1.0 1.3 1 0 0 1 1 1 0 YhhN family DUF4719 PF15843.5 gi|119871806|ref|YP_929813.1| - 0.11 12.6 0.1 0.12 12.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4719) DUF2140 PF09911.9 gi|119871808|ref|YP_929815.1| - 0.0062 16.1 0.3 0.013 15.1 0.1 1.5 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2140) Thioredoxin_2 PF13098.6 gi|119871808|ref|YP_929815.1| - 0.013 15.9 0.0 0.047 14.2 0.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|119871808|ref|YP_929815.1| - 0.015 15.5 0.0 0.032 14.4 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin CBS PF00571.28 gi|119871809|ref|YP_929816.1| - 1.5e-30 105.4 1.9 5.9e-15 55.5 0.0 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|119871809|ref|YP_929816.1| - 0.012 15.9 0.9 0.77 10.1 0.2 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain Acetyltransf_10 PF13673.7 gi|119871809|ref|YP_929816.1| - 0.085 12.8 0.0 0.53 10.2 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain SporV_AA PF12164.8 gi|119871809|ref|YP_929816.1| - 0.14 12.5 1.3 0.32 11.4 0.4 1.9 1 1 1 2 2 2 0 Stage V sporulation protein AA TmoB PF06234.12 gi|119871809|ref|YP_929816.1| - 0.29 11.3 5.3 1.3 9.2 0.3 2.4 1 1 1 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) VWA PF00092.28 gi|119871810|ref|YP_929817.1| - 0.00013 22.2 0.4 0.00096 19.4 0.2 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|119871810|ref|YP_929817.1| - 0.00052 20.6 0.0 0.0045 17.6 0.0 2.5 2 0 0 2 2 2 1 von Willebrand factor type A domain aGPT-Pplase3 PF18746.1 gi|119871810|ref|YP_929817.1| - 0.0015 17.9 0.0 0.0027 17.1 0.0 1.3 1 0 0 1 1 1 1 Alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 3 DUF885 PF05960.11 gi|119871810|ref|YP_929817.1| - 0.0024 17.6 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF885) VWA_CoxE PF05762.14 gi|119871810|ref|YP_929817.1| - 0.0075 15.7 0.2 0.054 12.9 0.2 2.1 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein efThoc1 PF11957.8 gi|119871810|ref|YP_929817.1| - 0.046 12.4 0.2 0.071 11.8 0.2 1.2 1 0 0 1 1 1 0 THO complex subunit 1 transcription elongation factor AAA_5 PF07728.14 gi|119871811|ref|YP_929818.1| - 3.9e-26 91.7 0.0 1e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119871811|ref|YP_929818.1| - 4e-06 27.3 0.1 3.6e-05 24.2 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|119871811|ref|YP_929818.1| - 0.00056 19.8 0.0 0.0018 18.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119871811|ref|YP_929818.1| - 0.0015 18.9 0.0 0.0042 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|119871811|ref|YP_929818.1| - 0.0033 16.9 0.0 0.0079 15.6 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|119871811|ref|YP_929818.1| - 0.0033 17.2 0.0 0.0063 16.3 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|119871811|ref|YP_929818.1| - 0.075 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|119871811|ref|YP_929818.1| - 0.094 12.5 1.5 5 6.9 0.2 2.9 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain OrfB_Zn_ribbon PF07282.11 gi|119871812|ref|YP_929819.1| - 2.8e-06 27.1 0.2 3.4e-06 26.9 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119871812|ref|YP_929819.1| - 0.0068 16.3 0.1 0.0088 16.0 0.1 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|119871812|ref|YP_929819.1| - 0.023 14.7 0.4 0.026 14.5 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|119871812|ref|YP_929819.1| - 0.026 14.6 0.2 0.031 14.4 0.2 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|119871812|ref|YP_929819.1| - 0.063 13.0 0.3 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119871812|ref|YP_929819.1| - 0.21 11.3 3.4 0.44 10.2 3.4 1.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain NurA PF09376.10 gi|119871813|ref|YP_929820.1| - 9.1e-46 156.5 1.0 1.2e-45 156.2 1.0 1.1 1 0 0 1 1 1 1 NurA domain Adaptin_N PF01602.20 gi|119871813|ref|YP_929820.1| - 0.063 11.8 0.0 0.09 11.3 0.0 1.1 1 0 0 1 1 1 0 Adaptin N terminal region DUF87 PF01935.17 gi|119871814|ref|YP_929821.1| - 1.2e-38 133.5 0.0 1.9e-38 132.8 0.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|119871814|ref|YP_929821.1| - 4.1e-11 42.9 0.1 1.8e-10 40.8 0.1 2.2 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|119871814|ref|YP_929821.1| - 2.5e-07 30.0 0.0 0.00011 21.3 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|119871814|ref|YP_929821.1| - 2.9e-06 26.2 0.0 0.026 13.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|119871814|ref|YP_929821.1| - 7e-06 26.1 0.0 0.00015 21.9 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit T4SS-DNA_transf PF02534.14 gi|119871814|ref|YP_929821.1| - 1e-05 24.5 0.1 3.5e-05 22.8 0.0 1.7 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.18 gi|119871814|ref|YP_929821.1| - 0.003 16.9 0.0 1.5 8.1 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|119871814|ref|YP_929821.1| - 0.0036 17.6 0.0 3.4 7.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|119871814|ref|YP_929821.1| - 0.0072 16.1 0.0 0.04 13.7 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Zot PF05707.12 gi|119871814|ref|YP_929821.1| - 0.019 14.6 0.0 0.34 10.5 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_10 PF12846.7 gi|119871814|ref|YP_929821.1| - 0.031 13.2 0.0 0.1 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain Metallophos PF00149.28 gi|119871815|ref|YP_929822.1| - 9.2e-13 49.2 1.0 2e-12 48.0 1.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|119871815|ref|YP_929822.1| - 2.5e-09 37.6 0.0 7.4e-09 36.0 0.0 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.19 gi|119871816|ref|YP_929823.1| - 2.4e-23 82.8 0.0 5.7e-23 81.5 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119871816|ref|YP_929823.1| - 4.4e-12 46.9 46.1 0.00015 22.4 46.1 4.4 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|119871816|ref|YP_929823.1| - 7.2e-12 44.8 25.6 2.4e-09 36.5 4.4 3.7 3 1 0 3 3 3 2 AAA domain AAA_21 PF13304.6 gi|119871816|ref|YP_929823.1| - 1e-11 45.2 9.7 1.7e-05 24.8 0.6 3.2 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119871816|ref|YP_929823.1| - 2.5e-10 40.6 12.4 2.1e-06 27.7 3.9 3.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|119871816|ref|YP_929823.1| - 7.5e-07 28.8 0.0 1.3e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|119871816|ref|YP_929823.1| - 4.3e-06 27.3 3.9 0.037 14.6 0.0 4.1 3 2 0 3 3 3 2 ABC transporter Spc7 PF08317.11 gi|119871816|ref|YP_929823.1| - 6.4e-05 22.0 52.5 0.0095 14.8 10.6 4.1 2 2 2 4 4 4 3 Spc7 kinetochore protein AAA_27 PF13514.6 gi|119871816|ref|YP_929823.1| - 0.00025 20.7 0.0 0.00025 20.7 0.0 3.6 3 1 0 4 4 4 1 AAA domain AAA_16 PF13191.6 gi|119871816|ref|YP_929823.1| - 0.00042 20.8 0.0 0.00042 20.8 0.0 4.4 2 2 1 3 3 2 1 AAA ATPase domain Rad50_zn_hook PF04423.14 gi|119871816|ref|YP_929823.1| - 0.0013 18.6 0.1 0.0013 18.6 0.1 7.1 8 0 0 8 8 7 1 Rad50 zinc hook motif Baculo_PEP_C PF04513.12 gi|119871816|ref|YP_929823.1| - 0.0013 18.7 11.0 0.19 11.8 0.8 4.5 3 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus CdvA PF18822.1 gi|119871816|ref|YP_929823.1| - 0.006 16.4 9.2 0.006 16.4 9.2 4.5 2 2 1 3 3 3 1 CdvA-like coiled-coil domain GAS PF13851.6 gi|119871816|ref|YP_929823.1| - 0.0097 15.3 10.0 0.0097 15.3 10.0 4.0 2 2 1 4 4 4 2 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|119871816|ref|YP_929823.1| - 0.013 15.5 23.9 0.41 10.7 0.6 5.3 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) WASH_WAHD PF11945.8 gi|119871816|ref|YP_929823.1| - 0.017 14.7 1.2 0.017 14.7 1.2 3.0 2 2 0 2 2 2 0 WAHD domain of WASH complex AAA_5 PF07728.14 gi|119871816|ref|YP_929823.1| - 0.018 15.0 4.7 2.5 8.1 0.2 3.5 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|119871816|ref|YP_929823.1| - 0.021 15.1 0.9 8.3 6.7 0.0 3.0 3 0 0 3 3 2 0 AAA domain MAD PF05557.13 gi|119871816|ref|YP_929823.1| - 0.023 13.1 42.5 0.0047 15.4 12.8 2.3 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF3087 PF11286.8 gi|119871816|ref|YP_929823.1| - 0.024 14.1 0.1 0.024 14.1 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3087) SbcCD_C PF13558.6 gi|119871816|ref|YP_929823.1| - 0.035 14.3 0.0 0.088 13.0 0.0 1.7 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NPV_P10 PF05531.12 gi|119871816|ref|YP_929823.1| - 0.059 13.8 13.6 3.8 8.0 0.1 5.3 4 2 1 5 5 4 0 Nucleopolyhedrovirus P10 protein DUF4988 PF16378.5 gi|119871816|ref|YP_929823.1| - 0.069 12.8 3.7 0.4 10.3 0.2 2.9 3 0 0 3 3 2 0 Domain of unknown function Syntaxin-6_N PF09177.11 gi|119871816|ref|YP_929823.1| - 0.094 13.3 31.0 0.12 12.9 3.1 5.7 2 2 3 5 5 5 0 Syntaxin 6, N-terminal CENP-F_leu_zip PF10473.9 gi|119871816|ref|YP_929823.1| - 0.097 12.7 61.3 1.9 8.5 21.5 5.1 2 2 3 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Leu_zip PF15294.6 gi|119871816|ref|YP_929823.1| - 0.16 11.5 38.8 0.065 12.8 6.2 3.2 2 1 1 3 3 3 0 Leucine zipper DUF4795 PF16043.5 gi|119871816|ref|YP_929823.1| - 0.17 11.5 31.5 0.013 15.1 14.4 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) TPR_MLP1_2 PF07926.12 gi|119871816|ref|YP_929823.1| - 0.18 11.9 47.8 0.14 12.2 8.3 4.6 3 2 0 4 4 3 0 TPR/MLP1/MLP2-like protein AAA PF00004.29 gi|119871816|ref|YP_929823.1| - 0.19 12.2 5.9 0.57 10.6 0.0 3.9 4 0 0 4 4 4 0 ATPase family associated with various cellular activities (AAA) DUF111 PF01969.17 gi|119871816|ref|YP_929823.1| - 0.3 10.2 3.6 0.27 10.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function DUF111 Fib_alpha PF08702.10 gi|119871816|ref|YP_929823.1| - 0.33 11.1 24.5 0.27 11.4 1.2 4.6 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|119871816|ref|YP_929823.1| - 0.34 10.2 38.1 0.29 10.4 8.4 4.9 2 2 3 5 5 5 0 Protein of unknown function (DUF3450) AAA_24 PF13479.6 gi|119871816|ref|YP_929823.1| - 0.41 10.4 2.7 3 7.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain DUF812 PF05667.11 gi|119871816|ref|YP_929823.1| - 0.47 9.3 39.8 0.81 8.5 12.7 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF812) AAA_18 PF13238.6 gi|119871816|ref|YP_929823.1| - 0.55 10.8 9.4 2.3 8.8 0.0 4.3 4 1 1 5 5 2 0 AAA domain Laminin_II PF06009.12 gi|119871816|ref|YP_929823.1| - 0.56 10.2 23.6 1.8 8.6 0.7 4.9 2 2 2 5 5 5 0 Laminin Domain II V_ATPase_I PF01496.19 gi|119871816|ref|YP_929823.1| - 0.77 7.6 26.2 0.39 8.6 5.7 3.2 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family EzrA PF06160.12 gi|119871816|ref|YP_929823.1| - 0.89 7.6 38.7 0.019 13.1 6.9 3.3 2 1 1 3 3 3 0 Septation ring formation regulator, EzrA NOG1_N PF17835.1 gi|119871816|ref|YP_929823.1| - 1.1 9.2 16.5 0.87 9.5 3.3 3.7 3 1 2 5 5 5 0 NOG1 N-terminal helical domain AAA_22 PF13401.6 gi|119871816|ref|YP_929823.1| - 1.3 9.3 8.6 7.4 6.8 0.0 4.2 4 1 0 4 4 4 0 AAA domain Synaptonemal_3 PF15191.6 gi|119871816|ref|YP_929823.1| - 2.8 7.8 6.1 15 5.4 0.5 3.3 3 0 0 3 3 2 0 Synaptonemal complex central element protein 3 DUF2937 PF11157.8 gi|119871816|ref|YP_929823.1| - 2.9 7.6 6.0 2.3 7.9 0.7 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF2937) MscS_porin PF12795.7 gi|119871816|ref|YP_929823.1| - 3.6 7.1 40.2 5.3 6.5 5.9 4.1 2 1 1 3 3 3 0 Mechanosensitive ion channel porin domain KASH_CCD PF14662.6 gi|119871816|ref|YP_929823.1| - 3.8 7.3 53.0 0.048 13.5 14.4 3.5 2 2 0 3 3 3 0 Coiled-coil region of CCDC155 or KASH TelA PF05816.11 gi|119871816|ref|YP_929823.1| - 4.2 6.3 30.0 0.023 13.8 1.3 3.9 2 2 2 4 4 4 0 Toxic anion resistance protein (TelA) FliD_C PF07195.12 gi|119871816|ref|YP_929823.1| - 4.7 6.6 12.6 4.9 6.5 2.7 4.2 2 2 2 5 5 5 0 Flagellar hook-associated protein 2 C-terminus YojJ PF10372.9 gi|119871816|ref|YP_929823.1| - 5 7.3 11.8 5.3 7.2 0.3 5.1 5 1 0 5 5 4 0 Bacterial membrane-spanning protein N-terminus Sec34 PF04136.15 gi|119871816|ref|YP_929823.1| - 5.6 6.8 19.4 1.3 8.9 1.7 4.3 2 2 2 4 4 4 0 Sec34-like family DUF2730 PF10805.8 gi|119871816|ref|YP_929823.1| - 6.6 6.9 26.5 2.5 8.2 0.9 5.8 2 2 3 6 6 6 0 Protein of unknown function (DUF2730) FlaC_arch PF05377.11 gi|119871816|ref|YP_929823.1| - 6.7 7.2 40.2 4.8 7.7 0.9 7.4 6 3 1 7 7 7 0 Flagella accessory protein C (FlaC) WXG100 PF06013.12 gi|119871816|ref|YP_929823.1| - 6.9 7.0 13.2 48 4.3 0.4 5.0 4 1 0 4 4 4 0 Proteins of 100 residues with WXG DUF1993 PF09351.10 gi|119871816|ref|YP_929823.1| - 7.6 6.6 10.4 7.6 6.7 0.2 3.9 3 1 0 4 4 3 0 Domain of unknown function (DUF1993) APG6_N PF17675.1 gi|119871816|ref|YP_929823.1| - 8.4 6.9 68.9 4.8 7.7 11.8 5.3 2 2 3 5 5 5 0 Apg6 coiled-coil region SHE3 PF17078.5 gi|119871816|ref|YP_929823.1| - 9 5.9 34.1 28 4.3 14.3 4.4 3 2 1 4 4 3 0 SWI5-dependent HO expression protein 3 eRF1_2 PF03464.15 gi|119871817|ref|YP_929824.1| - 1.8e-33 115.7 0.0 3.6e-33 114.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|119871817|ref|YP_929824.1| - 6.8e-14 52.3 0.1 2.6e-13 50.4 0.0 1.9 1 1 1 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|119871817|ref|YP_929824.1| - 1.2e-13 51.5 0.0 2.5e-13 50.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|119871817|ref|YP_929824.1| - 6.1e-11 42.8 3.3 5.6e-10 39.7 3.3 2.6 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|119871817|ref|YP_929824.1| - 1.1e-05 25.4 0.0 2e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.26 gi|119871817|ref|YP_929824.1| - 0.0014 18.3 0.4 0.0033 17.1 0.4 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family SpoU_sub_bind PF08032.12 gi|119871817|ref|YP_929824.1| - 0.048 13.9 2.0 0.14 12.5 0.3 2.5 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding baeRF_family5 PF18846.1 gi|119871817|ref|YP_929824.1| - 0.064 13.5 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 DUF2529 PF10740.9 gi|119871817|ref|YP_929824.1| - 0.084 12.5 0.3 0.16 11.6 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) FAM25 PF15825.5 gi|119871817|ref|YP_929824.1| - 0.97 9.8 11.4 4.1 7.8 4.2 3.0 2 1 0 2 2 2 0 FAM25 family Ribosomal_S10 PF00338.22 gi|119871818|ref|YP_929825.1| - 1.7e-24 85.9 0.0 1.9e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|119871818|ref|YP_929825.1| - 0.015 16.1 0.0 0.025 15.4 0.0 1.3 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain SurE PF01975.17 gi|119871819|ref|YP_929826.1| - 7.3e-46 156.4 0.0 9e-46 156.1 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE HTH_24 PF13412.6 gi|119871821|ref|YP_929828.1| - 4.3e-08 32.6 0.0 7.4e-08 31.8 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119871821|ref|YP_929828.1| - 5.6e-07 29.3 0.0 7.5e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119871821|ref|YP_929828.1| - 3.1e-06 27.2 0.0 3.8e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.12 gi|119871821|ref|YP_929828.1| - 3.2e-06 27.4 0.0 3.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein MarR PF01047.22 gi|119871821|ref|YP_929828.1| - 0.00039 20.3 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|119871821|ref|YP_929828.1| - 0.0015 18.6 0.0 0.0019 18.3 0.0 1.1 1 0 0 1 1 1 1 DprA winged helix domain HTH_29 PF13551.6 gi|119871821|ref|YP_929828.1| - 0.0018 18.3 0.6 0.0029 17.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn helix Sigma70_r4 PF04545.16 gi|119871821|ref|YP_929828.1| - 0.0038 16.7 0.0 0.0067 15.9 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|119871821|ref|YP_929828.1| - 0.0068 16.2 0.1 0.012 15.4 0.0 1.5 1 1 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|119871821|ref|YP_929828.1| - 0.0083 16.2 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|119871821|ref|YP_929828.1| - 0.01 15.7 0.0 0.013 15.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|119871821|ref|YP_929828.1| - 0.012 15.4 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|119871821|ref|YP_929828.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF977 PF06163.11 gi|119871821|ref|YP_929828.1| - 0.022 14.7 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_AsnC-type PF13404.6 gi|119871821|ref|YP_929828.1| - 0.029 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Replic_Relax PF13814.6 gi|119871821|ref|YP_929828.1| - 0.059 13.4 0.0 0.064 13.3 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_42 PF06224.12 gi|119871821|ref|YP_929828.1| - 0.067 12.7 0.0 0.067 12.7 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|119871821|ref|YP_929828.1| - 0.083 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_9 PF08221.11 gi|119871821|ref|YP_929828.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TYW3 PF02676.14 gi|119871822|ref|YP_929829.1| - 4.4e-28 98.1 0.0 3.1e-27 95.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase TYW3 DHDPS PF00701.22 gi|119871823|ref|YP_929830.1| - 1.6e-57 194.5 0.0 2e-57 194.1 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family UbiA PF01040.18 gi|119871824|ref|YP_929831.1| - 5.8e-48 163.4 26.6 7.3e-48 163.1 26.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5472 PF17566.2 gi|119871824|ref|YP_929831.1| - 0.05 13.6 0.1 0.12 12.3 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5472) PmbA_TldD PF01523.16 gi|119871826|ref|YP_929833.1| - 3.8e-47 161.4 0.0 4.9e-47 161.1 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Exonuc_VII_S PF02609.16 gi|119871826|ref|YP_929833.1| - 0.13 12.3 0.1 0.28 11.3 0.1 1.5 1 0 0 1 1 1 0 Exonuclease VII small subunit PmbA_TldD PF01523.16 gi|119871827|ref|YP_929834.1| - 1.2e-25 91.0 0.0 5e-25 88.9 0.0 1.8 2 0 0 2 2 2 1 Putative modulator of DNA gyrase ABC_tran PF00005.27 gi|119871828|ref|YP_929835.1| - 1.1e-32 113.4 0.0 1.4e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871828|ref|YP_929835.1| - 3e-13 50.2 0.4 6.9e-07 29.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119871828|ref|YP_929835.1| - 7.5e-11 41.9 0.0 1.9e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119871828|ref|YP_929835.1| - 3.6e-05 24.4 0.2 6.1e-05 23.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119871828|ref|YP_929835.1| - 4.4e-05 23.9 0.0 6.5e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|119871828|ref|YP_929835.1| - 5.4e-05 23.1 0.0 0.001 18.8 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|119871828|ref|YP_929835.1| - 8.2e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|119871828|ref|YP_929835.1| - 0.0063 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119871828|ref|YP_929835.1| - 0.01 15.8 0.0 0.098 12.6 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase ATPase_2 PF01637.18 gi|119871828|ref|YP_929835.1| - 0.014 15.3 0.4 0.043 13.7 0.4 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea ABC_ATPase PF09818.9 gi|119871828|ref|YP_929835.1| - 0.017 14.0 1.4 0.12 11.2 0.1 2.4 1 1 1 3 3 3 0 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|119871828|ref|YP_929835.1| - 0.021 14.6 0.2 0.057 13.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|119871828|ref|YP_929835.1| - 0.038 12.9 0.0 0.06 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|119871828|ref|YP_929835.1| - 0.044 14.1 0.1 0.072 13.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|119871828|ref|YP_929835.1| - 0.05 13.7 0.0 0.068 13.2 0.0 1.4 1 1 0 1 1 1 0 Dynamin family AAA_33 PF13671.6 gi|119871828|ref|YP_929835.1| - 0.056 13.6 0.2 0.37 10.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119871828|ref|YP_929835.1| - 0.072 13.2 0.2 0.15 12.2 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|119871828|ref|YP_929835.1| - 0.077 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|119871828|ref|YP_929835.1| - 0.1 11.7 0.3 0.48 9.4 0.0 2.1 3 0 0 3 3 3 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|119871828|ref|YP_929835.1| - 0.12 11.6 0.0 0.2 10.8 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.27 gi|119871829|ref|YP_929836.1| - 1.4e-28 100.1 0.0 1.7e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119871829|ref|YP_929836.1| - 4.9e-15 56.1 0.9 1.9e-07 31.2 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BCA_ABC_TP_C PF12399.8 gi|119871829|ref|YP_929836.1| - 2e-07 30.7 0.0 4.6e-07 29.6 0.0 1.6 2 0 0 2 2 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_15 PF13175.6 gi|119871829|ref|YP_929836.1| - 2.5e-06 27.5 0.0 0.0051 16.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|119871829|ref|YP_929836.1| - 2.2e-05 24.0 0.1 0.024 14.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119871829|ref|YP_929836.1| - 0.0002 21.0 0.0 0.00036 20.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119871829|ref|YP_929836.1| - 0.00073 20.0 0.0 0.0011 19.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|119871829|ref|YP_929836.1| - 0.00077 20.0 0.0 0.00085 19.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|119871829|ref|YP_929836.1| - 0.0018 17.4 0.0 0.0026 16.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|119871829|ref|YP_929836.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|119871829|ref|YP_929836.1| - 0.0065 15.9 0.0 0.037 13.4 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|119871829|ref|YP_929836.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119871829|ref|YP_929836.1| - 0.017 14.7 0.0 0.036 13.7 0.0 1.5 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|119871829|ref|YP_929836.1| - 0.027 14.4 0.0 0.056 13.4 0.0 1.5 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|119871829|ref|YP_929836.1| - 0.03 14.0 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|119871829|ref|YP_929836.1| - 0.03 14.2 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ATP_bind_1 PF03029.17 gi|119871829|ref|YP_929836.1| - 0.032 14.0 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DLIC PF05783.11 gi|119871829|ref|YP_929836.1| - 0.044 12.6 0.0 0.06 12.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_22 PF13401.6 gi|119871829|ref|YP_929836.1| - 0.047 14.0 0.1 0.62 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.9 gi|119871829|ref|YP_929836.1| - 0.052 12.3 0.0 0.067 11.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein Zeta_toxin PF06414.12 gi|119871829|ref|YP_929836.1| - 0.057 12.7 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.23 gi|119871829|ref|YP_929836.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|119871829|ref|YP_929836.1| - 0.11 12.8 0.0 0.29 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119871829|ref|YP_929836.1| - 0.13 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DnaB_C PF03796.15 gi|119871829|ref|YP_929836.1| - 0.14 11.5 0.0 1.9 7.7 0.0 2.0 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain PhoH PF02562.16 gi|119871829|ref|YP_929836.1| - 0.14 11.6 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_18 PF13238.6 gi|119871829|ref|YP_929836.1| - 0.14 12.7 0.0 0.33 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119871829|ref|YP_929836.1| - 0.17 12.3 0.0 0.38 11.2 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119871829|ref|YP_929836.1| - 0.18 11.7 0.0 0.94 9.4 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain ATPase_2 PF01637.18 gi|119871829|ref|YP_929836.1| - 0.2 11.6 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|119871829|ref|YP_929836.1| - 0.22 11.4 0.0 0.71 9.8 0.0 1.7 2 0 0 2 2 2 0 NTPase SRPRB PF09439.10 gi|119871829|ref|YP_929836.1| - 0.23 10.9 0.0 0.47 9.9 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit G-alpha PF00503.20 gi|119871829|ref|YP_929836.1| - 0.26 10.4 0.0 0.36 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit DUF3584 PF12128.8 gi|119871829|ref|YP_929836.1| - 0.32 8.5 0.1 0.44 8.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) ANF_receptor PF01094.28 gi|119871830|ref|YP_929837.1| - 7.5e-32 110.8 0.1 9.6e-32 110.4 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|119871830|ref|YP_929837.1| - 5.7e-29 101.8 6.8 7.6e-29 101.4 6.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein HEM4 PF02602.15 gi|119871830|ref|YP_929837.1| - 0.0088 15.4 0.0 0.023 14.0 0.1 1.7 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD SPOR PF05036.13 gi|119871830|ref|YP_929837.1| - 0.017 15.5 0.9 4.9 7.6 0.2 2.7 2 0 0 2 2 2 0 Sporulation related domain DUF3798 PF12683.7 gi|119871830|ref|YP_929837.1| - 0.028 13.8 0.0 0.061 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) SMP_2 PF10144.9 gi|119871830|ref|YP_929837.1| - 0.077 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial virulence factor haemolysin BPD_transp_2 PF02653.16 gi|119871831|ref|YP_929838.1| - 2e-35 122.3 36.6 2e-35 122.3 36.6 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|119871832|ref|YP_929839.1| - 2.7e-44 151.3 34.9 3.9e-44 150.8 34.9 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC2_membrane_6 PF06182.11 gi|119871833|ref|YP_929840.1| - 0.13 12.0 12.5 0.17 11.6 12.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Ceramidase PF05875.12 gi|119871833|ref|YP_929840.1| - 0.17 11.3 4.8 0.21 11.0 4.8 1.1 1 0 0 1 1 1 0 Ceramidase FUSC_2 PF13515.6 gi|119871833|ref|YP_929840.1| - 3.4 7.8 17.2 13 6.0 17.2 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein-like EpsG PF14897.6 gi|119871833|ref|YP_929840.1| - 3.6 6.8 11.5 87 2.2 11.5 2.0 1 1 0 1 1 1 0 EpsG family DUF2070 PF09843.9 gi|119871833|ref|YP_929840.1| - 6.3 5.0 17.3 8.3 4.6 17.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) CbiQ PF02361.16 gi|119871833|ref|YP_929840.1| - 7.2 6.2 18.6 1.7e+02 1.6 18.6 2.0 1 1 0 1 1 1 0 Cobalt transport protein VirB3 PF05101.13 gi|119871833|ref|YP_929840.1| - 8.7 6.7 19.8 2.9 8.2 7.6 2.8 2 1 1 3 3 3 0 Type IV secretory pathway, VirB3-like protein Oxidored_q2 PF00420.24 gi|119871834|ref|YP_929841.1| - 4.5 7.0 15.6 1.4e+02 2.2 15.6 2.0 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|119871835|ref|YP_929842.1| - 8.9e-28 97.3 26.5 8.9e-28 97.3 26.5 2.9 2 1 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|119871836|ref|YP_929843.1| - 2.2e-23 82.9 15.1 2.2e-23 82.9 15.1 2.3 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|119871837|ref|YP_929844.1| - 1.7e-13 50.4 19.4 3.4e-13 49.5 8.4 3.4 2 1 2 4 4 4 2 Proton-conducting membrane transporter POR PF01558.18 gi|119871838|ref|YP_929845.1| - 4.5e-33 114.8 0.4 5.8e-33 114.4 0.4 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|119871838|ref|YP_929845.1| - 1.5e-14 53.1 14.6 3.2e-08 33.0 3.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119871838|ref|YP_929845.1| - 4.2e-11 42.8 5.2 7.3e-11 42.0 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119871838|ref|YP_929845.1| - 2.5e-10 40.0 13.7 3.2e-06 27.0 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119871838|ref|YP_929845.1| - 7.9e-09 36.0 7.1 2.2e-08 34.5 7.4 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119871838|ref|YP_929845.1| - 7.9e-08 33.1 8.7 0.00024 22.0 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|119871838|ref|YP_929845.1| - 3.8e-07 30.1 8.4 8.3e-07 29.0 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119871838|ref|YP_929845.1| - 9.3e-07 28.9 8.9 2.3e-05 24.5 10.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119871838|ref|YP_929845.1| - 6.6e-06 25.9 10.6 0.00061 19.7 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119871838|ref|YP_929845.1| - 7.4e-05 23.1 4.6 0.00015 22.2 4.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119871838|ref|YP_929845.1| - 0.00094 19.7 5.9 0.32 11.6 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119871838|ref|YP_929845.1| - 0.0037 18.0 9.2 0.62 10.9 1.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119871838|ref|YP_929845.1| - 0.0076 16.8 10.5 0.14 12.7 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|119871838|ref|YP_929845.1| - 0.029 15.2 5.8 0.25 12.2 1.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119871838|ref|YP_929845.1| - 0.05 14.6 15.9 0.18 12.8 6.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119871838|ref|YP_929845.1| - 0.088 13.4 14.1 1.6 9.4 2.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119871838|ref|YP_929845.1| - 0.27 11.5 4.6 4.3 7.6 0.8 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain POR_N PF01855.19 gi|119871839|ref|YP_929846.1| - 1.7e-67 227.6 0.1 2.2e-67 227.2 0.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|119871839|ref|YP_929846.1| - 2.6e-24 85.5 0.1 5.2e-24 84.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|119871839|ref|YP_929846.1| - 1.4e-07 31.4 0.0 2.9e-07 30.4 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain IMS_C PF11799.8 gi|119871839|ref|YP_929846.1| - 0.15 12.8 0.0 0.29 11.8 0.0 1.5 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain PikAIV_N PF18605.1 gi|119871839|ref|YP_929846.1| - 0.72 9.5 3.5 0.23 11.1 0.3 1.8 2 0 0 2 2 2 0 Narbonolide/10-deoxymethynolide synthase PikA4 N-terminal domain TPP_enzyme_C PF02775.21 gi|119871840|ref|YP_929847.1| - 4.8e-31 107.6 1.0 7e-31 107.1 1.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PBC PF03792.13 gi|119871840|ref|YP_929847.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 PBC domain DXP_synthase_N PF13292.6 gi|119871840|ref|YP_929847.1| - 0.15 11.3 0.4 2 7.6 0.1 2.0 1 1 1 2 2 2 0 1-deoxy-D-xylulose-5-phosphate synthase Fer4 PF00037.27 gi|119871841|ref|YP_929848.1| - 3.7e-15 55.0 12.4 1.1e-08 34.5 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119871841|ref|YP_929848.1| - 3.2e-14 53.3 18.2 5.5e-11 42.9 8.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119871841|ref|YP_929848.1| - 8e-12 45.1 18.8 9e-09 35.3 10.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119871841|ref|YP_929848.1| - 1.1e-10 41.1 12.3 4.2e-05 23.4 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119871841|ref|YP_929848.1| - 2.9e-10 40.1 6.4 4.6e-10 39.5 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119871841|ref|YP_929848.1| - 5.4e-10 40.1 5.8 0.0002 22.2 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119871841|ref|YP_929848.1| - 2.1e-09 37.3 3.0 0.00045 20.3 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119871841|ref|YP_929848.1| - 3.8e-09 36.1 11.5 5.4e-05 23.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119871841|ref|YP_929848.1| - 8e-09 35.9 1.6 0.0016 18.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119871841|ref|YP_929848.1| - 3.5e-08 33.8 4.3 0.0015 19.0 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119871841|ref|YP_929848.1| - 5.4e-07 29.6 12.3 0.0014 19.0 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119871841|ref|YP_929848.1| - 2.1e-05 25.2 7.9 0.013 16.2 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|119871841|ref|YP_929848.1| - 3.6e-05 24.4 16.8 0.0065 17.3 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119871841|ref|YP_929848.1| - 7.5e-05 23.2 9.6 0.01 16.3 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|119871841|ref|YP_929848.1| - 0.0019 18.4 10.6 0.061 13.5 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119871841|ref|YP_929848.1| - 0.0025 18.6 5.8 0.56 11.1 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain NADHdh PF00146.21 gi|119871842|ref|YP_929849.1| - 1.3e-74 251.3 22.7 1.5e-74 251.0 22.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF2160 PF09928.9 gi|119871842|ref|YP_929849.1| - 0.014 15.7 1.1 0.014 15.7 1.1 3.2 2 1 1 3 3 3 0 Predicted small integral membrane protein (DUF2160) Oxidored_q4 PF00507.19 gi|119871843|ref|YP_929850.1| - 5.4e-06 26.5 0.5 9.5e-06 25.7 0.0 1.5 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 PRD1_DD PF11087.8 gi|119871843|ref|YP_929850.1| - 0.18 11.5 0.5 0.18 11.5 0.5 3.0 3 0 0 3 3 3 0 PRD1 phage membrane DNA delivery Orf78 PF06024.12 gi|119871843|ref|YP_929850.1| - 5.9 7.3 6.5 0.53 10.6 0.4 2.1 2 1 0 2 2 2 0 Orf78 (ac78) OppC_N PF12911.7 gi|119871843|ref|YP_929850.1| - 9.7 6.3 11.3 0.92 9.5 0.2 3.1 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C Oxidored_q6 PF01058.22 gi|119871844|ref|YP_929851.1| - 2.2e-23 82.5 0.2 2.7e-23 82.2 0.2 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|119871845|ref|YP_929852.1| - 2.1e-72 243.5 0.1 3e-72 243.0 0.1 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.19 gi|119871845|ref|YP_929852.1| - 0.03 13.2 0.0 0.085 11.7 0.0 1.8 3 0 0 3 3 3 0 Nickel-dependent hydrogenase MDM31_MDM32 PF08118.11 gi|119871846|ref|YP_929853.1| - 0.0062 15.3 0.0 0.0078 14.9 0.0 1.1 1 0 0 1 1 1 1 Yeast mitochondrial distribution and morphology (MDM) proteins CtsR_C PF17727.1 gi|119871846|ref|YP_929853.1| - 0.017 15.2 0.1 0.021 15.0 0.1 1.2 1 0 0 1 1 1 0 CtsR C-terminal dimerization domain DUF2816 PF10992.8 gi|119871846|ref|YP_929853.1| - 0.043 13.7 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2816) HTH_27 PF13463.6 gi|119871846|ref|YP_929853.1| - 0.086 13.3 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Enterotoxin_b PF01376.18 gi|119871846|ref|YP_929853.1| - 0.13 12.4 0.1 0.28 11.4 0.1 1.7 1 1 0 1 1 1 0 Heat-labile enterotoxin beta chain OrfB_Zn_ribbon PF07282.11 gi|119871847|ref|YP_929854.1| - 1e-12 47.8 0.0 2.2e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119871847|ref|YP_929854.1| - 0.00055 19.5 4.1 0.0014 18.2 4.1 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|119871847|ref|YP_929854.1| - 0.016 15.2 0.6 0.028 14.4 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119871847|ref|YP_929854.1| - 0.017 14.8 2.2 0.11 12.2 2.5 2.1 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|119871847|ref|YP_929854.1| - 0.041 13.9 0.2 0.11 12.6 0.2 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|119871847|ref|YP_929854.1| - 0.047 13.8 0.8 0.11 12.7 0.8 1.6 1 0 0 1 1 1 0 Zinc ribbon domain Ribosomal_L37e PF01907.19 gi|119871847|ref|YP_929854.1| - 0.05 13.8 0.5 0.09 13.0 0.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.13 gi|119871847|ref|YP_929854.1| - 0.052 13.2 2.1 0.11 12.2 2.1 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|119871847|ref|YP_929854.1| - 0.27 11.2 1.4 1 9.4 1.4 2.0 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119871847|ref|YP_929854.1| - 0.72 9.4 0.1 0.72 9.4 0.1 2.6 2 1 2 4 4 4 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|119871847|ref|YP_929854.1| - 0.84 9.6 3.2 3.3 7.7 3.2 2.0 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|119871847|ref|YP_929854.1| - 0.97 8.9 6.6 9.9 5.7 5.9 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|119871847|ref|YP_929854.1| - 3.6 7.0 4.5 8.8 5.8 4.5 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Complex1_30kDa PF00329.19 gi|119871849|ref|YP_929856.1| - 5.7e-31 107.7 0.0 8e-31 107.2 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.22 gi|119871850|ref|YP_929857.1| - 9.7e-25 86.9 0.4 1.2e-24 86.6 0.4 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit ADH_N PF08240.12 gi|119871852|ref|YP_929859.1| - 4.7e-33 113.3 0.3 7.7e-33 112.6 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119871852|ref|YP_929859.1| - 6.8e-28 97.2 0.0 1e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|119871852|ref|YP_929859.1| - 4.6e-07 31.0 0.0 1.1e-06 29.7 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|119871852|ref|YP_929859.1| - 1.2e-06 28.1 0.1 1.9e-06 27.5 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|119871852|ref|YP_929859.1| - 1e-05 25.0 0.3 1.5e-05 24.4 0.3 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.18 gi|119871852|ref|YP_929859.1| - 0.0023 18.2 0.2 0.0038 17.5 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain UPF0146 PF03686.13 gi|119871852|ref|YP_929859.1| - 0.0025 17.7 0.2 0.0039 17.0 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) 2-Hacid_dh_C PF02826.19 gi|119871852|ref|YP_929859.1| - 0.034 13.5 0.2 0.059 12.7 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_25 PF13649.6 gi|119871852|ref|YP_929859.1| - 0.056 14.1 0.0 0.13 13.0 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Sacchrp_dh_NADP PF03435.18 gi|119871852|ref|YP_929859.1| - 0.086 13.1 0.1 0.15 12.3 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain XdhC_C PF13478.6 gi|119871852|ref|YP_929859.1| - 0.12 12.8 0.0 0.19 12.2 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain SCP2 PF02036.17 gi|119871853|ref|YP_929860.1| - 3.4e-06 27.5 0.0 5e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 SCP-2 sterol transfer family SCP_3 PF17844.1 gi|119871853|ref|YP_929860.1| - 0.17 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial SCP ortholog EcoEI_R_C PF08463.10 gi|119871854|ref|YP_929861.1| - 0.018 15.2 1.0 0.03 14.4 0.1 1.7 2 0 0 2 2 2 0 EcoEI R protein C-terminal RBFA PF02033.18 gi|119871854|ref|YP_929861.1| - 0.02 15.4 0.0 0.051 14.0 0.0 1.7 1 0 0 1 1 1 0 Ribosome-binding factor A TMEM135_C_rich PF15982.5 gi|119871854|ref|YP_929861.1| - 0.035 14.7 0.3 0.075 13.6 0.3 1.5 1 0 0 1 1 1 0 N-terminal cysteine-rich region of Transmembrane protein 135 NDUFB10 PF10249.9 gi|119871854|ref|YP_929861.1| - 0.1 13.1 0.1 0.16 12.5 0.1 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase subunit 10 THUMP PF02926.17 gi|119871855|ref|YP_929862.1| - 6.7e-17 61.9 1.4 9.4e-17 61.5 1.4 1.3 1 1 0 1 1 1 1 THUMP domain Thiamine_BP PF01910.17 gi|119871855|ref|YP_929862.1| - 0.055 13.4 0.4 0.23 11.4 0.1 2.1 1 1 1 2 2 2 0 Thiamine-binding protein Abhydrolase_1 PF00561.20 gi|119871856|ref|YP_929863.1| - 5.3e-14 52.5 0.0 1e-09 38.4 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|119871856|ref|YP_929863.1| - 4.7e-08 33.9 0.7 0.0002 22.1 0.8 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|119871856|ref|YP_929863.1| - 0.0041 16.4 0.0 0.0077 15.5 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|119871856|ref|YP_929863.1| - 0.013 15.1 0.0 0.018 14.6 0.0 1.1 1 0 0 1 1 1 0 Dienelactone hydrolase family Pterin_bind PF00809.22 gi|119871857|ref|YP_929864.1| - 3.6e-50 170.9 0.0 1.3e-37 129.8 0.0 2.0 2 0 0 2 2 2 2 Pterin binding enzyme CdhD PF03599.16 gi|119871857|ref|YP_929864.1| - 0.013 14.3 0.0 0.019 13.7 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit Usp PF00582.26 gi|119871857|ref|YP_929864.1| - 0.038 14.5 0.5 0.089 13.3 0.1 1.8 2 0 0 2 2 2 0 Universal stress protein family Radical_SAM PF04055.21 gi|119871859|ref|YP_929866.1| - 2.5e-27 96.3 0.2 5.7e-27 95.1 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|119871859|ref|YP_929866.1| - 1.1e-16 60.7 0.0 2.1e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|119871859|ref|YP_929866.1| - 7.4e-06 25.9 0.5 1.4e-05 24.9 0.5 1.5 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|119871859|ref|YP_929866.1| - 0.00012 22.2 0.7 0.00076 19.6 0.7 2.2 1 1 0 1 1 1 1 TRAM domain DUF1450 PF07293.11 gi|119871859|ref|YP_929866.1| - 0.065 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1450) tRNA-synt_1g PF09334.11 gi|119871860|ref|YP_929867.1| - 2e-154 514.1 0.0 2.4e-154 513.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|119871860|ref|YP_929867.1| - 3e-12 45.6 1.6 2e-07 29.7 0.3 3.2 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|119871860|ref|YP_929867.1| - 2.1e-06 27.8 0.1 3.9e-06 26.9 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|119871860|ref|YP_929867.1| - 3.8e-05 23.2 0.1 0.0024 17.3 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119871860|ref|YP_929867.1| - 0.039 12.9 0.0 1.2 8.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (K) DZR PF12773.7 gi|119871860|ref|YP_929867.1| - 0.16 12.0 4.1 0.31 11.1 4.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119871860|ref|YP_929867.1| - 0.75 9.6 8.5 4.8 7.0 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|119871860|ref|YP_929867.1| - 8.7 6.6 9.1 2 8.7 0.6 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain SNARE_assoc PF09335.11 gi|119871861|ref|YP_929868.1| - 3.1e-09 37.4 8.9 3.1e-09 37.4 8.9 2.4 2 1 1 3 3 3 1 SNARE associated Golgi protein DUF2062 PF09835.9 gi|119871861|ref|YP_929868.1| - 0.0012 18.7 9.6 0.0012 18.7 9.6 1.9 1 1 1 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2062) Prenyltransf PF01255.19 gi|119871862|ref|YP_929869.1| - 9.4e-64 215.0 0.0 1.1e-63 214.8 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.20 gi|119871863|ref|YP_929870.1| - 4.7e-27 93.9 0.3 5.5e-27 93.7 0.3 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Big_3_5 PF16640.5 gi|119871865|ref|YP_929872.1| - 9.7e-05 22.5 15.3 0.0019 18.3 0.1 6.4 7 1 1 8 8 8 2 Bacterial Ig-like domain (group 3) BiPBP_C PF06832.12 gi|119871865|ref|YP_929872.1| - 0.18 11.9 0.0 20 5.3 0.0 3.7 4 0 0 4 4 4 0 Penicillin-Binding Protein C-terminus Family HAD_2 PF13419.6 gi|119871866|ref|YP_929873.1| - 2.3e-11 44.1 0.0 4.2e-11 43.3 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119871866|ref|YP_929873.1| - 1.5e-07 31.9 0.0 1.4e-06 28.8 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119871866|ref|YP_929873.1| - 0.00075 19.5 0.0 0.0014 18.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|119871866|ref|YP_929873.1| - 0.0021 18.1 0.0 0.34 11.0 0.0 2.5 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119871866|ref|YP_929873.1| - 0.0022 18.4 0.1 0.013 15.9 0.0 2.0 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Fucokinase PF07959.12 gi|119871866|ref|YP_929873.1| - 0.12 11.3 0.0 0.24 10.3 0.0 1.5 1 1 1 2 2 2 0 L-fucokinase CbiA PF01656.23 gi|119871867|ref|YP_929874.1| - 9.1e-05 22.5 0.2 0.00025 21.1 0.1 1.7 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119871867|ref|YP_929874.1| - 0.0078 15.7 0.2 0.1 12.0 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|119871867|ref|YP_929874.1| - 0.0094 15.5 0.2 0.057 13.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|119871867|ref|YP_929874.1| - 0.014 15.3 3.4 0.11 12.4 0.8 2.7 2 1 1 3 3 3 0 AAA domain IF3_N PF05198.16 gi|119871867|ref|YP_929874.1| - 0.14 12.5 0.0 0.46 10.8 0.0 1.7 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ArsA_ATPase PF02374.15 gi|119871867|ref|YP_929874.1| - 0.15 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase Halogen_Hydrol PF10112.9 gi|119871868|ref|YP_929875.1| - 0.12 12.4 0.0 0.14 12.2 0.0 1.0 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein SBP_bac_3 PF00497.20 gi|119871871|ref|YP_929878.1| - 1.9e-55 187.8 0.2 2.2e-55 187.5 0.2 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|119871871|ref|YP_929878.1| - 2.6e-06 27.6 0.1 9.1e-06 25.9 0.1 1.9 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|119871871|ref|YP_929878.1| - 3.3e-06 27.2 0.4 8.9e-06 25.8 0.4 1.6 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|119871871|ref|YP_929878.1| - 4.1e-06 26.6 0.1 7.5e-05 22.4 0.1 2.1 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|119871871|ref|YP_929878.1| - 0.0057 16.0 0.0 0.17 11.2 0.0 2.3 2 0 0 2 2 2 1 LysR substrate binding domain DctP PF03480.13 gi|119871871|ref|YP_929878.1| - 0.016 14.5 0.0 0.3 10.4 0.0 2.2 1 1 1 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 FtsJ PF01728.19 gi|119871871|ref|YP_929878.1| - 0.13 12.4 0.1 0.24 11.5 0.1 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase ketoacyl-synt PF00109.26 gi|119871871|ref|YP_929878.1| - 0.15 11.6 0.7 0.83 9.2 0.1 2.3 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain DUF192 PF02643.15 gi|119871872|ref|YP_929879.1| - 3.4e-12 46.4 0.0 4.5e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Fusion_gly PF00523.18 gi|119871873|ref|YP_929880.1| - 5.3 5.2 4.9 6.8 4.8 4.9 1.1 1 0 0 1 1 1 0 Fusion glycoprotein F0 DUF4234 PF14018.6 gi|119871875|ref|YP_929882.1| - 0.00068 19.7 6.5 0.0009 19.3 2.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4234) Reg_prop PF07494.11 gi|119871875|ref|YP_929882.1| - 0.035 14.3 0.2 0.12 12.7 0.2 1.9 1 0 0 1 1 1 0 Two component regulator propeller DUF2070 PF09843.9 gi|119871875|ref|YP_929882.1| - 3 6.0 16.1 3.7 5.7 16.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) SIR2 PF02146.17 gi|119871876|ref|YP_929883.1| - 6.3e-53 179.3 0.0 7.5e-53 179.1 0.0 1.1 1 0 0 1 1 1 1 Sir2 family zf-ribbon_3 PF13248.6 gi|119871876|ref|YP_929883.1| - 0.0082 15.5 1.8 0.18 11.2 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|119871876|ref|YP_929883.1| - 0.014 15.3 1.2 0.03 14.2 1.2 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|119871876|ref|YP_929883.1| - 0.028 14.5 0.1 0.053 13.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119871876|ref|YP_929883.1| - 0.029 14.1 0.6 2.4 8.0 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119871876|ref|YP_929883.1| - 0.072 13.2 0.2 0.16 12.1 0.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|119871876|ref|YP_929883.1| - 0.081 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|119871876|ref|YP_929883.1| - 0.13 12.2 0.6 0.29 11.1 0.6 1.7 1 0 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119871876|ref|YP_929883.1| - 0.79 9.3 2.3 3.8 7.1 2.5 2.0 1 1 1 2 2 2 0 TFIIB zinc-binding DUF309 PF03745.14 gi|119871877|ref|YP_929884.1| - 1.5e-16 59.8 0.2 2.5e-16 59.1 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) ABM PF03992.16 gi|119871877|ref|YP_929884.1| - 0.092 12.9 0.0 0.23 11.6 0.0 1.7 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase CBS PF00571.28 gi|119871878|ref|YP_929885.1| - 1.6e-29 102.1 9.2 1.8e-14 53.9 0.6 2.1 2 0 0 2 2 2 2 CBS domain PRC PF05239.16 gi|119871878|ref|YP_929885.1| - 0.0083 16.2 3.8 0.09 12.9 0.0 2.7 2 1 0 2 2 2 1 PRC-barrel domain UPF0253 PF06786.12 gi|119871880|ref|YP_929887.1| - 0.049 13.9 0.0 0.097 13.0 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0253) OrfB_Zn_ribbon PF07282.11 gi|119871883|ref|YP_929890.1| - 0.0059 16.5 0.0 0.018 15.0 0.0 1.8 1 1 0 1 1 1 1 Putative transposase DNA-binding domain NTP_transferase PF00483.23 gi|119871884|ref|YP_929891.1| - 2.2e-33 115.9 0.0 2.6e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119871884|ref|YP_929891.1| - 1.9e-14 54.3 0.0 2.1e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|119871884|ref|YP_929891.1| - 9e-05 22.3 0.0 0.00056 19.7 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase PDZ PF00595.24 gi|119871884|ref|YP_929891.1| - 0.054 13.8 0.0 0.092 13.1 0.0 1.4 1 0 0 1 1 1 0 PDZ domain tRNA-synt_1c PF00749.21 gi|119871885|ref|YP_929892.1| - 1.4e-76 257.4 0.0 1.8e-76 257.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|119871885|ref|YP_929892.1| - 6.6e-22 78.2 0.0 1.6e-21 76.9 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain RESP18 PF14948.6 gi|119871885|ref|YP_929892.1| - 0.21 11.9 0.2 0.59 10.5 0.2 1.7 1 0 0 1 1 1 0 RESP18 domain DUF354 PF04007.12 gi|119871886|ref|YP_929893.1| - 3e-41 141.6 0.0 3.6e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) CcmH PF03918.14 gi|119871886|ref|YP_929893.1| - 0.044 13.1 0.1 0.076 12.3 0.1 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein AAA_18 PF13238.6 gi|119871888|ref|YP_929895.1| - 0.023 15.2 0.0 0.042 14.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain tRNA-synt_2 PF00152.20 gi|119871889|ref|YP_929896.1| - 1.9e-89 299.9 0.0 2.3e-89 299.6 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|119871889|ref|YP_929896.1| - 9.3e-15 54.4 0.4 1.7e-14 53.5 0.4 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|119871889|ref|YP_929896.1| - 0.0085 15.6 0.3 0.041 13.4 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) NAD_binding_2 PF03446.15 gi|119871891|ref|YP_929898.1| - 3.1e-16 59.9 0.0 1e-15 58.3 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|119871891|ref|YP_929898.1| - 5.7e-11 42.7 0.1 9.3e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|119871891|ref|YP_929898.1| - 3.4e-06 26.5 0.0 5.6e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|119871891|ref|YP_929898.1| - 2e-05 25.0 0.1 8.6e-05 23.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|119871891|ref|YP_929898.1| - 0.00029 20.8 0.0 0.00048 20.1 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|119871891|ref|YP_929898.1| - 0.00096 19.2 0.1 0.0016 18.5 0.1 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|119871891|ref|YP_929898.1| - 0.0052 16.4 0.0 0.0091 15.7 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|119871891|ref|YP_929898.1| - 0.027 14.9 0.0 0.052 14.1 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain Shikimate_DH PF01488.20 gi|119871891|ref|YP_929898.1| - 0.03 14.4 0.0 0.073 13.1 0.0 1.6 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase CHAD PF05235.14 gi|119871891|ref|YP_929898.1| - 0.21 11.5 0.0 0.28 11.1 0.0 1.2 1 0 0 1 1 1 0 CHAD domain Sua5_yciO_yrdC PF01300.18 gi|119871892|ref|YP_929899.1| - 4.4e-53 179.4 0.0 6.3e-53 178.9 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|119871892|ref|YP_929899.1| - 2e-27 96.4 0.0 2.8e-27 95.9 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Staph_haemo PF05480.11 gi|119871892|ref|YP_929899.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Staphylococcus haemolytic protein Methyltransf_25 PF13649.6 gi|119871893|ref|YP_929900.1| - 3.7e-11 43.6 0.0 6.3e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119871893|ref|YP_929900.1| - 5.8e-09 36.5 0.0 9.6e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119871893|ref|YP_929900.1| - 6e-08 32.7 0.0 9.2e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119871893|ref|YP_929900.1| - 3e-05 23.5 0.0 5.5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|119871893|ref|YP_929900.1| - 3.2e-05 23.8 0.0 6.7e-05 22.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|119871893|ref|YP_929900.1| - 0.00017 21.0 0.0 0.00027 20.3 0.0 1.4 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|119871893|ref|YP_929900.1| - 0.00031 20.6 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|119871893|ref|YP_929900.1| - 0.062 12.2 0.1 0.1 11.5 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|119871893|ref|YP_929900.1| - 0.11 12.1 0.0 0.74 9.3 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase small domain FtsJ PF01728.19 gi|119871893|ref|YP_929900.1| - 0.11 12.6 0.0 6.4 6.8 0.0 2.1 2 0 0 2 2 2 0 FtsJ-like methyltransferase MetW PF07021.12 gi|119871893|ref|YP_929900.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Pribosyltran_N PF13793.6 gi|119871894|ref|YP_929901.1| - 2.1e-17 63.1 0.0 4.5e-16 58.8 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|119871894|ref|YP_929901.1| - 1.2e-16 60.7 0.2 2.2e-16 59.7 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|119871894|ref|YP_929901.1| - 1.2e-09 38.4 0.0 3.9e-09 36.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|119871894|ref|YP_929901.1| - 0.021 14.4 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase PGM_PMM_IV PF00408.20 gi|119871894|ref|YP_929901.1| - 0.083 13.1 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain Hist_deacetyl PF00850.19 gi|119871895|ref|YP_929902.1| - 3.1e-68 230.5 0.0 4e-68 230.2 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain COMP PF11598.8 gi|119871896|ref|YP_929903.1| - 0.049 14.1 0.4 0.97 10.0 0.0 2.1 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein Rad50_zn_hook PF04423.14 gi|119871896|ref|YP_929903.1| - 0.28 11.0 6.4 3.3 7.6 0.3 2.2 2 0 0 2 2 2 0 Rad50 zinc hook motif Creatininase PF02633.14 gi|119871897|ref|YP_929904.1| - 1e-38 133.2 0.0 1.2e-38 132.9 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase GCH_III PF05165.12 gi|119871898|ref|YP_929905.1| - 1.4e-34 119.5 0.0 2.5e-18 66.3 0.0 2.1 1 1 1 2 2 2 2 GTP cyclohydrolase III Csm1_B PF18211.1 gi|119871898|ref|YP_929905.1| - 0.031 14.1 0.0 0.22 11.4 0.0 2.0 2 0 0 2 2 2 0 Csm1 subunit domain B RibD_C PF01872.17 gi|119871899|ref|YP_929906.1| - 4.3e-47 160.5 0.0 4.8e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain DHBP_synthase PF00926.19 gi|119871900|ref|YP_929907.1| - 1e-41 142.6 0.0 1.2e-41 142.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase HTH_IclR PF09339.10 gi|119871900|ref|YP_929907.1| - 0.25 11.2 0.8 8 6.4 0.1 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain CxxCxxCC PF03692.15 gi|119871901|ref|YP_929908.1| - 7.6e-17 61.8 1.2 1.2e-16 61.1 1.2 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain FAD_binding_3 PF01494.19 gi|119871902|ref|YP_929909.1| - 3.5e-16 59.4 0.3 6.8e-11 42.0 0.0 2.9 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|119871902|ref|YP_929909.1| - 4.6e-07 29.5 0.0 9.1e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|119871902|ref|YP_929909.1| - 1.2e-06 27.7 0.0 0.0028 16.6 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|119871902|ref|YP_929909.1| - 2.8e-06 26.7 0.1 6.3e-06 25.5 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|119871902|ref|YP_929909.1| - 4.7e-06 26.0 0.0 6.2e-06 25.6 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|119871902|ref|YP_929909.1| - 3.5e-05 22.7 0.0 5.8e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|119871902|ref|YP_929909.1| - 6.7e-05 22.1 0.0 6.7e-05 22.1 0.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|119871902|ref|YP_929909.1| - 0.0001 21.6 0.0 0.0002 20.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|119871902|ref|YP_929909.1| - 0.00026 21.1 0.3 0.0008 19.6 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|119871902|ref|YP_929909.1| - 0.00032 20.4 1.9 0.0013 18.4 0.1 2.2 1 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|119871902|ref|YP_929909.1| - 0.00036 19.9 0.1 0.00058 19.2 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|119871902|ref|YP_929909.1| - 0.00057 19.1 0.2 0.086 11.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox PF00070.27 gi|119871902|ref|YP_929909.1| - 0.00092 19.7 0.0 0.0029 18.1 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|119871902|ref|YP_929909.1| - 0.002 17.4 0.0 0.004 16.5 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|119871902|ref|YP_929909.1| - 0.029 14.9 0.0 0.082 13.4 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain QRPTase_C PF01729.19 gi|119871903|ref|YP_929910.1| - 1.7e-17 63.7 0.0 2.4e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_N PF17767.1 gi|119871903|ref|YP_929910.1| - 2e-05 25.0 0.0 0.017 15.5 0.1 2.4 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain QRPTase_N PF02749.16 gi|119871903|ref|YP_929910.1| - 0.0001 22.3 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|119871903|ref|YP_929910.1| - 0.026 15.0 0.0 0.047 14.1 0.0 1.4 1 0 0 1 1 1 0 Nicotinate phosphoribosyltransferase C-terminal domain PDDEXK_10 PF07788.11 gi|119871903|ref|YP_929910.1| - 0.13 12.2 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Helicase_C_2 PF13307.6 gi|119871904|ref|YP_929911.1| - 5.5e-26 91.8 0.0 3.5e-25 89.1 0.0 2.1 1 1 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|119871904|ref|YP_929911.1| - 3.8e-14 52.7 4.0 1.7e-13 50.5 4.0 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|119871904|ref|YP_929911.1| - 4.2e-07 29.9 1.1 1.4e-05 24.9 0.4 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|119871904|ref|YP_929911.1| - 9.4e-05 22.5 0.6 0.0091 16.0 0.1 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DUF2231 PF09990.9 gi|119871905|ref|YP_929912.1| - 0.81 10.2 5.7 1.1 9.7 5.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) Topoisom_bac PF01131.20 gi|119871906|ref|YP_929913.1| - 6e-104 348.3 0.0 7.6e-104 348.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|119871906|ref|YP_929913.1| - 7.1e-19 68.0 0.0 2.1e-18 66.5 0.0 1.9 1 0 0 1 1 1 1 Toprim domain Toprim_4 PF13662.6 gi|119871906|ref|YP_929913.1| - 0.0001 22.7 0.4 0.0029 18.0 0.1 2.6 2 0 0 2 2 2 1 Toprim domain DUF5377 PF17347.2 gi|119871906|ref|YP_929913.1| - 0.063 13.6 0.1 0.22 11.9 0.1 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5377) CdvA PF18822.1 gi|119871906|ref|YP_929913.1| - 0.077 12.8 0.6 0.2 11.5 0.6 1.7 1 0 0 1 1 1 0 CdvA-like coiled-coil domain Toprim_2 PF13155.6 gi|119871906|ref|YP_929913.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Diphthamide_syn PF01866.17 gi|119871907|ref|YP_929914.1| - 1.3e-16 60.9 0.0 1.8e-14 53.9 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DsbC_N PF10411.9 gi|119871908|ref|YP_929915.1| - 0.12 11.8 0.4 0.29 10.6 0.0 1.8 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus DUF87 PF01935.17 gi|119871909|ref|YP_929916.1| - 7.6e-40 137.4 0.0 1.1e-39 136.8 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|119871909|ref|YP_929916.1| - 2.9e-10 40.1 0.5 1.2e-09 38.2 0.3 2.2 1 1 0 1 1 1 1 HAS barrel domain AAA_10 PF12846.7 gi|119871909|ref|YP_929916.1| - 1e-07 31.3 0.0 0.00016 20.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 gi|119871909|ref|YP_929916.1| - 1.2e-07 30.8 0.1 0.0041 15.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.12 gi|119871909|ref|YP_929916.1| - 0.0015 18.2 0.0 0.011 15.4 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.9 gi|119871909|ref|YP_929916.1| - 0.074 11.9 0.0 1.3 7.8 0.0 2.4 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|119871909|ref|YP_929916.1| - 0.16 12.2 0.0 29 4.9 0.0 2.4 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|119871911|ref|YP_929918.1| - 4.4e-51 173.2 0.0 8.9e-51 172.2 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|119871911|ref|YP_929918.1| - 5.3e-38 129.8 0.3 3.2e-37 127.3 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|119871911|ref|YP_929918.1| - 6.9e-18 64.8 5.2 2.7e-17 62.9 4.3 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|119871911|ref|YP_929918.1| - 2.2e-06 27.5 2.0 5.7e-06 26.1 2.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|119871911|ref|YP_929918.1| - 3.9e-06 26.9 0.0 3.5e-05 23.8 0.0 2.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|119871911|ref|YP_929918.1| - 0.00051 19.6 0.2 0.017 14.6 0.1 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Septin PF00735.18 gi|119871911|ref|YP_929918.1| - 0.0027 17.1 0.0 0.007 15.7 0.0 1.6 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.23 gi|119871911|ref|YP_929918.1| - 0.023 14.7 0.1 3.8 7.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Gtr1_RagA PF04670.12 gi|119871911|ref|YP_929918.1| - 0.036 13.4 0.0 0.068 12.5 0.0 1.4 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region DUF5128 PF17170.4 gi|119871911|ref|YP_929918.1| - 0.055 12.6 0.0 0.081 12.1 0.0 1.2 1 0 0 1 1 1 0 6-bladed beta-propeller SRPRB PF09439.10 gi|119871911|ref|YP_929918.1| - 0.13 11.7 0.0 3.6 7.0 0.0 2.5 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit Ribosomal_L34e PF01199.18 gi|119871912|ref|YP_929919.1| - 6.7e-16 58.4 0.2 8.5e-16 58.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L34e Cytidylate_kin2 PF13189.6 gi|119871913|ref|YP_929920.1| - 1.5e-22 80.6 0.5 1.5e-10 41.5 0.6 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|119871913|ref|YP_929920.1| - 1.6e-17 63.9 1.4 8e-09 35.5 0.6 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|119871913|ref|YP_929920.1| - 6.6e-17 62.3 0.0 8.7e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|119871913|ref|YP_929920.1| - 4.6e-15 56.2 0.1 1.4e-14 54.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119871913|ref|YP_929920.1| - 4.1e-07 30.3 0.1 4.2e-05 23.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain SKI PF01202.22 gi|119871913|ref|YP_929920.1| - 8.9e-07 29.2 0.5 2.2e-05 24.6 0.5 2.3 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.18 gi|119871913|ref|YP_929920.1| - 3.5e-06 26.9 0.2 0.0039 17.0 0.0 2.2 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family ADK PF00406.22 gi|119871913|ref|YP_929920.1| - 5.7e-05 23.3 0.1 0.0002 21.5 0.0 1.8 1 1 1 2 2 2 1 Adenylate kinase AAA PF00004.29 gi|119871913|ref|YP_929920.1| - 0.00034 21.1 0.0 0.00062 20.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119871913|ref|YP_929920.1| - 0.00063 20.2 0.0 0.00073 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|119871913|ref|YP_929920.1| - 0.001 18.4 0.4 0.0019 17.5 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.6 gi|119871913|ref|YP_929920.1| - 0.0028 17.9 0.1 0.0062 16.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|119871913|ref|YP_929920.1| - 0.0029 17.5 0.3 2.5 7.9 0.0 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_24 PF13479.6 gi|119871913|ref|YP_929920.1| - 0.0032 17.2 0.2 0.0088 15.8 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|119871913|ref|YP_929920.1| - 0.0041 17.4 0.0 0.0072 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119871913|ref|YP_929920.1| - 0.0054 16.6 0.0 0.0096 15.8 0.0 1.4 1 0 0 1 1 1 1 NTPase Thymidylate_kin PF02223.17 gi|119871913|ref|YP_929920.1| - 0.0078 15.9 0.4 4.6 6.9 0.0 2.3 1 1 0 2 2 2 2 Thymidylate kinase AAA_5 PF07728.14 gi|119871913|ref|YP_929920.1| - 0.0088 16.0 0.0 0.015 15.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) KTI12 PF08433.10 gi|119871913|ref|YP_929920.1| - 0.0094 15.4 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NB-ARC PF00931.22 gi|119871913|ref|YP_929920.1| - 0.01 15.0 0.4 0.017 14.3 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.12 gi|119871913|ref|YP_929920.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|119871913|ref|YP_929920.1| - 0.015 15.3 0.0 0.046 13.7 0.0 1.7 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|119871913|ref|YP_929920.1| - 0.017 14.9 0.1 0.12 12.0 0.1 1.9 1 1 1 2 2 2 0 AAA domain CoaE PF01121.20 gi|119871913|ref|YP_929920.1| - 0.017 14.8 0.1 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 Dephospho-CoA kinase APS_kinase PF01583.20 gi|119871913|ref|YP_929920.1| - 0.042 13.7 0.0 0.062 13.2 0.0 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase AAA_11 PF13086.6 gi|119871913|ref|YP_929920.1| - 0.058 13.2 0.0 0.13 12.0 0.0 1.5 1 1 1 2 2 2 0 AAA domain CPT PF07931.12 gi|119871913|ref|YP_929920.1| - 0.07 13.0 0.0 0.69 9.7 0.0 2.0 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.18 gi|119871913|ref|YP_929920.1| - 0.071 12.8 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|119871913|ref|YP_929920.1| - 0.12 11.6 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|119871913|ref|YP_929920.1| - 0.14 12.5 0.1 0.26 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain EF_assoc_1 PF08355.12 gi|119871913|ref|YP_929920.1| - 0.16 11.6 0.0 0.41 10.3 0.0 1.7 1 1 0 1 1 1 0 EF hand associated ABC_tran PF00005.27 gi|119871913|ref|YP_929920.1| - 0.22 12.0 0.1 0.32 11.5 0.1 1.6 1 1 0 1 1 1 0 ABC transporter Pyr_redox_2 PF07992.14 gi|119871914|ref|YP_929921.1| - 8.3e-35 120.4 0.0 1.1e-34 120.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119871914|ref|YP_929921.1| - 9.9e-09 35.6 3.9 7.7e-05 23.2 0.8 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119871914|ref|YP_929921.1| - 2.9e-07 30.1 5.2 0.0002 20.7 0.1 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|119871914|ref|YP_929921.1| - 1.2e-05 24.6 8.0 0.16 11.0 1.6 3.2 3 0 0 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|119871914|ref|YP_929921.1| - 2.3e-05 23.9 2.5 0.15 11.4 2.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|119871914|ref|YP_929921.1| - 6.6e-05 22.3 2.2 0.0039 16.5 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_7 PF13241.6 gi|119871914|ref|YP_929921.1| - 0.00016 22.0 0.3 0.35 11.3 0.0 2.7 2 1 0 2 2 2 2 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|119871914|ref|YP_929921.1| - 0.00017 21.0 0.7 0.28 10.4 0.0 2.5 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_8 PF13450.6 gi|119871914|ref|YP_929921.1| - 0.00019 21.6 6.0 0.00046 20.4 0.8 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|119871914|ref|YP_929921.1| - 0.00071 18.4 3.0 0.0015 17.3 0.3 2.2 2 0 0 2 2 2 1 HI0933-like protein Shikimate_DH PF01488.20 gi|119871914|ref|YP_929921.1| - 0.0015 18.6 0.3 1.3 9.1 0.1 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|119871914|ref|YP_929921.1| - 0.0023 17.6 4.9 2.7 7.5 1.3 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase FMO-like PF00743.19 gi|119871914|ref|YP_929921.1| - 0.0029 16.1 0.0 0.27 9.6 0.0 2.1 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like Amino_oxidase PF01593.24 gi|119871914|ref|YP_929921.1| - 0.0054 16.1 0.0 2.3 7.4 0.0 2.4 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|119871914|ref|YP_929921.1| - 0.013 15.4 1.8 0.017 15.0 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|119871914|ref|YP_929921.1| - 0.021 14.2 0.1 3.2 7.1 0.0 3.0 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDE PF12483.8 gi|119871914|ref|YP_929921.1| - 0.061 12.7 0.1 0.11 11.9 0.1 1.4 1 0 0 1 1 1 0 E3 Ubiquitin ligase GIDA PF01134.22 gi|119871914|ref|YP_929921.1| - 0.086 11.9 8.5 3.8 6.5 0.7 3.6 4 0 0 4 4 4 0 Glucose inhibited division protein A Fibrillarin PF01269.17 gi|119871915|ref|YP_929922.1| - 8.6e-103 342.3 0.1 9.7e-103 342.1 0.1 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|119871915|ref|YP_929922.1| - 3.1e-07 30.4 0.0 4.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.10 gi|119871915|ref|YP_929922.1| - 0.02 14.6 0.0 0.035 13.8 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltr_RsmB-F PF01189.17 gi|119871915|ref|YP_929922.1| - 0.021 14.5 0.0 0.049 13.3 0.0 1.6 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F LBR_tudor PF09465.10 gi|119871915|ref|YP_929922.1| - 0.065 13.0 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 Lamin-B receptor of TUDOR domain Ubie_methyltran PF01209.18 gi|119871915|ref|YP_929922.1| - 0.1 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Nop PF01798.18 gi|119871916|ref|YP_929923.1| - 2.9e-68 229.8 0.0 5e-68 229.0 0.0 1.4 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin COMMD1_N PF17221.3 gi|119871916|ref|YP_929923.1| - 0.06 13.6 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 COMMD1 N-terminal domain IIGP PF05049.13 gi|119871916|ref|YP_929923.1| - 0.14 11.2 0.0 0.95 8.4 0.0 2.1 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) CYYR1 PF10873.8 gi|119871916|ref|YP_929923.1| - 8.9 6.7 6.2 14 6.1 6.2 1.3 1 0 0 1 1 1 0 Cysteine and tyrosine-rich protein 1 GatB_N PF02934.15 gi|119871917|ref|YP_929924.1| - 4.8e-65 219.6 0.0 6.9e-65 219.2 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|119871917|ref|YP_929924.1| - 3.2e-12 46.5 0.0 1e-11 44.9 0.0 1.9 1 0 0 1 1 1 1 GAD domain GatB_Yqey PF02637.18 gi|119871917|ref|YP_929924.1| - 6.1e-12 45.6 1.9 2.6e-11 43.6 1.9 2.0 1 1 0 1 1 1 1 GatB domain HTH_Tnp_1 PF01527.20 gi|119871917|ref|YP_929924.1| - 0.34 11.3 2.3 6.3 7.2 0.2 3.1 2 0 0 2 2 2 0 Transposase Sun2_CC2 PF18580.1 gi|119871917|ref|YP_929924.1| - 0.69 10.2 5.2 34 4.8 2.6 3.6 3 1 1 4 4 4 0 SUN2 coiled coil domain 2 RrnaAD PF00398.20 gi|119871918|ref|YP_929925.1| - 3.3e-43 147.7 0.0 3.9e-43 147.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|119871918|ref|YP_929925.1| - 2.3e-05 25.0 0.0 4.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119871918|ref|YP_929925.1| - 8.2e-05 23.2 0.0 0.00019 22.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|119871918|ref|YP_929925.1| - 0.0023 17.7 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|119871918|ref|YP_929925.1| - 0.0096 15.7 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119871918|ref|YP_929925.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.4 2 0 0 2 2 2 0 Methyltransferase domain ComA PF02679.15 gi|119871918|ref|YP_929925.1| - 0.049 13.1 0.0 0.37 10.2 0.0 1.9 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) Methyltransf_28 PF02636.17 gi|119871918|ref|YP_929925.1| - 0.064 12.9 0.2 0.4 10.3 0.1 2.1 2 1 0 2 2 2 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Lactamase_B_2 PF12706.7 gi|119871919|ref|YP_929926.1| - 1.2e-24 87.0 0.5 3.8e-24 85.3 0.5 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119871919|ref|YP_929926.1| - 4.5e-09 36.6 0.9 3.6e-06 27.1 0.1 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|119871919|ref|YP_929926.1| - 0.0079 16.1 0.6 0.092 12.6 0.6 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain RepA_C PF04796.12 gi|119871919|ref|YP_929926.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Plasmid encoded RepA protein DUF4224 PF13986.6 gi|119871919|ref|YP_929926.1| - 0.13 12.1 0.0 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) Methyltransf_11 PF08241.12 gi|119871920|ref|YP_929927.1| - 6.2e-15 55.6 0.0 9.8e-15 55.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119871920|ref|YP_929927.1| - 1.9e-12 47.7 0.1 3.8e-12 46.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119871920|ref|YP_929927.1| - 5e-11 42.7 0.0 7.5e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119871920|ref|YP_929927.1| - 7.5e-10 38.8 0.0 2.4e-09 37.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119871920|ref|YP_929927.1| - 1.5e-06 28.9 0.0 4.4e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|119871920|ref|YP_929927.1| - 0.00013 21.3 0.0 0.00043 19.7 0.0 1.7 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase FtsJ PF01728.19 gi|119871920|ref|YP_929927.1| - 0.0011 19.1 0.0 0.04 14.0 0.0 2.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|119871920|ref|YP_929927.1| - 0.0043 16.4 0.0 0.012 14.9 0.0 1.7 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.14 gi|119871920|ref|YP_929927.1| - 0.11 11.9 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_9 PF08003.11 gi|119871920|ref|YP_929927.1| - 0.12 11.3 0.1 0.29 10.0 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) MTS PF05175.14 gi|119871920|ref|YP_929927.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|119871920|ref|YP_929927.1| - 0.14 11.9 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) T2SSE PF00437.20 gi|119871921|ref|YP_929928.1| - 2e-13 50.0 0.2 4.1e-13 49.0 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|119871921|ref|YP_929928.1| - 0.00017 22.1 0.0 0.00045 20.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119871921|ref|YP_929928.1| - 0.00039 20.9 0.0 0.00097 19.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|119871921|ref|YP_929928.1| - 0.00067 19.7 0.0 0.003 17.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|119871921|ref|YP_929928.1| - 0.0025 18.0 0.0 0.053 13.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|119871921|ref|YP_929928.1| - 0.0092 15.6 1.1 0.045 13.3 1.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|119871921|ref|YP_929928.1| - 0.0095 16.2 0.0 0.019 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|119871921|ref|YP_929928.1| - 0.011 15.1 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|119871921|ref|YP_929928.1| - 0.012 15.9 0.0 0.037 14.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119871921|ref|YP_929928.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Thymidylate_kin PF02223.17 gi|119871921|ref|YP_929928.1| - 0.019 14.6 0.0 0.054 13.2 0.0 1.7 1 1 0 1 1 1 0 Thymidylate kinase AAA_30 PF13604.6 gi|119871921|ref|YP_929928.1| - 0.02 14.6 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|119871921|ref|YP_929928.1| - 0.021 14.5 0.0 0.06 13.1 0.0 1.8 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|119871921|ref|YP_929928.1| - 0.022 15.2 0.0 0.064 13.7 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|119871921|ref|YP_929928.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|119871921|ref|YP_929928.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DnaB_C PF03796.15 gi|119871921|ref|YP_929928.1| - 0.022 14.1 0.1 0.054 12.8 0.0 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain ATP_bind_1 PF03029.17 gi|119871921|ref|YP_929928.1| - 0.026 14.3 0.0 0.049 13.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|119871921|ref|YP_929928.1| - 0.027 14.4 0.0 0.057 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|119871921|ref|YP_929928.1| - 0.03 14.9 0.0 0.061 13.8 0.0 1.5 1 0 0 1 1 1 0 ABC transporter TsaE PF02367.17 gi|119871921|ref|YP_929928.1| - 0.035 14.1 0.0 0.076 13.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE FtsK_SpoIIIE PF01580.18 gi|119871921|ref|YP_929928.1| - 0.038 13.3 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family SRP54 PF00448.22 gi|119871921|ref|YP_929928.1| - 0.038 13.6 0.0 0.076 12.6 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATPase PF06745.13 gi|119871921|ref|YP_929928.1| - 0.044 13.1 0.0 0.21 10.9 0.0 2.2 3 0 0 3 3 3 0 KaiC MeaB PF03308.16 gi|119871921|ref|YP_929928.1| - 0.071 12.1 0.1 0.15 11.0 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NACHT PF05729.12 gi|119871921|ref|YP_929928.1| - 0.074 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain ResIII PF04851.15 gi|119871921|ref|YP_929928.1| - 0.078 13.0 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_24 PF13479.6 gi|119871921|ref|YP_929928.1| - 0.098 12.4 0.5 0.18 11.5 0.1 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|119871921|ref|YP_929928.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.8 2 0 0 2 2 1 0 NTPase HTH_6 PF01418.17 gi|119871921|ref|YP_929928.1| - 0.12 12.3 0.0 1.5 8.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family KTI12 PF08433.10 gi|119871921|ref|YP_929928.1| - 0.14 11.5 0.0 0.49 9.8 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.23 gi|119871921|ref|YP_929928.1| - 0.18 11.9 0.0 0.32 11.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|119871921|ref|YP_929928.1| - 0.19 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0020 PF01170.18 gi|119871922|ref|YP_929929.1| - 6.8e-20 71.6 0.0 9e-19 67.9 0.0 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|119871922|ref|YP_929929.1| - 1.6e-11 44.5 0.1 2.4e-11 43.9 0.1 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|119871922|ref|YP_929929.1| - 2.3e-06 27.2 0.0 3.9e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|119871922|ref|YP_929929.1| - 0.00043 20.1 0.0 0.001 18.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119871922|ref|YP_929929.1| - 0.00083 20.0 0.0 0.0022 18.7 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119871922|ref|YP_929929.1| - 0.0031 18.1 0.1 0.044 14.4 0.0 2.7 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|119871922|ref|YP_929929.1| - 0.0056 16.3 0.0 0.014 14.9 0.0 1.7 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|119871922|ref|YP_929929.1| - 0.0095 16.7 0.0 0.023 15.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119871922|ref|YP_929929.1| - 0.022 14.6 0.0 0.055 13.3 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain EamA PF00892.20 gi|119871923|ref|YP_929930.1| - 6.8e-29 100.8 45.2 2.4e-20 73.1 18.9 2.1 2 0 0 2 2 2 2 EamA-like transporter family HTH_3 PF01381.22 gi|119871924|ref|YP_929931.1| - 1.7e-14 53.6 0.1 3.1e-14 52.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|119871924|ref|YP_929931.1| - 4.2e-13 49.4 0.0 1e-12 48.2 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119871924|ref|YP_929931.1| - 4e-10 39.6 0.0 1.2e-09 38.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|119871924|ref|YP_929931.1| - 7.6e-09 35.9 0.0 1.7e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_35 PF13693.6 gi|119871924|ref|YP_929931.1| - 0.00073 19.5 0.1 0.0019 18.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_25 PF13413.6 gi|119871924|ref|YP_929931.1| - 0.0014 18.5 0.1 0.004 17.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.16 gi|119871924|ref|YP_929931.1| - 0.0032 17.2 0.0 0.0085 15.8 0.0 1.7 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_37 PF13744.6 gi|119871924|ref|YP_929931.1| - 0.0058 16.6 0.0 0.032 14.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Cupin_2 PF07883.11 gi|119871924|ref|YP_929931.1| - 0.026 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Cupin domain HTH_IclR PF09339.10 gi|119871924|ref|YP_929931.1| - 0.073 12.9 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|119871924|ref|YP_929931.1| - 0.098 12.4 0.1 0.25 11.2 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain LysM PF01476.20 gi|119871924|ref|YP_929931.1| - 0.11 12.6 0.0 3.2 7.9 0.0 2.4 2 0 0 2 2 2 0 LysM domain CAP PF00188.26 gi|119871925|ref|YP_929932.1| - 6.2e-06 27.1 0.3 1.8e-05 25.5 0.3 1.8 1 1 0 1 1 1 1 Cysteine-rich secretory protein family ATG27 PF09451.10 gi|119871925|ref|YP_929932.1| - 0.14 11.9 0.1 0.23 11.3 0.1 1.2 1 0 0 1 1 1 0 Autophagy-related protein 27 Isochorismatase PF00857.20 gi|119871927|ref|YP_929934.1| - 3.1e-46 157.7 0.0 3.6e-46 157.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Ribonuc_L-PSP PF01042.21 gi|119871928|ref|YP_929935.1| - 3.2e-45 153.0 0.4 3.6e-45 152.9 0.4 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF494 PF04361.13 gi|119871928|ref|YP_929935.1| - 0.12 12.3 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF494) Asp_protease_2 PF13650.6 gi|119871932|ref|YP_929939.1| - 0.0059 17.2 0.0 0.0078 16.8 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|119871932|ref|YP_929939.1| - 0.01 16.4 0.0 0.026 15.1 0.0 1.6 1 1 1 2 2 2 0 gag-polyprotein putative aspartyl protease HTH_45 PF14947.6 gi|119871933|ref|YP_929940.1| - 6.7e-06 26.0 0.0 7.8e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.6 gi|119871933|ref|YP_929940.1| - 0.0009 19.0 0.2 0.0019 17.9 0.0 1.6 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.6 gi|119871933|ref|YP_929940.1| - 0.0011 19.0 0.0 0.0023 18.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|119871933|ref|YP_929940.1| - 0.0016 18.4 0.0 0.0026 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix DUF4364 PF14277.6 gi|119871933|ref|YP_929940.1| - 0.0063 16.3 0.0 0.0081 15.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|119871933|ref|YP_929940.1| - 0.023 14.6 0.0 0.031 14.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SLH PF00395.20 gi|119871933|ref|YP_929940.1| - 0.096 12.7 0.0 0.26 11.3 0.0 1.9 2 0 0 2 2 2 0 S-layer homology domain Fimbrial_K88 PF02432.15 gi|119871935|ref|YP_929942.1| - 0.11 12.5 0.8 0.29 11.1 0.1 2.0 2 0 0 2 2 2 0 Fimbrial, major and minor subunit SCAMP PF04144.13 gi|119871936|ref|YP_929943.1| - 0.027 14.8 0.1 0.059 13.7 0.1 1.5 1 0 0 1 1 1 0 SCAMP family TrmO PF01980.16 gi|119871937|ref|YP_929944.1| - 1.8e-24 86.2 0.0 2.3e-24 85.9 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O AMA-1 PF02430.15 gi|119871938|ref|YP_929945.1| - 0.098 11.6 0.0 0.11 11.5 0.0 1.0 1 0 0 1 1 1 0 Apical membrane antigen 1 CN_hydrolase PF00795.22 gi|119871939|ref|YP_929946.1| - 2.5e-16 59.8 0.1 2e-14 53.6 0.0 2.1 2 0 0 2 2 2 2 Carbon-nitrogen hydrolase TrmO PF01980.16 gi|119871940|ref|YP_929947.1| - 1.3e-25 89.9 0.0 1.5e-25 89.7 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Hexapep PF00132.24 gi|119871941|ref|YP_929948.1| - 5e-15 54.5 1.1 0.00016 21.2 0.0 4.3 3 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|119871941|ref|YP_929948.1| - 4.8e-12 46.5 0.0 1.3e-11 45.1 0.0 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|119871941|ref|YP_929948.1| - 1e-06 28.5 0.4 8.6e-05 22.2 0.4 2.4 1 1 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|119871941|ref|YP_929948.1| - 0.0043 16.8 0.4 4.4 7.1 0.1 4.0 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|119871942|ref|YP_929949.1| - 1.6e-49 167.1 0.7 6.4e-27 94.0 0.8 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|119871942|ref|YP_929949.1| - 9.5e-24 84.1 0.2 2.5e-23 82.7 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|119871942|ref|YP_929949.1| - 1.6e-18 66.8 0.0 3.1e-18 65.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|119871942|ref|YP_929949.1| - 1.1e-05 25.5 0.5 0.00016 21.7 0.1 2.9 3 1 1 4 4 4 1 SIS domain GATase_4 PF13230.6 gi|119871942|ref|YP_929949.1| - 0.0038 16.2 0.1 0.0063 15.5 0.1 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II bact-PGI_C PF10432.9 gi|119871942|ref|YP_929949.1| - 0.044 13.8 0.1 0.17 11.9 0.1 2.1 1 1 0 1 1 1 0 Bacterial phospho-glucose isomerase C-terminal SIS domain DHHA1 PF02272.19 gi|119871943|ref|YP_929950.1| - 0.0025 18.2 0.0 0.0071 16.8 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain DUF433 PF04255.14 gi|119871944|ref|YP_929951.1| - 0.0021 17.9 0.1 0.0069 16.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF433) STT3 PF02516.14 gi|119871945|ref|YP_929952.1| - 2.1e-19 69.8 27.9 3.3e-19 69.2 27.9 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Nop10p PF04135.12 gi|119871946|ref|YP_929953.1| - 3.1e-22 78.3 3.3 4.4e-22 77.9 3.3 1.2 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|119871946|ref|YP_929953.1| - 0.0027 17.6 2.3 0.0057 16.5 2.3 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.11 gi|119871946|ref|YP_929953.1| - 0.019 14.6 3.8 0.42 10.3 1.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|119871946|ref|YP_929953.1| - 0.024 14.6 0.9 0.038 14.0 0.9 1.3 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|119871946|ref|YP_929953.1| - 0.027 14.7 3.1 0.027 14.7 1.8 1.7 2 0 0 2 2 2 0 Ribosomal L32p protein family DUF1258 PF06869.12 gi|119871946|ref|YP_929953.1| - 0.035 13.6 0.0 0.035 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zf-tcix PF14952.6 gi|119871946|ref|YP_929953.1| - 0.036 13.7 6.3 0.17 11.5 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PolC_DP2 PF03833.13 gi|119871946|ref|YP_929953.1| - 0.039 11.8 0.0 0.039 11.8 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ACC PF17848.1 gi|119871946|ref|YP_929953.1| - 0.049 13.7 4.0 3.8 7.7 0.3 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain RecR PF02132.15 gi|119871946|ref|YP_929953.1| - 0.059 13.0 0.3 0.096 12.3 0.3 1.4 1 0 0 1 1 1 0 RecR protein zf-FPG_IleRS PF06827.14 gi|119871946|ref|YP_929953.1| - 0.061 13.2 1.4 0.061 13.2 1.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.6 gi|119871946|ref|YP_929953.1| - 0.1 12.4 4.8 3.7 7.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|119871946|ref|YP_929953.1| - 0.14 12.2 1.0 0.19 11.8 1.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|119871946|ref|YP_929953.1| - 0.17 11.8 5.2 0.53 10.3 0.2 2.5 3 0 0 3 3 2 0 Nudix N-terminal CpXC PF14353.6 gi|119871946|ref|YP_929953.1| - 0.23 11.5 1.8 0.41 10.7 0.5 2.0 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|119871946|ref|YP_929953.1| - 0.25 11.5 5.7 2.5 8.3 5.9 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119871946|ref|YP_929953.1| - 0.38 10.2 6.4 2.8 7.5 6.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|119871946|ref|YP_929953.1| - 0.39 9.4 0.9 0.5 9.1 0.9 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase EIF_2_alpha PF07541.12 gi|119871947|ref|YP_929954.1| - 6.3e-22 77.9 0.0 1.7e-21 76.5 0.0 1.6 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|119871947|ref|YP_929954.1| - 1.7e-05 25.0 0.2 5.2e-05 23.5 0.1 1.9 1 1 0 1 1 1 1 S1 RNA binding domain DinI PF06183.13 gi|119871947|ref|YP_929954.1| - 0.13 12.7 0.0 0.36 11.2 0.0 1.9 1 0 0 1 1 1 0 DinI-like family Ribosomal_S27e PF01667.17 gi|119871948|ref|YP_929955.1| - 1.2e-25 89.0 0.6 1.4e-25 88.8 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|119871948|ref|YP_929955.1| - 0.00015 21.2 1.0 0.0002 20.8 1.0 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 gi|119871948|ref|YP_929955.1| - 0.0042 17.1 0.2 0.0056 16.7 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon zinc_ribbon_4 PF13717.6 gi|119871948|ref|YP_929955.1| - 0.0046 16.8 1.2 0.56 10.2 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain DUF3797 PF12677.7 gi|119871948|ref|YP_929955.1| - 0.007 16.2 0.7 0.015 15.2 0.3 1.7 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) DUF35_N PF12172.8 gi|119871948|ref|YP_929955.1| - 0.0092 15.8 0.8 2.9 7.9 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RING_10 PF16685.5 gi|119871948|ref|YP_929955.1| - 0.014 15.5 0.2 0.094 12.9 0.0 1.9 2 0 0 2 2 2 0 zinc RING finger of MSL2 zf-ribbon_3 PF13248.6 gi|119871948|ref|YP_929955.1| - 0.022 14.1 0.4 0.3 10.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119871948|ref|YP_929955.1| - 0.03 14.3 0.8 0.04 13.9 0.8 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|119871948|ref|YP_929955.1| - 0.035 14.1 0.1 0.047 13.7 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|119871948|ref|YP_929955.1| - 0.053 13.3 0.6 0.71 9.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119871948|ref|YP_929955.1| - 0.067 13.3 1.1 0.17 12.0 1.1 1.7 1 1 1 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.18 gi|119871948|ref|YP_929955.1| - 0.086 12.7 1.7 1.1 9.2 1.7 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) eIF-5_eIF-2B PF01873.17 gi|119871948|ref|YP_929955.1| - 0.095 12.6 0.2 0.11 12.4 0.2 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 DUF2614 PF11023.8 gi|119871948|ref|YP_929955.1| - 0.13 12.4 0.2 0.16 12.1 0.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-NADH-PPase PF09297.11 gi|119871948|ref|YP_929955.1| - 0.52 10.0 4.1 0.56 9.9 0.4 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Desulfoferrod_N PF06397.12 gi|119871948|ref|YP_929955.1| - 0.57 9.9 7.2 3.1 7.5 0.4 2.9 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain CcmH PF03918.14 gi|119871948|ref|YP_929955.1| - 0.65 9.3 2.2 0.67 9.2 0.0 1.7 1 1 1 2 2 2 0 Cytochrome C biogenesis protein DNA_RNApol_7kD PF03604.13 gi|119871948|ref|YP_929955.1| - 0.79 9.5 5.3 4.8 7.0 0.5 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF1610 PF07754.11 gi|119871948|ref|YP_929955.1| - 1.8 8.6 6.9 6.7 6.8 1.4 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) Ribosomal_L44 PF00935.19 gi|119871949|ref|YP_929956.1| - 1.7e-25 89.2 8.7 2.3e-25 88.9 8.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-Mss51 PF13824.6 gi|119871949|ref|YP_929956.1| - 0.0011 19.0 2.6 0.76 9.9 0.7 2.1 1 1 0 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 DUF2225 PF09986.9 gi|119871949|ref|YP_929956.1| - 0.014 15.2 2.0 0.019 14.7 2.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zinc_ribbon_2 PF13240.6 gi|119871949|ref|YP_929956.1| - 0.022 14.5 3.5 2 8.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119871949|ref|YP_929956.1| - 0.025 14.3 2.3 0.35 10.6 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L33 PF00471.20 gi|119871949|ref|YP_929956.1| - 0.032 14.7 0.9 0.032 14.7 0.9 2.5 2 1 0 2 2 2 0 Ribosomal protein L33 NOB1_Zn_bind PF08772.11 gi|119871949|ref|YP_929956.1| - 0.055 13.6 6.6 0.57 10.4 1.3 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Elf1 PF05129.13 gi|119871949|ref|YP_929956.1| - 0.065 13.3 2.6 0.21 11.6 0.6 2.1 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-DNL PF05180.12 gi|119871949|ref|YP_929956.1| - 0.096 12.6 5.0 0.5 10.4 0.2 2.2 2 0 0 2 2 2 0 DNL zinc finger RecR PF02132.15 gi|119871949|ref|YP_929956.1| - 0.099 12.2 2.0 0.35 10.5 0.3 2.1 2 0 0 2 2 2 0 RecR protein RNA_POL_M_15KD PF02150.16 gi|119871949|ref|YP_929956.1| - 0.13 12.1 3.1 0.56 10.1 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|119871949|ref|YP_929956.1| - 0.15 11.5 4.0 4.7 6.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|119871949|ref|YP_929956.1| - 0.2 11.7 2.8 0.61 10.1 2.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-UDP PF14569.6 gi|119871949|ref|YP_929956.1| - 0.27 11.4 3.2 0.96 9.6 0.2 2.3 2 1 0 2 2 2 0 Zinc-binding RING-finger Lar_restr_allev PF14354.6 gi|119871949|ref|YP_929956.1| - 0.49 10.8 3.0 1.1 9.6 3.0 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|119871949|ref|YP_929956.1| - 0.95 9.1 2.7 9.7 5.9 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf_C2H2_10 PF18414.1 gi|119871949|ref|YP_929956.1| - 1.7 8.3 4.2 6.2 6.5 0.2 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger TFIIS_C PF01096.18 gi|119871949|ref|YP_929956.1| - 5.5 6.9 8.3 1.9 8.4 1.5 2.4 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) HrpB2 PF09487.10 gi|119871950|ref|YP_929957.1| - 0.14 12.6 0.0 0.27 11.7 0.0 1.4 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB2) DNA_primase_S PF01896.19 gi|119871951|ref|YP_929958.1| - 3.4e-25 89.1 0.2 1.9e-24 86.7 0.0 2.2 2 1 0 2 2 2 1 DNA primase small subunit PCNA_N PF00705.18 gi|119871952|ref|YP_929959.1| - 8.4e-15 54.6 0.2 4.1e-13 49.2 0.0 2.2 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|119871952|ref|YP_929959.1| - 7.8e-12 45.5 0.7 2.6e-11 43.8 0.2 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|119871952|ref|YP_929959.1| - 3.2e-07 30.1 0.1 4.4e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|119871952|ref|YP_929959.1| - 1.2e-06 27.9 0.7 0.00026 20.2 0.2 2.3 1 1 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Cofilin_ADF PF00241.20 gi|119871952|ref|YP_929959.1| - 0.018 14.8 0.5 0.2 11.5 0.1 2.2 2 0 0 2 2 2 0 Cofilin/tropomyosin-type actin-binding protein TFIIS_C PF01096.18 gi|119871953|ref|YP_929960.1| - 6.7e-21 73.9 8.3 8.6e-20 70.3 4.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|119871953|ref|YP_929960.1| - 4.2e-09 36.1 6.6 2.3e-07 30.6 0.1 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|119871953|ref|YP_929960.1| - 1.5e-06 28.1 4.3 0.0029 17.5 2.9 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|119871953|ref|YP_929960.1| - 6.3e-05 23.3 2.8 0.06 13.7 1.3 2.2 2 0 0 2 2 2 2 Restriction alleviation protein Lar PhnA_Zn_Ribbon PF08274.12 gi|119871953|ref|YP_929960.1| - 0.00014 21.7 1.2 0.31 11.0 0.1 2.9 2 1 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.12 gi|119871953|ref|YP_929960.1| - 0.00014 21.3 6.1 0.0079 15.7 0.3 2.9 2 2 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.7 gi|119871953|ref|YP_929960.1| - 0.00027 20.9 4.9 0.27 11.3 0.0 2.5 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|119871953|ref|YP_929960.1| - 0.0005 19.9 7.8 0.72 9.8 0.5 3.3 3 0 0 3 3 3 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119871953|ref|YP_929960.1| - 0.00071 19.6 6.3 3.7 7.7 0.1 3.3 3 0 0 3 3 3 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119871953|ref|YP_929960.1| - 0.00078 19.1 13.7 0.48 10.2 0.1 4.1 4 0 0 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119871953|ref|YP_929960.1| - 0.002 18.0 5.0 0.13 12.2 1.6 2.4 2 1 0 2 2 2 1 Putative transposase DNA-binding domain Elf1 PF05129.13 gi|119871953|ref|YP_929960.1| - 0.0025 17.8 0.8 1.5 8.9 0.1 2.3 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like UPF0547 PF10571.9 gi|119871953|ref|YP_929960.1| - 0.0028 17.7 11.8 2.1 8.5 0.2 4.0 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 zinc_ribbon_13 PF09855.9 gi|119871953|ref|YP_929960.1| - 0.0032 17.6 5.1 5.6 7.2 0.1 3.2 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Baculo_LEF5_C PF11792.8 gi|119871953|ref|YP_929960.1| - 0.0044 16.7 3.1 0.0094 15.6 0.3 2.5 2 1 1 3 3 3 1 Baculoviridae late expression factor 5 C-terminal domain DUF2387 PF09526.10 gi|119871953|ref|YP_929960.1| - 0.0048 17.0 2.8 0.9 9.7 1.4 2.4 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS91 PF14319.6 gi|119871953|ref|YP_929960.1| - 0.0053 16.8 5.8 0.087 12.9 0.1 3.0 1 1 2 3 3 3 1 Transposase zinc-binding domain HypA PF01155.19 gi|119871953|ref|YP_929960.1| - 0.0096 15.9 1.6 0.16 12.0 0.1 2.2 1 1 1 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF4379 PF14311.6 gi|119871953|ref|YP_929960.1| - 0.02 15.3 5.1 7.2 7.1 0.5 3.2 3 0 0 3 3 3 0 Probable Zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|119871953|ref|YP_929960.1| - 0.029 14.1 3.5 4.4 7.1 0.1 3.4 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119871953|ref|YP_929960.1| - 0.036 13.5 12.5 1.8 8.1 0.1 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|119871953|ref|YP_929960.1| - 0.038 13.3 11.0 0.14 11.5 0.5 2.9 2 1 1 3 3 3 0 Transcription factor zinc-finger zinc_ribbon_15 PF17032.5 gi|119871953|ref|YP_929960.1| - 0.047 14.4 3.7 1 10.1 3.7 2.4 1 1 0 1 1 1 0 zinc-ribbon family zf-Mss51 PF13824.6 gi|119871953|ref|YP_929960.1| - 0.055 13.6 5.2 2.9 8.1 1.9 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 CpXC PF14353.6 gi|119871953|ref|YP_929960.1| - 0.086 12.9 6.3 0.92 9.6 0.0 3.0 1 1 2 3 3 3 0 CpXC protein zf-NADH-PPase PF09297.11 gi|119871953|ref|YP_929960.1| - 0.097 12.4 8.1 3.9 7.2 0.1 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain IBR PF01485.21 gi|119871953|ref|YP_929960.1| - 0.11 12.7 6.1 6.1 7.1 0.1 2.8 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain zf_C2H2_10 PF18414.1 gi|119871953|ref|YP_929960.1| - 0.12 11.9 9.3 2.4 7.8 0.5 3.3 3 0 0 3 3 3 0 C2H2 type zinc-finger DNA_RNApol_7kD PF03604.13 gi|119871953|ref|YP_929960.1| - 0.3 10.8 11.7 1.1 9.0 0.2 3.3 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-tcix PF14952.6 gi|119871953|ref|YP_929960.1| - 0.32 10.7 10.0 5.6 6.7 0.2 3.4 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Zn_ribbon_SprT PF17283.2 gi|119871953|ref|YP_929960.1| - 0.33 10.9 7.6 3 7.8 0.4 3.2 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|119871953|ref|YP_929960.1| - 0.77 9.5 7.3 17 5.2 0.1 3.1 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1936 PF09151.10 gi|119871953|ref|YP_929960.1| - 1 9.3 9.7 3.8 7.5 0.2 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF1936) Rubredoxin_2 PF18073.1 gi|119871953|ref|YP_929960.1| - 1 9.1 13.0 1.8 8.4 1.8 3.3 3 0 0 3 3 3 0 Rubredoxin metal binding domain zinc_ribbon_5 PF13719.6 gi|119871953|ref|YP_929960.1| - 1.2 8.9 5.0 46 3.9 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|119871953|ref|YP_929960.1| - 1.2 9.1 9.9 1.3 9.0 2.5 2.7 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger Rubredoxin PF00301.20 gi|119871953|ref|YP_929960.1| - 1.3 9.1 9.7 18 5.5 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin zf-RING_7 PF02591.15 gi|119871953|ref|YP_929960.1| - 1.7 8.9 0.0 1.7 8.9 0.0 3.1 4 0 0 4 4 3 0 C4-type zinc ribbon domain zf-H2C2_2 PF13465.6 gi|119871953|ref|YP_929960.1| - 1.9 9.1 11.6 5.9 7.5 0.5 3.2 3 0 0 3 3 3 0 Zinc-finger double domain Nudix_N_2 PF14803.6 gi|119871953|ref|YP_929960.1| - 2.2 8.3 13.8 2.2 8.3 3.2 3.6 2 2 1 3 3 3 0 Nudix N-terminal Opy2 PF09463.10 gi|119871953|ref|YP_929960.1| - 2.3 8.6 8.1 7.8 6.9 0.1 3.2 4 0 0 4 4 3 0 Opy2 protein zf-ISL3 PF14690.6 gi|119871953|ref|YP_929960.1| - 3.4 8.4 10.8 12 6.6 0.2 3.8 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.8 gi|119871953|ref|YP_929960.1| - 4.5 7.2 11.6 21 5.1 0.2 3.5 4 0 0 4 4 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2072 PF09845.9 gi|119871953|ref|YP_929960.1| - 5.2 7.3 8.3 2.3 8.5 0.6 2.9 1 1 2 3 3 3 0 Zn-ribbon containing protein Ribosomal_S19e PF01090.19 gi|119871954|ref|YP_929961.1| - 1.7e-51 173.6 0.0 2e-51 173.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|119871954|ref|YP_929961.1| - 0.0019 18.0 0.3 0.021 14.7 0.0 2.5 3 0 0 3 3 3 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|119871954|ref|YP_929961.1| - 0.029 14.4 0.0 0.054 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix dsDNA_bind PF01984.20 gi|119871955|ref|YP_929962.1| - 1.4e-21 76.8 9.4 2.1e-21 76.3 9.4 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.12 gi|119871955|ref|YP_929962.1| - 0.00048 19.7 0.8 0.00052 19.6 0.8 1.1 1 0 0 1 1 1 1 SDA1 DUF5401 PF17380.2 gi|119871955|ref|YP_929962.1| - 0.007 14.5 5.5 0.0071 14.5 5.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5401) FHIPEP PF00771.20 gi|119871955|ref|YP_929962.1| - 0.066 11.7 2.4 0.074 11.5 2.4 1.0 1 0 0 1 1 1 0 FHIPEP family Ribosomal_L39 PF00832.20 gi|119871956|ref|YP_929963.1| - 9.5e-19 66.8 12.9 1.2e-18 66.5 12.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PcrB PF01884.17 gi|119871957|ref|YP_929964.1| - 5e-49 166.8 0.1 5.8e-49 166.6 0.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|119871957|ref|YP_929964.1| - 0.0042 16.6 0.0 0.0098 15.4 0.0 1.6 2 0 0 2 2 2 1 Histidine biosynthesis protein B12-binding PF02310.19 gi|119871957|ref|YP_929964.1| - 0.082 12.9 0.5 3.9 7.5 0.1 2.9 2 1 1 3 3 3 0 B12 binding domain Epimerase_2 PF02350.19 gi|119871957|ref|YP_929964.1| - 0.2 10.5 0.0 0.99 8.2 0.0 2.1 3 0 0 3 3 3 0 UDP-N-acetylglucosamine 2-epimerase Elf1 PF05129.13 gi|119871958|ref|YP_929965.1| - 2.8e-16 59.3 0.0 3.6e-16 59.0 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|119871958|ref|YP_929965.1| - 2.1e-05 24.8 0.3 2.6e-05 24.5 0.3 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|119871958|ref|YP_929965.1| - 8.9e-05 21.9 0.8 0.00012 21.5 0.8 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|119871958|ref|YP_929965.1| - 0.0017 18.5 0.1 0.069 13.4 0.0 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119871958|ref|YP_929965.1| - 0.002 17.4 2.4 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|119871958|ref|YP_929965.1| - 0.0049 16.7 0.4 2.7 8.0 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|119871958|ref|YP_929965.1| - 0.0074 16.0 0.1 3.6 7.4 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|119871958|ref|YP_929965.1| - 0.0077 16.1 0.7 0.017 15.0 0.7 1.6 1 1 1 2 2 2 1 SprT-like zinc ribbon domain Rubredoxin PF00301.20 gi|119871958|ref|YP_929965.1| - 0.012 15.7 0.5 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin DZR PF12773.7 gi|119871958|ref|YP_929965.1| - 0.014 15.4 0.3 0.022 14.8 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|119871958|ref|YP_929965.1| - 0.017 15.6 2.9 2.1 9.0 2.9 2.3 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain RNA_POL_M_15KD PF02150.16 gi|119871958|ref|YP_929965.1| - 0.018 14.9 0.3 0.026 14.4 0.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|119871958|ref|YP_929965.1| - 0.025 14.2 1.0 0.2 11.4 0.9 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|119871958|ref|YP_929965.1| - 0.025 14.3 1.7 0.055 13.3 1.7 1.6 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|119871958|ref|YP_929965.1| - 0.031 15.0 0.7 0.27 12.0 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|119871958|ref|YP_929965.1| - 0.035 14.2 0.9 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-HYPF PF07503.12 gi|119871958|ref|YP_929965.1| - 0.038 13.8 0.8 3.2 7.6 0.1 2.2 2 0 0 2 2 2 0 HypF finger Desulfoferrod_N PF06397.12 gi|119871958|ref|YP_929965.1| - 0.04 13.6 1.9 0.061 13.0 1.9 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_5 PF13719.6 gi|119871958|ref|YP_929965.1| - 0.041 13.6 0.2 0.075 12.8 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119871958|ref|YP_929965.1| - 0.053 13.4 0.6 0.091 12.7 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-LITAF-like PF10601.9 gi|119871958|ref|YP_929965.1| - 0.062 13.6 2.0 0.14 12.4 2.0 1.6 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119871958|ref|YP_929965.1| - 0.069 12.9 5.6 0.83 9.5 5.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119871958|ref|YP_929965.1| - 0.08 12.9 2.6 0.41 10.6 2.6 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|119871958|ref|YP_929965.1| - 0.092 12.5 3.1 3.5 7.4 0.1 2.3 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-AN1 PF01428.16 gi|119871958|ref|YP_929965.1| - 0.1 12.8 0.7 2.4 8.4 0.1 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-TFIIB PF13453.6 gi|119871958|ref|YP_929965.1| - 0.11 11.8 0.8 0.18 11.1 0.8 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger eIF-5_eIF-2B PF01873.17 gi|119871958|ref|YP_929965.1| - 0.12 12.3 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-ZPR1 PF03367.13 gi|119871958|ref|YP_929965.1| - 0.13 12.1 0.4 0.21 11.4 0.4 1.4 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zf_UBZ PF18439.1 gi|119871958|ref|YP_929965.1| - 0.16 11.6 0.4 2 8.1 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|119871958|ref|YP_929965.1| - 0.19 11.4 2.4 1 9.1 2.4 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DNA_ligase_ZBD PF03119.16 gi|119871958|ref|YP_929965.1| - 0.26 11.3 3.0 3.4 7.8 2.2 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.12 gi|119871958|ref|YP_929965.1| - 0.38 10.8 2.7 1.5 8.9 2.7 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-C2HC5 PF06221.13 gi|119871958|ref|YP_929965.1| - 0.74 9.8 3.8 1.1 9.2 0.1 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type MoeA_N PF03453.17 gi|119871959|ref|YP_929966.1| - 4e-32 111.2 0.3 6.2e-32 110.5 0.3 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|119871959|ref|YP_929966.1| - 5e-11 42.5 0.2 1.9e-10 40.6 0.2 1.9 1 1 0 1 1 1 1 Probable molybdopterin binding domain DRTGG PF07085.12 gi|119871959|ref|YP_929966.1| - 0.0094 15.7 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 DRTGG domain Pribosyltran PF00156.27 gi|119871960|ref|YP_929967.1| - 7.9e-19 67.7 0.0 1.2e-18 67.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119871960|ref|YP_929967.1| - 0.018 14.5 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase SWIM PF04434.17 gi|119871962|ref|YP_929969.1| - 0.00089 18.9 0.1 0.0015 18.1 0.1 1.3 1 0 0 1 1 1 1 SWIM zinc finger Inositol_P PF00459.25 gi|119871963|ref|YP_929970.1| - 8e-18 64.9 0.0 1.1e-17 64.5 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|119871963|ref|YP_929970.1| - 0.036 13.6 0.0 0.055 12.9 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain PRC2_HTH_1 PF18118.1 gi|119871963|ref|YP_929970.1| - 0.15 12.9 0.0 0.25 12.2 0.0 1.3 1 0 0 1 1 1 0 Polycomb repressive complex 2 tri-helical domain AAA_24 PF13479.6 gi|119871965|ref|YP_929972.1| - 1.5e-06 28.1 0.0 2.8e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|119871965|ref|YP_929972.1| - 4.6e-06 26.3 0.0 1.1e-05 25.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119871965|ref|YP_929972.1| - 1.3e-05 25.5 0.0 2.5e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119871965|ref|YP_929972.1| - 2e-05 25.0 0.0 2.6e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain ATPase PF06745.13 gi|119871965|ref|YP_929972.1| - 3.3e-05 23.3 0.0 0.0011 18.3 0.0 2.2 1 1 0 1 1 1 1 KaiC AAA PF00004.29 gi|119871965|ref|YP_929972.1| - 4.7e-05 23.8 0.0 0.00011 22.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|119871965|ref|YP_929972.1| - 0.00052 20.4 0.0 0.0009 19.6 0.0 1.6 1 1 0 1 1 1 1 RNA helicase KTI12 PF08433.10 gi|119871965|ref|YP_929972.1| - 0.0015 18.0 0.0 0.0023 17.4 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|119871965|ref|YP_929972.1| - 0.0029 18.2 0.0 0.0044 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|119871965|ref|YP_929972.1| - 0.0036 17.1 0.0 0.0053 16.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|119871965|ref|YP_929972.1| - 0.0037 17.2 0.2 0.035 14.0 0.2 2.0 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|119871965|ref|YP_929972.1| - 0.0038 17.4 0.0 0.006 16.8 0.0 1.4 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|119871965|ref|YP_929972.1| - 0.0047 16.7 0.2 0.067 12.9 0.0 2.2 1 1 1 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain MMR_HSR1 PF01926.23 gi|119871965|ref|YP_929972.1| - 0.0059 16.7 0.0 0.0077 16.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRP54 PF00448.22 gi|119871965|ref|YP_929972.1| - 0.0067 16.1 0.1 0.031 13.9 0.1 2.0 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|119871965|ref|YP_929972.1| - 0.0069 16.8 0.1 0.01 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119871965|ref|YP_929972.1| - 0.01 15.7 0.1 0.94 9.4 0.0 2.1 1 1 1 2 2 2 0 NTPase AAA_5 PF07728.14 gi|119871965|ref|YP_929972.1| - 0.012 15.6 0.0 0.031 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|119871965|ref|YP_929972.1| - 0.016 15.1 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|119871965|ref|YP_929972.1| - 0.021 14.6 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain CobU PF02283.16 gi|119871965|ref|YP_929972.1| - 0.021 14.4 0.0 0.054 13.1 0.0 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase AAA_19 PF13245.6 gi|119871965|ref|YP_929972.1| - 0.026 14.9 0.1 0.043 14.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119871965|ref|YP_929972.1| - 0.032 14.5 0.0 0.038 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|119871965|ref|YP_929972.1| - 0.038 13.2 0.0 0.041 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_23 PF13476.6 gi|119871965|ref|YP_929972.1| - 0.045 14.2 0.0 0.072 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|119871965|ref|YP_929972.1| - 0.057 12.6 0.0 0.057 12.6 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|119871965|ref|YP_929972.1| - 0.058 13.1 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|119871965|ref|YP_929972.1| - 0.06 13.4 0.0 0.076 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Ligase_CoA PF00549.19 gi|119871965|ref|YP_929972.1| - 0.06 13.2 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 CoA-ligase Zeta_toxin PF06414.12 gi|119871965|ref|YP_929972.1| - 0.064 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin T2SSE PF00437.20 gi|119871965|ref|YP_929972.1| - 0.067 12.2 0.0 0.11 11.5 0.0 1.4 1 1 0 1 1 1 0 Type II/IV secretion system protein PhoH PF02562.16 gi|119871965|ref|YP_929972.1| - 0.071 12.6 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein SMC_N PF02463.19 gi|119871965|ref|YP_929972.1| - 0.11 11.9 0.0 0.36 10.2 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Cytidylate_kin PF02224.18 gi|119871965|ref|YP_929972.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase RsgA_GTPase PF03193.16 gi|119871965|ref|YP_929972.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|119871965|ref|YP_929972.1| - 0.17 11.5 0.0 0.3 10.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|119871965|ref|YP_929972.1| - 0.19 11.1 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Hydin_ADK PF17213.3 gi|119871965|ref|YP_929972.1| - 0.2 11.9 0.0 0.28 11.5 0.0 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain IN_DBD_C PF00552.21 gi|119871966|ref|YP_929973.1| - 0.093 12.0 0.9 0.45 9.8 0.0 2.3 2 0 0 2 2 2 0 Integrase DNA binding domain TRAM PF01938.20 gi|119871967|ref|YP_929974.1| - 1.5e-14 53.7 3.4 1.8e-14 53.5 3.4 1.1 1 0 0 1 1 1 1 TRAM domain CusF_Ec PF11604.8 gi|119871967|ref|YP_929974.1| - 0.044 13.8 0.1 0.84 9.6 0.0 2.0 2 0 0 2 2 2 0 Copper binding periplasmic protein CusF CSD2 PF17876.1 gi|119871967|ref|YP_929974.1| - 0.25 11.6 3.9 1.2 9.3 0.4 2.1 1 1 1 2 2 2 0 Cold shock domain tRNA-synt_1b PF00579.25 gi|119871968|ref|YP_929975.1| - 8.6e-31 107.3 0.0 1.7e-30 106.3 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|119871968|ref|YP_929975.1| - 0.028 13.4 0.0 1.3 7.8 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) FAM194 PF14977.6 gi|119871968|ref|YP_929975.1| - 0.18 11.1 0.0 0.29 10.4 0.0 1.2 1 0 0 1 1 1 0 FAM194 protein HHH PF00633.23 gi|119871969|ref|YP_929976.1| - 9.4e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|119871970|ref|YP_929977.1| - 1.4e-16 61.3 0.0 5.3e-16 59.4 0.0 1.9 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119871970|ref|YP_929977.1| - 2e-07 31.3 0.0 4.9e-07 30.1 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119871970|ref|YP_929977.1| - 1.6e-06 28.2 0.0 2.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Matrilin_ccoil PF10393.9 gi|119871970|ref|YP_929977.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Ribosomal_L31e PF01198.19 gi|119871971|ref|YP_929978.1| - 6.6e-15 55.1 0.9 8.6e-15 54.8 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.18 gi|119871972|ref|YP_929979.1| - 3.1e-62 209.5 2.1 3.6e-62 209.3 2.1 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L18A PF01775.17 gi|119871973|ref|YP_929980.1| - 3.7e-08 33.5 0.2 6e-08 32.8 0.2 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A DpnD-PcfM PF14207.6 gi|119871973|ref|YP_929980.1| - 0.043 13.7 0.1 0.49 10.3 0.0 2.1 2 0 0 2 2 2 0 DpnD/PcfM-like protein Prefoldin PF02996.17 gi|119871974|ref|YP_929981.1| - 1.9e-22 79.4 0.2 2.3e-22 79.1 0.2 1.1 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|119871974|ref|YP_929981.1| - 5.2e-05 23.2 4.0 0.045 13.7 1.4 2.1 2 0 0 2 2 2 2 Prefoldin subunit Sec34 PF04136.15 gi|119871974|ref|YP_929981.1| - 0.016 15.1 1.6 0.47 10.3 0.1 2.1 2 0 0 2 2 2 0 Sec34-like family DUF4226 PF10774.9 gi|119871974|ref|YP_929981.1| - 0.025 14.9 0.5 0.16 12.2 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4226) DUF4446 PF14584.6 gi|119871974|ref|YP_929981.1| - 0.028 14.4 0.4 0.43 10.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) SHE3 PF17078.5 gi|119871974|ref|YP_929981.1| - 0.044 13.5 1.3 0.72 9.5 0.2 2.0 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 DUF615 PF04751.14 gi|119871974|ref|YP_929981.1| - 0.053 13.5 1.4 0.13 12.2 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF615) PspA_IM30 PF04012.12 gi|119871974|ref|YP_929981.1| - 0.078 12.5 2.6 1.4 8.5 0.1 2.0 2 0 0 2 2 2 0 PspA/IM30 family BLOC1_2 PF10046.9 gi|119871974|ref|YP_929981.1| - 0.14 12.5 3.6 3.3 8.1 0.2 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ApoL PF05461.11 gi|119871974|ref|YP_929981.1| - 0.19 11.1 2.4 0.28 10.5 0.1 1.9 2 0 0 2 2 2 0 Apolipoprotein L Seryl_tRNA_N PF02403.22 gi|119871974|ref|YP_929981.1| - 0.2 11.9 4.0 5.6 7.2 0.4 2.1 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain APG17 PF04108.12 gi|119871974|ref|YP_929981.1| - 0.22 10.6 3.9 3.5 6.6 3.9 2.0 1 1 0 1 1 1 0 Autophagy protein Apg17 PI3K_P85_iSH2 PF16454.5 gi|119871974|ref|YP_929981.1| - 0.24 11.0 4.2 1.3 8.6 0.6 2.0 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Tektin PF03148.14 gi|119871974|ref|YP_929981.1| - 0.24 10.1 7.9 0.33 9.7 1.1 2.0 2 0 0 2 2 2 0 Tektin family Synaptobrevin PF00957.21 gi|119871974|ref|YP_929981.1| - 0.29 11.0 2.2 0.21 11.4 0.4 1.7 2 0 0 2 2 2 0 Synaptobrevin NPV_P10 PF05531.12 gi|119871974|ref|YP_929981.1| - 0.32 11.5 2.1 1.6 9.3 0.3 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|119871974|ref|YP_929981.1| - 0.52 10.8 6.0 1.1 9.8 0.8 2.0 2 0 0 2 2 2 0 Apg6 coiled-coil region Spc7 PF08317.11 gi|119871974|ref|YP_929981.1| - 0.64 8.8 6.2 3.5 6.4 0.5 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein SRP54 PF00448.22 gi|119871975|ref|YP_929982.1| - 2.2e-67 226.5 0.0 3.1e-67 226.0 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|119871975|ref|YP_929982.1| - 1.3e-08 34.9 3.8 3e-08 33.8 3.8 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|119871975|ref|YP_929982.1| - 7.7e-07 29.2 0.0 1.3e-05 25.3 0.0 2.5 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|119871975|ref|YP_929982.1| - 7.3e-05 22.6 0.5 0.00012 21.9 0.0 1.6 2 0 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|119871975|ref|YP_929982.1| - 0.00013 22.0 0.1 0.00092 19.2 0.0 2.4 1 1 1 2 2 2 1 NTPase AAA_17 PF13207.6 gi|119871975|ref|YP_929982.1| - 0.0002 21.8 0.0 0.00046 20.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|119871975|ref|YP_929982.1| - 0.00034 20.9 0.1 0.00088 19.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119871975|ref|YP_929982.1| - 0.00092 19.4 0.1 0.0028 17.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|119871975|ref|YP_929982.1| - 0.0012 19.3 0.0 0.0094 16.4 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|119871975|ref|YP_929982.1| - 0.0022 17.3 0.0 0.0045 16.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|119871975|ref|YP_929982.1| - 0.005 15.9 0.3 0.047 12.7 0.0 2.4 1 1 1 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|119871975|ref|YP_929982.1| - 0.0057 17.1 0.0 0.011 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|119871975|ref|YP_929982.1| - 0.0066 16.5 0.1 0.046 13.8 0.0 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase VirC1 PF07015.11 gi|119871975|ref|YP_929982.1| - 0.011 15.0 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein AAA_22 PF13401.6 gi|119871975|ref|YP_929982.1| - 0.014 15.7 0.0 0.047 14.0 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|119871975|ref|YP_929982.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119871975|ref|YP_929982.1| - 0.021 15.2 0.0 0.037 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|119871975|ref|YP_929982.1| - 0.032 14.1 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase MipZ PF09140.11 gi|119871975|ref|YP_929982.1| - 0.036 13.4 2.3 21 4.3 0.1 3.4 2 1 2 4 4 4 0 ATPase MipZ AAA_25 PF13481.6 gi|119871975|ref|YP_929982.1| - 0.04 13.5 0.2 0.16 11.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119871975|ref|YP_929982.1| - 0.053 13.4 0.0 0.14 12.1 0.0 1.7 2 0 0 2 2 1 0 NACHT domain cobW PF02492.19 gi|119871975|ref|YP_929982.1| - 0.06 12.9 0.0 0.19 11.3 0.0 1.8 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_31 PF13614.6 gi|119871975|ref|YP_929982.1| - 0.076 12.9 0.0 0.39 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|119871975|ref|YP_929982.1| - 0.11 13.1 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter T2SSE PF00437.20 gi|119871975|ref|YP_929982.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein GTP_EFTU PF00009.27 gi|119871975|ref|YP_929982.1| - 0.16 11.5 0.0 0.33 10.5 0.0 1.5 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_23 PF13476.6 gi|119871975|ref|YP_929982.1| - 0.24 11.9 0.0 0.4 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Colicin_V PF02674.16 gi|119871976|ref|YP_929983.1| - 0.094 12.7 4.3 0.13 12.2 4.3 1.1 1 0 0 1 1 1 0 Colicin V production protein Spt5-NGN PF03439.13 gi|119871977|ref|YP_929984.1| - 1.8e-12 47.0 0.3 3.2e-12 46.2 0.3 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section Ribosomal_L11 PF00298.19 gi|119871978|ref|YP_929985.1| - 3.1e-15 56.4 0.0 4.8e-15 55.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|119871978|ref|YP_929985.1| - 0.031 14.1 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11, N-terminal domain ArgoMid PF16487.5 gi|119871978|ref|YP_929985.1| - 0.1 12.9 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 Mid domain of argonaute Ribosomal_L1 PF00687.21 gi|119871979|ref|YP_929986.1| - 4.3e-37 127.8 0.0 5.2e-37 127.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family RL10P_insert PF17777.1 gi|119871980|ref|YP_929987.1| - 1.6e-21 76.0 0.1 3.4e-21 75.0 0.1 1.6 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|119871980|ref|YP_929987.1| - 4.8e-21 74.8 0.0 1.4e-19 70.1 0.0 2.3 2 0 0 2 2 2 1 Ribosomal protein L10 GHMP_kinases_N PF00288.26 gi|119871981|ref|YP_929988.1| - 4.7e-09 36.4 0.4 8.4e-09 35.5 0.4 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119871981|ref|YP_929988.1| - 7.5e-08 32.6 0.1 3.3e-07 30.6 0.0 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|119871981|ref|YP_929988.1| - 0.03 13.9 0.0 0.076 12.6 0.0 1.7 1 0 0 1 1 1 0 Galactokinase galactose-binding signature MtN3_slv PF03083.16 gi|119871982|ref|YP_929989.1| - 0.0045 17.0 2.4 0.0051 16.8 2.1 1.3 1 1 0 1 1 1 1 Sugar efflux transporter for intercellular exchange LAB_N PF07578.11 gi|119871982|ref|YP_929989.1| - 0.011 15.8 1.4 0.012 15.7 1.4 1.3 1 1 0 1 1 1 0 Lipid A Biosynthesis N-terminal domain Imp-YgjV PF10688.9 gi|119871982|ref|YP_929989.1| - 0.031 14.1 4.2 0.054 13.3 4.2 1.5 1 1 0 1 1 1 0 Bacterial inner membrane protein Leu_leader PF08054.11 gi|119871982|ref|YP_929989.1| - 0.069 12.8 0.1 0.069 12.8 0.1 1.9 2 0 0 2 2 2 0 Leucine operon leader peptide DUF3488 PF11992.8 gi|119871982|ref|YP_929989.1| - 0.098 11.6 2.6 0.12 11.3 2.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) PNP_UDP_1 PF01048.20 gi|119871983|ref|YP_929990.1| - 4.1e-38 130.9 0.3 4.8e-38 130.7 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily GcpE PF04551.14 gi|119871983|ref|YP_929990.1| - 0.13 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 GcpE protein DUF2122 PF09895.9 gi|119871985|ref|YP_929992.1| - 3.8e-24 85.1 0.0 4.9e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) HSP20 PF00011.21 gi|119871986|ref|YP_929993.1| - 2.3e-09 37.3 0.0 3.7e-08 33.4 0.0 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|119871986|ref|YP_929993.1| - 3.6e-09 36.0 0.0 5.9e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA DrrA_P4M PF14860.6 gi|119871986|ref|YP_929993.1| - 0.024 14.5 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain DUF1681 PF07933.14 gi|119871986|ref|YP_929993.1| - 0.051 13.3 0.2 0.072 12.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1681) BPD_transp_2 PF02653.16 gi|119871987|ref|YP_929994.1| - 4.4e-37 127.7 31.4 5.6e-37 127.4 31.4 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|119871988|ref|YP_929995.1| - 3.1e-35 121.6 28.8 3.1e-35 121.6 28.8 1.9 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|119871989|ref|YP_929996.1| - 9.9e-41 139.5 0.0 1.5e-28 100.0 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119871989|ref|YP_929996.1| - 5.8e-09 36.2 0.1 0.00038 20.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|119871989|ref|YP_929996.1| - 0.0027 17.5 0.1 20 4.8 0.0 3.5 4 0 0 4 4 4 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|119871989|ref|YP_929996.1| - 0.0053 16.5 0.0 0.069 12.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119871989|ref|YP_929996.1| - 0.035 14.6 0.1 0.061 13.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119871989|ref|YP_929996.1| - 0.038 14.4 0.1 0.14 12.6 0.0 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|119871989|ref|YP_929996.1| - 0.05 13.3 0.2 0.37 10.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain RsgA_GTPase PF03193.16 gi|119871989|ref|YP_929996.1| - 0.064 13.2 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase TsaE PF02367.17 gi|119871989|ref|YP_929996.1| - 0.066 13.2 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|119871989|ref|YP_929996.1| - 0.14 12.4 0.0 0.48 10.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|119871989|ref|YP_929996.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 gi|119871989|ref|YP_929996.1| - 0.15 11.9 0.1 0.38 10.6 0.1 1.7 1 0 0 1 1 1 0 NACHT domain Rad17 PF03215.15 gi|119871989|ref|YP_929996.1| - 0.18 11.7 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain SMC_N PF02463.19 gi|119871989|ref|YP_929996.1| - 0.2 11.1 0.0 7.5 5.9 0.0 3.0 3 1 0 4 4 4 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119871989|ref|YP_929996.1| - 0.3 10.8 0.0 1.1 8.9 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.6 gi|119871989|ref|YP_929996.1| - 0.32 9.6 0.0 0.43 9.2 0.0 1.1 1 0 0 1 1 1 0 AAA domain Bmp PF02608.14 gi|119871990|ref|YP_929997.1| - 4.6e-56 190.0 1.9 7.1e-56 189.4 1.9 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|119871990|ref|YP_929997.1| - 5.5e-05 22.9 3.2 0.00011 21.9 0.8 2.2 2 0 0 2 2 2 1 Periplasmic binding protein domain DUF4088 PF13317.6 gi|119871990|ref|YP_929997.1| - 0.022 14.3 0.0 0.055 13.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) UPF0444 PF15475.6 gi|119871990|ref|YP_929997.1| - 0.029 14.7 0.5 0.1 12.9 0.5 1.9 1 0 0 1 1 1 0 Transmembrane protein C12orf23, UPF0444 HypA PF01155.19 gi|119871992|ref|YP_929999.1| - 0.00011 22.2 0.1 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|119871992|ref|YP_929999.1| - 0.00021 21.3 0.9 0.00038 20.5 0.9 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|119871992|ref|YP_929999.1| - 0.017 15.1 2.3 0.037 14.1 2.3 1.5 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|119871992|ref|YP_929999.1| - 0.051 13.1 1.2 5.6 6.6 0.3 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|119871992|ref|YP_929999.1| - 0.11 12.4 3.1 2.9 7.8 0.2 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.12 gi|119871992|ref|YP_929999.1| - 0.12 12.3 1.9 2.9 7.9 0.5 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon ALGX PF16822.5 gi|119871992|ref|YP_929999.1| - 0.2 11.3 0.0 0.23 11.1 0.0 1.1 1 0 0 1 1 1 0 SGNH hydrolase-like domain, acetyltransferase AlgX zf-C2H2 PF00096.26 gi|119871992|ref|YP_929999.1| - 0.28 11.7 1.1 0.28 11.7 1.1 2.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type zinc_ribbon_4 PF13717.6 gi|119871992|ref|YP_929999.1| - 0.31 11.0 5.1 2.1 8.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119871992|ref|YP_929999.1| - 0.43 10.1 4.5 6.8 6.3 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|119871992|ref|YP_929999.1| - 0.44 11.2 2.8 0.76 10.5 2.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zf-trcl PF13451.6 gi|119871992|ref|YP_929999.1| - 1.1 9.2 10.0 1.7e+02 2.2 10.0 2.2 1 1 0 1 1 1 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119871992|ref|YP_929999.1| - 3.9 7.3 7.2 4 7.3 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L40e PF01020.17 gi|119871993|ref|YP_930000.1| - 8.7e-08 31.9 5.5 1e-07 31.7 5.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|119871993|ref|YP_930000.1| - 0.00076 19.1 2.7 0.001 18.7 2.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|119871993|ref|YP_930000.1| - 0.00078 19.3 1.7 0.00095 19.0 1.7 1.1 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RanBP PF00641.18 gi|119871993|ref|YP_930000.1| - 0.0017 17.6 1.6 0.0022 17.2 1.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|119871993|ref|YP_930000.1| - 0.0017 18.3 2.4 0.0022 17.9 2.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|119871993|ref|YP_930000.1| - 0.023 14.7 0.5 0.024 14.6 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|119871993|ref|YP_930000.1| - 0.032 13.6 2.6 0.041 13.3 2.6 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf_C2H2_13 PF18508.1 gi|119871993|ref|YP_930000.1| - 0.04 13.5 0.1 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 Zinc finger domain DHHC PF01529.20 gi|119871993|ref|YP_930000.1| - 0.37 10.9 3.4 0.42 10.7 3.4 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase ABC_tran PF00005.27 gi|119871994|ref|YP_930001.1| - 0.0018 18.8 0.0 0.0042 17.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|119871994|ref|YP_930001.1| - 0.0024 18.3 0.4 0.019 15.4 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.6 gi|119871994|ref|YP_930001.1| - 0.012 16.2 0.0 0.042 14.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|119871994|ref|YP_930001.1| - 0.015 15.6 0.0 0.098 12.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119871994|ref|YP_930001.1| - 0.018 15.1 0.0 0.036 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|119871994|ref|YP_930001.1| - 0.039 13.6 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|119871994|ref|YP_930001.1| - 0.075 12.2 0.0 0.18 10.9 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|119871994|ref|YP_930001.1| - 0.079 12.9 0.0 0.62 10.0 0.0 2.2 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.6 gi|119871994|ref|YP_930001.1| - 0.098 12.8 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Sigma-54 interaction domain TsaE PF02367.17 gi|119871994|ref|YP_930001.1| - 0.1 12.6 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|119871994|ref|YP_930001.1| - 0.11 11.9 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA PF00004.29 gi|119871994|ref|YP_930001.1| - 0.12 12.8 0.0 0.37 11.2 0.0 1.9 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|119871994|ref|YP_930001.1| - 0.13 12.7 0.0 0.38 11.1 0.0 1.8 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.17 gi|119871994|ref|YP_930001.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein FeoB_N PF02421.18 gi|119871995|ref|YP_930002.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.3 1 1 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|119871995|ref|YP_930002.1| - 0.017 14.7 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Ras family PduV-EutP PF10662.9 gi|119871995|ref|YP_930002.1| - 0.041 13.6 0.1 0.16 11.7 0.1 1.9 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|119871995|ref|YP_930002.1| - 0.056 13.5 0.0 0.079 13.1 0.0 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase MS_channel PF00924.18 gi|119871996|ref|YP_930003.1| - 3.5e-19 69.2 7.5 1.2e-18 67.5 7.4 1.9 1 1 0 1 1 1 1 Mechanosensitive ion channel NERD PF08378.11 gi|119871997|ref|YP_930004.1| - 0.12 12.8 0.0 0.64 10.5 0.0 2.1 2 0 0 2 2 2 0 Nuclease-related domain Hjc PF01870.18 gi|119871997|ref|YP_930004.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) Succ_CoA_lig PF13607.6 gi|119871998|ref|YP_930005.1| - 2.2e-49 166.8 0.4 8.8e-48 161.6 0.1 3.0 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|119871998|ref|YP_930005.1| - 3.8e-22 79.0 0.8 2.6e-21 76.3 0.3 2.6 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|119871998|ref|YP_930005.1| - 4.6e-09 36.8 0.1 1.8e-08 34.9 0.1 2.0 2 0 0 2 2 2 1 CoA binding domain DUF348 PF03990.14 gi|119871998|ref|YP_930005.1| - 0.018 14.8 0.1 1.5 8.6 0.0 3.1 3 0 0 3 3 3 0 G5-linked-Ubiquitin-like domain Rhodanese PF00581.20 gi|119871998|ref|YP_930005.1| - 0.09 13.3 0.0 2.2 8.8 0.0 2.6 1 1 1 2 2 2 0 Rhodanese-like domain Peripla_BP_3 PF13377.6 gi|119871998|ref|YP_930005.1| - 0.096 13.0 0.1 8.5 6.7 0.0 2.7 2 0 0 2 2 2 0 Periplasmic binding protein-like domain ATP-grasp_5 PF13549.6 gi|119871999|ref|YP_930006.1| - 1.9e-80 269.5 0.8 2.1e-80 269.3 0.8 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|119871999|ref|YP_930006.1| - 9.1e-05 22.1 0.6 0.00013 21.6 0.6 1.3 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|119871999|ref|YP_930006.1| - 0.00038 20.1 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp PF02222.22 gi|119871999|ref|YP_930006.1| - 0.005 16.4 0.0 0.013 15.0 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|119871999|ref|YP_930006.1| - 0.0053 16.3 0.0 0.0078 15.7 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|119871999|ref|YP_930006.1| - 0.0058 16.4 0.2 0.012 15.4 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF1851 PF08906.11 gi|119871999|ref|YP_930006.1| - 0.044 13.7 0.0 0.088 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1851) CNRIP1 PF15043.6 gi|119871999|ref|YP_930006.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 CB1 cannabinoid receptor-interacting protein 1 Rad51 PF08423.11 gi|119872000|ref|YP_930007.1| - 1.3e-40 139.2 0.0 2.3e-40 138.5 0.0 1.4 1 1 1 2 2 2 1 Rad51 ATPase PF06745.13 gi|119872000|ref|YP_930007.1| - 6.5e-12 45.3 0.1 2.3e-11 43.5 0.1 1.8 1 1 0 1 1 1 1 KaiC RecA PF00154.21 gi|119872000|ref|YP_930007.1| - 3.6e-08 33.2 0.0 4.9e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.6 gi|119872000|ref|YP_930007.1| - 3.9e-08 33.1 0.0 6.6e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|119872000|ref|YP_930007.1| - 9.6e-06 26.1 0.1 2.1e-05 25.0 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_24 PF13479.6 gi|119872000|ref|YP_930007.1| - 4e-05 23.4 0.0 6.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|119872000|ref|YP_930007.1| - 0.0022 17.8 0.0 0.011 15.6 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|119872000|ref|YP_930007.1| - 0.0038 17.4 0.0 0.0073 16.5 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|119872000|ref|YP_930007.1| - 0.0075 16.1 0.0 0.044 13.6 0.0 2.3 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|119872000|ref|YP_930007.1| - 0.0094 16.2 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PhoH PF02562.16 gi|119872000|ref|YP_930007.1| - 0.028 13.9 0.1 0.076 12.5 0.0 1.7 1 1 0 1 1 1 0 PhoH-like protein DnaB_C PF03796.15 gi|119872000|ref|YP_930007.1| - 0.035 13.4 0.0 1.2 8.4 0.0 2.1 1 1 1 2 2 2 0 DnaB-like helicase C terminal domain SAM_2 PF07647.17 gi|119872000|ref|YP_930007.1| - 0.039 14.1 0.0 0.08 13.1 0.0 1.6 1 0 0 1 1 1 0 SAM domain (Sterile alpha motif) AAA PF00004.29 gi|119872000|ref|YP_930007.1| - 0.064 13.7 0.0 0.72 10.3 0.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2791 PF10923.8 gi|119872000|ref|YP_930007.1| - 0.07 12.0 0.4 0.16 10.8 0.1 1.6 2 0 0 2 2 2 0 P-loop Domain of unknown function (DUF2791) Glyco_hydro_114 PF03537.13 gi|119872000|ref|YP_930007.1| - 0.12 11.7 0.0 0.23 10.7 0.0 1.4 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Acetyltransf_7 PF13508.7 gi|119872002|ref|YP_930009.1| - 5.2e-09 36.4 0.0 8.2e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|119872002|ref|YP_930009.1| - 7.6e-09 35.8 0.2 1.1e-08 35.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|119872002|ref|YP_930009.1| - 1.1e-05 25.3 0.1 2.3e-05 24.3 0.1 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|119872002|ref|YP_930009.1| - 7.5e-05 22.7 0.0 9.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119872002|ref|YP_930009.1| - 0.004 17.8 0.0 0.0053 17.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|119872002|ref|YP_930009.1| - 0.01 15.8 0.0 0.023 14.7 0.0 1.6 2 0 0 2 2 2 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|119872002|ref|YP_930009.1| - 0.011 15.8 0.1 0.033 14.3 0.1 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|119872002|ref|YP_930009.1| - 0.052 13.6 0.1 0.11 12.6 0.1 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Aldo_ket_red PF00248.21 gi|119872003|ref|YP_930010.1| - 2.7e-59 200.8 0.0 2.1e-57 194.6 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family eRF1_1 PF03463.15 gi|119872005|ref|YP_930012.1| - 1.1e-21 77.2 0.1 7.6e-21 74.4 0.0 2.1 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|119872005|ref|YP_930012.1| - 2.4e-10 40.9 0.1 1.1e-09 38.8 0.1 2.1 1 1 0 1 1 1 1 eRF1 domain 3 CSTF1_dimer PF16699.5 gi|119872006|ref|YP_930013.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 1 0 2 2 2 0 Cleavage stimulation factor subunit 1, dimerisation domain T4BSS_DotI_IcmL PF11393.8 gi|119872006|ref|YP_930013.1| - 0.11 11.9 0.0 0.12 11.8 0.0 1.0 1 0 0 1 1 1 0 Type-IV b secretion system, inner-membrane complex component Thioredoxin_4 PF13462.6 gi|119872007|ref|YP_930014.1| - 1.7e-18 67.3 0.0 2.3e-18 66.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|119872007|ref|YP_930014.1| - 0.0015 18.4 0.3 0.098 12.4 0.0 2.7 2 1 1 3 3 3 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|119872007|ref|YP_930014.1| - 0.0017 18.8 0.1 0.013 16.0 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain ODV-E18 PF10717.9 gi|119872007|ref|YP_930014.1| - 0.11 12.4 0.7 0.16 11.8 0.7 1.3 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF359 PF04019.12 gi|119872008|ref|YP_930015.1| - 6.6e-28 96.9 0.0 8.1e-28 96.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Lactamase_B_2 PF12706.7 gi|119872009|ref|YP_930016.1| - 2.8e-18 66.2 0.2 3.4e-18 65.9 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|119872009|ref|YP_930016.1| - 0.017 14.5 0.0 0.025 14.0 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119872009|ref|YP_930016.1| - 0.022 14.8 0.4 0.03 14.3 0.3 1.4 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|119872009|ref|YP_930016.1| - 0.06 13.2 0.1 0.13 12.1 0.1 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain UDPG_MGDP_dh_N PF03721.14 gi|119872010|ref|YP_930017.1| - 2.3e-36 125.1 0.9 2.8e-36 124.9 0.1 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|119872010|ref|YP_930017.1| - 9e-25 87.1 0.0 1.9e-24 86.1 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|119872010|ref|YP_930017.1| - 2e-22 79.2 0.0 3.7e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain 2-Hacid_dh_C PF02826.19 gi|119872010|ref|YP_930017.1| - 0.00056 19.3 0.1 1.1 8.6 0.0 2.5 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|119872010|ref|YP_930017.1| - 0.00092 19.8 2.4 0.59 10.7 0.0 3.6 4 0 0 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|119872010|ref|YP_930017.1| - 0.023 14.9 0.5 0.19 11.9 0.1 2.6 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|119872010|ref|YP_930017.1| - 0.066 13.2 0.5 0.34 10.9 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_DH PF01488.20 gi|119872010|ref|YP_930017.1| - 0.068 13.2 0.3 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|119872010|ref|YP_930017.1| - 0.2 11.9 2.1 12 6.2 0.1 2.8 3 0 0 3 3 3 0 TrkA-N domain POR PF01558.18 gi|119872011|ref|YP_930018.1| - 9.4e-27 94.2 1.9 2.7e-26 92.7 1.9 1.6 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|119872012|ref|YP_930019.1| - 1.2e-14 53.5 16.0 2.6e-08 33.3 5.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872012|ref|YP_930019.1| - 3.1e-12 46.4 8.4 3.7e-12 46.2 8.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119872012|ref|YP_930019.1| - 3.4e-11 42.7 12.1 7.9e-06 25.7 3.9 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119872012|ref|YP_930019.1| - 3.9e-10 40.2 8.5 8.2e-10 39.1 8.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872012|ref|YP_930019.1| - 5.5e-09 36.8 7.8 0.00013 22.8 2.3 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119872012|ref|YP_930019.1| - 7.9e-09 35.6 6.3 1e-08 35.2 6.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872012|ref|YP_930019.1| - 1.6e-08 34.1 10.3 0.00017 21.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119872012|ref|YP_930019.1| - 1.5e-07 31.5 10.1 0.00056 20.0 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872012|ref|YP_930019.1| - 2.3e-06 28.0 4.1 0.0093 16.5 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119872012|ref|YP_930019.1| - 4.7e-05 23.8 10.6 0.014 15.8 2.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872012|ref|YP_930019.1| - 0.00012 22.3 13.4 0.014 15.8 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119872012|ref|YP_930019.1| - 0.00018 21.9 11.1 0.003 18.1 1.4 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|119872012|ref|YP_930019.1| - 0.00022 21.9 10.3 0.15 12.8 0.4 2.8 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|119872012|ref|YP_930019.1| - 0.013 16.3 10.8 0.13 13.1 2.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119872012|ref|YP_930019.1| - 0.048 14.6 16.9 0.13 13.3 6.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119872012|ref|YP_930019.1| - 0.057 13.6 9.5 0.84 9.9 0.7 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF3343 PF11823.8 gi|119872012|ref|YP_930019.1| - 1.3 8.6 4.7 6.3 6.3 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3343) ETF_QO PF05187.13 gi|119872012|ref|YP_930019.1| - 4.5 7.5 7.1 4.7 7.4 0.6 1.9 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S POR_N PF01855.19 gi|119872013|ref|YP_930020.1| - 1.4e-66 224.6 0.7 1.8e-66 224.2 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|119872013|ref|YP_930020.1| - 4.7e-23 81.4 0.0 8.9e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|119872013|ref|YP_930020.1| - 2.4e-05 24.2 0.0 7.8e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|119872014|ref|YP_930021.1| - 8e-24 84.2 0.5 1.3e-23 83.5 0.2 1.5 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|119872014|ref|YP_930021.1| - 0.00097 18.4 0.0 0.0012 18.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|119872014|ref|YP_930021.1| - 0.048 12.6 0.8 0.072 12.0 0.8 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Cpn60_TCP1 PF00118.24 gi|119872015|ref|YP_930022.1| - 1.5e-182 607.7 6.8 1.7e-182 607.5 6.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.9 gi|119872015|ref|YP_930022.1| - 0.011 15.5 0.1 0.033 13.9 0.1 1.9 1 0 0 1 1 1 0 Short C-terminal domain RNA_pol_Rpb6 PF01192.22 gi|119872016|ref|YP_930023.1| - 1e-13 51.0 0.0 1.9e-13 50.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 DDE_Tnp_1_4 PF13701.6 gi|119872016|ref|YP_930023.1| - 0.1 10.9 0.0 0.12 10.6 0.0 1.0 1 0 0 1 1 1 0 Transposase DDE domain group 1 ABC_tran PF00005.27 gi|119872017|ref|YP_930024.1| - 2.6e-28 99.3 0.0 3.4e-28 98.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872017|ref|YP_930024.1| - 6.4e-12 45.9 0.6 4.1e-05 23.5 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872017|ref|YP_930024.1| - 1.7e-06 27.7 0.2 7.6e-06 25.5 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|119872017|ref|YP_930024.1| - 6.4e-05 22.9 0.3 0.00018 21.4 0.2 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_23 PF13476.6 gi|119872017|ref|YP_930024.1| - 0.00022 21.8 0.5 0.00036 21.1 0.1 1.5 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.6 gi|119872017|ref|YP_930024.1| - 0.00027 21.2 0.0 0.0013 19.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119872017|ref|YP_930024.1| - 0.0003 20.5 0.1 0.00073 19.2 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|119872017|ref|YP_930024.1| - 0.0027 17.5 0.1 0.17 11.5 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|119872017|ref|YP_930024.1| - 0.0036 17.0 0.0 0.0093 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|119872017|ref|YP_930024.1| - 0.0079 15.8 0.0 0.016 14.8 0.0 1.5 2 0 0 2 2 1 1 AAA domain MMR_HSR1 PF01926.23 gi|119872017|ref|YP_930024.1| - 0.011 15.9 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_16 PF13191.6 gi|119872017|ref|YP_930024.1| - 0.011 16.1 0.2 0.026 14.9 0.2 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|119872017|ref|YP_930024.1| - 0.014 15.0 0.0 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|119872017|ref|YP_930024.1| - 0.023 14.8 0.1 0.043 13.9 0.1 1.4 1 0 0 1 1 1 0 Dynamin family ABC_ATPase PF09818.9 gi|119872017|ref|YP_930024.1| - 0.024 13.4 0.1 2.7 6.7 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|119872017|ref|YP_930024.1| - 0.04 13.0 0.1 0.069 12.2 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AIG1 PF04548.16 gi|119872017|ref|YP_930024.1| - 0.046 13.1 0.1 0.077 12.3 0.1 1.4 1 0 0 1 1 1 0 AIG1 family NACHT PF05729.12 gi|119872017|ref|YP_930024.1| - 0.046 13.6 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_14 PF13173.6 gi|119872017|ref|YP_930024.1| - 0.05 13.6 0.1 0.59 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|119872017|ref|YP_930024.1| - 0.057 13.0 0.1 0.1 12.2 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|119872017|ref|YP_930024.1| - 0.085 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SbcCD_C PF13558.6 gi|119872017|ref|YP_930024.1| - 0.088 13.1 0.0 2.5 8.4 0.0 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TniB PF05621.11 gi|119872017|ref|YP_930024.1| - 0.093 12.1 0.1 0.65 9.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA PF00004.29 gi|119872017|ref|YP_930024.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|119872017|ref|YP_930024.1| - 0.12 12.6 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119872017|ref|YP_930024.1| - 0.19 11.5 0.2 0.47 10.2 0.1 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein DLIC PF05783.11 gi|119872017|ref|YP_930024.1| - 0.24 10.2 0.0 0.32 9.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ANF_receptor PF01094.28 gi|119872018|ref|YP_930025.1| - 1.4e-44 152.7 0.0 1.6e-44 152.5 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|119872018|ref|YP_930025.1| - 2.5e-40 139.2 0.5 2.9e-40 139.0 0.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|119872018|ref|YP_930025.1| - 3.8e-08 32.7 0.0 0.0044 16.1 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain PyrI PF01948.18 gi|119872019|ref|YP_930026.1| - 7.6e-34 115.8 2.5 9.3e-34 115.6 2.5 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|119872019|ref|YP_930026.1| - 8.4e-14 51.2 0.8 1.2e-13 50.7 0.1 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Pribosyltran PF00156.27 gi|119872020|ref|YP_930027.1| - 6.3e-17 61.5 0.1 8.6e-17 61.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119872020|ref|YP_930027.1| - 0.0072 15.8 0.0 0.0098 15.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|119872020|ref|YP_930027.1| - 0.024 14.1 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Bacteriocin_IId PF09221.10 gi|119872020|ref|YP_930027.1| - 0.064 13.4 2.4 0.13 12.4 2.4 1.4 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like DHO_dh PF01180.21 gi|119872021|ref|YP_930028.1| - 3.6e-27 95.4 0.0 8.6e-26 90.8 0.0 2.0 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|119872021|ref|YP_930028.1| - 0.0078 15.7 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|119872021|ref|YP_930028.1| - 0.099 12.0 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Nitronate monooxygenase Mut7-C PF01927.16 gi|119872022|ref|YP_930029.1| - 5.8e-18 65.4 0.3 6.7e-18 65.2 0.3 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF3268 PF11672.8 gi|119872022|ref|YP_930029.1| - 0.0052 17.1 1.6 0.012 16.0 1.8 1.5 2 0 0 2 2 2 1 zinc-finger-containing domain Lar_restr_allev PF14354.6 gi|119872022|ref|YP_930029.1| - 0.045 14.1 1.7 0.069 13.5 1.7 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|119872022|ref|YP_930029.1| - 0.11 12.6 0.8 5.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|119872022|ref|YP_930029.1| - 0.19 11.6 0.7 5.6 6.9 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO FbpA PF05833.11 gi|119872023|ref|YP_930030.1| - 2.8e-31 108.8 2.7 3.3e-31 108.6 1.8 1.4 2 0 0 2 2 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|119872023|ref|YP_930030.1| - 1.7e-20 73.7 0.0 4.4e-20 72.4 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain NuA4 PF09340.10 gi|119872023|ref|YP_930030.1| - 0.00032 20.5 6.6 0.0021 17.9 0.4 2.4 2 0 0 2 2 2 1 Histone acetyltransferase subunit NuA4 NFACT-R_2 PF18297.1 gi|119872023|ref|YP_930030.1| - 0.0029 17.8 0.0 0.008 16.4 0.0 1.7 1 0 0 1 1 1 1 NFACT protein RNA binding domain Lzipper-MIP1 PF14389.6 gi|119872023|ref|YP_930030.1| - 0.006 16.9 4.4 2.2 8.6 0.2 2.9 3 0 0 3 3 2 1 Leucine-zipper of ternary complex factor MIP1 Spc24 PF08286.11 gi|119872023|ref|YP_930030.1| - 0.0067 16.7 3.8 1.7 8.9 0.1 2.3 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 PspA_IM30 PF04012.12 gi|119872023|ref|YP_930030.1| - 0.0073 15.9 12.5 0.2 11.2 3.6 2.3 2 0 0 2 2 2 2 PspA/IM30 family TPR_MLP1_2 PF07926.12 gi|119872023|ref|YP_930030.1| - 0.035 14.2 9.0 1 9.4 0.3 2.3 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Seryl_tRNA_N PF02403.22 gi|119872023|ref|YP_930030.1| - 0.048 13.9 7.5 0.83 9.9 0.1 2.7 3 0 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain DLP_helical PF18709.1 gi|119872023|ref|YP_930030.1| - 0.054 12.7 6.7 0.031 13.5 1.3 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain AAA_13 PF13166.6 gi|119872023|ref|YP_930030.1| - 0.054 12.1 3.4 0.33 9.5 4.8 1.5 2 0 0 2 2 2 0 AAA domain TSC22 PF01166.18 gi|119872023|ref|YP_930030.1| - 0.054 13.8 6.1 0.12 12.7 0.6 2.7 2 0 0 2 2 2 0 TSC-22/dip/bun family Cnn_1N PF07989.11 gi|119872023|ref|YP_930030.1| - 0.056 13.6 5.3 2.2 8.5 1.2 2.5 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 GCN5L1 PF06320.13 gi|119872023|ref|YP_930030.1| - 0.063 13.4 4.2 1.9 8.7 0.2 2.5 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF4446 PF14584.6 gi|119872023|ref|YP_930030.1| - 0.063 13.3 2.2 0.85 9.6 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Tropomyosin_1 PF12718.7 gi|119872023|ref|YP_930030.1| - 0.068 13.3 11.3 0.058 13.6 2.9 2.2 2 0 0 2 2 2 0 Tropomyosin like APG6_N PF17675.1 gi|119872023|ref|YP_930030.1| - 0.072 13.6 11.1 0.23 12.0 1.0 2.2 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF4618 PF15397.6 gi|119872023|ref|YP_930030.1| - 0.074 12.5 6.2 0.31 10.4 0.9 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) CENP-H PF05837.12 gi|119872023|ref|YP_930030.1| - 0.088 13.2 5.8 2.7 8.4 0.5 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) DivIVA PF05103.13 gi|119872023|ref|YP_930030.1| - 0.095 12.8 7.3 0.58 10.2 1.2 2.3 2 0 0 2 2 2 0 DivIVA protein Laminin_I PF06008.14 gi|119872023|ref|YP_930030.1| - 0.11 12.2 3.7 0.9 9.2 0.3 2.2 2 0 0 2 2 2 0 Laminin Domain I GAS PF13851.6 gi|119872023|ref|YP_930030.1| - 0.12 11.7 10.7 0.66 9.3 2.2 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding KfrA_N PF11740.8 gi|119872023|ref|YP_930030.1| - 0.14 12.8 1.8 4.1 8.1 0.3 2.4 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term COG5 PF10392.9 gi|119872023|ref|YP_930030.1| - 0.16 12.2 2.3 3.2 7.9 0.1 2.3 2 0 0 2 2 2 0 Golgi transport complex subunit 5 ZapB PF06005.12 gi|119872023|ref|YP_930030.1| - 0.17 12.4 12.9 0.56 10.7 3.0 2.4 2 0 0 2 2 2 0 Cell division protein ZapB DUF1043 PF06295.12 gi|119872023|ref|YP_930030.1| - 0.19 11.7 1.7 13 5.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1043) DUF4140 PF13600.6 gi|119872023|ref|YP_930030.1| - 0.19 12.2 2.9 8.5 6.9 0.9 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) UPF0449 PF15136.6 gi|119872023|ref|YP_930030.1| - 0.21 12.1 3.0 15 6.1 0.1 2.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0449 TMF_DNA_bd PF12329.8 gi|119872023|ref|YP_930030.1| - 0.25 11.4 17.5 0.48 10.5 4.9 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding CASP_C PF08172.12 gi|119872023|ref|YP_930030.1| - 0.26 10.6 4.0 0.28 10.5 0.1 2.0 2 0 0 2 2 2 0 CASP C terminal DUF3450 PF11932.8 gi|119872023|ref|YP_930030.1| - 0.28 10.5 5.6 4.6 6.5 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) End3 PF12761.7 gi|119872023|ref|YP_930030.1| - 0.28 11.3 7.1 2 8.5 0.6 2.2 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 MIP-T3_C PF17749.1 gi|119872023|ref|YP_930030.1| - 0.29 11.1 7.6 0.65 10.0 1.0 2.3 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Taxilin PF09728.9 gi|119872023|ref|YP_930030.1| - 0.29 10.3 8.5 0.15 11.2 0.6 2.1 2 0 0 2 2 2 0 Myosin-like coiled-coil protein FlaC_arch PF05377.11 gi|119872023|ref|YP_930030.1| - 0.32 11.4 7.9 1.7 9.1 2.4 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) ApoLp-III PF07464.11 gi|119872023|ref|YP_930030.1| - 0.35 11.0 5.9 7.5 6.6 0.6 2.4 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Snf7 PF03357.21 gi|119872023|ref|YP_930030.1| - 0.37 10.4 9.7 0.2 11.2 2.0 2.3 2 0 0 2 2 2 0 Snf7 ATG16 PF08614.11 gi|119872023|ref|YP_930030.1| - 0.48 10.6 8.6 2.8 8.1 3.2 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) ERM PF00769.19 gi|119872023|ref|YP_930030.1| - 0.51 10.1 12.2 1.1 9.0 2.4 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Phage_GP20 PF06810.11 gi|119872023|ref|YP_930030.1| - 0.52 10.1 9.7 0.75 9.6 1.2 2.3 1 1 1 2 2 2 0 Phage minor structural protein GP20 DUF1664 PF07889.12 gi|119872023|ref|YP_930030.1| - 0.52 10.3 5.1 5.4 7.1 0.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) CLZ PF16526.5 gi|119872023|ref|YP_930030.1| - 0.54 10.6 7.8 0.12 12.7 1.2 2.5 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Rootletin PF15035.6 gi|119872023|ref|YP_930030.1| - 0.61 10.1 6.4 1.2 9.1 6.4 1.4 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Spectrin PF00435.21 gi|119872023|ref|YP_930030.1| - 0.66 10.5 5.4 3.5 8.1 0.2 2.7 3 0 0 3 3 2 0 Spectrin repeat Plk4_PB2 PF18409.1 gi|119872023|ref|YP_930030.1| - 0.66 10.7 2.8 1.6 9.4 0.3 2.3 1 1 1 2 2 2 0 Polo-like Kinase 4 Polo Box 2 DUF2205 PF10224.9 gi|119872023|ref|YP_930030.1| - 0.81 9.7 7.0 2.5 8.2 0.7 2.5 2 0 0 2 2 2 0 Short coiled-coil protein YabA PF06156.13 gi|119872023|ref|YP_930030.1| - 1.3 9.7 6.4 9.3 7.0 0.4 2.4 2 0 0 2 2 2 0 Initiation control protein YabA Fzo_mitofusin PF04799.13 gi|119872023|ref|YP_930030.1| - 1.4 8.5 5.3 6.4 6.3 0.6 2.3 2 0 0 2 2 2 0 fzo-like conserved region DUF724 PF05266.14 gi|119872023|ref|YP_930030.1| - 1.4 8.7 8.1 4.8 7.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF4094 PF13334.6 gi|119872023|ref|YP_930030.1| - 1.5 9.3 3.2 24 5.4 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) Uso1_p115_C PF04871.13 gi|119872023|ref|YP_930030.1| - 1.6 9.1 10.3 2 8.8 2.5 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Wtap PF17098.5 gi|119872023|ref|YP_930030.1| - 2.1 8.2 5.8 7.1 6.5 0.3 2.2 2 0 0 2 2 2 0 WTAP/Mum2p family Spc7 PF08317.11 gi|119872023|ref|YP_930030.1| - 2.3 7.0 13.6 1.1 8.1 2.8 2.0 1 1 1 2 2 2 0 Spc7 kinetochore protein MscS_porin PF12795.7 gi|119872023|ref|YP_930030.1| - 2.4 7.7 7.9 9.3 5.7 2.3 2.2 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain HIP1_clath_bdg PF16515.5 gi|119872023|ref|YP_930030.1| - 3.2 8.4 7.9 0.93 10.1 1.6 2.3 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Tektin PF03148.14 gi|119872023|ref|YP_930030.1| - 3.4 6.3 12.5 16 4.1 12.5 1.8 1 1 0 1 1 1 0 Tektin family ADIP PF11559.8 gi|119872023|ref|YP_930030.1| - 3.4 7.7 8.9 9.3 6.3 1.5 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding FadA PF09403.10 gi|119872023|ref|YP_930030.1| - 3.6 8.1 10.3 10 6.7 0.6 2.4 2 0 0 2 2 2 0 Adhesion protein FadA DivIC PF04977.15 gi|119872023|ref|YP_930030.1| - 3.6 7.4 9.4 2.1 8.2 0.6 2.6 2 0 0 2 2 2 0 Septum formation initiator TMF_TATA_bd PF12325.8 gi|119872023|ref|YP_930030.1| - 3.7 7.8 9.6 4 7.7 0.9 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding FapA PF03961.13 gi|119872023|ref|YP_930030.1| - 6.1 5.3 12.1 0.68 8.5 1.5 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF16 PF01519.16 gi|119872023|ref|YP_930030.1| - 6.8 7.2 8.9 11 6.6 4.6 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 FeoB_Cyto PF17910.1 gi|119872023|ref|YP_930030.1| - 7.6 7.2 10.3 1.7e+02 2.8 9.4 3.0 2 1 0 2 2 1 0 FeoB cytosolic helical domain AP_endonuc_2 PF01261.24 gi|119872024|ref|YP_930031.1| - 4.8e-25 88.3 0.1 1.2e-24 87.0 0.0 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|119872024|ref|YP_930031.1| - 0.022 14.0 0.0 0.038 13.2 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE TruD PF01142.18 gi|119872025|ref|YP_930032.1| - 1.5e-106 356.8 0.0 6.7e-106 354.6 0.0 1.8 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF362 PF04015.12 gi|119872026|ref|YP_930033.1| - 0.0017 18.6 0.0 0.003 17.8 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF362) Ribosomal_L14 PF00238.19 gi|119872027|ref|YP_930034.1| - 2.9e-34 117.8 0.1 3.7e-34 117.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Vps54_N PF10475.9 gi|119872028|ref|YP_930035.1| - 0.091 12.0 0.0 0.14 11.5 0.0 1.3 1 1 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex Peptidase_U32 PF01136.19 gi|119872029|ref|YP_930036.1| - 0.029 13.5 0.1 0.03 13.5 0.1 1.1 1 0 0 1 1 1 0 Peptidase family U32 AdoHcyase PF05221.17 gi|119872030|ref|YP_930037.1| - 1.4e-68 231.2 0.0 2.1e-68 230.7 0.0 1.2 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|119872030|ref|YP_930037.1| - 1.9e-50 171.1 0.6 5.3e-50 169.6 0.2 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|119872030|ref|YP_930037.1| - 2.4e-07 30.3 0.1 5.6e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|119872030|ref|YP_930037.1| - 8.2e-05 22.2 0.2 0.0002 20.9 0.2 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|119872030|ref|YP_930037.1| - 0.00049 20.4 0.2 0.0087 16.3 0.1 2.5 2 1 0 2 2 2 1 TrkA-N domain ATPase PF06745.13 gi|119872031|ref|YP_930038.1| - 1.3e-87 293.0 0.0 1.7e-87 292.6 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119872031|ref|YP_930038.1| - 2.9e-06 27.0 0.0 6.4e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|119872031|ref|YP_930038.1| - 0.00033 19.4 0.0 0.00041 19.1 0.0 1.1 1 0 0 1 1 1 1 GvpD gas vesicle protein DUF2075 PF09848.9 gi|119872031|ref|YP_930038.1| - 0.0098 15.2 0.3 0.026 13.8 0.2 1.7 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) MEDS PF14417.6 gi|119872031|ref|YP_930038.1| - 0.075 12.9 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_16 PF13191.6 gi|119872031|ref|YP_930038.1| - 0.082 13.3 0.1 0.14 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain HTH_23 PF13384.6 gi|119872032|ref|YP_930039.1| - 8.2e-06 25.5 0.1 2.1e-05 24.2 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Val_tRNA-synt_C PF10458.9 gi|119872032|ref|YP_930039.1| - 4.4e-05 23.7 2.6 8.5e-05 22.8 2.6 1.5 1 0 0 1 1 1 1 Valyl tRNA synthetase tRNA binding arm HTH_11 PF08279.12 gi|119872032|ref|YP_930039.1| - 7.3e-05 22.6 0.6 0.00033 20.6 0.0 2.3 3 0 0 3 3 3 1 HTH domain HTH_24 PF13412.6 gi|119872032|ref|YP_930039.1| - 0.00035 20.1 0.0 0.0015 18.1 0.0 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|119872032|ref|YP_930039.1| - 0.00085 19.0 0.1 0.0025 17.4 0.0 1.8 2 0 0 2 2 1 1 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|119872032|ref|YP_930039.1| - 0.00095 18.9 0.1 0.0018 18.0 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_29 PF13551.6 gi|119872032|ref|YP_930039.1| - 0.00096 19.1 0.1 0.0029 17.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn helix HTH_20 PF12840.7 gi|119872032|ref|YP_930039.1| - 0.0015 18.5 0.4 0.013 15.5 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|119872032|ref|YP_930039.1| - 0.0016 18.5 0.0 0.0037 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_5 PF01022.20 gi|119872032|ref|YP_930039.1| - 0.0021 17.9 0.1 0.0067 16.3 0.0 2.0 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|119872032|ref|YP_930039.1| - 0.0027 17.5 0.2 0.0068 16.2 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|119872032|ref|YP_930039.1| - 0.0032 17.2 0.2 0.0066 16.2 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|119872032|ref|YP_930039.1| - 0.0045 17.4 1.8 0.0085 16.5 0.9 1.9 2 1 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|119872032|ref|YP_930039.1| - 0.0047 16.4 0.4 0.032 13.7 0.1 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 Rx_N PF18052.1 gi|119872032|ref|YP_930039.1| - 0.007 16.6 0.5 0.31 11.3 0.2 2.3 2 0 0 2 2 2 1 Rx N-terminal domain HTH_31 PF13560.6 gi|119872032|ref|YP_930039.1| - 0.011 16.1 0.3 0.026 14.9 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.19 gi|119872032|ref|YP_930039.1| - 0.012 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|119872032|ref|YP_930039.1| - 0.019 14.7 0.6 0.057 13.2 0.2 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|119872032|ref|YP_930039.1| - 0.021 15.0 0.5 0.12 12.6 0.0 2.4 2 1 1 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain Acetyltransf_CG PF14542.6 gi|119872032|ref|YP_930039.1| - 0.029 14.5 0.0 0.044 13.9 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_Tnp_ISL3 PF13542.6 gi|119872032|ref|YP_930039.1| - 0.029 13.8 0.2 0.051 13.0 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TFIIF_alpha PF05793.12 gi|119872032|ref|YP_930039.1| - 0.034 12.7 0.4 0.035 12.7 0.4 1.0 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) HTH_28 PF13518.6 gi|119872032|ref|YP_930039.1| - 0.035 14.3 0.1 0.067 13.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|119872032|ref|YP_930039.1| - 0.035 13.9 0.1 0.1 12.4 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain Put_DNA-bind_N PF06971.13 gi|119872032|ref|YP_930039.1| - 0.052 13.6 0.0 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_22 PF13309.6 gi|119872032|ref|YP_930039.1| - 0.061 13.4 0.0 0.25 11.5 0.0 2.0 2 0 0 2 2 1 0 HTH domain Mga PF05043.13 gi|119872032|ref|YP_930039.1| - 0.063 13.9 0.0 12 6.6 0.0 2.3 2 0 0 2 2 2 0 Mga helix-turn-helix domain Med9 PF07544.13 gi|119872032|ref|YP_930039.1| - 0.064 13.4 0.2 0.13 12.4 0.2 1.5 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 HTH_3 PF01381.22 gi|119872032|ref|YP_930039.1| - 0.069 13.2 0.4 0.18 11.9 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix HTH_Tnp_1 PF01527.20 gi|119872032|ref|YP_930039.1| - 0.085 13.2 1.2 0.25 11.7 1.2 1.9 1 1 0 1 1 1 0 Transposase MarR_2 PF12802.7 gi|119872032|ref|YP_930039.1| - 0.091 12.7 0.1 0.23 11.4 0.1 1.8 1 0 0 1 1 1 0 MarR family YdaS_antitoxin PF15943.5 gi|119872032|ref|YP_930039.1| - 0.092 12.6 0.0 0.29 11.0 0.0 1.8 2 0 0 2 2 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT FaeA PF04703.12 gi|119872032|ref|YP_930039.1| - 0.11 12.9 0.1 0.2 12.0 0.1 1.4 1 0 0 1 1 1 0 FaeA-like protein CdvA PF18822.1 gi|119872032|ref|YP_930039.1| - 0.45 10.3 4.4 0.31 10.9 1.8 2.0 2 1 0 2 2 2 0 CdvA-like coiled-coil domain B3_4 PF03483.17 gi|119872033|ref|YP_930040.1| - 3.2e-26 92.0 0.0 4.3e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain AAA_26 PF13500.6 gi|119872034|ref|YP_930041.1| - 0.00011 22.0 1.3 0.0015 18.4 0.1 2.6 2 1 1 3 3 3 1 AAA domain cobW PF02492.19 gi|119872034|ref|YP_930041.1| - 0.00014 21.5 0.0 0.035 13.7 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|119872034|ref|YP_930041.1| - 0.00024 21.1 0.6 0.0011 19.0 0.6 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119872034|ref|YP_930041.1| - 0.00032 20.3 2.4 0.0016 17.9 0.3 2.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MobB PF03205.14 gi|119872034|ref|YP_930041.1| - 0.00054 19.9 0.1 0.0036 17.2 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.17 gi|119872034|ref|YP_930041.1| - 0.0049 16.6 0.0 0.0085 15.8 0.0 1.3 1 0 0 1 1 1 1 Thymidylate kinase Zeta_toxin PF06414.12 gi|119872034|ref|YP_930041.1| - 0.0095 15.2 0.0 0.019 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin MeaB PF03308.16 gi|119872034|ref|YP_930041.1| - 0.0098 14.9 1.1 0.023 13.7 0.2 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|119872034|ref|YP_930041.1| - 0.022 14.0 0.0 0.046 13.0 0.0 1.6 1 0 0 1 1 1 0 ATPase MipZ ABC_tran PF00005.27 gi|119872034|ref|YP_930041.1| - 0.12 12.9 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_31 PF13614.6 gi|119872034|ref|YP_930041.1| - 0.15 12.0 0.3 0.58 10.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.7 gi|119872035|ref|YP_930042.1| - 1.2e-07 32.1 0.0 2.3e-06 27.9 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119872035|ref|YP_930042.1| - 0.015 15.8 0.1 0.18 12.3 0.1 2.2 1 1 0 1 1 1 0 Calcineurin-like phosphoesterase Thioredoxin_2 PF13098.6 gi|119872037|ref|YP_930044.1| - 1.2e-10 41.8 0.0 1.9e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|119872037|ref|YP_930044.1| - 4.9e-07 30.1 0.0 3.6e-06 27.2 0.1 1.9 2 0 0 2 2 2 1 Thioredoxin DSBA PF01323.20 gi|119872037|ref|YP_930044.1| - 0.0007 19.4 0.0 0.28 10.9 0.0 2.3 2 0 0 2 2 2 2 DSBA-like thioredoxin domain TraF PF13728.6 gi|119872037|ref|YP_930044.1| - 0.024 14.4 0.0 2 8.2 0.0 2.1 2 0 0 2 2 2 0 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|119872038|ref|YP_930045.1| - 0.0025 17.8 0.0 0.0062 16.6 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin domain Ribonuc_red_lgC PF02867.15 gi|119872039|ref|YP_930046.1| - 2.9e-148 494.7 0.0 3.5e-148 494.4 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|119872039|ref|YP_930046.1| - 1.8e-12 47.1 0.0 3.4e-12 46.2 0.0 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|119872039|ref|YP_930046.1| - 0.054 14.1 0.0 0.16 12.5 0.0 1.9 1 0 0 1 1 1 0 ATP cone domain Phtf-FEM1B_bdg PF12129.8 gi|119872040|ref|YP_930047.1| - 0.11 12.3 4.8 0.16 11.8 4.8 1.4 1 1 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor DUF4199 PF13858.6 gi|119872040|ref|YP_930047.1| - 0.39 11.1 8.9 1.6 9.1 8.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) tRNA-synt_2b PF00587.25 gi|119872042|ref|YP_930049.1| - 1.8e-32 112.7 0.0 3e-32 112.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|119872042|ref|YP_930049.1| - 1.3e-21 76.8 5.2 2.2e-21 76.1 5.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain GAS PF13851.6 gi|119872042|ref|YP_930049.1| - 0.0023 17.3 5.0 0.004 16.5 5.0 1.3 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding FapA PF03961.13 gi|119872042|ref|YP_930049.1| - 0.0075 14.9 0.6 0.012 14.2 0.6 1.2 1 0 0 1 1 1 1 Flagellar Assembly Protein A ALIX_LYPXL_bnd PF13949.6 gi|119872042|ref|YP_930049.1| - 0.0085 15.4 1.7 0.014 14.7 1.7 1.2 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV V-SNARE PF05008.15 gi|119872042|ref|YP_930049.1| - 0.0095 16.3 3.4 0.018 15.4 3.4 1.4 1 0 0 1 1 1 1 Vesicle transport v-SNARE protein N-terminus APG6_N PF17675.1 gi|119872042|ref|YP_930049.1| - 0.014 15.9 5.7 0.025 15.1 5.7 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region OmpH PF03938.14 gi|119872042|ref|YP_930049.1| - 0.017 15.5 0.4 0.035 14.4 0.4 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) KASH_CCD PF14662.6 gi|119872042|ref|YP_930049.1| - 0.026 14.4 4.3 0.04 13.7 4.3 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH SKA2 PF16740.5 gi|119872042|ref|YP_930049.1| - 0.051 13.4 0.9 0.097 12.5 0.9 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 2 TMF_TATA_bd PF12325.8 gi|119872042|ref|YP_930049.1| - 0.063 13.5 3.1 0.12 12.6 3.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Syntaxin PF00804.25 gi|119872042|ref|YP_930049.1| - 0.071 12.8 2.8 0.12 12.0 2.8 1.3 1 0 0 1 1 1 0 Syntaxin Syntaxin-6_N PF09177.11 gi|119872042|ref|YP_930049.1| - 0.087 13.4 2.6 0.16 12.6 1.5 2.1 2 0 0 2 2 1 0 Syntaxin 6, N-terminal PCRF PF03462.18 gi|119872042|ref|YP_930049.1| - 0.091 12.6 1.6 0.44 10.4 1.2 2.0 2 0 0 2 2 2 0 PCRF domain GARP PF16731.5 gi|119872042|ref|YP_930049.1| - 0.1 12.3 3.7 0.12 12.0 2.3 1.8 1 1 1 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma STAT_alpha PF01017.20 gi|119872042|ref|YP_930049.1| - 0.12 12.3 0.3 0.2 11.5 0.3 1.3 1 0 0 1 1 1 0 STAT protein, all-alpha domain OAF PF14941.6 gi|119872042|ref|YP_930049.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, Out at first Dynamitin PF04912.14 gi|119872042|ref|YP_930049.1| - 0.21 10.9 3.6 0.31 10.3 3.6 1.1 1 0 0 1 1 1 0 Dynamitin COG6 PF06419.11 gi|119872042|ref|YP_930049.1| - 0.24 9.6 1.0 0.34 9.1 1.0 1.1 1 0 0 1 1 1 0 Conserved oligomeric complex COG6 DASH_Dam1 PF08653.10 gi|119872042|ref|YP_930049.1| - 0.26 11.1 0.5 12 5.8 0.1 2.6 2 0 0 2 2 2 0 DASH complex subunit Dam1 DUF349 PF03993.12 gi|119872042|ref|YP_930049.1| - 0.28 11.5 5.2 0.73 10.2 5.2 1.7 1 1 0 1 1 1 0 Domain of Unknown Function (DUF349) Cep57_MT_bd PF06657.13 gi|119872042|ref|YP_930049.1| - 0.36 11.3 4.1 0.75 10.3 4.1 1.5 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 Cnn_1N PF07989.11 gi|119872042|ref|YP_930049.1| - 0.65 10.2 6.9 1.5 9.0 6.9 1.6 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 bZIP_1 PF00170.21 gi|119872042|ref|YP_930049.1| - 0.92 9.7 7.7 3.9 7.6 0.3 2.4 2 0 0 2 2 2 0 bZIP transcription factor Helo_like_N PF17111.5 gi|119872042|ref|YP_930049.1| - 1 8.7 2.7 1.4 8.2 0.2 2.0 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins Nmad5 PF18757.1 gi|119872042|ref|YP_930049.1| - 1 9.5 4.6 14 5.8 0.8 2.3 1 1 1 2 2 2 0 Nucleotide modification associated domain 5 DMPK_coil PF08826.10 gi|119872042|ref|YP_930049.1| - 1.4 9.1 6.3 14 5.9 2.0 2.4 2 0 0 2 2 2 0 DMPK coiled coil domain like ZapB PF06005.12 gi|119872042|ref|YP_930049.1| - 3.2 8.3 10.1 2.4e+02 2.2 10.1 2.4 1 1 0 1 1 1 0 Cell division protein ZapB Takusan PF04822.13 gi|119872042|ref|YP_930049.1| - 3.7 7.5 8.5 3.7 7.5 3.8 2.5 1 1 1 2 2 2 0 Takusan AAA_23 PF13476.6 gi|119872042|ref|YP_930049.1| - 5.6 7.4 5.5 9.1 6.7 5.5 1.2 1 0 0 1 1 1 0 AAA domain AA_kinase PF00696.28 gi|119872044|ref|YP_930051.1| - 4.2e-24 85.5 0.0 8e-23 81.3 0.0 2.0 1 1 0 1 1 1 1 Amino acid kinase family TetR_C_5 PF08360.11 gi|119872044|ref|YP_930051.1| - 0.14 12.3 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 QacR-like protein, C-terminal region HIT PF01230.23 gi|119872045|ref|YP_930052.1| - 9.7e-23 80.8 0.0 1.8e-22 79.9 0.0 1.3 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|119872045|ref|YP_930052.1| - 1.2e-14 54.7 0.0 2e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Sigma70_r4_2 PF08281.12 gi|119872046|ref|YP_930053.1| - 5.5e-07 29.2 0.3 5.5e-07 29.2 0.3 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|119872046|ref|YP_930053.1| - 1.6e-06 27.8 0.1 3.1e-06 26.8 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GerE PF00196.19 gi|119872046|ref|YP_930053.1| - 4.3e-06 26.2 0.3 9.1e-06 25.1 0.3 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_10 PF04967.12 gi|119872046|ref|YP_930053.1| - 0.0003 20.5 0.1 0.00061 19.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Terminase_5 PF06056.12 gi|119872046|ref|YP_930053.1| - 0.00032 20.5 0.0 0.00051 19.9 0.0 1.3 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_38 PF13936.6 gi|119872046|ref|YP_930053.1| - 0.00052 19.7 0.1 0.00088 19.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TnsD PF15978.5 gi|119872046|ref|YP_930053.1| - 0.00068 18.7 0.1 0.0012 18.0 0.0 1.4 2 0 0 2 2 2 1 Tn7-like transposition protein D Sigma70_ECF PF07638.11 gi|119872046|ref|YP_930053.1| - 0.0015 18.5 0.3 0.0038 17.2 0.1 1.6 2 0 0 2 2 2 1 ECF sigma factor HTH_28 PF13518.6 gi|119872046|ref|YP_930053.1| - 0.0015 18.6 0.1 0.004 17.2 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|119872046|ref|YP_930053.1| - 0.0042 17.0 0.1 0.015 15.2 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_7 PF02796.15 gi|119872046|ref|YP_930053.1| - 0.0058 16.7 0.5 0.011 15.8 0.2 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_29 PF13551.6 gi|119872046|ref|YP_930053.1| - 0.0068 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.6 gi|119872046|ref|YP_930053.1| - 0.0077 16.7 0.0 0.013 15.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|119872046|ref|YP_930053.1| - 0.01 15.7 0.1 0.019 14.8 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119872046|ref|YP_930053.1| - 0.012 15.1 2.2 0.013 15.0 0.1 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_22 PF13309.6 gi|119872046|ref|YP_930053.1| - 0.013 15.6 0.1 0.054 13.6 0.0 2.1 3 0 0 3 3 2 0 HTH domain Sigma70_r3 PF04539.16 gi|119872046|ref|YP_930053.1| - 0.016 15.3 0.1 0.04 14.0 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_17 PF12728.7 gi|119872046|ref|YP_930053.1| - 0.025 14.7 0.0 0.043 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.19 gi|119872046|ref|YP_930053.1| - 0.043 13.6 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_30 PF13556.6 gi|119872046|ref|YP_930053.1| - 0.045 13.5 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|119872046|ref|YP_930053.1| - 0.052 13.1 0.1 0.093 12.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|119872046|ref|YP_930053.1| - 0.069 13.4 0.0 0.18 12.0 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_36 PF13730.6 gi|119872046|ref|YP_930053.1| - 0.072 13.0 0.1 0.16 11.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Pex14_N PF04695.13 gi|119872046|ref|YP_930053.1| - 0.11 13.1 0.0 0.99 10.1 0.0 2.0 2 0 0 2 2 2 0 Peroxisomal membrane anchor protein (Pex14p) conserved region GntR PF00392.21 gi|119872046|ref|YP_930053.1| - 0.12 12.1 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_Tnp_IS1 PF12759.7 gi|119872046|ref|YP_930053.1| - 0.12 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 InsA C-terminal domain PAX PF00292.18 gi|119872046|ref|YP_930053.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 'Paired box' domain MMR_HSR1_C PF08438.10 gi|119872047|ref|YP_930054.1| - 2.8e-33 114.8 0.0 4.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|119872047|ref|YP_930054.1| - 1.3e-19 70.3 0.0 3.5e-19 68.9 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|119872047|ref|YP_930054.1| - 2.6e-06 27.4 0.0 5.5e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|119872047|ref|YP_930054.1| - 0.00035 20.1 0.0 0.0058 16.2 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|119872047|ref|YP_930054.1| - 0.016 14.7 0.0 2.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain CBS PF00571.28 gi|119872049|ref|YP_930056.1| - 1.7e-60 201.3 24.8 1.6e-10 41.2 0.0 8.3 8 0 0 8 8 8 8 CBS domain sCache_3_2 PF17203.4 gi|119872049|ref|YP_930056.1| - 0.17 12.0 0.6 22 5.2 0.2 3.4 4 0 0 4 4 4 0 Single cache domain 3 AAA PF00004.29 gi|119872050|ref|YP_930057.1| - 4.1e-100 331.4 0.0 1e-50 171.5 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|119872050|ref|YP_930057.1| - 1.5e-36 123.9 0.6 1.1e-18 66.7 0.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|119872050|ref|YP_930057.1| - 4.6e-34 116.5 0.7 6.7e-33 112.7 1.1 2.8 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|119872050|ref|YP_930057.1| - 2.3e-15 56.7 0.0 2.2e-07 30.7 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|119872050|ref|YP_930057.1| - 4.9e-14 52.8 0.0 1.5e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|119872050|ref|YP_930057.1| - 2.6e-12 47.4 0.0 1.2e-05 25.8 0.0 3.7 2 2 0 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|119872050|ref|YP_930057.1| - 3e-12 46.1 0.4 8.1e-12 44.8 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|119872050|ref|YP_930057.1| - 6.1e-12 46.0 0.1 0.00045 20.5 0.0 4.2 2 2 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|119872050|ref|YP_930057.1| - 2.6e-11 43.7 0.4 3.4e-05 23.9 0.1 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|119872050|ref|YP_930057.1| - 4e-11 43.3 0.0 5.9e-05 23.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|119872050|ref|YP_930057.1| - 3.1e-10 40.2 0.0 7.3e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|119872050|ref|YP_930057.1| - 8.3e-10 38.5 0.9 0.00028 20.8 0.1 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain TIP49 PF06068.13 gi|119872050|ref|YP_930057.1| - 3.6e-09 36.3 0.1 0.00029 20.2 0.0 2.4 2 0 0 2 2 2 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|119872050|ref|YP_930057.1| - 1.6e-08 34.4 0.0 0.0032 17.2 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|119872050|ref|YP_930057.1| - 3.8e-08 33.9 0.0 0.0059 17.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|119872050|ref|YP_930057.1| - 1.4e-06 28.7 0.0 0.0018 18.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|119872050|ref|YP_930057.1| - 2.4e-06 27.1 0.2 0.027 13.9 0.1 2.6 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|119872050|ref|YP_930057.1| - 4.9e-06 26.4 0.0 0.097 12.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|119872050|ref|YP_930057.1| - 6.7e-06 25.9 0.1 0.093 12.4 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|119872050|ref|YP_930057.1| - 7.9e-06 25.9 0.1 0.4 10.7 0.0 3.1 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|119872050|ref|YP_930057.1| - 9.7e-06 25.9 0.0 0.25 11.8 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|119872050|ref|YP_930057.1| - 4.9e-05 22.9 0.0 0.12 11.8 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|119872050|ref|YP_930057.1| - 0.00013 21.3 0.0 0.22 10.7 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.11 gi|119872050|ref|YP_930057.1| - 0.00017 21.4 0.1 0.99 9.3 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) ATPase PF06745.13 gi|119872050|ref|YP_930057.1| - 0.00026 20.4 2.2 0.48 9.7 0.1 3.6 3 1 0 4 4 3 2 KaiC ABC_tran PF00005.27 gi|119872050|ref|YP_930057.1| - 0.00027 21.5 0.0 0.41 11.2 0.0 2.7 2 0 0 2 2 2 1 ABC transporter DUF815 PF05673.13 gi|119872050|ref|YP_930057.1| - 0.00035 19.8 0.0 0.4 9.8 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|119872050|ref|YP_930057.1| - 0.00048 20.1 0.5 1.1 9.1 0.0 3.2 3 0 0 3 3 3 1 NACHT domain AAA_17 PF13207.6 gi|119872050|ref|YP_930057.1| - 0.0006 20.3 0.1 4.7 7.7 0.0 3.4 3 0 0 3 3 3 0 AAA domain PhoH PF02562.16 gi|119872050|ref|YP_930057.1| - 0.00094 18.7 2.4 0.2 11.1 0.0 3.3 4 0 0 4 4 3 1 PhoH-like protein AAA_25 PF13481.6 gi|119872050|ref|YP_930057.1| - 0.0021 17.6 6.4 4.1 6.9 0.2 3.9 2 2 1 4 4 4 0 AAA domain Sigma54_activ_2 PF14532.6 gi|119872050|ref|YP_930057.1| - 0.0023 18.0 0.0 2 8.5 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain MazE_antitoxin PF04014.18 gi|119872050|ref|YP_930057.1| - 0.0026 17.7 0.5 0.0026 17.7 0.5 3.3 4 0 0 4 4 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Guanylate_kin PF00625.21 gi|119872050|ref|YP_930057.1| - 0.0049 16.6 0.4 17 5.1 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase AAA_19 PF13245.6 gi|119872050|ref|YP_930057.1| - 0.0059 16.9 1.7 1.2 9.5 0.2 3.1 2 1 1 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|119872050|ref|YP_930057.1| - 0.0063 16.5 0.7 2 8.3 0.1 3.2 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|119872050|ref|YP_930057.1| - 0.0088 15.8 0.1 0.85 9.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|119872050|ref|YP_930057.1| - 0.0093 15.9 1.6 7.8 6.4 0.0 3.7 3 1 1 4 4 3 0 NTPase NB-ARC PF00931.22 gi|119872050|ref|YP_930057.1| - 0.011 15.0 0.0 3.4 6.8 0.0 3.1 3 0 0 3 3 3 0 NB-ARC domain Bac_DnaA PF00308.18 gi|119872050|ref|YP_930057.1| - 0.015 15.1 0.0 2.7 7.8 0.0 3.5 4 1 0 4 4 4 0 Bacterial dnaA protein HEPN_SAV_6107 PF18726.1 gi|119872050|ref|YP_930057.1| - 0.016 15.7 0.7 0.44 11.1 0.1 2.6 2 0 0 2 2 2 0 SAV_6107-like HEPN Viral_helicase1 PF01443.18 gi|119872050|ref|YP_930057.1| - 0.016 14.9 0.0 0.63 9.7 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|119872050|ref|YP_930057.1| - 0.021 14.8 0.0 7.3 6.5 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|119872050|ref|YP_930057.1| - 0.027 14.2 0.0 8.1 6.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|119872050|ref|YP_930057.1| - 0.028 14.1 0.0 9.7 5.8 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|119872050|ref|YP_930057.1| - 0.034 13.9 0.0 0.89 9.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.6 gi|119872050|ref|YP_930057.1| - 0.041 13.7 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain ANAPC_CDC26 PF10471.9 gi|119872050|ref|YP_930057.1| - 0.054 14.3 0.2 11 7.0 0.0 2.4 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit CDC26 Parvo_NS1 PF01057.17 gi|119872050|ref|YP_930057.1| - 0.067 12.3 0.1 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AFG1_ATPase PF03969.16 gi|119872050|ref|YP_930057.1| - 0.083 11.8 0.0 12 4.6 0.0 2.6 2 0 0 2 2 2 0 AFG1-like ATPase DUF2075 PF09848.9 gi|119872050|ref|YP_930057.1| - 0.11 11.7 0.1 0.67 9.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SKI PF01202.22 gi|119872050|ref|YP_930057.1| - 0.17 12.0 0.0 22 5.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Roc PF08477.13 gi|119872050|ref|YP_930057.1| - 0.17 12.1 0.0 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase IPT PF01745.16 gi|119872050|ref|YP_930057.1| - 0.19 11.1 0.3 4.9 6.5 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase ArsA_HSP20 PF17886.1 gi|119872051|ref|YP_930058.1| - 8.4e-15 54.1 0.1 1.3e-14 53.4 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|119872051|ref|YP_930058.1| - 7.5e-13 48.5 3.9 3.2e-11 43.3 3.9 2.2 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|119872051|ref|YP_930058.1| - 0.00011 23.2 0.4 0.00017 22.5 0.4 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|119872051|ref|YP_930058.1| - 0.00068 19.8 0.0 0.0008 19.5 0.0 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|119872051|ref|YP_930058.1| - 0.012 16.0 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 PIH1 CS-like domain PepSY_like PF11396.8 gi|119872051|ref|YP_930058.1| - 0.046 14.3 2.3 1.7 9.2 0.1 2.4 2 0 0 2 2 2 0 Putative beta-lactamase-inhibitor-like, PepSY-like HECT_2 PF09814.9 gi|119872051|ref|YP_930058.1| - 0.22 10.4 0.0 0.28 10.0 0.0 1.1 1 0 0 1 1 1 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding DUF2258 PF10015.9 gi|119872052|ref|YP_930059.1| - 4.9e-23 81.0 0.3 9.1e-23 80.2 0.3 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) SPOUT_MTase_2 PF14419.6 gi|119872053|ref|YP_930060.1| - 1.7e-66 222.9 0.8 1.7e-66 222.9 0.8 1.9 2 0 0 2 2 2 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|119872053|ref|YP_930060.1| - 6.4e-23 81.5 1.4 1.6e-22 80.2 1.2 1.8 1 1 0 1 1 1 1 THUMP domain DUF2148 PF09918.9 gi|119872053|ref|YP_930060.1| - 0.08 13.0 1.1 0.59 10.2 0.1 2.7 3 0 0 3 3 3 0 Uncharacterized protein containing a ferredoxin domain (DUF2148) Ribosomal_S11 PF00411.19 gi|119872054|ref|YP_930061.1| - 3.5e-44 149.7 1.0 4.8e-44 149.3 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Pilus_CpaD PF09476.10 gi|119872054|ref|YP_930061.1| - 0.052 13.3 0.1 0.065 13.0 0.1 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Radical_SAM PF04055.21 gi|119872056|ref|YP_930063.1| - 1.5e-17 64.5 0.3 2.7e-16 60.4 0.0 2.4 3 0 0 3 3 3 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|119872056|ref|YP_930063.1| - 0.0012 18.4 2.5 0.017 14.7 2.7 2.5 1 1 0 1 1 1 1 TFIIB zinc-binding Fer4_12 PF13353.6 gi|119872056|ref|YP_930063.1| - 0.0015 18.8 0.0 0.0033 17.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.7 gi|119872056|ref|YP_930063.1| - 0.06 13.4 0.0 0.06 13.4 0.0 2.8 3 0 0 3 3 3 0 Double zinc ribbon AEP1 PF17049.5 gi|119872056|ref|YP_930063.1| - 0.098 11.7 0.0 0.13 11.3 0.0 1.1 1 0 0 1 1 1 0 ATPase expression protein 1 Zn-ribbon_8 PF09723.10 gi|119872056|ref|YP_930063.1| - 0.22 11.7 7.0 5.9 7.1 0.0 3.5 4 0 0 4 4 4 0 Zinc ribbon domain PyrI_C PF02748.15 gi|119872056|ref|YP_930063.1| - 0.49 10.3 2.5 2.8 7.9 0.0 2.6 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ribosomal_L37ae PF01780.19 gi|119872056|ref|YP_930063.1| - 0.5 10.5 4.4 4.2 7.5 0.0 2.9 2 1 1 3 3 3 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.6 gi|119872056|ref|YP_930063.1| - 1 8.9 7.5 0.78 9.2 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain Elf1 PF05129.13 gi|119872056|ref|YP_930063.1| - 7 6.8 6.6 22 5.2 0.1 3.0 3 0 0 3 3 3 0 Transcription elongation factor Elf1 like zf-RING_7 PF02591.15 gi|119872056|ref|YP_930063.1| - 9.6 6.5 7.5 2.4 8.4 0.3 2.9 3 0 0 3 3 3 0 C4-type zinc ribbon domain PhoU_div PF01865.16 gi|119872057|ref|YP_930064.1| - 3e-16 59.4 7.6 3.8e-16 59.1 7.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|119872057|ref|YP_930064.1| - 0.011 16.2 4.1 0.011 16.2 4.1 2.5 2 1 0 2 2 2 0 PhoU domain Zea_mays_MuDR PF05928.11 gi|119872057|ref|YP_930064.1| - 0.036 13.7 0.0 0.049 13.3 0.0 1.4 1 0 0 1 1 1 0 Zea mays MURB-like protein (MuDR) GlutR_dimer PF00745.20 gi|119872057|ref|YP_930064.1| - 0.14 12.6 1.0 8.4 6.9 0.3 2.6 2 1 0 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain HisKA PF00512.25 gi|119872057|ref|YP_930064.1| - 7.1 6.8 7.0 49 4.1 0.1 3.3 1 1 2 3 3 3 0 His Kinase A (phospho-acceptor) domain GNVR PF13807.6 gi|119872058|ref|YP_930065.1| - 0.39 10.7 2.7 2.9 7.9 0.1 3.3 2 1 1 3 3 3 0 G-rich domain on putative tyrosine kinase Lactamase_B_3 PF13483.6 gi|119872059|ref|YP_930066.1| - 1.3e-30 106.5 0.3 1.6e-30 106.2 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119872059|ref|YP_930066.1| - 2.9e-16 59.6 0.0 3.9e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119872059|ref|YP_930066.1| - 0.0003 20.8 0.7 0.005 16.9 0.3 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF5068 PF16781.5 gi|119872059|ref|YP_930066.1| - 0.067 12.9 0.1 0.12 12.1 0.2 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5068) MMR_HSR1 PF01926.23 gi|119872061|ref|YP_930068.1| - 3.3e-06 27.2 0.0 3.9e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|119872061|ref|YP_930068.1| - 0.015 14.7 0.0 0.018 14.5 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit NB-ARC PF00931.22 gi|119872061|ref|YP_930068.1| - 0.022 13.9 0.1 0.031 13.5 0.1 1.1 1 0 0 1 1 1 0 NB-ARC domain Ras PF00071.22 gi|119872061|ref|YP_930068.1| - 0.029 14.0 0.5 0.12 12.0 0.5 1.8 1 1 0 1 1 1 0 Ras family AAA_24 PF13479.6 gi|119872061|ref|YP_930068.1| - 0.12 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ApbA PF02558.16 gi|119872061|ref|YP_930068.1| - 0.14 11.8 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NACHT PF05729.12 gi|119872061|ref|YP_930068.1| - 0.18 11.7 0.0 0.23 11.3 0.0 1.2 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|119872062|ref|YP_930069.1| - 2.4e-42 144.7 0.1 2.7e-42 144.5 0.1 1.0 1 0 0 1 1 1 1 NTPase NB-ARC PF00931.22 gi|119872062|ref|YP_930069.1| - 8.3e-05 21.9 0.2 0.00014 21.2 0.1 1.4 1 1 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|119872062|ref|YP_930069.1| - 0.002 18.5 0.1 0.0034 17.8 0.1 1.3 1 0 0 1 1 1 1 AAA ATPase domain Viral_helicase1 PF01443.18 gi|119872062|ref|YP_930069.1| - 0.0042 16.9 0.1 0.27 10.9 0.1 2.1 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 gi|119872062|ref|YP_930069.1| - 0.0045 16.0 0.1 0.008 15.2 0.1 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|119872062|ref|YP_930069.1| - 0.0048 17.3 0.1 0.014 15.9 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|119872062|ref|YP_930069.1| - 0.011 15.5 0.1 0.072 12.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119872062|ref|YP_930069.1| - 0.013 15.8 0.1 0.057 13.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119872062|ref|YP_930069.1| - 0.013 15.1 0.1 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|119872062|ref|YP_930069.1| - 0.033 14.8 0.1 0.062 13.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119872062|ref|YP_930069.1| - 0.034 14.3 0.2 0.063 13.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|119872062|ref|YP_930069.1| - 0.036 13.8 0.3 0.058 13.2 0.3 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|119872062|ref|YP_930069.1| - 0.05 13.3 0.3 0.058 13.1 0.2 1.3 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119872062|ref|YP_930069.1| - 0.054 13.6 0.7 0.12 12.4 0.1 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase MobB PF03205.14 gi|119872062|ref|YP_930069.1| - 0.056 13.3 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.6 gi|119872062|ref|YP_930069.1| - 0.079 13.4 0.1 0.14 12.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119872062|ref|YP_930069.1| - 0.2 11.6 0.2 0.32 10.9 0.2 1.3 1 0 0 1 1 1 0 NACHT domain polyprenyl_synt PF00348.17 gi|119872063|ref|YP_930070.1| - 2.6e-34 118.4 0.0 3.7e-34 117.9 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase PHA_gran_rgn PF09650.10 gi|119872063|ref|YP_930070.1| - 0.087 13.1 0.0 0.17 12.2 0.0 1.4 1 0 0 1 1 1 0 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) zf-CCCH_6 PF18585.1 gi|119872063|ref|YP_930070.1| - 0.14 12.0 0.3 0.38 10.7 0.0 1.8 2 0 0 2 2 2 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 2 AbiEi_4 PF13338.6 gi|119872064|ref|YP_930071.1| - 2.4e-05 24.4 0.1 2.8e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_11 PF08279.12 gi|119872064|ref|YP_930071.1| - 5e-05 23.2 0.1 5.2e-05 23.1 0.1 1.1 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|119872064|ref|YP_930071.1| - 0.00022 21.1 0.0 0.00026 20.8 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|119872064|ref|YP_930071.1| - 0.00035 20.4 0.9 0.00045 20.1 0.9 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|119872064|ref|YP_930071.1| - 0.00053 20.0 0.0 0.00061 19.8 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.12 gi|119872064|ref|YP_930071.1| - 0.0016 18.6 0.1 0.0017 18.6 0.1 1.2 1 0 0 1 1 1 1 PaaX-like protein FaeA PF04703.12 gi|119872064|ref|YP_930071.1| - 0.0044 17.4 0.2 0.0054 17.1 0.2 1.1 1 0 0 1 1 1 1 FaeA-like protein DUF4423 PF14394.6 gi|119872064|ref|YP_930071.1| - 0.0069 16.1 0.1 0.0073 16.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) RuvB_C PF05491.13 gi|119872064|ref|YP_930071.1| - 0.01 15.7 0.1 0.011 15.6 0.1 1.1 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Rrf2 PF02082.20 gi|119872064|ref|YP_930071.1| - 0.011 16.0 0.1 0.013 15.8 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator DUF3253 PF11625.8 gi|119872064|ref|YP_930071.1| - 0.013 15.8 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) Lipoprotein_Ltp PF07553.11 gi|119872064|ref|YP_930071.1| - 0.018 15.3 0.1 0.031 14.5 0.1 1.3 1 0 0 1 1 1 0 Host cell surface-exposed lipoprotein Sigma70_r3 PF04539.16 gi|119872064|ref|YP_930071.1| - 0.018 15.1 0.0 0.024 14.7 0.0 1.3 1 1 0 1 1 1 0 Sigma-70 region 3 LexA_DNA_bind PF01726.16 gi|119872064|ref|YP_930071.1| - 0.04 13.7 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 LexA DNA binding domain HTH_27 PF13463.6 gi|119872064|ref|YP_930071.1| - 0.047 14.2 0.1 0.052 14.1 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain ANAPC2 PF08672.11 gi|119872064|ref|YP_930071.1| - 0.049 14.1 0.0 0.089 13.3 0.0 1.6 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 DUF1495 PF07381.11 gi|119872064|ref|YP_930071.1| - 0.058 13.2 0.0 0.084 12.7 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) CvfB_WH PF17783.1 gi|119872064|ref|YP_930071.1| - 0.08 12.8 0.1 0.4 10.5 0.1 1.9 1 1 0 1 1 1 0 CvfB-like winged helix domain FeoC PF09012.10 gi|119872064|ref|YP_930071.1| - 0.11 12.5 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_17 PF12728.7 gi|119872064|ref|YP_930071.1| - 0.16 12.1 1.6 0.86 9.8 0.7 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain DMRL_synthase PF00885.19 gi|119872065|ref|YP_930072.1| - 9.9e-34 116.2 2.8 1.1e-33 116.0 2.8 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Usp PF00582.26 gi|119872065|ref|YP_930072.1| - 0.51 10.9 4.9 1.4 9.5 0.3 2.2 2 0 0 2 2 2 0 Universal stress protein family IlvN PF07991.12 gi|119872066|ref|YP_930073.1| - 1.5e-76 255.5 0.7 2.4e-76 254.9 0.7 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|119872066|ref|YP_930073.1| - 7.6e-53 178.7 0.3 1e-52 178.2 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.15 gi|119872066|ref|YP_930073.1| - 8.9e-07 29.2 0.3 2.7e-06 27.6 0.0 1.9 3 0 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|119872066|ref|YP_930073.1| - 1.1e-06 28.1 0.0 2.1e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|119872066|ref|YP_930073.1| - 4.6e-06 27.1 0.1 1e-05 26.0 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|119872066|ref|YP_930073.1| - 1.7e-05 25.0 0.0 3.4e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|119872066|ref|YP_930073.1| - 0.1 12.2 0.9 0.48 10.0 0.9 2.1 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ACT_5 PF13710.6 gi|119872067|ref|YP_930074.1| - 2.7e-12 46.4 0.0 3.1e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|119872068|ref|YP_930075.1| - 1.3e-45 155.1 0.0 5.6e-43 146.5 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|119872068|ref|YP_930075.1| - 5.9e-45 152.4 0.0 2e-43 147.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|119872068|ref|YP_930075.1| - 5.3e-43 146.4 0.0 5.2e-42 143.2 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|119872068|ref|YP_930075.1| - 0.0011 18.8 0.5 0.0072 16.1 0.2 2.1 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SepF PF04472.12 gi|119872068|ref|YP_930075.1| - 0.019 15.2 0.0 0.065 13.5 0.0 1.9 2 0 0 2 2 2 0 Cell division protein SepF PIN_12 PF16289.5 gi|119872068|ref|YP_930075.1| - 0.047 14.2 0.6 1.7 9.1 0.0 2.5 2 0 0 2 2 2 0 PIN domain NUDIX PF00293.28 gi|119872069|ref|YP_930076.1| - 2.5e-13 50.2 0.1 3e-13 50.0 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain Beta-Casp PF10996.8 gi|119872072|ref|YP_930079.1| - 2.2e-14 53.7 0.0 6.1e-14 52.2 0.0 1.8 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|119872072|ref|YP_930079.1| - 2.6e-13 49.8 0.0 4.2e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|119872072|ref|YP_930079.1| - 2.3e-12 46.6 0.0 5.7e-12 45.4 0.0 1.7 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|119872072|ref|YP_930079.1| - 4.2e-10 40.0 0.1 6e-08 32.9 0.0 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119872072|ref|YP_930079.1| - 5.8e-10 39.0 0.0 8.8e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L26 PF16906.5 gi|119872073|ref|YP_930080.1| - 1.7e-27 95.7 0.6 2.1e-27 95.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|119872073|ref|YP_930080.1| - 1e-10 41.1 5.2 1e-10 41.1 5.2 1.8 2 0 0 2 2 2 1 KOW motif ribosomal_L24 PF17136.4 gi|119872073|ref|YP_930080.1| - 0.2 12.1 4.0 0.31 11.4 0.2 2.2 1 1 1 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ribosomal_S4e PF00900.20 gi|119872074|ref|YP_930081.1| - 9e-26 89.6 0.2 1.7e-25 88.7 0.2 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|119872074|ref|YP_930081.1| - 4.4e-11 42.3 0.1 9.9e-11 41.2 0.1 1.7 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.12 gi|119872074|ref|YP_930081.1| - 4.5e-11 42.7 2.4 4.5e-11 42.7 2.4 2.0 2 0 0 2 2 2 1 RS4NT (NUC023) domain ABC_tran PF00005.27 gi|119872076|ref|YP_930083.1| - 6.1e-32 111.0 0.0 8e-32 110.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119872076|ref|YP_930083.1| - 2.6e-19 69.5 0.3 4.5e-19 68.7 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|119872076|ref|YP_930083.1| - 9.4e-05 22.9 0.0 0.00017 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|119872076|ref|YP_930083.1| - 0.0001 22.3 0.1 0.08 12.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119872076|ref|YP_930083.1| - 0.00021 21.6 0.3 0.0015 18.8 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119872076|ref|YP_930083.1| - 0.003 17.2 0.1 0.0056 16.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NACHT PF05729.12 gi|119872076|ref|YP_930083.1| - 0.03 14.3 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|119872076|ref|YP_930083.1| - 0.032 12.9 0.1 1.3 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|119872076|ref|YP_930083.1| - 0.083 12.3 0.0 1.9 7.8 0.0 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain ATPase PF06745.13 gi|119872076|ref|YP_930083.1| - 0.091 12.1 0.7 0.85 8.9 0.1 2.0 2 0 0 2 2 2 0 KaiC NB-ARC PF00931.22 gi|119872076|ref|YP_930083.1| - 0.11 11.7 0.1 0.17 11.1 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|119872076|ref|YP_930083.1| - 0.14 12.3 0.1 0.35 11.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119872076|ref|YP_930083.1| - 0.14 11.8 0.1 0.52 10.0 0.1 1.7 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|119872076|ref|YP_930083.1| - 0.15 12.2 0.3 0.25 11.4 0.3 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain PIF1 PF05970.14 gi|119872076|ref|YP_930083.1| - 0.17 11.0 0.1 0.29 10.3 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase T2SSE PF00437.20 gi|119872076|ref|YP_930083.1| - 0.17 10.9 0.2 0.27 10.3 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_5 PF07728.14 gi|119872076|ref|YP_930083.1| - 0.18 11.8 0.0 0.32 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|119872076|ref|YP_930083.1| - 0.21 11.3 0.1 0.31 10.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119872077|ref|YP_930084.1| - 4.9e-28 98.4 0.0 7.1e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|119872077|ref|YP_930084.1| - 3.3e-18 66.0 0.2 5.5e-18 65.2 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|119872077|ref|YP_930084.1| - 3.5e-07 30.3 0.5 8.7e-05 22.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872077|ref|YP_930084.1| - 4.7e-07 29.5 0.4 6.2e-05 22.5 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|119872077|ref|YP_930084.1| - 8.4e-05 22.4 0.1 0.14 11.9 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119872077|ref|YP_930084.1| - 0.00042 20.6 0.1 0.012 15.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|119872077|ref|YP_930084.1| - 0.00073 19.0 0.3 0.015 14.7 0.2 2.1 2 0 0 2 2 2 1 Bacterial TniB protein AAA_29 PF13555.6 gi|119872077|ref|YP_930084.1| - 0.0022 17.7 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|119872077|ref|YP_930084.1| - 0.0067 16.3 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_5 PF07728.14 gi|119872077|ref|YP_930084.1| - 0.0078 16.2 0.0 0.054 13.5 0.0 2.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|119872077|ref|YP_930084.1| - 0.018 15.4 0.0 0.037 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|119872077|ref|YP_930084.1| - 0.071 13.0 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|119872077|ref|YP_930084.1| - 0.079 11.7 0.1 0.26 10.0 0.1 1.8 1 1 0 1 1 1 0 Predicted ATPase of the ABC class Pox_VLTF3 PF04947.14 gi|119872077|ref|YP_930084.1| - 0.082 12.6 0.4 0.18 11.5 0.1 1.6 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like AAA_25 PF13481.6 gi|119872077|ref|YP_930084.1| - 0.098 12.2 0.1 1.2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|119872077|ref|YP_930084.1| - 0.11 11.8 0.0 0.57 9.5 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|119872077|ref|YP_930084.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain PfkB PF00294.24 gi|119872078|ref|YP_930085.1| - 3.2e-10 39.8 0.0 6.2e-08 32.3 0.0 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|119872078|ref|YP_930085.1| - 0.19 11.1 0.0 0.36 10.2 0.0 1.4 2 0 0 2 2 2 0 Phosphomethylpyrimidine kinase CBS PF00571.28 gi|119872079|ref|YP_930086.1| - 1.4e-29 102.3 6.6 4e-17 62.4 2.3 3.3 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|119872079|ref|YP_930086.1| - 1.8e-29 101.2 0.0 3.9e-29 100.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|119872079|ref|YP_930086.1| - 2.5e-10 40.6 0.2 6.1e-10 39.3 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|119872079|ref|YP_930086.1| - 2.5e-06 27.3 0.5 3.9e-05 23.5 0.0 2.9 3 0 0 3 3 3 1 HTH domain Fe_dep_repress PF01325.19 gi|119872079|ref|YP_930086.1| - 6.1e-05 23.1 0.0 0.00013 22.1 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|119872079|ref|YP_930086.1| - 0.00061 19.7 0.0 0.0015 18.5 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|119872079|ref|YP_930086.1| - 0.0023 17.8 1.1 0.041 13.8 0.1 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119872079|ref|YP_930086.1| - 0.0024 17.7 0.0 0.0052 16.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|119872079|ref|YP_930086.1| - 0.0095 15.8 0.1 0.025 14.5 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|119872079|ref|YP_930086.1| - 0.015 15.7 0.0 0.037 14.4 0.0 1.6 2 0 0 2 2 2 0 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|119872079|ref|YP_930086.1| - 0.032 14.3 0.0 0.064 13.3 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus FeoC PF09012.10 gi|119872079|ref|YP_930086.1| - 0.059 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.6 gi|119872079|ref|YP_930086.1| - 0.061 13.3 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF5343 PF17278.2 gi|119872079|ref|YP_930086.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5343) TFIIE_alpha PF02002.17 gi|119872079|ref|YP_930086.1| - 0.15 11.9 0.1 0.74 9.7 0.0 2.0 2 0 0 2 2 2 0 TFIIE alpha subunit 2-Hacid_dh_C PF02826.19 gi|119872080|ref|YP_930087.1| - 1.3e-57 194.0 0.0 1.7e-57 193.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|119872080|ref|YP_930087.1| - 4.7e-27 94.3 0.0 5.3e-27 94.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|119872080|ref|YP_930087.1| - 2.1e-05 24.7 0.0 4.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|119872080|ref|YP_930087.1| - 0.00099 18.7 0.0 0.0026 17.4 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|119872080|ref|YP_930087.1| - 0.047 13.0 0.1 0.079 12.2 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Gp_dh_N PF00044.24 gi|119872080|ref|YP_930087.1| - 0.06 13.7 0.1 0.12 12.7 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|119872080|ref|YP_930087.1| - 0.063 13.9 0.1 0.43 11.2 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1328 PF07043.13 gi|119872080|ref|YP_930087.1| - 0.25 11.6 1.4 0.53 10.5 1.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1328) Aminotran_5 PF00266.19 gi|119872081|ref|YP_930088.1| - 1.8e-24 86.4 0.0 2.1e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|119872081|ref|YP_930088.1| - 1.3e-06 27.8 0.0 4.2e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|119872081|ref|YP_930088.1| - 5.8e-05 21.8 0.0 8.1e-05 21.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SHMT PF00464.19 gi|119872081|ref|YP_930088.1| - 0.15 10.6 0.0 0.23 10.0 0.0 1.4 1 1 0 1 1 1 0 Serine hydroxymethyltransferase DUF89 PF01937.19 gi|119872082|ref|YP_930089.1| - 1.9e-18 66.6 0.0 5.6e-16 58.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function DUF89 V-SNARE PF05008.15 gi|119872083|ref|YP_930090.1| - 0.0018 18.6 0.3 0.0037 17.6 0.3 1.5 1 0 0 1 1 1 1 Vesicle transport v-SNARE protein N-terminus Med4 PF10018.9 gi|119872083|ref|YP_930090.1| - 0.0023 17.6 0.1 0.0033 17.1 0.1 1.2 1 0 0 1 1 1 1 Vitamin-D-receptor interacting Mediator subunit 4 SKA1 PF07160.12 gi|119872083|ref|YP_930090.1| - 0.016 15.1 0.1 0.027 14.3 0.1 1.3 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Sec8_exocyst PF04048.14 gi|119872083|ref|YP_930090.1| - 0.017 15.0 1.6 0.62 9.9 0.2 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain OmpH PF03938.14 gi|119872083|ref|YP_930090.1| - 0.025 14.9 0.2 0.059 13.7 0.2 1.6 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) TRAF_BIRC3_bd PF16673.5 gi|119872083|ref|YP_930090.1| - 0.03 14.1 1.4 0.053 13.3 0.2 1.8 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain GAS PF13851.6 gi|119872083|ref|YP_930090.1| - 0.034 13.5 1.6 0.059 12.7 1.6 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Laminin_II PF06009.12 gi|119872083|ref|YP_930090.1| - 0.034 14.1 0.7 0.072 13.1 0.1 1.7 2 0 0 2 2 2 0 Laminin Domain II DUF948 PF06103.11 gi|119872083|ref|YP_930090.1| - 0.036 14.3 0.0 0.11 12.8 0.0 1.7 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Fez1 PF06818.15 gi|119872083|ref|YP_930090.1| - 0.038 14.4 0.2 0.042 14.3 0.2 1.2 1 0 0 1 1 1 0 Fez1 TMF_DNA_bd PF12329.8 gi|119872083|ref|YP_930090.1| - 0.054 13.5 3.0 0.1 12.6 3.0 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF4298 PF14131.6 gi|119872083|ref|YP_930090.1| - 0.07 13.1 0.9 0.34 10.9 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) ZapB PF06005.12 gi|119872083|ref|YP_930090.1| - 0.077 13.4 5.3 0.14 12.6 2.1 2.1 2 0 0 2 2 2 0 Cell division protein ZapB IFT57 PF10498.9 gi|119872083|ref|YP_930090.1| - 0.08 11.9 0.4 0.11 11.4 0.4 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 DUF3837 PF12939.7 gi|119872083|ref|YP_930090.1| - 0.1 13.0 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3837) TACC_C PF05010.14 gi|119872083|ref|YP_930090.1| - 0.15 11.8 2.6 0.53 10.0 1.9 2.0 2 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Exonuc_VII_S PF02609.16 gi|119872083|ref|YP_930090.1| - 0.15 12.1 2.7 0.36 10.9 2.6 1.8 1 1 0 1 1 1 0 Exonuclease VII small subunit Paralemmin PF03285.15 gi|119872083|ref|YP_930090.1| - 0.18 11.4 0.4 0.16 11.5 0.4 1.1 1 0 0 1 1 1 0 Paralemmin bZIP_1 PF00170.21 gi|119872083|ref|YP_930090.1| - 0.22 11.7 4.7 0.12 12.5 2.6 1.7 2 0 0 2 2 2 0 bZIP transcription factor FTA4 PF13093.6 gi|119872083|ref|YP_930090.1| - 0.26 11.2 2.5 0.43 10.4 2.4 1.5 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 SlyX PF04102.12 gi|119872083|ref|YP_930090.1| - 0.29 11.8 3.1 0.46 11.1 0.8 2.3 2 1 0 2 2 2 0 SlyX DivIVA PF05103.13 gi|119872083|ref|YP_930090.1| - 0.34 11.0 2.5 0.37 10.9 1.3 1.6 2 0 0 2 2 2 0 DivIVA protein COMP PF11598.8 gi|119872083|ref|YP_930090.1| - 0.98 9.9 3.5 13 6.3 0.1 2.3 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein tRNA_NucTransf2 PF09249.11 gi|119872084|ref|YP_930091.1| - 5.1e-44 149.1 0.2 1.6e-43 147.5 0.0 1.9 2 0 0 2 2 2 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|119872084|ref|YP_930091.1| - 5e-13 49.2 0.0 2.7e-12 46.8 0.0 2.2 1 1 1 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|119872084|ref|YP_930091.1| - 5e-05 23.5 0.0 8.2e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|119872084|ref|YP_930091.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase LigT_PEase PF02834.16 gi|119872085|ref|YP_930092.1| - 1.3e-31 108.6 0.2 4.7e-18 65.2 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.9 gi|119872085|ref|YP_930092.1| - 2.1e-16 60.5 0.0 3.2e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.6 gi|119872085|ref|YP_930092.1| - 9.7e-14 51.5 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily MarR PF01047.22 gi|119872086|ref|YP_930093.1| - 7.7e-08 32.2 0.1 5.7e-07 29.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|119872086|ref|YP_930093.1| - 2.2e-05 24.8 0.0 3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|119872086|ref|YP_930093.1| - 0.011 15.8 0.0 0.016 15.3 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.12 gi|119872086|ref|YP_930093.1| - 0.022 14.9 0.0 0.035 14.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|119872086|ref|YP_930093.1| - 0.047 13.6 0.1 0.077 12.9 0.1 1.4 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|119872086|ref|YP_930093.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation TF_Zn_Ribbon PF08271.12 gi|119872087|ref|YP_930094.1| - 1.8e-14 53.0 1.0 2.8e-14 52.4 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|119872087|ref|YP_930094.1| - 1.2e-10 41.3 0.3 6.2e-08 32.6 0.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat HTH_24 PF13412.6 gi|119872087|ref|YP_930094.1| - 0.00021 20.8 1.5 0.25 10.9 0.0 3.6 4 0 0 4 4 4 1 Winged helix-turn-helix DNA-binding zf-ribbon_3 PF13248.6 gi|119872087|ref|YP_930094.1| - 0.001 18.4 3.8 0.013 14.9 3.8 2.2 1 1 0 1 1 1 1 zinc-ribbon domain zf-RRN7 PF11781.8 gi|119872087|ref|YP_930094.1| - 0.0024 17.5 2.1 0.0043 16.7 2.1 1.4 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|119872087|ref|YP_930094.1| - 0.0033 17.5 0.0 0.0059 16.7 0.0 1.4 1 0 0 1 1 1 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|119872087|ref|YP_930094.1| - 0.026 14.4 0.7 0.06 13.3 0.7 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|119872087|ref|YP_930094.1| - 0.027 14.8 0.5 0.052 13.9 0.5 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|119872087|ref|YP_930094.1| - 0.031 14.0 0.7 4.1 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.17 gi|119872087|ref|YP_930094.1| - 0.038 13.7 0.8 0.068 12.9 0.8 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_19 PF12844.7 gi|119872087|ref|YP_930094.1| - 0.076 13.0 0.2 8.7 6.5 0.1 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain Elf1 PF05129.13 gi|119872087|ref|YP_930094.1| - 0.12 12.4 0.3 0.29 11.2 0.3 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like DUF1539 PF07560.11 gi|119872087|ref|YP_930094.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1539) Zn-ribbon_8 PF09723.10 gi|119872087|ref|YP_930094.1| - 0.14 12.3 0.9 0.34 11.1 0.9 1.6 1 1 0 1 1 1 0 Zinc ribbon domain HTH_10 PF04967.12 gi|119872087|ref|YP_930094.1| - 0.16 11.8 0.4 3.1 7.7 0.0 3.0 3 1 1 4 4 4 0 HTH DNA binding domain DZR PF12773.7 gi|119872087|ref|YP_930094.1| - 0.24 11.4 0.7 2.5 8.2 0.8 1.8 1 1 1 2 2 2 0 Double zinc ribbon zf-ISL3 PF14690.6 gi|119872087|ref|YP_930094.1| - 2 9.1 4.4 1.2 9.9 0.3 2.4 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Gar1 PF04410.14 gi|119872088|ref|YP_930095.1| - 0.0003 20.6 0.1 0.0003 20.6 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Ribosomal_S8e PF01201.22 gi|119872089|ref|YP_930096.1| - 1.9e-27 96.1 0.3 2.1e-27 95.9 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|119872090|ref|YP_930097.1| - 2.5e-17 63.6 0.1 3.1e-17 63.3 0.1 1.1 1 0 0 1 1 1 1 SRP19 protein LAGLIDADG_3 PF14528.6 gi|119872090|ref|YP_930097.1| - 0.085 13.2 0.1 0.12 12.7 0.1 1.4 1 1 0 1 1 1 0 LAGLIDADG-like domain LacI PF00356.21 gi|119872090|ref|YP_930097.1| - 0.11 12.3 0.1 0.34 10.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family ATP_bind_1 PF03029.17 gi|119872091|ref|YP_930098.1| - 1.9e-55 188.3 0.0 2.3e-55 188.0 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|119872091|ref|YP_930098.1| - 1.3e-06 28.1 0.1 5.8e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|119872091|ref|YP_930098.1| - 2.8e-06 26.5 0.0 8.6e-05 21.6 0.0 2.4 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|119872091|ref|YP_930098.1| - 3.4e-06 27.1 0.1 0.014 15.4 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|119872091|ref|YP_930098.1| - 3.7e-05 23.7 2.0 0.16 11.9 0.1 3.8 2 1 1 3 3 3 2 RsgA GTPase AAA_16 PF13191.6 gi|119872091|ref|YP_930098.1| - 0.0005 20.5 0.0 0.0006 20.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|119872091|ref|YP_930098.1| - 0.001 18.7 0.1 0.0026 17.4 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|119872091|ref|YP_930098.1| - 0.0012 19.0 0.0 0.0015 18.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.9 gi|119872091|ref|YP_930098.1| - 0.0013 18.5 0.6 2.1 8.1 0.0 3.6 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation CLP1_P PF16575.5 gi|119872091|ref|YP_930098.1| - 0.0021 17.9 0.1 0.043 13.6 0.0 2.3 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop NTPase_1 PF03266.15 gi|119872091|ref|YP_930098.1| - 0.0043 17.0 0.7 0.33 10.9 0.1 2.8 2 1 1 3 3 3 1 NTPase ArsA_ATPase PF02374.15 gi|119872091|ref|YP_930098.1| - 0.0045 16.2 0.1 0.009 15.2 0.1 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase cobW PF02492.19 gi|119872091|ref|YP_930098.1| - 0.0052 16.4 0.6 0.98 9.0 0.0 2.4 2 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|119872091|ref|YP_930098.1| - 0.0062 17.1 0.0 0.011 16.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter MobB PF03205.14 gi|119872091|ref|YP_930098.1| - 0.0064 16.4 0.0 0.017 15.0 0.0 1.7 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeoB_N PF02421.18 gi|119872091|ref|YP_930098.1| - 0.0089 15.6 0.3 1 8.9 0.2 2.5 2 0 0 2 2 2 1 Ferrous iron transport protein B AAA_30 PF13604.6 gi|119872091|ref|YP_930098.1| - 0.0097 15.6 0.0 0.024 14.4 0.0 1.6 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|119872091|ref|YP_930098.1| - 0.019 14.4 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_33 PF13671.6 gi|119872091|ref|YP_930098.1| - 0.034 14.3 0.0 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119872091|ref|YP_930098.1| - 0.036 14.0 0.0 0.065 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 gi|119872091|ref|YP_930098.1| - 0.037 13.8 0.1 0.037 13.8 0.1 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain APS_kinase PF01583.20 gi|119872091|ref|YP_930098.1| - 0.037 13.9 0.0 0.064 13.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.17 gi|119872091|ref|YP_930098.1| - 0.05 13.7 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_31 PF13614.6 gi|119872091|ref|YP_930098.1| - 0.051 13.5 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119872091|ref|YP_930098.1| - 0.065 13.8 0.0 0.096 13.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|119872091|ref|YP_930098.1| - 0.066 12.7 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region SRPRB PF09439.10 gi|119872091|ref|YP_930098.1| - 0.081 12.3 0.5 6.6 6.1 0.1 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_28 PF13521.6 gi|119872091|ref|YP_930098.1| - 0.11 12.7 0.0 0.24 11.7 0.0 1.5 2 0 0 2 2 1 0 AAA domain T2SSE PF00437.20 gi|119872091|ref|YP_930098.1| - 0.14 11.2 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NOG1 PF06858.14 gi|119872091|ref|YP_930098.1| - 0.16 11.8 0.4 0.52 10.1 0.4 1.9 1 1 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) NB-ARC PF00931.22 gi|119872091|ref|YP_930098.1| - 0.16 11.2 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Ploopntkinase3 PF18751.1 gi|119872091|ref|YP_930098.1| - 0.19 11.6 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_22 PF13401.6 gi|119872091|ref|YP_930098.1| - 0.19 12.0 0.3 0.41 10.9 0.3 1.9 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|119872091|ref|YP_930098.1| - 0.26 10.4 0.1 2.4 7.2 0.0 2.0 2 0 0 2 2 2 0 G-protein alpha subunit Ribosomal_L21e PF01157.18 gi|119872092|ref|YP_930099.1| - 3e-31 107.3 0.7 3.4e-31 107.1 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Arteri_nsp7a PF16749.5 gi|119872092|ref|YP_930099.1| - 0.25 11.5 0.1 1.3 9.2 0.0 1.8 1 1 0 2 2 2 0 Arterivirus nonstructural protein 7 alpha RNA_pol_Rpb4 PF03874.16 gi|119872093|ref|YP_930100.1| - 4.3e-08 33.5 4.2 5.4e-08 33.2 4.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Cnd1 PF12717.7 gi|119872093|ref|YP_930100.1| - 0.0017 18.5 1.3 0.0023 18.0 0.8 1.6 1 1 1 2 2 2 1 non-SMC mitotic condensation complex subunit 1 DUF655 PF04919.12 gi|119872094|ref|YP_930101.1| - 6.8e-49 166.3 2.0 7.9e-49 166.1 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|119872094|ref|YP_930101.1| - 7.3e-06 26.2 0.1 1.9e-05 24.9 0.1 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|119872094|ref|YP_930101.1| - 0.0016 18.7 0.1 0.0034 17.6 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|119872094|ref|YP_930101.1| - 0.013 16.1 0.4 0.041 14.5 0.4 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain eIF-5a PF01287.20 gi|119872095|ref|YP_930102.1| - 2.3e-10 40.4 0.2 3.8e-10 39.7 0.2 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|119872095|ref|YP_930102.1| - 1.6e-06 28.0 0.1 3.8e-06 26.8 0.1 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|119872095|ref|YP_930102.1| - 0.0038 17.2 0.0 0.0085 16.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PNP_UDP_1 PF01048.20 gi|119872096|ref|YP_930103.1| - 1.8e-40 138.7 0.0 2e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF2977 PF11192.8 gi|119872096|ref|YP_930103.1| - 0.067 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2977) SUI1 PF01253.22 gi|119872098|ref|YP_930105.1| - 1.2e-16 61.0 0.1 2.2e-16 60.1 0.1 1.5 1 1 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|119872098|ref|YP_930105.1| - 0.017 15.4 0.1 0.023 15.0 0.1 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) tRNA-synt_1d PF00750.19 gi|119872100|ref|YP_930107.1| - 2.1e-34 119.0 1.3 1.1e-32 113.3 1.3 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|119872100|ref|YP_930107.1| - 2.4e-27 95.5 1.0 3.1e-26 91.9 0.1 2.5 2 0 0 2 2 2 1 DALR anticodon binding domain tRNA-synt_1 PF00133.22 gi|119872100|ref|YP_930107.1| - 0.0011 17.4 0.1 0.25 9.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|119872100|ref|YP_930107.1| - 0.0064 15.3 0.1 0.16 10.7 0.1 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (M) FBA PF04300.13 gi|119872100|ref|YP_930107.1| - 0.022 14.4 0.2 0.39 10.4 0.0 2.3 2 0 0 2 2 2 0 F-box associated region tRNA-synt_1e PF01406.19 gi|119872100|ref|YP_930107.1| - 0.041 13.2 0.0 0.44 9.9 0.0 2.5 3 1 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain DUF4404 PF14357.6 gi|119872100|ref|YP_930107.1| - 0.044 14.4 0.8 0.34 11.6 0.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) Ribosomal_S28e PF01200.18 gi|119872101|ref|YP_930108.1| - 3.9e-31 106.8 4.2 4.4e-31 106.7 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|119872102|ref|YP_930109.1| - 1.3e-20 73.4 1.8 1.3e-20 73.3 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|119872102|ref|YP_930109.1| - 0.00026 20.9 0.5 0.00037 20.4 0.5 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|119872102|ref|YP_930109.1| - 0.0023 18.0 0.0 0.004 17.2 0.0 1.3 1 1 0 1 1 1 1 YHS domain VATC PF18716.1 gi|119872102|ref|YP_930109.1| - 0.057 13.3 2.5 0.15 12.0 2.5 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ta0938 PF11494.8 gi|119872102|ref|YP_930109.1| - 0.074 13.3 0.1 0.074 13.3 0.1 1.1 1 0 0 1 1 1 0 Ta0938 Ribosomal_L7Ae PF01248.26 gi|119872103|ref|YP_930110.1| - 2e-28 98.0 0.3 2.7e-28 97.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|119872103|ref|YP_930110.1| - 8.6e-06 25.6 0.1 1.4e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|119872103|ref|YP_930110.1| - 0.016 15.3 0.0 0.02 15.0 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 BPD_transp_2 PF02653.16 gi|119872104|ref|YP_930111.1| - 3.3e-41 141.2 30.6 4.8e-41 140.7 30.6 1.2 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|119872105|ref|YP_930112.1| - 3.3e-32 111.7 41.3 3.9e-32 111.5 41.3 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ResB PF05140.14 gi|119872105|ref|YP_930112.1| - 0.25 10.0 0.7 0.36 9.5 0.7 1.2 1 0 0 1 1 1 0 ResB-like family ANF_receptor PF01094.28 gi|119872106|ref|YP_930113.1| - 2.4e-55 188.1 0.0 3e-55 187.7 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|119872106|ref|YP_930113.1| - 1.2e-49 169.8 7.1 1.5e-49 169.5 7.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|119872106|ref|YP_930113.1| - 1.4e-10 40.6 0.0 4.4e-10 39.0 0.0 1.6 2 0 0 2 2 2 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|119872106|ref|YP_930113.1| - 1.3e-07 31.0 0.0 3.3e-07 29.6 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein domain PLRV_ORF5 PF01690.17 gi|119872106|ref|YP_930113.1| - 4.2 6.0 7.4 7.1 5.2 7.4 1.3 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein ABC_tran PF00005.27 gi|119872107|ref|YP_930114.1| - 1.8e-27 96.5 0.0 2.4e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|119872107|ref|YP_930114.1| - 1.5e-07 31.2 0.2 2.8e-07 30.3 0.2 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|119872107|ref|YP_930114.1| - 1.6e-07 31.5 0.1 2.6e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119872107|ref|YP_930114.1| - 2.1e-07 31.7 0.0 3.6e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119872107|ref|YP_930114.1| - 9.1e-07 28.5 0.0 1.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|119872107|ref|YP_930114.1| - 6.5e-06 26.1 0.0 7.7e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|119872107|ref|YP_930114.1| - 7.9e-06 25.5 0.3 0.00082 18.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|119872107|ref|YP_930114.1| - 1.7e-05 24.6 0.1 0.00016 21.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119872107|ref|YP_930114.1| - 0.00055 20.4 0.0 0.00078 19.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119872107|ref|YP_930114.1| - 0.00084 19.3 0.1 0.0041 17.0 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|119872107|ref|YP_930114.1| - 0.0039 17.5 0.6 0.041 14.2 0.1 2.2 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|119872107|ref|YP_930114.1| - 0.0051 15.7 0.7 0.014 14.2 0.2 1.8 2 0 0 2 2 2 1 Predicted ATPase of the ABC class ATPase_2 PF01637.18 gi|119872107|ref|YP_930114.1| - 0.0059 16.6 0.1 0.013 15.4 0.1 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|119872107|ref|YP_930114.1| - 0.0079 16.4 0.1 0.042 14.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|119872107|ref|YP_930114.1| - 0.014 15.0 0.4 0.061 12.9 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|119872107|ref|YP_930114.1| - 0.015 14.0 0.0 0.019 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|119872107|ref|YP_930114.1| - 0.022 14.3 0.5 0.2 11.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain DUF3232 PF11554.8 gi|119872107|ref|YP_930114.1| - 0.029 14.7 0.1 0.057 13.8 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3232) AAA_27 PF13514.6 gi|119872107|ref|YP_930114.1| - 0.031 13.9 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119872107|ref|YP_930114.1| - 0.04 13.8 0.1 0.083 12.8 0.1 1.5 1 0 0 1 1 1 0 NACHT domain DLIC PF05783.11 gi|119872107|ref|YP_930114.1| - 0.041 12.7 0.0 0.059 12.2 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_19 PF13245.6 gi|119872107|ref|YP_930114.1| - 0.041 14.2 0.2 0.11 12.8 0.2 1.7 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|119872107|ref|YP_930114.1| - 0.043 13.5 0.1 0.1 12.3 0.0 1.6 2 0 0 2 2 1 0 Thymidylate kinase AAA PF00004.29 gi|119872107|ref|YP_930114.1| - 0.047 14.1 0.4 0.14 12.6 0.4 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119872107|ref|YP_930114.1| - 0.053 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain T2SSE PF00437.20 gi|119872107|ref|YP_930114.1| - 0.06 12.4 0.1 0.1 11.6 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.6 gi|119872107|ref|YP_930114.1| - 0.068 13.2 0.3 0.63 10.1 0.1 2.2 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|119872107|ref|YP_930114.1| - 0.078 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|119872107|ref|YP_930114.1| - 0.097 12.4 0.1 5.7 6.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein RecA PF00154.21 gi|119872107|ref|YP_930114.1| - 0.11 12.0 0.3 0.25 10.8 0.1 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Csm4_C PF17953.1 gi|119872107|ref|YP_930114.1| - 0.14 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 CRISPR Csm4 C-terminal domain MMR_HSR1 PF01926.23 gi|119872107|ref|YP_930114.1| - 0.14 12.3 0.9 0.4 10.8 0.9 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|119872107|ref|YP_930114.1| - 0.15 11.7 0.2 0.25 11.0 0.2 1.4 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|119872107|ref|YP_930114.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MOZART2 PF12926.7 gi|119872107|ref|YP_930114.1| - 0.2 11.3 1.4 4.9 6.8 1.4 2.6 1 1 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated ATP_bind_1 PF03029.17 gi|119872107|ref|YP_930114.1| - 0.21 11.4 0.4 0.38 10.5 0.1 1.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MFS_1 PF07690.16 gi|119872108|ref|YP_930115.1| - 5.7e-13 48.5 48.1 9.4e-12 44.5 31.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF962 PF06127.11 gi|119872108|ref|YP_930115.1| - 0.058 13.5 3.7 3.3 7.9 3.7 3.0 1 1 0 1 1 1 0 Protein of unknown function (DUF962) DUF2976 PF11190.8 gi|119872108|ref|YP_930115.1| - 0.27 11.1 0.0 0.27 11.1 0.0 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF2976) Methyltransf_11 PF08241.12 gi|119872109|ref|YP_930116.1| - 1.1e-05 25.9 0.0 2e-05 25.1 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872109|ref|YP_930116.1| - 4.9e-05 24.0 0.0 7.5e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872109|ref|YP_930116.1| - 0.0046 17.7 0.0 0.0075 17.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872109|ref|YP_930116.1| - 0.021 14.6 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872109|ref|YP_930116.1| - 0.043 13.6 0.0 0.045 13.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ATPase PF06745.13 gi|119872110|ref|YP_930117.1| - 8.4e-72 241.2 0.1 9.7e-72 241.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119872110|ref|YP_930117.1| - 4.1e-05 23.2 0.0 6.4e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|119872110|ref|YP_930117.1| - 0.00076 18.9 0.0 0.0014 18.0 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|119872110|ref|YP_930117.1| - 0.00083 18.1 0.1 0.2 10.3 0.0 2.2 2 0 0 2 2 2 2 GvpD gas vesicle protein Rad51 PF08423.11 gi|119872110|ref|YP_930117.1| - 0.0021 17.4 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad51 SRP54 PF00448.22 gi|119872111|ref|YP_930118.1| - 3.2e-67 226.0 0.3 4.8e-67 225.4 0.3 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|119872111|ref|YP_930118.1| - 3.1e-25 88.7 0.0 1.7e-23 83.1 0.0 2.8 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|119872111|ref|YP_930118.1| - 1.1e-13 51.2 0.1 1e-12 48.1 0.0 2.7 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|119872111|ref|YP_930118.1| - 3.9e-10 39.9 0.0 2.4e-09 37.3 0.0 2.2 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|119872111|ref|YP_930118.1| - 3.2e-05 24.4 0.5 0.00014 22.3 0.1 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|119872111|ref|YP_930118.1| - 5.9e-05 23.0 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|119872111|ref|YP_930118.1| - 0.0001 21.6 0.0 0.0002 20.7 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin CLP1_P PF16575.5 gi|119872111|ref|YP_930118.1| - 0.00013 21.8 0.1 0.063 13.1 0.0 2.4 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop KTI12 PF08433.10 gi|119872111|ref|YP_930118.1| - 0.00013 21.5 0.0 0.00028 20.4 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|119872111|ref|YP_930118.1| - 0.00025 21.5 0.0 0.00066 20.1 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119872111|ref|YP_930118.1| - 0.00025 21.3 0.0 0.0015 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain MobB PF03205.14 gi|119872111|ref|YP_930118.1| - 0.00041 20.3 0.0 0.0011 18.9 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_31 PF13614.6 gi|119872111|ref|YP_930118.1| - 0.00043 20.3 0.1 0.0015 18.5 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|119872111|ref|YP_930118.1| - 0.00051 19.8 0.0 0.00092 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|119872111|ref|YP_930118.1| - 0.00051 19.4 0.3 0.075 12.3 0.3 2.3 1 1 0 1 1 1 1 ATPase MipZ ParA PF10609.9 gi|119872111|ref|YP_930118.1| - 0.00078 19.0 0.1 0.0028 17.1 0.0 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_33 PF13671.6 gi|119872111|ref|YP_930118.1| - 0.0011 19.2 0.0 0.002 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|119872111|ref|YP_930118.1| - 0.0013 18.4 2.9 0.029 13.9 2.9 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.15 gi|119872111|ref|YP_930118.1| - 0.0015 18.5 2.1 0.031 14.2 0.0 2.8 3 0 0 3 3 3 1 NTPase AAA_28 PF13521.6 gi|119872111|ref|YP_930118.1| - 0.0016 18.7 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119872111|ref|YP_930118.1| - 0.0018 18.0 0.1 0.33 10.7 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|119872111|ref|YP_930118.1| - 0.0022 18.1 0.1 0.0068 16.5 0.1 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase Thymidylate_kin PF02223.17 gi|119872111|ref|YP_930118.1| - 0.0035 17.0 1.5 0.012 15.3 0.0 2.6 3 1 0 3 3 2 1 Thymidylate kinase AAA_30 PF13604.6 gi|119872111|ref|YP_930118.1| - 0.0037 17.0 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|119872111|ref|YP_930118.1| - 0.0038 16.2 0.1 0.013 14.5 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|119872111|ref|YP_930118.1| - 0.007 16.7 0.1 0.058 13.8 0.1 2.1 1 1 0 1 1 1 1 RNA helicase LytR_C PF13399.6 gi|119872111|ref|YP_930118.1| - 0.0089 17.0 0.2 0.044 14.8 0.2 2.4 1 1 0 1 1 1 1 LytR cell envelope-related transcriptional attenuator VirC1 PF07015.11 gi|119872111|ref|YP_930118.1| - 0.011 15.1 0.1 0.094 12.0 0.0 2.3 2 0 0 2 2 2 0 VirC1 protein AAA_18 PF13238.6 gi|119872111|ref|YP_930118.1| - 0.011 16.3 0.0 0.029 14.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|119872111|ref|YP_930118.1| - 0.012 15.3 0.6 1.3 8.8 0.1 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA PF00004.29 gi|119872111|ref|YP_930118.1| - 0.015 15.8 0.3 0.068 13.6 0.1 2.5 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|119872111|ref|YP_930118.1| - 0.017 15.2 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Gtr1_RagA PF04670.12 gi|119872111|ref|YP_930118.1| - 0.019 14.3 0.2 0.056 12.8 0.2 1.8 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_14 PF13173.6 gi|119872111|ref|YP_930118.1| - 0.026 14.6 0.0 0.062 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|119872111|ref|YP_930118.1| - 0.027 13.6 0.3 0.085 11.9 0.0 1.8 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase PFOR_II PF17147.4 gi|119872111|ref|YP_930118.1| - 0.029 14.7 0.7 0.65 10.3 0.0 3.2 2 2 1 4 4 4 0 Pyruvate:ferredoxin oxidoreductase core domain II ATPase PF06745.13 gi|119872111|ref|YP_930118.1| - 0.031 13.6 0.1 0.08 12.3 0.1 1.7 1 0 0 1 1 1 0 KaiC AAA_5 PF07728.14 gi|119872111|ref|YP_930118.1| - 0.034 14.1 0.1 0.097 12.7 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) G-alpha PF00503.20 gi|119872111|ref|YP_930118.1| - 0.035 13.3 0.0 0.045 12.9 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit 6PF2K PF01591.18 gi|119872111|ref|YP_930118.1| - 0.037 13.3 0.0 0.071 12.4 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase AAA_19 PF13245.6 gi|119872111|ref|YP_930118.1| - 0.04 14.3 0.1 1.5 9.2 0.0 2.8 3 0 0 3 3 2 0 AAA domain SRPRB PF09439.10 gi|119872111|ref|YP_930118.1| - 0.047 13.1 0.4 5 6.5 0.1 2.3 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF1611 PF07755.11 gi|119872111|ref|YP_930118.1| - 0.049 12.9 0.0 0.15 11.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain NACHT PF05729.12 gi|119872111|ref|YP_930118.1| - 0.052 13.5 0.1 0.12 12.3 0.1 1.6 1 0 0 1 1 1 0 NACHT domain ArsA_ATPase PF02374.15 gi|119872111|ref|YP_930118.1| - 0.058 12.6 1.6 0.41 9.8 0.2 2.8 2 1 0 2 2 2 0 Anion-transporting ATPase T2SSE PF00437.20 gi|119872111|ref|YP_930118.1| - 0.08 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Glyco_transf_4 PF13439.6 gi|119872111|ref|YP_930118.1| - 0.12 12.3 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 ATP_bind_1 PF03029.17 gi|119872111|ref|YP_930118.1| - 0.13 12.0 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Bap31_Bap29_C PF18035.1 gi|119872111|ref|YP_930118.1| - 0.26 11.3 4.4 0.13 12.3 0.9 2.4 2 0 0 2 2 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain AAA_26 PF13500.6 gi|119872111|ref|YP_930118.1| - 0.35 10.7 2.4 3.2 7.5 2.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|119872111|ref|YP_930118.1| - 0.43 10.1 2.1 7.8 6.0 2.1 2.6 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|119872111|ref|YP_930118.1| - 0.5 10.4 3.5 1.4 8.9 0.3 2.7 3 0 0 3 3 2 0 Helicase HerA, central domain Methyltrn_RNA_2 PF04013.12 gi|119872112|ref|YP_930119.1| - 2.4e-05 24.1 0.0 3.2e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase THUMP PF02926.17 gi|119872113|ref|YP_930120.1| - 5.2e-14 52.6 1.3 1.3e-13 51.3 1.0 1.8 2 0 0 2 2 2 1 THUMP domain GATase PF00117.28 gi|119872114|ref|YP_930121.1| - 3e-38 131.5 0.0 4.7e-38 130.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|119872114|ref|YP_930121.1| - 4.5e-33 113.2 0.2 8e-33 112.4 0.2 1.4 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|119872114|ref|YP_930121.1| - 4.1e-13 49.0 0.1 3.6e-08 32.8 0.0 2.2 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|119872114|ref|YP_930121.1| - 5.3e-09 36.1 0.5 7.1e-08 32.5 0.5 2.3 1 1 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.20 gi|119872114|ref|YP_930121.1| - 9.9e-05 22.2 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|119872114|ref|YP_930121.1| - 0.00053 18.9 0.0 0.025 13.4 0.0 2.3 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|119872114|ref|YP_930121.1| - 0.00078 19.0 0.0 0.012 15.2 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|119872114|ref|YP_930121.1| - 0.0084 15.7 0.0 0.27 10.8 0.0 2.3 2 0 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) Glyco_transf_4 PF13439.6 gi|119872114|ref|YP_930121.1| - 0.06 13.3 0.0 1.3 9.0 0.0 2.5 2 0 0 2 2 2 0 Glycosyltransferase Family 4 SpoU_sub_bind PF08032.12 gi|119872114|ref|YP_930121.1| - 0.11 12.8 0.2 1.2 9.5 0.0 2.5 3 0 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding G_glu_transpept PF01019.21 gi|119872115|ref|YP_930122.1| - 3.8e-57 194.2 0.0 1.9e-55 188.6 0.0 2.3 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase SBP_bac_5 PF00496.22 gi|119872116|ref|YP_930123.1| - 6.2e-92 308.5 0.1 9e-92 307.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TMEM119 PF15724.5 gi|119872116|ref|YP_930123.1| - 0.24 11.5 1.6 0.38 10.8 1.6 1.3 1 0 0 1 1 1 0 TMEM119 family BPD_transp_1 PF00528.22 gi|119872117|ref|YP_930124.1| - 5.9e-24 84.8 9.7 5.9e-24 84.8 9.7 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|119872117|ref|YP_930124.1| - 0.0035 17.3 0.4 0.0035 17.3 0.4 4.0 4 1 1 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|119872118|ref|YP_930125.1| - 2.3e-36 125.3 14.9 2.3e-36 125.3 14.9 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Baculo_11_kDa PF06143.11 gi|119872118|ref|YP_930125.1| - 0.38 10.4 8.5 0.076 12.6 1.7 2.8 2 0 0 2 2 2 0 Baculovirus 11 kDa family FliH PF02108.16 gi|119872121|ref|YP_930128.1| - 0.061 13.4 0.1 0.099 12.7 0.1 1.3 1 0 0 1 1 1 0 Flagellar assembly protein FliH Ribosomal_L6 PF00347.23 gi|119872122|ref|YP_930129.1| - 1.9e-19 70.1 7.2 1.3e-09 38.6 1.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 CooT PF10133.9 gi|119872122|ref|YP_930129.1| - 0.58 10.5 2.7 8.8 6.7 0.1 2.9 2 1 1 3 3 3 0 CO dehydrogenase accessory protein CooT UbiA PF01040.18 gi|119872123|ref|YP_930130.1| - 3.2e-33 115.1 22.2 4e-33 114.8 22.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Thioredoxin PF00085.20 gi|119872124|ref|YP_930131.1| - 1.1e-11 44.6 0.0 1.5e-11 44.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|119872124|ref|YP_930131.1| - 1.8e-06 28.0 0.1 2.5e-06 27.5 0.1 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|119872124|ref|YP_930131.1| - 4.1e-06 27.2 2.0 7.2e-05 23.2 2.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|119872124|ref|YP_930131.1| - 2.9e-05 24.0 0.0 6.7e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|119872124|ref|YP_930131.1| - 0.097 12.9 0.3 0.2 11.9 0.3 1.7 1 1 0 1 1 1 0 Glutaredoxin DIM1 PF02966.16 gi|119872124|ref|YP_930131.1| - 0.12 12.1 0.0 0.18 11.6 0.0 1.3 1 1 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_4 PF13462.6 gi|119872124|ref|YP_930131.1| - 0.21 11.7 1.3 9.2 6.4 0.3 2.1 1 1 1 2 2 2 0 Thioredoxin DSBA PF01323.20 gi|119872124|ref|YP_930131.1| - 0.45 10.3 1.4 15 5.3 0.6 2.1 1 1 1 2 2 2 0 DSBA-like thioredoxin domain Pyr_redox_2 PF07992.14 gi|119872125|ref|YP_930132.1| - 2.2e-68 230.6 5.2 2.8e-68 230.3 5.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119872125|ref|YP_930132.1| - 6.2e-25 87.6 11.4 4.8e-21 75.1 0.9 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119872125|ref|YP_930132.1| - 1.7e-20 73.5 4.6 5.7e-18 65.2 0.4 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|119872125|ref|YP_930132.1| - 2.9e-17 62.9 0.3 1.3e-16 60.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|119872125|ref|YP_930132.1| - 2.3e-12 47.2 14.8 0.001 18.8 1.3 4.1 2 2 2 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|119872125|ref|YP_930132.1| - 2.1e-09 36.6 9.7 0.015 14.1 0.7 4.2 3 1 1 4 4 4 4 HI0933-like protein K_oxygenase PF13434.6 gi|119872125|ref|YP_930132.1| - 1.1e-08 34.6 0.4 1.2e-06 28.0 0.0 2.5 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|119872125|ref|YP_930132.1| - 1e-07 32.1 1.5 0.00098 19.3 0.2 3.0 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|119872125|ref|YP_930132.1| - 1.5e-05 24.3 12.9 0.013 14.6 1.3 3.7 2 2 2 4 4 4 3 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|119872125|ref|YP_930132.1| - 1.9e-05 24.7 5.7 1.6 8.7 0.1 4.2 4 0 0 4 4 4 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|119872125|ref|YP_930132.1| - 6.8e-05 22.3 5.1 0.043 13.1 1.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|119872125|ref|YP_930132.1| - 0.00022 21.6 2.1 0.3 11.6 0.2 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|119872125|ref|YP_930132.1| - 0.00097 18.5 2.5 0.11 11.7 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain TrkA_N PF02254.18 gi|119872125|ref|YP_930132.1| - 0.0012 19.0 0.2 0.13 12.5 0.1 2.6 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|119872125|ref|YP_930132.1| - 0.0032 16.8 1.1 0.032 13.6 0.0 2.4 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|119872125|ref|YP_930132.1| - 0.014 14.7 0.6 0.24 10.6 0.0 2.3 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|119872125|ref|YP_930132.1| - 0.014 15.3 0.2 0.014 15.3 0.2 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|119872125|ref|YP_930132.1| - 0.016 14.5 0.4 0.52 9.5 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|119872125|ref|YP_930132.1| - 0.017 14.2 1.6 0.017 14.2 1.6 3.0 2 1 0 3 3 3 0 FAD binding domain Trp_halogenase PF04820.14 gi|119872125|ref|YP_930132.1| - 0.028 13.3 0.4 0.028 13.3 0.4 2.8 3 1 1 4 4 4 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|119872125|ref|YP_930132.1| - 0.044 12.8 6.3 0.054 12.5 0.5 2.5 3 0 0 3 3 3 0 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|119872125|ref|YP_930132.1| - 0.055 12.8 14.7 0.036 13.4 1.8 3.4 3 1 1 4 4 4 0 FAD dependent oxidoreductase F420_oxidored PF03807.17 gi|119872125|ref|YP_930132.1| - 0.22 12.1 3.4 13 6.4 0.0 3.6 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent Ldh_1_N PF00056.23 gi|119872126|ref|YP_930133.1| - 4.2e-40 137.1 0.0 5.9e-40 136.6 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|119872126|ref|YP_930133.1| - 4.5e-20 72.2 0.0 9.2e-20 71.2 0.0 1.5 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|119872126|ref|YP_930133.1| - 2.4e-05 24.0 0.2 0.0006 19.4 0.0 2.3 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|119872126|ref|YP_930133.1| - 0.007 16.0 2.4 0.0082 15.7 0.6 1.9 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Cnd1_N PF12922.7 gi|119872127|ref|YP_930134.1| - 0.029 14.2 2.5 0.036 13.9 2.5 1.1 1 0 0 1 1 1 0 non-SMC mitotic condensation complex subunit 1, N-term Peptidase_S49_N PF08496.10 gi|119872127|ref|YP_930134.1| - 0.034 14.2 4.3 0.044 13.9 4.3 1.2 1 0 0 1 1 1 0 Peptidase family S49 N-terminal Nup188_C PF18378.1 gi|119872127|ref|YP_930134.1| - 0.038 12.8 0.7 0.046 12.6 0.7 1.1 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain Thioredoxin_3 PF13192.6 gi|119872128|ref|YP_930135.1| - 1.1e-15 57.4 0.1 1.2e-10 41.3 0.2 2.5 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|119872128|ref|YP_930135.1| - 6.6e-05 22.8 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|119872128|ref|YP_930135.1| - 0.0003 20.7 0.0 0.0011 18.8 0.0 1.9 3 0 0 3 3 3 1 F plasmid transfer operon protein Glutaredoxin PF00462.24 gi|119872128|ref|YP_930135.1| - 0.013 15.7 2.3 0.15 12.3 0.1 3.1 3 0 0 3 3 3 0 Glutaredoxin Thioredoxin_2 PF13098.6 gi|119872128|ref|YP_930135.1| - 0.025 15.0 1.3 0.15 12.5 0.2 2.6 2 2 0 2 2 2 0 Thioredoxin-like domain ABC_transp_aux PF09822.9 gi|119872128|ref|YP_930135.1| - 0.13 11.7 0.0 0.24 10.8 0.0 1.4 1 1 0 1 1 1 0 ABC-type uncharacterized transport system Ham1p_like PF01725.16 gi|119872129|ref|YP_930136.1| - 2.4e-47 161.3 0.0 2.6e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family CBS PF00571.28 gi|119872130|ref|YP_930137.1| - 9.1e-46 154.1 14.5 5.2e-13 49.2 0.0 4.2 4 0 0 4 4 4 4 CBS domain DEAD PF00270.29 gi|119872132|ref|YP_930139.1| - 2.1e-33 115.6 0.0 2.3e-32 112.2 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|119872132|ref|YP_930139.1| - 1.2e-32 113.3 0.4 4e-32 111.6 0.1 2.1 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|119872132|ref|YP_930139.1| - 2e-19 70.0 0.0 1.5e-17 63.9 0.0 2.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119872132|ref|YP_930139.1| - 7.3e-11 42.4 0.0 1.8e-10 41.1 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|119872132|ref|YP_930139.1| - 0.005 16.4 0.2 0.014 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|119872132|ref|YP_930139.1| - 0.058 13.7 0.0 0.23 11.8 0.0 2.0 1 1 0 1 1 1 0 AAA domain HypA PF01155.19 gi|119872132|ref|YP_930139.1| - 0.17 11.9 0.0 0.53 10.3 0.0 1.8 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_32 PF13565.6 gi|119872132|ref|YP_930139.1| - 1.1 10.0 7.0 0.68 10.6 0.1 4.0 4 0 0 4 4 4 0 Homeodomain-like domain DUF1192 PF06698.11 gi|119872135|ref|YP_930142.1| - 0.042 13.9 0.7 0.042 13.9 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) RHH_1 PF01402.21 gi|119872136|ref|YP_930143.1| - 1.2e-05 25.1 2.1 1.3e-05 24.9 0.2 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family MitMem_reg PF13012.6 gi|119872136|ref|YP_930143.1| - 0.012 16.0 0.2 0.016 15.6 0.2 1.3 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function Glycos_transf_2 PF00535.26 gi|119872137|ref|YP_930144.1| - 1.5e-14 54.2 0.0 2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|119872137|ref|YP_930144.1| - 1.2e-13 51.0 0.0 1.8e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|119872137|ref|YP_930144.1| - 1.1e-08 35.3 0.0 1.8e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|119872137|ref|YP_930144.1| - 0.2 11.1 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 PhoR PF11808.8 gi|119872138|ref|YP_930145.1| - 1.9 9.0 9.6 0.12 12.8 3.3 1.9 1 1 1 2 2 2 0 Phosphate regulon sensor protein PhoR ABC_tran PF00005.27 gi|119872139|ref|YP_930146.1| - 2e-39 135.2 0.0 8.7e-21 74.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|119872139|ref|YP_930146.1| - 6.6e-15 55.1 2.2 3.8e-06 26.5 0.2 3.4 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|119872139|ref|YP_930146.1| - 2.9e-13 50.3 2.7 0.00046 20.1 0.1 4.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|119872139|ref|YP_930146.1| - 2e-11 43.5 4.3 5.5e-11 42.1 4.3 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4_6 PF12837.7 gi|119872139|ref|YP_930146.1| - 1.7e-08 34.2 14.2 1.6e-05 24.8 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119872139|ref|YP_930146.1| - 3e-07 30.0 3.3 3e-07 30.0 3.3 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872139|ref|YP_930146.1| - 0.00011 22.2 10.3 0.00021 21.3 10.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA PF00004.29 gi|119872139|ref|YP_930146.1| - 0.00014 22.3 0.0 0.17 12.3 0.0 2.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Fer4_10 PF13237.6 gi|119872139|ref|YP_930146.1| - 0.00015 21.8 12.3 0.0014 18.7 12.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain MMR_HSR1 PF01926.23 gi|119872139|ref|YP_930146.1| - 0.00023 21.2 0.1 0.019 15.0 0.0 2.8 2 1 0 2 2 2 1 50S ribosome-binding GTPase Fer4_2 PF12797.7 gi|119872139|ref|YP_930146.1| - 0.00031 20.7 11.6 0.0013 18.7 1.3 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872139|ref|YP_930146.1| - 0.00056 20.0 9.7 0.0015 18.7 9.5 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|119872139|ref|YP_930146.1| - 0.00059 19.8 0.0 0.0088 16.0 0.0 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|119872139|ref|YP_930146.1| - 0.0013 18.6 2.6 0.074 12.8 0.3 3.2 4 0 0 4 4 3 1 AAA ATPase domain Fer4_7 PF12838.7 gi|119872139|ref|YP_930146.1| - 0.0017 18.9 12.1 0.0024 18.4 2.0 2.2 1 1 2 3 3 3 2 4Fe-4S dicluster domain SbcCD_C PF13558.6 gi|119872139|ref|YP_930146.1| - 0.0022 18.2 0.1 3.8 7.8 0.0 3.0 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.14 gi|119872139|ref|YP_930146.1| - 0.003 17.4 0.4 0.062 13.2 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|119872139|ref|YP_930146.1| - 0.0032 17.2 0.8 0.11 12.2 0.3 2.3 2 0 0 2 2 2 1 AAA domain Fer4_16 PF13484.6 gi|119872139|ref|YP_930146.1| - 0.0036 18.2 7.4 0.015 16.2 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain RuvB_N PF05496.12 gi|119872139|ref|YP_930146.1| - 0.0039 17.0 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|119872139|ref|YP_930146.1| - 0.0048 16.9 2.4 0.48 10.5 0.0 3.2 3 1 1 4 4 3 1 AAA domain AAA_22 PF13401.6 gi|119872139|ref|YP_930146.1| - 0.01 16.1 0.9 0.63 10.3 0.1 3.0 2 2 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|119872139|ref|YP_930146.1| - 0.011 14.8 0.0 0.034 13.2 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|119872139|ref|YP_930146.1| - 0.013 15.3 0.0 0.045 13.5 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_23 PF13476.6 gi|119872139|ref|YP_930146.1| - 0.019 15.5 1.1 0.019 15.5 1.1 2.3 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|119872139|ref|YP_930146.1| - 0.022 14.5 0.5 0.26 11.0 0.1 2.7 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|119872139|ref|YP_930146.1| - 0.025 14.3 0.1 0.2 11.4 0.1 2.2 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119872139|ref|YP_930146.1| - 0.027 14.9 0.0 0.17 12.3 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.15 gi|119872139|ref|YP_930146.1| - 0.027 14.4 0.1 4.7 7.1 0.1 2.7 2 1 0 3 3 2 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|119872139|ref|YP_930146.1| - 0.028 14.8 0.0 2.1 8.8 0.0 2.6 2 0 0 2 2 2 0 RNA helicase RecA PF00154.21 gi|119872139|ref|YP_930146.1| - 0.029 13.9 0.1 0.25 10.8 0.0 2.1 2 0 0 2 2 2 0 recA bacterial DNA recombination protein NACHT PF05729.12 gi|119872139|ref|YP_930146.1| - 0.03 14.2 0.9 0.077 12.9 0.1 2.0 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|119872139|ref|YP_930146.1| - 0.033 14.4 0.3 1.1 9.4 0.0 3.0 4 0 0 4 4 3 0 AAA domain NB-ARC PF00931.22 gi|119872139|ref|YP_930146.1| - 0.036 13.2 0.3 1.3 8.2 0.0 2.3 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 gi|119872139|ref|YP_930146.1| - 0.068 13.1 0.3 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|119872139|ref|YP_930146.1| - 0.079 13.2 0.1 3 8.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain Band_7_1 PF13421.6 gi|119872139|ref|YP_930146.1| - 0.085 12.6 0.3 0.33 10.6 0.0 2.0 3 0 0 3 3 2 0 SPFH domain-Band 7 family AAA_18 PF13238.6 gi|119872139|ref|YP_930146.1| - 0.086 13.4 0.1 15 6.1 0.0 3.0 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|119872139|ref|YP_930146.1| - 0.091 12.1 0.8 6.8 5.9 0.0 3.4 4 0 0 4 4 4 0 DnaB-like helicase C terminal domain TsaE PF02367.17 gi|119872139|ref|YP_930146.1| - 0.11 12.5 1.7 0.63 10.1 0.0 2.9 4 0 0 4 4 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Roc PF08477.13 gi|119872139|ref|YP_930146.1| - 0.12 12.5 0.1 2.5 8.3 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_25 PF13481.6 gi|119872139|ref|YP_930146.1| - 0.26 10.8 1.2 2 7.9 0.0 2.7 3 0 0 3 3 3 0 AAA domain Fer4_4 PF12800.7 gi|119872139|ref|YP_930146.1| - 0.32 11.6 14.8 0.52 10.9 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119872139|ref|YP_930146.1| - 0.48 10.9 6.4 0.18 12.3 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872139|ref|YP_930146.1| - 1.5 9.4 9.8 0.59 10.7 2.3 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|119872139|ref|YP_930146.1| - 2 8.6 3.8 4.3 7.5 3.8 1.5 1 0 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|119872139|ref|YP_930146.1| - 4.6 8.4 17.8 4.6 8.4 4.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.15 gi|119872139|ref|YP_930146.1| - 8.5 6.2 7.5 2.5 8.0 0.3 3.1 4 0 0 4 4 3 0 NTPase 2_5_RNA_ligase2 PF13563.6 gi|119872140|ref|YP_930147.1| - 2.4e-09 37.3 0.2 2.7e-08 33.9 0.2 1.9 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily UPF0126 PF03458.13 gi|119872142|ref|YP_930149.1| - 2.7e-39 132.9 20.6 1.1e-22 79.7 2.5 2.4 3 0 0 3 3 3 2 UPF0126 domain PolyA_pol PF01743.20 gi|119872142|ref|YP_930149.1| - 0.18 12.3 0.5 6 7.3 0.0 2.2 2 0 0 2 2 2 0 Poly A polymerase head domain DUF2177 PF09945.9 gi|119872142|ref|YP_930149.1| - 2.2 8.4 8.4 10 6.2 0.3 3.0 1 1 2 3 3 3 0 Predicted membrane protein (DUF2177) DUF2458 PF10454.9 gi|119872144|ref|YP_930151.1| - 0.049 13.3 0.3 0.065 12.9 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) zinc_ribbon_5 PF13719.6 gi|119872146|ref|YP_930153.1| - 0.023 14.5 0.2 0.044 13.5 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119872146|ref|YP_930153.1| - 0.028 14.5 0.6 0.097 12.8 0.3 2.0 1 1 1 2 2 2 0 Zinc ribbon domain SEP PF08059.13 gi|119872146|ref|YP_930153.1| - 0.052 14.1 0.0 0.14 12.7 0.0 1.7 2 0 0 2 2 2 0 SEP domain zf-C2HC_2 PF13913.6 gi|119872146|ref|YP_930153.1| - 0.055 13.4 0.3 0.12 12.3 0.3 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Zn-C2H2_12 PF18112.1 gi|119872146|ref|YP_930153.1| - 0.087 13.3 0.5 0.22 12.0 0.5 1.7 1 0 0 1 1 1 0 Autophagy receptor zinc finger-C2H2 domain Asparaginase_C PF17763.1 gi|119872146|ref|YP_930153.1| - 0.14 12.4 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain Methyltransf_23 PF13489.6 gi|119872147|ref|YP_930154.1| - 0.0041 17.0 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872147|ref|YP_930154.1| - 0.046 14.5 0.0 0.14 12.9 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872148|ref|YP_930155.1| - 1.4e-10 41.7 0.0 2.3e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119872148|ref|YP_930155.1| - 3.2e-08 33.2 0.0 5.8e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|119872148|ref|YP_930155.1| - 1.4e-07 32.1 0.0 3.1e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872148|ref|YP_930155.1| - 0.0098 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872148|ref|YP_930155.1| - 0.012 15.4 0.0 0.039 13.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872148|ref|YP_930155.1| - 0.042 14.6 0.0 0.11 13.2 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|119872148|ref|YP_930155.1| - 0.082 12.0 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase DUF4405 PF14358.6 gi|119872149|ref|YP_930156.1| - 0.013 16.0 3.4 0.013 16.0 3.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) Nitroreductase PF00881.24 gi|119872150|ref|YP_930157.1| - 3.5e-33 115.0 0.0 4.2e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|119872150|ref|YP_930157.1| - 3.2e-08 33.4 0.0 0.00058 19.5 0.0 2.3 2 0 0 2 2 2 2 Putative TM nitroreductase Peptidase_M20 PF01546.28 gi|119872151|ref|YP_930158.1| - 2.6e-42 144.9 0.1 3.4e-42 144.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|119872151|ref|YP_930158.1| - 3.6e-20 71.9 0.0 6.2e-20 71.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain AMP-binding PF00501.28 gi|119872152|ref|YP_930159.1| - 3e-87 292.9 0.0 3.8e-87 292.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|119872152|ref|YP_930159.1| - 1.2e-23 83.9 0.3 3.8e-23 82.2 0.3 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ADH_N PF08240.12 gi|119872153|ref|YP_930160.1| - 3.4e-30 104.2 0.1 5.4e-30 103.5 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119872153|ref|YP_930160.1| - 6.2e-18 65.0 0.1 8.1e-17 61.4 0.1 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|119872153|ref|YP_930160.1| - 2.1e-14 54.7 0.0 7e-14 53.0 0.0 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|119872153|ref|YP_930160.1| - 0.00012 22.1 0.3 0.00026 21.1 0.3 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|119872153|ref|YP_930160.1| - 0.00028 20.3 0.2 0.00046 19.6 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|119872153|ref|YP_930160.1| - 0.0017 17.7 0.8 0.0029 16.9 0.8 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|119872153|ref|YP_930160.1| - 0.0019 17.9 0.1 0.0029 17.3 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|119872153|ref|YP_930160.1| - 0.013 14.7 0.9 0.016 14.5 0.8 1.4 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|119872153|ref|YP_930160.1| - 0.027 14.9 0.4 0.05 14.0 0.4 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding DUF1188 PF06690.11 gi|119872153|ref|YP_930160.1| - 0.033 13.7 0.1 0.046 13.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1188) ThiF PF00899.21 gi|119872153|ref|YP_930160.1| - 0.091 12.1 1.3 0.15 11.4 0.6 1.7 1 1 1 2 2 2 0 ThiF family Oxidored_nitro PF00148.19 gi|119872153|ref|YP_930160.1| - 0.11 11.2 0.2 0.29 9.8 0.1 1.6 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase FAD_binding_3 PF01494.19 gi|119872153|ref|YP_930160.1| - 0.11 11.7 0.5 0.16 11.2 0.5 1.2 1 0 0 1 1 1 0 FAD binding domain FMO-like PF00743.19 gi|119872153|ref|YP_930160.1| - 0.12 10.8 0.1 0.17 10.2 0.1 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like AdoHcyase_NAD PF00670.21 gi|119872153|ref|YP_930160.1| - 0.12 12.4 0.4 0.2 11.7 0.4 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PglD_N PF17836.1 gi|119872153|ref|YP_930160.1| - 0.13 13.0 0.5 0.28 11.9 0.5 1.7 1 1 0 1 1 1 0 PglD N-terminal domain Pyr_redox_3 PF13738.6 gi|119872153|ref|YP_930160.1| - 0.15 11.3 0.1 0.2 10.8 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 gi|119872153|ref|YP_930160.1| - 0.22 10.9 2.2 0.59 9.5 1.8 1.8 1 1 0 1 1 1 0 short chain dehydrogenase Pyr_redox PF00070.27 gi|119872153|ref|YP_930160.1| - 0.29 11.7 2.3 1 9.9 1.4 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase tRNA_deacylase PF04414.12 gi|119872154|ref|YP_930161.1| - 1.2e-40 139.3 0.0 1.6e-40 138.9 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase OrfB_Zn_ribbon PF07282.11 gi|119872158|ref|YP_930165.1| - 2e-09 37.3 0.2 4.2e-09 36.2 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119872158|ref|YP_930165.1| - 0.025 14.6 0.8 0.042 13.9 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|119872158|ref|YP_930165.1| - 0.036 13.7 8.2 0.068 12.9 8.2 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|119872158|ref|YP_930165.1| - 0.095 12.6 2.1 0.17 11.9 2.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 NRDD PF13597.6 gi|119872158|ref|YP_930165.1| - 0.1 11.4 0.1 0.18 10.6 0.1 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DUF2387 PF09526.10 gi|119872158|ref|YP_930165.1| - 0.18 12.0 0.7 0.43 10.8 0.7 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Auto_anti-p27 PF06677.12 gi|119872158|ref|YP_930165.1| - 0.29 11.3 5.6 0.51 10.5 5.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|119872158|ref|YP_930165.1| - 0.4 10.7 3.8 0.69 10.0 2.8 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|119872158|ref|YP_930165.1| - 1.2 8.9 6.6 3.9 7.3 6.6 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872158|ref|YP_930165.1| - 3.7 7.1 8.3 28 4.3 8.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119872158|ref|YP_930165.1| - 8.6 6.6 8.2 1.2e+02 2.9 8.2 2.3 1 1 0 1 1 1 0 Zinc ribbon domain ETF PF01012.21 gi|119872159|ref|YP_930166.1| - 1.4e-42 145.7 1.1 1.4e-42 145.7 0.2 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|119872159|ref|YP_930166.1| - 1.4e-32 111.5 2.2 3.1e-32 110.4 0.6 2.2 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|119872160|ref|YP_930167.1| - 2.3e-38 131.9 0.1 3.1e-38 131.5 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Lambda_CIII PF02061.16 gi|119872160|ref|YP_930167.1| - 0.047 13.7 0.6 0.2 11.7 0.0 2.3 2 0 0 2 2 2 0 Lambda Phage CIII ETF_QO PF05187.13 gi|119872161|ref|YP_930168.1| - 6.5e-08 32.7 4.0 8.4e-08 32.3 4.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|119872161|ref|YP_930168.1| - 2.7e-07 30.3 12.4 4.4e-05 23.3 3.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119872161|ref|YP_930168.1| - 3.2e-07 30.8 9.6 5.7e-05 23.6 1.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|119872161|ref|YP_930168.1| - 2.4e-06 27.6 8.7 3.1e-06 27.2 8.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119872161|ref|YP_930168.1| - 1.1e-05 25.1 3.6 1.1e-05 25.1 3.6 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119872161|ref|YP_930168.1| - 4.1e-05 24.4 8.0 0.0038 18.1 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|119872161|ref|YP_930168.1| - 9.5e-05 22.8 8.7 0.0029 18.0 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872161|ref|YP_930168.1| - 0.00016 21.7 17.0 0.00087 19.4 2.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119872161|ref|YP_930168.1| - 0.00022 21.3 16.6 0.00049 20.2 16.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872161|ref|YP_930168.1| - 0.0033 17.9 14.8 0.02 15.4 2.6 2.2 1 1 3 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872161|ref|YP_930168.1| - 0.0066 16.9 4.3 0.0066 16.9 4.3 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain NSP11 PF06471.12 gi|119872161|ref|YP_930168.1| - 0.0075 14.8 2.4 0.0084 14.6 2.4 1.0 1 0 0 1 1 1 1 NSP11 Fer4_6 PF12837.7 gi|119872161|ref|YP_930168.1| - 0.012 15.7 2.7 0.012 15.7 2.7 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872161|ref|YP_930168.1| - 0.043 13.9 15.2 0.13 12.4 15.3 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119872161|ref|YP_930168.1| - 0.12 13.4 6.0 0.12 13.4 6.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DAO PF01266.24 gi|119872162|ref|YP_930169.1| - 1.6e-17 64.1 1.2 1.1e-08 35.0 0.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|119872162|ref|YP_930169.1| - 9.3e-12 44.7 0.8 3.9e-09 36.1 0.1 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|119872162|ref|YP_930169.1| - 9.7e-12 44.8 0.7 6.9e-07 28.8 0.1 2.5 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|119872162|ref|YP_930169.1| - 1.1e-09 38.4 0.3 8.2e-09 35.6 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|119872162|ref|YP_930169.1| - 1e-08 34.8 0.3 1.3e-07 31.2 0.3 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|119872162|ref|YP_930169.1| - 1.8e-08 33.5 2.7 1.1e-07 31.0 0.4 2.3 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|119872162|ref|YP_930169.1| - 6e-08 32.2 3.4 3.3e-07 29.7 1.4 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|119872162|ref|YP_930169.1| - 6.8e-08 32.1 1.6 5.8e-06 25.8 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|119872162|ref|YP_930169.1| - 2.6e-07 30.3 1.8 4e-07 29.7 0.5 1.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|119872162|ref|YP_930169.1| - 1.4e-06 27.7 0.6 5.2e-06 25.8 0.6 1.8 1 1 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|119872162|ref|YP_930169.1| - 1.2e-05 24.3 1.8 0.004 16.1 0.0 2.2 1 1 1 2 2 2 2 Tryptophan halogenase Amino_oxidase PF01593.24 gi|119872162|ref|YP_930169.1| - 1.3e-05 24.7 0.6 0.00016 21.1 0.1 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|119872162|ref|YP_930169.1| - 3.4e-05 24.3 0.1 0.014 15.9 0.0 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119872162|ref|YP_930169.1| - 0.0002 20.6 0.7 0.00032 19.9 0.7 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|119872162|ref|YP_930169.1| - 0.00072 19.6 0.3 0.021 14.8 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding 3HCDH_N PF02737.18 gi|119872162|ref|YP_930169.1| - 0.013 15.4 0.3 0.029 14.3 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|119872162|ref|YP_930169.1| - 0.026 14.2 0.0 0.055 13.1 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|119872162|ref|YP_930169.1| - 0.12 12.8 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding MoaE PF02391.17 gi|119872163|ref|YP_930170.1| - 2.1e-24 85.9 0.0 3.1e-24 85.4 0.0 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|119872163|ref|YP_930170.1| - 5.1e-18 65.5 0.0 1.2e-17 64.3 0.0 1.7 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|119872163|ref|YP_930170.1| - 0.0012 18.6 0.0 0.0028 17.5 0.0 1.6 1 0 0 1 1 1 1 Mut7-C ubiquitin S4 PF01479.25 gi|119872163|ref|YP_930170.1| - 0.016 14.9 0.1 0.041 13.6 0.1 1.7 1 0 0 1 1 1 0 S4 domain TGS PF02824.21 gi|119872163|ref|YP_930170.1| - 0.049 13.7 0.1 0.71 10.0 0.0 2.4 2 0 0 2 2 2 0 TGS domain ThiS-like PF14453.6 gi|119872163|ref|YP_930170.1| - 0.064 13.3 0.1 0.29 11.2 0.0 2.1 2 0 0 2 2 2 0 ThiS-like ubiquitin LAL_C2 PF18603.1 gi|119872163|ref|YP_930170.1| - 0.2 11.8 0.7 1.5 9.0 0.7 2.2 1 1 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 Lambda_CIII PF02061.16 gi|119872164|ref|YP_930171.1| - 0.027 14.5 0.0 0.046 13.8 0.0 1.4 1 0 0 1 1 1 0 Lambda Phage CIII ATPase PF06745.13 gi|119872165|ref|YP_930172.1| - 4.2e-66 222.6 0.8 4.8e-66 222.4 0.8 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|119872165|ref|YP_930172.1| - 0.0013 18.3 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein GvpD PF07088.11 gi|119872165|ref|YP_930172.1| - 0.012 14.3 0.3 0.032 12.8 0.3 1.6 1 1 0 1 1 1 0 GvpD gas vesicle protein MEDS PF14417.6 gi|119872165|ref|YP_930172.1| - 0.027 14.3 0.0 0.058 13.2 0.0 1.5 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_25 PF13481.6 gi|119872165|ref|YP_930172.1| - 0.033 13.8 0.1 0.062 12.9 0.1 1.4 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.11 gi|119872165|ref|YP_930172.1| - 0.052 12.8 0.1 0.078 12.2 0.1 1.2 1 0 0 1 1 1 0 Rad51 Alkyl_sulf_dimr PF14863.6 gi|119872166|ref|YP_930173.1| - 0.067 13.7 0.0 0.095 13.2 0.0 1.2 1 0 0 1 1 1 0 Alkyl sulfatase dimerisation HTH_24 PF13412.6 gi|119872167|ref|YP_930174.1| - 1.4e-08 34.2 1.4 1.9e-08 33.7 1.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|119872167|ref|YP_930174.1| - 9.2e-08 32.0 0.0 1.2e-07 31.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|119872167|ref|YP_930174.1| - 2.9e-07 30.2 0.1 3.9e-07 29.8 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|119872167|ref|YP_930174.1| - 3.5e-06 26.8 0.2 4.4e-06 26.5 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|119872167|ref|YP_930174.1| - 3.5e-06 26.6 0.2 4.6e-06 26.3 0.2 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|119872167|ref|YP_930174.1| - 4.9e-06 26.6 0.0 6.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|119872167|ref|YP_930174.1| - 7.9e-06 25.7 1.0 2.1e-05 24.4 0.8 1.7 1 1 1 2 2 2 1 HTH domain MarR PF01047.22 gi|119872167|ref|YP_930174.1| - 9.6e-06 25.4 0.1 1.8e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|119872167|ref|YP_930174.1| - 3.6e-05 23.6 0.1 4.5e-05 23.2 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.12 gi|119872167|ref|YP_930174.1| - 4.5e-05 23.0 0.1 5.9e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|119872167|ref|YP_930174.1| - 7.8e-05 22.7 0.3 0.0001 22.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|119872167|ref|YP_930174.1| - 0.0001 22.3 0.0 0.00013 22.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|119872167|ref|YP_930174.1| - 0.00013 22.2 0.1 0.00021 21.6 0.1 1.3 1 1 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|119872167|ref|YP_930174.1| - 0.00016 21.4 0.1 0.00021 21.0 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|119872167|ref|YP_930174.1| - 0.00027 20.7 0.1 0.00034 20.4 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_29 PF13551.6 gi|119872167|ref|YP_930174.1| - 0.00046 20.1 0.1 0.00061 19.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix GntR PF00392.21 gi|119872167|ref|YP_930174.1| - 0.00063 19.3 0.3 0.00086 18.9 0.3 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family z-alpha PF02295.17 gi|119872167|ref|YP_930174.1| - 0.00085 19.3 0.1 0.0011 19.0 0.1 1.1 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain HTH_AsnC-type PF13404.6 gi|119872167|ref|YP_930174.1| - 0.00087 19.1 1.4 0.0017 18.1 1.4 1.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|119872167|ref|YP_930174.1| - 0.0015 18.6 0.4 0.0023 18.1 0.3 1.4 1 1 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin DUF977 PF06163.11 gi|119872167|ref|YP_930174.1| - 0.0021 18.0 0.1 0.0022 18.0 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) PheRS_DBD1 PF18552.1 gi|119872167|ref|YP_930174.1| - 0.0024 17.6 0.1 0.0039 16.9 0.1 1.5 1 1 0 1 1 1 1 PheRS DNA binding domain 1 HTH_27 PF13463.6 gi|119872167|ref|YP_930174.1| - 0.0052 17.2 0.1 0.0064 17.0 0.1 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain UPF0175 PF03683.13 gi|119872167|ref|YP_930174.1| - 0.0081 15.8 0.1 0.011 15.4 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) HTH_36 PF13730.6 gi|119872167|ref|YP_930174.1| - 0.0087 16.0 0.2 0.038 13.9 0.1 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain DUF1013 PF06242.11 gi|119872167|ref|YP_930174.1| - 0.012 15.7 0.0 0.014 15.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1013) Crp PF00325.20 gi|119872167|ref|YP_930174.1| - 0.013 15.1 0.2 0.023 14.3 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.16 gi|119872167|ref|YP_930174.1| - 0.015 14.8 0.3 0.02 14.4 0.3 1.2 1 0 0 1 1 1 0 Sigma-70, region 4 Replic_Relax PF13814.6 gi|119872167|ref|YP_930174.1| - 0.024 14.7 0.0 0.027 14.5 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_50 PF18024.1 gi|119872167|ref|YP_930174.1| - 0.04 13.5 0.1 0.059 13.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|119872167|ref|YP_930174.1| - 0.052 13.6 0.0 0.063 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|119872167|ref|YP_930174.1| - 0.059 12.3 0.0 0.07 12.1 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D F-112 PF09645.10 gi|119872167|ref|YP_930174.1| - 0.061 13.4 0.0 0.068 13.3 0.0 1.1 1 0 0 1 1 1 0 F-112 protein HTH_47 PF16221.5 gi|119872167|ref|YP_930174.1| - 0.071 12.7 0.1 0.087 12.4 0.1 1.2 1 0 0 1 1 1 0 winged helix-turn-helix HTH_10 PF04967.12 gi|119872167|ref|YP_930174.1| - 0.074 12.9 0.4 1.2 9.0 0.1 2.1 2 0 0 2 2 2 0 HTH DNA binding domain DUF134 PF02001.16 gi|119872167|ref|YP_930174.1| - 0.081 13.5 0.0 0.095 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF134 E3_UFM1_ligase PF09743.9 gi|119872167|ref|YP_930174.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.0 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 BLACT_WH PF17778.1 gi|119872167|ref|YP_930174.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain Penicillinase_R PF03965.16 gi|119872167|ref|YP_930174.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor Ribosomal_S7 PF00177.21 gi|119872169|ref|YP_930176.1| - 6.5e-46 155.7 0.1 8.1e-46 155.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e AMMECR1 PF01871.17 gi|119872169|ref|YP_930176.1| - 0.12 11.9 0.1 0.19 11.3 0.1 1.2 1 0 0 1 1 1 0 AMMECR1 Rep_fac_C PF08542.11 gi|119872170|ref|YP_930177.1| - 7.7e-19 67.9 0.1 2.2e-18 66.4 0.1 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|119872170|ref|YP_930177.1| - 3.4e-16 59.9 0.0 7.9e-16 58.7 0.0 1.6 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|119872170|ref|YP_930177.1| - 5.2e-16 58.8 0.0 5.4e-11 42.6 0.1 2.4 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|119872170|ref|YP_930177.1| - 1.2e-08 34.8 0.0 2.9e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|119872170|ref|YP_930177.1| - 1.7e-08 35.0 0.2 0.00037 20.9 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_14 PF13173.6 gi|119872170|ref|YP_930177.1| - 3.4e-07 30.4 0.1 7.5e-06 26.0 0.0 2.6 2 1 1 3 3 3 1 AAA domain AAA_assoc_2 PF16193.5 gi|119872170|ref|YP_930177.1| - 5.4e-07 29.8 0.2 1.7e-06 28.2 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|119872170|ref|YP_930177.1| - 2.1e-06 28.1 0.2 0.067 13.5 0.0 2.5 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|119872170|ref|YP_930177.1| - 1.3e-05 25.1 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|119872170|ref|YP_930177.1| - 1.7e-05 24.9 0.0 3.6e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|119872170|ref|YP_930177.1| - 8.7e-05 22.3 0.0 0.00022 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|119872170|ref|YP_930177.1| - 9.6e-05 22.9 0.0 0.00066 20.2 0.0 2.3 1 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|119872170|ref|YP_930177.1| - 0.00013 21.9 0.1 0.00062 19.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|119872170|ref|YP_930177.1| - 0.00018 21.1 0.0 0.00037 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|119872170|ref|YP_930177.1| - 0.00028 20.9 0.0 0.0042 17.1 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|119872170|ref|YP_930177.1| - 0.00034 20.1 0.0 0.0062 15.9 0.0 2.5 1 1 2 3 3 3 1 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|119872170|ref|YP_930177.1| - 0.00038 20.0 0.0 0.38 10.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DNA_pol3_delta PF06144.13 gi|119872170|ref|YP_930177.1| - 0.00043 20.1 0.0 0.0007 19.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_30 PF13604.6 gi|119872170|ref|YP_930177.1| - 0.00091 19.0 0.0 0.004 16.9 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|119872170|ref|YP_930177.1| - 0.0021 17.9 0.0 0.0081 16.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119872170|ref|YP_930177.1| - 0.0021 18.2 0.0 0.0042 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|119872170|ref|YP_930177.1| - 0.0035 16.6 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|119872170|ref|YP_930177.1| - 0.0042 17.4 0.0 0.0098 16.3 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_7 PF12775.7 gi|119872170|ref|YP_930177.1| - 0.0053 16.3 0.0 0.013 15.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|119872170|ref|YP_930177.1| - 0.0062 16.3 0.0 0.024 14.4 0.0 2.0 1 1 0 1 1 1 1 IstB-like ATP binding protein DEAD PF00270.29 gi|119872170|ref|YP_930177.1| - 0.0081 16.0 0.3 0.17 11.6 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase TniB PF05621.11 gi|119872170|ref|YP_930177.1| - 0.013 15.0 0.1 0.35 10.3 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|119872170|ref|YP_930177.1| - 0.013 15.8 0.0 0.1 12.9 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119872170|ref|YP_930177.1| - 0.017 15.4 0.2 0.057 13.7 0.0 2.1 3 0 0 3 3 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|119872170|ref|YP_930177.1| - 0.038 13.3 0.0 1.5 8.1 0.0 2.8 3 0 0 3 3 3 0 FtsK/SpoIIIE family ATPase_2 PF01637.18 gi|119872170|ref|YP_930177.1| - 0.043 13.7 0.0 0.094 12.6 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|119872170|ref|YP_930177.1| - 0.054 12.7 0.0 0.86 8.8 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|119872170|ref|YP_930177.1| - 0.056 13.2 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TIP49_C PF17856.1 gi|119872170|ref|YP_930177.1| - 0.059 13.5 0.2 0.16 12.1 0.2 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain ABC_tran PF00005.27 gi|119872170|ref|YP_930177.1| - 0.086 13.3 0.0 0.29 11.6 0.0 2.1 1 1 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|119872170|ref|YP_930177.1| - 0.19 10.8 0.0 0.43 9.6 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Imm1 PF14430.6 gi|119872170|ref|YP_930177.1| - 0.23 12.1 0.6 14 6.3 0.0 3.2 4 0 0 4 4 4 0 Immunity protein Imm1 AAA PF00004.29 gi|119872171|ref|YP_930178.1| - 5.2e-15 56.0 0.1 1e-13 51.8 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|119872171|ref|YP_930178.1| - 6e-07 30.0 0.2 7.7e-06 26.4 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|119872171|ref|YP_930178.1| - 7.3e-07 29.3 0.6 1e-05 25.5 0.3 2.8 2 1 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|119872171|ref|YP_930178.1| - 3.8e-06 26.7 0.1 5.5e-05 23.0 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|119872171|ref|YP_930178.1| - 8.5e-06 25.8 0.4 0.0002 21.4 0.1 2.7 1 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|119872171|ref|YP_930178.1| - 8.6e-06 26.1 0.0 0.00025 21.4 0.0 2.4 2 0 0 2 2 2 1 RNA helicase DNA_pol3_delta PF06144.13 gi|119872171|ref|YP_930178.1| - 6e-05 22.9 0.1 0.013 15.3 0.0 3.0 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA_14 PF13173.6 gi|119872171|ref|YP_930178.1| - 6.6e-05 23.0 0.0 0.00051 20.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|119872171|ref|YP_930178.1| - 8.4e-05 22.9 2.0 0.068 13.5 0.0 3.7 2 1 2 4 4 4 1 AAA domain AAA_2 PF07724.14 gi|119872171|ref|YP_930178.1| - 0.00012 22.2 0.0 0.00025 21.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|119872171|ref|YP_930178.1| - 0.00024 20.4 0.2 0.00054 19.3 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain Zeta_toxin PF06414.12 gi|119872171|ref|YP_930178.1| - 0.00031 20.1 0.0 0.00063 19.1 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|119872171|ref|YP_930178.1| - 0.00069 19.8 0.0 0.0014 18.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain RFC1 PF08519.12 gi|119872171|ref|YP_930178.1| - 0.00069 19.8 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain AAA_18 PF13238.6 gi|119872171|ref|YP_930178.1| - 0.00082 19.9 0.0 0.0033 18.0 0.0 2.2 2 1 0 2 2 1 1 AAA domain NTPase_1 PF03266.15 gi|119872171|ref|YP_930178.1| - 0.0011 18.9 0.1 0.0034 17.3 0.0 1.8 1 1 1 2 2 2 1 NTPase AAA_assoc_2 PF16193.5 gi|119872171|ref|YP_930178.1| - 0.0012 19.1 0.0 0.0037 17.6 0.0 1.9 1 0 0 1 1 1 1 AAA C-terminal domain NACHT PF05729.12 gi|119872171|ref|YP_930178.1| - 0.0019 18.1 0.0 0.042 13.8 0.0 2.7 3 0 0 3 3 2 1 NACHT domain AAA_7 PF12775.7 gi|119872171|ref|YP_930178.1| - 0.0031 17.1 0.0 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region DUF815 PF05673.13 gi|119872171|ref|YP_930178.1| - 0.0041 16.3 0.1 0.017 14.3 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_28 PF13521.6 gi|119872171|ref|YP_930178.1| - 0.0041 17.4 0.0 0.017 15.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|119872171|ref|YP_930178.1| - 0.0061 16.4 0.2 0.064 13.1 0.1 2.5 2 1 0 2 2 2 1 Bacterial dnaA protein TsaE PF02367.17 gi|119872171|ref|YP_930178.1| - 0.0084 16.1 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE IstB_IS21 PF01695.17 gi|119872171|ref|YP_930178.1| - 0.0084 15.9 0.0 0.031 14.0 0.0 2.0 2 0 0 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|119872171|ref|YP_930178.1| - 0.0088 16.6 0.1 0.031 14.8 0.0 1.9 2 0 0 2 2 1 1 ABC transporter AAA_25 PF13481.6 gi|119872171|ref|YP_930178.1| - 0.01 15.4 0.1 0.041 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|119872171|ref|YP_930178.1| - 0.011 15.6 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_17 PF13207.6 gi|119872171|ref|YP_930178.1| - 0.016 15.6 0.1 0.069 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|119872171|ref|YP_930178.1| - 0.019 15.3 0.0 0.046 14.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|119872171|ref|YP_930178.1| - 0.031 14.1 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|119872171|ref|YP_930178.1| - 0.033 14.0 0.0 0.058 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119872171|ref|YP_930178.1| - 0.057 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|119872171|ref|YP_930178.1| - 0.069 12.9 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119872171|ref|YP_930178.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|119872171|ref|YP_930178.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|119872171|ref|YP_930178.1| - 0.15 11.1 0.1 0.9 8.6 0.1 2.0 1 1 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|119872171|ref|YP_930178.1| - 0.16 11.1 0.1 0.89 8.7 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain DUF3195 PF11424.8 gi|119872172|ref|YP_930179.1| - 3.6e-23 81.4 3.9 4.2e-23 81.2 3.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Cdc6_C PF09079.11 gi|119872173|ref|YP_930180.1| - 3e-19 68.8 0.1 1.5e-18 66.6 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|119872173|ref|YP_930180.1| - 7.9e-10 39.1 0.0 2.5e-09 37.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119872173|ref|YP_930180.1| - 7.1e-07 29.8 0.4 6.4e-06 26.7 0.4 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119872173|ref|YP_930180.1| - 0.015 15.7 0.0 0.069 13.6 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TFIID-18kDa PF02269.16 gi|119872173|ref|YP_930180.1| - 0.036 14.1 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Transcription initiation factor IID, 18kD subunit PadR PF03551.14 gi|119872173|ref|YP_930180.1| - 0.079 12.9 0.3 0.93 9.5 0.1 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family TniB PF05621.11 gi|119872173|ref|YP_930180.1| - 0.081 12.3 0.0 0.24 10.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|119872173|ref|YP_930180.1| - 0.099 13.0 0.0 0.19 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|119872173|ref|YP_930180.1| - 0.13 12.4 0.0 2.4 8.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain HTH_20 PF12840.7 gi|119872174|ref|YP_930181.1| - 3.1e-09 36.8 0.0 4.6e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119872174|ref|YP_930181.1| - 2e-05 24.3 0.7 7.7e-05 22.5 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|119872174|ref|YP_930181.1| - 8.9e-05 22.3 0.2 0.00015 21.6 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|119872174|ref|YP_930181.1| - 0.00035 21.0 0.3 0.00078 19.9 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|119872174|ref|YP_930181.1| - 0.0011 19.0 0.6 0.0016 18.5 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|119872174|ref|YP_930181.1| - 0.0021 17.9 0.1 0.0028 17.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119872174|ref|YP_930181.1| - 0.006 16.1 0.2 0.011 15.2 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|119872174|ref|YP_930181.1| - 0.0089 16.2 0.1 0.013 15.6 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|119872174|ref|YP_930181.1| - 0.009 16.3 0.3 0.017 15.5 0.3 1.5 1 1 0 1 1 1 1 Transcriptional regulator HTH_45 PF14947.6 gi|119872174|ref|YP_930181.1| - 0.056 13.4 0.2 0.091 12.8 0.2 1.5 1 1 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|119872174|ref|YP_930181.1| - 0.067 13.1 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.6 gi|119872174|ref|YP_930181.1| - 0.068 13.2 0.3 0.093 12.8 0.3 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Mrr_cat PF04471.12 gi|119872175|ref|YP_930182.1| - 2.8e-05 24.1 0.0 4.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Restriction endonuclease NucS PF01939.16 gi|119872175|ref|YP_930182.1| - 4.4e-05 22.9 0.0 6.7e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|119872175|ref|YP_930182.1| - 0.0068 16.5 0.0 0.011 15.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) UPF0102 PF02021.17 gi|119872175|ref|YP_930182.1| - 0.014 15.7 0.0 0.024 14.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Piezo_RRas_bdg PF12166.8 gi|119872175|ref|YP_930182.1| - 0.17 11.2 0.1 0.2 10.9 0.1 1.1 1 0 0 1 1 1 0 Piezo non-specific cation channel, R-Ras-binding domain DUF1612 PF07756.12 gi|119872176|ref|YP_930183.1| - 0.024 14.9 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1612) T4_Gp59_C PF08994.10 gi|119872176|ref|YP_930183.1| - 0.048 14.3 0.0 0.099 13.3 0.0 1.4 2 0 0 2 2 2 0 T4 gene Gp59 loader of gp41 DNA helicase C-term IF-2B PF01008.17 gi|119872177|ref|YP_930184.1| - 2e-75 253.6 0.4 2.3e-75 253.4 0.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Protoglobin PF11563.8 gi|119872177|ref|YP_930184.1| - 0.052 13.5 0.1 0.086 12.7 0.1 1.3 1 0 0 1 1 1 0 Protoglobin DUF4883 PF16224.5 gi|119872178|ref|YP_930185.1| - 0.058 13.6 0.0 0.071 13.4 0.0 1.1 1 0 0 1 1 1 0 DOmain of unknown function (DUF4883) Methyltr_RsmB-F PF01189.17 gi|119872179|ref|YP_930186.1| - 1.3e-23 83.7 0.0 2.9e-23 82.6 0.0 1.6 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|119872179|ref|YP_930186.1| - 1.6e-15 56.8 2.2 2.8e-15 56.0 1.9 1.6 2 0 0 2 2 2 1 PUA domain Methyltr_RsmF_N PF17125.5 gi|119872179|ref|YP_930186.1| - 0.00043 20.7 0.0 0.04 14.4 0.0 2.3 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF UPF0113 PF03657.13 gi|119872179|ref|YP_930186.1| - 0.0016 18.6 0.2 0.0033 17.7 0.2 1.5 1 0 0 1 1 1 1 UPF0113 PUA domain Methyltransf_15 PF09445.10 gi|119872179|ref|YP_930186.1| - 0.01 15.4 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCNA_C PF02747.15 gi|119872181|ref|YP_930188.1| - 2.4e-08 34.2 0.3 3.7e-08 33.6 0.3 1.2 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|119872181|ref|YP_930188.1| - 1.4e-05 24.8 0.0 8.1e-05 22.3 0.0 2.0 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain DAD PF02109.16 gi|119872182|ref|YP_930189.1| - 0.03 14.6 0.1 0.058 13.7 0.1 1.5 1 0 0 1 1 1 0 DAD family Asp4 PF16996.5 gi|119872182|ref|YP_930189.1| - 0.033 14.0 0.5 0.033 14.0 0.5 1.7 2 0 0 2 2 2 0 Accessory secretory protein Sec Asp4 Sdh_cyt PF01127.22 gi|119872182|ref|YP_930189.1| - 0.16 12.0 5.3 0.39 10.8 5.3 1.6 1 1 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|119872183|ref|YP_930190.1| - 1.4e-05 25.1 4.2 2.8e-05 24.2 4.1 1.6 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4405 PF14358.6 gi|119872183|ref|YP_930190.1| - 0.025 15.1 1.4 0.025 15.1 1.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF4282 PF14110.6 gi|119872183|ref|YP_930190.1| - 8.9 7.1 10.3 7.9 7.3 4.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) Fer2_3 PF13085.6 gi|119872184|ref|YP_930191.1| - 6e-34 116.3 0.0 1.1e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|119872184|ref|YP_930191.1| - 2.2e-12 47.2 1.3 2.2e-12 47.2 1.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872184|ref|YP_930191.1| - 3.6e-10 39.8 1.7 3.6e-10 39.8 1.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872184|ref|YP_930191.1| - 3.9e-07 30.5 1.1 3.9e-07 30.5 1.1 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872184|ref|YP_930191.1| - 9.2e-07 29.7 3.7 1.4e-06 29.2 1.4 2.2 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119872184|ref|YP_930191.1| - 3.2e-06 27.2 2.4 3.2e-06 27.2 2.4 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119872184|ref|YP_930191.1| - 1.8e-05 24.3 2.7 1.8e-05 24.3 2.7 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119872184|ref|YP_930191.1| - 4.5e-05 24.0 11.0 5.6e-05 23.7 6.1 2.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|119872184|ref|YP_930191.1| - 8.8e-05 22.4 0.3 8.8e-05 22.4 0.3 2.2 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|119872184|ref|YP_930191.1| - 0.0015 18.7 3.3 0.17 12.1 0.2 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872184|ref|YP_930191.1| - 0.0016 18.8 0.6 0.0016 18.8 0.6 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119872184|ref|YP_930191.1| - 0.0036 17.3 1.5 0.0036 17.3 1.5 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119872184|ref|YP_930191.1| - 0.0049 16.9 3.7 0.0049 16.9 3.7 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119872184|ref|YP_930191.1| - 0.092 13.7 6.3 0.092 13.7 6.3 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872184|ref|YP_930191.1| - 0.22 11.7 14.5 0.17 12.0 8.8 2.7 2 2 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119872184|ref|YP_930191.1| - 4.4 8.2 7.5 3.6 8.5 4.2 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.24 gi|119872185|ref|YP_930192.1| - 3e-112 375.7 0.5 3.6e-112 375.5 0.5 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|119872185|ref|YP_930192.1| - 2.3e-36 124.6 0.0 3.8e-36 123.9 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|119872185|ref|YP_930192.1| - 0.00088 18.6 0.9 0.0037 16.5 0.3 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119872185|ref|YP_930192.1| - 0.0022 17.6 0.6 0.0046 16.6 0.5 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|119872185|ref|YP_930192.1| - 0.0098 15.2 0.3 0.55 9.4 0.3 2.8 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.7 gi|119872185|ref|YP_930192.1| - 0.064 12.6 2.1 2.8 7.2 1.9 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|119872185|ref|YP_930192.1| - 0.11 11.5 1.8 4.6 6.2 1.3 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NUDIX PF00293.28 gi|119872187|ref|YP_930194.1| - 3e-14 53.2 0.9 3.6e-14 52.9 0.9 1.1 1 0 0 1 1 1 1 NUDIX domain LPD22 PF18834.1 gi|119872187|ref|YP_930194.1| - 0.15 12.3 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 Peptidase_S8 PF00082.22 gi|119872188|ref|YP_930195.1| - 2.7e-29 102.4 0.0 6.1e-29 101.2 0.0 1.6 1 1 0 1 1 1 1 Subtilase family PTH2 PF01981.16 gi|119872189|ref|YP_930196.1| - 1.4e-40 138.2 0.0 1.6e-40 138.0 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 MscL PF01741.18 gi|119872190|ref|YP_930197.1| - 0.012 15.9 0.7 0.012 15.9 0.7 1.2 1 0 0 1 1 1 0 Large-conductance mechanosensitive channel, MscL DUF5337 PF17272.2 gi|119872190|ref|YP_930197.1| - 0.012 15.4 0.4 0.014 15.2 0.4 1.2 1 1 0 1 1 1 0 Family of unknown function (DUF5337) Radical_SAM PF04055.21 gi|119872191|ref|YP_930198.1| - 2.3e-16 60.6 0.0 7.5e-16 59.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|119872191|ref|YP_930198.1| - 0.0014 18.8 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif KH_5 PF13184.6 gi|119872192|ref|YP_930199.1| - 0.097 12.8 0.3 15 5.7 0.1 2.5 2 0 0 2 2 2 0 NusA-like KH domain tRNA-synt_2 PF00152.20 gi|119872193|ref|YP_930200.1| - 3.1e-80 269.6 0.1 3.7e-80 269.3 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|119872193|ref|YP_930200.1| - 5.1e-13 48.8 1.7 8.5e-13 48.1 1.7 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|119872193|ref|YP_930200.1| - 0.012 15.1 0.1 2.9 7.3 0.1 2.3 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) PCMT PF01135.19 gi|119872194|ref|YP_930201.1| - 7e-69 231.8 0.1 8.2e-69 231.5 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|119872194|ref|YP_930201.1| - 2.1e-09 37.3 0.0 2.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|119872194|ref|YP_930201.1| - 8.7e-09 34.9 0.0 1.1e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.10 gi|119872194|ref|YP_930201.1| - 9.9e-07 28.7 0.0 1.2e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_25 PF13649.6 gi|119872194|ref|YP_930201.1| - 1.1e-06 29.2 0.0 2.2e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|119872194|ref|YP_930201.1| - 1.1e-05 26.3 0.0 2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119872194|ref|YP_930201.1| - 1.3e-05 24.7 0.0 2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|119872194|ref|YP_930201.1| - 3e-05 24.6 0.0 8.5e-05 23.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.20 gi|119872194|ref|YP_930201.1| - 0.00069 19.0 0.0 0.00092 18.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|119872194|ref|YP_930201.1| - 0.00077 19.2 0.0 0.0028 17.3 0.0 1.7 1 1 1 2 2 2 1 16S rRNA methyltransferase RsmB/F Methyltransf_18 PF12847.7 gi|119872194|ref|YP_930201.1| - 0.0025 17.7 0.0 0.0033 17.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|119872194|ref|YP_930201.1| - 0.0085 15.2 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Fibrillarin Methyltransf_32 PF13679.6 gi|119872194|ref|YP_930201.1| - 0.012 15.6 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|119872194|ref|YP_930201.1| - 0.037 13.8 0.0 0.052 13.3 0.0 1.3 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|119872194|ref|YP_930201.1| - 0.039 13.8 0.0 0.07 13.0 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|119872194|ref|YP_930201.1| - 0.042 13.4 0.0 0.066 12.8 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase small domain SEF14_adhesin PF06443.11 gi|119872194|ref|YP_930201.1| - 0.085 12.7 0.0 0.17 11.7 0.0 1.5 2 0 0 2 2 2 0 SEF14-like adhesin RrnaAD PF00398.20 gi|119872194|ref|YP_930201.1| - 0.19 10.7 0.0 0.28 10.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase XPG_I PF00867.18 gi|119872195|ref|YP_930202.1| - 1.8e-27 95.5 0.0 5.2e-27 94.0 0.0 1.8 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|119872195|ref|YP_930202.1| - 1e-23 83.7 0.0 2.5e-23 82.5 0.0 1.7 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|119872195|ref|YP_930202.1| - 8e-06 26.4 0.3 3e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold RTX_C PF08339.10 gi|119872196|ref|YP_930203.1| - 0.043 13.9 0.4 0.045 13.8 0.4 1.1 1 0 0 1 1 1 0 RTX C-terminal domain HTH_34 PF13601.6 gi|119872196|ref|YP_930203.1| - 0.044 14.0 0.7 0.064 13.4 0.7 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain AAA PF00004.29 gi|119872197|ref|YP_930204.1| - 1.7e-100 332.6 0.0 2.7e-50 170.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|119872197|ref|YP_930204.1| - 7.1e-37 125.0 2.7 8.4e-19 67.1 0.3 2.8 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|119872197|ref|YP_930204.1| - 5e-28 97.1 0.8 7.1e-27 93.4 2.3 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|119872197|ref|YP_930204.1| - 4.5e-16 59.0 0.0 2.2e-07 30.7 0.0 2.8 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|119872197|ref|YP_930204.1| - 9.3e-14 51.9 0.8 0.00045 20.5 0.0 4.7 2 2 2 4 4 4 2 AAA domain CDC48_2 PF02933.17 gi|119872197|ref|YP_930204.1| - 9.8e-14 50.9 0.7 9.8e-14 50.9 0.7 1.8 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 TIP49 PF06068.13 gi|119872197|ref|YP_930204.1| - 4.1e-13 49.3 2.5 7.7e-06 25.3 0.0 3.6 3 1 1 4 4 4 2 TIP49 P-loop domain AAA_2 PF07724.14 gi|119872197|ref|YP_930204.1| - 9.7e-13 48.6 0.0 1.5e-07 31.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|119872197|ref|YP_930204.1| - 1.1e-12 48.2 0.8 3.4e-05 23.9 0.1 3.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|119872197|ref|YP_930204.1| - 1.2e-12 48.6 1.6 1.2e-05 25.8 0.0 4.0 3 2 0 3 3 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|119872197|ref|YP_930204.1| - 7.4e-11 42.4 0.0 8.2e-05 22.8 0.0 2.8 2 0 0 2 2 2 2 AAA domain UFD1 PF03152.14 gi|119872197|ref|YP_930204.1| - 1.7e-10 40.6 0.3 3.8e-10 39.5 0.1 1.7 2 0 0 2 2 1 1 Ubiquitin fusion degradation protein UFD1 AAA_14 PF13173.6 gi|119872197|ref|YP_930204.1| - 6e-10 39.3 0.0 6.5e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|119872197|ref|YP_930204.1| - 1.5e-09 37.7 0.3 4.2e-05 23.5 0.0 3.1 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain IstB_IS21 PF01695.17 gi|119872197|ref|YP_930204.1| - 2.8e-09 36.9 0.0 0.0032 17.2 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|119872197|ref|YP_930204.1| - 1.1e-08 35.4 0.0 0.0018 18.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|119872197|ref|YP_930204.1| - 2.4e-08 34.6 0.0 0.0061 17.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|119872197|ref|YP_930204.1| - 4.5e-07 29.5 1.0 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|119872197|ref|YP_930204.1| - 9.1e-07 28.8 0.0 0.038 13.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|119872197|ref|YP_930204.1| - 2.8e-06 27.1 0.1 0.092 12.5 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|119872197|ref|YP_930204.1| - 1e-05 24.9 0.4 0.18 11.1 0.0 2.8 3 0 0 3 3 2 2 Zeta toxin DUF815 PF05673.13 gi|119872197|ref|YP_930204.1| - 1.2e-05 24.6 0.0 0.098 11.8 0.0 2.7 2 1 0 2 2 2 2 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|119872197|ref|YP_930204.1| - 1.3e-05 25.6 0.0 0.25 11.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase ATPase PF06745.13 gi|119872197|ref|YP_930204.1| - 1.3e-05 24.7 1.4 0.19 11.0 0.0 3.5 2 1 1 3 3 3 2 KaiC AAA_7 PF12775.7 gi|119872197|ref|YP_930204.1| - 1.6e-05 24.5 0.1 0.12 11.8 0.0 2.9 2 1 0 2 2 2 2 P-loop containing dynein motor region PhoH PF02562.16 gi|119872197|ref|YP_930204.1| - 1.9e-05 24.2 1.2 0.2 11.1 0.0 2.8 2 0 0 2 2 2 2 PhoH-like protein TsaE PF02367.17 gi|119872197|ref|YP_930204.1| - 2.1e-05 24.5 0.1 0.34 10.9 0.1 2.7 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|119872197|ref|YP_930204.1| - 0.00012 22.6 0.0 0.41 11.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|119872197|ref|YP_930204.1| - 0.00039 20.4 0.6 1.1 9.1 0.0 3.4 4 0 0 4 4 3 1 NACHT domain AAA_3 PF07726.11 gi|119872197|ref|YP_930204.1| - 0.00046 20.1 0.0 0.98 9.3 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|119872197|ref|YP_930204.1| - 0.00093 19.3 0.0 2 8.5 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain Parvo_NS1 PF01057.17 gi|119872197|ref|YP_930204.1| - 0.00096 18.3 0.2 1 8.4 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|119872197|ref|YP_930204.1| - 0.00096 18.9 1.0 0.84 9.3 0.0 3.2 3 0 0 3 3 2 1 AAA domain DUF2075 PF09848.9 gi|119872197|ref|YP_930204.1| - 0.0018 17.6 0.0 0.67 9.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|119872197|ref|YP_930204.1| - 0.0024 17.7 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|119872197|ref|YP_930204.1| - 0.0025 17.8 0.5 1.7 8.5 0.1 3.7 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|119872197|ref|YP_930204.1| - 0.0032 17.8 4.1 1.2 9.5 0.2 3.5 3 1 1 4 4 3 1 AAA domain PduV-EutP PF10662.9 gi|119872197|ref|YP_930204.1| - 0.0033 17.2 0.0 0.88 9.3 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Bac_DnaA PF00308.18 gi|119872197|ref|YP_930204.1| - 0.0039 17.1 0.0 1.1 9.0 0.0 3.2 2 2 0 2 2 2 1 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|119872197|ref|YP_930204.1| - 0.0042 16.8 0.3 16 5.1 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase AAA_17 PF13207.6 gi|119872197|ref|YP_930204.1| - 0.0047 17.4 0.0 4.6 7.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|119872197|ref|YP_930204.1| - 0.0065 16.1 10.5 2.6 7.6 1.7 4.1 2 2 1 3 3 3 1 AAA domain T2SSE PF00437.20 gi|119872197|ref|YP_930204.1| - 0.0076 15.3 0.0 2.6 7.0 0.0 2.8 2 0 0 2 2 2 1 Type II/IV secretion system protein Viral_helicase1 PF01443.18 gi|119872197|ref|YP_930204.1| - 0.009 15.8 0.0 0.38 10.4 0.0 2.2 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.22 gi|119872197|ref|YP_930204.1| - 0.016 14.4 0.0 3.4 6.8 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain TniB PF05621.11 gi|119872197|ref|YP_930204.1| - 0.016 14.6 0.1 5.5 6.3 0.0 3.5 3 1 1 4 4 3 0 Bacterial TniB protein Rad17 PF03215.15 gi|119872197|ref|YP_930204.1| - 0.033 14.1 0.1 17 5.3 0.0 2.9 2 2 0 2 2 2 0 Rad17 P-loop domain ResIII PF04851.15 gi|119872197|ref|YP_930204.1| - 0.034 14.1 0.0 8.9 6.3 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit ATP-synt_ab PF00006.25 gi|119872197|ref|YP_930204.1| - 0.034 13.8 0.0 10 5.7 0.0 2.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.6 gi|119872197|ref|YP_930204.1| - 0.035 13.9 0.1 8.1 6.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 gi|119872197|ref|YP_930204.1| - 0.04 13.6 0.1 11 5.7 0.0 2.7 3 0 0 3 3 2 0 Cytidylate kinase Molydop_binding PF01568.21 gi|119872197|ref|YP_930204.1| - 0.052 13.6 0.5 0.51 10.4 0.6 2.7 3 1 0 3 3 1 0 Molydopterin dinucleotide binding domain MCM PF00493.23 gi|119872197|ref|YP_930204.1| - 0.055 12.6 0.0 12 4.9 0.0 2.5 2 0 0 2 2 2 0 MCM P-loop domain NTPase_1 PF03266.15 gi|119872197|ref|YP_930204.1| - 0.079 12.9 7.2 7.7 6.4 0.0 4.9 4 2 2 6 6 5 0 NTPase cobW PF02492.19 gi|119872197|ref|YP_930204.1| - 0.08 12.5 0.1 13 5.3 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IPT PF01745.16 gi|119872197|ref|YP_930204.1| - 0.095 12.1 0.5 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase SKI PF01202.22 gi|119872197|ref|YP_930204.1| - 0.15 12.2 0.0 22 5.1 0.0 2.7 2 0 0 2 2 2 0 Shikimate kinase SRPRB PF09439.10 gi|119872197|ref|YP_930204.1| - 0.16 11.4 0.0 13 5.2 0.0 2.4 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|119872197|ref|YP_930204.1| - 0.2 11.9 0.0 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase EF1_GNE PF00736.19 gi|119872198|ref|YP_930205.1| - 4.8e-16 58.7 0.0 5.3e-16 58.6 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain YcgL PF05166.13 gi|119872198|ref|YP_930205.1| - 0.026 14.9 0.0 0.037 14.4 0.0 1.2 1 0 0 1 1 1 0 YcgL domain DUF1610 PF07754.11 gi|119872199|ref|YP_930206.1| - 1.8e-14 53.4 2.6 7.9e-12 44.9 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-RING_7 PF02591.15 gi|119872199|ref|YP_930206.1| - 8.3e-05 22.7 0.7 0.18 12.0 0.1 2.2 2 0 0 2 2 2 2 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119872199|ref|YP_930206.1| - 0.00068 18.9 2.0 0.27 10.7 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119872199|ref|YP_930206.1| - 0.0007 19.0 2.1 0.11 12.1 0.0 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|119872199|ref|YP_930206.1| - 0.0013 18.6 1.0 0.002 18.0 1.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|119872199|ref|YP_930206.1| - 0.002 17.8 0.3 1.2 8.9 0.1 2.1 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein zf-H2C2_2 PF13465.6 gi|119872199|ref|YP_930206.1| - 0.0021 18.4 2.4 1.1 9.9 0.4 2.3 2 1 0 2 2 2 2 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|119872199|ref|YP_930206.1| - 0.0021 17.7 2.6 0.38 10.6 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|119872199|ref|YP_930206.1| - 0.005 16.8 0.2 0.0075 16.3 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|119872199|ref|YP_930206.1| - 0.0052 16.7 2.3 0.009 15.9 2.3 1.4 1 1 0 1 1 1 1 SprT-like zinc ribbon domain zf-ISL3 PF14690.6 gi|119872199|ref|YP_930206.1| - 0.0053 17.4 1.7 0.42 11.3 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-Mss51 PF13824.6 gi|119872199|ref|YP_930206.1| - 0.0057 16.7 2.6 0.59 10.3 2.6 2.1 1 1 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|119872199|ref|YP_930206.1| - 0.01 15.9 2.5 0.026 14.7 2.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|119872199|ref|YP_930206.1| - 0.012 15.3 2.2 0.85 9.4 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|119872199|ref|YP_930206.1| - 0.019 15.0 4.5 0.048 13.6 4.5 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|119872199|ref|YP_930206.1| - 0.019 15.4 2.5 4.6 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.6 gi|119872199|ref|YP_930206.1| - 0.023 14.4 0.4 0.036 13.8 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|119872199|ref|YP_930206.1| - 0.024 14.3 1.0 0.024 14.3 1.0 1.5 2 0 0 2 2 1 0 InsA N-terminal domain zf-AN1 PF01428.16 gi|119872199|ref|YP_930206.1| - 0.028 14.6 0.4 6.7 7.0 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger Sgf11 PF08209.11 gi|119872199|ref|YP_930206.1| - 0.032 13.8 1.2 0.41 10.2 0.0 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HypA PF01155.19 gi|119872199|ref|YP_930206.1| - 0.033 14.2 0.0 0.038 14.0 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|119872199|ref|YP_930206.1| - 0.037 13.9 1.0 7.9 6.5 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|119872199|ref|YP_930206.1| - 0.039 13.9 0.5 2.9 7.9 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.12 gi|119872199|ref|YP_930206.1| - 0.044 13.8 4.6 0.41 10.7 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TFIIS_C PF01096.18 gi|119872199|ref|YP_930206.1| - 0.051 13.4 0.9 3.7 7.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) PADR1 PF08063.12 gi|119872199|ref|YP_930206.1| - 0.055 13.3 2.7 2.7 7.8 0.1 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain zinc_ribbon_9 PF14369.6 gi|119872199|ref|YP_930206.1| - 0.059 13.6 0.4 3.7 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon C1_2 PF03107.16 gi|119872199|ref|YP_930206.1| - 0.074 13.4 0.1 0.12 12.8 0.1 1.3 1 0 0 1 1 1 0 C1 domain A2L_zn_ribbon PF08792.10 gi|119872199|ref|YP_930206.1| - 0.076 12.8 0.8 3.4 7.5 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|119872199|ref|YP_930206.1| - 0.093 12.3 1.9 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger MCM_OB PF17207.3 gi|119872199|ref|YP_930206.1| - 0.12 12.3 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 MCM OB domain DUF3268 PF11672.8 gi|119872199|ref|YP_930206.1| - 0.12 12.7 0.2 0.16 12.3 0.2 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain tRNA-synt_1f PF01921.18 gi|119872199|ref|YP_930206.1| - 0.14 11.1 0.0 0.15 10.9 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (K) zf-C4_Topoisom PF01396.19 gi|119872199|ref|YP_930206.1| - 0.15 11.9 3.6 2.5 7.9 0.1 2.5 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger DUF2614 PF11023.8 gi|119872199|ref|YP_930206.1| - 0.17 11.9 0.7 0.58 10.3 0.1 1.8 1 1 1 2 2 2 0 Zinc-ribbon containing domain OrfB_Zn_ribbon PF07282.11 gi|119872199|ref|YP_930206.1| - 0.18 11.8 1.5 0.38 10.7 1.5 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain CpXC PF14353.6 gi|119872199|ref|YP_930206.1| - 0.18 11.9 0.7 4.9 7.2 0.0 2.1 2 0 0 2 2 2 0 CpXC protein zf-C2H2_3 PF13878.6 gi|119872199|ref|YP_930206.1| - 0.19 11.6 0.3 3.3 7.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_RNApol_7kD PF03604.13 gi|119872199|ref|YP_930206.1| - 0.26 11.0 3.8 4.6 7.0 3.5 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Anti-TRAP PF15777.5 gi|119872199|ref|YP_930206.1| - 0.32 11.0 2.4 1.1 9.3 2.3 1.7 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein NOB1_Zn_bind PF08772.11 gi|119872199|ref|YP_930206.1| - 0.59 10.3 3.4 1.2 9.4 0.1 2.6 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf_C2H2_10 PF18414.1 gi|119872199|ref|YP_930206.1| - 0.61 9.7 4.8 2.4 7.7 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger DNA_ligase_ZBD PF03119.16 gi|119872199|ref|YP_930206.1| - 0.67 10.0 5.3 0.58 10.2 1.3 2.2 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.9 gi|119872199|ref|YP_930206.1| - 0.84 9.8 6.9 1.2 9.3 1.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|119872199|ref|YP_930206.1| - 0.85 10.1 5.0 6 7.4 0.1 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C2H2_4 PF13894.6 gi|119872199|ref|YP_930206.1| - 1.3 10.0 3.3 36 5.6 0.3 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF3797 PF12677.7 gi|119872199|ref|YP_930206.1| - 2.7 8.0 6.0 3.4 7.6 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-tcix PF14952.6 gi|119872199|ref|YP_930206.1| - 3.2 7.4 8.3 6 6.6 1.2 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Endonuclease_5 PF04493.14 gi|119872200|ref|YP_930207.1| - 1.4e-49 168.5 0.3 1.8e-49 168.1 0.3 1.1 1 0 0 1 1 1 1 Endonuclease V DUF357 PF04010.13 gi|119872201|ref|YP_930208.1| - 3.4e-17 62.3 2.8 5.7e-17 61.6 2.8 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|119872201|ref|YP_930208.1| - 1.8e-10 41.2 0.1 4.6e-10 39.9 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like DUF4500 PF14937.6 gi|119872201|ref|YP_930208.1| - 0.04 13.9 1.0 0.062 13.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4500) PHD_like PF12910.7 gi|119872201|ref|YP_930208.1| - 0.054 13.5 0.4 0.12 12.3 0.4 1.6 1 0 0 1 1 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system RPN7 PF10602.9 gi|119872201|ref|YP_930208.1| - 0.071 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 26S proteasome subunit RPN7 UPF0179 PF03684.13 gi|119872202|ref|YP_930209.1| - 8.7e-29 100.2 1.0 1e-28 100.0 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) Ral PF11058.8 gi|119872202|ref|YP_930209.1| - 0.077 12.6 5.1 2.5 7.7 0.7 2.7 3 0 0 3 3 3 0 Antirestriction protein Ral Gly_reductase PF09338.11 gi|119872202|ref|YP_930209.1| - 0.081 11.3 1.7 0.71 8.2 0.1 2.0 1 1 1 2 2 2 0 Glycine/sarcosine/betaine reductase component B subunits RIO1 PF01163.22 gi|119872203|ref|YP_930210.1| - 2.1e-39 135.1 0.0 3.2e-39 134.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|119872203|ref|YP_930210.1| - 1.2e-24 86.3 0.2 2.7e-24 85.2 0.2 1.6 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|119872203|ref|YP_930210.1| - 1.1e-06 28.7 0.2 0.0021 18.0 0.0 3.1 2 1 1 3 3 3 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|119872203|ref|YP_930210.1| - 0.0063 15.9 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain ABC1 PF03109.16 gi|119872203|ref|YP_930210.1| - 0.071 13.3 0.0 0.28 11.3 0.0 2.0 2 0 0 2 2 2 0 ABC1 family DUF2250 PF10007.9 gi|119872203|ref|YP_930210.1| - 0.088 12.9 0.1 0.25 11.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF460 PF04312.13 gi|119872204|ref|YP_930211.1| - 1e-39 135.5 0.0 2.4e-39 134.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) GAS PF13851.6 gi|119872204|ref|YP_930211.1| - 6.1e-05 22.5 7.7 6.1e-05 22.5 7.7 2.2 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.21 gi|119872204|ref|YP_930211.1| - 0.00015 21.7 10.8 0.001 19.1 3.4 2.8 2 0 0 2 2 2 1 bZIP transcription factor UPF0242 PF06785.11 gi|119872204|ref|YP_930211.1| - 0.0029 17.7 11.9 0.0069 16.5 11.9 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|119872204|ref|YP_930211.1| - 0.006 16.6 11.8 0.006 16.6 11.8 1.9 2 0 0 2 2 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ADIP PF11559.8 gi|119872204|ref|YP_930211.1| - 0.014 15.5 5.8 0.038 14.1 5.8 1.7 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Lectin_N PF03954.14 gi|119872204|ref|YP_930211.1| - 0.025 14.3 2.5 0.034 13.9 1.4 1.7 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain Cep57_MT_bd PF06657.13 gi|119872204|ref|YP_930211.1| - 0.053 14.0 10.0 0.39 11.2 10.0 2.5 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DUF2884 PF11101.8 gi|119872204|ref|YP_930211.1| - 0.054 13.0 1.3 0.32 10.5 0.4 2.4 3 0 0 3 3 2 0 Protein of unknown function (DUF2884) TMF_DNA_bd PF12329.8 gi|119872204|ref|YP_930211.1| - 0.38 10.8 12.5 1.8 8.6 5.4 3.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding ZapB PF06005.12 gi|119872204|ref|YP_930211.1| - 0.57 10.7 13.6 4.3 7.9 7.5 2.9 2 0 0 2 2 2 0 Cell division protein ZapB CENP-H PF05837.12 gi|119872204|ref|YP_930211.1| - 0.99 9.8 8.6 0.66 10.4 5.8 2.1 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Mst1_SARAH PF11629.8 gi|119872204|ref|YP_930211.1| - 1.1 9.4 9.8 1.1 9.4 0.7 3.0 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 bZIP_2 PF07716.15 gi|119872204|ref|YP_930211.1| - 1.3 9.1 16.7 0.12 12.5 6.5 2.9 2 0 0 2 2 2 0 Basic region leucine zipper BST2 PF16716.5 gi|119872204|ref|YP_930211.1| - 1.6 9.4 8.8 4.4 8.0 8.8 1.7 1 0 0 1 1 1 0 Bone marrow stromal antigen 2 DUF4407 PF14362.6 gi|119872204|ref|YP_930211.1| - 1.7 7.9 10.7 3 7.1 7.0 2.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) Spc24 PF08286.11 gi|119872204|ref|YP_930211.1| - 2 8.7 10.7 4.8 7.5 2.9 3.0 2 1 1 3 3 2 0 Spc24 subunit of Ndc80 CorA PF01544.18 gi|119872204|ref|YP_930211.1| - 2.5 7.3 5.1 2.7 7.2 3.4 1.9 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein YabA PF06156.13 gi|119872204|ref|YP_930211.1| - 2.8 8.6 9.0 5.3 7.7 2.5 2.9 1 1 1 2 2 2 0 Initiation control protein YabA JIP_LZII PF16471.5 gi|119872204|ref|YP_930211.1| - 3 8.1 10.7 2.7 8.3 2.0 3.4 3 0 0 3 3 3 0 JNK-interacting protein leucine zipper II DivIC PF04977.15 gi|119872204|ref|YP_930211.1| - 3.3 7.5 13.3 2.8 7.8 5.8 3.5 3 0 0 3 3 3 0 Septum formation initiator Csm1_N PF18504.1 gi|119872204|ref|YP_930211.1| - 3.3 8.1 8.9 1.7 9.1 3.4 2.9 1 1 1 2 2 2 0 Csm1 N-terminal domain KASH_CCD PF14662.6 gi|119872204|ref|YP_930211.1| - 3.5 7.4 17.6 4.1 7.2 1.1 2.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH FlaC_arch PF05377.11 gi|119872204|ref|YP_930211.1| - 3.8 8.0 11.2 0.83 10.1 0.3 3.6 4 0 0 4 4 2 0 Flagella accessory protein C (FlaC) FapA PF03961.13 gi|119872204|ref|YP_930211.1| - 4.6 5.7 15.2 3.4 6.2 7.8 2.5 1 1 1 2 2 2 0 Flagellar Assembly Protein A CCM2_C PF16545.5 gi|119872204|ref|YP_930211.1| - 4.8 7.8 6.6 4.2 8.0 0.0 3.2 3 1 0 3 3 2 0 Cerebral cavernous malformation protein, harmonin-homology TMF_TATA_bd PF12325.8 gi|119872204|ref|YP_930211.1| - 9.3 6.5 16.8 1.4 9.2 11.6 2.3 2 1 0 2 2 1 0 TATA element modulatory factor 1 TATA binding AdoMet_Synthase PF01941.19 gi|119872205|ref|YP_930212.1| - 1.3e-172 574.0 5.8 1.5e-172 573.9 5.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|119872205|ref|YP_930212.1| - 0.14 12.8 7.9 1.1 9.9 0.0 3.7 3 1 1 4 4 4 0 S-adenosylmethionine synthetase, N-terminal domain Ribosomal_S13 PF00416.22 gi|119872205|ref|YP_930212.1| - 0.55 10.6 3.0 9.7 6.6 0.6 2.8 2 1 1 3 3 3 0 Ribosomal protein S13/S18 LSM PF01423.22 gi|119872206|ref|YP_930213.1| - 7.9e-18 63.9 0.1 8.9e-18 63.8 0.1 1.0 1 0 0 1 1 1 1 LSM domain RNA_pol_N PF01194.17 gi|119872207|ref|YP_930214.1| - 2.7e-26 91.6 0.3 3e-26 91.5 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|119872207|ref|YP_930214.1| - 0.0067 16.6 0.1 0.014 15.7 0.1 1.5 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S9 PF00380.19 gi|119872208|ref|YP_930215.1| - 1.1e-32 113.1 0.1 1.3e-32 112.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|119872209|ref|YP_930216.1| - 5.9e-12 45.9 1.1 3.7e-10 40.1 1.1 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|119872210|ref|YP_930217.1| - 1.7e-09 37.4 0.2 2e-09 37.1 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|119872210|ref|YP_930217.1| - 8.5e-07 29.7 0.8 1.5e-06 28.9 0.8 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L21e PF01157.18 gi|119872210|ref|YP_930217.1| - 0.059 13.2 0.6 1.3 8.9 0.0 2.8 1 1 2 3 3 3 0 Ribosomal protein L21e RNA_pol_A_bac PF01000.26 gi|119872211|ref|YP_930218.1| - 2.3e-26 92.3 0.0 4.7e-26 91.4 0.0 1.5 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|119872211|ref|YP_930218.1| - 1.7e-12 46.6 0.0 2.7e-12 45.9 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosom_S12_S23 PF00164.25 gi|119872212|ref|YP_930219.1| - 2.8e-44 149.4 0.2 3.6e-44 149.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|119872213|ref|YP_930220.1| - 3.2e-18 65.3 4.2 7.8e-13 48.1 0.3 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|119872213|ref|YP_930220.1| - 3e-12 46.4 3.6 8.8e-12 44.9 0.5 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|119872213|ref|YP_930220.1| - 1.6e-05 24.7 0.5 0.0016 18.3 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|119872213|ref|YP_930220.1| - 0.0081 16.0 3.7 0.18 11.6 0.1 2.4 1 1 1 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|119872214|ref|YP_930221.1| - 4.3e-17 61.6 0.0 5.2e-17 61.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.17 gi|119872215|ref|YP_930222.1| - 1.7e-52 178.5 0.1 2.4e-52 178.0 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HMA PF00403.26 gi|119872215|ref|YP_930222.1| - 0.011 16.1 7.4 0.62 10.6 0.2 4.1 2 1 2 4 4 4 0 Heavy-metal-associated domain RNA_pol_Rpb1_1 PF04997.12 gi|119872216|ref|YP_930223.1| - 1.6e-98 329.9 0.0 2.2e-98 329.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|119872216|ref|YP_930223.1| - 1.4e-73 246.6 0.0 2.3e-73 245.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|119872216|ref|YP_930223.1| - 1.2e-32 113.0 0.0 2.5e-32 112.0 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|119872216|ref|YP_930223.1| - 9.3e-26 89.9 0.0 1.8e-25 89.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|119872216|ref|YP_930223.1| - 4e-24 85.5 0.1 8e-24 84.5 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 CpXC PF14353.6 gi|119872216|ref|YP_930223.1| - 0.0073 16.3 2.7 0.28 11.2 0.0 3.6 4 0 0 4 4 4 1 CpXC protein zf-RING_7 PF02591.15 gi|119872216|ref|YP_930223.1| - 0.012 15.8 6.6 0.26 11.5 0.4 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain IBR PF01485.21 gi|119872216|ref|YP_930223.1| - 0.015 15.5 0.6 0.049 13.9 0.1 2.0 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain Auto_anti-p27 PF06677.12 gi|119872216|ref|YP_930223.1| - 0.098 12.8 1.1 1.1 9.5 0.1 2.7 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DevR PF01905.16 gi|119872216|ref|YP_930223.1| - 0.099 11.7 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 CRISPR-associated negative auto-regulator DevR/Csa2 DUF3782 PF12644.7 gi|119872216|ref|YP_930223.1| - 0.13 12.5 0.1 0.37 11.0 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) DZR PF12773.7 gi|119872216|ref|YP_930223.1| - 0.16 12.0 4.1 1.1 9.3 0.2 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119872216|ref|YP_930223.1| - 0.28 10.7 9.2 1.7 8.2 0.2 3.3 4 0 0 4 4 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119872216|ref|YP_930223.1| - 0.5 10.5 7.0 14 5.9 0.1 3.5 2 1 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|119872216|ref|YP_930223.1| - 0.53 10.3 7.4 8.1 6.5 0.1 3.6 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|119872216|ref|YP_930223.1| - 0.73 9.8 5.7 20 5.2 0.4 3.7 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119872216|ref|YP_930223.1| - 1.1 9.2 3.9 17 5.4 0.2 3.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|119872216|ref|YP_930223.1| - 4.4 7.4 10.0 1.6 8.7 0.3 3.6 4 0 0 4 4 3 0 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|119872216|ref|YP_930223.1| - 5.4 7.5 8.5 11 6.5 0.1 4.1 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 RNA_pol_Rpb2_6 PF00562.28 gi|119872217|ref|YP_930224.1| - 1.3e-133 445.9 0.0 1.9e-133 445.4 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|119872217|ref|YP_930224.1| - 9.2e-48 162.4 0.1 1.3e-47 161.9 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|119872217|ref|YP_930224.1| - 9.4e-29 100.4 0.0 1.8e-28 99.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|119872217|ref|YP_930224.1| - 6.9e-28 96.9 0.0 2.5e-27 95.1 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|119872217|ref|YP_930224.1| - 6e-27 93.6 0.1 1.6e-26 92.3 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|119872217|ref|YP_930224.1| - 2.9e-21 75.5 1.2 6.8e-21 74.3 1.2 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|119872217|ref|YP_930224.1| - 9.4e-10 38.9 2.1 4e-09 36.9 2.1 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|119872217|ref|YP_930224.1| - 0.035 14.4 0.1 0.28 11.5 0.1 2.4 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb5_C PF01191.19 gi|119872218|ref|YP_930225.1| - 3.8e-25 87.5 0.0 4.6e-25 87.3 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Choline_kin_N PF04428.14 gi|119872218|ref|YP_930225.1| - 0.11 12.2 0.7 0.24 11.1 0.7 1.5 1 0 0 1 1 1 0 Choline kinase N terminus ATP-synt_ab PF00006.25 gi|119872219|ref|YP_930226.1| - 7.7e-81 270.8 0.0 1.1e-80 270.3 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|119872219|ref|YP_930226.1| - 3.8e-39 133.3 0.0 6.3e-39 132.6 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|119872219|ref|YP_930226.1| - 7.9e-13 48.7 0.3 1.8e-12 47.6 0.3 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|119872219|ref|YP_930226.1| - 0.053 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain vATP-synt_E PF01991.18 gi|119872220|ref|YP_930227.1| - 2e-14 53.5 4.4 6.3e-14 51.8 4.4 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit SAM_Exu PF18609.1 gi|119872220|ref|YP_930227.1| - 0.067 13.3 1.0 0.39 10.8 0.0 2.6 3 0 0 3 3 3 0 Exuperantia SAM-like domain Orthopox_B11R PF07033.11 gi|119872220|ref|YP_930227.1| - 0.91 9.4 6.1 8 6.3 0.2 3.3 2 1 0 3 3 3 0 Orthopoxvirus B11R protein ATP-synt_F PF01990.17 gi|119872221|ref|YP_930228.1| - 9.2e-17 61.2 0.4 1.1e-16 60.9 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Tfb5 PF06331.12 gi|119872221|ref|YP_930228.1| - 0.0098 15.9 0.3 0.016 15.2 0.2 1.4 1 1 0 1 1 1 1 Transcription factor TFIIH complex subunit Tfb5 Dsl1_N PF11988.8 gi|119872221|ref|YP_930228.1| - 0.018 14.0 0.0 0.02 13.9 0.0 1.0 1 0 0 1 1 1 0 Retrograde transport protein Dsl1 N terminal Endonuc-FokI_C PF09254.11 gi|119872221|ref|YP_930228.1| - 0.13 11.5 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease FokI, C terminal CarS-like PF01864.17 gi|119872222|ref|YP_930229.1| - 4e-41 140.9 2.6 1e-40 139.6 2.6 1.6 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|119872222|ref|YP_930229.1| - 0.00067 19.5 0.4 0.00067 19.5 0.4 1.7 2 0 0 2 2 2 1 Cytidylyltransferase family zf-C2H2_4 PF13894.6 gi|119872223|ref|YP_930230.1| - 7.5e-10 38.8 8.2 0.0004 21.0 0.2 3.3 3 0 0 3 3 3 3 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|119872223|ref|YP_930230.1| - 1.6e-08 34.5 8.3 4.1e-05 23.8 0.1 3.5 3 1 0 3 3 3 2 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|119872223|ref|YP_930230.1| - 7.2e-08 32.6 5.1 4.6e-05 23.6 2.0 2.4 1 1 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf_UBZ PF18439.1 gi|119872223|ref|YP_930230.1| - 8.6e-06 25.2 4.1 0.19 11.3 0.7 3.5 3 1 0 3 3 3 2 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 gi|119872223|ref|YP_930230.1| - 0.00022 21.1 0.2 0.00022 21.1 0.2 3.3 3 0 0 3 3 3 1 C2H2-type zinc finger zf_C2H2_13 PF18508.1 gi|119872223|ref|YP_930230.1| - 0.00053 19.5 1.0 0.56 9.9 0.1 2.5 2 0 0 2 2 2 2 Zinc finger domain zf-C2H2_2 PF12756.7 gi|119872223|ref|YP_930230.1| - 0.0018 18.6 5.6 0.95 9.8 0.5 3.0 1 1 1 3 3 3 1 C2H2 type zinc-finger (2 copies) DUF4428 PF14471.6 gi|119872223|ref|YP_930230.1| - 0.002 18.0 4.9 0.37 10.8 1.4 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.10 gi|119872223|ref|YP_930230.1| - 0.0021 18.1 2.1 0.43 10.7 0.9 2.9 2 1 1 3 3 3 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119872223|ref|YP_930230.1| - 0.0027 17.1 5.0 1.1 8.8 0.1 3.1 3 0 0 3 3 3 2 zinc-ribbon domain YacG PF03884.14 gi|119872223|ref|YP_930230.1| - 0.0031 17.2 3.2 1.2 9.0 0.1 2.7 3 0 0 3 3 3 2 DNA gyrase inhibitor YacG zf-met PF12874.7 gi|119872223|ref|YP_930230.1| - 0.0033 17.8 10.4 0.086 13.3 0.0 4.0 3 2 0 3 3 3 1 Zinc-finger of C2H2 type zf-C2H2_9 PF16293.5 gi|119872223|ref|YP_930230.1| - 0.0053 16.6 4.2 2.4 8.1 0.2 3.1 2 1 1 3 3 3 1 C2H2 type zinc-finger (1 copy) DUF2256 PF10013.9 gi|119872223|ref|YP_930230.1| - 0.008 16.3 3.3 0.75 10.0 0.1 3.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2256) zinc-ribbons_6 PF07191.12 gi|119872223|ref|YP_930230.1| - 0.011 15.7 1.9 0.072 13.1 1.9 2.0 1 1 0 1 1 1 0 zinc-ribbons Prok-RING_4 PF14447.6 gi|119872223|ref|YP_930230.1| - 0.013 15.3 1.7 0.26 11.2 0.0 2.8 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 Sgf11 PF08209.11 gi|119872223|ref|YP_930230.1| - 0.016 14.8 2.4 0.75 9.4 0.0 2.9 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-C2HC_2 PF13913.6 gi|119872223|ref|YP_930230.1| - 0.018 14.9 8.4 2.4 8.1 0.2 3.5 3 1 0 3 3 3 0 zinc-finger of a C2HC-type zf-CpG_bind_C PF12269.8 gi|119872223|ref|YP_930230.1| - 0.021 14.6 8.2 0.74 9.5 0.4 2.9 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain YdjO PF14169.6 gi|119872223|ref|YP_930230.1| - 0.021 14.5 2.9 5 6.9 0.4 3.1 2 1 1 3 3 3 0 Cold-inducible protein YdjO Mut7-C PF01927.16 gi|119872223|ref|YP_930230.1| - 0.024 14.7 0.9 0.024 14.7 0.9 1.6 1 1 1 2 2 2 0 Mut7-C RNAse domain Zn_ribbon_SprT PF17283.2 gi|119872223|ref|YP_930230.1| - 0.026 14.4 4.4 0.031 14.2 0.1 2.6 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DUF2197 PF09963.9 gi|119872223|ref|YP_930230.1| - 0.028 14.7 2.4 1.2 9.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) DUF3268 PF11672.8 gi|119872223|ref|YP_930230.1| - 0.031 14.6 1.5 0.031 14.6 1.5 2.1 1 1 1 2 2 2 0 zinc-finger-containing domain RNF220 PF15926.5 gi|119872223|ref|YP_930230.1| - 0.032 13.9 1.7 0.088 12.4 0.2 2.2 1 1 2 3 3 3 0 E3 ubiquitin-protein ligase RNF220 DZR PF12773.7 gi|119872223|ref|YP_930230.1| - 0.04 14.0 3.1 1 9.4 3.1 2.4 1 1 0 1 1 1 0 Double zinc ribbon DUF1644 PF07800.12 gi|119872223|ref|YP_930230.1| - 0.041 13.9 3.2 0.08 13.0 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1644) zf-H2C2_2 PF13465.6 gi|119872223|ref|YP_930230.1| - 0.059 13.8 0.4 0.059 13.8 0.4 3.6 4 0 0 4 4 3 0 Zinc-finger double domain DUF629 PF04780.12 gi|119872223|ref|YP_930230.1| - 0.06 11.9 3.4 0.2 10.2 1.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF629) DNA_RNApol_7kD PF03604.13 gi|119872223|ref|YP_930230.1| - 0.064 13.0 4.1 0.91 9.3 0.1 3.0 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit PRP21_like_P PF12230.8 gi|119872223|ref|YP_930230.1| - 0.066 13.1 0.6 0.48 10.3 0.2 2.0 1 1 1 2 2 2 0 Pre-mRNA splicing factor PRP21 like protein zf-RRN7 PF11781.8 gi|119872223|ref|YP_930230.1| - 0.066 12.9 5.2 2.2 8.0 0.1 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|119872223|ref|YP_930230.1| - 0.066 13.2 0.8 36 4.5 0.0 3.1 3 0 0 3 3 3 0 Adenylate kinase, active site lid DUF2039 PF10217.9 gi|119872223|ref|YP_930230.1| - 0.069 13.5 3.7 0.11 12.9 3.7 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) Lar_restr_allev PF14354.6 gi|119872223|ref|YP_930230.1| - 0.072 13.5 2.3 1 9.8 0.2 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Actin_micro PF17003.5 gi|119872223|ref|YP_930230.1| - 0.074 12.2 6.0 0.93 8.6 0.5 2.6 1 1 2 3 3 3 0 Putative actin-like family HNH PF01844.23 gi|119872223|ref|YP_930230.1| - 0.076 13.2 2.9 3.5 7.9 0.9 3.1 2 1 0 2 2 2 0 HNH endonuclease Cript PF10235.9 gi|119872223|ref|YP_930230.1| - 0.08 13.5 7.2 0.29 11.7 1.8 2.2 1 1 1 2 2 2 0 Microtubule-associated protein CRIPT zf-C2H2_jaz PF12171.8 gi|119872223|ref|YP_930230.1| - 0.12 12.7 4.8 3.6 8.0 0.0 3.5 3 1 0 3 3 3 0 Zinc-finger double-stranded RNA-binding C1_2 PF03107.16 gi|119872223|ref|YP_930230.1| - 0.12 12.7 5.9 19 5.7 0.3 3.1 2 1 1 3 3 3 0 C1 domain zf-TFIIIC PF12660.7 gi|119872223|ref|YP_930230.1| - 0.12 12.3 3.8 3.9 7.5 3.8 2.7 1 1 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex RNHCP PF12647.7 gi|119872223|ref|YP_930230.1| - 0.13 12.2 3.8 3.5 7.6 0.2 2.8 3 0 0 3 3 3 0 RNHCP domain zf-BED PF02892.15 gi|119872223|ref|YP_930230.1| - 0.17 11.9 10.6 1.2 9.2 0.6 2.9 1 1 2 3 3 3 0 BED zinc finger Endonuclease_7 PF02945.15 gi|119872223|ref|YP_930230.1| - 0.22 11.5 2.4 0.22 11.5 0.8 1.7 1 1 1 2 2 2 0 Recombination endonuclease VII HNH_5 PF14279.6 gi|119872223|ref|YP_930230.1| - 0.23 11.3 2.8 1.4 8.8 0.9 2.7 2 1 0 2 2 2 0 HNH endonuclease zf-trcl PF13451.6 gi|119872223|ref|YP_930230.1| - 0.29 11.0 2.5 7.5 6.5 0.4 2.6 2 1 0 2 2 2 0 Probable zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|119872223|ref|YP_930230.1| - 0.4 10.8 0.2 0.4 10.8 0.2 2.5 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|119872223|ref|YP_930230.1| - 0.4 10.6 6.5 7.5 6.5 3.4 3.0 2 1 1 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF2321 PF10083.9 gi|119872223|ref|YP_930230.1| - 0.5 10.0 4.1 0.61 9.7 2.3 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-UBP PF02148.19 gi|119872223|ref|YP_930230.1| - 0.65 10.4 6.3 72 3.8 6.3 2.8 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein Desulfoferrod_N PF06397.12 gi|119872223|ref|YP_930230.1| - 0.74 9.5 6.0 1.5 8.5 0.1 2.6 3 0 0 3 3 2 0 Desulfoferrodoxin, N-terminal domain Cys_rich_KTR PF14205.6 gi|119872223|ref|YP_930230.1| - 0.77 9.6 4.1 0.31 10.9 0.8 2.1 2 1 0 2 2 2 0 Cysteine-rich KTR zf-HIT PF04438.16 gi|119872223|ref|YP_930230.1| - 0.87 9.5 6.8 11 6.0 0.1 3.1 3 0 0 3 3 3 0 HIT zinc finger zf-LSD1 PF06943.12 gi|119872223|ref|YP_930230.1| - 1.1 9.1 0.1 1.1 9.1 0.1 2.8 3 0 0 3 3 2 0 LSD1 zinc finger zf-C2H2_12 PF18658.1 gi|119872223|ref|YP_930230.1| - 2.1 8.0 8.5 1 9.0 0.4 2.8 1 1 2 3 3 3 0 Zinc-finger C2H2-type DUF1677 PF07911.13 gi|119872223|ref|YP_930230.1| - 3 8.3 7.5 1.6 9.2 2.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1677) TF_Zn_Ribbon PF08271.12 gi|119872223|ref|YP_930230.1| - 4.8 6.8 9.1 27 4.4 5.3 3.0 2 1 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|119872223|ref|YP_930230.1| - 5 7.0 8.0 9.3 6.1 0.3 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119872223|ref|YP_930230.1| - 5.2 7.1 7.4 29 4.7 2.8 2.9 2 1 0 2 2 2 0 Transposase zinc-ribbon domain Radical_SAM PF04055.21 gi|119872225|ref|YP_930232.1| - 2.1e-12 47.7 0.0 6.9e-12 46.1 0.0 2.0 1 0 0 1 1 1 1 Radical SAM superfamily Holin_BhlA PF10960.8 gi|119872225|ref|YP_930232.1| - 0.0055 16.7 0.4 0.012 15.5 0.4 1.5 1 0 0 1 1 1 1 BhlA holin family DUF2399 PF09664.10 gi|119872226|ref|YP_930233.1| - 0.077 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Internalin_N PF12354.8 gi|119872226|ref|YP_930233.1| - 0.12 12.5 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal Rad51 PF08423.11 gi|119872227|ref|YP_930234.1| - 1.8e-97 325.6 0.0 2.2e-97 325.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|119872227|ref|YP_930234.1| - 2.2e-14 53.6 0.1 2.9e-14 53.2 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|119872227|ref|YP_930234.1| - 1.1e-11 44.6 0.0 2.4e-11 43.4 0.0 1.7 1 1 0 1 1 1 1 KaiC HHH_5 PF14520.6 gi|119872227|ref|YP_930234.1| - 1e-08 35.7 0.7 3.8e-08 33.8 0.2 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|119872227|ref|YP_930234.1| - 4.5e-08 32.9 0.1 7.7e-08 32.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|119872227|ref|YP_930234.1| - 0.0011 19.5 0.0 0.0023 18.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119872227|ref|YP_930234.1| - 0.0012 19.2 0.0 0.0024 18.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|119872227|ref|YP_930234.1| - 0.0087 15.4 1.4 1.1 8.5 1.4 2.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain HhH-GPD PF00730.25 gi|119872227|ref|YP_930234.1| - 0.02 15.4 0.0 0.039 14.4 0.0 1.6 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein BAF PF02961.14 gi|119872227|ref|YP_930234.1| - 0.05 14.0 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor PAXNEB PF05625.11 gi|119872227|ref|YP_930234.1| - 0.058 12.5 0.1 0.87 8.7 0.0 2.1 2 0 0 2 2 2 0 PAXNEB protein AAA_24 PF13479.6 gi|119872227|ref|YP_930234.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|119872227|ref|YP_930234.1| - 0.13 12.6 0.0 0.31 11.4 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif ATP_bind_1 PF03029.17 gi|119872227|ref|YP_930234.1| - 0.14 11.9 0.1 0.41 10.4 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Met_10 PF02475.16 gi|119872228|ref|YP_930235.1| - 8.6e-52 175.8 0.1 1.1e-51 175.5 0.1 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|119872228|ref|YP_930235.1| - 0.026 14.1 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Na_H_antiport_3 PF07399.11 gi|119872228|ref|YP_930235.1| - 0.087 11.7 0.1 0.12 11.3 0.1 1.1 1 0 0 1 1 1 0 Putative Na+/H+ antiporter PrmA PF06325.13 gi|119872228|ref|YP_930235.1| - 0.096 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF2153 PF09921.9 gi|119872229|ref|YP_930236.1| - 5.4e-44 148.9 0.8 6.9e-44 148.6 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) CorA PF01544.18 gi|119872229|ref|YP_930236.1| - 0.00037 19.9 0.5 0.00045 19.6 0.5 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF16 PF01519.16 gi|119872229|ref|YP_930236.1| - 0.022 15.3 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF4635 PF15466.6 gi|119872229|ref|YP_930236.1| - 0.025 14.1 3.7 0.047 13.2 1.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4635) DUF3891 PF13030.6 gi|119872229|ref|YP_930236.1| - 0.037 13.8 0.1 0.046 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3891) Glyco_H_20C_C PF18088.1 gi|119872229|ref|YP_930236.1| - 0.041 13.7 1.8 0.079 12.8 1.8 1.5 1 0 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain Flg_hook PF02120.16 gi|119872229|ref|YP_930236.1| - 0.11 12.4 0.1 6.7 6.7 0.1 2.2 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK DivIVA PF05103.13 gi|119872229|ref|YP_930236.1| - 0.11 12.5 0.8 0.24 11.5 0.7 1.6 1 1 0 1 1 1 0 DivIVA protein DUF1400 PF07176.11 gi|119872229|ref|YP_930236.1| - 0.12 12.7 0.2 6.6 7.0 0.0 2.7 1 1 2 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF1400) DUF745 PF05335.13 gi|119872229|ref|YP_930236.1| - 0.15 11.8 0.4 0.19 11.4 0.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF745) DUF99 PF01949.16 gi|119872229|ref|YP_930236.1| - 0.18 11.2 0.4 2.2 7.7 0.0 2.0 1 1 0 2 2 2 0 Protein of unknown function DUF99 DUF2070 PF09843.9 gi|119872230|ref|YP_930237.1| - 8.4e-103 344.6 6.3 1.1e-102 344.2 6.3 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2985 PF11204.8 gi|119872230|ref|YP_930237.1| - 0.022 14.9 0.2 0.091 12.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2985) PilN PF05137.13 gi|119872231|ref|YP_930238.1| - 0.089 12.9 0.0 0.27 11.4 0.0 1.8 2 0 0 2 2 2 0 Fimbrial assembly protein (PilN) UDG PF03167.19 gi|119872232|ref|YP_930239.1| - 4.1e-42 143.8 0.0 5e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Ephrin_rec_like PF07699.13 gi|119872232|ref|YP_930239.1| - 0.15 11.9 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 Putative ephrin-receptor like THOC7 PF05615.13 gi|119872233|ref|YP_930240.1| - 0.0018 18.5 5.2 0.0028 17.9 5.2 1.4 1 0 0 1 1 1 1 Tho complex subunit 7 HrpB7 PF09486.10 gi|119872233|ref|YP_930240.1| - 0.0024 18.3 10.6 0.43 11.0 6.4 2.2 1 1 1 2 2 2 2 Bacterial type III secretion protein (HrpB7) AAA_13 PF13166.6 gi|119872233|ref|YP_930240.1| - 0.0042 15.8 2.4 0.0051 15.5 2.4 1.1 1 0 0 1 1 1 1 AAA domain COMM_domain PF07258.14 gi|119872233|ref|YP_930240.1| - 0.0069 16.5 0.9 4.8 7.4 0.4 2.5 2 0 0 2 2 2 2 COMM domain Lebercilin PF15619.6 gi|119872233|ref|YP_930240.1| - 0.034 13.8 9.1 0.07 12.8 5.9 2.0 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease OPA3 PF07047.12 gi|119872233|ref|YP_930240.1| - 0.066 13.0 0.2 0.16 11.7 0.1 1.6 1 1 0 1 1 1 0 Optic atrophy 3 protein (OPA3) Atg14 PF10186.9 gi|119872233|ref|YP_930240.1| - 0.12 11.4 8.7 0.22 10.6 8.7 1.4 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 FapA PF03961.13 gi|119872233|ref|YP_930240.1| - 0.12 10.9 2.7 0.15 10.6 2.7 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A STAT_alpha PF01017.20 gi|119872233|ref|YP_930240.1| - 0.15 12.0 3.3 0.28 11.1 3.3 1.5 1 0 0 1 1 1 0 STAT protein, all-alpha domain FliJ PF02050.16 gi|119872233|ref|YP_930240.1| - 0.2 11.9 6.9 0.34 11.1 6.9 1.4 1 0 0 1 1 1 0 Flagellar FliJ protein BRE1 PF08647.11 gi|119872233|ref|YP_930240.1| - 0.26 11.4 7.6 0.26 11.4 5.2 2.1 1 1 2 3 3 3 0 BRE1 E3 ubiquitin ligase DUF1664 PF07889.12 gi|119872233|ref|YP_930240.1| - 0.3 11.1 3.5 0.34 11.0 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF724 PF05266.14 gi|119872233|ref|YP_930240.1| - 0.3 10.9 4.4 0.49 10.2 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF16 PF01519.16 gi|119872233|ref|YP_930240.1| - 0.32 11.5 3.4 2 8.9 3.4 2.2 1 1 0 1 1 1 0 Protein of unknown function DUF16 V-SNARE_C PF12352.8 gi|119872233|ref|YP_930240.1| - 0.33 11.3 4.2 2.6 8.4 0.4 2.5 1 1 1 2 2 2 0 Snare region anchored in the vesicle membrane C-terminus YabA PF06156.13 gi|119872233|ref|YP_930240.1| - 0.33 11.6 4.6 0.68 10.6 2.0 2.1 2 0 0 2 2 2 0 Initiation control protein YabA Glyco_H_20C_C PF18088.1 gi|119872233|ref|YP_930240.1| - 0.34 10.7 5.5 0.94 9.3 0.1 2.1 1 1 1 2 2 2 0 Glycoside Hydrolase 20C C-terminal domain BLOC1_2 PF10046.9 gi|119872233|ref|YP_930240.1| - 0.35 11.2 5.5 3.6 7.9 2.1 2.5 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DLP_helical PF18709.1 gi|119872233|ref|YP_930240.1| - 0.39 9.9 6.0 0.51 9.5 2.3 1.9 1 1 1 2 2 2 0 Dynamin-like helical domain OmpH PF03938.14 gi|119872233|ref|YP_930240.1| - 0.84 10.0 8.0 8.3 6.8 8.0 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Jnk-SapK_ap_N PF09744.9 gi|119872233|ref|YP_930240.1| - 1.3 9.2 10.8 0.62 10.3 1.6 2.2 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 FlaC_arch PF05377.11 gi|119872233|ref|YP_930240.1| - 1.6 9.1 6.4 4 7.9 0.5 2.8 1 1 0 2 2 2 0 Flagella accessory protein C (FlaC) ZapB PF06005.12 gi|119872233|ref|YP_930240.1| - 7.9 7.0 12.3 3.5 8.1 6.4 2.3 2 0 0 2 2 2 0 Cell division protein ZapB RimK PF08443.11 gi|119872235|ref|YP_930242.1| - 3.7e-34 118.0 0.0 4.7e-34 117.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|119872235|ref|YP_930242.1| - 1e-15 57.6 0.0 1.6e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119872235|ref|YP_930242.1| - 1.1e-08 35.3 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|119872235|ref|YP_930242.1| - 2.8e-08 33.3 0.0 0.079 12.2 0.0 3.1 1 1 2 3 3 3 3 Sugar-transfer associated ATP-grasp Rimk_N PF18030.1 gi|119872235|ref|YP_930242.1| - 0.00015 22.0 0.0 0.00026 21.3 0.0 1.4 1 0 0 1 1 1 1 RimK PreATP-grasp domain ATP-grasp PF02222.22 gi|119872235|ref|YP_930242.1| - 0.007 16.0 0.0 0.017 14.7 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain TTL PF03133.15 gi|119872235|ref|YP_930242.1| - 0.0095 15.1 0.0 0.027 13.6 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|119872235|ref|YP_930242.1| - 0.019 14.2 0.0 0.85 8.8 0.0 2.3 2 0 0 2 2 2 0 YheC/D like ATP-grasp zf-P11 PF03854.14 gi|119872236|ref|YP_930243.1| - 0.062 13.0 1.4 0.11 12.1 1.4 1.4 1 0 0 1 1 1 0 P-11 zinc finger Laminin_EGF PF00053.24 gi|119872236|ref|YP_930243.1| - 0.22 11.7 7.7 0.38 10.9 7.7 1.4 1 0 0 1 1 1 0 Laminin EGF domain DUF2768 PF10966.8 gi|119872237|ref|YP_930244.1| - 0.005 17.2 3.5 0.005 17.2 3.5 3.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2768) SLAC1 PF03595.17 gi|119872237|ref|YP_930244.1| - 0.018 14.3 15.4 0.027 13.7 15.4 1.3 1 1 0 1 1 1 0 Voltage-dependent anion channel DUF3671 PF12420.8 gi|119872237|ref|YP_930244.1| - 9.9 6.3 15.0 59 3.8 12.3 2.7 1 1 1 2 2 2 0 Protein of unknown function HTH_IclR PF09339.10 gi|119872239|ref|YP_930246.1| - 2.6e-11 43.1 0.2 4.9e-11 42.2 0.2 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|119872239|ref|YP_930246.1| - 4.5e-11 42.5 0.5 1.1e-10 41.2 0.5 1.8 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|119872239|ref|YP_930246.1| - 4.8e-11 42.0 0.1 9.7e-11 41.1 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119872239|ref|YP_930246.1| - 1.2e-09 37.9 0.2 2.1e-09 37.1 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|119872239|ref|YP_930246.1| - 4.3e-09 36.3 0.2 7.3e-09 35.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|119872239|ref|YP_930246.1| - 4.5e-09 36.4 0.0 7.9e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|119872239|ref|YP_930246.1| - 3.9e-07 29.8 0.5 7.5e-07 28.9 0.5 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|119872239|ref|YP_930246.1| - 1.2e-06 28.9 0.1 3.6e-06 27.4 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|119872239|ref|YP_930246.1| - 1.5e-06 28.0 0.0 3.9e-06 26.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|119872239|ref|YP_930246.1| - 4e-06 26.7 0.5 1.1e-05 25.2 0.1 1.8 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|119872239|ref|YP_930246.1| - 4.7e-06 26.4 0.0 1.1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|119872239|ref|YP_930246.1| - 7.9e-06 25.4 0.2 1.3e-05 24.7 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.6 gi|119872239|ref|YP_930246.1| - 1.4e-05 25.0 0.2 2.8e-05 24.0 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|119872239|ref|YP_930246.1| - 1.8e-05 25.0 0.1 2.6e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|119872239|ref|YP_930246.1| - 0.00011 21.9 0.1 0.00021 21.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_41 PF14502.6 gi|119872239|ref|YP_930246.1| - 0.00018 21.1 0.0 0.00047 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RPA_C PF08784.11 gi|119872239|ref|YP_930246.1| - 0.00062 20.4 0.0 0.00088 19.9 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal TFIIE_alpha PF02002.17 gi|119872239|ref|YP_930246.1| - 0.00075 19.3 0.1 0.0021 17.9 0.0 1.7 1 1 1 2 2 2 1 TFIIE alpha subunit LexA_DNA_bind PF01726.16 gi|119872239|ref|YP_930246.1| - 0.00086 19.0 0.1 0.0017 18.1 0.1 1.6 1 1 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.6 gi|119872239|ref|YP_930246.1| - 0.001 19.0 0.0 0.0023 17.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|119872239|ref|YP_930246.1| - 0.0011 18.6 0.1 0.0044 16.7 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_CodY PF08222.11 gi|119872239|ref|YP_930246.1| - 0.0013 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_38 PF13936.6 gi|119872239|ref|YP_930246.1| - 0.0016 18.1 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|119872239|ref|YP_930246.1| - 0.0021 18.4 0.0 0.0034 17.7 0.0 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_29 PF13551.6 gi|119872239|ref|YP_930246.1| - 0.0024 17.8 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn helix DUF742 PF05331.11 gi|119872239|ref|YP_930246.1| - 0.003 17.3 0.0 0.0037 17.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF742) DUF4423 PF14394.6 gi|119872239|ref|YP_930246.1| - 0.004 16.9 0.0 0.0063 16.2 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.16 gi|119872239|ref|YP_930246.1| - 0.0042 16.6 0.2 0.0095 15.4 0.2 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 DUF3253 PF11625.8 gi|119872239|ref|YP_930246.1| - 0.0083 16.3 0.2 0.03 14.5 0.2 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3253) HTH_micro PF17007.5 gi|119872239|ref|YP_930246.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 1 0 1 1 1 0 HTH-like HTH_10 PF04967.12 gi|119872239|ref|YP_930246.1| - 0.016 15.0 0.0 0.043 13.6 0.0 1.8 1 1 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 gi|119872239|ref|YP_930246.1| - 0.019 15.1 0.7 0.027 14.6 0.7 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DprA_WH PF17782.1 gi|119872239|ref|YP_930246.1| - 0.019 15.1 0.1 0.027 14.6 0.1 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_34 PF13601.6 gi|119872239|ref|YP_930246.1| - 0.025 14.8 0.0 0.074 13.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain KORA PF16509.5 gi|119872239|ref|YP_930246.1| - 0.028 14.7 0.0 0.069 13.4 0.0 1.7 1 1 1 2 2 2 0 TrfB plasmid transcriptional repressor RP-C PF03428.13 gi|119872239|ref|YP_930246.1| - 0.029 14.0 0.0 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF2250 PF10007.9 gi|119872239|ref|YP_930246.1| - 0.038 14.1 0.1 0.063 13.4 0.0 1.5 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) ATP-synt_B PF00430.18 gi|119872239|ref|YP_930246.1| - 0.038 14.1 0.7 0.074 13.1 0.7 1.7 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) HTH_46 PF15977.5 gi|119872239|ref|YP_930246.1| - 0.038 14.0 0.0 0.07 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding PaaX PF07848.12 gi|119872239|ref|YP_930246.1| - 0.039 14.2 0.4 0.086 13.1 0.1 1.7 2 0 0 2 2 1 0 PaaX-like protein Sigma70_r3 PF04539.16 gi|119872239|ref|YP_930246.1| - 0.047 13.8 0.1 0.088 12.9 0.1 1.5 1 1 0 1 1 1 0 Sigma-70 region 3 Sid-5 PF17204.3 gi|119872239|ref|YP_930246.1| - 0.049 13.8 0.2 0.095 12.9 0.2 1.5 1 0 0 1 1 1 0 Sid-5 family HTH_8 PF02954.19 gi|119872239|ref|YP_930246.1| - 0.06 13.1 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_40 PF14493.6 gi|119872239|ref|YP_930246.1| - 0.063 13.7 0.0 0.21 12.1 0.0 1.7 1 1 0 2 2 2 0 Helix-turn-helix domain SpoIIID PF12116.8 gi|119872239|ref|YP_930246.1| - 0.071 13.2 0.0 0.15 12.2 0.0 1.5 1 1 0 1 1 1 0 Stage III sporulation protein D HTH_Tnp_ISL3 PF13542.6 gi|119872239|ref|YP_930246.1| - 0.077 12.4 0.0 0.21 11.0 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 SMC_Nse1 PF07574.13 gi|119872239|ref|YP_930246.1| - 0.11 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex ASCH PF04266.14 gi|119872241|ref|YP_930248.1| - 1.8e-12 47.8 0.8 2.1e-12 47.6 0.8 1.1 1 0 0 1 1 1 1 ASCH domain Peptidase_M24 PF00557.24 gi|119872242|ref|YP_930249.1| - 9e-57 192.1 1.1 1.1e-56 191.8 1.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|119872242|ref|YP_930249.1| - 2e-06 28.5 0.0 6.3e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Cons_hypoth95 PF03602.15 gi|119872243|ref|YP_930250.1| - 6.9e-06 25.8 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Spermine_synth PF01564.17 gi|119872243|ref|YP_930250.1| - 1.5e-05 24.5 0.0 2.1e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain MTS PF05175.14 gi|119872243|ref|YP_930250.1| - 6.7e-05 22.5 0.0 9.6e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|119872243|ref|YP_930250.1| - 0.0001 22.9 0.0 0.00018 22.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872243|ref|YP_930250.1| - 0.0067 17.1 0.0 0.016 15.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|119872243|ref|YP_930250.1| - 0.076 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 HD PF01966.22 gi|119872245|ref|YP_930252.1| - 5.1e-12 46.1 0.4 1.2e-11 44.9 0.4 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|119872245|ref|YP_930252.1| - 0.005 16.4 0.0 0.0081 15.7 0.0 1.3 1 0 0 1 1 1 1 HDOD domain PDEase_I PF00233.19 gi|119872245|ref|YP_930252.1| - 0.16 11.7 0.3 0.28 10.9 0.3 1.3 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase Pyr_redox_2 PF07992.14 gi|119872246|ref|YP_930253.1| - 0.0002 20.7 0.0 0.00049 19.4 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|119872246|ref|YP_930253.1| - 0.00041 19.7 0.7 0.1 11.8 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|119872246|ref|YP_930253.1| - 0.0077 15.3 0.6 0.61 9.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|119872246|ref|YP_930253.1| - 0.047 12.5 0.2 0.099 11.5 0.0 1.5 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|119872246|ref|YP_930253.1| - 0.14 12.5 0.2 0.41 10.9 0.2 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain tRNA-synt_1b PF00579.25 gi|119872247|ref|YP_930254.1| - 2.9e-40 138.4 0.0 6.1e-40 137.4 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Fur_reg_FbpA PF13076.6 gi|119872247|ref|YP_930254.1| - 0.14 11.9 1.8 1.1 9.0 0.1 2.5 2 0 0 2 2 2 0 Fur-regulated basic protein A Pilin_PilX PF11530.8 gi|119872247|ref|YP_930254.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Minor type IV pilin, PilX DUF3450 PF11932.8 gi|119872248|ref|YP_930255.1| - 0.095 12.0 0.2 0.14 11.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) PIN_6 PF17146.4 gi|119872249|ref|YP_930256.1| - 1.6e-08 34.9 0.5 3.9e-08 33.7 0.5 1.6 1 1 0 1 1 1 1 PIN domain of ribonuclease DUF4411 PF14367.6 gi|119872249|ref|YP_930256.1| - 1.3e-05 25.2 0.1 0.00013 21.9 0.0 2.4 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) PIN_5 PF08745.11 gi|119872249|ref|YP_930256.1| - 1.3e-05 24.7 1.1 4.3e-05 23.0 0.7 1.9 1 1 1 2 2 2 1 PINc domain ribonuclease PIN PF01850.21 gi|119872249|ref|YP_930256.1| - 0.00011 22.6 1.2 0.00022 21.7 0.8 1.7 1 1 1 2 2 2 1 PIN domain PIN_4 PF13638.6 gi|119872249|ref|YP_930256.1| - 0.013 15.8 0.0 0.033 14.5 0.0 1.6 1 1 1 2 2 2 0 PIN domain PIN_9 PF18477.1 gi|119872249|ref|YP_930256.1| - 0.039 14.3 0.1 0.052 13.9 0.1 1.3 1 0 0 1 1 1 0 PIN like domain NAD_kinase PF01513.21 gi|119872250|ref|YP_930257.1| - 1.2e-17 64.0 0.1 7.8e-17 61.4 0.1 1.9 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|119872250|ref|YP_930257.1| - 0.21 11.2 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain AFOR_C PF01314.18 gi|119872251|ref|YP_930258.1| - 1.1e-122 409.8 0.0 1.3e-122 409.5 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|119872251|ref|YP_930258.1| - 6e-74 248.2 0.3 9.6e-74 247.5 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Radical_SAM PF04055.21 gi|119872252|ref|YP_930259.1| - 4.7e-21 75.9 0.0 8.7e-21 75.0 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119872252|ref|YP_930259.1| - 0.13 12.4 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain TRAM PF01938.20 gi|119872252|ref|YP_930259.1| - 0.29 11.2 3.5 0.5 10.4 1.3 2.5 2 1 1 3 3 3 0 TRAM domain ILVD_EDD PF00920.21 gi|119872253|ref|YP_930260.1| - 2.4e-198 660.0 0.0 2.7e-198 659.8 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family HTH_45 PF14947.6 gi|119872254|ref|YP_930261.1| - 4.8e-11 42.5 0.0 5.7e-11 42.2 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|119872254|ref|YP_930261.1| - 0.014 15.1 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Mrr_N PF14338.6 gi|119872254|ref|YP_930261.1| - 0.12 12.5 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain DUF488 PF04343.13 gi|119872256|ref|YP_930263.1| - 1.3e-20 74.2 0.0 2.9e-20 73.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function, DUF488 Serpin PF00079.20 gi|119872257|ref|YP_930264.1| - 4.7e-72 243.3 0.0 6.3e-72 242.9 0.0 1.2 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) PK_C PF02887.16 gi|119872259|ref|YP_930266.1| - 0.0072 16.6 0.4 0.2 11.9 0.0 2.5 1 1 1 2 2 2 1 Pyruvate kinase, alpha/beta domain MTS PF05175.14 gi|119872260|ref|YP_930267.1| - 6.4e-12 45.3 0.0 8.4e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|119872260|ref|YP_930267.1| - 9.1e-12 45.0 0.0 1.2e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872260|ref|YP_930267.1| - 1e-11 45.3 0.4 9.9e-11 42.2 0.2 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872260|ref|YP_930267.1| - 2.6e-08 34.4 0.1 8.3e-08 32.8 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|119872260|ref|YP_930267.1| - 4.6e-08 32.8 0.3 6e-08 32.4 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|119872260|ref|YP_930267.1| - 9.1e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_23 PF13489.6 gi|119872260|ref|YP_930267.1| - 0.00016 21.5 0.0 0.00018 21.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872260|ref|YP_930267.1| - 0.00017 22.2 0.0 0.00027 21.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119872260|ref|YP_930267.1| - 0.00028 20.3 0.0 0.0004 19.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|119872260|ref|YP_930267.1| - 0.00049 19.8 0.0 0.0026 17.5 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 tRNA_U5-meth_tr PF05958.11 gi|119872260|ref|YP_930267.1| - 0.0083 15.1 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase TehB PF03848.14 gi|119872260|ref|YP_930267.1| - 0.0084 15.5 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|119872260|ref|YP_930267.1| - 0.023 14.7 0.0 0.041 13.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 gi|119872260|ref|YP_930267.1| - 0.032 13.2 0.0 0.036 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_24 PF13578.6 gi|119872260|ref|YP_930267.1| - 0.053 14.6 0.1 3 8.9 0.0 2.2 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|119872260|ref|YP_930267.1| - 0.064 12.7 0.5 0.17 11.3 0.0 1.8 2 0 0 2 2 2 0 Putative methyltransferase PIN PF01850.21 gi|119872260|ref|YP_930267.1| - 0.067 13.7 2.7 2.1 8.9 0.2 2.9 3 0 0 3 3 3 0 PIN domain Methyltransf_15 PF09445.10 gi|119872260|ref|YP_930267.1| - 0.091 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltrans_SAM PF10672.9 gi|119872260|ref|YP_930267.1| - 0.13 11.4 0.1 0.18 10.9 0.1 1.1 1 0 0 1 1 1 0 S-adenosylmethionine-dependent methyltransferase Methyltransf_16 PF10294.9 gi|119872260|ref|YP_930267.1| - 0.19 11.5 0.1 0.92 9.2 0.1 2.1 1 1 0 1 1 1 0 Lysine methyltransferase Band_7 PF01145.25 gi|119872261|ref|YP_930268.1| - 6.9e-18 65.3 16.1 4.7e-17 62.6 16.1 2.0 1 1 0 1 1 1 1 SPFH domain / Band 7 family Pilin PF00114.19 gi|119872261|ref|YP_930268.1| - 0.038 14.9 0.6 0.12 13.3 0.6 1.8 1 0 0 1 1 1 0 Pilin (bacterial filament) MarR_2 PF12802.7 gi|119872262|ref|YP_930269.1| - 3.4e-08 33.2 0.4 7.3e-08 32.2 0.4 1.6 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|119872262|ref|YP_930269.1| - 2.1e-06 27.2 0.1 3e-06 26.7 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119872262|ref|YP_930269.1| - 3.1e-06 27.0 0.1 4.3e-06 26.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|119872262|ref|YP_930269.1| - 5.1e-06 26.3 0.0 7.8e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119872262|ref|YP_930269.1| - 5.5e-05 23.1 0.1 8.5e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|119872262|ref|YP_930269.1| - 9.8e-05 22.7 0.0 0.00014 22.2 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_AsnC-type PF13404.6 gi|119872262|ref|YP_930269.1| - 0.00028 20.6 0.7 0.00049 19.9 0.7 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_42 PF06224.12 gi|119872262|ref|YP_930269.1| - 0.00031 20.4 0.0 0.00031 20.4 0.0 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|119872262|ref|YP_930269.1| - 0.0022 17.8 0.1 0.0054 16.5 0.1 1.8 1 1 0 1 1 1 1 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|119872262|ref|YP_930269.1| - 0.0023 17.7 0.0 0.003 17.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_27 PF13463.6 gi|119872262|ref|YP_930269.1| - 0.0024 18.3 0.0 0.0032 17.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|119872262|ref|YP_930269.1| - 0.0025 18.0 0.0 0.0042 17.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|119872262|ref|YP_930269.1| - 0.0061 16.4 0.0 0.0083 16.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|119872262|ref|YP_930269.1| - 0.009 15.6 0.1 0.014 15.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.9 gi|119872262|ref|YP_930269.1| - 0.0098 16.0 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) AbiEi_4 PF13338.6 gi|119872262|ref|YP_930269.1| - 0.012 15.8 0.2 0.018 15.2 0.2 1.3 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin TFIIE_alpha PF02002.17 gi|119872262|ref|YP_930269.1| - 0.014 15.2 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit PheRS_DBD1 PF18552.1 gi|119872262|ref|YP_930269.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 PheRS DNA binding domain 1 HTH_38 PF13936.6 gi|119872262|ref|YP_930269.1| - 0.027 14.2 0.3 0.34 10.7 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|119872262|ref|YP_930269.1| - 0.035 14.2 0.0 0.055 13.6 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DprA_WH PF17782.1 gi|119872262|ref|YP_930269.1| - 0.049 13.7 0.1 0.073 13.2 0.1 1.2 1 0 0 1 1 1 0 DprA winged helix domain HTH_Crp_2 PF13545.6 gi|119872262|ref|YP_930269.1| - 0.062 13.3 0.0 0.096 12.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FeoC PF09012.10 gi|119872262|ref|YP_930269.1| - 0.066 13.3 0.0 0.095 12.8 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.20 gi|119872262|ref|YP_930269.1| - 0.076 13.4 0.0 0.14 12.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.10 gi|119872262|ref|YP_930269.1| - 0.094 12.7 0.2 0.16 12.0 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PTPS_related PF10131.9 gi|119872262|ref|YP_930269.1| - 0.12 10.6 0.3 0.12 10.6 0.3 1.0 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein HTH_47 PF16221.5 gi|119872262|ref|YP_930269.1| - 0.14 11.7 0.5 0.48 10.0 0.0 1.9 2 0 0 2 2 2 0 winged helix-turn-helix RNA_pol_Rpc34 PF05158.12 gi|119872262|ref|YP_930269.1| - 0.2 11.0 0.0 0.24 10.7 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF3309 PF11752.8 gi|119872263|ref|YP_930270.1| - 0.2 11.7 0.4 0.2 11.7 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) NOG1 PF06858.14 gi|119872264|ref|YP_930271.1| - 1.4e-23 82.4 0.1 6.2e-23 80.3 0.0 2.1 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) NOG1_N PF17835.1 gi|119872264|ref|YP_930271.1| - 3.9e-22 78.9 0.1 6.2e-22 78.3 0.1 1.3 1 0 0 1 1 1 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|119872264|ref|YP_930271.1| - 2.3e-18 66.4 0.0 4e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|119872264|ref|YP_930271.1| - 3.1e-13 49.5 0.0 4.8e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B AIG1 PF04548.16 gi|119872264|ref|YP_930271.1| - 0.004 16.5 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 AIG1 family MMR_HSR1_Xtn PF16897.5 gi|119872264|ref|YP_930271.1| - 0.0084 16.1 0.0 0.6 10.2 0.0 2.5 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain ATP_bind_1 PF03029.17 gi|119872264|ref|YP_930271.1| - 0.0088 15.9 0.0 0.94 9.2 0.0 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|119872264|ref|YP_930271.1| - 0.011 15.8 0.5 0.69 10.0 0.0 2.6 1 1 1 2 2 2 0 Dynamin family PduV-EutP PF10662.9 gi|119872264|ref|YP_930271.1| - 0.013 15.2 0.1 0.039 13.7 0.0 1.9 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|119872264|ref|YP_930271.1| - 0.19 11.0 0.1 14 4.8 0.0 2.4 1 1 1 2 2 2 0 Septin RTC PF01137.21 gi|119872265|ref|YP_930272.1| - 1.9e-83 279.1 0.1 2.1e-83 278.9 0.1 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|119872265|ref|YP_930272.1| - 1.4e-25 89.8 0.8 2.5e-25 88.9 0.8 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Proteasome PF00227.26 gi|119872266|ref|YP_930273.1| - 5.1e-53 179.4 0.2 5.7e-53 179.2 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit ETF_alpha PF00766.19 gi|119872267|ref|YP_930274.1| - 1e-31 108.8 0.0 2e-31 107.9 0.0 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|119872267|ref|YP_930274.1| - 2.7e-19 69.8 3.0 4.4e-19 69.1 3.0 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|119872268|ref|YP_930275.1| - 3.2e-49 167.3 6.6 3.9e-49 167.0 6.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Ribosomal_L12 PF00542.19 gi|119872268|ref|YP_930275.1| - 1.8 9.0 6.5 18 5.8 2.8 2.9 2 1 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain tRNA-synt_2 PF00152.20 gi|119872269|ref|YP_930276.1| - 3.8e-56 190.4 0.0 4.4e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) RNA_pol_inhib PF16857.5 gi|119872269|ref|YP_930276.1| - 0.018 14.9 1.0 2.1 8.2 0.1 2.5 2 0 0 2 2 2 0 RNA polymerase inhibitor ACT_6 PF13740.6 gi|119872270|ref|YP_930277.1| - 5.9e-18 64.6 0.9 6.9e-18 64.4 0.9 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|119872270|ref|YP_930277.1| - 1.1e-12 47.5 2.1 1.4e-12 47.2 2.1 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|119872270|ref|YP_930277.1| - 1.9e-06 27.6 1.5 2.8e-06 27.0 1.5 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|119872270|ref|YP_930277.1| - 7.2e-05 23.3 1.7 0.0001 22.8 1.7 1.2 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.12 gi|119872271|ref|YP_930278.1| - 1.4e-135 452.4 2.8 1.6e-135 452.1 2.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Methyltr_RsmB-F PF01189.17 gi|119872274|ref|YP_930281.1| - 5.4e-34 117.6 0.0 1e-33 116.7 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_25 PF13649.6 gi|119872274|ref|YP_930281.1| - 7.4e-06 26.6 0.0 0.00077 20.1 0.0 3.1 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872274|ref|YP_930281.1| - 4e-05 23.5 0.0 6.7e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872274|ref|YP_930281.1| - 0.027 15.1 0.2 3.5 8.4 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|119872274|ref|YP_930281.1| - 0.042 14.0 0.0 0.069 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|119872274|ref|YP_930281.1| - 0.055 13.2 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|119872274|ref|YP_930281.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltr_RsmF_N PF17125.5 gi|119872274|ref|YP_930281.1| - 0.16 12.4 0.0 0.42 11.1 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of 16S rRNA methyltransferase RsmF CMAS PF02353.20 gi|119872274|ref|YP_930281.1| - 0.17 11.1 0.0 0.3 10.3 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Metallophos_2 PF12850.7 gi|119872275|ref|YP_930282.1| - 1.9e-31 109.5 0.0 2.3e-31 109.2 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119872275|ref|YP_930282.1| - 7.4e-07 29.9 0.2 0.00069 20.2 0.0 2.1 1 1 0 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|119872275|ref|YP_930282.1| - 8.4e-05 22.0 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Ribosomal_L5_C PF00673.21 gi|119872276|ref|YP_930283.1| - 4.7e-24 84.4 0.0 1.3e-23 82.9 0.0 1.8 2 1 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|119872276|ref|YP_930283.1| - 5.1e-17 61.9 0.4 1.4e-16 60.5 0.1 1.8 2 0 0 2 2 2 1 Ribosomal protein L5 Late_protein_L1 PF00500.18 gi|119872276|ref|YP_930283.1| - 0.081 11.7 0.0 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 L1 (late) protein TPR_8 PF13181.6 gi|119872276|ref|YP_930283.1| - 0.086 13.1 0.3 22 5.6 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|119872276|ref|YP_930283.1| - 0.1 12.5 0.1 7.4 6.6 0.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat PAC2 PF09754.9 gi|119872277|ref|YP_930284.1| - 1.7e-34 119.7 0.3 2.3e-34 119.3 0.3 1.2 1 0 0 1 1 1 1 PAC2 family Abhydrolase_6 PF12697.7 gi|119872278|ref|YP_930285.1| - 1.8e-09 38.6 0.9 0.00019 22.1 1.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|119872278|ref|YP_930285.1| - 2.1e-09 37.4 0.0 3.8e-05 23.5 0.2 2.3 2 1 1 3 3 3 2 alpha/beta hydrolase fold Esterase PF00756.20 gi|119872278|ref|YP_930285.1| - 8.2e-08 32.2 0.0 9.5e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|119872278|ref|YP_930285.1| - 1e-06 28.2 0.1 0.00013 21.3 0.2 2.7 1 1 2 3 3 3 1 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|119872278|ref|YP_930285.1| - 1.4e-06 28.0 0.0 1.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PGAP1 PF07819.13 gi|119872278|ref|YP_930285.1| - 0.00017 21.4 0.0 0.0002 21.1 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein DLH PF01738.18 gi|119872278|ref|YP_930285.1| - 0.0037 16.8 0.1 0.05 13.1 0.1 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|119872278|ref|YP_930285.1| - 0.0076 15.9 0.0 0.022 14.4 0.0 1.7 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|119872278|ref|YP_930285.1| - 0.01 15.8 0.0 0.023 14.6 0.0 1.8 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.16 gi|119872278|ref|YP_930285.1| - 0.011 15.5 0.0 0.65 9.8 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Lipase_3 PF01764.25 gi|119872278|ref|YP_930285.1| - 0.038 13.9 0.0 0.091 12.6 0.0 1.6 2 0 0 2 2 2 0 Lipase (class 3) Abhydrolase_5 PF12695.7 gi|119872278|ref|YP_930285.1| - 0.041 13.6 0.1 0.31 10.8 0.1 2.3 2 1 0 2 2 2 0 Alpha/beta hydrolase family Pribosyltran PF00156.27 gi|119872278|ref|YP_930285.1| - 0.16 11.4 0.1 0.99 8.9 0.0 2.1 2 1 1 3 3 3 0 Phosphoribosyl transferase domain Thioesterase PF00975.20 gi|119872278|ref|YP_930285.1| - 0.18 11.9 0.4 0.5 10.4 0.2 1.7 1 1 0 2 2 2 0 Thioesterase domain PhaG_MnhG_YufB PF03334.14 gi|119872279|ref|YP_930286.1| - 0.0015 18.7 0.6 0.0015 18.7 0.6 2.2 2 0 0 2 2 2 1 Na+/H+ antiporter subunit Radical_SAM PF04055.21 gi|119872280|ref|YP_930287.1| - 6.5e-09 36.4 0.1 2.4e-07 31.3 0.0 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119872280|ref|YP_930287.1| - 0.00024 21.4 0.0 0.00041 20.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119872280|ref|YP_930287.1| - 0.0025 17.9 0.0 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ssDBP_DBD PF18361.1 gi|119872281|ref|YP_930288.1| - 1.2e-60 203.6 2.0 1.4e-60 203.3 2.0 1.1 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain Cnn_1N PF07989.11 gi|119872281|ref|YP_930288.1| - 0.00057 20.0 1.8 0.0011 19.1 1.8 1.5 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 ZapB PF06005.12 gi|119872281|ref|YP_930288.1| - 0.0011 19.4 3.6 0.0018 18.6 3.6 1.4 1 0 0 1 1 1 1 Cell division protein ZapB bZIP_1 PF00170.21 gi|119872281|ref|YP_930288.1| - 0.0075 16.3 1.4 0.013 15.5 1.4 1.3 1 0 0 1 1 1 1 bZIP transcription factor Myc-LZ PF02344.15 gi|119872281|ref|YP_930288.1| - 0.0086 16.1 3.6 0.017 15.2 3.6 1.5 1 0 0 1 1 1 1 Myc leucine zipper domain bZIP_2 PF07716.15 gi|119872281|ref|YP_930288.1| - 0.0092 16.0 1.7 0.018 15.1 1.7 1.4 1 0 0 1 1 1 1 Basic region leucine zipper DUF3584 PF12128.8 gi|119872281|ref|YP_930288.1| - 0.018 12.6 0.4 0.022 12.3 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DivIVA PF05103.13 gi|119872281|ref|YP_930288.1| - 0.039 14.1 1.2 0.061 13.4 1.2 1.3 1 0 0 1 1 1 0 DivIVA protein DivIC PF04977.15 gi|119872281|ref|YP_930288.1| - 0.048 13.4 0.3 0.083 12.7 0.3 1.4 1 0 0 1 1 1 0 Septum formation initiator YabA PF06156.13 gi|119872281|ref|YP_930288.1| - 0.05 14.3 0.6 0.12 13.0 0.6 1.6 1 0 0 1 1 1 0 Initiation control protein YabA DUF5320 PF17253.2 gi|119872281|ref|YP_930288.1| - 0.069 14.2 2.8 0.091 13.8 0.3 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5320) Csm1_N PF18504.1 gi|119872281|ref|YP_930288.1| - 0.13 12.7 2.7 0.21 11.9 2.7 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain SlyX PF04102.12 gi|119872281|ref|YP_930288.1| - 0.13 12.9 1.7 0.25 12.0 1.7 1.4 1 0 0 1 1 1 0 SlyX SpoOE-like PF09388.10 gi|119872281|ref|YP_930288.1| - 0.14 12.1 3.6 0.28 11.1 3.6 1.5 1 0 0 1 1 1 0 Spo0E like sporulation regulatory protein HALZ PF02183.18 gi|119872281|ref|YP_930288.1| - 0.17 12.1 3.2 0.45 10.8 2.8 1.8 2 0 0 2 2 2 0 Homeobox associated leucine zipper Spc24 PF08286.11 gi|119872281|ref|YP_930288.1| - 0.19 12.0 1.4 0.29 11.4 1.4 1.3 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 IFP_35_N PF07334.13 gi|119872281|ref|YP_930288.1| - 0.41 10.7 3.6 0.77 9.9 3.6 1.4 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Aminotran_1_2 PF00155.21 gi|119872282|ref|YP_930289.1| - 8.6e-58 196.2 0.0 1e-57 196.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|119872282|ref|YP_930289.1| - 1.6e-10 40.1 0.0 2.2e-10 39.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|119872282|ref|YP_930289.1| - 4.9e-09 36.0 0.0 7.5e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PCuAC PF04314.13 gi|119872282|ref|YP_930289.1| - 0.17 11.7 0.0 0.45 10.3 0.0 1.6 2 0 0 2 2 2 0 Copper chaperone PCu(A)C Beta_elim_lyase PF01212.21 gi|119872282|ref|YP_930289.1| - 0.25 10.6 0.0 0.42 9.8 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase Ribosomal_S3Ae PF01015.18 gi|119872283|ref|YP_930290.1| - 3.1e-59 199.9 0.1 4e-59 199.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal S3Ae family Radical_SAM PF04055.21 gi|119872284|ref|YP_930291.1| - 0.029 14.7 0.9 0.042 14.2 0.9 1.3 1 0 0 1 1 1 0 Radical SAM superfamily KH_1 PF00013.29 gi|119872284|ref|YP_930291.1| - 0.064 13.1 0.2 0.2 11.5 0.2 1.9 1 0 0 1 1 1 0 KH domain RIO1 PF01163.22 gi|119872285|ref|YP_930292.1| - 1.7e-42 145.2 0.0 2.4e-42 144.7 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|119872285|ref|YP_930292.1| - 0.00023 21.2 0.1 0.0015 18.5 0.1 1.9 1 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|119872285|ref|YP_930292.1| - 0.00045 19.7 0.0 0.0014 18.1 0.0 1.7 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|119872285|ref|YP_930292.1| - 0.079 12.3 0.0 5.4 6.3 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family POR PF01558.18 gi|119872286|ref|YP_930293.1| - 4.7e-39 134.3 0.0 6.1e-39 133.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PBAN PF05874.11 gi|119872286|ref|YP_930293.1| - 0.071 13.0 0.0 7.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Pheromone biosynthesis activating neuropeptide (PBAN) IstB_IS21 PF01695.17 gi|119872286|ref|YP_930293.1| - 0.25 11.1 0.1 0.34 10.6 0.1 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein TPP_enzyme_C PF02775.21 gi|119872287|ref|YP_930294.1| - 1.9e-18 66.7 0.4 5.6e-18 65.2 0.4 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|119872287|ref|YP_930294.1| - 2.1e-13 50.6 0.2 2.1e-13 50.6 0.2 1.9 2 1 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|119872287|ref|YP_930294.1| - 4.8e-12 45.2 10.9 1.3e-08 34.3 4.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119872287|ref|YP_930294.1| - 7.8e-08 32.0 10.5 0.00012 21.9 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872287|ref|YP_930294.1| - 9.3e-07 28.9 5.9 1.7e-06 28.0 5.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119872287|ref|YP_930294.1| - 1.2e-06 28.9 8.3 0.00021 21.8 2.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119872287|ref|YP_930294.1| - 3.2e-06 27.0 3.7 3.2e-06 27.0 3.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119872287|ref|YP_930294.1| - 2e-05 24.6 3.6 0.00086 19.4 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872287|ref|YP_930294.1| - 0.00088 20.2 4.8 0.0012 19.8 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|119872287|ref|YP_930294.1| - 0.0019 18.3 9.1 0.015 15.4 1.9 2.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119872287|ref|YP_930294.1| - 0.0024 18.6 7.4 0.23 12.2 1.5 2.8 2 1 1 3 3 2 2 4Fe-4S single cluster domain TPP_enzyme_N PF02776.18 gi|119872287|ref|YP_930294.1| - 0.0032 17.1 0.3 0.055 13.1 0.1 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_13 PF13370.6 gi|119872287|ref|YP_930294.1| - 0.008 16.7 7.0 0.17 12.4 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|119872287|ref|YP_930294.1| - 0.11 13.1 13.3 0.066 13.8 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119872287|ref|YP_930294.1| - 2.1 8.9 12.9 1.3 9.6 3.0 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872287|ref|YP_930294.1| - 3.3 8.3 11.6 0.76 10.4 2.0 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain RNA_POL_M_15KD PF02150.16 gi|119872288|ref|YP_930295.1| - 9.8e-06 25.3 0.1 1.8e-05 24.5 0.1 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|119872288|ref|YP_930295.1| - 5.2e-05 22.8 0.1 0.00017 21.2 0.1 1.9 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|119872288|ref|YP_930295.1| - 0.00096 18.4 0.4 0.0024 17.1 0.4 1.7 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.7 gi|119872288|ref|YP_930295.1| - 0.0019 18.2 0.1 0.0028 17.6 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119872288|ref|YP_930295.1| - 0.023 14.4 2.4 0.039 13.7 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain FYDLN_acid PF09538.10 gi|119872288|ref|YP_930295.1| - 0.026 15.2 1.8 0.033 14.9 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Mu-like_Com PF10122.9 gi|119872288|ref|YP_930295.1| - 0.03 13.8 0.2 0.87 9.1 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com PorA PF11271.8 gi|119872288|ref|YP_930295.1| - 0.05 12.9 0.1 0.057 12.7 0.1 1.0 1 0 0 1 1 1 0 Porin PorA DNase-RNase PF02577.14 gi|119872289|ref|YP_930296.1| - 2.8e-34 117.5 0.0 3.4e-34 117.3 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease DUF5041 PF16444.5 gi|119872289|ref|YP_930296.1| - 0.17 12.1 0.1 0.25 11.6 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5041) Ribosomal_S13_N PF08069.12 gi|119872292|ref|YP_930299.1| - 1.8e-25 88.7 0.0 3.3e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|119872292|ref|YP_930299.1| - 2.3e-15 56.6 0.9 3.5e-15 56.0 0.9 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RecX PF02631.16 gi|119872292|ref|YP_930299.1| - 0.057 13.9 0.2 3.3 8.2 0.0 2.2 2 0 0 2 2 2 0 RecX family HTH_32 PF13565.6 gi|119872292|ref|YP_930299.1| - 0.095 13.3 3.0 0.31 11.7 0.2 2.2 1 1 1 2 2 2 0 Homeodomain-like domain CMAS PF02353.20 gi|119872293|ref|YP_930300.1| - 1.8e-08 34.0 0.0 2.2e-08 33.7 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|119872293|ref|YP_930300.1| - 4.3e-07 29.7 0.0 5.5e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Histone methylation protein DOT1 PCMT PF01135.19 gi|119872293|ref|YP_930300.1| - 1e-06 28.7 0.0 1.2e-06 28.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|119872293|ref|YP_930300.1| - 0.00051 19.9 0.0 0.0007 19.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872293|ref|YP_930300.1| - 0.00056 20.6 0.0 0.00087 19.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|119872293|ref|YP_930300.1| - 0.0016 17.9 0.0 0.0021 17.6 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_32 PF13679.6 gi|119872293|ref|YP_930300.1| - 0.0017 18.4 0.0 0.0019 18.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|119872293|ref|YP_930300.1| - 0.0019 17.9 0.0 0.0021 17.8 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_18 PF12847.7 gi|119872293|ref|YP_930300.1| - 0.0023 17.8 0.0 0.0028 17.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|119872293|ref|YP_930300.1| - 0.0088 15.1 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|119872293|ref|YP_930300.1| - 0.0097 15.5 0.1 0.012 15.2 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW N6_Mtase PF02384.16 gi|119872293|ref|YP_930300.1| - 0.015 14.6 0.0 0.019 14.2 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase Methyltransf_11 PF08241.12 gi|119872293|ref|YP_930300.1| - 0.06 14.0 0.0 0.097 13.3 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872293|ref|YP_930300.1| - 0.11 12.3 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain HTH_11 PF08279.12 gi|119872294|ref|YP_930301.1| - 0.0012 18.7 0.5 0.0023 17.8 0.5 1.5 1 0 0 1 1 1 1 HTH domain HTH_47 PF16221.5 gi|119872294|ref|YP_930301.1| - 0.0013 18.3 0.0 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 winged helix-turn-helix HTH_24 PF13412.6 gi|119872294|ref|YP_930301.1| - 0.032 13.8 1.1 0.054 13.1 0.3 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119872294|ref|YP_930301.1| - 0.051 13.5 0.3 0.1 12.5 0.3 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.11 gi|119872294|ref|YP_930301.1| - 0.069 13.8 0.1 0.11 13.2 0.1 1.2 1 0 0 1 1 1 0 Replication protein A C terminal HTH_20 PF12840.7 gi|119872294|ref|YP_930301.1| - 0.14 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|119872294|ref|YP_930301.1| - 0.19 12.3 1.0 0.82 10.2 0.3 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain DS PF01916.17 gi|119872295|ref|YP_930302.1| - 1.4e-87 293.6 0.0 1.6e-87 293.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Glycos_transf_4 PF00953.21 gi|119872296|ref|YP_930303.1| - 2.3e-26 92.7 12.9 2.3e-26 92.7 12.9 2.6 2 1 1 3 3 3 1 Glycosyl transferase family 4 Ras PF00071.22 gi|119872298|ref|YP_930305.1| - 6.7e-07 29.0 0.4 4.8e-06 26.2 0.4 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|119872298|ref|YP_930305.1| - 1.3e-06 28.0 0.0 1.4e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|119872298|ref|YP_930305.1| - 3e-06 27.3 0.0 3.9e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|119872298|ref|YP_930305.1| - 0.02 14.7 0.0 0.058 13.1 0.0 1.7 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Roc PF08477.13 gi|119872298|ref|YP_930305.1| - 0.025 14.8 0.1 0.18 12.0 0.1 2.0 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase FeoB_N PF02421.18 gi|119872298|ref|YP_930305.1| - 0.031 13.8 0.0 0.1 12.1 0.0 1.8 1 1 0 1 1 1 0 Ferrous iron transport protein B DUF1286 PF06939.11 gi|119872299|ref|YP_930306.1| - 0.16 12.3 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1286) Hydrolase_3 PF08282.12 gi|119872300|ref|YP_930307.1| - 5.7e-27 95.1 0.1 3.4e-15 56.5 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119872300|ref|YP_930307.1| - 1.9e-11 44.0 0.3 5e-08 32.8 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|119872300|ref|YP_930307.1| - 8.4e-05 23.1 2.4 0.014 15.8 0.1 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119872300|ref|YP_930307.1| - 0.00024 21.4 1.9 0.78 10.0 0.4 3.2 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|119872300|ref|YP_930307.1| - 0.021 14.9 0.0 0.05 13.7 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|119872300|ref|YP_930307.1| - 0.076 12.1 0.0 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 Trehalose-phosphatase Lactamase_B PF00753.27 gi|119872303|ref|YP_930310.1| - 3.7e-05 23.8 1.3 6.1e-05 23.1 1.3 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF123 PF01986.16 gi|119872304|ref|YP_930311.1| - 8.1e-13 48.7 0.0 1.2e-12 48.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 SIR2 PF02146.17 gi|119872305|ref|YP_930312.1| - 2e-59 200.5 0.0 2.3e-59 200.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|119872305|ref|YP_930312.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Zn-ribbon_8 PF09723.10 gi|119872305|ref|YP_930312.1| - 0.044 13.9 0.3 0.08 13.1 0.3 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|119872305|ref|YP_930312.1| - 0.072 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|119872305|ref|YP_930312.1| - 0.13 11.7 2.6 0.49 9.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 gi|119872305|ref|YP_930312.1| - 0.23 11.5 0.1 0.43 10.6 0.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain Zn_ribbon_SprT PF17283.2 gi|119872305|ref|YP_930312.1| - 0.7 9.9 4.4 3.9 7.5 4.4 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Lon_C PF05362.13 gi|119872306|ref|YP_930313.1| - 1.6e-12 47.4 2.9 2e-12 47.1 1.2 1.9 2 0 0 2 2 2 1 Lon protease (S16) C-terminal proteolytic domain Birna_VP4 PF01768.16 gi|119872306|ref|YP_930313.1| - 0.0078 16.1 0.3 2 8.2 0.1 2.4 2 0 0 2 2 2 2 Birnavirus VP4 protein ChlI PF13541.6 gi|119872306|ref|YP_930313.1| - 0.029 14.2 0.9 0.061 13.2 0.0 2.0 3 0 0 3 3 3 0 Subunit ChlI of Mg-chelatase DUF805 PF05656.14 gi|119872307|ref|YP_930314.1| - 0.11 12.9 0.5 0.15 12.5 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Resolvase PF00239.21 gi|119872309|ref|YP_930316.1| - 3.1e-33 114.9 0.1 4.6e-33 114.4 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4 PF04545.16 gi|119872309|ref|YP_930316.1| - 0.004 16.6 3.6 0.011 15.2 0.1 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_IS1 PF12759.7 gi|119872309|ref|YP_930316.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 InsA C-terminal domain HTH_7 PF02796.15 gi|119872309|ref|YP_930316.1| - 0.02 15.0 0.1 0.062 13.4 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Lar_restr_allev PF14354.6 gi|119872309|ref|YP_930316.1| - 0.03 14.7 0.2 0.087 13.2 0.2 1.7 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4_2 PF08281.12 gi|119872309|ref|YP_930316.1| - 0.031 14.0 0.1 0.099 12.3 0.1 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 DZR PF12773.7 gi|119872309|ref|YP_930316.1| - 0.044 13.8 0.2 0.075 13.1 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Complex1_LYR PF05347.15 gi|119872309|ref|YP_930316.1| - 0.068 13.2 0.3 0.2 11.7 0.3 1.8 1 0 0 1 1 1 0 Complex 1 protein (LYR family) TnsD PF15978.5 gi|119872309|ref|YP_930316.1| - 0.092 11.7 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Tn7-like transposition protein D GCP_N_terminal PF17681.1 gi|119872309|ref|YP_930316.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal DUF678 PF05077.12 gi|119872309|ref|YP_930316.1| - 0.11 12.6 0.1 0.21 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF678) Zn_Tnp_IS1595 PF12760.7 gi|119872309|ref|YP_930316.1| - 0.19 11.7 1.2 0.55 10.3 1.2 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-HIT PF04438.16 gi|119872309|ref|YP_930316.1| - 1.2 9.1 6.1 3.8 7.5 6.1 1.8 1 1 0 1 1 1 0 HIT zinc finger Pribosyltran PF00156.27 gi|119872310|ref|YP_930317.1| - 8.1e-19 67.7 0.0 1.1e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|119872310|ref|YP_930317.1| - 0.0013 18.2 0.1 0.0016 17.9 0.1 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase CTP_synth_N PF06418.14 gi|119872311|ref|YP_930318.1| - 9.6e-118 392.3 0.2 1.3e-117 391.9 0.2 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|119872311|ref|YP_930318.1| - 2.8e-51 174.0 0.0 4.6e-51 173.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|119872311|ref|YP_930318.1| - 3.2e-07 30.3 0.0 8.8e-07 28.9 0.0 1.7 2 0 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|119872311|ref|YP_930318.1| - 0.00087 19.3 0.0 0.0013 18.8 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FliH PF02108.16 gi|119872313|ref|YP_930320.1| - 0.0054 16.8 0.4 0.013 15.6 0.4 1.7 1 1 0 1 1 1 1 Flagellar assembly protein FliH PSK_trans_fac PF07704.11 gi|119872313|ref|YP_930320.1| - 0.0099 16.6 0.3 0.0099 16.6 0.3 2.3 2 1 0 2 2 2 1 Rv0623-like transcription factor DUF2610 PF11020.8 gi|119872313|ref|YP_930320.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) Metallophos_2 PF12850.7 gi|119872314|ref|YP_930321.1| - 9.5e-10 38.9 0.2 1.3e-09 38.4 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|119872314|ref|YP_930321.1| - 2.4e-08 34.7 0.3 1.3e-07 32.3 0.4 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Lactamase_B_2 PF12706.7 gi|119872315|ref|YP_930322.1| - 1.1e-26 93.6 0.2 1.4e-26 93.2 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119872315|ref|YP_930322.1| - 2.7e-26 92.4 0.1 3.6e-26 92.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119872315|ref|YP_930322.1| - 4.6e-12 46.3 2.0 1.1e-11 45.1 2.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RE_MamI PF09567.10 gi|119872316|ref|YP_930323.1| - 0.14 11.8 0.1 0.15 11.7 0.1 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease Hjc PF01870.18 gi|119872317|ref|YP_930324.1| - 1.9e-29 101.5 0.1 2.5e-29 101.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.11 gi|119872317|ref|YP_930324.1| - 0.00051 20.5 0.0 0.00076 19.9 0.0 1.3 1 1 0 1 1 1 1 Nuclease-related domain AHJR-like PF18743.1 gi|119872317|ref|YP_930324.1| - 0.002 17.7 0.0 0.0028 17.2 0.0 1.4 1 0 0 1 1 1 1 REase_AHJR-like UPF0102 PF02021.17 gi|119872317|ref|YP_930324.1| - 0.0062 16.7 0.3 0.015 15.5 0.3 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0102 TBP PF00352.21 gi|119872319|ref|YP_930326.1| - 5.2e-63 209.0 0.0 6.1e-31 106.2 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|119872319|ref|YP_930326.1| - 0.0054 16.8 0.0 0.22 11.6 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) Cobl PF09469.10 gi|119872319|ref|YP_930326.1| - 0.079 13.2 0.0 0.2 11.9 0.0 1.6 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain Ribosomal_S25 PF03297.15 gi|119872320|ref|YP_930327.1| - 1.6e-20 73.2 6.4 2e-20 72.9 6.4 1.1 1 0 0 1 1 1 1 S25 ribosomal protein HTH_micro PF17007.5 gi|119872320|ref|YP_930327.1| - 0.0017 17.3 4.1 0.0019 17.1 4.1 1.0 1 0 0 1 1 1 1 HTH-like SpoIIP PF07454.11 gi|119872320|ref|YP_930327.1| - 0.0035 16.8 1.4 0.0041 16.6 1.4 1.0 1 0 0 1 1 1 1 Stage II sporulation protein P (SpoIIP) TrmB PF01978.19 gi|119872320|ref|YP_930327.1| - 0.004 17.0 0.2 0.0079 16.1 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DDRGK PF09756.9 gi|119872320|ref|YP_930327.1| - 0.52 9.9 13.8 2 8.0 13.8 1.7 1 1 0 1 1 1 0 DDRGK domain DUF4829 PF16111.5 gi|119872321|ref|YP_930328.1| - 0.012 16.4 0.7 0.025 15.4 0.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) Phage_rep_org_N PF09681.10 gi|119872321|ref|YP_930328.1| - 0.054 13.4 0.3 0.15 12.0 0.0 1.9 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Ldt_C PF17969.1 gi|119872321|ref|YP_930328.1| - 0.32 11.8 6.8 0.12 13.2 1.6 2.2 1 1 1 2 2 2 0 L,D-transpeptidase C-terminal domain FaeA PF04703.12 gi|119872322|ref|YP_930329.1| - 2e-06 28.1 0.3 2.3e-06 27.9 0.3 1.1 1 0 0 1 1 1 1 FaeA-like protein HTH_9 PF08221.11 gi|119872322|ref|YP_930329.1| - 2e-05 24.6 0.1 2.9e-05 24.1 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR_2 PF12802.7 gi|119872322|ref|YP_930329.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|119872322|ref|YP_930329.1| - 0.0018 17.8 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|119872322|ref|YP_930329.1| - 0.0058 16.4 0.0 0.0076 16.0 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|119872322|ref|YP_930329.1| - 0.0077 16.1 0.2 0.0093 15.8 0.2 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|119872322|ref|YP_930329.1| - 0.0081 16.0 0.3 0.01 15.7 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|119872322|ref|YP_930329.1| - 0.0085 16.2 0.1 0.012 15.8 0.1 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|119872322|ref|YP_930329.1| - 0.019 15.5 0.1 0.025 15.0 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_46 PF15977.5 gi|119872322|ref|YP_930329.1| - 0.025 14.6 0.3 0.048 13.7 0.3 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA binding HTH_DeoR PF08220.12 gi|119872322|ref|YP_930329.1| - 0.037 13.8 0.8 0.058 13.2 0.1 1.6 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Med31 PF05669.12 gi|119872322|ref|YP_930329.1| - 0.054 13.5 0.1 0.067 13.2 0.1 1.1 1 0 0 1 1 1 0 SOH1 Phage_rep_O PF04492.13 gi|119872322|ref|YP_930329.1| - 0.054 14.1 0.1 0.06 13.9 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage replication protein O ACP_syn_III_C PF08541.10 gi|119872323|ref|YP_930330.1| - 2.4e-12 46.8 0.0 1.3e-11 44.5 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|119872323|ref|YP_930330.1| - 3.4e-08 33.2 0.1 5.8e-08 32.4 0.1 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_N PF01154.17 gi|119872323|ref|YP_930330.1| - 1.7e-06 28.0 0.1 3.5e-06 27.0 0.1 1.5 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|119872323|ref|YP_930330.1| - 0.00017 21.4 0.0 0.00045 19.9 0.0 1.7 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|119872323|ref|YP_930330.1| - 0.02 14.7 0.3 0.089 12.7 0.1 2.1 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III OB_aCoA_assoc PF01796.17 gi|119872324|ref|YP_930331.1| - 2.6e-15 56.2 0.1 3.9e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|119872324|ref|YP_930331.1| - 5.3e-10 39.0 0.8 8.1e-10 38.4 0.8 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|119872325|ref|YP_930332.1| - 6.3e-13 48.7 0.0 7.5e-12 45.1 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|119872325|ref|YP_930332.1| - 9.3e-07 28.5 0.0 2.2e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|119872325|ref|YP_930332.1| - 0.00017 21.4 0.2 0.59 10.0 0.0 2.5 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DUF5633 PF18656.1 gi|119872325|ref|YP_930332.1| - 0.0027 17.5 0.2 0.0027 17.5 0.2 2.1 2 0 0 2 2 2 1 Family of unknown function (DUF5633) FrhB_FdhB_N PF04422.13 gi|119872325|ref|YP_930332.1| - 0.013 15.7 0.0 0.039 14.1 0.0 1.8 1 0 0 1 1 1 0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Ketoacyl-synt_C PF02801.22 gi|119872325|ref|YP_930332.1| - 0.042 13.9 0.4 0.51 10.4 0.0 2.6 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain Dodecin PF07311.12 gi|119872325|ref|YP_930332.1| - 0.32 11.3 1.5 0.49 10.7 0.3 1.9 2 0 0 2 2 2 0 Dodecin HMG-CoA_red PF00368.18 gi|119872326|ref|YP_930333.1| - 4.7e-134 447.0 0.8 5.3e-134 446.8 0.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_pol_B PF00136.21 gi|119872328|ref|YP_930335.1| - 1.4e-51 175.7 0.8 3.3e-51 174.4 0.8 1.6 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|119872328|ref|YP_930335.1| - 6.8e-32 110.9 0.1 1.5e-31 109.8 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|119872328|ref|YP_930335.1| - 5.6e-05 22.9 0.0 0.00011 21.9 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|119872328|ref|YP_930335.1| - 0.00024 21.1 0.0 0.00066 19.7 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily RNA_pol_A_bac PF01000.26 gi|119872328|ref|YP_930335.1| - 0.14 12.6 0.5 0.48 10.8 0.2 2.0 2 0 0 2 2 2 0 RNA polymerase Rpb3/RpoA insert domain DUF2286 PF10051.9 gi|119872329|ref|YP_930336.1| - 4.6e-41 139.8 3.2 4.9e-41 139.7 3.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) SpoIIID PF12116.8 gi|119872329|ref|YP_930336.1| - 0.014 15.4 0.5 0.031 14.4 0.3 1.7 2 0 0 2 2 2 0 Stage III sporulation protein D CDP-OH_P_transf PF01066.21 gi|119872330|ref|YP_930337.1| - 2.9e-10 40.8 0.8 2.9e-10 40.8 0.8 2.1 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Methyltrn_RNA_2 PF04013.12 gi|119872331|ref|YP_930338.1| - 1.5e-07 31.3 0.0 2e-07 30.9 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Ribosomal_S26e PF01283.19 gi|119872332|ref|YP_930339.1| - 5.4e-27 94.4 1.8 6e-27 94.2 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zinc_ribbon_15 PF17032.5 gi|119872332|ref|YP_930339.1| - 0.039 14.7 0.1 0.14 13.0 0.1 1.8 1 1 1 2 2 2 0 zinc-ribbon family Lar_restr_allev PF14354.6 gi|119872332|ref|YP_930339.1| - 0.04 14.3 0.5 0.27 11.6 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF5637 PF18687.1 gi|119872332|ref|YP_930339.1| - 0.07 13.1 1.7 0.16 12.0 0.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5637) zf-RING_7 PF02591.15 gi|119872332|ref|YP_930339.1| - 0.26 11.5 2.3 0.33 11.2 0.1 2.2 2 1 0 2 2 2 0 C4-type zinc ribbon domain tRNA-synt_2b PF00587.25 gi|119872334|ref|YP_930341.1| - 2.5e-26 92.7 0.1 4.2e-26 92.0 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|119872334|ref|YP_930341.1| - 1.3e-22 79.8 0.1 2.7e-22 78.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|119872334|ref|YP_930341.1| - 7.4e-09 35.7 0.0 2e-08 34.3 0.0 1.8 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal Lambda_tail_I PF06805.12 gi|119872334|ref|YP_930341.1| - 0.031 14.6 0.1 0.069 13.5 0.1 1.5 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly protein I GCD14 PF08704.10 gi|119872335|ref|YP_930342.1| - 2.9e-34 118.8 0.0 3.9e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|119872335|ref|YP_930342.1| - 4.1e-08 33.2 0.0 5.8e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|119872335|ref|YP_930342.1| - 5e-08 32.9 0.0 7.6e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_11 PF08241.12 gi|119872335|ref|YP_930342.1| - 0.0019 18.8 0.0 0.0078 16.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|119872335|ref|YP_930342.1| - 0.0027 17.3 0.0 0.021 14.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain GCD14_N PF14801.6 gi|119872335|ref|YP_930342.1| - 0.0051 16.6 0.0 0.0091 15.8 0.0 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_25 PF13649.6 gi|119872335|ref|YP_930342.1| - 0.0073 17.0 0.0 0.019 15.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|119872335|ref|YP_930342.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase FtsJ PF01728.19 gi|119872335|ref|YP_930342.1| - 0.085 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase RrnaAD PF00398.20 gi|119872335|ref|YP_930342.1| - 0.12 11.4 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Gpr1_Fun34_YaaH PF01184.19 gi|119872335|ref|YP_930342.1| - 0.15 11.7 0.5 1.3 8.6 0.1 2.3 2 1 1 3 3 3 0 GPR1/FUN34/yaaH family RIO1 PF01163.22 gi|119872337|ref|YP_930344.1| - 1.2e-12 47.8 0.0 1.5e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.14 gi|119872337|ref|YP_930344.1| - 4.6e-11 42.5 0.0 8.2e-11 41.7 0.0 1.5 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|119872337|ref|YP_930344.1| - 9.1e-10 38.3 0.0 1.2e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|119872337|ref|YP_930344.1| - 2.4e-06 27.7 0.0 0.00063 19.7 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|119872337|ref|YP_930344.1| - 1.1e-05 24.8 0.0 2.3e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|119872337|ref|YP_930344.1| - 0.0004 20.1 0.0 0.00051 19.7 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Kinase-PolyVal PF18762.1 gi|119872337|ref|YP_930344.1| - 0.012 15.6 0.0 1.9 8.4 0.0 2.2 2 0 0 2 2 2 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins Choline_kinase PF01633.20 gi|119872337|ref|YP_930344.1| - 0.015 14.9 0.0 0.048 13.2 0.0 1.8 1 1 1 2 2 2 0 Choline/ethanolamine kinase Radical_SAM PF04055.21 gi|119872338|ref|YP_930345.1| - 3.8e-11 43.6 0.1 7.6e-11 42.7 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119872338|ref|YP_930345.1| - 2.1e-08 34.5 0.0 3.9e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119872338|ref|YP_930345.1| - 0.00088 19.4 0.0 0.0025 17.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Zn_Tnp_IS1595 PF12760.7 gi|119872340|ref|YP_930347.1| - 0.049 13.6 1.0 0.13 12.3 1.0 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|119872340|ref|YP_930347.1| - 0.15 11.8 0.6 6.7 6.5 0.0 2.4 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|119872340|ref|YP_930347.1| - 0.16 11.5 1.4 0.31 10.5 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119872340|ref|YP_930347.1| - 1.7 8.5 5.8 8.2 6.2 0.1 2.8 3 0 0 3 3 3 0 Rubredoxin metal binding domain DUF1610 PF07754.11 gi|119872340|ref|YP_930347.1| - 7.7 6.6 8.8 1.4 8.9 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) DHH PF01368.20 gi|119872341|ref|YP_930348.1| - 3.8e-08 33.5 0.1 7.9e-08 32.5 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|119872341|ref|YP_930348.1| - 7.5e-06 26.4 2.0 1.6e-05 25.3 0.4 2.1 2 0 0 2 2 2 1 DHHA1 domain MtrG PF04210.13 gi|119872342|ref|YP_930349.1| - 0.079 12.8 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G Prefoldin_2 PF01920.20 gi|119872343|ref|YP_930350.1| - 5.7e-26 90.5 14.3 7e-26 90.3 14.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit MscS_porin PF12795.7 gi|119872343|ref|YP_930350.1| - 0.0045 16.6 3.3 0.0045 16.6 3.3 2.0 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Com_YlbF PF06133.11 gi|119872343|ref|YP_930350.1| - 0.0046 17.5 10.2 0.0091 16.6 0.7 2.1 2 0 0 2 2 2 1 Control of competence regulator ComK, YlbF/YmcA XkdW PF09636.10 gi|119872343|ref|YP_930350.1| - 0.007 16.5 1.3 0.007 16.5 1.3 2.1 2 0 0 2 2 2 1 XkdW protein HlyD_2 PF12700.7 gi|119872343|ref|YP_930350.1| - 0.022 13.5 3.4 0.026 13.3 3.4 1.0 1 0 0 1 1 1 0 HlyD family secretion protein DUF2408 PF10303.9 gi|119872343|ref|YP_930350.1| - 0.025 15.1 8.9 0.062 13.9 8.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Elongin_A PF06881.11 gi|119872343|ref|YP_930350.1| - 0.026 15.0 6.1 0.032 14.8 6.1 1.1 1 0 0 1 1 1 0 RNA polymerase II transcription factor SIII (Elongin) subunit A HAUS5 PF14817.6 gi|119872343|ref|YP_930350.1| - 0.031 13.1 7.7 0.036 12.8 7.7 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Tho2 PF11262.8 gi|119872343|ref|YP_930350.1| - 0.042 13.1 4.0 0.053 12.7 4.0 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Golgin_A5 PF09787.9 gi|119872343|ref|YP_930350.1| - 0.059 12.8 9.2 0.075 12.5 9.2 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 Enkurin PF13864.6 gi|119872343|ref|YP_930350.1| - 0.078 13.4 0.6 0.078 13.4 0.6 2.5 2 1 0 2 2 2 0 Calmodulin-binding DUF848 PF05852.11 gi|119872343|ref|YP_930350.1| - 0.1 12.7 7.8 0.22 11.6 7.8 1.6 1 1 0 1 1 1 0 Gammaherpesvirus protein of unknown function (DUF848) DUF1640 PF07798.11 gi|119872343|ref|YP_930350.1| - 0.14 12.2 12.6 1.8 8.6 12.5 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) DUF4041 PF13250.6 gi|119872343|ref|YP_930350.1| - 0.14 12.0 1.1 4.2 7.3 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4041) TMCO5 PF14992.6 gi|119872343|ref|YP_930350.1| - 0.15 11.6 11.2 0.17 11.4 11.2 1.0 1 0 0 1 1 1 0 TMCO5 family Utp12 PF04003.12 gi|119872343|ref|YP_930350.1| - 0.15 12.3 3.0 0.49 10.7 0.2 2.4 2 1 1 3 3 3 0 Dip2/Utp12 Family DUF1664 PF07889.12 gi|119872343|ref|YP_930350.1| - 0.16 12.0 1.8 3.4 7.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Occludin_ELL PF07303.13 gi|119872343|ref|YP_930350.1| - 0.17 12.6 3.9 1.1 10.0 0.2 2.2 2 0 0 2 2 2 0 Occludin homology domain DUF4510 PF14971.6 gi|119872343|ref|YP_930350.1| - 0.22 11.9 7.7 0.076 13.4 2.4 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4510) CENP-Q PF13094.6 gi|119872343|ref|YP_930350.1| - 0.25 11.5 10.7 2.4 8.4 0.4 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF3450 PF11932.8 gi|119872343|ref|YP_930350.1| - 0.4 10.0 11.5 0.79 9.0 1.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF948 PF06103.11 gi|119872343|ref|YP_930350.1| - 0.67 10.3 3.2 10 6.5 0.2 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FadA PF09403.10 gi|119872343|ref|YP_930350.1| - 1.1 9.8 13.8 1.1 9.8 3.0 2.2 1 1 1 2 2 2 0 Adhesion protein FadA Baculo_PEP_C PF04513.12 gi|119872343|ref|YP_930350.1| - 1.1 9.3 7.0 83 3.2 7.0 2.1 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Peptidase_S46 PF10459.9 gi|119872343|ref|YP_930350.1| - 1.2 7.7 4.0 1.4 7.5 4.0 1.0 1 0 0 1 1 1 0 Peptidase S46 Nup54 PF13874.6 gi|119872343|ref|YP_930350.1| - 1.3 9.1 12.5 68 3.6 12.5 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DHR10 PF18595.1 gi|119872343|ref|YP_930350.1| - 2 8.5 18.4 0.43 10.6 6.8 2.4 2 1 0 2 2 2 0 Designed helical repeat protein 10 domain DUF883 PF05957.13 gi|119872343|ref|YP_930350.1| - 2.4 8.8 6.7 1.8 9.2 2.6 2.4 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Atg14 PF10186.9 gi|119872343|ref|YP_930350.1| - 2.4 7.2 13.0 3.7 6.5 13.0 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 V_ATPase_I PF01496.19 gi|119872343|ref|YP_930350.1| - 2.5 5.9 4.9 2.9 5.7 4.9 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.11 gi|119872343|ref|YP_930350.1| - 3.3 8.2 9.2 13 6.3 1.9 3.2 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) Cauli_AT PF03233.13 gi|119872343|ref|YP_930350.1| - 3.7 7.5 8.8 8.4 6.3 2.3 2.0 1 1 1 2 2 2 0 Aphid transmission protein Arm-DNA-bind_5 PF17293.2 gi|119872343|ref|YP_930350.1| - 3.8 8.0 11.1 1.1 9.8 3.5 2.3 1 1 1 2 2 2 0 Arm DNA-binding domain Med4 PF10018.9 gi|119872343|ref|YP_930350.1| - 4.8 6.8 14.8 1 9.0 4.1 2.1 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Syntaxin-6_N PF09177.11 gi|119872343|ref|YP_930350.1| - 4.9 7.8 8.0 15 6.2 1.6 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Mod_r PF07200.13 gi|119872343|ref|YP_930350.1| - 5.1 7.2 15.9 1.7 8.7 8.6 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein eIF-4B PF06273.11 gi|119872343|ref|YP_930350.1| - 9.5 5.1 7.1 2.2 7.2 3.4 1.7 1 1 1 2 2 2 0 Plant specific eukaryotic initiation factor 4B Ribosomal_L37ae PF01780.19 gi|119872346|ref|YP_930353.1| - 1.9e-30 104.8 0.3 2.2e-30 104.6 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|119872346|ref|YP_930353.1| - 0.00083 19.3 1.5 0.00083 19.3 1.5 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-C2H2_3 PF13878.6 gi|119872346|ref|YP_930353.1| - 0.0049 16.7 0.2 0.56 10.1 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zf-H2C2_2 PF13465.6 gi|119872346|ref|YP_930353.1| - 0.0069 16.8 1.9 0.6 10.6 0.2 2.4 2 0 0 2 2 2 1 Zinc-finger double domain IBR PF01485.21 gi|119872346|ref|YP_930353.1| - 0.008 16.4 0.1 0.012 15.8 0.1 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Zn_ribbon_SprT PF17283.2 gi|119872346|ref|YP_930353.1| - 0.018 14.9 4.7 1.6 8.7 1.3 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|119872346|ref|YP_930353.1| - 0.037 13.8 2.8 4.2 7.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119872346|ref|YP_930353.1| - 0.038 14.1 0.6 3.8 7.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|119872346|ref|YP_930353.1| - 0.041 13.8 0.3 0.074 13.0 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|119872346|ref|YP_930353.1| - 0.044 13.8 0.4 0.081 13.0 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|119872346|ref|YP_930353.1| - 0.05 13.8 1.5 2.8 8.2 0.2 3.0 3 0 0 3 3 3 0 C4-type zinc ribbon domain C1_1 PF00130.22 gi|119872346|ref|YP_930353.1| - 0.06 13.3 0.9 0.09 12.7 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_10 PF10058.9 gi|119872346|ref|YP_930353.1| - 0.06 13.1 0.6 6.9 6.5 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ACC PF17848.1 gi|119872346|ref|YP_930353.1| - 0.075 13.1 1.2 10 6.3 0.0 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-C4_Topoisom PF01396.19 gi|119872346|ref|YP_930353.1| - 0.11 12.2 5.3 0.44 10.4 0.1 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.6 gi|119872346|ref|YP_930353.1| - 0.11 12.1 4.2 0.33 10.6 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_4 PF13717.6 gi|119872346|ref|YP_930353.1| - 0.12 12.3 3.8 3.7 7.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF1451 PF07295.11 gi|119872346|ref|YP_930353.1| - 0.13 12.3 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF1610 PF07754.11 gi|119872346|ref|YP_930353.1| - 0.15 12.1 1.3 7.2 6.7 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) HypA PF01155.19 gi|119872346|ref|YP_930353.1| - 0.16 12.0 0.1 0.25 11.4 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RanBP PF00641.18 gi|119872346|ref|YP_930353.1| - 0.17 11.3 0.3 0.17 11.3 0.3 1.9 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DUF2225 PF09986.9 gi|119872346|ref|YP_930353.1| - 0.21 11.3 0.2 0.32 10.7 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-RING_4 PF14570.6 gi|119872346|ref|YP_930353.1| - 0.25 11.2 2.3 0.63 9.9 0.2 2.0 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.6 gi|119872346|ref|YP_930353.1| - 0.51 9.7 5.5 0.76 9.2 3.9 2.2 2 1 0 2 2 2 0 Transcription factor zinc-finger zf_C2H2_10 PF18414.1 gi|119872346|ref|YP_930353.1| - 0.53 9.9 3.0 5 6.8 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger UPF0547 PF10571.9 gi|119872346|ref|YP_930353.1| - 0.88 9.7 5.9 5.8 7.1 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|119872346|ref|YP_930353.1| - 1.5 8.6 8.9 1.5 8.6 0.8 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain DUF4379 PF14311.6 gi|119872346|ref|YP_930353.1| - 2.3 8.6 6.8 12 6.4 0.5 3.0 2 1 1 3 3 3 0 Probable Zinc-ribbon domain RNase_PH PF01138.21 gi|119872347|ref|YP_930354.1| - 2.3e-27 96.1 0.0 3.7e-27 95.4 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|119872347|ref|YP_930354.1| - 4.8e-11 42.5 0.0 1.1e-10 41.3 0.0 1.7 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Aida_C2 PF14186.6 gi|119872347|ref|YP_930354.1| - 0.061 13.0 0.0 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 Cytoskeletal adhesion RNase_PH PF01138.21 gi|119872348|ref|YP_930355.1| - 4.9e-35 120.9 0.0 7.3e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|119872348|ref|YP_930355.1| - 1.6e-15 56.9 0.0 3.9e-15 55.6 0.0 1.7 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 KH_6 PF15985.5 gi|119872349|ref|YP_930356.1| - 1.4e-12 47.7 0.4 2.9e-12 46.7 0.4 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|119872349|ref|YP_930356.1| - 5.8e-06 26.0 0.3 1.2e-05 25.0 0.3 1.5 1 0 0 1 1 1 1 KH domain KH_2 PF07650.17 gi|119872349|ref|YP_930356.1| - 0.0014 18.4 1.2 0.0035 17.2 1.2 1.7 1 0 0 1 1 1 1 KH domain ECR1_N PF14382.6 gi|119872349|ref|YP_930356.1| - 0.0067 16.2 0.1 0.029 14.2 0.0 2.1 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.23 gi|119872349|ref|YP_930356.1| - 0.0084 16.4 2.2 0.012 16.0 0.1 2.3 2 1 0 2 2 2 1 S1 RNA binding domain KH_4 PF13083.6 gi|119872349|ref|YP_930356.1| - 0.0099 15.7 0.2 0.071 13.0 0.2 2.4 1 1 0 1 1 1 1 KH domain ATPgrasp_YheCD PF14398.6 gi|119872349|ref|YP_930356.1| - 0.16 11.2 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 YheC/D like ATP-grasp SBDS PF01172.18 gi|119872350|ref|YP_930357.1| - 2.3e-22 78.8 0.1 4.9e-22 77.8 0.1 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|119872350|ref|YP_930357.1| - 8.7e-20 70.9 0.8 1.3e-19 70.3 0.8 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.11 gi|119872350|ref|YP_930357.1| - 0.08 12.8 0.0 0.44 10.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) ThiP_synth PF10120.9 gi|119872351|ref|YP_930358.1| - 2.4e-28 98.8 0.4 4.6e-28 97.9 0.4 1.5 1 1 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|119872351|ref|YP_930358.1| - 3.4e-05 23.7 0.0 7.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|119872351|ref|YP_930358.1| - 0.0014 18.6 0.2 0.0048 16.9 0.1 2.0 1 1 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.6 gi|119872351|ref|YP_930358.1| - 0.0017 18.1 0.0 0.0048 16.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain XAF1_C PF18608.1 gi|119872351|ref|YP_930358.1| - 0.013 15.1 1.3 0.025 14.1 0.0 2.0 2 0 0 2 2 2 0 XIAP-associated factor 1 C-terminal domain HTH_1 PF00126.27 gi|119872351|ref|YP_930358.1| - 0.015 15.3 0.0 0.053 13.5 0.0 2.0 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|119872351|ref|YP_930358.1| - 0.064 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_26 PF13443.6 gi|119872351|ref|YP_930358.1| - 0.094 13.2 0.0 0.19 12.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF3865 PF12981.7 gi|119872351|ref|YP_930358.1| - 0.13 12.2 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3865) ABC_tran PF00005.27 gi|119872352|ref|YP_930359.1| - 0.56 10.7 2.6 2.2 8.8 1.1 2.2 2 1 0 2 2 2 0 ABC transporter RNA_binding PF01877.17 gi|119872354|ref|YP_930361.1| - 2.4e-25 89.1 0.1 3.1e-25 88.7 0.1 1.1 1 0 0 1 1 1 1 RNA binding DUF150_C PF17384.2 gi|119872354|ref|YP_930361.1| - 0.016 15.3 0.0 0.17 12.0 0.0 2.0 1 1 1 2 2 2 0 RimP C-terminal SH3 domain Proteasome PF00227.26 gi|119872356|ref|YP_930363.1| - 5.5e-58 195.6 0.0 1.3e-57 194.3 0.0 1.7 2 1 0 2 2 2 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|119872356|ref|YP_930363.1| - 1e-12 47.4 0.3 3.7e-12 45.7 0.1 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature Topo-VIb_trans PF09239.11 gi|119872357|ref|YP_930364.1| - 1.4e-59 200.5 0.0 2.3e-59 199.8 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|119872357|ref|YP_930364.1| - 6.2e-14 52.4 0.0 1.1e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|119872357|ref|YP_930364.1| - 1.2e-10 41.3 0.0 2.4e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Oxidored_q4 PF00507.19 gi|119872359|ref|YP_930366.1| - 1.1e-06 28.7 0.3 3.5e-06 27.1 0.0 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EamA PF00892.20 gi|119872360|ref|YP_930367.1| - 2.4e-06 27.7 38.9 0.00023 21.4 14.3 2.3 2 0 0 2 2 2 2 EamA-like transporter family CLP1_P PF16575.5 gi|119872361|ref|YP_930368.1| - 3e-32 111.9 0.0 4.2e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|119872361|ref|YP_930368.1| - 5.9e-06 26.4 0.0 9.1e-06 25.8 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|119872361|ref|YP_930368.1| - 8.3e-05 22.4 0.0 0.00014 21.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|119872361|ref|YP_930368.1| - 0.0054 16.2 0.1 0.0099 15.3 0.1 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase IstB_IS21 PF01695.17 gi|119872361|ref|YP_930368.1| - 0.0069 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein SRP54 PF00448.22 gi|119872361|ref|YP_930368.1| - 0.0071 16.0 1.2 0.18 11.4 0.4 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|119872361|ref|YP_930368.1| - 0.029 13.4 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_31 PF13614.6 gi|119872361|ref|YP_930368.1| - 0.04 13.8 0.0 0.072 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119872361|ref|YP_930368.1| - 0.06 13.1 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0128 PF03673.13 gi|119872361|ref|YP_930368.1| - 0.074 12.5 0.0 0.2 11.1 0.0 1.7 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0128) DUF87 PF01935.17 gi|119872361|ref|YP_930368.1| - 0.49 10.4 2.7 0.62 10.1 0.9 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|119872362|ref|YP_930369.1| - 1.8e-19 70.1 0.0 3e-19 69.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|119872362|ref|YP_930369.1| - 2.9e-18 66.0 0.0 4.4e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|119872362|ref|YP_930369.1| - 5.2e-09 36.0 0.0 1.1e-08 34.9 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|119872362|ref|YP_930369.1| - 2.1e-07 31.3 0.0 5.8e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|119872362|ref|YP_930369.1| - 6.1e-06 25.8 0.1 0.002 17.5 0.1 2.5 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|119872362|ref|YP_930369.1| - 6.9e-06 25.3 0.0 1.1e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|119872362|ref|YP_930369.1| - 1.3e-05 25.7 0.0 3.5e-05 24.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|119872362|ref|YP_930369.1| - 6.7e-05 22.7 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|119872362|ref|YP_930369.1| - 9.8e-05 22.2 1.2 0.15 11.8 0.2 2.3 1 1 1 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|119872362|ref|YP_930369.1| - 0.00024 21.1 0.0 0.00073 19.5 0.0 1.9 2 0 0 2 2 2 1 NACHT domain Sigma54_activ_2 PF14532.6 gi|119872362|ref|YP_930369.1| - 0.0031 17.6 0.0 0.015 15.4 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|119872362|ref|YP_930369.1| - 0.0046 17.4 0.2 0.031 14.7 0.2 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|119872362|ref|YP_930369.1| - 0.0076 16.3 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|119872362|ref|YP_930369.1| - 0.014 15.4 0.0 0.032 14.2 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|119872362|ref|YP_930369.1| - 0.019 14.3 0.0 0.082 12.2 0.0 2.0 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|119872362|ref|YP_930369.1| - 0.056 14.0 0.1 0.22 12.0 0.0 2.1 3 1 0 3 3 2 0 AAA domain Bac_DnaA PF00308.18 gi|119872362|ref|YP_930369.1| - 0.066 13.0 0.0 4.2 7.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_19 PF13245.6 gi|119872362|ref|YP_930369.1| - 0.071 13.4 0.9 4.8 7.5 0.9 2.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|119872362|ref|YP_930369.1| - 0.089 12.7 0.0 0.82 9.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|119872362|ref|YP_930369.1| - 0.089 13.0 0.0 1 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|119872362|ref|YP_930369.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|119872362|ref|YP_930369.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain ABC_tran PF00005.27 gi|119872362|ref|YP_930369.1| - 0.14 12.7 0.2 0.35 11.4 0.2 1.6 1 0 0 1 1 1 0 ABC transporter RsgA_GTPase PF03193.16 gi|119872362|ref|YP_930369.1| - 0.16 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|119872362|ref|YP_930369.1| - 0.17 11.4 0.1 0.62 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|119872362|ref|YP_930369.1| - 0.18 12.1 0.0 0.35 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain VWA_2 PF13519.6 gi|119872363|ref|YP_930370.1| - 1.9e-11 44.5 0.0 2.2e-09 37.9 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|119872363|ref|YP_930370.1| - 3.4e-07 30.3 0.0 6.5e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|119872363|ref|YP_930370.1| - 1.7e-06 28.4 0.0 4e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|119872363|ref|YP_930370.1| - 0.0005 19.5 0.1 0.0021 17.5 0.1 2.0 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein ETF_alpha PF00766.19 gi|119872363|ref|YP_930370.1| - 0.04 13.9 0.0 3.5 7.7 0.0 3.0 3 1 0 3 3 3 0 Electron transfer flavoprotein FAD-binding domain DNA_primase_lrg PF04104.14 gi|119872364|ref|YP_930371.1| - 8.1e-34 117.2 0.0 1.8e-33 116.1 0.0 1.5 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit AGOG PF09171.10 gi|119872365|ref|YP_930372.1| - 2.7e-70 236.5 0.0 3.3e-70 236.2 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase DUF1965 PF09248.10 gi|119872365|ref|YP_930372.1| - 0.01 15.6 0.1 0.021 14.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1965) DUF5039 PF16442.5 gi|119872365|ref|YP_930372.1| - 0.054 13.0 0.2 0.1 12.1 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5039) DUF126 PF01989.16 gi|119872366|ref|YP_930373.1| - 3.2e-21 74.9 0.1 5.6e-21 74.1 0.1 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|119872367|ref|YP_930374.1| - 4e-83 279.4 0.0 4.4e-83 279.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.16 gi|119872368|ref|YP_930375.1| - 3.3e-73 246.9 0.1 4e-73 246.6 0.1 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alba PF01918.21 gi|119872369|ref|YP_930376.1| - 5.4e-16 58.2 0.9 5.4e-16 58.2 0.9 1.4 2 0 0 2 2 2 1 Alba Rpp20 PF12328.8 gi|119872369|ref|YP_930376.1| - 0.023 14.7 1.6 0.057 13.4 1.4 1.8 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Phage_SSB PF16773.5 gi|119872369|ref|YP_930376.1| - 0.069 13.2 0.2 0.083 13.0 0.2 1.2 1 0 0 1 1 1 0 Lactococcus phage single-stranded DNA binding protein HTH_45 PF14947.6 gi|119872370|ref|YP_930377.1| - 0.0072 16.3 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|119872370|ref|YP_930377.1| - 0.012 15.5 0.6 0.052 13.4 0.1 2.2 2 1 0 2 2 2 0 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|119872370|ref|YP_930377.1| - 0.019 14.8 0.2 0.039 13.8 0.2 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119872370|ref|YP_930377.1| - 0.047 13.8 0.5 0.086 12.9 0.5 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|119872370|ref|YP_930377.1| - 0.047 13.6 0.1 0.16 12.0 0.1 1.9 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|119872370|ref|YP_930377.1| - 0.12 12.9 0.1 0.23 12.0 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain PrmA PF06325.13 gi|119872371|ref|YP_930378.1| - 6.5e-05 22.5 0.0 8.4e-05 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|119872371|ref|YP_930378.1| - 0.0056 17.4 0.0 0.011 16.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|119872371|ref|YP_930378.1| - 0.0086 16.0 0.1 0.012 15.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872371|ref|YP_930378.1| - 0.0094 16.6 0.1 0.022 15.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872371|ref|YP_930378.1| - 0.14 12.0 0.2 0.26 11.1 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|119872371|ref|YP_930378.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PhoU PF01895.19 gi|119872372|ref|YP_930379.1| - 3.9e-19 68.9 6.8 8e-19 67.9 4.7 2.3 2 0 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|119872372|ref|YP_930379.1| - 1.2e-10 41.1 0.4 4.4e-10 39.3 0.4 2.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|119872372|ref|YP_930379.1| - 0.015 15.1 0.1 0.065 13.0 0.0 2.1 2 0 0 2 2 2 0 Translation initiation factor 1A / IF-1 TP6A_N PF04406.14 gi|119872373|ref|YP_930380.1| - 1.9e-21 75.8 0.1 3.7e-21 74.9 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|119872373|ref|YP_930380.1| - 0.005 16.8 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) FliH PF02108.16 gi|119872374|ref|YP_930381.1| - 0.0054 16.8 0.4 0.013 15.6 0.4 1.7 1 1 0 1 1 1 1 Flagellar assembly protein FliH PSK_trans_fac PF07704.11 gi|119872374|ref|YP_930381.1| - 0.0099 16.6 0.3 0.0099 16.6 0.3 2.3 2 1 0 2 2 2 1 Rv0623-like transcription factor DUF2610 PF11020.8 gi|119872374|ref|YP_930381.1| - 0.15 12.0 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF2610) Flavi_capsid PF01003.19 gi|119872378|ref|YP_930385.1| - 0.02 14.6 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Flavivirus capsid protein C CbiA PF01656.23 gi|119872379|ref|YP_930386.1| - 3e-06 27.3 0.0 4.8e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|119872379|ref|YP_930386.1| - 0.0018 18.3 1.0 0.0043 17.0 0.1 2.0 3 0 0 3 3 3 1 AAA domain ParA PF10609.9 gi|119872379|ref|YP_930386.1| - 0.022 14.2 0.0 0.049 13.1 0.0 1.6 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Imm52 PF15579.6 gi|119872379|ref|YP_930386.1| - 0.14 12.0 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 Immunity protein 52 T2SSE PF00437.20 gi|119872380|ref|YP_930387.1| - 1.9e-12 46.9 0.0 3.2e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_7 PF12775.7 gi|119872380|ref|YP_930387.1| - 0.0078 15.7 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|119872380|ref|YP_930387.1| - 0.016 15.4 0.0 0.042 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119872380|ref|YP_930387.1| - 0.11 12.8 0.0 0.19 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|119872380|ref|YP_930387.1| - 0.13 11.2 0.0 0.21 10.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.6 gi|119872380|ref|YP_930387.1| - 0.19 11.5 0.0 0.37 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PKD PF00801.20 gi|119872384|ref|YP_930391.1| - 0.013 15.3 0.3 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 PKD domain PQQ PF01011.21 gi|119872384|ref|YP_930391.1| - 0.071 13.1 0.1 0.34 10.9 0.0 2.2 3 0 0 3 3 3 0 PQQ enzyme repeat SOGA PF11365.8 gi|119872385|ref|YP_930392.1| - 0.0071 17.5 11.8 0.023 15.8 2.4 2.1 1 1 1 2 2 2 2 Protein SOGA LRRFIP PF09738.9 gi|119872385|ref|YP_930392.1| - 0.014 14.9 7.0 0.018 14.5 7.0 1.1 1 0 0 1 1 1 0 LRRFIP family Jnk-SapK_ap_N PF09744.9 gi|119872385|ref|YP_930392.1| - 0.075 13.3 10.5 0.11 12.7 10.5 1.2 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Gram_pos_anchor PF00746.21 gi|119872385|ref|YP_930392.1| - 0.092 12.7 0.2 0.17 11.9 0.2 1.4 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF4201 PF13870.6 gi|119872385|ref|YP_930392.1| - 0.22 11.2 15.0 0.36 10.5 15.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) FapA PF03961.13 gi|119872385|ref|YP_930392.1| - 0.49 8.9 8.2 0.97 8.0 8.2 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A bZIP_1 PF00170.21 gi|119872385|ref|YP_930392.1| - 0.6 10.2 17.7 2.7 8.2 5.6 3.2 3 0 0 3 3 3 0 bZIP transcription factor DUF641 PF04859.12 gi|119872385|ref|YP_930392.1| - 0.65 10.3 6.9 1.7 9.0 6.9 1.7 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) Exonuc_VII_L PF02601.15 gi|119872385|ref|YP_930392.1| - 1.5 8.3 5.4 2.1 7.8 5.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit APG6_N PF17675.1 gi|119872385|ref|YP_930392.1| - 3.4 8.2 14.4 5.4 7.6 14.4 1.3 1 0 0 1 1 1 0 Apg6 coiled-coil region Nsp1_C PF05064.13 gi|119872385|ref|YP_930392.1| - 3.9 7.3 10.4 32 4.4 10.4 2.5 1 1 0 1 1 1 0 Nsp1-like C-terminal region RVT_thumb PF06817.14 gi|119872388|ref|YP_930395.1| - 0.2 11.5 0.4 0.41 10.5 0.0 1.6 2 0 0 2 2 2 0 Reverse transcriptase thumb domain Cys_Met_Meta_PP PF01053.20 gi|119872393|ref|YP_930400.1| - 9.7e-118 393.0 0.0 1.1e-117 392.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|119872393|ref|YP_930400.1| - 0.0002 20.4 0.0 0.00026 20.1 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V TrkA_C PF02080.21 gi|119872394|ref|YP_930401.1| - 5.7e-10 38.9 0.3 2.1e-09 37.1 0.1 2.1 3 0 0 3 3 3 1 TrkA-C domain TrkA_N PF02254.18 gi|119872394|ref|YP_930401.1| - 0.00011 22.4 0.0 0.00022 21.5 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain Glyco_transf_4 PF13439.6 gi|119872394|ref|YP_930401.1| - 0.019 15.0 0.0 0.041 13.9 0.0 1.4 1 1 0 1 1 1 0 Glycosyltransferase Family 4 KH_1 PF00013.29 gi|119872394|ref|YP_930401.1| - 0.031 14.1 0.2 0.1 12.4 0.1 2.0 2 0 0 2 2 2 0 KH domain DUF4350 PF14258.6 gi|119872394|ref|YP_930401.1| - 0.071 13.5 0.1 2.7 8.5 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4350) SIS PF01380.22 gi|119872394|ref|YP_930401.1| - 0.1 12.4 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 SIS domain MS_channel PF00924.18 gi|119872395|ref|YP_930402.1| - 8e-10 38.6 0.0 1.4e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel SMC_N PF02463.19 gi|119872396|ref|YP_930403.1| - 5.2e-19 68.6 0.0 1.2e-18 67.3 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119872396|ref|YP_930403.1| - 3e-14 53.5 11.2 6.5e-10 39.3 3.2 3.0 1 1 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|119872396|ref|YP_930403.1| - 3.7e-12 47.2 10.4 3.7e-12 47.2 10.4 5.2 2 2 0 3 3 2 1 AAA domain AAA_21 PF13304.6 gi|119872396|ref|YP_930403.1| - 6.8e-10 39.2 0.4 8.2e-06 25.8 0.1 2.8 2 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119872396|ref|YP_930403.1| - 1.6e-05 24.6 0.0 4.5e-05 23.1 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|119872396|ref|YP_930403.1| - 0.00039 20.9 3.3 0.15 12.5 0.0 3.9 3 2 0 3 3 3 1 ABC transporter GAS PF13851.6 gi|119872396|ref|YP_930403.1| - 0.00046 19.6 53.7 0.004 16.5 8.9 5.1 3 2 1 4 4 4 2 Growth-arrest specific micro-tubule binding Img2 PF05046.14 gi|119872396|ref|YP_930403.1| - 0.0026 18.0 3.1 0.21 11.9 0.0 3.7 3 0 0 3 3 3 1 Mitochondrial large subunit ribosomal protein (Img2) Baculo_PEP_C PF04513.12 gi|119872396|ref|YP_930403.1| - 0.004 17.2 8.1 1.6 8.8 0.7 5.0 2 2 2 5 5 5 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4349 PF14257.6 gi|119872396|ref|YP_930403.1| - 0.0091 15.5 3.9 0.0091 15.5 3.9 5.8 4 2 2 6 6 6 1 Domain of unknown function (DUF4349) AAA_27 PF13514.6 gi|119872396|ref|YP_930403.1| - 0.014 15.0 0.1 0.014 15.0 0.1 4.4 4 1 0 4 4 4 0 AAA domain T3SSipB PF16535.5 gi|119872396|ref|YP_930403.1| - 0.039 14.4 10.1 1.2 9.6 2.0 3.5 1 1 1 2 2 2 0 Type III cell invasion protein SipB ApoO PF09769.9 gi|119872396|ref|YP_930403.1| - 0.041 13.8 2.8 1.4 8.9 0.5 3.7 3 1 0 3 3 3 0 Apolipoprotein O PK_C PF02887.16 gi|119872396|ref|YP_930403.1| - 0.055 13.7 0.0 0.2 11.9 0.0 1.9 1 0 0 1 1 1 0 Pyruvate kinase, alpha/beta domain NPV_P10 PF05531.12 gi|119872396|ref|YP_930403.1| - 0.075 13.5 8.4 2.9 8.4 0.1 5.5 4 1 1 5 5 4 0 Nucleopolyhedrovirus P10 protein DNA_ligase_ZBD PF03119.16 gi|119872396|ref|YP_930403.1| - 0.085 12.9 0.1 0.22 11.6 0.1 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.14 gi|119872396|ref|YP_930403.1| - 0.1 12.5 0.0 0.1 12.5 0.0 4.8 6 0 0 6 6 3 0 Rad50 zinc hook motif Mod_r PF07200.13 gi|119872396|ref|YP_930403.1| - 0.18 11.9 40.4 0.53 10.4 8.0 4.5 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Occludin_ELL PF07303.13 gi|119872396|ref|YP_930403.1| - 0.19 12.5 34.1 0.95 10.2 1.2 5.8 4 2 1 5 5 5 0 Occludin homology domain Effector_1 PF04518.12 gi|119872396|ref|YP_930403.1| - 0.3 10.2 13.0 0.069 12.3 2.3 3.1 2 1 0 2 2 2 0 Effector from type III secretion system DUF1664 PF07889.12 gi|119872396|ref|YP_930403.1| - 0.57 10.2 25.9 0.043 13.9 1.8 5.3 3 2 3 6 6 6 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|119872396|ref|YP_930403.1| - 1.1 9.6 12.3 5.1 7.4 0.1 5.2 3 2 2 5 5 4 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|119872396|ref|YP_930403.1| - 1.3 9.4 40.8 0.12 12.7 2.6 6.8 4 3 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.11 gi|119872396|ref|YP_930403.1| - 1.5 8.7 36.2 0.14 12.0 3.9 6.1 3 2 3 6 6 6 0 Phage minor structural protein GP20 Noelin-1 PF12308.8 gi|119872396|ref|YP_930403.1| - 1.5 8.9 23.1 1.3 9.0 0.1 5.5 3 2 2 6 6 5 0 Neurogenesis glycoprotein AAA_25 PF13481.6 gi|119872396|ref|YP_930403.1| - 2.3 7.7 4.5 5.9 6.4 0.0 3.2 4 0 0 4 4 3 0 AAA domain DUF2730 PF10805.8 gi|119872396|ref|YP_930403.1| - 2.6 8.2 23.6 0.17 12.0 2.3 5.0 4 1 0 4 4 4 0 Protein of unknown function (DUF2730) Dak2 PF02734.17 gi|119872396|ref|YP_930403.1| - 4.1 7.3 5.9 6.8 6.6 0.1 3.5 3 1 1 4 4 4 0 DAK2 domain EAP30 PF04157.16 gi|119872396|ref|YP_930403.1| - 5.6 6.2 9.8 1.9e+02 1.2 9.4 2.7 1 1 0 1 1 1 0 EAP30/Vps36 family DASH_Dam1 PF08653.10 gi|119872396|ref|YP_930403.1| - 7.8 6.4 10.2 16 5.3 0.2 5.0 5 1 1 6 6 4 0 DASH complex subunit Dam1 Sec34 PF04136.15 gi|119872396|ref|YP_930403.1| - 9.1 6.1 26.4 0.23 11.3 3.7 5.5 5 3 1 6 6 5 0 Sec34-like family SpoIIID PF12116.8 gi|119872398|ref|YP_930405.1| - 0.0065 16.5 0.1 0.013 15.5 0.0 1.5 2 0 0 2 2 2 1 Stage III sporulation protein D Prefoldin_2 PF01920.20 gi|119872398|ref|YP_930405.1| - 0.082 12.9 1.6 5.3 7.0 0.8 2.3 2 0 0 2 2 2 0 Prefoldin subunit Actin PF00022.19 gi|119872399|ref|YP_930406.1| - 2.8e-08 32.8 0.0 3.1e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 Actin Orbi_VP7 PF00897.17 gi|119872399|ref|YP_930406.1| - 0.13 11.2 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Orbivirus inner capsid protein VP7 AP_endonuc_2_N PF07582.12 gi|119872399|ref|YP_930406.1| - 0.13 12.0 0.1 0.41 10.4 0.1 1.8 1 0 0 1 1 1 0 AP endonuclease family 2 C terminus Arcadin_1 PF18653.1 gi|119872400|ref|YP_930407.1| - 2.6e-38 130.5 0.1 2.8e-38 130.4 0.1 1.0 1 0 0 1 1 1 1 Arcadin 1 Nitroreductase PF00881.24 gi|119872401|ref|YP_930408.1| - 1.2e-22 80.8 2.1 8.7e-22 78.0 2.1 2.0 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|119872401|ref|YP_930408.1| - 5.1e-07 29.5 0.0 0.0071 15.9 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase zf-C2HC_2 PF13913.6 gi|119872402|ref|YP_930409.1| - 1e-05 25.3 4.2 0.002 18.0 0.3 2.2 2 0 0 2 2 2 2 zinc-finger of a C2HC-type zinc_ribbon_4 PF13717.6 gi|119872402|ref|YP_930409.1| - 7.6e-05 22.5 4.5 0.00059 19.7 4.5 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf_UBZ PF18439.1 gi|119872402|ref|YP_930409.1| - 0.00012 21.6 0.7 0.021 14.4 0.0 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 gi|119872402|ref|YP_930409.1| - 0.00014 21.9 2.1 0.26 11.3 0.1 2.1 1 1 1 2 2 2 2 CpXC protein Cys_rich_CPXG PF14255.6 gi|119872402|ref|YP_930409.1| - 0.00036 20.4 2.1 0.025 14.5 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-ribbon_3 PF13248.6 gi|119872402|ref|YP_930409.1| - 0.00048 19.4 1.7 0.4 10.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Cys_rich_KTR PF14205.6 gi|119872402|ref|YP_930409.1| - 0.0013 18.5 0.2 0.0015 18.3 0.2 1.2 1 0 0 1 1 1 1 Cysteine-rich KTR HypA PF01155.19 gi|119872402|ref|YP_930409.1| - 0.002 18.1 0.0 0.0021 18.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|119872402|ref|YP_930409.1| - 0.0022 17.9 0.6 0.11 12.5 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid Rad50_zn_hook PF04423.14 gi|119872402|ref|YP_930409.1| - 0.0029 17.4 0.5 0.6 10.0 0.0 2.2 2 0 0 2 2 2 1 Rad50 zinc hook motif zf-Di19 PF05605.12 gi|119872402|ref|YP_930409.1| - 0.0031 17.8 2.4 0.14 12.4 0.2 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 gi|119872402|ref|YP_930409.1| - 0.0034 17.7 2.6 1.6 9.3 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain zf-RING_7 PF02591.15 gi|119872402|ref|YP_930409.1| - 0.004 17.3 0.6 2.7 8.3 0.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain Trm112p PF03966.16 gi|119872402|ref|YP_930409.1| - 0.0042 17.6 2.1 0.1 13.2 2.1 2.2 1 1 0 1 1 1 1 Trm112p-like protein DZR PF12773.7 gi|119872402|ref|YP_930409.1| - 0.0044 17.0 0.1 0.0084 16.1 0.1 1.5 1 1 0 1 1 1 1 Double zinc ribbon zf-AN1 PF01428.16 gi|119872402|ref|YP_930409.1| - 0.0051 17.0 2.5 1 9.6 0.2 2.1 2 0 0 2 2 2 1 AN1-like Zinc finger YacG PF03884.14 gi|119872402|ref|YP_930409.1| - 0.0057 16.4 1.0 1.5 8.6 0.1 2.2 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG IBR PF01485.21 gi|119872402|ref|YP_930409.1| - 0.006 16.8 1.8 0.57 10.5 0.1 2.0 1 1 1 2 2 2 2 IBR domain, a half RING-finger domain Elf1 PF05129.13 gi|119872402|ref|YP_930409.1| - 0.0067 16.4 0.1 0.011 15.8 0.1 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like TackOD1 PF18551.1 gi|119872402|ref|YP_930409.1| - 0.0099 15.6 0.1 0.012 15.3 0.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 zf-CHCC PF10276.9 gi|119872402|ref|YP_930409.1| - 0.012 15.7 1.3 1.1 9.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_5 PF13719.6 gi|119872402|ref|YP_930409.1| - 0.012 15.3 1.3 3.8 7.4 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain T4_baseplate PF12322.8 gi|119872402|ref|YP_930409.1| - 0.013 15.0 0.6 2.5 7.5 0.2 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein FYDLN_acid PF09538.10 gi|119872402|ref|YP_930409.1| - 0.017 15.8 1.3 3.4 8.4 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) C1_4 PF07975.12 gi|119872402|ref|YP_930409.1| - 0.023 14.9 0.1 0.54 10.5 0.0 2.0 2 0 0 2 2 2 0 TFIIH C1-like domain zf-C2H2 PF00096.26 gi|119872402|ref|YP_930409.1| - 0.025 15.0 5.9 0.21 12.1 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.6 gi|119872402|ref|YP_930409.1| - 0.026 14.2 3.9 1.2 8.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|119872402|ref|YP_930409.1| - 0.026 15.2 0.6 3.8 8.2 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Lar_restr_allev PF14354.6 gi|119872402|ref|YP_930409.1| - 0.027 14.8 0.8 0.037 14.4 0.8 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|119872402|ref|YP_930409.1| - 0.03 14.4 2.0 0.086 13.0 1.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|119872402|ref|YP_930409.1| - 0.033 14.3 3.2 1.2 9.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_9 PF14369.6 gi|119872402|ref|YP_930409.1| - 0.034 14.4 4.5 1.6 9.0 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon Sgf11 PF08209.11 gi|119872402|ref|YP_930409.1| - 0.039 13.5 2.5 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-DNL PF05180.12 gi|119872402|ref|YP_930409.1| - 0.042 13.8 0.6 0.057 13.4 0.6 1.3 1 0 0 1 1 1 0 DNL zinc finger zinc-ribbons_6 PF07191.12 gi|119872402|ref|YP_930409.1| - 0.06 13.3 0.3 0.17 11.9 0.3 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-Sec23_Sec24 PF04810.15 gi|119872402|ref|YP_930409.1| - 0.08 13.0 1.7 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn_Tnp_IS1595 PF12760.7 gi|119872402|ref|YP_930409.1| - 0.093 12.7 5.5 2.7 8.0 0.5 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-DNA_Pol PF08996.10 gi|119872402|ref|YP_930409.1| - 0.094 12.5 1.0 9.2 6.0 1.6 2.0 1 1 1 2 2 2 0 DNA Polymerase alpha zinc finger A2L_zn_ribbon PF08792.10 gi|119872402|ref|YP_930409.1| - 0.11 12.3 1.8 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Anti-TRAP PF15777.5 gi|119872402|ref|YP_930409.1| - 0.11 12.5 0.5 0.2 11.6 0.5 1.6 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2H2_4 PF13894.6 gi|119872402|ref|YP_930409.1| - 0.11 13.3 3.6 2.5 9.2 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF35_N PF12172.8 gi|119872402|ref|YP_930409.1| - 0.12 12.3 1.4 4.5 7.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|119872402|ref|YP_930409.1| - 0.13 11.8 5.6 2.9 7.5 5.5 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2256 PF10013.9 gi|119872402|ref|YP_930409.1| - 0.14 12.3 2.4 8.3 6.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF983 PF06170.12 gi|119872402|ref|YP_930409.1| - 0.14 12.6 0.1 5 7.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) FANCL_C PF11793.8 gi|119872402|ref|YP_930409.1| - 0.22 11.8 3.2 0.25 11.6 0.2 2.0 1 1 1 2 2 2 0 FANCL C-terminal domain zf-TFIIB PF13453.6 gi|119872402|ref|YP_930409.1| - 0.31 10.4 2.2 9.4 5.7 0.2 2.5 3 0 0 3 3 3 0 Transcription factor zinc-finger TFIIS_C PF01096.18 gi|119872402|ref|YP_930409.1| - 0.32 10.9 3.8 8.5 6.3 0.4 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf_C2H2_10 PF18414.1 gi|119872402|ref|YP_930409.1| - 2.5 7.7 5.7 1.5 8.4 0.4 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger HSP20 PF00011.21 gi|119872403|ref|YP_930410.1| - 3.5e-10 39.9 0.0 4.3e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|119872403|ref|YP_930410.1| - 1.9e-08 33.8 0.2 3e-08 33.1 0.2 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CofC PF01983.16 gi|119872403|ref|YP_930410.1| - 0.082 12.1 0.1 0.1 11.8 0.1 1.1 1 0 0 1 1 1 0 Guanylyl transferase CofC like B12-binding PF02310.19 gi|119872404|ref|YP_930411.1| - 0.026 14.6 0.1 0.04 14.0 0.1 1.3 1 0 0 1 1 1 0 B12 binding domain tRNA_int_endo PF01974.17 gi|119872405|ref|YP_930412.1| - 2.3e-26 91.7 0.4 3.9e-26 90.9 0.1 1.5 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|119872405|ref|YP_930412.1| - 3.5e-20 71.4 1.1 5e-20 70.9 1.1 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|119872405|ref|YP_930412.1| - 0.002 18.3 0.0 0.0051 17.0 0.0 1.7 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term Baculo_LEF-3 PF05847.11 gi|119872405|ref|YP_930412.1| - 0.17 11.0 0.1 0.23 10.6 0.1 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus late expression factor 3 (LEF-3) CDC48_N PF02359.18 gi|119872406|ref|YP_930413.1| - 0.024 14.8 0.3 0.075 13.2 0.3 1.8 1 1 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain HGTP_anticodon PF03129.20 gi|119872407|ref|YP_930414.1| - 3.3e-19 68.8 0.1 8.8e-19 67.5 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119872407|ref|YP_930414.1| - 3.4e-06 27.2 0.0 3.8e-05 23.7 0.0 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_2 PF13240.6 gi|119872407|ref|YP_930414.1| - 0.13 12.1 0.8 7.6 6.4 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|119872407|ref|YP_930414.1| - 0.15 12.1 1.4 9.8 6.3 0.0 2.8 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf_C2H2_13 PF18508.1 gi|119872407|ref|YP_930414.1| - 0.24 11.0 0.4 11 5.8 0.1 3.1 3 0 0 3 3 3 0 Zinc finger domain Zn-ribbon_8 PF09723.10 gi|119872407|ref|YP_930414.1| - 0.31 11.2 2.8 4 7.6 0.0 2.7 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119872407|ref|YP_930414.1| - 0.99 9.4 2.6 9.5 6.2 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872407|ref|YP_930414.1| - 1.8 8.1 5.4 3.2 7.3 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Cation_efflux PF01545.21 gi|119872408|ref|YP_930415.1| - 2.4e-20 73.1 18.1 3.2e-20 72.7 18.1 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|119872408|ref|YP_930415.1| - 0.0012 18.9 0.4 0.0023 18.0 0.4 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Arginase PF00491.21 gi|119872409|ref|YP_930416.1| - 4.8e-56 190.3 0.0 5.8e-56 190.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family CTP_transf_like PF01467.26 gi|119872410|ref|YP_930417.1| - 1.8e-10 41.1 0.0 4.6e-10 39.8 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like Pantoate_ligase PF02569.15 gi|119872410|ref|YP_930417.1| - 0.18 11.0 0.0 0.23 10.7 0.0 1.1 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase DNA_RNApol_7kD PF03604.13 gi|119872411|ref|YP_930418.1| - 2.3e-05 24.0 4.4 6.5e-05 22.5 4.4 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|119872411|ref|YP_930418.1| - 0.0015 18.9 1.5 0.13 12.7 0.1 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|119872411|ref|YP_930418.1| - 0.0019 18.3 0.2 0.0028 17.7 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF2072 PF09845.9 gi|119872411|ref|YP_930418.1| - 0.0042 17.3 0.2 0.0053 17.0 0.2 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein zf_UBZ PF18439.1 gi|119872411|ref|YP_930418.1| - 0.0052 16.4 1.4 0.11 12.2 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|119872411|ref|YP_930418.1| - 0.006 17.3 1.3 1.5 9.9 0.1 2.2 2 0 0 2 2 2 1 C2H2-type zinc finger zf-C2HC5 PF06221.13 gi|119872411|ref|YP_930418.1| - 0.013 15.5 0.2 0.016 15.2 0.2 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-H2C2_2 PF13465.6 gi|119872411|ref|YP_930418.1| - 0.02 15.3 0.6 4.5 7.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DZR PF12773.7 gi|119872411|ref|YP_930418.1| - 0.024 14.7 0.2 0.042 13.9 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon Mut7-C PF01927.16 gi|119872411|ref|YP_930418.1| - 0.025 14.7 0.6 1.4 9.0 0.1 2.0 1 1 1 2 2 2 0 Mut7-C RNAse domain PyrI_C PF02748.15 gi|119872411|ref|YP_930418.1| - 0.03 14.2 0.9 2.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain HypA PF01155.19 gi|119872411|ref|YP_930418.1| - 0.034 14.2 0.2 0.036 14.1 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|119872411|ref|YP_930418.1| - 0.042 13.6 0.8 2.6 7.9 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein IBR PF01485.21 gi|119872411|ref|YP_930418.1| - 0.043 14.1 0.2 0.044 14.0 0.2 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Zn_ribbon_SprT PF17283.2 gi|119872411|ref|YP_930418.1| - 0.047 13.6 2.3 0.2 11.6 2.3 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|119872411|ref|YP_930418.1| - 0.047 13.2 1.7 0.73 9.4 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-BED PF02892.15 gi|119872411|ref|YP_930418.1| - 0.066 13.2 3.6 1.3 9.1 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger TackOD1 PF18551.1 gi|119872411|ref|YP_930418.1| - 0.066 12.9 0.2 0.08 12.6 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Rtf2 PF04641.12 gi|119872411|ref|YP_930418.1| - 0.17 11.3 0.6 0.17 11.2 0.6 1.0 1 0 0 1 1 1 0 Rtf2 RING-finger zf-AN1 PF01428.16 gi|119872411|ref|YP_930418.1| - 0.38 10.9 2.6 14 6.0 0.2 2.1 1 1 1 2 2 2 0 AN1-like Zinc finger zf_C2H2_6 PF18450.1 gi|119872411|ref|YP_930418.1| - 0.61 9.8 3.4 1.4 8.7 0.2 2.4 2 1 0 2 2 2 0 Zinc Finger domain DUF3341 PF11821.8 gi|119872413|ref|YP_930420.1| - 1.9 8.1 10.0 0.17 11.5 4.9 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) ABC2_membrane PF01061.24 gi|119872414|ref|YP_930421.1| - 5e-11 42.4 24.8 7.4e-11 41.9 24.8 1.2 1 0 0 1 1 1 1 ABC-2 type transporter DUF3087 PF11286.8 gi|119872414|ref|YP_930421.1| - 4 6.9 8.3 0.35 10.3 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3087) ABC_tran PF00005.27 gi|119872415|ref|YP_930422.1| - 1.4e-24 87.1 0.0 2e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872415|ref|YP_930422.1| - 7.6e-14 52.2 0.0 4.3e-08 33.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|119872415|ref|YP_930422.1| - 0.00014 21.6 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119872415|ref|YP_930422.1| - 0.00019 21.9 0.1 0.0004 20.8 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|119872415|ref|YP_930422.1| - 0.0034 17.1 0.0 0.12 12.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|119872415|ref|YP_930422.1| - 0.0063 17.0 0.0 0.01 16.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|119872415|ref|YP_930422.1| - 0.021 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|119872415|ref|YP_930422.1| - 0.023 15.0 0.0 0.049 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|119872415|ref|YP_930422.1| - 0.027 14.3 0.1 0.052 13.3 0.1 1.5 1 1 0 1 1 1 0 MukB N-terminal AAA_30 PF13604.6 gi|119872415|ref|YP_930422.1| - 0.036 13.8 0.0 0.13 12.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|119872415|ref|YP_930422.1| - 0.036 14.0 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|119872415|ref|YP_930422.1| - 0.037 13.4 0.0 0.061 12.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|119872415|ref|YP_930422.1| - 0.041 13.9 0.0 0.11 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|119872415|ref|YP_930422.1| - 0.045 14.2 0.0 0.15 12.4 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FliMN_C PF01052.20 gi|119872415|ref|YP_930422.1| - 0.048 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Type III flagellar switch regulator (C-ring) FliN C-term SRP54 PF00448.22 gi|119872415|ref|YP_930422.1| - 0.049 13.3 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|119872415|ref|YP_930422.1| - 0.081 12.6 0.0 0.37 10.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein SMC_N PF02463.19 gi|119872415|ref|YP_930422.1| - 0.085 12.3 0.0 2.6 7.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|119872415|ref|YP_930422.1| - 0.09 12.8 0.0 1.1 9.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|119872415|ref|YP_930422.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|119872415|ref|YP_930422.1| - 0.14 12.3 0.0 0.39 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|119872415|ref|YP_930422.1| - 0.15 12.3 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|119872415|ref|YP_930422.1| - 0.16 10.6 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_PrkA PF08298.11 gi|119872415|ref|YP_930422.1| - 0.18 10.7 0.0 0.31 9.9 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain HAD_2 PF13419.6 gi|119872416|ref|YP_930423.1| - 6.3e-29 101.3 0.0 7.5e-29 101.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119872416|ref|YP_930423.1| - 3.7e-11 43.7 0.0 1.4e-08 35.3 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119872416|ref|YP_930423.1| - 2.2e-07 31.5 0.2 1.3e-06 29.0 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119872416|ref|YP_930423.1| - 1.4e-06 28.2 0.0 2.6e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|119872416|ref|YP_930423.1| - 0.00029 20.7 0.0 0.053 13.2 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119872416|ref|YP_930423.1| - 0.0012 18.4 0.0 0.03 13.9 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase NIF PF03031.18 gi|119872416|ref|YP_930423.1| - 0.18 11.5 0.0 0.86 9.4 0.0 2.0 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase DUF72 PF01904.18 gi|119872417|ref|YP_930424.1| - 4.2e-32 112.0 0.0 5.5e-32 111.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF3275 PF11679.8 gi|119872419|ref|YP_930426.1| - 0.1 12.6 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) Asparaginase_2 PF01112.18 gi|119872420|ref|YP_930427.1| - 3e-78 263.0 4.1 3.5e-78 262.7 4.1 1.0 1 0 0 1 1 1 1 Asparaginase S4 PF01479.25 gi|119872421|ref|YP_930428.1| - 9.7e-16 57.2 0.3 1.9e-15 56.3 0.3 1.5 1 0 0 1 1 1 1 S4 domain TyrRSs_C PF16714.5 gi|119872421|ref|YP_930428.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S13 PF00416.22 gi|119872422|ref|YP_930429.1| - 6e-38 130.1 0.0 7.1e-38 129.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|119872422|ref|YP_930429.1| - 0.0076 15.1 0.0 0.0084 14.9 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.6 gi|119872422|ref|YP_930429.1| - 0.0095 16.5 1.2 0.05 14.2 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|119872422|ref|YP_930429.1| - 0.033 14.5 0.0 0.11 12.8 0.0 2.0 1 0 0 1 1 1 0 IMS family HHH motif HHH PF00633.23 gi|119872422|ref|YP_930429.1| - 0.072 13.0 1.4 0.41 10.6 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif BPD_transp_1 PF00528.22 gi|119872423|ref|YP_930430.1| - 1e-25 90.6 14.6 1e-25 90.6 14.6 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119872424|ref|YP_930431.1| - 3.2e-30 105.3 17.1 3.2e-30 105.3 17.1 2.3 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|119872425|ref|YP_930432.1| - 2.9e-24 85.8 6.1 8.5e-21 74.3 0.1 2.6 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Gram_pos_anchor PF00746.21 gi|119872425|ref|YP_930432.1| - 0.012 15.5 1.7 0.012 15.5 1.7 2.0 2 0 0 2 2 2 0 LPXTG cell wall anchor motif N_BRCA1_IG PF16158.5 gi|119872425|ref|YP_930432.1| - 0.085 13.6 0.0 0.21 12.3 0.0 1.6 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene Glycoprotein PF03409.15 gi|119872425|ref|YP_930432.1| - 5.7 5.7 8.1 10 4.9 8.1 1.3 1 0 0 1 1 1 0 Transmembrane glycoprotein DoxD PF04173.13 gi|119872426|ref|YP_930433.1| - 0.024 14.5 0.1 0.026 14.4 0.1 1.0 1 0 0 1 1 1 0 TQO small subunit DoxD DUF872 PF05915.12 gi|119872426|ref|YP_930433.1| - 0.032 14.4 2.2 1.2 9.3 0.6 2.0 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) Tetraspanin PF00335.20 gi|119872426|ref|YP_930433.1| - 0.065 12.9 0.9 0.077 12.7 0.9 1.1 1 0 0 1 1 1 0 Tetraspanin family Claudin_2 PF13903.6 gi|119872426|ref|YP_930433.1| - 0.067 12.9 0.5 0.078 12.7 0.5 1.0 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Glucodextran_C PF09985.9 gi|119872427|ref|YP_930434.1| - 9e-39 133.3 0.3 4.7e-21 75.3 0.3 2.5 2 1 1 3 3 3 2 C-terminal binding-module, SLH-like, of glucodextranase DUF2192 PF09958.9 gi|119872428|ref|YP_930435.1| - 3.2e-70 236.2 1.6 3.6e-70 236.1 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.18 gi|119872429|ref|YP_930436.1| - 2e-35 121.7 0.1 2.3e-35 121.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF4055 PF13264.6 gi|119872429|ref|YP_930436.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4055) NAC PF01849.18 gi|119872430|ref|YP_930437.1| - 2.6e-05 24.1 0.2 5e-05 23.2 0.2 1.5 1 0 0 1 1 1 1 NAC domain UBA PF00627.31 gi|119872430|ref|YP_930437.1| - 0.00025 20.9 0.0 0.00046 20.0 0.0 1.5 1 0 0 1 1 1 1 UBA/TS-N domain PixA PF12306.8 gi|119872430|ref|YP_930437.1| - 0.011 16.0 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 0 Inclusion body protein HOIP-UBA PF16678.5 gi|119872430|ref|YP_930437.1| - 0.029 14.4 0.1 0.056 13.4 0.0 1.6 2 0 0 2 2 2 0 HOIP UBA domain pair DUF2635 PF10948.8 gi|119872430|ref|YP_930437.1| - 0.12 12.2 0.0 0.4 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2635) SH3_2 PF07653.17 gi|119872430|ref|YP_930437.1| - 0.14 11.9 0.0 2.6 7.8 0.0 2.3 2 1 0 2 2 2 0 Variant SH3 domain tRNA-synt_2c PF01411.19 gi|119872431|ref|YP_930438.1| - 6.4e-120 401.3 0.0 1.1e-119 400.4 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|119872431|ref|YP_930438.1| - 1.3e-13 50.8 0.1 3.1e-13 49.6 0.1 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|119872431|ref|YP_930438.1| - 2.2e-05 24.9 2.0 2.2e-05 24.9 2.0 2.0 3 0 0 3 3 3 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|119872431|ref|YP_930438.1| - 0.00044 19.6 0.2 0.00082 18.7 0.2 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Glyco_trans_1_2 PF13524.6 gi|119872431|ref|YP_930438.1| - 3 8.3 4.4 1.2 9.5 1.0 2.2 2 1 0 2 2 2 0 Glycosyl transferases group 1 Spt4 PF06093.13 gi|119872433|ref|YP_930440.1| - 6.4e-17 61.4 0.4 7.7e-17 61.2 0.4 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|119872433|ref|YP_930440.1| - 0.00018 21.4 1.0 0.00021 21.2 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.9 gi|119872433|ref|YP_930440.1| - 0.00047 20.2 6.8 0.00085 19.3 6.8 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_15 PF17032.5 gi|119872433|ref|YP_930440.1| - 0.0012 19.6 1.9 0.0015 19.2 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|119872433|ref|YP_930440.1| - 0.0012 18.5 4.6 0.0021 17.7 4.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872433|ref|YP_930440.1| - 0.0077 15.6 4.1 0.012 15.0 4.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119872433|ref|YP_930440.1| - 0.0092 15.5 0.6 0.027 14.0 0.0 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding HypA PF01155.19 gi|119872433|ref|YP_930440.1| - 0.011 15.7 0.5 0.014 15.4 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-tcix PF14952.6 gi|119872433|ref|YP_930440.1| - 0.034 13.8 4.2 1.4 8.6 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-RING_4 PF14570.6 gi|119872433|ref|YP_930440.1| - 0.043 13.6 2.0 0.07 12.9 2.0 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain NRDD PF13597.6 gi|119872433|ref|YP_930440.1| - 0.048 12.5 0.3 0.053 12.3 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-NADH-PPase PF09297.11 gi|119872433|ref|YP_930440.1| - 0.065 12.9 0.1 0.065 12.9 0.1 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF35_N PF12172.8 gi|119872433|ref|YP_930440.1| - 0.065 13.1 0.5 0.097 12.6 0.5 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1451 PF07295.11 gi|119872433|ref|YP_930440.1| - 0.079 13.0 1.2 0.11 12.6 1.2 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF2072 PF09845.9 gi|119872433|ref|YP_930440.1| - 0.11 12.8 2.7 0.16 12.3 2.2 1.5 1 1 0 1 1 1 0 Zn-ribbon containing protein zf_UBZ PF18439.1 gi|119872433|ref|YP_930440.1| - 0.52 9.9 3.8 1.5 8.5 1.3 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger SHS2_Rpb7-N PF03876.17 gi|119872434|ref|YP_930441.1| - 1.2e-17 64.0 0.0 2.1e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|119872434|ref|YP_930441.1| - 5.2e-09 36.3 0.2 1e-08 35.4 0.2 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|119872434|ref|YP_930441.1| - 0.0034 17.6 0.3 0.027 14.7 0.0 2.1 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|119872435|ref|YP_930442.1| - 4.6e-13 49.5 0.5 5.7e-13 49.2 0.5 1.1 1 0 0 1 1 1 1 PIN like domain PIN PF01850.21 gi|119872435|ref|YP_930442.1| - 1.2e-08 35.4 1.3 3.2e-05 24.4 0.7 2.0 1 1 1 2 2 2 2 PIN domain PIN_4 PF13638.6 gi|119872435|ref|YP_930442.1| - 2.1e-08 34.5 0.4 0.0003 21.1 0.3 2.2 1 1 1 2 2 2 2 PIN domain PIN_5 PF08745.11 gi|119872435|ref|YP_930442.1| - 6.4e-05 22.5 1.3 0.062 12.7 0.1 2.6 1 1 1 2 2 2 2 PINc domain ribonuclease PIN_6 PF17146.4 gi|119872435|ref|YP_930442.1| - 0.0019 18.7 0.2 0.0024 18.3 0.2 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease DUF5615 PF18480.1 gi|119872435|ref|YP_930442.1| - 0.031 14.0 0.0 0.064 13.0 0.0 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF5615) Mut7-C PF01927.16 gi|119872435|ref|YP_930442.1| - 0.16 12.1 0.1 0.4 10.8 0.0 1.6 1 1 1 2 2 2 0 Mut7-C RNAse domain AAA_21 PF13304.6 gi|119872436|ref|YP_930443.1| - 5.9e-09 36.2 0.0 0.00083 19.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119872436|ref|YP_930443.1| - 5.5e-07 29.6 0.0 3.1e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|119872436|ref|YP_930443.1| - 8.8e-06 26.2 0.0 0.015 15.7 0.0 2.5 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119872436|ref|YP_930443.1| - 0.00067 19.4 0.0 0.0017 18.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|119872436|ref|YP_930443.1| - 0.0012 18.5 0.0 0.0029 17.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119872436|ref|YP_930443.1| - 0.0028 17.1 0.0 0.074 12.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119872436|ref|YP_930443.1| - 0.014 15.9 0.0 0.018 15.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119872436|ref|YP_930443.1| - 0.021 15.1 0.0 0.36 11.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|119872436|ref|YP_930443.1| - 0.062 13.7 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase ATPase_2 PF01637.18 gi|119872436|ref|YP_930443.1| - 0.1 12.5 0.0 0.84 9.5 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|119872436|ref|YP_930443.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|119872436|ref|YP_930443.1| - 0.12 11.9 0.1 0.74 9.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|119872436|ref|YP_930443.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|119872436|ref|YP_930443.1| - 0.13 12.7 0.0 4.6 7.6 0.0 2.3 2 1 0 2 2 2 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|119872436|ref|YP_930443.1| - 0.18 11.5 0.0 0.59 9.9 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein HIT PF01230.23 gi|119872437|ref|YP_930444.1| - 1.3e-12 48.2 0.0 2e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|119872437|ref|YP_930444.1| - 2.2e-07 30.7 0.0 4e-07 29.9 0.0 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|119872437|ref|YP_930444.1| - 0.00012 22.6 0.6 0.00065 20.2 0.3 1.9 1 1 1 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding DegQ PF08181.11 gi|119872437|ref|YP_930444.1| - 0.2 11.8 0.9 0.47 10.6 0.9 1.6 1 0 0 1 1 1 0 DegQ (SacQ) family NTP_transferase PF00483.23 gi|119872440|ref|YP_930447.1| - 1.7e-38 132.6 0.0 2.1e-38 132.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|119872440|ref|YP_930447.1| - 2.2e-11 43.0 11.2 1.1e-05 25.0 0.6 4.3 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|119872440|ref|YP_930447.1| - 2.9e-10 40.7 0.0 4.3e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF4954 PF16314.5 gi|119872440|ref|YP_930447.1| - 0.042 12.0 0.0 0.061 11.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Hexapep_2 PF14602.6 gi|119872440|ref|YP_930447.1| - 0.39 10.5 0.1 0.39 10.5 0.1 4.2 2 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase BtpA PF03437.15 gi|119872441|ref|YP_930448.1| - 1.9e-52 178.2 0.4 3e-52 177.6 0.4 1.3 1 1 0 1 1 1 1 BtpA family IreB PF06135.12 gi|119872443|ref|YP_930450.1| - 0.061 13.5 0.2 0.18 12.0 0.0 1.8 2 0 0 2 2 2 0 IreB regulatory phosphoprotein Clathrin PF00637.20 gi|119872443|ref|YP_930450.1| - 0.062 13.2 0.2 0.14 12.1 0.1 1.7 1 1 0 1 1 1 0 Region in Clathrin and VPS ssDNA-exonuc_C PF10141.9 gi|119872443|ref|YP_930450.1| - 0.081 12.6 0.0 0.17 11.5 0.0 1.5 1 1 1 2 2 2 0 Single-strand DNA-specific exonuclease, C terminal domain NETI PF14044.6 gi|119872443|ref|YP_930450.1| - 0.15 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 NETI protein Peptidase_M48 PF01435.18 gi|119872444|ref|YP_930451.1| - 1.3e-18 67.5 0.1 2.2e-18 66.8 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|119872444|ref|YP_930451.1| - 0.004 16.4 1.9 0.054 12.7 1.9 2.1 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF2201_N PF13203.6 gi|119872444|ref|YP_930451.1| - 0.21 11.2 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF3253 PF11625.8 gi|119872445|ref|YP_930452.1| - 0.023 14.9 0.0 0.04 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) Helicase_C_2 PF13307.6 gi|119872446|ref|YP_930453.1| - 1.3e-10 41.8 0.0 2.8e-10 40.7 0.0 1.6 1 1 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|119872446|ref|YP_930453.1| - 6.7e-05 22.6 0.3 0.0002 21.1 0.0 1.8 2 0 0 2 2 2 1 DEAD_2 AAA_16 PF13191.6 gi|119872446|ref|YP_930453.1| - 0.019 15.3 0.0 0.87 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain RuvB_N PF05496.12 gi|119872446|ref|YP_930453.1| - 0.096 12.4 0.1 9.2 6.0 0.1 2.4 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DEAD PF00270.29 gi|119872446|ref|YP_930453.1| - 0.21 11.3 0.0 2.6 7.8 0.0 2.7 1 1 0 1 1 1 0 DEAD/DEAH box helicase Cir_Bir_Yir PF06022.11 gi|119872447|ref|YP_930454.1| - 0.0043 16.6 0.1 0.0053 16.3 0.1 1.0 1 0 0 1 1 1 1 Plasmodium variant antigen protein Cir/Yir/Bir Spore_III_AB PF09548.10 gi|119872447|ref|YP_930454.1| - 0.0047 17.0 0.0 0.0058 16.7 0.0 1.1 1 0 0 1 1 1 1 Stage III sporulation protein AB (spore_III_AB) SurE PF01975.17 gi|119872448|ref|YP_930455.1| - 7.6e-41 140.0 0.0 9.6e-41 139.7 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Glyco_transf_4 PF13439.6 gi|119872448|ref|YP_930455.1| - 0.029 14.4 0.0 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Catalase_C PF18011.1 gi|119872448|ref|YP_930455.1| - 0.065 12.9 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 C-terminal domain found in long catalases PALP PF00291.25 gi|119872448|ref|YP_930455.1| - 0.071 12.5 0.1 0.094 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Trp_halogenase PF04820.14 gi|119872450|ref|YP_930457.1| - 2.8e-10 39.7 0.4 0.039 12.8 0.2 3.1 2 1 1 3 3 3 3 Tryptophan halogenase DAO PF01266.24 gi|119872450|ref|YP_930457.1| - 1.3e-09 38.1 2.7 1.7e-05 24.6 0.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|119872450|ref|YP_930457.1| - 6.6e-09 35.6 1.7 1.5e-08 34.4 1.7 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119872450|ref|YP_930457.1| - 2.6e-08 33.4 2.7 0.0024 17.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|119872450|ref|YP_930457.1| - 6.7e-06 25.6 1.3 0.0048 16.2 0.2 3.1 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|119872450|ref|YP_930457.1| - 4.2e-05 23.7 0.4 0.00018 21.7 0.4 2.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|119872450|ref|YP_930457.1| - 7.6e-05 22.1 0.6 0.00013 21.3 0.1 1.6 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|119872450|ref|YP_930457.1| - 0.00032 19.9 1.1 0.00043 19.5 0.2 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|119872450|ref|YP_930457.1| - 0.0015 17.3 0.1 0.0025 16.6 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|119872450|ref|YP_930457.1| - 0.0016 17.7 0.2 0.0024 17.1 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.10 gi|119872450|ref|YP_930457.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase Aldolase_II PF00596.21 gi|119872451|ref|YP_930458.1| - 3.2e-43 147.8 0.0 3.6e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CTP-dep_RFKase PF01982.16 gi|119872452|ref|YP_930459.1| - 4.3e-45 152.7 0.0 5.7e-45 152.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|119872452|ref|YP_930459.1| - 0.0019 18.1 0.1 0.0037 17.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|119872452|ref|YP_930459.1| - 0.021 14.8 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|119872452|ref|YP_930459.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|119872452|ref|YP_930459.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|119872452|ref|YP_930459.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF87 PF01935.17 gi|119872453|ref|YP_930460.1| - 2.5e-22 80.1 0.2 4.4e-22 79.3 0.1 1.4 1 1 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|119872453|ref|YP_930460.1| - 4.9e-11 42.2 0.0 4.4e-09 35.7 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|119872453|ref|YP_930460.1| - 5.8e-06 25.5 0.0 0.037 12.9 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_16 PF13191.6 gi|119872453|ref|YP_930460.1| - 9.6e-06 26.1 0.0 7e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|119872453|ref|YP_930460.1| - 2.1e-05 24.6 2.9 0.001 19.0 2.9 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea FtsK_SpoIIIE PF01580.18 gi|119872453|ref|YP_930460.1| - 0.00011 21.6 0.3 0.005 16.2 0.0 2.4 3 0 0 3 3 3 1 FtsK/SpoIIIE family DUF815 PF05673.13 gi|119872453|ref|YP_930460.1| - 0.00012 21.3 0.0 0.00026 20.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) MeaB PF03308.16 gi|119872453|ref|YP_930460.1| - 0.00015 20.9 0.1 0.00027 20.0 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|119872453|ref|YP_930460.1| - 0.00019 21.8 0.1 0.068 13.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|119872453|ref|YP_930460.1| - 0.0014 18.1 0.3 0.0044 16.5 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein MobB PF03205.14 gi|119872453|ref|YP_930460.1| - 0.0015 18.4 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|119872453|ref|YP_930460.1| - 0.0021 18.1 0.2 0.065 13.3 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase CbiA PF01656.23 gi|119872453|ref|YP_930460.1| - 0.014 15.4 0.0 0.029 14.4 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CLP1_P PF16575.5 gi|119872453|ref|YP_930460.1| - 0.02 14.7 0.2 0.062 13.1 0.0 1.8 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_7 PF12775.7 gi|119872453|ref|YP_930460.1| - 0.03 13.9 0.0 0.14 11.7 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA PF00004.29 gi|119872453|ref|YP_930460.1| - 0.035 14.5 0.2 1.9 8.9 0.0 3.1 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|119872453|ref|YP_930460.1| - 0.043 14.1 1.0 0.84 10.0 1.0 2.3 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119872453|ref|YP_930460.1| - 0.057 13.9 0.0 0.11 13.0 0.0 1.5 1 0 0 1 1 1 0 ABC transporter IstB_IS21 PF01695.17 gi|119872453|ref|YP_930460.1| - 0.083 12.6 0.1 0.21 11.3 0.1 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|119872453|ref|YP_930460.1| - 0.12 12.7 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ResIII PF04851.15 gi|119872453|ref|YP_930460.1| - 0.12 12.3 0.1 3.3 7.7 0.0 2.3 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|119872453|ref|YP_930460.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NurA PF09376.10 gi|119872454|ref|YP_930461.1| - 1.6e-33 116.4 0.4 6.1e-33 114.5 0.4 1.9 1 1 0 1 1 1 1 NurA domain ASCH PF04266.14 gi|119872455|ref|YP_930462.1| - 9.7e-14 51.9 0.1 1.9e-13 50.9 0.0 1.5 2 0 0 2 2 2 1 ASCH domain HTH_1 PF00126.27 gi|119872455|ref|YP_930462.1| - 0.021 14.8 0.0 0.059 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF711 PF05167.12 gi|119872456|ref|YP_930463.1| - 2.8e-31 108.8 0.0 9.1e-31 107.2 0.0 1.8 2 1 0 2 2 2 1 Uncharacterised ACR (DUF711) Radical_SAM PF04055.21 gi|119872456|ref|YP_930463.1| - 0.16 12.4 0.0 20 5.5 0.0 2.5 1 1 1 2 2 2 0 Radical SAM superfamily AGOG PF09171.10 gi|119872457|ref|YP_930464.1| - 1.2e-06 28.0 0.0 3e-06 26.7 0.0 1.6 2 0 0 2 2 2 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|119872457|ref|YP_930464.1| - 0.034 14.5 5.8 0.053 13.9 5.8 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PTPS PF01242.19 gi|119872458|ref|YP_930465.1| - 5.9e-09 36.0 0.0 7.4e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ThiS PF02597.20 gi|119872459|ref|YP_930466.1| - 7.8e-18 64.9 0.0 8.8e-18 64.7 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|119872459|ref|YP_930466.1| - 6.6e-06 26.4 0.0 7.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS-like PF14453.6 gi|119872459|ref|YP_930466.1| - 0.095 12.8 0.1 1.1 9.3 0.0 2.5 2 1 1 3 3 3 0 ThiS-like ubiquitin Flavin_Reduct PF01613.18 gi|119872460|ref|YP_930467.1| - 9.4e-07 29.0 0.0 1.2e-06 28.6 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain RHH_8 PF17723.1 gi|119872461|ref|YP_930468.1| - 4.7e-05 23.5 0.0 4.7e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family RHH_1 PF01402.21 gi|119872461|ref|YP_930468.1| - 8.6e-05 22.3 0.0 9.8e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|119872461|ref|YP_930468.1| - 0.11 12.9 0.0 0.12 12.8 0.0 1.0 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MtlR PF05068.12 gi|119872461|ref|YP_930468.1| - 0.12 12.4 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Mannitol repressor Fumerase PF05681.14 gi|119872462|ref|YP_930469.1| - 3.2e-82 276.0 0.0 3.6e-82 275.8 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) H-K_ATPase_N PF09040.11 gi|119872462|ref|YP_930469.1| - 0.12 12.9 0.0 0.38 11.2 0.0 1.8 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain Fumerase_C PF05683.12 gi|119872463|ref|YP_930470.1| - 2.5e-49 167.4 0.4 2.9e-49 167.2 0.4 1.0 1 0 0 1 1 1 1 Fumarase C-terminus CDC24_OB3 PF17244.2 gi|119872463|ref|YP_930470.1| - 0.06 13.1 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 DEAD PF00270.29 gi|119872464|ref|YP_930471.1| - 6.4e-33 114.0 0.0 2.3e-32 112.2 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119872464|ref|YP_930471.1| - 1.5e-21 76.9 0.2 1.2e-18 67.5 0.1 2.8 3 0 0 3 3 3 2 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|119872464|ref|YP_930471.1| - 1.5e-13 51.0 0.0 8.8e-13 48.5 0.0 2.2 1 1 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|119872464|ref|YP_930471.1| - 2.3e-07 31.0 0.0 8.1e-07 29.2 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|119872464|ref|YP_930471.1| - 0.0025 18.2 0.0 0.029 14.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|119872464|ref|YP_930471.1| - 0.016 15.5 0.0 0.12 12.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain HypA PF01155.19 gi|119872464|ref|YP_930471.1| - 0.018 15.1 0.0 0.046 13.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|119872464|ref|YP_930471.1| - 0.056 12.2 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain HHH_5 PF14520.6 gi|119872464|ref|YP_930471.1| - 0.1 13.2 0.0 3.2 8.4 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain Lsm_C PF14894.6 gi|119872465|ref|YP_930472.1| - 4.1e-24 84.1 1.0 9.1e-24 83.0 1.0 1.5 1 0 0 1 1 1 1 Lsm C-terminal SM-ATX PF14438.6 gi|119872465|ref|YP_930472.1| - 6.8e-12 45.4 0.2 1.5e-11 44.2 0.2 1.7 1 1 0 1 1 1 1 Ataxin 2 SM domain LSM PF01423.22 gi|119872465|ref|YP_930472.1| - 2.6e-10 39.8 0.6 3.7e-10 39.4 0.6 1.5 1 1 0 1 1 1 1 LSM domain LSM14 PF12701.7 gi|119872465|ref|YP_930472.1| - 0.00022 21.3 0.1 0.0011 19.0 0.1 2.0 1 1 0 1 1 1 1 Scd6-like Sm domain Gemin6 PF06372.12 gi|119872465|ref|YP_930472.1| - 0.0024 17.4 0.3 0.033 13.7 0.1 2.0 1 1 1 2 2 2 1 Gemin6 protein Med14 PF08638.11 gi|119872465|ref|YP_930472.1| - 0.0053 16.2 0.0 0.0064 15.9 0.0 1.1 1 0 0 1 1 1 1 Mediator complex subunit MED14 RNA_pol_RpbG PF16992.5 gi|119872466|ref|YP_930473.1| - 0.0014 18.7 0.7 0.0016 18.5 0.7 1.2 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G PilZ PF07238.14 gi|119872466|ref|YP_930473.1| - 0.098 13.0 0.1 4.3 7.7 0.0 2.1 2 0 0 2 2 2 0 PilZ domain TF_Zn_Ribbon PF08271.12 gi|119872467|ref|YP_930474.1| - 3.1e-07 29.8 1.7 5.1e-07 29.1 1.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|119872467|ref|YP_930474.1| - 9.6e-07 28.8 0.2 1.4e-06 28.3 0.2 1.3 1 0 0 1 1 1 1 Transcription factor TFIIB repeat A2L_zn_ribbon PF08792.10 gi|119872467|ref|YP_930474.1| - 3.8e-06 26.5 1.5 5.8e-06 25.9 1.5 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-RRN7 PF11781.8 gi|119872467|ref|YP_930474.1| - 0.00096 18.8 2.7 0.0021 17.7 2.7 1.6 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cyclin_C PF02984.19 gi|119872467|ref|YP_930474.1| - 0.0075 16.4 0.0 0.015 15.4 0.0 1.5 2 0 0 2 2 2 1 Cyclin, C-terminal domain zinc_ribbon_2 PF13240.6 gi|119872467|ref|YP_930474.1| - 0.019 14.7 0.6 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RPA_interact_C PF14768.6 gi|119872467|ref|YP_930474.1| - 0.032 14.8 0.3 0.049 14.2 0.3 1.5 1 1 0 1 1 1 0 Replication protein A interacting C-terminal zf-ribbon_3 PF13248.6 gi|119872467|ref|YP_930474.1| - 0.053 12.9 3.9 0.33 10.4 3.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|119872467|ref|YP_930474.1| - 0.11 12.6 0.2 0.18 11.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-RRPl_C4 PF17026.5 gi|119872467|ref|YP_930474.1| - 0.14 12.3 1.8 0.31 11.2 1.7 1.7 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type Zn_ribbon_SprT PF17283.2 gi|119872467|ref|YP_930474.1| - 0.17 11.8 0.7 11 6.1 0.1 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain T2SSE PF00437.20 gi|119872468|ref|YP_930475.1| - 3.1e-21 75.7 0.3 4.2e-21 75.2 0.3 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|119872468|ref|YP_930475.1| - 2e-05 25.1 0.0 3.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|119872468|ref|YP_930475.1| - 7e-05 23.4 0.0 0.00021 21.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119872468|ref|YP_930475.1| - 0.00014 22.3 0.0 0.00024 21.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119872468|ref|YP_930475.1| - 0.00036 20.8 0.6 0.0037 17.5 0.4 2.2 1 1 1 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|119872468|ref|YP_930475.1| - 0.00053 20.0 0.1 0.0017 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|119872468|ref|YP_930475.1| - 0.00077 19.3 0.0 0.0012 18.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|119872468|ref|YP_930475.1| - 0.00091 19.2 0.0 0.0026 17.7 0.0 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|119872468|ref|YP_930475.1| - 0.0012 18.6 0.0 0.0023 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119872468|ref|YP_930475.1| - 0.0014 18.3 0.0 0.0027 17.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|119872468|ref|YP_930475.1| - 0.0026 17.7 6.7 0.017 15.1 0.2 3.1 2 2 1 4 4 4 1 NTPase ATPase_2 PF01637.18 gi|119872468|ref|YP_930475.1| - 0.0027 17.7 1.3 0.0027 17.7 1.3 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|119872468|ref|YP_930475.1| - 0.0033 16.8 0.0 0.0064 15.9 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|119872468|ref|YP_930475.1| - 0.0036 16.9 0.0 0.0087 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|119872468|ref|YP_930475.1| - 0.0038 16.5 0.3 0.0062 15.8 0.3 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|119872468|ref|YP_930475.1| - 0.0041 16.9 0.2 0.0081 15.9 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|119872468|ref|YP_930475.1| - 0.0077 16.6 0.0 0.023 15.0 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|119872468|ref|YP_930475.1| - 0.0081 16.4 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain GTP_cyclohydro2 PF00925.20 gi|119872468|ref|YP_930475.1| - 0.009 15.6 0.2 0.55 9.8 0.0 2.3 1 1 1 2 2 2 1 GTP cyclohydrolase II KTI12 PF08433.10 gi|119872468|ref|YP_930475.1| - 0.0093 15.4 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 IstB_IS21 PF01695.17 gi|119872468|ref|YP_930475.1| - 0.013 15.3 0.0 0.031 14.0 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|119872468|ref|YP_930475.1| - 0.015 14.6 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family cobW PF02492.19 gi|119872468|ref|YP_930475.1| - 0.018 14.6 0.0 0.042 13.4 0.0 1.7 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain GvpD PF07088.11 gi|119872468|ref|YP_930475.1| - 0.021 13.5 0.0 0.044 12.4 0.0 1.5 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_7 PF12775.7 gi|119872468|ref|YP_930475.1| - 0.022 14.3 0.0 0.053 13.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|119872468|ref|YP_930475.1| - 0.032 14.0 0.0 0.081 12.7 0.0 1.6 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_23 PF13476.6 gi|119872468|ref|YP_930475.1| - 0.038 14.5 3.1 0.19 12.2 3.1 2.1 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|119872468|ref|YP_930475.1| - 0.039 13.3 0.9 0.092 12.1 0.0 1.9 2 1 1 3 3 3 0 KaiC Viral_helicase1 PF01443.18 gi|119872468|ref|YP_930475.1| - 0.043 13.6 0.0 0.088 12.5 0.0 1.5 2 0 0 2 2 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|119872468|ref|YP_930475.1| - 0.043 13.1 0.0 0.075 12.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA PF00004.29 gi|119872468|ref|YP_930475.1| - 0.046 14.1 0.4 0.15 12.5 0.4 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|119872468|ref|YP_930475.1| - 0.056 13.4 0.3 0.15 12.0 0.0 1.9 3 0 0 3 3 1 0 NACHT domain DUF643 PF04867.12 gi|119872468|ref|YP_930475.1| - 0.094 13.3 1.5 3.9 8.1 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF643) DEAD PF00270.29 gi|119872468|ref|YP_930475.1| - 0.11 12.3 3.0 0.65 9.7 0.0 2.8 2 1 0 3 3 3 0 DEAD/DEAH box helicase DUF4070 PF13282.6 gi|119872469|ref|YP_930476.1| - 0.019 15.1 0.1 0.031 14.4 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4070) Cpn60_TCP1 PF00118.24 gi|119872470|ref|YP_930477.1| - 4.3e-177 589.6 10.5 5e-177 589.4 10.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|119872470|ref|YP_930477.1| - 1.2e-06 28.5 2.1 0.003 17.5 1.0 2.4 2 0 0 2 2 2 2 DAK2 domain DUF2710 PF10921.8 gi|119872470|ref|YP_930477.1| - 0.042 14.2 0.2 1.2 9.6 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) Peptidase_M24 PF00557.24 gi|119872471|ref|YP_930478.1| - 6.4e-36 124.0 0.0 7.6e-36 123.8 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Toprim_4 PF13662.6 gi|119872472|ref|YP_930479.1| - 6.5e-08 32.9 0.3 2.2e-07 31.3 0.3 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|119872472|ref|YP_930479.1| - 0.00035 20.9 0.0 0.0014 19.0 0.0 2.1 1 0 0 1 1 1 1 Toprim-like PBSX_XtrA PF17356.2 gi|119872472|ref|YP_930479.1| - 0.021 14.7 0.3 0.021 14.7 0.3 2.6 3 0 0 3 3 3 0 Phage-like element PBSX protein XtrA Toprim PF01751.22 gi|119872472|ref|YP_930479.1| - 0.25 11.6 3.6 0.29 11.4 0.2 2.7 2 1 0 2 2 2 0 Toprim domain DNA_pol_B PF00136.21 gi|119872473|ref|YP_930480.1| - 8.2e-69 232.5 0.0 1.1e-68 232.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|119872473|ref|YP_930480.1| - 4.4e-35 121.4 0.0 9.8e-33 113.7 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|119872473|ref|YP_930480.1| - 1.5e-06 28.3 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|119872473|ref|YP_930480.1| - 1.1e-05 25.3 0.0 1.8e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|119872473|ref|YP_930480.1| - 0.039 12.8 0.3 0.072 11.9 0.3 1.3 1 0 0 1 1 1 0 DNA polymerase type B, organellar and viral Ribosomal_L27A PF00828.19 gi|119872475|ref|YP_930482.1| - 4.6e-19 69.4 0.8 5.2e-19 69.2 0.2 1.4 1 1 1 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|119872476|ref|YP_930483.1| - 1e-51 176.0 21.3 1.5e-51 175.5 21.3 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|119872476|ref|YP_930483.1| - 0.0025 17.6 0.3 0.013 15.4 0.4 2.2 2 0 0 2 2 2 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.17 gi|119872478|ref|YP_930485.1| - 4.7e-47 160.9 0.0 5.8e-47 160.6 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.19 gi|119872478|ref|YP_930485.1| - 0.21 11.7 0.0 24 5.1 0.0 2.2 2 0 0 2 2 2 0 SpoU rRNA Methylase family NTP_transferase PF00483.23 gi|119872479|ref|YP_930486.1| - 1.9e-35 122.6 0.0 2.4e-35 122.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|119872479|ref|YP_930486.1| - 3.9e-12 45.4 7.3 9.1e-05 22.0 2.6 4.5 1 1 3 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|119872479|ref|YP_930486.1| - 1.5e-07 30.8 0.4 0.001 18.1 0.0 3.0 2 1 1 3 3 3 3 L-fucokinase DUF4954 PF16314.5 gi|119872479|ref|YP_930486.1| - 2.6e-05 22.6 0.7 3.8e-05 22.1 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) NTP_transf_3 PF12804.7 gi|119872479|ref|YP_930486.1| - 0.00019 21.8 0.0 0.00028 21.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_5 PF08323.11 gi|119872480|ref|YP_930487.1| - 4.5e-41 141.2 0.0 7.5e-41 140.4 0.0 1.3 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|119872480|ref|YP_930487.1| - 5.6e-27 94.4 0.0 1.1e-26 93.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872480|ref|YP_930487.1| - 1.3e-18 67.7 0.0 3.4e-18 66.4 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872480|ref|YP_930487.1| - 3.6e-12 46.6 6.4 4.2e-11 43.1 3.8 3.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119872480|ref|YP_930487.1| - 3.9e-10 40.4 3.1 2.8e-09 37.6 3.1 2.4 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119872480|ref|YP_930487.1| - 0.086 13.3 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_hydro_57 PF03065.15 gi|119872481|ref|YP_930488.1| - 5.7e-65 219.6 0.3 8.3e-65 219.1 0.3 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|119872481|ref|YP_930488.1| - 0.039 13.9 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Polysaccharide deacetylase AFOR_C PF01314.18 gi|119872482|ref|YP_930489.1| - 3.9e-117 391.5 0.1 4.8e-117 391.2 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|119872482|ref|YP_930489.1| - 1.9e-77 259.6 0.2 3e-77 259.0 0.2 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Phosphorylase PF00343.20 gi|119872483|ref|YP_930490.1| - 6.5e-13 47.9 0.0 1.8e-12 46.4 0.0 1.6 1 1 1 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|119872483|ref|YP_930490.1| - 3.3e-11 43.0 0.0 8.1e-11 41.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872483|ref|YP_930490.1| - 3.2e-05 24.4 0.0 0.00013 22.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Aldolase_II PF00596.21 gi|119872483|ref|YP_930490.1| - 0.067 13.1 0.0 0.14 12.1 0.0 1.5 1 1 0 1 1 1 0 Class II Aldolase and Adducin N-terminal domain ThiI PF02568.14 gi|119872484|ref|YP_930491.1| - 8.3e-56 188.7 0.0 1.5e-55 187.9 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|119872484|ref|YP_930491.1| - 1.3e-22 80.4 0.5 1.3e-22 80.4 0.5 1.9 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|119872484|ref|YP_930491.1| - 2e-07 31.5 0.0 1.4e-06 28.7 0.0 2.1 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|119872484|ref|YP_930491.1| - 3.3e-05 23.5 0.1 0.27 10.7 0.0 2.5 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|119872484|ref|YP_930491.1| - 0.017 13.9 0.1 0.033 13.0 0.1 1.4 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|119872484|ref|YP_930491.1| - 0.053 13.3 0.2 0.9 9.3 0.2 2.1 1 1 0 1 1 1 0 PP-loop family Lactamase_B_3 PF13483.6 gi|119872485|ref|YP_930492.1| - 1.4e-08 34.8 0.0 2.5e-08 34.0 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|119872485|ref|YP_930492.1| - 7.8e-08 32.1 1.2 3.3e-07 30.0 1.1 2.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119872485|ref|YP_930492.1| - 1.3e-06 28.5 7.4 6.8e-05 23.0 6.8 2.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily DRMBL PF07522.14 gi|119872485|ref|YP_930492.1| - 6e-05 23.2 0.0 0.00012 22.2 0.0 1.5 1 0 0 1 1 1 1 DNA repair metallo-beta-lactamase RMMBL PF07521.12 gi|119872485|ref|YP_930492.1| - 0.00045 20.1 0.0 0.012 15.5 0.0 2.7 3 0 0 3 3 3 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|119872485|ref|YP_930492.1| - 0.0058 16.1 0.0 1.3 8.4 0.0 2.3 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily domain Bmp PF02608.14 gi|119872487|ref|YP_930494.1| - 2.8e-36 125.0 0.0 4e-36 124.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 gi|119872487|ref|YP_930494.1| - 0.00053 19.7 1.3 0.023 14.4 0.0 2.8 3 0 0 3 3 3 1 Periplasmic binding protein CpxA_peri PF16527.5 gi|119872487|ref|YP_930494.1| - 0.072 13.5 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Two-component sensor protein CpxA, periplasmic domain CtnDOT_TraJ PF07863.11 gi|119872487|ref|YP_930494.1| - 0.16 12.7 0.3 0.39 11.4 0.3 1.6 1 0 0 1 1 1 0 Homologues of TraJ from Bacteroides conjugative transposon ABC_tran PF00005.27 gi|119872488|ref|YP_930495.1| - 4.2e-49 166.6 0.0 1.5e-30 106.5 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|119872488|ref|YP_930495.1| - 1.1e-09 38.5 0.6 0.00023 21.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119872488|ref|YP_930495.1| - 2.4e-05 24.2 0.0 0.021 14.5 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|119872488|ref|YP_930495.1| - 0.00026 20.7 0.0 0.00099 18.8 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119872488|ref|YP_930495.1| - 0.00082 19.9 0.5 0.002 18.7 0.5 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119872488|ref|YP_930495.1| - 0.0018 18.2 0.6 0.041 13.8 0.0 2.8 1 1 2 3 3 3 1 RsgA GTPase MukB PF04310.12 gi|119872488|ref|YP_930495.1| - 0.0071 16.2 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 MukB N-terminal AAA_27 PF13514.6 gi|119872488|ref|YP_930495.1| - 0.018 14.7 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|119872488|ref|YP_930495.1| - 0.019 14.7 0.1 6.3 6.5 0.1 2.3 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|119872488|ref|YP_930495.1| - 0.036 13.5 0.1 2.6 7.4 0.0 2.8 2 2 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|119872488|ref|YP_930495.1| - 0.06 13.1 0.0 0.25 11.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain OTCace PF00185.24 gi|119872488|ref|YP_930495.1| - 0.078 13.0 0.0 7.2 6.7 0.0 2.2 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ANF_receptor PF01094.28 gi|119872488|ref|YP_930495.1| - 0.088 11.9 0.1 0.37 9.8 0.1 1.9 2 1 1 3 3 3 0 Receptor family ligand binding region ABC_ATPase PF09818.9 gi|119872488|ref|YP_930495.1| - 0.11 11.3 0.2 6.9 5.4 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_22 PF13401.6 gi|119872488|ref|YP_930495.1| - 0.15 12.4 0.0 13 6.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.16 gi|119872489|ref|YP_930496.1| - 3.8e-25 88.6 28.4 3.8e-25 88.6 28.4 1.8 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|119872490|ref|YP_930497.1| - 5.6e-18 65.1 31.2 1.9e-17 63.3 31.2 1.7 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2715 PF10895.8 gi|119872490|ref|YP_930497.1| - 0.44 10.2 3.1 0.29 10.8 1.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF2715) ROK PF00480.20 gi|119872491|ref|YP_930498.1| - 2.5e-56 191.3 0.0 2.9e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|119872491|ref|YP_930498.1| - 0.00033 20.3 0.0 0.00053 19.6 0.0 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 gi|119872491|ref|YP_930498.1| - 0.0013 18.3 0.0 0.0016 18.0 0.0 1.4 1 1 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family MutL PF13941.6 gi|119872491|ref|YP_930498.1| - 0.014 14.1 0.0 0.018 13.6 0.0 1.1 1 0 0 1 1 1 0 MutL protein Hydant_A_N PF05378.13 gi|119872491|ref|YP_930498.1| - 0.014 15.1 0.2 0.023 14.4 0.2 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region ELFV_dehydrog PF00208.21 gi|119872492|ref|YP_930499.1| - 3e-70 236.7 0.2 3.9e-70 236.3 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|119872492|ref|YP_930499.1| - 1.7e-49 167.0 0.0 2.6e-49 166.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|119872492|ref|YP_930499.1| - 4.6e-05 22.9 0.5 9.1e-05 21.9 0.5 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|119872492|ref|YP_930499.1| - 0.0029 17.7 0.0 0.0057 16.7 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|119872492|ref|YP_930499.1| - 0.035 13.8 0.0 0.054 13.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA EVC2_like PF12297.8 gi|119872493|ref|YP_930500.1| - 0.12 11.0 1.1 0.16 10.7 1.1 1.1 1 0 0 1 1 1 0 Ellis van Creveld protein 2 like protein NTP_transf_3 PF12804.7 gi|119872495|ref|YP_930502.1| - 1e-20 74.7 0.0 1.7e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Stomoxyn PF11585.8 gi|119872495|ref|YP_930502.1| - 0.04 13.9 0.8 0.11 12.5 0.2 2.0 2 0 0 2 2 2 0 Insect antimicrobial peptide, stomoxyn Glyco_hydro_57 PF03065.15 gi|119872496|ref|YP_930503.1| - 2.3e-90 303.1 0.0 3.3e-90 302.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|119872496|ref|YP_930503.1| - 8.2e-60 202.1 0.0 1.4e-59 201.3 0.0 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase DUF3182 PF11379.8 gi|119872496|ref|YP_930503.1| - 0.081 11.9 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3182) SBP_bac_8 PF13416.6 gi|119872497|ref|YP_930504.1| - 2.1e-39 136.0 1.7 3.5e-39 135.3 1.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119872497|ref|YP_930504.1| - 4e-26 92.7 6.6 5.9e-26 92.2 6.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119872497|ref|YP_930504.1| - 4.9e-06 26.1 0.1 0.00023 20.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|119872498|ref|YP_930505.1| - 6.5e-13 48.8 21.8 6.5e-13 48.8 21.8 2.7 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|119872498|ref|YP_930505.1| - 0.015 15.4 2.9 0.038 14.1 2.9 1.7 1 0 0 1 1 1 0 N-terminal of TM subunit in PBP-dependent ABC transporters BPD_transp_1 PF00528.22 gi|119872499|ref|YP_930506.1| - 2.6e-13 50.1 20.8 2.6e-13 50.1 20.8 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component GerA PF03323.13 gi|119872499|ref|YP_930506.1| - 0.042 12.3 4.5 0.072 11.5 4.5 1.4 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Peptidase_M48 PF01435.18 gi|119872500|ref|YP_930507.1| - 1.7e-45 155.2 0.1 3.1e-45 154.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M48 DUF1345 PF07077.11 gi|119872500|ref|YP_930507.1| - 0.014 15.1 0.6 0.014 15.1 0.6 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1345) Cyt_bd_oxida_II PF02322.15 gi|119872500|ref|YP_930507.1| - 0.032 13.6 14.7 0.44 9.8 9.1 2.2 2 0 0 2 2 2 0 Cytochrome bd terminal oxidase subunit II DUF423 PF04241.15 gi|119872500|ref|YP_930507.1| - 3.1 8.1 9.9 6.6 7.0 4.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF423) Tmpp129 PF10272.9 gi|119872500|ref|YP_930507.1| - 3.5 6.8 4.7 1.1 8.4 0.1 2.0 2 0 0 2 2 2 0 Putative transmembrane protein precursor DUF2070 PF09843.9 gi|119872500|ref|YP_930507.1| - 7.3 4.7 21.8 4.4 5.5 14.8 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2070) PBP_like PF12727.7 gi|119872502|ref|YP_930509.1| - 1.6e-57 193.7 0.0 4.1e-57 192.4 0.0 1.6 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.17 gi|119872502|ref|YP_930509.1| - 2.4e-47 160.6 1.4 4.1e-47 159.8 1.4 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|119872502|ref|YP_930509.1| - 1e-26 93.3 0.4 3e-26 91.8 0.0 2.0 3 0 0 3 3 3 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|119872502|ref|YP_930509.1| - 6.7e-17 61.4 0.7 2.8e-16 59.4 0.1 2.5 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|119872502|ref|YP_930509.1| - 0.0045 16.7 0.0 0.0096 15.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Guanylate_kin PF00625.21 gi|119872502|ref|YP_930509.1| - 0.018 14.7 0.2 2.3 7.9 0.0 2.2 2 0 0 2 2 2 0 Guanylate kinase T2SSE PF00437.20 gi|119872502|ref|YP_930509.1| - 0.021 13.9 0.1 0.068 12.2 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein LysR_substrate PF03466.20 gi|119872502|ref|YP_930509.1| - 0.14 11.6 0.0 0.41 10.0 0.0 1.8 1 1 0 1 1 1 0 LysR substrate binding domain MoeA_N PF03453.17 gi|119872503|ref|YP_930510.1| - 1.5e-42 145.0 0.1 3e-42 144.1 0.1 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|119872503|ref|YP_930510.1| - 3.7e-27 94.7 0.1 5.7e-27 94.1 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|119872503|ref|YP_930510.1| - 1.7e-19 69.7 0.8 8.3e-19 67.5 0.1 2.5 3 0 0 3 3 3 1 MoeA C-terminal region (domain IV) GATase_6 PF13522.6 gi|119872505|ref|YP_930512.1| - 1.1e-08 35.3 0.0 1.6e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|119872505|ref|YP_930512.1| - 0.00033 19.6 0.0 0.00073 18.5 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferases class-II AsnC_trans_reg PF01037.21 gi|119872506|ref|YP_930513.1| - 5.5e-17 61.5 0.2 6e-17 61.4 0.2 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|119872506|ref|YP_930513.1| - 0.0029 17.5 0.0 0.0033 17.3 0.0 1.3 1 0 0 1 1 1 1 GYD domain Spore_YhcN_YlaJ PF09580.10 gi|119872506|ref|YP_930513.1| - 0.013 15.6 0.4 0.016 15.3 0.4 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AsnC_trans_reg PF01037.21 gi|119872508|ref|YP_930515.1| - 3.1e-23 81.5 0.0 4.8e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|119872508|ref|YP_930515.1| - 1.4e-12 47.2 0.7 2.6e-12 46.3 0.7 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|119872508|ref|YP_930515.1| - 2.5e-12 46.1 0.7 5.3e-12 45.1 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119872508|ref|YP_930515.1| - 0.00066 19.5 0.0 0.0012 18.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|119872508|ref|YP_930515.1| - 0.00072 19.5 0.2 0.0048 16.8 0.1 2.0 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|119872508|ref|YP_930515.1| - 0.0017 18.2 0.1 0.0029 17.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|119872508|ref|YP_930515.1| - 0.0018 18.2 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_47 PF16221.5 gi|119872508|ref|YP_930515.1| - 0.0019 17.7 0.0 0.0044 16.5 0.0 1.6 1 0 0 1 1 1 1 winged helix-turn-helix HTH_20 PF12840.7 gi|119872508|ref|YP_930515.1| - 0.0056 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|119872508|ref|YP_930515.1| - 0.0072 16.1 0.9 0.012 15.4 0.1 1.8 2 0 0 2 2 2 1 Homeodomain-like domain MarR PF01047.22 gi|119872508|ref|YP_930515.1| - 0.027 14.4 0.1 0.05 13.5 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|119872508|ref|YP_930515.1| - 0.049 14.1 0.1 0.092 13.2 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|119872508|ref|YP_930515.1| - 0.14 12.0 0.0 0.29 11.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain NurA PF09376.10 gi|119872509|ref|YP_930516.1| - 2.3e-08 34.0 1.8 1.1e-07 31.8 1.8 2.0 1 1 0 1 1 1 1 NurA domain DUF2791 PF10923.8 gi|119872511|ref|YP_930518.1| - 2.6e-05 23.2 0.1 0.00019 20.4 0.0 2.4 1 1 1 2 2 2 1 P-loop Domain of unknown function (DUF2791) HTH_IclR PF09339.10 gi|119872511|ref|YP_930518.1| - 7.4e-05 22.5 0.0 0.00024 20.8 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_16 PF13191.6 gi|119872511|ref|YP_930518.1| - 9.4e-05 22.8 0.5 0.0023 18.3 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain MarR_2 PF12802.7 gi|119872511|ref|YP_930518.1| - 0.00011 22.0 0.2 0.0042 16.9 0.1 2.7 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|119872511|ref|YP_930518.1| - 0.00017 21.4 0.3 0.0008 19.3 0.3 2.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|119872511|ref|YP_930518.1| - 0.0056 16.8 0.1 0.028 14.6 0.1 2.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|119872511|ref|YP_930518.1| - 0.0069 16.2 0.0 0.019 14.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_10 PF04967.12 gi|119872511|ref|YP_930518.1| - 0.041 13.7 2.7 0.87 9.4 0.0 3.7 4 0 0 4 4 4 0 HTH DNA binding domain Rrf2 PF02082.20 gi|119872511|ref|YP_930518.1| - 0.1 13.0 0.1 0.48 10.8 0.1 2.2 1 0 0 1 1 1 0 Transcriptional regulator AAA_22 PF13401.6 gi|119872511|ref|YP_930518.1| - 0.12 12.6 4.2 29 4.9 0.1 4.7 4 1 1 5 5 5 0 AAA domain DUF4349 PF14257.6 gi|119872511|ref|YP_930518.1| - 0.19 11.2 3.2 0.66 9.4 3.2 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Erythro_esteras PF05139.14 gi|119872511|ref|YP_930518.1| - 0.25 11.1 0.4 0.47 10.2 0.4 1.4 1 0 0 1 1 1 0 Erythromycin esterase GntR PF00392.21 gi|119872511|ref|YP_930518.1| - 0.76 9.5 3.6 4.6 7.0 0.5 3.5 4 0 0 4 4 4 0 Bacterial regulatory proteins, gntR family Acetyltransf_1 PF00583.25 gi|119872512|ref|YP_930519.1| - 1.2e-16 60.9 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|119872512|ref|YP_930519.1| - 1.9e-13 50.5 0.0 3e-13 49.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119872512|ref|YP_930519.1| - 9.7e-13 48.4 0.0 1.6e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119872512|ref|YP_930519.1| - 1.5e-08 34.5 0.0 2.2e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|119872512|ref|YP_930519.1| - 0.00011 21.9 0.0 0.00017 21.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119872512|ref|YP_930519.1| - 0.00027 21.0 0.0 0.0031 17.6 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119872512|ref|YP_930519.1| - 0.00038 21.1 0.0 0.0006 20.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|119872512|ref|YP_930519.1| - 0.0012 19.0 0.0 0.0016 18.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|119872512|ref|YP_930519.1| - 0.003 17.0 0.0 0.0052 16.3 0.0 1.6 1 1 0 1 1 1 1 Putative acetyl-transferase GNAT_acetyltran PF12746.7 gi|119872512|ref|YP_930519.1| - 0.0043 16.6 0.1 0.0065 16.1 0.1 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Npun_R1517 PF18068.1 gi|119872512|ref|YP_930519.1| - 0.019 15.3 0.1 0.045 14.1 0.0 1.7 2 0 0 2 2 2 0 Npun R1517 Acetyltransf_6 PF13480.7 gi|119872512|ref|YP_930519.1| - 0.021 15.0 0.0 0.027 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|119872512|ref|YP_930519.1| - 0.03 14.4 0.0 0.053 13.7 0.0 1.5 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase CbiA PF01656.23 gi|119872513|ref|YP_930520.1| - 0.0053 16.8 1.2 0.017 15.2 1.2 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Transketolase_C PF02780.20 gi|119872513|ref|YP_930520.1| - 0.022 14.6 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain ArsA_ATPase PF02374.15 gi|119872513|ref|YP_930520.1| - 0.26 10.4 2.6 4.8 6.3 0.9 2.1 2 0 0 2 2 2 0 Anion-transporting ATPase DUF4428 PF14471.6 gi|119872514|ref|YP_930521.1| - 0.00061 19.7 0.9 0.00061 19.7 0.9 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4428) DNA_RNApol_7kD PF03604.13 gi|119872514|ref|YP_930521.1| - 0.6 9.8 6.8 0.66 9.7 1.1 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADD_ATRX PF17981.1 gi|119872514|ref|YP_930521.1| - 0.65 9.9 8.6 0.061 13.2 3.5 2.0 2 1 0 2 2 2 0 Cysteine Rich ADD domain AMMECR1 PF01871.17 gi|119872515|ref|YP_930522.1| - 4e-42 143.7 0.0 4.6e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 HTH_17 PF12728.7 gi|119872515|ref|YP_930522.1| - 0.13 12.4 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4389 PF14333.6 gi|119872516|ref|YP_930523.1| - 0.45 10.5 4.5 1.2 9.1 2.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4389) OrfB_Zn_ribbon PF07282.11 gi|119872517|ref|YP_930524.1| - 1.2e-06 28.4 0.1 1.5e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872517|ref|YP_930524.1| - 0.0078 15.8 0.9 0.015 14.9 0.3 1.8 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain TrmB PF01978.19 gi|119872518|ref|YP_930525.1| - 1.7e-17 63.0 0.0 4.3e-17 61.8 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119872518|ref|YP_930525.1| - 4.2e-05 23.0 0.1 0.00011 21.6 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119872518|ref|YP_930525.1| - 0.00081 19.2 0.0 0.0021 17.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|119872518|ref|YP_930525.1| - 0.018 14.9 0.0 0.039 13.8 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|119872518|ref|YP_930525.1| - 0.018 15.5 0.0 0.039 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|119872518|ref|YP_930525.1| - 0.053 13.9 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Penicillinase repressor MarR PF01047.22 gi|119872518|ref|YP_930525.1| - 0.057 13.3 0.1 0.26 11.3 0.0 2.1 2 0 0 2 2 2 0 MarR family RPW8 PF05659.11 gi|119872518|ref|YP_930525.1| - 0.075 12.7 0.6 7.7 6.2 0.2 2.4 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Radical_SAM PF04055.21 gi|119872519|ref|YP_930526.1| - 5.2e-23 82.3 1.2 1.4e-22 80.9 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119872519|ref|YP_930526.1| - 8.6e-06 25.9 0.0 4.5e-05 23.6 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119872519|ref|YP_930526.1| - 5.6e-05 23.4 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain YdaS_antitoxin PF15943.5 gi|119872519|ref|YP_930526.1| - 0.047 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LXG PF04740.12 gi|119872520|ref|YP_930527.1| - 0.0057 16.4 3.7 5.4 6.7 0.0 3.3 2 1 1 3 3 3 2 LXG domain of WXG superfamily Laminin_II PF06009.12 gi|119872520|ref|YP_930527.1| - 0.05 13.6 13.2 0.087 12.8 2.9 3.5 3 0 0 3 3 3 0 Laminin Domain II Streptin-Immun PF11083.8 gi|119872520|ref|YP_930527.1| - 0.065 13.6 2.1 2.1 8.8 0.1 3.4 4 0 0 4 4 4 0 Lantibiotic streptin immunity protein APG17 PF04108.12 gi|119872520|ref|YP_930527.1| - 0.14 11.3 11.9 0.099 11.7 4.0 3.3 2 2 1 3 3 3 0 Autophagy protein Apg17 Filament PF00038.21 gi|119872520|ref|YP_930527.1| - 0.21 11.2 7.9 4.9 6.6 1.8 3.4 1 1 2 4 4 4 0 Intermediate filament protein COG2 PF06148.11 gi|119872520|ref|YP_930527.1| - 0.3 11.2 9.8 1.6 8.8 1.6 4.2 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1664 PF07889.12 gi|119872520|ref|YP_930527.1| - 0.45 10.6 6.2 4.2 7.4 2.1 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Flagellin_C PF00700.21 gi|119872520|ref|YP_930527.1| - 0.49 10.8 9.0 0.22 11.9 1.9 3.6 2 2 0 3 3 3 0 Bacterial flagellin C-terminal helical region Prefoldin_2 PF01920.20 gi|119872520|ref|YP_930527.1| - 0.88 9.5 3.7 1.4 8.9 0.7 2.6 3 0 0 3 3 3 0 Prefoldin subunit TPR_MLP1_2 PF07926.12 gi|119872520|ref|YP_930527.1| - 2.9 8.0 7.6 0.62 10.1 0.5 3.1 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein Noelin-1 PF12308.8 gi|119872520|ref|YP_930527.1| - 5.4 7.1 5.9 28 4.8 0.1 3.6 3 1 1 4 4 4 0 Neurogenesis glycoprotein BLOC1_2 PF10046.9 gi|119872520|ref|YP_930527.1| - 7 7.0 8.1 28 5.1 0.0 4.1 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran PF00005.27 gi|119872521|ref|YP_930528.1| - 2.1e-33 115.7 0.0 2.8e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872521|ref|YP_930528.1| - 2.7e-13 50.4 0.1 2.5e-08 34.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872521|ref|YP_930528.1| - 8.6e-06 25.3 0.1 0.0051 16.3 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|119872521|ref|YP_930528.1| - 5.3e-05 23.7 0.1 9.4e-05 22.9 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119872521|ref|YP_930528.1| - 0.00016 21.6 0.2 0.00028 20.8 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|119872521|ref|YP_930528.1| - 0.00024 20.8 0.1 0.00047 19.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119872521|ref|YP_930528.1| - 0.00026 21.3 0.1 0.002 18.4 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|119872521|ref|YP_930528.1| - 0.00091 19.7 0.0 0.0048 17.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|119872521|ref|YP_930528.1| - 0.0011 19.0 0.2 0.0022 17.9 0.2 1.6 1 1 0 1 1 1 1 NACHT domain AAA_28 PF13521.6 gi|119872521|ref|YP_930528.1| - 0.0016 18.7 0.0 0.0048 17.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|119872521|ref|YP_930528.1| - 0.0021 17.8 0.1 0.003 17.3 0.1 1.5 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|119872521|ref|YP_930528.1| - 0.0046 16.0 0.2 0.0068 15.5 0.2 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein cobW PF02492.19 gi|119872521|ref|YP_930528.1| - 0.0061 16.2 0.0 0.015 14.9 0.0 1.7 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|119872521|ref|YP_930528.1| - 0.011 16.3 0.0 0.1 13.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|119872521|ref|YP_930528.1| - 0.014 15.1 0.0 0.21 11.3 0.0 2.3 2 1 0 2 2 2 0 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|119872521|ref|YP_930528.1| - 0.024 14.5 0.0 0.045 13.7 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|119872521|ref|YP_930528.1| - 0.03 14.5 0.0 0.052 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119872521|ref|YP_930528.1| - 0.037 14.5 0.0 0.058 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|119872521|ref|YP_930528.1| - 0.039 13.7 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|119872521|ref|YP_930528.1| - 0.061 12.9 1.2 0.26 10.8 0.3 2.3 2 1 1 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|119872521|ref|YP_930528.1| - 0.067 12.7 0.1 0.1 12.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|119872521|ref|YP_930528.1| - 0.082 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119872521|ref|YP_930528.1| - 0.087 12.8 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|119872521|ref|YP_930528.1| - 0.093 12.1 0.0 0.2 11.0 0.0 1.5 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.6 gi|119872521|ref|YP_930528.1| - 0.095 12.4 0.0 2.5 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 gi|119872521|ref|YP_930528.1| - 0.095 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|119872521|ref|YP_930528.1| - 0.11 11.9 0.1 0.27 10.6 0.0 1.6 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Gtr1_RagA PF04670.12 gi|119872521|ref|YP_930528.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region SbcCD_C PF13558.6 gi|119872521|ref|YP_930528.1| - 0.12 12.6 0.0 0.54 10.5 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.22 gi|119872521|ref|YP_930528.1| - 0.13 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PduV-EutP PF10662.9 gi|119872521|ref|YP_930528.1| - 0.14 11.9 0.1 0.29 10.9 0.1 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TsaE PF02367.17 gi|119872521|ref|YP_930528.1| - 0.19 11.7 0.0 0.34 10.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_13 PF13166.6 gi|119872521|ref|YP_930528.1| - 0.23 10.0 0.0 6.2 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain FtsX PF02687.21 gi|119872522|ref|YP_930529.1| - 1.4e-14 54.3 3.0 1.4e-14 54.3 3.0 3.0 3 0 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|119872522|ref|YP_930529.1| - 2.3e-08 34.7 6.1 2.3e-08 34.7 6.1 2.1 1 1 0 2 2 2 1 MacB-like periplasmic core domain MMPL PF03176.15 gi|119872523|ref|YP_930530.1| - 2.7e-72 243.5 43.5 2.9e-42 144.8 16.9 2.6 2 1 0 2 2 2 2 MMPL family TrmB PF01978.19 gi|119872524|ref|YP_930531.1| - 0.047 13.6 0.0 0.063 13.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HAD_2 PF13419.6 gi|119872525|ref|YP_930532.1| - 2.5e-12 47.2 0.0 2.9e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|119872525|ref|YP_930532.1| - 8.3e-07 29.0 0.0 1.4e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|119872525|ref|YP_930532.1| - 4.1e-06 27.2 0.0 5.8e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119872525|ref|YP_930532.1| - 0.001 19.5 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119872525|ref|YP_930532.1| - 0.16 11.5 0.0 0.21 11.1 0.0 1.1 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase DUF35_N PF12172.8 gi|119872526|ref|YP_930533.1| - 0.00029 20.7 0.2 0.026 14.4 0.0 2.2 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|119872526|ref|YP_930533.1| - 0.001 19.0 1.2 0.39 10.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119872526|ref|YP_930533.1| - 0.0068 15.9 0.5 1.4 8.5 0.0 2.3 2 0 0 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|119872526|ref|YP_930533.1| - 0.012 15.8 0.6 2 8.6 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-Mss51 PF13824.6 gi|119872526|ref|YP_930533.1| - 0.013 15.6 0.9 3.6 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|119872526|ref|YP_930533.1| - 0.018 14.4 2.9 0.87 9.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|119872526|ref|YP_930533.1| - 0.054 13.4 1.4 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Nop10p PF04135.12 gi|119872526|ref|YP_930533.1| - 0.068 13.2 0.2 0.75 9.9 0.1 2.1 2 0 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zf-C2H2_3 PF13878.6 gi|119872526|ref|YP_930533.1| - 0.073 12.9 0.7 1.7 8.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO TFIIS_C PF01096.18 gi|119872526|ref|YP_930533.1| - 0.13 12.1 0.7 8.3 6.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.13 gi|119872526|ref|YP_930533.1| - 0.18 11.5 2.0 1.3 8.8 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|119872526|ref|YP_930533.1| - 0.4 10.4 4.5 3.4 7.4 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain ATP_bind_3 PF01171.20 gi|119872527|ref|YP_930534.1| - 9.1e-13 48.4 0.0 1.8e-12 47.4 0.0 1.4 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|119872527|ref|YP_930534.1| - 0.00037 20.6 0.1 0.0064 16.6 0.1 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family tRNA_Me_trans PF03054.16 gi|119872527|ref|YP_930534.1| - 0.0051 15.6 0.0 0.011 14.6 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase RecR PF02132.15 gi|119872527|ref|YP_930534.1| - 0.0084 15.7 0.7 0.0084 15.7 0.7 3.3 4 0 0 4 4 4 1 RecR protein zn-ribbon_14 PF16503.5 gi|119872527|ref|YP_930534.1| - 0.024 14.1 0.9 0.024 14.1 0.9 3.0 4 0 0 4 4 3 0 Zinc-ribbon CTU2 PF10288.9 gi|119872527|ref|YP_930534.1| - 0.033 14.4 0.4 0.071 13.4 0.1 1.7 2 0 0 2 2 2 0 Cytoplasmic tRNA 2-thiolation protein 2 Glyco_transf_4 PF13439.6 gi|119872527|ref|YP_930534.1| - 0.056 13.4 0.0 0.33 10.9 0.0 2.0 1 1 1 2 2 2 0 Glycosyltransferase Family 4 Pyr_redox PF00070.27 gi|119872527|ref|YP_930534.1| - 0.1 13.2 0.0 0.28 11.8 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Asn_synthase PF00733.21 gi|119872527|ref|YP_930534.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DUF3217 PF11506.8 gi|119872527|ref|YP_930534.1| - 0.12 12.4 0.1 0.87 9.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3217) DZR PF12773.7 gi|119872527|ref|YP_930534.1| - 0.41 10.7 6.9 3.9 7.6 0.5 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-CHY PF05495.12 gi|119872527|ref|YP_930534.1| - 0.51 10.9 4.7 1 9.9 0.3 2.4 2 0 0 2 2 2 0 CHY zinc finger ACT PF01842.25 gi|119872528|ref|YP_930535.1| - 8.2e-09 35.1 0.1 2.6e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|119872528|ref|YP_930535.1| - 2.2e-05 25.0 0.2 5.5e-05 23.7 0.2 1.6 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|119872528|ref|YP_930535.1| - 7.1e-05 22.7 0.1 0.00015 21.6 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|119872528|ref|YP_930535.1| - 0.00024 20.8 0.1 0.0033 17.2 0.1 2.6 2 1 0 2 2 2 1 ACT domain tRNA-synt_1 PF00133.22 gi|119872529|ref|YP_930536.1| - 1.5e-104 350.4 0.0 2.4e-103 346.5 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|119872529|ref|YP_930536.1| - 8.1e-33 113.5 0.1 1.4e-32 112.7 0.1 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|119872529|ref|YP_930536.1| - 1.5e-21 76.6 0.0 2e-14 53.2 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|119872529|ref|YP_930536.1| - 0.017 14.7 0.0 1.4 8.4 0.0 2.3 1 1 1 2 2 2 0 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119872529|ref|YP_930536.1| - 0.063 12.6 0.0 0.43 9.9 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain ESX-1_EspG PF14011.6 gi|119872529|ref|YP_930536.1| - 0.097 12.3 0.3 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 EspG family DEAD PF00270.29 gi|119872530|ref|YP_930537.1| - 1.4e-26 93.3 0.0 4.9e-26 91.6 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|119872530|ref|YP_930537.1| - 4.9e-19 68.7 0.0 4.2e-16 59.3 0.0 2.5 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|119872530|ref|YP_930537.1| - 4.7e-13 49.7 0.1 1.4e-12 48.1 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|119872530|ref|YP_930537.1| - 0.00015 21.9 0.0 0.00046 20.2 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|119872530|ref|YP_930537.1| - 0.042 13.1 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain MFS_1 PF07690.16 gi|119872531|ref|YP_930538.1| - 9.7e-29 100.4 55.3 7.6e-22 77.7 44.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|119872531|ref|YP_930538.1| - 1.5 7.3 30.8 0.79 8.2 7.4 2.6 2 1 0 2 2 2 0 MFS/sugar transport protein Adenosine_kin PF04008.14 gi|119872532|ref|YP_930539.1| - 2.1e-72 241.9 1.0 2.4e-72 241.8 1.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase FUR PF01475.19 gi|119872533|ref|YP_930540.1| - 8e-22 77.6 0.1 1e-21 77.3 0.1 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|119872533|ref|YP_930540.1| - 2.3e-05 24.7 0.0 4.4e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 Penicillinase repressor PadR PF03551.14 gi|119872533|ref|YP_930540.1| - 0.0018 18.2 0.1 0.0067 16.4 0.0 2.0 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.16 gi|119872533|ref|YP_930540.1| - 0.0049 16.6 0.0 0.014 15.1 0.0 1.8 2 1 0 2 2 2 1 LexA DNA binding domain HTH_22 PF13309.6 gi|119872533|ref|YP_930540.1| - 0.0069 16.4 0.1 0.51 10.5 0.0 2.7 3 0 0 3 3 3 1 HTH domain TrmB PF01978.19 gi|119872533|ref|YP_930540.1| - 0.009 15.9 0.1 0.032 14.1 0.0 2.1 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Pyr_excise PF03013.14 gi|119872533|ref|YP_930540.1| - 0.031 14.2 0.1 0.074 13.0 0.1 1.6 2 0 0 2 2 2 0 Pyrimidine dimer DNA glycosylase NAD_binding_5 PF07994.12 gi|119872533|ref|YP_930540.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase DUF1456 PF07308.13 gi|119872533|ref|YP_930540.1| - 0.091 13.1 0.3 12 6.3 0.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1456) DAO PF01266.24 gi|119872534|ref|YP_930541.1| - 3.3e-42 145.4 0.0 3.8e-42 145.1 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Emaravirus_P4 PF16505.5 gi|119872535|ref|YP_930542.1| - 0.14 11.1 0.0 0.15 11.1 0.0 1.0 1 0 0 1 1 1 0 P4 movement protein of Emaravirus, and the 30K superfamily ATP-grasp_2 PF08442.10 gi|119872536|ref|YP_930543.1| - 3.2e-65 219.5 2.1 6.3e-65 218.5 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|119872536|ref|YP_930543.1| - 2.6e-18 66.3 0.5 4.7e-18 65.5 0.5 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|119872536|ref|YP_930543.1| - 3.8e-11 42.9 2.4 2.9e-10 40.0 0.4 2.9 2 2 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|119872536|ref|YP_930543.1| - 5.6e-08 32.5 0.2 1.3e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|119872536|ref|YP_930543.1| - 0.0019 17.8 0.0 0.0033 17.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CoA_binding PF02629.19 gi|119872537|ref|YP_930544.1| - 7.2e-30 103.5 5.8 1.4e-29 102.6 1.0 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|119872537|ref|YP_930544.1| - 1.1e-12 48.0 0.1 2e-12 47.2 0.1 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|119872537|ref|YP_930544.1| - 4.4e-10 39.5 0.0 8.5e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|119872537|ref|YP_930544.1| - 1.6e-08 35.0 0.4 3.5e-08 33.9 0.4 1.6 1 0 0 1 1 1 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|119872537|ref|YP_930544.1| - 0.00053 20.8 0.3 0.0015 19.4 0.2 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Aminotran_1_2 PF00155.21 gi|119872538|ref|YP_930545.1| - 5e-41 141.1 0.0 5.8e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|119872538|ref|YP_930545.1| - 8.3e-11 41.3 0.0 1.2e-10 40.8 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|119872538|ref|YP_930545.1| - 0.067 12.5 0.0 0.095 12.0 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase PALP PF00291.25 gi|119872539|ref|YP_930546.1| - 7.9e-87 291.4 3.2 1e-86 291.0 3.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|119872539|ref|YP_930546.1| - 4.4e-11 42.3 0.1 2e-10 40.2 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|119872539|ref|YP_930546.1| - 0.0032 18.0 0.0 0.0088 16.6 0.0 1.8 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|119872539|ref|YP_930546.1| - 0.006 16.4 3.0 0.19 11.6 0.0 3.1 2 1 1 3 3 3 1 ACT domain ACT_6 PF13740.6 gi|119872539|ref|YP_930546.1| - 0.015 15.3 0.0 0.048 13.7 0.0 1.9 1 1 0 1 1 1 0 ACT domain Lactamase_B_3 PF13483.6 gi|119872539|ref|YP_930546.1| - 0.074 12.9 0.1 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain OrfB_Zn_ribbon PF07282.11 gi|119872540|ref|YP_930547.1| - 1.2e-09 37.9 0.0 2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872540|ref|YP_930547.1| - 0.0033 17.0 2.6 0.0053 16.4 2.6 1.3 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain NRDD PF13597.6 gi|119872540|ref|YP_930547.1| - 0.006 15.4 0.0 0.0067 15.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.13 gi|119872540|ref|YP_930547.1| - 0.01 15.5 2.0 0.018 14.7 2.0 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|119872540|ref|YP_930547.1| - 0.011 15.7 0.1 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF2387 PF09526.10 gi|119872540|ref|YP_930547.1| - 0.013 15.6 1.6 0.032 14.4 1.6 1.6 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Auto_anti-p27 PF06677.12 gi|119872540|ref|YP_930547.1| - 0.018 15.2 2.5 0.026 14.7 2.5 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37e PF01907.19 gi|119872540|ref|YP_930547.1| - 0.022 14.9 0.1 0.035 14.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Rpr2 PF04032.16 gi|119872540|ref|YP_930547.1| - 0.024 14.9 0.8 0.068 13.5 0.7 1.8 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain C1_1 PF00130.22 gi|119872540|ref|YP_930547.1| - 0.026 14.4 0.5 0.039 13.9 0.5 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TackOD1 PF18551.1 gi|119872540|ref|YP_930547.1| - 0.032 13.9 0.1 0.042 13.5 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 PriA_CRR PF18319.1 gi|119872540|ref|YP_930547.1| - 0.037 14.0 0.1 0.1 12.6 0.1 1.7 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zinc_ribbon_2 PF13240.6 gi|119872540|ref|YP_930547.1| - 0.043 13.5 1.0 0.094 12.5 1.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Rep_fac-A_C PF08646.10 gi|119872540|ref|YP_930547.1| - 0.053 13.3 0.1 0.073 12.8 0.1 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain GFA PF04828.14 gi|119872540|ref|YP_930547.1| - 0.069 13.5 0.0 0.078 13.3 0.0 1.2 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme HypA PF01155.19 gi|119872540|ref|YP_930547.1| - 0.08 13.0 0.1 0.095 12.7 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|119872540|ref|YP_930547.1| - 0.084 12.9 0.5 0.2 11.7 0.5 1.7 1 1 0 1 1 1 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|119872540|ref|YP_930547.1| - 0.085 12.9 0.6 0.12 12.4 0.6 1.2 1 0 0 1 1 1 0 zinc-ribbons EamA PF00892.20 gi|119872541|ref|YP_930548.1| - 0.015 15.5 4.5 0.021 15.0 4.5 1.3 1 0 0 1 1 1 0 EamA-like transporter family Ammonium_transp PF00909.21 gi|119872541|ref|YP_930548.1| - 0.024 13.3 2.3 0.029 13.1 2.3 1.2 1 0 0 1 1 1 0 Ammonium Transporter Family PsbN PF02468.15 gi|119872541|ref|YP_930548.1| - 9.9 6.1 8.5 0.45 10.4 0.2 2.8 3 0 0 3 3 3 0 Photosystem II reaction centre N protein (psbN) OrfB_Zn_ribbon PF07282.11 gi|119872543|ref|YP_930550.1| - 7.3e-12 45.0 0.0 1.7e-11 43.8 0.0 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|119872543|ref|YP_930550.1| - 0.0033 17.1 0.9 0.0084 15.8 0.9 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119872543|ref|YP_930550.1| - 0.0077 15.9 3.7 0.021 14.5 3.7 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain FYDLN_acid PF09538.10 gi|119872543|ref|YP_930550.1| - 0.038 14.7 0.2 0.082 13.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) DZR PF12773.7 gi|119872543|ref|YP_930550.1| - 0.042 13.9 0.8 0.074 13.1 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|119872543|ref|YP_930550.1| - 0.065 13.3 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Pex2_Pex12 PF04757.14 gi|119872543|ref|YP_930550.1| - 0.072 12.7 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region Ribosomal_L37e PF01907.19 gi|119872543|ref|YP_930550.1| - 0.14 12.4 0.4 0.26 11.5 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.13 gi|119872543|ref|YP_930550.1| - 0.25 11.1 2.6 0.61 9.8 2.6 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|119872543|ref|YP_930550.1| - 0.29 10.6 2.1 3.9 7.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119872543|ref|YP_930550.1| - 0.44 10.7 2.2 0.8 9.9 2.2 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|119872543|ref|YP_930550.1| - 0.52 9.9 2.9 4.8 6.8 2.7 2.4 1 1 2 3 3 3 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|119872543|ref|YP_930550.1| - 1.8 8.3 3.4 15 5.3 1.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 tRNA_SAD PF07973.14 gi|119872544|ref|YP_930551.1| - 2.5e-12 46.7 0.1 4.2e-12 46.0 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|119872544|ref|YP_930551.1| - 4.7e-07 28.7 0.1 7.1e-07 28.1 0.1 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) Na_H_Exchanger PF00999.21 gi|119872545|ref|YP_930552.1| - 1.1e-15 57.4 55.6 1.1e-15 57.4 55.6 2.4 2 1 0 2 2 2 1 Sodium/hydrogen exchanger family DUF5518 PF17647.1 gi|119872545|ref|YP_930552.1| - 0.0091 16.1 13.2 0.0091 16.1 13.2 6.2 4 2 1 5 5 5 1 Family of unknown function (DUF5518) AAA_assoc_C PF09821.9 gi|119872547|ref|YP_930554.1| - 0.014 15.9 0.4 0.058 13.9 0.0 2.2 2 1 0 2 2 2 0 C-terminal AAA-associated domain HD PF01966.22 gi|119872548|ref|YP_930555.1| - 5.4e-06 26.6 0.2 9.3e-06 25.9 0.2 1.4 1 0 0 1 1 1 1 HD domain DBD_Tnp_Hermes PF10683.9 gi|119872550|ref|YP_930557.1| - 0.022 14.4 0.2 0.37 10.5 0.0 2.2 2 0 0 2 2 2 0 Hermes transposase DNA-binding domain MAF_flag10 PF01973.18 gi|119872551|ref|YP_930558.1| - 1.7e-07 31.1 0.0 3.1e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF115 PhosphMutase PF10143.9 gi|119872553|ref|YP_930560.1| - 1.1e-51 175.1 0.0 1.8e-51 174.4 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|119872553|ref|YP_930560.1| - 8e-34 117.1 0.0 9.5e-34 116.9 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|119872553|ref|YP_930560.1| - 0.0014 17.7 0.0 0.0042 16.1 0.0 1.6 1 1 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.22 gi|119872553|ref|YP_930560.1| - 0.022 14.3 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase Pyr_redox PF00070.27 gi|119872553|ref|YP_930560.1| - 0.05 14.2 0.1 3.7 8.2 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF4974 PF16344.5 gi|119872553|ref|YP_930560.1| - 0.12 12.3 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) DUF2533 PF10752.9 gi|119872553|ref|YP_930560.1| - 0.17 12.4 0.1 0.72 10.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2533) CutA1 PF03091.15 gi|119872554|ref|YP_930561.1| - 1.5e-36 124.2 0.1 1.8e-36 123.9 0.1 1.1 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein OrfB_Zn_ribbon PF07282.11 gi|119872555|ref|YP_930562.1| - 6.3e-09 35.6 0.0 1.2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HCV_NS1 PF01560.17 gi|119872555|ref|YP_930562.1| - 0.0095 14.6 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 Hepatitis C virus non-structural protein E2/NS1 NERD PF08378.11 gi|119872556|ref|YP_930563.1| - 3.5e-07 30.6 0.0 5.9e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 gi|119872556|ref|YP_930563.1| - 2.1e-05 24.5 0.1 3.6e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|119872556|ref|YP_930563.1| - 0.089 13.0 0.1 0.17 12.2 0.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0102 OrfB_Zn_ribbon PF07282.11 gi|119872556|ref|YP_930563.1| - 0.13 12.2 1.0 8.8 6.3 0.1 2.6 2 1 1 3 3 3 0 Putative transposase DNA-binding domain MMR_HSR1 PF01926.23 gi|119872558|ref|YP_930565.1| - 3.9e-16 59.1 0.1 5.7e-13 48.9 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|119872558|ref|YP_930565.1| - 7.1e-11 42.3 0.0 1.5e-10 41.2 0.0 1.5 1 1 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|119872558|ref|YP_930565.1| - 2.7e-08 33.5 0.5 0.00035 20.1 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|119872558|ref|YP_930565.1| - 2.8e-08 34.0 0.1 0.0015 18.7 0.0 2.9 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|119872558|ref|YP_930565.1| - 4.4e-05 23.1 0.3 0.00096 18.7 0.1 2.5 2 1 1 3 3 3 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|119872558|ref|YP_930565.1| - 0.00038 20.1 0.1 0.017 14.7 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Arf PF00025.21 gi|119872558|ref|YP_930565.1| - 0.012 15.0 0.5 0.37 10.2 0.0 2.8 2 1 1 3 3 3 0 ADP-ribosylation factor family MeaB PF03308.16 gi|119872558|ref|YP_930565.1| - 0.016 14.2 0.1 0.047 12.7 0.0 1.8 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Ras PF00071.22 gi|119872558|ref|YP_930565.1| - 0.021 14.4 0.0 1.7 8.2 0.0 2.2 2 0 0 2 2 2 0 Ras family AAA_18 PF13238.6 gi|119872558|ref|YP_930565.1| - 0.046 14.3 0.0 0.11 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|119872558|ref|YP_930565.1| - 0.07 13.2 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_25 PF13481.6 gi|119872558|ref|YP_930565.1| - 0.09 12.3 1.1 4.3 6.9 0.1 2.8 2 1 1 3 3 3 0 AAA domain AIG1 PF04548.16 gi|119872558|ref|YP_930565.1| - 0.12 11.7 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 AIG1 family AAA_16 PF13191.6 gi|119872558|ref|YP_930565.1| - 0.16 12.4 0.2 0.42 11.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_D PF01813.17 gi|119872559|ref|YP_930566.1| - 4.6e-39 134.3 10.9 5.2e-39 134.1 10.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D KAR9 PF08580.10 gi|119872559|ref|YP_930566.1| - 0.007 15.0 0.0 0.0086 14.7 0.0 1.1 1 0 0 1 1 1 1 Yeast cortical protein KAR9 GPAT_N PF14829.6 gi|119872559|ref|YP_930566.1| - 0.0091 16.0 0.0 0.033 14.2 0.0 1.9 1 1 1 2 2 2 1 Glycerol-3-phosphate acyltransferase N-terminal Cep57_CLD_2 PF14197.6 gi|119872559|ref|YP_930566.1| - 0.082 13.0 1.0 0.082 13.0 1.0 1.8 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Cucumopine_C PF18631.1 gi|119872559|ref|YP_930566.1| - 0.15 12.0 1.4 0.43 10.5 0.6 2.0 2 1 0 2 2 2 0 Cucumopine synthase C-terminal helical bundle domain Baculo_PEP_C PF04513.12 gi|119872559|ref|YP_930566.1| - 0.17 11.9 0.5 0.35 10.9 0.5 1.5 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|119872560|ref|YP_930567.1| - 0.0021 18.0 0.5 0.0021 17.9 0.5 1.0 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain CdvA PF18822.1 gi|119872560|ref|YP_930567.1| - 0.0055 16.5 4.0 0.0055 16.5 4.0 1.0 1 0 0 1 1 1 1 CdvA-like coiled-coil domain HisKA_3 PF07730.13 gi|119872560|ref|YP_930567.1| - 0.059 13.9 0.1 0.064 13.8 0.1 1.1 1 0 0 1 1 1 0 Histidine kinase ColG_sub PF18496.1 gi|119872560|ref|YP_930567.1| - 0.16 12.2 0.6 0.16 12.1 0.6 1.1 1 0 0 1 1 1 0 Collagenase G catalytic helper subdomain ATP-synt_C PF00137.21 gi|119872561|ref|YP_930568.1| - 1.1e-18 67.4 14.9 1.1e-18 67.4 14.9 1.7 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_AC39 PF01992.16 gi|119872562|ref|YP_930569.1| - 3.2e-17 63.1 0.3 3.9e-17 62.8 0.3 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Nnf1 PF03980.14 gi|119872563|ref|YP_930570.1| - 0.003 17.9 1.5 0.0043 17.4 1.5 1.3 1 0 0 1 1 1 1 Nnf1 V-ATPase_G_2 PF16999.5 gi|119872563|ref|YP_930570.1| - 0.0031 17.9 6.1 0.004 17.5 4.6 1.8 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit DctP PF03480.13 gi|119872563|ref|YP_930570.1| - 0.0057 16.0 4.6 0.0067 15.8 4.6 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 SIMPL PF04402.14 gi|119872563|ref|YP_930570.1| - 0.047 14.1 1.5 0.058 13.8 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) MCU PF04678.13 gi|119872563|ref|YP_930570.1| - 0.13 12.4 2.3 0.15 12.1 2.3 1.1 1 0 0 1 1 1 0 Mitochondrial calcium uniporter DUF1492 PF07374.11 gi|119872563|ref|YP_930570.1| - 0.19 11.9 5.8 0.058 13.6 2.4 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1492) ATP-synt_B PF00430.18 gi|119872563|ref|YP_930570.1| - 0.23 11.6 10.7 0.22 11.6 6.2 2.1 1 1 0 2 2 2 0 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|119872563|ref|YP_930570.1| - 0.33 11.0 11.4 1 9.5 11.4 1.8 1 1 0 1 1 1 0 DivIVA protein DUF4168 PF13767.6 gi|119872563|ref|YP_930570.1| - 0.37 12.0 6.0 0.55 11.4 6.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4168) YpjP PF14005.6 gi|119872563|ref|YP_930570.1| - 0.73 9.9 8.1 1 9.4 8.1 1.3 1 1 0 1 1 1 0 YpjP-like protein Fib_alpha PF08702.10 gi|119872563|ref|YP_930570.1| - 0.92 9.7 7.9 1.7 8.8 8.0 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family LMBR1 PF04791.16 gi|119872563|ref|YP_930570.1| - 1 8.2 5.6 1.2 7.9 5.6 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein Peptidase_M41 PF01434.18 gi|119872563|ref|YP_930570.1| - 1.4 8.7 7.1 4 7.2 2.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 Prefoldin_2 PF01920.20 gi|119872563|ref|YP_930570.1| - 3.4 7.7 16.2 14 5.7 16.2 1.9 1 1 0 1 1 1 0 Prefoldin subunit Band_7 PF01145.25 gi|119872564|ref|YP_930571.1| - 2.9e-34 118.6 2.3 4e-34 118.2 2.3 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|119872564|ref|YP_930571.1| - 0.00099 18.9 0.1 0.0029 17.3 0.0 1.8 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF5455 PF17537.2 gi|119872564|ref|YP_930571.1| - 0.017 15.5 3.6 0.039 14.4 3.6 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5455) pPIWI_RE_REase PF18154.1 gi|119872564|ref|YP_930571.1| - 0.047 13.7 1.2 0.1 12.5 0.2 1.9 2 0 0 2 2 2 0 REase associating with pPIWI_RE Glyco_hydro_80 PF13647.6 gi|119872564|ref|YP_930571.1| - 0.082 12.4 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A NfeD PF01957.18 gi|119872565|ref|YP_930572.1| - 6.5e-13 48.9 0.2 6.5e-13 48.9 0.2 2.5 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|119872565|ref|YP_930572.1| - 0.00015 20.8 0.8 0.00025 20.1 0.1 1.7 2 0 0 2 2 2 1 Serine dehydrogenase proteinase FlbD PF06289.11 gi|119872566|ref|YP_930573.1| - 0.073 12.7 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 Flagellar and Swarming motility proteins OrfB_Zn_ribbon PF07282.11 gi|119872568|ref|YP_930575.1| - 4.4e-11 42.5 0.0 9.3e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|119872568|ref|YP_930575.1| - 0.0003 20.4 2.5 0.00055 19.6 2.5 1.3 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|119872568|ref|YP_930575.1| - 0.00057 19.9 0.2 0.00081 19.4 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|119872568|ref|YP_930575.1| - 0.0012 18.5 3.3 0.002 17.7 3.3 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|119872568|ref|YP_930575.1| - 0.0012 18.8 1.0 0.62 10.1 0.0 2.4 1 1 1 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|119872568|ref|YP_930575.1| - 0.0012 18.2 2.6 0.28 10.6 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|119872568|ref|YP_930575.1| - 0.0023 17.8 0.6 0.0042 17.0 0.6 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 CpXC PF14353.6 gi|119872568|ref|YP_930575.1| - 0.0038 17.3 1.0 0.92 9.6 0.1 2.5 2 1 1 3 3 2 1 CpXC protein C1_1 PF00130.22 gi|119872568|ref|YP_930575.1| - 0.013 15.4 0.2 0.02 14.7 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|119872568|ref|YP_930575.1| - 0.015 15.3 0.9 0.021 14.9 0.9 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RPA_interact_C PF14768.6 gi|119872568|ref|YP_930575.1| - 0.016 15.8 0.2 0.038 14.6 0.1 1.7 2 0 0 2 2 1 0 Replication protein A interacting C-terminal Auto_anti-p27 PF06677.12 gi|119872568|ref|YP_930575.1| - 0.016 15.3 1.4 0.026 14.7 1.4 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.12 gi|119872568|ref|YP_930575.1| - 0.023 14.7 2.2 3.3 7.7 0.2 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger NRDD PF13597.6 gi|119872568|ref|YP_930575.1| - 0.033 13.0 0.0 0.046 12.5 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|119872568|ref|YP_930575.1| - 0.039 13.9 0.5 0.06 13.3 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|119872568|ref|YP_930575.1| - 0.051 13.3 5.9 0.18 11.6 5.9 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|119872568|ref|YP_930575.1| - 0.054 13.6 0.3 0.12 12.5 0.3 1.6 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|119872568|ref|YP_930575.1| - 0.06 13.4 1.2 9.7 6.4 0.1 2.5 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain DUF35_N PF12172.8 gi|119872568|ref|YP_930575.1| - 0.065 13.1 1.6 9.1 6.3 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PHD PF00628.29 gi|119872568|ref|YP_930575.1| - 0.086 12.8 0.3 0.14 12.0 0.3 1.3 1 0 0 1 1 1 0 PHD-finger TF_Zn_Ribbon PF08271.12 gi|119872568|ref|YP_930575.1| - 0.1 12.2 4.3 0.35 10.4 4.3 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|119872568|ref|YP_930575.1| - 0.1 13.2 7.1 2.4 8.9 0.3 2.9 2 1 1 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|119872568|ref|YP_930575.1| - 0.14 12.3 4.9 1.7 8.9 4.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119872568|ref|YP_930575.1| - 0.17 11.9 4.2 5.4 7.0 4.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119872568|ref|YP_930575.1| - 0.32 10.8 6.2 12 5.8 6.6 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|119872568|ref|YP_930575.1| - 0.46 10.6 3.4 15 5.8 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|119872568|ref|YP_930575.1| - 0.5 10.8 5.3 0.77 10.2 0.4 2.6 2 1 1 3 3 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_5 PF13719.6 gi|119872568|ref|YP_930575.1| - 1.5 8.6 5.7 14 5.5 0.6 2.4 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119872568|ref|YP_930575.1| - 1.9 8.5 7.0 16 5.6 1.0 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119872568|ref|YP_930575.1| - 4.7 7.0 6.1 8.9 6.1 0.4 2.8 3 0 0 3 3 3 0 Rubredoxin metal binding domain Pyr_redox_2 PF07992.14 gi|119872569|ref|YP_930576.1| - 5.5e-11 42.2 0.1 1.5e-10 40.8 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119872569|ref|YP_930576.1| - 1.8e-07 30.7 1.1 4.8e-05 22.8 0.0 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|119872569|ref|YP_930576.1| - 3.5e-07 29.7 0.0 0.0019 17.3 0.2 3.1 2 1 1 3 3 3 2 FAD binding domain Pyr_redox PF00070.27 gi|119872569|ref|YP_930576.1| - 8.1e-05 23.1 0.2 0.2 12.2 0.2 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119872569|ref|YP_930576.1| - 9.2e-05 22.6 0.8 0.0022 18.2 0.4 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|119872569|ref|YP_930576.1| - 0.00028 20.3 2.1 0.0025 17.1 1.3 2.5 3 0 0 3 3 3 1 FAD binding domain DAO PF01266.24 gi|119872569|ref|YP_930576.1| - 0.013 15.1 2.1 0.026 14.1 1.1 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|119872569|ref|YP_930576.1| - 0.015 14.6 0.2 0.18 11.1 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|119872569|ref|YP_930576.1| - 0.037 13.1 0.3 0.48 9.4 0.2 2.2 1 1 1 2 2 2 0 Glucose inhibited division protein A DUF5505 PF17610.2 gi|119872569|ref|YP_930576.1| - 0.046 13.7 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5505) FAD_oxidored PF12831.7 gi|119872569|ref|YP_930576.1| - 0.067 12.5 0.1 0.26 10.6 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase PGM_PMM_I PF02878.16 gi|119872570|ref|YP_930577.1| - 4e-26 91.4 0.1 6.8e-26 90.6 0.1 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|119872570|ref|YP_930577.1| - 3.9e-20 72.4 0.0 7.1e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|119872570|ref|YP_930577.1| - 2.2e-19 69.7 0.0 3.5e-19 69.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|119872570|ref|YP_930577.1| - 2.5e-12 46.8 0.1 5.8e-12 45.6 0.1 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF763 PF05559.11 gi|119872571|ref|YP_930578.1| - 3e-121 404.4 0.0 3.5e-121 404.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) OMPdecase PF00215.24 gi|119872572|ref|YP_930579.1| - 3.3e-13 49.8 0.6 5.6e-12 45.7 0.6 2.1 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Band_3_cyto PF07565.13 gi|119872572|ref|YP_930579.1| - 0.27 11.0 0.0 0.41 10.4 0.0 1.1 1 0 0 1 1 1 0 Band 3 cytoplasmic domain OrfB_Zn_ribbon PF07282.11 gi|119872573|ref|YP_930580.1| - 1.9e-11 43.7 0.0 6.7e-11 42.0 0.0 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872573|ref|YP_930580.1| - 0.013 15.2 3.6 0.026 14.2 3.6 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|119872573|ref|YP_930580.1| - 0.018 14.7 2.3 0.038 13.7 2.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|119872573|ref|YP_930580.1| - 0.026 14.6 0.1 0.048 13.7 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|119872573|ref|YP_930580.1| - 0.032 14.4 1.9 0.059 13.5 1.9 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|119872573|ref|YP_930580.1| - 0.053 13.3 1.5 0.11 12.2 1.5 1.6 1 0 0 1 1 1 0 zinc-ribbon domain RPA_interact_C PF14768.6 gi|119872573|ref|YP_930580.1| - 0.087 13.4 0.1 0.24 12.0 0.1 1.8 1 0 0 1 1 1 0 Replication protein A interacting C-terminal TF_Zn_Ribbon PF08271.12 gi|119872573|ref|YP_930580.1| - 0.13 11.8 3.2 0.29 10.7 3.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ISL3 PF14690.6 gi|119872573|ref|YP_930580.1| - 0.15 12.8 5.1 5.8 7.7 0.4 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.22 gi|119872573|ref|YP_930580.1| - 0.17 11.8 0.1 0.31 11.0 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.6 gi|119872573|ref|YP_930580.1| - 0.22 11.5 0.5 0.44 10.5 0.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|119872573|ref|YP_930580.1| - 0.66 9.5 2.0 22 4.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119872573|ref|YP_930580.1| - 3.1 7.7 4.6 28 4.6 4.8 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.11 gi|119872574|ref|YP_930581.1| - 1.5e-13 50.4 0.0 2.3e-13 49.8 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872574|ref|YP_930581.1| - 0.00029 20.4 4.6 0.00053 19.6 4.6 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|119872574|ref|YP_930581.1| - 0.0019 17.5 1.5 1 8.9 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119872574|ref|YP_930581.1| - 0.003 17.5 0.8 0.0054 16.7 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119872574|ref|YP_930581.1| - 0.0048 16.6 3.2 0.053 13.2 3.3 2.2 1 1 1 2 2 2 2 zinc-ribbon domain HypA PF01155.19 gi|119872574|ref|YP_930581.1| - 0.0065 16.5 0.1 0.0094 16.0 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NRDD PF13597.6 gi|119872574|ref|YP_930581.1| - 0.012 14.5 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.13 gi|119872574|ref|YP_930581.1| - 0.016 14.9 3.4 0.048 13.3 2.3 2.0 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|119872574|ref|YP_930581.1| - 0.017 15.2 0.6 0.031 14.4 0.6 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e CpXC PF14353.6 gi|119872574|ref|YP_930581.1| - 0.019 15.0 0.6 2.9 8.0 0.1 2.4 1 1 1 2 2 2 0 CpXC protein C1_1 PF00130.22 gi|119872574|ref|YP_930581.1| - 0.026 14.4 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RNHCP PF12647.7 gi|119872574|ref|YP_930581.1| - 0.036 14.1 0.3 0.059 13.3 0.3 1.3 1 0 0 1 1 1 0 RNHCP domain FYDLN_acid PF09538.10 gi|119872574|ref|YP_930581.1| - 0.059 14.1 0.2 0.11 13.2 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Prok-RING_1 PF14446.6 gi|119872574|ref|YP_930581.1| - 0.063 13.2 1.0 0.12 12.3 1.0 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|119872574|ref|YP_930581.1| - 0.07 12.7 2.6 0.9 9.1 0.0 2.3 1 1 2 3 3 3 0 TFIIB zinc-binding zf-Mss51 PF13824.6 gi|119872574|ref|YP_930581.1| - 0.071 13.2 0.8 0.15 12.2 0.8 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc-ribbons_6 PF07191.12 gi|119872574|ref|YP_930581.1| - 0.084 12.9 0.6 0.15 12.1 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|119872574|ref|YP_930581.1| - 0.1 12.8 1.8 0.18 12.0 1.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|119872574|ref|YP_930581.1| - 0.22 11.7 3.9 1.7 8.8 3.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|119872574|ref|YP_930581.1| - 0.22 11.4 1.9 0.46 10.4 1.9 1.5 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zf-IS66 PF13005.7 gi|119872574|ref|YP_930581.1| - 0.23 11.9 3.9 0.66 10.4 0.2 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 gi|119872574|ref|YP_930581.1| - 0.32 11.0 3.9 1.9 8.5 3.9 2.0 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|119872574|ref|YP_930581.1| - 0.44 10.5 4.6 1.5 8.9 4.5 1.9 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Ogr_Delta PF04606.12 gi|119872574|ref|YP_930581.1| - 0.49 10.4 3.6 1.6 8.8 0.3 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DUF3797 PF12677.7 gi|119872574|ref|YP_930581.1| - 0.99 9.3 3.0 8.1 6.4 0.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) zf-HYPF PF07503.12 gi|119872574|ref|YP_930581.1| - 1 9.2 7.3 1.9 8.3 4.7 2.7 2 1 0 2 2 2 0 HypF finger zf-TFIIB PF13453.6 gi|119872574|ref|YP_930581.1| - 1.1 8.7 5.2 4.2 6.8 5.2 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.9 gi|119872574|ref|YP_930581.1| - 4 7.6 6.0 78 3.5 6.0 2.3 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OTCace_N PF02729.21 gi|119872575|ref|YP_930582.1| - 1e-45 155.4 0.0 1.5e-45 154.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|119872575|ref|YP_930582.1| - 8.5e-28 97.4 0.0 1.4e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OrfB_Zn_ribbon PF07282.11 gi|119872576|ref|YP_930583.1| - 2.2e-20 72.3 0.0 4.1e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_9 PF14369.6 gi|119872576|ref|YP_930583.1| - 0.026 14.8 1.8 0.49 10.7 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon zinc_ribbon_4 PF13717.6 gi|119872576|ref|YP_930583.1| - 0.042 13.8 1.3 7.3 6.6 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|119872576|ref|YP_930583.1| - 0.079 13.2 1.5 0.78 10.0 0.2 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain Ins134_P3_kin_N PF17927.1 gi|119872576|ref|YP_930583.1| - 0.093 13.1 0.1 4 7.9 0.0 3.0 3 0 0 3 3 3 0 Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain DZR PF12773.7 gi|119872576|ref|YP_930583.1| - 0.094 12.8 0.3 0.16 12.0 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119872576|ref|YP_930583.1| - 0.12 12.4 3.2 0.28 11.2 3.2 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872576|ref|YP_930583.1| - 0.13 11.7 1.6 13 5.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF3510 PF12022.8 gi|119872576|ref|YP_930583.1| - 0.19 12.1 0.6 0.53 10.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) Zn-ribbon_8 PF09723.10 gi|119872576|ref|YP_930583.1| - 0.31 11.2 4.3 6.6 6.9 0.4 2.5 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|119872576|ref|YP_930583.1| - 0.42 10.3 7.5 0.86 9.3 7.5 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119872576|ref|YP_930583.1| - 2.1 8.2 6.6 5.7 6.8 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Acetyltransf_1 PF00583.25 gi|119872577|ref|YP_930584.1| - 1.5e-17 63.9 0.1 1.8e-17 63.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|119872577|ref|YP_930584.1| - 1.4e-11 44.7 0.1 2e-11 44.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119872577|ref|YP_930584.1| - 2.9e-10 40.1 0.1 4.7e-10 39.5 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|119872577|ref|YP_930584.1| - 1e-09 38.5 0.3 2.5e-09 37.3 0.3 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119872577|ref|YP_930584.1| - 1.8e-08 34.2 0.1 2.8e-08 33.6 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|119872577|ref|YP_930584.1| - 0.00046 19.9 0.0 0.0007 19.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|119872577|ref|YP_930584.1| - 0.00091 19.4 0.1 0.0025 18.0 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119872577|ref|YP_930584.1| - 0.016 15.9 0.1 0.025 15.3 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|119872577|ref|YP_930584.1| - 0.098 12.3 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) GNAT_acetyltran PF12746.7 gi|119872577|ref|YP_930584.1| - 0.11 12.1 0.0 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 GNAT acetyltransferase T2SSE PF00437.20 gi|119872579|ref|YP_930586.1| - 4.7e-36 124.3 0.0 6.8e-36 123.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|119872579|ref|YP_930586.1| - 0.00023 20.8 0.0 0.00067 19.3 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|119872579|ref|YP_930586.1| - 0.00041 19.9 0.0 0.00082 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|119872579|ref|YP_930586.1| - 0.0018 18.6 0.0 0.0045 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119872579|ref|YP_930586.1| - 0.0022 18.5 0.1 0.0045 17.5 0.1 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|119872579|ref|YP_930586.1| - 0.0025 18.3 0.0 0.0048 17.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_28 PF13521.6 gi|119872579|ref|YP_930586.1| - 0.0027 18.0 0.9 0.0063 16.8 0.2 2.0 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|119872579|ref|YP_930586.1| - 0.0074 15.7 0.2 0.016 14.6 0.1 1.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family MMR_HSR1 PF01926.23 gi|119872579|ref|YP_930586.1| - 0.011 15.9 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|119872579|ref|YP_930586.1| - 0.011 16.0 0.0 0.034 14.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|119872579|ref|YP_930586.1| - 0.018 14.0 0.1 0.028 13.3 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|119872579|ref|YP_930586.1| - 0.03 14.7 0.0 0.056 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_21 PF13304.6 gi|119872579|ref|YP_930586.1| - 0.031 14.1 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|119872579|ref|YP_930586.1| - 0.035 14.0 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PduV-EutP PF10662.9 gi|119872579|ref|YP_930586.1| - 0.04 13.7 0.1 0.068 12.9 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation IstB_IS21 PF01695.17 gi|119872579|ref|YP_930586.1| - 0.048 13.4 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.19 gi|119872579|ref|YP_930586.1| - 0.057 13.0 0.1 0.096 12.3 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|119872579|ref|YP_930586.1| - 0.062 12.7 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.14 gi|119872579|ref|YP_930586.1| - 0.1 12.5 0.2 0.2 11.5 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.6 gi|119872579|ref|YP_930586.1| - 0.12 12.1 0.1 0.26 11.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|119872579|ref|YP_930586.1| - 0.13 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119872579|ref|YP_930586.1| - 0.15 12.0 0.2 0.26 11.2 0.2 1.4 1 0 0 1 1 1 0 NACHT domain Pox_A32 PF04665.12 gi|119872579|ref|YP_930586.1| - 0.15 11.5 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein Septin PF00735.18 gi|119872579|ref|YP_930586.1| - 0.18 11.1 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Septin DUF2759 PF10958.8 gi|119872580|ref|YP_930587.1| - 0.4 10.4 4.8 0.91 9.3 4.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2759) TGT PF01702.18 gi|119872581|ref|YP_930588.1| - 1.2e-61 208.8 0.0 1.7e-61 208.3 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|119872581|ref|YP_930588.1| - 3.1e-07 30.4 0.0 8.3e-07 29.0 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C1 PF14809.6 gi|119872581|ref|YP_930588.1| - 0.023 15.0 0.2 0.062 13.6 0.2 1.7 1 0 0 1 1 1 0 C1 domain of tRNA-guanine transglycosylase dimerisation FUSC PF04632.12 gi|119872581|ref|YP_930588.1| - 0.16 10.5 0.1 0.22 10.0 0.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family PAC2 PF09754.9 gi|119872582|ref|YP_930589.1| - 2.9e-31 109.1 0.0 3.4e-31 108.9 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TFIIE_alpha PF02002.17 gi|119872583|ref|YP_930590.1| - 1.1e-06 28.5 2.4 1.8e-06 27.7 2.4 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit TF_Zn_Ribbon PF08271.12 gi|119872583|ref|YP_930590.1| - 0.00016 21.1 1.4 0.00035 20.0 1.4 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|119872583|ref|YP_930590.1| - 0.0065 16.5 0.4 0.091 12.8 0.1 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.6 gi|119872583|ref|YP_930590.1| - 0.021 14.7 0.9 0.23 11.4 0.9 2.5 1 1 0 1 1 1 0 zinc-ribbon domain Rio2_N PF09202.11 gi|119872583|ref|YP_930590.1| - 0.024 14.9 1.0 0.11 12.8 0.2 2.1 1 1 1 2 2 2 0 Rio2, N-terminal HypA PF01155.19 gi|119872583|ref|YP_930590.1| - 0.034 14.2 0.3 0.041 13.9 0.3 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|119872583|ref|YP_930590.1| - 0.055 13.1 0.1 0.081 12.6 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Trans_reg_C PF00486.28 gi|119872583|ref|YP_930590.1| - 0.073 13.2 0.4 0.14 12.2 0.4 1.5 1 0 0 1 1 1 0 Transcriptional regulatory protein, C terminal YacG PF03884.14 gi|119872583|ref|YP_930590.1| - 0.091 12.5 1.0 6.2 6.6 0.1 2.8 3 0 0 3 3 3 0 DNA gyrase inhibitor YacG DZR PF12773.7 gi|119872583|ref|YP_930590.1| - 0.1 12.6 0.5 0.28 11.2 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-C2H2_3 PF13878.6 gi|119872583|ref|YP_930590.1| - 0.1 12.4 4.4 0.17 11.7 0.5 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO PhnA_Zn_Ribbon PF08274.12 gi|119872583|ref|YP_930590.1| - 0.12 12.4 3.7 0.81 9.7 0.4 2.3 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zinc-ribbons_6 PF07191.12 gi|119872583|ref|YP_930590.1| - 0.12 12.4 0.1 0.21 11.6 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbons RPA_interact_C PF14768.6 gi|119872583|ref|YP_930590.1| - 0.13 12.9 0.1 0.21 12.2 0.1 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-TFIIB PF13453.6 gi|119872583|ref|YP_930590.1| - 0.16 11.3 0.2 6.4 6.2 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Cys_rich_CPCC PF14206.6 gi|119872583|ref|YP_930590.1| - 0.17 11.7 0.8 0.36 10.7 0.8 1.5 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-C2H2_9 PF16293.5 gi|119872583|ref|YP_930590.1| - 0.2 11.5 0.3 18 5.3 0.0 2.5 2 0 0 2 2 2 0 C2H2 type zinc-finger (1 copy) zf-Di19 PF05605.12 gi|119872583|ref|YP_930590.1| - 0.29 11.5 2.0 11 6.4 0.2 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Rad50_zn_hook PF04423.14 gi|119872583|ref|YP_930590.1| - 0.43 10.4 0.1 0.43 10.4 0.1 2.8 2 2 0 2 2 2 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.7 gi|119872583|ref|YP_930590.1| - 1.5 8.8 3.4 11 6.1 0.2 2.3 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-HIT PF04438.16 gi|119872583|ref|YP_930590.1| - 2 8.4 5.0 2.4 8.1 1.3 2.1 2 0 0 2 2 2 0 HIT zinc finger TrmB PF01978.19 gi|119872583|ref|YP_930590.1| - 3.4 7.6 6.6 0.73 9.8 0.1 2.6 4 0 0 4 4 2 0 Sugar-specific transcriptional regulator TrmB GTP-bdg_N PF13167.6 gi|119872584|ref|YP_930591.1| - 9e-18 64.7 0.3 5.8e-17 62.2 0.0 2.3 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal GTP-bdg_M PF16360.5 gi|119872584|ref|YP_930591.1| - 7.4e-17 61.7 2.3 1.4e-16 60.9 2.3 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|119872584|ref|YP_930591.1| - 2.3e-16 59.9 0.1 4.5e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|119872584|ref|YP_930591.1| - 2.9e-07 30.1 0.1 4.8e-07 29.4 0.1 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|119872584|ref|YP_930591.1| - 2.4e-05 24.0 0.3 0.0071 15.9 0.1 2.6 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain MMR_HSR1_Xtn PF16897.5 gi|119872584|ref|YP_930591.1| - 0.00056 19.9 0.0 0.0012 18.9 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|119872584|ref|YP_930591.1| - 0.00099 19.1 0.2 1.8 8.4 0.0 2.6 3 0 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|119872584|ref|YP_930591.1| - 0.0018 18.4 0.1 0.054 13.5 0.0 2.3 1 1 1 2 2 2 1 Dynamin family cobW PF02492.19 gi|119872584|ref|YP_930591.1| - 0.002 17.7 2.3 0.21 11.2 0.2 2.5 1 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|119872584|ref|YP_930591.1| - 0.0037 17.5 0.0 3.6 7.8 0.0 2.3 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|119872584|ref|YP_930591.1| - 0.017 14.9 0.5 1.4 8.7 0.5 2.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation TPD52 PF04201.15 gi|119872584|ref|YP_930591.1| - 0.073 12.7 0.5 0.63 9.6 0.0 2.4 3 0 0 3 3 3 0 Tumour protein D52 family T2SSE PF00437.20 gi|119872584|ref|YP_930591.1| - 0.11 11.5 0.0 0.21 10.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_3 PF01381.22 gi|119872585|ref|YP_930592.1| - 3.6e-14 52.6 1.7 2e-13 50.2 1.8 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|119872585|ref|YP_930592.1| - 7.9e-10 38.9 0.6 4.9e-09 36.4 0.3 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|119872585|ref|YP_930592.1| - 2.4e-08 33.8 1.3 4.9e-07 29.7 0.6 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|119872585|ref|YP_930592.1| - 6.8e-08 32.3 0.9 1.6e-06 27.8 0.5 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|119872585|ref|YP_930592.1| - 0.0025 17.9 0.6 0.0061 16.7 0.6 1.8 1 1 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Arc_trans_TRASH PF08394.10 gi|119872585|ref|YP_930592.1| - 0.0032 17.8 0.9 0.0048 17.2 0.9 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_37 PF13744.6 gi|119872585|ref|YP_930592.1| - 0.009 16.0 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TGT_C2 PF14810.6 gi|119872586|ref|YP_930593.1| - 1.3e-13 50.9 0.1 2.1e-13 50.2 0.1 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|119872586|ref|YP_930593.1| - 1.3e-12 47.5 1.1 2.2e-12 46.7 0.4 1.7 2 0 0 2 2 2 1 PUA domain UPF0113 PF03657.13 gi|119872586|ref|YP_930593.1| - 5.6e-08 32.9 0.1 3.7e-07 30.3 0.0 2.0 2 0 0 2 2 2 1 UPF0113 PUA domain TruB_C PF09142.11 gi|119872586|ref|YP_930593.1| - 0.00091 19.0 0.1 0.0026 17.5 0.1 1.7 1 1 0 1 1 1 1 tRNA Pseudouridine synthase II, C terminal TruB-C_2 PF09157.11 gi|119872586|ref|YP_930593.1| - 0.062 13.3 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Pseudouridine synthase II TruB, C-terminal Sen15 PF09631.10 gi|119872588|ref|YP_930595.1| - 0.001 19.3 0.4 0.0028 17.9 0.4 1.9 1 1 0 1 1 1 1 Sen15 protein tRNA_int_endo PF01974.17 gi|119872588|ref|YP_930595.1| - 0.026 14.6 0.0 0.066 13.3 0.0 1.7 1 1 0 1 1 1 0 tRNA intron endonuclease, catalytic C-terminal domain LSM PF01423.22 gi|119872589|ref|YP_930596.1| - 3.4e-22 77.9 0.1 3.8e-22 77.8 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|119872589|ref|YP_930596.1| - 0.00059 19.9 0.0 0.00066 19.8 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|119872589|ref|YP_930596.1| - 0.022 14.9 0.1 0.033 14.3 0.0 1.3 1 1 0 1 1 1 0 RimP C-terminal SH3 domain Hfq PF17209.3 gi|119872589|ref|YP_930596.1| - 0.039 13.6 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Hfq protein DUF1320 PF07030.12 gi|119872589|ref|YP_930596.1| - 0.062 13.4 0.0 0.075 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) TFIIA_gamma_N PF02268.16 gi|119872589|ref|YP_930596.1| - 0.16 12.0 0.3 0.52 10.4 0.3 1.8 1 1 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain Ribosomal_L37e PF01907.19 gi|119872590|ref|YP_930597.1| - 9.1e-23 80.2 14.6 9.7e-23 80.1 14.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|119872590|ref|YP_930597.1| - 0.0023 17.9 1.6 0.003 17.6 1.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119872590|ref|YP_930597.1| - 0.0029 17.0 2.3 0.31 10.5 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DUF2752 PF10825.8 gi|119872590|ref|YP_930597.1| - 0.018 15.1 0.9 4.7 7.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) NOB1_Zn_bind PF08772.11 gi|119872590|ref|YP_930597.1| - 0.023 14.8 2.5 0.03 14.5 2.5 1.3 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like SelR PF01641.18 gi|119872590|ref|YP_930597.1| - 0.031 14.4 0.5 0.034 14.2 0.5 1.1 1 0 0 1 1 1 0 SelR domain Zn_Tnp_IS91 PF14319.6 gi|119872590|ref|YP_930597.1| - 0.035 14.2 4.1 0.038 14.0 4.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-NADH-PPase PF09297.11 gi|119872590|ref|YP_930597.1| - 0.037 13.7 5.0 0.41 10.3 0.8 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain GcpE PF04551.14 gi|119872590|ref|YP_930597.1| - 0.06 12.4 0.5 0.067 12.3 0.5 1.0 1 0 0 1 1 1 0 GcpE protein zinc_ribbon_2 PF13240.6 gi|119872590|ref|YP_930597.1| - 0.1 12.3 5.4 0.27 11.0 5.4 1.6 1 1 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119872590|ref|YP_930597.1| - 0.11 12.7 2.0 4.3 7.6 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|119872590|ref|YP_930597.1| - 0.15 12.1 0.8 0.17 11.9 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MraY_sig1 PF10555.9 gi|119872590|ref|YP_930597.1| - 0.23 11.1 1.3 0.32 10.6 1.3 1.3 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 YhfH PF14149.6 gi|119872590|ref|YP_930597.1| - 0.25 11.3 3.5 1.6 8.8 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein MarC PF01914.17 gi|119872591|ref|YP_930598.1| - 8.5e-32 110.2 16.9 1.1e-31 109.9 16.9 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein DUF2139 PF09910.9 gi|119872591|ref|YP_930598.1| - 0.14 11.3 0.7 2.7 7.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2139) ETRAMP PF09716.10 gi|119872591|ref|YP_930598.1| - 0.41 10.7 0.1 0.41 10.7 0.1 2.5 3 0 0 3 3 3 0 Malarial early transcribed membrane protein (ETRAMP) ParA PF10609.9 gi|119872592|ref|YP_930599.1| - 1.5e-84 283.3 0.0 1.7e-84 283.1 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|119872592|ref|YP_930599.1| - 8.3e-11 42.0 0.0 1.9e-10 40.9 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|119872592|ref|YP_930599.1| - 0.00049 19.4 2.9 0.0016 17.7 1.7 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|119872592|ref|YP_930599.1| - 0.00082 19.3 0.5 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_31 PF13614.6 gi|119872592|ref|YP_930599.1| - 0.00097 19.1 0.6 0.0022 18.0 0.6 1.7 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|119872592|ref|YP_930599.1| - 0.0065 15.9 0.3 0.081 12.4 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|119872592|ref|YP_930599.1| - 0.014 15.0 0.2 0.029 14.0 0.2 1.5 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|119872592|ref|YP_930599.1| - 0.016 14.2 0.8 0.03 13.3 0.8 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MipZ PF09140.11 gi|119872592|ref|YP_930599.1| - 0.025 13.9 0.0 0.04 13.2 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ APS_kinase PF01583.20 gi|119872592|ref|YP_930599.1| - 0.062 13.2 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase dCMP_cyt_deam_1 PF00383.23 gi|119872593|ref|YP_930600.1| - 1.8e-18 66.3 0.1 2.2e-18 66.0 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|119872593|ref|YP_930600.1| - 2.6e-11 43.8 0.0 4.3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|119872593|ref|YP_930600.1| - 0.00013 21.7 0.6 0.026 14.1 0.1 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases XOO_2897-deam PF14440.6 gi|119872593|ref|YP_930600.1| - 0.012 15.7 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase EndIII_4Fe-2S PF10576.9 gi|119872596|ref|YP_930603.1| - 0.062 13.6 1.8 0.11 12.9 1.8 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III adh_short_C2 PF13561.6 gi|119872597|ref|YP_930604.1| - 8e-53 179.4 0.0 1.1e-52 178.9 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|119872597|ref|YP_930604.1| - 3.2e-42 144.2 0.0 4e-42 143.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|119872597|ref|YP_930604.1| - 3.4e-08 33.6 0.0 5.8e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|119872597|ref|YP_930604.1| - 0.0003 20.7 0.0 0.00042 20.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|119872597|ref|YP_930604.1| - 0.00037 20.7 0.0 0.00073 19.8 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Spore_IV_A PF09547.10 gi|119872597|ref|YP_930604.1| - 0.003 16.6 0.0 0.0044 16.0 0.0 1.2 1 0 0 1 1 1 1 Stage IV sporulation protein A (spore_IV_A) F420_oxidored PF03807.17 gi|119872597|ref|YP_930604.1| - 0.06 13.9 0.1 0.15 12.6 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF1598 PF07643.11 gi|119872597|ref|YP_930604.1| - 0.14 12.4 0.1 15 5.9 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1598) DUF4853 PF16145.5 gi|119872597|ref|YP_930604.1| - 0.17 12.0 0.0 2.7 8.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4853) SHMT PF00464.19 gi|119872598|ref|YP_930605.1| - 5e-73 246.0 0.0 6.4e-73 245.6 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|119872598|ref|YP_930605.1| - 1.5e-07 31.0 0.0 4.3e-07 29.4 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|119872598|ref|YP_930605.1| - 1.6e-06 27.7 0.1 5.2e-06 26.0 0.1 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|119872598|ref|YP_930605.1| - 1.3e-05 24.6 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|119872598|ref|YP_930605.1| - 0.031 13.2 0.0 0.54 9.2 0.0 2.2 1 1 0 2 2 2 0 Aminotransferase class-V MoaC PF01967.21 gi|119872599|ref|YP_930606.1| - 1.2e-17 64.2 0.0 5.1e-09 36.3 0.0 3.4 1 1 2 3 3 3 3 MoaC family TF_Zn_Ribbon PF08271.12 gi|119872600|ref|YP_930607.1| - 2.3e-06 27.0 0.1 4e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIS_C PF01096.18 gi|119872600|ref|YP_930607.1| - 0.00026 20.8 0.7 0.39 10.6 0.2 2.4 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.11 gi|119872600|ref|YP_930607.1| - 0.0028 17.5 0.7 0.0066 16.3 0.7 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|119872600|ref|YP_930607.1| - 0.01 15.8 1.5 0.01 15.8 1.5 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|119872600|ref|YP_930607.1| - 0.012 15.1 2.2 0.39 10.4 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|119872600|ref|YP_930607.1| - 0.014 15.1 3.4 0.41 10.4 0.7 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|119872600|ref|YP_930607.1| - 0.019 14.6 1.3 1.1 9.0 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|119872600|ref|YP_930607.1| - 0.024 14.7 1.0 0.064 13.3 1.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|119872600|ref|YP_930607.1| - 0.029 14.5 1.8 5.3 7.3 0.0 2.6 3 0 0 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|119872600|ref|YP_930607.1| - 0.03 14.3 0.9 0.11 12.4 0.9 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-IS66 PF13005.7 gi|119872600|ref|YP_930607.1| - 0.047 14.1 0.3 8.7 6.8 0.0 2.5 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|119872600|ref|YP_930607.1| - 0.051 13.0 1.6 1 8.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|119872600|ref|YP_930607.1| - 0.069 13.3 2.6 2 8.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2318 PF10080.9 gi|119872600|ref|YP_930607.1| - 0.07 13.3 0.1 0.13 12.4 0.1 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DNA_RNApol_7kD PF03604.13 gi|119872600|ref|YP_930607.1| - 0.07 12.8 4.1 0.35 10.6 4.1 2.0 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit YueH PF14166.6 gi|119872600|ref|YP_930607.1| - 0.082 12.8 0.3 0.12 12.2 0.3 1.4 1 0 0 1 1 1 0 YueH-like protein Nudix_N_2 PF14803.6 gi|119872600|ref|YP_930607.1| - 0.32 10.9 4.5 5.7 7.0 4.7 2.3 1 1 1 2 2 2 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|119872600|ref|YP_930607.1| - 0.37 10.5 3.1 4.2 7.2 0.2 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.11 gi|119872600|ref|YP_930607.1| - 1.1 9.0 5.2 0.92 9.2 0.4 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119872600|ref|YP_930607.1| - 2.2 8.2 5.6 3 7.8 0.6 2.4 2 0 0 2 2 2 0 zinc-ribbon domain FMN_dh PF01070.18 gi|119872601|ref|YP_930608.1| - 1.3e-23 83.7 3.0 2.4e-22 79.5 3.0 2.0 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|119872601|ref|YP_930608.1| - 2.3e-08 33.5 3.1 0.00011 21.3 2.3 3.1 1 1 1 2 2 2 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|119872601|ref|YP_930608.1| - 2.6e-05 23.5 2.0 9.6e-05 21.7 1.6 2.1 2 1 0 2 2 2 1 Conserved region in glutamate synthase Ribosomal_L2_C PF03947.18 gi|119872602|ref|YP_930609.1| - 4e-39 133.7 3.3 5.8e-39 133.2 3.3 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|119872602|ref|YP_930609.1| - 6.2e-12 45.3 0.0 1.7e-11 43.9 0.0 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S17e PF00833.18 gi|119872603|ref|YP_930610.1| - 6.2e-19 68.1 0.2 6.9e-19 68.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 FKBP26_C PF18046.1 gi|119872604|ref|YP_930611.1| - 7.7e-12 45.1 0.1 1.6e-11 44.1 0.1 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|119872604|ref|YP_930611.1| - 5e-05 23.5 0.0 9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CorC_HlyC PF03471.17 gi|119872604|ref|YP_930611.1| - 0.048 13.7 0.4 2.2 8.3 0.0 3.1 3 0 0 3 3 3 0 Transporter associated domain Proteasome PF00227.26 gi|119872605|ref|YP_930612.1| - 2.1e-52 177.4 0.2 2.4e-52 177.2 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit Enolase_C PF00113.22 gi|119872606|ref|YP_930613.1| - 5.7e-52 176.8 0.0 7.8e-52 176.3 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|119872606|ref|YP_930613.1| - 4.3e-26 91.6 0.0 1e-25 90.4 0.0 1.7 2 0 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|119872606|ref|YP_930613.1| - 1.9e-07 30.8 0.0 3.5e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like HTH_1 PF00126.27 gi|119872607|ref|YP_930614.1| - 3.4e-14 52.5 0.0 4.8e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|119872607|ref|YP_930614.1| - 0.0023 17.9 0.0 0.0037 17.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix MbeD_MobD PF04899.12 gi|119872607|ref|YP_930614.1| - 0.0048 17.0 0.3 0.007 16.5 0.3 1.2 1 0 0 1 1 1 1 MbeD/MobD like HTH_11 PF08279.12 gi|119872607|ref|YP_930614.1| - 0.012 15.5 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 HTH domain NUMOD1 PF07453.13 gi|119872607|ref|YP_930614.1| - 0.03 14.6 0.0 0.075 13.3 0.0 1.7 1 0 0 1 1 1 0 NUMOD1 domain HTH_8 PF02954.19 gi|119872607|ref|YP_930614.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_23 PF13384.6 gi|119872607|ref|YP_930614.1| - 0.12 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain DUF1805 PF08827.11 gi|119872607|ref|YP_930614.1| - 0.12 12.7 0.1 0.72 10.2 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF1805) Mob_synth_C PF06463.13 gi|119872608|ref|YP_930615.1| - 1.5e-24 86.3 0.0 2.2e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.21 gi|119872608|ref|YP_930615.1| - 6.1e-22 78.8 0.0 9.2e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119872608|ref|YP_930615.1| - 4.7e-05 23.5 0.0 0.00017 21.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119872608|ref|YP_930615.1| - 0.00042 20.6 0.0 0.0012 19.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Pkinase PF00069.25 gi|119872609|ref|YP_930616.1| - 3.1e-43 148.0 0.0 7.4e-43 146.8 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|119872609|ref|YP_930616.1| - 7.7e-25 87.6 0.0 1.3e-24 86.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase FTA2 PF13095.6 gi|119872609|ref|YP_930616.1| - 0.00035 20.3 0.1 0.12 12.0 0.0 2.2 2 0 0 2 2 2 2 Kinetochore Sim4 complex subunit FTA2 Kinase-like PF14531.6 gi|119872609|ref|YP_930616.1| - 0.0026 17.1 0.0 0.0056 16.0 0.0 1.5 2 0 0 2 2 2 1 Kinase-like APH PF01636.23 gi|119872609|ref|YP_930616.1| - 0.021 14.8 0.2 1.5 8.7 0.1 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.14 gi|119872609|ref|YP_930616.1| - 0.023 14.0 0.0 0.034 13.5 0.0 1.1 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family FHA PF00498.26 gi|119872610|ref|YP_930617.1| - 3.4e-14 52.9 0.2 5.1e-14 52.4 0.2 1.3 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|119872610|ref|YP_930617.1| - 5.4e-13 49.1 0.0 7e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zf-RanBP PF00641.18 gi|119872610|ref|YP_930617.1| - 2.1e-07 30.1 0.2 3.1e-07 29.6 0.2 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|119872610|ref|YP_930617.1| - 0.00012 21.4 1.3 0.00021 20.6 1.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119872610|ref|YP_930617.1| - 0.0016 18.1 0.8 0.0026 17.4 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain RecR PF02132.15 gi|119872610|ref|YP_930617.1| - 0.015 14.9 2.0 0.027 14.0 2.0 1.3 1 0 0 1 1 1 0 RecR protein DZR PF12773.7 gi|119872610|ref|YP_930617.1| - 0.031 14.3 0.4 0.047 13.7 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zf_RING PF16744.5 gi|119872610|ref|YP_930617.1| - 0.034 14.3 0.3 0.053 13.6 0.3 1.3 1 0 0 1 1 1 0 KIAA1045 RING finger zf-tcix PF14952.6 gi|119872610|ref|YP_930617.1| - 0.087 12.4 2.6 0.45 10.2 2.6 2.0 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding RPOL_N PF14700.6 gi|119872610|ref|YP_930617.1| - 0.15 11.5 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase N-terminal zf-nanos PF05741.13 gi|119872610|ref|YP_930617.1| - 0.16 12.3 0.8 1.1 9.6 0.1 2.1 2 0 0 2 2 2 0 Nanos RNA binding domain Prok-RING_1 PF14446.6 gi|119872610|ref|YP_930617.1| - 0.19 11.7 1.2 0.31 11.0 1.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.12 gi|119872610|ref|YP_930617.1| - 0.45 10.1 3.7 0.3 10.6 1.4 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zf-Sec23_Sec24 PF04810.15 gi|119872610|ref|YP_930617.1| - 1.1 9.4 3.3 2.3 8.4 0.2 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Vps36-NZF-N PF16988.5 gi|119872610|ref|YP_930617.1| - 1.7 8.1 4.9 24 4.4 4.9 2.2 1 1 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain Ribosomal_S2 PF00318.20 gi|119872611|ref|YP_930618.1| - 1.5e-26 92.9 0.0 3.1e-17 62.6 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 SRPRB PF09439.10 gi|119872611|ref|YP_930618.1| - 0.058 12.8 0.0 0.084 12.3 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PHP PF02811.19 gi|119872611|ref|YP_930618.1| - 0.064 13.6 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 PHP domain Memo PF01875.17 gi|119872612|ref|YP_930619.1| - 1.3e-77 260.6 0.0 1.4e-77 260.5 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|119872612|ref|YP_930619.1| - 1.5e-05 24.2 0.0 2.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PK PF00224.21 gi|119872613|ref|YP_930620.1| - 1.5e-65 221.4 0.0 1.8e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|119872613|ref|YP_930620.1| - 2.9e-10 40.4 0.2 7.3e-09 35.9 0.0 2.8 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain Beta-Casp PF10996.8 gi|119872614|ref|YP_930621.1| - 9.3e-25 87.1 0.0 3.1e-24 85.4 0.0 1.9 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|119872614|ref|YP_930621.1| - 7.2e-18 64.3 0.3 3.6e-17 62.1 0.1 2.2 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|119872614|ref|YP_930621.1| - 3.5e-16 59.2 0.0 1.1e-15 57.6 0.0 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain KH_7 PF17214.3 gi|119872614|ref|YP_930621.1| - 6.6e-12 45.2 0.6 2.9e-11 43.2 0.0 2.5 2 0 0 2 2 2 1 KH domain Lactamase_B_2 PF12706.7 gi|119872614|ref|YP_930621.1| - 1.1e-11 44.7 0.0 2.8e-11 43.3 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|119872614|ref|YP_930621.1| - 1.3e-10 41.6 0.6 1.3e-09 38.4 0.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|119872614|ref|YP_930621.1| - 0.1 12.5 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Beta-lactamase superfamily domain DRMBL PF07522.14 gi|119872614|ref|YP_930621.1| - 0.17 12.1 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase tRNA-synt_1e PF01406.19 gi|119872615|ref|YP_930622.1| - 2.8e-115 384.8 0.0 6.5e-115 383.6 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|119872615|ref|YP_930622.1| - 6.2e-09 35.1 0.4 7.5e-05 21.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|119872615|ref|YP_930622.1| - 3.2e-08 32.3 0.0 1.2e-07 30.4 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|119872615|ref|YP_930622.1| - 1.1e-07 32.3 0.0 4.8e-07 30.2 0.0 2.2 1 0 0 1 1 1 1 DALR domain tRNA-synt_1f PF01921.18 gi|119872615|ref|YP_930622.1| - 7.5e-07 28.4 0.1 0.00055 19.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1c PF00749.21 gi|119872615|ref|YP_930622.1| - 0.012 14.5 0.6 0.04 12.8 0.1 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain Tox-REase-7 PF15649.6 gi|119872615|ref|YP_930622.1| - 0.034 14.4 0.1 0.094 13.0 0.1 1.7 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 7 PilJ_C PF18223.1 gi|119872615|ref|YP_930622.1| - 0.094 13.2 0.4 0.21 12.1 0.4 1.5 1 0 0 1 1 1 0 Pili PilJ C-terminal domain PhaP_Bmeg PF09602.10 gi|119872615|ref|YP_930622.1| - 0.57 10.1 2.8 1.3 9.0 1.0 2.4 3 1 0 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) T2SSN PF01203.19 gi|119872617|ref|YP_930624.1| - 0.2 11.9 0.0 0.6 10.3 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein N CarboxypepD_reg PF13620.6 gi|119872618|ref|YP_930625.1| - 0.0031 17.8 31.3 0.55 10.5 1.1 8.0 7 1 1 8 8 8 3 Carboxypeptidase regulatory-like domain DUF824 PF05688.11 gi|119872618|ref|YP_930625.1| - 0.02 14.7 0.9 0.12 12.2 0.1 2.8 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Invasin_D3 PF09134.10 gi|119872618|ref|YP_930625.1| - 0.38 11.1 35.9 1.6 9.1 0.1 8.3 7 1 2 9 9 9 0 Invasin, domain 3 AMMECR1 PF01871.17 gi|119872619|ref|YP_930626.1| - 2.9e-09 36.8 0.0 3.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF3809 PF12723.7 gi|119872619|ref|YP_930626.1| - 0.064 13.6 0.0 0.16 12.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3809) DUF1525 PF07511.11 gi|119872620|ref|YP_930627.1| - 0.0009 19.4 0.3 0.0017 18.5 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.6 gi|119872620|ref|YP_930627.1| - 0.11 12.5 1.0 0.31 11.1 0.0 2.2 3 0 0 3 3 3 0 Thioredoxin domain CYTH PF01928.21 gi|119872621|ref|YP_930628.1| - 4.6e-34 117.9 0.2 5.3e-34 117.7 0.2 1.0 1 0 0 1 1 1 1 CYTH domain Glyoxalase_5 PF14696.6 gi|119872621|ref|YP_930628.1| - 0.00013 22.1 0.1 0.00048 20.3 0.0 1.8 2 0 0 2 2 2 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Cyclophil_like PF04126.13 gi|119872621|ref|YP_930628.1| - 0.14 12.0 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Cyclophilin-like HEPN_Toprim_N PF18871.1 gi|119872621|ref|YP_930628.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 HEPN/Toprim N-terminal domain 1 DNA_ligase_A_M PF01068.21 gi|119872622|ref|YP_930629.1| - 2.6e-65 219.9 0.0 3.9e-65 219.3 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|119872622|ref|YP_930629.1| - 5e-39 134.4 0.1 1.6e-37 129.5 0.1 2.2 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|119872622|ref|YP_930629.1| - 1.3e-24 86.6 0.0 1.1e-23 83.7 0.0 2.2 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|119872622|ref|YP_930629.1| - 2.5e-07 31.2 0.1 3.9e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DUF3361 PF11841.8 gi|119872622|ref|YP_930629.1| - 0.02 14.8 0.1 7.7 6.4 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3361) DNA_ligase_OB_2 PF14743.6 gi|119872622|ref|YP_930629.1| - 0.075 13.1 0.4 0.43 10.7 0.0 2.5 4 0 0 4 4 4 0 DNA ligase OB-like domain Lzipper-MIP1 PF14389.6 gi|119872623|ref|YP_930630.1| - 0.15 12.3 4.4 0.12 12.7 0.8 2.2 2 1 0 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 PfkB PF00294.24 gi|119872624|ref|YP_930631.1| - 9.9e-56 189.2 0.3 1.2e-55 189.0 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|119872624|ref|YP_930631.1| - 0.0014 18.1 0.1 0.0022 17.4 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase FMN_dh PF01070.18 gi|119872624|ref|YP_930631.1| - 0.055 12.5 0.4 0.075 12.1 0.4 1.1 1 0 0 1 1 1 0 FMN-dependent dehydrogenase NTP_transferase PF00483.23 gi|119872626|ref|YP_930633.1| - 5.3e-25 88.4 0.0 6.6e-25 88.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119872626|ref|YP_930633.1| - 4.3e-10 40.2 0.0 5.8e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain CdvA PF18822.1 gi|119872627|ref|YP_930634.1| - 3.7e-06 26.8 12.8 0.0023 17.7 1.7 3.1 2 1 1 3 3 3 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|119872627|ref|YP_930634.1| - 0.00059 19.5 4.5 0.00059 19.5 4.5 3.2 3 0 0 3 3 3 1 Short C-terminal domain Syntaxin-6_N PF09177.11 gi|119872627|ref|YP_930634.1| - 0.41 11.2 4.4 0.35 11.4 0.3 2.5 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Uso1_p115_C PF04871.13 gi|119872627|ref|YP_930634.1| - 2.6 8.4 11.8 0.86 10.0 7.9 2.0 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region DUF883 PF05957.13 gi|119872627|ref|YP_930634.1| - 2.7 8.7 5.3 24 5.6 0.5 2.8 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) GreA_GreB_N PF03449.15 gi|119872627|ref|YP_930634.1| - 2.7 8.2 8.8 1.2 9.3 1.5 3.5 4 0 0 4 4 4 0 Transcription elongation factor, N-terminal GvpG PF05120.12 gi|119872627|ref|YP_930634.1| - 3.1 7.9 6.4 0.33 11.0 0.9 2.2 2 1 0 2 2 2 0 Gas vesicle protein G DMAP_binding PF06464.11 gi|119872627|ref|YP_930634.1| - 8.8 7.2 8.8 2 9.3 4.5 2.0 2 1 0 2 2 2 0 DMAP1-binding Domain LXG PF04740.12 gi|119872628|ref|YP_930635.1| - 0.0012 18.6 1.4 0.0069 16.1 0.5 2.1 1 1 1 2 2 2 1 LXG domain of WXG superfamily FliJ PF02050.16 gi|119872628|ref|YP_930635.1| - 0.0056 16.9 2.2 1.8 8.8 0.0 2.5 2 1 0 2 2 2 1 Flagellar FliJ protein CdvA PF18822.1 gi|119872628|ref|YP_930635.1| - 0.0075 16.1 9.3 0.11 12.3 5.2 2.7 2 1 0 2 2 2 1 CdvA-like coiled-coil domain DUF1908 PF08926.11 gi|119872628|ref|YP_930635.1| - 0.0089 15.1 1.9 0.0095 15.1 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1908) MbeD_MobD PF04899.12 gi|119872628|ref|YP_930635.1| - 0.019 15.0 0.4 0.32 11.2 0.1 2.2 2 0 0 2 2 2 0 MbeD/MobD like Snapin_Pallidin PF14712.6 gi|119872628|ref|YP_930635.1| - 0.022 15.1 2.4 0.37 11.2 0.0 2.9 3 1 0 3 3 2 0 Snapin/Pallidin GldM_N PF12081.8 gi|119872628|ref|YP_930635.1| - 0.034 14.2 2.1 0.65 10.1 2.1 2.2 1 1 0 1 1 1 0 GldM N-terminal domain CENP-F_leu_zip PF10473.9 gi|119872628|ref|YP_930635.1| - 0.037 14.1 10.8 0.016 15.2 7.3 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Syntaxin_2 PF14523.6 gi|119872628|ref|YP_930635.1| - 0.043 14.2 1.9 0.066 13.6 0.6 1.9 3 0 0 3 3 1 0 Syntaxin-like protein DUF948 PF06103.11 gi|119872628|ref|YP_930635.1| - 0.065 13.5 0.1 0.76 10.1 0.1 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|119872628|ref|YP_930635.1| - 0.072 13.6 1.1 0.88 10.1 0.2 2.6 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF2730 PF10805.8 gi|119872628|ref|YP_930635.1| - 0.082 13.0 8.4 1.6 8.9 0.3 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2730) Hydant_A_N PF05378.13 gi|119872628|ref|YP_930635.1| - 0.084 12.6 0.2 0.14 11.8 0.2 1.6 1 1 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region MscS_porin PF12795.7 gi|119872628|ref|YP_930635.1| - 0.089 12.3 4.8 0.086 12.4 0.9 2.4 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain V-SNARE PF05008.15 gi|119872628|ref|YP_930635.1| - 0.1 13.0 6.1 8.2 6.9 0.2 3.6 3 1 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Bcr-Abl_Oligo PF09036.10 gi|119872628|ref|YP_930635.1| - 0.11 12.5 1.7 3.9 7.6 0.3 2.6 2 2 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain Laminin_II PF06009.12 gi|119872628|ref|YP_930635.1| - 0.12 12.4 2.2 0.81 9.7 0.2 2.3 2 1 0 2 2 2 0 Laminin Domain II DUF4200 PF13863.6 gi|119872628|ref|YP_930635.1| - 0.13 12.7 9.1 2.4 8.6 5.9 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4200) DASH_Dad2 PF08654.10 gi|119872628|ref|YP_930635.1| - 0.14 12.6 2.1 0.65 10.5 0.2 2.3 1 1 1 2 2 2 0 DASH complex subunit Dad2 XhlA PF10779.9 gi|119872628|ref|YP_930635.1| - 0.18 12.0 6.7 1.6 9.0 0.0 3.6 4 0 0 4 4 4 0 Haemolysin XhlA Uso1_p115_C PF04871.13 gi|119872628|ref|YP_930635.1| - 0.18 12.2 11.3 0.1 13.0 7.0 2.5 2 1 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region SlyX PF04102.12 gi|119872628|ref|YP_930635.1| - 0.32 11.7 6.0 0.38 11.4 0.3 3.1 4 0 0 4 4 4 0 SlyX DUF1664 PF07889.12 gi|119872628|ref|YP_930635.1| - 0.32 11.0 4.8 8.5 6.4 1.6 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) MPS2 PF17060.5 gi|119872628|ref|YP_930635.1| - 0.32 10.2 8.4 0.23 10.7 6.6 1.6 1 1 1 2 2 2 0 Monopolar spindle protein 2 Tropomyosin PF00261.20 gi|119872628|ref|YP_930635.1| - 0.35 10.2 9.2 0.044 13.1 2.9 2.0 2 0 0 2 2 2 0 Tropomyosin Spectrin PF00435.21 gi|119872628|ref|YP_930635.1| - 0.51 10.8 8.4 1.7 9.2 0.2 2.9 2 1 0 2 2 2 0 Spectrin repeat DUF4795 PF16043.5 gi|119872628|ref|YP_930635.1| - 0.75 9.4 6.7 4.3 6.9 4.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) FapA PF03961.13 gi|119872628|ref|YP_930635.1| - 1.2 7.6 6.1 1.6 7.2 5.6 1.5 1 1 0 1 1 1 0 Flagellar Assembly Protein A OEP PF02321.18 gi|119872628|ref|YP_930635.1| - 1.4 8.7 7.7 0.17 11.7 1.8 2.3 2 1 1 3 3 3 0 Outer membrane efflux protein CENP-Q PF13094.6 gi|119872628|ref|YP_930635.1| - 1.7 8.9 8.3 1.4 9.1 2.1 2.1 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6_N PF17675.1 gi|119872628|ref|YP_930635.1| - 1.7 9.2 9.3 15 6.1 8.5 2.4 1 1 0 1 1 1 0 Apg6 coiled-coil region ZapB PF06005.12 gi|119872628|ref|YP_930635.1| - 1.9 9.0 16.3 1.2 9.7 5.7 3.5 3 1 1 4 4 3 0 Cell division protein ZapB YvrJ PF12841.7 gi|119872628|ref|YP_930635.1| - 1.9 8.1 4.4 79 2.9 0.1 3.5 3 1 0 3 3 3 0 YvrJ protein family PI3K_P85_iSH2 PF16454.5 gi|119872628|ref|YP_930635.1| - 2.3 7.8 9.1 13 5.4 1.2 3.1 2 1 0 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain BST2 PF16716.5 gi|119872628|ref|YP_930635.1| - 6.3 7.5 9.2 18 6.0 0.7 3.2 3 1 0 3 3 3 0 Bone marrow stromal antigen 2 DUF1690 PF07956.11 gi|119872628|ref|YP_930635.1| - 6.5 7.2 7.9 2.4 8.6 3.2 2.4 1 1 2 3 3 3 0 Protein of Unknown function (DUF1690) NfeD PF01957.18 gi|119872629|ref|YP_930636.1| - 2.7e-11 43.7 0.3 4.2e-11 43.0 0.3 1.3 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SH3_16 PF18348.1 gi|119872629|ref|YP_930636.1| - 0.028 14.2 0.1 0.059 13.2 0.0 1.6 2 0 0 2 2 2 0 Bacterial dipeptidyl-peptidase Sh3 domain CLP1_P PF16575.5 gi|119872630|ref|YP_930637.1| - 8.5e-31 107.2 0.5 8.7e-30 103.9 0.5 2.1 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|119872630|ref|YP_930637.1| - 0.0091 16.1 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|119872630|ref|YP_930637.1| - 0.027 15.0 0.0 0.046 14.2 0.0 1.3 1 0 0 1 1 1 0 ABC transporter MMR_HSR1 PF01926.23 gi|119872630|ref|YP_930637.1| - 0.031 14.3 0.0 0.084 13.0 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|119872630|ref|YP_930637.1| - 0.039 13.7 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|119872630|ref|YP_930637.1| - 0.073 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ParA PF10609.9 gi|119872630|ref|YP_930637.1| - 0.17 11.3 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|119872630|ref|YP_930637.1| - 0.19 11.4 0.1 0.28 10.8 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Fer4 PF00037.27 gi|119872632|ref|YP_930639.1| - 5.1e-07 29.2 9.0 0.0016 18.2 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119872632|ref|YP_930639.1| - 2.1e-05 24.4 12.5 0.00056 19.9 2.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872632|ref|YP_930639.1| - 2.7e-05 24.3 8.6 5.6e-05 23.2 8.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872632|ref|YP_930639.1| - 0.00019 21.3 12.4 0.018 15.1 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119872632|ref|YP_930639.1| - 0.0032 18.0 8.5 0.28 11.8 2.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872632|ref|YP_930639.1| - 0.015 15.4 12.5 0.015 15.4 12.5 2.0 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119872632|ref|YP_930639.1| - 0.26 11.4 9.3 0.62 10.2 9.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872632|ref|YP_930639.1| - 0.38 11.3 9.1 3.5 8.3 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872632|ref|YP_930639.1| - 4.9 7.9 12.4 0.68 10.6 2.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119872632|ref|YP_930639.1| - 9.3 7.5 16.6 0.86 10.7 5.3 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain CxxCxxCC PF03692.15 gi|119872633|ref|YP_930640.1| - 2.2e-06 28.2 0.8 3.3e-06 27.7 0.8 1.3 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|119872633|ref|YP_930640.1| - 0.023 14.5 1.8 0.2 11.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3109) Ribosomal_L14e PF01929.17 gi|119872634|ref|YP_930641.1| - 0.00021 21.7 0.1 0.00047 20.6 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein L14 GlcV_C_terminal PF17847.1 gi|119872634|ref|YP_930641.1| - 0.067 13.6 0.8 0.12 12.9 0.8 1.5 1 0 0 1 1 1 0 Glucose ABC transporter C-terminal domain KOW PF00467.29 gi|119872634|ref|YP_930641.1| - 0.61 10.1 10.5 0.081 12.9 6.1 1.9 2 0 0 2 2 2 0 KOW motif TruB_N PF01509.18 gi|119872635|ref|YP_930642.1| - 3.9e-24 85.7 0.3 5e-15 56.1 0.1 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|119872635|ref|YP_930642.1| - 3.8e-21 75.0 0.1 7.4e-21 74.1 0.1 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|119872635|ref|YP_930642.1| - 5.5e-20 71.1 0.0 1.3e-19 69.9 0.0 1.7 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|119872635|ref|YP_930642.1| - 3.3e-15 55.9 0.1 8.1e-15 54.6 0.1 1.7 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|119872635|ref|YP_930642.1| - 0.0063 16.7 0.0 0.036 14.3 0.0 2.3 3 0 0 3 3 3 1 UPF0113 PUA domain DUF211 PF02680.14 gi|119872636|ref|YP_930643.1| - 8e-30 102.9 7.1 8.8e-30 102.7 7.1 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 EF1_GNE PF00736.19 gi|119872636|ref|YP_930643.1| - 0.19 11.9 3.3 0.83 9.9 3.6 1.8 1 1 0 1 1 1 0 EF-1 guanine nucleotide exchange domain VIT1 PF01988.19 gi|119872637|ref|YP_930644.1| - 0.0011 18.8 3.8 0.0011 18.8 3.8 2.6 1 1 2 3 3 3 1 VIT family GFO_IDH_MocA PF01408.22 gi|119872639|ref|YP_930646.1| - 1.8e-16 61.0 0.0 2.9e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|119872639|ref|YP_930646.1| - 8.4e-05 22.6 0.1 0.0033 17.4 0.0 2.4 2 1 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain RNA_pol_inhib PF16857.5 gi|119872639|ref|YP_930646.1| - 0.29 11.0 0.2 0.29 11.0 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase inhibitor AAA_16 PF13191.6 gi|119872640|ref|YP_930647.1| - 0.00054 20.4 0.0 0.00091 19.6 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|119872640|ref|YP_930647.1| - 0.0019 18.0 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119872640|ref|YP_930647.1| - 0.0031 17.8 0.2 0.013 15.8 0.1 1.8 1 1 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|119872640|ref|YP_930647.1| - 0.023 14.3 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|119872640|ref|YP_930647.1| - 0.029 14.1 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|119872640|ref|YP_930647.1| - 0.031 14.2 0.0 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|119872640|ref|YP_930647.1| - 0.034 12.9 0.0 0.054 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119872640|ref|YP_930647.1| - 0.035 14.6 0.1 0.061 13.8 0.1 1.4 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|119872640|ref|YP_930647.1| - 0.051 13.3 0.0 0.097 12.4 0.0 1.5 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|119872640|ref|YP_930647.1| - 0.054 12.9 0.0 0.075 12.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.7 gi|119872640|ref|YP_930647.1| - 0.056 12.4 0.1 0.076 11.9 0.1 1.2 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.17 gi|119872640|ref|YP_930647.1| - 0.056 13.2 0.0 0.092 12.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|119872640|ref|YP_930647.1| - 0.057 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|119872640|ref|YP_930647.1| - 0.065 12.7 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|119872640|ref|YP_930647.1| - 0.079 13.1 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119872640|ref|YP_930647.1| - 0.082 12.9 0.1 0.18 11.8 0.1 1.5 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|119872640|ref|YP_930647.1| - 0.083 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.18 gi|119872640|ref|YP_930647.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family MobB PF03205.14 gi|119872640|ref|YP_930647.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B T2SSE PF00437.20 gi|119872640|ref|YP_930647.1| - 0.13 11.3 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.6 gi|119872640|ref|YP_930647.1| - 0.16 12.3 0.0 0.25 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|119872640|ref|YP_930647.1| - 0.16 12.4 0.0 0.22 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119872640|ref|YP_930647.1| - 0.19 12.1 0.1 0.27 11.7 0.1 1.3 1 0 0 1 1 1 0 RNA helicase CPBP PF02517.16 gi|119872641|ref|YP_930648.1| - 1.7e-14 54.0 14.5 7.7e-14 51.8 14.5 2.2 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease MoCF_biosynth PF00994.24 gi|119872643|ref|YP_930650.1| - 5.6e-37 126.6 0.0 7.2e-37 126.2 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain PNP_UDP_1 PF01048.20 gi|119872643|ref|YP_930650.1| - 0.12 11.6 0.0 0.24 10.6 0.0 1.4 1 0 0 1 1 1 0 Phosphorylase superfamily EamA PF00892.20 gi|119872644|ref|YP_930651.1| - 5e-17 62.4 42.4 5.4e-09 36.3 16.5 2.6 2 1 0 2 2 2 2 EamA-like transporter family RHH_3 PF12651.7 gi|119872645|ref|YP_930652.1| - 0.00033 20.6 0.1 0.00053 19.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.21 gi|119872645|ref|YP_930652.1| - 0.002 18.0 0.2 0.0044 16.9 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF4116 PF13475.6 gi|119872645|ref|YP_930652.1| - 0.018 14.7 0.2 0.16 11.7 0.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4116) Arc PF03869.14 gi|119872645|ref|YP_930652.1| - 0.024 14.5 0.5 0.047 13.5 0.5 1.5 1 0 0 1 1 1 0 Arc-like DNA binding domain CopG_antitoxin PF12441.8 gi|119872645|ref|YP_930652.1| - 0.026 15.1 0.2 0.036 14.6 0.2 1.2 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system RuvA_C PF07499.13 gi|119872645|ref|YP_930652.1| - 0.099 13.1 0.1 0.17 12.4 0.1 1.4 1 0 0 1 1 1 0 RuvA, C-terminal domain Herpes_teg_N PF04843.12 gi|119872646|ref|YP_930653.1| - 0.2 11.3 0.0 0.22 11.2 0.0 1.1 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region HhH-GPD PF00730.25 gi|119872647|ref|YP_930654.1| - 2.1e-22 79.6 0.0 2.6e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|119872647|ref|YP_930654.1| - 5.5e-05 23.4 6.2 9.5e-05 22.6 6.2 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|119872647|ref|YP_930654.1| - 0.00013 21.7 0.1 0.00033 20.4 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|119872647|ref|YP_930654.1| - 0.0044 17.6 0.0 0.013 16.1 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|119872647|ref|YP_930654.1| - 0.025 14.9 0.2 0.47 10.9 0.0 2.7 2 0 0 2 2 2 0 IMS family HHH motif IF2_N PF04760.15 gi|119872648|ref|YP_930655.1| - 0.047 13.5 0.8 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_19 PF12844.7 gi|119872648|ref|YP_930655.1| - 0.085 12.9 0.2 1.1 9.3 0.0 2.4 2 1 1 3 3 3 0 Helix-turn-helix domain AAA_16 PF13191.6 gi|119872649|ref|YP_930656.1| - 0.032 14.6 0.0 0.057 13.8 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|119872649|ref|YP_930656.1| - 0.13 12.3 0.0 0.34 10.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Peptidase_M32 PF02074.15 gi|119872650|ref|YP_930657.1| - 1.9e-155 518.4 0.0 2.2e-155 518.2 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Thg1 PF04446.12 gi|119872651|ref|YP_930658.1| - 2.1e-12 47.2 0.0 2.9e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase CTP_transf_like PF01467.26 gi|119872652|ref|YP_930659.1| - 2.1e-08 34.5 0.0 3.2e-08 33.9 0.0 1.4 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|119872652|ref|YP_930659.1| - 0.02 14.8 0.0 0.037 13.9 0.0 1.5 2 0 0 2 2 2 0 FAD synthetase Peptidase_M28 PF04389.17 gi|119872653|ref|YP_930660.1| - 1.8e-05 24.5 0.0 4.8e-05 23.1 0.0 1.6 1 1 1 2 2 2 1 Peptidase family M28 PA PF02225.22 gi|119872653|ref|YP_930660.1| - 0.00077 19.4 0.2 0.002 18.1 0.2 1.6 1 0 0 1 1 1 1 PA domain DUF5365 PF17326.2 gi|119872654|ref|YP_930661.1| - 0.00032 21.1 1.0 0.00038 20.9 0.9 1.2 1 1 0 1 1 1 1 Family of unknown function (DUF5365) tRNA_bind_2 PF13725.6 gi|119872654|ref|YP_930661.1| - 0.00051 19.8 1.2 0.00057 19.6 1.2 1.1 1 0 0 1 1 1 1 Possible tRNA binding domain YfdX PF10938.8 gi|119872654|ref|YP_930661.1| - 0.00085 19.3 1.1 0.0019 18.1 0.1 2.0 2 1 0 2 2 2 1 YfdX protein Rep_1 PF01446.17 gi|119872654|ref|YP_930661.1| - 0.0017 17.9 0.8 0.0019 17.8 0.8 1.2 1 0 0 1 1 1 1 Replication protein DEAD PF00270.29 gi|119872654|ref|YP_930661.1| - 0.025 14.4 0.9 0.03 14.1 0.9 1.1 1 0 0 1 1 1 0 DEAD/DEAH box helicase Exo84_C PF16528.5 gi|119872654|ref|YP_930661.1| - 0.026 14.3 4.8 0.045 13.6 1.1 2.0 2 0 0 2 2 2 0 Exocyst component 84 C-terminal ZapA PF05164.13 gi|119872654|ref|YP_930661.1| - 0.031 14.7 4.5 2.1 8.9 2.9 2.1 1 1 1 2 2 2 0 Cell division protein ZapA Occludin_ELL PF07303.13 gi|119872654|ref|YP_930661.1| - 0.045 14.5 2.3 4.3 8.1 0.2 2.2 1 1 1 2 2 2 0 Occludin homology domain H-kinase_dim PF02895.14 gi|119872654|ref|YP_930661.1| - 0.056 13.8 0.9 0.056 13.8 0.9 2.2 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain Baculo_PEP_C PF04513.12 gi|119872654|ref|YP_930661.1| - 0.081 13.0 4.2 0.44 10.6 4.2 2.2 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus PSDC PF12588.8 gi|119872654|ref|YP_930661.1| - 0.087 12.8 0.1 0.14 12.1 0.1 1.3 1 1 0 1 1 1 0 Phophatidylserine decarboxylase DUF5100 PF17029.5 gi|119872654|ref|YP_930661.1| - 0.095 12.6 2.8 8.1 6.3 0.1 2.9 1 1 1 3 3 3 0 Domain of unknown function (DUF5100) NPV_P10 PF05531.12 gi|119872654|ref|YP_930661.1| - 0.095 13.2 7.0 8.8 6.9 5.6 2.9 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Cytochrom_B562 PF07361.11 gi|119872654|ref|YP_930661.1| - 0.097 13.3 0.8 0.16 12.7 0.8 1.5 1 1 0 1 1 1 0 Cytochrome b562 Turandot PF07240.11 gi|119872654|ref|YP_930661.1| - 0.13 12.2 0.7 0.37 10.8 0.4 1.9 2 1 0 2 2 2 0 Stress-inducible humoral factor Turandot DUF2630 PF10944.8 gi|119872654|ref|YP_930661.1| - 0.19 12.2 1.9 0.25 11.8 0.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2630) Cortex-I_coil PF09304.10 gi|119872654|ref|YP_930661.1| - 0.2 11.9 6.7 0.31 11.3 2.2 2.4 1 1 0 2 2 2 0 Cortexillin I, coiled coil VAPB_antitox PF02697.14 gi|119872654|ref|YP_930661.1| - 0.35 11.7 3.9 0.78 10.5 0.5 2.5 2 1 0 2 2 2 0 Putative antitoxin DUF948 PF06103.11 gi|119872654|ref|YP_930661.1| - 0.42 10.9 5.2 13 6.2 5.2 2.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) V-SNARE PF05008.15 gi|119872654|ref|YP_930661.1| - 0.67 10.4 5.2 0.96 9.9 0.2 2.7 1 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Laminin_II PF06009.12 gi|119872654|ref|YP_930661.1| - 0.95 9.5 6.9 1.8 8.6 1.7 2.1 1 1 1 2 2 2 0 Laminin Domain II Acylphosphatase PF00708.18 gi|119872655|ref|YP_930662.1| - 2.7e-07 30.9 0.0 2.9e-07 30.8 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase Hist_deacetyl PF00850.19 gi|119872656|ref|YP_930663.1| - 0.0002 20.9 0.0 0.00068 19.2 0.0 1.8 1 1 1 2 2 2 1 Histone deacetylase domain PDT PF00800.18 gi|119872657|ref|YP_930664.1| - 5.7e-34 117.5 0.0 7.6e-34 117.1 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|119872657|ref|YP_930664.1| - 7.2e-10 38.5 0.0 3.3e-09 36.3 0.0 2.0 2 0 0 2 2 2 1 ACT domain AsnC_trans_reg2 PF17805.1 gi|119872657|ref|YP_930664.1| - 0.011 15.9 0.0 0.035 14.2 0.0 1.8 2 0 0 2 2 2 0 AsnC-like ligand binding domain Thiamine_BP PF01910.17 gi|119872657|ref|YP_930664.1| - 0.17 11.8 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 Thiamine-binding protein DEAD PF00270.29 gi|119872658|ref|YP_930665.1| - 8.1e-22 77.8 0.0 1e-20 74.2 0.0 2.6 3 0 0 3 3 3 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|119872658|ref|YP_930665.1| - 1.8e-14 54.0 0.8 4.8e-14 52.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|119872658|ref|YP_930665.1| - 7.2e-10 39.2 0.0 1.3e-08 35.1 0.0 2.8 3 1 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119872658|ref|YP_930665.1| - 3.1e-05 24.1 0.0 5.3e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|119872658|ref|YP_930665.1| - 6.7e-05 22.9 0.0 0.00028 20.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|119872658|ref|YP_930665.1| - 0.0001 22.0 0.5 0.087 12.7 0.1 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|119872658|ref|YP_930665.1| - 0.00041 20.1 0.0 0.001 18.9 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|119872658|ref|YP_930665.1| - 0.0057 16.9 0.2 0.075 13.3 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNF2_N PF00176.23 gi|119872658|ref|YP_930665.1| - 0.023 13.4 0.0 0.036 12.8 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain IMS_HHH PF11798.8 gi|119872658|ref|YP_930665.1| - 0.085 13.2 0.0 15 6.1 0.0 2.9 2 0 0 2 2 2 0 IMS family HHH motif HemN_C PF06969.16 gi|119872658|ref|YP_930665.1| - 0.088 12.9 0.0 0.25 11.4 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain RNA_pol_A_CTD PF03118.15 gi|119872658|ref|YP_930665.1| - 0.12 12.2 0.0 0.45 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain MCM PF00493.23 gi|119872659|ref|YP_930666.1| - 5.7e-100 333.0 0.0 7.8e-100 332.6 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|119872659|ref|YP_930666.1| - 7.8e-39 132.4 0.0 1.5e-38 131.4 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|119872659|ref|YP_930666.1| - 8e-27 93.5 1.4 1.9e-26 92.3 1.4 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|119872659|ref|YP_930666.1| - 1.6e-10 40.8 0.1 7.1e-07 28.8 0.0 2.3 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|119872659|ref|YP_930666.1| - 3.6e-09 37.2 1.3 1.6e-08 35.1 0.2 2.4 3 0 0 3 3 3 1 MCM N-terminal domain AAA_3 PF07726.11 gi|119872659|ref|YP_930666.1| - 3.8e-07 30.0 0.1 1.8e-06 27.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|119872659|ref|YP_930666.1| - 1.4e-06 28.3 0.0 3.4e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.10 gi|119872659|ref|YP_930666.1| - 5.2e-06 26.5 1.4 1.1e-05 25.5 1.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain AAA PF00004.29 gi|119872659|ref|YP_930666.1| - 0.0029 18.0 1.0 0.011 16.2 0.0 2.6 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|119872659|ref|YP_930666.1| - 0.003 17.3 0.1 0.014 15.1 0.1 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|119872659|ref|YP_930666.1| - 0.007 16.8 0.1 0.032 14.6 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain HypA PF01155.19 gi|119872659|ref|YP_930666.1| - 0.017 15.1 0.1 0.038 14.0 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_30 PF13604.6 gi|119872659|ref|YP_930666.1| - 0.024 14.4 1.1 0.057 13.1 1.1 1.6 1 0 0 1 1 1 0 AAA domain Zn_ribbon_SprT PF17283.2 gi|119872659|ref|YP_930666.1| - 0.085 12.8 1.3 0.27 11.2 1.3 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119872659|ref|YP_930666.1| - 0.16 11.9 0.7 14 5.8 0.1 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119872659|ref|YP_930666.1| - 0.65 9.8 4.6 8.9 6.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|119872659|ref|YP_930666.1| - 1.2 8.9 5.4 4.3 7.1 1.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain OrfB_Zn_ribbon PF07282.11 gi|119872660|ref|YP_930667.1| - 4.2e-09 36.2 0.0 9.6e-09 35.1 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain CEP63 PF17045.5 gi|119872660|ref|YP_930667.1| - 0.0063 16.5 1.0 0.0085 16.0 1.0 1.1 1 0 0 1 1 1 1 Centrosomal protein of 63 kDa RseA_C PF03873.13 gi|119872660|ref|YP_930667.1| - 0.036 14.3 0.2 0.061 13.6 0.2 1.3 1 0 0 1 1 1 0 Anti sigma-E protein RseA, C-terminal domain RPA_interact_C PF14768.6 gi|119872660|ref|YP_930667.1| - 0.047 14.3 1.0 0.089 13.4 1.0 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal DNA_ligase_ZBD PF03119.16 gi|119872660|ref|YP_930667.1| - 0.099 12.7 0.9 0.29 11.2 0.9 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain YhfH PF14149.6 gi|119872660|ref|YP_930667.1| - 0.1 12.6 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 YhfH-like protein Class_IIIsignal PF04021.12 gi|119872661|ref|YP_930668.1| - 0.0052 16.7 6.6 0.01 15.8 6.6 1.6 1 0 0 1 1 1 1 Class III signal peptide RSN1_TM PF13967.6 gi|119872662|ref|YP_930669.1| - 0.023 14.5 0.1 0.029 14.1 0.1 1.2 1 0 0 1 1 1 0 Late exocytosis, associated with Golgi transport FAD_binding_6 PF00970.24 gi|119872662|ref|YP_930669.1| - 0.057 13.8 0.0 0.081 13.3 0.0 1.2 1 0 0 1 1 1 0 Oxidoreductase FAD-binding domain HemY_N PF07219.13 gi|119872662|ref|YP_930669.1| - 0.14 12.3 3.0 0.23 11.7 3.0 1.3 1 0 0 1 1 1 0 HemY protein N-terminus DUF4006 PF13179.6 gi|119872662|ref|YP_930669.1| - 0.2 11.6 0.9 0.3 11.0 0.9 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF4006) PQQ_3 PF13570.6 gi|119872663|ref|YP_930670.1| - 0.031 14.8 36.0 0.36 11.4 1.9 8.5 8 1 1 9 9 9 0 PQQ-like domain Mcl1_mid PF12341.8 gi|119872663|ref|YP_930670.1| - 0.16 11.3 0.1 0.45 9.8 0.0 1.7 2 0 0 2 2 2 0 Minichromosome loss protein, Mcl1, middle region bPH_6 PF10756.9 gi|119872663|ref|YP_930670.1| - 0.28 11.3 5.7 0.29 11.3 1.9 2.8 2 0 0 2 2 2 0 Bacterial PH domain Arena_RNA_pol PF06317.11 gi|119872664|ref|YP_930671.1| - 0.39 7.8 0.0 0.5 7.5 0.0 1.0 1 0 0 1 1 1 0 Arenavirus RNA polymerase Methyltransf_11 PF08241.12 gi|119872670|ref|YP_930677.1| - 1.2e-10 41.9 0.0 3.1e-10 40.6 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872670|ref|YP_930677.1| - 8.1e-09 36.1 0.0 2e-07 31.6 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872670|ref|YP_930677.1| - 0.00097 19.0 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872670|ref|YP_930677.1| - 0.07 13.9 0.0 1.1 10.1 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain Radical_SAM_C PF16199.5 gi|119872671|ref|YP_930678.1| - 3e-24 84.8 0.0 5.3e-24 84.1 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|119872671|ref|YP_930678.1| - 4.6e-19 69.4 0.0 1.3e-18 68.0 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_10 PF13673.7 gi|119872671|ref|YP_930678.1| - 1.1e-05 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|119872671|ref|YP_930678.1| - 0.0014 18.8 0.1 0.003 17.8 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Aminotran_1_2 PF00155.21 gi|119872672|ref|YP_930679.1| - 2.2e-26 92.9 0.0 2.6e-26 92.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II UPF0051 PF01458.17 gi|119872673|ref|YP_930680.1| - 1.4e-20 73.9 0.1 2.1e-20 73.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF1743 PF08489.11 gi|119872674|ref|YP_930681.1| - 6.9e-27 93.8 0.0 1.2e-26 93.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|119872674|ref|YP_930681.1| - 0.007 16.2 0.2 0.016 15.1 0.2 1.5 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.7 gi|119872674|ref|YP_930681.1| - 0.022 14.7 1.5 0.05 13.6 1.5 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-MYND PF01753.18 gi|119872674|ref|YP_930681.1| - 0.22 11.6 1.5 5.7 7.1 0.7 2.3 2 0 0 2 2 2 0 MYND finger zf_Rg PF17915.1 gi|119872674|ref|YP_930681.1| - 2.6 7.5 4.7 5.2 6.5 4.7 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger DUF35_N PF12172.8 gi|119872674|ref|YP_930681.1| - 7.3 6.6 7.6 8.6 6.4 0.9 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Peripla_BP_2 PF01497.18 gi|119872675|ref|YP_930682.1| - 7.8e-05 22.4 0.0 0.00011 21.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Phage_tail_X PF05489.12 gi|119872675|ref|YP_930682.1| - 0.058 13.1 0.2 8.5 6.1 0.1 2.4 2 0 0 2 2 2 0 Phage Tail Protein X ErmC PF06308.11 gi|119872675|ref|YP_930682.1| - 0.094 13.1 0.2 0.21 12.0 0.2 1.5 1 0 0 1 1 1 0 23S rRNA methylastransferase leader peptide (ErmCL) UBA_6 PF18039.1 gi|119872676|ref|YP_930683.1| - 0.037 13.9 0.1 0.066 13.2 0.1 1.4 1 0 0 1 1 1 0 UBA-like domain ABC_membrane_3 PF13748.6 gi|119872676|ref|YP_930683.1| - 0.076 12.2 3.5 0.098 11.9 3.5 1.4 1 1 0 1 1 1 0 ABC transporter transmembrane region FUN14 PF04930.15 gi|119872676|ref|YP_930683.1| - 0.45 11.0 6.0 3.5 8.1 6.0 2.0 1 1 0 1 1 1 0 FUN14 family PrgI PF12666.7 gi|119872676|ref|YP_930683.1| - 0.88 10.3 5.9 0.64 10.8 4.7 1.4 1 1 0 1 1 1 0 PrgI family protein ATPase_gene1 PF09527.10 gi|119872676|ref|YP_930683.1| - 1.1 9.5 9.0 19 5.5 0.1 2.7 2 1 0 2 2 2 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter CxxCxxCC PF03692.15 gi|119872677|ref|YP_930684.1| - 7.3e-08 33.0 0.0 1.6e-07 31.9 0.0 1.6 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain TPP_enzyme_C PF02775.21 gi|119872678|ref|YP_930685.1| - 4.6e-29 101.2 0.0 8.2e-29 100.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|119872678|ref|YP_930685.1| - 9.2e-22 77.0 0.4 1.5e-21 76.3 0.4 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|119872679|ref|YP_930686.1| - 1.6e-49 168.8 0.1 2.4e-49 168.2 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|119872679|ref|YP_930686.1| - 1.3e-34 119.8 0.0 2.8e-34 118.7 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|119872679|ref|YP_930686.1| - 6e-06 26.5 0.1 6.1e-05 23.3 0.0 2.7 3 0 0 3 3 3 1 Pyruvate:ferredoxin oxidoreductase core domain II OxoGdeHyase_C PF16870.5 gi|119872679|ref|YP_930686.1| - 0.0047 16.6 0.0 1.7 8.3 0.0 2.6 2 0 0 2 2 2 2 2-oxoglutarate dehydrogenase C-terminal TPP_enzyme_N PF02776.18 gi|119872679|ref|YP_930686.1| - 0.024 14.3 0.3 0.067 12.8 0.2 1.7 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain OrfB_Zn_ribbon PF07282.11 gi|119872683|ref|YP_930690.1| - 1.8e-10 40.6 0.0 3.6e-10 39.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872683|ref|YP_930690.1| - 0.00042 19.9 1.8 0.00079 19.0 1.8 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|119872683|ref|YP_930690.1| - 0.003 17.5 0.7 0.0049 16.8 0.7 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 OrfB_IS605 PF01385.19 gi|119872683|ref|YP_930690.1| - 0.0066 16.7 0.7 0.014 15.6 0.7 1.5 1 0 0 1 1 1 1 Probable transposase zinc_ribbon_2 PF13240.6 gi|119872683|ref|YP_930690.1| - 0.022 14.4 0.7 0.043 13.6 0.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain C1_1 PF00130.22 gi|119872683|ref|YP_930690.1| - 0.036 14.0 0.3 0.066 13.1 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_RNApol_7kD PF03604.13 gi|119872683|ref|YP_930690.1| - 0.043 13.5 2.9 0.088 12.5 2.9 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|119872683|ref|YP_930690.1| - 0.082 12.9 0.5 0.14 12.2 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|119872683|ref|YP_930690.1| - 0.086 12.9 1.8 0.32 11.0 1.8 1.9 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|119872683|ref|YP_930690.1| - 0.089 13.0 1.1 0.17 12.1 1.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e DUF2387 PF09526.10 gi|119872683|ref|YP_930690.1| - 0.11 12.6 0.8 0.26 11.5 0.3 1.9 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) BLOC1_2 PF10046.9 gi|119872683|ref|YP_930690.1| - 0.13 12.6 0.2 1.7 9.0 0.1 2.3 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cys_rich_CPCC PF14206.6 gi|119872683|ref|YP_930690.1| - 0.18 11.7 0.3 0.33 10.8 0.3 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC NRDD PF13597.6 gi|119872683|ref|YP_930690.1| - 0.23 10.2 0.0 0.36 9.6 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Auto_anti-p27 PF06677.12 gi|119872683|ref|YP_930690.1| - 0.43 10.8 1.7 0.8 9.9 1.7 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|119872683|ref|YP_930690.1| - 0.61 9.6 2.1 2.1 8.0 2.2 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding MarC PF01914.17 gi|119872684|ref|YP_930691.1| - 6.9e-28 97.4 20.1 9.5e-28 97.0 20.1 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein FBPase_3 PF01950.16 gi|119872685|ref|YP_930692.1| - 1.1e-176 587.4 0.0 1.3e-176 587.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Acetyltransf_1 PF00583.25 gi|119872686|ref|YP_930693.1| - 2.4e-09 37.4 0.0 2.8e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|119872686|ref|YP_930693.1| - 2.7e-08 34.6 0.0 3.2e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119872686|ref|YP_930693.1| - 6.5e-05 22.8 0.0 0.0001 22.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|119872686|ref|YP_930693.1| - 0.00086 19.7 0.1 0.002 18.5 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119872686|ref|YP_930693.1| - 0.0034 17.3 0.0 0.0042 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GATase PF00117.28 gi|119872687|ref|YP_930694.1| - 3.8e-43 147.5 0.0 4.9e-43 147.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I CPSase_sm_chain PF00988.22 gi|119872687|ref|YP_930694.1| - 2e-40 137.6 0.0 3e-40 137.0 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain Peptidase_C26 PF07722.13 gi|119872687|ref|YP_930694.1| - 7.8e-11 42.1 0.0 9.9e-09 35.3 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|119872688|ref|YP_930695.1| - 1.1e-96 322.3 0.0 3.5e-64 216.2 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|119872688|ref|YP_930695.1| - 1.5e-24 86.6 0.0 3.3e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|119872688|ref|YP_930695.1| - 3.3e-18 65.9 0.1 2.7e-08 33.6 0.1 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119872688|ref|YP_930695.1| - 2.6e-12 47.1 0.0 1.7e-06 28.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|119872688|ref|YP_930695.1| - 3.5e-12 46.3 0.0 4e-05 23.2 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_5 PF13549.6 gi|119872688|ref|YP_930695.1| - 7.8e-12 45.1 0.0 2.4e-05 23.9 0.0 3.1 2 1 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|119872688|ref|YP_930695.1| - 1.9e-11 43.8 0.0 5.7e-05 22.9 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon GARS_A PF01071.19 gi|119872688|ref|YP_930695.1| - 3.1e-09 36.9 0.0 4.7e-05 23.2 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|119872688|ref|YP_930695.1| - 7e-06 25.8 0.0 0.049 13.2 0.0 2.8 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|119872688|ref|YP_930695.1| - 0.00012 21.8 0.0 0.11 12.0 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp domain HTH_23 PF13384.6 gi|119872688|ref|YP_930695.1| - 0.11 12.3 2.0 0.88 9.4 0.1 3.3 4 1 0 4 4 4 0 Homeodomain-like domain Ubiq-assoc PF09145.10 gi|119872688|ref|YP_930695.1| - 0.12 12.4 0.4 4.9 7.2 0.0 2.9 2 0 0 2 2 2 0 Ubiquitin-associated Nitro_FeMo-Co PF02579.17 gi|119872688|ref|YP_930695.1| - 0.15 12.4 0.1 5.4 7.4 0.1 3.2 3 0 0 3 3 3 0 Dinitrogenase iron-molybdenum cofactor RimK PF08443.11 gi|119872689|ref|YP_930696.1| - 4.6e-37 127.4 0.0 2.2e-36 125.2 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|119872689|ref|YP_930696.1| - 9e-11 41.5 0.0 1.5e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119872689|ref|YP_930696.1| - 3.4e-08 33.7 0.0 6.4e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|119872689|ref|YP_930696.1| - 0.049 13.2 0.0 0.15 11.6 0.0 1.9 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus AIRS_C PF02769.22 gi|119872690|ref|YP_930697.1| - 1.4e-24 87.0 0.6 2.1e-24 86.4 0.2 1.4 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|119872690|ref|YP_930697.1| - 6e-13 49.3 0.6 2.8e-12 47.1 0.2 2.3 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF99 PF01949.16 gi|119872691|ref|YP_930698.1| - 1.1e-51 174.8 0.0 1.3e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 SBP_bac_8 PF13416.6 gi|119872692|ref|YP_930699.1| - 4.3e-27 95.6 0.1 5.1e-27 95.4 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|119872692|ref|YP_930699.1| - 2.5e-15 56.6 0.3 3.8e-15 56.0 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119872692|ref|YP_930699.1| - 3.4e-14 53.5 2.0 4.8e-14 53.0 2.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119872692|ref|YP_930699.1| - 1.3e-11 44.7 0.0 2.2e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein MoCF_biosynth PF00994.24 gi|119872693|ref|YP_930700.1| - 2.6e-31 108.2 0.1 3.1e-31 108.0 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain LDcluster4 PF18306.1 gi|119872694|ref|YP_930701.1| - 1.1e-17 64.1 0.0 1.3e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|119872694|ref|YP_930701.1| - 0.0006 19.1 0.0 0.16 11.2 0.0 2.1 2 0 0 2 2 2 2 SLOG in TRPM, prokaryote Lysine_decarbox PF03641.14 gi|119872694|ref|YP_930701.1| - 0.00065 19.8 0.2 0.002 18.2 0.2 1.7 1 1 1 2 2 2 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.15 gi|119872694|ref|YP_930701.1| - 0.0032 17.5 0.0 0.0041 17.1 0.0 1.2 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase CPBP PF02517.16 gi|119872695|ref|YP_930702.1| - 3.1e-15 56.3 4.3 3.1e-15 56.3 4.3 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF2070 PF09843.9 gi|119872695|ref|YP_930702.1| - 6.8 4.9 12.9 13 4.0 12.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Sld5 PF05916.11 gi|119872696|ref|YP_930703.1| - 6.1e-12 46.0 0.1 7.3e-12 45.7 0.1 1.1 1 0 0 1 1 1 1 GINS complex protein Thymidylate_kin PF02223.17 gi|119872697|ref|YP_930704.1| - 8.9e-47 159.2 0.0 1.1e-46 158.9 0.0 1.1 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|119872697|ref|YP_930704.1| - 2.5e-08 34.5 0.0 6e-08 33.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|119872697|ref|YP_930704.1| - 4.2e-07 30.0 0.6 0.00037 20.4 0.6 2.8 1 1 0 1 1 1 1 Deoxynucleoside kinase Ploopntkinase1 PF18748.1 gi|119872697|ref|YP_930704.1| - 1.2e-05 25.0 0.0 0.033 13.7 0.0 2.1 2 0 0 2 2 2 2 P-loop Nucleotide Kinase1 AAA_28 PF13521.6 gi|119872697|ref|YP_930704.1| - 2e-05 24.9 0.0 2.7e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119872697|ref|YP_930704.1| - 0.00064 19.9 0.0 0.15 12.2 0.0 2.3 2 0 0 2 2 2 2 AAA domain Cytidylate_kin PF02224.18 gi|119872697|ref|YP_930704.1| - 0.016 14.9 0.1 0.18 11.5 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase AAA_17 PF13207.6 gi|119872697|ref|YP_930704.1| - 0.02 15.3 0.0 0.08 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|119872697|ref|YP_930704.1| - 0.14 12.3 0.0 6.4 6.9 0.0 2.3 2 1 0 2 2 2 0 Shikimate kinase AAA_22 PF13401.6 gi|119872697|ref|YP_930704.1| - 0.18 12.1 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|119872697|ref|YP_930704.1| - 0.22 11.2 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Pyr_redox_2 PF07992.14 gi|119872698|ref|YP_930705.1| - 1.4e-14 54.1 0.3 2.8e-07 30.1 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119872698|ref|YP_930705.1| - 9.5e-11 41.9 4.4 2.4e-05 24.1 1.3 2.9 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|119872698|ref|YP_930705.1| - 1.2e-10 41.0 1.0 0.00035 19.8 0.7 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|119872698|ref|YP_930705.1| - 1.4e-10 40.5 2.1 6.9e-06 25.0 0.6 2.6 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|119872698|ref|YP_930705.1| - 5.3e-10 39.0 0.7 0.0028 17.0 0.3 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|119872698|ref|YP_930705.1| - 2.1e-06 27.2 0.1 4.1e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|119872698|ref|YP_930705.1| - 2.1e-06 27.2 0.3 3.4e-06 26.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|119872698|ref|YP_930705.1| - 2.7e-06 26.8 2.4 2.7e-06 26.8 2.4 2.6 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|119872698|ref|YP_930705.1| - 0.00011 22.4 1.0 0.00041 20.5 1.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|119872698|ref|YP_930705.1| - 0.00024 21.6 1.6 0.38 11.3 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|119872698|ref|YP_930705.1| - 0.00031 19.9 0.5 0.00052 19.2 0.5 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_oxidored PF12831.7 gi|119872698|ref|YP_930705.1| - 0.0017 17.8 3.6 0.027 13.8 3.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|119872698|ref|YP_930705.1| - 0.0056 16.7 0.5 0.38 10.7 0.1 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|119872698|ref|YP_930705.1| - 0.013 14.9 1.4 8.4 5.5 0.0 3.1 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|119872698|ref|YP_930705.1| - 0.086 11.7 1.4 0.13 11.1 1.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase EVE PF01878.18 gi|119872698|ref|YP_930705.1| - 0.15 12.0 0.0 15 5.6 0.0 2.3 1 1 1 2 2 2 0 EVE domain ThiF PF00899.21 gi|119872698|ref|YP_930705.1| - 0.19 11.1 0.2 0.31 10.3 0.2 1.3 1 0 0 1 1 1 0 ThiF family Adenylsucc_synt PF00709.21 gi|119872699|ref|YP_930706.1| - 1.2e-68 232.0 0.2 1.6e-36 126.2 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Lyase_1 PF00206.20 gi|119872700|ref|YP_930707.1| - 7.7e-34 117.5 0.0 1.5e-33 116.6 0.0 1.4 2 0 0 2 2 2 1 Lyase ASL_C PF08328.11 gi|119872700|ref|YP_930707.1| - 0.00018 21.6 0.1 0.00061 19.9 0.0 1.9 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal ADSL_C PF10397.9 gi|119872700|ref|YP_930707.1| - 0.03 14.9 0.1 1.6 9.3 0.0 3.0 3 0 0 3 3 3 0 Adenylosuccinate lyase C-terminus GATase PF00117.28 gi|119872701|ref|YP_930708.1| - 1e-15 58.0 0.0 1.2e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|119872701|ref|YP_930708.1| - 2e-06 27.8 0.0 5.1e-06 26.4 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|119872701|ref|YP_930708.1| - 0.013 15.3 0.5 0.72 9.6 0.1 2.7 2 1 0 3 3 3 0 Peptidase C26 GATase_3 PF07685.14 gi|119872701|ref|YP_930708.1| - 0.015 14.9 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Rib_5-P_isom_A PF06026.14 gi|119872703|ref|YP_930710.1| - 9.6e-52 175.1 0.0 1.1e-51 174.8 0.0 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|119872703|ref|YP_930710.1| - 6.7e-06 26.1 0.0 1.4e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|119872703|ref|YP_930710.1| - 0.038 13.1 0.0 0.13 11.4 0.0 1.7 2 0 0 2 2 2 0 Putative sugar-binding domain CoA_trans PF01144.23 gi|119872703|ref|YP_930710.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Coenzyme A transferase AIRS PF00586.24 gi|119872705|ref|YP_930712.1| - 1.6e-10 41.5 0.0 2.4e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain UPF0047 PF01894.17 gi|119872707|ref|YP_930714.1| - 3.1e-35 120.8 0.0 4.3e-35 120.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 DUF92 PF01940.16 gi|119872708|ref|YP_930715.1| - 9.6e-53 179.0 11.8 1.1e-52 178.8 11.8 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 YwcE PF17368.2 gi|119872708|ref|YP_930715.1| - 0.51 11.0 5.0 0.35 11.5 2.8 1.9 2 0 0 2 2 2 0 Spore morphogenesis and germination YwcE polyprenyl_synt PF00348.17 gi|119872709|ref|YP_930716.1| - 1.7e-54 184.6 0.0 2.2e-54 184.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase LPD7 PF18821.1 gi|119872709|ref|YP_930716.1| - 0.014 15.5 0.1 0.065 13.4 0.1 2.2 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 7 AA_kinase PF00696.28 gi|119872710|ref|YP_930717.1| - 1.2e-33 116.7 0.0 1.3e-33 116.5 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family PMP1_2 PF08114.11 gi|119872712|ref|YP_930719.1| - 3.7 7.4 7.2 1.3 8.9 0.2 2.7 2 1 0 2 2 2 0 ATPase proteolipid family DUF4118 PF13493.6 gi|119872712|ref|YP_930719.1| - 5 7.0 11.5 1 9.2 3.7 2.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4118) zf-ZPR1 PF03367.13 gi|119872713|ref|YP_930720.1| - 2.8e-26 92.3 0.0 3.2e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zinc_ribbon_2 PF13240.6 gi|119872713|ref|YP_930720.1| - 0.011 15.4 3.6 2 8.3 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872713|ref|YP_930720.1| - 0.017 14.5 3.0 0.91 9.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|119872713|ref|YP_930720.1| - 0.026 14.5 0.0 0.055 13.5 0.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|119872713|ref|YP_930720.1| - 0.029 14.4 0.0 0.089 12.8 0.0 1.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|119872713|ref|YP_930720.1| - 0.055 13.0 1.3 1.1 8.8 0.1 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.12 gi|119872713|ref|YP_930720.1| - 0.07 13.3 0.1 9.3 6.5 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2072 PF09845.9 gi|119872713|ref|YP_930720.1| - 0.084 13.1 0.4 0.58 10.4 0.1 2.0 2 0 0 2 2 2 0 Zn-ribbon containing protein zf-NADH-PPase PF09297.11 gi|119872713|ref|YP_930720.1| - 0.33 10.7 4.7 3.9 7.2 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PRA-CH PF01502.18 gi|119872714|ref|YP_930721.1| - 6.9e-31 105.9 0.0 9.7e-31 105.4 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Glucodextran_N PF09137.11 gi|119872714|ref|YP_930721.1| - 0.14 11.7 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Glucodextranase, domain N Aminotran_1_2 PF00155.21 gi|119872715|ref|YP_930722.1| - 2.9e-29 102.4 0.0 3.7e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|119872715|ref|YP_930722.1| - 0.00033 19.7 0.0 0.00048 19.1 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|119872715|ref|YP_930722.1| - 0.15 10.5 0.0 0.2 10.2 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HisG PF01634.18 gi|119872716|ref|YP_930723.1| - 5.1e-46 156.6 0.0 6.7e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|119872716|ref|YP_930723.1| - 1.8e-21 76.1 0.2 3.7e-21 75.0 0.2 1.6 1 0 0 1 1 1 1 HisG, C-terminal domain PRA-PH PF01503.17 gi|119872717|ref|YP_930724.1| - 9.3e-18 64.5 0.2 1e-17 64.3 0.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|119872717|ref|YP_930724.1| - 8e-06 26.0 0.6 1.1e-05 25.6 0.2 1.5 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|119872717|ref|YP_930724.1| - 0.086 13.1 0.2 0.43 10.9 0.1 1.9 2 0 0 2 2 2 0 MazG-like family Histidinol_dh PF00815.20 gi|119872718|ref|YP_930725.1| - 5.4e-71 239.7 0.0 7.7e-71 239.2 0.0 1.2 1 0 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.21 gi|119872719|ref|YP_930726.1| - 7.7e-85 284.0 2.3 8.8e-85 283.8 2.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|119872719|ref|YP_930726.1| - 9.9e-11 41.3 0.0 8.5e-07 28.4 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|119872719|ref|YP_930726.1| - 1.7e-10 40.6 3.2 7.9e-05 22.1 0.9 2.2 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|119872719|ref|YP_930726.1| - 1.5e-09 37.7 4.0 0.00012 21.6 0.2 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.21 gi|119872719|ref|YP_930726.1| - 2e-08 33.8 0.1 0.00099 18.4 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|119872719|ref|YP_930726.1| - 1.7e-07 30.6 1.7 0.00067 18.7 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.17 gi|119872719|ref|YP_930726.1| - 1.9e-07 30.6 0.7 0.0069 15.7 0.2 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|119872719|ref|YP_930726.1| - 3.1e-06 26.7 0.2 0.024 14.1 0.0 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|119872719|ref|YP_930726.1| - 0.00019 20.7 0.0 0.13 11.4 0.0 2.3 2 1 0 2 2 2 2 Indole-3-glycerol phosphate synthase DUF561 PF04481.12 gi|119872719|ref|YP_930726.1| - 0.00036 19.8 0.2 0.27 10.4 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) FMN_dh PF01070.18 gi|119872719|ref|YP_930726.1| - 0.0023 17.0 7.0 0.058 12.4 0.4 2.7 2 1 1 3 3 3 2 FMN-dependent dehydrogenase BtpA PF03437.15 gi|119872719|ref|YP_930726.1| - 0.011 15.2 0.8 0.93 8.9 0.2 2.3 2 0 0 2 2 2 0 BtpA family Trp_syntA PF00290.20 gi|119872719|ref|YP_930726.1| - 0.017 14.0 0.9 0.1 11.4 0.2 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IGPD PF00475.18 gi|119872720|ref|YP_930727.1| - 2.3e-40 138.2 0.0 2.8e-40 137.9 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|119872721|ref|YP_930728.1| - 4.7e-52 176.7 0.1 5.2e-52 176.6 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|119872721|ref|YP_930728.1| - 0.038 13.4 0.5 0.61 9.5 0.2 2.0 1 1 1 2 2 2 0 PcrB family FMN_dh PF01070.18 gi|119872721|ref|YP_930728.1| - 0.081 11.9 0.4 0.12 11.3 0.4 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RtcB PF01139.17 gi|119872722|ref|YP_930729.1| - 9e-162 538.9 0.0 1e-161 538.8 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB Asparaginase PF00710.20 gi|119872723|ref|YP_930730.1| - 7.1e-55 185.5 0.3 1.1e-54 184.9 0.3 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|119872723|ref|YP_930730.1| - 3.9e-25 88.3 0.2 1.5e-24 86.4 0.0 2.0 2 1 1 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|119872723|ref|YP_930730.1| - 2.3e-15 55.6 0.1 5.3e-15 54.5 0.1 1.6 1 0 0 1 1 1 1 GatD N-terminal domain HD_2 PF12917.7 gi|119872724|ref|YP_930731.1| - 9.5e-09 35.3 0.5 1.2e-07 31.7 0.5 2.0 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 gi|119872724|ref|YP_930731.1| - 3.5e-07 30.3 0.0 5.7e-07 29.6 0.0 1.5 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|119872724|ref|YP_930731.1| - 2e-05 24.8 0.3 3.9e-05 23.8 0.3 1.6 1 1 0 1 1 1 1 HD domain CBS PF00571.28 gi|119872726|ref|YP_930733.1| - 9e-27 93.3 3.5 2e-12 47.4 0.1 2.1 2 0 0 2 2 2 2 CBS domain Porphobil_deam PF01379.20 gi|119872726|ref|YP_930733.1| - 0.06 12.8 0.1 0.077 12.5 0.1 1.1 1 0 0 1 1 1 0 Porphobilinogen deaminase, dipyromethane cofactor binding domain IF3_N PF05198.16 gi|119872726|ref|YP_930733.1| - 0.13 12.6 0.6 18 5.7 0.1 2.2 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain AFOR_N PF02730.15 gi|119872727|ref|YP_930734.1| - 8.2e-36 123.7 0.2 1.6e-35 122.8 0.2 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|119872727|ref|YP_930734.1| - 7.3e-15 54.9 0.0 2.2e-14 53.3 0.0 1.8 2 1 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 OrfB_Zn_ribbon PF07282.11 gi|119872728|ref|YP_930735.1| - 3.2e-10 39.8 0.0 6.9e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872728|ref|YP_930735.1| - 0.00044 19.8 4.9 0.0011 18.6 4.9 1.7 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|119872728|ref|YP_930735.1| - 0.00066 19.3 1.9 0.0015 18.2 1.9 1.5 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|119872728|ref|YP_930735.1| - 0.0034 18.0 3.2 1.1 10.0 0.2 2.8 1 1 1 2 2 2 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DZR PF12773.7 gi|119872728|ref|YP_930735.1| - 0.016 15.2 0.1 0.029 14.4 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|119872728|ref|YP_930735.1| - 0.028 14.1 1.5 0.028 14.1 1.5 1.8 2 0 0 2 2 1 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|119872728|ref|YP_930735.1| - 0.036 14.1 2.0 1.5 8.9 0.2 2.5 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger FliH PF02108.16 gi|119872728|ref|YP_930735.1| - 0.044 13.9 0.2 0.17 11.9 0.3 2.0 2 1 0 2 2 1 0 Flagellar assembly protein FliH HypA PF01155.19 gi|119872728|ref|YP_930735.1| - 0.046 13.7 0.2 0.17 11.9 0.1 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|119872728|ref|YP_930735.1| - 0.086 12.9 0.6 3.2 7.8 0.6 2.6 1 1 0 1 1 1 0 CpXC protein zf-ribbon_3 PF13248.6 gi|119872728|ref|YP_930735.1| - 0.088 12.2 1.6 5.2 6.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain C1_1 PF00130.22 gi|119872728|ref|YP_930735.1| - 0.13 12.2 0.2 0.25 11.3 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) NRDD PF13597.6 gi|119872728|ref|YP_930735.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc_ribbon_4 PF13717.6 gi|119872728|ref|YP_930735.1| - 0.16 12.0 1.7 0.58 10.1 1.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|119872728|ref|YP_930735.1| - 0.17 11.4 2.1 0.62 9.6 2.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|119872728|ref|YP_930735.1| - 0.21 11.6 0.3 0.43 10.5 0.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.19 gi|119872728|ref|YP_930735.1| - 1.2 8.9 4.0 12 5.7 4.2 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger UPF0547 PF10571.9 gi|119872728|ref|YP_930735.1| - 2.3 8.4 4.5 9.9 6.3 4.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|119872728|ref|YP_930735.1| - 9.3 6.3 6.9 25 4.9 0.6 2.5 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nitro_FeMo-Co PF02579.17 gi|119872730|ref|YP_930737.1| - 2.6e-13 50.1 0.0 3.5e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor CTP_transf_like PF01467.26 gi|119872730|ref|YP_930737.1| - 0.17 12.1 0.0 0.25 11.5 0.0 1.4 1 1 0 1 1 1 0 Cytidylyltransferase-like POR PF01558.18 gi|119872731|ref|YP_930738.1| - 1e-36 126.7 0.0 4.4e-36 124.6 0.0 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|119872732|ref|YP_930739.1| - 1.2e-14 53.4 14.8 2.5e-08 33.4 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872732|ref|YP_930739.1| - 4.7e-10 39.5 6.5 8.5e-10 38.6 6.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119872732|ref|YP_930739.1| - 3.9e-09 36.5 16.3 8.8e-08 32.2 8.0 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119872732|ref|YP_930739.1| - 5.4e-09 36.5 17.5 6e-08 33.2 9.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872732|ref|YP_930739.1| - 8.5e-09 35.4 20.8 5.3e-07 29.7 10.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119872732|ref|YP_930739.1| - 8.5e-09 35.1 11.9 2.3e-05 24.2 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119872732|ref|YP_930739.1| - 1.4e-08 35.5 8.3 0.00082 20.3 3.6 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119872732|ref|YP_930739.1| - 6.4e-08 32.2 11.1 0.00032 20.6 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119872732|ref|YP_930739.1| - 5.3e-05 23.6 8.4 0.00013 22.4 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119872732|ref|YP_930739.1| - 0.00016 22.4 8.2 0.059 14.1 0.3 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119872732|ref|YP_930739.1| - 0.00027 21.4 9.6 0.012 16.2 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|119872732|ref|YP_930739.1| - 0.00047 20.4 12.3 0.055 14.0 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119872732|ref|YP_930739.1| - 0.00086 19.8 10.8 0.067 13.7 11.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119872732|ref|YP_930739.1| - 0.0062 17.4 9.6 0.01 16.6 1.0 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119872732|ref|YP_930739.1| - 0.089 13.0 5.5 1.9 8.7 0.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|119872732|ref|YP_930739.1| - 0.14 12.3 5.9 1.1 9.5 0.6 2.1 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|119872732|ref|YP_930739.1| - 0.73 10.9 15.3 3.3 8.9 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|119872733|ref|YP_930740.1| - 3.2e-72 243.0 2.2 4.2e-72 242.6 2.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|119872733|ref|YP_930740.1| - 1.8e-29 102.1 0.1 6e-29 100.4 0.1 1.9 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|119872733|ref|YP_930740.1| - 0.0004 20.3 0.0 0.001 18.9 0.0 1.8 1 0 0 1 1 1 1 Transketolase, C-terminal domain ZnuA PF01297.17 gi|119872733|ref|YP_930740.1| - 0.14 11.5 1.3 0.23 10.8 1.3 1.3 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic TPP_enzyme_C PF02775.21 gi|119872734|ref|YP_930741.1| - 6e-26 91.1 0.5 8.9e-26 90.5 0.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain bZIP_1 PF00170.21 gi|119872734|ref|YP_930741.1| - 0.21 11.7 0.7 0.39 10.9 0.7 1.4 1 0 0 1 1 1 0 bZIP transcription factor CarboxypepD_reg PF13620.6 gi|119872735|ref|YP_930742.1| - 4.3e-07 30.1 1.8 4.3e-07 30.1 1.8 4.0 4 1 0 4 4 4 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|119872735|ref|YP_930742.1| - 0.0001 22.2 0.1 0.0019 18.1 0.1 2.8 2 0 0 2 2 2 1 CarboxypepD_reg-like domain fn3_3 PF14686.6 gi|119872735|ref|YP_930742.1| - 0.0098 15.7 0.5 0.038 13.8 0.1 2.2 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II Glyco_hydro_57 PF03065.15 gi|119872737|ref|YP_930744.1| - 4.4e-25 88.6 0.0 6.4e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3536 PF12055.8 gi|119872737|ref|YP_930744.1| - 2.6e-10 40.1 0.1 8.8e-06 25.2 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF3536) MFS_1 PF07690.16 gi|119872738|ref|YP_930745.1| - 2.1e-33 115.7 68.4 1.6e-25 89.8 38.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119872738|ref|YP_930745.1| - 0.00018 20.5 8.4 0.00018 20.5 8.4 2.9 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|119872738|ref|YP_930745.1| - 0.0015 17.5 13.9 0.097 11.5 0.1 3.6 2 2 0 2 2 2 2 MFS_1 like family DAD PF02109.16 gi|119872738|ref|YP_930745.1| - 0.15 12.3 1.4 0.27 11.6 0.1 2.1 2 0 0 2 2 2 0 DAD family PALP PF00291.25 gi|119872739|ref|YP_930746.1| - 2.3e-31 109.3 0.0 8.1e-31 107.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HTH_36 PF13730.6 gi|119872740|ref|YP_930747.1| - 0.005 16.8 0.0 0.016 15.2 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|119872740|ref|YP_930747.1| - 0.063 13.2 0.0 0.17 11.8 0.0 1.8 1 1 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|119872740|ref|YP_930747.1| - 0.16 12.4 0.0 0.31 11.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MlaE PF02405.16 gi|119872742|ref|YP_930749.1| - 0.14 11.8 0.1 0.19 11.4 0.1 1.2 1 0 0 1 1 1 0 Permease MlaE OrfB_Zn_ribbon PF07282.11 gi|119872743|ref|YP_930750.1| - 1.8e-10 40.6 0.0 4e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119872743|ref|YP_930750.1| - 0.0067 16.4 0.1 0.011 15.7 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|119872743|ref|YP_930750.1| - 0.011 15.4 1.4 0.022 14.4 1.4 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RPA_interact_C PF14768.6 gi|119872743|ref|YP_930750.1| - 0.03 14.9 0.2 0.061 13.9 0.2 1.5 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Prok-RING_1 PF14446.6 gi|119872743|ref|YP_930750.1| - 0.039 13.9 0.4 0.065 13.2 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.12 gi|119872743|ref|YP_930750.1| - 0.04 13.9 0.8 0.063 13.3 0.8 1.2 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_2 PF13240.6 gi|119872743|ref|YP_930750.1| - 0.045 13.5 2.9 0.086 12.6 2.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119872743|ref|YP_930750.1| - 0.045 13.5 4.8 1 9.2 5.0 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|119872743|ref|YP_930750.1| - 0.051 14.3 2.6 2.9 8.6 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.22 gi|119872743|ref|YP_930750.1| - 0.051 13.5 0.5 0.093 12.6 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|119872743|ref|YP_930750.1| - 0.061 12.9 1.5 0.14 11.7 1.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|119872743|ref|YP_930750.1| - 0.064 13.3 0.2 0.21 11.6 0.0 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rep_fac-A_C PF08646.10 gi|119872743|ref|YP_930750.1| - 0.065 13.0 0.3 0.12 12.1 0.3 1.3 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-ribbon_3 PF13248.6 gi|119872743|ref|YP_930750.1| - 0.083 12.3 1.2 11 5.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|119872743|ref|YP_930750.1| - 0.086 13.0 1.5 0.14 12.3 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.12 gi|119872743|ref|YP_930750.1| - 0.16 12.0 1.3 16 5.6 0.1 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger CpXC PF14353.6 gi|119872743|ref|YP_930750.1| - 0.19 11.7 0.8 12 6.0 0.3 2.6 1 1 1 2 2 2 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|119872743|ref|YP_930750.1| - 0.22 11.6 4.0 3.6 7.7 0.1 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.6 gi|119872743|ref|YP_930750.1| - 0.37 10.7 3.8 2.8 7.9 3.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119872743|ref|YP_930750.1| - 0.42 10.3 3.9 1.1 9.0 3.9 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.6 gi|119872743|ref|YP_930750.1| - 1.6 8.1 4.3 5.7 6.4 4.3 1.9 1 1 0 1 1 1 0 Transcription factor zinc-finger Macro PF01661.21 gi|119872744|ref|YP_930751.1| - 1.4e-36 125.1 0.0 1.8e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Macro domain Topoisom_bac PF01131.20 gi|119872746|ref|YP_930753.1| - 1.4e-76 258.2 0.0 2.2e-76 257.5 0.0 1.3 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|119872746|ref|YP_930753.1| - 1.2e-21 76.9 0.0 1.1e-20 73.8 0.0 2.7 2 0 0 2 2 2 1 Toprim domain zf_Rg PF17915.1 gi|119872746|ref|YP_930753.1| - 3.5e-15 55.1 0.7 8.2e-15 53.9 0.7 1.5 1 0 0 1 1 1 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|119872746|ref|YP_930753.1| - 1.6e-13 50.8 0.3 5.1e-13 49.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|119872746|ref|YP_930753.1| - 2.8e-07 30.7 0.0 7.3e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|119872746|ref|YP_930753.1| - 4.7e-07 30.1 0.0 0.0012 19.2 0.0 3.7 3 1 0 3 3 3 1 Helicase conserved C-terminal domain AAA_19 PF13245.6 gi|119872746|ref|YP_930753.1| - 0.002 18.5 0.2 0.0059 17.0 0.2 1.9 1 1 0 1 1 1 1 AAA domain SecA_DEAD PF07517.14 gi|119872746|ref|YP_930753.1| - 0.0032 16.8 0.0 0.0062 15.9 0.0 1.5 1 0 0 1 1 1 1 SecA DEAD-like domain AAA_25 PF13481.6 gi|119872746|ref|YP_930753.1| - 0.006 16.2 0.1 0.014 15.0 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119872746|ref|YP_930753.1| - 0.011 15.4 0.1 0.028 14.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|119872746|ref|YP_930753.1| - 0.033 13.1 0.0 0.077 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain Ofd1_CTDD PF10637.9 gi|119872746|ref|YP_930753.1| - 0.035 13.4 0.0 0.063 12.6 0.0 1.3 1 0 0 1 1 1 0 Oxoglutarate and iron-dependent oxygenase degradation C-term SRP54 PF00448.22 gi|119872746|ref|YP_930753.1| - 0.11 12.2 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Toprim_4 PF13662.6 gi|119872746|ref|YP_930753.1| - 0.12 12.8 0.0 1.5 9.4 0.0 2.7 2 0 0 2 2 2 0 Toprim domain AAA_23 PF13476.6 gi|119872746|ref|YP_930753.1| - 9 6.7 6.9 1.2e+02 3.1 6.9 2.4 1 1 0 1 1 1 0 AAA domain tRNA-synt_1 PF00133.22 gi|119872747|ref|YP_930754.1| - 1.3e-59 202.0 0.0 2.4e-58 197.8 0.0 2.4 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|119872747|ref|YP_930754.1| - 4.9e-27 94.7 0.1 1.1e-11 44.2 0.0 3.2 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|119872747|ref|YP_930754.1| - 1.4e-16 60.8 0.0 3.7e-16 59.4 0.0 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|119872747|ref|YP_930754.1| - 1.2e-09 37.9 0.0 2.5e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119872747|ref|YP_930754.1| - 2.1e-09 37.2 0.0 9.7e-06 25.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119872747|ref|YP_930754.1| - 0.021 13.8 0.0 0.3 10.0 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) NfeD PF01957.18 gi|119872748|ref|YP_930755.1| - 7.9e-07 29.4 6.3 1.3e-06 28.7 1.8 2.3 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding Methyltransf_25 PF13649.6 gi|119872748|ref|YP_930755.1| - 6.1e-05 23.6 0.0 0.0001 22.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872748|ref|YP_930755.1| - 0.001 19.7 0.0 0.002 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872748|ref|YP_930755.1| - 0.018 14.9 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872748|ref|YP_930755.1| - 0.025 14.4 0.1 0.083 12.7 0.1 1.7 2 0 0 2 2 2 0 Methyltransferase domain Sec62 PF03839.16 gi|119872748|ref|YP_930755.1| - 0.23 10.9 2.0 0.37 10.2 2.0 1.3 1 0 0 1 1 1 0 Translocation protein Sec62 HTH_5 PF01022.20 gi|119872749|ref|YP_930756.1| - 5.8e-07 29.3 0.0 9.9e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119872749|ref|YP_930756.1| - 8.1e-07 28.5 0.0 1.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Ribosomal_S25 PF03297.15 gi|119872749|ref|YP_930756.1| - 0.0011 19.1 0.0 0.015 15.5 0.0 1.9 1 1 1 2 2 2 1 S25 ribosomal protein HTH_DeoR PF08220.12 gi|119872749|ref|YP_930756.1| - 0.013 15.3 0.0 0.033 13.9 0.0 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|119872749|ref|YP_930756.1| - 0.021 14.6 0.0 0.04 13.7 0.0 1.4 2 0 0 2 2 2 0 LexA DNA binding domain TrmB PF01978.19 gi|119872749|ref|YP_930756.1| - 0.022 14.6 0.0 0.046 13.6 0.0 1.5 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Spindle_Spc25 PF08234.12 gi|119872749|ref|YP_930756.1| - 0.036 14.3 0.0 0.052 13.8 0.0 1.3 1 0 0 1 1 1 0 Chromosome segregation protein Spc25 HTH_41 PF14502.6 gi|119872749|ref|YP_930756.1| - 0.037 13.7 0.0 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Rhomboid PF01694.22 gi|119872750|ref|YP_930757.1| - 2.5e-38 131.4 20.4 2.5e-38 131.4 20.4 1.3 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|119872750|ref|YP_930757.1| - 0.032 14.8 0.5 0.032 14.8 0.5 2.7 3 1 0 3 3 3 0 Eukaryotic integral membrane protein (DUF1751) TrmB PF01978.19 gi|119872751|ref|YP_930758.1| - 6.7e-07 29.1 0.0 1.4e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|119872751|ref|YP_930758.1| - 2.2e-06 27.1 0.0 3.6e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119872751|ref|YP_930758.1| - 5.2e-06 26.3 0.1 1.2e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|119872751|ref|YP_930758.1| - 1e-05 25.2 0.0 2.1e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|119872751|ref|YP_930758.1| - 0.0001 22.4 0.0 0.00021 21.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|119872751|ref|YP_930758.1| - 0.00017 21.2 0.0 0.00038 20.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|119872751|ref|YP_930758.1| - 0.00025 20.7 0.1 0.00052 19.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|119872751|ref|YP_930758.1| - 0.00052 20.0 0.6 0.0012 18.8 0.1 1.8 2 0 0 2 2 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|119872751|ref|YP_930758.1| - 0.00056 20.0 0.4 0.0018 18.4 0.2 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|119872751|ref|YP_930758.1| - 0.0006 19.7 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119872751|ref|YP_930758.1| - 0.0014 18.7 0.0 0.0032 17.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|119872751|ref|YP_930758.1| - 0.0017 18.3 0.0 0.0037 17.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain SOG2 PF10428.9 gi|119872751|ref|YP_930758.1| - 0.0032 16.8 0.7 0.004 16.4 0.7 1.0 1 0 0 1 1 1 1 RAM signalling pathway protein DUF2250 PF10007.9 gi|119872751|ref|YP_930758.1| - 0.0062 16.6 0.0 0.01 15.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.6 gi|119872751|ref|YP_930758.1| - 0.036 14.6 0.0 0.076 13.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|119872751|ref|YP_930758.1| - 0.047 13.5 0.0 0.097 12.5 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RP-C PF03428.13 gi|119872751|ref|YP_930758.1| - 0.059 13.0 0.2 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_38 PF13936.6 gi|119872751|ref|YP_930758.1| - 0.069 12.9 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|119872751|ref|YP_930758.1| - 0.078 13.6 2.6 0.39 11.4 0.0 2.2 2 0 0 2 2 2 0 Replication protein A C terminal Penicillinase_R PF03965.16 gi|119872751|ref|YP_930758.1| - 0.078 13.3 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Penicillinase repressor HTH_11 PF08279.12 gi|119872751|ref|YP_930758.1| - 0.088 12.8 0.1 0.24 11.4 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_36 PF13730.6 gi|119872751|ref|YP_930758.1| - 0.16 12.0 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|119872751|ref|YP_930758.1| - 0.2 11.4 0.0 0.49 10.1 0.0 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 Radical_SAM PF04055.21 gi|119872753|ref|YP_930760.1| - 2.7e-11 44.1 0.0 5.2e-11 43.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|119872753|ref|YP_930760.1| - 1.4e-08 34.8 2.2 0.0014 18.4 0.0 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) ATPase PF06745.13 gi|119872754|ref|YP_930761.1| - 6.1e-20 71.6 0.0 7.9e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|119872754|ref|YP_930761.1| - 2.8e-06 26.9 0.2 0.00012 21.6 0.0 2.4 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain Elong_Iki1 PF10483.9 gi|119872754|ref|YP_930761.1| - 3.8e-06 26.6 0.0 4.2e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Elongator subunit Iki1 IstB_IS21 PF01695.17 gi|119872754|ref|YP_930761.1| - 1.7e-05 24.6 0.2 4.8e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|119872754|ref|YP_930761.1| - 3.2e-05 23.6 0.1 0.00037 20.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|119872754|ref|YP_930761.1| - 0.00066 19.7 0.0 0.00084 19.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|119872754|ref|YP_930761.1| - 0.0024 17.6 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|119872754|ref|YP_930761.1| - 0.023 14.6 0.1 0.066 13.1 0.1 1.9 1 1 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|119872754|ref|YP_930761.1| - 0.031 13.9 0.0 0.074 12.7 0.0 1.7 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Sigma54_activat PF00158.26 gi|119872754|ref|YP_930761.1| - 0.038 13.7 0.0 0.066 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain Zot PF05707.12 gi|119872754|ref|YP_930761.1| - 0.057 13.1 0.0 0.4 10.3 0.0 2.1 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_14 PF13173.6 gi|119872754|ref|YP_930761.1| - 0.059 13.4 0.0 0.16 12.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|119872754|ref|YP_930761.1| - 0.061 13.3 0.1 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|119872754|ref|YP_930761.1| - 0.093 13.2 0.2 0.36 11.3 0.2 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ArgoMid PF16487.5 gi|119872754|ref|YP_930761.1| - 0.097 12.9 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 Mid domain of argonaute ThiS-like PF14453.6 gi|119872754|ref|YP_930761.1| - 0.1 12.7 0.0 1.5 8.9 0.0 2.5 2 0 0 2 2 2 0 ThiS-like ubiquitin AAA_22 PF13401.6 gi|119872754|ref|YP_930761.1| - 0.12 12.6 0.0 0.25 11.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain Metallophos_2 PF12850.7 gi|119872755|ref|YP_930762.1| - 5.3e-18 65.7 0.0 7.1e-18 65.3 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|119872755|ref|YP_930762.1| - 7.3e-15 55.0 0.0 1.2e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|119872755|ref|YP_930762.1| - 1.7e-11 45.0 0.0 3.2e-11 44.1 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase RXLR_WY PF18634.1 gi|119872755|ref|YP_930762.1| - 0.13 12.2 0.2 0.24 11.3 0.2 1.3 1 0 0 1 1 1 0 RXLR phytopathogen effector protein WY-domain OrfB_Zn_ribbon PF07282.11 gi|119872756|ref|YP_930763.1| - 1.6e-09 37.5 0.0 2.8e-09 36.8 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119872756|ref|YP_930763.1| - 0.025 14.5 0.5 0.042 13.8 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|119872756|ref|YP_930763.1| - 0.045 13.8 0.2 0.073 13.1 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.11 gi|119872756|ref|YP_930763.1| - 0.097 12.8 0.5 0.43 10.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Auto_anti-p27 PF06677.12 gi|119872756|ref|YP_930763.1| - 0.13 12.5 3.3 0.25 11.5 3.3 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Di19 PF05605.12 gi|119872756|ref|YP_930763.1| - 0.18 12.1 2.3 13 6.2 0.1 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-ribbon_3 PF13248.6 gi|119872756|ref|YP_930763.1| - 0.24 10.9 1.2 4.3 6.9 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119872756|ref|YP_930763.1| - 0.64 10.2 2.8 6.3 7.0 0.1 2.3 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|119872756|ref|YP_930763.1| - 1.2 9.2 3.9 20 5.3 0.1 3.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|119872756|ref|YP_930763.1| - 2.3 8.0 4.3 6.5 6.5 4.3 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain eIF-1a PF01176.19 gi|119872757|ref|YP_930764.1| - 1e-23 82.9 0.1 1.2e-23 82.6 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 AAA_assoc_C PF09821.9 gi|119872758|ref|YP_930765.1| - 1.4e-21 77.3 0.3 3.3e-21 76.0 0.1 1.6 2 0 0 2 2 2 1 C-terminal AAA-associated domain HemN_C PF06969.16 gi|119872758|ref|YP_930765.1| - 0.033 14.2 0.0 0.5 10.5 0.0 2.6 3 0 0 3 3 3 0 HemN C-terminal domain PrkA PF06798.12 gi|119872758|ref|YP_930765.1| - 0.23 11.0 0.0 0.28 10.8 0.0 1.2 1 0 0 1 1 1 0 PrkA serine protein kinase C-terminal domain ABC_tran PF00005.27 gi|119872759|ref|YP_930766.1| - 4.5e-32 111.4 0.0 6.1e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872759|ref|YP_930766.1| - 1.2e-11 45.0 0.3 1.7e-06 28.1 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119872759|ref|YP_930766.1| - 0.00013 22.2 0.0 0.00038 20.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119872759|ref|YP_930766.1| - 0.00014 22.3 0.0 0.00026 21.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119872759|ref|YP_930766.1| - 0.00043 20.2 0.0 0.00076 19.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|119872759|ref|YP_930766.1| - 0.00045 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.29 gi|119872759|ref|YP_930766.1| - 0.0025 18.2 0.0 0.025 15.0 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|119872759|ref|YP_930766.1| - 0.0075 15.1 0.4 0.1 11.4 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class SMC_N PF02463.19 gi|119872759|ref|YP_930766.1| - 0.014 14.9 0.0 1.2 8.5 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|119872759|ref|YP_930766.1| - 0.018 14.6 0.1 0.043 13.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|119872759|ref|YP_930766.1| - 0.056 13.4 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|119872759|ref|YP_930766.1| - 0.063 13.2 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 NACHT domain G-alpha PF00503.20 gi|119872759|ref|YP_930766.1| - 0.07 12.3 0.0 0.099 11.8 0.0 1.5 1 1 0 1 1 1 0 G-protein alpha subunit ATP-synt_ab PF00006.25 gi|119872759|ref|YP_930766.1| - 0.073 12.7 0.0 0.094 12.4 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|119872759|ref|YP_930766.1| - 0.11 12.5 0.1 0.5 10.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ATPase_2 PF01637.18 gi|119872759|ref|YP_930766.1| - 0.12 12.3 0.1 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_28 PF13521.6 gi|119872759|ref|YP_930766.1| - 0.13 12.5 0.0 0.44 10.8 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|119872759|ref|YP_930766.1| - 0.13 12.7 0.0 0.2 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119872759|ref|YP_930766.1| - 0.18 11.9 0.1 0.48 10.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|119872760|ref|YP_930767.1| - 2.9e-20 72.8 51.5 3.6e-12 46.4 19.1 3.6 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component GDPD PF03009.17 gi|119872761|ref|YP_930768.1| - 3.3e-33 115.5 0.2 4.6e-25 88.8 0.1 2.1 1 1 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|119872761|ref|YP_930768.1| - 1e-05 25.8 0.7 9.3e-05 22.8 1.2 2.1 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family DHquinase_I PF01487.15 gi|119872761|ref|YP_930768.1| - 0.017 15.4 0.1 0.024 14.9 0.1 1.1 1 0 0 1 1 1 0 Type I 3-dehydroquinase ThiF PF00899.21 gi|119872762|ref|YP_930769.1| - 2.2e-62 210.6 0.0 2.6e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family TfuA PF07812.12 gi|119872762|ref|YP_930769.1| - 0.008 15.9 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 TfuA-like protein Sacchrp_dh_NADP PF03435.18 gi|119872762|ref|YP_930769.1| - 0.0085 16.4 1.2 0.038 14.2 1.2 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|119872762|ref|YP_930769.1| - 0.098 12.9 0.5 0.21 11.8 0.3 1.6 1 1 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|119872762|ref|YP_930769.1| - 0.15 11.4 0.3 0.3 10.4 0.3 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|119872762|ref|YP_930769.1| - 0.15 12.1 0.2 0.41 10.7 0.1 1.7 1 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase OrfB_Zn_ribbon PF07282.11 gi|119872763|ref|YP_930770.1| - 2.5e-12 46.5 0.3 7.3e-12 45.0 0.0 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|119872763|ref|YP_930770.1| - 0.0025 18.0 0.0 0.0049 17.1 0.0 1.5 1 0 0 1 1 1 1 Probable transposase zf-NADH-PPase PF09297.11 gi|119872763|ref|YP_930770.1| - 0.003 17.2 8.9 0.003 17.2 8.9 1.9 2 0 0 2 2 1 1 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|119872763|ref|YP_930770.1| - 0.0098 15.8 0.4 0.021 14.8 0.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 RNHCP PF12647.7 gi|119872763|ref|YP_930770.1| - 0.016 15.1 0.1 0.03 14.3 0.1 1.4 1 0 0 1 1 1 0 RNHCP domain zinc_ribbon_2 PF13240.6 gi|119872763|ref|YP_930770.1| - 0.017 14.8 0.7 1 9.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|119872763|ref|YP_930770.1| - 0.017 13.9 0.0 0.023 13.5 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|119872763|ref|YP_930770.1| - 0.021 14.8 0.7 0.035 14.1 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|119872763|ref|YP_930770.1| - 0.048 13.1 1.3 3.2 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|119872763|ref|YP_930770.1| - 0.076 13.1 0.3 0.19 11.8 0.3 1.7 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Auto_anti-p27 PF06677.12 gi|119872763|ref|YP_930770.1| - 0.077 13.2 1.7 0.12 12.5 1.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|119872763|ref|YP_930770.1| - 0.086 12.9 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|119872763|ref|YP_930770.1| - 0.17 11.8 0.2 0.28 11.1 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|119872763|ref|YP_930770.1| - 0.18 11.4 0.9 4.6 6.8 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|119872763|ref|YP_930770.1| - 0.18 11.8 0.5 0.28 11.2 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons CpXC PF14353.6 gi|119872763|ref|YP_930770.1| - 0.45 10.6 1.3 18 5.4 0.1 2.5 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_4 PF13717.6 gi|119872763|ref|YP_930770.1| - 0.87 9.6 4.9 15 5.6 4.9 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF2721 PF11026.8 gi|119872763|ref|YP_930770.1| - 1 9.2 3.0 1.2 9.0 0.7 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2721) Zn_Tnp_IS1595 PF12760.7 gi|119872763|ref|YP_930770.1| - 2.6 8.1 6.1 7.2 6.7 5.3 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|119872763|ref|YP_930770.1| - 3 8.0 5.6 15 5.8 5.6 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C4_Topoisom PF01396.19 gi|119872763|ref|YP_930770.1| - 3.6 7.4 5.4 5.3 6.9 0.4 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.7 gi|119872763|ref|YP_930770.1| - 3.8 8.0 10.8 0.35 11.3 0.4 3.1 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|119872763|ref|YP_930770.1| - 3.9 7.7 5.8 6 7.1 0.5 2.3 1 1 0 1 1 1 0 Zinc ribbon domain ATP-synt_ab PF00006.25 gi|119872764|ref|YP_930771.1| - 2.1e-64 217.1 0.0 2.8e-64 216.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|119872764|ref|YP_930771.1| - 6.2e-08 33.1 1.7 1.5e-07 31.8 1.7 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain NAD_binding_2 PF03446.15 gi|119872765|ref|YP_930772.1| - 1.8e-50 171.2 0.3 2.8e-50 170.6 0.3 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|119872765|ref|YP_930772.1| - 4.6e-28 97.9 0.4 6.8e-28 97.4 0.4 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|119872765|ref|YP_930772.1| - 6.6e-06 26.6 0.1 1.8e-05 25.2 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|119872765|ref|YP_930772.1| - 7.9e-06 25.3 0.0 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|119872765|ref|YP_930772.1| - 2.9e-05 24.9 0.0 6.1e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Shikimate_DH PF01488.20 gi|119872765|ref|YP_930772.1| - 0.00028 20.9 0.0 0.00057 20.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|119872765|ref|YP_930772.1| - 0.0011 18.8 0.4 0.008 16.1 0.3 2.3 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|119872765|ref|YP_930772.1| - 0.0018 17.9 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|119872765|ref|YP_930772.1| - 0.011 15.3 0.0 0.023 14.3 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain UDPG_MGDP_dh PF00984.19 gi|119872765|ref|YP_930772.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DUF1967 PF09269.11 gi|119872765|ref|YP_930772.1| - 0.14 12.1 0.1 0.42 10.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DAO PF01266.24 gi|119872765|ref|YP_930772.1| - 0.21 11.2 0.8 5.6 6.4 0.3 2.1 1 1 0 2 2 2 0 FAD dependent oxidoreductase CoA_transf_3 PF02515.17 gi|119872766|ref|YP_930773.1| - 4.2e-90 302.5 0.0 5.5e-90 302.1 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.17 gi|119872767|ref|YP_930774.1| - 6.6e-48 163.7 0.0 1.1e-47 162.9 0.0 1.3 1 1 0 1 1 1 1 CoA-transferase family III Acetyltransf_1 PF00583.25 gi|119872769|ref|YP_930776.1| - 4.2e-11 43.1 0.3 6.4e-11 42.5 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|119872769|ref|YP_930776.1| - 3.6e-08 33.2 0.1 6.1e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 FR47-like protein PanZ PF12568.8 gi|119872769|ref|YP_930776.1| - 2.4e-07 30.5 0.4 3.4e-07 30.1 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_6 PF13480.7 gi|119872769|ref|YP_930776.1| - 1.1e-05 25.6 0.3 1.9e-05 24.8 0.3 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119872769|ref|YP_930776.1| - 3.5e-05 24.2 0.0 5.4e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119872769|ref|YP_930776.1| - 0.00058 19.8 0.0 0.00079 19.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|119872769|ref|YP_930776.1| - 0.0058 16.2 0.0 0.0094 15.5 0.0 1.3 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_CG PF14542.6 gi|119872769|ref|YP_930776.1| - 0.013 15.6 0.1 0.023 14.8 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|119872769|ref|YP_930776.1| - 0.045 13.8 0.2 0.48 10.5 0.2 2.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119872769|ref|YP_930776.1| - 0.11 13.2 0.0 0.17 12.6 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CBFD_NFYB_HMF PF00808.23 gi|119872771|ref|YP_930778.1| - 0.13 12.6 0.2 0.22 11.8 0.2 1.4 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7TMR-DISM_7TM PF07695.11 gi|119872772|ref|YP_930779.1| - 0.09 12.7 4.8 0.12 12.3 4.8 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling SNase PF00565.17 gi|119872774|ref|YP_930781.1| - 0.0058 17.1 0.0 0.011 16.2 0.0 1.5 1 0 0 1 1 1 1 Staphylococcal nuclease homologue MGC-24 PF05283.11 gi|119872774|ref|YP_930781.1| - 0.12 12.8 7.8 0.21 12.0 7.8 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Stevor PF17410.2 gi|119872774|ref|YP_930781.1| - 0.28 10.7 2.2 0.4 10.2 2.2 1.2 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame Zip PF02535.22 gi|119872776|ref|YP_930783.1| - 0.067 12.4 2.0 0.075 12.2 2.0 1.0 1 0 0 1 1 1 0 ZIP Zinc transporter Sec62 PF03839.16 gi|119872776|ref|YP_930783.1| - 0.21 11.1 0.9 0.26 10.8 0.9 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 SPW PF03779.14 gi|119872778|ref|YP_930785.1| - 0.66 9.6 11.7 0.16 11.6 5.9 2.5 2 0 0 2 2 2 0 SPW repeat OrfB_Zn_ribbon PF07282.11 gi|119872779|ref|YP_930786.1| - 1.1e-12 47.6 0.0 2.3e-12 46.6 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain HypA PF01155.19 gi|119872779|ref|YP_930786.1| - 0.0029 17.6 0.2 0.031 14.3 0.0 2.4 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYDLN_acid PF09538.10 gi|119872779|ref|YP_930786.1| - 0.0032 18.1 0.2 0.0065 17.1 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) FliH PF02108.16 gi|119872779|ref|YP_930786.1| - 0.0032 17.5 0.2 0.0095 16.0 0.2 1.8 1 1 0 1 1 1 1 Flagellar assembly protein FliH zinc_ribbon_2 PF13240.6 gi|119872779|ref|YP_930786.1| - 0.0049 16.5 2.4 0.0098 15.6 2.4 1.5 1 0 0 1 1 1 1 zinc-ribbon domain RNHCP PF12647.7 gi|119872779|ref|YP_930786.1| - 0.0053 16.7 0.6 0.0094 15.9 0.6 1.3 1 0 0 1 1 1 1 RNHCP domain zf-NADH-PPase PF09297.11 gi|119872779|ref|YP_930786.1| - 0.0077 15.9 4.1 0.015 14.9 4.1 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain FYVE PF01363.21 gi|119872779|ref|YP_930786.1| - 0.0088 16.2 0.5 0.015 15.4 0.5 1.3 1 0 0 1 1 1 1 FYVE zinc finger DZR PF12773.7 gi|119872779|ref|YP_930786.1| - 0.021 14.9 1.1 0.036 14.1 1.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|119872779|ref|YP_930786.1| - 0.022 14.6 0.4 0.04 13.8 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.6 gi|119872779|ref|YP_930786.1| - 0.031 14.3 0.5 2.7 8.1 0.1 2.6 1 1 1 2 2 2 0 CpXC protein zinc-ribbons_6 PF07191.12 gi|119872779|ref|YP_930786.1| - 0.054 13.5 0.7 0.087 12.8 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|119872779|ref|YP_930786.1| - 0.076 13.1 0.5 0.15 12.2 0.5 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HYPF PF07503.12 gi|119872779|ref|YP_930786.1| - 0.11 12.3 2.0 0.26 11.1 2.0 1.7 1 0 0 1 1 1 0 HypF finger Ogr_Delta PF04606.12 gi|119872779|ref|YP_930786.1| - 0.14 12.2 4.3 1.2 9.2 1.2 2.4 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger Auto_anti-p27 PF06677.12 gi|119872779|ref|YP_930786.1| - 0.14 12.3 2.1 0.25 11.5 2.1 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|119872779|ref|YP_930786.1| - 0.15 12.1 2.0 2.6 8.1 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HCV_NS1 PF01560.17 gi|119872779|ref|YP_930786.1| - 0.21 10.3 0.0 0.31 9.7 0.0 1.2 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 zf-ribbon_3 PF13248.6 gi|119872779|ref|YP_930786.1| - 0.26 10.7 5.7 1.2 8.6 5.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37e PF01907.19 gi|119872779|ref|YP_930786.1| - 0.35 11.1 1.4 0.59 10.3 1.4 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-TFIIB PF13453.6 gi|119872779|ref|YP_930786.1| - 0.37 10.2 2.7 0.99 8.8 2.7 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger DNA_RNApol_7kD PF03604.13 gi|119872779|ref|YP_930786.1| - 0.47 10.2 2.3 1 9.1 2.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Nudix_N_2 PF14803.6 gi|119872779|ref|YP_930786.1| - 0.54 10.2 4.0 3.2 7.7 4.0 2.2 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|119872779|ref|YP_930786.1| - 0.55 10.4 3.6 1.7 8.8 3.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-ISL3 PF14690.6 gi|119872779|ref|YP_930786.1| - 0.66 10.7 5.2 8.6 7.1 0.5 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.7 gi|119872779|ref|YP_930786.1| - 2.9 8.3 4.4 7 7.1 0.3 2.8 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.7 gi|119872779|ref|YP_930786.1| - 5.3 7.1 6.5 28 4.8 5.8 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PseudoU_synth_1 PF01416.20 gi|119872780|ref|YP_930787.1| - 8.9e-18 64.7 0.0 2.1e-17 63.5 0.0 1.6 2 0 0 2 2 2 1 tRNA pseudouridine synthase UBA_6 PF18039.1 gi|119872781|ref|YP_930788.1| - 0.066 13.2 0.6 21 5.1 0.0 3.0 3 0 0 3 3 3 0 UBA-like domain Molydop_binding PF01568.21 gi|119872782|ref|YP_930789.1| - 0.0015 18.6 0.0 0.0028 17.7 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_2 PF02933.17 gi|119872782|ref|YP_930789.1| - 0.016 15.0 0.3 0.34 10.7 0.0 2.2 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 TP_methylase PF00590.20 gi|119872783|ref|YP_930790.1| - 5.2e-33 114.8 0.2 6.1e-33 114.6 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases PS_Dcarbxylase PF02666.15 gi|119872783|ref|YP_930790.1| - 0.048 13.2 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphatidylserine decarboxylase GAS PF13851.6 gi|119872785|ref|YP_930792.1| - 2.4e-08 33.6 24.4 5.9e-06 25.8 13.8 2.6 1 1 2 3 3 3 2 Growth-arrest specific micro-tubule binding Nup54 PF13874.6 gi|119872785|ref|YP_930792.1| - 5.3e-08 33.1 23.8 0.00012 22.2 7.3 2.1 1 1 1 2 2 2 2 Nucleoporin complex subunit 54 ATG16 PF08614.11 gi|119872785|ref|YP_930792.1| - 9.2e-08 32.6 29.8 1e-06 29.1 29.5 2.2 1 1 0 1 1 1 1 Autophagy protein 16 (ATG16) ADIP PF11559.8 gi|119872785|ref|YP_930792.1| - 1.6e-06 28.3 27.0 0.0011 19.0 4.7 3.2 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding EzrA PF06160.12 gi|119872785|ref|YP_930792.1| - 1.7e-06 26.5 18.4 0.00044 18.6 6.0 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA Spc7 PF08317.11 gi|119872785|ref|YP_930792.1| - 3e-06 26.3 25.2 0.0006 18.8 17.4 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein Myosin_tail_1 PF01576.19 gi|119872785|ref|YP_930792.1| - 3.8e-06 25.0 18.2 5.1e-06 24.6 18.2 1.1 1 0 0 1 1 1 1 Myosin tail FPP PF05911.11 gi|119872785|ref|YP_930792.1| - 7.9e-06 24.4 15.6 0.00021 19.7 15.4 2.1 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil TMF_DNA_bd PF12329.8 gi|119872785|ref|YP_930792.1| - 8.7e-06 25.6 19.5 0.01 15.8 0.3 3.5 2 1 0 3 3 3 2 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.12 gi|119872785|ref|YP_930792.1| - 1.1e-05 25.4 10.8 0.027 14.5 4.4 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Jnk-SapK_ap_N PF09744.9 gi|119872785|ref|YP_930792.1| - 1.4e-05 25.3 21.3 0.001 19.3 12.8 2.3 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 MscS_porin PF12795.7 gi|119872785|ref|YP_930792.1| - 1.5e-05 24.7 40.5 2.5e-05 24.0 40.5 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain Seryl_tRNA_N PF02403.22 gi|119872785|ref|YP_930792.1| - 2.2e-05 24.7 17.5 0.041 14.1 10.7 3.5 2 1 1 3 3 3 2 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.9 gi|119872785|ref|YP_930792.1| - 2.4e-05 24.4 21.4 5.8e-05 23.1 12.9 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ZapB PF06005.12 gi|119872785|ref|YP_930792.1| - 3e-05 24.4 32.7 0.011 16.2 2.4 4.3 1 1 3 4 4 4 2 Cell division protein ZapB IFT57 PF10498.9 gi|119872785|ref|YP_930792.1| - 3.5e-05 22.9 18.8 0.00075 18.6 7.3 2.7 1 1 3 4 4 4 2 Intra-flagellar transport protein 57 DUF4201 PF13870.6 gi|119872785|ref|YP_930792.1| - 4e-05 23.4 17.5 4e-05 23.4 17.5 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) Prefoldin PF02996.17 gi|119872785|ref|YP_930792.1| - 5.4e-05 23.1 24.0 0.018 14.9 2.4 4.4 1 1 3 4 4 4 2 Prefoldin subunit DUF724 PF05266.14 gi|119872785|ref|YP_930792.1| - 5.8e-05 23.0 12.3 0.0026 17.6 3.6 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF724) Filament PF00038.21 gi|119872785|ref|YP_930792.1| - 6e-05 22.8 24.6 0.00014 21.6 11.7 2.1 1 1 1 2 2 2 1 Intermediate filament protein APG6_N PF17675.1 gi|119872785|ref|YP_930792.1| - 7.7e-05 23.2 32.6 0.0011 19.5 21.1 2.6 1 1 1 2 2 2 2 Apg6 coiled-coil region HIP1_clath_bdg PF16515.5 gi|119872785|ref|YP_930792.1| - 7.7e-05 23.2 1.5 7.7e-05 23.2 1.5 3.0 2 1 1 3 3 3 1 Clathrin-binding domain of Huntingtin-interacting protein 1 WXG100 PF06013.12 gi|119872785|ref|YP_930792.1| - 8e-05 22.8 20.8 0.051 13.8 0.6 3.9 2 1 1 3 3 3 2 Proteins of 100 residues with WXG MAD PF05557.13 gi|119872785|ref|YP_930792.1| - 0.00013 20.5 21.6 0.00017 20.1 21.6 1.1 1 0 0 1 1 1 1 Mitotic checkpoint protein Taxilin PF09728.9 gi|119872785|ref|YP_930792.1| - 0.00022 20.5 22.4 0.00024 20.4 19.1 2.0 1 1 0 1 1 1 1 Myosin-like coiled-coil protein SHE3 PF17078.5 gi|119872785|ref|YP_930792.1| - 0.00028 20.7 22.1 0.00078 19.2 22.1 1.7 1 1 0 1 1 1 1 SWI5-dependent HO expression protein 3 TACC_C PF05010.14 gi|119872785|ref|YP_930792.1| - 0.00028 20.7 18.0 0.00051 19.9 17.8 1.5 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Phage_GP20 PF06810.11 gi|119872785|ref|YP_930792.1| - 0.00029 20.7 18.3 0.0062 16.3 4.4 3.0 1 1 3 4 4 4 3 Phage minor structural protein GP20 Prefoldin_2 PF01920.20 gi|119872785|ref|YP_930792.1| - 0.0003 20.7 23.6 0.029 14.3 1.1 4.5 1 1 2 4 4 3 1 Prefoldin subunit DHR10 PF18595.1 gi|119872785|ref|YP_930792.1| - 0.00033 20.7 32.8 0.17 11.9 3.2 3.3 1 1 2 3 3 3 2 Designed helical repeat protein 10 domain DUF4407 PF14362.6 gi|119872785|ref|YP_930792.1| - 0.00037 19.9 28.7 0.0058 16.0 19.9 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) FlaC_arch PF05377.11 gi|119872785|ref|YP_930792.1| - 0.0004 20.7 7.7 6.1 7.3 0.9 4.6 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|119872785|ref|YP_930792.1| - 0.00043 20.5 20.9 0.085 13.1 1.0 4.1 1 1 2 3 3 3 2 Domain of unknown function (DUF5082) FlxA PF14282.6 gi|119872785|ref|YP_930792.1| - 0.00043 20.2 25.7 0.0058 16.6 12.2 2.7 1 1 1 2 2 2 1 FlxA-like protein DUF2968 PF11180.8 gi|119872785|ref|YP_930792.1| - 0.00044 19.9 17.9 0.00044 19.9 17.9 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF2968) PspA_IM30 PF04012.12 gi|119872785|ref|YP_930792.1| - 0.00055 19.6 32.1 0.16 11.5 21.2 3.0 1 1 1 2 2 2 2 PspA/IM30 family Cep57_MT_bd PF06657.13 gi|119872785|ref|YP_930792.1| - 0.00062 20.2 21.7 2 8.9 3.4 4.9 2 1 3 5 5 5 0 Centrosome microtubule-binding domain of Cep57 Rab5-bind PF09311.11 gi|119872785|ref|YP_930792.1| - 0.00069 19.1 21.8 0.12 11.7 14.5 2.9 1 1 1 2 2 2 2 Rabaptin-like protein Cnn_1N PF07989.11 gi|119872785|ref|YP_930792.1| - 0.00069 19.7 14.1 0.0042 17.2 4.2 2.8 1 1 2 3 3 3 1 Centrosomin N-terminal motif 1 AAA_13 PF13166.6 gi|119872785|ref|YP_930792.1| - 0.00075 18.3 13.4 0.0013 17.5 13.4 1.4 1 0 0 1 1 1 1 AAA domain T4SS PF07996.11 gi|119872785|ref|YP_930792.1| - 0.00076 19.9 28.8 0.022 15.2 17.2 2.5 1 1 1 2 2 2 2 Type IV secretion system proteins CdvA PF18822.1 gi|119872785|ref|YP_930792.1| - 0.0008 19.2 19.1 0.11 12.3 1.2 3.6 1 1 3 4 4 3 1 CdvA-like coiled-coil domain DivIC PF04977.15 gi|119872785|ref|YP_930792.1| - 0.00094 18.9 31.5 0.0054 16.5 3.1 4.3 1 1 2 4 4 4 1 Septum formation initiator THOC7 PF05615.13 gi|119872785|ref|YP_930792.1| - 0.001 19.4 23.1 0.0035 17.6 8.7 2.5 1 1 1 2 2 2 1 Tho complex subunit 7 T3SSipB PF16535.5 gi|119872785|ref|YP_930792.1| - 0.0011 19.5 17.2 0.0011 19.5 17.2 2.4 1 1 0 2 2 2 1 Type III cell invasion protein SipB Prominin PF05478.11 gi|119872785|ref|YP_930792.1| - 0.0011 17.1 4.4 0.0015 16.6 4.4 1.2 1 0 0 1 1 1 1 Prominin YabA PF06156.13 gi|119872785|ref|YP_930792.1| - 0.0012 19.4 16.5 1.2 9.9 1.7 3.3 1 1 1 2 2 2 0 Initiation control protein YabA DUF4686 PF15742.5 gi|119872785|ref|YP_930792.1| - 0.0012 18.0 23.4 0.0018 17.5 23.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4686) ABC_tran_CTD PF16326.5 gi|119872785|ref|YP_930792.1| - 0.0013 18.9 27.3 0.4 11.0 5.0 4.4 1 1 2 3 3 3 2 ABC transporter C-terminal domain DUF3450 PF11932.8 gi|119872785|ref|YP_930792.1| - 0.0014 18.0 33.1 0.1 11.9 7.2 3.4 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) DUF2730 PF10805.8 gi|119872785|ref|YP_930792.1| - 0.0018 18.4 10.3 0.07 13.2 4.6 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) HMMR_N PF15905.5 gi|119872785|ref|YP_930792.1| - 0.0018 17.8 22.1 0.37 10.2 9.8 1.9 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal Baculo_PEP_C PF04513.12 gi|119872785|ref|YP_930792.1| - 0.002 18.2 17.8 0.073 13.1 11.0 2.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.8 gi|119872785|ref|YP_930792.1| - 0.0022 15.6 20.7 0.0043 14.7 20.7 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) BLOC1_2 PF10046.9 gi|119872785|ref|YP_930792.1| - 0.0024 18.1 21.3 0.27 11.5 2.2 4.0 1 1 3 4 4 4 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 XhlA PF10779.9 gi|119872785|ref|YP_930792.1| - 0.0024 18.0 10.9 6.7 7.0 0.2 4.3 2 1 1 4 4 4 0 Haemolysin XhlA DUF4795 PF16043.5 gi|119872785|ref|YP_930792.1| - 0.0024 17.5 18.2 0.08 12.5 11.5 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4795) HOOK PF05622.12 gi|119872785|ref|YP_930792.1| - 0.0025 16.0 23.7 0.0069 14.6 23.7 1.6 1 1 0 1 1 1 1 HOOK protein DUF4763 PF15960.5 gi|119872785|ref|YP_930792.1| - 0.0028 17.0 25.3 0.066 12.5 3.6 2.9 1 1 2 3 3 3 1 Domain of unknown function (DUF4763) DUF4618 PF15397.6 gi|119872785|ref|YP_930792.1| - 0.0029 17.1 15.9 0.78 9.1 15.2 3.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4618) TPR_MLP1_2 PF07926.12 gi|119872785|ref|YP_930792.1| - 0.003 17.6 34.8 0.023 14.8 19.7 2.4 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein Tektin PF03148.14 gi|119872785|ref|YP_930792.1| - 0.0031 16.3 23.5 0.021 13.6 13.8 2.3 1 1 1 2 2 2 1 Tektin family SlyX PF04102.12 gi|119872785|ref|YP_930792.1| - 0.0032 18.0 29.0 2 9.1 6.9 4.1 1 1 2 3 3 3 0 SlyX SLATT_5 PF18160.1 gi|119872785|ref|YP_930792.1| - 0.0033 16.8 1.3 0.0061 15.9 1.3 1.5 1 0 0 1 1 1 1 SMODS and SLOG-associating 2TM effector domain family 5 BRE1 PF08647.11 gi|119872785|ref|YP_930792.1| - 0.0034 17.4 26.2 0.22 11.6 2.0 3.2 1 1 2 3 3 3 2 BRE1 E3 ubiquitin ligase KASH_CCD PF14662.6 gi|119872785|ref|YP_930792.1| - 0.0038 17.1 22.1 0.13 12.1 12.8 2.2 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH DivIVA PF05103.13 gi|119872785|ref|YP_930792.1| - 0.0053 16.9 25.0 0.037 14.1 12.4 3.3 2 1 1 3 3 3 1 DivIVA protein bZIP_2 PF07716.15 gi|119872785|ref|YP_930792.1| - 0.0056 16.7 3.1 0.0056 16.7 3.1 4.4 5 0 0 5 5 3 1 Basic region leucine zipper NPV_P10 PF05531.12 gi|119872785|ref|YP_930792.1| - 0.0057 17.1 15.6 0.94 10.0 2.7 3.5 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein YscO PF07321.12 gi|119872785|ref|YP_930792.1| - 0.0065 16.4 32.2 0.049 13.6 14.4 2.9 1 1 2 3 3 3 2 Type III secretion protein YscO CENP-K PF11802.8 gi|119872785|ref|YP_930792.1| - 0.0068 16.0 10.5 0.012 15.2 10.5 1.4 1 0 0 1 1 1 1 Centromere-associated protein K FapA PF03961.13 gi|119872785|ref|YP_930792.1| - 0.007 15.0 6.2 0.007 15.0 6.2 2.6 1 1 2 3 3 3 2 Flagellar Assembly Protein A bZIP_1 PF00170.21 gi|119872785|ref|YP_930792.1| - 0.0071 16.4 17.6 0.024 14.8 1.3 4.4 3 2 2 5 5 3 1 bZIP transcription factor Laminin_II PF06009.12 gi|119872785|ref|YP_930792.1| - 0.0076 16.3 16.6 0.71 9.9 0.5 2.4 1 1 1 2 2 2 2 Laminin Domain II Fmp27_WPPW PF10359.9 gi|119872785|ref|YP_930792.1| - 0.0083 15.0 13.3 0.05 12.5 5.8 2.1 1 1 1 2 2 2 1 RNA pol II promoter Fmp27 protein domain TMF_TATA_bd PF12325.8 gi|119872785|ref|YP_930792.1| - 0.0087 16.3 21.4 0.37 11.0 13.4 3.1 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding LXG PF04740.12 gi|119872785|ref|YP_930792.1| - 0.0089 15.8 17.0 0.019 14.7 11.4 2.3 1 1 1 2 2 2 1 LXG domain of WXG superfamily TSC22 PF01166.18 gi|119872785|ref|YP_930792.1| - 0.0098 16.2 7.4 0.36 11.2 0.2 3.6 2 1 2 4 4 4 1 TSC-22/dip/bun family Tup_N PF08581.10 gi|119872785|ref|YP_930792.1| - 0.01 16.1 19.2 2.8 8.3 0.2 4.1 1 1 1 3 3 3 0 Tup N-terminal DUF812 PF05667.11 gi|119872785|ref|YP_930792.1| - 0.011 14.7 18.1 0.016 14.2 18.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF4094 PF13334.6 gi|119872785|ref|YP_930792.1| - 0.012 16.1 7.7 0.27 11.7 0.1 3.8 3 1 0 3 3 2 0 Domain of unknown function (DUF4094) Sec2p PF06428.11 gi|119872785|ref|YP_930792.1| - 0.012 15.6 24.6 0.57 10.2 5.5 3.5 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p CENP-Q PF13094.6 gi|119872785|ref|YP_930792.1| - 0.013 15.7 27.1 0.27 11.4 16.5 3.1 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DegS PF05384.11 gi|119872785|ref|YP_930792.1| - 0.014 14.9 20.1 0.15 11.6 8.1 3.1 1 1 2 3 3 3 0 Sensor protein DegS DUF4472 PF14739.6 gi|119872785|ref|YP_930792.1| - 0.015 16.1 21.7 0.082 13.6 2.6 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) UPF0242 PF06785.11 gi|119872785|ref|YP_930792.1| - 0.015 15.4 25.5 0.07 13.2 15.0 3.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Uds1 PF15456.6 gi|119872785|ref|YP_930792.1| - 0.017 15.3 21.7 0.23 11.6 12.3 2.9 1 1 1 2 2 2 0 Up-regulated During Septation Syntaxin-6_N PF09177.11 gi|119872785|ref|YP_930792.1| - 0.017 15.7 14.0 1.1 9.8 5.0 3.3 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Lebercilin PF15619.6 gi|119872785|ref|YP_930792.1| - 0.02 14.6 27.9 0.52 9.9 27.7 2.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Yuri_gagarin PF15934.5 gi|119872785|ref|YP_930792.1| - 0.02 14.7 14.7 0.042 13.7 14.7 1.5 1 1 0 1 1 1 0 Yuri gagarin AIP3 PF03915.13 gi|119872785|ref|YP_930792.1| - 0.021 14.0 7.0 0.033 13.3 7.0 1.2 1 0 0 1 1 1 0 Actin interacting protein 3 Golgin_A5 PF09787.9 gi|119872785|ref|YP_930792.1| - 0.021 14.3 21.0 0.072 12.6 14.0 2.2 1 1 1 2 2 2 0 Golgin subfamily A member 5 Fez1 PF06818.15 gi|119872785|ref|YP_930792.1| - 0.021 15.3 19.9 0.08 13.4 11.3 2.2 1 1 1 2 2 2 0 Fez1 CENP-H PF05837.12 gi|119872785|ref|YP_930792.1| - 0.021 15.2 24.6 0.2 12.1 3.3 2.9 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Spc24 PF08286.11 gi|119872785|ref|YP_930792.1| - 0.023 14.9 25.3 0.74 10.1 2.4 4.3 1 1 1 2 2 1 0 Spc24 subunit of Ndc80 TolA_bind_tri PF16331.5 gi|119872785|ref|YP_930792.1| - 0.026 14.6 30.9 0.23 11.5 9.1 4.0 1 1 3 4 4 4 0 TolA binding protein trimerisation Leu_zip PF15294.6 gi|119872785|ref|YP_930792.1| - 0.03 13.9 18.1 0.013 15.0 9.6 2.2 1 1 1 2 2 2 0 Leucine zipper ArsR PF09824.9 gi|119872785|ref|YP_930792.1| - 0.031 13.9 2.3 0.45 10.1 0.2 3.0 1 1 3 4 4 4 0 ArsR transcriptional regulator DUF4140 PF13600.6 gi|119872785|ref|YP_930792.1| - 0.031 14.7 28.5 0.26 11.7 4.6 4.7 2 1 2 4 4 3 0 N-terminal domain of unknown function (DUF4140) DUF713 PF05218.14 gi|119872785|ref|YP_930792.1| - 0.032 14.0 4.6 1.3 8.7 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF713) PI3K_P85_iSH2 PF16454.5 gi|119872785|ref|YP_930792.1| - 0.034 13.7 21.3 0.64 9.6 5.7 3.6 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ALIX_LYPXL_bnd PF13949.6 gi|119872785|ref|YP_930792.1| - 0.035 13.4 19.9 0.091 12.0 19.4 1.8 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV CLZ PF16526.5 gi|119872785|ref|YP_930792.1| - 0.037 14.4 22.5 0.37 11.2 1.8 4.3 1 1 4 5 5 4 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels JIP_LZII PF16471.5 gi|119872785|ref|YP_930792.1| - 0.038 14.2 12.6 3.3 7.9 0.1 3.6 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II Fib_alpha PF08702.10 gi|119872785|ref|YP_930792.1| - 0.039 14.1 17.5 0.4 10.9 7.4 2.6 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Macoilin PF09726.9 gi|119872785|ref|YP_930792.1| - 0.04 12.5 23.7 0.014 14.0 13.3 1.9 1 1 1 2 2 2 0 Macoilin family DUF4200 PF13863.6 gi|119872785|ref|YP_930792.1| - 0.041 14.3 24.9 0.42 11.0 1.6 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4200) Tropomyosin_1 PF12718.7 gi|119872785|ref|YP_930792.1| - 0.041 14.0 21.0 0.53 10.4 11.9 2.4 1 1 1 2 2 2 0 Tropomyosin like Filo_VP35 PF02097.15 gi|119872785|ref|YP_930792.1| - 0.042 12.9 4.7 2 7.4 0.1 2.7 1 1 2 3 3 3 0 Filoviridae VP35 FH2 PF02181.23 gi|119872785|ref|YP_930792.1| - 0.046 12.8 13.2 0.44 9.6 8.4 2.6 1 1 1 2 2 2 0 Formin Homology 2 Domain Atg14 PF10186.9 gi|119872785|ref|YP_930792.1| - 0.049 12.7 22.5 0.39 9.8 11.2 2.2 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 HemX PF04375.14 gi|119872785|ref|YP_930792.1| - 0.054 12.8 27.1 0.62 9.3 16.5 2.6 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase Lyase_8_N PF08124.11 gi|119872785|ref|YP_930792.1| - 0.054 12.4 6.7 0.038 12.9 4.8 1.6 1 1 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain BioT2 PF15368.6 gi|119872785|ref|YP_930792.1| - 0.055 13.4 0.8 0.12 12.4 0.8 1.5 1 0 0 1 1 1 0 Spermatogenesis family BioT2 Rootletin PF15035.6 gi|119872785|ref|YP_930792.1| - 0.056 13.5 24.2 0.45 10.5 24.2 2.0 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion FUSC PF04632.12 gi|119872785|ref|YP_930792.1| - 0.056 12.0 22.6 0.094 11.2 22.6 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein family Sec34 PF04136.15 gi|119872785|ref|YP_930792.1| - 0.062 13.2 16.4 0.86 9.5 0.6 3.2 1 1 2 3 3 3 0 Sec34-like family HAP1_N PF04849.13 gi|119872785|ref|YP_930792.1| - 0.066 12.4 20.8 1.4 8.1 7.6 2.3 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Snapin_Pallidin PF14712.6 gi|119872785|ref|YP_930792.1| - 0.072 13.5 24.8 0.17 12.4 6.8 3.5 1 1 2 3 3 3 0 Snapin/Pallidin Imm7 PF15585.6 gi|119872785|ref|YP_930792.1| - 0.074 13.3 4.2 0.14 12.4 0.5 2.6 1 1 2 3 3 2 0 Immunity protein 7 Occludin_ELL PF07303.13 gi|119872785|ref|YP_930792.1| - 0.075 13.8 18.3 1.1 10.0 7.3 3.3 1 1 2 3 3 3 0 Occludin homology domain DASH_Dam1 PF08653.10 gi|119872785|ref|YP_930792.1| - 0.076 12.8 6.2 7.7 6.4 0.0 4.1 3 2 2 5 5 3 0 DASH complex subunit Dam1 SoxY PF13501.6 gi|119872785|ref|YP_930792.1| - 0.076 13.2 0.2 0.19 11.9 0.2 1.6 1 0 0 1 1 1 0 Sulfur oxidation protein SoxY AKNA PF12443.8 gi|119872785|ref|YP_930792.1| - 0.1 13.3 12.4 4.8 7.9 0.5 3.7 1 1 3 4 4 4 0 AT-hook-containing transcription factor MAP65_ASE1 PF03999.12 gi|119872785|ref|YP_930792.1| - 0.1 11.3 10.7 0.14 10.8 10.7 1.2 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) TMPIT PF07851.13 gi|119872785|ref|YP_930792.1| - 0.1 11.8 15.2 0.64 9.2 7.4 2.7 1 1 1 2 2 2 0 TMPIT-like protein OmpH PF03938.14 gi|119872785|ref|YP_930792.1| - 0.11 12.8 33.1 4.3 7.7 22.8 3.1 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) DUF2203 PF09969.9 gi|119872785|ref|YP_930792.1| - 0.11 13.2 16.1 0.22 12.2 1.4 2.8 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Med9 PF07544.13 gi|119872785|ref|YP_930792.1| - 0.11 12.6 16.3 3.8 7.7 7.5 3.2 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF745 PF05335.13 gi|119872785|ref|YP_930792.1| - 0.12 12.1 23.2 0.8 9.4 1.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) Rabaptin PF03528.15 gi|119872785|ref|YP_930792.1| - 0.13 11.0 17.2 0.15 10.7 3.4 2.4 1 1 0 2 2 2 0 Rabaptin Rax2 PF12768.7 gi|119872785|ref|YP_930792.1| - 0.14 11.6 0.5 0.51 9.8 0.1 2.0 1 1 2 3 3 1 0 Cortical protein marker for cell polarity She9_MDM33 PF05546.11 gi|119872785|ref|YP_930792.1| - 0.15 11.8 18.7 0.29 10.9 10.8 2.4 1 1 1 2 2 2 0 She9 / Mdm33 family DUF773 PF05600.12 gi|119872785|ref|YP_930792.1| - 0.15 10.7 19.9 0.74 8.5 12.1 2.1 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 PI_PP_I PF18363.1 gi|119872785|ref|YP_930792.1| - 0.19 11.9 4.6 8.8 6.6 0.8 2.5 1 1 1 2 2 2 0 Phosphoinositide phosphatase insertion domain MCPsignal PF00015.21 gi|119872785|ref|YP_930792.1| - 0.21 11.4 6.3 7.3 6.4 4.7 2.2 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Exonuc_VII_L PF02601.15 gi|119872785|ref|YP_930792.1| - 0.21 11.1 23.2 4.9 6.6 23.2 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit DUF4600 PF15372.6 gi|119872785|ref|YP_930792.1| - 0.22 11.9 19.9 4.5 7.7 16.8 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4600) Mod_r PF07200.13 gi|119872785|ref|YP_930792.1| - 0.22 11.6 28.5 14 5.8 4.4 3.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein APG17 PF04108.12 gi|119872785|ref|YP_930792.1| - 0.24 10.5 19.2 1.7 7.7 9.4 2.2 1 1 1 2 2 2 0 Autophagy protein Apg17 Cortex-I_coil PF09304.10 gi|119872785|ref|YP_930792.1| - 0.24 11.6 18.9 0.97 9.7 12.7 3.0 1 1 3 4 4 4 0 Cortexillin I, coiled coil COG5 PF10392.9 gi|119872785|ref|YP_930792.1| - 0.26 11.5 15.2 2.3 8.4 7.4 2.9 1 1 2 3 3 2 0 Golgi transport complex subunit 5 SKA1 PF07160.12 gi|119872785|ref|YP_930792.1| - 0.26 11.1 13.5 1.3 8.8 5.4 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Syntaxin_2 PF14523.6 gi|119872785|ref|YP_930792.1| - 0.29 11.5 16.7 1.4 9.4 13.5 2.8 1 1 1 2 2 2 0 Syntaxin-like protein PEARLI-4 PF05278.12 gi|119872785|ref|YP_930792.1| - 0.3 10.7 6.7 3.5 7.2 0.3 2.5 1 1 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF4315 PF14193.6 gi|119872785|ref|YP_930792.1| - 0.32 11.0 9.5 1.9 8.6 0.3 3.9 4 0 0 4 4 3 0 Domain of unknown function (DUF4315) CALCOCO1 PF07888.11 gi|119872785|ref|YP_930792.1| - 0.35 9.7 24.6 1.4 7.7 24.7 1.7 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like HAUS-augmin3 PF14932.6 gi|119872785|ref|YP_930792.1| - 0.35 10.4 30.4 0.16 11.6 9.2 3.1 1 1 2 3 3 3 0 HAUS augmin-like complex subunit 3 Fungal_TACC PF12709.7 gi|119872785|ref|YP_930792.1| - 0.35 11.3 12.6 1.3 9.5 0.2 3.5 3 1 1 4 4 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins FadA PF09403.10 gi|119872785|ref|YP_930792.1| - 0.36 11.3 20.7 0.65 10.5 0.1 3.5 2 1 1 3 3 2 0 Adhesion protein FadA CCDC144C PF14915.6 gi|119872785|ref|YP_930792.1| - 0.4 9.7 23.1 1.3 8.0 23.1 1.7 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Cluap1 PF10234.9 gi|119872785|ref|YP_930792.1| - 0.41 10.0 22.1 0.56 9.6 5.8 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 Ax_dynein_light PF10211.9 gi|119872785|ref|YP_930792.1| - 0.41 10.6 19.7 1.1 9.2 5.9 3.0 1 1 1 2 2 2 0 Axonemal dynein light chain SCO1-SenC PF02630.14 gi|119872785|ref|YP_930792.1| - 0.41 10.5 3.7 7.7 6.4 0.1 3.3 1 1 2 3 3 2 0 SCO1/SenC V_ATPase_I PF01496.19 gi|119872785|ref|YP_930792.1| - 0.41 8.5 13.4 1.2 7.0 6.3 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Cob_adeno_trans PF01923.18 gi|119872785|ref|YP_930792.1| - 0.46 10.6 10.3 1.9 8.6 8.0 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase CENP-F_N PF10481.9 gi|119872785|ref|YP_930792.1| - 0.49 10.0 14.9 0.75 9.4 14.9 1.2 1 0 0 1 1 1 0 Cenp-F N-terminal domain Csm1_N PF18504.1 gi|119872785|ref|YP_930792.1| - 0.5 10.7 22.7 2 8.8 2.8 4.2 1 1 2 3 3 3 0 Csm1 N-terminal domain DUF3138 PF11336.8 gi|119872785|ref|YP_930792.1| - 0.52 8.9 19.0 1.1 7.8 4.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3138) HALZ PF02183.18 gi|119872785|ref|YP_930792.1| - 0.57 10.4 29.1 0.58 10.4 2.9 5.8 2 1 4 6 6 4 0 Homeobox associated leucine zipper Cep57_CLD PF14073.6 gi|119872785|ref|YP_930792.1| - 0.57 10.2 23.6 0.082 12.9 14.9 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 FliJ PF02050.16 gi|119872785|ref|YP_930792.1| - 0.57 10.4 33.6 0.56 10.4 6.4 3.3 1 1 2 3 3 3 0 Flagellar FliJ protein DUF4988 PF16378.5 gi|119872785|ref|YP_930792.1| - 0.63 9.7 6.7 0.6 9.7 2.2 2.7 1 1 2 3 3 3 0 Domain of unknown function CHD5 PF04420.14 gi|119872785|ref|YP_930792.1| - 0.68 9.8 19.2 1.3 8.9 5.2 3.2 1 1 2 3 3 3 0 CHD5-like protein GldM_N PF12081.8 gi|119872785|ref|YP_930792.1| - 0.75 9.9 12.4 0.31 11.1 6.0 2.3 1 1 1 2 2 2 0 GldM N-terminal domain Bcr-Abl_Oligo PF09036.10 gi|119872785|ref|YP_930792.1| - 0.76 9.8 11.9 2.7 8.1 0.5 3.2 1 1 2 3 3 3 0 Bcr-Abl oncoprotein oligomerisation domain Uso1_p115_C PF04871.13 gi|119872785|ref|YP_930792.1| - 0.83 10.0 28.7 5 7.5 9.4 3.1 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region Med14 PF08638.11 gi|119872785|ref|YP_930792.1| - 0.86 9.0 10.2 50 3.2 10.1 2.5 1 1 0 1 1 1 0 Mediator complex subunit MED14 DUF2935 PF11155.8 gi|119872785|ref|YP_930792.1| - 0.92 9.8 3.5 14 6.0 2.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) MbeD_MobD PF04899.12 gi|119872785|ref|YP_930792.1| - 0.93 9.7 24.9 0.15 12.2 0.4 4.2 2 1 2 4 4 4 0 MbeD/MobD like YlqD PF11068.8 gi|119872785|ref|YP_930792.1| - 0.95 9.8 23.6 1.5 9.2 13.7 2.8 1 1 2 3 3 3 0 YlqD protein PRKG1_interact PF15898.5 gi|119872785|ref|YP_930792.1| - 0.96 10.4 26.2 2 9.4 13.0 3.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain AATF-Che1 PF13339.6 gi|119872785|ref|YP_930792.1| - 0.96 10.1 17.7 1.6e+03 -0.3 17.7 2.8 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor GrpE PF01025.19 gi|119872785|ref|YP_930792.1| - 1 9.0 24.4 3.4 7.3 3.1 3.8 1 1 1 2 2 1 0 GrpE Myb_DNA-bind_3 PF12776.7 gi|119872785|ref|YP_930792.1| - 1 10.4 6.3 3.6 8.6 0.3 3.6 1 1 4 5 5 3 0 Myb/SANT-like DNA-binding domain DMPK_coil PF08826.10 gi|119872785|ref|YP_930792.1| - 1 9.5 15.9 4.2 7.6 0.9 3.8 2 1 1 3 3 3 0 DMPK coiled coil domain like DUF3552 PF12072.8 gi|119872785|ref|YP_930792.1| - 1.1 8.6 23.2 1.5 8.2 8.3 2.7 1 1 1 2 2 1 0 Domain of unknown function (DUF3552) Noelin-1 PF12308.8 gi|119872785|ref|YP_930792.1| - 1.2 9.2 11.6 0.98 9.4 2.4 2.7 1 1 1 2 2 2 0 Neurogenesis glycoprotein HrpB7 PF09486.10 gi|119872785|ref|YP_930792.1| - 1.2 9.5 28.2 6.4 7.2 18.0 2.8 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) Scaffolding_pro PF11418.8 gi|119872785|ref|YP_930792.1| - 1.3 9.7 7.7 12 6.6 0.1 3.5 1 1 3 4 4 3 0 Phi29 scaffolding protein CREPT PF16566.5 gi|119872785|ref|YP_930792.1| - 1.3 9.2 17.6 6.3 7.0 8.8 2.4 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour LRRFIP PF09738.9 gi|119872785|ref|YP_930792.1| - 1.3 8.4 19.0 3.1 7.2 5.6 3.0 1 1 1 3 3 3 0 LRRFIP family HMMR_C PF15908.5 gi|119872785|ref|YP_930792.1| - 1.3 9.2 16.9 6.7 7.0 9.0 2.6 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal I_LWEQ PF01608.17 gi|119872785|ref|YP_930792.1| - 1.3 9.2 19.3 7.1 6.9 19.2 2.0 1 1 0 1 1 1 0 I/LWEQ domain GOLGA2L5 PF15070.6 gi|119872785|ref|YP_930792.1| - 1.3 7.5 22.0 0.94 8.1 13.7 2.2 1 1 1 2 2 2 0 Putative golgin subfamily A member 2-like protein 5 CorA PF01544.18 gi|119872785|ref|YP_930792.1| - 1.4 8.2 19.1 0.23 10.7 10.1 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein CP12 PF02672.15 gi|119872785|ref|YP_930792.1| - 1.4 9.7 7.7 0.22 12.3 0.5 2.6 3 0 0 3 3 2 0 CP12 domain Syntaxin PF00804.25 gi|119872785|ref|YP_930792.1| - 1.4 8.5 16.5 2.1 8.0 12.2 2.1 1 1 1 2 2 2 0 Syntaxin Swi5 PF07061.11 gi|119872785|ref|YP_930792.1| - 1.5 8.9 20.1 1.5 9.0 1.8 4.1 1 1 2 3 3 2 0 Swi5 FAM76 PF16046.5 gi|119872785|ref|YP_930792.1| - 1.6 8.0 16.2 1.2 8.4 7.5 2.2 1 1 2 3 3 3 0 FAM76 protein DUF948 PF06103.11 gi|119872785|ref|YP_930792.1| - 1.7 9.0 14.4 6.5 7.1 0.3 4.0 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) Tropomyosin PF00261.20 gi|119872785|ref|YP_930792.1| - 1.7 8.0 21.6 0.96 8.8 13.3 2.1 1 1 1 2 2 2 0 Tropomyosin Wtap PF17098.5 gi|119872785|ref|YP_930792.1| - 1.7 8.6 19.7 2.1 8.3 4.8 3.3 1 1 2 3 3 3 0 WTAP/Mum2p family LPP PF04728.13 gi|119872785|ref|YP_930792.1| - 1.7 9.1 22.5 0.079 13.4 2.8 4.1 1 1 2 3 3 2 0 Lipoprotein leucine-zipper Phage_lysozyme2 PF18013.1 gi|119872785|ref|YP_930792.1| - 1.7 8.6 8.3 95 3.0 8.3 2.4 1 1 0 1 1 1 0 Phage tail lysozyme LMBR1 PF04791.16 gi|119872785|ref|YP_930792.1| - 2.2 7.1 11.0 6.3 5.6 10.9 1.7 1 1 0 1 1 1 0 LMBR1-like membrane protein GIT_CC PF16559.5 gi|119872785|ref|YP_930792.1| - 2.3 8.1 23.6 0.45 10.4 0.6 4.0 2 1 1 4 4 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor Lectin_N PF03954.14 gi|119872785|ref|YP_930792.1| - 2.4 7.9 16.0 1.1 9.0 1.3 3.7 1 1 3 4 4 4 0 Hepatic lectin, N-terminal domain DASH_Dad2 PF08654.10 gi|119872785|ref|YP_930792.1| - 2.5 8.6 14.7 8.4 6.9 1.6 3.5 1 1 2 3 3 2 0 DASH complex subunit Dad2 Vps5 PF09325.10 gi|119872785|ref|YP_930792.1| - 2.8 7.4 18.9 1.2e+02 2.1 18.2 2.7 1 1 0 1 1 1 0 Vps5 C terminal like Muted PF14942.6 gi|119872785|ref|YP_930792.1| - 2.9 8.2 18.2 11 6.3 9.9 2.5 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein ApoO PF09769.9 gi|119872785|ref|YP_930792.1| - 3 7.8 9.5 5.6 6.9 0.5 3.6 1 1 3 4 4 4 0 Apolipoprotein O Rho_Binding PF08912.11 gi|119872785|ref|YP_930792.1| - 3.3 8.6 19.1 10 7.0 0.4 4.1 2 1 0 2 2 1 0 Rho Binding USP8_interact PF08941.10 gi|119872785|ref|YP_930792.1| - 3.5 7.4 16.9 6.5 6.5 0.5 3.2 1 1 2 3 3 3 0 USP8 interacting EMP24_GP25L PF01105.24 gi|119872785|ref|YP_930792.1| - 3.7 7.5 15.4 4.5 7.2 0.9 3.3 1 1 2 3 3 3 0 emp24/gp25L/p24 family/GOLD Ribosomal_L29 PF00831.23 gi|119872785|ref|YP_930792.1| - 3.8 7.6 19.1 2.1 8.4 1.4 4.3 2 1 2 4 4 4 0 Ribosomal L29 protein SKA2 PF16740.5 gi|119872785|ref|YP_930792.1| - 3.9 7.3 23.2 2.3 8.1 0.4 3.4 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 2 FmiP_Thoc5 PF09766.9 gi|119872785|ref|YP_930792.1| - 4.8 6.4 21.0 6.1 6.0 3.5 3.2 1 1 2 3 3 3 0 Fms-interacting protein/Thoc5 HalX PF08663.10 gi|119872785|ref|YP_930792.1| - 5.3 7.4 33.9 17 5.8 4.6 5.3 1 1 4 5 5 5 0 HalX domain DUF641 PF04859.12 gi|119872785|ref|YP_930792.1| - 5.4 7.4 16.0 3e+03 -1.5 14.5 2.9 1 1 0 1 1 0 0 Plant protein of unknown function (DUF641) Spc29 PF17082.5 gi|119872785|ref|YP_930792.1| - 5.7 6.7 12.4 20 4.9 2.6 2.7 1 1 1 2 2 2 0 Spindle Pole Component 29 AAA_27 PF13514.6 gi|119872785|ref|YP_930792.1| - 5.9 6.4 15.2 1.9 8.0 3.6 2.9 1 1 2 3 3 3 0 AAA domain BST2 PF16716.5 gi|119872785|ref|YP_930792.1| - 6.5 7.4 23.6 13 6.5 11.4 3.0 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 Nas2_N PF18265.1 gi|119872785|ref|YP_930792.1| - 6.6 6.7 10.5 4.3 7.3 1.0 3.7 2 1 2 4 4 4 0 Nas2 N_terminal domain DUF4164 PF13747.6 gi|119872785|ref|YP_930792.1| - 6.7 7.1 23.9 14 6.1 9.9 3.3 1 1 3 4 4 3 0 Domain of unknown function (DUF4164) DUF16 PF01519.16 gi|119872785|ref|YP_930792.1| - 7.2 7.2 13.6 1.1e+02 3.4 3.1 2.8 1 1 1 2 2 1 0 Protein of unknown function DUF16 MCC-bdg_PDZ PF10506.9 gi|119872785|ref|YP_930792.1| - 7.6 6.6 21.1 1.9 8.6 8.6 3.8 1 1 2 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome KELK PF15796.5 gi|119872785|ref|YP_930792.1| - 7.8 7.0 24.1 8.5 6.9 11.0 3.4 1 1 1 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Hemerythrin PF01814.23 gi|119872785|ref|YP_930792.1| - 8.9 6.9 7.8 23 5.6 2.6 2.9 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain Hrs_helical PF12210.8 gi|119872785|ref|YP_930792.1| - 10 6.8 19.1 1.6 9.3 9.8 2.9 1 1 2 3 3 3 0 Hepatocyte growth factor-regulated tyrosine kinase substrate ABC-3 PF00950.17 gi|119872786|ref|YP_930793.1| - 2.7e-15 56.6 22.3 3.9e-15 56.0 22.3 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|119872786|ref|YP_930793.1| - 2.4e-06 26.8 20.9 2.4e-06 26.8 20.9 1.8 1 1 0 2 2 2 1 FecCD transport family ABC_tran PF00005.27 gi|119872787|ref|YP_930794.1| - 6.9e-22 78.4 0.0 1e-21 77.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872787|ref|YP_930794.1| - 2.2e-08 34.3 1.5 0.003 17.4 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872787|ref|YP_930794.1| - 6.8e-06 25.7 0.0 0.014 14.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|119872787|ref|YP_930794.1| - 4.2e-05 24.2 0.0 6.3e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|119872787|ref|YP_930794.1| - 0.00043 19.9 0.0 0.00085 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119872787|ref|YP_930794.1| - 0.00077 19.9 0.0 0.0012 19.2 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|119872787|ref|YP_930794.1| - 0.0016 18.2 0.0 0.0033 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SSE PF00437.20 gi|119872787|ref|YP_930794.1| - 0.0019 17.3 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|119872787|ref|YP_930794.1| - 0.0061 16.7 0.2 0.072 13.2 0.1 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|119872787|ref|YP_930794.1| - 0.0089 15.8 0.0 2.3 7.9 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119872787|ref|YP_930794.1| - 0.0091 16.3 0.0 0.027 14.7 0.0 1.8 1 1 1 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|119872787|ref|YP_930794.1| - 0.024 14.5 0.4 0.046 13.6 0.1 1.6 2 0 0 2 2 2 0 NTPase AAA PF00004.29 gi|119872787|ref|YP_930794.1| - 0.081 13.4 0.5 0.22 12.0 0.5 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|119872787|ref|YP_930794.1| - 0.089 12.4 0.0 0.19 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Thioredoxin_13 PF18401.1 gi|119872787|ref|YP_930794.1| - 0.16 11.8 0.1 0.24 11.3 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain IF-2B PF01008.17 gi|119872788|ref|YP_930795.1| - 4.5e-09 35.9 0.1 1.9e-07 30.6 0.1 2.1 1 1 0 1 1 1 1 Initiation factor 2 subunit family HTH_Tnp_ISL3 PF13542.6 gi|119872788|ref|YP_930795.1| - 0.03 13.7 0.3 0.061 12.8 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 SWIM PF04434.17 gi|119872789|ref|YP_930796.1| - 8.9e-08 31.7 0.3 1.6e-07 30.8 0.3 1.5 1 0 0 1 1 1 1 SWIM zinc finger RimK PF08443.11 gi|119872790|ref|YP_930797.1| - 6.7e-38 130.2 0.0 8.5e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119872790|ref|YP_930797.1| - 2.3e-14 53.7 0.0 3.3e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|119872790|ref|YP_930797.1| - 2.6e-10 40.0 0.0 4e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|119872790|ref|YP_930797.1| - 3.7e-07 29.8 0.0 7.4e-06 25.6 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|119872790|ref|YP_930797.1| - 4e-07 29.6 0.0 0.002 17.5 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|119872790|ref|YP_930797.1| - 7.3e-06 25.7 0.0 0.00013 21.5 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|119872790|ref|YP_930797.1| - 0.0017 18.0 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain TTL PF03133.15 gi|119872790|ref|YP_930797.1| - 0.027 13.6 0.0 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Tubulin-tyrosine ligase family ATP-grasp_4 PF13535.6 gi|119872790|ref|YP_930797.1| - 0.05 13.2 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain PetG PF02529.15 gi|119872791|ref|YP_930798.1| - 1.9 8.4 6.4 0.55 10.1 3.2 1.8 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 DUF4282 PF14110.6 gi|119872792|ref|YP_930799.1| - 0.016 15.9 1.7 0.018 15.7 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF4190 PF13828.6 gi|119872792|ref|YP_930799.1| - 0.023 14.5 6.3 1 9.2 6.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4190) DUF308 PF03729.13 gi|119872792|ref|YP_930799.1| - 0.051 13.9 5.6 0.087 13.2 5.5 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) TMEM215 PF15746.5 gi|119872792|ref|YP_930799.1| - 0.42 10.0 1.7 0.45 9.9 1.7 1.0 1 0 0 1 1 1 0 TMEM215 family Ost4 PF10215.9 gi|119872792|ref|YP_930799.1| - 3 7.8 5.9 2.4 8.1 0.8 2.1 2 0 0 2 2 2 0 Oligosaccaryltransferase Phage_holin_2_3 PF16080.5 gi|119872792|ref|YP_930799.1| - 6.2 6.7 6.6 35 4.3 6.6 2.0 1 1 0 1 1 1 0 Bacteriophage holin family HP1 Acylphosphatase PF00708.18 gi|119872793|ref|YP_930800.1| - 1.2e-27 96.2 0.3 1.3e-27 96.0 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase DeoC PF01791.9 gi|119872794|ref|YP_930801.1| - 0.00095 18.8 0.2 0.0017 18.0 0.2 1.4 1 1 0 1 1 1 1 DeoC/LacD family aldolase HTH_45 PF14947.6 gi|119872795|ref|YP_930802.1| - 4e-07 29.9 0.0 5.3e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|119872795|ref|YP_930802.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF433 PF04255.14 gi|119872795|ref|YP_930802.1| - 0.0013 18.5 0.2 0.0022 17.8 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF433) MarR_2 PF12802.7 gi|119872795|ref|YP_930802.1| - 0.0031 17.4 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF4364 PF14277.6 gi|119872795|ref|YP_930802.1| - 0.056 13.2 0.0 0.068 12.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|119872795|ref|YP_930802.1| - 0.073 13.1 0.0 0.095 12.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Sigma70_r3 PF04539.16 gi|119872795|ref|YP_930802.1| - 0.084 13.0 0.3 0.12 12.5 0.3 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_12 PF08461.10 gi|119872795|ref|YP_930802.1| - 0.12 12.3 0.3 0.19 11.7 0.3 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|119872795|ref|YP_930802.1| - 0.13 12.8 0.0 0.26 11.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain PLDc_2 PF13091.6 gi|119872796|ref|YP_930803.1| - 2.1e-32 111.8 0.1 1.4e-23 83.2 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain Regulator_TrmB PF11495.8 gi|119872796|ref|YP_930803.1| - 0.00021 20.6 0.1 0.00035 19.8 0.1 1.4 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB PLDc PF00614.22 gi|119872796|ref|YP_930803.1| - 0.00095 19.3 5.5 0.042 14.0 0.3 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|119872796|ref|YP_930803.1| - 0.0016 18.0 0.3 0.0042 16.6 0.3 1.7 1 1 0 1 1 1 1 Polyphosphate kinase C-terminal domain 1 Pyr_redox PF00070.27 gi|119872796|ref|YP_930803.1| - 0.038 14.6 0.0 0.1 13.2 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DapH_N PF08503.10 gi|119872796|ref|YP_930803.1| - 0.072 13.3 1.3 0.29 11.4 0.7 2.3 1 1 1 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal Methyltransf_11 PF08241.12 gi|119872797|ref|YP_930804.1| - 5.3e-16 59.1 0.1 9.6e-16 58.2 0.0 1.4 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872797|ref|YP_930804.1| - 5.3e-14 52.7 0.0 8.2e-14 52.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872797|ref|YP_930804.1| - 1.6e-08 34.6 0.0 1.9e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872797|ref|YP_930804.1| - 5e-08 32.9 0.0 6e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872797|ref|YP_930804.1| - 7.1e-08 33.1 0.0 1.1e-07 32.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|119872797|ref|YP_930804.1| - 0.0005 19.9 0.0 0.00063 19.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|119872797|ref|YP_930804.1| - 0.00099 18.5 0.0 0.0011 18.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|119872797|ref|YP_930804.1| - 0.01 15.4 0.0 0.035 13.7 0.0 1.7 1 1 0 1 1 1 0 Methionine biosynthesis protein MetW UDPG_MGDP_dh_N PF03721.14 gi|119872797|ref|YP_930804.1| - 0.02 14.4 0.0 0.04 13.5 0.0 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UPF0146 PF03686.13 gi|119872797|ref|YP_930804.1| - 0.038 13.9 0.0 0.068 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) ApbA_C PF08546.11 gi|119872797|ref|YP_930804.1| - 0.063 13.5 0.0 0.12 12.5 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA C terminal RrnaAD PF00398.20 gi|119872797|ref|YP_930804.1| - 0.096 11.7 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|119872797|ref|YP_930804.1| - 0.17 11.8 0.1 0.34 10.9 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase domain CMAS PF02353.20 gi|119872797|ref|YP_930804.1| - 0.19 11.0 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0160 PF03690.13 gi|119872798|ref|YP_930805.1| - 5.9e-05 22.9 0.8 0.0052 16.5 0.4 2.2 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0160) ABC_tran PF00005.27 gi|119872799|ref|YP_930806.1| - 1.5e-33 116.2 0.0 2.2e-33 115.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872799|ref|YP_930806.1| - 3.1e-10 40.3 0.6 6.2e-05 23.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872799|ref|YP_930806.1| - 2.4e-05 23.9 0.0 3.6e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119872799|ref|YP_930806.1| - 0.00094 18.9 0.0 0.0021 17.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119872799|ref|YP_930806.1| - 0.0012 19.4 0.1 0.0037 17.8 0.0 1.8 1 1 1 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|119872799|ref|YP_930806.1| - 0.014 15.7 0.1 0.098 12.9 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|119872799|ref|YP_930806.1| - 0.016 15.6 0.1 0.048 14.0 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119872799|ref|YP_930806.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase TOBE_2 PF08402.10 gi|119872799|ref|YP_930806.1| - 0.018 15.2 0.0 0.052 13.7 0.0 1.9 2 0 0 2 2 1 0 TOBE domain AAA_33 PF13671.6 gi|119872799|ref|YP_930806.1| - 0.028 14.6 0.1 0.096 12.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|119872799|ref|YP_930806.1| - 0.029 13.2 0.0 0.042 12.7 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 gi|119872799|ref|YP_930806.1| - 0.049 13.3 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|119872799|ref|YP_930806.1| - 0.05 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|119872799|ref|YP_930806.1| - 0.061 13.7 0.3 1.4 9.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|119872799|ref|YP_930806.1| - 0.14 12.4 0.6 0.35 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119872799|ref|YP_930806.1| - 0.15 12.0 0.0 0.49 10.4 0.0 1.8 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|119872799|ref|YP_930806.1| - 0.19 11.7 0.3 0.52 10.2 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Rad17 PF03215.15 gi|119872799|ref|YP_930806.1| - 0.19 11.6 0.1 1 9.3 0.0 2.1 3 0 0 3 3 3 0 Rad17 P-loop domain Thiolase_N PF00108.23 gi|119872800|ref|YP_930807.1| - 1.3e-81 273.8 0.0 1.6e-81 273.5 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|119872800|ref|YP_930807.1| - 2e-39 134.0 0.0 6.9e-39 132.3 0.0 1.9 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|119872800|ref|YP_930807.1| - 4.1e-07 29.8 0.6 2.4e-06 27.3 0.2 2.1 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ADSL_C PF10397.9 gi|119872800|ref|YP_930807.1| - 0.064 13.8 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus ACP_syn_III PF08545.10 gi|119872800|ref|YP_930807.1| - 0.1 12.5 0.2 13 5.7 0.1 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NAD_synthase PF02540.17 gi|119872801|ref|YP_930808.1| - 7.7e-71 238.0 0.0 9.7e-71 237.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|119872801|ref|YP_930808.1| - 1.4e-08 33.9 0.0 9e-06 24.7 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|119872801|ref|YP_930808.1| - 0.0065 16.2 0.0 0.0076 16.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase DUF2007 PF09413.10 gi|119872801|ref|YP_930808.1| - 0.056 13.6 0.1 0.9 9.7 0.0 2.4 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein PAPS_reduct PF01507.19 gi|119872801|ref|YP_930808.1| - 0.12 12.4 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|119872801|ref|YP_930808.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC PadR PF03551.14 gi|119872802|ref|YP_930809.1| - 9.6e-21 73.5 1.2 3.4e-19 68.6 0.3 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|119872802|ref|YP_930809.1| - 8.9e-05 22.6 0.0 0.0002 21.4 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF3116 PF11313.8 gi|119872802|ref|YP_930809.1| - 0.0034 17.2 0.1 0.0077 16.1 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) DUF2513 PF10711.9 gi|119872802|ref|YP_930809.1| - 0.004 17.4 0.0 0.009 16.3 0.0 1.6 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) HTH_45 PF14947.6 gi|119872802|ref|YP_930809.1| - 0.0044 17.0 0.3 0.01 15.8 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix HxlR PF01638.17 gi|119872802|ref|YP_930809.1| - 0.049 13.5 0.1 0.099 12.5 0.1 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix Cdc6_C PF09079.11 gi|119872802|ref|YP_930809.1| - 0.069 13.1 0.2 0.92 9.5 0.0 2.6 3 0 0 3 3 3 0 CDC6, C terminal winged helix domain Replic_Relax PF13814.6 gi|119872802|ref|YP_930809.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation RNase_HII PF01351.18 gi|119872804|ref|YP_930811.1| - 5.5e-40 137.3 0.0 6.2e-40 137.2 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Peptidase_C16 PF01831.17 gi|119872804|ref|YP_930811.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase C16 family Ribosomal_S5 PF00333.20 gi|119872805|ref|YP_930812.1| - 3.4e-24 84.6 3.5 3.8e-24 84.5 1.9 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|119872805|ref|YP_930812.1| - 9.7e-23 79.4 0.1 1.9e-22 78.5 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Fer2_BFD PF04324.15 gi|119872805|ref|YP_930812.1| - 0.21 12.0 1.9 1.4 9.3 0.6 2.7 3 0 0 3 3 3 0 BFD-like [2Fe-2S] binding domain Ribosomal_L30 PF00327.20 gi|119872806|ref|YP_930813.1| - 6.2e-13 48.4 0.2 1e-12 47.7 0.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Peptidase_M50 PF02163.22 gi|119872807|ref|YP_930814.1| - 2.3e-07 30.4 13.6 1.5e-05 24.5 0.4 3.2 2 1 1 3 3 3 3 Peptidase family M50 DUF5592 PF17332.2 gi|119872807|ref|YP_930814.1| - 7.6 7.2 9.9 2.1 8.9 1.0 2.7 2 1 0 2 2 2 0 Family of unknown function (DUF5592) Peptidase_S9 PF00326.21 gi|119872809|ref|YP_930816.1| - 1.2e-38 132.7 0.0 1.8e-38 132.1 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|119872809|ref|YP_930816.1| - 7.3e-11 42.2 0.0 0.00041 20.1 0.0 2.5 2 1 0 3 3 3 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|119872809|ref|YP_930816.1| - 1e-08 34.8 0.0 0.00023 20.5 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|119872809|ref|YP_930816.1| - 1.9e-07 30.8 8.5 0.00011 22.0 0.0 4.9 7 0 0 7 7 7 2 WD40-like Beta Propeller Repeat Peptidase_S15 PF02129.18 gi|119872809|ref|YP_930816.1| - 8.2e-07 28.9 0.0 0.0021 17.7 0.1 2.6 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 gi|119872809|ref|YP_930816.1| - 1.3e-06 29.2 0.0 6.7e-05 23.6 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|119872809|ref|YP_930816.1| - 9.9e-05 22.2 0.0 0.035 13.9 0.0 2.8 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase BAAT_C PF08840.11 gi|119872809|ref|YP_930816.1| - 0.00061 19.8 0.1 0.0035 17.3 0.0 1.9 2 0 0 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal DLH PF01738.18 gi|119872809|ref|YP_930816.1| - 0.00092 18.8 0.0 0.0019 17.8 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family DUF2920 PF11144.8 gi|119872809|ref|YP_930816.1| - 0.002 17.4 0.0 0.41 9.8 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2920) Abhydrolase_3 PF07859.13 gi|119872809|ref|YP_930816.1| - 0.01 15.7 0.0 0.56 10.0 0.0 2.4 2 1 0 2 2 2 0 alpha/beta hydrolase fold LIP PF03583.14 gi|119872809|ref|YP_930816.1| - 0.019 14.3 0.0 1.2 8.4 0.0 2.3 2 0 0 2 2 2 0 Secretory lipase Abhydrolase_4 PF08386.10 gi|119872809|ref|YP_930816.1| - 0.13 12.4 0.0 0.33 11.1 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Spermine_synth PF01564.17 gi|119872811|ref|YP_930818.1| - 3.6e-47 160.2 0.1 5.5e-47 159.6 0.1 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|119872811|ref|YP_930818.1| - 8.2e-08 32.0 0.1 2.8e-07 30.3 0.1 1.9 2 0 0 2 2 2 1 Spermidine synthase tetramerisation domain Cons_hypoth95 PF03602.15 gi|119872811|ref|YP_930818.1| - 0.00012 21.8 0.0 0.00019 21.2 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|119872811|ref|YP_930818.1| - 0.00032 21.4 0.0 0.00065 20.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872811|ref|YP_930818.1| - 0.0011 19.6 0.1 0.0033 18.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|119872811|ref|YP_930818.1| - 0.048 13.2 0.0 0.095 12.2 0.0 1.4 2 0 0 2 2 2 0 MraW methylase family DUF43 PF01861.16 gi|119872811|ref|YP_930818.1| - 0.11 11.7 0.2 0.28 10.4 0.1 1.7 1 1 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain MTS PF05175.14 gi|119872811|ref|YP_930818.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain DFP PF04127.15 gi|119872812|ref|YP_930819.1| - 6.2e-50 169.6 0.0 2e-49 168.0 0.0 1.8 2 1 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|119872812|ref|YP_930819.1| - 2.7e-34 118.2 0.7 4.3e-34 117.6 0.7 1.3 1 0 0 1 1 1 1 Flavoprotein YjeF_N PF03853.15 gi|119872812|ref|YP_930819.1| - 0.002 18.1 0.1 0.58 10.0 0.0 2.8 2 1 1 3 3 3 2 YjeF-related protein N-terminus HisG PF01634.18 gi|119872812|ref|YP_930819.1| - 0.075 13.0 0.0 0.99 9.3 0.0 2.2 2 0 0 2 2 2 0 ATP phosphoribosyltransferase Glyco_trans_4_4 PF13579.6 gi|119872812|ref|YP_930819.1| - 0.13 12.7 1.5 1.8 9.0 0.1 3.0 2 2 1 3 3 3 0 Glycosyl transferase 4-like domain Rubrerythrin PF02915.17 gi|119872813|ref|YP_930820.1| - 8e-06 26.3 0.3 4.5e-05 23.9 0.1 2.2 1 1 1 2 2 2 1 Rubrerythrin HTH_3 PF01381.22 gi|119872813|ref|YP_930820.1| - 0.0058 16.7 0.3 0.041 13.9 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix Phenol_Hydrox PF02332.18 gi|119872813|ref|YP_930820.1| - 0.011 15.3 0.0 1.6 8.2 0.1 2.3 1 1 1 2 2 2 0 Methane/Phenol/Toluene Hydroxylase HTH_1 PF00126.27 gi|119872813|ref|YP_930820.1| - 0.059 13.3 0.0 0.27 11.2 0.0 2.2 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_19 PF12844.7 gi|119872813|ref|YP_930820.1| - 0.061 13.4 0.1 1.3 9.1 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|119872813|ref|YP_930820.1| - 0.065 13.1 0.0 0.27 11.1 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Mn_catalase PF05067.12 gi|119872813|ref|YP_930820.1| - 0.082 11.9 0.1 0.14 11.1 0.1 1.4 1 1 0 1 1 1 0 Manganese containing catalase YdaS_antitoxin PF15943.5 gi|119872813|ref|YP_930820.1| - 0.092 12.6 0.0 0.41 10.5 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF1138 PF06592.13 gi|119872814|ref|YP_930821.1| - 0.083 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1138) Glyco_hydro_77 PF02446.17 gi|119872815|ref|YP_930822.1| - 2.9e-141 471.5 0.0 3.6e-141 471.2 0.0 1.0 1 0 0 1 1 1 1 4-alpha-glucanotransferase FUSC-like PF12805.7 gi|119872816|ref|YP_930823.1| - 0.027 13.6 0.2 0.029 13.5 0.2 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS 2-Hacid_dh_C PF02826.19 gi|119872818|ref|YP_930825.1| - 1.1e-37 129.1 0.0 1.5e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|119872818|ref|YP_930825.1| - 1.3e-11 44.3 0.0 1.5e-11 44.1 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|119872818|ref|YP_930825.1| - 0.0004 20.5 0.1 0.0087 16.1 0.1 2.1 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|119872818|ref|YP_930825.1| - 0.0017 18.5 0.0 0.0038 17.4 0.0 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|119872818|ref|YP_930825.1| - 0.016 15.2 0.1 0.041 13.9 0.1 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|119872818|ref|YP_930825.1| - 0.019 14.2 0.0 0.57 9.4 0.0 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Oxidored_nitro PF00148.19 gi|119872818|ref|YP_930825.1| - 0.024 13.4 0.0 0.034 12.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase Shikimate_DH PF01488.20 gi|119872818|ref|YP_930825.1| - 0.028 14.5 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|119872818|ref|YP_930825.1| - 0.034 14.7 0.2 0.14 12.8 0.1 2.1 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ThiF PF00899.21 gi|119872818|ref|YP_930825.1| - 0.047 13.0 0.0 0.077 12.3 0.0 1.3 1 0 0 1 1 1 0 ThiF family 3HCDH_N PF02737.18 gi|119872818|ref|YP_930825.1| - 0.072 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|119872818|ref|YP_930825.1| - 0.082 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119872818|ref|YP_930825.1| - 0.096 13.3 0.0 0.81 10.3 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ABC2_membrane_3 PF12698.7 gi|119872820|ref|YP_930827.1| - 1.3e-16 60.6 10.7 2e-16 60.1 10.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119872820|ref|YP_930827.1| - 4e-09 36.2 23.8 2.5e-08 33.5 19.4 2.3 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|119872820|ref|YP_930827.1| - 1.6e-06 27.7 14.8 1.6e-06 27.7 14.8 2.4 2 1 1 3 3 3 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|119872820|ref|YP_930827.1| - 0.00019 21.4 14.0 0.00019 21.4 14.0 2.8 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|119872820|ref|YP_930827.1| - 0.004 16.7 18.9 0.0069 16.0 12.6 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein 60KD_IMP PF02096.20 gi|119872820|ref|YP_930827.1| - 0.022 14.6 3.2 0.067 13.1 3.2 1.8 1 0 0 1 1 1 0 60Kd inner membrane protein TauE PF01925.19 gi|119872820|ref|YP_930827.1| - 0.076 12.6 30.6 0.24 11.0 23.0 2.7 2 1 0 2 2 2 0 Sulfite exporter TauE/SafE ABC_tran PF00005.27 gi|119872821|ref|YP_930828.1| - 2.6e-23 83.0 0.0 3.5e-23 82.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872821|ref|YP_930828.1| - 1.3e-08 35.1 0.0 0.00039 20.3 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|119872821|ref|YP_930828.1| - 0.0013 19.2 0.1 0.002 18.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|119872821|ref|YP_930828.1| - 0.0029 17.4 0.1 0.0062 16.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.22 gi|119872821|ref|YP_930828.1| - 0.0045 16.6 0.2 0.009 15.7 0.2 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Rad17 PF03215.15 gi|119872821|ref|YP_930828.1| - 0.0068 16.4 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|119872821|ref|YP_930828.1| - 0.012 16.1 0.0 0.014 15.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|119872821|ref|YP_930828.1| - 0.022 14.3 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|119872821|ref|YP_930828.1| - 0.025 14.8 0.0 0.04 14.1 0.0 1.5 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|119872821|ref|YP_930828.1| - 0.04 13.4 0.1 4.7 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119872821|ref|YP_930828.1| - 0.043 14.1 0.0 0.066 13.5 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|119872821|ref|YP_930828.1| - 0.075 12.8 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|119872821|ref|YP_930828.1| - 0.078 13.4 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|119872821|ref|YP_930828.1| - 0.081 12.6 0.0 0.2 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119872821|ref|YP_930828.1| - 0.081 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 gi|119872821|ref|YP_930828.1| - 0.092 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain DUF3584 PF12128.8 gi|119872821|ref|YP_930828.1| - 0.19 9.2 0.2 0.25 8.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) VitK2_biosynth PF02621.14 gi|119872822|ref|YP_930829.1| - 7.9e-19 68.2 0.0 9.9e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis 3HCDH PF00725.22 gi|119872822|ref|YP_930829.1| - 0.0073 16.9 0.1 1.3 9.7 0.0 2.5 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HTH_23 PF13384.6 gi|119872822|ref|YP_930829.1| - 0.085 12.7 0.4 2.2 8.2 0.1 3.0 2 1 1 3 3 3 0 Homeodomain-like domain HTH_50 PF18024.1 gi|119872822|ref|YP_930829.1| - 0.16 11.6 0.2 9.6 5.9 0.1 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain Radical_SAM PF04055.21 gi|119872823|ref|YP_930830.1| - 1.6e-19 70.9 0.1 5.1e-19 69.2 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|119872823|ref|YP_930830.1| - 0.019 14.4 0.0 0.68 9.3 0.0 2.2 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|119872824|ref|YP_930831.1| - 2.7e-14 53.9 0.1 5.2e-14 53.0 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily HTH_28 PF13518.6 gi|119872824|ref|YP_930831.1| - 0.011 15.9 0.3 0.55 10.4 0.0 3.1 3 0 0 3 3 3 0 Helix-turn-helix domain CBS PF00571.28 gi|119872825|ref|YP_930832.1| - 1.1e-28 99.4 5.1 3.6e-14 52.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain Robl_LC7 PF03259.17 gi|119872825|ref|YP_930832.1| - 0.0064 16.2 0.2 0.023 14.5 0.0 1.9 2 1 0 2 2 2 1 Roadblock/LC7 domain NAD_kinase PF01513.21 gi|119872825|ref|YP_930832.1| - 0.07 12.3 0.1 0.099 11.8 0.1 1.3 1 1 0 1 1 1 0 ATP-NAD kinase IF3_N PF05198.16 gi|119872825|ref|YP_930832.1| - 0.12 12.7 1.1 3.5 8.0 0.1 2.8 3 1 1 4 4 4 0 Translation initiation factor IF-3, N-terminal domain Thiamine_BP PF01910.17 gi|119872826|ref|YP_930833.1| - 3.4e-25 87.8 0.1 3.7e-25 87.6 0.1 1.0 1 0 0 1 1 1 1 Thiamine-binding protein ATPase PF06745.13 gi|119872827|ref|YP_930834.1| - 1.5e-44 152.0 1.8 1.8e-42 145.3 1.8 2.2 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|119872827|ref|YP_930834.1| - 1.3e-07 31.2 0.1 4.6e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|119872827|ref|YP_930834.1| - 1e-06 28.4 0.0 3.5e-06 26.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|119872827|ref|YP_930834.1| - 5.5e-06 25.3 0.0 1.5e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein IstB_IS21 PF01695.17 gi|119872827|ref|YP_930834.1| - 9.8e-06 25.4 0.0 4.7e-05 23.2 0.0 2.0 2 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|119872827|ref|YP_930834.1| - 1.3e-05 24.7 0.1 0.00012 21.5 0.0 2.4 2 1 1 3 3 3 1 DnaB-like helicase C terminal domain RecA PF00154.21 gi|119872827|ref|YP_930834.1| - 1.8e-05 24.3 0.0 2.6e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein PAXNEB PF05625.11 gi|119872827|ref|YP_930834.1| - 0.00017 20.9 0.0 0.011 14.9 0.0 2.1 1 1 0 2 2 2 1 PAXNEB protein AAA_16 PF13191.6 gi|119872827|ref|YP_930834.1| - 0.00022 21.7 0.0 0.00046 20.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|119872827|ref|YP_930834.1| - 0.0019 17.5 0.0 0.0032 16.8 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DAP3 PF10236.9 gi|119872827|ref|YP_930834.1| - 0.0028 16.9 0.0 0.0053 16.0 0.0 1.5 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 AAA_22 PF13401.6 gi|119872827|ref|YP_930834.1| - 0.0042 17.4 0.1 0.022 15.0 0.0 2.1 3 0 0 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|119872827|ref|YP_930834.1| - 0.0047 16.7 0.1 0.099 12.4 0.1 2.7 1 1 1 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|119872827|ref|YP_930834.1| - 0.0067 16.5 0.0 0.019 15.1 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|119872827|ref|YP_930834.1| - 0.017 14.8 0.0 0.042 13.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.7 gi|119872827|ref|YP_930834.1| - 0.02 13.8 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_18 PF13238.6 gi|119872827|ref|YP_930834.1| - 0.024 15.2 0.0 0.13 12.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|119872827|ref|YP_930834.1| - 0.025 14.4 0.0 0.073 12.9 0.0 1.7 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain RNA_helicase PF00910.22 gi|119872827|ref|YP_930834.1| - 0.075 13.4 0.0 0.17 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|119872827|ref|YP_930834.1| - 0.079 13.0 0.0 0.53 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|119872827|ref|YP_930834.1| - 0.087 13.1 0.1 4.3 7.6 0.0 2.7 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|119872827|ref|YP_930834.1| - 0.14 12.1 0.2 0.4 10.6 0.1 1.9 2 1 0 2 2 1 0 NTPase AAA_14 PF13173.6 gi|119872827|ref|YP_930834.1| - 0.15 12.1 0.0 0.4 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|119872827|ref|YP_930834.1| - 0.15 12.5 0.0 0.25 11.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|119872827|ref|YP_930834.1| - 0.16 11.9 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain P22_Cro PF14549.6 gi|119872828|ref|YP_930835.1| - 0.029 14.2 0.0 0.047 13.5 0.0 1.2 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Sugar_tr PF00083.24 gi|119872830|ref|YP_930837.1| - 3.6e-26 92.1 28.7 6.5e-18 64.8 6.3 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|119872830|ref|YP_930837.1| - 1.9e-22 79.7 49.8 1.8e-16 60.0 22.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Radical_SAM PF04055.21 gi|119872831|ref|YP_930838.1| - 2.3e-13 50.9 0.0 4.6e-13 49.9 0.0 1.5 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119872831|ref|YP_930838.1| - 1.3e-06 28.8 0.0 2.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119872831|ref|YP_930838.1| - 3.1e-05 24.1 0.0 5e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain OrfB_Zn_ribbon PF07282.11 gi|119872832|ref|YP_930839.1| - 1.6e-10 40.7 0.1 6.9e-10 38.7 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872832|ref|YP_930839.1| - 0.0018 17.9 5.9 0.004 16.8 5.9 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119872832|ref|YP_930839.1| - 0.0036 17.0 1.2 0.0076 15.9 1.2 1.6 1 0 0 1 1 1 1 zinc-ribbon domain OrfB_IS605 PF01385.19 gi|119872832|ref|YP_930839.1| - 0.0041 17.3 2.6 0.0041 17.3 2.6 1.8 2 0 0 2 2 1 1 Probable transposase BLOC1_2 PF10046.9 gi|119872832|ref|YP_930839.1| - 0.016 15.5 0.4 0.25 11.7 0.1 2.5 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Auto_anti-p27 PF06677.12 gi|119872832|ref|YP_930839.1| - 0.021 15.0 2.7 0.038 14.1 2.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|119872832|ref|YP_930839.1| - 0.021 13.6 0.0 0.033 13.0 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ribbon_3 PF13248.6 gi|119872832|ref|YP_930839.1| - 0.024 14.0 3.4 0.2 11.1 3.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain FliH PF02108.16 gi|119872832|ref|YP_930839.1| - 0.025 14.6 0.2 0.061 13.4 0.2 1.6 1 0 0 1 1 1 0 Flagellar assembly protein FliH DZR PF12773.7 gi|119872832|ref|YP_930839.1| - 0.028 14.4 0.2 0.053 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|119872832|ref|YP_930839.1| - 0.042 13.8 0.4 0.071 13.0 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|119872832|ref|YP_930839.1| - 0.057 13.4 1.3 0.073 13.1 0.1 1.7 2 0 0 2 2 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_RNApol_7kD PF03604.13 gi|119872832|ref|YP_930839.1| - 0.067 12.9 3.3 0.14 11.8 3.3 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|119872832|ref|YP_930839.1| - 0.11 12.6 0.5 0.23 11.7 0.5 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|119872832|ref|YP_930839.1| - 0.15 11.6 1.6 0.4 10.2 1.6 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|119872832|ref|YP_930839.1| - 0.17 11.9 0.8 0.31 11.1 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.22 gi|119872832|ref|YP_930839.1| - 0.32 10.9 0.7 0.59 10.1 0.7 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4_Topoisom PF01396.19 gi|119872832|ref|YP_930839.1| - 0.62 9.9 6.9 0.25 11.1 1.0 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ACC PF17848.1 gi|119872832|ref|YP_930839.1| - 0.8 9.8 3.0 7.1 6.8 0.3 2.6 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|119872832|ref|YP_930839.1| - 1.1 9.5 4.0 6.7 6.9 4.0 2.2 1 1 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|119872832|ref|YP_930839.1| - 1.2 8.5 4.0 3.5 7.1 4.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-tcix PF14952.6 gi|119872832|ref|YP_930839.1| - 5.4 6.7 5.9 26 4.5 0.3 2.4 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding SOR_SNZ PF01680.17 gi|119872834|ref|YP_930841.1| - 5.7e-93 310.4 3.6 5.7e-93 310.4 3.6 1.3 2 0 0 2 2 2 1 SOR/SNZ family ThiG PF05690.14 gi|119872834|ref|YP_930841.1| - 3.5e-07 29.8 2.2 4.1e-06 26.3 0.2 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|119872834|ref|YP_930841.1| - 0.0011 18.2 1.1 0.2 10.7 0.0 2.8 3 0 0 3 3 3 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|119872834|ref|YP_930841.1| - 0.0024 17.4 0.7 0.27 10.7 0.1 3.0 2 1 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|119872834|ref|YP_930841.1| - 0.014 14.6 0.0 0.19 10.9 0.0 2.2 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|119872834|ref|YP_930841.1| - 0.027 14.1 0.4 0.26 10.9 0.0 2.4 2 1 1 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|119872834|ref|YP_930841.1| - 0.028 13.6 1.0 0.34 10.1 0.0 2.4 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PA PF02225.22 gi|119872834|ref|YP_930841.1| - 0.098 12.7 0.3 0.24 11.4 0.1 1.7 2 0 0 2 2 2 0 PA domain SNO PF01174.19 gi|119872835|ref|YP_930842.1| - 2.8e-50 170.8 0.0 3.1e-50 170.6 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_S51 PF03575.17 gi|119872835|ref|YP_930842.1| - 1.5e-10 41.1 0.0 1.8e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 GATase_3 PF07685.14 gi|119872835|ref|YP_930842.1| - 1.6e-09 37.7 0.1 2.1e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|119872835|ref|YP_930842.1| - 1.1e-06 28.6 0.3 1.1e-05 25.3 0.3 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|119872835|ref|YP_930842.1| - 0.013 15.3 0.1 0.025 14.4 0.1 1.4 1 1 0 1 1 1 0 DJ-1/PfpI family Thioredoxin_3 PF13192.6 gi|119872835|ref|YP_930842.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin domain BPL_N PF09825.9 gi|119872835|ref|YP_930842.1| - 0.068 12.2 0.0 1.1 8.2 0.0 2.0 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal MdcE PF06833.11 gi|119872835|ref|YP_930842.1| - 0.081 12.4 0.3 0.32 10.5 0.2 2.0 1 1 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) Nre_N PF04894.12 gi|119872836|ref|YP_930843.1| - 2.9e-96 322.4 0.0 3.8e-96 322.1 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|119872836|ref|YP_930843.1| - 4.1e-37 126.5 0.2 7e-37 125.7 0.2 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal Methyltransf_11 PF08241.12 gi|119872837|ref|YP_930844.1| - 2.2e-17 63.5 0.0 8.3e-17 61.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872837|ref|YP_930844.1| - 8.3e-13 48.9 0.0 1.7e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119872837|ref|YP_930844.1| - 1.6e-12 47.6 0.0 1.9e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872837|ref|YP_930844.1| - 2.5e-09 37.8 0.0 6.7e-09 36.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119872837|ref|YP_930844.1| - 3.1e-08 33.2 0.0 4.7e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|119872837|ref|YP_930844.1| - 1.4e-07 31.4 0.0 2.9e-07 30.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|119872837|ref|YP_930844.1| - 4.2e-06 26.5 0.0 5.7e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|119872837|ref|YP_930844.1| - 0.0091 14.6 0.0 0.011 14.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|119872837|ref|YP_930844.1| - 0.019 14.9 0.0 0.054 13.3 0.0 1.6 1 1 1 2 2 2 0 Hypothetical methyltransferase Methyltransf_2 PF00891.18 gi|119872837|ref|YP_930844.1| - 0.08 12.2 0.1 0.19 11.0 0.1 1.6 1 1 0 1 1 1 0 O-methyltransferase domain Glyco_transf_20 PF00982.21 gi|119872838|ref|YP_930845.1| - 6.3e-151 503.3 0.0 8.1e-151 502.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|119872838|ref|YP_930845.1| - 3.1e-58 196.6 0.0 4.7e-58 196.1 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|119872838|ref|YP_930845.1| - 1.2e-08 35.0 0.0 0.0011 18.8 0.0 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|119872838|ref|YP_930845.1| - 1.8e-05 24.4 0.0 0.00011 21.8 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Glycos_transf_1 PF00534.20 gi|119872838|ref|YP_930845.1| - 0.00045 19.8 0.0 0.0058 16.2 0.0 2.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872838|ref|YP_930845.1| - 0.00086 19.7 0.0 0.0021 18.5 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|119872838|ref|YP_930845.1| - 0.059 13.1 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|119872839|ref|YP_930846.1| - 6.3e-14 51.9 0.0 1.4e-13 50.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872839|ref|YP_930846.1| - 4.9e-10 40.0 0.0 2.9e-09 37.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|119872839|ref|YP_930846.1| - 4.6e-07 30.4 1.4 8e-07 29.6 0.4 1.9 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119872839|ref|YP_930846.1| - 8.5e-06 26.1 0.0 1.7e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872839|ref|YP_930846.1| - 0.00042 20.4 0.2 0.0037 17.3 0.0 2.5 2 1 1 3 3 3 1 Glycosyltransferase Family 4 tRNA_NucTransf2 PF09249.11 gi|119872839|ref|YP_930846.1| - 0.05 13.8 0.1 0.12 12.6 0.0 1.6 2 0 0 2 2 2 0 tRNA nucleotidyltransferase, second domain TM_helix PF05552.12 gi|119872840|ref|YP_930847.1| - 0.00089 19.2 2.5 0.00089 19.2 2.5 3.2 3 1 0 3 3 3 1 Conserved TM helix LUD_dom PF02589.15 gi|119872841|ref|YP_930848.1| - 4.3e-50 170.1 0.3 5.8e-50 169.6 0.3 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|119872841|ref|YP_930848.1| - 1.1e-09 38.6 0.9 2e-09 37.7 0.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872841|ref|YP_930848.1| - 6.7e-08 33.0 1.2 2.1e-07 31.4 1.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119872841|ref|YP_930848.1| - 1.5e-06 28.7 3.4 3e-06 27.7 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872841|ref|YP_930848.1| - 5.7e-06 26.4 6.3 3.2e-05 23.9 6.8 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|119872841|ref|YP_930848.1| - 0.00022 21.0 2.9 0.0017 18.1 0.2 2.5 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|119872841|ref|YP_930848.1| - 0.0006 19.8 7.2 0.0089 16.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119872841|ref|YP_930848.1| - 0.002 17.9 7.9 0.0083 15.9 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872841|ref|YP_930848.1| - 0.0048 17.0 6.0 0.27 11.4 7.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872841|ref|YP_930848.1| - 0.036 14.1 8.6 0.12 12.5 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|119872841|ref|YP_930848.1| - 0.041 14.1 2.7 0.18 12.0 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119872841|ref|YP_930848.1| - 0.059 13.5 5.2 0.4 10.8 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872841|ref|YP_930848.1| - 0.22 12.5 8.6 2.2 9.3 8.6 2.3 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|119872841|ref|YP_930848.1| - 0.23 12.3 6.3 2 9.3 0.4 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872841|ref|YP_930848.1| - 1.6 9.4 6.4 1.2 9.8 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Malate_synthase PF01274.22 gi|119872842|ref|YP_930849.1| - 1.5e-40 139.0 0.0 3.3e-36 124.7 0.0 2.2 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.14 gi|119872842|ref|YP_930849.1| - 0.0025 17.0 0.0 0.0046 16.1 0.0 1.4 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family FAD-oxidase_C PF02913.19 gi|119872843|ref|YP_930850.1| - 3.6e-43 148.0 0.0 5.4e-43 147.4 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|119872843|ref|YP_930850.1| - 1.1e-34 119.2 0.1 2.7e-34 117.9 0.2 1.6 2 0 0 2 2 2 1 FAD binding domain MMR_HSR1_Xtn PF16897.5 gi|119872843|ref|YP_930850.1| - 0.075 13.0 0.1 0.26 11.3 0.0 1.9 2 0 0 2 2 2 0 C-terminal region of MMR_HSR1 domain Fer4_8 PF13183.6 gi|119872844|ref|YP_930851.1| - 2.1e-13 50.5 4.1 2.6e-13 50.2 4.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872844|ref|YP_930851.1| - 6.2e-09 36.3 5.2 7.7e-09 36.0 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119872844|ref|YP_930851.1| - 1.6e-08 35.0 6.7 2.3e-08 34.5 6.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872844|ref|YP_930851.1| - 1.2e-07 31.8 18.9 1.5e-06 28.2 8.5 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119872844|ref|YP_930851.1| - 2.6e-07 30.2 13.3 0.00014 21.5 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872844|ref|YP_930851.1| - 5.1e-06 26.6 7.9 3.4e-05 23.9 8.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119872844|ref|YP_930851.1| - 4.5e-05 23.3 11.3 0.022 14.8 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|119872844|ref|YP_930851.1| - 7.7e-05 22.4 4.6 0.0073 16.1 0.4 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|119872844|ref|YP_930851.1| - 0.00025 21.3 10.2 0.003 17.9 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872844|ref|YP_930851.1| - 0.00048 20.2 4.7 0.18 11.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872844|ref|YP_930851.1| - 0.00094 19.1 11.4 0.066 13.3 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119872844|ref|YP_930851.1| - 0.0032 18.4 9.1 0.011 16.7 9.2 1.7 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|119872844|ref|YP_930851.1| - 0.0062 17.4 10.2 0.3 12.0 1.6 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain BTB_3 PF16017.5 gi|119872844|ref|YP_930851.1| - 0.086 12.9 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 BTB/POZ domain Fer4_18 PF13746.6 gi|119872844|ref|YP_930851.1| - 0.13 12.5 6.7 0.23 11.7 0.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119872844|ref|YP_930851.1| - 1.7 9.7 15.0 7 7.8 3.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|119872844|ref|YP_930851.1| - 2.4 8.7 9.2 12 6.6 0.3 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I CCG PF02754.16 gi|119872845|ref|YP_930852.1| - 2e-07 31.1 0.0 4.3e-05 23.6 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Lactate_perm PF02652.14 gi|119872846|ref|YP_930853.1| - 2.3e-100 336.8 45.0 3.4e-100 336.3 45.0 1.2 1 0 0 1 1 1 1 L-lactate permease LUD_dom PF02589.15 gi|119872847|ref|YP_930854.1| - 3.4e-47 160.6 0.1 4.8e-47 160.1 0.1 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|119872847|ref|YP_930854.1| - 1e-09 38.7 0.9 2.1e-09 37.7 0.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872847|ref|YP_930854.1| - 5.9e-08 33.1 0.9 1.5e-07 31.9 1.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119872847|ref|YP_930854.1| - 1.5e-06 28.6 3.4 3.1e-06 27.7 3.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119872847|ref|YP_930854.1| - 5.9e-06 26.3 6.8 6.4e-05 23.0 7.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|119872847|ref|YP_930854.1| - 6.5e-05 22.7 2.7 0.0013 18.5 0.2 2.9 3 0 0 3 3 3 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|119872847|ref|YP_930854.1| - 0.00063 19.7 7.2 0.009 16.1 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119872847|ref|YP_930854.1| - 0.0021 17.8 7.9 0.0084 15.9 0.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872847|ref|YP_930854.1| - 0.0065 16.6 6.5 0.39 10.9 8.2 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119872847|ref|YP_930854.1| - 0.029 14.5 2.2 0.17 12.1 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872847|ref|YP_930854.1| - 0.038 14.1 8.6 0.12 12.5 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119872847|ref|YP_930854.1| - 0.059 13.5 5.2 0.41 10.8 0.9 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872847|ref|YP_930854.1| - 0.19 12.7 8.3 1.9 9.5 8.3 2.3 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Apolipoprotein PF01442.18 gi|119872847|ref|YP_930854.1| - 0.45 10.4 2.1 1.3 8.9 2.1 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Fer4_22 PF17179.4 gi|119872847|ref|YP_930854.1| - 0.65 10.9 6.9 2.5 9.0 0.6 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872847|ref|YP_930854.1| - 1.6 9.4 6.4 1.3 9.7 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain COXG PF06240.13 gi|119872848|ref|YP_930855.1| - 3.6e-33 114.3 0.0 4e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|119872848|ref|YP_930855.1| - 4.7e-11 43.1 0.4 5.6e-11 42.9 0.4 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Ntox46 PF15538.6 gi|119872848|ref|YP_930855.1| - 0.033 14.2 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial toxin 46 Cyt_bd_oxida_I PF01654.17 gi|119872850|ref|YP_930857.1| - 4.4e-71 239.7 17.5 1.3e-69 234.9 17.5 2.0 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_I PF01654.17 gi|119872851|ref|YP_930858.1| - 2.2e-10 39.8 24.4 2.2e-10 39.8 24.4 2.1 1 1 1 2 2 2 1 Cytochrome bd terminal oxidase subunit I DUF2678 PF10856.8 gi|119872851|ref|YP_930858.1| - 2.8 7.9 8.5 0.1 12.5 1.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2678) 4HBT PF03061.22 gi|119872852|ref|YP_930859.1| - 1.4e-17 63.8 1.0 1.8e-17 63.4 1.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|119872852|ref|YP_930859.1| - 1.5e-05 25.4 0.1 1.9e-05 25.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Tricorn_PDZ PF14685.6 gi|119872852|ref|YP_930859.1| - 0.047 13.7 0.4 0.54 10.3 0.2 2.1 1 1 1 2 2 2 0 Tricorn protease PDZ domain DUF4442 PF14539.6 gi|119872852|ref|YP_930859.1| - 0.16 12.1 0.0 0.24 11.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4442) HMGL-like PF00682.19 gi|119872853|ref|YP_930860.1| - 1.6e-38 132.8 0.0 2.3e-38 132.3 0.0 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|119872853|ref|YP_930860.1| - 8.6e-27 93.6 0.0 1.5e-26 92.8 0.0 1.4 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain HTH_30 PF13556.6 gi|119872856|ref|YP_930863.1| - 0.093 12.5 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain UPF0175 PF03683.13 gi|119872856|ref|YP_930863.1| - 0.095 12.4 0.1 0.23 11.2 0.0 1.8 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0175) Ins_beta PF03488.14 gi|119872858|ref|YP_930865.1| - 0.13 12.2 0.0 15 5.6 0.0 2.2 2 0 0 2 2 2 0 Nematode insulin-related peptide beta type PPS_PS PF02006.16 gi|119872859|ref|YP_930866.1| - 1.8e-76 255.6 1.8 2.2e-76 255.3 1.8 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Radical_SAM PF04055.21 gi|119872859|ref|YP_930866.1| - 0.02 15.3 0.3 0.45 10.9 0.4 2.1 1 1 1 2 2 2 0 Radical SAM superfamily DUF2205 PF10224.9 gi|119872859|ref|YP_930866.1| - 0.056 13.4 0.1 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 Short coiled-coil protein RTT107_BRCT_6 PF16771.5 gi|119872859|ref|YP_930866.1| - 0.12 12.6 0.0 0.26 11.5 0.0 1.5 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain Pantoate_transf PF02548.15 gi|119872860|ref|YP_930867.1| - 1.1e-108 362.5 0.1 1.3e-108 362.3 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|119872860|ref|YP_930867.1| - 1.1e-09 38.2 0.5 6.7e-09 35.5 0.5 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Peptidase_U32 PF01136.19 gi|119872860|ref|YP_930867.1| - 0.062 12.4 0.9 2 7.5 0.0 2.8 2 1 1 3 3 3 0 Peptidase family U32 ApbA_C PF08546.11 gi|119872861|ref|YP_930868.1| - 7.8e-35 119.8 0.1 1.2e-34 119.2 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|119872861|ref|YP_930868.1| - 3.2e-12 46.3 0.0 1.4e-11 44.3 0.0 2.1 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA GHMP_kinases_N PF00288.26 gi|119872862|ref|YP_930869.1| - 0.067 13.4 0.8 0.13 12.5 0.8 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain NapD PF03927.13 gi|119872862|ref|YP_930869.1| - 0.11 12.6 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 NapD protein DUF2070 PF09843.9 gi|119872863|ref|YP_930870.1| - 0.27 9.5 3.9 0.32 9.2 3.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_holin_3_6 PF07332.11 gi|119872863|ref|YP_930870.1| - 4.1 7.5 18.9 8.7 6.4 18.9 1.5 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III TssN PF17555.2 gi|119872863|ref|YP_930870.1| - 7.5 5.9 5.8 2.5 7.4 3.4 1.4 1 1 0 1 1 1 0 Type VI secretion system, TssN Oxidored_molyb PF00174.19 gi|119872864|ref|YP_930871.1| - 1.8e-20 73.2 0.0 2.3e-20 72.9 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain CbiZ PF01955.18 gi|119872865|ref|YP_930872.1| - 1.4e-14 54.6 6.8 1.3e-13 51.5 6.8 2.2 1 1 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.13 gi|119872865|ref|YP_930872.1| - 0.00034 20.7 0.0 0.0006 19.9 0.0 1.5 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A Aminotran_1_2 PF00155.21 gi|119872867|ref|YP_930874.1| - 8.6e-17 61.3 0.0 1.2e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II CobS PF02654.15 gi|119872868|ref|YP_930875.1| - 3.6e-35 122.0 14.2 4.1e-35 121.8 14.2 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|119872869|ref|YP_930876.1| - 5e-48 163.7 6.5 6.9e-48 163.2 6.5 1.2 1 0 0 1 1 1 1 CobD/Cbib protein CobA_CobO_BtuR PF02572.15 gi|119872870|ref|YP_930877.1| - 4e-32 111.8 0.2 2.1e-30 106.3 0.2 2.0 1 1 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Glyco_trans_4_4 PF13579.6 gi|119872870|ref|YP_930877.1| - 0.004 17.6 0.1 0.0049 17.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain AAA_31 PF13614.6 gi|119872870|ref|YP_930877.1| - 0.07 13.0 1.6 4.1 7.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|119872870|ref|YP_930877.1| - 0.19 11.8 2.2 3 7.9 0.7 2.4 3 0 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain HCV_core PF01542.18 gi|119872870|ref|YP_930877.1| - 0.27 11.6 0.8 1.1 9.8 0.2 2.0 2 0 0 2 2 2 0 Hepatitis C virus core protein NTP_transf_3 PF12804.7 gi|119872871|ref|YP_930878.1| - 3.4e-14 53.5 2.3 8.8e-14 52.2 1.6 2.0 1 1 0 1 1 1 1 MobA-like NTP transferase domain ParBc PF02195.18 gi|119872871|ref|YP_930878.1| - 0.00025 21.3 0.0 0.00046 20.4 0.0 1.4 1 0 0 1 1 1 1 ParB-like nuclease domain NTP_transferase PF00483.23 gi|119872871|ref|YP_930878.1| - 0.0055 16.3 0.0 0.0098 15.5 0.0 1.4 1 1 0 1 1 1 1 Nucleotidyl transferase DUF1015 PF06245.11 gi|119872871|ref|YP_930878.1| - 0.072 11.9 0.5 7.9 5.2 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1015) MtrB PF05440.12 gi|119872871|ref|YP_930878.1| - 0.19 12.1 0.0 0.56 10.7 0.0 1.7 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B MAPEG PF01124.18 gi|119872873|ref|YP_930880.1| - 0.068 13.1 0.1 0.13 12.2 0.1 1.5 1 0 0 1 1 1 0 MAPEG family AAA_14 PF13173.6 gi|119872874|ref|YP_930881.1| - 4.9e-19 68.7 0.0 8e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|119872874|ref|YP_930881.1| - 3.5e-06 27.2 0.0 5.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|119872874|ref|YP_930881.1| - 0.0035 17.3 0.1 0.046 13.6 0.0 2.7 2 2 2 4 4 4 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|119872874|ref|YP_930881.1| - 0.05 14.0 0.0 3 8.2 0.0 2.4 1 1 1 2 2 2 0 AAA ATPase domain HTH_AsnC-type PF13404.6 gi|119872874|ref|YP_930881.1| - 0.07 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain NUMOD1 PF07453.13 gi|119872874|ref|YP_930881.1| - 0.07 13.4 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain CLP1_P PF16575.5 gi|119872874|ref|YP_930881.1| - 0.094 12.5 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA PF00004.29 gi|119872874|ref|YP_930881.1| - 0.16 12.4 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) HEPN PF05168.14 gi|119872875|ref|YP_930882.1| - 1e-10 41.7 0.0 1.2e-10 41.5 0.0 1.0 1 0 0 1 1 1 1 HEPN domain SRP68 PF16969.5 gi|119872875|ref|YP_930882.1| - 0.29 10.1 0.0 0.35 9.8 0.0 1.0 1 0 0 1 1 1 0 RNA-binding signal recognition particle 68 PaREP1 PF05942.11 gi|119872876|ref|YP_930883.1| - 1.1e-19 70.4 1.1 1.4e-19 70.1 1.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Focal_AT PF03623.13 gi|119872876|ref|YP_930883.1| - 0.2 11.7 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Focal adhesion targeting region Asp_decarbox PF02261.16 gi|119872877|ref|YP_930884.1| - 2.4e-32 111.3 0.0 2.7e-32 111.1 0.0 1.1 1 0 0 1 1 1 1 Aspartate decarboxylase OrfB_Zn_ribbon PF07282.11 gi|119872878|ref|YP_930885.1| - 3.7e-10 39.6 0.0 8.8e-10 38.4 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872878|ref|YP_930885.1| - 0.0016 18.1 6.4 0.0034 17.0 6.4 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|119872878|ref|YP_930885.1| - 0.027 14.5 0.2 0.1 12.6 0.1 2.0 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|119872878|ref|YP_930885.1| - 0.035 14.3 2.2 0.075 13.2 2.2 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) NRDD PF13597.6 gi|119872878|ref|YP_930885.1| - 0.038 12.8 0.0 0.055 12.2 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.7 gi|119872878|ref|YP_930885.1| - 0.042 13.9 0.2 0.081 13.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon FliH PF02108.16 gi|119872878|ref|YP_930885.1| - 0.046 13.8 0.7 0.2 11.7 0.4 2.2 3 1 0 3 3 2 0 Flagellar assembly protein FliH Prok-RING_1 PF14446.6 gi|119872878|ref|YP_930885.1| - 0.062 13.2 0.5 0.11 12.4 0.5 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Anti-TRAP PF15777.5 gi|119872878|ref|YP_930885.1| - 0.13 12.3 0.3 0.29 11.1 0.3 1.6 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc-ribbons_6 PF07191.12 gi|119872878|ref|YP_930885.1| - 0.13 12.2 0.7 0.22 11.5 0.7 1.3 1 0 0 1 1 1 0 zinc-ribbons Cys_rich_CPCC PF14206.6 gi|119872878|ref|YP_930885.1| - 0.18 11.6 0.1 0.32 10.8 0.1 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC TackOD1 PF18551.1 gi|119872878|ref|YP_930885.1| - 0.23 11.1 0.2 0.41 10.3 0.2 1.3 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DNA_RNApol_7kD PF03604.13 gi|119872878|ref|YP_930885.1| - 0.25 11.0 2.2 0.56 9.9 2.2 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.9 gi|119872878|ref|YP_930885.1| - 0.28 11.3 3.2 1.3 9.2 3.2 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.6 gi|119872878|ref|YP_930885.1| - 0.53 11.0 4.1 7 7.4 3.9 2.6 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.6 gi|119872878|ref|YP_930885.1| - 1.3 8.5 7.0 0.53 9.8 3.4 2.1 2 1 1 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119872878|ref|YP_930885.1| - 2.1 8.2 4.5 1.7 8.5 0.3 2.2 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Fer4 PF00037.27 gi|119872881|ref|YP_930888.1| - 4.2e-21 73.8 42.7 6.5e-06 25.8 4.4 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119872881|ref|YP_930888.1| - 4.7e-21 75.1 28.5 2.4e-09 37.7 11.3 3.7 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119872881|ref|YP_930888.1| - 9.3e-17 60.9 27.3 2.9e-11 43.3 9.6 3.6 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|119872881|ref|YP_930888.1| - 1.1e-15 56.9 43.6 0.0002 21.3 2.6 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119872881|ref|YP_930888.1| - 4.6e-15 55.5 34.2 1.1e-07 31.9 9.9 3.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119872881|ref|YP_930888.1| - 9.4e-14 52.1 29.2 0.0023 18.8 0.7 4.6 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|119872881|ref|YP_930888.1| - 7.2e-13 48.4 54.9 5.6e-08 32.8 11.1 4.3 3 2 3 6 6 5 5 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119872881|ref|YP_930888.1| - 3.9e-11 42.3 46.8 0.00079 19.4 3.2 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119872881|ref|YP_930888.1| - 9.6e-11 42.0 34.5 0.0006 20.2 0.3 4.9 3 2 1 4 4 4 4 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119872881|ref|YP_930888.1| - 1.5e-09 38.1 21.5 2.5e-07 30.9 2.6 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119872881|ref|YP_930888.1| - 1.1e-08 35.4 35.1 0.021 15.4 1.0 5.5 4 3 1 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119872881|ref|YP_930888.1| - 3e-07 30.4 45.4 0.012 16.1 2.3 5.6 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119872881|ref|YP_930888.1| - 0.00042 21.0 26.2 0.026 15.3 1.2 4.8 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119872881|ref|YP_930888.1| - 0.0015 19.0 40.8 0.024 15.2 1.6 4.8 4 1 1 5 5 4 4 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|119872881|ref|YP_930888.1| - 0.0018 18.4 6.7 0.0077 16.4 0.4 2.3 2 0 0 2 2 2 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|119872881|ref|YP_930888.1| - 0.0026 18.6 6.0 0.0026 18.6 6.0 5.4 7 0 0 7 7 4 3 4Fe-4S binding domain BIR PF00653.21 gi|119872881|ref|YP_930888.1| - 0.17 12.6 0.0 0.17 12.6 0.0 3.2 3 2 1 5 5 2 0 Inhibitor of Apoptosis domain DUF2321 PF10083.9 gi|119872881|ref|YP_930888.1| - 0.23 11.1 3.3 0.29 10.8 1.8 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Fer4_22 PF17179.4 gi|119872881|ref|YP_930888.1| - 1.1 10.2 34.8 5.1 8.0 1.6 4.6 2 2 1 4 4 4 0 4Fe-4S dicluster domain TctB PF07331.11 gi|119872883|ref|YP_930890.1| - 0.00061 20.1 2.1 0.00061 20.1 2.1 2.1 1 1 1 2 2 2 1 Tripartite tricarboxylate transporter TctB family Phage_holin_4_2 PF04020.13 gi|119872883|ref|YP_930890.1| - 0.0038 17.9 11.9 0.015 16.0 11.1 1.9 1 1 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV Yip1 PF04893.17 gi|119872883|ref|YP_930890.1| - 0.02 14.6 20.2 0.031 14.0 20.2 1.4 1 1 0 1 1 1 0 Yip1 domain LapA_dom PF06305.11 gi|119872883|ref|YP_930890.1| - 0.33 10.8 0.1 0.33 10.8 0.1 3.3 2 1 1 3 3 3 0 Lipopolysaccharide assembly protein A domain Gly-zipper_Omp PF13488.6 gi|119872883|ref|YP_930890.1| - 0.61 10.1 5.9 0.15 12.1 1.9 2.0 2 1 0 2 2 2 0 Glycine zipper DUF973 PF06157.11 gi|119872884|ref|YP_930891.1| - 2.8e-19 69.3 29.0 3.1e-19 69.2 29.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|119872884|ref|YP_930891.1| - 0.038 14.3 41.5 0.37 11.1 15.3 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF996) OrfB_Zn_ribbon PF07282.11 gi|119872886|ref|YP_930893.1| - 1.6e-11 43.9 0.0 4.8e-11 42.4 0.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119872886|ref|YP_930893.1| - 0.0045 16.9 0.5 0.0079 16.1 0.5 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|119872886|ref|YP_930893.1| - 0.011 15.4 6.0 0.011 15.4 6.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119872886|ref|YP_930893.1| - 0.013 15.2 0.8 0.032 13.9 0.8 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872886|ref|YP_930893.1| - 0.016 14.6 2.4 0.056 12.9 2.4 1.9 1 1 0 1 1 1 0 zinc-ribbon domain RNHCP PF12647.7 gi|119872886|ref|YP_930893.1| - 0.037 14.0 0.2 0.068 13.1 0.2 1.4 1 0 0 1 1 1 0 RNHCP domain DZR PF12773.7 gi|119872886|ref|YP_930893.1| - 0.038 14.0 0.2 0.067 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon FliH PF02108.16 gi|119872886|ref|YP_930893.1| - 0.047 13.8 1.0 0.56 10.3 0.5 2.6 2 1 0 2 2 2 0 Flagellar assembly protein FliH C1_1 PF00130.22 gi|119872886|ref|YP_930893.1| - 0.047 13.6 0.2 0.087 12.7 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-Mss51 PF13824.6 gi|119872886|ref|YP_930893.1| - 0.087 12.9 0.4 0.22 11.6 0.4 1.7 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.19 gi|119872886|ref|YP_930893.1| - 0.096 12.7 0.2 0.23 11.5 0.1 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|119872886|ref|YP_930893.1| - 0.19 11.9 1.5 0.33 11.1 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.12 gi|119872886|ref|YP_930893.1| - 0.22 11.5 0.3 0.4 10.7 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons DNA_ligase_ZBD PF03119.16 gi|119872886|ref|YP_930893.1| - 1.8 8.7 4.0 9.1 6.4 0.4 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Methyltransf_23 PF13489.6 gi|119872887|ref|YP_930894.1| - 7.5e-09 35.6 0.0 9.4e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119872887|ref|YP_930894.1| - 1.1e-08 35.6 0.0 2e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119872887|ref|YP_930894.1| - 3.2e-07 31.0 0.0 5.6e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872887|ref|YP_930894.1| - 4.2e-06 27.4 0.0 8.2e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|119872887|ref|YP_930894.1| - 4e-05 23.5 0.0 7.3e-05 22.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|119872887|ref|YP_930894.1| - 0.027 13.8 0.0 0.039 13.3 0.0 1.4 1 1 0 1 1 1 0 ubiE/COQ5 methyltransferase family SUI1 PF01253.22 gi|119872887|ref|YP_930894.1| - 0.14 12.7 0.0 0.7 10.5 0.0 1.9 2 0 0 2 2 2 0 Translation initiation factor SUI1 NTPase_I-T PF01931.18 gi|119872888|ref|YP_930895.1| - 1.4e-44 151.8 0.1 1.5e-44 151.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Methyltransf_11 PF08241.12 gi|119872889|ref|YP_930896.1| - 2.9e-09 37.5 0.1 4.4e-09 36.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119872889|ref|YP_930896.1| - 0.00015 22.4 0.0 0.00026 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Peptidase_M20 PF01546.28 gi|119872890|ref|YP_930897.1| - 9e-26 90.9 0.0 1.9e-25 89.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|119872890|ref|YP_930897.1| - 8.2e-11 41.8 0.0 1.4e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|119872890|ref|YP_930897.1| - 7.2e-05 22.6 0.0 9.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 DUF5063 PF16702.5 gi|119872890|ref|YP_930897.1| - 0.12 12.8 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) HTH_20 PF12840.7 gi|119872891|ref|YP_930898.1| - 0.00081 19.4 0.3 0.002 18.1 0.3 1.7 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_42 PF06224.12 gi|119872891|ref|YP_930898.1| - 0.00086 18.9 0.4 0.0009 18.9 0.4 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|119872891|ref|YP_930898.1| - 0.0056 16.6 0.4 0.0087 15.9 0.4 1.3 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|119872891|ref|YP_930898.1| - 0.009 16.1 0.0 0.012 15.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|119872891|ref|YP_930898.1| - 0.015 15.3 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Plasmid_stab_B PF10784.9 gi|119872891|ref|YP_930898.1| - 0.026 14.4 0.4 2.3 8.1 0.0 2.3 1 1 1 2 2 2 0 Plasmid stability protein Sulf_coat_C PF12193.8 gi|119872891|ref|YP_930898.1| - 0.026 14.6 0.0 0.032 14.3 0.0 1.1 1 0 0 1 1 1 0 Sulfolobus virus coat protein C terminal Sigma70_r4_2 PF08281.12 gi|119872891|ref|YP_930898.1| - 0.029 14.0 0.8 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 Stk19 PF10494.9 gi|119872891|ref|YP_930898.1| - 0.056 13.1 0.0 0.056 13.1 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 Sigma70_r4 PF04545.16 gi|119872891|ref|YP_930898.1| - 0.079 12.5 0.9 0.24 11.0 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 Cupin_2 PF07883.11 gi|119872892|ref|YP_930899.1| - 5.2e-15 54.9 0.2 7.2e-15 54.5 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|119872892|ref|YP_930899.1| - 2.3e-09 37.3 0.0 3.6e-09 36.7 0.0 1.3 1 1 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|119872892|ref|YP_930899.1| - 4.1e-05 23.2 0.2 6.6e-05 22.6 0.2 1.3 1 1 0 1 1 1 1 Cupin Cupin_3 PF05899.12 gi|119872892|ref|YP_930899.1| - 8.4e-05 22.2 0.3 0.00011 21.8 0.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF861) ARD PF03079.14 gi|119872892|ref|YP_930899.1| - 0.00054 20.2 0.1 0.00067 19.9 0.1 1.2 1 0 0 1 1 1 1 ARD/ARD' family Cupin_7 PF12973.7 gi|119872892|ref|YP_930899.1| - 0.00059 19.7 0.0 0.00077 19.3 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain CENP-C_C PF11699.8 gi|119872892|ref|YP_930899.1| - 0.0017 18.5 0.0 0.0021 18.2 0.0 1.3 1 0 0 1 1 1 1 Mif2/CENP-C like KduI PF04962.12 gi|119872892|ref|YP_930899.1| - 0.0018 17.6 0.0 0.0023 17.3 0.0 1.2 1 0 0 1 1 1 1 KduI/IolB family Cupin_4 PF08007.12 gi|119872892|ref|YP_930899.1| - 0.0019 17.7 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 Cupin superfamily protein EutQ PF06249.12 gi|119872892|ref|YP_930899.1| - 0.0058 16.4 0.0 0.0072 16.1 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ DMSP_lyase PF16867.5 gi|119872892|ref|YP_930899.1| - 0.0083 15.8 0.0 0.01 15.5 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase DUF4863 PF16155.5 gi|119872892|ref|YP_930899.1| - 0.05 13.4 0.0 0.053 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) PCO_ADO PF07847.12 gi|119872892|ref|YP_930899.1| - 0.094 12.2 0.0 0.3 10.5 0.1 1.7 1 1 1 2 2 2 0 PCO_ADO MannoseP_isomer PF01050.18 gi|119872892|ref|YP_930899.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase JmjC PF02373.22 gi|119872892|ref|YP_930899.1| - 0.15 12.5 0.0 0.16 12.4 0.0 1.2 1 0 0 1 1 1 0 JmjC domain, hydroxylase Peptidase_S49 PF01343.18 gi|119872893|ref|YP_930900.1| - 6e-16 58.8 1.7 4.7e-08 33.1 0.9 2.4 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|119872893|ref|YP_930900.1| - 2.9e-10 40.3 0.1 2.4e-07 30.8 0.1 2.3 2 0 0 2 2 2 2 Clp protease ECH_1 PF00378.20 gi|119872893|ref|YP_930900.1| - 0.13 11.6 0.4 0.35 10.2 0.0 1.8 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase Rax2 PF12768.7 gi|119872893|ref|YP_930900.1| - 0.49 9.8 2.1 0.52 9.7 0.9 1.6 2 0 0 2 2 2 0 Cortical protein marker for cell polarity DHHA1 PF02272.19 gi|119872894|ref|YP_930901.1| - 5.1e-13 49.6 0.0 9.9e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|119872894|ref|YP_930901.1| - 1.4e-06 28.5 0.0 2.3e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 DHH family DUF1326 PF07040.11 gi|119872894|ref|YP_930901.1| - 0.068 13.2 0.1 0.13 12.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1326) ABC_tran PF00005.27 gi|119872895|ref|YP_930902.1| - 9.7e-32 110.3 0.0 1.2e-31 110.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119872895|ref|YP_930902.1| - 1.2e-07 31.9 1.1 0.0098 15.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119872895|ref|YP_930902.1| - 0.00021 20.8 0.1 0.12 11.8 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119872895|ref|YP_930902.1| - 0.00025 20.7 0.0 0.00047 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119872895|ref|YP_930902.1| - 0.0083 16.6 0.0 0.013 16.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119872895|ref|YP_930902.1| - 0.012 15.5 0.1 0.023 14.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|119872895|ref|YP_930902.1| - 0.035 13.8 0.0 0.27 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|119872895|ref|YP_930902.1| - 0.047 13.3 0.1 0.69 9.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|119872895|ref|YP_930902.1| - 0.096 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|119872895|ref|YP_930902.1| - 0.096 12.9 0.1 2.1 8.6 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|119872895|ref|YP_930902.1| - 0.17 12.5 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119872895|ref|YP_930902.1| - 0.18 12.1 1.9 0.33 11.2 0.5 1.9 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|119872896|ref|YP_930903.1| - 5.5e-18 65.2 0.0 3.5e-13 49.4 0.0 3.1 2 1 0 2 2 2 2 KaiC AAA_22 PF13401.6 gi|119872896|ref|YP_930903.1| - 4.2e-12 46.5 0.0 5.5e-06 26.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.6 gi|119872896|ref|YP_930903.1| - 1.3e-10 41.2 2.6 4e-05 23.3 0.3 3.0 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|119872896|ref|YP_930903.1| - 4.4e-08 33.6 0.0 0.003 18.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|119872896|ref|YP_930903.1| - 3e-07 30.4 0.1 0.00071 19.3 0.1 3.0 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|119872896|ref|YP_930903.1| - 3.4e-07 30.8 0.3 0.0068 16.8 0.1 2.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|119872896|ref|YP_930903.1| - 7.1e-06 25.9 0.5 0.016 14.9 0.1 2.6 2 0 0 2 2 2 2 AAA domain RecA PF00154.21 gi|119872896|ref|YP_930903.1| - 1.1e-05 25.0 0.0 0.0033 16.9 0.0 3.0 2 1 1 3 3 3 1 recA bacterial DNA recombination protein AAA_33 PF13671.6 gi|119872896|ref|YP_930903.1| - 2.8e-05 24.3 0.0 0.16 12.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|119872896|ref|YP_930903.1| - 7e-05 22.9 0.0 0.13 12.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|119872896|ref|YP_930903.1| - 8.7e-05 22.3 0.4 0.029 14.1 0.2 2.4 2 0 0 2 2 2 1 IstB-like ATP binding protein NTPase_1 PF03266.15 gi|119872896|ref|YP_930903.1| - 0.00015 21.7 0.1 0.045 13.6 0.0 2.6 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 gi|119872896|ref|YP_930903.1| - 0.00022 21.2 0.1 0.78 9.6 0.0 2.4 2 0 0 2 2 2 2 NACHT domain cobW PF02492.19 gi|119872896|ref|YP_930903.1| - 0.0003 20.4 0.0 0.41 10.2 0.0 2.4 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|119872896|ref|YP_930903.1| - 0.00035 20.6 0.1 0.57 10.0 0.0 2.6 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|119872896|ref|YP_930903.1| - 0.00039 20.4 0.0 0.18 11.8 0.1 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|119872896|ref|YP_930903.1| - 0.00041 20.1 0.2 0.53 10.0 0.0 3.2 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_11 PF13086.6 gi|119872896|ref|YP_930903.1| - 0.0009 19.1 0.0 0.41 10.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|119872896|ref|YP_930903.1| - 0.00097 19.7 0.0 0.018 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|119872896|ref|YP_930903.1| - 0.0014 18.4 0.3 0.19 11.5 0.0 2.8 3 0 0 3 3 2 1 P-loop containing region of AAA domain AAA_18 PF13238.6 gi|119872896|ref|YP_930903.1| - 0.0015 19.1 0.3 1.1 9.8 0.1 3.1 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|119872896|ref|YP_930903.1| - 0.0015 19.0 0.0 1.4 9.5 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_19 PF13245.6 gi|119872896|ref|YP_930903.1| - 0.0017 18.7 3.1 0.34 11.2 0.2 2.8 3 0 0 3 3 2 1 AAA domain DUF2075 PF09848.9 gi|119872896|ref|YP_930903.1| - 0.0019 17.5 0.0 0.39 9.9 0.1 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) GvpD PF07088.11 gi|119872896|ref|YP_930903.1| - 0.0028 16.4 0.2 6.6 5.2 0.0 3.0 3 0 0 3 3 3 0 GvpD gas vesicle protein Mg_chelatase PF01078.21 gi|119872896|ref|YP_930903.1| - 0.0028 17.0 0.2 0.92 8.9 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI NB-ARC PF00931.22 gi|119872896|ref|YP_930903.1| - 0.0029 16.8 0.0 0.74 8.9 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain DnaB_C PF03796.15 gi|119872896|ref|YP_930903.1| - 0.0039 16.6 0.0 0.046 13.0 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain PhoH PF02562.16 gi|119872896|ref|YP_930903.1| - 0.0043 16.5 0.2 0.94 8.9 0.1 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_28 PF13521.6 gi|119872896|ref|YP_930903.1| - 0.0043 17.3 0.0 1.7 8.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain TsaE PF02367.17 gi|119872896|ref|YP_930903.1| - 0.0044 17.0 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE KdpD PF02702.17 gi|119872896|ref|YP_930903.1| - 0.0088 15.5 0.2 0.31 10.5 0.0 2.3 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain AAA_17 PF13207.6 gi|119872896|ref|YP_930903.1| - 0.011 16.2 0.6 4.4 7.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|119872896|ref|YP_930903.1| - 0.014 15.8 0.1 2.7 8.4 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_7 PF12775.7 gi|119872896|ref|YP_930903.1| - 0.015 14.8 0.0 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|119872896|ref|YP_930903.1| - 0.019 14.3 0.0 1.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.14 gi|119872896|ref|YP_930903.1| - 0.025 14.5 0.0 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Ploopntkinase3 PF18751.1 gi|119872896|ref|YP_930903.1| - 0.03 14.2 0.0 2.1 8.3 0.0 2.2 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 Roc PF08477.13 gi|119872896|ref|YP_930903.1| - 0.042 14.1 0.0 6.6 7.0 0.0 2.3 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase ResIII PF04851.15 gi|119872896|ref|YP_930903.1| - 0.044 13.8 0.3 0.31 11.0 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit ATP_bind_1 PF03029.17 gi|119872896|ref|YP_930903.1| - 0.049 13.4 0.1 11 5.7 0.0 2.2 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|119872896|ref|YP_930903.1| - 0.086 12.5 0.0 17 5.0 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.9 gi|119872896|ref|YP_930903.1| - 0.22 10.4 0.2 2.4 7.0 0.0 2.7 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain T2SSF PF00482.23 gi|119872897|ref|YP_930904.1| - 2.7e-17 62.9 6.1 2.7e-17 62.9 6.1 2.5 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|119872898|ref|YP_930905.1| - 6e-50 169.8 0.0 1.1e-49 168.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|119872898|ref|YP_930905.1| - 5e-07 30.3 0.0 9.8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_23 PF13476.6 gi|119872898|ref|YP_930905.1| - 4.2e-05 24.2 0.1 8.9e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119872898|ref|YP_930905.1| - 4.5e-05 23.1 0.0 0.00011 21.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|119872898|ref|YP_930905.1| - 0.0003 20.7 0.0 0.00052 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|119872898|ref|YP_930905.1| - 0.00055 20.2 0.0 0.0027 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|119872898|ref|YP_930905.1| - 0.00093 18.8 0.0 0.002 17.8 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|119872898|ref|YP_930905.1| - 0.0011 19.3 0.0 0.0031 17.9 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain MMR_HSR1 PF01926.23 gi|119872898|ref|YP_930905.1| - 0.0016 18.5 0.0 0.005 16.9 0.0 1.9 2 0 0 2 2 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|119872898|ref|YP_930905.1| - 0.002 18.0 0.0 0.004 17.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_28 PF13521.6 gi|119872898|ref|YP_930905.1| - 0.003 17.8 0.1 0.0081 16.4 0.0 1.8 2 0 0 2 2 1 1 AAA domain GTP_EFTU PF00009.27 gi|119872898|ref|YP_930905.1| - 0.0049 16.4 0.0 0.0094 15.5 0.0 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_7 PF12775.7 gi|119872898|ref|YP_930905.1| - 0.0073 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|119872898|ref|YP_930905.1| - 0.015 14.6 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|119872898|ref|YP_930905.1| - 0.023 14.4 0.0 0.047 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|119872898|ref|YP_930905.1| - 0.024 14.4 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|119872898|ref|YP_930905.1| - 0.026 15.1 0.0 0.059 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|119872898|ref|YP_930905.1| - 0.033 13.6 0.0 0.057 12.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|119872898|ref|YP_930905.1| - 0.035 14.1 0.0 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Dynamin_N PF00350.23 gi|119872898|ref|YP_930905.1| - 0.039 14.0 0.0 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 Dynamin family Guanylate_kin PF00625.21 gi|119872898|ref|YP_930905.1| - 0.04 13.6 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 Guanylate kinase TrwB_AAD_bind PF10412.9 gi|119872898|ref|YP_930905.1| - 0.041 12.8 0.0 0.068 12.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Zeta_toxin PF06414.12 gi|119872898|ref|YP_930905.1| - 0.046 13.0 0.1 0.63 9.3 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin AAA_30 PF13604.6 gi|119872898|ref|YP_930905.1| - 0.059 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119872898|ref|YP_930905.1| - 0.067 13.1 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|119872898|ref|YP_930905.1| - 0.067 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 DEAD/DEAH box helicase SMC_N PF02463.19 gi|119872898|ref|YP_930905.1| - 0.094 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|119872898|ref|YP_930905.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|119872898|ref|YP_930905.1| - 0.11 12.7 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_33 PF13671.6 gi|119872898|ref|YP_930905.1| - 0.12 12.5 0.0 0.34 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|119872898|ref|YP_930905.1| - 0.15 11.3 0.0 0.23 10.7 0.0 1.2 1 0 0 1 1 1 0 Septin PduV-EutP PF10662.9 gi|119872898|ref|YP_930905.1| - 0.21 11.3 0.0 0.47 10.2 0.0 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ResIII PF04851.15 gi|119872898|ref|YP_930905.1| - 0.23 11.5 0.0 0.42 10.6 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_15 PF13175.6 gi|119872898|ref|YP_930905.1| - 0.26 11.0 0.0 0.39 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SASP PF00269.20 gi|119872898|ref|YP_930905.1| - 0.84 9.7 2.6 0.9 9.6 1.1 1.9 2 0 0 2 2 1 0 Small, acid-soluble spore proteins, alpha/beta type T2SSF PF00482.23 gi|119872899|ref|YP_930906.1| - 1.8e-13 50.6 3.0 1.8e-13 50.6 3.0 2.1 1 1 1 2 2 2 1 Type II secretion system (T2SS), protein F Sbt_1 PF05982.12 gi|119872899|ref|YP_930906.1| - 0.00067 19.0 1.8 0.0011 18.3 1.8 1.3 1 0 0 1 1 1 1 Na+-dependent bicarbonate transporter superfamily DUF973 PF06157.11 gi|119872900|ref|YP_930907.1| - 3.8e-05 22.9 2.7 4.7e-05 22.6 2.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Pilin_N PF07790.11 gi|119872900|ref|YP_930907.1| - 0.00033 21.5 0.9 0.00033 21.5 0.9 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal SP_C-Propep PF08999.10 gi|119872900|ref|YP_930907.1| - 0.021 14.6 0.6 0.034 13.9 0.6 1.3 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide PilA4 PF18682.1 gi|119872900|ref|YP_930907.1| - 0.026 14.9 1.9 0.057 13.8 1.9 1.6 1 0 0 1 1 1 0 Pilin A4 GPI-anchored PF10342.9 gi|119872900|ref|YP_930907.1| - 0.028 15.2 0.6 0.05 14.4 0.6 1.6 1 1 0 1 1 1 0 Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family LapA_dom PF06305.11 gi|119872900|ref|YP_930907.1| - 0.053 13.3 0.3 0.081 12.8 0.3 1.3 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Chordopox_A13L PF05961.11 gi|119872900|ref|YP_930907.1| - 0.13 12.5 0.1 0.22 11.8 0.1 1.4 1 0 0 1 1 1 0 Chordopoxvirus A13L protein DUF2749 PF10907.8 gi|119872900|ref|YP_930907.1| - 0.22 11.7 0.7 0.61 10.3 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Pilin_N PF07790.11 gi|119872901|ref|YP_930908.1| - 0.12 13.3 4.3 0.16 12.9 4.3 1.3 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal EF-hand_5 PF13202.6 gi|119872902|ref|YP_930909.1| - 0.081 12.5 3.1 1 9.0 0.2 2.3 2 0 0 2 2 2 0 EF hand DUF1646 PF07854.12 gi|119872904|ref|YP_930911.1| - 1.9e-119 399.1 18.0 2.3e-119 398.9 18.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) PsbT PF01405.17 gi|119872904|ref|YP_930911.1| - 2.9 7.8 10.5 4.6 7.1 1.0 3.3 2 0 0 2 2 2 0 Photosystem II reaction centre T protein Rep_1 PF01446.17 gi|119872905|ref|YP_930912.1| - 0.028 13.9 0.1 0.031 13.8 0.1 1.0 1 0 0 1 1 1 0 Replication protein SWC7 PF17330.2 gi|119872905|ref|YP_930912.1| - 0.064 13.3 0.1 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 SWR1 chromatin-remodelling complex, sub-unit Swc7 Trypsin_2 PF13365.6 gi|119872906|ref|YP_930913.1| - 2.2e-21 77.3 1.6 4e-21 76.5 1.6 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|119872906|ref|YP_930913.1| - 5.9e-11 42.5 0.0 1.1e-10 41.7 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_6 PF17820.1 gi|119872906|ref|YP_930913.1| - 4.8e-08 32.7 0.0 1.4e-07 31.3 0.0 1.8 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|119872906|ref|YP_930913.1| - 1.2e-07 31.8 0.1 7.2e-07 29.2 0.0 2.1 1 1 1 2 2 2 1 Trypsin PDZ PF00595.24 gi|119872906|ref|YP_930913.1| - 2.5e-05 24.5 0.0 5.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 PDZ domain Peptidase_S29 PF02907.15 gi|119872906|ref|YP_930913.1| - 0.042 13.6 0.2 0.18 11.5 0.1 2.0 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease OrfB_Zn_ribbon PF07282.11 gi|119872908|ref|YP_930915.1| - 4.9e-11 42.4 0.0 9.1e-11 41.5 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119872908|ref|YP_930915.1| - 0.00011 22.1 0.5 0.00016 21.5 0.5 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|119872908|ref|YP_930915.1| - 0.0025 17.5 0.8 0.0047 16.6 0.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119872908|ref|YP_930915.1| - 0.0034 17.0 4.5 0.0073 15.9 4.5 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|119872908|ref|YP_930915.1| - 0.006 16.6 0.3 0.0099 15.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|119872908|ref|YP_930915.1| - 0.024 14.7 1.1 0.056 13.5 1.1 1.7 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FeoB_Cyto PF17910.1 gi|119872908|ref|YP_930915.1| - 0.032 14.8 1.9 0.12 13.0 0.5 2.3 2 0 0 2 2 2 0 FeoB cytosolic helical domain TF_Zn_Ribbon PF08271.12 gi|119872908|ref|YP_930915.1| - 0.042 13.4 0.5 0.73 9.4 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding NRDD PF13597.6 gi|119872908|ref|YP_930915.1| - 0.047 12.5 0.0 0.07 11.9 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zinc-ribbons_6 PF07191.12 gi|119872908|ref|YP_930915.1| - 0.07 13.1 0.8 0.11 12.5 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons Aminotran_5 PF00266.19 gi|119872908|ref|YP_930915.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V DNA_RNApol_7kD PF03604.13 gi|119872908|ref|YP_930915.1| - 0.38 10.5 3.5 0.97 9.2 3.5 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|119872908|ref|YP_930915.1| - 0.39 10.2 5.0 2.3 7.7 4.8 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|119872908|ref|YP_930915.1| - 0.51 10.2 2.1 4.3 7.2 0.3 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|119872908|ref|YP_930915.1| - 0.56 10.4 3.5 1.6 8.9 3.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|119872908|ref|YP_930915.1| - 0.9 8.9 4.2 2.5 7.5 4.2 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger HicA_toxin PF07927.12 gi|119872909|ref|YP_930916.1| - 0.11 12.6 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Big_3_5 PF16640.5 gi|119872911|ref|YP_930918.1| - 0.11 12.7 3.6 0.33 11.1 0.1 2.4 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 3) Linocin_M18 PF04454.12 gi|119872912|ref|YP_930919.1| - 4.3e-25 88.5 0.0 6.5e-25 87.9 0.0 1.3 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|119872912|ref|YP_930919.1| - 1.2e-08 35.4 0.2 2.5e-08 34.4 0.2 1.5 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|119872912|ref|YP_930919.1| - 0.0064 16.4 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|119872912|ref|YP_930919.1| - 0.019 15.3 0.0 0.046 14.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Phos_pyr_kin PF08543.12 gi|119872913|ref|YP_930920.1| - 1.2e-90 303.2 0.2 1.9e-90 302.6 0.2 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|119872913|ref|YP_930920.1| - 1.1e-60 204.0 1.1 2e-60 203.2 0.3 1.8 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|119872913|ref|YP_930920.1| - 2.1e-13 50.3 0.2 3.2e-13 49.7 0.2 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase 5-FTHF_cyc-lig PF01812.20 gi|119872914|ref|YP_930921.1| - 7.8e-33 113.9 0.0 9.3e-33 113.6 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family DUF2204 PF09970.9 gi|119872916|ref|YP_930923.1| - 0.0013 18.5 0.0 0.0019 17.8 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) GP63 PF17471.2 gi|119872917|ref|YP_930924.1| - 0.17 12.1 0.0 0.24 11.6 0.0 1.2 1 0 0 1 1 1 0 Gene product 63 MarR PF01047.22 gi|119872919|ref|YP_930926.1| - 4.9e-06 26.4 0.0 9.1e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|119872919|ref|YP_930926.1| - 0.00013 22.0 0.0 0.00023 21.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119872919|ref|YP_930926.1| - 0.00015 21.6 0.0 0.00026 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|119872919|ref|YP_930926.1| - 0.0027 17.6 0.2 0.0037 17.1 0.2 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|119872919|ref|YP_930926.1| - 0.029 14.2 0.2 0.057 13.3 0.0 1.5 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.16 gi|119872919|ref|YP_930926.1| - 0.092 13.1 0.1 0.11 12.9 0.1 1.2 1 0 0 1 1 1 0 Penicillinase repressor HEPN PF05168.14 gi|119872921|ref|YP_930928.1| - 0.034 14.3 0.0 0.041 14.0 0.0 1.1 1 0 0 1 1 1 0 HEPN domain NUDIX PF00293.28 gi|119872922|ref|YP_930929.1| - 8.9e-16 58.1 0.5 4.2e-15 55.9 0.1 2.1 1 1 2 3 3 3 1 NUDIX domain PaREP1 PF05942.11 gi|119872923|ref|YP_930930.1| - 3.1e-31 107.7 0.9 3.1e-31 107.7 0.9 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family T2SSF PF00482.23 gi|119872923|ref|YP_930930.1| - 0.35 10.8 0.1 0.35 10.8 0.1 2.2 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein F MS_channel PF00924.18 gi|119872924|ref|YP_930931.1| - 2.8e-19 69.5 0.5 2.8e-19 69.5 0.5 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Peptidase_M42 PF05343.14 gi|119872925|ref|YP_930932.1| - 6.9e-104 346.9 0.0 8e-104 346.7 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|119872925|ref|YP_930932.1| - 8.7e-11 41.9 0.1 1.3e-10 41.3 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|119872925|ref|YP_930932.1| - 1.5e-05 24.8 0.0 0.00094 18.9 0.0 2.5 2 1 0 2 2 2 1 Peptidase family M28 SNase PF00565.17 gi|119872926|ref|YP_930933.1| - 0.0008 19.9 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue ECH_1 PF00378.20 gi|119872927|ref|YP_930934.1| - 6.2e-67 225.5 0.0 8.4e-67 225.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|119872927|ref|YP_930934.1| - 8.3e-66 221.3 1.5 1.4e-65 220.5 1.5 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|119872927|ref|YP_930934.1| - 6.7e-51 170.9 0.2 1.2e-24 86.7 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|119872927|ref|YP_930934.1| - 1.2e-35 123.7 0.0 8.5e-35 120.8 0.0 2.3 2 1 0 2 2 2 1 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|119872927|ref|YP_930934.1| - 5.8e-05 23.3 0.2 0.00012 22.3 0.2 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|119872927|ref|YP_930934.1| - 0.001 19.6 0.1 0.0042 17.6 0.1 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|119872927|ref|YP_930934.1| - 0.0018 17.6 0.1 0.0046 16.2 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119872927|ref|YP_930934.1| - 0.0026 18.3 1.5 0.026 15.1 0.1 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase adh_short_C2 PF13561.6 gi|119872927|ref|YP_930934.1| - 0.015 14.9 0.3 0.095 12.2 0.0 2.2 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase UDPG_MGDP_dh_N PF03721.14 gi|119872927|ref|YP_930934.1| - 0.027 14.1 0.0 0.076 12.6 0.0 1.8 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|119872927|ref|YP_930934.1| - 0.03 14.3 0.8 0.11 12.5 0.2 2.1 1 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|119872927|ref|YP_930934.1| - 0.048 14.2 0.2 0.42 11.1 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain CbiA PF01656.23 gi|119872927|ref|YP_930934.1| - 0.07 13.2 0.1 0.29 11.2 0.0 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain TrkA_N PF02254.18 gi|119872927|ref|YP_930934.1| - 0.08 13.2 0.1 0.56 10.5 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|119872927|ref|YP_930934.1| - 0.11 12.8 0.1 0.27 11.5 0.1 1.7 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|119872927|ref|YP_930934.1| - 0.12 11.7 0.1 0.38 10.1 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|119872927|ref|YP_930934.1| - 0.26 10.7 0.1 0.26 10.7 0.1 2.0 3 0 0 3 3 3 0 short chain dehydrogenase AMP-binding PF00501.28 gi|119872928|ref|YP_930935.1| - 1e-109 367.0 0.1 1.2e-109 366.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|119872928|ref|YP_930935.1| - 4.5e-21 75.6 1.3 4.5e-21 75.6 1.3 2.1 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|119872929|ref|YP_930936.1| - 2.7e-44 151.0 2.9 2.7e-44 151.0 2.9 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|119872929|ref|YP_930936.1| - 1e-36 126.0 1.3 2.1e-36 125.0 0.1 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|119872929|ref|YP_930936.1| - 1.2e-27 95.9 0.0 2.1e-27 95.1 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|119872929|ref|YP_930936.1| - 2.9e-22 79.4 0.9 5e-22 78.6 0.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Thiolase_N PF00108.23 gi|119872930|ref|YP_930937.1| - 3.6e-24 85.5 0.0 1.1e-23 83.9 0.0 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|119872930|ref|YP_930937.1| - 7.1e-10 38.6 1.0 6.1e-09 35.6 0.1 2.7 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|119872930|ref|YP_930937.1| - 3.6e-05 23.5 0.6 3.6e-05 23.5 0.6 3.0 3 1 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|119872930|ref|YP_930937.1| - 0.00033 20.5 0.1 0.0034 17.2 0.1 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 3HCDH_N PF02737.18 gi|119872931|ref|YP_930938.1| - 1.6e-67 226.8 1.0 2.5e-67 226.2 1.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|119872931|ref|YP_930938.1| - 6.2e-50 167.8 0.1 6.2e-24 84.4 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|119872931|ref|YP_930938.1| - 4.5e-14 52.2 0.0 1.3e-13 50.8 0.0 1.8 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|119872931|ref|YP_930938.1| - 8.3e-11 41.6 0.2 1.7e-10 40.5 0.2 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) NAD_binding_2 PF03446.15 gi|119872931|ref|YP_930938.1| - 0.00016 21.9 0.1 0.00033 20.9 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|119872931|ref|YP_930938.1| - 0.0028 18.2 0.1 0.007 16.9 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|119872931|ref|YP_930938.1| - 0.0031 16.8 0.4 0.0048 16.2 0.4 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|119872931|ref|YP_930938.1| - 0.0089 16.6 0.9 0.038 14.5 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|119872931|ref|YP_930938.1| - 0.013 15.1 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|119872931|ref|YP_930938.1| - 0.015 15.3 0.4 0.1 12.5 0.1 2.2 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HypA PF01155.19 gi|119872931|ref|YP_930938.1| - 0.022 14.8 0.3 0.089 12.8 0.1 2.1 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TrkA_N PF02254.18 gi|119872931|ref|YP_930938.1| - 0.053 13.8 0.1 0.24 11.7 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain ApbA PF02558.16 gi|119872931|ref|YP_930938.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short_C2 PF13561.6 gi|119872931|ref|YP_930938.1| - 0.12 12.0 0.3 0.21 11.1 0.1 1.5 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|119872931|ref|YP_930938.1| - 0.19 11.2 0.1 0.37 10.2 0.1 1.5 1 0 0 1 1 1 0 short chain dehydrogenase zinc_ribbon_4 PF13717.6 gi|119872931|ref|YP_930938.1| - 4.9 7.1 8.3 4.7 7.2 1.5 2.6 2 0 0 2 2 2 0 zinc-ribbon domain eIF-5_eIF-2B PF01873.17 gi|119872932|ref|YP_930939.1| - 3.2e-29 101.2 0.0 3.7e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Tmemb_55A PF09788.9 gi|119872932|ref|YP_930939.1| - 0.0063 15.6 0.1 0.0073 15.4 0.1 1.1 1 0 0 1 1 1 1 Transmembrane protein 55A Lar_restr_allev PF14354.6 gi|119872932|ref|YP_930939.1| - 0.01 16.2 0.6 0.018 15.4 0.6 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|119872932|ref|YP_930939.1| - 0.032 14.1 0.1 0.032 14.1 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Elf1 PF05129.13 gi|119872932|ref|YP_930939.1| - 0.038 14.0 0.2 0.074 13.1 0.2 1.5 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-RRN7 PF11781.8 gi|119872932|ref|YP_930939.1| - 0.089 12.5 0.5 3.9 7.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Vps36-NZF-N PF16988.5 gi|119872932|ref|YP_930939.1| - 0.2 11.1 0.6 0.35 10.3 0.6 1.3 1 0 0 1 1 1 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain EamA PF00892.20 gi|119872933|ref|YP_930940.1| - 1.1e-25 90.3 37.4 1.3e-13 51.3 17.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family YHS PF04945.13 gi|119872934|ref|YP_930941.1| - 1.9e-21 75.9 2.8 2.2e-21 75.7 2.8 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|119872934|ref|YP_930941.1| - 0.0045 16.9 0.9 0.008 16.1 0.6 1.5 1 1 1 2 2 2 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|119872934|ref|YP_930941.1| - 0.0063 16.1 0.0 0.0065 16.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function Arc_trans_TRASH PF08394.10 gi|119872934|ref|YP_930941.1| - 0.0088 16.4 2.4 0.0088 16.4 2.4 1.6 1 1 0 1 1 1 1 Archaeal TRASH domain DUF3254 PF11630.8 gi|119872934|ref|YP_930941.1| - 0.08 13.1 0.4 0.15 12.3 0.4 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3254) E1-E2_ATPase PF00122.20 gi|119872935|ref|YP_930942.1| - 7.7e-55 185.2 1.2 2.2e-54 183.7 1.2 1.9 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|119872935|ref|YP_930942.1| - 9.4e-43 146.9 1.1 2.1e-42 145.8 1.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|119872935|ref|YP_930942.1| - 1.6e-19 70.1 0.4 3.6e-13 49.7 0.0 3.8 4 0 0 4 4 4 2 Heavy-metal-associated domain HAD PF12710.7 gi|119872935|ref|YP_930942.1| - 6.5e-07 29.9 0.1 2.4e-06 28.1 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|119872935|ref|YP_930942.1| - 6.5e-06 26.1 0.1 0.0064 16.3 0.2 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase LytR_C PF13399.6 gi|119872935|ref|YP_930942.1| - 0.0005 21.0 0.5 0.35 11.9 0.1 3.4 3 1 0 3 3 3 1 LytR cell envelope-related transcriptional attenuator Hydrolase_6 PF13344.6 gi|119872935|ref|YP_930942.1| - 0.0048 17.0 0.0 0.046 13.8 0.0 2.7 2 1 1 3 3 2 1 Haloacid dehalogenase-like hydrolase UPF0180 PF03698.13 gi|119872935|ref|YP_930942.1| - 0.011 15.9 0.8 5.1 7.3 0.0 3.4 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0180) Thump_like PF18096.1 gi|119872935|ref|YP_930942.1| - 0.06 13.3 0.1 0.81 9.7 0.1 2.8 1 1 0 1 1 1 0 THUMP domain-like EAL PF00563.20 gi|119872935|ref|YP_930942.1| - 0.092 12.2 0.0 2.8 7.4 0.0 2.4 2 0 0 2 2 2 0 EAL domain Rbx_binding PF18113.1 gi|119872935|ref|YP_930942.1| - 0.099 12.4 0.3 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin binding C-terminal domain Helicase_RecD PF05127.14 gi|119872936|ref|YP_930943.1| - 3.1e-54 183.5 0.0 4.6e-54 182.9 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|119872936|ref|YP_930943.1| - 7.2e-44 149.9 0.0 7.5e-30 104.0 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|119872936|ref|YP_930943.1| - 7e-32 109.2 0.0 2.7e-31 107.4 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|119872936|ref|YP_930943.1| - 2.6e-05 24.4 0.0 6.3e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|119872936|ref|YP_930943.1| - 0.018 15.4 0.5 0.065 13.7 0.0 2.2 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|119872936|ref|YP_930943.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain VitK2_biosynth PF02621.14 gi|119872937|ref|YP_930944.1| - 1.2e-81 274.2 0.1 1.3e-81 274.0 0.1 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis EamA PF00892.20 gi|119872938|ref|YP_930945.1| - 1.1e-21 77.5 31.2 2.5e-15 56.9 10.5 2.6 2 1 0 2 2 2 2 EamA-like transporter family ATPase_2 PF01637.18 gi|119872939|ref|YP_930946.1| - 8e-24 84.8 0.1 6.9e-22 78.5 0.1 2.2 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|119872939|ref|YP_930946.1| - 3.1e-14 53.2 0.0 5.8e-14 52.3 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.6 gi|119872939|ref|YP_930946.1| - 2.4e-08 34.1 0.0 4.5e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119872939|ref|YP_930946.1| - 2.4e-07 31.3 0.1 6e-07 30.0 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119872939|ref|YP_930946.1| - 0.0001 22.6 0.3 0.00069 19.9 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|119872939|ref|YP_930946.1| - 0.00085 19.8 0.0 0.0016 18.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TrmB PF01978.19 gi|119872939|ref|YP_930946.1| - 0.06 13.2 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TniB PF05621.11 gi|119872939|ref|YP_930946.1| - 0.099 12.0 0.0 8.5 5.7 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein OrfB_Zn_ribbon PF07282.11 gi|119872940|ref|YP_930947.1| - 3.3e-10 39.7 0.0 7.6e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|119872940|ref|YP_930947.1| - 0.011 15.7 0.2 0.021 14.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|119872940|ref|YP_930947.1| - 0.017 14.8 1.4 0.036 13.7 1.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit RPA_interact_C PF14768.6 gi|119872940|ref|YP_930947.1| - 0.048 14.2 0.2 0.11 13.1 0.2 1.6 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zinc-ribbons_6 PF07191.12 gi|119872940|ref|YP_930947.1| - 0.063 13.3 0.8 0.11 12.5 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|119872940|ref|YP_930947.1| - 0.064 13.2 0.4 0.11 12.4 0.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|119872940|ref|YP_930947.1| - 0.071 12.8 2.9 0.14 11.9 2.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain C1_1 PF00130.22 gi|119872940|ref|YP_930947.1| - 0.085 12.7 0.5 0.16 11.9 0.5 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Rep_fac-A_C PF08646.10 gi|119872940|ref|YP_930947.1| - 0.11 12.2 0.3 0.21 11.3 0.3 1.3 1 0 0 1 1 1 0 Replication factor-A C terminal domain zf-C4_Topoisom PF01396.19 gi|119872940|ref|YP_930947.1| - 0.11 12.3 4.7 1.5 8.6 4.9 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|119872940|ref|YP_930947.1| - 0.14 12.3 1.5 0.24 11.6 1.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|119872940|ref|YP_930947.1| - 0.14 12.1 0.2 0.47 10.5 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|119872940|ref|YP_930947.1| - 0.14 12.8 2.6 4.7 8.0 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.12 gi|119872940|ref|YP_930947.1| - 0.17 11.4 2.1 0.37 10.3 2.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.16 gi|119872940|ref|YP_930947.1| - 0.22 11.6 1.7 5.9 7.0 0.1 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ogr_Delta PF04606.12 gi|119872940|ref|YP_930947.1| - 0.32 11.0 1.3 25 4.9 0.1 2.6 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 gi|119872940|ref|YP_930947.1| - 0.61 9.8 3.6 1.5 8.5 3.6 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|119872940|ref|YP_930947.1| - 0.64 10.0 3.7 4.1 7.4 3.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|119872940|ref|YP_930947.1| - 2.5 7.5 4.0 7.5 6.0 4.0 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|119872940|ref|YP_930947.1| - 7.2 6.2 6.3 32 4.1 0.8 2.3 1 1 1 2 2 2 0 zinc-ribbon domain ThiC_Rad_SAM PF01964.18 gi|119872942|ref|YP_930949.1| - 6.4e-163 542.4 0.0 7.4e-163 542.2 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Met_asp_mut_E PF06368.11 gi|119872942|ref|YP_930949.1| - 0.07 11.6 0.0 0.1 11.0 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) Diphthami_syn_2 PF01902.17 gi|119872943|ref|YP_930950.1| - 2.9e-22 79.2 0.0 3.4e-22 79.0 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase PALP PF00291.25 gi|119872943|ref|YP_930950.1| - 0.0028 17.1 0.0 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PELOTA_1 PF15608.6 gi|119872943|ref|YP_930950.1| - 0.11 12.4 0.1 0.44 10.5 0.1 1.9 1 1 1 2 2 2 0 PELOTA RNA binding domain Asn_synthase PF00733.21 gi|119872944|ref|YP_930951.1| - 2e-17 63.9 0.0 2.2e-13 50.6 0.0 2.1 1 1 0 2 2 2 2 Asparagine synthase zinc_ribbon_2 PF13240.6 gi|119872944|ref|YP_930951.1| - 0.011 15.4 2.7 0.071 12.9 2.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|119872944|ref|YP_930951.1| - 0.017 15.1 0.4 0.041 13.9 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon ATP_bind_3 PF01171.20 gi|119872944|ref|YP_930951.1| - 0.067 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 PP-loop family zf-ribbon_3 PF13248.6 gi|119872944|ref|YP_930951.1| - 0.1 12.0 2.7 0.32 10.5 2.7 1.8 1 0 0 1 1 1 0 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|119872944|ref|YP_930951.1| - 0.16 12.3 1.4 0.41 10.9 1.4 1.7 1 0 0 1 1 1 0 Ribosomal L32p protein family NAD_synthase PF02540.17 gi|119872946|ref|YP_930953.1| - 2e-80 269.4 0.0 2.3e-80 269.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|119872946|ref|YP_930953.1| - 1.6e-08 33.8 0.2 3.1e-05 22.9 0.1 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|119872946|ref|YP_930953.1| - 4.5e-06 26.3 0.0 1.8e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|119872946|ref|YP_930953.1| - 0.00015 21.5 0.1 0.00024 20.9 0.1 1.2 1 1 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.20 gi|119872946|ref|YP_930953.1| - 0.066 13.0 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 PP-loop family P-II PF00543.22 gi|119872947|ref|YP_930954.1| - 1.7e-25 89.6 1.5 1.9e-25 89.4 1.5 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.15 gi|119872947|ref|YP_930954.1| - 0.00036 20.8 0.2 0.00047 20.4 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1993 CdAMP_rec PF06153.11 gi|119872947|ref|YP_930954.1| - 0.14 12.3 2.5 3.4 7.9 0.9 2.7 1 1 1 2 2 2 0 Cyclic-di-AMP receptor Ammonium_transp PF00909.21 gi|119872948|ref|YP_930955.1| - 2.6e-77 260.2 24.7 3.8e-77 259.7 24.7 1.2 1 0 0 1 1 1 1 Ammonium Transporter Family Glycos_transf_2 PF00535.26 gi|119872949|ref|YP_930956.1| - 2.6e-29 102.2 0.0 3.8e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119872949|ref|YP_930956.1| - 1.6e-19 70.7 1.9 4.5e-19 69.2 1.9 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|119872949|ref|YP_930956.1| - 3.8e-08 33.5 0.1 5.7e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|119872949|ref|YP_930956.1| - 2.8e-05 24.5 0.2 5.5e-05 23.6 0.2 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|119872949|ref|YP_930956.1| - 0.0057 17.0 11.4 0.012 16.0 11.3 1.8 1 1 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|119872949|ref|YP_930956.1| - 0.039 13.8 0.1 0.073 12.9 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) NTP_transferase PF00483.23 gi|119872949|ref|YP_930956.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|119872949|ref|YP_930956.1| - 0.097 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Cytidylyltransferase zf-TFIIB PF13453.6 gi|119872950|ref|YP_930957.1| - 1.8e-17 62.4 0.8 3.1e-17 61.6 0.8 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|119872950|ref|YP_930957.1| - 4.5e-05 23.0 0.2 9.6e-05 22.0 0.2 1.5 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119872950|ref|YP_930957.1| - 0.0015 17.9 1.4 0.82 9.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|119872950|ref|YP_930957.1| - 0.0021 18.0 0.1 0.0031 17.5 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|119872950|ref|YP_930957.1| - 0.0073 16.2 2.5 0.11 12.5 0.1 2.2 2 0 0 2 2 2 1 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|119872950|ref|YP_930957.1| - 0.027 14.0 0.7 4.8 6.8 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|119872950|ref|YP_930957.1| - 0.031 14.2 0.9 0.049 13.6 0.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF1272 PF06906.11 gi|119872950|ref|YP_930957.1| - 0.068 13.3 0.3 10 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) UPF0547 PF10571.9 gi|119872950|ref|YP_930957.1| - 0.089 12.9 2.1 3.9 7.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.7 gi|119872950|ref|YP_930957.1| - 0.21 12.0 4.0 4.7 7.7 0.2 2.7 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Nop10p PF04135.12 gi|119872950|ref|YP_930957.1| - 0.23 11.5 2.6 0.24 11.5 0.1 2.1 2 1 0 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family RNA_POL_M_15KD PF02150.16 gi|119872950|ref|YP_930957.1| - 0.24 11.3 3.1 2 8.3 0.2 2.6 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|119872950|ref|YP_930957.1| - 0.25 11.0 4.2 1.9 8.2 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|119872950|ref|YP_930957.1| - 0.65 10.2 4.3 7.2 6.8 4.3 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119872950|ref|YP_930957.1| - 0.68 10.0 3.9 12 5.9 4.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|119872950|ref|YP_930957.1| - 1.9 8.5 7.8 2.3 8.3 0.6 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-tcix PF14952.6 gi|119872950|ref|YP_930957.1| - 4.1 7.1 6.8 7.1 6.3 1.3 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rad50_zn_hook PF04423.14 gi|119872950|ref|YP_930957.1| - 5.5 6.9 5.6 8.8 6.3 0.2 2.8 2 1 0 2 2 2 0 Rad50 zinc hook motif Glyco_transf_4 PF13439.6 gi|119872951|ref|YP_930958.1| - 1.2e-21 77.4 10.0 1.2e-21 77.4 10.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119872951|ref|YP_930958.1| - 3.8e-14 53.4 20.6 3.8e-14 53.4 20.6 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|119872951|ref|YP_930958.1| - 2.8e-08 33.5 0.0 5.5e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872951|ref|YP_930958.1| - 4.1e-07 30.5 0.5 1.7e-06 28.5 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|119872951|ref|YP_930958.1| - 0.0025 17.9 0.0 0.0044 17.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_5 PF08323.11 gi|119872951|ref|YP_930958.1| - 0.31 10.7 4.0 0.3 10.7 1.3 2.0 2 0 0 2 2 2 0 Starch synthase catalytic domain Baculo_PEP_C PF04513.12 gi|119872952|ref|YP_930959.1| - 2.3e-09 37.4 2.6 3.2e-09 37.0 2.6 1.2 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus HSBP1 PF06825.12 gi|119872952|ref|YP_930959.1| - 4.2e-08 32.9 4.0 7.8e-05 22.5 0.5 3.0 1 1 1 2 2 2 2 Heat shock factor binding protein 1 Fib_alpha PF08702.10 gi|119872952|ref|YP_930959.1| - 3.3e-06 27.3 0.8 5e-06 26.7 0.8 1.2 1 0 0 1 1 1 1 Fibrinogen alpha/beta chain family Apolipoprotein PF01442.18 gi|119872952|ref|YP_930959.1| - 3.4e-06 27.1 1.1 3.4e-06 27.1 1.1 1.7 2 0 0 2 2 1 1 Apolipoprotein A1/A4/E domain Snapin_Pallidin PF14712.6 gi|119872952|ref|YP_930959.1| - 3.6e-06 27.3 1.4 0.014 15.8 0.0 2.2 1 1 1 2 2 2 2 Snapin/Pallidin NPV_P10 PF05531.12 gi|119872952|ref|YP_930959.1| - 6.2e-06 26.6 7.6 0.0017 18.8 1.2 2.9 1 1 1 3 3 2 2 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.6 gi|119872952|ref|YP_930959.1| - 1.1e-05 25.0 0.9 1.2e-05 24.8 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF16 PF01519.16 gi|119872952|ref|YP_930959.1| - 2.1e-05 24.9 4.7 0.00045 20.7 0.6 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF16 XhlA PF10779.9 gi|119872952|ref|YP_930959.1| - 4.4e-05 23.6 7.7 0.0066 16.6 1.5 2.4 1 1 1 2 2 2 2 Haemolysin XhlA DUF948 PF06103.11 gi|119872952|ref|YP_930959.1| - 4.8e-05 23.5 1.4 0.064 13.5 0.1 2.4 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) KxDL PF10241.9 gi|119872952|ref|YP_930959.1| - 5.4e-05 23.4 0.8 0.0001 22.5 0.3 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein FliD_C PF07195.12 gi|119872952|ref|YP_930959.1| - 6.1e-05 22.6 1.3 0.055 12.9 0.1 2.1 1 1 1 2 2 2 2 Flagellar hook-associated protein 2 C-terminus Prefoldin_2 PF01920.20 gi|119872952|ref|YP_930959.1| - 9.3e-05 22.3 4.3 0.014 15.3 0.1 2.4 2 1 1 3 3 2 1 Prefoldin subunit Uds1 PF15456.6 gi|119872952|ref|YP_930959.1| - 9.9e-05 22.5 1.3 0.00018 21.6 1.3 1.4 1 0 0 1 1 1 1 Up-regulated During Septation ABC_tran_CTD PF16326.5 gi|119872952|ref|YP_930959.1| - 0.00016 21.8 1.6 0.047 14.0 0.2 2.5 1 1 1 2 2 2 1 ABC transporter C-terminal domain DivIC PF04977.15 gi|119872952|ref|YP_930959.1| - 0.00024 20.8 3.7 0.018 14.8 0.5 2.4 1 1 1 2 2 2 1 Septum formation initiator Exonuc_VII_L PF02601.15 gi|119872952|ref|YP_930959.1| - 0.00025 20.7 0.3 0.00028 20.6 0.3 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF1664 PF07889.12 gi|119872952|ref|YP_930959.1| - 0.00027 21.0 4.9 0.0022 18.0 3.5 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|119872952|ref|YP_930959.1| - 0.00029 20.2 0.4 0.00043 19.7 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) AAA_13 PF13166.6 gi|119872952|ref|YP_930959.1| - 0.0004 19.2 0.3 0.00041 19.1 0.3 1.1 1 0 0 1 1 1 1 AAA domain MscS_porin PF12795.7 gi|119872952|ref|YP_930959.1| - 0.00042 19.9 6.0 0.00097 18.7 6.0 1.5 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain WASH_WAHD PF11945.8 gi|119872952|ref|YP_930959.1| - 0.00053 19.6 4.5 0.16 11.5 0.3 2.2 1 1 1 2 2 2 2 WAHD domain of WASH complex Laminin_I PF06008.14 gi|119872952|ref|YP_930959.1| - 0.00075 19.3 1.3 0.0014 18.4 1.3 1.4 1 0 0 1 1 1 1 Laminin Domain I DUF3584 PF12128.8 gi|119872952|ref|YP_930959.1| - 0.00078 17.1 0.6 0.00097 16.8 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) T3SSipB PF16535.5 gi|119872952|ref|YP_930959.1| - 0.001 19.6 0.1 0.0016 19.0 0.1 1.3 1 0 0 1 1 1 1 Type III cell invasion protein SipB Tektin PF03148.14 gi|119872952|ref|YP_930959.1| - 0.0011 17.8 2.9 0.017 13.9 3.4 1.9 1 1 1 2 2 2 1 Tektin family SF-assemblin PF06705.11 gi|119872952|ref|YP_930959.1| - 0.0012 18.2 3.0 0.0012 18.2 3.0 1.5 2 0 0 2 2 1 1 SF-assemblin/beta giardin Phasin PF05597.11 gi|119872952|ref|YP_930959.1| - 0.0014 18.6 4.3 0.069 13.2 1.6 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) FlaC_arch PF05377.11 gi|119872952|ref|YP_930959.1| - 0.0015 18.9 4.0 0.66 10.4 1.5 3.0 2 1 0 2 2 1 1 Flagella accessory protein C (FlaC) CorA PF01544.18 gi|119872952|ref|YP_930959.1| - 0.0015 17.9 6.8 0.0038 16.6 6.8 1.6 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein KH_5 PF13184.6 gi|119872952|ref|YP_930959.1| - 0.0017 18.4 2.5 0.073 13.2 0.1 2.9 2 1 1 3 3 2 1 NusA-like KH domain DUF4988 PF16378.5 gi|119872952|ref|YP_930959.1| - 0.002 17.8 4.1 0.28 10.9 0.4 2.3 2 0 0 2 2 2 1 Domain of unknown function HMMR_N PF15905.5 gi|119872952|ref|YP_930959.1| - 0.0024 17.4 1.2 0.0028 17.2 1.2 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF3552 PF12072.8 gi|119872952|ref|YP_930959.1| - 0.0029 17.0 2.9 0.0035 16.8 2.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) FliJ PF02050.16 gi|119872952|ref|YP_930959.1| - 0.003 17.8 0.9 0.003 17.8 0.9 1.6 2 1 0 2 2 1 1 Flagellar FliJ protein GAS PF13851.6 gi|119872952|ref|YP_930959.1| - 0.0033 16.8 0.3 0.0047 16.3 0.3 1.2 1 0 0 1 1 1 1 Growth-arrest specific micro-tubule binding MCPsignal PF00015.21 gi|119872952|ref|YP_930959.1| - 0.0037 17.1 0.8 0.37 10.6 0.2 2.0 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain ApoLp-III PF07464.11 gi|119872952|ref|YP_930959.1| - 0.0037 17.4 0.8 0.0095 16.0 0.1 1.9 2 0 0 2 2 1 1 Apolipophorin-III precursor (apoLp-III) Transcrip_act PF04949.13 gi|119872952|ref|YP_930959.1| - 0.0046 16.9 2.9 0.91 9.4 0.2 2.3 1 1 1 2 2 2 1 Transcriptional activator Laminin_II PF06009.12 gi|119872952|ref|YP_930959.1| - 0.0048 16.9 2.0 0.0048 16.9 2.0 1.8 2 0 0 2 2 1 1 Laminin Domain II GCN5L1 PF06320.13 gi|119872952|ref|YP_930959.1| - 0.0049 17.0 0.2 0.0082 16.3 0.2 1.4 1 0 0 1 1 1 1 GCN5-like protein 1 (GCN5L1) COG6 PF06419.11 gi|119872952|ref|YP_930959.1| - 0.0049 15.2 0.3 0.063 11.5 0.0 2.0 1 1 1 2 2 2 1 Conserved oligomeric complex COG6 RmuC PF02646.16 gi|119872952|ref|YP_930959.1| - 0.0051 16.0 0.4 0.12 11.5 0.1 2.1 1 1 1 2 2 2 1 RmuC family HrpB7 PF09486.10 gi|119872952|ref|YP_930959.1| - 0.0065 16.9 8.1 0.037 14.4 2.4 2.3 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) MukF_M PF17192.4 gi|119872952|ref|YP_930959.1| - 0.0068 16.2 1.5 0.01 15.6 1.5 1.2 1 0 0 1 1 1 1 MukF middle domain Tropomyosin_1 PF12718.7 gi|119872952|ref|YP_930959.1| - 0.0074 16.4 2.5 0.0074 16.4 2.5 2.3 2 1 0 2 2 1 1 Tropomyosin like Prefoldin_3 PF13758.6 gi|119872952|ref|YP_930959.1| - 0.0074 16.3 6.2 1.5 8.9 0.7 3.1 1 1 3 4 4 4 0 Prefoldin subunit Spectrin PF00435.21 gi|119872952|ref|YP_930959.1| - 0.0075 16.7 0.7 0.047 14.2 0.6 2.1 1 1 0 1 1 1 1 Spectrin repeat DUF4140 PF13600.6 gi|119872952|ref|YP_930959.1| - 0.0075 16.7 2.9 0.67 10.4 0.1 2.3 1 1 1 2 2 2 1 N-terminal domain of unknown function (DUF4140) IFT57 PF10498.9 gi|119872952|ref|YP_930959.1| - 0.0079 15.2 0.1 0.011 14.8 0.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Nup88 PF10168.9 gi|119872952|ref|YP_930959.1| - 0.008 14.0 0.2 0.0088 13.9 0.2 1.1 1 0 0 1 1 1 1 Nuclear pore component Fzo_mitofusin PF04799.13 gi|119872952|ref|YP_930959.1| - 0.0089 15.6 0.9 0.028 14.0 0.9 1.8 1 1 0 1 1 1 1 fzo-like conserved region EzrA PF06160.12 gi|119872952|ref|YP_930959.1| - 0.009 14.2 2.6 0.032 12.4 2.5 1.7 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA TRPM_tetra PF16519.5 gi|119872952|ref|YP_930959.1| - 0.0095 16.0 0.5 5.3 7.2 0.0 2.6 2 1 0 2 2 2 0 Tetramerisation domain of TRPM UPF0184 PF03670.13 gi|119872952|ref|YP_930959.1| - 0.011 16.1 5.0 1 9.8 0.6 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) Seryl_tRNA_N PF02403.22 gi|119872952|ref|YP_930959.1| - 0.011 15.9 4.2 0.26 11.5 3.4 2.6 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|119872952|ref|YP_930959.1| - 0.011 15.6 4.5 0.92 9.4 0.3 2.4 1 1 1 2 2 2 0 Prefoldin subunit TBCC_N PF16752.5 gi|119872952|ref|YP_930959.1| - 0.012 16.0 2.4 0.042 14.3 2.2 1.9 1 1 1 2 2 2 0 Tubulin-specific chaperone C N-terminal domain TPR_MLP1_2 PF07926.12 gi|119872952|ref|YP_930959.1| - 0.013 15.6 0.3 0.37 10.8 0.3 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein RPW8 PF05659.11 gi|119872952|ref|YP_930959.1| - 0.016 14.9 2.7 1.6 8.4 0.2 2.5 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 HalX PF08663.10 gi|119872952|ref|YP_930959.1| - 0.016 15.5 6.5 3.5 8.0 3.2 3.5 1 1 1 2 2 2 0 HalX domain Matrilin_ccoil PF10393.9 gi|119872952|ref|YP_930959.1| - 0.017 15.0 1.3 2.6 8.0 0.1 3.0 1 1 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Atg14 PF10186.9 gi|119872952|ref|YP_930959.1| - 0.017 14.3 3.3 0.023 13.8 3.3 1.3 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMF_DNA_bd PF12329.8 gi|119872952|ref|YP_930959.1| - 0.017 15.1 3.4 2.9 8.0 0.1 2.8 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding BshC PF10079.9 gi|119872952|ref|YP_930959.1| - 0.019 13.8 0.3 0.021 13.6 0.3 1.0 1 0 0 1 1 1 0 Bacillithiol biosynthesis BshC DUF1515 PF07439.11 gi|119872952|ref|YP_930959.1| - 0.02 14.9 2.9 1.4 9.0 2.9 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) DivIVA PF05103.13 gi|119872952|ref|YP_930959.1| - 0.02 15.0 0.5 4.6 7.3 0.0 2.2 1 1 1 2 2 2 0 DivIVA protein Filament PF00038.21 gi|119872952|ref|YP_930959.1| - 0.021 14.4 2.2 0.54 9.8 0.4 2.0 1 1 1 2 2 2 0 Intermediate filament protein Golgin_A5 PF09787.9 gi|119872952|ref|YP_930959.1| - 0.021 14.3 0.8 0.044 13.2 0.8 1.6 1 1 0 1 1 1 0 Golgin subfamily A member 5 TMP_2 PF06791.13 gi|119872952|ref|YP_930959.1| - 0.021 14.5 0.0 0.22 11.2 0.0 2.2 1 1 0 1 1 1 0 Prophage tail length tape measure protein CdvA PF18822.1 gi|119872952|ref|YP_930959.1| - 0.021 14.6 7.2 0.079 12.8 4.0 2.9 2 1 1 3 3 2 0 CdvA-like coiled-coil domain Spc7 PF08317.11 gi|119872952|ref|YP_930959.1| - 0.022 13.6 1.9 0.036 12.9 1.9 1.4 1 1 0 1 1 1 0 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|119872952|ref|YP_930959.1| - 0.023 15.0 1.3 3 8.2 0.1 2.4 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fmp27_WPPW PF10359.9 gi|119872952|ref|YP_930959.1| - 0.023 13.6 1.5 0.031 13.2 1.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF2802 PF10975.8 gi|119872952|ref|YP_930959.1| - 0.023 14.8 2.5 2.3 8.4 0.3 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2802) DUF2203 PF09969.9 gi|119872952|ref|YP_930959.1| - 0.023 15.4 1.1 0.049 14.3 0.8 1.7 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) CLZ PF16526.5 gi|119872952|ref|YP_930959.1| - 0.023 15.0 2.2 0.96 9.9 0.3 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Lebercilin PF15619.6 gi|119872952|ref|YP_930959.1| - 0.023 14.3 1.9 0.053 13.2 1.9 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease ZapA PF05164.13 gi|119872952|ref|YP_930959.1| - 0.028 14.9 1.2 3 8.4 0.1 2.7 1 1 1 2 2 2 0 Cell division protein ZapA DUF5098 PF17023.5 gi|119872952|ref|YP_930959.1| - 0.03 13.3 0.6 0.51 9.2 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF5098) DUF1640 PF07798.11 gi|119872952|ref|YP_930959.1| - 0.032 14.3 3.5 0.34 11.0 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) DUF4795 PF16043.5 gi|119872952|ref|YP_930959.1| - 0.033 13.8 3.3 0.049 13.2 3.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Syntaxin PF00804.25 gi|119872952|ref|YP_930959.1| - 0.035 13.8 1.5 0.061 13.0 1.5 1.5 1 1 0 1 1 1 0 Syntaxin Nup54 PF13874.6 gi|119872952|ref|YP_930959.1| - 0.036 14.2 2.3 0.06 13.4 0.8 1.8 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 UPF0242 PF06785.11 gi|119872952|ref|YP_930959.1| - 0.038 14.1 1.8 0.044 13.9 1.8 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TACC_C PF05010.14 gi|119872952|ref|YP_930959.1| - 0.038 13.8 0.3 2.8 7.7 0.0 2.1 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal LXG PF04740.12 gi|119872952|ref|YP_930959.1| - 0.041 13.6 0.4 0.061 13.0 0.4 1.2 1 0 0 1 1 1 0 LXG domain of WXG superfamily DUF4164 PF13747.6 gi|119872952|ref|YP_930959.1| - 0.044 14.1 9.3 0.96 9.8 8.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) YlqD PF11068.8 gi|119872952|ref|YP_930959.1| - 0.046 14.1 1.2 0.086 13.2 1.2 1.4 1 0 0 1 1 1 0 YlqD protein Allexi_40kDa PF05549.11 gi|119872952|ref|YP_930959.1| - 0.049 13.1 0.3 0.08 12.4 0.3 1.5 1 1 0 1 1 1 0 Allexivirus 40kDa protein MitMem_reg PF13012.6 gi|119872952|ref|YP_930959.1| - 0.051 14.0 0.1 0.81 10.1 0.1 2.1 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function DUF4763 PF15960.5 gi|119872952|ref|YP_930959.1| - 0.053 12.8 0.7 0.19 11.0 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) DUF3782 PF12644.7 gi|119872952|ref|YP_930959.1| - 0.057 13.6 2.3 4.4 7.5 0.1 3.0 1 1 1 3 3 2 0 Protein of unknown function (DUF3782) FlxA PF14282.6 gi|119872952|ref|YP_930959.1| - 0.057 13.4 4.0 0.14 12.2 1.1 2.2 1 1 1 2 2 2 0 FlxA-like protein COG2 PF06148.11 gi|119872952|ref|YP_930959.1| - 0.057 13.5 2.1 0.32 11.1 1.1 2.4 1 1 1 2 2 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Erythro-docking PF09277.11 gi|119872952|ref|YP_930959.1| - 0.058 13.3 1.2 1.2 9.1 0.1 2.6 1 1 1 2 2 2 0 Erythronolide synthase, docking DUF4200 PF13863.6 gi|119872952|ref|YP_930959.1| - 0.061 13.7 1.9 0.19 12.1 1.9 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TMPIT PF07851.13 gi|119872952|ref|YP_930959.1| - 0.064 12.5 0.1 0.091 12.0 0.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein DUF5082 PF16888.5 gi|119872952|ref|YP_930959.1| - 0.065 13.5 6.3 0.2 11.9 1.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) FUSC PF04632.12 gi|119872952|ref|YP_930959.1| - 0.065 11.8 0.5 0.084 11.4 0.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family FmiP_Thoc5 PF09766.9 gi|119872952|ref|YP_930959.1| - 0.065 12.5 1.4 0.21 10.9 1.4 1.6 1 1 0 1 1 1 0 Fms-interacting protein/Thoc5 Mt_ATP-synt_B PF05405.14 gi|119872952|ref|YP_930959.1| - 0.071 12.7 0.2 0.34 10.5 0.1 1.9 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Muted PF14942.6 gi|119872952|ref|YP_930959.1| - 0.072 13.4 1.0 2.1 8.7 0.3 2.0 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein DUF4041 PF13250.6 gi|119872952|ref|YP_930959.1| - 0.074 12.9 1.3 4.4 7.3 0.1 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4041) Corona_S2 PF01601.16 gi|119872952|ref|YP_930959.1| - 0.08 11.4 0.2 0.089 11.3 0.2 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein YvrJ PF12841.7 gi|119872952|ref|YP_930959.1| - 0.083 12.4 1.7 17 5.0 0.2 3.8 1 1 3 4 4 4 0 YvrJ protein family Prominin PF05478.11 gi|119872952|ref|YP_930959.1| - 0.087 10.8 0.3 0.086 10.8 0.3 1.1 1 0 0 1 1 1 0 Prominin THOC7 PF05615.13 gi|119872952|ref|YP_930959.1| - 0.088 13.1 4.8 0.31 11.3 3.3 2.2 1 1 1 2 2 2 0 Tho complex subunit 7 DUF2730 PF10805.8 gi|119872952|ref|YP_930959.1| - 0.096 12.8 1.7 2.6 8.2 0.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) WXG100 PF06013.12 gi|119872952|ref|YP_930959.1| - 0.11 12.7 3.9 1.6 9.0 2.1 2.8 2 1 0 2 2 1 0 Proteins of 100 residues with WXG Hemagglutinin PF00509.18 gi|119872952|ref|YP_930959.1| - 0.12 10.8 1.5 0.24 9.7 1.1 1.5 1 1 1 2 2 2 0 Haemagglutinin Baculo_F PF12259.8 gi|119872952|ref|YP_930959.1| - 0.13 10.8 0.4 0.15 10.5 0.4 1.0 1 0 0 1 1 1 0 Baculovirus F protein Dynamitin PF04912.14 gi|119872952|ref|YP_930959.1| - 0.13 11.6 4.0 0.17 11.2 4.0 1.1 1 0 0 1 1 1 0 Dynamitin DUF1451 PF07295.11 gi|119872952|ref|YP_930959.1| - 0.13 12.3 2.9 0.5 10.4 1.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon containing domain Phage_Mu_Gam PF07352.12 gi|119872952|ref|YP_930959.1| - 0.13 12.2 2.4 1.5 8.7 2.4 2.2 1 1 0 1 1 1 0 Bacteriophage Mu Gam like protein FemAB PF02388.16 gi|119872952|ref|YP_930959.1| - 0.13 11.1 0.4 0.17 10.7 0.4 1.2 1 0 0 1 1 1 0 FemAB family Bacillus_HBL PF05791.11 gi|119872952|ref|YP_930959.1| - 0.14 12.0 1.9 1.7 8.5 1.7 2.0 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) CCDC-167 PF15188.6 gi|119872952|ref|YP_930959.1| - 0.14 12.5 5.2 8.7 6.8 5.2 2.7 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF1351 PF07083.11 gi|119872952|ref|YP_930959.1| - 0.14 11.9 2.2 5.4 6.7 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1351) Uso1_p115_C PF04871.13 gi|119872952|ref|YP_930959.1| - 0.14 12.5 1.0 0.17 12.2 0.1 1.6 2 0 0 2 2 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Mt_ATP-synt_D PF05873.12 gi|119872952|ref|YP_930959.1| - 0.15 11.9 0.0 0.45 10.3 0.0 1.8 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) TssO PF17561.2 gi|119872952|ref|YP_930959.1| - 0.19 11.8 0.9 13 5.9 0.2 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssO DUF2205 PF10224.9 gi|119872952|ref|YP_930959.1| - 0.21 11.6 7.0 25 4.9 3.1 3.7 1 1 1 2 2 2 0 Short coiled-coil protein dCache_2 PF08269.11 gi|119872952|ref|YP_930959.1| - 0.24 10.6 0.8 0.34 10.1 0.8 1.1 1 0 0 1 1 1 0 Cache domain LidA_Long_CC PF18641.1 gi|119872952|ref|YP_930959.1| - 0.25 11.4 4.7 0.8 9.7 1.4 2.2 1 1 1 2 2 2 0 LidA long coiled-coil domain V_ATPase_I PF01496.19 gi|119872952|ref|YP_930959.1| - 0.26 9.1 0.2 0.36 8.7 0.2 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DLP_helical PF18709.1 gi|119872952|ref|YP_930959.1| - 0.31 10.2 4.3 0.65 9.1 0.8 1.6 1 1 1 2 2 2 0 Dynamin-like helical domain TraF_2 PF13729.6 gi|119872952|ref|YP_930959.1| - 0.35 10.2 5.4 0.41 10.0 1.1 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Snf7 PF03357.21 gi|119872952|ref|YP_930959.1| - 0.42 10.2 5.8 4.7 6.8 5.1 2.2 1 1 0 1 1 1 0 Snf7 Tropomyosin PF00261.20 gi|119872952|ref|YP_930959.1| - 0.5 9.7 6.7 0.16 11.3 2.4 1.9 2 1 0 2 2 1 0 Tropomyosin Syntaxin_2 PF14523.6 gi|119872952|ref|YP_930959.1| - 0.69 10.3 6.5 1 9.8 4.1 2.3 2 1 0 2 2 1 0 Syntaxin-like protein ATP-synt_D PF01813.17 gi|119872952|ref|YP_930959.1| - 1.3 8.8 6.3 2.1 8.2 0.2 2.8 2 1 1 3 3 3 0 ATP synthase subunit D SlyX PF04102.12 gi|119872952|ref|YP_930959.1| - 1.3 9.7 8.7 31 5.3 5.7 2.8 2 1 0 2 2 1 0 SlyX SOAR PF16533.5 gi|119872952|ref|YP_930959.1| - 1.7 8.7 4.3 9.4 6.3 2.2 2.4 2 1 0 2 2 1 0 STIM1 Orai1-activating region MerR-DNA-bind PF09278.11 gi|119872952|ref|YP_930959.1| - 5.9 7.5 13.3 12 6.6 2.6 3.2 1 1 1 2 2 2 0 MerR, DNA binding DUF5336 PF17270.2 gi|119872953|ref|YP_930960.1| - 0.064 12.9 7.9 0.11 12.2 7.9 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5336) NADHdh_A3 PF14987.6 gi|119872953|ref|YP_930960.1| - 0.25 11.6 1.3 0.87 9.9 1.3 1.8 1 1 0 1 1 1 0 NADH dehydrogenase 1 alpha subcomplex subunit 3 OrfB_Zn_ribbon PF07282.11 gi|119872954|ref|YP_930961.1| - 2.6e-11 43.3 0.0 5.2e-11 42.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119872954|ref|YP_930961.1| - 0.00026 20.6 4.0 0.00057 19.5 4.0 1.5 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|119872954|ref|YP_930961.1| - 0.0026 17.9 1.8 0.0043 17.2 1.8 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.6 gi|119872954|ref|YP_930961.1| - 0.0057 16.6 0.6 0.0098 15.8 0.6 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 Ribosomal_L37e PF01907.19 gi|119872954|ref|YP_930961.1| - 0.018 15.2 0.8 0.036 14.2 0.8 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e DNA_RNApol_7kD PF03604.13 gi|119872954|ref|YP_930961.1| - 0.032 13.9 3.0 0.078 12.7 3.0 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|119872954|ref|YP_930961.1| - 0.036 14.1 0.1 0.089 12.8 0.1 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|119872954|ref|YP_930961.1| - 0.04 14.0 0.2 0.068 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|119872954|ref|YP_930961.1| - 0.05 13.5 0.2 0.092 12.7 0.2 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_2 PF13240.6 gi|119872954|ref|YP_930961.1| - 0.054 13.2 0.5 0.11 12.2 0.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|119872954|ref|YP_930961.1| - 0.084 11.6 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase CCDC92 PF14916.6 gi|119872954|ref|YP_930961.1| - 0.1 12.4 0.3 0.25 11.1 0.3 1.6 1 0 0 1 1 1 0 Coiled-coil domain of unknown function DUF2387 PF09526.10 gi|119872954|ref|YP_930961.1| - 0.16 12.1 0.1 0.37 11.0 0.1 1.6 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Mss51 PF13824.6 gi|119872954|ref|YP_930961.1| - 0.17 12.0 0.4 0.48 10.6 0.4 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 RPA_interact_C PF14768.6 gi|119872954|ref|YP_930961.1| - 0.2 12.2 0.1 0.44 11.1 0.1 1.6 1 0 0 1 1 1 0 Replication protein A interacting C-terminal PriA_CRR PF18319.1 gi|119872954|ref|YP_930961.1| - 0.21 11.6 0.2 0.42 10.6 0.2 1.5 1 0 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain zinc-ribbons_6 PF07191.12 gi|119872954|ref|YP_930961.1| - 0.23 11.5 0.6 0.4 10.7 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons TF_Zn_Ribbon PF08271.12 gi|119872954|ref|YP_930961.1| - 0.43 10.1 1.8 1.7 8.3 1.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|119872954|ref|YP_930961.1| - 1.5 8.2 3.3 4.3 6.7 3.3 1.8 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-ribbon_3 PF13248.6 gi|119872954|ref|YP_930961.1| - 1.9 8.0 5.4 20 4.8 5.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF1451 PF07295.11 gi|119872954|ref|YP_930961.1| - 3.2 7.8 6.4 1.2 9.2 0.9 2.6 3 0 0 3 3 3 0 Zinc-ribbon containing domain zf-C4_Topoisom PF01396.19 gi|119872954|ref|YP_930961.1| - 6.6 6.6 6.0 2.3 8.1 0.5 2.3 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Radical_SAM PF04055.21 gi|119872955|ref|YP_930962.1| - 2.2e-22 80.2 0.0 5.2e-22 79.0 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|119872955|ref|YP_930962.1| - 0.00052 20.1 0.0 0.00089 19.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|119872955|ref|YP_930962.1| - 0.013 15.7 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Methyltransf_23 PF13489.6 gi|119872956|ref|YP_930963.1| - 0.19 11.6 0.0 0.28 11.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain DUF3084 PF11283.8 gi|119872957|ref|YP_930964.1| - 0.016 15.2 1.2 0.33 10.9 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3084) Glycos_transf_1 PF00534.20 gi|119872958|ref|YP_930965.1| - 2.3e-17 63.1 0.0 5.4e-17 61.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872958|ref|YP_930965.1| - 1e-12 48.6 0.1 1.8e-12 47.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872958|ref|YP_930965.1| - 3.3e-09 37.0 0.2 7e-09 35.9 0.2 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Inovirus_Gp2 PF11726.8 gi|119872958|ref|YP_930965.1| - 0.015 15.3 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Inovirus Gp2 Nudix_N PF12535.8 gi|119872958|ref|YP_930965.1| - 0.024 14.2 0.1 0.076 12.6 0.1 1.9 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal Glyco_trans_1_2 PF13524.6 gi|119872958|ref|YP_930965.1| - 0.049 14.0 0.1 0.12 12.7 0.1 1.6 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|119872960|ref|YP_930967.1| - 6.2e-12 45.6 0.1 1.1e-11 44.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119872960|ref|YP_930967.1| - 2.4e-08 34.1 0.0 3.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|119872960|ref|YP_930967.1| - 0.00011 22.6 0.2 0.00029 21.3 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|119872960|ref|YP_930967.1| - 0.14 11.6 0.0 0.68 9.4 0.0 1.9 1 1 1 2 2 2 0 Glycosyl transferase family 21 Methyltransf_21 PF05050.12 gi|119872961|ref|YP_930968.1| - 0.00041 20.4 0.0 0.00058 19.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_23 PF13489.6 gi|119872961|ref|YP_930968.1| - 0.015 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|119872961|ref|YP_930968.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Met-10+ like-protein TauE PF01925.19 gi|119872962|ref|YP_930969.1| - 1.9e-44 152.1 48.3 2.2e-44 151.9 48.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE T2SSM PF04612.12 gi|119872962|ref|YP_930969.1| - 0.87 9.6 5.3 9.8 6.2 2.3 2.5 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M AAA_21 PF13304.6 gi|119872963|ref|YP_930970.1| - 7.1e-13 49.0 0.0 8.4e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119872963|ref|YP_930970.1| - 2.4e-06 27.5 0.0 0.0023 17.7 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain GMP_PDE_delta PF05351.11 gi|119872965|ref|YP_930972.1| - 0.065 13.3 0.0 0.084 12.9 0.0 1.1 1 0 0 1 1 1 0 GMP-PDE, delta subunit PaREP1 PF05942.11 gi|119872966|ref|YP_930973.1| - 3e-32 110.9 0.8 4.8e-32 110.3 0.8 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119872967|ref|YP_930974.1| - 3.3e-10 40.1 0.1 3.9e-10 39.9 0.1 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|119872968|ref|YP_930975.1| - 4.1e-12 46.2 0.0 5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|119872968|ref|YP_930975.1| - 1.1e-05 25.4 0.0 1.3e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase PIN PF01850.21 gi|119872971|ref|YP_930978.1| - 1.9e-07 31.6 0.2 7.6e-07 29.7 0.2 2.1 1 1 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|119872971|ref|YP_930978.1| - 8.2e-06 26.4 3.6 1.1e-05 25.9 3.6 1.2 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|119872971|ref|YP_930978.1| - 0.022 15.5 0.0 0.031 15.0 0.0 1.4 1 1 0 1 1 1 0 PIN domain OrfB_Zn_ribbon PF07282.11 gi|119872972|ref|YP_930979.1| - 2.9e-20 71.9 0.2 5.3e-20 71.1 0.2 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|119872972|ref|YP_930979.1| - 0.00018 21.7 2.0 0.0004 20.6 0.1 2.5 2 1 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|119872972|ref|YP_930979.1| - 0.0031 17.8 0.3 0.0063 16.8 0.3 1.5 1 0 0 1 1 1 1 C1 domain Imm49 PF15575.6 gi|119872972|ref|YP_930979.1| - 0.035 13.9 0.0 0.078 12.7 0.0 1.5 1 0 0 1 1 1 0 Immunity protein 49 adh_short PF00106.25 gi|119872972|ref|YP_930979.1| - 0.077 12.4 0.0 0.21 11.0 0.0 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Band_7 PF01145.25 gi|119872972|ref|YP_930979.1| - 0.098 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 SPFH domain / Band 7 family AAA_21 PF13304.6 gi|119872973|ref|YP_930980.1| - 6.7e-13 49.1 0.1 8.9e-13 48.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119872973|ref|YP_930980.1| - 4.1e-11 43.2 0.1 5.1e-11 42.9 0.1 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.6 gi|119872973|ref|YP_930980.1| - 0.082 11.5 0.0 0.096 11.3 0.0 1.0 1 0 0 1 1 1 0 AAA domain DUF3226 PF11536.8 gi|119872974|ref|YP_930981.1| - 0.077 12.6 0.0 0.091 12.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3226) ATP-synt_ab PF00006.25 gi|119872974|ref|YP_930981.1| - 0.15 11.6 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Peptidase_C11 PF03415.14 gi|119872975|ref|YP_930982.1| - 0.13 11.6 0.0 0.15 11.4 0.0 1.1 1 0 0 1 1 1 0 Clostripain family DUF3198 PF11433.8 gi|119872977|ref|YP_930984.1| - 0.05 13.5 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) AAA_15 PF13175.6 gi|119872979|ref|YP_930986.1| - 3.6e-16 59.8 0.0 2.1e-09 37.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|119872979|ref|YP_930986.1| - 3.6e-10 40.1 0.2 0.00019 21.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|119872979|ref|YP_930986.1| - 0.0085 15.4 0.0 0.021 14.1 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|119872979|ref|YP_930986.1| - 0.017 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119872979|ref|YP_930986.1| - 0.017 15.6 0.0 0.03 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIN_3 PF13470.6 gi|119872980|ref|YP_930987.1| - 2.1e-05 25.3 0.2 3.3e-05 24.6 0.2 1.3 1 0 0 1 1 1 1 PIN domain Hormone_1 PF00103.20 gi|119872980|ref|YP_930987.1| - 0.002 17.9 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Somatotropin hormone family DUF43 PF01861.16 gi|119872980|ref|YP_930987.1| - 0.028 13.7 0.0 0.038 13.2 0.0 1.2 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain RdRP_5 PF07925.11 gi|119872980|ref|YP_930987.1| - 0.053 10.9 0.0 0.083 10.3 0.0 1.2 1 1 0 1 1 1 0 Reovirus RNA-dependent RNA polymerase lambda 3 NTP_transferase PF00483.23 gi|119872981|ref|YP_930988.1| - 3e-34 118.7 0.0 3.5e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119872981|ref|YP_930988.1| - 8e-14 52.3 0.0 1.2e-13 51.8 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|119872981|ref|YP_930988.1| - 0.00025 20.9 0.0 0.00095 19.0 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|119872981|ref|YP_930988.1| - 0.029 14.2 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 GDP_Man_Dehyd PF16363.5 gi|119872982|ref|YP_930989.1| - 2e-73 247.7 0.0 3.6e-69 233.7 0.0 3.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|119872982|ref|YP_930989.1| - 2.4e-53 181.1 0.0 3.3e-53 180.6 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|119872982|ref|YP_930989.1| - 2.6e-09 36.7 0.0 4.4e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|119872982|ref|YP_930989.1| - 6.8e-09 35.1 0.0 1.9e-08 33.6 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|119872982|ref|YP_930989.1| - 1.1e-08 34.5 0.0 2.5e-07 30.1 0.0 2.1 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|119872982|ref|YP_930989.1| - 2.1e-06 27.1 0.0 1.7e-05 24.1 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|119872982|ref|YP_930989.1| - 0.00053 19.6 0.1 0.00083 19.0 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|119872982|ref|YP_930989.1| - 0.0013 18.2 0.5 0.029 13.8 0.1 2.6 2 1 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|119872982|ref|YP_930989.1| - 0.0087 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|119872982|ref|YP_930989.1| - 0.082 12.8 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 KR domain Methyltransf_21 PF05050.12 gi|119872983|ref|YP_930990.1| - 4.5e-13 49.6 0.5 6.8e-13 49.0 0.5 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|119872983|ref|YP_930990.1| - 3.6e-07 30.1 0.6 3.6e-07 30.1 0.6 2.2 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_18 PF12847.7 gi|119872983|ref|YP_930990.1| - 0.042 13.8 0.0 0.097 12.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|119872983|ref|YP_930990.1| - 0.082 12.3 0.2 0.17 11.2 0.2 1.5 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Glycos_transf_1 PF00534.20 gi|119872984|ref|YP_930991.1| - 4.4e-43 146.8 0.0 8.5e-43 145.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872984|ref|YP_930991.1| - 3.7e-28 98.6 0.0 8.7e-28 97.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872984|ref|YP_930991.1| - 1.9e-12 47.5 0.0 4.3e-12 46.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|119872984|ref|YP_930991.1| - 2.3e-11 43.9 0.0 4e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|119872984|ref|YP_930991.1| - 0.0014 17.4 0.1 0.0027 16.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase family 20 Glycogen_syn PF05693.13 gi|119872984|ref|YP_930991.1| - 0.065 11.8 0.1 0.52 8.8 0.1 2.0 2 0 0 2 2 2 0 Glycogen synthase Glycos_transf_2 PF00535.26 gi|119872986|ref|YP_930993.1| - 1.1e-24 87.1 0.0 1.5e-24 86.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|119872986|ref|YP_930993.1| - 9.5e-15 55.1 0.0 1.3e-14 54.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|119872986|ref|YP_930993.1| - 0.00018 21.1 0.0 0.00025 20.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|119872986|ref|YP_930993.1| - 0.0049 16.3 0.0 0.018 14.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_1 PF00534.20 gi|119872987|ref|YP_930994.1| - 2.6e-39 134.5 0.0 3.5e-38 130.8 0.0 2.5 1 1 2 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872987|ref|YP_930994.1| - 7.9e-31 107.3 0.0 2.2e-30 105.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872987|ref|YP_930994.1| - 1.5e-18 67.4 0.0 2.6e-18 66.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|119872987|ref|YP_930994.1| - 2.5e-11 43.8 0.0 6.2e-11 42.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|119872987|ref|YP_930994.1| - 7.7e-07 29.7 0.0 8.7e-06 26.3 0.0 2.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain TBPIP_N PF15517.6 gi|119872987|ref|YP_930994.1| - 0.094 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 TBP-interacting protein N-terminus Glycos_transf_1 PF00534.20 gi|119872988|ref|YP_930995.1| - 7.1e-31 107.0 0.0 2.2e-30 105.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872988|ref|YP_930995.1| - 5.9e-22 78.5 0.1 1.4e-21 77.3 0.1 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|119872988|ref|YP_930995.1| - 3.3e-09 37.0 0.0 5.4e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872988|ref|YP_930995.1| - 2.3e-05 24.5 0.1 0.00076 19.5 0.0 2.9 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|119872989|ref|YP_930996.1| - 4e-29 101.3 0.0 6.6e-29 100.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872989|ref|YP_930996.1| - 3.8e-24 85.6 0.0 7.6e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872989|ref|YP_930996.1| - 5.5e-09 36.3 0.1 1.7e-08 34.6 0.0 1.9 3 0 0 3 3 3 1 Glycosyltransferase Family 4 DUF3880 PF12996.7 gi|119872989|ref|YP_930996.1| - 1.2e-05 25.3 0.0 3.7e-05 23.7 0.0 1.8 1 0 0 1 1 1 1 DUF based on E. rectale Gene description (DUF3880) Glyco_trans_1_2 PF13524.6 gi|119872989|ref|YP_930996.1| - 3.2e-05 24.2 0.0 9.6e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|119872989|ref|YP_930996.1| - 0.0021 18.5 0.0 0.0032 17.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|119872991|ref|YP_930998.1| - 1.7e-22 79.8 0.0 2.6e-22 79.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|119872991|ref|YP_930998.1| - 7.1e-21 75.0 0.0 1.4e-20 74.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|119872991|ref|YP_930998.1| - 8e-09 35.7 1.9 1.3e-08 35.0 0.7 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|119872991|ref|YP_930998.1| - 8.6e-07 29.5 8.6 1.2e-05 25.9 4.7 2.6 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|119872991|ref|YP_930998.1| - 0.00018 21.8 0.0 0.00035 20.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 THF_DHG_CYH_C PF02882.19 gi|119872991|ref|YP_930998.1| - 0.093 12.0 0.0 0.16 11.3 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CbiA PF01656.23 gi|119872991|ref|YP_930998.1| - 0.16 12.0 0.0 0.29 11.2 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Met_10 PF02475.16 gi|119872992|ref|YP_930999.1| - 0.098 12.4 0.0 0.1 12.4 0.0 1.0 1 0 0 1 1 1 0 Met-10+ like-protein PCMT PF01135.19 gi|119872992|ref|YP_930999.1| - 0.15 11.8 0.0 0.16 11.7 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_21 PF05050.12 gi|119872993|ref|YP_931000.1| - 0.00013 22.0 0.1 0.00018 21.6 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Glyco_trans_1_2 PF13524.6 gi|119872994|ref|YP_931001.1| - 1.2e-21 76.9 0.3 1.2e-21 76.9 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF3880 PF12996.7 gi|119872994|ref|YP_931001.1| - 0.075 13.1 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) NTP_transferase PF00483.23 gi|119872995|ref|YP_931002.1| - 7.6e-19 68.3 0.0 2.7e-18 66.5 0.0 1.8 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|119872995|ref|YP_931002.1| - 0.00028 21.3 0.4 0.00041 20.7 0.4 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Epimerase PF01370.21 gi|119872996|ref|YP_931003.1| - 8.5e-43 146.5 0.0 1e-42 146.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|119872996|ref|YP_931003.1| - 2.1e-42 145.7 0.0 4.7e-42 144.6 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|119872996|ref|YP_931003.1| - 8.1e-10 38.3 0.0 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|119872996|ref|YP_931003.1| - 0.00012 21.4 0.0 0.0052 16.0 0.0 2.6 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|119872996|ref|YP_931003.1| - 0.014 14.8 0.0 0.61 9.5 0.0 2.7 3 0 0 3 3 3 0 short chain dehydrogenase NAD_binding_4 PF07993.12 gi|119872996|ref|YP_931003.1| - 0.019 14.1 0.0 0.19 10.8 0.0 2.1 2 0 0 2 2 2 0 Male sterility protein UDPG_MGDP_dh_N PF03721.14 gi|119872997|ref|YP_931004.1| - 4e-57 192.8 0.0 5.8e-57 192.3 0.0 1.2 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|119872997|ref|YP_931004.1| - 2.8e-33 114.0 0.0 5.3e-33 113.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|119872997|ref|YP_931004.1| - 1.3e-26 93.1 0.0 3.5e-24 85.2 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|119872997|ref|YP_931004.1| - 0.00013 22.1 0.0 0.085 13.0 0.0 2.4 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|119872997|ref|YP_931004.1| - 0.0044 17.2 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|119872997|ref|YP_931004.1| - 0.016 15.1 0.1 0.081 12.8 0.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|119872997|ref|YP_931004.1| - 0.032 13.6 0.3 8 5.8 0.0 2.8 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DmpG_comm PF07836.11 gi|119872997|ref|YP_931004.1| - 0.095 12.2 0.3 12 5.5 0.0 2.7 2 0 0 2 2 2 0 DmpG-like communication domain Sulfatase PF00884.23 gi|119872998|ref|YP_931005.1| - 4.8e-10 39.3 0.0 7.1e-06 25.6 0.0 2.3 2 0 0 2 2 2 2 Sulfatase Phosphodiest PF01663.22 gi|119872998|ref|YP_931005.1| - 2.6e-05 24.0 0.0 0.12 12.0 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|119872998|ref|YP_931005.1| - 0.029 13.0 0.0 0.038 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) PglZ PF08665.12 gi|119872998|ref|YP_931005.1| - 0.14 12.2 0.1 0.86 9.7 0.0 2.0 2 0 0 2 2 2 0 PglZ domain RHH_1 PF01402.21 gi|119872999|ref|YP_931006.1| - 0.0022 17.9 0.1 0.0022 17.9 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.15 gi|119872999|ref|YP_931006.1| - 0.025 14.4 0.1 0.058 13.2 0.1 1.6 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region TauE PF01925.19 gi|119873000|ref|YP_931007.1| - 4.1e-21 75.7 38.2 4.8e-21 75.5 38.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE APS_kinase PF01583.20 gi|119873001|ref|YP_931008.1| - 6.2e-56 188.7 0.0 8.2e-56 188.3 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|119873001|ref|YP_931008.1| - 4e-09 36.8 0.0 5.8e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|119873001|ref|YP_931008.1| - 5.3e-07 29.4 0.0 8.1e-07 28.8 0.0 1.2 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|119873001|ref|YP_931008.1| - 0.0037 17.7 0.0 0.0075 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|119873001|ref|YP_931008.1| - 0.0069 15.7 0.0 0.009 15.3 0.0 1.2 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_18 PF13238.6 gi|119873001|ref|YP_931008.1| - 0.018 15.6 0.0 0.025 15.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|119873001|ref|YP_931008.1| - 0.019 14.2 0.1 0.038 13.3 0.1 1.4 1 1 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|119873001|ref|YP_931008.1| - 0.026 14.5 0.1 0.41 10.5 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_16 PF13191.6 gi|119873001|ref|YP_931008.1| - 0.039 14.3 0.2 0.059 13.8 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|119873001|ref|YP_931008.1| - 0.073 13.2 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 Shikimate kinase Thymidylate_kin PF02223.17 gi|119873001|ref|YP_931008.1| - 0.13 11.9 0.2 0.23 11.1 0.2 1.6 1 1 0 1 1 1 0 Thymidylate kinase AAA PF00004.29 gi|119873001|ref|YP_931008.1| - 0.13 12.7 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|119873001|ref|YP_931008.1| - 0.15 11.8 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Phosphodiest PF01663.22 gi|119873002|ref|YP_931009.1| - 1.7e-46 159.5 0.4 2.2e-46 159.1 0.4 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|119873002|ref|YP_931009.1| - 0.0048 16.3 0.0 0.094 12.1 0.0 2.3 1 1 0 1 1 1 1 Sulfatase DUF1104 PF06518.11 gi|119873002|ref|YP_931009.1| - 0.17 12.3 0.6 0.47 10.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1104) ATP-sulfurylase PF01747.17 gi|119873003|ref|YP_931010.1| - 4.2e-68 229.0 0.0 5.7e-68 228.6 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|119873003|ref|YP_931010.1| - 3.4e-35 121.1 0.0 5.5e-35 120.4 0.0 1.3 1 0 0 1 1 1 1 PUA-like domain KH_10 PF17905.1 gi|119873003|ref|YP_931010.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.4 1 0 0 1 1 1 0 GLD-3 KH domain 5 DUF1967 PF09269.11 gi|119873003|ref|YP_931010.1| - 0.12 12.3 0.2 0.4 10.7 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) TPR_14 PF13428.6 gi|119873004|ref|YP_931011.1| - 0.13 13.2 1.7 1.6 9.7 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat NPV_P10 PF05531.12 gi|119873005|ref|YP_931012.1| - 5e-07 30.1 2.2 5e-07 30.1 2.2 1.8 2 0 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Snapin_Pallidin PF14712.6 gi|119873005|ref|YP_931012.1| - 9.4e-06 26.0 0.5 0.002 18.5 0.0 2.1 1 1 1 2 2 2 1 Snapin/Pallidin HSBP1 PF06825.12 gi|119873005|ref|YP_931012.1| - 1.3e-05 24.9 4.2 0.01 15.7 0.9 2.7 1 1 1 2 2 2 2 Heat shock factor binding protein 1 XhlA PF10779.9 gi|119873005|ref|YP_931012.1| - 0.00026 21.1 2.8 0.011 15.9 2.7 2.3 1 1 0 1 1 1 1 Haemolysin XhlA FlxA PF14282.6 gi|119873005|ref|YP_931012.1| - 0.00027 20.9 0.9 0.0004 20.3 0.9 1.2 1 0 0 1 1 1 1 FlxA-like protein ABC_tran_CTD PF16326.5 gi|119873005|ref|YP_931012.1| - 0.00031 20.9 0.8 0.00093 19.4 0.8 1.8 1 1 0 1 1 1 1 ABC transporter C-terminal domain Baculo_PEP_C PF04513.12 gi|119873005|ref|YP_931012.1| - 0.00069 19.7 0.4 0.001 19.1 0.4 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|119873005|ref|YP_931012.1| - 0.00087 19.6 0.3 1.3 9.5 0.0 2.4 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) DivIC PF04977.15 gi|119873005|ref|YP_931012.1| - 0.0015 18.3 2.3 0.14 11.9 0.1 2.4 1 1 1 2 2 2 1 Septum formation initiator DUF1664 PF07889.12 gi|119873005|ref|YP_931012.1| - 0.0017 18.4 2.1 0.0034 17.4 0.8 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF1515 PF07439.11 gi|119873005|ref|YP_931012.1| - 0.0021 18.1 0.3 0.0021 18.1 0.3 1.4 2 0 0 2 2 1 1 Protein of unknown function (DUF1515) DUF3552 PF12072.8 gi|119873005|ref|YP_931012.1| - 0.0033 16.9 0.8 0.004 16.6 0.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) UPF0184 PF03670.13 gi|119873005|ref|YP_931012.1| - 0.0042 17.4 1.1 1.4 9.4 0.4 2.2 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0184) DUF948 PF06103.11 gi|119873005|ref|YP_931012.1| - 0.0059 16.8 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) Phasin PF05597.11 gi|119873005|ref|YP_931012.1| - 0.0067 16.4 1.6 0.36 10.8 0.1 2.2 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Prefoldin_2 PF01920.20 gi|119873005|ref|YP_931012.1| - 0.0069 16.3 0.8 0.11 12.4 0.2 2.3 1 1 1 2 2 2 1 Prefoldin subunit CLZ PF16526.5 gi|119873005|ref|YP_931012.1| - 0.0091 16.3 0.1 0.019 15.3 0.1 1.6 1 0 0 1 1 1 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Transcrip_act PF04949.13 gi|119873005|ref|YP_931012.1| - 0.012 15.4 1.0 0.015 15.1 1.0 1.4 1 1 0 1 1 1 0 Transcriptional activator Med9 PF07544.13 gi|119873005|ref|YP_931012.1| - 0.015 15.4 1.1 0.024 14.7 1.1 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Apolipoprotein PF01442.18 gi|119873005|ref|YP_931012.1| - 0.015 15.2 2.4 0.016 15.1 0.5 1.8 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain TBCC_N PF16752.5 gi|119873005|ref|YP_931012.1| - 0.016 15.6 0.4 0.11 12.9 0.4 2.2 1 1 0 1 1 1 0 Tubulin-specific chaperone C N-terminal domain Matrilin_ccoil PF10393.9 gi|119873005|ref|YP_931012.1| - 0.016 15.0 1.6 1.4 8.8 0.1 2.6 2 1 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Spectrin PF00435.21 gi|119873005|ref|YP_931012.1| - 0.018 15.5 0.3 0.022 15.3 0.3 1.3 1 1 0 1 1 1 0 Spectrin repeat DUF3450 PF11932.8 gi|119873005|ref|YP_931012.1| - 0.02 14.2 0.3 0.035 13.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4407 PF14362.6 gi|119873005|ref|YP_931012.1| - 0.02 14.2 0.1 0.021 14.2 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) MscS_porin PF12795.7 gi|119873005|ref|YP_931012.1| - 0.023 14.3 3.7 0.34 10.4 0.5 1.8 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain YvrJ PF12841.7 gi|119873005|ref|YP_931012.1| - 0.025 14.1 0.5 1.1 8.8 0.1 2.5 2 0 0 2 2 2 0 YvrJ protein family Uds1 PF15456.6 gi|119873005|ref|YP_931012.1| - 0.027 14.6 0.8 0.55 10.4 0.6 2.2 1 1 1 2 2 2 0 Up-regulated During Septation CorA PF01544.18 gi|119873005|ref|YP_931012.1| - 0.028 13.7 4.2 0.14 11.5 4.2 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF2203 PF09969.9 gi|119873005|ref|YP_931012.1| - 0.029 15.1 0.4 0.045 14.5 0.4 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) TPR_MLP1_2 PF07926.12 gi|119873005|ref|YP_931012.1| - 0.031 14.3 0.0 0.05 13.7 0.0 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4988 PF16378.5 gi|119873005|ref|YP_931012.1| - 0.032 13.9 2.5 1.6 8.4 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function TMF_DNA_bd PF12329.8 gi|119873005|ref|YP_931012.1| - 0.033 14.2 2.1 6.5 6.8 0.2 2.9 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Allexi_40kDa PF05549.11 gi|119873005|ref|YP_931012.1| - 0.034 13.7 0.2 0.037 13.5 0.2 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein SKA2 PF16740.5 gi|119873005|ref|YP_931012.1| - 0.036 13.8 0.1 0.087 12.6 0.1 1.5 1 1 0 1 1 1 0 Spindle and kinetochore-associated protein 2 ApoLp-III PF07464.11 gi|119873005|ref|YP_931012.1| - 0.037 14.1 0.1 0.097 12.8 0.0 1.6 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF16 PF01519.16 gi|119873005|ref|YP_931012.1| - 0.038 14.5 0.7 0.071 13.6 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF16 RmuC PF02646.16 gi|119873005|ref|YP_931012.1| - 0.039 13.1 0.0 0.067 12.3 0.0 1.3 1 1 0 1 1 1 0 RmuC family DUF5098 PF17023.5 gi|119873005|ref|YP_931012.1| - 0.041 12.8 0.0 0.05 12.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF5098) Prefoldin PF02996.17 gi|119873005|ref|YP_931012.1| - 0.042 13.8 2.5 1.7 8.6 0.3 2.3 1 1 1 2 2 2 0 Prefoldin subunit DUF2730 PF10805.8 gi|119873005|ref|YP_931012.1| - 0.042 13.9 0.5 1.7 8.8 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Laminin_II PF06009.12 gi|119873005|ref|YP_931012.1| - 0.049 13.6 1.5 0.12 12.3 0.5 1.9 1 1 1 2 2 2 0 Laminin Domain II KxDL PF10241.9 gi|119873005|ref|YP_931012.1| - 0.056 13.7 0.2 0.1 12.9 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein MbeD_MobD PF04899.12 gi|119873005|ref|YP_931012.1| - 0.069 13.3 0.4 0.42 10.8 0.1 2.1 1 1 1 2 2 2 0 MbeD/MobD like FliD_C PF07195.12 gi|119873005|ref|YP_931012.1| - 0.07 12.5 0.2 0.13 11.7 0.2 1.5 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.6 gi|119873005|ref|YP_931012.1| - 0.071 11.8 0.1 0.08 11.6 0.1 1.1 1 0 0 1 1 1 0 AAA domain HalX PF08663.10 gi|119873005|ref|YP_931012.1| - 0.072 13.4 6.7 1.4 9.3 3.7 2.7 2 1 0 2 2 1 0 HalX domain DUF2802 PF10975.8 gi|119873005|ref|YP_931012.1| - 0.074 13.2 1.0 3.2 7.9 1.0 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) DUF4164 PF13747.6 gi|119873005|ref|YP_931012.1| - 0.078 13.3 6.4 0.07 13.4 4.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Spc7 PF08317.11 gi|119873005|ref|YP_931012.1| - 0.083 11.8 0.6 0.093 11.6 0.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein COG2 PF06148.11 gi|119873005|ref|YP_931012.1| - 0.091 12.8 0.5 0.18 11.9 0.2 1.7 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fmp27_WPPW PF10359.9 gi|119873005|ref|YP_931012.1| - 0.094 11.6 0.1 0.11 11.3 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_2 PF07716.15 gi|119873005|ref|YP_931012.1| - 0.1 12.7 0.9 12 6.0 0.1 2.9 2 1 1 3 3 3 0 Basic region leucine zipper BLOC1_2 PF10046.9 gi|119873005|ref|YP_931012.1| - 0.1 12.9 0.7 3.4 8.0 0.1 2.1 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3782 PF12644.7 gi|119873005|ref|YP_931012.1| - 0.15 12.2 1.8 1.4 9.1 0.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3782) V_ATPase_I PF01496.19 gi|119873005|ref|YP_931012.1| - 0.17 9.8 0.0 0.16 9.8 0.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2205 PF10224.9 gi|119873005|ref|YP_931012.1| - 0.19 11.8 4.6 4.4 7.4 1.6 3.0 1 1 0 2 2 2 0 Short coiled-coil protein TMPIT PF07851.13 gi|119873005|ref|YP_931012.1| - 0.19 10.9 0.0 0.21 10.8 0.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein WASH_WAHD PF11945.8 gi|119873005|ref|YP_931012.1| - 0.19 11.2 2.2 0.6 9.6 2.2 1.8 1 1 0 1 1 1 0 WAHD domain of WASH complex Fib_alpha PF08702.10 gi|119873005|ref|YP_931012.1| - 0.22 11.7 1.2 0.7 10.1 1.2 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family HrpB7 PF09486.10 gi|119873005|ref|YP_931012.1| - 0.24 11.8 8.2 0.27 11.6 4.8 2.2 2 1 0 2 2 1 0 Bacterial type III secretion protein (HrpB7) CdvA PF18822.1 gi|119873005|ref|YP_931012.1| - 0.3 10.9 4.4 0.26 11.1 1.9 2.1 2 1 0 2 2 1 0 CdvA-like coiled-coil domain Prefoldin_3 PF13758.6 gi|119873005|ref|YP_931012.1| - 0.44 10.6 3.3 2.4 8.3 3.3 2.2 1 1 0 1 1 1 0 Prefoldin subunit Lambda_CIII PF02061.16 gi|119873005|ref|YP_931012.1| - 0.66 10.1 3.4 0.97 9.5 0.1 2.6 2 1 0 2 2 2 0 Lambda Phage CIII CCDC-167 PF15188.6 gi|119873005|ref|YP_931012.1| - 0.99 9.8 5.9 1.2 9.5 2.9 2.3 2 1 0 2 2 1 0 Coiled-coil domain-containing protein 167 SlyX PF04102.12 gi|119873005|ref|YP_931012.1| - 1.6 9.4 6.8 3.1 8.5 0.4 2.7 2 1 1 3 3 2 0 SlyX PaREP1 PF05942.11 gi|119873006|ref|YP_931013.1| - 1.5e-30 105.4 1.6 1.5e-30 105.4 1.6 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family AAA_15 PF13175.6 gi|119873008|ref|YP_931015.1| - 1.6e-10 41.2 0.0 7.3e-06 25.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|119873008|ref|YP_931015.1| - 2.7e-08 34.0 0.0 2.5e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF2813 PF11398.8 gi|119873008|ref|YP_931015.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA PF00004.29 gi|119873008|ref|YP_931015.1| - 0.19 12.1 0.0 0.35 11.3 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PDDEXK_9 PF08011.11 gi|119873009|ref|YP_931016.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PhoU PF01895.19 gi|119873010|ref|YP_931017.1| - 5.1e-20 71.7 8.4 6e-11 42.7 0.9 2.2 2 0 0 2 2 2 2 PhoU domain Helicase_C_3 PF13625.6 gi|119873010|ref|YP_931017.1| - 0.035 14.3 0.4 0.08 13.1 0.2 1.7 2 0 0 2 2 2 0 Helicase conserved C-terminal domain DUF3562 PF12085.8 gi|119873010|ref|YP_931017.1| - 0.085 12.5 1.1 0.66 9.6 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) ABC_tran PF00005.27 gi|119873011|ref|YP_931018.1| - 8.5e-29 100.8 0.0 1.2e-28 100.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873011|ref|YP_931018.1| - 1.9e-11 44.3 0.3 5e-07 29.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873011|ref|YP_931018.1| - 4.9e-05 22.9 0.1 0.12 11.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.6 gi|119873011|ref|YP_931018.1| - 0.00015 22.1 0.6 0.00071 19.9 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119873011|ref|YP_931018.1| - 0.0013 19.0 0.5 0.49 10.7 0.1 2.2 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|119873011|ref|YP_931018.1| - 0.0049 16.6 0.3 0.045 13.5 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|119873011|ref|YP_931018.1| - 0.0058 16.4 0.0 0.53 9.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain RecA PF00154.21 gi|119873011|ref|YP_931018.1| - 0.0073 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA PF00004.29 gi|119873011|ref|YP_931018.1| - 0.01 16.2 0.3 0.1 13.0 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|119873011|ref|YP_931018.1| - 0.011 15.4 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|119873011|ref|YP_931018.1| - 0.019 15.2 0.1 0.1 12.8 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 gi|119873011|ref|YP_931018.1| - 0.023 14.3 0.0 0.039 13.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|119873011|ref|YP_931018.1| - 0.034 14.7 0.1 0.057 13.9 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|119873011|ref|YP_931018.1| - 0.036 14.5 0.0 0.056 13.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|119873011|ref|YP_931018.1| - 0.051 13.1 0.1 0.1 12.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119873012|ref|YP_931019.1| - 1.3e-28 100.2 0.0 1.8e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|119873012|ref|YP_931019.1| - 4.2e-07 29.7 0.1 8.1e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|119873012|ref|YP_931019.1| - 6.5e-07 29.4 3.9 0.00025 21.0 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873012|ref|YP_931019.1| - 7.7e-06 25.5 0.3 0.012 15.1 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119873012|ref|YP_931019.1| - 9.5e-05 22.7 0.3 0.0024 18.2 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119873012|ref|YP_931019.1| - 0.00021 21.8 0.0 0.00033 21.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119873012|ref|YP_931019.1| - 0.00075 19.2 0.2 0.0017 18.0 0.0 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873012|ref|YP_931019.1| - 0.00079 19.9 0.1 0.0017 18.8 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|119873012|ref|YP_931019.1| - 0.0011 17.8 0.2 0.32 9.8 0.2 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|119873012|ref|YP_931019.1| - 0.0013 18.5 0.1 0.0064 16.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|119873012|ref|YP_931019.1| - 0.0022 17.8 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|119873012|ref|YP_931019.1| - 0.02 15.0 0.0 0.5 10.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|119873012|ref|YP_931019.1| - 0.029 13.6 0.2 0.18 11.0 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|119873012|ref|YP_931019.1| - 0.038 13.0 0.2 0.11 11.5 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.29 gi|119873012|ref|YP_931019.1| - 0.05 14.0 0.1 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|119873012|ref|YP_931019.1| - 0.052 13.4 0.1 0.094 12.6 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|119873012|ref|YP_931019.1| - 0.053 13.1 1.1 0.35 10.4 0.1 2.3 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|119873012|ref|YP_931019.1| - 0.081 12.5 0.1 0.14 11.7 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|119873012|ref|YP_931019.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|119873012|ref|YP_931019.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119873012|ref|YP_931019.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|119873012|ref|YP_931019.1| - 0.14 11.7 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|119873012|ref|YP_931019.1| - 0.25 11.7 0.3 1.3 9.3 0.0 2.0 2 1 1 3 3 3 0 AAA domain DUF3584 PF12128.8 gi|119873012|ref|YP_931019.1| - 0.26 8.8 0.1 0.35 8.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) BPD_transp_2 PF02653.16 gi|119873013|ref|YP_931020.1| - 9.2e-33 113.5 43.9 1.2e-32 113.1 43.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|119873014|ref|YP_931021.1| - 6.3e-32 110.8 46.7 7.9e-32 110.5 46.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Peripla_BP_6 PF13458.6 gi|119873015|ref|YP_931022.1| - 2.1e-57 195.3 3.8 3.1e-57 194.8 3.8 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|119873015|ref|YP_931022.1| - 8.5e-16 58.0 0.0 1.5e-15 57.2 0.0 1.3 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|119873015|ref|YP_931022.1| - 1.7e-15 56.9 0.4 1.8e-10 40.4 0.1 2.2 2 1 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.12 gi|119873015|ref|YP_931022.1| - 9.4e-05 21.8 0.2 0.00015 21.1 0.2 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 gi|119873015|ref|YP_931022.1| - 0.002 17.8 0.3 0.019 14.5 0.1 2.5 3 0 0 3 3 3 1 Periplasmic binding protein domain ABC_tran PF00005.27 gi|119873016|ref|YP_931023.1| - 1.6e-31 109.6 0.0 2.2e-31 109.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873016|ref|YP_931023.1| - 2e-09 37.7 0.0 0.0012 18.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873016|ref|YP_931023.1| - 9.4e-08 31.7 0.0 0.00069 19.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|119873016|ref|YP_931023.1| - 4.3e-06 27.1 0.0 7.6e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119873016|ref|YP_931023.1| - 7.1e-05 22.5 0.0 0.00022 20.9 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873016|ref|YP_931023.1| - 0.00034 21.0 0.2 0.0013 19.1 0.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|119873016|ref|YP_931023.1| - 0.002 18.0 0.0 0.0036 17.2 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|119873016|ref|YP_931023.1| - 0.0028 18.2 0.0 0.0042 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119873016|ref|YP_931023.1| - 0.012 15.3 0.0 0.037 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|119873016|ref|YP_931023.1| - 0.013 15.3 0.0 0.2 11.3 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|119873016|ref|YP_931023.1| - 0.027 14.0 0.7 0.088 12.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|119873016|ref|YP_931023.1| - 0.062 12.2 0.0 0.098 11.5 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain AAA_18 PF13238.6 gi|119873016|ref|YP_931023.1| - 0.089 13.3 0.0 0.19 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|119873016|ref|YP_931023.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_24 PF13479.6 gi|119873016|ref|YP_931023.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|119873017|ref|YP_931024.1| - 2.4e-09 37.2 14.9 2.4e-09 37.2 14.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|119873018|ref|YP_931025.1| - 7.5e-13 48.6 18.6 7.5e-13 48.6 18.6 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|119873019|ref|YP_931026.1| - 7.3e-45 153.8 0.0 9.1e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|119873019|ref|YP_931026.1| - 2.1e-07 31.2 0.5 3.5e-07 30.5 0.5 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|119873019|ref|YP_931026.1| - 1.1e-06 27.9 0.0 3.4e-06 26.3 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain FixQ PF05545.11 gi|119873019|ref|YP_931026.1| - 0.2 11.7 0.2 0.2 11.7 0.2 2.6 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ adh_short PF00106.25 gi|119873020|ref|YP_931027.1| - 8.1e-47 159.2 0.0 9.4e-47 159.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|119873020|ref|YP_931027.1| - 2.1e-30 106.0 0.0 2.6e-30 105.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|119873020|ref|YP_931027.1| - 8.2e-09 35.6 0.0 1e-08 35.3 0.0 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|119873020|ref|YP_931027.1| - 0.00048 19.7 0.1 0.00064 19.2 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|119873020|ref|YP_931027.1| - 0.0013 18.7 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 NAD(P)H-binding DUF1776 PF08643.10 gi|119873020|ref|YP_931027.1| - 0.0016 17.9 0.0 0.0031 16.9 0.0 1.6 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Polysacc_synt_2 PF02719.15 gi|119873020|ref|YP_931027.1| - 0.15 11.2 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein OrfB_Zn_ribbon PF07282.11 gi|119873021|ref|YP_931028.1| - 1.3e-10 41.1 0.0 2.5e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119873021|ref|YP_931028.1| - 0.00013 21.5 3.7 0.0003 20.4 3.7 1.6 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain OrfB_IS605 PF01385.19 gi|119873021|ref|YP_931028.1| - 0.00078 19.7 1.5 0.0016 18.7 1.5 1.6 1 0 0 1 1 1 1 Probable transposase NRDD PF13597.6 gi|119873021|ref|YP_931028.1| - 0.004 16.0 0.0 0.0064 15.3 0.0 1.2 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase Auto_anti-p27 PF06677.12 gi|119873021|ref|YP_931028.1| - 0.0053 16.9 2.7 0.0095 16.1 2.7 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|119873021|ref|YP_931028.1| - 0.0057 16.3 0.6 0.012 15.3 0.6 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|119873021|ref|YP_931028.1| - 0.018 15.1 0.1 0.03 14.4 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|119873021|ref|YP_931028.1| - 0.027 14.1 3.0 0.06 13.0 3.0 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|119873021|ref|YP_931028.1| - 0.054 13.5 0.5 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|119873021|ref|YP_931028.1| - 0.06 13.3 0.6 0.098 12.6 0.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_L37e PF01907.19 gi|119873021|ref|YP_931028.1| - 0.066 13.4 0.4 0.14 12.3 0.4 1.5 1 0 0 1 1 1 0 Ribosomal protein L37e FliH PF02108.16 gi|119873021|ref|YP_931028.1| - 0.082 13.0 0.7 0.21 11.7 0.2 1.9 2 0 0 2 2 2 0 Flagellar assembly protein FliH BLOC1_2 PF10046.9 gi|119873021|ref|YP_931028.1| - 0.089 13.1 0.4 0.64 10.3 0.1 2.3 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 zf-ribbon_3 PF13248.6 gi|119873021|ref|YP_931028.1| - 0.15 11.5 5.2 2.4 7.7 5.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|119873021|ref|YP_931028.1| - 0.2 11.8 1.6 0.37 11.0 0.2 2.1 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) TF_Zn_Ribbon PF08271.12 gi|119873021|ref|YP_931028.1| - 0.28 10.7 1.5 0.96 9.0 1.5 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding PSK_trans_fac PF07704.11 gi|119873021|ref|YP_931028.1| - 0.39 11.5 0.1 0.39 11.5 0.1 2.9 3 0 0 3 3 3 0 Rv0623-like transcription factor Zn-ribbon_8 PF09723.10 gi|119873021|ref|YP_931028.1| - 0.84 9.8 3.7 13 6.0 3.7 2.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|119873021|ref|YP_931028.1| - 1.3 8.8 6.3 0.78 9.6 0.7 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-RING_7 PF02591.15 gi|119873021|ref|YP_931028.1| - 1.5 9.1 4.0 24 5.2 4.0 2.8 1 1 0 1 1 1 0 C4-type zinc ribbon domain DUF1451 PF07295.11 gi|119873021|ref|YP_931028.1| - 6.6 6.8 5.7 2.1 8.4 0.5 2.5 3 0 0 3 3 3 0 Zinc-ribbon containing domain DUF86 PF01934.17 gi|119873023|ref|YP_931030.1| - 4.9e-16 58.7 0.0 5.5e-16 58.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|119873024|ref|YP_931031.1| - 6.9e-05 22.9 0.0 0.00011 22.2 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|119873025|ref|YP_931032.1| - 4.6e-11 42.6 0.0 6.1e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 TRI5 PF06330.11 gi|119873025|ref|YP_931032.1| - 0.2 10.5 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 Trichodiene synthase (TRI5) Polbeta PF18765.1 gi|119873026|ref|YP_931033.1| - 9.5e-09 35.2 0.0 1.2e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase PIN PF01850.21 gi|119873027|ref|YP_931034.1| - 1.3e-07 32.1 1.5 1.6e-07 31.8 1.5 1.1 1 0 0 1 1 1 1 PIN domain Plectin PF00681.20 gi|119873027|ref|YP_931034.1| - 0.049 13.5 0.0 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 Plectin repeat Cnd3 PF12719.7 gi|119873027|ref|YP_931034.1| - 0.082 12.1 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Imm-NTF2 PF15655.6 gi|119873027|ref|YP_931034.1| - 0.12 12.7 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 NTF2 fold immunity protein HTH_48 PF17906.1 gi|119873027|ref|YP_931034.1| - 0.16 12.1 0.1 0.37 11.0 0.0 1.6 2 0 0 2 2 2 0 HTH domain in Mos1 transposase DUF2760 PF10816.8 gi|119873028|ref|YP_931035.1| - 0.0013 18.5 0.2 0.0016 18.2 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF2760) IlvC PF01450.19 gi|119873028|ref|YP_931035.1| - 0.024 14.9 0.7 0.035 14.4 0.7 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF4061 PF13270.6 gi|119873028|ref|YP_931035.1| - 0.039 14.3 0.3 0.053 13.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4061) AAA_23 PF13476.6 gi|119873028|ref|YP_931035.1| - 0.14 12.7 2.9 0.16 12.5 2.9 1.1 1 0 0 1 1 1 0 AAA domain PKcGMP_CC PF16808.5 gi|119873028|ref|YP_931035.1| - 1.4 8.8 9.5 3.6 7.5 5.1 2.6 2 1 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Ribosomal_S30AE PF02482.19 gi|119873028|ref|YP_931035.1| - 2 9.3 6.2 1.8 9.4 1.4 2.1 1 1 1 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Csm1_B PF18211.1 gi|119873032|ref|YP_931039.1| - 1.6e-05 24.7 0.2 9.1e-05 22.2 0.0 2.5 2 0 0 2 2 2 1 Csm1 subunit domain B HD PF01966.22 gi|119873032|ref|YP_931039.1| - 0.0043 17.3 0.3 0.029 14.6 0.2 2.3 2 0 0 2 2 2 1 HD domain XTBD PF11952.8 gi|119873032|ref|YP_931039.1| - 0.083 12.7 0.1 2.6 7.9 0.0 2.6 2 0 0 2 2 2 0 XRN-Two Binding Domain, XTBD PspB PF06667.12 gi|119873032|ref|YP_931039.1| - 0.45 10.6 2.0 1.7 8.7 0.3 2.6 2 0 0 2 2 2 0 Phage shock protein B RAMPs PF03787.15 gi|119873033|ref|YP_931040.1| - 0.041 13.9 0.0 0.063 13.3 0.0 1.6 1 1 0 1 1 1 0 RAMP superfamily TPR_10 PF13374.6 gi|119873033|ref|YP_931040.1| - 0.093 12.6 1.0 1.1 9.2 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|119873033|ref|YP_931040.1| - 0.11 12.6 0.4 0.5 10.6 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat RAMPs PF03787.15 gi|119873034|ref|YP_931041.1| - 0.041 13.9 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 RAMP superfamily Y_Y_Y PF07495.13 gi|119873034|ref|YP_931041.1| - 0.09 12.7 0.1 16 5.6 0.1 2.4 2 0 0 2 2 2 0 Y_Y_Y domain RAMPs PF03787.15 gi|119873035|ref|YP_931042.1| - 1.8e-09 38.0 0.3 3.3e-08 33.8 0.0 2.5 2 1 0 2 2 2 1 RAMP superfamily Csm2_III-A PF03750.13 gi|119873036|ref|YP_931043.1| - 0.018 15.8 1.1 0.029 15.2 1.1 1.3 1 0 0 1 1 1 0 Csm2 Type III-A Gln-synt_C-ter PF18318.1 gi|119873036|ref|YP_931043.1| - 0.08 12.8 0.4 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 Glutamine synthetase C-terminal domain RelA_SpoT PF04607.17 gi|119873036|ref|YP_931043.1| - 0.22 11.8 2.4 2.2 8.6 0.1 2.6 1 1 2 3 3 3 0 Region found in RelA / SpoT proteins HATPase_c_3 PF13589.6 gi|119873039|ref|YP_931046.1| - 2.3e-07 30.7 0.0 5.1e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|119873039|ref|YP_931046.1| - 6.7e-06 26.6 0.0 2.4e-05 24.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HD PF01966.22 gi|119873039|ref|YP_931046.1| - 0.003 17.8 0.3 0.021 15.0 0.1 2.4 1 1 1 2 2 2 1 HD domain DTC PF18102.1 gi|119873042|ref|YP_931049.1| - 0.051 13.7 1.0 0.091 12.9 0.9 1.4 1 1 0 1 1 1 0 Deltex C-terminal domain M20_dimer PF07687.14 gi|119873043|ref|YP_931050.1| - 2e-05 24.4 0.0 4e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Peptidase dimerisation domain His_Phos_1 PF00300.22 gi|119873044|ref|YP_931051.1| - 1.3e-09 38.0 1.4 2.7e-09 37.0 0.2 1.8 2 0 0 2 2 2 1 Histidine phosphatase superfamily (branch 1) His_Phos_2 PF00328.22 gi|119873044|ref|YP_931051.1| - 0.072 12.4 0.0 0.082 12.2 0.0 1.1 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) MTS PF05175.14 gi|119873045|ref|YP_931052.1| - 1.7e-16 60.3 0.0 4.7e-16 58.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|119873045|ref|YP_931052.1| - 1.9e-12 47.2 1.0 5.5e-12 45.7 0.3 1.8 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|119873045|ref|YP_931052.1| - 1.7e-09 37.7 0.0 2.2e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|119873045|ref|YP_931052.1| - 2.7e-08 34.4 0.0 2e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|119873045|ref|YP_931052.1| - 7.7e-07 29.8 0.0 0.00019 22.1 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|119873045|ref|YP_931052.1| - 2.1e-06 27.8 0.1 6.2e-06 26.2 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119873045|ref|YP_931052.1| - 3e-06 27.8 0.0 2e-05 25.1 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|119873045|ref|YP_931052.1| - 5.1e-05 23.2 0.0 0.00072 19.4 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|119873045|ref|YP_931052.1| - 0.00028 20.7 0.0 0.00037 20.3 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_8 PF05148.15 gi|119873045|ref|YP_931052.1| - 0.00092 19.1 0.0 0.23 11.3 0.0 2.1 1 1 1 2 2 2 2 Hypothetical methyltransferase UPF0020 PF01170.18 gi|119873045|ref|YP_931052.1| - 0.0014 18.4 0.1 0.0025 17.5 0.1 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TRM PF02005.16 gi|119873045|ref|YP_931052.1| - 0.0021 17.3 0.0 0.0028 16.9 0.0 1.2 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_15 PF09445.10 gi|119873045|ref|YP_931052.1| - 0.0059 16.2 0.0 0.0088 15.6 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_10 PF05971.12 gi|119873045|ref|YP_931052.1| - 0.038 13.3 0.0 0.05 12.9 0.0 1.1 1 0 0 1 1 1 0 RNA methyltransferase PCMT PF01135.19 gi|119873045|ref|YP_931052.1| - 0.048 13.4 0.0 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|119873045|ref|YP_931052.1| - 0.054 13.1 0.0 0.079 12.6 0.0 1.4 1 1 0 1 1 1 0 Conserved hypothetical protein 95 GidB PF02527.15 gi|119873045|ref|YP_931052.1| - 0.16 11.2 0.1 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G tRNA_U5-meth_tr PF05958.11 gi|119873045|ref|YP_931052.1| - 0.19 10.7 0.0 0.25 10.3 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase AAA_31 PF13614.6 gi|119873047|ref|YP_931054.1| - 6.7e-20 71.7 0.0 1e-19 71.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|119873047|ref|YP_931054.1| - 1.4e-13 51.0 0.0 1.9e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|119873047|ref|YP_931054.1| - 6.1e-06 25.9 1.3 1.5e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|119873047|ref|YP_931054.1| - 3.6e-05 23.2 0.4 0.00059 19.2 0.1 2.2 1 1 0 2 2 2 1 ATPase MipZ AAA_24 PF13479.6 gi|119873047|ref|YP_931054.1| - 6.8e-05 22.7 0.1 0.00021 21.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|119873047|ref|YP_931054.1| - 0.00011 21.5 1.0 0.00021 20.6 1.0 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|119873047|ref|YP_931054.1| - 0.00013 21.6 0.1 0.00027 20.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|119873047|ref|YP_931054.1| - 0.00016 21.2 0.2 0.0017 17.9 0.2 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ VirC1 PF07015.11 gi|119873047|ref|YP_931054.1| - 0.00017 20.9 0.2 0.00028 20.3 0.2 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|119873047|ref|YP_931054.1| - 0.0048 16.4 0.0 0.0078 15.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.17 gi|119873047|ref|YP_931054.1| - 0.015 15.1 0.0 0.035 13.9 0.0 1.7 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein DnaB_C PF03796.15 gi|119873047|ref|YP_931054.1| - 0.07 12.4 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CLP1_P PF16575.5 gi|119873047|ref|YP_931054.1| - 0.08 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop NUDIX_4 PF14815.6 gi|119873048|ref|YP_931055.1| - 0.034 14.1 0.0 0.038 14.0 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain DUF4863 PF16155.5 gi|119873049|ref|YP_931056.1| - 0.17 11.8 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) Mrr_N PF14338.6 gi|119873050|ref|YP_931057.1| - 0.045 13.9 0.3 0.17 12.1 0.1 1.8 1 1 0 2 2 2 0 Mrr N-terminal domain DUF1495 PF07381.11 gi|119873050|ref|YP_931057.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) CTP_transf_like PF01467.26 gi|119873051|ref|YP_931058.1| - 4.5e-14 52.9 0.0 2.5e-13 50.4 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|119873051|ref|YP_931058.1| - 0.007 15.9 0.0 0.44 10.0 0.0 2.1 2 0 0 2 2 2 2 ATP-sulfurylase HIGH_NTase1 PF05636.11 gi|119873051|ref|YP_931058.1| - 0.025 13.8 0.0 1.2 8.3 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase tRNA-synt_2d PF01409.20 gi|119873052|ref|YP_931059.1| - 4.4e-79 265.4 0.0 5.5e-79 265.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|119873052|ref|YP_931059.1| - 9.7e-08 31.7 0.0 1.3e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|119873052|ref|YP_931059.1| - 3.3e-07 29.7 0.0 0.0052 15.9 0.0 3.2 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HBS1_N PF08938.10 gi|119873052|ref|YP_931059.1| - 0.017 15.4 0.2 0.06 13.7 0.1 1.9 2 0 0 2 2 2 0 HBS1 N-terminus HTH_Crp_2 PF13545.6 gi|119873052|ref|YP_931059.1| - 0.19 11.8 0.5 2.3 8.3 0.0 2.9 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain RHH_1 PF01402.21 gi|119873053|ref|YP_931060.1| - 1.5e-13 50.1 0.1 2.4e-13 49.5 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|119873053|ref|YP_931060.1| - 0.0027 17.9 0.0 0.0028 17.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DUF1512 PF07431.12 gi|119873055|ref|YP_931062.1| - 2.4e-132 441.3 0.9 2.7e-132 441.1 0.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Intron_maturas2 PF01348.21 gi|119873055|ref|YP_931062.1| - 0.06 13.3 0.2 0.72 9.8 0.2 2.3 2 0 0 2 2 2 0 Type II intron maturase ZYG-11_interact PF05884.12 gi|119873057|ref|YP_931064.1| - 0.0086 15.5 3.1 0.0097 15.3 3.1 1.1 1 0 0 1 1 1 1 Interactor of ZYG-11 DUF2633 PF11119.8 gi|119873057|ref|YP_931064.1| - 0.13 12.2 0.3 0.13 12.2 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) YrhC PF14143.6 gi|119873057|ref|YP_931064.1| - 0.67 10.1 5.8 0.61 10.2 2.8 2.0 2 0 0 2 2 2 0 YrhC-like protein ABC2_membrane_2 PF12679.7 gi|119873057|ref|YP_931064.1| - 0.9 8.8 8.4 1 8.6 8.4 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF1206 PF06724.11 gi|119873057|ref|YP_931064.1| - 0.93 9.6 11.2 0.14 12.3 3.6 2.3 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) DHR10 PF18595.1 gi|119873058|ref|YP_931065.1| - 0.00038 20.5 19.6 0.00038 20.5 19.6 5.5 1 1 5 6 6 6 2 Designed helical repeat protein 10 domain Baculo_PEP_C PF04513.12 gi|119873058|ref|YP_931065.1| - 0.0014 18.7 5.7 0.0014 18.7 5.7 4.6 2 1 4 6 6 5 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|119873058|ref|YP_931065.1| - 0.0019 18.2 5.9 0.0019 18.2 5.9 4.4 2 1 3 5 5 4 2 Laminin Domain II Sec34 PF04136.15 gi|119873058|ref|YP_931065.1| - 0.0022 17.9 32.0 0.015 15.2 1.8 4.7 1 1 4 5 5 5 2 Sec34-like family DUF948 PF06103.11 gi|119873058|ref|YP_931065.1| - 0.0035 17.5 1.5 0.0035 17.5 1.5 5.0 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) Spc7 PF08317.11 gi|119873058|ref|YP_931065.1| - 0.0056 15.6 64.6 0.17 10.8 6.5 4.4 1 1 3 4 4 4 3 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|119873058|ref|YP_931065.1| - 0.011 15.9 1.1 0.011 15.9 1.1 3.6 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family putAbiC PF16872.5 gi|119873058|ref|YP_931065.1| - 0.032 14.9 0.1 0.12 13.1 0.1 2.0 1 0 0 1 1 1 0 Putative phage abortive infection protein DUF4200 PF13863.6 gi|119873058|ref|YP_931065.1| - 0.045 14.1 68.8 0.24 11.8 24.9 4.3 1 1 3 4 4 4 0 Domain of unknown function (DUF4200) APG17 PF04108.12 gi|119873058|ref|YP_931065.1| - 0.058 12.5 35.5 0.072 12.2 2.9 3.3 1 1 1 3 3 3 0 Autophagy protein Apg17 Mating_N PF12731.7 gi|119873058|ref|YP_931065.1| - 0.062 13.4 5.7 0.49 10.5 0.4 3.7 4 0 0 4 4 3 0 Mating-type protein beta 1 Vip3A_N PF12495.8 gi|119873058|ref|YP_931065.1| - 0.12 12.3 3.4 0.2 11.5 0.2 2.6 2 1 1 3 3 3 0 Vegetative insecticide protein 3A N terminal Lambda_CIII PF02061.16 gi|119873058|ref|YP_931065.1| - 0.12 12.4 0.0 16 5.6 0.1 3.5 1 1 1 2 2 2 0 Lambda Phage CIII DUF3130 PF11328.8 gi|119873058|ref|YP_931065.1| - 0.16 12.2 3.0 13 6.1 0.2 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3130 BLOC1_2 PF10046.9 gi|119873058|ref|YP_931065.1| - 0.2 12.0 43.2 0.11 12.8 0.9 5.7 1 1 5 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|119873058|ref|YP_931065.1| - 0.27 11.3 32.6 0.27 11.3 1.0 4.5 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) Flagellin_N PF00669.20 gi|119873058|ref|YP_931065.1| - 0.49 10.5 19.4 0.15 12.2 5.3 3.6 2 1 1 3 3 3 0 Bacterial flagellin N-terminal helical region Mce4_CUP1 PF11887.8 gi|119873058|ref|YP_931065.1| - 0.74 9.2 11.1 5.9 6.3 0.9 3.0 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF3584 PF12128.8 gi|119873058|ref|YP_931065.1| - 0.88 7.0 47.9 0.2 9.2 10.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) ESX-1_EspG PF14011.6 gi|119873058|ref|YP_931065.1| - 0.96 9.0 6.6 0.25 10.9 2.0 2.2 2 0 0 2 2 2 0 EspG family NPV_P10 PF05531.12 gi|119873058|ref|YP_931065.1| - 1 9.9 17.1 34 5.0 7.7 4.9 2 1 0 3 3 2 0 Nucleopolyhedrovirus P10 protein Exonuc_VII_L PF02601.15 gi|119873058|ref|YP_931065.1| - 2 7.9 44.9 28 4.2 21.7 3.2 1 1 1 2 2 1 0 Exonuclease VII, large subunit IFT57 PF10498.9 gi|119873058|ref|YP_931065.1| - 3.7 6.4 41.7 0.091 11.7 0.4 4.4 1 1 4 5 5 5 0 Intra-flagellar transport protein 57 Cellulose_synt PF03552.14 gi|119873058|ref|YP_931065.1| - 6.4 5.1 5.3 10 4.5 5.3 1.3 1 0 0 1 1 1 0 Cellulose synthase YjcZ PF13990.6 gi|119873058|ref|YP_931065.1| - 7.8 5.8 31.0 0.92 8.8 10.3 3.4 1 1 2 3 3 3 0 YjcZ-like protein OmpH PF03938.14 gi|119873058|ref|YP_931065.1| - 8.1 6.8 57.7 5 7.5 19.6 4.1 1 1 3 4 4 4 0 Outer membrane protein (OmpH-like) CENP-F_leu_zip PF10473.9 gi|119873059|ref|YP_931066.1| - 3.2e-06 27.2 0.2 6.4e-06 26.2 0.0 1.5 1 1 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG7 PF10191.9 gi|119873059|ref|YP_931066.1| - 0.0038 15.5 0.9 0.0042 15.4 0.9 1.0 1 0 0 1 1 1 1 Golgi complex component 7 (COG7) DUF4618 PF15397.6 gi|119873059|ref|YP_931066.1| - 0.005 16.3 0.8 0.86 9.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) Laminin_II PF06009.12 gi|119873059|ref|YP_931066.1| - 0.012 15.7 1.5 0.016 15.2 0.6 1.6 1 1 1 2 2 2 0 Laminin Domain II ATG16 PF08614.11 gi|119873059|ref|YP_931066.1| - 0.019 15.2 2.0 0.026 14.8 2.0 1.2 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF4763 PF15960.5 gi|119873059|ref|YP_931066.1| - 0.03 13.6 0.0 0.042 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Spc7 PF08317.11 gi|119873059|ref|YP_931066.1| - 0.037 12.9 0.5 0.041 12.8 0.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|119873059|ref|YP_931066.1| - 0.045 14.0 0.8 0.071 13.4 0.2 1.6 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Cnn_1N PF07989.11 gi|119873059|ref|YP_931066.1| - 0.063 13.4 0.7 0.57 10.4 0.0 2.3 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 DUF2408 PF10303.9 gi|119873059|ref|YP_931066.1| - 0.079 13.5 1.8 0.42 11.2 1.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Fib_alpha PF08702.10 gi|119873059|ref|YP_931066.1| - 0.087 13.0 0.5 0.15 12.3 0.5 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family CK2S PF15011.6 gi|119873059|ref|YP_931066.1| - 0.14 12.0 2.7 4.1 7.3 0.1 2.2 1 1 1 2 2 2 0 Casein Kinase 2 substrate DUF2087 PF09860.9 gi|119873059|ref|YP_931066.1| - 0.21 11.8 1.5 3 8.1 0.2 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2087) COG2 PF06148.11 gi|119873059|ref|YP_931066.1| - 0.37 10.9 5.5 4.1 7.5 1.9 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Hexapep PF00132.24 gi|119873060|ref|YP_931067.1| - 7e-28 95.3 30.5 2.4e-08 33.4 1.4 5.5 4 1 3 7 7 7 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|119873060|ref|YP_931067.1| - 2.1e-16 59.4 26.2 1.9e-07 30.7 2.7 5.8 4 2 1 6 6 6 5 Hexapeptide repeat of succinyl-transferase Peptidase_M42 PF05343.14 gi|119873061|ref|YP_931068.1| - 4e-82 275.5 0.0 4.6e-82 275.3 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|119873061|ref|YP_931068.1| - 1.8e-05 24.5 0.1 5.3e-05 23.0 0.1 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|119873061|ref|YP_931068.1| - 2.7e-05 23.2 0.0 0.0005 19.0 0.0 2.1 1 1 1 2 2 2 1 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|119873061|ref|YP_931068.1| - 0.0023 17.7 0.0 0.021 14.5 0.0 2.2 2 0 0 2 2 2 1 Peptidase family M28 PNP_UDP_1 PF01048.20 gi|119873062|ref|YP_931069.1| - 7.1e-30 104.0 0.7 7.7e-30 103.9 0.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily FARP PF01581.16 gi|119873063|ref|YP_931070.1| - 0.87 10.4 4.0 4.7 8.2 0.1 2.4 2 0 0 2 2 2 0 FMRFamide related peptide family Lys_export PF03956.13 gi|119873064|ref|YP_931071.1| - 3.3e-39 134.4 13.9 3.3e-39 134.4 13.9 2.1 2 0 0 2 2 2 2 Lysine exporter LysO Flavoprotein PF02441.19 gi|119873066|ref|YP_931073.1| - 4.7e-25 88.2 0.1 6e-25 87.8 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein RHH_1 PF01402.21 gi|119873068|ref|YP_931075.1| - 1.4e-07 31.2 0.3 1.8e-07 30.8 0.3 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|119873068|ref|YP_931075.1| - 0.00046 20.3 0.0 0.00051 20.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|119873068|ref|YP_931075.1| - 0.0079 16.3 0.1 0.012 15.7 0.0 1.3 1 1 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 gi|119873068|ref|YP_931075.1| - 0.018 14.9 0.3 0.025 14.5 0.3 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB RHH_3 PF12651.7 gi|119873068|ref|YP_931075.1| - 0.099 12.6 0.8 1.1 9.3 0.8 2.1 1 1 0 1 1 1 0 Ribbon-helix-helix domain RHH_5 PF07878.11 gi|119873068|ref|YP_931075.1| - 0.2 11.6 1.3 3.5 7.6 0.3 2.3 2 1 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 SIS PF01380.22 gi|119873069|ref|YP_931076.1| - 3.6e-17 62.4 0.0 6.1e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|119873069|ref|YP_931076.1| - 1e-12 48.2 1.1 4.1e-08 33.4 0.8 2.4 1 1 1 2 2 2 2 SIS domain DSPc PF00782.20 gi|119873069|ref|YP_931076.1| - 0.0097 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain LigB PF02900.18 gi|119873069|ref|YP_931076.1| - 0.073 12.1 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase PRMT5 PF05185.16 gi|119873069|ref|YP_931076.1| - 0.1 12.5 2.1 2.4 8.0 0.1 2.7 2 1 1 3 3 3 0 PRMT5 arginine-N-methyltransferase AdoMet_dc PF02675.15 gi|119873070|ref|YP_931077.1| - 4.6e-36 123.3 0.0 5.1e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase zf-ribbon_3 PF13248.6 gi|119873072|ref|YP_931079.1| - 5e-05 22.6 0.8 0.13 11.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|119873072|ref|YP_931079.1| - 0.00046 20.2 0.6 0.19 11.8 0.0 2.1 1 1 1 2 2 2 1 CpXC protein DZR PF12773.7 gi|119873072|ref|YP_931079.1| - 0.00096 19.1 0.6 0.0016 18.5 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119873072|ref|YP_931079.1| - 0.0013 18.7 5.0 0.0087 16.0 5.8 1.8 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|119873072|ref|YP_931079.1| - 0.0015 18.1 5.4 0.0072 16.0 5.5 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DUF1610 PF07754.11 gi|119873072|ref|YP_931079.1| - 0.0019 18.1 1.4 0.25 11.4 0.4 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|119873072|ref|YP_931079.1| - 0.004 17.0 0.5 0.0059 16.5 0.5 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_7 PF02591.15 gi|119873072|ref|YP_931079.1| - 0.0045 17.1 1.6 0.64 10.3 0.0 2.5 3 0 0 3 3 2 1 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|119873072|ref|YP_931079.1| - 0.0062 16.4 3.3 0.0081 16.1 3.3 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain Cys_rich_CPXG PF14255.6 gi|119873072|ref|YP_931079.1| - 0.0065 16.3 0.6 0.29 11.1 0.1 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG Nudix_N_2 PF14803.6 gi|119873072|ref|YP_931079.1| - 0.0081 16.1 4.8 0.046 13.7 4.8 2.1 1 1 0 1 1 1 1 Nudix N-terminal zinc_ribbon_6 PF14599.6 gi|119873072|ref|YP_931079.1| - 0.01 15.9 0.6 0.017 15.1 0.6 1.4 1 0 0 1 1 1 0 Zinc-ribbon DUF1922 PF09082.10 gi|119873072|ref|YP_931079.1| - 0.012 15.9 2.1 0.013 15.8 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) zf-LITAF-like PF10601.9 gi|119873072|ref|YP_931079.1| - 0.013 15.8 3.3 2.1 8.6 0.2 2.2 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Sgf11 PF08209.11 gi|119873072|ref|YP_931079.1| - 0.013 15.0 1.7 0.61 9.7 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2 PF00096.26 gi|119873072|ref|YP_931079.1| - 0.014 15.9 3.5 0.2 12.2 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type FYVE PF01363.21 gi|119873072|ref|YP_931079.1| - 0.014 15.5 0.3 0.015 15.4 0.3 1.2 1 0 0 1 1 1 0 FYVE zinc finger HypA PF01155.19 gi|119873072|ref|YP_931079.1| - 0.015 15.3 2.3 0.02 14.9 2.1 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Prok-RING_1 PF14446.6 gi|119873072|ref|YP_931079.1| - 0.016 15.1 1.9 1.8 8.5 0.3 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C2HC5 PF06221.13 gi|119873072|ref|YP_931079.1| - 0.018 15.1 0.3 0.021 14.8 0.3 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|119873072|ref|YP_931079.1| - 0.018 14.5 3.1 0.11 12.0 3.1 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2HC_2 PF13913.6 gi|119873072|ref|YP_931079.1| - 0.02 14.8 6.5 0.88 9.5 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.6 gi|119873072|ref|YP_931079.1| - 0.027 14.9 1.4 5 7.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Ogr_Delta PF04606.12 gi|119873072|ref|YP_931079.1| - 0.036 14.1 4.3 2.1 8.4 1.1 2.4 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger UPF0547 PF10571.9 gi|119873072|ref|YP_931079.1| - 0.036 14.1 3.2 1.7 8.8 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3268 PF11672.8 gi|119873072|ref|YP_931079.1| - 0.04 14.2 1.1 0.3 11.4 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zf-CHCC PF10276.9 gi|119873072|ref|YP_931079.1| - 0.042 13.9 2.0 0.23 11.6 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger domain zinc_ribbon_5 PF13719.6 gi|119873072|ref|YP_931079.1| - 0.043 13.6 2.9 0.34 10.7 0.1 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|119873072|ref|YP_931079.1| - 0.047 13.6 1.6 0.079 12.8 1.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.6 gi|119873072|ref|YP_931079.1| - 0.055 13.4 4.2 1.4 8.9 0.1 2.4 1 1 2 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|119873072|ref|YP_931079.1| - 0.065 13.1 2.8 0.71 9.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) FYDLN_acid PF09538.10 gi|119873072|ref|YP_931079.1| - 0.065 13.9 0.7 6.6 7.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-ISL3 PF14690.6 gi|119873072|ref|YP_931079.1| - 0.073 13.8 6.2 3.8 8.2 1.7 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Mu-like_Com PF10122.9 gi|119873072|ref|YP_931079.1| - 0.086 12.3 3.0 1.9 8.0 3.1 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com zinc_ribbon_10 PF10058.9 gi|119873072|ref|YP_931079.1| - 0.088 12.6 1.9 0.22 11.3 1.9 1.7 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein DUF1451 PF07295.11 gi|119873072|ref|YP_931079.1| - 0.093 12.8 1.0 0.13 12.3 1.0 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-BED PF02892.15 gi|119873072|ref|YP_931079.1| - 0.11 12.5 2.3 0.63 10.1 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger zf_C2H2_10 PF18414.1 gi|119873072|ref|YP_931079.1| - 0.13 11.9 2.0 5 6.8 0.3 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-Di19 PF05605.12 gi|119873072|ref|YP_931079.1| - 0.13 12.5 3.4 2.2 8.7 0.3 2.2 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF2614 PF11023.8 gi|119873072|ref|YP_931079.1| - 0.16 12.1 0.5 0.17 11.9 0.5 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain YacG PF03884.14 gi|119873072|ref|YP_931079.1| - 0.16 11.7 2.4 0.68 9.7 2.5 1.9 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Zn-ribbon_8 PF09723.10 gi|119873072|ref|YP_931079.1| - 0.21 11.7 5.2 1.3 9.2 0.7 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.14 gi|119873072|ref|YP_931079.1| - 0.25 11.3 0.2 0.25 11.3 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf_UBZ PF18439.1 gi|119873072|ref|YP_931079.1| - 0.28 10.8 2.6 4.7 6.9 0.4 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|119873072|ref|YP_931079.1| - 0.28 12.1 4.1 4.4 8.4 0.1 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger zf-Mss51 PF13824.6 gi|119873072|ref|YP_931079.1| - 0.36 11.0 4.2 4.4 7.5 4.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C3H2C3 PF17122.5 gi|119873072|ref|YP_931079.1| - 0.39 10.8 4.0 7.6 6.7 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger DUF3797 PF12677.7 gi|119873072|ref|YP_931079.1| - 0.46 10.4 5.2 1.6 8.6 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ACC PF17848.1 gi|119873072|ref|YP_931079.1| - 0.65 10.1 5.5 8.1 6.6 0.1 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-tcix PF14952.6 gi|119873072|ref|YP_931079.1| - 0.81 9.4 7.9 3.1 7.5 1.2 2.3 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Glutaredoxin PF00462.24 gi|119873072|ref|YP_931079.1| - 1.3 9.3 5.8 40 4.5 5.8 2.7 1 1 0 1 1 1 0 Glutaredoxin Aconitase PF00330.20 gi|119873073|ref|YP_931080.1| - 3.4e-169 563.7 0.0 4.1e-169 563.4 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|119873073|ref|YP_931080.1| - 5.8e-36 123.7 0.0 1e-35 122.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain HTH_38 PF13936.6 gi|119873073|ref|YP_931080.1| - 0.11 12.2 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain FAM165 PF14981.6 gi|119873074|ref|YP_931081.1| - 0.0097 15.7 3.1 0.0097 15.7 3.1 2.2 2 0 0 2 2 2 1 FAM165 family TIM PF00121.18 gi|119873075|ref|YP_931082.1| - 5.2e-11 42.4 0.3 2.6e-09 36.8 0.0 2.1 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|119873075|ref|YP_931082.1| - 3.8e-06 26.4 0.4 3.8e-06 26.4 0.4 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|119873075|ref|YP_931082.1| - 1.4e-05 24.4 0.0 3.3e-05 23.2 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|119873075|ref|YP_931082.1| - 0.00013 21.5 0.1 0.00032 20.2 0.1 1.6 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|119873075|ref|YP_931082.1| - 0.0062 16.0 5.9 0.022 14.2 5.9 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|119873075|ref|YP_931082.1| - 0.0086 15.1 0.0 0.02 13.9 0.0 1.6 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Polysacc_deac_2 PF04748.13 gi|119873075|ref|YP_931082.1| - 0.044 13.0 0.9 0.44 9.7 0.0 2.8 4 0 0 4 4 4 0 Divergent polysaccharide deacetylase GatD_N PF18195.1 gi|119873076|ref|YP_931083.1| - 0.036 13.4 0.4 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 GatD N-terminal domain Bacteroid_pep PF14406.6 gi|119873077|ref|YP_931084.1| - 0.17 12.3 0.0 0.41 11.0 0.0 1.6 2 0 0 2 2 2 0 Ribosomally synthesized peptide in Bacteroidetes Ribosomal_S6e PF01092.19 gi|119873079|ref|YP_931086.1| - 1.8e-30 105.5 0.0 2.4e-30 105.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.21 gi|119873080|ref|YP_931087.1| - 1.6e-15 56.8 0.1 1.8e-15 56.7 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Lactamase_B PF00753.27 gi|119873081|ref|YP_931088.1| - 4.9e-15 56.1 7.0 1.3e-14 54.7 7.0 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119873081|ref|YP_931088.1| - 8.4e-05 22.2 0.5 0.00028 20.5 0.2 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119873081|ref|YP_931088.1| - 0.0005 20.0 0.1 0.00096 19.1 0.1 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1513 PF07433.11 gi|119873081|ref|YP_931088.1| - 0.015 14.4 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1513) Amidase PF01425.21 gi|119873082|ref|YP_931089.1| - 1.1e-82 278.5 3.0 3.7e-82 276.7 3.0 1.7 1 1 0 1 1 1 1 Amidase Translin PF01997.16 gi|119873083|ref|YP_931090.1| - 1.7e-14 54.3 1.3 3.9e-13 49.9 1.3 2.0 1 1 0 1 1 1 1 Translin family Vps51 PF08700.11 gi|119873083|ref|YP_931090.1| - 0.017 15.2 1.4 0.046 13.8 0.7 2.1 2 1 0 2 2 2 0 Vps51/Vps67 Phage_AlpA PF05930.12 gi|119873083|ref|YP_931090.1| - 0.04 13.8 0.1 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 Prophage CP4-57 regulatory protein (AlpA) Presenilin PF01080.17 gi|119873084|ref|YP_931091.1| - 0.0079 15.0 33.7 0.061 12.1 18.6 2.2 1 1 1 2 2 2 2 Presenilin DUF2569 PF10754.9 gi|119873084|ref|YP_931091.1| - 0.016 15.7 10.3 0.016 15.7 10.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2569) B3_4 PF03483.17 gi|119873086|ref|YP_931093.1| - 0.18 11.5 0.1 0.28 10.9 0.1 1.3 1 0 0 1 1 1 0 B3/4 domain CBS PF00571.28 gi|119873087|ref|YP_931094.1| - 7.3e-23 80.8 0.4 1.5e-10 41.4 0.2 2.1 2 0 0 2 2 2 2 CBS domain GGDEF_2 PF17853.1 gi|119873087|ref|YP_931094.1| - 0.095 13.0 0.0 0.23 11.7 0.0 1.6 1 1 0 1 1 1 0 GGDEF-like domain Cren7 PF11520.8 gi|119873088|ref|YP_931095.1| - 1.1e-20 73.3 3.3 1.1e-20 73.2 3.3 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 GTP_EFTU_D4 PF14578.6 gi|119873090|ref|YP_931097.1| - 8.4e-35 118.6 5.9 3.6e-34 116.5 5.9 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|119873090|ref|YP_931097.1| - 2.1e-27 96.0 0.0 4.6e-27 94.8 0.0 1.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|119873090|ref|YP_931097.1| - 4.8e-16 58.8 0.0 1e-15 57.7 0.0 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|119873090|ref|YP_931097.1| - 3.7e-13 49.6 10.5 2.4e-09 37.4 0.5 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119873090|ref|YP_931097.1| - 3.6e-05 23.8 0.0 8.3e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|119873090|ref|YP_931097.1| - 0.014 15.6 0.0 0.045 14.0 0.0 1.9 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|119873090|ref|YP_931097.1| - 0.13 12.0 0.0 0.44 10.3 0.0 1.9 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Fe-ADH PF00465.19 gi|119873091|ref|YP_931098.1| - 1.9e-91 306.6 0.2 2.3e-91 306.3 0.2 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|119873091|ref|YP_931098.1| - 5.8e-14 52.4 1.7 6.2e-10 39.2 0.1 2.7 1 1 1 2 2 2 2 Iron-containing alcohol dehydrogenase DUF4521 PF15021.6 gi|119873091|ref|YP_931098.1| - 0.036 14.0 0.0 0.055 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4521) DAGK_cat PF00781.24 gi|119873091|ref|YP_931098.1| - 0.042 13.5 0.0 0.12 12.0 0.0 1.8 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain MMR_HSR1 PF01926.23 gi|119873092|ref|YP_931099.1| - 0.00037 20.6 0.0 0.00047 20.2 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|119873092|ref|YP_931099.1| - 0.00042 19.9 0.1 0.0019 17.8 0.1 1.8 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.9 gi|119873092|ref|YP_931099.1| - 0.011 15.5 0.0 0.039 13.7 0.0 1.8 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|119873092|ref|YP_931099.1| - 0.019 14.4 0.0 0.024 14.1 0.0 1.1 1 0 0 1 1 1 0 ADP-ribosylation factor family Roc PF08477.13 gi|119873092|ref|YP_931099.1| - 0.032 14.4 0.0 0.16 12.2 0.0 1.9 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase DSPc PF00782.20 gi|119873093|ref|YP_931100.1| - 1.2e-12 47.8 0.0 1.3e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.6 gi|119873093|ref|YP_931100.1| - 9.4e-07 29.1 0.0 1.2e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.27 gi|119873093|ref|YP_931100.1| - 1.8e-05 24.4 0.0 2.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|119873093|ref|YP_931100.1| - 0.00022 21.0 0.0 0.00028 20.6 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|119873093|ref|YP_931100.1| - 0.011 15.7 0.0 0.13 12.2 0.0 2.0 1 1 0 1 1 1 0 Tyrosine phosphatase family BPD_transp_1 PF00528.22 gi|119873094|ref|YP_931101.1| - 3e-13 49.9 10.9 3e-13 49.9 10.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|119873095|ref|YP_931102.1| - 4.6e-29 101.7 0.0 5.9e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873095|ref|YP_931102.1| - 5.5e-09 36.2 1.7 0.00011 22.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119873095|ref|YP_931102.1| - 7.7e-07 29.8 0.2 1.7e-06 28.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|119873095|ref|YP_931102.1| - 1.6e-06 27.7 0.1 0.0012 18.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119873095|ref|YP_931102.1| - 4.7e-05 23.3 0.1 7.5e-05 22.6 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|119873095|ref|YP_931102.1| - 0.00022 21.0 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|119873095|ref|YP_931102.1| - 0.00087 19.0 0.1 0.0017 18.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873095|ref|YP_931102.1| - 0.0015 19.0 0.0 0.0022 18.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|119873095|ref|YP_931102.1| - 0.0052 16.7 0.1 0.0095 15.9 0.1 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|119873095|ref|YP_931102.1| - 0.014 15.3 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|119873095|ref|YP_931102.1| - 0.015 15.5 0.1 0.21 11.8 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|119873095|ref|YP_931102.1| - 0.032 14.4 0.0 0.16 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119873095|ref|YP_931102.1| - 0.036 14.0 0.3 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_27 PF13514.6 gi|119873095|ref|YP_931102.1| - 0.039 13.5 0.0 0.061 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119873095|ref|YP_931102.1| - 0.045 14.2 0.2 0.093 13.2 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|119873095|ref|YP_931102.1| - 0.048 14.0 0.2 0.32 11.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|119873095|ref|YP_931102.1| - 0.099 12.7 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|119873095|ref|YP_931102.1| - 0.1 12.9 0.1 0.15 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|119873095|ref|YP_931102.1| - 0.12 11.1 0.5 0.26 10.0 0.1 1.7 2 0 0 2 2 2 0 Adenovirus IVa2 protein NACHT PF05729.12 gi|119873095|ref|YP_931102.1| - 0.13 12.2 0.1 0.21 11.5 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|119873095|ref|YP_931102.1| - 0.13 12.2 0.1 0.39 10.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|119873095|ref|YP_931102.1| - 0.18 11.1 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin NMT1_2 PF13379.6 gi|119873096|ref|YP_931103.1| - 1.4e-17 64.3 0.0 9.3e-10 38.6 0.0 2.1 2 0 0 2 2 2 2 NMT1-like family NMT1 PF09084.11 gi|119873096|ref|YP_931103.1| - 1e-10 41.9 0.4 2.4e-09 37.5 0.4 2.5 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|119873096|ref|YP_931103.1| - 6.7e-05 22.4 0.1 0.0026 17.2 0.1 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 3 Lipoprotein_9 PF03180.14 gi|119873096|ref|YP_931103.1| - 8.1e-05 21.8 0.0 0.00052 19.2 0.0 2.1 1 1 0 1 1 1 1 NLPA lipoprotein YhfZ_C PF14503.6 gi|119873096|ref|YP_931103.1| - 0.019 14.5 0.0 0.051 13.1 0.0 1.7 1 1 0 1 1 1 0 YhfZ C-terminal domain DsbD PF02683.15 gi|119873097|ref|YP_931104.1| - 7.7e-14 52.1 18.0 2.7e-12 47.0 18.0 2.2 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.6 gi|119873097|ref|YP_931104.1| - 7.4e-05 23.2 0.0 0.00018 21.9 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|119873097|ref|YP_931104.1| - 0.00019 21.6 0.0 0.00041 20.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like TerC PF03741.16 gi|119873097|ref|YP_931104.1| - 8 6.1 12.8 0.57 9.8 7.3 1.9 2 0 0 2 2 2 0 Integral membrane protein TerC family Lactamase_B PF00753.27 gi|119873098|ref|YP_931105.1| - 6.5e-26 91.6 2.4 9.5e-26 91.0 2.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119873098|ref|YP_931105.1| - 6.5e-05 22.5 0.0 9.1e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|119873098|ref|YP_931105.1| - 0.16 11.9 0.1 0.2 11.5 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF4965 PF16335.5 gi|119873101|ref|YP_931108.1| - 0.065 12.9 0.1 0.065 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4965) DAO PF01266.24 gi|119873102|ref|YP_931109.1| - 1.4e-13 51.2 5.2 1e-11 45.1 5.2 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|119873102|ref|YP_931109.1| - 4.1e-09 36.1 0.0 9.8e-09 34.8 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119873102|ref|YP_931109.1| - 0.00067 19.8 0.5 0.0014 18.8 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|119873102|ref|YP_931109.1| - 0.052 12.6 0.3 0.17 10.9 0.1 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF1478 PF07349.11 gi|119873102|ref|YP_931109.1| - 0.11 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1478) FAD_binding_3 PF01494.19 gi|119873102|ref|YP_931109.1| - 0.11 11.7 1.4 0.19 10.9 0.9 1.6 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|119873102|ref|YP_931109.1| - 0.14 10.9 1.6 1 8.1 0.6 2.1 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|119873102|ref|YP_931109.1| - 0.17 10.9 1.0 0.39 9.7 1.0 1.6 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|119873102|ref|YP_931109.1| - 0.41 9.3 1.3 0.58 8.8 0.6 1.5 2 0 0 2 2 2 0 HI0933-like protein RHH_1 PF01402.21 gi|119873103|ref|YP_931110.1| - 6.4e-12 45.0 0.0 9.6e-12 44.4 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|119873103|ref|YP_931110.1| - 0.00017 21.7 0.0 0.0002 21.5 0.0 1.2 1 1 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|119873103|ref|YP_931110.1| - 0.0048 17.3 0.0 0.0064 16.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|119873103|ref|YP_931110.1| - 0.0067 16.3 0.0 0.0098 15.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial antitoxin of type II TA system, VapB DUF5547 PF17701.1 gi|119873103|ref|YP_931110.1| - 0.11 12.4 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5547) EamA PF00892.20 gi|119873104|ref|YP_931111.1| - 4.1e-26 91.8 42.7 1.9e-14 54.0 18.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|119873104|ref|YP_931111.1| - 0.00014 21.9 11.8 0.0032 17.5 3.5 2.9 2 2 0 2 2 2 2 Putative transmembrane family 234 Ureide_permease PF07168.11 gi|119873104|ref|YP_931111.1| - 0.00042 19.2 2.1 0.00042 19.2 2.1 2.2 2 1 0 3 3 3 1 Ureide permease MttA_Hcf106 PF02416.16 gi|119873105|ref|YP_931112.1| - 2.5e-17 61.9 0.3 7.1e-16 57.3 0.3 2.2 2 0 0 2 2 2 1 mttA/Hcf106 family Hom_end PF05204.14 gi|119873105|ref|YP_931112.1| - 0.02 15.1 0.1 0.03 14.5 0.1 1.2 1 0 0 1 1 1 0 Homing endonuclease DUF2465 PF10239.9 gi|119873105|ref|YP_931112.1| - 0.024 13.9 0.4 0.03 13.6 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) Occludin_ELL PF07303.13 gi|119873105|ref|YP_931112.1| - 0.043 14.5 0.3 0.055 14.2 0.3 1.1 1 0 0 1 1 1 0 Occludin homology domain Neuromodulin_N PF10580.9 gi|119873105|ref|YP_931112.1| - 0.057 13.2 1.5 0.095 12.5 1.5 1.3 1 0 0 1 1 1 0 Gap junction protein N-terminal region TatC PF00902.18 gi|119873106|ref|YP_931113.1| - 2.4e-41 141.9 21.3 2.8e-41 141.6 21.3 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) AA_kinase PF00696.28 gi|119873109|ref|YP_931116.1| - 9.8e-36 123.5 0.0 3.1e-35 121.9 0.0 1.6 1 1 0 1 1 1 1 Amino acid kinase family SKI PF01202.22 gi|119873109|ref|YP_931116.1| - 0.099 12.8 0.8 0.54 10.4 0.0 2.3 2 1 1 3 3 3 0 Shikimate kinase tRNA-synt_His PF13393.6 gi|119873110|ref|YP_931117.1| - 1.7e-67 227.9 0.1 2.1e-67 227.6 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|119873110|ref|YP_931117.1| - 4.3e-14 52.4 1.6 1.3e-13 50.8 0.0 2.4 3 0 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119873110|ref|YP_931117.1| - 5.5e-08 33.0 0.0 3.7e-07 30.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|119873110|ref|YP_931117.1| - 0.0026 17.3 0.3 0.0079 15.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) IF2_N PF04760.15 gi|119873110|ref|YP_931117.1| - 0.037 13.8 1.5 6.1 6.7 0.0 4.1 4 0 0 4 4 4 0 Translation initiation factor IF-2, N-terminal region CIF PF16374.5 gi|119873110|ref|YP_931117.1| - 0.17 12.0 0.3 6.6 6.8 0.0 2.3 1 1 1 2 2 2 0 Cycle inhibiting factor (CIF) Sacchrp_dh_C PF16653.5 gi|119873111|ref|YP_931118.1| - 1.3e-24 87.8 0.0 1.6e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|119873111|ref|YP_931118.1| - 4.8e-10 39.8 0.0 7e-08 32.8 0.0 2.3 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|119873111|ref|YP_931118.1| - 5.1e-05 23.5 0.0 9.7e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|119873111|ref|YP_931118.1| - 0.013 15.1 0.0 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Semialdhyde_dh PF01118.24 gi|119873111|ref|YP_931118.1| - 0.068 13.6 0.0 0.17 12.3 0.0 1.7 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|119873111|ref|YP_931118.1| - 0.1 13.0 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Glycos_transf_2 PF00535.26 gi|119873112|ref|YP_931119.1| - 9.6e-36 123.1 0.0 1.4e-35 122.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|119873112|ref|YP_931119.1| - 4.2e-20 72.1 9.9 6.1e-20 71.6 9.9 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|119873112|ref|YP_931119.1| - 5.4e-15 55.9 0.0 9.9e-15 55.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|119873112|ref|YP_931119.1| - 7.2e-06 25.7 0.0 1e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|119873112|ref|YP_931119.1| - 0.012 16.1 0.0 0.031 14.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase family 2 PAS_6 PF08348.11 gi|119873112|ref|YP_931119.1| - 0.18 11.6 0.0 0.34 10.8 0.0 1.3 1 0 0 1 1 1 0 YheO-like PAS domain NDK PF00334.19 gi|119873114|ref|YP_931121.1| - 1.8e-47 160.7 0.0 2.1e-26 92.5 0.0 2.0 2 0 0 2 2 2 2 Nucleoside diphosphate kinase Proton_antipo_M PF00361.20 gi|119873115|ref|YP_931122.1| - 1.9e-18 66.7 22.5 1.9e-18 66.7 22.5 2.9 1 1 1 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|119873116|ref|YP_931123.1| - 7.4e-48 163.2 24.7 2e-45 155.2 22.3 3.0 2 0 0 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119873116|ref|YP_931123.1| - 5.3e-07 29.6 0.8 5.3e-07 29.6 0.8 3.4 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|119873116|ref|YP_931123.1| - 0.0021 17.7 2.1 0.0021 17.7 2.1 3.6 4 0 0 4 4 4 1 NADH dehydrogenase subunit 5 C-terminus Proton_antipo_M PF00361.20 gi|119873117|ref|YP_931124.1| - 4.4e-46 157.4 27.9 4.4e-46 157.4 27.9 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|119873117|ref|YP_931124.1| - 2.4e-05 24.3 0.2 0.00034 20.6 0.2 3.1 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|119873118|ref|YP_931125.1| - 1.3e-10 40.9 11.3 1.7e-10 40.5 11.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Peptidase_M50B PF13398.6 gi|119873118|ref|YP_931125.1| - 0.11 12.1 6.3 0.12 12.0 6.3 1.0 1 0 0 1 1 1 0 Peptidase M50B-like DUF4418 PF14387.6 gi|119873118|ref|YP_931125.1| - 0.72 10.1 9.6 1.6 8.9 9.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4418) Oxidored_q3 PF00499.20 gi|119873119|ref|YP_931126.1| - 5e-05 23.0 19.7 8.2e-05 22.4 19.7 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4713 PF15831.5 gi|119873119|ref|YP_931126.1| - 0.098 13.1 4.4 0.098 13.1 4.4 2.7 4 0 0 4 4 4 0 Domain of unknown function (DUF4713) Fer4 PF00037.27 gi|119873120|ref|YP_931127.1| - 1.3e-13 50.1 13.2 4.3e-07 29.5 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119873120|ref|YP_931127.1| - 5.5e-10 40.0 5.9 0.00035 21.5 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|119873120|ref|YP_931127.1| - 2.3e-09 36.9 15.2 7.6e-05 22.6 5.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119873120|ref|YP_931127.1| - 3.1e-09 37.3 11.8 5.3e-09 36.5 11.8 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873120|ref|YP_931127.1| - 8.1e-09 35.5 9.2 1.3e-08 34.9 9.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119873120|ref|YP_931127.1| - 9.8e-08 32.0 7.8 0.00034 20.7 0.5 2.4 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119873120|ref|YP_931127.1| - 1.9e-07 31.4 1.5 0.0042 17.5 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119873120|ref|YP_931127.1| - 2.5e-07 31.1 1.8 0.016 15.7 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119873120|ref|YP_931127.1| - 2.5e-07 30.4 11.4 0.00038 20.4 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119873120|ref|YP_931127.1| - 3.6e-06 27.0 21.7 0.00014 21.9 13.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|119873120|ref|YP_931127.1| - 5.4e-06 26.5 11.0 0.0073 16.7 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|119873120|ref|YP_931127.1| - 0.0024 17.6 2.0 0.2 11.4 0.2 2.2 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.6 gi|119873120|ref|YP_931127.1| - 0.028 15.0 12.6 1 9.9 1.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|119873120|ref|YP_931127.1| - 0.05 13.8 12.5 0.082 13.1 2.2 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119873120|ref|YP_931127.1| - 0.069 14.1 17.7 0.21 12.6 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119873120|ref|YP_931127.1| - 0.082 13.7 6.7 1.2 9.9 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|119873120|ref|YP_931127.1| - 0.61 11.0 8.5 2.1 9.2 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|119873121|ref|YP_931128.1| - 1.3e-74 251.2 27.8 1.7e-74 250.9 27.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Lig_chan PF00060.26 gi|119873121|ref|YP_931128.1| - 0.92 9.3 6.4 1.8 8.4 0.4 3.0 2 1 0 2 2 2 0 Ligand-gated ion channel Complex1_49kDa PF00346.19 gi|119873122|ref|YP_931129.1| - 6.6e-76 255.0 0.0 8e-76 254.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GTP_cyclohydroI PF01227.22 gi|119873124|ref|YP_931131.1| - 1.4e-47 161.4 0.0 1.7e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I adh_short_C2 PF13561.6 gi|119873125|ref|YP_931132.1| - 3.8e-23 82.3 0.6 1e-22 80.9 0.6 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|119873125|ref|YP_931132.1| - 5.6e-23 81.4 1.3 5e-22 78.3 1.3 1.9 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|119873125|ref|YP_931132.1| - 1.8e-08 34.5 0.5 5.2e-07 29.7 0.5 2.0 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|119873125|ref|YP_931132.1| - 7.1e-07 28.9 1.4 2.1e-06 27.4 1.4 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family LDcluster4 PF18306.1 gi|119873125|ref|YP_931132.1| - 0.00013 21.6 1.1 0.0011 18.6 0.5 2.0 2 0 0 2 2 2 1 SLOG cluster4 family RmlD_sub_bind PF04321.17 gi|119873125|ref|YP_931132.1| - 0.0005 19.3 0.1 0.00072 18.7 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain DapB_N PF01113.20 gi|119873125|ref|YP_931132.1| - 0.028 14.5 0.4 0.047 13.8 0.4 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.6 gi|119873125|ref|YP_931132.1| - 0.028 14.3 0.5 0.028 14.3 0.5 1.5 2 0 0 2 2 2 0 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|119873125|ref|YP_931132.1| - 0.039 13.4 0.1 0.16 11.3 0.0 2.0 3 0 0 3 3 3 0 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|119873125|ref|YP_931132.1| - 0.04 12.9 0.2 0.05 12.6 0.2 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family ADH_zinc_N PF00107.26 gi|119873125|ref|YP_931132.1| - 0.043 13.8 1.0 0.25 11.3 1.0 2.0 1 1 0 1 1 1 0 Zinc-binding dehydrogenase CarboxypepD_reg PF13620.6 gi|119873126|ref|YP_931133.1| - 0.05 13.9 0.4 6 7.2 0.0 3.5 3 1 0 3 3 3 0 Carboxypeptidase regulatory-like domain KfrB PF18790.1 gi|119873126|ref|YP_931133.1| - 0.2 11.9 0.3 2.8 8.2 0.0 2.7 3 0 0 3 3 3 0 KfrB protein MarR_2 PF12802.7 gi|119873127|ref|YP_931134.1| - 1.3e-08 34.5 0.4 2.3e-08 33.8 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|119873127|ref|YP_931134.1| - 7.2e-06 25.9 0.2 1.3e-05 25.1 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|119873127|ref|YP_931134.1| - 7.5e-06 25.8 0.1 8.3e-05 22.5 0.0 2.5 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|119873127|ref|YP_931134.1| - 4.2e-05 23.0 0.9 6.7e-05 22.4 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119873127|ref|YP_931134.1| - 4.4e-05 23.3 0.1 0.0001 22.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119873127|ref|YP_931134.1| - 0.00014 21.8 0.3 0.00031 20.7 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 gi|119873127|ref|YP_931134.1| - 0.0015 18.2 0.1 0.0027 17.4 0.1 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain MarR PF01047.22 gi|119873127|ref|YP_931134.1| - 0.014 15.3 0.1 0.038 13.9 0.1 1.7 2 0 0 2 2 2 0 MarR family LexA_DNA_bind PF01726.16 gi|119873127|ref|YP_931134.1| - 0.015 15.1 3.4 0.056 13.2 2.1 2.3 2 1 0 2 2 2 0 LexA DNA binding domain HTH_11 PF08279.12 gi|119873127|ref|YP_931134.1| - 0.02 14.8 0.2 0.02 14.8 0.2 1.9 2 1 0 2 2 2 0 HTH domain HTH_8 PF02954.19 gi|119873127|ref|YP_931134.1| - 0.036 13.9 0.3 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_27 PF13463.6 gi|119873127|ref|YP_931134.1| - 0.039 14.5 0.7 0.17 12.4 0.7 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|119873127|ref|YP_931134.1| - 0.04 13.6 0.0 0.13 12.0 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|119873127|ref|YP_931134.1| - 0.067 13.0 1.4 0.33 10.8 1.4 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain HTH_10 PF04967.12 gi|119873127|ref|YP_931134.1| - 0.12 12.2 0.5 2.3 8.1 0.1 2.5 2 0 0 2 2 2 0 HTH DNA binding domain Cir_Bir_Yir PF06022.11 gi|119873128|ref|YP_931135.1| - 0.041 13.4 0.9 0.056 12.9 0.9 1.2 1 0 0 1 1 1 0 Plasmodium variant antigen protein Cir/Yir/Bir HTH_OrfB_IS605 PF12323.8 gi|119873129|ref|YP_931136.1| - 4.4e-06 26.1 0.1 4.4e-06 26.1 0.1 2.1 3 0 0 3 3 3 1 Helix-turn-helix domain OmdA PF13376.6 gi|119873129|ref|YP_931136.1| - 2.6 8.1 6.4 10 6.2 0.6 2.6 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated Peptidase_M1 PF01433.20 gi|119873130|ref|YP_931137.1| - 1.8e-48 165.0 0.0 3.5e-48 164.1 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|119873130|ref|YP_931137.1| - 8.6e-34 115.8 14.5 3.7e-12 46.5 2.7 4.0 2 1 1 4 4 4 3 HEAT repeats Peptidase_M1_N PF17900.1 gi|119873130|ref|YP_931137.1| - 1.6e-17 64.3 0.0 4e-17 63.0 0.0 1.7 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|119873130|ref|YP_931137.1| - 2.9e-12 46.0 21.0 0.02 15.5 0.2 7.5 7 0 0 7 7 7 5 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|119873130|ref|YP_931137.1| - 2.5e-10 39.7 3.3 1.2 9.6 0.0 6.6 7 0 0 7 7 7 3 HEAT repeat Vitellogenin_N PF01347.22 gi|119873130|ref|YP_931137.1| - 0.0011 17.5 0.8 0.07 11.5 0.1 2.2 1 1 1 2 2 2 2 Lipoprotein amino terminal region Cnd1 PF12717.7 gi|119873130|ref|YP_931137.1| - 0.0015 18.6 1.1 0.2 11.7 0.1 3.8 2 2 2 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.20 gi|119873130|ref|YP_931137.1| - 0.0073 14.9 0.1 0.12 10.9 0.0 2.2 2 0 0 2 2 2 1 Adaptin N terminal region Big_4 PF07532.11 gi|119873130|ref|YP_931137.1| - 0.15 11.8 0.0 0.48 10.2 0.0 1.9 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 4) DUF3458 PF11940.8 gi|119873130|ref|YP_931137.1| - 0.18 12.3 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) Ig-like fold RRF PF01765.19 gi|119873130|ref|YP_931137.1| - 0.26 11.2 1.5 0.57 10.1 1.5 1.5 1 0 0 1 1 1 0 Ribosome recycling factor HEAT_EZ PF13513.6 gi|119873130|ref|YP_931137.1| - 0.84 10.2 4.7 6.5 7.4 0.4 3.9 3 1 0 3 3 2 0 HEAT-like repeat UPRTase PF14681.6 gi|119873131|ref|YP_931138.1| - 3.1e-52 177.0 0.1 3.5e-52 176.8 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|119873131|ref|YP_931138.1| - 4e-08 32.9 0.9 6.3e-08 32.3 0.9 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ATP-synt_A PF00119.20 gi|119873132|ref|YP_931139.1| - 0.0011 19.0 4.8 0.0016 18.5 4.8 1.2 1 0 0 1 1 1 1 ATP synthase A chain Peptidase_A24 PF01478.18 gi|119873132|ref|YP_931139.1| - 0.004 17.5 8.1 0.0064 16.9 8.1 1.4 1 0 0 1 1 1 1 Type IV leader peptidase family BatA PF07584.11 gi|119873132|ref|YP_931139.1| - 1.4 9.3 8.8 18 5.8 8.7 2.7 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal bact-PGI_C PF10432.9 gi|119873133|ref|YP_931140.1| - 2.2e-16 60.3 0.1 8e-16 58.4 0.1 1.8 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|119873133|ref|YP_931140.1| - 4.2e-05 23.4 0.1 0.00033 20.5 0.0 2.0 2 0 0 2 2 2 1 SIS domain Helicase_C PF00271.31 gi|119873134|ref|YP_931141.1| - 2.4e-15 56.8 1.7 4e-15 56.1 0.5 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|119873134|ref|YP_931141.1| - 1.7e-14 54.2 0.0 8.5e-14 51.9 0.0 2.2 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|119873134|ref|YP_931141.1| - 3.2e-13 49.4 0.2 4.8e-13 48.9 0.2 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|119873134|ref|YP_931141.1| - 1e-08 35.1 0.1 5.7e-07 29.5 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|119873134|ref|YP_931141.1| - 5.2e-05 22.1 0.0 0.0013 17.5 0.0 2.5 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.6 gi|119873134|ref|YP_931141.1| - 0.034 14.3 2.2 0.057 13.6 0.0 2.1 1 1 1 2 2 2 0 Helicase C-terminal domain TrmB PF01978.19 gi|119873135|ref|YP_931142.1| - 4.4e-05 23.3 0.2 8e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|119873135|ref|YP_931142.1| - 9.1e-05 22.8 0.2 0.00015 22.1 0.2 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_5 PF01022.20 gi|119873135|ref|YP_931142.1| - 0.00058 19.7 0.2 0.001 18.9 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|119873135|ref|YP_931142.1| - 0.00066 19.5 0.1 0.0015 18.4 0.1 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit Replic_Relax PF13814.6 gi|119873135|ref|YP_931142.1| - 0.023 14.8 0.0 0.04 14.0 0.0 1.4 1 0 0 1 1 1 0 Replication-relaxation MarR PF01047.22 gi|119873135|ref|YP_931142.1| - 0.027 14.4 0.1 0.045 13.7 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|119873135|ref|YP_931142.1| - 0.038 14.0 0.1 0.055 13.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|119873135|ref|YP_931142.1| - 0.072 12.7 0.4 0.11 12.0 0.4 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|119873135|ref|YP_931142.1| - 0.088 12.6 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_17 PF12728.7 gi|119873135|ref|YP_931142.1| - 0.24 11.6 0.1 0.24 11.6 0.1 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain AAA_assoc_C PF09821.9 gi|119873136|ref|YP_931143.1| - 6.3e-05 23.5 0.1 9.9e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 C-terminal AAA-associated domain NusB PF01029.18 gi|119873136|ref|YP_931143.1| - 0.01 16.1 0.1 0.027 14.7 0.0 1.7 2 0 0 2 2 2 0 NusB family RhoGEF PF00621.20 gi|119873136|ref|YP_931143.1| - 0.011 16.0 0.0 0.028 14.7 0.0 1.7 1 1 1 2 2 2 0 RhoGEF domain ssDNA-exonuc_C PF10141.9 gi|119873137|ref|YP_931144.1| - 0.0059 16.3 0.3 0.0067 16.1 0.3 1.1 1 0 0 1 1 1 1 Single-strand DNA-specific exonuclease, C terminal domain Slx4 PF09494.10 gi|119873137|ref|YP_931144.1| - 0.0061 16.5 0.2 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 Slx4 endonuclease tRNA-synt_1 PF00133.22 gi|119873138|ref|YP_931145.1| - 1.5e-167 558.5 0.8 1.8e-167 558.2 0.8 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|119873138|ref|YP_931145.1| - 2.4e-31 108.7 1.0 5.3e-31 107.6 1.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|119873138|ref|YP_931145.1| - 3.3e-25 88.7 0.1 1.6e-09 37.0 0.1 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|119873138|ref|YP_931145.1| - 3.7e-08 33.1 0.0 9.1e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|119873138|ref|YP_931145.1| - 4.2e-06 26.3 0.0 0.0037 16.6 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|119873138|ref|YP_931145.1| - 0.00025 20.1 0.0 0.00074 18.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|119873138|ref|YP_931145.1| - 0.012 14.6 0.1 0.072 12.0 0.0 2.2 3 0 0 3 3 3 0 tRNA synthetases class I (R) HscB_4_cys PF18256.1 gi|119873138|ref|YP_931145.1| - 1.3 8.8 5.1 2.7 7.9 0.5 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif PMT_2 PF13231.6 gi|119873139|ref|YP_931146.1| - 1.9e-10 41.2 13.9 1.9e-10 41.2 13.9 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|119873139|ref|YP_931146.1| - 1.2e-07 31.6 18.4 1.2e-07 31.6 18.4 3.7 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_4TMC PF16192.5 gi|119873139|ref|YP_931146.1| - 0.01 15.4 0.0 0.01 15.4 0.0 2.6 3 1 0 3 3 3 0 C-terminal four TMM region of protein-O-mannosyltransferase Auto_anti-p27 PF06677.12 gi|119873140|ref|YP_931147.1| - 2.8e-11 43.4 0.7 4.2e-11 42.8 0.7 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|119873140|ref|YP_931147.1| - 0.00015 21.2 2.2 0.00025 20.5 2.2 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|119873140|ref|YP_931147.1| - 0.00066 19.6 0.8 0.0011 18.8 0.2 1.6 2 0 0 2 2 1 1 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|119873140|ref|YP_931147.1| - 0.0027 17.7 0.6 0.0044 17.0 0.6 1.3 1 0 0 1 1 1 1 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|119873140|ref|YP_931147.1| - 0.0028 17.5 0.3 0.0028 17.5 0.3 1.7 2 0 0 2 2 2 1 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|119873140|ref|YP_931147.1| - 0.013 15.4 2.7 0.046 13.7 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|119873140|ref|YP_931147.1| - 0.014 15.4 0.1 0.014 15.4 0.1 1.2 1 0 0 1 1 1 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|119873140|ref|YP_931147.1| - 0.015 15.3 4.5 0.061 13.4 4.5 2.1 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|119873140|ref|YP_931147.1| - 0.015 14.7 0.8 0.031 13.7 0.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|119873140|ref|YP_931147.1| - 0.025 14.3 0.5 0.037 13.7 0.5 1.2 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-FPG_IleRS PF06827.14 gi|119873140|ref|YP_931147.1| - 0.026 14.4 1.3 0.049 13.5 1.3 1.5 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS zf-RRPl_C4 PF17026.5 gi|119873140|ref|YP_931147.1| - 0.027 14.6 0.1 0.032 14.3 0.1 1.2 1 0 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type DZR PF12773.7 gi|119873140|ref|YP_931147.1| - 0.032 14.2 0.7 0.067 13.2 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|119873140|ref|YP_931147.1| - 0.045 14.2 1.6 6.3 7.3 0.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|119873140|ref|YP_931147.1| - 0.066 13.4 0.6 3.4 7.9 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain RPA_interact_C PF14768.6 gi|119873140|ref|YP_931147.1| - 0.078 13.5 1.0 0.11 13.1 1.0 1.4 1 1 0 1 1 1 0 Replication protein A interacting C-terminal Ribosomal_L37ae PF01780.19 gi|119873140|ref|YP_931147.1| - 0.089 12.9 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal L37ae protein family Thioredoxin_6 PF13848.6 gi|119873140|ref|YP_931147.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin-like domain zf-H2C2_2 PF13465.6 gi|119873140|ref|YP_931147.1| - 0.68 10.5 3.3 2 9.0 0.2 2.5 3 0 0 3 3 2 0 Zinc-finger double domain RIO1 PF01163.22 gi|119873141|ref|YP_931148.1| - 0.0038 16.9 0.0 0.0047 16.5 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Cas9_a PF18470.1 gi|119873141|ref|YP_931148.1| - 0.083 12.4 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Cas9 alpha-helical lobe domain YsaB PF13983.6 gi|119873141|ref|YP_931148.1| - 0.16 12.2 0.0 0.29 11.5 0.0 1.3 1 0 0 1 1 1 0 YsaB-like lipoprotein Choline_kinase PF01633.20 gi|119873141|ref|YP_931148.1| - 0.19 11.3 0.0 4.8 6.7 0.0 2.1 1 1 0 2 2 2 0 Choline/ethanolamine kinase PUA PF01472.20 gi|119873142|ref|YP_931149.1| - 4.7e-19 68.1 0.5 8.6e-19 67.3 0.5 1.4 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|119873142|ref|YP_931149.1| - 1.6e-06 28.3 1.1 2.5e-06 27.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|119873142|ref|YP_931149.1| - 1.3e-05 25.3 0.4 2.2e-05 24.7 0.4 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|119873142|ref|YP_931149.1| - 1.6e-05 25.5 0.0 4.6e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 Pre-PUA-like domain GCD14_N PF14801.6 gi|119873142|ref|YP_931149.1| - 0.093 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term TraF PF13728.6 gi|119873142|ref|YP_931149.1| - 0.093 12.5 0.1 5 6.9 0.0 2.1 2 0 0 2 2 2 0 F plasmid transfer operon protein HTH_3 PF01381.22 gi|119873143|ref|YP_931150.1| - 3.5e-13 49.4 0.2 2e-12 46.9 0.1 2.1 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|119873143|ref|YP_931150.1| - 2.2e-09 37.2 3.2 9.8e-09 35.1 0.7 2.6 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|119873143|ref|YP_931150.1| - 6.3e-09 36.1 1.3 2.2e-08 34.3 0.8 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|119873143|ref|YP_931150.1| - 4.7e-05 23.2 0.6 0.0046 16.9 0.0 3.2 2 1 1 3 3 3 1 HTH domain HTH_7 PF02796.15 gi|119873143|ref|YP_931150.1| - 0.00014 21.9 0.0 0.00034 20.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|119873143|ref|YP_931150.1| - 0.0008 19.1 0.1 0.0041 16.9 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.6 gi|119873143|ref|YP_931150.1| - 0.0057 16.5 0.1 0.016 15.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|119873143|ref|YP_931150.1| - 0.0059 17.0 0.0 0.021 15.2 0.0 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_22 PF13309.6 gi|119873143|ref|YP_931150.1| - 0.012 15.7 0.0 0.041 14.0 0.0 1.9 1 0 0 1 1 1 0 HTH domain MqsA_antitoxin PF15731.5 gi|119873143|ref|YP_931150.1| - 0.013 15.6 0.1 0.052 13.6 0.0 2.0 2 0 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Sigma70_r4 PF04545.16 gi|119873143|ref|YP_931150.1| - 0.019 14.5 0.7 0.057 13.0 0.4 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|119873143|ref|YP_931150.1| - 0.023 14.7 0.0 0.094 12.7 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain MerR PF00376.23 gi|119873143|ref|YP_931150.1| - 0.029 14.1 0.2 0.084 12.7 0.2 1.8 1 0 0 1 1 1 0 MerR family regulatory protein HTH_IclR PF09339.10 gi|119873143|ref|YP_931150.1| - 0.034 14.0 0.0 0.13 12.0 0.0 2.0 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|119873143|ref|YP_931150.1| - 0.049 13.4 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|119873143|ref|YP_931150.1| - 0.1 12.7 0.1 0.28 11.3 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TRM PF02005.16 gi|119873144|ref|YP_931151.1| - 7.9e-79 265.5 0.0 1.4e-78 264.7 0.0 1.4 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|119873144|ref|YP_931151.1| - 5e-07 29.7 0.0 7.2e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|119873144|ref|YP_931151.1| - 0.00041 20.1 0.0 0.00065 19.5 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase Methyltransf_31 PF13847.6 gi|119873144|ref|YP_931151.1| - 0.00052 19.8 0.0 0.0013 18.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|119873144|ref|YP_931151.1| - 0.00094 18.9 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|119873144|ref|YP_931151.1| - 0.0019 17.7 0.0 0.0047 16.5 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|119873144|ref|YP_931151.1| - 0.013 16.2 0.0 0.026 15.2 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain AAA_17 PF13207.6 gi|119873145|ref|YP_931152.1| - 2.3e-17 63.7 0.0 3.7e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|119873145|ref|YP_931152.1| - 1.1e-15 58.3 0.0 1.5e-15 57.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|119873145|ref|YP_931152.1| - 4.8e-06 26.8 0.0 0.00033 20.8 0.0 2.2 1 1 1 2 2 2 1 Cytidylate kinase-like family ADK PF00406.22 gi|119873145|ref|YP_931152.1| - 1.4e-05 25.3 0.0 6.8e-05 23.0 0.0 1.9 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|119873145|ref|YP_931152.1| - 4.1e-05 23.8 0.2 0.0006 20.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|119873145|ref|YP_931152.1| - 0.00067 19.8 0.1 0.001 19.2 0.1 1.3 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|119873145|ref|YP_931152.1| - 0.0017 18.2 0.1 0.72 9.7 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|119873145|ref|YP_931152.1| - 0.0018 18.1 1.5 0.34 10.6 0.1 2.3 2 0 0 2 2 2 2 Cytidylate kinase Zeta_toxin PF06414.12 gi|119873145|ref|YP_931152.1| - 0.0058 15.9 0.3 0.026 13.8 0.0 2.0 2 1 1 3 3 3 1 Zeta toxin AAA_22 PF13401.6 gi|119873145|ref|YP_931152.1| - 0.0071 16.6 0.1 0.017 15.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|119873145|ref|YP_931152.1| - 0.0085 15.8 0.3 0.29 10.8 0.0 2.1 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.20 gi|119873145|ref|YP_931152.1| - 0.014 15.2 0.0 0.021 14.8 0.0 1.5 1 1 0 1 1 1 0 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|119873145|ref|YP_931152.1| - 0.018 14.7 0.2 5.4 6.6 0.0 2.5 2 1 1 3 3 3 0 Thymidylate kinase KTI12 PF08433.10 gi|119873145|ref|YP_931152.1| - 0.019 14.4 0.1 0.034 13.6 0.1 1.6 1 1 0 1 1 1 0 Chromatin associated protein KTI12 ABC_tran PF00005.27 gi|119873145|ref|YP_931152.1| - 0.026 15.0 0.0 0.036 14.6 0.0 1.4 1 1 0 1 1 1 0 ABC transporter ATP_bind_2 PF03668.15 gi|119873145|ref|YP_931152.1| - 0.045 13.0 0.6 0.081 12.2 0.6 1.5 1 1 0 1 1 1 0 P-loop ATPase protein family AAA_28 PF13521.6 gi|119873145|ref|YP_931152.1| - 0.047 13.9 0.2 0.092 13.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|119873145|ref|YP_931152.1| - 0.051 13.3 0.4 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|119873145|ref|YP_931152.1| - 0.072 13.1 0.0 0.19 11.7 0.0 1.6 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|119873145|ref|YP_931152.1| - 0.076 12.7 0.2 0.13 12.0 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119873145|ref|YP_931152.1| - 0.1 13.0 0.2 0.17 12.3 0.2 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|119873145|ref|YP_931152.1| - 0.25 11.7 0.8 0.62 10.4 0.1 1.9 2 1 0 2 2 2 0 AAA domain RNA_binding PF01877.17 gi|119873146|ref|YP_931153.1| - 2.8e-15 56.6 0.0 3.8e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 RNA binding UPF0020 PF01170.18 gi|119873147|ref|YP_931154.1| - 4.8e-10 39.4 0.0 1e-07 31.8 0.0 2.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|119873147|ref|YP_931154.1| - 0.00052 19.8 0.0 0.00098 18.9 0.0 1.5 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|119873147|ref|YP_931154.1| - 0.017 14.8 0.0 0.076 12.7 0.0 1.9 2 0 0 2 2 2 0 DNA methylase Methyltransf_25 PF13649.6 gi|119873147|ref|YP_931154.1| - 0.023 15.4 0.0 0.05 14.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|119873147|ref|YP_931154.1| - 0.046 14.4 0.0 0.2 12.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain AviRa PF11599.8 gi|119873147|ref|YP_931154.1| - 0.19 11.2 0.0 2.3 7.6 0.0 2.1 1 1 1 2 2 2 0 RRNA methyltransferase AviRa DUF373 PF04123.13 gi|119873148|ref|YP_931155.1| - 4.6e-74 249.8 12.7 5.4e-74 249.6 12.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Spc7 PF08317.11 gi|119873149|ref|YP_931156.1| - 2.5e-06 26.6 41.5 4e-05 22.6 6.6 2.3 1 1 1 2 2 2 2 Spc7 kinetochore protein Sec34 PF04136.15 gi|119873149|ref|YP_931156.1| - 1.8e-05 24.7 25.8 0.012 15.5 6.6 4.3 2 1 3 5 5 5 2 Sec34-like family DUF1664 PF07889.12 gi|119873149|ref|YP_931156.1| - 1.8e-05 24.7 30.0 0.031 14.3 2.4 4.3 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|119873149|ref|YP_931156.1| - 3.3e-05 22.3 41.0 7.7e-05 21.1 9.1 2.2 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|119873149|ref|YP_931156.1| - 4.7e-05 23.5 20.1 0.0045 17.0 7.7 3.1 2 2 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Mod_r PF07200.13 gi|119873149|ref|YP_931156.1| - 0.00019 21.6 35.3 0.0002 21.5 10.8 3.9 2 2 2 4 4 4 2 Modifier of rudimentary (Mod(r)) protein TPR_MLP1_2 PF07926.12 gi|119873149|ref|YP_931156.1| - 0.0013 18.8 38.3 0.012 15.7 0.8 4.3 2 2 3 5 5 5 4 TPR/MLP1/MLP2-like protein DUF724 PF05266.14 gi|119873149|ref|YP_931156.1| - 0.0038 17.1 34.5 0.0038 17.1 13.6 3.2 2 1 1 3 3 3 3 Protein of unknown function (DUF724) RasGAP_C PF03836.15 gi|119873149|ref|YP_931156.1| - 0.0047 17.1 8.8 0.0047 17.1 8.8 4.3 2 2 3 5 5 5 1 RasGAP C-terminus MscS_porin PF12795.7 gi|119873149|ref|YP_931156.1| - 0.005 16.4 39.5 0.11 12.0 6.2 2.7 2 1 1 3 3 3 2 Mechanosensitive ion channel porin domain HsbA PF12296.8 gi|119873149|ref|YP_931156.1| - 0.0053 17.2 5.2 4.3 7.8 0.0 3.8 3 1 1 4 4 4 0 Hydrophobic surface binding protein A TACC_C PF05010.14 gi|119873149|ref|YP_931156.1| - 0.011 15.6 7.0 0.011 15.6 7.0 2.4 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF948 PF06103.11 gi|119873149|ref|YP_931156.1| - 0.013 15.8 14.2 0.014 15.6 0.4 4.1 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF4201 PF13870.6 gi|119873149|ref|YP_931156.1| - 0.013 15.2 47.6 0.19 11.5 5.4 4.3 2 2 2 4 4 4 0 Domain of unknown function (DUF4201) DUF4407 PF14362.6 gi|119873149|ref|YP_931156.1| - 0.014 14.8 24.2 0.023 14.1 1.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|119873149|ref|YP_931156.1| - 0.017 15.2 8.7 0.017 15.2 8.7 3.0 2 1 1 3 3 3 0 Laminin Domain II GAS PF13851.6 gi|119873149|ref|YP_931156.1| - 0.018 14.4 43.2 0.017 14.5 25.2 2.9 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|119873149|ref|YP_931156.1| - 0.018 15.5 23.8 0.27 11.7 6.7 4.8 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Sec8_exocyst PF04048.14 gi|119873149|ref|YP_931156.1| - 0.02 14.8 0.3 0.02 14.8 0.3 4.3 2 2 1 3 3 2 0 Sec8 exocyst complex component specific domain OmpH PF03938.14 gi|119873149|ref|YP_931156.1| - 0.02 15.2 40.9 0.029 14.7 4.0 3.2 2 1 1 3 3 3 0 Outer membrane protein (OmpH-like) LPP PF04728.13 gi|119873149|ref|YP_931156.1| - 0.022 15.1 16.0 0.15 12.4 0.8 4.9 3 1 1 4 4 4 0 Lipoprotein leucine-zipper IFT57 PF10498.9 gi|119873149|ref|YP_931156.1| - 0.024 13.6 34.9 0.058 12.4 14.0 2.9 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 DUF745 PF05335.13 gi|119873149|ref|YP_931156.1| - 0.03 14.1 0.3 0.03 14.1 0.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF745) APG6_N PF17675.1 gi|119873149|ref|YP_931156.1| - 0.03 14.9 45.7 0.07 13.7 23.4 3.9 1 1 1 3 3 3 0 Apg6 coiled-coil region Tup_N PF08581.10 gi|119873149|ref|YP_931156.1| - 0.03 14.6 2.1 0.03 14.6 2.1 4.3 2 2 2 4 4 4 0 Tup N-terminal ZapB PF06005.12 gi|119873149|ref|YP_931156.1| - 0.042 14.3 3.3 0.042 14.3 3.3 5.0 2 2 3 5 5 5 0 Cell division protein ZapB AAA_13 PF13166.6 gi|119873149|ref|YP_931156.1| - 0.05 12.3 35.5 3.6 6.1 35.5 2.1 1 1 0 1 1 1 0 AAA domain Seryl_tRNA_N PF02403.22 gi|119873149|ref|YP_931156.1| - 0.054 13.7 48.9 0.11 12.7 21.3 4.9 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain COG2 PF06148.11 gi|119873149|ref|YP_931156.1| - 0.061 13.4 31.3 1.1 9.4 0.4 5.2 1 1 4 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 JmjN PF02375.17 gi|119873149|ref|YP_931156.1| - 0.084 12.9 0.2 0.23 11.5 0.2 1.7 1 0 0 1 1 1 0 jmjN domain CENP-F_leu_zip PF10473.9 gi|119873149|ref|YP_931156.1| - 0.089 12.8 41.4 0.24 11.4 8.5 3.1 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|119873149|ref|YP_931156.1| - 0.13 12.4 37.0 0.15 12.3 20.9 2.9 2 2 0 2 2 2 0 Autophagy protein 16 (ATG16) Wtap PF17098.5 gi|119873149|ref|YP_931156.1| - 0.15 12.0 20.8 0.11 12.5 0.5 4.2 3 1 2 5 5 4 0 WTAP/Mum2p family Golgin_A5 PF09787.9 gi|119873149|ref|YP_931156.1| - 0.15 11.5 39.5 1.7 8.0 25.1 2.5 1 1 1 2 2 2 0 Golgin subfamily A member 5 eIF3_N PF09440.10 gi|119873149|ref|YP_931156.1| - 0.18 12.2 23.8 0.17 12.3 1.0 4.8 2 2 1 4 4 4 0 eIF3 subunit 6 N terminal domain Filament PF00038.21 gi|119873149|ref|YP_931156.1| - 0.19 11.3 40.3 0.16 11.5 6.2 3.2 1 1 2 3 3 3 0 Intermediate filament protein DUF4200 PF13863.6 gi|119873149|ref|YP_931156.1| - 0.2 12.0 54.8 0.61 10.5 32.6 4.2 1 1 1 3 3 3 0 Domain of unknown function (DUF4200) WXG100 PF06013.12 gi|119873149|ref|YP_931156.1| - 0.26 11.6 9.5 2.2 8.6 1.7 4.1 2 2 1 3 3 3 0 Proteins of 100 residues with WXG Atg14 PF10186.9 gi|119873149|ref|YP_931156.1| - 0.33 10.0 48.9 0.017 14.2 8.8 3.4 1 1 2 3 3 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4239 PF14023.6 gi|119873149|ref|YP_931156.1| - 0.45 10.2 10.9 0.071 12.8 3.6 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF4239) DUF4618 PF15397.6 gi|119873149|ref|YP_931156.1| - 0.48 9.8 38.4 7 6.0 0.7 4.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) FPP PF05911.11 gi|119873149|ref|YP_931156.1| - 0.54 8.4 37.5 0.45 8.6 23.8 2.0 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil FapA PF03961.13 gi|119873149|ref|YP_931156.1| - 0.61 8.6 45.1 0.0064 15.1 8.1 3.1 2 1 1 3 3 2 0 Flagellar Assembly Protein A CENP-H PF05837.12 gi|119873149|ref|YP_931156.1| - 0.65 10.4 39.3 0.85 10.0 6.5 3.9 2 1 1 3 3 3 0 Centromere protein H (CENP-H) Fez1 PF06818.15 gi|119873149|ref|YP_931156.1| - 0.66 10.4 33.6 1.8e+04 -4.4 33.6 2.6 1 1 0 1 1 0 0 Fez1 SHE3 PF17078.5 gi|119873149|ref|YP_931156.1| - 0.81 9.4 33.2 0.32 10.7 4.7 2.6 1 1 0 2 2 2 0 SWI5-dependent HO expression protein 3 HAP1_N PF04849.13 gi|119873149|ref|YP_931156.1| - 1.1 8.4 35.5 0.061 12.5 6.5 3.0 2 1 1 3 3 3 0 HAP1 N-terminal conserved region MCPsignal PF00015.21 gi|119873149|ref|YP_931156.1| - 1.1 9.0 18.1 3.5 7.4 6.0 3.3 2 2 2 4 4 4 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2730 PF10805.8 gi|119873149|ref|YP_931156.1| - 1.2 9.3 20.5 0.15 12.2 3.6 3.9 2 2 2 4 4 4 0 Protein of unknown function (DUF2730) V_ATPase_I PF01496.19 gi|119873149|ref|YP_931156.1| - 1.3 6.8 27.8 0.64 7.9 15.6 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family FUSC PF04632.12 gi|119873149|ref|YP_931156.1| - 1.4 7.4 5.0 7.3 5.0 4.5 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family Cob_adeno_trans PF01923.18 gi|119873149|ref|YP_931156.1| - 1.7 8.8 16.5 7 6.8 1.1 3.0 1 1 2 3 3 3 0 Cobalamin adenosyltransferase FlaC_arch PF05377.11 gi|119873149|ref|YP_931156.1| - 1.7 9.1 30.1 1.5 9.3 0.9 6.1 2 2 3 6 6 6 0 Flagella accessory protein C (FlaC) YabA PF06156.13 gi|119873149|ref|YP_931156.1| - 1.9 9.2 36.2 4.7 7.9 1.8 4.4 1 1 3 4 4 4 0 Initiation control protein YabA DUF2203 PF09969.9 gi|119873149|ref|YP_931156.1| - 2 9.1 26.6 26 5.6 10.9 4.2 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) TMPIT PF07851.13 gi|119873149|ref|YP_931156.1| - 2.4 7.3 32.9 0.32 10.2 2.7 3.7 1 1 4 5 5 5 0 TMPIT-like protein DUF3450 PF11932.8 gi|119873149|ref|YP_931156.1| - 2.5 7.3 38.6 0.3 10.4 3.2 4.2 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) Occludin_ELL PF07303.13 gi|119873149|ref|YP_931156.1| - 2.8 8.7 27.9 1.5 9.6 0.6 4.6 2 2 2 4 4 4 0 Occludin homology domain T3SSipB PF16535.5 gi|119873149|ref|YP_931156.1| - 2.9 8.4 17.2 27 5.2 0.1 2.3 2 0 0 2 2 2 0 Type III cell invasion protein SipB TraF_2 PF13729.6 gi|119873149|ref|YP_931156.1| - 3.4 6.9 6.7 12 5.2 0.2 2.7 2 1 1 3 3 3 0 F plasmid transfer operon, TraF, protein MtrG PF04210.13 gi|119873149|ref|YP_931156.1| - 4.2 7.3 6.0 5.7 6.9 0.2 3.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3541 PF12060.8 gi|119873149|ref|YP_931156.1| - 4.4 6.9 10.9 6.1 6.5 4.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3541) Tweety PF04906.13 gi|119873149|ref|YP_931156.1| - 5.4 5.6 14.8 0.24 10.0 2.3 2.6 1 1 2 3 3 3 0 Tweety Laminin_I PF06008.14 gi|119873149|ref|YP_931156.1| - 5.6 6.6 34.6 0.036 13.8 5.2 2.3 2 0 0 2 2 2 0 Laminin Domain I PI3K_P85_iSH2 PF16454.5 gi|119873149|ref|YP_931156.1| - 5.8 6.5 40.8 2.9 7.5 22.0 4.3 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Fib_alpha PF08702.10 gi|119873149|ref|YP_931156.1| - 5.9 7.1 36.4 0.29 11.3 10.4 3.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Prefoldin PF02996.17 gi|119873149|ref|YP_931156.1| - 7.1 6.6 38.6 2.8 7.9 1.0 6.4 2 2 5 7 7 7 0 Prefoldin subunit UPF0242 PF06785.11 gi|119873149|ref|YP_931156.1| - 7.8 6.6 44.1 0.79 9.8 8.9 3.2 1 1 1 2 2 1 0 Uncharacterised protein family (UPF0242) N-terminus PI_PP_I PF18363.1 gi|119873149|ref|YP_931156.1| - 9.7 6.4 11.6 2.9 8.1 1.0 3.9 1 1 4 5 5 5 0 Phosphoinositide phosphatase insertion domain HTH_3 PF01381.22 gi|119873150|ref|YP_931157.1| - 1.1e-07 31.8 0.0 2e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|119873150|ref|YP_931157.1| - 4.8e-07 29.7 0.0 1.2e-06 28.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|119873150|ref|YP_931157.1| - 4.9e-07 30.0 0.0 9.2e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|119873150|ref|YP_931157.1| - 0.053 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L13e PF01294.18 gi|119873151|ref|YP_931158.1| - 7.4e-11 42.2 0.0 7.4e-11 42.2 0.0 2.1 2 1 0 2 2 2 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|119873151|ref|YP_931158.1| - 1.1e-05 25.2 3.3 1.3e-05 25.0 2.1 1.7 1 1 0 1 1 1 1 Ribosomal L15 30K_MP_core PF17644.1 gi|119873154|ref|YP_931161.1| - 0.0057 16.5 0.0 0.0066 16.3 0.0 1.1 1 0 0 1 1 1 1 Core domain of 30K viral movement proteins Poly_export PF02563.16 gi|119873154|ref|YP_931161.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.3 1 1 0 1 1 1 0 Polysaccharide biosynthesis/export protein TFIIB PF00382.19 gi|119873155|ref|YP_931162.1| - 1.1e-32 111.9 2.9 8.3e-18 64.2 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|119873155|ref|YP_931162.1| - 6.5e-17 60.8 0.4 1.1e-16 60.1 0.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|119873155|ref|YP_931162.1| - 2.5e-09 37.0 0.4 3.2e-05 23.7 0.3 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|119873155|ref|YP_931162.1| - 1.2e-06 28.6 0.0 0.0016 18.5 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_11 PF08279.12 gi|119873155|ref|YP_931162.1| - 0.00032 20.6 0.1 1.3 9.0 0.0 2.9 3 0 0 3 3 3 2 HTH domain Desulfoferrod_N PF06397.12 gi|119873155|ref|YP_931162.1| - 0.00041 19.9 4.8 0.0013 18.3 4.8 1.9 1 1 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain TFIIB_C_1 PF18542.1 gi|119873155|ref|YP_931162.1| - 0.0044 17.0 4.5 0.0054 16.7 2.6 2.1 2 0 0 2 2 2 1 Transcription factor IIB C-terminal module 1 Ribosomal_S27e PF01667.17 gi|119873155|ref|YP_931162.1| - 0.015 15.0 0.6 0.027 14.2 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein S27 HTH_Tnp_ISL3 PF13542.6 gi|119873155|ref|YP_931162.1| - 0.019 14.3 0.7 1.1 8.8 0.0 3.3 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 Zn_Tnp_IS91 PF14319.6 gi|119873155|ref|YP_931162.1| - 0.034 14.2 0.0 0.09 12.8 0.0 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain HTH_AsnC-type PF13404.6 gi|119873155|ref|YP_931162.1| - 0.041 13.7 0.1 1.8 8.5 0.0 2.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Prim_Zn_Ribbon PF08273.12 gi|119873155|ref|YP_931162.1| - 0.05 13.9 0.6 0.11 12.8 0.6 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF2318 PF10080.9 gi|119873155|ref|YP_931162.1| - 0.063 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn_ribbon_SprT PF17283.2 gi|119873155|ref|YP_931162.1| - 0.1 12.5 0.0 0.29 11.1 0.0 1.8 1 0 0 1 1 1 0 SprT-like zinc ribbon domain RB_B PF01857.20 gi|119873155|ref|YP_931162.1| - 0.13 12.3 0.1 0.25 11.4 0.1 1.4 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain Lar_restr_allev PF14354.6 gi|119873155|ref|YP_931162.1| - 0.17 12.3 0.1 0.37 11.2 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|119873155|ref|YP_931162.1| - 0.26 11.1 1.5 0.47 10.2 1.5 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain AAA PF00004.29 gi|119873156|ref|YP_931163.1| - 3.8e-15 56.5 0.0 1.2e-14 54.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|119873156|ref|YP_931163.1| - 4.2e-15 55.9 0.0 4.3e-10 39.6 0.2 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|119873156|ref|YP_931163.1| - 8.4e-12 45.4 0.0 3.2e-11 43.5 0.0 2.0 2 0 0 2 2 2 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|119873156|ref|YP_931163.1| - 6.6e-09 35.7 0.0 2.8e-08 33.7 0.0 2.1 2 1 1 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|119873156|ref|YP_931163.1| - 8.2e-08 32.5 0.1 2.5e-07 31.0 0.1 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|119873156|ref|YP_931163.1| - 8.2e-08 32.8 0.1 0.00036 21.0 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|119873156|ref|YP_931163.1| - 2.9e-07 30.9 0.7 0.061 13.6 0.0 3.2 2 1 1 3 3 3 2 AAA domain AAA_14 PF13173.6 gi|119873156|ref|YP_931163.1| - 4.2e-07 30.0 0.0 5.1e-06 26.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|119873156|ref|YP_931163.1| - 1.1e-05 25.4 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|119873156|ref|YP_931163.1| - 1.5e-05 25.6 0.0 0.00062 20.3 0.0 2.7 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|119873156|ref|YP_931163.1| - 1.6e-05 24.9 0.0 4.3e-05 23.5 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain DNA_pol3_delta PF06144.13 gi|119873156|ref|YP_931163.1| - 3.5e-05 23.6 0.0 6.2e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_5 PF07728.14 gi|119873156|ref|YP_931163.1| - 0.00012 22.1 0.1 0.00048 20.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|119873156|ref|YP_931163.1| - 0.00012 21.9 0.0 0.00027 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|119873156|ref|YP_931163.1| - 0.00016 21.7 0.0 0.004 17.2 0.0 2.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|119873156|ref|YP_931163.1| - 0.0002 21.0 0.0 0.00038 20.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|119873156|ref|YP_931163.1| - 0.00027 20.4 0.1 0.0054 16.1 0.0 2.6 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|119873156|ref|YP_931163.1| - 0.00044 19.8 0.0 0.36 10.2 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_30 PF13604.6 gi|119873156|ref|YP_931163.1| - 0.0008 19.2 0.0 0.0039 16.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|119873156|ref|YP_931163.1| - 0.0015 18.7 0.0 0.0033 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|119873156|ref|YP_931163.1| - 0.0019 18.0 0.0 0.0042 16.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.22 gi|119873156|ref|YP_931163.1| - 0.0031 17.9 0.0 0.0089 16.4 0.0 1.7 2 0 0 2 2 1 1 RNA helicase AAA_7 PF12775.7 gi|119873156|ref|YP_931163.1| - 0.0031 17.0 0.0 0.013 15.0 0.0 2.0 2 1 0 2 2 2 1 P-loop containing dynein motor region DEAD PF00270.29 gi|119873156|ref|YP_931163.1| - 0.0069 16.2 0.3 0.14 11.9 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase TIP49 PF06068.13 gi|119873156|ref|YP_931163.1| - 0.0075 15.5 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|119873156|ref|YP_931163.1| - 0.0082 15.9 0.0 0.022 14.5 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein TniB PF05621.11 gi|119873156|ref|YP_931163.1| - 0.011 15.2 0.1 0.29 10.5 0.0 2.3 1 1 1 2 2 2 0 Bacterial TniB protein AAA_19 PF13245.6 gi|119873156|ref|YP_931163.1| - 0.014 15.8 0.1 0.14 12.5 0.0 2.3 2 1 1 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|119873156|ref|YP_931163.1| - 0.02 15.1 0.0 0.055 13.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|119873156|ref|YP_931163.1| - 0.035 14.0 0.0 0.24 11.3 0.0 2.0 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|119873156|ref|YP_931163.1| - 0.049 12.9 0.1 0.82 8.8 0.1 2.2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|119873156|ref|YP_931163.1| - 0.053 13.3 0.0 0.081 12.6 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_2 PF07724.14 gi|119873156|ref|YP_931163.1| - 0.11 12.5 0.0 0.38 10.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) AAA_23 PF13476.6 gi|119873156|ref|YP_931163.1| - 0.12 12.9 0.1 0.63 10.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119873156|ref|YP_931163.1| - 0.12 12.2 0.0 5.7 6.8 0.0 2.5 2 1 1 3 3 2 0 NACHT domain ABC_tran PF00005.27 gi|119873156|ref|YP_931163.1| - 0.13 12.8 0.0 0.34 11.4 0.0 2.0 1 1 0 1 1 1 0 ABC transporter Parvo_NS1 PF01057.17 gi|119873156|ref|YP_931163.1| - 0.22 10.6 0.0 0.42 9.7 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 DUF562 PF04763.12 gi|119873157|ref|YP_931164.1| - 0.038 13.4 0.1 0.092 12.2 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF562) PIN PF01850.21 gi|119873157|ref|YP_931164.1| - 0.66 10.5 3.9 0.7 10.4 0.7 2.0 1 1 0 2 2 2 0 PIN domain TGS PF02824.21 gi|119873158|ref|YP_931165.1| - 1.7e-16 60.0 0.1 3.4e-16 59.0 0.1 1.5 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.23 gi|119873158|ref|YP_931165.1| - 5.6e-10 39.3 0.0 1.5e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase MMR_HSR1_Xtn PF16897.5 gi|119873158|ref|YP_931165.1| - 9.9e-08 32.0 0.0 2.8e-07 30.5 0.0 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain YchF-GTPase_C PF06071.13 gi|119873158|ref|YP_931165.1| - 0.0033 17.6 0.2 0.13 12.5 0.2 2.5 1 1 0 1 1 1 1 Protein of unknown function (DUF933) FeoB_N PF02421.18 gi|119873158|ref|YP_931165.1| - 0.0064 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B AAA_16 PF13191.6 gi|119873158|ref|YP_931165.1| - 0.011 16.2 0.0 0.026 14.9 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.23 gi|119873158|ref|YP_931165.1| - 0.017 15.2 0.1 0.63 10.1 0.0 2.4 1 1 1 2 2 2 0 Dynamin family AAA_28 PF13521.6 gi|119873158|ref|YP_931165.1| - 0.021 15.1 0.1 0.058 13.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|119873158|ref|YP_931165.1| - 0.12 12.1 0.3 9.7 5.9 0.0 3.2 4 0 0 4 4 4 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|119873158|ref|YP_931165.1| - 0.13 12.5 0.0 0.74 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Glyco_transf_20 PF00982.21 gi|119873158|ref|YP_931165.1| - 0.19 10.4 0.1 0.28 9.8 0.1 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 20 ECH_1 PF00378.20 gi|119873159|ref|YP_931166.1| - 3.3e-15 56.1 0.0 6.2e-15 55.2 0.0 1.4 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|119873159|ref|YP_931166.1| - 0.0079 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Iso_dh PF00180.20 gi|119873160|ref|YP_931167.1| - 2e-95 319.9 0.0 2.3e-95 319.7 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase TAF PF02969.17 gi|119873160|ref|YP_931167.1| - 0.12 12.6 0.0 0.31 11.2 0.0 1.7 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) Acetyltransf_1 PF00583.25 gi|119873161|ref|YP_931168.1| - 1.3e-16 60.8 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|119873161|ref|YP_931168.1| - 1.4e-13 50.9 0.0 1.8e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|119873161|ref|YP_931168.1| - 2.2e-13 50.4 0.0 3.3e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|119873161|ref|YP_931168.1| - 1.4e-09 38.3 0.0 1.7e-09 38.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|119873161|ref|YP_931168.1| - 1.3e-08 34.7 0.0 1.8e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|119873161|ref|YP_931168.1| - 1.5e-08 34.8 0.0 5.5e-08 33.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|119873161|ref|YP_931168.1| - 0.00034 21.3 0.0 0.00045 20.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|119873161|ref|YP_931168.1| - 0.0025 17.9 0.0 0.0042 17.2 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|119873161|ref|YP_931168.1| - 0.0027 17.2 0.4 0.021 14.3 0.4 2.0 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_6 PF13480.7 gi|119873161|ref|YP_931168.1| - 0.017 15.3 0.0 0.039 14.1 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|119873161|ref|YP_931168.1| - 0.077 12.7 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ NMD3 PF04981.13 gi|119873162|ref|YP_931169.1| - 1.9e-37 129.1 0.4 2.4e-37 128.7 0.4 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.6 gi|119873162|ref|YP_931169.1| - 0.00067 19.0 1.2 1.5 8.3 0.1 3.3 3 0 0 3 3 3 1 zinc-ribbon domain zf-BED PF02892.15 gi|119873162|ref|YP_931169.1| - 0.0022 18.0 1.5 2 8.5 0.1 3.5 3 0 0 3 3 3 1 BED zinc finger PyrI_C PF02748.15 gi|119873162|ref|YP_931169.1| - 0.081 12.8 7.2 8.5 6.4 0.1 3.7 3 0 0 3 3 3 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-C2HC5 PF06221.13 gi|119873162|ref|YP_931169.1| - 0.21 11.6 2.6 3.7 7.6 0.2 3.1 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-C2H2_11 PF16622.5 gi|119873162|ref|YP_931169.1| - 1 9.2 3.2 2.3 8.0 0.4 2.6 2 0 0 2 2 2 0 zinc-finger C2H2-type zf-RING_7 PF02591.15 gi|119873162|ref|YP_931169.1| - 1 9.6 5.4 1 9.6 0.1 3.0 3 0 0 3 3 3 0 C4-type zinc ribbon domain zf-Di19 PF05605.12 gi|119873162|ref|YP_931169.1| - 1.6 9.1 4.4 3.8 7.9 2.1 2.6 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-C2HC_2 PF13913.6 gi|119873162|ref|YP_931169.1| - 2 8.4 11.0 0.31 11.0 0.6 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-CHCC PF10276.9 gi|119873162|ref|YP_931169.1| - 2.2 8.4 8.5 3.2 7.9 0.4 3.3 3 0 0 3 3 3 0 Zinc-finger domain Zn-ribbon_8 PF09723.10 gi|119873162|ref|YP_931169.1| - 3.3 7.9 7.3 14 5.9 0.2 2.8 3 0 0 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|119873162|ref|YP_931169.1| - 4.3 7.4 6.2 22 5.1 0.1 2.7 2 1 0 2 2 2 0 zinc-ribbons DNA_methylase PF00145.17 gi|119873163|ref|YP_931170.1| - 4.4e-58 197.2 0.0 1e-54 186.2 0.0 2.1 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|119873163|ref|YP_931170.1| - 0.035 13.7 0.1 0.057 13.0 0.1 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase CRAL_TRIO_N PF03765.15 gi|119873164|ref|YP_931171.1| - 0.012 15.8 0.1 0.024 14.8 0.1 1.6 1 1 0 1 1 1 0 CRAL/TRIO, N-terminal domain tRNA_synthFbeta PF17759.1 gi|119873166|ref|YP_931173.1| - 7.1e-18 64.8 0.0 1.5e-17 63.8 0.0 1.5 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|119873166|ref|YP_931173.1| - 5.4e-12 45.8 0.4 6.9e-08 32.7 0.1 4.1 4 0 0 4 4 4 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|119873166|ref|YP_931173.1| - 2.3e-11 43.7 0.1 9.5e-11 41.7 0.0 1.9 2 0 0 2 2 2 1 B3/4 domain tRNA-synt_2d PF01409.20 gi|119873166|ref|YP_931173.1| - 0.039 13.4 0.0 0.31 10.5 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) RNA_POL_M_15KD PF02150.16 gi|119873168|ref|YP_931175.1| - 0.045 13.6 0.3 0.091 12.7 0.3 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-FPG_IleRS PF06827.14 gi|119873168|ref|YP_931175.1| - 0.052 13.4 5.6 0.55 10.2 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS YacG PF03884.14 gi|119873168|ref|YP_931175.1| - 0.06 13.1 0.3 0.098 12.4 0.3 1.3 1 0 0 1 1 1 0 DNA gyrase inhibitor YacG DUF4909 PF16253.5 gi|119873170|ref|YP_931177.1| - 0.056 13.3 0.0 0.065 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4909) tRNA_edit PF04073.15 gi|119873171|ref|YP_931178.1| - 2.2e-20 73.0 0.0 4.2e-20 72.1 0.0 1.5 1 1 0 1 1 1 1 Aminoacyl-tRNA editing domain Peptidase_S51 PF03575.17 gi|119873171|ref|YP_931178.1| - 0.071 12.7 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Peptidase family S51 Archease PF01951.16 gi|119873172|ref|YP_931179.1| - 1.2e-40 138.9 0.4 1.4e-40 138.8 0.4 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) OMPdecase PF00215.24 gi|119873173|ref|YP_931180.1| - 2.5e-18 66.5 0.1 3.9e-18 65.9 0.1 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family AAA_17 PF13207.6 gi|119873174|ref|YP_931181.1| - 2.7e-32 112.0 0.1 3.5e-32 111.7 0.1 1.1 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|119873174|ref|YP_931181.1| - 1.3e-05 24.9 2.8 0.074 12.7 0.3 3.0 1 1 2 3 3 3 2 Thymidylate kinase AAA_18 PF13238.6 gi|119873174|ref|YP_931181.1| - 0.00034 21.1 0.0 0.00055 20.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119873174|ref|YP_931181.1| - 0.0028 17.8 0.1 0.017 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119873174|ref|YP_931181.1| - 0.024 14.9 0.0 0.081 13.2 0.0 1.8 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|119873174|ref|YP_931181.1| - 0.039 13.2 0.0 0.071 12.4 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin RuvB_N PF05496.12 gi|119873174|ref|YP_931181.1| - 0.059 13.1 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain FeoB_N PF02421.18 gi|119873174|ref|YP_931181.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_28 PF13521.6 gi|119873174|ref|YP_931181.1| - 0.093 13.0 0.1 0.23 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|119873174|ref|YP_931181.1| - 0.16 12.3 0.2 1.4 9.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain DJ-1_PfpI PF01965.24 gi|119873175|ref|YP_931182.1| - 1.8e-12 47.4 0.0 3.2e-11 43.3 0.0 2.0 1 1 0 1 1 1 1 DJ-1/PfpI family Fe-ADH_2 PF13685.6 gi|119873176|ref|YP_931183.1| - 8e-57 192.8 1.1 2.5e-56 191.2 1.1 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|119873176|ref|YP_931183.1| - 6.2e-25 87.8 2.4 1e-22 80.5 2.4 2.9 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|119873176|ref|YP_931183.1| - 2e-05 23.9 0.4 0.00068 18.9 0.1 2.5 2 1 0 2 2 2 1 3-dehydroquinate synthase MerC PF03203.14 gi|119873176|ref|YP_931183.1| - 0.011 16.2 0.1 0.019 15.4 0.1 1.4 1 0 0 1 1 1 0 MerC mercury resistance protein DUF5439 PF17507.2 gi|119873177|ref|YP_931184.1| - 0.27 11.5 4.6 0.46 10.7 4.5 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5439) LBP_C PF17386.2 gi|119873177|ref|YP_931184.1| - 0.57 10.1 2.8 4 7.4 0.4 2.2 1 1 1 2 2 2 0 Lacto-N-biose phosphorylase C-terminal domain Malic_M PF03949.15 gi|119873178|ref|YP_931185.1| - 8.9e-24 84.1 0.5 1.6e-22 80.0 0.5 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|119873178|ref|YP_931185.1| - 9.5e-24 84.2 0.2 6.8e-21 74.9 0.2 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain AlaDh_PNT_C PF01262.21 gi|119873178|ref|YP_931185.1| - 0.034 13.5 0.1 0.063 12.6 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Citrate_synt PF00285.21 gi|119873179|ref|YP_931186.1| - 1.1e-127 426.0 0.0 1.3e-127 425.8 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF4443 PF14544.6 gi|119873180|ref|YP_931187.1| - 0.012 15.8 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) HTH_12 PF08461.10 gi|119873180|ref|YP_931187.1| - 0.079 12.9 0.1 0.53 10.3 0.1 2.3 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TIP49 PF06068.13 gi|119873181|ref|YP_931188.1| - 3.5e-133 444.2 0.1 4.5e-133 443.8 0.1 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|119873181|ref|YP_931188.1| - 7.7e-17 61.2 0.1 2.5e-16 59.5 0.1 1.9 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|119873181|ref|YP_931188.1| - 2.4e-11 44.2 1.6 1.4e-07 32.0 0.0 2.9 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|119873181|ref|YP_931188.1| - 3.9e-10 39.7 0.6 2.5e-07 30.6 0.0 2.9 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|119873181|ref|YP_931188.1| - 1.5e-07 32.0 0.2 1.3e-06 29.0 0.2 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119873181|ref|YP_931188.1| - 1.7e-06 28.4 0.0 0.041 14.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|119873181|ref|YP_931188.1| - 7e-05 22.3 0.0 0.00021 20.7 0.0 1.8 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|119873181|ref|YP_931188.1| - 0.00019 21.1 0.0 0.00042 19.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|119873181|ref|YP_931188.1| - 0.0012 18.9 2.2 0.0027 17.7 0.0 2.6 4 0 0 4 4 4 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|119873181|ref|YP_931188.1| - 0.0025 17.2 0.2 0.013 14.9 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|119873181|ref|YP_931188.1| - 0.0029 17.3 0.1 0.028 14.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.6 gi|119873181|ref|YP_931188.1| - 0.0054 16.9 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119873181|ref|YP_931188.1| - 0.0061 16.3 0.1 0.016 14.9 0.1 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|119873181|ref|YP_931188.1| - 0.0081 16.1 0.1 0.032 14.2 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_28 PF13521.6 gi|119873181|ref|YP_931188.1| - 0.0092 16.2 0.1 0.047 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|119873181|ref|YP_931188.1| - 0.011 15.3 0.1 0.03 13.8 0.0 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_17 PF13207.6 gi|119873181|ref|YP_931188.1| - 0.013 15.9 1.5 0.13 12.7 0.0 3.1 4 0 0 4 4 3 0 AAA domain AAA_18 PF13238.6 gi|119873181|ref|YP_931188.1| - 0.019 15.5 0.0 0.043 14.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|119873181|ref|YP_931188.1| - 0.02 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|119873181|ref|YP_931188.1| - 0.032 14.6 0.0 0.072 13.5 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.12 gi|119873181|ref|YP_931188.1| - 0.044 13.1 0.1 0.098 11.9 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.16 gi|119873181|ref|YP_931188.1| - 0.056 12.9 0.1 0.11 12.0 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein ResIII PF04851.15 gi|119873181|ref|YP_931188.1| - 0.088 12.8 0.1 0.53 10.3 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|119873181|ref|YP_931188.1| - 0.088 12.0 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|119873181|ref|YP_931188.1| - 0.093 12.8 0.1 4.7 7.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|119873181|ref|YP_931188.1| - 0.093 13.1 1.6 0.26 11.6 0.7 2.1 2 1 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|119873181|ref|YP_931188.1| - 0.11 12.5 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|119873181|ref|YP_931188.1| - 0.13 12.0 0.1 0.46 10.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|119873181|ref|YP_931188.1| - 0.24 11.1 1.5 0.64 9.7 0.1 2.3 3 0 0 3 3 3 0 AAA domain SLD5_C PF16922.5 gi|119873181|ref|YP_931188.1| - 0.65 10.2 2.7 48 4.3 0.1 3.5 3 1 1 4 4 3 0 DNA replication complex GINS protein SLD5 C-terminus SP_C-Propep PF08999.10 gi|119873182|ref|YP_931189.1| - 0.27 11.0 3.2 0.27 11.0 0.0 2.1 1 1 1 2 2 2 0 Surfactant protein C, N terminal propeptide LptF_LptG PF03739.14 gi|119873182|ref|YP_931189.1| - 6.2 5.6 12.7 0.46 9.3 7.5 1.7 1 1 1 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG Peptidase_M50 PF02163.22 gi|119873183|ref|YP_931190.1| - 3.1e-17 62.7 6.6 1.5e-16 60.5 6.6 2.0 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|119873183|ref|YP_931190.1| - 0.0081 16.5 0.0 0.3 11.4 0.0 2.9 1 1 1 2 2 2 1 PDZ domain PDZ_6 PF17820.1 gi|119873183|ref|YP_931190.1| - 0.037 13.9 1.6 14 5.6 0.0 3.7 4 0 0 4 4 4 0 PDZ domain TcdA_TcdB_pore PF12920.7 gi|119873183|ref|YP_931190.1| - 1 7.5 2.2 1.4 7.0 2.2 1.1 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain zinc_ribbon_4 PF13717.6 gi|119873184|ref|YP_931191.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF2208 PF09973.9 gi|119873185|ref|YP_931192.1| - 1.3e-54 185.3 12.8 1.4e-54 185.2 12.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) UPF0542 PF15086.6 gi|119873185|ref|YP_931192.1| - 0.014 15.3 1.0 0.014 15.3 1.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family UPF0542 S_4TM PF18159.1 gi|119873185|ref|YP_931192.1| - 0.15 11.4 4.4 0.16 11.2 1.1 2.0 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain EMP70 PF02990.16 gi|119873185|ref|YP_931192.1| - 0.39 9.3 5.4 0.59 8.7 5.4 1.2 1 0 0 1 1 1 0 Endomembrane protein 70 SieB PF14163.6 gi|119873185|ref|YP_931192.1| - 0.73 9.3 5.9 0.21 11.1 2.4 1.9 1 1 1 2 2 2 0 Super-infection exclusion protein B MerC PF03203.14 gi|119873185|ref|YP_931192.1| - 0.75 10.3 4.9 13 6.3 1.5 2.1 2 0 0 2 2 2 0 MerC mercury resistance protein DUF1673 PF07895.11 gi|119873185|ref|YP_931192.1| - 1.4 8.6 7.2 2.2 7.9 7.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Ribosomal_60s PF00428.19 gi|119873186|ref|YP_931193.1| - 6.7e-17 61.9 12.6 7.6e-17 61.7 12.6 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|119873186|ref|YP_931193.1| - 0.0018 18.6 0.0 0.003 17.9 0.0 1.3 1 0 0 1 1 1 1 EF-hand domain GP57 PF17594.2 gi|119873186|ref|YP_931193.1| - 0.043 13.6 0.3 0.061 13.1 0.3 1.3 1 0 0 1 1 1 0 Phage Tail fiber assembly helper gene product 57 Ribosomal_L38e PF01781.18 gi|119873187|ref|YP_931194.1| - 5e-05 23.3 0.2 5.5e-05 23.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L38e protein family Sigma70_ner PF04546.13 gi|119873187|ref|YP_931194.1| - 0.021 14.7 0.1 0.022 14.6 0.1 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF4162 PF13732.6 gi|119873187|ref|YP_931194.1| - 0.042 14.6 0.0 0.043 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) Cob_adeno_trans PF01923.18 gi|119873188|ref|YP_931195.1| - 3.6e-19 69.5 0.0 4.1e-19 69.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF2108 PF09881.9 gi|119873188|ref|YP_931195.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.4 1 0 0 1 1 1 0 Predicted membrane protein (DUF2108) PEP_mutase PF13714.6 gi|119873189|ref|YP_931196.1| - 1.6e-59 201.2 0.7 1.9e-59 201.0 0.7 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|119873189|ref|YP_931196.1| - 9.2e-14 50.8 0.8 3.6e-13 48.9 0.2 2.1 1 1 1 2 2 2 1 Isocitrate lyase family Dus PF01207.17 gi|119873189|ref|YP_931196.1| - 0.19 10.8 0.1 0.33 10.0 0.1 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|119873189|ref|YP_931196.1| - 0.27 10.6 2.9 0.54 9.6 2.1 1.7 1 1 1 2 2 2 0 Nitronate monooxygenase MmgE_PrpD PF03972.14 gi|119873190|ref|YP_931197.1| - 8.1e-135 449.7 0.0 9.8e-135 449.5 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Pyr_redox_2 PF07992.14 gi|119873191|ref|YP_931198.1| - 4.6e-29 101.6 0.4 5.7e-29 101.3 0.4 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|119873191|ref|YP_931198.1| - 1.7e-15 57.1 0.4 6.6e-11 42.0 0.0 2.7 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|119873191|ref|YP_931198.1| - 1.4e-09 38.1 2.0 8.3e-06 25.6 0.2 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119873191|ref|YP_931198.1| - 2e-09 37.0 2.7 9.4e-07 28.2 1.4 3.6 1 1 2 4 4 4 1 FAD binding domain Pyr_redox PF00070.27 gi|119873191|ref|YP_931198.1| - 6.2e-07 29.9 0.3 0.013 16.0 0.5 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119873191|ref|YP_931198.1| - 1.9e-06 27.2 4.3 5.4e-05 22.5 0.6 3.0 2 1 1 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|119873191|ref|YP_931198.1| - 7.1e-06 25.4 0.2 1.4e-05 24.5 0.2 1.4 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|119873191|ref|YP_931198.1| - 1.4e-05 24.6 0.1 1.4e-05 24.6 0.1 2.4 3 0 0 3 3 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|119873191|ref|YP_931198.1| - 5e-05 23.5 0.0 9.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|119873191|ref|YP_931198.1| - 0.00084 18.2 0.2 0.0094 14.7 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|119873191|ref|YP_931198.1| - 0.0031 17.5 0.2 0.83 9.6 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|119873191|ref|YP_931198.1| - 0.012 14.6 0.4 0.027 13.5 0.3 1.6 1 1 1 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|119873191|ref|YP_931198.1| - 0.013 14.8 0.1 0.025 13.8 0.1 1.5 1 0 0 1 1 1 0 FAD binding domain K_oxygenase PF13434.6 gi|119873191|ref|YP_931198.1| - 0.19 10.8 0.0 9.7 5.2 0.0 2.6 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Ribosomal_S19 PF00203.21 gi|119873192|ref|YP_931199.1| - 2.2e-32 110.8 0.6 3.3e-32 110.2 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S19 EutB PF06751.11 gi|119873192|ref|YP_931199.1| - 0.1 11.4 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) Myb_DNA-bind_7 PF15963.5 gi|119873192|ref|YP_931199.1| - 0.15 12.0 0.5 0.24 11.3 0.5 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Ribosomal_S17 PF00366.20 gi|119873193|ref|YP_931200.1| - 7.4e-20 70.8 5.9 1.4e-19 69.9 4.0 2.0 2 0 0 2 2 2 1 Ribosomal protein S17 Peptidase_M11 PF05548.11 gi|119873193|ref|YP_931200.1| - 0.039 13.1 0.1 0.053 12.7 0.1 1.1 1 0 0 1 1 1 0 Gametolysin peptidase M11 ERCC4 PF02732.15 gi|119873194|ref|YP_931201.1| - 6.1e-18 65.5 0.0 9.7e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|119873194|ref|YP_931201.1| - 0.0033 18.0 0.0 0.009 16.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|119873194|ref|YP_931201.1| - 0.019 14.8 0.1 0.049 13.5 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF934 PF06073.12 gi|119873194|ref|YP_931201.1| - 0.041 13.8 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF934) IMS_HHH PF11798.8 gi|119873194|ref|YP_931201.1| - 0.1 13.0 0.0 0.33 11.4 0.0 1.9 1 0 0 1 1 1 0 IMS family HHH motif OspE PF02471.17 gi|119873194|ref|YP_931201.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Borrelia outer surface protein E Glyco_hydro_1 PF00232.18 gi|119873195|ref|YP_931202.1| - 4.9e-24 84.6 1.6 6.7e-23 80.8 0.6 2.2 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.15 gi|119873195|ref|YP_931202.1| - 2.7e-05 23.7 0.8 0.0002 20.9 0.0 2.0 2 0 0 2 2 2 1 Beta-galactosidase Cellulase PF00150.18 gi|119873195|ref|YP_931202.1| - 2.8e-05 23.7 0.0 0.00029 20.4 0.0 2.0 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_35 PF01301.19 gi|119873195|ref|YP_931202.1| - 0.0032 17.2 0.3 0.0065 16.1 0.2 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 35 Usp PF00582.26 gi|119873196|ref|YP_931203.1| - 5.7e-13 49.6 0.0 1.2e-12 48.5 0.0 1.5 1 1 0 1 1 1 1 Universal stress protein family TIR PF01582.20 gi|119873196|ref|YP_931203.1| - 8.3e-06 25.7 0.1 9.8e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 TIR domain MGS PF02142.22 gi|119873196|ref|YP_931203.1| - 0.075 13.2 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 MGS-like domain NAD_binding_10 PF13460.6 gi|119873196|ref|YP_931203.1| - 0.09 12.7 0.0 0.12 12.2 0.0 1.3 1 1 0 1 1 1 0 NAD(P)H-binding TIR_2 PF13676.6 gi|119873196|ref|YP_931203.1| - 0.1 13.2 0.0 0.14 12.8 0.0 1.3 1 0 0 1 1 1 0 TIR domain Gp_dh_C PF02800.20 gi|119873197|ref|YP_931204.1| - 9.4e-17 61.0 0.0 1.3e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|119873197|ref|YP_931204.1| - 5e-10 39.6 0.0 1.2e-09 38.3 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|119873197|ref|YP_931204.1| - 0.00012 22.3 0.2 0.00041 20.6 0.2 1.9 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|119873197|ref|YP_931204.1| - 0.00015 21.2 1.6 0.014 14.8 0.7 2.7 2 1 1 3 3 3 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|119873197|ref|YP_931204.1| - 0.00068 20.4 0.2 0.0017 19.2 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|119873197|ref|YP_931204.1| - 0.0007 19.9 0.0 0.0017 18.6 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|119873197|ref|YP_931204.1| - 0.027 14.3 2.0 0.041 13.8 0.6 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|119873197|ref|YP_931204.1| - 0.061 13.5 0.1 1.1 9.4 0.1 2.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|119873197|ref|YP_931204.1| - 0.071 13.4 0.3 1.5 9.1 0.1 2.8 2 1 1 3 3 3 0 TrkA-N domain F420_oxidored PF03807.17 gi|119873197|ref|YP_931204.1| - 0.071 13.7 0.5 0.29 11.7 0.2 2.2 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|119873197|ref|YP_931204.1| - 0.13 11.8 1.1 0.93 9.0 0.1 2.8 3 1 0 3 3 3 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PGK PF00162.19 gi|119873198|ref|YP_931205.1| - 2.5e-92 309.8 0.0 2.8e-92 309.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Transketolase_C PF02780.20 gi|119873198|ref|YP_931205.1| - 0.031 14.2 0.1 0.074 12.9 0.1 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain DUF2204 PF09970.9 gi|119873199|ref|YP_931206.1| - 2.6e-56 190.1 3.9 3.1e-56 189.9 3.9 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) tRNA-Thr_ED PF08915.11 gi|119873200|ref|YP_931207.1| - 1.1e-43 148.6 0.0 2.1e-43 147.7 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|119873200|ref|YP_931207.1| - 6.1e-21 74.4 0.7 1.4e-20 73.3 0.7 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|119873200|ref|YP_931207.1| - 4.4e-20 72.4 0.5 9e-20 71.4 0.2 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) AdoMet_dc PF02675.15 gi|119873201|ref|YP_931208.1| - 6.6e-36 122.8 0.1 7.4e-36 122.6 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|119873201|ref|YP_931208.1| - 0.0052 16.5 0.0 0.0091 15.8 0.0 1.3 1 0 0 1 1 1 1 Stage VI sporulation protein F fragilysinNterm PF16376.5 gi|119873201|ref|YP_931208.1| - 0.095 12.4 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 N-terminal domain of fragilysin MobB PF03205.14 gi|119873203|ref|YP_931210.1| - 4.8e-18 65.3 0.3 9.3e-18 64.4 0.3 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|119873203|ref|YP_931210.1| - 0.00025 21.0 0.0 0.00039 20.4 0.0 1.3 1 0 0 1 1 1 1 NTPase ATPase PF06745.13 gi|119873203|ref|YP_931210.1| - 0.0066 15.8 0.1 0.0078 15.6 0.0 1.4 2 0 0 2 2 2 1 KaiC AAA_35 PF14516.6 gi|119873203|ref|YP_931210.1| - 0.012 14.5 0.2 0.029 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain ATPase_2 PF01637.18 gi|119873203|ref|YP_931210.1| - 0.021 14.7 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|119873203|ref|YP_931210.1| - 0.071 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RNA_helicase PF00910.22 gi|119873203|ref|YP_931210.1| - 0.086 13.2 0.0 0.14 12.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|119873203|ref|YP_931210.1| - 0.091 12.8 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|119873203|ref|YP_931210.1| - 0.11 12.6 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.29 gi|119873203|ref|YP_931210.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|119873203|ref|YP_931210.1| - 0.12 12.2 0.7 0.21 11.5 0.1 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase PadR PF03551.14 gi|119873204|ref|YP_931211.1| - 1.3e-07 31.5 0.1 1.8e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Transgly PF00912.22 gi|119873204|ref|YP_931211.1| - 0.016 14.7 0.1 0.019 14.5 0.1 1.1 1 0 0 1 1 1 0 Transglycosylase Penicillinase_R PF03965.16 gi|119873204|ref|YP_931211.1| - 0.065 13.6 0.0 0.076 13.4 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor Inos-1-P_synth PF01658.17 gi|119873205|ref|YP_931212.1| - 9e-24 83.8 0.0 3.4e-23 82.0 0.0 1.8 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|119873205|ref|YP_931212.1| - 0.11 11.9 0.1 0.7 9.2 0.0 2.1 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase OrfB_Zn_ribbon PF07282.11 gi|119873207|ref|YP_931214.1| - 5e-11 42.4 0.0 1.1e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|119873207|ref|YP_931214.1| - 0.00094 18.8 1.7 0.0022 17.6 1.7 1.6 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit NRDD PF13597.6 gi|119873207|ref|YP_931214.1| - 0.044 12.6 0.0 0.081 11.7 0.0 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prok-RING_1 PF14446.6 gi|119873207|ref|YP_931214.1| - 0.052 13.5 0.3 0.088 12.8 0.3 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|119873207|ref|YP_931214.1| - 0.059 13.4 0.0 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|119873207|ref|YP_931214.1| - 0.08 12.6 6.6 0.048 13.3 3.9 1.9 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|119873207|ref|YP_931214.1| - 0.17 11.9 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.6 gi|119873207|ref|YP_931214.1| - 0.19 12.4 4.3 3.4 8.4 0.4 2.7 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.12 gi|119873207|ref|YP_931214.1| - 0.7 9.9 2.2 30 4.7 0.2 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger CCG PF02754.16 gi|119873208|ref|YP_931215.1| - 3.8e-24 84.7 0.0 5.9e-11 42.4 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|119873208|ref|YP_931215.1| - 7.2e-07 29.6 5.1 2.8e-06 27.7 5.2 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873208|ref|YP_931215.1| - 1.1e-05 25.5 6.4 1.5e-05 25.0 5.0 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119873208|ref|YP_931215.1| - 2.5e-05 24.3 11.9 0.00014 21.9 10.9 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873208|ref|YP_931215.1| - 5.8e-05 23.6 6.1 0.00035 21.1 6.4 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873208|ref|YP_931215.1| - 0.00016 22.6 3.6 0.0006 20.7 3.6 2.1 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|119873208|ref|YP_931215.1| - 0.00062 20.3 7.3 0.00068 20.1 5.2 2.2 2 1 1 3 3 2 1 4Fe-4S dicluster domain CBP_BcsF PF11120.8 gi|119873208|ref|YP_931215.1| - 0.0096 16.0 2.4 0.0096 16.0 2.4 2.2 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsF Fer4_4 PF12800.7 gi|119873208|ref|YP_931215.1| - 0.013 16.0 1.7 0.013 16.0 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119873208|ref|YP_931215.1| - 0.043 13.9 10.9 0.13 12.4 2.2 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain DUF5383 PF17355.2 gi|119873208|ref|YP_931215.1| - 0.1 13.0 0.9 0.24 11.8 0.9 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5383) DUF678 PF05077.12 gi|119873208|ref|YP_931215.1| - 0.39 10.9 2.3 5.6 7.2 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF678) Fer4_18 PF13746.6 gi|119873208|ref|YP_931215.1| - 0.48 10.6 3.0 0.46 10.7 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Cas_Cas4 PF01930.17 gi|119873209|ref|YP_931216.1| - 5.9e-19 68.7 0.4 1.1e-18 67.8 0.4 1.5 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|119873209|ref|YP_931216.1| - 2.1e-08 34.4 3.8 0.0083 16.1 2.1 3.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily PDDEXK_3 PF13366.6 gi|119873209|ref|YP_931216.1| - 3.8e-06 27.3 0.9 1.1e-05 25.8 1.0 1.7 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|119873209|ref|YP_931216.1| - 1.3e-05 25.1 0.2 2.3e-05 24.4 0.2 1.3 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_4 PF14281.6 gi|119873209|ref|YP_931216.1| - 0.008 16.3 0.1 0.01 16.0 0.1 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily NERD PF08378.11 gi|119873209|ref|YP_931216.1| - 0.029 14.8 0.2 0.052 14.0 0.2 1.4 1 0 0 1 1 1 0 Nuclease-related domain GTP_EFTU PF00009.27 gi|119873210|ref|YP_931217.1| - 6.4e-24 84.6 0.0 1.1e-23 83.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|119873210|ref|YP_931217.1| - 2.6e-08 34.1 2.7 5e-08 33.2 0.3 2.8 4 0 0 4 4 4 1 Elongation factor Tu domain 2 PduV-EutP PF10662.9 gi|119873210|ref|YP_931217.1| - 0.0005 19.8 0.2 0.37 10.5 0.0 3.2 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|119873210|ref|YP_931217.1| - 0.0021 18.1 0.0 0.005 16.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D3 PF03143.17 gi|119873210|ref|YP_931217.1| - 0.0081 16.4 0.0 0.019 15.3 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|119873210|ref|YP_931217.1| - 0.028 14.3 0.5 9 6.2 0.0 2.8 4 0 0 4 4 4 0 RsgA GTPase Roc PF08477.13 gi|119873210|ref|YP_931217.1| - 0.11 12.7 0.0 4.7 7.5 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase SKG6 PF08693.10 gi|119873210|ref|YP_931217.1| - 0.15 11.5 0.1 0.15 11.5 0.1 2.2 2 0 0 2 2 2 0 Transmembrane alpha-helix domain H_PPase PF03030.16 gi|119873211|ref|YP_931218.1| - 8.4e-235 781.3 40.3 9.7e-235 781.1 40.3 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase V_ATPase_I PF01496.19 gi|119873212|ref|YP_931219.1| - 1.3e-21 76.3 6.7 6e-16 57.6 0.0 3.4 3 0 0 3 3 3 2 V-type ATPase 116kDa subunit family Arginase PF00491.21 gi|119873212|ref|YP_931219.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Arginase family AAA_19 PF13245.6 gi|119873212|ref|YP_931219.1| - 0.17 12.2 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain YlbD_coat PF14071.6 gi|119873212|ref|YP_931219.1| - 0.17 12.1 0.8 1.5 9.1 0.1 2.5 2 0 0 2 2 2 0 Putative coat protein Nod1 PF17114.5 gi|119873212|ref|YP_931219.1| - 0.97 9.6 5.9 0.49 10.5 1.0 2.8 3 0 0 3 3 3 0 Gef2-related medial cortical node protein Nod1 Laminin_II PF06009.12 gi|119873212|ref|YP_931219.1| - 1 9.4 3.8 37 4.3 0.3 3.1 3 0 0 3 3 3 0 Laminin Domain II MTHFR PF02219.17 gi|119873213|ref|YP_931220.1| - 1.3e-06 28.0 0.0 2.7e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Methylenetetrahydrofolate reductase UPF0086 PF01868.16 gi|119873214|ref|YP_931221.1| - 5.7e-05 22.9 0.0 6e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 ID PF18543.1 gi|119873214|ref|YP_931221.1| - 0.066 13.2 0.1 0.35 10.9 0.1 1.8 2 0 0 2 2 2 0 Intracellular delivery domain Ribosomal_L29 PF00831.23 gi|119873215|ref|YP_931222.1| - 1.4e-15 56.9 4.4 2.1e-15 56.4 4.4 1.2 1 0 0 1 1 1 1 Ribosomal L29 protein DUF2299 PF10061.9 gi|119873215|ref|YP_931222.1| - 0.003 17.3 0.1 0.0031 17.3 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) Rad50_zn_hook PF04423.14 gi|119873215|ref|YP_931222.1| - 0.043 13.7 1.4 0.17 11.7 1.0 2.0 2 0 0 2 2 2 0 Rad50 zinc hook motif Spectrin_like PF18373.1 gi|119873215|ref|YP_931222.1| - 0.051 13.6 0.2 0.1 12.7 0.1 1.6 2 0 0 2 2 2 0 Spectrin like domain Ribosomal_S3_C PF00189.20 gi|119873216|ref|YP_931223.1| - 1.7e-22 79.7 1.7 2.9e-22 79.0 1.7 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|119873216|ref|YP_931223.1| - 1.1e-09 38.0 2.8 1.6e-09 37.4 1.7 1.9 2 0 0 2 2 2 1 KH domain Put_DNA-bind_N PF06971.13 gi|119873216|ref|YP_931223.1| - 0.044 13.8 0.0 1 9.4 0.0 2.5 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus DUF1993 PF09351.10 gi|119873217|ref|YP_931224.1| - 0.093 12.9 0.0 0.11 12.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) OrfB_Zn_ribbon PF07282.11 gi|119873218|ref|YP_931225.1| - 1.2e-08 34.8 0.0 2.3e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|119873218|ref|YP_931225.1| - 0.0017 18.2 0.9 0.0028 17.5 0.9 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.11 gi|119873218|ref|YP_931225.1| - 0.0045 16.6 5.1 0.0045 16.6 5.1 1.7 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain NRDD PF13597.6 gi|119873218|ref|YP_931225.1| - 0.0079 15.0 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase OrfB_IS605 PF01385.19 gi|119873218|ref|YP_931225.1| - 0.013 15.8 1.6 0.024 14.8 1.6 1.4 1 0 0 1 1 1 0 Probable transposase Auto_anti-p27 PF06677.12 gi|119873218|ref|YP_931225.1| - 0.016 15.4 1.4 0.027 14.6 1.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CCDC92 PF14916.6 gi|119873218|ref|YP_931225.1| - 0.022 14.5 0.4 0.057 13.2 0.4 1.7 1 0 0 1 1 1 0 Coiled-coil domain of unknown function DUF35_N PF12172.8 gi|119873218|ref|YP_931225.1| - 0.033 14.1 0.8 3.7 7.5 0.1 2.4 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ribbon_3 PF13248.6 gi|119873218|ref|YP_931225.1| - 0.033 13.6 2.2 0.98 8.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|119873218|ref|YP_931225.1| - 0.038 14.0 0.0 0.088 12.8 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|119873218|ref|YP_931225.1| - 0.041 13.9 0.2 0.068 13.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|119873218|ref|YP_931225.1| - 0.053 13.2 1.9 0.12 12.0 1.9 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.19 gi|119873218|ref|YP_931225.1| - 0.066 13.0 1.0 0.81 9.5 0.1 2.4 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CpXC PF14353.6 gi|119873218|ref|YP_931225.1| - 0.077 13.0 0.6 3.9 7.5 0.6 2.6 1 1 0 1 1 1 0 CpXC protein HscB_4_cys PF18256.1 gi|119873218|ref|YP_931225.1| - 0.099 12.5 2.4 0.22 11.4 2.4 1.6 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Aminotran_5 PF00266.19 gi|119873218|ref|YP_931225.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V CTP-dep_RFKase PF01982.16 gi|119873218|ref|YP_931225.1| - 0.12 12.4 0.4 0.41 10.8 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF120 zf-TFIIB PF13453.6 gi|119873218|ref|YP_931225.1| - 0.14 11.5 1.7 0.38 10.1 1.7 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|119873218|ref|YP_931225.1| - 0.15 12.0 0.6 0.26 11.3 0.6 1.3 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.22 gi|119873218|ref|YP_931225.1| - 0.19 11.7 0.4 0.34 10.8 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.12 gi|119873218|ref|YP_931225.1| - 0.73 9.4 3.4 3.9 7.1 3.5 2.0 1 1 2 3 3 3 0 TFIIB zinc-binding DUF1451 PF07295.11 gi|119873218|ref|YP_931225.1| - 1 9.4 6.1 0.16 12.0 0.9 2.1 2 0 0 2 2 2 0 Zinc-ribbon containing domain Zn-ribbon_8 PF09723.10 gi|119873218|ref|YP_931225.1| - 1.9 8.7 4.9 6.8 6.9 0.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119873218|ref|YP_931225.1| - 2.4 8.0 6.3 2.9 7.7 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L22 PF00237.19 gi|119873219|ref|YP_931226.1| - 1.1e-24 86.6 0.1 1.4e-24 86.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e HTH_33 PF13592.6 gi|119873219|ref|YP_931226.1| - 0.036 13.7 0.1 0.11 12.1 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn helix DUF1823 PF08853.11 gi|119873219|ref|YP_931226.1| - 0.059 13.6 1.0 13 6.0 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1823) UbiA PF01040.18 gi|119873220|ref|YP_931227.1| - 2.3e-28 99.2 23.7 3e-28 98.8 23.7 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family HAD_2 PF13419.6 gi|119873221|ref|YP_931228.1| - 2e-07 31.3 0.0 6.5e-07 29.6 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119873221|ref|YP_931228.1| - 3.5e-07 30.8 0.1 4.8e-07 30.4 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119873221|ref|YP_931228.1| - 8.2e-07 29.5 0.0 2.4e-06 28.0 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.6 gi|119873221|ref|YP_931228.1| - 0.0011 18.7 0.1 0.18 11.6 0.1 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Hydrolase_6 PF13344.6 gi|119873221|ref|YP_931228.1| - 0.031 14.4 0.1 0.15 12.1 0.1 2.3 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|119873221|ref|YP_931228.1| - 0.045 13.5 0.2 1.5 8.5 0.0 2.3 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase TM_helix PF05552.12 gi|119873223|ref|YP_931230.1| - 4.8e-12 45.7 12.1 2.6e-08 33.7 0.7 5.6 6 1 0 6 6 6 2 Conserved TM helix Colicin_V PF02674.16 gi|119873223|ref|YP_931230.1| - 0.013 15.4 0.2 0.013 15.4 0.2 4.2 1 1 1 3 3 3 0 Colicin V production protein Polyoma_agno PF01736.16 gi|119873225|ref|YP_931232.1| - 0.086 12.6 0.2 8.1 6.3 0.0 2.1 1 1 1 2 2 2 0 Polyomavirus agnoprotein RVT_3 PF13456.6 gi|119873226|ref|YP_931233.1| - 2.8e-18 65.9 0.0 3.7e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|119873226|ref|YP_931233.1| - 7.4e-07 29.4 0.0 1.1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 RNase H GyrI-like PF06445.15 gi|119873227|ref|YP_931234.1| - 0.00019 21.8 0.0 0.00024 21.5 0.0 1.2 1 0 0 1 1 1 1 GyrI-like small molecule binding domain NucS PF01939.16 gi|119873228|ref|YP_931235.1| - 4.8e-54 183.1 0.3 6e-54 182.8 0.3 1.0 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|119873228|ref|YP_931235.1| - 9.8e-05 22.5 0.5 0.0015 18.7 0.2 2.4 2 0 0 2 2 2 1 Uncharacterised protein family UPF0102 PDDEXK_10 PF07788.11 gi|119873228|ref|YP_931235.1| - 0.0068 16.3 0.4 0.017 15.1 0.1 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|119873228|ref|YP_931235.1| - 0.0085 16.2 0.0 0.04 14.0 0.0 2.0 2 1 1 3 3 3 1 Domain of unknown function DUF83 XisH PF08814.10 gi|119873228|ref|YP_931235.1| - 0.012 15.8 0.1 0.019 15.1 0.1 1.3 1 0 0 1 1 1 0 XisH protein FAF PF11250.8 gi|119873228|ref|YP_931235.1| - 0.068 13.4 1.0 1.4 9.2 0.0 3.0 2 1 1 3 3 3 0 Fantastic Four meristem regulator ACAS_N PF16177.5 gi|119873229|ref|YP_931236.1| - 0.065 13.2 0.1 0.096 12.6 0.1 1.3 1 0 0 1 1 1 0 Acetyl-coenzyme A synthetase N-terminus Mycoplasma_p37 PF06646.11 gi|119873229|ref|YP_931236.1| - 0.1 11.8 0.1 0.11 11.8 0.1 1.0 1 0 0 1 1 1 0 High affinity transport system protein p37 Aminotran_3 PF00202.21 gi|119873230|ref|YP_931237.1| - 1.4e-117 392.8 0.0 1.8e-117 392.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|119873230|ref|YP_931237.1| - 0.1 11.7 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II ABC_tran PF00005.27 gi|119873231|ref|YP_931238.1| - 3.7e-22 79.3 0.0 5e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873231|ref|YP_931238.1| - 1.6e-11 44.6 0.0 0.00011 22.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|119873231|ref|YP_931238.1| - 1.7e-05 25.0 0.0 2.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119873231|ref|YP_931238.1| - 4.1e-05 23.1 0.0 0.013 15.0 0.2 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873231|ref|YP_931238.1| - 0.00018 21.2 0.2 0.00039 20.1 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|119873231|ref|YP_931238.1| - 0.00092 19.8 0.1 0.0013 19.3 0.1 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119873231|ref|YP_931238.1| - 0.0016 18.4 0.1 0.0027 17.6 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|119873231|ref|YP_931238.1| - 0.0072 16.7 0.0 0.01 16.2 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|119873231|ref|YP_931238.1| - 0.016 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MutS_V PF00488.21 gi|119873231|ref|YP_931238.1| - 0.035 14.1 0.1 8.6 6.3 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_30 PF13604.6 gi|119873231|ref|YP_931238.1| - 0.036 13.8 0.1 0.11 12.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|119873231|ref|YP_931238.1| - 0.037 13.6 0.0 0.092 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|119873231|ref|YP_931238.1| - 0.038 14.4 0.0 0.52 10.7 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|119873231|ref|YP_931238.1| - 0.039 14.4 0.0 0.14 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|119873231|ref|YP_931238.1| - 0.04 14.2 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain LPD22 PF18834.1 gi|119873231|ref|YP_931238.1| - 0.048 13.9 0.0 0.11 12.7 0.0 1.5 2 0 0 2 2 1 0 Large polyvalent protein associated domain 22 AAA_13 PF13166.6 gi|119873231|ref|YP_931238.1| - 0.055 12.1 0.0 3.8 6.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119873231|ref|YP_931238.1| - 0.065 13.2 0.1 0.48 10.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|119873231|ref|YP_931238.1| - 0.079 12.7 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119873231|ref|YP_931238.1| - 0.085 13.4 0.0 0.41 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|119873231|ref|YP_931238.1| - 0.089 12.5 0.0 0.21 11.3 0.1 1.5 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|119873231|ref|YP_931238.1| - 0.11 11.7 0.1 0.22 10.6 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain ATPase_2 PF01637.18 gi|119873231|ref|YP_931238.1| - 0.12 12.3 0.1 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Cytidylate_kin PF02224.18 gi|119873231|ref|YP_931238.1| - 0.12 12.1 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 Cytidylate kinase MMR_HSR1 PF01926.23 gi|119873231|ref|YP_931238.1| - 0.13 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|119873231|ref|YP_931238.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119873231|ref|YP_931238.1| - 0.15 11.7 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|119873231|ref|YP_931238.1| - 0.16 12.0 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|119873231|ref|YP_931238.1| - 0.16 11.9 0.1 0.33 10.9 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|119873231|ref|YP_931238.1| - 0.18 12.0 0.0 0.3 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|119873231|ref|YP_931238.1| - 0.25 10.9 0.1 0.42 10.1 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region UPF0051 PF01458.17 gi|119873232|ref|YP_931239.1| - 1.2e-60 204.9 0.8 5.8e-60 202.7 0.6 1.9 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) RimK PF08443.11 gi|119873234|ref|YP_931241.1| - 1.1e-29 103.3 0.0 1.5e-29 103.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|119873234|ref|YP_931241.1| - 5.3e-12 45.5 0.0 7.9e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|119873234|ref|YP_931241.1| - 1.7e-10 41.2 0.0 3.7e-10 40.1 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|119873234|ref|YP_931241.1| - 0.019 14.2 0.0 5.7 6.1 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp Ins134_P3_kin PF05770.11 gi|119873234|ref|YP_931241.1| - 0.034 13.6 0.0 2.4 7.6 0.0 2.8 3 0 0 3 3 3 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|119873234|ref|YP_931241.1| - 0.036 13.8 0.0 0.063 13.0 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon PAPS_reduct PF01507.19 gi|119873236|ref|YP_931243.1| - 0.049 13.7 0.0 0.069 13.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family RNase_P_p30 PF01876.16 gi|119873236|ref|YP_931243.1| - 0.073 12.5 0.0 0.61 9.5 0.0 2.3 1 1 0 1 1 1 0 RNase P subunit p30 RNA_binding PF01877.17 gi|119873237|ref|YP_931244.1| - 3.3e-21 75.8 0.0 5.5e-21 75.1 0.0 1.3 1 1 0 1 1 1 1 RNA binding TRCF PF03461.15 gi|119873237|ref|YP_931244.1| - 0.075 13.4 0.0 3 8.3 0.0 2.1 2 0 0 2 2 2 0 TRCF domain Ribosomal_L15e PF00827.17 gi|119873238|ref|YP_931245.1| - 9.8e-56 188.5 6.2 1.2e-55 188.3 6.2 1.1 1 0 0 1 1 1 1 Ribosomal L15 Thy1 PF02511.15 gi|119873240|ref|YP_931247.1| - 5e-40 137.3 0.2 5.9e-40 137.1 0.2 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Glycos_transf_2 PF00535.26 gi|119873241|ref|YP_931248.1| - 4.7e-20 72.1 0.0 7.3e-20 71.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|119873241|ref|YP_931248.1| - 1.2e-18 67.7 0.3 1.2e-18 67.7 0.3 2.7 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|119873241|ref|YP_931248.1| - 1.4e-15 57.9 0.0 5.1e-15 56.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|119873241|ref|YP_931248.1| - 1.6e-08 34.2 0.0 3.8e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|119873241|ref|YP_931248.1| - 1.5e-05 24.7 0.0 6.4e-05 22.5 0.0 2.0 3 0 0 3 3 3 1 Glycosyltransferase like family 2 TNFR_16_TM PF18422.1 gi|119873241|ref|YP_931248.1| - 2.6 8.1 16.6 0.62 10.1 0.6 4.5 4 0 0 4 4 4 0 Tumor necrosis factor receptor member 16 trans-membrane domain tRNA-synt_2 PF00152.20 gi|119873242|ref|YP_931249.1| - 5.6e-75 252.3 0.0 7.7e-75 251.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|119873242|ref|YP_931249.1| - 1.9e-09 37.3 0.0 4.8e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|119873242|ref|YP_931249.1| - 1.2e-05 25.0 0.0 0.024 14.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) LEM PF03020.15 gi|119873242|ref|YP_931249.1| - 0.28 10.8 1.6 0.71 9.5 0.0 2.5 2 0 0 2 2 2 0 LEM domain UbiD PF01977.16 gi|119873244|ref|YP_931251.1| - 2.6e-132 441.5 0.0 3.1e-132 441.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VIT1 PF01988.19 gi|119873245|ref|YP_931252.1| - 5.4e-07 29.7 24.3 1.1e-05 25.4 6.3 2.3 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|119873245|ref|YP_931252.1| - 0.0016 18.9 1.8 1.6 9.1 0.1 2.2 2 0 0 2 2 2 2 Rubrerythrin HTH_24 PF13412.6 gi|119873246|ref|YP_931253.1| - 2.2e-07 30.3 0.0 5.4e-07 29.1 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|119873246|ref|YP_931253.1| - 5.1e-07 29.5 0.0 1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119873246|ref|YP_931253.1| - 9.3e-06 25.6 0.0 6.5e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|119873246|ref|YP_931253.1| - 0.0017 18.1 0.0 0.0031 17.3 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain FaeA PF04703.12 gi|119873246|ref|YP_931253.1| - 0.0018 18.6 0.1 0.0031 17.8 0.1 1.4 1 0 0 1 1 1 1 FaeA-like protein HTH_AsnC-type PF13404.6 gi|119873246|ref|YP_931253.1| - 0.0023 17.7 0.2 0.0078 16.0 0.0 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|119873246|ref|YP_931253.1| - 0.0024 17.8 0.0 0.0065 16.4 0.0 1.6 1 1 1 2 2 2 1 HTH domain TrmB PF01978.19 gi|119873246|ref|YP_931253.1| - 0.0094 15.8 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|119873246|ref|YP_931253.1| - 0.014 15.2 0.2 0.06 13.2 0.1 2.0 2 0 0 2 2 2 0 Homeodomain-like domain FtsK_gamma PF09397.10 gi|119873246|ref|YP_931253.1| - 0.026 14.3 0.1 0.038 13.8 0.1 1.3 1 0 0 1 1 1 0 Ftsk gamma domain HTH_41 PF14502.6 gi|119873246|ref|YP_931253.1| - 0.034 13.8 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|119873246|ref|YP_931253.1| - 0.036 14.0 0.0 0.063 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family MarR PF01047.22 gi|119873246|ref|YP_931253.1| - 0.042 13.8 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 MarR family EAP30 PF04157.16 gi|119873246|ref|YP_931253.1| - 0.061 12.6 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Sigma70_r4_2 PF08281.12 gi|119873246|ref|YP_931253.1| - 0.064 12.9 0.1 1.2 8.8 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_DeoR PF08220.12 gi|119873246|ref|YP_931253.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_9 PF08221.11 gi|119873246|ref|YP_931253.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.5 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain VKOR PF07884.14 gi|119873247|ref|YP_931254.1| - 6.2e-12 45.8 10.6 9.7e-12 45.2 10.6 1.4 1 1 0 1 1 1 1 Vitamin K epoxide reductase family PALP PF00291.25 gi|119873248|ref|YP_931255.1| - 4.8e-42 144.4 0.0 7e-42 143.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Chorismate_synt PF01264.21 gi|119873249|ref|YP_931256.1| - 6.2e-117 390.0 0.0 7e-117 389.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Shikimate_dh_N PF08501.11 gi|119873250|ref|YP_931257.1| - 9.2e-28 96.3 0.1 2.3e-27 95.0 0.0 1.7 2 0 0 2 2 2 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|119873250|ref|YP_931257.1| - 4.5e-11 43.0 0.1 1e-10 41.8 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|119873250|ref|YP_931257.1| - 5.6e-09 35.6 0.1 1.1e-08 34.7 0.1 1.5 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain GFO_IDH_MocA PF01408.22 gi|119873250|ref|YP_931257.1| - 0.0085 16.9 0.1 0.025 15.4 0.1 1.9 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.21 gi|119873250|ref|YP_931257.1| - 0.012 14.9 2.4 0.019 14.3 1.3 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|119873250|ref|YP_931257.1| - 0.015 15.7 0.2 0.025 15.0 0.2 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding OrfB_Zn_ribbon PF07282.11 gi|119873252|ref|YP_931259.1| - 1.6e-11 44.0 0.0 2.3e-11 43.4 0.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain FYDLN_acid PF09538.10 gi|119873252|ref|YP_931259.1| - 0.0017 19.0 0.8 0.018 15.7 0.8 2.0 1 1 1 2 2 2 1 Protein of unknown function (FYDLN_acid) zinc_ribbon_2 PF13240.6 gi|119873252|ref|YP_931259.1| - 0.0025 17.5 2.1 0.0088 15.7 2.1 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119873252|ref|YP_931259.1| - 0.0037 16.6 2.2 0.73 9.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|119873252|ref|YP_931259.1| - 0.0084 15.7 3.4 0.019 14.6 3.4 1.6 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|119873252|ref|YP_931259.1| - 0.013 15.5 0.3 0.02 14.9 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|119873252|ref|YP_931259.1| - 0.017 15.2 0.0 0.022 14.8 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37e PF01907.19 gi|119873252|ref|YP_931259.1| - 0.027 14.6 0.3 0.044 14.0 0.3 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e FYVE_2 PF02318.16 gi|119873252|ref|YP_931259.1| - 0.039 14.2 0.0 0.05 13.8 0.0 1.3 1 0 0 1 1 1 0 FYVE-type zinc finger TF_Zn_Ribbon PF08271.12 gi|119873252|ref|YP_931259.1| - 0.044 13.3 3.1 0.98 9.0 0.0 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding CpXC PF14353.6 gi|119873252|ref|YP_931259.1| - 0.045 13.8 0.6 1.7 8.7 0.1 2.2 1 1 1 2 2 2 0 CpXC protein DNA_RNApol_7kD PF03604.13 gi|119873252|ref|YP_931259.1| - 0.055 13.2 3.0 0.098 12.4 3.0 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit NRDD PF13597.6 gi|119873252|ref|YP_931259.1| - 0.057 12.2 0.0 0.07 11.9 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Prim_Zn_Ribbon PF08273.12 gi|119873252|ref|YP_931259.1| - 0.057 13.7 0.6 4.4 7.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Auto_anti-p27 PF06677.12 gi|119873252|ref|YP_931259.1| - 0.096 12.9 1.2 0.16 12.2 1.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C3HC4_3 PF13920.6 gi|119873252|ref|YP_931259.1| - 0.1 12.5 1.3 0.15 11.9 1.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-Mss51 PF13824.6 gi|119873252|ref|YP_931259.1| - 0.11 12.6 0.6 0.22 11.7 0.6 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.6 gi|119873252|ref|YP_931259.1| - 0.12 11.7 2.7 0.32 10.4 2.7 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger UPF0547 PF10571.9 gi|119873252|ref|YP_931259.1| - 0.12 12.4 1.1 11 6.2 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_5 PF14634.6 gi|119873252|ref|YP_931259.1| - 0.15 12.0 1.9 0.23 11.4 1.9 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Zn-ribbon_8 PF09723.10 gi|119873252|ref|YP_931259.1| - 0.17 12.1 2.9 1.3 9.2 2.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|119873252|ref|YP_931259.1| - 0.18 12.2 2.9 0.78 10.2 0.2 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-nanos PF05741.13 gi|119873252|ref|YP_931259.1| - 0.26 11.6 1.9 15 5.9 0.2 2.2 1 1 1 2 2 2 0 Nanos RNA binding domain zf_UBZ PF18439.1 gi|119873252|ref|YP_931259.1| - 0.27 10.9 1.8 1.5 8.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-RRN7 PF11781.8 gi|119873252|ref|YP_931259.1| - 0.57 9.9 2.6 19 5.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-HYPF PF07503.12 gi|119873252|ref|YP_931259.1| - 0.87 9.4 5.2 3 7.7 5.2 1.9 1 1 0 1 1 1 0 HypF finger Zn_Tnp_IS1595 PF12760.7 gi|119873252|ref|YP_931259.1| - 1.5 8.9 4.3 8.3 6.5 4.4 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain DUF3797 PF12677.7 gi|119873252|ref|YP_931259.1| - 5.1 7.1 6.8 4.7 7.2 0.5 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) P5CR_dimer PF14748.6 gi|119873253|ref|YP_931260.1| - 7.5e-19 67.9 0.0 2.2e-18 66.4 0.0 1.7 2 0 0 2 2 2 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|119873253|ref|YP_931260.1| - 0.042 14.4 0.1 0.23 12.1 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NUDIX PF00293.28 gi|119873254|ref|YP_931261.1| - 3.1e-24 85.5 0.2 3.4e-24 85.4 0.2 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|119873254|ref|YP_931261.1| - 7.3e-05 22.7 0.0 0.00011 22.1 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|119873254|ref|YP_931261.1| - 0.0013 18.3 0.1 0.013 15.0 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) dCache_3 PF14827.6 gi|119873254|ref|YP_931261.1| - 0.0032 17.2 0.0 0.0049 16.5 0.0 1.2 1 0 0 1 1 1 1 Double sensory domain of two-component sensor kinase PhoH PF02562.16 gi|119873255|ref|YP_931262.1| - 3.7e-50 170.2 0.0 4.9e-50 169.8 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|119873255|ref|YP_931262.1| - 1.9e-10 40.4 2.0 2.8e-08 33.5 0.9 2.7 1 1 1 2 2 2 2 KH domain KH_1 PF00013.29 gi|119873255|ref|YP_931262.1| - 2.4e-07 30.5 0.2 1e-05 25.3 0.1 2.4 2 0 0 2 2 2 1 KH domain KH_5 PF13184.6 gi|119873255|ref|YP_931262.1| - 3.9e-06 26.9 1.2 0.0022 18.0 0.1 2.9 3 0 0 3 3 3 2 NusA-like KH domain IstB_IS21 PF01695.17 gi|119873255|ref|YP_931262.1| - 9.4e-05 22.2 0.0 0.00019 21.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119873255|ref|YP_931262.1| - 0.0008 19.7 0.0 0.0021 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|119873255|ref|YP_931262.1| - 0.0016 18.2 0.0 0.0042 16.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain KH_4 PF13083.6 gi|119873255|ref|YP_931262.1| - 0.041 13.7 0.2 2.3 8.2 0.2 2.7 2 0 0 2 2 2 0 KH domain ABC_tran PF00005.27 gi|119873255|ref|YP_931262.1| - 0.066 13.7 0.0 0.2 12.2 0.0 1.8 2 0 0 2 2 2 0 ABC transporter ADH_N PF08240.12 gi|119873256|ref|YP_931263.1| - 2.2e-29 101.6 0.6 4.2e-29 100.6 0.2 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119873256|ref|YP_931263.1| - 2.6e-21 75.9 0.1 4e-21 75.4 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|119873256|ref|YP_931263.1| - 7.3e-07 30.3 0.0 1.3e-06 29.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase CMAS PF02353.20 gi|119873256|ref|YP_931263.1| - 0.012 15.0 0.1 0.016 14.5 0.1 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RmlD_sub_bind PF04321.17 gi|119873256|ref|YP_931263.1| - 0.09 11.9 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain adh_short PF00106.25 gi|119873256|ref|YP_931263.1| - 0.094 12.2 1.7 0.14 11.6 1.7 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Epimerase PF01370.21 gi|119873256|ref|YP_931263.1| - 0.099 12.1 0.4 0.14 11.6 0.4 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|119873256|ref|YP_931263.1| - 0.26 10.7 1.0 0.43 9.9 1.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|119873256|ref|YP_931263.1| - 0.36 10.1 5.0 0.71 9.1 5.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|119873257|ref|YP_931264.1| - 2.1e-54 184.5 0.0 2.5e-54 184.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|119873257|ref|YP_931264.1| - 8.1e-45 153.7 0.0 1.2e-44 153.1 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|119873257|ref|YP_931264.1| - 1.2e-16 60.6 0.0 1.6e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|119873257|ref|YP_931264.1| - 1.7e-16 60.2 0.0 2.1e-16 59.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|119873257|ref|YP_931264.1| - 2.6e-14 53.0 0.0 1.9e-13 50.2 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|119873257|ref|YP_931264.1| - 3.3e-11 42.8 0.2 3.4e-06 26.4 0.0 2.6 1 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|119873257|ref|YP_931264.1| - 4.2e-07 30.0 0.0 7.5e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|119873257|ref|YP_931264.1| - 1.2e-06 28.2 0.1 0.00027 20.5 0.0 2.5 3 0 0 3 3 3 1 short chain dehydrogenase KR PF08659.10 gi|119873257|ref|YP_931264.1| - 0.001 19.0 0.0 0.0025 17.7 0.0 1.6 1 0 0 1 1 1 1 KR domain NmrA PF05368.13 gi|119873257|ref|YP_931264.1| - 0.062 12.9 0.0 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 NmrA-like family NAD_binding_2 PF03446.15 gi|119873257|ref|YP_931264.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|119873257|ref|YP_931264.1| - 0.16 12.3 0.0 0.36 11.1 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain F420_oxidored PF03807.17 gi|119873257|ref|YP_931264.1| - 0.16 12.6 0.0 0.35 11.5 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent adh_short_C2 PF13561.6 gi|119873257|ref|YP_931264.1| - 0.17 11.4 0.2 5.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase EPSP_synthase PF00275.20 gi|119873258|ref|YP_931265.1| - 1.1e-61 208.8 0.0 1.5e-61 208.4 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHQ_synthase PF01761.20 gi|119873259|ref|YP_931266.1| - 7.7e-88 294.0 0.0 9.2e-88 293.8 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|119873259|ref|YP_931266.1| - 1.5e-05 24.9 1.4 4.7e-05 23.2 0.0 2.1 2 1 0 2 2 2 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|119873259|ref|YP_931266.1| - 0.0015 17.4 2.8 0.02 13.7 0.3 2.3 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase Transket_pyr PF02779.24 gi|119873260|ref|YP_931267.1| - 6.7e-34 117.1 0.3 1.8e-33 115.7 0.1 1.7 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|119873260|ref|YP_931267.1| - 1.1e-28 99.6 0.1 1.8e-28 98.9 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|119873260|ref|YP_931267.1| - 0.0021 18.3 0.0 0.004 17.4 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II HCV_NS4a PF01006.20 gi|119873260|ref|YP_931267.1| - 0.86 9.4 3.0 14 5.5 1.5 2.6 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a Transketolase_N PF00456.21 gi|119873261|ref|YP_931268.1| - 1.1e-39 136.3 0.1 3.3e-39 134.8 0.1 1.6 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|119873261|ref|YP_931268.1| - 4.4e-13 49.1 0.1 7.7e-09 35.2 0.1 2.7 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|119873261|ref|YP_931268.1| - 1.3e-07 31.5 1.4 6.3e-06 26.0 0.1 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|119873261|ref|YP_931268.1| - 5.8e-05 22.2 0.0 6.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.10 gi|119873261|ref|YP_931268.1| - 0.0019 17.1 0.3 0.0043 15.9 0.1 1.6 1 1 1 2 2 2 1 XFP N-terminal domain tRNA-synt_1b PF00579.25 gi|119873262|ref|YP_931269.1| - 8.2e-42 143.5 0.0 8.3e-40 136.9 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) DAHP_synth_1 PF00793.20 gi|119873263|ref|YP_931270.1| - 3e-70 236.2 0.0 4e-70 235.8 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|119873263|ref|YP_931270.1| - 2.7e-07 30.3 0.0 9.8e-07 28.5 0.0 1.7 1 1 0 1 1 1 1 NeuB family NdhM PF10664.9 gi|119873263|ref|YP_931270.1| - 0.2 11.9 0.0 0.42 10.9 0.0 1.4 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M NTP_transf_3 PF12804.7 gi|119873264|ref|YP_931271.1| - 1.4e-30 106.8 0.2 1.7e-30 106.5 0.2 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Ald_Xan_dh_C2 PF02738.18 gi|119873265|ref|YP_931272.1| - 2.4e-164 547.8 0.3 2.4e-164 547.8 0.3 1.3 2 0 0 2 2 2 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|119873265|ref|YP_931272.1| - 8.2e-22 77.6 0.8 9.2e-20 71.1 0.8 2.8 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ATPase_2 PF01637.18 gi|119873266|ref|YP_931273.1| - 0.0093 15.9 0.0 0.0093 15.9 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|119873266|ref|YP_931273.1| - 0.015 15.8 0.0 0.017 15.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119873266|ref|YP_931273.1| - 0.021 15.2 0.1 0.025 15.0 0.1 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|119873266|ref|YP_931273.1| - 0.078 12.1 0.0 0.078 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|119873266|ref|YP_931273.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|119873266|ref|YP_931273.1| - 0.18 11.8 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|119873266|ref|YP_931273.1| - 0.19 11.7 0.2 0.31 11.0 0.1 1.3 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Fer2_2 PF01799.20 gi|119873268|ref|YP_931275.1| - 5e-22 77.7 0.7 5e-22 77.7 0.7 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|119873268|ref|YP_931275.1| - 1.7e-05 24.7 0.4 1.7e-05 24.7 0.4 2.2 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|119873268|ref|YP_931275.1| - 0.00031 20.7 1.3 0.00031 20.7 1.3 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain GCV_T PF01571.21 gi|119873268|ref|YP_931275.1| - 0.037 13.4 0.0 0.042 13.2 0.0 1.1 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain SHS2_Rpb7-N PF03876.17 gi|119873268|ref|YP_931275.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.6 1 1 0 1 1 1 0 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 FAD_binding_5 PF00941.21 gi|119873269|ref|YP_931276.1| - 6.3e-41 140.0 0.0 1e-40 139.2 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|119873269|ref|YP_931276.1| - 4e-24 84.7 1.1 6.7e-24 84.0 1.1 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain PDH PF02153.17 gi|119873270|ref|YP_931277.1| - 3.6e-15 55.7 0.0 5.4e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|119873270|ref|YP_931277.1| - 1.6e-06 28.6 0.6 5.6e-05 23.7 0.6 2.4 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|119873270|ref|YP_931277.1| - 0.0045 17.2 0.0 0.018 15.2 0.0 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|119873270|ref|YP_931277.1| - 0.013 15.1 0.0 1.1 8.8 0.0 2.2 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|119873270|ref|YP_931277.1| - 0.023 14.1 0.0 0.048 13.0 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|119873270|ref|YP_931277.1| - 0.038 14.0 0.2 0.82 9.6 0.0 2.7 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ATPase PF06745.13 gi|119873272|ref|YP_931279.1| - 0.00021 20.7 0.3 0.36 10.1 0.0 2.4 2 1 0 2 2 2 2 KaiC AAA_16 PF13191.6 gi|119873272|ref|YP_931279.1| - 0.00047 20.6 0.1 0.00094 19.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119873272|ref|YP_931279.1| - 0.00059 20.1 0.0 0.00087 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|119873272|ref|YP_931279.1| - 0.0047 16.4 0.0 0.0069 15.9 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_30 PF13604.6 gi|119873272|ref|YP_931279.1| - 0.0073 16.0 0.1 0.017 14.9 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|119873272|ref|YP_931279.1| - 0.0078 16.6 0.0 0.012 16.1 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|119873272|ref|YP_931279.1| - 0.0085 16.0 0.1 0.026 14.5 0.0 1.8 2 0 0 2 2 2 1 NTPase AAA_25 PF13481.6 gi|119873272|ref|YP_931279.1| - 0.0087 15.6 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|119873272|ref|YP_931279.1| - 0.026 14.2 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DnaB_C PF03796.15 gi|119873272|ref|YP_931279.1| - 0.033 13.5 0.0 0.048 13.0 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain MobB PF03205.14 gi|119873272|ref|YP_931279.1| - 0.057 13.3 0.1 0.11 12.3 0.0 1.5 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|119873272|ref|YP_931279.1| - 0.058 13.4 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KdpD PF02702.17 gi|119873272|ref|YP_931279.1| - 0.11 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ATPase_2 PF01637.18 gi|119873272|ref|YP_931279.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ResIII PF04851.15 gi|119873272|ref|YP_931279.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit cobW PF02492.19 gi|119873272|ref|YP_931279.1| - 0.14 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|119873272|ref|YP_931279.1| - 0.15 12.4 0.2 0.33 11.3 0.1 1.6 2 0 0 2 2 1 0 AAA domain PhoH PF02562.16 gi|119873272|ref|YP_931279.1| - 0.16 11.4 0.1 0.22 10.9 0.1 1.3 1 0 0 1 1 1 0 PhoH-like protein Mg_chelatase PF01078.21 gi|119873272|ref|YP_931279.1| - 0.16 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|119873272|ref|YP_931279.1| - 0.21 11.8 0.1 0.29 11.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|119873273|ref|YP_931280.1| - 6.8e-09 35.4 0.0 8.2e-08 31.9 0.0 1.9 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119873273|ref|YP_931280.1| - 3.4e-07 30.0 0.9 4.3e-06 26.4 0.9 2.0 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119873273|ref|YP_931280.1| - 4.3e-07 30.3 0.0 5.3e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|119873273|ref|YP_931280.1| - 0.00094 19.0 0.2 0.002 17.9 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119873273|ref|YP_931280.1| - 0.003 18.1 0.0 0.0041 17.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119873273|ref|YP_931280.1| - 0.0032 17.2 0.3 0.016 14.9 0.1 2.3 2 1 0 2 2 2 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873273|ref|YP_931280.1| - 0.0042 17.5 0.0 0.0074 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119873273|ref|YP_931280.1| - 0.02 15.3 0.1 0.026 14.9 0.1 1.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|119873273|ref|YP_931280.1| - 0.025 14.6 0.0 0.036 14.1 0.0 1.3 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119873273|ref|YP_931280.1| - 0.033 14.7 0.1 0.2 12.2 0.1 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|119873273|ref|YP_931280.1| - 0.044 13.0 0.0 0.051 12.8 0.0 1.1 1 0 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|119873273|ref|YP_931280.1| - 0.052 13.4 0.0 0.075 12.9 0.0 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|119873273|ref|YP_931280.1| - 0.076 12.8 0.0 0.076 12.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|119873273|ref|YP_931280.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RuvB_N PF05496.12 gi|119873273|ref|YP_931280.1| - 0.095 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|119873273|ref|YP_931280.1| - 0.11 12.7 0.1 0.14 12.3 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|119873273|ref|YP_931280.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|119873273|ref|YP_931280.1| - 0.22 12.1 0.0 0.47 11.0 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_13 PF13166.6 gi|119873273|ref|YP_931280.1| - 0.41 9.2 0.3 0.5 8.9 0.3 1.1 1 0 0 1 1 1 0 AAA domain DHquinase_I PF01487.15 gi|119873274|ref|YP_931281.1| - 4.5e-46 157.9 0.0 6.3e-46 157.5 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.21 gi|119873274|ref|YP_931281.1| - 5.2e-14 52.3 0.7 9.7e-14 51.5 0.2 1.7 2 0 0 2 2 2 1 Chorismate mutase type II GP88 PF17338.2 gi|119873275|ref|YP_931282.1| - 6.5e-14 51.9 0.2 1.1e-13 51.3 0.2 1.3 1 0 0 1 1 1 1 Gene product 88 zf-C2H2_11 PF16622.5 gi|119873275|ref|YP_931282.1| - 0.085 12.6 1.2 0.17 11.6 1.2 1.5 1 0 0 1 1 1 0 zinc-finger C2H2-type Aminotran_1_2 PF00155.21 gi|119873276|ref|YP_931283.1| - 2.4e-37 128.9 0.0 4.6e-37 128.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|119873276|ref|YP_931283.1| - 0.018 13.8 0.0 0.22 10.3 0.0 2.4 1 1 0 1 1 1 0 Alanine-glyoxylate amino-transferase GHMP_kinases_N PF00288.26 gi|119873277|ref|YP_931284.1| - 7.7e-09 35.7 1.9 1.8e-08 34.5 1.9 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|119873277|ref|YP_931284.1| - 0.067 13.6 0.1 0.38 11.1 0.0 2.2 2 0 0 2 2 2 0 GHMP kinases C terminal Glyco_hydro_31 PF01055.26 gi|119873279|ref|YP_931286.1| - 1.4e-129 433.2 0.0 1.6e-129 433.0 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|119873279|ref|YP_931286.1| - 4.3e-13 49.4 0.1 1.3e-12 47.8 0.1 1.9 1 0 0 1 1 1 1 Galactose mutarotase-like GHL10 PF02638.15 gi|119873279|ref|YP_931286.1| - 0.018 14.1 0.1 5.4 6.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase-like 10 GHL6 PF14871.6 gi|119873279|ref|YP_931286.1| - 0.041 14.0 0.1 18 5.5 0.0 2.8 3 1 0 3 3 3 0 Hypothetical glycosyl hydrolase 6 DUF2175 PF09943.9 gi|119873280|ref|YP_931287.1| - 2.3e-33 114.4 0.6 2.5e-33 114.2 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Ribosomal_L3 PF00297.22 gi|119873281|ref|YP_931288.1| - 8.2e-77 258.7 0.1 2.1e-76 257.3 0.1 1.5 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|119873282|ref|YP_931289.1| - 1.6e-40 138.8 0.0 2.1e-40 138.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|119873283|ref|YP_931290.1| - 7.2e-14 51.9 8.8 6.6e-13 48.8 8.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 adh_short PF00106.25 gi|119873283|ref|YP_931290.1| - 0.048 13.1 0.3 0.057 12.9 0.3 1.0 1 0 0 1 1 1 0 short chain dehydrogenase SNO PF01174.19 gi|119873283|ref|YP_931290.1| - 0.085 12.7 0.0 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 SNO glutamine amidotransferase family Ribosomal_L9_C PF03948.14 gi|119873283|ref|YP_931290.1| - 0.12 12.8 0.4 0.12 12.8 0.4 1.8 2 0 0 2 2 2 0 Ribosomal protein L9, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|119873285|ref|YP_931292.1| - 0.011 15.7 0.1 0.023 14.6 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.12 gi|119873285|ref|YP_931292.1| - 0.053 13.7 2.2 0.1 12.8 2.2 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.12 gi|119873285|ref|YP_931292.1| - 0.06 13.3 0.3 0.12 12.4 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons ProRS-C_2 PF09181.10 gi|119873285|ref|YP_931292.1| - 0.088 13.0 0.6 0.4 10.9 0.6 2.0 1 1 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal zf-NADH-PPase PF09297.11 gi|119873285|ref|YP_931292.1| - 0.25 11.0 3.1 1.2 8.9 3.1 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|119873285|ref|YP_931292.1| - 0.76 9.9 3.7 21 5.4 4.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|119873285|ref|YP_931292.1| - 1 9.5 5.1 13 6.0 4.1 2.8 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|119873285|ref|YP_931292.1| - 2.4 8.3 0.0 2.4 8.3 0.0 2.6 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain DUF2067 PF09840.9 gi|119873286|ref|YP_931293.1| - 1.2e-45 155.4 1.4 1.4e-45 155.2 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) HAUS-augmin3 PF14932.6 gi|119873286|ref|YP_931293.1| - 0.0013 18.4 0.0 0.045 13.3 0.0 2.0 2 0 0 2 2 2 2 HAUS augmin-like complex subunit 3 PASTA PF03793.19 gi|119873286|ref|YP_931293.1| - 0.15 11.9 1.3 5 7.0 0.0 2.8 3 0 0 3 3 3 0 PASTA domain RNA_pol_L_2 PF13656.6 gi|119873287|ref|YP_931294.1| - 7.7e-16 57.6 0.0 8.8e-16 57.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Baculo_gp41 PF04700.12 gi|119873287|ref|YP_931294.1| - 0.07 12.9 0.0 0.078 12.7 0.0 1.1 1 0 0 1 1 1 0 Structural glycoprotein p40/gp41 conserved region EMG1 PF03587.14 gi|119873288|ref|YP_931295.1| - 6.7e-44 149.9 0.0 7.6e-44 149.7 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Peptidase_S8 PF00082.22 gi|119873290|ref|YP_931297.1| - 8e-55 186.2 3.9 1e-54 185.8 3.9 1.1 1 0 0 1 1 1 1 Subtilase family Aconitase PF00330.20 gi|119873291|ref|YP_931298.1| - 1.5e-78 264.9 1.0 3.3e-76 257.2 1.0 2.6 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|119873291|ref|YP_931298.1| - 0.0047 15.7 0.0 0.007 15.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Dimerisation PF08100.11 gi|119873291|ref|YP_931298.1| - 0.18 11.8 0.0 0.55 10.3 0.0 1.8 2 0 0 2 2 2 0 Dimerisation domain OTCace PF00185.24 gi|119873292|ref|YP_931299.1| - 3.3e-56 189.7 0.0 1.8e-54 184.1 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|119873292|ref|YP_931299.1| - 9.4e-42 142.5 0.1 1.8e-41 141.6 0.1 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RisS_PPD PF16524.5 gi|119873292|ref|YP_931299.1| - 0.02 15.1 0.1 0.086 13.1 0.0 2.0 2 0 0 2 2 2 0 Periplasmic domain of Sensor histidine kinase RisS HMGL-like PF00682.19 gi|119873293|ref|YP_931300.1| - 1.8e-73 247.4 1.5 1.8e-73 247.4 1.5 2.1 2 1 0 2 2 2 1 HMGL-like AsnC_trans_reg PF01037.21 gi|119873293|ref|YP_931300.1| - 6.7e-17 61.2 1.0 3.4e-16 59.0 1.0 2.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain ACT_4 PF13291.6 gi|119873293|ref|YP_931300.1| - 0.0072 16.9 2.7 0.0072 16.9 2.7 2.6 2 1 1 3 3 3 1 ACT domain NapD PF03927.13 gi|119873293|ref|YP_931300.1| - 0.008 16.2 2.9 0.008 16.2 2.9 3.0 3 0 0 3 3 3 1 NapD protein CinA_KH PF18146.1 gi|119873293|ref|YP_931300.1| - 0.018 15.2 2.5 0.98 9.6 0.0 3.5 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain AP_endonuc_2 PF01261.24 gi|119873293|ref|YP_931300.1| - 0.056 12.9 0.8 2.1 7.7 0.0 3.0 2 1 1 3 3 3 0 Xylose isomerase-like TIM barrel TRAPP PF04051.16 gi|119873293|ref|YP_931300.1| - 0.095 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Transport protein particle (TRAPP) component DUF3235 PF11574.8 gi|119873293|ref|YP_931300.1| - 0.14 13.1 0.5 12 6.9 0.0 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF3235) DUF1205 PF06722.12 gi|119873293|ref|YP_931300.1| - 0.2 11.8 3.1 4.8 7.4 0.6 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1205) AlkA_N PF06029.11 gi|119873293|ref|YP_931300.1| - 0.34 11.2 1.4 12 6.3 0.2 2.6 2 0 0 2 2 2 0 AlkA N-terminal domain PAPS_reduct PF01507.19 gi|119873294|ref|YP_931301.1| - 1.9e-44 151.8 0.0 3.8e-44 150.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|119873294|ref|YP_931301.1| - 4.1e-06 26.8 6.6 4.1e-06 26.8 6.6 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873294|ref|YP_931301.1| - 5.3e-05 23.7 10.3 0.00014 22.4 10.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119873294|ref|YP_931301.1| - 0.00071 19.6 13.6 0.006 16.7 2.7 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873294|ref|YP_931301.1| - 0.00084 20.2 1.3 0.00084 20.2 1.3 3.0 2 1 2 4 4 4 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119873294|ref|YP_931301.1| - 0.0013 18.7 1.6 0.0013 18.7 1.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119873294|ref|YP_931301.1| - 0.0025 17.6 1.8 0.0025 17.6 1.8 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873294|ref|YP_931301.1| - 0.012 15.6 14.0 0.078 13.1 1.5 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119873294|ref|YP_931301.1| - 0.013 15.6 9.9 0.013 15.6 9.9 1.7 2 0 0 2 2 1 0 4Fe-4S dicluster domain QueC PF06508.13 gi|119873294|ref|YP_931301.1| - 0.022 14.2 0.0 3.2 7.2 0.0 3.3 4 0 0 4 4 4 0 Queuosine biosynthesis protein QueC Fer4_18 PF13746.6 gi|119873294|ref|YP_931301.1| - 0.69 10.1 8.8 40 4.4 9.1 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119873294|ref|YP_931301.1| - 0.86 10.1 11.8 1.5 9.3 3.6 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glu_synthase PF01645.17 gi|119873296|ref|YP_931303.1| - 1.8e-95 320.2 7.9 2.7e-90 303.2 3.3 3.2 2 1 1 3 3 3 3 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|119873296|ref|YP_931303.1| - 6e-13 48.9 0.2 6e-05 22.7 0.0 3.3 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|119873296|ref|YP_931303.1| - 1.5e-05 24.2 5.8 0.41 9.6 0.0 3.5 3 0 0 3 3 3 3 FMN-dependent dehydrogenase GXGXG PF01493.19 gi|119873297|ref|YP_931304.1| - 5.1e-22 78.4 18.4 1.2e-21 77.2 18.4 1.6 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|119873297|ref|YP_931304.1| - 9.4e-09 35.6 0.0 2.3e-08 34.3 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3038 PF11237.8 gi|119873297|ref|YP_931304.1| - 0.074 13.1 0.1 0.42 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3038) Aconitase_C PF00694.19 gi|119873298|ref|YP_931305.1| - 3.2e-17 63.1 0.0 3.9e-17 62.8 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain HMGL-like PF00682.19 gi|119873299|ref|YP_931306.1| - 2.5e-92 309.2 3.6 3.4e-92 308.7 3.6 1.2 1 0 0 1 1 1 1 HMGL-like Pro_dh PF01619.18 gi|119873299|ref|YP_931306.1| - 0.015 14.9 0.1 0.027 14.0 0.1 1.5 1 0 0 1 1 1 0 Proline dehydrogenase TPP_enzyme_C PF02775.21 gi|119873299|ref|YP_931306.1| - 0.028 14.2 0.6 1.5 8.6 0.1 2.5 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SpoU_sub_bind PF08032.12 gi|119873299|ref|YP_931306.1| - 0.4 11.0 1.8 45 4.4 0.0 3.2 3 1 0 3 3 3 0 RNA 2'-O ribose methyltransferase substrate binding IMPDH PF00478.25 gi|119873299|ref|YP_931306.1| - 1.3 8.0 4.4 0.2 10.6 0.8 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Iso_dh PF00180.20 gi|119873300|ref|YP_931307.1| - 2e-88 296.9 0.7 2.4e-88 296.6 0.7 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|119873300|ref|YP_931307.1| - 0.059 12.8 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA ELFV_dehydrog PF00208.21 gi|119873301|ref|YP_931308.1| - 2.9e-70 236.8 0.2 3.8e-70 236.4 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|119873301|ref|YP_931308.1| - 1.6e-49 167.1 0.0 2.6e-49 166.4 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|119873301|ref|YP_931308.1| - 4.5e-05 22.9 0.5 8.9e-05 21.9 0.5 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|119873301|ref|YP_931308.1| - 0.0028 17.7 0.0 0.0056 16.8 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|119873301|ref|YP_931308.1| - 0.034 13.8 0.0 0.053 13.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF3420 PF11900.8 gi|119873302|ref|YP_931309.1| - 0.041 14.0 0.3 0.35 11.1 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) BPD_transp_1 PF00528.22 gi|119873304|ref|YP_931311.1| - 6.6e-16 58.6 11.5 6.6e-16 58.6 11.5 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Deltameth_res PF16020.5 gi|119873304|ref|YP_931311.1| - 0.074 12.9 0.6 0.074 12.9 0.6 2.1 2 0 0 2 2 2 0 Deltamethrin resistance Bacteriocin_IIc PF10439.9 gi|119873304|ref|YP_931311.1| - 0.099 12.8 1.2 0.21 11.7 1.0 1.8 1 1 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide ABC_tran PF00005.27 gi|119873305|ref|YP_931312.1| - 3.9e-39 134.3 0.0 5.1e-39 133.9 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873305|ref|YP_931312.1| - 2.9e-12 47.0 0.1 1.2e-07 31.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873305|ref|YP_931312.1| - 1.2e-08 34.7 0.0 0.00027 20.5 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873305|ref|YP_931312.1| - 3.6e-05 23.4 0.0 7.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873305|ref|YP_931312.1| - 0.00023 21.6 0.1 0.00073 19.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|119873305|ref|YP_931312.1| - 0.00029 21.1 0.3 0.0039 17.4 0.3 2.2 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|119873305|ref|YP_931312.1| - 0.00045 19.7 0.4 0.0014 18.1 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_25 PF13481.6 gi|119873305|ref|YP_931312.1| - 0.00046 19.8 0.8 0.0022 17.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119873305|ref|YP_931312.1| - 0.00078 19.6 0.0 0.0019 18.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|119873305|ref|YP_931312.1| - 0.00084 18.5 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 gi|119873305|ref|YP_931312.1| - 0.00085 19.8 0.0 0.17 12.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|119873305|ref|YP_931312.1| - 0.0019 18.1 0.3 0.023 14.6 0.1 2.1 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|119873305|ref|YP_931312.1| - 0.0024 17.6 0.0 0.005 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119873305|ref|YP_931312.1| - 0.0053 16.7 0.0 0.0099 15.8 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase IstB_IS21 PF01695.17 gi|119873305|ref|YP_931312.1| - 0.0063 16.3 0.1 0.9 9.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_28 PF13521.6 gi|119873305|ref|YP_931312.1| - 0.0065 16.7 0.0 0.029 14.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|119873305|ref|YP_931312.1| - 0.0079 15.9 0.0 0.38 10.4 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|119873305|ref|YP_931312.1| - 0.008 16.2 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|119873305|ref|YP_931312.1| - 0.0084 16.0 0.0 0.018 15.0 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_23 PF13476.6 gi|119873305|ref|YP_931312.1| - 0.01 16.4 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|119873305|ref|YP_931312.1| - 0.012 15.7 0.0 0.029 14.5 0.0 1.6 2 0 0 2 2 1 0 Helicase HerA, central domain SbcCD_C PF13558.6 gi|119873305|ref|YP_931312.1| - 0.016 15.4 0.1 0.099 12.9 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TrwB_AAD_bind PF10412.9 gi|119873305|ref|YP_931312.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|119873305|ref|YP_931312.1| - 0.024 14.4 0.1 0.076 12.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|119873305|ref|YP_931312.1| - 0.034 14.1 0.1 0.12 12.3 0.1 1.9 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Pox_A32 PF04665.12 gi|119873305|ref|YP_931312.1| - 0.036 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 Poxvirus A32 protein ABC_ATPase PF09818.9 gi|119873305|ref|YP_931312.1| - 0.04 12.7 0.1 2.6 6.7 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|119873305|ref|YP_931312.1| - 0.042 13.9 0.0 0.083 13.0 0.0 1.7 2 0 0 2 2 1 0 50S ribosome-binding GTPase ATPase PF06745.13 gi|119873305|ref|YP_931312.1| - 0.044 13.1 0.0 0.13 11.6 0.0 1.7 2 0 0 2 2 2 0 KaiC Mg_chelatase PF01078.21 gi|119873305|ref|YP_931312.1| - 0.045 13.1 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|119873305|ref|YP_931312.1| - 0.05 14.2 0.0 0.11 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|119873305|ref|YP_931312.1| - 0.055 12.8 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region G-alpha PF00503.20 gi|119873305|ref|YP_931312.1| - 0.077 12.1 0.0 0.14 11.3 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit Adeno_IVa2 PF02456.15 gi|119873305|ref|YP_931312.1| - 0.077 11.8 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein cobW PF02492.19 gi|119873305|ref|YP_931312.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP-synt_ab PF00006.25 gi|119873305|ref|YP_931312.1| - 0.079 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain CobU PF02283.16 gi|119873305|ref|YP_931312.1| - 0.081 12.5 0.1 7.2 6.1 0.0 2.3 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATP_bind_1 PF03029.17 gi|119873305|ref|YP_931312.1| - 0.085 12.6 0.0 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF815 PF05673.13 gi|119873305|ref|YP_931312.1| - 0.088 11.9 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.6 gi|119873305|ref|YP_931312.1| - 0.13 12.3 0.0 1.1 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|119873305|ref|YP_931312.1| - 0.16 11.7 0.0 0.36 10.6 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_7 PF12775.7 gi|119873305|ref|YP_931312.1| - 0.16 11.4 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Roc PF08477.13 gi|119873305|ref|YP_931312.1| - 0.16 12.2 0.0 0.4 10.9 0.0 1.6 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase Rad17 PF03215.15 gi|119873305|ref|YP_931312.1| - 0.18 11.7 0.0 0.27 11.1 0.0 1.4 1 1 0 1 1 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|119873305|ref|YP_931312.1| - 0.18 12.2 0.0 0.32 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase PPV_E1_C PF00519.17 gi|119873305|ref|YP_931312.1| - 0.25 10.1 0.0 0.39 9.5 0.0 1.2 1 0 0 1 1 1 0 Papillomavirus helicase Molybdopterin PF00384.22 gi|119873306|ref|YP_931313.1| - 3.3e-23 82.4 0.0 1.3e-21 77.1 0.0 2.6 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119873306|ref|YP_931313.1| - 5e-05 23.3 0.0 0.00097 19.1 0.0 2.6 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain TatD_DNase PF01026.21 gi|119873307|ref|YP_931314.1| - 2.3e-45 155.0 0.0 2.6e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Metallophos PF00149.28 gi|119873308|ref|YP_931315.1| - 5e-24 85.9 0.0 6.2e-24 85.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase dUTPase PF00692.19 gi|119873309|ref|YP_931316.1| - 1.9e-20 72.9 0.0 1e-19 70.5 0.0 1.8 1 1 1 2 2 2 1 dUTPase DCD PF06559.11 gi|119873309|ref|YP_931316.1| - 0.00082 18.3 0.0 0.0026 16.6 0.0 1.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ThiS PF02597.20 gi|119873311|ref|YP_931318.1| - 6.5e-06 26.7 0.0 7.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|119873311|ref|YP_931318.1| - 0.034 14.5 0.0 0.038 14.3 0.0 1.3 1 1 0 1 1 1 0 Urm1 (Ubiquitin related modifier) DNA_binding_1 PF01035.20 gi|119873312|ref|YP_931319.1| - 1.5e-22 79.5 0.0 2.4e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.6 gi|119873313|ref|YP_931320.1| - 2.8e-10 40.8 0.0 3.2e-10 40.6 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119873313|ref|YP_931320.1| - 6.6e-06 26.6 0.0 8.4e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|119873313|ref|YP_931320.1| - 0.00026 21.0 0.1 0.00054 20.0 0.1 1.5 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Hydrolase_3 PF08282.12 gi|119873314|ref|YP_931321.1| - 7e-10 39.1 0.0 8.4e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|119873314|ref|YP_931321.1| - 1.3e-06 28.9 0.9 0.0029 17.9 0.0 2.9 2 1 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|119873314|ref|YP_931321.1| - 0.00065 20.2 0.6 0.0014 19.1 0.6 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|119873314|ref|YP_931321.1| - 0.01 15.9 1.0 0.25 11.4 0.0 2.4 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase PhoU PF01895.19 gi|119873315|ref|YP_931322.1| - 2e-12 47.4 4.8 5.5e-09 36.4 0.3 3.0 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|119873315|ref|YP_931322.1| - 1.2e-06 28.3 0.1 1.2e-06 28.3 0.1 2.8 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|119873315|ref|YP_931322.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DUF1614 PF07758.11 gi|119873316|ref|YP_931323.1| - 1.1e-46 159.0 12.6 1.1e-46 159.0 12.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DMRL_synthase PF00885.19 gi|119873317|ref|YP_931324.1| - 8.2e-08 32.2 0.1 1.1e-07 31.8 0.1 1.2 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase RHH_1 PF01402.21 gi|119873318|ref|YP_931325.1| - 4.1e-10 39.2 0.1 7.7e-10 38.4 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|119873318|ref|YP_931325.1| - 3.3e-06 27.2 1.5 5.8e-06 26.4 0.8 1.8 1 1 1 2 2 2 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|119873318|ref|YP_931325.1| - 9.9e-06 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain PSK_trans_fac PF07704.11 gi|119873318|ref|YP_931325.1| - 0.00018 22.2 0.9 0.00028 21.6 0.6 1.5 1 1 0 1 1 1 1 Rv0623-like transcription factor HicB_lk_antitox PF15919.5 gi|119873318|ref|YP_931325.1| - 0.0016 18.5 0.1 0.014 15.5 0.0 2.0 2 0 0 2 2 2 1 HicB_like antitoxin of bacterial toxin-antitoxin system VapB_antitoxin PF09957.9 gi|119873318|ref|YP_931325.1| - 0.022 14.6 0.1 0.043 13.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB RHH_5 PF07878.11 gi|119873318|ref|YP_931325.1| - 0.033 14.1 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Pigment_DH PF06324.11 gi|119873318|ref|YP_931325.1| - 0.23 11.6 0.0 0.4 10.9 0.0 1.4 1 0 0 1 1 1 0 Pigment-dispersing hormone (PDH) Prok-JAB PF14464.6 gi|119873319|ref|YP_931326.1| - 1.3e-11 44.2 0.0 1.5e-11 44.1 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M24 PF00557.24 gi|119873320|ref|YP_931327.1| - 2.1e-56 190.9 0.0 2.9e-56 190.5 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|119873320|ref|YP_931327.1| - 8.7e-08 32.9 0.0 1.8e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain FAD-oxidase_C PF02913.19 gi|119873321|ref|YP_931328.1| - 8.4e-50 169.7 0.0 1.3e-49 169.1 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|119873321|ref|YP_931328.1| - 1e-40 138.7 0.3 2.1e-40 137.7 0.3 1.6 1 0 0 1 1 1 1 FAD binding domain HTH_24 PF13412.6 gi|119873322|ref|YP_931329.1| - 7.8e-07 28.6 0.1 5.2e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|119873322|ref|YP_931329.1| - 2e-06 27.6 1.9 3.4e-05 23.7 0.4 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|119873322|ref|YP_931329.1| - 2.5e-06 27.3 0.0 6.9e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|119873322|ref|YP_931329.1| - 4.6e-05 23.2 0.0 0.0005 20.0 0.0 2.2 2 1 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|119873322|ref|YP_931329.1| - 6.9e-05 22.7 0.1 0.0022 17.8 0.0 2.4 2 1 1 3 3 3 1 MarR family FaeA PF04703.12 gi|119873322|ref|YP_931329.1| - 0.0001 22.6 0.2 0.00021 21.6 0.0 1.6 2 0 0 2 2 1 1 FaeA-like protein GntR PF00392.21 gi|119873322|ref|YP_931329.1| - 0.00021 20.8 0.1 0.69 9.6 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|119873322|ref|YP_931329.1| - 0.0011 18.7 0.1 0.0063 16.3 0.0 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|119873322|ref|YP_931329.1| - 0.0029 17.4 0.0 0.0066 16.2 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|119873322|ref|YP_931329.1| - 0.0038 17.0 0.0 0.016 15.0 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|119873322|ref|YP_931329.1| - 0.011 15.9 0.2 0.026 14.7 0.0 1.7 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF1805 PF08827.11 gi|119873322|ref|YP_931329.1| - 0.02 15.2 0.0 0.087 13.2 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1805) Rrf2 PF02082.20 gi|119873322|ref|YP_931329.1| - 0.034 14.5 0.0 0.082 13.3 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator Penicillinase_R PF03965.16 gi|119873322|ref|YP_931329.1| - 0.034 14.5 0.0 0.07 13.5 0.0 1.5 1 1 1 2 2 2 0 Penicillinase repressor HTH_27 PF13463.6 gi|119873322|ref|YP_931329.1| - 0.042 14.3 0.1 0.26 11.8 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_41 PF14502.6 gi|119873322|ref|YP_931329.1| - 0.045 13.5 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|119873322|ref|YP_931329.1| - 0.047 13.7 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|119873322|ref|YP_931329.1| - 0.048 13.6 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_50 PF18024.1 gi|119873322|ref|YP_931329.1| - 0.055 13.1 0.1 7.9 6.2 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|119873322|ref|YP_931329.1| - 0.1 12.4 0.0 0.42 10.4 0.0 2.0 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain P22_Cro PF14549.6 gi|119873322|ref|YP_931329.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro RNA_pol_L PF01193.24 gi|119873322|ref|YP_931329.1| - 0.12 11.8 0.5 0.29 10.6 0.1 1.9 1 1 1 2 2 2 0 RNA polymerase Rpb3/Rpb11 dimerisation domain OrfB_Zn_ribbon PF07282.11 gi|119873324|ref|YP_931331.1| - 1.3e-08 34.6 0.0 2.6e-08 33.7 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|119873324|ref|YP_931331.1| - 0.096 12.4 1.2 0.17 11.6 0.3 1.8 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|119873324|ref|YP_931331.1| - 0.35 10.6 1.5 0.7 9.6 1.5 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit ATPase PF06745.13 gi|119873325|ref|YP_931332.1| - 1.1e-08 34.7 0.0 2.7e-08 33.4 0.0 1.7 1 1 0 1 1 1 1 KaiC AAA PF00004.29 gi|119873325|ref|YP_931332.1| - 8.7e-08 32.7 0.0 1.1e-07 32.3 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|119873325|ref|YP_931332.1| - 1.3e-05 24.9 0.1 2.9e-05 23.7 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|119873325|ref|YP_931332.1| - 9.8e-05 22.4 0.0 0.00043 20.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|119873325|ref|YP_931332.1| - 0.00014 21.6 0.0 0.03 14.1 0.0 2.3 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119873325|ref|YP_931332.1| - 0.00017 21.9 0.0 0.00057 20.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|119873325|ref|YP_931332.1| - 0.00019 21.2 0.0 0.00047 19.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|119873325|ref|YP_931332.1| - 0.0003 21.2 0.0 0.00043 20.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain RuvB_N PF05496.12 gi|119873325|ref|YP_931332.1| - 0.0019 18.0 0.0 0.0029 17.4 0.0 1.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|119873325|ref|YP_931332.1| - 0.003 17.5 0.0 0.0032 17.4 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RecA PF00154.21 gi|119873325|ref|YP_931332.1| - 0.0042 16.6 0.0 0.0058 16.1 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|119873325|ref|YP_931332.1| - 0.0049 16.9 0.0 0.014 15.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|119873325|ref|YP_931332.1| - 0.005 17.4 0.0 0.0088 16.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|119873325|ref|YP_931332.1| - 0.0058 16.4 0.0 0.009 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|119873325|ref|YP_931332.1| - 0.0082 16.6 0.0 0.0089 16.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain RNA12 PF10443.9 gi|119873325|ref|YP_931332.1| - 0.014 14.2 0.0 0.017 13.9 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_23 PF13476.6 gi|119873325|ref|YP_931332.1| - 0.021 15.3 0.1 0.033 14.7 0.1 1.2 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|119873325|ref|YP_931332.1| - 0.022 14.2 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein CobU PF02283.16 gi|119873325|ref|YP_931332.1| - 0.024 14.2 0.1 0.039 13.5 0.1 1.3 1 0 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase RNA_helicase PF00910.22 gi|119873325|ref|YP_931332.1| - 0.068 13.6 0.0 0.46 10.9 0.0 2.2 2 1 1 3 3 3 0 RNA helicase TIP49 PF06068.13 gi|119873325|ref|YP_931332.1| - 0.069 12.3 0.0 0.093 11.9 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain SMC_N PF02463.19 gi|119873325|ref|YP_931332.1| - 0.11 11.9 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873325|ref|YP_931332.1| - 0.17 11.7 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|119873325|ref|YP_931332.1| - 0.17 11.8 0.0 0.81 9.6 0.0 1.8 1 1 1 2 2 2 0 NTPase DUF2075 PF09848.9 gi|119873325|ref|YP_931332.1| - 0.22 10.7 0.0 0.48 9.6 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|119873327|ref|YP_931334.1| - 3.8e-07 29.7 0.0 6e-05 22.5 0.0 2.7 1 1 0 1 1 1 1 KaiC AAA_16 PF13191.6 gi|119873327|ref|YP_931334.1| - 7.9e-07 29.6 0.0 1.7e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|119873327|ref|YP_931334.1| - 2e-05 24.6 0.0 6.2e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|119873327|ref|YP_931334.1| - 6.6e-05 23.2 0.0 0.00012 22.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|119873327|ref|YP_931334.1| - 0.0001 22.7 0.0 0.00041 20.8 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|119873327|ref|YP_931334.1| - 0.00012 22.1 0.0 0.00053 20.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|119873327|ref|YP_931334.1| - 0.00014 21.5 0.0 0.00023 20.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|119873327|ref|YP_931334.1| - 0.00036 21.0 0.0 0.00055 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|119873327|ref|YP_931334.1| - 0.00062 19.5 0.0 0.0015 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|119873327|ref|YP_931334.1| - 0.00071 19.4 0.0 0.0029 17.4 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain CobU PF02283.16 gi|119873327|ref|YP_931334.1| - 0.0015 18.1 0.0 0.012 15.2 0.0 2.2 2 1 0 2 2 2 1 Cobinamide kinase / cobinamide phosphate guanyltransferase NACHT PF05729.12 gi|119873327|ref|YP_931334.1| - 0.0018 18.2 0.0 0.0059 16.5 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_11 PF13086.6 gi|119873327|ref|YP_931334.1| - 0.0023 17.8 0.0 0.0033 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|119873327|ref|YP_931334.1| - 0.0024 16.6 0.0 1.1 7.8 0.0 2.1 1 1 0 2 2 2 2 GvpD gas vesicle protein TIP49 PF06068.13 gi|119873327|ref|YP_931334.1| - 0.0031 16.8 0.0 0.0053 16.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|119873327|ref|YP_931334.1| - 0.004 17.7 0.0 0.011 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|119873327|ref|YP_931334.1| - 0.0049 17.2 0.0 0.0097 16.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_23 PF13476.6 gi|119873327|ref|YP_931334.1| - 0.0087 16.6 0.0 0.015 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119873327|ref|YP_931334.1| - 0.01 15.5 0.1 0.04 13.7 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|119873327|ref|YP_931334.1| - 0.012 15.8 0.0 0.019 15.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|119873327|ref|YP_931334.1| - 0.014 14.8 0.1 0.021 14.2 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|119873327|ref|YP_931334.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|119873327|ref|YP_931334.1| - 0.024 15.0 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|119873327|ref|YP_931334.1| - 0.038 13.1 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 T2SSE PF00437.20 gi|119873327|ref|YP_931334.1| - 0.039 13.0 0.0 0.15 11.1 0.0 1.8 1 1 1 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|119873327|ref|YP_931334.1| - 0.046 13.9 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119873327|ref|YP_931334.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase PhoH PF02562.16 gi|119873327|ref|YP_931334.1| - 0.065 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein RecA PF00154.21 gi|119873327|ref|YP_931334.1| - 0.093 12.2 0.0 0.2 11.1 0.0 1.5 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF2075 PF09848.9 gi|119873327|ref|YP_931334.1| - 0.11 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|119873327|ref|YP_931334.1| - 0.14 11.4 0.0 0.32 10.3 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain TatD_DNase PF01026.21 gi|119873328|ref|YP_931335.1| - 1.8e-25 89.8 0.0 2.4e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase PTE PF02126.18 gi|119873328|ref|YP_931335.1| - 0.012 15.1 0.0 0.042 13.3 0.0 1.7 2 0 0 2 2 2 0 Phosphotriesterase family Vta1_C PF18097.1 gi|119873329|ref|YP_931336.1| - 0.019 14.7 0.0 0.031 14.0 0.0 1.3 1 0 0 1 1 1 0 Vta1 C-terminal domain DUF4404 PF14357.6 gi|119873329|ref|YP_931336.1| - 0.18 12.5 0.0 0.18 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) DegT_DnrJ_EryC1 PF01041.17 gi|119873330|ref|YP_931337.1| - 7.4e-116 387.4 0.3 1.3e-115 386.5 0.3 1.3 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|119873330|ref|YP_931337.1| - 1.9e-06 27.1 1.4 2.2e-06 26.9 0.6 1.4 2 0 0 2 2 2 1 Aminotransferase class-V TFIIF_beta PF02270.15 gi|119873330|ref|YP_931337.1| - 0.00016 21.7 0.2 0.33 11.1 0.1 3.0 3 0 0 3 3 3 2 TFIIF, beta subunit HTH domain Cys_Met_Meta_PP PF01053.20 gi|119873330|ref|YP_931337.1| - 0.00018 20.2 0.1 0.00027 19.6 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|119873330|ref|YP_931337.1| - 0.00075 18.9 0.1 0.0011 18.3 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase OKR_DC_1 PF01276.20 gi|119873330|ref|YP_931337.1| - 0.045 12.5 0.0 0.064 12.0 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Na_H_antiporter PF03553.14 gi|119873331|ref|YP_931338.1| - 0.0049 16.2 2.8 0.0055 16.0 2.8 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter family FeS_assembly_P PF01883.19 gi|119873332|ref|YP_931339.1| - 6.2e-18 64.7 1.0 8.8e-18 64.3 1.0 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein BET PF17035.5 gi|119873332|ref|YP_931339.1| - 0.08 13.1 0.1 6.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation TusA PF01206.17 gi|119873333|ref|YP_931340.1| - 2.5e-10 40.0 0.1 2.7e-10 39.9 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|119873333|ref|YP_931340.1| - 0.012 15.4 0.0 0.021 14.7 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Glutaredoxin2_C PF04399.13 gi|119873333|ref|YP_931340.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.0 1 0 0 1 1 1 0 Glutaredoxin 2, C terminal domain MerE PF05052.12 gi|119873333|ref|YP_931340.1| - 0.17 11.9 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 MerE protein Flavin_Reduct PF01613.18 gi|119873334|ref|YP_931341.1| - 4.6e-21 75.5 0.0 5.4e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain VWA_CoxE PF05762.14 gi|119873335|ref|YP_931342.1| - 3.1e-11 43.1 0.2 5.2e-11 42.4 0.2 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|119873335|ref|YP_931342.1| - 7.4e-06 26.6 0.1 2.3e-05 25.0 0.1 1.9 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|119873335|ref|YP_931342.1| - 0.0044 17.3 0.2 0.012 15.8 0.2 1.7 1 1 0 1 1 1 1 von Willebrand factor type A domain Acyl-CoA_dh_1 PF00441.24 gi|119873337|ref|YP_931344.1| - 5.9e-33 114.2 1.7 8.5e-33 113.7 1.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|119873337|ref|YP_931344.1| - 2.4e-22 79.7 0.2 6.5e-22 78.3 0.2 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|119873337|ref|YP_931344.1| - 1.9e-16 60.0 0.0 3.9e-16 59.0 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|119873337|ref|YP_931344.1| - 1.4e-14 54.6 0.8 2.4e-14 53.8 0.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Pribosyltran PF00156.27 gi|119873338|ref|YP_931345.1| - 1.2e-12 47.7 0.0 1.6e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|119873338|ref|YP_931345.1| - 5.7e-05 23.1 0.0 0.00011 22.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix UPRTase PF14681.6 gi|119873338|ref|YP_931345.1| - 0.099 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CBS PF00571.28 gi|119873339|ref|YP_931346.1| - 1.1e-11 44.9 0.4 1e-10 41.9 0.2 2.1 2 0 0 2 2 2 1 CBS domain GGDEF_2 PF17853.1 gi|119873339|ref|YP_931346.1| - 0.063 13.5 0.1 0.088 13.1 0.1 1.4 1 1 0 1 1 1 0 GGDEF-like domain QueC PF06508.13 gi|119873340|ref|YP_931347.1| - 7.1e-40 136.7 0.1 9.3e-40 136.4 0.1 1.1 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|119873340|ref|YP_931347.1| - 2.9e-05 23.7 0.0 3.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) CN_hydrolase PF00795.22 gi|119873341|ref|YP_931348.1| - 7e-34 117.3 0.0 8.5e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase LysE PF01810.18 gi|119873342|ref|YP_931349.1| - 5.5e-25 87.9 12.5 6.3e-25 87.8 12.5 1.0 1 0 0 1 1 1 1 LysE type translocator DUF72 PF01904.18 gi|119873343|ref|YP_931350.1| - 1.1e-41 143.3 0.6 1.3e-41 143.2 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF2255 PF10012.9 gi|119873343|ref|YP_931350.1| - 0.11 12.7 0.3 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2255) AhpC-TSA PF00578.21 gi|119873344|ref|YP_931351.1| - 2.3e-26 92.1 0.0 3.2e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|119873344|ref|YP_931351.1| - 1.1e-17 63.6 0.2 1.8e-17 62.9 0.2 1.4 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|119873344|ref|YP_931351.1| - 3.9e-12 46.1 0.0 5.2e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin DUF429 PF04250.13 gi|119873345|ref|YP_931352.1| - 3.1e-12 46.7 5.7 1.6e-08 34.6 5.7 2.9 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DAO PF01266.24 gi|119873346|ref|YP_931353.1| - 6.8e-42 144.3 3.0 8.3e-42 144.0 3.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|119873346|ref|YP_931353.1| - 1.5e-09 37.5 0.4 0.0015 17.9 0.4 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|119873346|ref|YP_931353.1| - 7.3e-08 32.5 0.7 1.5e-07 31.5 0.7 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|119873346|ref|YP_931353.1| - 7.4e-07 28.6 1.8 1.5e-05 24.2 0.4 2.1 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|119873346|ref|YP_931353.1| - 4.1e-05 23.1 0.1 0.054 12.8 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|119873346|ref|YP_931353.1| - 5e-05 22.5 1.2 0.043 12.9 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|119873346|ref|YP_931353.1| - 0.00016 21.0 0.6 0.00026 20.4 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|119873346|ref|YP_931353.1| - 0.00031 20.1 1.0 0.0038 16.5 0.8 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|119873346|ref|YP_931353.1| - 0.00078 18.3 1.2 0.0019 17.0 0.3 1.9 2 1 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|119873346|ref|YP_931353.1| - 0.001 19.1 2.4 0.78 9.7 0.2 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding ApbA PF02558.16 gi|119873346|ref|YP_931353.1| - 0.0022 17.6 0.5 0.0041 16.8 0.5 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|119873346|ref|YP_931353.1| - 0.0025 18.3 0.5 0.0084 16.6 0.5 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119873346|ref|YP_931353.1| - 0.012 14.7 0.6 2.2 7.3 0.8 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|119873346|ref|YP_931353.1| - 0.022 14.3 0.3 0.035 13.7 0.3 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_oxidored PF12831.7 gi|119873346|ref|YP_931353.1| - 0.029 13.7 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|119873346|ref|YP_931353.1| - 0.029 14.8 0.0 0.065 13.7 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|119873346|ref|YP_931353.1| - 0.03 13.6 0.5 0.072 12.3 0.5 1.7 1 0 0 1 1 1 0 Thi4 family 3HCDH_N PF02737.18 gi|119873346|ref|YP_931353.1| - 0.074 12.9 0.2 0.12 12.3 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|119873346|ref|YP_931353.1| - 0.089 11.6 0.4 0.15 10.9 0.4 1.3 1 0 0 1 1 1 0 Tryptophan halogenase IlvN PF07991.12 gi|119873346|ref|YP_931353.1| - 0.13 11.8 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain AlaDh_PNT_C PF01262.21 gi|119873346|ref|YP_931353.1| - 0.14 11.5 0.3 0.31 10.3 0.3 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain SBP_bac_3 PF00497.20 gi|119873347|ref|YP_931354.1| - 2.3e-55 187.5 0.1 2.9e-55 187.1 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|119873347|ref|YP_931354.1| - 3.1e-08 33.8 0.0 2.6e-07 30.8 0.0 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|119873347|ref|YP_931354.1| - 0.002 18.1 0.1 0.0036 17.3 0.1 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|119873347|ref|YP_931354.1| - 0.0032 17.1 0.3 0.032 13.8 0.3 2.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein CbtB PF09489.10 gi|119873347|ref|YP_931354.1| - 0.016 15.3 0.6 0.032 14.4 0.6 1.5 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtB) DctP PF03480.13 gi|119873347|ref|YP_931354.1| - 0.066 12.5 0.0 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein, family 7 Ribosomal_S14 PF00253.21 gi|119873348|ref|YP_931355.1| - 1.7e-11 43.7 4.3 2.1e-11 43.4 4.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|119873348|ref|YP_931355.1| - 0.021 14.7 5.2 0.028 14.3 5.2 1.2 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_L37e PF01907.19 gi|119873348|ref|YP_931355.1| - 6 7.1 8.8 1.5 9.0 0.8 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e Ribosomal_S8 PF00410.19 gi|119873349|ref|YP_931356.1| - 3e-22 78.9 0.5 8.3e-22 77.5 0.5 1.6 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L32e PF01655.18 gi|119873350|ref|YP_931357.1| - 3.2e-34 117.6 0.1 4e-34 117.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.20 gi|119873351|ref|YP_931358.1| - 1.3e-45 155.0 9.0 1.5e-45 154.8 9.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.7 gi|119873351|ref|YP_931358.1| - 0.013 15.6 3.3 0.31 11.2 0.1 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain Ribosomal_L5e PF17144.4 gi|119873352|ref|YP_931359.1| - 1.5e-30 106.4 0.7 2e-18 66.9 0.3 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|119873352|ref|YP_931359.1| - 5.9e-12 46.4 0.3 1.1e-11 45.5 0.3 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|119873352|ref|YP_931359.1| - 4.4e-09 36.7 0.1 7e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 4HBT PF03061.22 gi|119873353|ref|YP_931360.1| - 9.6e-19 67.5 5.4 6.4e-10 39.3 0.8 2.4 2 0 0 2 2 2 2 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|119873353|ref|YP_931360.1| - 0.015 14.8 0.7 0.085 12.4 0.1 2.2 2 0 0 2 2 2 0 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|119873353|ref|YP_931360.1| - 0.11 12.6 0.0 6.4 6.9 0.0 2.3 2 0 0 2 2 2 0 N-terminal half of MaoC dehydratase MMR_HSR1 PF01926.23 gi|119873355|ref|YP_931362.1| - 1.1e-07 32.0 0.0 1.2e-07 31.8 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|119873355|ref|YP_931362.1| - 0.0034 17.1 0.2 0.0085 15.8 0.2 1.6 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|119873355|ref|YP_931362.1| - 0.0037 16.8 0.1 0.0044 16.6 0.1 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|119873355|ref|YP_931362.1| - 0.052 13.0 0.0 0.06 12.8 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|119873355|ref|YP_931362.1| - 0.054 13.3 0.1 2.1 8.0 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Arf PF00025.21 gi|119873355|ref|YP_931362.1| - 0.057 12.9 0.0 0.063 12.7 0.0 1.0 1 0 0 1 1 1 0 ADP-ribosylation factor family Roc PF08477.13 gi|119873355|ref|YP_931362.1| - 0.15 12.2 0.1 0.39 10.9 0.1 1.7 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase GntR PF00392.21 gi|119873358|ref|YP_931365.1| - 7.6e-05 22.3 0.5 0.00022 20.8 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family EF-G-binding_N PF07299.11 gi|119873358|ref|YP_931365.1| - 0.014 15.9 0.4 0.034 14.7 0.2 1.6 1 1 1 2 2 2 0 Elongation factor G-binding protein, N-terminal VapB_antitoxin PF09957.9 gi|119873358|ref|YP_931365.1| - 0.035 14.0 0.2 0.099 12.6 0.2 1.8 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Apolipoprotein PF01442.18 gi|119873358|ref|YP_931365.1| - 0.035 14.0 1.4 0.041 13.8 1.4 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain MMPL PF03176.15 gi|119873358|ref|YP_931365.1| - 0.044 12.7 0.1 0.057 12.3 0.1 1.1 1 0 0 1 1 1 0 MMPL family Cullin_Nedd8 PF10557.9 gi|119873358|ref|YP_931365.1| - 0.047 13.7 0.1 0.27 11.3 0.0 2.3 2 2 0 2 2 2 0 Cullin protein neddylation domain ASL_C PF08328.11 gi|119873358|ref|YP_931365.1| - 0.067 13.3 0.1 0.077 13.1 0.1 1.1 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal HTH_24 PF13412.6 gi|119873358|ref|YP_931365.1| - 0.086 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Diphthami_syn_2 PF01902.17 gi|119873359|ref|YP_931366.1| - 1.1e-53 182.0 0.4 1.4e-53 181.7 0.4 1.1 1 0 0 1 1 1 1 Diphthamide synthase Pan_kinase PF03309.14 gi|119873359|ref|YP_931366.1| - 0.039 13.8 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 Type III pantothenate kinase AAA_14 PF13173.6 gi|119873359|ref|YP_931366.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Adenine_glyco PF03352.13 gi|119873359|ref|YP_931366.1| - 0.17 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyladenine glycosylase SfsA PF03749.13 gi|119873361|ref|YP_931368.1| - 6e-41 139.6 0.0 7.8e-41 139.2 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|119873361|ref|YP_931368.1| - 6.1e-17 61.5 0.0 1.3e-16 60.5 0.0 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain Lactamase_B PF00753.27 gi|119873362|ref|YP_931369.1| - 6.2e-19 68.8 0.4 1e-18 68.1 0.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|119873362|ref|YP_931369.1| - 1.9e-05 24.3 0.0 3.1e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AbiJ_NTD3 PF18860.1 gi|119873362|ref|YP_931369.1| - 0.1 12.1 0.2 0.7 9.4 0.0 2.2 2 1 1 3 3 3 0 AbiJ N-terminal domain 3 GAPES2 PF17156.4 gi|119873362|ref|YP_931369.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Gammaproteobacterial periplasmic sensor domain HTH_Tnp_Tc3_1 PF11427.8 gi|119873362|ref|YP_931369.1| - 0.18 11.7 0.1 0.58 10.0 0.0 1.9 2 0 0 2 2 2 0 Tc3 transposase Sec61_beta PF03911.16 gi|119873363|ref|YP_931370.1| - 4.6e-09 36.2 0.3 5.2e-09 36.0 0.3 1.1 1 0 0 1 1 1 1 Sec61beta family TauE PF01925.19 gi|119873364|ref|YP_931371.1| - 4.6e-42 144.3 44.3 5.7e-42 144.0 44.3 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF1230 PF06799.11 gi|119873364|ref|YP_931371.1| - 3.8 7.6 9.0 0.2 11.8 1.4 2.2 2 0 0 2 2 2 0 Conserved in the green lineage and diatoms 27 Frag1 PF10277.9 gi|119873365|ref|YP_931372.1| - 0.04 13.5 0.1 0.053 13.1 0.1 1.2 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family MFS_1 PF07690.16 gi|119873366|ref|YP_931373.1| - 3.4e-30 105.2 46.3 3.5e-19 69.0 25.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|119873366|ref|YP_931373.1| - 0.00056 18.9 3.1 0.00056 18.9 3.1 2.1 2 0 0 2 2 2 2 MFS_1 like family MFS_3 PF05977.13 gi|119873366|ref|YP_931373.1| - 0.0015 17.0 23.6 0.0022 16.5 23.6 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector DUF962 PF06127.11 gi|119873366|ref|YP_931373.1| - 0.41 10.8 2.3 30 4.8 1.7 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF962) Usp PF00582.26 gi|119873367|ref|YP_931374.1| - 3.8e-37 127.9 0.5 4.2e-37 127.8 0.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|119873367|ref|YP_931374.1| - 0.022 14.8 0.0 0.029 14.4 0.0 1.1 1 0 0 1 1 1 0 DNA photolyase Importin_rep_3 PF18806.1 gi|119873367|ref|YP_931374.1| - 0.095 12.8 0.3 0.81 9.8 0.0 2.1 1 1 1 2 2 2 0 Importin 13 repeat CBS PF00571.28 gi|119873368|ref|YP_931375.1| - 9.4e-26 90.0 4.2 3.1e-12 46.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.14 gi|119873368|ref|YP_931375.1| - 0.0037 17.7 0.9 0.96 10.0 0.2 2.2 1 1 0 2 2 2 2 Ribosomal protein L9, C-terminal domain Cas_csx3 PF09620.10 gi|119873368|ref|YP_931375.1| - 0.019 14.8 1.1 0.035 14.0 0.1 1.8 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_csx3) HTH_21 PF13276.6 gi|119873368|ref|YP_931375.1| - 0.15 12.2 0.2 4.3 7.6 0.0 2.4 2 0 0 2 2 2 0 HTH-like domain GA-like PF17573.2 gi|119873369|ref|YP_931376.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 GA-like domain Cob_adeno_trans PF01923.18 gi|119873370|ref|YP_931377.1| - 1.4e-14 54.6 0.0 1.8e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PPDK_N PF01326.19 gi|119873371|ref|YP_931378.1| - 3.5e-114 381.5 0.2 5.2e-114 380.9 0.2 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|119873371|ref|YP_931378.1| - 2.6e-76 256.5 0.0 4.8e-76 255.7 0.0 1.4 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|119873371|ref|YP_931378.1| - 1.2e-28 98.6 0.2 4e-28 96.9 0.2 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|119873373|ref|YP_931380.1| - 9.2e-25 87.9 0.0 5e-24 85.5 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|119873373|ref|YP_931380.1| - 2.1e-08 34.2 0.0 4.4e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain GlutR_dimer PF00745.20 gi|119873374|ref|YP_931381.1| - 0.016 15.7 0.2 0.071 13.6 0.2 1.9 1 1 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain DUF3552 PF12072.8 gi|119873374|ref|YP_931381.1| - 0.047 13.1 0.1 0.049 13.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) DUF2076 PF09849.9 gi|119873375|ref|YP_931382.1| - 0.05 13.6 0.0 0.054 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) Peptidase_M22 PF00814.25 gi|119873376|ref|YP_931383.1| - 7.9e-75 252.0 1.7 9.2e-75 251.8 1.7 1.0 1 0 0 1 1 1 1 Glycoprotease family Elong_Iki1 PF10483.9 gi|119873376|ref|YP_931383.1| - 0.22 11.0 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 Ribosomal_S27 PF01599.19 gi|119873377|ref|YP_931384.1| - 4.6e-09 36.3 0.3 5.8e-09 36.0 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|119873377|ref|YP_931384.1| - 0.00024 21.0 3.4 0.00068 19.5 3.4 1.8 1 1 0 1 1 1 1 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|119873377|ref|YP_931384.1| - 0.00028 20.8 0.2 0.00032 20.5 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|119873377|ref|YP_931384.1| - 0.0015 18.5 4.5 0.0023 17.9 4.5 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|119873377|ref|YP_931384.1| - 0.0059 16.7 0.3 0.0082 16.2 0.3 1.3 1 0 0 1 1 1 1 Ribosomal L37ae protein family RNA_POL_M_15KD PF02150.16 gi|119873377|ref|YP_931384.1| - 0.007 16.2 1.6 0.017 15.0 1.6 1.7 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|119873377|ref|YP_931384.1| - 0.011 15.4 6.0 0.019 14.6 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119873377|ref|YP_931384.1| - 0.017 14.8 0.4 0.017 14.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.10 gi|119873377|ref|YP_931384.1| - 0.018 15.2 1.9 0.033 14.3 1.0 1.7 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.6 gi|119873377|ref|YP_931384.1| - 0.027 13.9 4.6 0.09 12.2 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|119873377|ref|YP_931384.1| - 0.047 14.0 2.6 0.16 12.4 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF1451 PF07295.11 gi|119873377|ref|YP_931384.1| - 0.053 13.6 2.4 0.066 13.3 2.1 1.3 1 1 0 1 1 1 0 Zinc-ribbon containing domain DUF35_N PF12172.8 gi|119873377|ref|YP_931384.1| - 0.081 12.8 3.5 3.3 7.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|119873377|ref|YP_931384.1| - 0.11 12.9 2.3 0.18 12.2 2.3 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.7 gi|119873377|ref|YP_931384.1| - 0.13 12.3 2.8 0.45 10.6 2.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|119873377|ref|YP_931384.1| - 0.14 11.9 2.8 2.6 7.8 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf_UBZ PF18439.1 gi|119873377|ref|YP_931384.1| - 0.19 11.3 2.2 0.68 9.6 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_recom PF13408.6 gi|119873377|ref|YP_931384.1| - 0.22 12.1 2.8 0.46 11.0 2.8 1.5 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|119873377|ref|YP_931384.1| - 0.33 11.1 4.0 1.7 8.8 0.2 2.2 1 1 0 2 2 2 0 Zinc ribbon domain zf-RRN7 PF11781.8 gi|119873377|ref|YP_931384.1| - 0.37 10.5 4.5 0.93 9.2 0.1 2.4 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|119873377|ref|YP_931384.1| - 0.88 9.6 4.8 5.9 7.0 4.8 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf_C2H2_10 PF18414.1 gi|119873377|ref|YP_931384.1| - 1.2 8.8 4.2 5.1 6.7 0.6 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger NOB1_Zn_bind PF08772.11 gi|119873377|ref|YP_931384.1| - 2.3 8.5 7.6 0.72 10.1 1.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like YhfH PF14149.6 gi|119873377|ref|YP_931384.1| - 2.3 8.3 6.4 28 4.8 5.9 2.2 1 1 0 1 1 1 0 YhfH-like protein Ribosomal_S24e PF01282.19 gi|119873378|ref|YP_931385.1| - 2.9e-20 72.0 0.1 2.9e-20 72.0 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S24e MazG-like PF12643.7 gi|119873378|ref|YP_931385.1| - 0.004 17.4 2.2 0.04 14.2 0.7 2.6 1 1 2 3 3 3 1 MazG-like family PsiE PF06146.12 gi|119873379|ref|YP_931386.1| - 4.3e-12 46.2 6.4 4.3e-12 46.2 6.4 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E DUF373 PF04123.13 gi|119873379|ref|YP_931386.1| - 0.007 15.8 10.4 0.0085 15.6 10.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF2569 PF10754.9 gi|119873379|ref|YP_931386.1| - 0.35 11.3 8.8 0.42 11.0 8.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) DHHC PF01529.20 gi|119873379|ref|YP_931386.1| - 0.4 10.8 9.1 0.64 10.1 9.1 1.5 1 1 0 1 1 1 0 DHHC palmitoyltransferase Radical_SAM PF04055.21 gi|119873380|ref|YP_931387.1| - 1.7e-15 57.8 0.0 9.1e-15 55.4 0.0 2.2 3 0 0 3 3 3 1 Radical SAM superfamily B12-binding PF02310.19 gi|119873380|ref|YP_931387.1| - 0.0015 18.5 0.0 0.0064 16.5 0.0 2.1 2 0 0 2 2 2 1 B12 binding domain CPBP PF02517.16 gi|119873381|ref|YP_931388.1| - 1.3e-09 38.2 9.6 6.2e-09 36.1 9.6 2.0 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease CorA PF01544.18 gi|119873382|ref|YP_931389.1| - 2e-17 63.4 0.6 8.7e-17 61.4 0.6 1.7 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein OCD_Mu_crystall PF02423.15 gi|119873383|ref|YP_931390.1| - 7.2e-38 130.3 0.2 1.9e-37 128.9 0.2 1.6 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|119873383|ref|YP_931390.1| - 3.1e-05 24.1 0.0 5.5e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|119873383|ref|YP_931390.1| - 5.4e-05 22.6 0.5 7.8e-05 22.1 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.22 gi|119873383|ref|YP_931390.1| - 0.00021 22.1 0.0 0.00066 20.5 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|119873383|ref|YP_931390.1| - 0.0067 15.8 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|119873383|ref|YP_931390.1| - 0.011 16.4 0.0 0.022 15.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ResIII PF04851.15 gi|119873384|ref|YP_931391.1| - 1.1e-28 100.4 0.0 1e-27 97.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|119873384|ref|YP_931391.1| - 2.9e-17 63.0 0.0 9.7e-17 61.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|119873384|ref|YP_931391.1| - 1.7e-15 56.6 0.0 5.2e-15 55.1 0.0 1.9 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain ERCC3_RAD25_C PF16203.5 gi|119873384|ref|YP_931391.1| - 4.9e-14 52.1 0.1 7.5e-14 51.5 0.1 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|119873384|ref|YP_931391.1| - 2.3e-13 50.3 0.0 6.9e-13 48.7 0.0 1.8 1 1 0 1 1 1 1 DEAD/DEAH box helicase IstB_IS21 PF01695.17 gi|119873384|ref|YP_931391.1| - 0.02 14.7 0.0 0.057 13.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|119873384|ref|YP_931391.1| - 0.15 12.3 0.4 2.9 8.2 0.1 2.8 3 1 0 3 3 3 0 AAA domain DUF790 PF05626.11 gi|119873385|ref|YP_931392.1| - 4.6e-94 315.3 0.2 5.2e-94 315.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Radical_SAM PF04055.21 gi|119873386|ref|YP_931393.1| - 1.9e-18 67.4 0.0 3.6e-18 66.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|119873386|ref|YP_931393.1| - 1.5e-05 25.3 0.0 3.1e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|119873386|ref|YP_931393.1| - 0.04 14.0 0.1 0.24 11.6 0.1 2.1 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|119873387|ref|YP_931394.1| - 1.1e-11 44.3 12.6 4.6e-09 36.0 4.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|119873387|ref|YP_931394.1| - 5.5e-11 41.8 15.9 8.4e-09 34.9 4.8 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119873387|ref|YP_931394.1| - 1.3e-10 41.3 6.2 1.7e-10 40.8 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873387|ref|YP_931394.1| - 2.2e-10 41.3 7.2 0.00016 22.6 2.4 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119873387|ref|YP_931394.1| - 6.1e-10 39.1 7.5 7.9e-10 38.7 7.5 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873387|ref|YP_931394.1| - 1.2e-09 38.6 7.4 6.7e-09 36.2 7.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873387|ref|YP_931394.1| - 7.3e-08 32.5 5.8 1.4e-07 31.5 5.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119873387|ref|YP_931394.1| - 2.3e-07 30.5 11.2 5.8e-07 29.2 3.5 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119873387|ref|YP_931394.1| - 6.6e-07 30.0 8.9 7.8e-05 23.3 8.7 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|119873387|ref|YP_931394.1| - 7.5e-06 26.1 10.8 0.00038 20.7 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119873387|ref|YP_931394.1| - 6.3e-05 23.6 14.8 0.014 16.3 6.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119873387|ref|YP_931394.1| - 0.00047 20.6 9.4 0.071 13.6 8.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|119873387|ref|YP_931394.1| - 0.00095 19.3 3.2 0.011 15.8 0.3 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119873387|ref|YP_931394.1| - 0.0012 19.4 11.4 0.087 13.4 11.4 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|119873387|ref|YP_931394.1| - 0.0016 18.9 8.0 0.02 15.4 1.7 2.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|119873387|ref|YP_931394.1| - 0.012 16.4 2.1 0.19 12.6 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain DnaB_2 PF07261.11 gi|119873387|ref|YP_931394.1| - 0.067 12.9 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Replication initiation and membrane attachment Fer4_18 PF13746.6 gi|119873387|ref|YP_931394.1| - 0.56 10.4 10.6 1.4 9.1 3.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF401 PF04165.12 gi|119873388|ref|YP_931395.1| - 3.8e-50 171.4 30.3 4.6e-50 171.1 30.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) Ribosomal_S30 PF04758.14 gi|119873389|ref|YP_931396.1| - 2.2e-11 43.8 1.6 2.5e-11 43.6 1.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 OrfB_Zn_ribbon PF07282.11 gi|119873390|ref|YP_931397.1| - 8.9e-19 67.2 0.0 1.6e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zinc_ribbon_9 PF14369.6 gi|119873390|ref|YP_931397.1| - 0.028 14.7 1.8 0.51 10.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon zinc_ribbon_4 PF13717.6 gi|119873390|ref|YP_931397.1| - 0.048 13.6 1.3 7.7 6.5 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|119873390|ref|YP_931397.1| - 0.065 13.4 1.9 0.82 9.9 0.2 2.9 3 0 0 3 3 3 0 C4-type zinc ribbon domain DZR PF12773.7 gi|119873390|ref|YP_931397.1| - 0.099 12.7 0.3 0.17 11.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119873390|ref|YP_931397.1| - 0.12 12.3 3.2 0.29 11.1 3.2 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|119873390|ref|YP_931397.1| - 0.14 11.6 1.6 14 5.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119873390|ref|YP_931397.1| - 0.34 11.1 4.3 6.9 6.9 0.4 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.11 gi|119873390|ref|YP_931397.1| - 0.49 10.1 7.5 0.91 9.2 7.5 1.4 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|119873390|ref|YP_931397.1| - 2.2 8.1 6.6 6 6.7 1.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TrmO PF01980.16 gi|119873391|ref|YP_931398.1| - 9.1e-29 100.1 0.0 1.1e-28 99.8 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O HV_small_capsid PF17086.5 gi|119873391|ref|YP_931398.1| - 0.2 12.0 0.0 0.33 11.3 0.0 1.4 1 0 0 1 1 1 0 Small capsid protein of Herpesviridae DUF1634 PF07843.11 gi|119873392|ref|YP_931399.1| - 9.7e-19 67.3 6.1 1.1e-18 67.1 6.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) HEV_ORF1 PF02444.16 gi|119873392|ref|YP_931399.1| - 0.12 13.0 1.5 0.16 12.5 1.5 1.3 1 0 0 1 1 1 0 Hepatitis E virus ORF-2 (Putative capsid protein) SdpI PF13630.6 gi|119873392|ref|YP_931399.1| - 4.7 7.4 7.4 85 3.4 7.2 2.3 1 1 0 1 1 1 0 SdpI/YhfL protein family Ac76 PF05814.11 gi|119873392|ref|YP_931399.1| - 7.3 6.7 7.4 2.9 7.9 5.0 1.7 2 0 0 2 2 2 0 Orf76 (Ac76) TauE PF01925.19 gi|119873393|ref|YP_931400.1| - 2.2e-46 158.4 34.9 2.7e-46 158.1 34.9 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE AdoMet_Synthase PF01941.19 gi|119873393|ref|YP_931400.1| - 0.13 11.0 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) TMEM141 PF15110.6 gi|119873393|ref|YP_931400.1| - 8 7.1 6.2 4.6 7.9 0.3 2.9 2 1 1 3 3 3 0 TMEM141 protein family CitMHS PF03600.16 gi|119873394|ref|YP_931401.1| - 4.4e-26 91.8 43.8 4.4e-26 91.8 43.8 1.8 1 1 1 2 2 2 2 Citrate transporter Na_sulph_symp PF00939.19 gi|119873394|ref|YP_931401.1| - 1.3e-05 24.5 31.7 0.01 14.9 2.5 4.2 1 1 3 4 4 4 4 Sodium:sulfate symporter transmembrane region UPF0220 PF05255.11 gi|119873394|ref|YP_931401.1| - 0.36 10.4 0.0 0.36 10.4 0.0 3.2 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0220) DUF3796 PF12676.7 gi|119873394|ref|YP_931401.1| - 8.9 6.8 9.4 0.17 12.3 0.5 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3796) Trp_syntA PF00290.20 gi|119873395|ref|YP_931402.1| - 1.6e-19 69.8 0.0 2.1e-10 39.9 0.0 2.0 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.14 gi|119873395|ref|YP_931402.1| - 0.00087 18.5 0.1 0.0012 18.1 0.1 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.17 gi|119873395|ref|YP_931402.1| - 0.0013 18.2 0.0 0.0017 17.8 0.0 1.1 1 0 0 1 1 1 1 PcrB family ThiG PF05690.14 gi|119873395|ref|YP_931402.1| - 0.0035 16.7 0.0 0.0047 16.3 0.0 1.1 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|119873395|ref|YP_931402.1| - 0.012 15.1 0.0 0.016 14.6 0.0 1.2 1 0 0 1 1 1 0 Histidine biosynthesis protein PA PF02225.22 gi|119873395|ref|YP_931402.1| - 0.014 15.4 0.3 1.2 9.2 0.3 2.3 2 0 0 2 2 2 0 PA domain IGPS PF00218.21 gi|119873395|ref|YP_931402.1| - 0.055 12.6 0.0 0.099 11.8 0.0 1.4 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|119873395|ref|YP_931402.1| - 0.073 12.1 0.3 0.1 11.5 0.3 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|119873395|ref|YP_931402.1| - 0.11 11.9 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase KNOX2 PF03791.13 gi|119873395|ref|YP_931402.1| - 0.12 11.9 0.0 0.3 10.6 0.0 1.6 1 0 0 1 1 1 0 KNOX2 domain GATase PF00117.28 gi|119873396|ref|YP_931403.1| - 3.9e-51 173.5 0.0 4.6e-51 173.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|119873396|ref|YP_931403.1| - 1.9e-11 44.1 0.1 4.7e-11 42.9 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|119873397|ref|YP_931404.1| - 1.9e-89 299.7 0.0 2.3e-89 299.4 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|119873397|ref|YP_931404.1| - 0.0032 17.7 0.2 5 7.3 0.1 4.1 4 1 1 5 5 5 1 Anthranilate synthase component I, N terminal region Glycos_transf_3 PF00591.21 gi|119873398|ref|YP_931405.1| - 1.5e-72 244.3 0.1 1.9e-72 243.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|119873398|ref|YP_931405.1| - 4.6e-13 48.8 2.1 7.3e-13 48.2 0.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain PALP PF00291.25 gi|119873399|ref|YP_931406.1| - 1e-47 163.0 0.7 1.2e-47 162.8 0.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF4405 PF14358.6 gi|119873400|ref|YP_931407.1| - 2e-14 53.9 5.6 2.5e-14 53.6 5.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4405) Ni_hydr_CYTB PF01292.20 gi|119873400|ref|YP_931407.1| - 0.0013 18.4 3.9 0.0013 18.3 3.9 1.1 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 gi|119873400|ref|YP_931407.1| - 0.04 13.6 0.9 0.058 13.1 0.9 1.3 1 1 0 1 1 1 0 PepSY-associated TM region PRAI PF00697.22 gi|119873401|ref|YP_931408.1| - 1.1e-23 84.0 0.0 1.3e-23 83.8 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MJ1316 PF04457.12 gi|119873402|ref|YP_931409.1| - 2.7e-06 28.0 0.0 3.1e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain PDDEXK_10 PF07788.11 gi|119873403|ref|YP_931410.1| - 5e-21 74.4 0.0 8.2e-21 73.7 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|119873403|ref|YP_931410.1| - 1.8e-20 72.9 5.2 1.8e-20 72.9 5.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3782) SHE3 PF17078.5 gi|119873403|ref|YP_931410.1| - 0.12 12.1 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Dynein_attach_N PF15867.5 gi|119873403|ref|YP_931410.1| - 0.34 10.9 5.9 0.35 10.9 0.9 2.9 2 1 1 3 3 3 0 Dynein attachment factor N-terminus UDG PF03167.19 gi|119873404|ref|YP_931411.1| - 1e-37 129.5 0.0 1.4e-37 129.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily FHA PF00498.26 gi|119873405|ref|YP_931412.1| - 8.6e-12 45.2 0.0 1.1e-11 44.9 0.0 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|119873405|ref|YP_931412.1| - 6.3e-06 26.4 0.0 8.6e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain Aminotran_3 PF00202.21 gi|119873406|ref|YP_931413.1| - 2.3e-99 332.8 0.0 3.5e-99 332.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|119873406|ref|YP_931413.1| - 0.00075 18.6 0.0 0.0012 17.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Metallophos PF00149.28 gi|119873407|ref|YP_931414.1| - 1.8e-05 25.4 1.3 3.9e-05 24.3 1.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase VKOR PF07884.14 gi|119873408|ref|YP_931415.1| - 1.6e-18 67.1 13.8 1.9e-18 66.9 13.8 1.1 1 0 0 1 1 1 1 Vitamin K epoxide reductase family Radical_SAM PF04055.21 gi|119873409|ref|YP_931416.1| - 1.3e-10 42.0 0.0 1.8e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily AP_endonuc_2 PF01261.24 gi|119873409|ref|YP_931416.1| - 0.0041 16.6 0.0 0.032 13.7 0.0 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1848 PF08902.11 gi|119873409|ref|YP_931416.1| - 0.026 14.3 2.4 2.4 7.8 3.5 2.7 2 1 1 3 3 3 0 Domain of unknown function (DUF1848) DUF3368 PF11848.8 gi|119873409|ref|YP_931416.1| - 0.086 12.6 0.0 12 5.8 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) EST1_DNA_bind PF10373.9 gi|119873412|ref|YP_931419.1| - 0.032 13.7 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Est1 DNA/RNA binding domain DUF2087 PF09860.9 gi|119873412|ref|YP_931419.1| - 0.08 13.1 0.3 0.19 11.9 0.3 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) AbiEi_4 PF13338.6 gi|119873413|ref|YP_931420.1| - 1.6e-05 24.9 0.0 3.7e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_27 PF13463.6 gi|119873413|ref|YP_931420.1| - 2.2e-05 24.8 0.0 3.7e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|119873413|ref|YP_931420.1| - 0.0001 22.4 0.1 0.0002 21.4 0.1 1.5 1 0 0 1 1 1 1 Mrr N-terminal domain MarR_2 PF12802.7 gi|119873413|ref|YP_931420.1| - 0.00012 21.8 0.0 0.00026 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|119873413|ref|YP_931420.1| - 0.00044 20.2 0.3 0.0007 19.5 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|119873413|ref|YP_931420.1| - 0.0015 18.4 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|119873413|ref|YP_931420.1| - 0.0025 17.7 0.1 0.0044 16.9 0.1 1.4 1 0 0 1 1 1 1 MarR family DUF4364 PF14277.6 gi|119873413|ref|YP_931420.1| - 0.018 14.8 0.1 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SMC_Nse1 PF07574.13 gi|119873413|ref|YP_931420.1| - 0.046 13.6 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex DUF4423 PF14394.6 gi|119873413|ref|YP_931420.1| - 0.048 13.4 0.1 0.08 12.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HemN_C PF06969.16 gi|119873413|ref|YP_931420.1| - 0.068 13.3 0.1 0.17 11.9 0.1 1.8 1 0 0 1 1 1 0 HemN C-terminal domain HTH_12 PF08461.10 gi|119873413|ref|YP_931420.1| - 0.088 12.8 0.7 0.19 11.7 0.7 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain PadR PF03551.14 gi|119873413|ref|YP_931420.1| - 0.089 12.8 0.2 0.23 11.5 0.2 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|119873413|ref|YP_931420.1| - 0.14 12.3 0.1 0.5 10.6 0.1 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|119873413|ref|YP_931420.1| - 0.15 12.0 0.2 0.37 10.8 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain RQC PF09382.10 gi|119873413|ref|YP_931420.1| - 0.17 11.7 0.1 0.28 11.0 0.1 1.3 1 0 0 1 1 1 0 RQC domain CRISPR_Cas6 PF10040.9 gi|119873415|ref|YP_931422.1| - 9.9e-06 26.1 0.1 1.5e-05 25.5 0.1 1.3 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Glycophorin_A PF01102.18 gi|119873416|ref|YP_931423.1| - 0.12 12.6 0.1 0.18 12.0 0.1 1.2 1 0 0 1 1 1 0 Glycophorin A DUF4381 PF14316.6 gi|119873416|ref|YP_931423.1| - 4.5 7.5 6.2 13 6.1 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4381) Carb_kinase PF01256.17 gi|119873417|ref|YP_931424.1| - 8.6e-55 185.9 0.3 1.5e-54 185.1 0.3 1.4 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|119873417|ref|YP_931424.1| - 1e-42 146.0 0.1 2.6e-42 144.6 0.1 1.8 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|119873417|ref|YP_931424.1| - 2.8e-09 36.7 0.0 6.3e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|119873417|ref|YP_931424.1| - 0.036 13.4 0.0 0.095 12.1 0.0 1.6 1 1 1 2 2 2 0 Phosphomethylpyrimidine kinase PaREP1 PF05942.11 gi|119873418|ref|YP_931425.1| - 3.5e-35 120.4 6.6 3.5e-35 120.4 6.6 1.3 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|119873418|ref|YP_931425.1| - 0.00064 19.8 3.7 0.004 17.3 3.7 2.1 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.13 gi|119873418|ref|YP_931425.1| - 0.018 15.1 0.3 0.04 14.0 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF357) Ribosomal_S30AE PF02482.19 gi|119873418|ref|YP_931425.1| - 0.044 14.6 0.2 0.079 13.7 0.2 1.4 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein FliS PF02561.14 gi|119873418|ref|YP_931425.1| - 0.076 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Flagellar protein FliS TPR_2 PF07719.17 gi|119873418|ref|YP_931425.1| - 0.7 10.1 7.0 1.8 8.9 0.4 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|119873418|ref|YP_931425.1| - 1.2 9.1 4.5 4.5 7.3 0.4 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|119873418|ref|YP_931425.1| - 4.2 7.2 5.5 1.3 8.8 0.5 2.2 2 0 0 2 2 2 0 TPR repeat DUF5618 PF18498.1 gi|119873419|ref|YP_931426.1| - 3.4e-08 33.7 0.1 4.4e-08 33.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) PaREP1 PF05942.11 gi|119873419|ref|YP_931426.1| - 1e-05 25.4 4.7 2.2e-05 24.3 4.7 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Sigma70_r2 PF04542.14 gi|119873419|ref|YP_931426.1| - 0.047 13.5 1.4 0.4 10.5 0.2 2.5 2 0 0 2 2 2 0 Sigma-70 region 2 PIG-L PF02585.17 gi|119873419|ref|YP_931426.1| - 0.17 12.5 0.1 0.24 12.1 0.1 1.2 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase DUF4065 PF13274.6 gi|119873420|ref|YP_931427.1| - 5.3e-10 40.2 0.0 7.3e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) DUF3860 PF12976.7 gi|119873421|ref|YP_931428.1| - 0.11 12.5 0.1 2.2 8.3 0.1 2.2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3860) AAA_15 PF13175.6 gi|119873423|ref|YP_931430.1| - 6.8e-16 58.9 0.0 6.7e-08 32.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|119873423|ref|YP_931430.1| - 6.2e-14 52.5 0.0 5.2e-10 39.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system ABC_tran PF00005.27 gi|119873423|ref|YP_931430.1| - 0.16 12.5 0.0 0.5 10.9 0.0 1.7 2 0 0 2 2 2 0 ABC transporter McrBC PF10117.9 gi|119873425|ref|YP_931432.1| - 5.4e-05 22.5 0.0 0.00044 19.5 0.0 2.0 2 0 0 2 2 2 1 McrBC 5-methylcytosine restriction system component Hjc PF01870.18 gi|119873425|ref|YP_931432.1| - 0.11 12.5 0.0 0.31 11.1 0.0 1.7 2 0 0 2 2 2 0 Archaeal holliday junction resolvase (hjc) AAA_5 PF07728.14 gi|119873426|ref|YP_931433.1| - 2.8e-14 53.3 0.0 4.4e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|119873426|ref|YP_931433.1| - 0.0018 17.9 0.1 0.0041 16.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|119873426|ref|YP_931433.1| - 0.036 13.6 0.1 0.068 12.7 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_16 PF13191.6 gi|119873426|ref|YP_931433.1| - 0.097 13.1 3.1 0.19 12.1 0.4 2.6 3 0 0 3 3 3 0 AAA ATPase domain AAA PF00004.29 gi|119873426|ref|YP_931433.1| - 0.22 12.0 0.0 0.46 10.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|119873428|ref|YP_931435.1| - 4.3e-16 59.6 0.1 1.1e-09 38.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|119873428|ref|YP_931435.1| - 7.7e-11 42.3 0.0 0.00024 20.9 0.0 2.4 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|119873428|ref|YP_931435.1| - 0.00025 20.6 0.0 0.00043 19.8 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873428|ref|YP_931435.1| - 0.00079 19.1 0.0 0.0014 18.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2813 PF11398.8 gi|119873428|ref|YP_931435.1| - 0.036 13.3 0.0 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) DUF2250 PF10007.9 gi|119873429|ref|YP_931436.1| - 0.043 13.9 0.1 0.069 13.3 0.1 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) BLACT_WH PF17778.1 gi|119873429|ref|YP_931436.1| - 0.15 12.0 0.1 0.15 12.0 0.1 1.6 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain HTH_27 PF13463.6 gi|119873429|ref|YP_931436.1| - 0.17 12.4 0.0 0.23 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Nitro_FeMo-Co PF02579.17 gi|119873430|ref|YP_931437.1| - 3.2e-20 72.2 0.0 4.2e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor ATP_bind_1 PF03029.17 gi|119873431|ref|YP_931438.1| - 3e-48 164.7 0.0 3.6e-48 164.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|119873431|ref|YP_931438.1| - 1.1e-06 29.1 0.3 1.1e-05 25.8 0.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|119873431|ref|YP_931438.1| - 5.2e-06 26.5 0.0 0.00034 20.6 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|119873431|ref|YP_931438.1| - 1.9e-05 24.4 0.0 0.0009 18.9 0.0 2.7 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain CbiA PF01656.23 gi|119873431|ref|YP_931438.1| - 0.00042 20.4 0.0 0.00053 20.0 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.27 gi|119873431|ref|YP_931438.1| - 0.00048 19.7 0.0 0.25 10.9 0.0 2.8 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|119873431|ref|YP_931438.1| - 0.001 19.3 0.1 0.003 17.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|119873431|ref|YP_931438.1| - 0.0022 17.7 0.0 0.0038 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|119873431|ref|YP_931438.1| - 0.0032 17.5 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|119873431|ref|YP_931438.1| - 0.0033 17.3 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|119873431|ref|YP_931438.1| - 0.0041 16.9 0.0 0.008 15.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein PduV-EutP PF10662.9 gi|119873431|ref|YP_931438.1| - 0.0051 16.6 0.0 5.2 6.8 0.0 3.6 4 0 0 4 4 4 1 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|119873431|ref|YP_931438.1| - 0.0082 15.7 0.1 0.25 10.9 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|119873431|ref|YP_931438.1| - 0.01 15.7 0.1 8.2 6.3 0.0 3.1 3 1 0 3 3 3 0 RsgA GTPase AAA_7 PF12775.7 gi|119873431|ref|YP_931438.1| - 0.014 14.9 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region KTI12 PF08433.10 gi|119873431|ref|YP_931438.1| - 0.015 14.7 0.0 0.068 12.6 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA PF00004.29 gi|119873431|ref|YP_931438.1| - 0.017 15.6 0.0 0.37 11.2 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|119873431|ref|YP_931438.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|119873431|ref|YP_931438.1| - 0.035 14.6 0.0 0.08 13.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|119873431|ref|YP_931438.1| - 0.038 13.9 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|119873431|ref|YP_931438.1| - 0.041 13.9 0.0 0.083 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|119873431|ref|YP_931438.1| - 0.047 13.6 0.0 0.17 11.8 0.0 2.1 2 1 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|119873431|ref|YP_931438.1| - 0.052 13.7 0.0 0.24 11.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|119873431|ref|YP_931438.1| - 0.071 12.1 0.0 2.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NB-ARC PF00931.22 gi|119873431|ref|YP_931438.1| - 0.13 11.5 0.0 0.26 10.4 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.14 gi|119873431|ref|YP_931438.1| - 0.17 11.8 0.0 0.38 10.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B CLP1_P PF16575.5 gi|119873431|ref|YP_931438.1| - 0.18 11.6 0.0 0.43 10.4 0.0 1.6 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_helicase PF00910.22 gi|119873431|ref|YP_931438.1| - 0.23 11.9 0.0 0.38 11.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ADH_N PF08240.12 gi|119873432|ref|YP_931439.1| - 1.3e-23 82.9 0.1 2.1e-23 82.2 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|119873432|ref|YP_931439.1| - 4.8e-13 49.2 0.0 7.6e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|119873432|ref|YP_931439.1| - 2.9e-11 43.3 0.0 4e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|119873432|ref|YP_931439.1| - 3.2e-05 25.0 0.0 7.4e-05 23.8 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|119873432|ref|YP_931439.1| - 0.00024 21.2 0.0 0.00039 20.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ADH_N_assoc PF13823.6 gi|119873432|ref|YP_931439.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Alcohol dehydrogenase GroES-associated 2-Hacid_dh_C PF02826.19 gi|119873432|ref|YP_931439.1| - 0.054 12.9 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AAA_21 PF13304.6 gi|119873433|ref|YP_931440.1| - 3.4e-22 79.6 0.0 1e-11 45.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|119873433|ref|YP_931440.1| - 2.3e-11 44.6 0.0 3.5e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119873433|ref|YP_931440.1| - 4.3e-11 42.7 0.0 7e-11 42.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119873433|ref|YP_931440.1| - 5.6e-11 42.8 0.0 3.5e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain DUF2813 PF11398.8 gi|119873433|ref|YP_931440.1| - 9.1e-05 21.9 0.0 0.18 11.1 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_29 PF13555.6 gi|119873433|ref|YP_931440.1| - 0.0013 18.4 0.0 0.0024 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|119873433|ref|YP_931440.1| - 0.0024 18.2 0.0 0.73 10.1 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|119873433|ref|YP_931440.1| - 0.0053 17.3 0.0 0.074 13.6 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_27 PF13514.6 gi|119873433|ref|YP_931440.1| - 0.0082 15.7 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|119873433|ref|YP_931440.1| - 0.036 14.0 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_PrkA PF08298.11 gi|119873433|ref|YP_931440.1| - 0.092 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 PrkA AAA domain Peptidase_M16 PF00675.20 gi|119873436|ref|YP_931443.1| - 5.1e-18 65.5 0.0 7.7e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|119873436|ref|YP_931443.1| - 3.2e-07 30.6 0.0 1.5e-06 28.3 0.0 2.0 2 0 0 2 2 2 1 Peptidase M16 inactive domain TPR_2 PF07719.17 gi|119873436|ref|YP_931443.1| - 0.25 11.6 6.2 4.4 7.6 0.3 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|119873436|ref|YP_931443.1| - 0.42 11.6 8.9 3.9 8.5 0.2 4.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_12 PF13424.6 gi|119873436|ref|YP_931443.1| - 5.8 7.3 5.9 11 6.4 0.1 3.1 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_16 PF13432.6 gi|119873436|ref|YP_931443.1| - 6.7 7.4 9.1 3.3 8.5 0.3 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat Peripla_BP_2 PF01497.18 gi|119873437|ref|YP_931444.1| - 5.4e-21 75.2 0.0 5.3e-20 72.0 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein Sugarporin_N PF11471.8 gi|119873437|ref|YP_931444.1| - 0.11 12.5 2.8 6.4 6.8 0.2 3.2 2 1 1 3 3 3 0 Maltoporin periplasmic N-terminal extension FecCD PF01032.18 gi|119873438|ref|YP_931445.1| - 7.2e-57 192.8 33.1 8.6e-57 192.5 33.1 1.0 1 0 0 1 1 1 1 FecCD transport family DUF983 PF06170.12 gi|119873438|ref|YP_931445.1| - 6.3 7.3 8.6 6.8 7.2 0.0 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF983) ABC_tran PF00005.27 gi|119873439|ref|YP_931446.1| - 1.1e-20 74.6 0.0 3.8e-20 72.8 0.0 1.7 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873439|ref|YP_931446.1| - 8.2e-15 55.4 0.0 1.2e-06 28.6 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873439|ref|YP_931446.1| - 1.6e-07 31.0 0.0 0.00088 18.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|119873439|ref|YP_931446.1| - 4.2e-06 26.7 0.0 0.00021 21.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|119873439|ref|YP_931446.1| - 8.2e-06 26.5 0.0 1.2e-05 25.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|119873439|ref|YP_931446.1| - 8.3e-05 22.8 0.1 0.00038 20.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|119873439|ref|YP_931446.1| - 0.00027 20.6 0.1 0.00049 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873439|ref|YP_931446.1| - 0.0003 21.2 0.2 0.00085 19.7 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain SbcCD_C PF13558.6 gi|119873439|ref|YP_931446.1| - 0.002 18.3 0.0 0.021 15.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NB-ARC PF00931.22 gi|119873439|ref|YP_931446.1| - 0.0033 16.6 0.1 0.96 8.6 0.0 2.0 2 0 0 2 2 2 2 NB-ARC domain ABC_ATPase PF09818.9 gi|119873439|ref|YP_931446.1| - 0.0045 15.8 0.1 0.15 10.8 0.2 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|119873439|ref|YP_931446.1| - 0.0051 16.6 0.2 0.0074 16.0 0.2 1.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|119873439|ref|YP_931446.1| - 0.0072 16.3 0.0 0.22 11.4 0.2 2.1 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.6 gi|119873439|ref|YP_931446.1| - 0.0078 16.5 0.2 0.016 15.4 0.2 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|119873439|ref|YP_931446.1| - 0.011 15.7 0.4 0.016 15.1 0.4 1.2 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|119873439|ref|YP_931446.1| - 0.02 15.3 0.7 0.067 13.6 0.2 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|119873439|ref|YP_931446.1| - 0.029 14.9 0.0 0.057 14.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119873439|ref|YP_931446.1| - 0.039 13.6 0.2 0.06 13.0 0.2 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|119873439|ref|YP_931446.1| - 0.042 13.4 0.5 0.064 12.8 0.5 1.2 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|119873439|ref|YP_931446.1| - 0.043 14.1 0.4 0.17 12.1 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|119873439|ref|YP_931446.1| - 0.063 13.3 0.2 0.092 12.7 0.2 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RsgA_GTPase PF03193.16 gi|119873439|ref|YP_931446.1| - 0.1 12.5 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase MobB PF03205.14 gi|119873439|ref|YP_931446.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Exo_endo_phos PF03372.23 gi|119873439|ref|YP_931446.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family AAA_19 PF13245.6 gi|119873439|ref|YP_931446.1| - 0.15 12.4 0.2 0.32 11.3 0.1 1.5 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|119873439|ref|YP_931446.1| - 0.16 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|119873439|ref|YP_931446.1| - 0.18 10.8 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|119873439|ref|YP_931446.1| - 0.2 11.4 0.1 0.36 10.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|119873439|ref|YP_931446.1| - 0.23 8.9 0.1 0.3 8.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Rad17 PF03215.15 gi|119873439|ref|YP_931446.1| - 0.26 11.2 0.0 0.58 10.0 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain GTP_EFTU PF00009.27 gi|119873440|ref|YP_931447.1| - 2.1e-58 197.1 0.0 3.1e-58 196.5 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|119873440|ref|YP_931447.1| - 3.9e-30 104.1 0.0 1.8e-29 102.0 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|119873440|ref|YP_931447.1| - 9.4e-23 80.1 0.1 2e-22 79.1 0.1 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|119873440|ref|YP_931447.1| - 7e-20 70.9 0.0 1.9e-19 69.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|119873440|ref|YP_931447.1| - 7.5e-16 58.3 0.3 1.7e-15 57.2 0.3 1.6 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|119873440|ref|YP_931447.1| - 0.021 14.9 0.0 0.048 13.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RF3_C PF16658.5 gi|119873440|ref|YP_931447.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SBP_bac_6 PF13343.6 gi|119873441|ref|YP_931448.1| - 7.1e-21 74.7 0.0 1.2e-20 74.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|119873441|ref|YP_931448.1| - 5.6e-17 62.5 0.0 8.4e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|119873441|ref|YP_931448.1| - 1e-13 51.6 0.0 3.3e-13 49.9 0.0 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|119873441|ref|YP_931448.1| - 3.4e-12 47.0 0.2 5.8e-12 46.2 0.2 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|119873443|ref|YP_931450.1| - 7.2e-36 123.7 0.0 9.8e-36 123.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873443|ref|YP_931450.1| - 2.5e-13 50.5 0.2 3.1e-07 30.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|119873443|ref|YP_931450.1| - 8.6e-07 28.6 0.0 0.022 14.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873443|ref|YP_931450.1| - 0.00014 21.6 0.0 0.00023 20.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|119873443|ref|YP_931450.1| - 0.00023 21.6 0.1 0.00046 20.6 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|119873443|ref|YP_931450.1| - 0.00035 21.1 0.1 0.00053 20.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|119873443|ref|YP_931450.1| - 0.0016 18.7 0.2 0.012 15.8 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|119873443|ref|YP_931450.1| - 0.0049 17.1 0.1 0.079 13.2 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|119873443|ref|YP_931450.1| - 0.006 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|119873443|ref|YP_931450.1| - 0.017 15.5 0.0 0.076 13.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|119873443|ref|YP_931450.1| - 0.018 14.7 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Cytidylate_kin PF02224.18 gi|119873443|ref|YP_931450.1| - 0.048 13.4 0.1 0.075 12.8 0.1 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_24 PF13479.6 gi|119873443|ref|YP_931450.1| - 0.056 13.2 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|119873443|ref|YP_931450.1| - 0.065 13.3 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|119873443|ref|YP_931450.1| - 0.079 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|119873443|ref|YP_931450.1| - 0.084 12.8 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|119873443|ref|YP_931450.1| - 0.087 13.0 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|119873443|ref|YP_931450.1| - 0.088 12.8 0.0 0.22 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|119873443|ref|YP_931450.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|119873443|ref|YP_931450.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|119873443|ref|YP_931450.1| - 0.2 12.2 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|119873443|ref|YP_931450.1| - 0.24 11.5 0.0 0.41 10.7 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain Rad17 PF03215.15 gi|119873443|ref|YP_931450.1| - 0.28 11.1 0.0 0.43 10.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain MerR_1 PF13411.6 gi|119873444|ref|YP_931451.1| - 0.039 14.1 0.2 15 5.8 0.1 3.4 3 1 0 3 3 3 0 MerR HTH family regulatory protein Fer4_17 PF13534.6 gi|119873445|ref|YP_931452.1| - 8.9e-10 39.0 5.8 8.9e-10 39.0 5.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119873445|ref|YP_931452.1| - 9.8e-10 38.7 6.8 9.9e-10 38.7 5.0 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119873445|ref|YP_931452.1| - 8.6e-07 29.1 0.9 0.017 15.3 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873445|ref|YP_931452.1| - 7.9e-06 26.4 6.6 7.9e-06 26.4 6.6 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119873445|ref|YP_931452.1| - 1.4e-05 24.7 11.3 0.023 14.5 0.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119873445|ref|YP_931452.1| - 1.4e-05 25.1 18.9 7.6e-05 22.8 9.1 2.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119873445|ref|YP_931452.1| - 3e-05 24.1 12.2 8.4e-05 22.6 10.6 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119873445|ref|YP_931452.1| - 0.00012 22.2 4.1 0.048 13.8 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119873445|ref|YP_931452.1| - 0.0025 17.8 10.9 0.38 11.0 0.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873445|ref|YP_931452.1| - 0.0026 17.8 13.6 0.027 14.5 4.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain CCG PF02754.16 gi|119873445|ref|YP_931452.1| - 0.0026 17.9 0.0 0.0088 16.2 0.0 2.0 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_16 PF13484.6 gi|119873445|ref|YP_931452.1| - 0.015 16.2 10.8 0.015 16.2 10.8 2.3 2 1 0 2 2 1 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|119873445|ref|YP_931452.1| - 0.022 15.2 17.2 0.042 14.4 0.8 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|119873445|ref|YP_931452.1| - 0.045 14.7 15.4 0.67 11.0 3.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|119873445|ref|YP_931452.1| - 0.091 13.6 6.3 6.4 7.7 0.2 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119873445|ref|YP_931452.1| - 8.4 7.2 7.1 7.3 7.4 0.1 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain DsrC PF04358.13 gi|119873446|ref|YP_931453.1| - 6.7e-12 45.9 0.0 7.6e-12 45.7 0.0 1.1 1 0 0 1 1 1 1 DsrC like protein Acyl-CoA_dh_1 PF00441.24 gi|119873447|ref|YP_931454.1| - 3.3e-39 134.5 0.2 5e-39 133.9 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|119873447|ref|YP_931454.1| - 9.3e-29 100.4 0.1 1.8e-28 99.4 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|119873447|ref|YP_931454.1| - 2e-21 76.0 0.1 3.5e-21 75.2 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|119873447|ref|YP_931454.1| - 1.8e-18 67.1 0.1 3.7e-18 66.1 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Amidohydro_1 PF01979.20 gi|119873448|ref|YP_931455.1| - 1.6e-11 44.1 0.0 7.6e-11 41.9 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family ATPase PF06745.13 gi|119873449|ref|YP_931456.1| - 1.5e-15 57.2 0.1 9.4e-14 51.3 0.1 2.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|119873449|ref|YP_931456.1| - 2.1e-07 30.7 0.0 3.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|119873449|ref|YP_931456.1| - 2.1e-07 29.9 0.1 1.7e-05 23.6 0.1 2.2 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA PF00004.29 gi|119873449|ref|YP_931456.1| - 1.8e-05 25.2 0.0 0.00017 22.0 0.0 2.2 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|119873449|ref|YP_931456.1| - 0.00021 21.1 0.0 0.0006 19.6 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|119873449|ref|YP_931456.1| - 0.00087 18.7 0.0 0.0019 17.6 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|119873449|ref|YP_931456.1| - 0.002 18.4 0.0 0.0039 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|119873449|ref|YP_931456.1| - 0.0034 17.8 0.0 0.0075 16.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|119873449|ref|YP_931456.1| - 0.0039 17.2 0.0 0.019 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF2075 PF09848.9 gi|119873449|ref|YP_931456.1| - 0.0044 16.3 0.1 0.071 12.3 0.0 1.9 1 1 1 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.6 gi|119873449|ref|YP_931456.1| - 0.0064 16.2 0.0 0.035 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|119873449|ref|YP_931456.1| - 0.018 15.4 0.0 0.06 13.7 0.0 1.9 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|119873449|ref|YP_931456.1| - 0.027 14.2 0.0 0.046 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119873449|ref|YP_931456.1| - 0.034 14.1 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain PhoH PF02562.16 gi|119873449|ref|YP_931456.1| - 0.041 13.3 0.0 0.076 12.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein RuvB_N PF05496.12 gi|119873449|ref|YP_931456.1| - 0.056 13.2 0.1 0.64 9.8 0.0 2.6 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|119873449|ref|YP_931456.1| - 0.067 13.1 0.0 0.18 11.7 0.0 1.9 1 1 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|119873449|ref|YP_931456.1| - 0.074 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.6 gi|119873449|ref|YP_931456.1| - 0.075 13.1 0.0 0.61 10.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|119873449|ref|YP_931456.1| - 0.092 13.3 0.0 0.16 12.5 0.0 1.5 1 1 0 1 1 1 0 ABC transporter AAA_11 PF13086.6 gi|119873449|ref|YP_931456.1| - 0.092 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|119873449|ref|YP_931456.1| - 0.092 12.8 0.0 0.16 12.0 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|119873449|ref|YP_931456.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|119873449|ref|YP_931456.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.14 gi|119873449|ref|YP_931456.1| - 0.2 11.5 0.4 3.1 7.7 0.0 2.6 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|119873449|ref|YP_931456.1| - 0.21 11.9 0.0 0.99 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Alpha-amylase PF00128.24 gi|119873450|ref|YP_931457.1| - 6.9e-28 98.2 0.0 1.9e-19 70.4 0.0 2.1 2 0 0 2 2 2 2 Alpha amylase, catalytic domain QueF PF14489.6 gi|119873451|ref|YP_931458.1| - 3.4e-08 33.5 0.0 4.6e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|119873451|ref|YP_931458.1| - 3.3e-06 26.7 0.1 3.7e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I IF3_C PF00707.22 gi|119873451|ref|YP_931458.1| - 0.0053 16.7 0.0 0.0076 16.2 0.0 1.3 1 0 0 1 1 1 1 Translation initiation factor IF-3, C-terminal domain ABC2_membrane PF01061.24 gi|119873452|ref|YP_931459.1| - 5.4e-06 26.0 18.5 9.7e-06 25.1 18.5 1.3 1 0 0 1 1 1 1 ABC-2 type transporter DUF1189 PF06691.11 gi|119873452|ref|YP_931459.1| - 1.1 8.8 3.1 1.9 8.0 3.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) DUF5480 PF17576.2 gi|119873452|ref|YP_931459.1| - 2.5 8.1 9.0 0.15 12.0 0.8 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5480) ABC_tran PF00005.27 gi|119873453|ref|YP_931460.1| - 1.7e-27 96.6 0.0 2.2e-27 96.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873453|ref|YP_931460.1| - 2.6e-13 50.5 0.0 2.8e-08 34.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|119873453|ref|YP_931460.1| - 0.00048 20.5 0.1 0.0007 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|119873453|ref|YP_931460.1| - 0.0022 18.3 0.6 0.027 14.7 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|119873453|ref|YP_931460.1| - 0.0024 18.4 0.0 0.0036 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|119873453|ref|YP_931460.1| - 0.0034 16.8 0.0 2.1 7.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|119873453|ref|YP_931460.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|119873453|ref|YP_931460.1| - 0.012 16.0 0.0 0.043 14.3 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|119873453|ref|YP_931460.1| - 0.017 15.1 0.0 0.037 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|119873453|ref|YP_931460.1| - 0.019 15.2 0.0 0.04 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|119873453|ref|YP_931460.1| - 0.021 14.7 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain SRP54 PF00448.22 gi|119873453|ref|YP_931460.1| - 0.029 14.0 0.1 0.05 13.2 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|119873453|ref|YP_931460.1| - 0.034 14.3 0.2 0.059 13.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|119873453|ref|YP_931460.1| - 0.036 13.8 0.0 0.074 12.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|119873453|ref|YP_931460.1| - 0.039 13.7 1.0 0.055 13.2 0.6 1.7 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|119873453|ref|YP_931460.1| - 0.039 12.9 0.2 0.066 12.2 0.2 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB HTH_11 PF08279.12 gi|119873453|ref|YP_931460.1| - 0.082 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain Rad17 PF03215.15 gi|119873453|ref|YP_931460.1| - 0.086 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DUF87 PF01935.17 gi|119873453|ref|YP_931460.1| - 0.091 12.8 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Helicase HerA, central domain SbcCD_C PF13558.6 gi|119873453|ref|YP_931460.1| - 0.096 12.9 0.0 2 8.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Roc PF08477.13 gi|119873453|ref|YP_931460.1| - 0.19 12.0 0.0 0.63 10.3 0.0 1.8 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_13 PF13166.6 gi|119873453|ref|YP_931460.1| - 0.25 10.0 0.0 0.34 9.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|119873453|ref|YP_931460.1| - 0.36 10.4 3.0 3.3 7.3 3.0 2.3 1 1 0 1 1 1 0 AAA domain NAD_kinase PF01513.21 gi|119873454|ref|YP_931461.1| - 3.6e-20 72.4 0.2 1.3e-19 70.6 0.2 1.7 1 1 0 1 1 1 1 ATP-NAD kinase HTH_24 PF13412.6 gi|119873454|ref|YP_931461.1| - 1.5e-07 30.8 0.8 2.9e-06 26.7 0.1 2.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|119873454|ref|YP_931461.1| - 2.6e-07 30.4 0.8 8.6e-07 28.8 0.2 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|119873454|ref|YP_931461.1| - 1.6e-06 27.9 0.0 1.7e-05 24.6 0.0 2.3 2 1 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|119873454|ref|YP_931461.1| - 3.1e-06 27.1 0.6 2.6e-05 24.2 0.1 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|119873454|ref|YP_931461.1| - 3.8e-06 26.7 0.0 7.8e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|119873454|ref|YP_931461.1| - 0.0001 22.5 0.1 0.00025 21.3 0.1 1.6 1 0 0 1 1 1 1 Transcriptional regulator TrmB PF01978.19 gi|119873454|ref|YP_931461.1| - 0.00035 20.4 0.1 0.0009 19.1 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|119873454|ref|YP_931461.1| - 0.00039 20.2 0.2 0.0029 17.4 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|119873454|ref|YP_931461.1| - 0.00058 19.9 0.0 0.0017 18.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|119873454|ref|YP_931461.1| - 0.00086 19.2 0.1 0.0029 17.5 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|119873454|ref|YP_931461.1| - 0.0013 18.7 0.0 0.0028 17.6 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|119873454|ref|YP_931461.1| - 0.0015 18.1 0.3 0.0039 16.8 0.3 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family FaeA PF04703.12 gi|119873454|ref|YP_931461.1| - 0.0029 17.9 0.0 0.0069 16.7 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_27 PF13463.6 gi|119873454|ref|YP_931461.1| - 0.0043 17.5 0.0 0.012 16.0 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|119873454|ref|YP_931461.1| - 0.0057 16.6 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_8 PF02954.19 gi|119873454|ref|YP_931461.1| - 0.0075 16.0 0.0 0.12 12.2 0.1 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_36 PF13730.6 gi|119873454|ref|YP_931461.1| - 0.0077 16.2 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_42 PF06224.12 gi|119873454|ref|YP_931461.1| - 0.0083 15.7 0.0 0.0096 15.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|119873454|ref|YP_931461.1| - 0.01 15.6 0.0 0.028 14.2 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|119873454|ref|YP_931461.1| - 0.013 15.2 0.1 0.04 13.6 0.1 1.8 2 0 0 2 2 1 0 Sigma-70, region 4 DUF2336 PF10098.9 gi|119873454|ref|YP_931461.1| - 0.019 14.4 0.1 0.031 13.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein conserved in bacteria (DUF2336) MerR PF00376.23 gi|119873454|ref|YP_931461.1| - 0.022 14.5 0.0 0.078 12.8 0.0 1.9 2 0 0 2 2 1 0 MerR family regulatory protein LexA_DNA_bind PF01726.16 gi|119873454|ref|YP_931461.1| - 0.024 14.4 0.1 0.15 11.9 0.1 2.4 2 0 0 2 2 2 0 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|119873454|ref|YP_931461.1| - 0.03 14.5 0.0 0.098 12.9 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|119873454|ref|YP_931461.1| - 0.036 13.9 3.7 0.13 12.1 0.3 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain PaaX PF07848.12 gi|119873454|ref|YP_931461.1| - 0.044 14.0 0.1 0.13 12.5 0.0 1.9 2 0 0 2 2 1 0 PaaX-like protein HTH_DeoR PF08220.12 gi|119873454|ref|YP_931461.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain SMC_ScpB PF04079.16 gi|119873454|ref|YP_931461.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB AbiEi_4 PF13338.6 gi|119873454|ref|YP_931461.1| - 0.16 12.2 2.4 0.32 11.2 0.3 2.6 2 1 1 3 3 2 0 Transcriptional regulator, AbiEi antitoxin MFS_1 PF07690.16 gi|119873455|ref|YP_931462.1| - 5.6e-42 143.9 40.9 9.4e-42 143.2 40.9 1.4 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|119873455|ref|YP_931462.1| - 1.2e-28 100.2 16.3 2.7e-21 76.0 3.0 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|119873455|ref|YP_931462.1| - 3.6e-08 33.1 28.7 4.6e-08 32.8 28.7 1.1 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB DUF3017 PF11222.8 gi|119873455|ref|YP_931462.1| - 0.00092 19.4 2.9 0.00092 19.4 2.9 3.5 2 1 1 3 3 3 1 Protein of unknown function (DUF3017) DUF2644 PF10841.8 gi|119873455|ref|YP_931462.1| - 0.81 9.9 4.5 0.5 10.6 1.1 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2644) Sugar_tr PF00083.24 gi|119873456|ref|YP_931463.1| - 5.7e-25 88.1 19.5 1.9e-24 86.4 19.5 1.7 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|119873456|ref|YP_931463.1| - 1e-19 70.7 46.7 1e-19 70.7 46.7 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily TENA_THI-4 PF03070.16 gi|119873457|ref|YP_931464.1| - 1.6e-42 145.7 0.2 2e-42 145.4 0.2 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|119873458|ref|YP_931465.1| - 1.8e-09 37.7 0.1 2.5e-09 37.2 0.1 1.2 1 0 0 1 1 1 1 TENA/THI-4/PQQC family DRTGG PF07085.12 gi|119873458|ref|YP_931465.1| - 0.19 11.5 0.0 0.28 11.0 0.0 1.2 1 0 0 1 1 1 0 DRTGG domain PDDEXK_10 PF07788.11 gi|119873459|ref|YP_931466.1| - 1e-27 95.8 0.2 3.1e-27 94.3 0.2 1.9 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|119873459|ref|YP_931466.1| - 1.3e-22 79.7 1.5 1.3e-22 79.7 1.5 4.7 2 2 0 3 3 2 1 Protein of unknown function (DUF3782) ScsC_N PF18312.1 gi|119873459|ref|YP_931466.1| - 0.00014 21.5 3.6 0.0041 16.9 1.6 2.9 2 0 0 2 2 2 1 Copper resistance protein ScsC N-terminal domain DUF2730 PF10805.8 gi|119873459|ref|YP_931466.1| - 0.0009 19.3 17.5 0.011 15.8 5.1 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) Cucumopine_C PF18631.1 gi|119873459|ref|YP_931466.1| - 0.0016 18.4 5.1 0.015 15.2 0.1 3.4 1 1 1 3 3 3 1 Cucumopine synthase C-terminal helical bundle domain Alpha_Helical PF18489.1 gi|119873459|ref|YP_931466.1| - 0.025 14.7 7.6 0.73 10.0 1.0 2.5 1 1 0 2 2 2 0 Alpha helical domain CopK PF11525.8 gi|119873459|ref|YP_931466.1| - 0.037 13.6 6.8 2.3 7.9 0.5 3.9 3 1 0 4 4 4 0 Copper resistance protein K CCDC84 PF14968.6 gi|119873459|ref|YP_931466.1| - 0.044 13.4 1.7 0.069 12.8 1.7 1.3 1 0 0 1 1 1 0 Coiled coil protein 84 Arteri_nucleo PF01481.16 gi|119873459|ref|YP_931466.1| - 0.43 10.9 4.0 8.5 6.7 0.2 3.1 1 1 3 4 4 4 0 Arterivirus nucleocapsid protein U62_UL91 PF17442.2 gi|119873459|ref|YP_931466.1| - 0.51 10.4 4.2 59 3.7 0.1 4.8 3 2 3 7 7 7 0 Functional domain of U62 and UL91 proteins DUF2048 PF09752.9 gi|119873459|ref|YP_931466.1| - 0.52 9.4 5.8 0.47 9.5 4.0 1.9 2 1 0 2 2 2 0 Abhydrolase domain containing 18 DUF3037 PF11236.8 gi|119873459|ref|YP_931466.1| - 0.71 10.3 11.1 4.1 7.8 1.6 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3037) GPHR_N PF12537.8 gi|119873459|ref|YP_931466.1| - 0.82 9.8 8.7 13 6.0 2.2 4.2 2 2 1 3 3 3 0 The Golgi pH Regulator (GPHR) Family N-terminal CorA PF01544.18 gi|119873459|ref|YP_931466.1| - 2.6 7.3 15.9 1.2 8.4 10.0 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein PCRF PF03462.18 gi|119873459|ref|YP_931466.1| - 2.7 7.8 20.8 0.35 10.7 4.8 2.2 1 1 1 2 2 2 0 PCRF domain DUF1664 PF07889.12 gi|119873459|ref|YP_931466.1| - 3.8 7.6 15.2 1.4 8.9 4.8 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) VSG_B PF13206.6 gi|119873459|ref|YP_931466.1| - 5.7 6.1 11.0 8.7 5.5 11.0 1.2 1 0 0 1 1 1 0 Trypanosomal VSG domain Syntaxin_2 PF14523.6 gi|119873459|ref|YP_931466.1| - 7.5 7.0 8.9 40 4.7 0.1 3.5 1 1 2 3 3 3 0 Syntaxin-like protein AAA_13 PF13166.6 gi|119873459|ref|YP_931466.1| - 7.7 5.0 12.4 11 4.4 12.4 1.3 1 0 0 1 1 1 0 AAA domain PDDEXK_10 PF07788.11 gi|119873460|ref|YP_931467.1| - 3e-33 113.6 1.3 9.7e-33 111.9 1.3 2.0 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|119873460|ref|YP_931467.1| - 9.4e-28 96.2 1.7 9.4e-28 96.2 1.7 5.3 3 2 0 3 3 2 1 Protein of unknown function (DUF3782) DUF2730 PF10805.8 gi|119873460|ref|YP_931467.1| - 4.3e-06 26.8 23.7 0.0095 16.0 2.2 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) ScsC_N PF18312.1 gi|119873460|ref|YP_931467.1| - 7.6e-05 22.4 3.2 0.0027 17.5 1.3 3.1 2 0 0 2 2 2 1 Copper resistance protein ScsC N-terminal domain Alpha_Helical PF18489.1 gi|119873460|ref|YP_931467.1| - 0.047 13.9 7.8 0.85 9.8 1.1 2.8 1 1 0 2 2 2 0 Alpha helical domain CCDC84 PF14968.6 gi|119873460|ref|YP_931467.1| - 0.051 13.2 2.9 0.078 12.6 2.9 1.2 1 0 0 1 1 1 0 Coiled coil protein 84 CopK PF11525.8 gi|119873460|ref|YP_931467.1| - 0.062 12.9 6.2 2.5 7.8 0.5 3.5 2 1 0 3 3 3 0 Copper resistance protein K DUF3158 PF11358.8 gi|119873460|ref|YP_931467.1| - 0.065 13.0 9.5 5.7 6.7 0.6 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF3158) DUF1664 PF07889.12 gi|119873460|ref|YP_931467.1| - 0.19 11.8 17.6 1.3 9.1 0.7 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF2048 PF09752.9 gi|119873460|ref|YP_931467.1| - 0.38 9.8 5.0 0.54 9.3 3.9 1.8 1 1 1 2 2 2 0 Abhydrolase domain containing 18 DUF3037 PF11236.8 gi|119873460|ref|YP_931467.1| - 0.73 10.3 13.3 5.4 7.5 1.9 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3037) Arteri_nucleo PF01481.16 gi|119873460|ref|YP_931467.1| - 0.77 10.1 4.9 9.6 6.5 0.2 3.3 1 1 3 4 4 4 0 Arterivirus nucleocapsid protein GPHR_N PF12537.8 gi|119873460|ref|YP_931467.1| - 3.1 8.0 11.5 16 5.7 2.3 4.7 3 2 1 4 4 4 0 The Golgi pH Regulator (GPHR) Family N-terminal P4Ha_N PF08336.11 gi|119873460|ref|YP_931467.1| - 4.8 7.2 13.7 0.4 10.7 3.2 2.9 1 1 2 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region CorA PF01544.18 gi|119873460|ref|YP_931467.1| - 8.5 5.6 22.7 0.82 8.9 9.0 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF4806 PF16064.5 gi|119873460|ref|YP_931467.1| - 9 6.7 17.4 24 5.3 0.3 5.4 2 1 4 6 6 6 0 Domain of unknown function (DUF4806) OrfB_Zn_ribbon PF07282.11 gi|119873461|ref|YP_931468.1| - 1.5e-11 44.0 0.1 2.5e-11 43.3 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|119873461|ref|YP_931468.1| - 0.064 13.6 0.1 0.11 12.9 0.1 1.3 1 0 0 1 1 1 0 C1 domain TF_Zn_Ribbon PF08271.12 gi|119873461|ref|YP_931468.1| - 0.11 12.0 1.3 0.18 11.3 0.5 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding 2-Hacid_dh_C PF02826.19 gi|119873461|ref|YP_931468.1| - 0.18 11.1 0.0 0.23 10.8 0.0 1.1 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Asp_protease_2 PF13650.6 gi|119873462|ref|YP_931469.1| - 2.6e-06 28.0 0.1 6.8e-06 26.6 0.1 1.8 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|119873462|ref|YP_931469.1| - 9e-06 26.2 0.0 4.3e-05 24.0 0.0 1.8 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease PF09668.10 gi|119873462|ref|YP_931469.1| - 0.028 14.2 0.0 0.031 14.1 0.0 1.1 1 0 0 1 1 1 0 Aspartyl protease RVP PF00077.20 gi|119873462|ref|YP_931469.1| - 0.071 13.4 0.0 3.6 8.0 0.0 2.3 1 1 1 2 2 2 0 Retroviral aspartyl protease Nitrate_red_del PF02613.15 gi|119873465|ref|YP_931472.1| - 3.9e-17 62.6 0.0 5.3e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit Peptidase_C71 PF12386.8 gi|119873465|ref|YP_931472.1| - 0.016 14.8 0.0 0.022 14.4 0.0 1.2 1 0 0 1 1 1 0 Pseudomurein endo-isopeptidase Pei Fer4 PF00037.27 gi|119873466|ref|YP_931473.1| - 6.8e-19 66.8 53.2 5.5e-07 29.1 2.9 6.4 8 0 0 8 8 7 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873466|ref|YP_931473.1| - 6.1e-17 60.9 49.1 6.3e-06 26.0 1.9 6.4 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119873466|ref|YP_931473.1| - 1.4e-15 57.6 38.6 4.9e-07 30.2 10.3 4.1 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873466|ref|YP_931473.1| - 3.7e-15 55.8 50.6 2.6e-07 30.7 11.7 4.4 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873466|ref|YP_931473.1| - 7.9e-15 55.5 32.0 0.0014 19.5 1.0 4.8 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119873466|ref|YP_931473.1| - 2.1e-14 52.6 46.8 8.4e-05 22.4 2.4 6.7 6 1 0 6 6 6 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119873466|ref|YP_931473.1| - 2.5e-13 49.9 52.4 3e-08 33.7 11.4 4.2 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119873466|ref|YP_931473.1| - 1.2e-11 44.5 43.7 1.1e-07 31.9 11.5 4.5 2 2 3 5 5 5 4 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|119873466|ref|YP_931473.1| - 8.4e-06 26.0 20.5 0.00072 19.7 2.4 3.6 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119873466|ref|YP_931473.1| - 3.5e-05 24.2 40.9 0.093 13.2 1.6 5.1 4 2 2 6 6 6 5 4Fe-4S dicluster domain DUF35_N PF12172.8 gi|119873466|ref|YP_931473.1| - 0.00014 21.7 1.8 0.00014 21.7 1.8 4.4 6 0 0 6 6 6 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Fer4_4 PF12800.7 gi|119873466|ref|YP_931473.1| - 0.00033 20.9 12.3 0.00078 19.8 3.3 6.0 8 0 0 8 8 4 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119873466|ref|YP_931473.1| - 0.00087 20.0 26.6 0.11 13.2 2.1 5.1 4 1 0 4 4 4 3 4Fe-4S single cluster domain Rubredoxin_2 PF18073.1 gi|119873466|ref|YP_931473.1| - 0.0065 16.2 3.1 0.0065 16.2 3.1 4.5 6 0 0 6 6 4 1 Rubredoxin metal binding domain ADK_lid PF05191.14 gi|119873466|ref|YP_931473.1| - 0.022 14.7 2.1 0.022 14.7 2.1 3.6 4 1 0 4 4 3 0 Adenylate kinase, active site lid Fer4_19 PF06902.11 gi|119873466|ref|YP_931473.1| - 0.022 14.8 12.4 2.2 8.5 0.1 4.2 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_17 PF13534.6 gi|119873466|ref|YP_931473.1| - 0.025 15.1 45.6 0.077 13.6 3.5 5.3 4 3 1 6 6 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119873466|ref|YP_931473.1| - 0.071 13.7 36.3 0.16 12.5 2.3 5.1 5 0 0 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I zf-ribbon_3 PF13248.6 gi|119873466|ref|YP_931473.1| - 2.5 7.7 14.6 3.8 7.1 6.7 4.3 3 1 0 3 3 3 0 zinc-ribbon domain TPR_4 PF07721.14 gi|119873467|ref|YP_931474.1| - 1.9e-06 27.9 14.1 0.036 14.7 0.0 6.4 6 0 0 6 6 6 2 Tetratricopeptide repeat TPR_12 PF13424.6 gi|119873467|ref|YP_931474.1| - 2.6e-05 24.4 6.8 0.096 13.0 3.7 4.0 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|119873467|ref|YP_931474.1| - 0.00015 21.4 5.4 0.056 13.3 0.8 3.4 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.17 gi|119873467|ref|YP_931474.1| - 0.00035 20.5 10.2 0.4 10.9 0.4 5.0 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.6 gi|119873467|ref|YP_931474.1| - 0.00047 20.2 3.1 0.44 10.9 0.1 3.5 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_17 PF13431.6 gi|119873467|ref|YP_931474.1| - 0.022 15.1 1.0 3.2 8.3 0.5 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_7 PF13176.6 gi|119873467|ref|YP_931474.1| - 0.1 12.7 9.6 7.4 6.8 0.2 5.1 5 0 0 5 5 5 0 Tetratricopeptide repeat TPR_19 PF14559.6 gi|119873467|ref|YP_931474.1| - 0.11 13.1 8.8 0.52 10.9 0.1 4.0 4 0 0 4 4 4 0 Tetratricopeptide repeat MOZART1 PF12554.8 gi|119873467|ref|YP_931474.1| - 0.13 12.1 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Mitotic-spindle organizing gamma-tubulin ring associated TPR_6 PF13174.6 gi|119873467|ref|YP_931474.1| - 0.16 12.6 8.7 0.5 11.1 0.0 4.8 6 0 0 6 6 4 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|119873467|ref|YP_931474.1| - 1.9 8.5 0.0 0.72 9.8 0.4 5.1 6 1 1 7 7 7 0 Tetratricopeptide repeat KASH_CCD PF14662.6 gi|119873468|ref|YP_931475.1| - 0.022 14.6 0.2 0.029 14.2 0.2 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Fer4_11 PF13247.6 gi|119873469|ref|YP_931476.1| - 4.6e-28 97.3 8.4 8.9e-28 96.4 8.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873469|ref|YP_931476.1| - 5.3e-13 49.4 24.9 6e-09 36.4 10.1 3.0 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873469|ref|YP_931476.1| - 2.1e-12 47.0 28.6 2.3e-07 30.9 8.8 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119873469|ref|YP_931476.1| - 3.3e-10 39.3 34.3 5.6e-08 32.3 1.9 5.7 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873469|ref|YP_931476.1| - 1.1e-08 34.7 32.0 6.8e-07 29.1 2.8 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119873469|ref|YP_931476.1| - 1.8e-08 34.4 25.7 3.2e-08 33.6 8.1 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119873469|ref|YP_931476.1| - 1e-07 32.3 39.7 0.0041 17.9 4.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|119873469|ref|YP_931476.1| - 1.5e-06 28.0 29.5 7.2e-06 25.8 1.9 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119873469|ref|YP_931476.1| - 3.9e-05 23.8 33.9 0.00024 21.4 3.2 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|119873469|ref|YP_931476.1| - 0.0044 17.9 27.7 0.11 13.5 5.7 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|119873469|ref|YP_931476.1| - 0.0048 17.0 10.7 0.0048 17.0 10.7 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119873469|ref|YP_931476.1| - 0.031 15.0 2.1 0.031 15.0 2.1 3.5 4 1 0 4 4 4 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119873469|ref|YP_931476.1| - 0.071 13.7 1.4 0.071 13.7 1.4 3.9 3 1 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|119873469|ref|YP_931476.1| - 0.38 11.3 25.9 0.34 11.5 5.3 4.5 2 1 3 5 5 5 0 4Fe-4S dicluster domain GF_recep_IV PF14843.6 gi|119873469|ref|YP_931476.1| - 3.2 7.6 19.4 0.11 12.3 4.1 2.5 2 1 1 3 3 3 0 Growth factor receptor domain IV Ni_hydr_CYTB PF01292.20 gi|119873470|ref|YP_931477.1| - 1.1e-10 41.4 16.5 2.3e-10 40.4 16.5 1.4 1 1 0 1 1 1 1 Prokaryotic cytochrome b561 DUF4405 PF14358.6 gi|119873470|ref|YP_931477.1| - 0.73 10.4 26.1 0.52 10.9 5.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) XhlA PF10779.9 gi|119873470|ref|YP_931477.1| - 1.6 9.0 2.8 3.8 7.8 2.8 1.6 1 0 0 1 1 1 0 Haemolysin XhlA Molybdopterin PF00384.22 gi|119873471|ref|YP_931478.1| - 7.5e-10 38.3 0.0 5.9e-09 35.4 0.0 2.2 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|119873471|ref|YP_931478.1| - 1.3e-08 34.9 0.0 3.3e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TAT_signal PF10518.9 gi|119873471|ref|YP_931478.1| - 2.5e-05 23.9 4.1 2.5e-05 23.9 4.1 3.5 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence Flexi_CP PF00286.20 gi|119873471|ref|YP_931478.1| - 0.095 12.6 1.2 0.58 10.1 0.3 2.3 2 0 0 2 2 2 0 Viral coat protein Molybdop_Fe4S4 PF04879.16 gi|119873471|ref|YP_931478.1| - 0.14 12.2 0.5 0.3 11.1 0.5 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain UCR_Fe-S_N PF10399.9 gi|119873471|ref|YP_931478.1| - 0.69 9.3 14.3 0.52 9.7 2.9 3.3 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Fer4 PF00037.27 gi|119873473|ref|YP_931480.1| - 2.4e-15 55.6 9.5 2.5e-07 30.2 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873473|ref|YP_931480.1| - 4.5e-12 45.5 11.2 1.6e-06 27.9 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|119873473|ref|YP_931480.1| - 1.3e-10 41.7 6.8 8.7e-05 23.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|119873473|ref|YP_931480.1| - 1.9e-09 37.5 10.6 2.1e-08 34.2 10.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873473|ref|YP_931480.1| - 1.9e-09 38.3 8.7 0.00021 22.2 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|119873473|ref|YP_931480.1| - 1.5e-08 34.2 15.8 0.00049 20.0 4.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|119873473|ref|YP_931480.1| - 8.3e-08 32.2 13.1 0.00023 21.4 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|119873473|ref|YP_931480.1| - 1.7e-07 31.2 23.9 2e-06 27.8 13.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|119873473|ref|YP_931480.1| - 4.4e-07 30.0 11.9 3.9e-05 23.7 12.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|119873473|ref|YP_931480.1| - 6.1e-07 29.9 6.7 0.0047 17.4 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|119873473|ref|YP_931480.1| - 7.5e-06 26.5 18.1 0.0069 17.2 4.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|119873473|ref|YP_931480.1| - 0.00044 20.6 13.7 0.021 15.3 1.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|119873473|ref|YP_931480.1| - 0.00069 20.3 8.9 0.11 13.3 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|119873473|ref|YP_931480.1| - 0.0017 18.8 12.0 0.071 13.7 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|119873473|ref|YP_931480.1| - 0.007 16.6 7.1 0.014 15.6 7.1 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|119873473|ref|YP_931480.1| - 0.4 10.5 9.6 0.091 12.5 1.3 2.5 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|119873473|ref|YP_931480.1| - 2.7 8.9 16.3 3.8 8.4 4.3 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain TrmB PF01978.19 gi|119873474|ref|YP_931481.1| - 0.0032 17.3 0.1 0.0065 16.3 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB FdhD-NarQ PF02634.15 gi|119873475|ref|YP_931482.1| - 2.7e-28 99.2 0.1 9.7e-28 97.4 0.1 1.7 1 1 0 1 1 1 1 FdhD/NarQ family Prot_ATP_OB_N PF17758.1 gi|119873475|ref|YP_931482.1| - 0.083 12.6 0.0 0.36 10.5 0.0 2.0 2 0 0 2 2 2 0 Proteasomal ATPase OB N-terminal domain bPH_1 PF08000.11 gi|119873476|ref|YP_931483.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.3 1 1 0 1 1 1 0 Bacterial PH domain Molybdopterin PF00384.22 gi|119873477|ref|YP_931484.1| - 6.9e-46 157.1 0.0 1.3e-43 149.6 0.0 3.8 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|119873477|ref|YP_931484.1| - 1e-14 54.2 0.6 1.9e-14 53.4 0.6 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|119873477|ref|YP_931484.1| - 1.7e-12 47.4 0.0 4.6e-12 46.0 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MazE_antitoxin PF04014.18 gi|119873477|ref|YP_931484.1| - 0.011 15.6 0.0 0.35 10.9 0.0 3.0 3 0 0 3 3 3 0 Antidote-toxin recognition MazE, bacterial antitoxin Fer4_11 PF13247.6 gi|119873478|ref|YP_931485.1| - 1.2e-22 79.9 10.7 1.2e-22 79.9 10.7 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|119873478|ref|YP_931485.1| - 2.1e-13 50.6 25.8 7.1e-07 29.7 6.0 3.8 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|119873478|ref|YP_931485.1| - 2.4e-13 50.0 21.2 4.5e-07 29.9 10.1 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|119873478|ref|YP_931485.1| - 7.3e-12 44.6 43.6 4.8e-07 29.3 5.0 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|119873478|ref|YP_931485.1| - 3e-11 43.3 22.6 1.9e-05 24.8 9.7 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|119873478|ref|YP_931485.1| - 3.6e-09 36.2 37.3 3.1e-05 23.8 2.7 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|119873478|ref|YP_931485.1| - 3.3e-08 33.2 40.6 0.0002 21.3 4.7 5.1 5 1 0 5 5 5 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|119873478|ref|YP_931485.1| - 1.7e-06 28.1 28.5 3.5e-05 23.8 10.9 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|119873478|ref|YP_931485.1| - 5.6e-06 26.7 23.3 6.8e-05 23.2 2.5 3.7 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|119873478|ref|YP_931485.1| - 8.1e-06 26.7 26.2 0.25 12.3 2.3 4.7 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|119873478|ref|YP_931485.1| - 0.00016 22.3 43.5 0.22 12.5 2.6 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|119873478|ref|YP_931485.1| - 0.00018 22.2 24.3 0.045 14.5 1.4 4.1 3 1 1 4 4 4 2 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|119873478|ref|YP_931485.1| - 0.00033 20.9 34.8 0.0052 17.2 1.2 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|119873478|ref|YP_931485.1| - 0.021 15.3 2.9 0.021 15.3 2.9 4.3 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|119873478|ref|YP_931485.1| - 0.31 11.6 32.3 0.11 13.1 3.8 4.7 3 2 1 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Ni_hydr_CYTB PF01292.20 gi|119873479|ref|YP_931486.1| - 3.7e-17 62.5 13.9 4.3e-17 62.3 13.9 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 SUR7 PF06687.12 gi|119873479|ref|YP_931486.1| - 0.19 11.3 2.4 6.6 6.3 0.2 2.5 1 1 1 2 2 2 0 SUR7/PalI family zinc_ribbon_4 PF13717.6 gi|119873480|ref|YP_931487.1| - 0.013 15.4 4.4 7.5 6.6 0.1 3.5 3 0 0 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|119873480|ref|YP_931487.1| - 0.014 15.4 6.4 0.11 12.5 2.7 3.0 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|119873480|ref|YP_931487.1| - 0.046 14.5 4.4 4.4 8.1 2.2 2.8 2 1 0 2 2 2 0 zinc-ribbon family FdhE PF04216.12 gi|119873480|ref|YP_931487.1| - 0.052 13.4 3.0 0.084 12.7 3.0 1.3 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_10 PF10058.9 gi|119873480|ref|YP_931487.1| - 0.055 13.2 8.6 1.2 8.9 0.0 3.2 4 0 0 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-ribbon_3 PF13248.6 gi|119873480|ref|YP_931487.1| - 0.1 12.0 10.8 0.42 10.1 0.2 3.6 3 0 0 3 3 3 0 zinc-ribbon domain CxC4 PF18717.1 gi|119873480|ref|YP_931487.1| - 0.13 12.1 3.7 0.3 10.9 3.7 1.5 1 1 0 1 1 1 0 CxC4 like cysteine cluster associated with KDZ transposases Rubredoxin_2 PF18073.1 gi|119873480|ref|YP_931487.1| - 0.18 11.5 17.3 4.3 7.1 5.8 3.4 3 0 0 3 3 3 0 Rubredoxin metal binding domain Elf1 PF05129.13 gi|119873480|ref|YP_931487.1| - 0.27 11.3 3.2 0.54 10.3 0.1 2.5 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like DZR PF12773.7 gi|119873480|ref|YP_931487.1| - 0.49 10.5 7.9 5.2 7.2 6.4 2.8 2 1 1 3 3 3 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|119873480|ref|YP_931487.1| - 0.55 10.3 7.6 15 5.7 7.6 2.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain CpXC PF14353.6 gi|119873480|ref|YP_931487.1| - 1.7 8.7 5.9 2 8.5 1.5 2.7 1 1 1 2 2 1 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|119873480|ref|YP_931487.1| - 2.1 7.9 12.9 1.3 8.6 3.7 3.2 2 2 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|119873480|ref|YP_931487.1| - 2.9 7.7 16.5 0.63 9.8 0.3 3.7 4 0 0 4 4 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|119873480|ref|YP_931487.1| - 3.2 7.6 5.7 18 5.2 0.2 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|119873480|ref|YP_931487.1| - 8.5 6.6 12.9 12 6.2 0.2 3.7 2 1 0 2 2 2 0 Zinc ribbon domain Thi4 PF01946.17 gi|119873481|ref|YP_931488.1| - 2.8e-71 239.5 0.1 3.3e-71 239.3 0.1 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|119873481|ref|YP_931488.1| - 1.1e-13 51.5 3.4 3.7e-08 33.3 1.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|119873481|ref|YP_931488.1| - 2.7e-10 39.9 0.6 3.5e-07 29.7 0.2 3.0 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|119873481|ref|YP_931488.1| - 2.7e-09 37.1 0.8 8.3e-09 35.6 0.8 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|119873481|ref|YP_931488.1| - 1e-08 34.8 0.3 3.8e-08 32.9 0.1 1.8 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|119873481|ref|YP_931488.1| - 1.7e-07 30.8 0.0 2.5e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|119873481|ref|YP_931488.1| - 3.5e-06 26.0 0.5 5.5e-06 25.3 0.5 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.7 gi|119873481|ref|YP_931488.1| - 5e-06 26.1 0.9 9.8e-06 25.2 0.8 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|119873481|ref|YP_931488.1| - 6.2e-06 25.8 1.2 6.1e-05 22.5 0.2 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|119873481|ref|YP_931488.1| - 0.0002 21.9 0.4 0.002 18.6 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|119873481|ref|YP_931488.1| - 0.0012 18.0 0.5 0.0018 17.4 0.5 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|119873481|ref|YP_931488.1| - 0.0025 17.2 0.0 0.0039 16.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|119873481|ref|YP_931488.1| - 0.012 15.6 0.5 0.025 14.6 0.5 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|119873481|ref|YP_931488.1| - 0.013 14.6 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|119873481|ref|YP_931488.1| - 0.013 14.8 0.0 0.091 12.0 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|119873481|ref|YP_931488.1| - 0.024 14.5 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|119873481|ref|YP_931488.1| - 0.027 13.3 0.4 0.04 12.8 0.4 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Shikimate_DH PF01488.20 gi|119873481|ref|YP_931488.1| - 0.035 14.2 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|119873481|ref|YP_931488.1| - 0.039 13.9 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|119873481|ref|YP_931488.1| - 0.045 13.1 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|119873481|ref|YP_931488.1| - 0.052 13.1 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|119873481|ref|YP_931488.1| - 0.072 13.4 0.1 0.21 11.9 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|119873481|ref|YP_931488.1| - 0.087 13.3 0.1 0.15 12.5 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|119873481|ref|YP_931488.1| - 0.15 11.7 0.1 0.32 10.6 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA zf-ribbon_3 PF13248.6 gi|119873482|ref|YP_931489.1| - 0.0046 16.3 0.2 0.01 15.2 0.0 1.7 2 0 0 2 2 2 1 zinc-ribbon domain zf-SNAP50_C PF12251.8 gi|119873482|ref|YP_931489.1| - 0.0067 16.1 0.9 0.0072 16.0 0.9 1.0 1 0 0 1 1 1 1 snRNA-activating protein of 50kDa MW C terminal zf-MYND PF01753.18 gi|119873482|ref|YP_931489.1| - 0.071 13.2 4.0 0.11 12.6 4.0 1.4 1 1 0 1 1 1 0 MYND finger zf-C6H2 PF15801.5 gi|119873482|ref|YP_931489.1| - 0.37 11.1 9.0 11 6.4 9.0 2.1 1 1 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding Amidohydro_1 PF01979.20 gi|119873483|ref|YP_931490.1| - 4.4e-05 23.0 0.0 0.0013 18.1 0.0 2.1 1 1 1 2 2 2 2 Amidohydrolase family HTH_20 PF12840.7 gi|119873484|ref|YP_931491.1| - 1.9e-14 53.5 0.1 5.4e-14 52.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|119873484|ref|YP_931491.1| - 1.7e-09 37.4 0.1 3.6e-09 36.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|119873484|ref|YP_931491.1| - 7.9e-05 22.1 0.0 0.00029 20.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RHH_8 PF17723.1 gi|119873484|ref|YP_931491.1| - 0.0037 17.5 0.3 0.0091 16.2 0.1 1.8 2 0 0 2 2 2 1 Ribbon-Helix-Helix transcriptional regulator family Mrr_N PF14338.6 gi|119873484|ref|YP_931491.1| - 0.0055 16.8 0.0 0.015 15.4 0.0 1.8 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_11 PF08279.12 gi|119873484|ref|YP_931491.1| - 0.027 14.4 0.0 0.064 13.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|119873484|ref|YP_931491.1| - 0.043 13.9 0.0 0.12 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|119873484|ref|YP_931491.1| - 0.09 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix TGT PF01702.18 gi|119873486|ref|YP_931493.1| - 7.7e-06 25.3 0.0 1.1e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Mastoparan_2 PF08251.11 gi|119873486|ref|YP_931493.1| - 0.14 12.4 0.1 0.36 11.1 0.1 1.8 1 0 0 1 1 1 0 Mastoparan peptide Trm112p PF03966.16 gi|119873487|ref|YP_931494.1| - 2.3e-18 66.5 1.6 4.4e-18 65.6 1.6 1.4 1 0 0 1 1 1 1 Trm112p-like protein kleA_kleC PF17383.2 gi|119873487|ref|YP_931494.1| - 0.0073 16.6 0.0 0.011 16.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized KorC regulated protein A zf-RING_7 PF02591.15 gi|119873487|ref|YP_931494.1| - 0.016 15.4 1.6 0.18 12.0 0.1 2.9 3 0 0 3 3 3 0 C4-type zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|119873487|ref|YP_931494.1| - 0.061 14.1 2.6 0.082 13.7 2.6 1.3 1 0 0 1 1 1 0 zinc-ribbon family NOB1_Zn_bind PF08772.11 gi|119873487|ref|YP_931494.1| - 0.12 12.5 0.9 0.23 11.7 0.1 1.8 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|119873487|ref|YP_931494.1| - 0.16 12.0 1.1 0.28 11.2 1.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|119873487|ref|YP_931494.1| - 0.26 11.2 6.6 0.86 9.5 0.0 2.9 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|119873487|ref|YP_931494.1| - 1.6 8.6 0.0 1.6 8.6 0.0 3.2 4 1 0 4 4 4 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|119873487|ref|YP_931494.1| - 4 8.0 11.3 1.2 9.7 1.2 3.4 3 0 0 3 3 3 0 Zinc-finger double domain DUF134 PF02001.16 gi|119873488|ref|YP_931495.1| - 2.1e-11 44.2 0.0 2.5e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF134 HTH_23 PF13384.6 gi|119873488|ref|YP_931495.1| - 2.2e-05 24.1 0.2 5.8e-05 22.8 0.2 1.7 1 1 0 1 1 1 1 Homeodomain-like domain HTH_31 PF13560.6 gi|119873488|ref|YP_931495.1| - 4.4e-05 23.7 3.0 7.6e-05 23.0 3.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|119873488|ref|YP_931495.1| - 0.00011 22.2 0.1 0.00015 21.7 0.1 1.2 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4_2 PF08281.12 gi|119873488|ref|YP_931495.1| - 0.00023 20.8 0.1 0.00044 19.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|119873488|ref|YP_931495.1| - 0.0011 18.9 0.1 0.0011 18.9 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn helix HTH_10 PF04967.12 gi|119873488|ref|YP_931495.1| - 0.0013 18.5 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|119873488|ref|YP_931495.1| - 0.0047 16.4 0.1 0.0081 15.7 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|119873488|ref|YP_931495.1| - 0.005 16.8 0.2 0.0076 16.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_17 PF12728.7 gi|119873488|ref|YP_931495.1| - 0.0063 16.7 0.0 0.013 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LacI PF00356.21 gi|119873488|ref|YP_931495.1| - 0.01 15.6 0.1 0.022 14.6 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_24 PF13412.6 gi|119873488|ref|YP_931495.1| - 0.015 14.8 0.2 0.03 13.9 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ycf4 PF02392.16 gi|119873488|ref|YP_931495.1| - 0.028 14.0 0.0 0.034 13.7 0.0 1.1 1 0 0 1 1 1 0 Ycf4 HTH_7 PF02796.15 gi|119873488|ref|YP_931495.1| - 0.042 13.9 0.0 0.087 12.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain of resolvase RWP-RK PF02042.15 gi|119873488|ref|YP_931495.1| - 0.1 12.6 0.0 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 RWP-RK domain TetR_N PF00440.23 gi|119873488|ref|YP_931495.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Tnp_1_2 PF13022.6 gi|119873488|ref|YP_931495.1| - 0.17 12.0 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Colicin_D PF11429.8 gi|119873489|ref|YP_931496.1| - 0.2 12.2 0.0 0.26 11.8 0.0 1.1 1 0 0 1 1 1 0 Colicin D SWIM PF04434.17 gi|119873492|ref|YP_931499.1| - 0.0041 16.7 0.4 0.0086 15.7 0.4 1.5 1 0 0 1 1 1 1 SWIM zinc finger Sod_Fe_C PF02777.18 gi|119873493|ref|YP_931500.1| - 2.9e-34 117.3 0.6 4.2e-34 116.8 0.6 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|119873493|ref|YP_931500.1| - 5.3e-31 106.9 2.7 7.2e-31 106.5 0.9 2.0 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain ABC2_membrane PF01061.24 gi|119873496|ref|YP_931503.1| - 2.6e-30 105.4 15.6 3.2e-30 105.1 15.6 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|119873496|ref|YP_931503.1| - 7.5e-14 51.6 15.3 9e-14 51.3 15.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|119873496|ref|YP_931503.1| - 4.1e-05 23.0 18.5 0.00012 21.5 18.5 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|119873496|ref|YP_931503.1| - 0.0003 20.8 6.4 0.00066 19.7 6.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein OATP PF03137.20 gi|119873496|ref|YP_931503.1| - 0.36 9.1 2.9 0.61 8.3 2.9 1.5 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family ABC_tran PF00005.27 gi|119873497|ref|YP_931504.1| - 1.7e-28 99.8 0.0 2.5e-28 99.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|119873497|ref|YP_931504.1| - 1.7e-10 41.2 0.3 0.00017 21.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|119873497|ref|YP_931504.1| - 7.5e-06 26.6 0.0 1.4e-05 25.7 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|119873497|ref|YP_931504.1| - 0.027 15.0 0.6 0.043 14.3 0.6 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|119873497|ref|YP_931504.1| - 0.045 14.2 0.1 0.41 11.1 0.1 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|119873497|ref|YP_931504.1| - 0.074 12.7 0.2 0.17 11.5 0.2 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|119873497|ref|YP_931504.1| - 0.17 11.6 0.3 0.38 10.5 0.3 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Peptidase_S24 PF00717.23 gi|119873498|ref|YP_931505.1| - 1.3e-05 25.1 0.0 2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_islandicum_DSM_4184_uid58635/NC_008701.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_islandicum_DSM_4184_uid58635/NC_008701.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_islandicum_DSM_4184_uid58635/NC_008701.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_islandicum_DSM_4184_uid58635/NC_008701.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:11:12 2019 # [ok]