# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Ribosomal_S7 PF00177.21 gi|145590268|ref|YP_001152270.1| - 4.7e-44 149.6 0.2 6e-44 149.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Rep_fac_C PF08542.11 gi|145590269|ref|YP_001152271.1| - 5.2e-19 68.5 0.0 1.3e-18 67.2 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|145590269|ref|YP_001152271.1| - 1.6e-16 60.9 0.0 3e-16 60.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|145590269|ref|YP_001152271.1| - 3e-15 56.4 0.0 3e-11 43.3 0.1 2.5 2 1 1 3 3 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|145590269|ref|YP_001152271.1| - 1.2e-08 34.8 0.0 3.4e-08 33.4 0.0 1.7 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|145590269|ref|YP_001152271.1| - 7.5e-08 32.9 0.6 0.00052 20.4 0.0 3.1 2 2 1 3 3 3 2 AAA ATPase domain AAA_14 PF13173.6 gi|145590269|ref|YP_001152271.1| - 8.1e-07 29.1 0.0 4.4e-06 26.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|145590269|ref|YP_001152271.1| - 8.9e-07 29.2 0.9 1.8e-06 28.2 0.2 1.9 2 0 0 2 2 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|145590269|ref|YP_001152271.1| - 2.6e-06 27.7 0.2 0.081 13.2 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|145590269|ref|YP_001152271.1| - 1.1e-05 25.3 0.0 1.9e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|145590269|ref|YP_001152271.1| - 1.3e-05 25.7 0.0 0.0006 20.4 0.0 2.5 1 1 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|145590269|ref|YP_001152271.1| - 5.4e-05 23.2 0.0 0.00018 21.5 0.0 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_5 PF07728.14 gi|145590269|ref|YP_001152271.1| - 0.00013 22.0 0.1 0.00053 20.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|145590269|ref|YP_001152271.1| - 0.00013 21.6 0.0 0.0003 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|145590269|ref|YP_001152271.1| - 0.00019 21.2 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|145590269|ref|YP_001152271.1| - 0.00023 20.6 0.0 0.0064 15.9 0.0 2.7 1 1 2 3 3 3 1 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|145590269|ref|YP_001152271.1| - 0.00032 20.2 0.0 0.42 10.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ResIII PF04851.15 gi|145590269|ref|YP_001152271.1| - 0.00036 20.6 0.0 0.0037 17.3 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|145590269|ref|YP_001152271.1| - 0.0016 18.2 0.4 0.0068 16.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|145590269|ref|YP_001152271.1| - 0.0024 18.1 0.0 0.0049 17.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain TIP49_C PF17856.1 gi|145590269|ref|YP_001152271.1| - 0.0026 17.9 0.1 0.0067 16.5 0.1 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain DEAD PF00270.29 gi|145590269|ref|YP_001152271.1| - 0.0029 17.4 0.3 0.083 12.6 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_11 PF13086.6 gi|145590269|ref|YP_001152271.1| - 0.0032 17.3 0.0 0.014 15.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.22 gi|145590269|ref|YP_001152271.1| - 0.004 17.5 0.0 0.0095 16.3 0.0 1.6 2 0 0 2 2 1 1 RNA helicase DNA_pol3_delta PF06144.13 gi|145590269|ref|YP_001152271.1| - 0.0065 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit IstB_IS21 PF01695.17 gi|145590269|ref|YP_001152271.1| - 0.0078 16.0 0.0 0.022 14.5 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|145590269|ref|YP_001152271.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_19 PF13245.6 gi|145590269|ref|YP_001152271.1| - 0.014 15.8 0.2 0.25 11.7 0.0 2.3 2 1 1 3 3 3 0 AAA domain TIP49 PF06068.13 gi|145590269|ref|YP_001152271.1| - 0.014 14.6 0.0 0.049 12.8 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_28 PF13521.6 gi|145590269|ref|YP_001152271.1| - 0.022 15.0 0.0 0.054 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|145590269|ref|YP_001152271.1| - 0.025 13.6 0.0 0.47 9.5 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein TniB PF05621.11 gi|145590269|ref|YP_001152271.1| - 0.026 13.9 0.1 0.92 8.9 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein DUF2075 PF09848.9 gi|145590269|ref|YP_001152271.1| - 0.05 12.8 0.0 0.84 8.8 0.0 2.2 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|145590269|ref|YP_001152271.1| - 0.059 13.1 0.0 0.089 12.5 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ATPase_2 PF01637.18 gi|145590269|ref|YP_001152271.1| - 0.072 13.0 0.0 0.17 11.8 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|145590269|ref|YP_001152271.1| - 0.077 12.2 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|145590269|ref|YP_001152271.1| - 0.16 12.5 0.0 0.44 11.1 0.0 1.9 1 1 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|145590269|ref|YP_001152271.1| - 0.18 11.7 0.0 5.7 6.8 0.0 2.2 1 1 1 2 2 2 0 NACHT domain Parvo_NS1 PF01057.17 gi|145590269|ref|YP_001152271.1| - 0.22 10.6 0.0 0.38 9.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 HSCB_C PF07743.13 gi|145590269|ref|YP_001152271.1| - 1.1 9.8 6.8 1.8 9.1 0.0 3.7 4 2 0 4 4 3 0 HSCB C-terminal oligomerisation domain AAA PF00004.29 gi|145590270|ref|YP_001152272.1| - 4.3e-15 56.3 0.0 1.2e-14 54.8 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|145590270|ref|YP_001152272.1| - 6.2e-07 29.5 0.1 9.3e-06 25.7 0.0 2.7 2 1 0 2 2 2 1 Rad17 P-loop domain RuvB_N PF05496.12 gi|145590270|ref|YP_001152272.1| - 3.6e-06 26.8 0.0 1.9e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|145590270|ref|YP_001152272.1| - 4.8e-06 26.9 0.0 4.2e-05 23.9 0.0 2.2 2 0 0 2 2 2 1 RNA helicase DNA_pol3_delta PF06144.13 gi|145590270|ref|YP_001152272.1| - 5.3e-06 26.3 0.0 0.00012 22.0 0.0 2.6 3 0 0 3 3 3 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|145590270|ref|YP_001152272.1| - 7.7e-06 26.4 0.1 7.6e-05 23.2 0.1 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|145590270|ref|YP_001152272.1| - 1.4e-05 25.6 0.1 5.3e-05 23.8 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_5 PF07728.14 gi|145590270|ref|YP_001152272.1| - 1.7e-05 24.8 0.1 6e-05 23.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|145590270|ref|YP_001152272.1| - 6.4e-05 23.0 0.0 0.00021 21.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|145590270|ref|YP_001152272.1| - 7e-05 23.1 0.5 0.011 16.0 0.0 3.1 2 1 2 4 4 3 1 AAA domain TIP49 PF06068.13 gi|145590270|ref|YP_001152272.1| - 8.3e-05 22.0 0.0 0.00016 21.0 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_2 PF07724.14 gi|145590270|ref|YP_001152272.1| - 9.2e-05 22.6 0.0 0.00018 21.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|145590270|ref|YP_001152272.1| - 0.00012 22.3 0.0 0.00026 21.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|145590270|ref|YP_001152272.1| - 0.00018 20.8 0.0 0.00036 19.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|145590270|ref|YP_001152272.1| - 0.00034 20.5 0.3 0.0026 17.7 0.0 2.4 3 0 0 3 3 2 1 NTPase AAA_28 PF13521.6 gi|145590270|ref|YP_001152272.1| - 0.00046 20.5 0.1 0.0015 18.8 0.0 1.8 2 0 0 2 2 1 1 AAA domain NACHT PF05729.12 gi|145590270|ref|YP_001152272.1| - 0.00093 19.2 0.0 0.023 14.6 0.0 2.5 1 1 1 2 2 2 1 NACHT domain AAA_17 PF13207.6 gi|145590270|ref|YP_001152272.1| - 0.0011 19.4 0.1 0.004 17.6 0.0 1.9 2 0 0 2 2 1 1 AAA domain Bac_DnaA PF00308.18 gi|145590270|ref|YP_001152272.1| - 0.0012 18.8 0.0 0.0063 16.4 0.0 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein RsgA_GTPase PF03193.16 gi|145590270|ref|YP_001152272.1| - 0.0014 18.5 0.0 0.0034 17.3 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_7 PF12775.7 gi|145590270|ref|YP_001152272.1| - 0.0015 18.1 0.0 0.0027 17.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|145590270|ref|YP_001152272.1| - 0.0022 18.3 0.1 0.0075 16.6 0.0 2.0 2 0 0 2 2 1 1 AAA C-terminal domain TsaE PF02367.17 gi|145590270|ref|YP_001152272.1| - 0.0022 18.0 0.0 0.0067 16.4 0.0 1.8 2 0 0 2 2 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|145590270|ref|YP_001152272.1| - 0.0025 17.6 0.0 0.0077 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|145590270|ref|YP_001152272.1| - 0.0041 16.3 0.0 0.014 14.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_3 PF07726.11 gi|145590270|ref|YP_001152272.1| - 0.0053 16.6 0.0 0.014 15.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RFC1 PF08519.12 gi|145590270|ref|YP_001152272.1| - 0.0057 16.8 0.0 0.0097 16.1 0.0 1.4 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain IstB_IS21 PF01695.17 gi|145590270|ref|YP_001152272.1| - 0.0063 16.3 0.1 0.019 14.7 0.0 1.8 2 1 0 2 2 1 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|145590270|ref|YP_001152272.1| - 0.0084 16.6 0.0 0.053 14.0 0.0 2.2 3 0 0 3 3 2 1 ABC transporter AAA_25 PF13481.6 gi|145590270|ref|YP_001152272.1| - 0.012 15.2 0.0 0.029 13.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|145590270|ref|YP_001152272.1| - 0.013 15.2 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase MMR_HSR1 PF01926.23 gi|145590270|ref|YP_001152272.1| - 0.013 15.5 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|145590270|ref|YP_001152272.1| - 0.014 15.1 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HEAT_2 PF13646.6 gi|145590270|ref|YP_001152272.1| - 0.028 14.8 0.2 0.99 9.8 0.1 2.5 2 0 0 2 2 2 0 HEAT repeats AAA_19 PF13245.6 gi|145590270|ref|YP_001152272.1| - 0.039 14.3 0.0 0.09 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|145590270|ref|YP_001152272.1| - 0.067 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain HTH_3 PF01381.22 gi|145590270|ref|YP_001152272.1| - 0.074 13.1 0.3 0.85 9.7 0.1 2.7 3 0 0 3 3 3 0 Helix-turn-helix AAA_24 PF13479.6 gi|145590270|ref|YP_001152272.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|145590270|ref|YP_001152272.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.29 gi|145590270|ref|YP_001152272.1| - 0.14 11.9 0.0 9.1 6.0 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase Mg_chelatase PF01078.21 gi|145590270|ref|YP_001152272.1| - 0.15 11.4 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AFG1_ATPase PF03969.16 gi|145590270|ref|YP_001152272.1| - 0.15 10.9 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 AFG1-like ATPase NB-ARC PF00931.22 gi|145590270|ref|YP_001152272.1| - 0.16 11.1 0.0 0.91 8.7 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_6 PF12774.7 gi|145590270|ref|YP_001152272.1| - 0.18 10.8 0.0 0.29 10.1 0.0 1.3 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region DUF3195 PF11424.8 gi|145590271|ref|YP_001152273.1| - 5.3e-26 90.5 1.8 6.6e-26 90.2 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3195) Cdc6_C PF09079.11 gi|145590272|ref|YP_001152274.1| - 5.6e-20 71.1 0.1 3.3e-19 68.7 0.1 2.2 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|145590272|ref|YP_001152274.1| - 8.2e-10 39.1 0.0 2.2e-09 37.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145590272|ref|YP_001152274.1| - 1.3e-06 28.9 0.0 3.5e-06 27.5 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|145590272|ref|YP_001152274.1| - 0.00053 20.4 0.0 0.0051 17.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|145590272|ref|YP_001152274.1| - 0.011 15.2 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|145590272|ref|YP_001152274.1| - 0.014 15.2 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|145590272|ref|YP_001152274.1| - 0.017 14.8 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|145590272|ref|YP_001152274.1| - 0.017 15.4 0.0 0.034 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145590272|ref|YP_001152274.1| - 0.036 14.1 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_32 PF13654.6 gi|145590272|ref|YP_001152274.1| - 0.049 12.4 0.1 4.2 6.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain TniB PF05621.11 gi|145590272|ref|YP_001152274.1| - 0.058 12.8 0.0 0.18 11.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial TniB protein Sigma54_activat PF00158.26 gi|145590272|ref|YP_001152274.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain PadR PF03551.14 gi|145590272|ref|YP_001152274.1| - 0.12 12.4 0.1 0.33 10.9 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|145590273|ref|YP_001152275.1| - 6.7e-10 38.9 0.3 9e-10 38.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145590273|ref|YP_001152275.1| - 6.2e-07 29.2 0.0 1.1e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|145590273|ref|YP_001152275.1| - 1.3e-06 27.8 0.1 2.2e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145590273|ref|YP_001152275.1| - 9.2e-06 25.5 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|145590273|ref|YP_001152275.1| - 1.1e-05 25.3 0.1 1.8e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|145590273|ref|YP_001152275.1| - 0.00011 22.3 0.2 0.00014 21.9 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|145590273|ref|YP_001152275.1| - 0.0015 18.5 0.2 0.0023 17.8 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|145590273|ref|YP_001152275.1| - 0.0016 18.9 0.1 0.0027 18.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|145590273|ref|YP_001152275.1| - 0.0022 18.3 0.1 0.0028 18.0 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.7 gi|145590273|ref|YP_001152275.1| - 0.0041 17.0 0.2 0.0058 16.5 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|145590273|ref|YP_001152275.1| - 0.0074 16.4 0.1 0.012 15.7 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|145590273|ref|YP_001152275.1| - 0.012 16.0 0.1 0.016 15.5 0.1 1.3 1 1 0 1 1 1 0 Penicillinase repressor TFIIE_alpha PF02002.17 gi|145590273|ref|YP_001152275.1| - 0.02 14.7 0.3 0.04 13.8 0.3 1.6 1 1 0 1 1 1 0 TFIIE alpha subunit Castor_Poll_mid PF06241.12 gi|145590273|ref|YP_001152275.1| - 0.038 14.0 0.1 0.045 13.7 0.1 1.1 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel HTH_IclR PF09339.10 gi|145590273|ref|YP_001152275.1| - 0.086 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mrr_cat PF04471.12 gi|145590274|ref|YP_001152276.1| - 1e-06 28.7 0.0 1.6e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease NucS PF01939.16 gi|145590274|ref|YP_001152276.1| - 0.00016 21.1 0.2 0.0003 20.2 0.2 1.4 1 0 0 1 1 1 1 Endonuclease NucS DUF4143 PF13635.6 gi|145590274|ref|YP_001152276.1| - 0.023 14.9 0.0 0.04 14.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) UPF0102 PF02021.17 gi|145590274|ref|YP_001152276.1| - 0.041 14.1 0.0 0.067 13.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 DUF234 PF03008.14 gi|145590274|ref|YP_001152276.1| - 0.055 13.9 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function IF-2B PF01008.17 gi|145590275|ref|YP_001152277.1| - 1.3e-75 254.2 0.1 1.6e-75 254.0 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family YycI PF09648.10 gi|145590276|ref|YP_001152278.1| - 0.023 14.3 0.0 0.032 13.8 0.0 1.1 1 0 0 1 1 1 0 YycH protein Methyltr_RsmB-F PF01189.17 gi|145590277|ref|YP_001152279.1| - 7.2e-26 91.1 0.0 1.3e-25 90.2 0.0 1.4 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PUA PF01472.20 gi|145590277|ref|YP_001152279.1| - 4.4e-13 49.0 1.1 9.2e-13 48.0 0.7 1.8 2 0 0 2 2 2 1 PUA domain Methyltransf_31 PF13847.6 gi|145590277|ref|YP_001152279.1| - 0.0014 18.5 0.0 0.0023 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltr_RsmF_N PF17125.5 gi|145590277|ref|YP_001152279.1| - 0.0015 19.0 0.0 0.33 11.5 0.0 2.4 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF UPF0113 PF03657.13 gi|145590277|ref|YP_001152279.1| - 0.0016 18.7 0.1 0.0034 17.6 0.1 1.6 1 0 0 1 1 1 1 UPF0113 PUA domain FtsJ PF01728.19 gi|145590277|ref|YP_001152279.1| - 0.089 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase AMMECR1 PF01871.17 gi|145590278|ref|YP_001152280.1| - 3.8e-43 147.0 0.0 4.4e-43 146.8 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DUF3040 PF11239.8 gi|145590280|ref|YP_001152282.1| - 0.52 10.6 4.4 0.64 10.3 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) NfeD PF01957.18 gi|145590281|ref|YP_001152283.1| - 3.7e-12 46.5 0.2 3.7e-12 46.5 0.2 2.9 4 0 0 4 4 4 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|145590281|ref|YP_001152283.1| - 3.5e-05 22.9 1.0 6.7e-05 22.0 0.1 1.8 2 0 0 2 2 2 1 Serine dehydrogenase proteinase Band_7 PF01145.25 gi|145590282|ref|YP_001152284.1| - 9.4e-34 117.0 2.3 1.3e-33 116.5 2.3 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|145590282|ref|YP_001152284.1| - 0.0014 18.3 0.1 0.0058 16.4 0.0 1.9 2 0 0 2 2 2 1 SPFH domain-Band 7 family pPIWI_RE_REase PF18154.1 gi|145590282|ref|YP_001152284.1| - 0.053 13.5 1.1 0.13 12.2 0.2 2.0 2 0 0 2 2 2 0 REase associating with pPIWI_RE HlyIII PF03006.20 gi|145590282|ref|YP_001152284.1| - 0.2 11.3 0.6 0.27 10.9 0.6 1.2 1 0 0 1 1 1 0 Haemolysin-III related GARP PF16731.5 gi|145590283|ref|YP_001152285.1| - 0.00018 21.2 6.6 0.00021 21.0 6.6 1.1 1 0 0 1 1 1 1 Glutamic acid/alanine-rich protein of Trypanosoma V-ATPase_G_2 PF16999.5 gi|145590283|ref|YP_001152285.1| - 0.002 18.5 14.0 0.0031 17.9 11.3 2.0 1 1 1 2 2 2 1 Vacuolar (H+)-ATPase G subunit EspB PF05802.11 gi|145590283|ref|YP_001152285.1| - 0.042 13.8 7.7 0.068 13.2 7.7 1.4 1 1 0 1 1 1 0 Enterobacterial EspB protein DUF4364 PF14277.6 gi|145590283|ref|YP_001152285.1| - 0.043 13.6 8.7 0.48 10.2 4.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) Peptidase_S66 PF02016.15 gi|145590283|ref|YP_001152285.1| - 0.052 13.7 1.3 0.075 13.1 1.3 1.2 1 0 0 1 1 1 0 LD-carboxypeptidase N-terminal domain Hist_deacetyl PF00850.19 gi|145590283|ref|YP_001152285.1| - 0.094 12.2 2.1 0.11 12.0 2.1 1.1 1 0 0 1 1 1 0 Histone deacetylase domain Peptidase_M55 PF04951.13 gi|145590283|ref|YP_001152285.1| - 0.16 11.4 3.7 0.18 11.2 3.7 1.1 1 0 0 1 1 1 0 D-aminopeptidase ISG65-75 PF11727.8 gi|145590283|ref|YP_001152285.1| - 0.17 11.1 11.1 0.2 10.8 11.1 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein DivIVA PF05103.13 gi|145590283|ref|YP_001152285.1| - 0.22 11.6 15.6 0.49 10.5 15.6 1.5 1 1 0 1 1 1 0 DivIVA protein Nup54 PF13874.6 gi|145590283|ref|YP_001152285.1| - 0.37 10.9 8.4 2.3 8.3 0.8 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Prominin PF05478.11 gi|145590283|ref|YP_001152285.1| - 0.4 8.6 6.6 0.44 8.5 6.6 1.0 1 0 0 1 1 1 0 Prominin TSP_NTD PF17804.1 gi|145590283|ref|YP_001152285.1| - 0.95 9.7 8.4 1.1 9.5 8.4 1.3 1 1 0 1 1 1 0 Tail specific protease N-terminal domain DUF948 PF06103.11 gi|145590283|ref|YP_001152285.1| - 1 9.6 5.9 1.9e+02 2.4 5.5 2.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) MCU PF04678.13 gi|145590283|ref|YP_001152285.1| - 1.2 9.3 5.7 1.6 8.8 5.7 1.3 1 0 0 1 1 1 0 Mitochondrial calcium uniporter CinA_KH PF18146.1 gi|145590283|ref|YP_001152285.1| - 2.3 8.5 8.3 5 7.3 1.2 2.4 1 1 1 2 2 2 0 Damage-inducible protein CinA KH domain V_ATPase_I PF01496.19 gi|145590283|ref|YP_001152285.1| - 2.3 6.1 8.2 2.4 5.9 8.2 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family RNase_J_C PF17770.1 gi|145590283|ref|YP_001152285.1| - 2.3 9.3 8.0 7.5 7.7 7.0 2.2 1 1 1 2 2 2 0 Ribonuclease J C-terminal domain YtxH PF12732.7 gi|145590283|ref|YP_001152285.1| - 2.4 8.7 12.3 4.9 7.8 1.7 2.1 1 1 1 2 2 2 0 YtxH-like protein dCache_2 PF08269.11 gi|145590283|ref|YP_001152285.1| - 3 6.9 11.7 3.3 6.8 11.7 1.1 1 0 0 1 1 1 0 Cache domain LMBR1 PF04791.16 gi|145590283|ref|YP_001152285.1| - 6.3 5.6 6.7 6.7 5.5 6.7 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein vATP-synt_AC39 PF01992.16 gi|145590284|ref|YP_001152286.1| - 5.8e-21 75.3 2.1 6.8e-21 75.1 2.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_C PF00137.21 gi|145590285|ref|YP_001152287.1| - 1.6e-19 70.0 14.4 1.6e-19 70.0 14.4 1.6 2 0 0 2 2 2 1 ATP synthase subunit C DUF3094 PF11293.8 gi|145590285|ref|YP_001152287.1| - 0.18 11.5 0.4 0.18 11.5 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3094) AbfS_sensor PF18225.1 gi|145590286|ref|YP_001152288.1| - 0.079 12.9 0.3 0.11 12.4 0.3 1.4 1 1 0 1 1 1 0 Sensor histidine kinase (AbfS) sensor domain Peptidase_M41 PF01434.18 gi|145590286|ref|YP_001152288.1| - 0.1 12.4 0.6 0.1 12.4 0.6 1.0 1 0 0 1 1 1 0 Peptidase family M41 ATP-synt_D PF01813.17 gi|145590287|ref|YP_001152289.1| - 1.8e-38 132.4 10.1 2.1e-38 132.1 10.1 1.0 1 0 0 1 1 1 1 ATP synthase subunit D GPAT_N PF14829.6 gi|145590287|ref|YP_001152289.1| - 0.0033 17.4 0.0 0.016 15.1 0.0 2.1 1 1 1 2 2 2 1 Glycerol-3-phosphate acyltransferase N-terminal KAR9 PF08580.10 gi|145590287|ref|YP_001152289.1| - 0.04 12.5 0.4 0.046 12.3 0.2 1.3 1 1 0 1 1 1 0 Yeast cortical protein KAR9 CK2S PF15011.6 gi|145590287|ref|YP_001152289.1| - 0.097 12.6 0.6 0.92 9.4 0.2 2.2 2 0 0 2 2 2 0 Casein Kinase 2 substrate Rx_N PF18052.1 gi|145590287|ref|YP_001152289.1| - 0.14 12.4 2.8 4.7 7.6 0.2 2.6 2 1 0 2 2 2 0 Rx N-terminal domain MMR_HSR1 PF01926.23 gi|145590288|ref|YP_001152290.1| - 4.1e-16 59.1 0.1 7e-13 48.7 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|145590288|ref|YP_001152290.1| - 1.4e-11 44.6 0.0 4.3e-11 43.0 0.0 1.5 1 1 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|145590288|ref|YP_001152290.1| - 8e-08 32.0 0.4 0.00032 20.3 0.1 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|145590288|ref|YP_001152290.1| - 2.2e-07 31.1 0.0 0.0016 18.5 0.0 3.1 2 1 1 3 3 3 2 Dynamin family GTP_EFTU PF00009.27 gi|145590288|ref|YP_001152290.1| - 1.8e-06 27.7 0.1 2.2e-05 24.1 0.0 2.2 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|145590288|ref|YP_001152290.1| - 0.00046 19.8 0.1 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain Ras PF00071.22 gi|145590288|ref|YP_001152290.1| - 0.0014 18.2 0.0 1.8 8.2 0.0 2.2 2 0 0 2 2 2 2 Ras family PduV-EutP PF10662.9 gi|145590288|ref|YP_001152290.1| - 0.0069 16.1 0.0 0.085 12.6 0.0 2.3 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|145590288|ref|YP_001152290.1| - 0.01 15.3 0.1 0.44 10.0 0.0 2.4 1 1 1 2 2 2 0 ADP-ribosylation factor family AAA_18 PF13238.6 gi|145590288|ref|YP_001152290.1| - 0.023 15.2 0.0 0.055 14.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|145590288|ref|YP_001152290.1| - 0.026 14.5 0.0 0.056 13.5 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_16 PF13191.6 gi|145590288|ref|YP_001152290.1| - 0.038 14.4 0.1 0.13 12.7 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain AIG1 PF04548.16 gi|145590288|ref|YP_001152290.1| - 0.059 12.7 0.0 0.29 10.4 0.0 1.9 2 0 0 2 2 2 0 AIG1 family Toprim_3 PF13362.6 gi|145590288|ref|YP_001152290.1| - 0.11 12.8 0.0 0.46 10.9 0.0 1.9 1 1 1 2 2 2 0 Toprim domain DUF2120 PF09893.9 gi|145590288|ref|YP_001152290.1| - 0.14 12.2 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) Frizzled PF01534.17 gi|145590289|ref|YP_001152291.1| - 0.11 11.6 0.8 0.14 11.2 0.8 1.2 1 0 0 1 1 1 0 Frizzled/Smoothened family membrane region NERD PF08378.11 gi|145590290|ref|YP_001152292.1| - 3.8e-06 27.3 0.0 5.6e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Nuclease-related domain Mrr_cat PF04471.12 gi|145590290|ref|YP_001152292.1| - 1.1e-05 25.4 0.0 1.5e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Restriction endonuclease UPF0102 PF02021.17 gi|145590290|ref|YP_001152292.1| - 0.021 15.1 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 Pyr_redox_2 PF07992.14 gi|145590291|ref|YP_001152293.1| - 2.9e-08 33.3 0.8 4.7e-07 29.3 0.8 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|145590291|ref|YP_001152293.1| - 1.6e-06 27.5 0.5 0.0013 17.9 0.2 3.3 2 1 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|145590291|ref|YP_001152293.1| - 2.2e-05 24.6 1.0 0.0046 17.2 0.4 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|145590291|ref|YP_001152293.1| - 4.3e-05 22.9 1.4 0.00077 18.8 0.4 2.8 3 0 0 3 3 3 1 FAD binding domain Pyr_redox PF00070.27 gi|145590291|ref|YP_001152293.1| - 9.6e-05 22.9 1.4 0.17 12.4 0.3 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145590291|ref|YP_001152293.1| - 0.00015 21.1 0.3 0.094 11.9 0.0 2.7 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|145590291|ref|YP_001152293.1| - 0.025 14.0 0.4 0.17 11.2 0.2 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|145590291|ref|YP_001152293.1| - 0.043 12.5 0.4 1 8.0 0.1 2.7 2 1 1 3 3 3 0 HI0933-like protein GIDA PF01134.22 gi|145590291|ref|YP_001152293.1| - 0.053 12.6 0.3 0.22 10.5 0.4 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A DUF5505 PF17610.2 gi|145590291|ref|YP_001152293.1| - 0.086 12.8 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5505) PGM_PMM_I PF02878.16 gi|145590292|ref|YP_001152294.1| - 6.4e-28 97.2 0.0 1.2e-27 96.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|145590292|ref|YP_001152294.1| - 2.9e-19 69.3 0.0 4.7e-19 68.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|145590292|ref|YP_001152294.1| - 5.1e-19 68.8 0.1 1.3e-18 67.5 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|145590292|ref|YP_001152294.1| - 4.3e-13 49.2 0.5 1.5e-12 47.5 0.5 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF763 PF05559.11 gi|145590293|ref|YP_001152295.1| - 8.5e-117 389.8 0.0 1e-116 389.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) OMPdecase PF00215.24 gi|145590294|ref|YP_001152296.1| - 2.5e-16 60.0 0.2 2.8e-15 56.5 0.2 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family OTCace_N PF02729.21 gi|145590295|ref|YP_001152297.1| - 4.6e-45 153.3 0.0 7e-45 152.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|145590295|ref|YP_001152297.1| - 3.1e-26 92.3 0.0 4.9e-26 91.7 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Acetyltransf_1 PF00583.25 gi|145590296|ref|YP_001152298.1| - 3.8e-19 69.1 0.0 4.5e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|145590296|ref|YP_001152298.1| - 1.8e-11 44.3 0.1 2.9e-11 43.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|145590296|ref|YP_001152298.1| - 5.1e-10 39.4 0.1 8.9e-10 38.6 0.1 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|145590296|ref|YP_001152298.1| - 2e-09 37.6 0.2 3.5e-09 36.8 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|145590296|ref|YP_001152298.1| - 4.2e-08 33.1 0.1 7.1e-08 32.3 0.1 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|145590296|ref|YP_001152298.1| - 0.00026 21.2 0.1 0.00058 20.0 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|145590296|ref|YP_001152298.1| - 0.00026 20.7 0.0 0.00046 19.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|145590296|ref|YP_001152298.1| - 0.00035 21.3 0.0 0.00049 20.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|145590296|ref|YP_001152298.1| - 0.048 13.3 0.0 0.07 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) GNAT_acetyltran PF12746.7 gi|145590296|ref|YP_001152298.1| - 0.14 11.7 0.0 0.32 10.5 0.0 1.7 1 1 0 1 1 1 0 GNAT acetyltransferase Thioredoxin_2 PF13098.6 gi|145590296|ref|YP_001152298.1| - 0.15 12.5 0.0 0.28 11.7 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin-like domain Tmemb_170 PF10190.9 gi|145590297|ref|YP_001152299.1| - 0.023 15.0 5.6 0.023 15.0 5.6 2.8 2 0 0 2 2 2 0 Putative transmembrane protein 170 T2SSE PF00437.20 gi|145590298|ref|YP_001152300.1| - 1.4e-34 119.4 0.0 2.1e-34 118.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|145590298|ref|YP_001152300.1| - 0.00023 20.9 0.0 0.00054 19.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|145590298|ref|YP_001152300.1| - 0.00033 20.2 0.0 0.00063 19.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_28 PF13521.6 gi|145590298|ref|YP_001152300.1| - 0.0038 17.5 0.7 0.016 15.5 0.1 2.1 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|145590298|ref|YP_001152300.1| - 0.0038 16.6 0.1 0.008 15.6 0.1 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_19 PF13245.6 gi|145590298|ref|YP_001152300.1| - 0.005 17.2 0.0 0.015 15.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|145590298|ref|YP_001152300.1| - 0.0056 17.2 0.0 0.014 15.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|145590298|ref|YP_001152300.1| - 0.007 16.6 0.0 0.016 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|145590298|ref|YP_001152300.1| - 0.014 15.9 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|145590298|ref|YP_001152300.1| - 0.029 14.5 0.0 0.057 13.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|145590298|ref|YP_001152300.1| - 0.036 14.0 0.0 0.061 13.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|145590298|ref|YP_001152300.1| - 0.039 13.9 0.1 0.069 13.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.9 gi|145590298|ref|YP_001152300.1| - 0.04 13.7 0.1 0.07 12.9 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|145590298|ref|YP_001152300.1| - 0.058 13.8 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain Mg_chelatase PF01078.21 gi|145590298|ref|YP_001152300.1| - 0.062 12.7 0.1 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.6 gi|145590298|ref|YP_001152300.1| - 0.071 12.8 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|145590298|ref|YP_001152300.1| - 0.071 12.0 0.1 0.11 11.4 0.1 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.19 gi|145590298|ref|YP_001152300.1| - 0.095 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Septin PF00735.18 gi|145590298|ref|YP_001152300.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Septin IstB_IS21 PF01695.17 gi|145590298|ref|YP_001152300.1| - 0.14 11.9 0.0 0.36 10.5 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein TGT PF01702.18 gi|145590300|ref|YP_001152302.1| - 8.4e-61 206.1 0.0 1.1e-60 205.7 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|145590300|ref|YP_001152302.1| - 5.3e-08 32.9 0.1 2e-07 31.0 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|145590301|ref|YP_001152303.1| - 2.4e-33 115.9 0.0 2.8e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF3618 PF12277.8 gi|145590301|ref|YP_001152303.1| - 2.6 8.4 8.8 4.7 7.6 8.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) TFIIE_alpha PF02002.17 gi|145590302|ref|YP_001152304.1| - 2.8e-07 30.4 2.5 4.6e-07 29.7 2.5 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Phage_rep_org_N PF09681.10 gi|145590302|ref|YP_001152304.1| - 0.0055 16.6 0.3 0.0055 16.6 0.3 1.6 2 1 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF4428 PF14471.6 gi|145590302|ref|YP_001152304.1| - 0.01 15.7 0.1 0.99 9.4 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) HTH_Crp_2 PF13545.6 gi|145590302|ref|YP_001152304.1| - 0.03 14.3 1.2 0.03 14.3 1.2 2.2 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|145590302|ref|YP_001152304.1| - 0.03 14.0 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF3140 PF11338.8 gi|145590302|ref|YP_001152304.1| - 0.044 14.2 0.1 0.077 13.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3140) HTH_11 PF08279.12 gi|145590302|ref|YP_001152304.1| - 0.048 13.6 0.9 0.11 12.5 0.9 1.7 1 1 0 1 1 1 0 HTH domain Rio2_N PF09202.11 gi|145590302|ref|YP_001152304.1| - 0.074 13.3 0.4 0.21 11.9 0.2 1.7 1 1 1 2 2 2 0 Rio2, N-terminal Prok-RING_4 PF14447.6 gi|145590302|ref|YP_001152304.1| - 0.08 12.8 0.1 0.14 12.1 0.1 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 DNA_ligase_ZBD PF03119.16 gi|145590302|ref|YP_001152304.1| - 0.1 12.7 3.3 0.26 11.3 0.1 2.5 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain HTH_9 PF08221.11 gi|145590302|ref|YP_001152304.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.7 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Dimerisation2 PF16864.5 gi|145590302|ref|YP_001152304.1| - 0.13 12.2 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain TrmB PF01978.19 gi|145590302|ref|YP_001152304.1| - 0.15 12.0 1.0 0.27 11.1 0.1 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zinc_ribbon_4 PF13717.6 gi|145590302|ref|YP_001152304.1| - 0.21 11.5 1.6 2.1 8.3 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145590302|ref|YP_001152304.1| - 0.46 10.0 3.9 4.1 7.0 4.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|145590302|ref|YP_001152304.1| - 1.8 8.1 4.9 2.3 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain GTP-bdg_M PF16360.5 gi|145590303|ref|YP_001152305.1| - 2.3e-16 60.2 2.5 4.7e-16 59.1 2.5 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|145590303|ref|YP_001152305.1| - 4.8e-16 58.9 0.0 9.7e-16 57.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.6 gi|145590303|ref|YP_001152305.1| - 9.9e-16 58.2 0.0 3.4e-15 56.5 0.0 2.0 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal GTP_EFTU PF00009.27 gi|145590303|ref|YP_001152305.1| - 2.6e-06 27.1 0.0 0.0046 16.5 0.0 2.5 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain FeoB_N PF02421.18 gi|145590303|ref|YP_001152305.1| - 2.1e-05 24.1 0.0 3.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B cobW PF02492.19 gi|145590303|ref|YP_001152305.1| - 0.00022 20.9 0.6 0.13 11.8 0.1 2.4 1 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|145590303|ref|YP_001152305.1| - 0.00044 20.2 0.0 0.61 10.0 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|145590303|ref|YP_001152305.1| - 0.00051 20.0 0.0 0.0016 18.5 0.0 1.7 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|145590303|ref|YP_001152305.1| - 0.0052 16.5 0.1 0.37 10.5 0.0 2.6 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Septin PF00735.18 gi|145590303|ref|YP_001152305.1| - 0.016 14.5 0.0 4.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Septin SRPRB PF09439.10 gi|145590303|ref|YP_001152305.1| - 0.023 14.1 0.0 0.038 13.4 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RE_NgoPII PF09521.10 gi|145590303|ref|YP_001152305.1| - 0.038 13.2 0.2 0.07 12.3 0.2 1.3 1 0 0 1 1 1 0 NgoPII restriction endonuclease Roc PF08477.13 gi|145590303|ref|YP_001152305.1| - 0.038 14.2 0.0 0.26 11.5 0.0 2.1 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_28 PF13521.6 gi|145590303|ref|YP_001152305.1| - 0.073 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain Ras PF00071.22 gi|145590303|ref|YP_001152305.1| - 0.11 12.1 0.0 0.3 10.7 0.0 1.7 1 1 0 1 1 1 0 Ras family Dynamin_N PF00350.23 gi|145590303|ref|YP_001152305.1| - 0.14 12.2 0.1 0.57 10.2 0.0 1.9 1 1 1 2 2 2 0 Dynamin family AAA_14 PF13173.6 gi|145590303|ref|YP_001152305.1| - 0.14 12.2 0.0 0.5 10.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|145590303|ref|YP_001152305.1| - 0.15 12.1 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE HTH_3 PF01381.22 gi|145590304|ref|YP_001152306.1| - 8.2e-12 45.0 0.5 1.5e-11 44.1 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|145590304|ref|YP_001152306.1| - 8.3e-09 35.7 1.0 8.3e-09 35.7 1.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|145590304|ref|YP_001152306.1| - 9.8e-06 25.5 0.2 4.8e-05 23.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|145590304|ref|YP_001152306.1| - 0.00023 20.9 0.3 0.00048 19.9 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Arc_trans_TRASH PF08394.10 gi|145590304|ref|YP_001152306.1| - 0.005 17.1 1.7 0.0081 16.5 1.7 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain MqsA_antitoxin PF15731.5 gi|145590304|ref|YP_001152306.1| - 0.0055 16.8 0.4 0.021 15.0 0.0 1.9 2 0 0 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-RING_10 PF16685.5 gi|145590304|ref|YP_001152306.1| - 0.2 11.8 0.2 0.3 11.3 0.2 1.3 1 0 0 1 1 1 0 zinc RING finger of MSL2 TGT_C2 PF14810.6 gi|145590305|ref|YP_001152307.1| - 9.4e-14 51.3 0.0 1.4e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|145590305|ref|YP_001152307.1| - 2e-13 50.1 0.6 3.3e-13 49.4 0.6 1.4 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|145590305|ref|YP_001152307.1| - 7.9e-05 22.8 0.7 0.00017 21.8 0.1 1.8 2 1 0 2 2 2 1 UPF0113 PUA domain FBPase PF00316.20 gi|145590305|ref|YP_001152307.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain Sen15 PF09631.10 gi|145590307|ref|YP_001152309.1| - 0.0031 17.8 0.1 0.0041 17.4 0.1 1.5 1 1 0 1 1 1 1 Sen15 protein LSM PF01423.22 gi|145590308|ref|YP_001152310.1| - 5.1e-22 77.3 0.2 5.8e-22 77.2 0.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|145590308|ref|YP_001152310.1| - 0.00084 19.4 0.0 0.00095 19.3 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF1320 PF07030.12 gi|145590308|ref|YP_001152310.1| - 0.031 14.4 0.0 0.039 14.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1320) DUF150_C PF17384.2 gi|145590308|ref|YP_001152310.1| - 0.044 13.9 0.1 0.059 13.5 0.1 1.3 1 1 0 1 1 1 0 RimP C-terminal SH3 domain Hfq PF17209.3 gi|145590308|ref|YP_001152310.1| - 0.05 13.3 0.1 0.061 13.0 0.1 1.2 1 0 0 1 1 1 0 Hfq protein TFIIA_gamma_N PF02268.16 gi|145590308|ref|YP_001152310.1| - 0.17 12.0 0.3 0.53 10.3 0.3 1.8 1 1 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit, helical domain Ribosomal_L37e PF01907.19 gi|145590309|ref|YP_001152311.1| - 1.2e-22 79.8 14.9 1.2e-22 79.7 14.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|145590309|ref|YP_001152311.1| - 0.0014 18.6 1.7 0.0016 18.5 1.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon DUF2752 PF10825.8 gi|145590309|ref|YP_001152311.1| - 0.0037 17.3 1.2 0.76 9.9 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2752) Zn_Tnp_IS91 PF14319.6 gi|145590309|ref|YP_001152311.1| - 0.018 15.1 3.8 0.023 14.7 3.8 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain NOB1_Zn_bind PF08772.11 gi|145590309|ref|YP_001152311.1| - 0.018 15.2 3.9 0.025 14.7 3.9 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like SelR PF01641.18 gi|145590309|ref|YP_001152311.1| - 0.029 14.4 0.4 0.033 14.3 0.4 1.1 1 0 0 1 1 1 0 SelR domain GcpE PF04551.14 gi|145590309|ref|YP_001152311.1| - 0.042 12.9 0.4 0.047 12.8 0.4 1.1 1 0 0 1 1 1 0 GcpE protein zf-NADH-PPase PF09297.11 gi|145590309|ref|YP_001152311.1| - 0.042 13.5 5.7 0.42 10.3 1.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145590309|ref|YP_001152311.1| - 0.047 13.1 5.9 0.92 9.0 6.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|145590309|ref|YP_001152311.1| - 0.086 13.0 2.2 4.4 7.6 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.6 gi|145590309|ref|YP_001152311.1| - 0.093 12.5 5.6 0.24 11.2 5.6 1.6 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|145590309|ref|YP_001152311.1| - 0.12 12.4 0.8 0.14 12.2 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MraY_sig1 PF10555.9 gi|145590309|ref|YP_001152311.1| - 0.23 11.1 1.3 0.32 10.6 1.3 1.2 1 0 0 1 1 1 0 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DUF1610 PF07754.11 gi|145590309|ref|YP_001152311.1| - 0.31 11.0 4.1 9.1 6.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) YhfH PF14149.6 gi|145590309|ref|YP_001152311.1| - 0.36 10.9 3.9 1.7 8.7 0.4 2.1 1 1 1 2 2 2 0 YhfH-like protein MarC PF01914.17 gi|145590310|ref|YP_001152312.1| - 1.3e-32 112.9 18.8 1.6e-32 112.5 18.8 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein ParA PF10609.9 gi|145590311|ref|YP_001152313.1| - 5.8e-84 281.4 0.0 6.8e-84 281.2 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|145590311|ref|YP_001152313.1| - 1.2e-09 38.3 0.0 4.7e-09 36.4 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|145590311|ref|YP_001152313.1| - 0.00012 21.4 2.8 0.00025 20.3 2.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|145590311|ref|YP_001152313.1| - 0.0016 18.4 0.6 0.0033 17.4 0.6 1.7 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|145590311|ref|YP_001152313.1| - 0.0049 16.4 0.2 0.039 13.4 0.2 2.1 2 1 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|145590311|ref|YP_001152313.1| - 0.0072 15.6 0.1 0.011 15.0 0.1 1.4 1 1 0 1 1 1 1 ATPase MipZ MeaB PF03308.16 gi|145590311|ref|YP_001152313.1| - 0.031 13.3 0.4 0.054 12.5 0.4 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_26 PF13500.6 gi|145590311|ref|YP_001152313.1| - 0.043 13.6 0.5 2.7 7.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|145590311|ref|YP_001152313.1| - 0.062 13.2 0.1 0.11 12.4 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NB-ARC PF00931.22 gi|145590311|ref|YP_001152313.1| - 0.094 11.9 0.2 0.16 11.1 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|145590311|ref|YP_001152313.1| - 0.16 11.5 0.2 0.16 11.5 0.2 1.9 3 0 0 3 3 3 0 AAA domain dCMP_cyt_deam_1 PF00383.23 gi|145590312|ref|YP_001152314.1| - 6e-18 64.6 0.2 7.1e-18 64.4 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|145590312|ref|YP_001152314.1| - 2.1e-10 40.9 0.3 6.9e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|145590312|ref|YP_001152314.1| - 0.00067 19.3 1.1 0.095 12.3 0.2 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases DUF2007 PF09413.10 gi|145590313|ref|YP_001152315.1| - 0.011 15.9 0.0 0.025 14.7 0.0 1.6 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein EndIII_4Fe-2S PF10576.9 gi|145590313|ref|YP_001152315.1| - 0.027 14.8 3.0 0.049 14.0 3.0 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III EccE PF11203.8 gi|145590313|ref|YP_001152315.1| - 0.1 13.0 1.0 1.5 9.2 0.1 2.4 2 0 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE DUF3294 PF07957.11 gi|145590313|ref|YP_001152315.1| - 0.15 11.8 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3294) adh_short_C2 PF13561.6 gi|145590314|ref|YP_001152316.1| - 1.1e-52 178.9 0.0 1.6e-52 178.4 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145590314|ref|YP_001152316.1| - 3.4e-42 144.1 0.0 4.3e-42 143.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145590314|ref|YP_001152316.1| - 9.4e-08 32.2 0.0 1.7e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 KR domain Spore_IV_A PF09547.10 gi|145590314|ref|YP_001152316.1| - 0.046 12.7 0.0 0.067 12.1 0.0 1.2 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) DUF460 PF04312.13 gi|145590314|ref|YP_001152316.1| - 0.092 12.4 0.6 0.16 11.7 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF460) SHMT PF00464.19 gi|145590315|ref|YP_001152317.1| - 8.6e-74 248.5 0.1 1.2e-73 248.1 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|145590315|ref|YP_001152317.1| - 1.4e-07 31.1 0.0 2e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|145590315|ref|YP_001152317.1| - 2.8e-07 30.0 0.0 7.7e-07 28.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|145590315|ref|YP_001152317.1| - 3.3e-05 23.4 0.1 0.00031 20.2 0.1 2.2 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|145590315|ref|YP_001152317.1| - 0.0096 14.5 0.1 0.023 13.2 0.1 1.7 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|145590315|ref|YP_001152317.1| - 0.083 11.9 0.0 0.3 10.1 0.0 1.9 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|145590315|ref|YP_001152317.1| - 0.092 11.7 0.0 0.59 9.0 0.0 2.1 1 1 0 1 1 1 0 Aminotransferase class-V MoaC PF01967.21 gi|145590316|ref|YP_001152318.1| - 6.6e-17 61.9 0.0 5.9e-10 39.4 0.0 3.3 2 1 1 3 3 3 3 MoaC family TF_Zn_Ribbon PF08271.12 gi|145590317|ref|YP_001152319.1| - 7.3e-07 28.6 0.3 1.3e-06 27.7 0.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIS_C PF01096.18 gi|145590317|ref|YP_001152319.1| - 0.0004 20.2 5.5 0.089 12.7 1.8 2.4 1 1 1 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|145590317|ref|YP_001152319.1| - 0.0031 17.6 2.9 0.34 11.1 0.1 2.6 3 0 0 3 3 2 1 Zinc ribbon domain zf-IS66 PF13005.7 gi|145590317|ref|YP_001152319.1| - 0.0053 17.1 0.6 0.37 11.2 0.3 2.7 2 1 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.7 gi|145590317|ref|YP_001152319.1| - 0.0056 16.6 1.8 0.0056 16.6 1.8 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|145590317|ref|YP_001152319.1| - 0.0087 16.1 0.1 0.012 15.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.11 gi|145590317|ref|YP_001152319.1| - 0.0089 15.9 1.3 0.015 15.2 1.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-3CxxC PF13695.6 gi|145590317|ref|YP_001152319.1| - 0.021 15.3 0.0 0.03 14.8 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding domain zf_UBZ PF18439.1 gi|145590317|ref|YP_001152319.1| - 0.038 13.6 1.7 2 8.1 0.0 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DZR PF12773.7 gi|145590317|ref|YP_001152319.1| - 0.042 13.9 0.5 0.099 12.7 0.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|145590317|ref|YP_001152319.1| - 0.047 13.1 2.3 4.7 6.8 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RPA_interact_C PF14768.6 gi|145590317|ref|YP_001152319.1| - 0.066 13.8 0.0 0.077 13.6 0.0 1.4 1 1 0 1 1 1 0 Replication protein A interacting C-terminal zf-RRN7 PF11781.8 gi|145590317|ref|YP_001152319.1| - 0.078 12.7 2.3 1.5 8.6 0.5 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Nudix_N_2 PF14803.6 gi|145590317|ref|YP_001152319.1| - 0.088 12.7 1.8 0.6 10.1 1.9 2.2 1 1 0 1 1 1 0 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|145590317|ref|YP_001152319.1| - 0.12 12.2 3.4 46 3.9 0.1 2.3 1 1 0 1 1 1 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|145590317|ref|YP_001152319.1| - 0.12 12.4 1.3 0.85 9.6 1.3 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DNA_RNApol_7kD PF03604.13 gi|145590317|ref|YP_001152319.1| - 0.15 11.7 5.0 1.1 9.0 5.0 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.6 gi|145590317|ref|YP_001152319.1| - 0.25 11.3 3.6 2.1 8.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|145590317|ref|YP_001152319.1| - 0.36 10.5 3.3 4.3 7.1 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|145590317|ref|YP_001152319.1| - 0.53 10.3 2.1 25 4.9 0.1 2.6 1 1 2 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA UPF0547 PF10571.9 gi|145590317|ref|YP_001152319.1| - 0.8 9.8 5.1 2.9 8.0 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Rubredoxin_2 PF18073.1 gi|145590317|ref|YP_001152319.1| - 0.98 9.2 6.6 1.1 9.1 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain FMN_dh PF01070.18 gi|145590318|ref|YP_001152320.1| - 2e-20 73.2 4.3 2.5e-19 69.5 4.3 2.0 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|145590318|ref|YP_001152320.1| - 0.0011 18.0 4.3 0.021 13.8 3.7 2.8 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|145590318|ref|YP_001152320.1| - 0.0032 16.6 3.4 0.009 15.2 1.7 2.2 2 1 0 2 2 2 1 Conserved region in glutamate synthase Ribosomal_L2_C PF03947.18 gi|145590319|ref|YP_001152321.1| - 2.3e-40 137.7 2.7 3.3e-40 137.2 2.7 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|145590319|ref|YP_001152321.1| - 3.6e-11 42.9 0.0 1e-10 41.4 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S17e PF00833.18 gi|145590320|ref|YP_001152322.1| - 9.6e-19 67.5 0.2 1e-18 67.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 FKBP26_C PF18046.1 gi|145590321|ref|YP_001152323.1| - 7.7e-13 48.4 0.0 1.5e-12 47.5 0.0 1.5 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|145590321|ref|YP_001152323.1| - 1.3e-05 25.5 0.0 2.9e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CorC_HlyC PF03471.17 gi|145590321|ref|YP_001152323.1| - 0.022 14.8 0.3 2.1 8.4 0.0 2.9 3 0 0 3 3 3 0 Transporter associated domain Leu_leader PF08054.11 gi|145590321|ref|YP_001152323.1| - 0.12 12.0 0.5 0.28 10.8 0.5 1.5 1 0 0 1 1 1 0 Leucine operon leader peptide Proteasome PF00227.26 gi|145590322|ref|YP_001152324.1| - 1.9e-51 174.3 0.5 2.1e-51 174.1 0.5 1.0 1 0 0 1 1 1 1 Proteasome subunit Enolase_C PF00113.22 gi|145590323|ref|YP_001152325.1| - 7.6e-56 189.5 0.0 1e-55 189.1 0.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|145590323|ref|YP_001152325.1| - 2.5e-26 92.4 0.0 4.2e-26 91.7 0.0 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|145590323|ref|YP_001152325.1| - 1e-08 35.1 0.0 1.7e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|145590323|ref|YP_001152325.1| - 0.007 15.6 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus ABC_membrane PF00664.23 gi|145590323|ref|YP_001152325.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region HTH_1 PF00126.27 gi|145590324|ref|YP_001152326.1| - 8.9e-15 54.4 0.0 1.3e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|145590324|ref|YP_001152326.1| - 0.00073 19.5 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|145590324|ref|YP_001152326.1| - 0.0033 17.3 0.1 0.015 15.2 0.1 1.9 1 1 0 1 1 1 1 HTH domain HTH_8 PF02954.19 gi|145590324|ref|YP_001152326.1| - 0.0079 16.0 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_28 PF13518.6 gi|145590324|ref|YP_001152326.1| - 0.03 14.5 0.0 0.051 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|145590324|ref|YP_001152326.1| - 0.031 14.5 0.1 0.071 13.4 0.1 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_23 PF13384.6 gi|145590324|ref|YP_001152326.1| - 0.042 13.6 0.0 0.089 12.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF505 PF04458.12 gi|145590324|ref|YP_001152326.1| - 0.053 11.9 0.0 0.72 8.1 0.0 2.0 1 1 2 3 3 3 0 Protein of unknown function (DUF505) Radical_SAM PF04055.21 gi|145590325|ref|YP_001152327.1| - 1.4e-23 84.1 0.0 2.6e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|145590325|ref|YP_001152327.1| - 6.5e-23 81.1 0.0 9.5e-23 80.5 0.0 1.2 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_14 PF13394.6 gi|145590325|ref|YP_001152327.1| - 0.00017 21.7 0.0 0.00046 20.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain HMGL-like PF00682.19 gi|145590325|ref|YP_001152327.1| - 0.00019 21.1 0.0 0.00027 20.6 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Fer4_12 PF13353.6 gi|145590325|ref|YP_001152327.1| - 0.00065 20.0 0.3 0.0022 18.3 0.0 2.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Pkinase PF00069.25 gi|145590326|ref|YP_001152328.1| - 4.5e-40 137.7 0.0 1.4e-39 136.0 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|145590326|ref|YP_001152328.1| - 2.5e-22 79.4 0.0 4.4e-22 78.6 0.0 1.5 1 1 0 1 1 1 1 Protein tyrosine kinase FTA2 PF13095.6 gi|145590326|ref|YP_001152328.1| - 0.0009 18.9 0.1 0.1 12.2 0.0 2.1 2 0 0 2 2 2 2 Kinetochore Sim4 complex subunit FTA2 Kdo PF06293.14 gi|145590326|ref|YP_001152328.1| - 0.03 13.7 0.0 0.044 13.1 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-like PF14531.6 gi|145590326|ref|YP_001152328.1| - 0.059 12.7 0.0 0.08 12.2 0.0 1.2 1 0 0 1 1 1 0 Kinase-like Pox_ser-thr_kin PF05445.11 gi|145590326|ref|YP_001152328.1| - 0.087 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Poxvirus serine/threonine protein kinase APH PF01636.23 gi|145590326|ref|YP_001152328.1| - 0.15 12.0 0.1 1.6 8.6 0.1 1.9 1 1 1 2 2 2 0 Phosphotransferase enzyme family FHA PF00498.26 gi|145590327|ref|YP_001152329.1| - 1.6e-13 50.8 0.1 2.2e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|145590327|ref|YP_001152329.1| - 2.6e-12 46.9 0.0 3.9e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zf-RanBP PF00641.18 gi|145590327|ref|YP_001152329.1| - 7.7e-06 25.1 0.6 1.1e-05 24.7 0.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zinc_ribbon_2 PF13240.6 gi|145590327|ref|YP_001152329.1| - 2.5e-05 23.8 1.5 4e-05 23.2 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|145590327|ref|YP_001152329.1| - 0.0016 17.7 1.2 0.003 16.9 1.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|145590327|ref|YP_001152329.1| - 0.0022 18.0 0.4 0.0034 17.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zf_RING PF16744.5 gi|145590327|ref|YP_001152329.1| - 0.016 15.3 0.2 0.026 14.6 0.2 1.3 1 0 0 1 1 1 0 KIAA1045 RING finger Rubredoxin PF00301.20 gi|145590327|ref|YP_001152329.1| - 0.023 14.7 1.0 1.4 9.0 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin zf-tcix PF14952.6 gi|145590327|ref|YP_001152329.1| - 0.029 14.0 1.2 0.1 12.2 1.2 1.9 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding TF_Zn_Ribbon PF08271.12 gi|145590327|ref|YP_001152329.1| - 0.098 12.2 1.6 0.21 11.1 1.6 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|145590327|ref|YP_001152329.1| - 0.38 10.8 1.8 0.53 10.3 1.3 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-Sec23_Sec24 PF04810.15 gi|145590327|ref|YP_001152329.1| - 1 9.5 3.9 1.4 9.1 0.2 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zf-ISL3 PF14690.6 gi|145590327|ref|YP_001152329.1| - 4.4 8.0 6.5 2.4e+02 2.5 6.1 3.1 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S2 PF00318.20 gi|145590328|ref|YP_001152330.1| - 1e-24 87.0 0.0 7.6e-17 61.3 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 SRPRB PF09439.10 gi|145590328|ref|YP_001152330.1| - 0.031 13.7 0.0 0.044 13.2 0.0 1.1 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit PHP PF02811.19 gi|145590328|ref|YP_001152330.1| - 0.061 13.6 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 PHP domain Memo PF01875.17 gi|145590329|ref|YP_001152331.1| - 4.1e-75 252.4 0.0 4.6e-75 252.2 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|145590329|ref|YP_001152331.1| - 1.2e-05 24.5 0.0 2.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase PK PF00224.21 gi|145590330|ref|YP_001152332.1| - 1.7e-66 224.5 0.0 2.1e-66 224.2 0.0 1.0 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|145590330|ref|YP_001152332.1| - 6.7e-11 42.4 0.0 2.9e-10 40.4 0.0 2.2 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain Glyco_tranf_2_2 PF10111.9 gi|145590330|ref|YP_001152332.1| - 0.11 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 COG2 PF06148.11 gi|145590330|ref|YP_001152332.1| - 0.27 11.3 1.0 0.45 10.6 0.4 1.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Beta-Casp PF10996.8 gi|145590331|ref|YP_001152333.1| - 2.3e-24 85.8 0.0 8.8e-24 83.9 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain RMMBL PF07521.12 gi|145590331|ref|YP_001152333.1| - 2.1e-16 59.6 0.1 6.8e-16 58.0 0.1 1.9 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|145590331|ref|YP_001152333.1| - 8.3e-16 58.0 0.0 1.6e-15 57.0 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain KH_7 PF17214.3 gi|145590331|ref|YP_001152333.1| - 3.9e-12 45.9 1.2 2e-11 43.7 0.2 2.7 2 0 0 2 2 2 1 KH domain Lactamase_B_2 PF12706.7 gi|145590331|ref|YP_001152333.1| - 5.8e-11 42.3 0.0 1.2e-10 41.3 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145590331|ref|YP_001152333.1| - 6.7e-11 42.6 0.2 5.5e-10 39.6 0.2 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|145590331|ref|YP_001152333.1| - 0.14 12.0 0.0 0.53 10.2 0.0 1.9 1 0 0 1 1 1 0 Beta-lactamase superfamily domain tRNA-synt_1e PF01406.19 gi|145590332|ref|YP_001152334.1| - 5.9e-113 377.2 0.0 1.1e-112 376.4 0.0 1.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|145590332|ref|YP_001152334.1| - 4.1e-10 39.0 0.1 4.4e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|145590332|ref|YP_001152334.1| - 2.5e-08 32.7 0.0 1.7e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|145590332|ref|YP_001152334.1| - 5.7e-08 33.1 0.0 2.3e-07 31.2 0.0 2.1 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|145590332|ref|YP_001152334.1| - 2.4e-07 30.0 0.0 0.00028 19.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) MIEAP PF16026.5 gi|145590332|ref|YP_001152334.1| - 0.047 13.9 0.0 0.46 10.7 0.0 2.3 1 1 1 2 2 2 0 Mitochondria-eating protein tRNA-synt_1c PF00749.21 gi|145590332|ref|YP_001152334.1| - 0.097 11.5 0.3 0.71 8.7 0.1 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain DUF3235 PF11574.8 gi|145590332|ref|YP_001152334.1| - 0.24 12.3 0.5 5.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3235) Asp_protease_2 PF13650.6 gi|145590333|ref|YP_001152335.1| - 2.7e-08 34.3 0.0 3.6e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|145590333|ref|YP_001152335.1| - 6.2e-07 29.9 0.0 9.9e-07 29.2 0.0 1.3 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|145590333|ref|YP_001152335.1| - 0.0031 17.8 0.0 0.0043 17.3 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease Asp_protease_2 PF13650.6 gi|145590334|ref|YP_001152336.1| - 0.015 15.9 0.0 0.015 15.9 0.0 1.1 1 0 0 1 1 1 0 Aspartyl protease gag-asp_proteas PF13975.6 gi|145590334|ref|YP_001152336.1| - 0.029 14.9 0.0 0.036 14.6 0.0 1.1 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease CarboxypepD_reg PF13620.6 gi|145590337|ref|YP_001152339.1| - 1.2e-06 28.7 24.3 0.046 14.0 1.7 8.0 7 1 0 7 7 7 3 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|145590337|ref|YP_001152339.1| - 0.0079 16.2 0.5 0.0079 16.2 0.5 7.3 10 0 0 10 10 10 1 Bacterial Ig-like domain (group 1) Imm7 PF15585.6 gi|145590337|ref|YP_001152339.1| - 0.0097 16.2 0.0 8.9 6.6 0.0 2.7 2 0 0 2 2 2 2 Immunity protein 7 PEGA PF08308.11 gi|145590337|ref|YP_001152339.1| - 0.057 13.3 3.3 0.11 12.4 0.3 3.2 2 0 0 2 2 2 0 PEGA domain AMMECR1 PF01871.17 gi|145590338|ref|YP_001152340.1| - 3e-06 26.9 0.0 4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 DUF3809 PF12723.7 gi|145590338|ref|YP_001152340.1| - 0.045 14.0 0.0 0.089 13.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3809) DUF1525 PF07511.11 gi|145590339|ref|YP_001152341.1| - 0.0051 16.9 0.4 0.007 16.5 0.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1525) Thioredoxin_3 PF13192.6 gi|145590339|ref|YP_001152341.1| - 0.01 15.8 0.1 0.027 14.5 0.1 1.6 1 0 0 1 1 1 0 Thioredoxin domain CYTH PF01928.21 gi|145590340|ref|YP_001152342.1| - 6.1e-36 124.0 1.5 6.9e-36 123.8 1.5 1.0 1 0 0 1 1 1 1 CYTH domain Glyoxalase_5 PF14696.6 gi|145590340|ref|YP_001152342.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal TusA PF01206.17 gi|145590340|ref|YP_001152342.1| - 0.063 13.1 0.0 14 5.6 0.0 3.1 3 1 0 3 3 3 0 Sulfurtransferase TusA RuvA_C PF07499.13 gi|145590340|ref|YP_001152342.1| - 0.34 11.4 3.6 1.3 9.6 0.0 2.8 2 1 0 2 2 2 0 RuvA, C-terminal domain DNA_ligase_A_M PF01068.21 gi|145590341|ref|YP_001152343.1| - 2.2e-65 220.1 0.0 3.4e-65 219.5 0.0 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|145590341|ref|YP_001152343.1| - 1e-37 130.1 0.1 2.9e-37 128.6 0.1 1.7 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|145590341|ref|YP_001152343.1| - 4.6e-24 84.9 0.0 4.6e-23 81.7 0.0 2.3 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|145590341|ref|YP_001152343.1| - 1.3e-06 28.8 0.1 2.2e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_OB_2 PF14743.6 gi|145590341|ref|YP_001152343.1| - 0.13 12.3 0.3 0.47 10.5 0.0 2.1 3 0 0 3 3 3 0 DNA ligase OB-like domain PocR PF10114.9 gi|145590341|ref|YP_001152343.1| - 0.21 11.4 0.0 0.53 10.1 0.0 1.6 1 0 0 1 1 1 0 Sensory domain found in PocR Enoyl_reductase PF12241.8 gi|145590342|ref|YP_001152344.1| - 0.068 12.5 0.1 0.1 11.9 0.1 1.2 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region HCR PF07111.12 gi|145590342|ref|YP_001152344.1| - 0.07 11.2 1.4 0.14 10.2 0.1 1.8 2 0 0 2 2 2 0 Alpha helical coiled-coil rod protein (HCR) PfkB PF00294.24 gi|145590343|ref|YP_001152345.1| - 7.4e-48 163.4 1.5 9e-48 163.1 1.5 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|145590343|ref|YP_001152345.1| - 0.0018 17.7 0.1 0.0028 17.1 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Methyltransf_15 PF09445.10 gi|145590343|ref|YP_001152345.1| - 0.14 11.7 0.0 13 5.3 0.1 2.2 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase INT_SG_DDX_CT_C PF15300.6 gi|145590344|ref|YP_001152346.1| - 0.058 13.2 0.3 0.1 12.4 0.3 1.3 1 0 0 1 1 1 0 INTS6/SAGE1/DDX26B/CT45 C-terminus Bcr-Abl_Oligo PF09036.10 gi|145590344|ref|YP_001152346.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain zf-CCCH_2 PF14608.6 gi|145590344|ref|YP_001152346.1| - 2.4 8.8 5.9 15 6.3 0.6 2.9 3 0 0 3 3 3 0 RNA-binding, Nab2-type zinc finger NTP_transferase PF00483.23 gi|145590345|ref|YP_001152347.1| - 4.9e-23 82.0 0.0 6e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|145590345|ref|YP_001152347.1| - 1.6e-08 35.1 0.0 2.2e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain NOD PF06816.13 gi|145590345|ref|YP_001152347.1| - 0.096 12.3 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 NOTCH protein CdvA PF18822.1 gi|145590346|ref|YP_001152348.1| - 0.0015 18.3 7.2 0.0098 15.7 0.7 2.5 2 1 0 2 2 2 2 CdvA-like coiled-coil domain SHOCT PF09851.9 gi|145590346|ref|YP_001152348.1| - 0.011 15.4 4.1 0.011 15.4 4.1 3.1 3 0 0 3 3 3 0 Short C-terminal domain PRESAN PF09687.10 gi|145590346|ref|YP_001152348.1| - 0.043 14.4 1.0 0.6 10.7 0.1 2.2 2 0 0 2 2 2 0 Plasmodium RESA N-terminal Tmemb_cc2 PF10267.9 gi|145590346|ref|YP_001152348.1| - 0.053 12.7 2.1 0.066 12.3 2.1 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein CorA PF01544.18 gi|145590346|ref|YP_001152348.1| - 0.22 10.8 1.4 0.32 10.3 0.8 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein GvpG PF05120.12 gi|145590346|ref|YP_001152348.1| - 0.57 10.2 3.7 0.28 11.2 0.4 2.1 2 0 0 2 2 2 0 Gas vesicle protein G DUF948 PF06103.11 gi|145590347|ref|YP_001152349.1| - 0.0012 19.0 0.2 1 9.7 0.1 2.4 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) MscS_porin PF12795.7 gi|145590347|ref|YP_001152349.1| - 0.0019 17.8 1.6 0.0019 17.8 1.6 2.4 1 1 0 2 2 2 1 Mechanosensitive ion channel porin domain ADIP PF11559.8 gi|145590347|ref|YP_001152349.1| - 0.0053 16.9 6.0 1.7 8.7 0.1 3.1 1 1 1 3 3 3 1 Afadin- and alpha -actinin-Binding CdvA PF18822.1 gi|145590347|ref|YP_001152349.1| - 0.0057 16.5 10.9 0.035 14.0 6.9 2.4 2 0 0 2 2 2 1 CdvA-like coiled-coil domain Snapin_Pallidin PF14712.6 gi|145590347|ref|YP_001152349.1| - 0.0079 16.6 5.7 0.029 14.8 4.0 2.6 2 1 0 2 2 2 1 Snapin/Pallidin FliJ PF02050.16 gi|145590347|ref|YP_001152349.1| - 0.013 15.8 2.9 2.2 8.5 0.0 2.5 2 1 0 2 2 2 0 Flagellar FliJ protein FapA PF03961.13 gi|145590347|ref|YP_001152349.1| - 0.014 14.0 6.0 0.023 13.3 6.0 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A Syntaxin PF00804.25 gi|145590347|ref|YP_001152349.1| - 0.017 14.8 4.0 0.031 13.9 3.8 1.7 1 1 0 1 1 1 0 Syntaxin DUF4527 PF15030.6 gi|145590347|ref|YP_001152349.1| - 0.031 13.7 1.3 0.042 13.3 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4527) Spectrin PF00435.21 gi|145590347|ref|YP_001152349.1| - 0.033 14.7 9.6 1.5 9.3 0.4 3.0 1 1 1 2 2 2 0 Spectrin repeat COG5 PF10392.9 gi|145590347|ref|YP_001152349.1| - 0.04 14.1 2.8 0.079 13.1 2.1 1.8 1 1 1 2 2 1 0 Golgi transport complex subunit 5 HSBP1 PF06825.12 gi|145590347|ref|YP_001152349.1| - 0.051 13.4 4.4 0.66 9.9 0.1 3.8 4 0 0 4 4 4 0 Heat shock factor binding protein 1 KxDL PF10241.9 gi|145590347|ref|YP_001152349.1| - 0.069 13.4 4.0 5.8 7.3 1.0 2.6 1 1 1 2 2 2 0 Uncharacterized conserved protein Cep57_CLD_2 PF14197.6 gi|145590347|ref|YP_001152349.1| - 0.072 13.2 6.3 0.67 10.1 0.1 3.3 3 1 0 3 3 3 0 Centrosome localisation domain of PPC89 EMP24_GP25L PF01105.24 gi|145590347|ref|YP_001152349.1| - 0.1 12.5 3.5 2.3 8.2 0.3 2.5 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD CREPT PF16566.5 gi|145590347|ref|YP_001152349.1| - 0.13 12.4 4.3 4.8 7.3 0.3 2.5 2 1 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour Uds1 PF15456.6 gi|145590347|ref|YP_001152349.1| - 0.14 12.3 0.4 0.14 12.3 0.4 3.0 2 1 2 4 4 4 0 Up-regulated During Septation MPS2 PF17060.5 gi|145590347|ref|YP_001152349.1| - 0.17 11.1 9.0 0.32 10.2 8.3 1.8 1 1 0 1 1 1 0 Monopolar spindle protein 2 WXG100 PF06013.12 gi|145590347|ref|YP_001152349.1| - 0.18 12.0 4.5 1.3 9.3 0.4 3.1 2 1 1 3 3 3 0 Proteins of 100 residues with WXG Laminin_II PF06009.12 gi|145590347|ref|YP_001152349.1| - 0.19 11.8 4.7 1.1 9.3 0.3 2.6 1 1 1 2 2 2 0 Laminin Domain II V-SNARE PF05008.15 gi|145590347|ref|YP_001152349.1| - 0.19 12.1 7.8 2.2 8.7 0.5 3.6 3 1 0 3 3 3 0 Vesicle transport v-SNARE protein N-terminus DUF1664 PF07889.12 gi|145590347|ref|YP_001152349.1| - 0.21 11.6 4.8 2.3 8.3 1.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) AKNA PF12443.8 gi|145590347|ref|YP_001152349.1| - 0.29 11.8 2.0 12 6.6 0.1 2.5 2 1 0 2 2 2 0 AT-hook-containing transcription factor CENP-Q PF13094.6 gi|145590347|ref|YP_001152349.1| - 0.3 11.3 8.7 0.13 12.4 4.4 1.9 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Spc7 PF08317.11 gi|145590347|ref|YP_001152349.1| - 0.32 9.8 11.3 0.5 9.2 5.5 2.0 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF1908 PF08926.11 gi|145590347|ref|YP_001152349.1| - 0.33 10.0 2.4 0.38 9.8 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1908) HMMR_N PF15905.5 gi|145590347|ref|YP_001152349.1| - 0.33 10.4 10.7 0.51 9.8 10.7 1.3 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal OmpH PF03938.14 gi|145590347|ref|YP_001152349.1| - 0.34 11.3 10.8 1 9.7 7.0 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) CemA PF03040.14 gi|145590347|ref|YP_001152349.1| - 0.35 10.8 3.4 2.6 7.9 1.5 2.3 2 1 1 3 3 3 0 CemA family Rootletin PF15035.6 gi|145590347|ref|YP_001152349.1| - 0.39 10.7 7.9 0.22 11.5 1.2 2.2 1 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion CENP-F_leu_zip PF10473.9 gi|145590347|ref|YP_001152349.1| - 0.42 10.6 12.4 0.23 11.5 9.3 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.12 gi|145590347|ref|YP_001152349.1| - 0.69 10.4 3.8 3.2 8.3 1.4 2.8 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein DivIC PF04977.15 gi|145590347|ref|YP_001152349.1| - 0.75 9.6 12.3 1.4 8.8 0.6 3.5 1 1 2 3 3 3 0 Septum formation initiator Syntaxin-6_N PF09177.11 gi|145590347|ref|YP_001152349.1| - 0.75 10.4 10.9 5.7 7.6 1.2 2.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal Vir_act_alpha_C PF10400.9 gi|145590347|ref|YP_001152349.1| - 0.95 10.2 5.8 1.8 9.3 2.6 2.5 1 1 1 2 2 2 0 Virulence activator alpha C-term DUF2203 PF09969.9 gi|145590347|ref|YP_001152349.1| - 1.6 9.4 6.8 1.1 10.0 1.8 2.6 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) XhlA PF10779.9 gi|145590347|ref|YP_001152349.1| - 1.7 8.9 13.5 2.7 8.2 0.2 3.9 3 1 1 4 4 4 0 Haemolysin XhlA TPR_MLP1_2 PF07926.12 gi|145590347|ref|YP_001152349.1| - 2.5 8.2 12.4 1.4e+02 2.5 11.7 2.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4140 PF13600.6 gi|145590347|ref|YP_001152349.1| - 2.8 8.5 8.6 2.8 8.4 0.5 3.0 3 1 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) GTP-bdg_M PF16360.5 gi|145590347|ref|YP_001152349.1| - 2.8 8.6 6.3 1.3 9.7 0.1 3.0 3 1 0 3 3 3 0 GTP-binding GTPase Middle Region PCRF PF03462.18 gi|145590347|ref|YP_001152349.1| - 5.2 6.9 8.2 1.7 8.4 3.4 2.1 1 1 1 2 2 2 0 PCRF domain FlxA PF14282.6 gi|145590347|ref|YP_001152349.1| - 5.5 7.0 6.9 3.8 7.6 0.2 2.6 3 0 0 3 3 2 0 FlxA-like protein BST2 PF16716.5 gi|145590347|ref|YP_001152349.1| - 5.8 7.6 9.7 10 6.7 0.4 3.1 3 0 0 3 3 3 0 Bone marrow stromal antigen 2 APG6_N PF17675.1 gi|145590347|ref|YP_001152349.1| - 7 7.2 12.5 2.2 8.8 7.8 2.3 1 1 1 2 2 2 0 Apg6 coiled-coil region SlyX PF04102.12 gi|145590347|ref|YP_001152349.1| - 7.7 7.2 7.4 2.9 8.6 0.4 3.3 3 2 0 4 4 3 0 SlyX GFD1 PF17331.2 gi|145590347|ref|YP_001152349.1| - 8 6.8 9.5 10 6.5 0.7 3.6 3 0 0 3 3 3 0 GFD1 mRNA transport factor DUF4337 PF14235.6 gi|145590347|ref|YP_001152349.1| - 8.5 6.5 8.9 0.54 10.4 2.2 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4337) NfeD PF01957.18 gi|145590348|ref|YP_001152350.1| - 4.1e-12 46.3 1.2 6.1e-12 45.8 1.2 1.2 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding Phage_holin_3_6 PF07332.11 gi|145590348|ref|YP_001152350.1| - 0.43 10.6 5.1 0.66 10.0 5.1 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CLP1_P PF16575.5 gi|145590349|ref|YP_001152351.1| - 3.7e-31 108.4 0.1 3.9e-30 105.0 0.1 2.1 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|145590349|ref|YP_001152351.1| - 0.0012 18.9 0.0 0.0017 18.4 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|145590349|ref|YP_001152351.1| - 0.015 15.2 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.6 gi|145590349|ref|YP_001152351.1| - 0.03 13.9 0.2 0.079 12.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|145590349|ref|YP_001152351.1| - 0.066 13.3 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|145590349|ref|YP_001152351.1| - 0.11 12.2 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3579 PF12112.8 gi|145590349|ref|YP_001152351.1| - 0.21 12.1 0.0 0.44 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3579) OsmC PF02566.19 gi|145590350|ref|YP_001152352.1| - 0.0076 16.7 0.2 0.35 11.4 0.2 2.3 1 1 0 1 1 1 1 OsmC-like protein PH_2 PF08458.10 gi|145590350|ref|YP_001152352.1| - 0.037 14.4 0.1 0.052 13.9 0.1 1.2 1 0 0 1 1 1 0 Plant pleckstrin homology-like region Tocopherol_cycl PF14249.6 gi|145590350|ref|YP_001152352.1| - 0.14 11.2 0.2 0.18 10.9 0.2 1.1 1 0 0 1 1 1 0 Tocopherol cyclase Fer4_9 PF13187.6 gi|145590351|ref|YP_001152353.1| - 2.7e-05 24.2 10.8 6e-05 23.1 10.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590351|ref|YP_001152353.1| - 9.2e-05 22.3 13.7 0.017 15.2 2.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145590351|ref|YP_001152353.1| - 0.00013 21.9 14.0 0.005 16.9 3.3 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|145590351|ref|YP_001152353.1| - 0.0005 19.8 14.7 0.00088 19.0 2.5 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145590351|ref|YP_001152353.1| - 0.011 15.8 14.3 0.074 13.2 14.3 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590351|ref|YP_001152353.1| - 0.014 16.0 14.1 0.076 13.6 3.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145590351|ref|YP_001152353.1| - 0.055 13.6 8.9 0.13 12.5 8.9 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590351|ref|YP_001152353.1| - 0.19 12.3 8.7 1.7 9.3 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590351|ref|YP_001152353.1| - 2.1 9.4 13.5 0.77 10.7 3.2 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|145590351|ref|YP_001152353.1| - 3 8.4 12.6 0.71 10.4 3.1 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590351|ref|YP_001152353.1| - 7.1 7.4 12.7 0.83 10.3 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145590351|ref|YP_001152353.1| - 9.7 7.4 16.1 2.1 9.4 5.7 3.1 3 1 0 3 3 2 0 4Fe-4S binding domain CxxCxxCC PF03692.15 gi|145590352|ref|YP_001152354.1| - 6.3e-08 33.2 0.8 8.9e-08 32.7 0.8 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF3109 PF11307.8 gi|145590352|ref|YP_001152354.1| - 0.097 12.5 1.6 0.5 10.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3109) Ribosomal_L14e PF01929.17 gi|145590353|ref|YP_001152355.1| - 9.9e-05 22.8 0.2 0.00025 21.5 0.0 1.8 2 1 0 2 2 2 1 Ribosomal protein L14 KOW PF00467.29 gi|145590353|ref|YP_001152355.1| - 0.067 13.2 5.1 0.067 13.2 5.1 2.3 3 0 0 3 3 3 0 KOW motif GlcV_C_terminal PF17847.1 gi|145590353|ref|YP_001152355.1| - 0.11 12.9 1.0 0.2 12.1 1.0 1.6 1 1 0 1 1 1 0 Glucose ABC transporter C-terminal domain TruB_N PF01509.18 gi|145590354|ref|YP_001152356.1| - 7.4e-25 88.1 0.1 3.1e-21 76.3 0.1 3.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|145590354|ref|YP_001152356.1| - 1.2e-22 79.8 0.0 2.8e-22 78.6 0.0 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|145590354|ref|YP_001152356.1| - 5.6e-21 74.3 0.9 8.2e-21 73.8 0.1 1.7 2 0 0 2 2 2 1 PUA domain DKCLD PF08068.12 gi|145590354|ref|YP_001152356.1| - 4.8e-14 52.2 0.0 9.9e-14 51.2 0.0 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain UPF0113 PF03657.13 gi|145590354|ref|YP_001152356.1| - 0.0066 16.7 0.0 0.031 14.6 0.0 2.1 3 0 0 3 3 3 1 UPF0113 PUA domain DUF211 PF02680.14 gi|145590355|ref|YP_001152357.1| - 3.7e-28 97.5 8.8 4.1e-28 97.4 8.8 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|145590355|ref|YP_001152357.1| - 0.34 11.4 5.3 1.5 9.3 5.3 2.0 1 1 0 1 1 1 0 Heavy-metal-associated domain PMT_4TMC PF16192.5 gi|145590356|ref|YP_001152358.1| - 0.065 12.8 2.4 0.083 12.5 2.4 1.1 1 0 0 1 1 1 0 C-terminal four TMM region of protein-O-mannosyltransferase GFO_IDH_MocA PF01408.22 gi|145590358|ref|YP_001152360.1| - 1.7e-15 57.9 0.0 2.7e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|145590358|ref|YP_001152360.1| - 3.8e-05 23.7 0.1 0.00063 19.7 0.0 2.2 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.19 gi|145590358|ref|YP_001152360.1| - 0.1 13.3 0.1 0.18 12.5 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain AAA PF00004.29 gi|145590359|ref|YP_001152361.1| - 0.00065 20.1 0.0 0.00088 19.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|145590359|ref|YP_001152361.1| - 0.0016 17.9 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI ATP_bind_1 PF03029.17 gi|145590359|ref|YP_001152361.1| - 0.0042 16.9 0.0 0.0064 16.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_16 PF13191.6 gi|145590359|ref|YP_001152361.1| - 0.0083 16.5 0.1 0.017 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|145590359|ref|YP_001152361.1| - 0.013 15.3 0.0 0.014 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145590359|ref|YP_001152361.1| - 0.017 15.2 0.1 0.027 14.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|145590359|ref|YP_001152361.1| - 0.018 15.2 0.0 0.025 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_32 PF13654.6 gi|145590359|ref|YP_001152361.1| - 0.018 13.8 0.0 0.024 13.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145590359|ref|YP_001152361.1| - 0.02 14.7 0.0 0.026 14.3 0.0 1.2 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|145590359|ref|YP_001152361.1| - 0.028 14.7 0.0 0.046 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|145590359|ref|YP_001152361.1| - 0.028 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_11 PF13086.6 gi|145590359|ref|YP_001152361.1| - 0.031 14.1 0.0 0.036 13.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145590359|ref|YP_001152361.1| - 0.034 13.9 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|145590359|ref|YP_001152361.1| - 0.099 12.9 0.1 0.65 10.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|145590359|ref|YP_001152361.1| - 0.19 12.2 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|145590359|ref|YP_001152361.1| - 0.22 11.1 0.0 0.37 10.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|145590359|ref|YP_001152361.1| - 0.23 11.0 0.0 0.33 10.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|145590359|ref|YP_001152361.1| - 0.23 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin MoCF_biosynth PF00994.24 gi|145590361|ref|YP_001152363.1| - 8.1e-41 139.0 0.0 1.2e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DpnD-PcfM PF14207.6 gi|145590361|ref|YP_001152363.1| - 0.00031 20.6 0.6 0.0053 16.6 0.1 2.5 2 0 0 2 2 2 1 DpnD/PcfM-like protein CinA_KH PF18146.1 gi|145590361|ref|YP_001152363.1| - 0.023 14.9 0.0 0.089 13.0 0.0 2.0 1 1 0 1 1 1 0 Damage-inducible protein CinA KH domain EamA PF00892.20 gi|145590362|ref|YP_001152364.1| - 3.3e-19 69.4 42.1 1.1e-10 41.8 14.2 3.0 3 0 0 3 3 3 2 EamA-like transporter family AhpC-TSA PF00578.21 gi|145590363|ref|YP_001152365.1| - 7.1e-29 100.3 0.0 8.6e-29 100.0 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|145590363|ref|YP_001152365.1| - 7.8e-20 71.1 0.0 8.9e-20 70.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|145590363|ref|YP_001152365.1| - 3.9e-05 23.7 0.0 4.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF3801 PF12687.7 gi|145590363|ref|YP_001152365.1| - 0.0038 17.3 0.0 0.0043 17.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3801) Thioredoxin_8 PF13905.6 gi|145590363|ref|YP_001152365.1| - 0.016 15.5 0.0 0.026 14.9 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like GSHPx PF00255.19 gi|145590363|ref|YP_001152365.1| - 0.024 14.2 0.1 0.12 11.9 0.1 1.9 1 1 0 1 1 1 0 Glutathione peroxidase DUF899 PF05988.12 gi|145590363|ref|YP_001152365.1| - 0.028 14.0 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF2551 PF10826.8 gi|145590363|ref|YP_001152365.1| - 0.061 13.6 0.0 0.19 12.0 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2551) SCO1-SenC PF02630.14 gi|145590363|ref|YP_001152365.1| - 0.099 12.6 0.1 0.23 11.4 0.1 1.8 1 1 0 1 1 1 0 SCO1/SenC TusA PF01206.17 gi|145590364|ref|YP_001152366.1| - 9.8e-05 22.1 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF5460 PF17544.2 gi|145590364|ref|YP_001152366.1| - 0.095 11.7 0.1 0.1 11.6 0.1 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5460) DrsE_2 PF13686.6 gi|145590365|ref|YP_001152367.1| - 1.3e-10 41.4 0.1 4.5e-05 23.4 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|145590365|ref|YP_001152367.1| - 4.8e-10 39.8 0.0 5.9e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family HhH-GPD PF00730.25 gi|145590366|ref|YP_001152368.1| - 6.7e-24 84.4 0.0 8.8e-24 84.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|145590366|ref|YP_001152368.1| - 1e-06 28.3 0.0 2.5e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|145590366|ref|YP_001152368.1| - 0.00015 22.0 7.6 0.00027 21.2 7.6 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III IMS_HHH PF11798.8 gi|145590366|ref|YP_001152368.1| - 0.0039 17.4 0.1 0.067 13.5 0.0 2.7 2 0 0 2 2 2 1 IMS family HHH motif HHH_5 PF14520.6 gi|145590366|ref|YP_001152368.1| - 0.0061 17.1 0.1 0.014 16.0 0.1 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain Transposase_20 PF02371.16 gi|145590366|ref|YP_001152368.1| - 0.017 15.4 0.0 0.038 14.3 0.0 1.6 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family IF2_N PF04760.15 gi|145590367|ref|YP_001152369.1| - 0.006 16.4 0.3 0.17 11.8 0.1 2.3 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_19 PF12844.7 gi|145590367|ref|YP_001152369.1| - 0.041 13.9 0.3 2.7 8.1 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain CHAT PF12770.7 gi|145590367|ref|YP_001152369.1| - 0.076 12.4 0.0 0.092 12.1 0.0 1.0 1 0 0 1 1 1 0 CHAT domain AAA_5 PF07728.14 gi|145590368|ref|YP_001152370.1| - 0.18 11.8 0.0 0.62 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Hpr_kinase_C PF07475.12 gi|145590368|ref|YP_001152370.1| - 0.2 11.2 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain Peptidase_M32 PF02074.15 gi|145590369|ref|YP_001152371.1| - 6.6e-160 533.1 0.0 7.5e-160 532.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase TrmB PF01978.19 gi|145590369|ref|YP_001152371.1| - 0.081 12.8 0.8 1 9.3 0.1 2.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB SQHop_cyclase_N PF13249.6 gi|145590369|ref|YP_001152371.1| - 0.1 11.7 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Squalene-hopene cyclase N-terminal domain Thg1 PF04446.12 gi|145590370|ref|YP_001152372.1| - 4.6e-12 46.1 0.0 5.9e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 tRNAHis guanylyltransferase CTP_transf_like PF01467.26 gi|145590371|ref|YP_001152373.1| - 5.1e-09 36.5 0.0 8.6e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|145590371|ref|YP_001152373.1| - 0.015 15.2 0.0 0.035 14.0 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase Peptidase_M28 PF04389.17 gi|145590372|ref|YP_001152374.1| - 4.9e-07 29.6 0.0 9.9e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|145590372|ref|YP_001152374.1| - 0.0038 17.2 0.0 0.01 15.8 0.0 1.7 1 0 0 1 1 1 1 PA domain tRNA_bind_2 PF13725.6 gi|145590373|ref|YP_001152375.1| - 0.0013 18.5 0.3 0.0016 18.2 0.3 1.2 1 0 0 1 1 1 1 Possible tRNA binding domain Snf7 PF03357.21 gi|145590373|ref|YP_001152375.1| - 0.002 17.8 1.1 0.01 15.4 0.6 2.0 1 1 1 2 2 2 1 Snf7 MukF_C PF17193.4 gi|145590373|ref|YP_001152375.1| - 0.0032 17.6 0.2 0.0051 17.0 0.2 1.3 1 1 0 1 1 1 1 MukF C-terminal domain DUF5365 PF17326.2 gi|145590373|ref|YP_001152375.1| - 0.0049 17.3 0.2 0.0074 16.7 0.2 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5365) Filament PF00038.21 gi|145590373|ref|YP_001152375.1| - 0.011 15.4 4.1 0.073 12.6 4.1 2.0 1 1 0 1 1 1 0 Intermediate filament protein Apolipoprotein PF01442.18 gi|145590373|ref|YP_001152375.1| - 0.012 15.5 2.6 0.071 13.0 2.6 2.0 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF4164 PF13747.6 gi|145590373|ref|YP_001152375.1| - 0.024 14.9 8.7 12 6.3 8.7 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) APG17 PF04108.12 gi|145590373|ref|YP_001152375.1| - 0.031 13.4 1.4 0.075 12.1 0.4 1.9 1 1 1 2 2 2 0 Autophagy protein Apg17 HBM PF16591.5 gi|145590373|ref|YP_001152375.1| - 0.031 13.7 1.2 0.16 11.4 1.3 1.9 1 1 0 1 1 1 0 Helical bimodular sensor domain ApoLp-III PF07464.11 gi|145590373|ref|YP_001152375.1| - 0.035 14.2 0.2 0.079 13.0 0.1 1.7 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) ZapD PF07072.11 gi|145590373|ref|YP_001152375.1| - 0.039 13.7 1.0 0.053 13.3 0.7 1.4 1 1 0 1 1 1 0 Cell division protein Med28 PF11594.8 gi|145590373|ref|YP_001152375.1| - 0.046 13.8 0.3 0.13 12.4 0.3 1.8 1 1 0 1 1 1 0 Mediator complex subunit 28 Hrs_helical PF12210.8 gi|145590373|ref|YP_001152375.1| - 0.053 14.1 2.0 0.1 13.1 1.0 1.9 1 1 1 2 2 2 0 Hepatocyte growth factor-regulated tyrosine kinase substrate T4_Rnl2_C PF18043.1 gi|145590373|ref|YP_001152375.1| - 0.069 13.3 0.8 3.7 7.8 0.1 2.4 1 1 1 2 2 2 0 T4 RNA ligase 2 C-terminal Rep_1 PF01446.17 gi|145590373|ref|YP_001152375.1| - 0.082 12.4 0.2 0.11 12.0 0.2 1.3 1 0 0 1 1 1 0 Replication protein DUF4083 PF13314.6 gi|145590373|ref|YP_001152375.1| - 0.089 12.8 0.3 0.53 10.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) NPV_P10 PF05531.12 gi|145590373|ref|YP_001152375.1| - 0.094 13.2 2.8 2.6 8.6 0.5 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Turandot PF07240.11 gi|145590373|ref|YP_001152375.1| - 0.099 12.6 0.7 2.8 8.0 0.1 2.4 2 1 0 2 2 2 0 Stress-inducible humoral factor Turandot TraF_2 PF13729.6 gi|145590373|ref|YP_001152375.1| - 0.13 11.6 0.6 0.2 11.0 0.4 1.4 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein DUF883 PF05957.13 gi|145590373|ref|YP_001152375.1| - 0.17 12.5 1.7 4.4 8.0 0.1 2.5 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Phe_tRNA-synt_N PF02912.18 gi|145590373|ref|YP_001152375.1| - 0.24 11.3 0.1 0.24 11.3 0.1 2.1 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain MerR-DNA-bind PF09278.11 gi|145590373|ref|YP_001152375.1| - 1.2 9.8 5.2 2.3 8.8 2.4 2.6 1 1 2 3 3 3 0 MerR, DNA binding YvrJ PF12841.7 gi|145590373|ref|YP_001152375.1| - 1.2 8.8 5.0 13 5.4 0.1 3.7 4 0 0 4 4 4 0 YvrJ protein family Acylphosphatase PF00708.18 gi|145590374|ref|YP_001152376.1| - 1.6e-07 31.6 0.0 1.7e-07 31.5 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase Hist_deacetyl PF00850.19 gi|145590375|ref|YP_001152377.1| - 0.00012 21.7 0.0 0.0012 18.4 0.0 1.9 2 0 0 2 2 2 1 Histone deacetylase domain PDT PF00800.18 gi|145590376|ref|YP_001152378.1| - 3.1e-29 102.1 0.0 4.1e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|145590376|ref|YP_001152378.1| - 6.2e-12 45.1 0.0 9.3e-11 41.3 0.0 2.6 3 0 0 3 3 3 1 ACT domain DEAD PF00270.29 gi|145590377|ref|YP_001152379.1| - 8.5e-21 74.5 0.0 1.9e-20 73.4 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|145590377|ref|YP_001152379.1| - 4.4e-14 52.8 0.0 2e-13 50.7 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|145590377|ref|YP_001152379.1| - 7e-09 36.0 0.0 6.6e-08 32.9 0.0 2.4 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|145590377|ref|YP_001152379.1| - 3.2e-06 27.3 0.0 4.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|145590377|ref|YP_001152379.1| - 1.7e-05 24.8 0.0 6.9e-05 22.9 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|145590377|ref|YP_001152379.1| - 2.4e-05 23.9 0.5 0.017 15.0 0.1 3.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|145590377|ref|YP_001152379.1| - 0.00067 19.4 0.0 0.0023 17.7 0.0 1.9 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda SNF2_N PF00176.23 gi|145590377|ref|YP_001152379.1| - 0.014 14.1 0.0 0.022 13.5 0.0 1.2 1 0 0 1 1 1 0 SNF2 family N-terminal domain HHH_3 PF12836.7 gi|145590377|ref|YP_001152379.1| - 0.02 15.2 0.0 0.055 13.7 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif YicC_N PF03755.13 gi|145590377|ref|YP_001152379.1| - 0.1 13.0 0.1 2.6 8.5 0.0 2.7 2 0 0 2 2 2 0 YicC-like family, N-terminal region HhH-GPD PF00730.25 gi|145590377|ref|YP_001152379.1| - 0.11 13.0 0.0 0.39 11.2 0.0 1.9 2 0 0 2 2 2 0 HhH-GPD superfamily base excision DNA repair protein IMS_HHH PF11798.8 gi|145590377|ref|YP_001152379.1| - 0.11 12.9 0.0 18 5.9 0.0 2.8 2 0 0 2 2 2 0 IMS family HHH motif HEAT_2 PF13646.6 gi|145590377|ref|YP_001152379.1| - 1.5 9.3 4.9 25 5.3 0.3 4.0 2 1 2 4 4 4 0 HEAT repeats MCM PF00493.23 gi|145590378|ref|YP_001152380.1| - 2.7e-100 334.1 0.0 3.9e-100 333.5 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|145590378|ref|YP_001152380.1| - 9.1e-38 128.9 0.0 1.7e-37 128.1 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|145590378|ref|YP_001152380.1| - 5.1e-27 94.1 4.3 7.6e-27 93.6 2.7 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|145590378|ref|YP_001152380.1| - 2.3e-10 40.2 0.1 1.2e-06 28.1 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|145590378|ref|YP_001152380.1| - 4.9e-09 36.7 1.4 1.6e-08 35.0 0.4 2.3 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|145590378|ref|YP_001152380.1| - 3.3e-07 30.4 0.0 8.1e-07 29.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|145590378|ref|YP_001152380.1| - 4.6e-07 29.8 0.0 1.5e-06 28.1 0.0 1.9 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Zn-ribbon_8 PF09723.10 gi|145590378|ref|YP_001152380.1| - 6.1e-06 26.3 1.7 1.2e-05 25.3 1.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain Sigma54_activat PF00158.26 gi|145590378|ref|YP_001152380.1| - 0.0014 18.3 0.1 0.0067 16.2 0.1 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|145590378|ref|YP_001152380.1| - 0.0015 19.0 0.0 0.0057 17.1 0.0 2.1 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) HypA PF01155.19 gi|145590378|ref|YP_001152380.1| - 0.0094 16.0 0.2 0.023 14.7 0.2 1.6 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_16 PF13191.6 gi|145590378|ref|YP_001152380.1| - 0.01 16.3 0.0 0.044 14.2 0.0 2.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|145590378|ref|YP_001152380.1| - 0.037 13.8 1.1 0.091 12.5 1.1 1.6 1 0 0 1 1 1 0 AAA domain DZR PF12773.7 gi|145590378|ref|YP_001152380.1| - 0.18 11.8 0.4 0.34 11.0 0.4 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|145590378|ref|YP_001152380.1| - 0.64 9.8 4.6 8.9 6.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TMF_TATA_bd PF12325.8 gi|145590378|ref|YP_001152380.1| - 0.7 10.1 3.5 14 6.0 0.1 2.8 3 0 0 3 3 2 0 TATA element modulatory factor 1 TATA binding DUF2321 PF10083.9 gi|145590378|ref|YP_001152380.1| - 1.1 8.9 2.7 11 5.6 0.2 2.7 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Rubredoxin_2 PF18073.1 gi|145590378|ref|YP_001152380.1| - 1.2 8.9 5.4 4.3 7.1 1.0 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|145590378|ref|YP_001152380.1| - 1.4 8.9 4.2 6.6 6.7 4.3 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain PaREP1 PF05942.11 gi|145590379|ref|YP_001152381.1| - 8.6e-29 99.8 1.0 1.3e-28 99.3 1.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Class_IIIsignal PF04021.12 gi|145590381|ref|YP_001152383.1| - 0.0057 16.6 6.6 0.0057 16.6 6.6 2.1 2 0 0 2 2 2 1 Class III signal peptide PsbY PF06298.11 gi|145590381|ref|YP_001152383.1| - 0.08 12.9 3.1 0.16 11.9 3.1 1.4 1 0 0 1 1 1 0 Photosystem II protein Y (PsbY) FtsX PF02687.21 gi|145590381|ref|YP_001152383.1| - 0.88 10.1 6.6 1.6 9.3 6.6 1.6 1 1 0 1 1 1 0 FtsX-like permease family GT87 PF09594.10 gi|145590382|ref|YP_001152384.1| - 2e-05 24.4 13.7 2.3e-05 24.2 13.7 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 87 PMT_2 PF13231.6 gi|145590382|ref|YP_001152384.1| - 0.016 15.5 7.2 0.016 15.5 7.2 1.4 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF389 PF04087.14 gi|145590382|ref|YP_001152384.1| - 0.087 12.9 5.5 0.4 10.7 0.2 2.4 2 1 0 3 3 3 0 Domain of unknown function (DUF389) PLDc_N PF13396.6 gi|145590382|ref|YP_001152384.1| - 0.47 10.4 6.7 1.1 9.3 2.8 2.8 2 0 0 2 2 2 0 Phospholipase_D-nuclease N-terminal PQQ_2 PF13360.6 gi|145590384|ref|YP_001152386.1| - 3.1e-05 23.7 9.9 0.046 13.3 0.1 3.8 4 0 0 4 4 4 2 PQQ-like domain PQQ_3 PF13570.6 gi|145590384|ref|YP_001152386.1| - 0.0048 17.3 33.0 0.1 13.1 3.2 7.2 8 0 0 8 8 8 3 PQQ-like domain Aminotran_1_2 PF00155.21 gi|145590385|ref|YP_001152387.1| - 4.2e-35 121.6 0.0 5e-35 121.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DUF3552 PF12072.8 gi|145590386|ref|YP_001152388.1| - 3.7e-05 23.2 1.8 4e-05 23.1 1.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) HrpB7 PF09486.10 gi|145590386|ref|YP_001152388.1| - 0.001 19.5 0.2 0.0012 19.3 0.2 1.2 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) TPR_MLP1_2 PF07926.12 gi|145590386|ref|YP_001152388.1| - 0.0014 18.6 0.1 0.0022 18.0 0.1 1.3 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF16 PF01519.16 gi|145590386|ref|YP_001152388.1| - 0.0019 18.7 0.5 0.0022 18.4 0.5 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF16 DUF948 PF06103.11 gi|145590386|ref|YP_001152388.1| - 0.0035 17.6 0.3 0.0058 16.9 0.3 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF948) FliD_C PF07195.12 gi|145590386|ref|YP_001152388.1| - 0.009 15.5 0.2 0.009 15.5 0.2 1.2 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus COG2 PF06148.11 gi|145590386|ref|YP_001152388.1| - 0.013 15.6 1.4 0.041 14.0 1.0 1.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_DNA_bd PF12329.8 gi|145590386|ref|YP_001152388.1| - 0.014 15.4 5.3 0.045 13.8 3.0 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding DLP_helical PF18709.1 gi|145590386|ref|YP_001152388.1| - 0.02 14.1 0.7 0.022 14.0 0.7 1.1 1 0 0 1 1 1 0 Dynamin-like helical domain RPW8 PF05659.11 gi|145590386|ref|YP_001152388.1| - 0.021 14.5 0.7 0.041 13.6 0.6 1.5 1 1 0 1 1 1 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF2203 PF09969.9 gi|145590386|ref|YP_001152388.1| - 0.035 14.8 0.9 0.047 14.4 0.7 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Cep57_MT_bd PF06657.13 gi|145590386|ref|YP_001152388.1| - 0.05 14.1 0.6 0.079 13.4 0.6 1.3 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 HSBP1 PF06825.12 gi|145590386|ref|YP_001152388.1| - 0.061 13.2 6.8 1.8 8.4 0.5 2.9 1 1 1 2 2 2 0 Heat shock factor binding protein 1 DUF1664 PF07889.12 gi|145590386|ref|YP_001152388.1| - 0.12 12.4 2.4 0.29 11.2 1.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Med9 PF07544.13 gi|145590386|ref|YP_001152388.1| - 0.15 12.1 2.9 0.17 12.0 1.7 1.7 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Laminin_II PF06009.12 gi|145590386|ref|YP_001152388.1| - 0.17 11.9 4.3 0.3 11.1 4.2 1.5 1 1 0 1 1 1 0 Laminin Domain II LUC7 PF03194.15 gi|145590386|ref|YP_001152388.1| - 0.3 10.7 3.7 1.1 8.8 4.0 1.7 1 1 1 2 2 2 0 LUC7 N_terminus XhlA PF10779.9 gi|145590386|ref|YP_001152388.1| - 0.38 11.0 6.9 0.99 9.7 6.9 1.7 1 1 0 1 1 1 0 Haemolysin XhlA Trimer_CC PF08954.11 gi|145590386|ref|YP_001152388.1| - 0.45 10.1 4.5 1.5 8.4 0.9 2.7 1 1 2 3 3 3 0 Trimerisation motif Radical_SAM_C PF16199.5 gi|145590387|ref|YP_001152389.1| - 1.9e-24 85.5 0.1 3.3e-24 84.7 0.1 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|145590387|ref|YP_001152389.1| - 5.5e-19 69.2 0.0 1.6e-18 67.6 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_10 PF13673.7 gi|145590387|ref|YP_001152389.1| - 1.2e-05 25.2 0.0 2.1e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|145590387|ref|YP_001152389.1| - 3.9e-05 23.9 0.4 9.1e-05 22.7 0.4 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family DUF2204 PF09970.9 gi|145590389|ref|YP_001152391.1| - 8.4e-05 22.3 0.0 0.00063 19.4 0.0 2.0 1 1 1 2 2 2 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|145590389|ref|YP_001152391.1| - 0.029 14.0 0.1 25 4.4 0.0 2.9 2 1 0 3 3 3 0 Uncharacterised nucleotidyltransferase TrmB PF01978.19 gi|145590390|ref|YP_001152392.1| - 8.7e-05 22.3 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|145590390|ref|YP_001152392.1| - 0.00037 20.9 0.0 0.00058 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|145590390|ref|YP_001152392.1| - 0.00078 19.3 0.5 0.00078 19.3 0.5 1.5 2 0 0 2 2 2 1 MarR family PaaX PF07848.12 gi|145590390|ref|YP_001152392.1| - 0.0028 17.9 0.1 0.0037 17.4 0.1 1.3 1 0 0 1 1 1 1 PaaX-like protein DprA_WH PF17782.1 gi|145590390|ref|YP_001152392.1| - 0.0039 17.3 2.6 0.0062 16.6 2.6 1.3 1 0 0 1 1 1 1 DprA winged helix domain MarR PF01047.22 gi|145590390|ref|YP_001152392.1| - 0.0054 16.6 0.0 0.0079 16.1 0.0 1.2 1 0 0 1 1 1 1 MarR family FeoC PF09012.10 gi|145590390|ref|YP_001152392.1| - 0.0056 16.7 0.0 0.0075 16.3 0.0 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_IclR PF09339.10 gi|145590390|ref|YP_001152392.1| - 0.0086 15.9 0.4 0.015 15.1 0.4 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|145590390|ref|YP_001152392.1| - 0.014 15.8 0.0 0.02 15.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_47 PF16221.5 gi|145590390|ref|YP_001152392.1| - 0.023 14.2 0.1 0.031 13.8 0.1 1.3 1 0 0 1 1 1 0 winged helix-turn-helix Fe_dep_repress PF01325.19 gi|145590390|ref|YP_001152392.1| - 0.026 14.7 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|145590390|ref|YP_001152392.1| - 0.028 14.3 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4381 PF14316.6 gi|145590390|ref|YP_001152392.1| - 0.032 14.5 1.7 0.042 14.1 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) GntR PF00392.21 gi|145590390|ref|YP_001152392.1| - 0.047 13.4 0.4 0.065 12.9 0.4 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HemN_C PF06969.16 gi|145590390|ref|YP_001152392.1| - 0.058 13.5 0.0 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HTH_24 PF13412.6 gi|145590390|ref|YP_001152392.1| - 0.063 12.8 0.0 0.096 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|145590390|ref|YP_001152392.1| - 0.077 13.1 1.1 0.13 12.4 0.9 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Methyltransf_11 PF08241.12 gi|145590391|ref|YP_001152393.1| - 3.5e-10 40.4 0.0 7.8e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145590391|ref|YP_001152393.1| - 1.1e-07 32.5 0.0 4.3e-06 27.4 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145590391|ref|YP_001152393.1| - 0.033 14.0 0.0 0.04 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF3225 PF11533.8 gi|145590392|ref|YP_001152394.1| - 0.076 12.7 0.1 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3225) SHR3_chaperone PF08229.11 gi|145590395|ref|YP_001152397.1| - 0.047 12.7 0.1 0.072 12.1 0.1 1.3 1 0 0 1 1 1 0 ER membrane protein SH3 FeS_assembly_P PF01883.19 gi|145590396|ref|YP_001152398.1| - 0.033 14.3 1.2 1.6 8.9 0.1 2.7 3 0 0 3 3 3 0 Iron-sulfur cluster assembly protein UPF0051 PF01458.17 gi|145590397|ref|YP_001152399.1| - 2e-21 76.7 0.0 2.9e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF1743 PF08489.11 gi|145590398|ref|YP_001152400.1| - 1.4e-27 96.0 0.0 2.5e-27 95.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) C1_1 PF00130.22 gi|145590398|ref|YP_001152400.1| - 0.02 14.8 0.2 0.056 13.3 0.1 1.7 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|145590398|ref|YP_001152400.1| - 0.037 14.0 0.4 0.074 13.0 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf_Rg PF17915.1 gi|145590398|ref|YP_001152400.1| - 1.9 7.9 3.6 4 6.9 3.6 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger ATPase_2 PF01637.18 gi|145590399|ref|YP_001152401.1| - 4.8e-61 206.6 0.0 9.2e-61 205.7 0.0 1.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|145590399|ref|YP_001152401.1| - 0.0013 18.9 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|145590399|ref|YP_001152401.1| - 0.0099 16.3 0.0 0.033 14.6 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|145590399|ref|YP_001152401.1| - 0.01 16.1 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145590399|ref|YP_001152401.1| - 0.02 15.3 0.0 0.047 14.1 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|145590399|ref|YP_001152401.1| - 0.047 14.1 0.0 0.12 12.8 0.0 1.6 1 1 1 2 2 2 0 RNA helicase AAA_24 PF13479.6 gi|145590399|ref|YP_001152401.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145590399|ref|YP_001152401.1| - 0.069 13.1 0.0 0.15 11.9 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|145590399|ref|YP_001152401.1| - 0.11 12.7 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain SieB PF14163.6 gi|145590399|ref|YP_001152401.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Super-infection exclusion protein B Peripla_BP_2 PF01497.18 gi|145590400|ref|YP_001152402.1| - 0.0014 18.2 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF348 PF03990.14 gi|145590400|ref|YP_001152402.1| - 0.031 14.0 0.0 0.38 10.5 0.0 2.3 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain DUF3487 PF11990.8 gi|145590401|ref|YP_001152403.1| - 0.31 10.9 4.1 1.9 8.4 2.6 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) PrgI PF12666.7 gi|145590401|ref|YP_001152403.1| - 0.48 11.2 5.0 0.51 11.1 4.5 1.3 1 1 0 1 1 1 0 PrgI family protein FUN14 PF04930.15 gi|145590401|ref|YP_001152403.1| - 1.6 9.2 7.8 26 5.3 7.8 2.2 1 1 0 1 1 1 0 FUN14 family CxxCxxCC PF03692.15 gi|145590402|ref|YP_001152404.1| - 1.3e-07 32.2 0.2 2.2e-07 31.4 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain TPP_enzyme_C PF02775.21 gi|145590403|ref|YP_001152405.1| - 2.9e-29 101.9 0.1 6.3e-29 100.7 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|145590403|ref|YP_001152405.1| - 9.8e-22 76.9 0.4 1.6e-21 76.2 0.4 1.3 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|145590404|ref|YP_001152406.1| - 1e-49 169.4 0.1 1e-49 169.4 0.1 1.5 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|145590404|ref|YP_001152406.1| - 1.9e-35 122.5 0.2 4.3e-35 121.4 0.1 1.6 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|145590404|ref|YP_001152406.1| - 2.6e-07 30.9 0.0 1.6e-06 28.4 0.0 2.5 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II OxoGdeHyase_C PF16870.5 gi|145590404|ref|YP_001152406.1| - 0.026 14.2 0.0 6.2 6.5 0.0 2.5 2 0 0 2 2 2 0 2-oxoglutarate dehydrogenase C-terminal TPP_enzyme_N PF02776.18 gi|145590404|ref|YP_001152406.1| - 0.039 13.6 0.0 0.086 12.4 0.0 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MarC PF01914.17 gi|145590405|ref|YP_001152407.1| - 1.6e-27 96.3 23.6 2.3e-27 95.7 23.6 1.2 1 1 0 1 1 1 1 MarC family integral membrane protein FBPase_3 PF01950.16 gi|145590406|ref|YP_001152408.1| - 3.6e-178 592.2 0.0 4.5e-178 592.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Acetyltransf_1 PF00583.25 gi|145590407|ref|YP_001152409.1| - 2.2e-09 37.6 0.1 2.6e-09 37.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|145590407|ref|YP_001152409.1| - 2.9e-06 28.0 0.0 3.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|145590407|ref|YP_001152409.1| - 0.00051 20.0 0.0 0.00082 19.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|145590407|ref|YP_001152409.1| - 0.0014 19.0 0.1 0.0028 18.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|145590407|ref|YP_001152409.1| - 0.0035 17.3 0.0 0.0043 17.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AdoMet_MTase PF07757.13 gi|145590407|ref|YP_001152409.1| - 0.031 14.6 0.0 0.045 14.1 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Acetyltransf_4 PF13420.7 gi|145590407|ref|YP_001152409.1| - 0.053 13.7 0.0 0.068 13.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CPSase_sm_chain PF00988.22 gi|145590408|ref|YP_001152410.1| - 5.6e-48 162.0 0.1 8.1e-48 161.5 0.1 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|145590408|ref|YP_001152410.1| - 7.5e-43 146.5 0.0 1e-42 146.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|145590408|ref|YP_001152410.1| - 3.4e-11 43.3 0.3 4.4e-09 36.4 0.3 2.2 1 1 0 1 1 1 1 Peptidase C26 CPSase_L_D2 PF02786.17 gi|145590409|ref|YP_001152411.1| - 5e-97 323.5 0.0 7e-63 211.9 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|145590409|ref|YP_001152411.1| - 9.3e-22 77.7 0.0 2.3e-21 76.4 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|145590409|ref|YP_001152411.1| - 1.9e-18 66.6 0.0 4.4e-08 32.9 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|145590409|ref|YP_001152411.1| - 1.1e-13 51.2 0.0 1.4e-06 28.0 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.6 gi|145590409|ref|YP_001152411.1| - 2.5e-12 46.6 0.0 4.1e-05 23.3 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|145590409|ref|YP_001152411.1| - 1.1e-11 45.0 0.0 4.1e-05 23.7 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|145590409|ref|YP_001152411.1| - 6.9e-11 42.0 0.0 0.00051 19.6 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|145590409|ref|YP_001152411.1| - 3.2e-10 40.1 0.0 0.00012 21.9 0.0 2.6 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|145590409|ref|YP_001152411.1| - 9.3e-07 28.6 0.0 0.017 14.7 0.0 2.8 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_2 PF08442.10 gi|145590409|ref|YP_001152411.1| - 0.001 18.7 0.0 0.13 11.8 0.0 2.5 2 0 0 2 2 2 1 ATP-grasp domain Nif11 PF07862.11 gi|145590409|ref|YP_001152411.1| - 0.063 13.6 0.0 7.5 6.9 0.0 3.1 2 0 0 2 2 2 0 Nif11 domain SHOCT PF09851.9 gi|145590409|ref|YP_001152411.1| - 6.5 6.6 5.4 42 4.1 0.2 3.3 3 0 0 3 3 3 0 Short C-terminal domain RimK PF08443.11 gi|145590410|ref|YP_001152412.1| - 3.6e-34 118.0 0.0 7.7e-34 116.9 0.0 1.6 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|145590410|ref|YP_001152412.1| - 4e-12 45.9 0.0 7.3e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|145590410|ref|YP_001152412.1| - 6.5e-09 36.0 0.0 1.1e-08 35.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain DUF3783 PF12646.7 gi|145590410|ref|YP_001152412.1| - 0.029 14.3 0.1 0.077 13.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3783) R2K_3 PF14243.6 gi|145590410|ref|YP_001152412.1| - 0.039 14.0 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Dala_Dala_lig_C PF07478.13 gi|145590410|ref|YP_001152412.1| - 0.083 12.4 0.1 0.25 10.9 0.1 1.8 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus AIRS_C PF02769.22 gi|145590411|ref|YP_001152413.1| - 1.2e-21 77.4 0.4 4.8e-21 75.5 0.4 1.8 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|145590411|ref|YP_001152413.1| - 5.8e-14 52.5 1.7 2.1e-13 50.7 1.7 1.9 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF99 PF01949.16 gi|145590413|ref|YP_001152415.1| - 1.3e-46 158.3 0.0 1.5e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 SBP_bac_8 PF13416.6 gi|145590414|ref|YP_001152416.1| - 5.7e-30 105.1 2.4 8.2e-30 104.6 2.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|145590414|ref|YP_001152416.1| - 5.5e-17 62.0 1.9 8.1e-17 61.4 1.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|145590414|ref|YP_001152416.1| - 3.5e-14 53.5 8.7 3.5e-14 53.5 8.7 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|145590414|ref|YP_001152416.1| - 8.6e-11 42.0 0.0 2.6e-10 40.4 0.0 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein ABC2_membrane_3 PF12698.7 gi|145590414|ref|YP_001152416.1| - 0.036 13.2 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein TAT_signal PF10518.9 gi|145590414|ref|YP_001152416.1| - 0.14 12.1 1.8 0.29 11.1 1.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Acid_PPase PF12689.7 gi|145590415|ref|YP_001152417.1| - 3.9e-09 36.6 0.0 4.7e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Acid Phosphatase NIF PF03031.18 gi|145590415|ref|YP_001152417.1| - 1.1e-05 25.2 0.1 1.3e-05 25.0 0.1 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase HAD_2 PF13419.6 gi|145590415|ref|YP_001152417.1| - 0.0002 21.5 0.0 0.00096 19.3 0.0 1.8 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145590415|ref|YP_001152417.1| - 0.046 14.1 1.7 0.21 12.0 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase DUF2608 PF11019.8 gi|145590415|ref|YP_001152417.1| - 0.22 11.0 0.1 0.4 10.1 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2608) SCP2 PF02036.17 gi|145590416|ref|YP_001152418.1| - 5.1e-05 23.7 0.0 6.1e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family MoCF_biosynth PF00994.24 gi|145590417|ref|YP_001152419.1| - 2.4e-32 111.6 0.2 2.8e-32 111.4 0.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain LDcluster4 PF18306.1 gi|145590418|ref|YP_001152420.1| - 1.8e-18 66.6 0.0 2.2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|145590418|ref|YP_001152420.1| - 8.6e-06 25.9 0.2 2.1e-05 24.6 0.1 1.6 1 1 0 1 1 1 1 Possible lysine decarboxylase LSDAT_prok PF18171.1 gi|145590418|ref|YP_001152420.1| - 0.00032 20.0 0.0 0.043 13.1 0.0 2.1 2 0 0 2 2 2 2 SLOG in TRPM, prokaryote Nuc_deoxyrib_tr PF05014.15 gi|145590418|ref|YP_001152420.1| - 0.0016 18.4 0.1 0.0038 17.2 0.0 1.8 1 1 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Cutinase PF01083.22 gi|145590418|ref|YP_001152420.1| - 0.057 13.4 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 Cutinase LD_cluster2 PF18163.1 gi|145590418|ref|YP_001152420.1| - 0.1 12.1 1.4 1.6 8.2 0.5 2.3 2 1 0 2 2 2 0 SLOG cluster2 CPBP PF02517.16 gi|145590419|ref|YP_001152421.1| - 3.8e-15 56.0 6.5 3.8e-15 56.0 6.5 2.2 1 1 0 2 2 2 1 CPBP intramembrane metalloprotease T4SS_CagC PF16943.5 gi|145590419|ref|YP_001152421.1| - 0.36 11.0 0.1 0.36 11.0 0.1 2.0 2 1 0 2 2 2 0 Cag pathogenicity island, type IV secretory system Sld5 PF05916.11 gi|145590420|ref|YP_001152422.1| - 1e-11 45.2 0.5 1.3e-11 44.9 0.5 1.1 1 0 0 1 1 1 1 GINS complex protein Thymidylate_kin PF02223.17 gi|145590421|ref|YP_001152423.1| - 1.4e-48 165.1 0.0 1.6e-48 164.9 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|145590421|ref|YP_001152423.1| - 1.8e-08 34.5 0.0 2.5e-06 27.5 0.0 2.6 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|145590421|ref|YP_001152423.1| - 8.1e-08 32.9 0.0 3.6e-07 30.8 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|145590421|ref|YP_001152423.1| - 2.5e-06 27.8 0.0 3.9e-06 27.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain Ploopntkinase1 PF18748.1 gi|145590421|ref|YP_001152423.1| - 0.00017 21.2 0.0 0.57 9.7 0.0 2.1 2 0 0 2 2 2 2 P-loop Nucleotide Kinase1 AAA_33 PF13671.6 gi|145590421|ref|YP_001152423.1| - 0.00057 20.1 0.0 0.0047 17.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|145590421|ref|YP_001152423.1| - 0.019 15.4 0.1 0.19 12.2 0.1 2.3 1 1 0 1 1 1 0 AAA domain SKI PF01202.22 gi|145590421|ref|YP_001152423.1| - 0.056 13.6 0.0 3.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Shikimate kinase AAA_5 PF07728.14 gi|145590421|ref|YP_001152423.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|145590421|ref|YP_001152423.1| - 0.16 12.5 0.0 0.29 11.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter GATase PF00117.28 gi|145590422|ref|YP_001152424.1| - 5.3e-17 62.2 0.0 6.1e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|145590422|ref|YP_001152424.1| - 8.7e-07 29.0 0.0 4.5e-06 26.6 0.0 1.9 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|145590422|ref|YP_001152424.1| - 0.00055 19.7 1.2 0.55 10.0 0.1 2.8 2 1 1 3 3 3 2 Peptidase C26 GATase_3 PF07685.14 gi|145590422|ref|YP_001152424.1| - 0.0067 16.1 0.0 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|145590422|ref|YP_001152424.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family DUF2976 PF11190.8 gi|145590422|ref|YP_001152424.1| - 0.14 12.0 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) PRA-CH PF01502.18 gi|145590423|ref|YP_001152425.1| - 9.4e-31 105.5 0.1 1.4e-30 105.0 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase PGM_PMM_III PF02880.16 gi|145590423|ref|YP_001152425.1| - 0.11 12.8 0.1 0.14 12.4 0.1 1.2 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Aminotran_1_2 PF00155.21 gi|145590424|ref|YP_001152426.1| - 3.5e-33 115.3 0.0 3.9e-33 115.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|145590424|ref|YP_001152426.1| - 0.0056 15.6 0.0 0.0082 15.1 0.0 1.1 1 0 0 1 1 1 1 Allinase HisG PF01634.18 gi|145590425|ref|YP_001152427.1| - 7.8e-46 155.9 0.0 1.1e-45 155.5 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|145590425|ref|YP_001152427.1| - 1.3e-21 76.5 0.2 3.7e-21 75.1 0.2 1.8 1 0 0 1 1 1 1 HisG, C-terminal domain Lyase_1 PF00206.20 gi|145590426|ref|YP_001152428.1| - 5.2e-33 114.8 0.0 7.8e-33 114.2 0.0 1.3 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|145590426|ref|YP_001152428.1| - 0.0068 16.5 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ADSL_C PF10397.9 gi|145590426|ref|YP_001152428.1| - 0.047 14.2 1.2 0.72 10.4 0.0 3.4 4 0 0 4 4 4 0 Adenylosuccinate lyase C-terminus Adenylsucc_synt PF00709.21 gi|145590427|ref|YP_001152429.1| - 2.1e-67 227.9 0.0 1.9e-36 125.9 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase PaREP1 PF05942.11 gi|145590428|ref|YP_001152430.1| - 1.6e-27 95.7 0.4 2.1e-27 95.3 0.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Pyr_redox_2 PF07992.14 gi|145590429|ref|YP_001152431.1| - 9.1e-15 54.6 1.0 1.8e-07 30.7 0.1 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|145590429|ref|YP_001152431.1| - 3.6e-10 39.1 2.2 2.2e-05 23.4 0.5 2.7 3 0 0 3 3 3 2 HI0933-like protein DAO PF01266.24 gi|145590429|ref|YP_001152431.1| - 1.4e-09 38.0 5.1 4.1e-05 23.3 0.8 2.9 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|145590429|ref|YP_001152431.1| - 2.2e-09 37.0 0.5 0.0032 16.8 0.4 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|145590429|ref|YP_001152431.1| - 6.4e-09 35.4 1.4 0.0018 17.4 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|145590429|ref|YP_001152431.1| - 8.5e-07 28.4 8.2 1.5e-06 27.6 1.3 2.9 3 0 0 3 3 3 1 FAD binding domain Thi4 PF01946.17 gi|145590429|ref|YP_001152431.1| - 1.4e-06 27.8 0.2 2.7e-06 26.8 0.2 1.5 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|145590429|ref|YP_001152431.1| - 3.1e-05 23.4 0.3 4.7e-05 22.8 0.3 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|145590429|ref|YP_001152431.1| - 0.0002 20.5 1.2 0.00029 20.0 0.5 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|145590429|ref|YP_001152431.1| - 0.00061 19.8 0.5 0.27 11.2 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|145590429|ref|YP_001152431.1| - 0.0013 19.0 0.8 0.0045 17.2 0.8 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|145590429|ref|YP_001152431.1| - 0.0077 16.8 1.6 2.9 8.5 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|145590429|ref|YP_001152431.1| - 0.031 13.6 2.8 0.078 12.3 2.3 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|145590429|ref|YP_001152431.1| - 0.16 11.3 0.6 0.27 10.6 0.6 1.3 1 0 0 1 1 1 0 ThiF family Amino_oxidase PF01593.24 gi|145590429|ref|YP_001152431.1| - 0.16 11.2 4.1 4 6.6 0.0 2.9 3 0 0 3 3 3 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|145590429|ref|YP_001152431.1| - 0.22 10.3 1.1 0.32 9.8 1.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase DUF996 PF06195.13 gi|145590430|ref|YP_001152432.1| - 0.45 10.8 22.8 0.024 14.9 9.8 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF996) PRA-PH PF01503.17 gi|145590431|ref|YP_001152433.1| - 1.6e-16 60.5 0.4 1.9e-16 60.3 0.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|145590431|ref|YP_001152433.1| - 8e-06 25.9 2.4 1.9e-05 24.7 0.1 2.0 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain SpoVS PF04232.12 gi|145590431|ref|YP_001152433.1| - 0.014 15.1 0.1 0.02 14.6 0.1 1.2 1 0 0 1 1 1 0 Stage V sporulation protein S (SpoVS) Imm57 PF15596.6 gi|145590431|ref|YP_001152433.1| - 0.034 14.5 0.1 1 9.7 0.0 2.1 1 1 1 2 2 2 0 Immunity protein 57 DUF4164 PF13747.6 gi|145590431|ref|YP_001152433.1| - 0.039 14.2 2.1 0.54 10.6 2.1 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) MazG-like PF12643.7 gi|145590431|ref|YP_001152433.1| - 0.053 13.8 0.5 0.11 12.8 0.2 1.7 2 0 0 2 2 2 0 MazG-like family UPF0180 PF03698.13 gi|145590431|ref|YP_001152433.1| - 0.097 12.9 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Histidinol_dh PF00815.20 gi|145590432|ref|YP_001152434.1| - 1.6e-69 234.9 0.0 2.3e-69 234.4 0.0 1.2 1 0 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.21 gi|145590433|ref|YP_001152435.1| - 1.2e-84 283.3 2.4 1.4e-84 283.2 2.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|145590433|ref|YP_001152435.1| - 1.5e-10 41.0 5.9 3.4e-05 23.4 0.5 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.21 gi|145590433|ref|YP_001152435.1| - 3e-10 39.8 0.1 7.1e-05 22.2 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|145590433|ref|YP_001152435.1| - 4.8e-10 39.0 0.2 1.7e-05 24.1 0.1 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|145590433|ref|YP_001152435.1| - 4.3e-09 36.0 2.0 0.001 18.4 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG TMP-TENI PF02581.17 gi|145590433|ref|YP_001152435.1| - 1.3e-08 34.4 1.9 0.0022 17.4 0.1 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase IMPDH PF00478.25 gi|145590433|ref|YP_001152435.1| - 5.3e-07 29.0 2.4 0.0019 17.3 0.1 2.1 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|145590433|ref|YP_001152435.1| - 1.9e-06 27.4 0.8 0.028 13.8 0.1 2.3 2 0 0 2 2 2 2 Glycerol-3-phosphate responsive antiterminator IGPS PF00218.21 gi|145590433|ref|YP_001152435.1| - 0.0019 17.5 0.0 0.58 9.3 0.0 2.4 2 1 0 2 2 2 2 Indole-3-glycerol phosphate synthase DUF561 PF04481.12 gi|145590433|ref|YP_001152435.1| - 0.0026 17.0 0.1 0.9 8.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF561) BtpA PF03437.15 gi|145590433|ref|YP_001152435.1| - 0.003 17.0 0.8 0.34 10.3 0.2 2.3 2 0 0 2 2 2 1 BtpA family Trp_syntA PF00290.20 gi|145590433|ref|YP_001152435.1| - 0.0038 16.1 1.0 0.078 11.8 0.4 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain CdhD PF03599.16 gi|145590433|ref|YP_001152435.1| - 0.0098 14.6 0.1 0.15 10.7 0.1 2.0 2 0 0 2 2 2 1 CO dehydrogenase/acetyl-CoA synthase delta subunit PcrB PF01884.17 gi|145590433|ref|YP_001152435.1| - 0.01 15.3 0.9 0.096 12.1 0.1 2.1 2 0 0 2 2 2 0 PcrB family FMN_dh PF01070.18 gi|145590433|ref|YP_001152435.1| - 0.012 14.7 7.0 0.47 9.4 0.3 2.7 2 1 1 3 3 3 0 FMN-dependent dehydrogenase SOR_SNZ PF01680.17 gi|145590433|ref|YP_001152435.1| - 0.012 15.4 0.8 0.49 10.1 0.0 2.5 2 1 0 2 2 2 0 SOR/SNZ family PTE PF02126.18 gi|145590433|ref|YP_001152435.1| - 0.091 12.2 0.1 2.9 7.2 0.0 2.1 2 0 0 2 2 2 0 Phosphotriesterase family Pyr_redox PF00070.27 gi|145590433|ref|YP_001152435.1| - 0.25 11.9 5.1 3.1 8.4 1.1 3.7 3 2 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase IGPD PF00475.18 gi|145590435|ref|YP_001152437.1| - 1.8e-43 148.3 0.0 2.1e-43 148.1 0.0 1.1 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Bclx_interact PF08945.10 gi|145590435|ref|YP_001152437.1| - 0.44 10.4 1.9 8.6 6.2 0.1 2.3 2 0 0 2 2 2 0 Bcl-x interacting, BH3 domain His_biosynth PF00977.21 gi|145590436|ref|YP_001152438.1| - 1.2e-44 152.6 0.0 1.3e-44 152.4 0.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|145590436|ref|YP_001152438.1| - 0.023 14.2 0.2 2.2 7.7 0.1 2.3 2 1 0 2 2 2 0 PcrB family FMN_dh PF01070.18 gi|145590436|ref|YP_001152438.1| - 0.16 10.9 1.1 0.22 10.5 1.1 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase RtcB PF01139.17 gi|145590437|ref|YP_001152439.1| - 1.8e-161 538.0 0.0 2.1e-161 537.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF5617 PF18493.1 gi|145590437|ref|YP_001152439.1| - 0.16 12.1 0.3 0.35 11.0 0.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5617) GyrI-like PF06445.15 gi|145590438|ref|YP_001152440.1| - 0.00063 20.1 0.0 0.00093 19.5 0.0 1.3 1 0 0 1 1 1 1 GyrI-like small molecule binding domain NucS PF01939.16 gi|145590439|ref|YP_001152441.1| - 6.5e-56 189.2 0.1 7.4e-56 189.1 0.1 1.0 1 0 0 1 1 1 1 Endonuclease NucS UPF0102 PF02021.17 gi|145590439|ref|YP_001152441.1| - 0.0049 17.1 0.8 0.03 14.5 0.1 2.4 3 0 0 3 3 3 1 Uncharacterised protein family UPF0102 PDDEXK_4 PF14281.6 gi|145590439|ref|YP_001152441.1| - 0.008 16.3 0.0 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|145590439|ref|YP_001152441.1| - 0.01 16.0 0.0 0.023 14.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF83 YhcG_C PF06250.11 gi|145590439|ref|YP_001152441.1| - 0.079 12.8 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 YhcG PDDEXK nuclease domain GARS_N PF02844.15 gi|145590439|ref|YP_001152441.1| - 0.14 12.9 0.4 3 8.7 0.1 2.3 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain FAF PF11250.8 gi|145590439|ref|YP_001152441.1| - 0.15 12.3 1.7 1.4 9.2 0.1 3.1 3 1 1 4 4 4 0 Fantastic Four meristem regulator Aminotran_3 PF00202.21 gi|145590441|ref|YP_001152443.1| - 8e-118 393.6 0.0 9.8e-118 393.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|145590441|ref|YP_001152443.1| - 0.052 12.7 0.0 0.083 12.0 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II ABC_tran PF00005.27 gi|145590442|ref|YP_001152444.1| - 1.6e-22 80.5 0.0 2.2e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590442|ref|YP_001152444.1| - 1.8e-11 44.4 0.0 8.6e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590442|ref|YP_001152444.1| - 1.3e-05 24.7 0.9 0.0032 16.9 0.3 2.5 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|145590442|ref|YP_001152444.1| - 1.8e-05 24.4 0.1 3.7e-05 23.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|145590442|ref|YP_001152444.1| - 8.4e-05 22.8 0.0 0.00016 21.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|145590442|ref|YP_001152444.1| - 0.0001 22.8 0.0 0.00017 22.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|145590442|ref|YP_001152444.1| - 0.0016 18.3 0.1 0.0034 17.3 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|145590442|ref|YP_001152444.1| - 0.0044 17.6 0.0 0.012 16.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145590442|ref|YP_001152444.1| - 0.011 16.2 0.1 0.033 14.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|145590442|ref|YP_001152444.1| - 0.011 15.5 0.1 0.077 12.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain MutS_V PF00488.21 gi|145590442|ref|YP_001152444.1| - 0.018 15.0 0.1 5.4 7.0 0.0 2.2 2 0 0 2 2 2 0 MutS domain V NACHT PF05729.12 gi|145590442|ref|YP_001152444.1| - 0.02 14.8 0.0 0.033 14.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|145590442|ref|YP_001152444.1| - 0.024 15.1 0.0 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|145590442|ref|YP_001152444.1| - 0.026 14.3 0.0 0.04 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|145590442|ref|YP_001152444.1| - 0.038 14.2 0.0 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|145590442|ref|YP_001152444.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|145590442|ref|YP_001152444.1| - 0.077 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.9 gi|145590442|ref|YP_001152444.1| - 0.091 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_17 PF13207.6 gi|145590442|ref|YP_001152444.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145590442|ref|YP_001152444.1| - 0.12 12.0 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|145590442|ref|YP_001152444.1| - 0.12 11.7 0.1 0.18 11.2 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|145590442|ref|YP_001152444.1| - 0.13 12.6 0.0 0.43 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|145590442|ref|YP_001152444.1| - 0.13 12.0 0.1 0.46 10.2 0.0 1.9 3 0 0 3 3 3 0 Cytidylate kinase IstB_IS21 PF01695.17 gi|145590442|ref|YP_001152444.1| - 0.15 11.8 0.1 0.28 10.9 0.1 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein LPD22 PF18834.1 gi|145590442|ref|YP_001152444.1| - 0.2 11.9 0.0 0.84 9.9 0.0 1.9 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 AAA_7 PF12775.7 gi|145590442|ref|YP_001152444.1| - 0.22 11.0 0.1 0.38 10.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AA_kinase PF00696.28 gi|145590445|ref|YP_001152447.1| - 9.6e-35 120.3 0.0 1.1e-34 120.1 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family polyprenyl_synt PF00348.17 gi|145590446|ref|YP_001152448.1| - 2.2e-55 187.5 0.0 2.7e-55 187.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase LPD7 PF18821.1 gi|145590446|ref|YP_001152448.1| - 0.21 11.7 1.3 0.9 9.7 0.2 2.6 2 1 0 2 2 2 0 Large polyvalent protein-associated domain 7 DUF92 PF01940.16 gi|145590447|ref|YP_001152449.1| - 3.1e-54 183.9 11.9 3.6e-54 183.7 11.9 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF92 YobH PF13996.6 gi|145590447|ref|YP_001152449.1| - 0.033 14.2 0.1 3 7.9 0.0 3.2 2 1 1 3 3 3 0 YobH-like protein DUF1427 PF07235.11 gi|145590447|ref|YP_001152449.1| - 2.4 8.2 5.8 3.9 7.5 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) UPF0047 PF01894.17 gi|145590448|ref|YP_001152450.1| - 2.2e-34 118.1 0.0 2.5e-34 117.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Cullin_Nedd8 PF10557.9 gi|145590449|ref|YP_001152451.1| - 0.014 15.4 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Cullin protein neddylation domain HTH_27 PF13463.6 gi|145590449|ref|YP_001152451.1| - 0.054 14.0 0.0 0.41 11.2 0.1 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|145590449|ref|YP_001152451.1| - 0.055 13.1 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain AIRS PF00586.24 gi|145590450|ref|YP_001152452.1| - 1.5e-13 51.2 0.1 2.4e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AbiJ_NTD5 PF18865.1 gi|145590451|ref|YP_001152453.1| - 0.08 12.8 0.0 0.23 11.3 0.0 1.7 1 1 1 2 2 2 0 AbiJ N-terminal domain 5 Rib_5-P_isom_A PF06026.14 gi|145590452|ref|YP_001152454.1| - 2.2e-52 177.2 0.0 2.6e-52 176.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|145590452|ref|YP_001152454.1| - 6e-07 29.5 0.2 1.1e-06 28.7 0.1 1.5 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|145590452|ref|YP_001152454.1| - 0.0049 16.0 0.1 0.014 14.5 0.0 1.6 2 0 0 2 2 2 1 Putative sugar-binding domain CBS PF00571.28 gi|145590453|ref|YP_001152455.1| - 1.4e-27 95.8 5.3 1.2e-14 54.4 0.9 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|145590453|ref|YP_001152455.1| - 0.016 15.5 1.0 2.5 8.4 0.1 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain AFOR_N PF02730.15 gi|145590454|ref|YP_001152456.1| - 1.8e-38 132.4 0.2 2.7e-38 131.8 0.2 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.18 gi|145590454|ref|YP_001152456.1| - 1.3e-15 57.3 0.0 3e-15 56.1 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 DUF4229 PF14012.6 gi|145590456|ref|YP_001152458.1| - 0.023 14.8 0.3 0.05 13.7 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Nitro_FeMo-Co PF02579.17 gi|145590457|ref|YP_001152459.1| - 5.3e-13 49.1 0.0 8.2e-13 48.5 0.0 1.3 1 1 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor Peripla_BP_2 PF01497.18 gi|145590457|ref|YP_001152459.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein POR PF01558.18 gi|145590458|ref|YP_001152460.1| - 7.8e-37 127.0 0.0 2.8e-36 125.2 0.0 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|145590459|ref|YP_001152461.1| - 5.4e-14 51.3 14.2 2.4e-08 33.4 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145590459|ref|YP_001152461.1| - 1.4e-10 41.1 6.1 2.3e-10 40.5 6.1 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590459|ref|YP_001152461.1| - 1.2e-08 35.4 18.4 2.9e-07 31.0 10.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145590459|ref|YP_001152461.1| - 4.5e-08 32.8 12.1 2.3e-05 24.3 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145590459|ref|YP_001152461.1| - 4.8e-08 33.0 20.7 2.8e-06 27.3 10.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590459|ref|YP_001152461.1| - 1.1e-07 32.7 8.3 0.001 20.0 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|145590459|ref|YP_001152461.1| - 1.2e-07 31.8 17.5 1.9e-06 27.9 9.3 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590459|ref|YP_001152461.1| - 6.9e-07 29.0 11.5 0.00028 20.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|145590459|ref|YP_001152461.1| - 5.5e-06 26.8 3.4 0.03 14.8 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145590459|ref|YP_001152461.1| - 0.00023 21.5 8.8 0.00078 19.8 8.8 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590459|ref|YP_001152461.1| - 0.00035 20.9 11.5 0.055 14.0 0.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145590459|ref|YP_001152461.1| - 0.0031 18.0 9.7 0.13 12.8 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|145590459|ref|YP_001152461.1| - 0.0034 18.1 8.7 0.49 11.2 2.5 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|145590459|ref|YP_001152461.1| - 0.015 16.1 9.6 0.03 15.2 1.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain DUF4176 PF13780.6 gi|145590459|ref|YP_001152461.1| - 0.11 12.6 0.2 13 6.0 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4176) Fer4_18 PF13746.6 gi|145590459|ref|YP_001152461.1| - 0.23 11.7 6.0 3.9 7.7 0.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|145590459|ref|YP_001152461.1| - 1.6 8.9 5.7 1.5 9.0 0.8 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_3 PF12798.7 gi|145590459|ref|YP_001152461.1| - 3.4 8.8 16.6 3.2 8.9 5.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain POR_N PF01855.19 gi|145590460|ref|YP_001152462.1| - 2.1e-76 256.7 2.1 2.1e-76 256.7 2.1 1.8 1 1 1 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|145590460|ref|YP_001152462.1| - 1.8e-29 102.0 0.1 4.4e-29 100.8 0.1 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|145590460|ref|YP_001152462.1| - 5.7e-06 26.2 0.1 1.6e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|145590461|ref|YP_001152463.1| - 6.8e-26 90.9 0.2 1e-25 90.3 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CarboxypepD_reg PF13620.6 gi|145590462|ref|YP_001152464.1| - 4.1e-05 23.8 1.0 4.1e-05 23.8 1.0 4.1 3 1 0 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|145590462|ref|YP_001152464.1| - 0.0011 19.0 0.2 0.0011 19.0 0.2 3.0 4 0 0 4 4 4 1 CarboxypepD_reg-like domain SHIRT PF18655.1 gi|145590462|ref|YP_001152464.1| - 0.17 12.5 0.1 4.9 7.8 0.0 2.8 3 0 0 3 3 3 0 SHIRT domain MG4 PF17789.1 gi|145590462|ref|YP_001152464.1| - 0.58 10.3 2.7 3.5 7.8 0.1 3.3 3 1 1 4 4 4 0 Macroglobulin domain MG4 Glyco_hydro_57 PF03065.15 gi|145590464|ref|YP_001152466.1| - 1.8e-20 73.4 0.0 2.5e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3536 PF12055.8 gi|145590464|ref|YP_001152466.1| - 3.9e-10 39.5 0.8 6.5e-08 32.2 0.8 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF3536) MFS_1 PF07690.16 gi|145590465|ref|YP_001152467.1| - 1.2e-29 103.3 55.8 1.1e-18 67.3 22.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|145590465|ref|YP_001152467.1| - 1.7e-05 23.9 23.2 3.4e-05 22.9 6.7 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|145590465|ref|YP_001152467.1| - 0.048 12.5 16.9 0.75 8.6 0.2 3.7 2 2 2 4 4 4 0 MFS_1 like family OATP PF03137.20 gi|145590465|ref|YP_001152467.1| - 5.2 5.2 8.0 3.6 5.8 1.2 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family HTH_36 PF13730.6 gi|145590466|ref|YP_001152468.1| - 0.0035 17.2 0.0 0.0075 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain PALP PF00291.25 gi|145590467|ref|YP_001152469.1| - 7.5e-37 127.3 0.2 5.8e-36 124.4 0.2 1.9 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|145590468|ref|YP_001152470.1| - 3.8e-52 176.8 0.4 2.8e-50 170.7 0.0 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|145590468|ref|YP_001152470.1| - 8.1e-35 119.9 1.3 1.2e-34 119.3 0.6 1.6 2 0 0 2 2 2 1 Flavoprotein YjeF_N PF03853.15 gi|145590468|ref|YP_001152470.1| - 0.00026 20.9 0.1 0.059 13.3 0.0 2.4 2 0 0 2 2 2 2 YjeF-related protein N-terminus Glyco_transf_4 PF13439.6 gi|145590468|ref|YP_001152470.1| - 0.24 11.4 4.1 5.9 6.9 0.1 3.4 2 2 0 2 2 2 0 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|145590468|ref|YP_001152470.1| - 0.92 9.9 15.8 2.7 8.4 2.6 3.6 2 2 1 3 3 3 0 Glycosyl transferase 4-like domain Rubrerythrin PF02915.17 gi|145590469|ref|YP_001152471.1| - 2.3e-05 24.8 1.9 0.00014 22.3 0.2 2.7 1 1 1 2 2 2 1 Rubrerythrin HTH_3 PF01381.22 gi|145590469|ref|YP_001152471.1| - 0.00021 21.3 0.0 0.00066 19.7 0.0 2.0 1 0 0 1 1 1 1 Helix-turn-helix Phenol_Hydrox PF02332.18 gi|145590469|ref|YP_001152471.1| - 0.004 16.7 0.0 0.88 9.1 0.0 2.2 1 1 1 2 2 2 2 Methane/Phenol/Toluene Hydroxylase HTH_1 PF00126.27 gi|145590469|ref|YP_001152471.1| - 0.0096 15.8 0.1 0.03 14.3 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_23 PF13384.6 gi|145590469|ref|YP_001152471.1| - 0.019 14.7 0.2 0.15 11.9 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|145590469|ref|YP_001152471.1| - 0.02 14.6 0.3 0.42 10.3 0.0 3.1 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_17 PF12728.7 gi|145590469|ref|YP_001152471.1| - 0.075 13.2 0.1 4.2 7.6 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|145590469|ref|YP_001152471.1| - 0.19 11.9 1.3 0.8 9.9 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1138 PF06592.13 gi|145590470|ref|YP_001152472.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1138) Glyco_hydro_77 PF02446.17 gi|145590471|ref|YP_001152473.1| - 1.1e-143 479.5 0.0 1.8e-143 478.8 0.0 1.2 1 1 0 1 1 1 1 4-alpha-glucanotransferase Linocin_M18 PF04454.12 gi|145590472|ref|YP_001152474.1| - 1.8e-31 109.4 0.0 3e-31 108.6 0.0 1.4 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|145590472|ref|YP_001152474.1| - 1.1e-08 35.5 0.6 1.4e-07 32.0 0.2 2.1 2 0 0 2 2 2 1 Rubrerythrin DUF2383 PF09537.10 gi|145590472|ref|YP_001152474.1| - 0.016 15.5 0.2 0.038 14.3 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|145590472|ref|YP_001152474.1| - 0.019 14.9 0.2 0.048 13.6 0.1 1.7 2 0 0 2 2 2 0 Ferritin-like domain Glyco_tran_WecB PF03808.13 gi|145590473|ref|YP_001152475.1| - 0.011 15.7 0.0 0.012 15.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferase WecB/TagA/CpsF family PanZ PF12568.8 gi|145590473|ref|YP_001152475.1| - 0.11 12.2 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ P120R PF08062.11 gi|145590475|ref|YP_001152477.1| - 0.024 14.9 1.0 0.041 14.2 1.0 1.3 1 0 0 1 1 1 0 P120R (NUC006) repeat 2-Hacid_dh_C PF02826.19 gi|145590476|ref|YP_001152478.1| - 9.7e-35 119.5 0.0 1.3e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|145590476|ref|YP_001152478.1| - 7.8e-10 38.5 0.0 9.5e-10 38.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|145590476|ref|YP_001152478.1| - 0.025 14.7 0.0 0.047 13.9 0.0 1.4 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Oxidored_nitro PF00148.19 gi|145590476|ref|YP_001152478.1| - 0.04 12.6 0.0 0.056 12.2 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.21 gi|145590476|ref|YP_001152478.1| - 0.062 13.4 0.0 5 7.2 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.21 gi|145590476|ref|YP_001152478.1| - 0.11 11.9 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 ThiF family Pyr_redox PF00070.27 gi|145590476|ref|YP_001152478.1| - 0.13 12.9 0.5 3.9 8.1 0.1 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Asparaginase_C PF17763.1 gi|145590477|ref|YP_001152479.1| - 0.011 15.9 1.0 0.31 11.3 0.5 2.3 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain ABC2_membrane_3 PF12698.7 gi|145590478|ref|YP_001152480.1| - 2.3e-16 59.8 8.5 3.2e-16 59.4 8.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|145590478|ref|YP_001152480.1| - 1.4e-09 37.6 17.7 2e-09 37.1 17.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|145590478|ref|YP_001152480.1| - 3.6e-07 29.8 16.2 1.4e-06 27.9 13.0 2.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|145590478|ref|YP_001152480.1| - 0.0017 18.3 8.9 0.0017 18.3 8.9 2.3 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|145590478|ref|YP_001152480.1| - 0.026 14.1 11.3 0.33 10.5 7.3 2.5 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|145590479|ref|YP_001152481.1| - 1.3e-25 90.5 0.0 1.7e-25 90.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590479|ref|YP_001152481.1| - 5.4e-11 42.8 0.0 5.4e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|145590479|ref|YP_001152481.1| - 0.00078 20.0 0.0 0.00099 19.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145590479|ref|YP_001152481.1| - 0.0022 17.8 0.1 0.006 16.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|145590479|ref|YP_001152481.1| - 0.0029 17.5 0.0 0.0056 16.6 0.0 1.4 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|145590479|ref|YP_001152481.1| - 0.0035 17.8 0.0 0.0067 16.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|145590479|ref|YP_001152481.1| - 0.0077 15.9 0.1 0.021 14.5 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain HHH_2 PF12826.7 gi|145590479|ref|YP_001152481.1| - 0.01 15.9 0.0 0.3 11.2 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_27 PF13514.6 gi|145590479|ref|YP_001152481.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|145590479|ref|YP_001152481.1| - 0.013 15.2 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain TsaE PF02367.17 gi|145590479|ref|YP_001152481.1| - 0.017 15.1 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_29 PF13555.6 gi|145590479|ref|YP_001152481.1| - 0.024 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|145590479|ref|YP_001152481.1| - 0.036 14.3 0.0 0.078 13.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145590479|ref|YP_001152481.1| - 0.051 13.6 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|145590479|ref|YP_001152481.1| - 0.067 13.6 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KDGP_aldolase PF07071.11 gi|145590479|ref|YP_001152481.1| - 0.072 12.9 0.1 0.16 11.8 0.0 1.6 2 0 0 2 2 2 0 KDGP aldolase SMC_N PF02463.19 gi|145590479|ref|YP_001152481.1| - 0.076 12.4 0.2 2.5 7.5 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|145590479|ref|YP_001152481.1| - 0.078 13.1 0.2 0.13 12.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|145590479|ref|YP_001152481.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|145590479|ref|YP_001152481.1| - 0.11 10.0 0.7 0.15 9.6 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) VitK2_biosynth PF02621.14 gi|145590480|ref|YP_001152482.1| - 1.5e-18 67.2 0.0 1.8e-18 67.0 0.0 1.1 1 0 0 1 1 1 1 Menaquinone biosynthesis ThiD2 PF17792.1 gi|145590480|ref|YP_001152482.1| - 0.019 15.4 0.1 7.7 7.0 0.0 2.2 2 0 0 2 2 2 0 ThiD2 family HTH_Tnp_ISL3 PF13542.6 gi|145590480|ref|YP_001152482.1| - 0.067 12.6 0.3 1.6 8.2 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Bcl-2 PF00452.19 gi|145590480|ref|YP_001152482.1| - 0.1 13.3 0.1 0.17 12.6 0.1 1.4 1 0 0 1 1 1 0 Apoptosis regulator proteins, Bcl-2 family MPLKIP PF15502.6 gi|145590480|ref|YP_001152482.1| - 0.13 12.5 0.2 0.51 10.6 0.1 1.8 2 0 0 2 2 2 0 M-phase-specific PLK1-interacting protein Methyltransf_11 PF08241.12 gi|145590481|ref|YP_001152483.1| - 1.3e-17 64.3 0.0 2e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145590481|ref|YP_001152483.1| - 2e-13 50.8 0.0 3.2e-13 50.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145590481|ref|YP_001152483.1| - 2.6e-13 50.2 0.0 3.2e-13 49.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145590481|ref|YP_001152483.1| - 3.3e-11 43.8 0.0 7.1e-11 42.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|145590481|ref|YP_001152483.1| - 7.4e-08 32.0 0.0 9.5e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|145590481|ref|YP_001152483.1| - 1e-07 31.9 0.0 2.5e-07 30.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|145590481|ref|YP_001152483.1| - 0.001 18.7 0.0 0.0013 18.3 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|145590481|ref|YP_001152483.1| - 0.0048 15.5 0.0 0.0049 15.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_8 PF05148.15 gi|145590481|ref|YP_001152483.1| - 0.025 14.5 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Radical_SAM PF04055.21 gi|145590482|ref|YP_001152484.1| - 2.6e-19 70.2 0.0 1.5e-17 64.5 0.0 2.1 2 0 0 2 2 2 2 Radical SAM superfamily NTP_transf_2 PF01909.23 gi|145590483|ref|YP_001152485.1| - 1e-14 54.6 0.0 1.3e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145590483|ref|YP_001152485.1| - 8e-08 32.3 0.0 8.9e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|145590483|ref|YP_001152485.1| - 0.00068 19.8 0.0 0.00077 19.6 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|145590483|ref|YP_001152485.1| - 0.0079 16.0 0.0 0.012 15.4 0.0 1.4 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|145590484|ref|YP_001152486.1| - 9.9e-30 103.1 1.9 1.1e-29 102.9 1.9 1.0 1 0 0 1 1 1 1 HEPN domain Radical_SAM PF04055.21 gi|145590485|ref|YP_001152487.1| - 4.1e-14 53.3 0.2 1e-13 52.0 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily FHA PF00498.26 gi|145590486|ref|YP_001152488.1| - 7.6e-13 48.6 0.0 9.4e-13 48.3 0.0 1.3 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|145590486|ref|YP_001152488.1| - 3e-06 27.5 0.0 6e-06 26.5 0.0 1.5 2 0 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain MazG PF03819.17 gi|145590487|ref|YP_001152489.1| - 5.6e-08 32.8 0.4 8.2e-08 32.3 0.4 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|145590487|ref|YP_001152489.1| - 9.2e-05 22.6 0.4 9.2e-05 22.6 0.4 1.5 2 1 0 2 2 2 1 MazG-like family dUTPase_2 PF08761.11 gi|145590487|ref|YP_001152489.1| - 0.0082 16.3 0.1 0.14 12.3 0.0 2.0 2 0 0 2 2 2 1 dUTPase Thiamine_BP PF01910.17 gi|145590488|ref|YP_001152490.1| - 1e-27 95.8 0.0 1.2e-27 95.7 0.0 1.0 1 0 0 1 1 1 1 Thiamine-binding protein ComA PF02679.15 gi|145590488|ref|YP_001152490.1| - 0.0094 15.4 0.0 0.01 15.3 0.0 1.1 1 0 0 1 1 1 1 (2R)-phospho-3-sulfolactate synthase (ComA) THF_DHG_CYH PF00763.23 gi|145590488|ref|YP_001152490.1| - 0.05 13.9 0.3 1.6 9.0 0.1 2.0 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MARVEL PF01284.23 gi|145590490|ref|YP_001152492.1| - 0.016 15.2 3.3 0.036 14.1 3.3 1.7 1 1 0 1 1 1 0 Membrane-associating domain ATPase PF06745.13 gi|145590491|ref|YP_001152493.1| - 2e-46 158.2 0.3 2.7e-44 151.3 0.3 2.2 1 1 0 1 1 1 1 KaiC Rad51 PF08423.11 gi|145590491|ref|YP_001152493.1| - 1.4e-07 31.1 0.0 4.3e-07 29.5 0.0 1.8 2 0 0 2 2 2 1 Rad51 AAA_25 PF13481.6 gi|145590491|ref|YP_001152493.1| - 8e-07 28.8 0.1 3.6e-06 26.7 0.0 2.1 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|145590491|ref|YP_001152493.1| - 6.5e-06 26.0 0.0 2.3e-05 24.2 0.0 1.8 2 1 0 2 2 2 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|145590491|ref|YP_001152493.1| - 1.2e-05 24.8 0.0 0.0001 21.7 0.0 2.3 2 1 1 3 3 3 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|145590491|ref|YP_001152493.1| - 3.5e-05 24.2 0.0 6.9e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain GvpD PF07088.11 gi|145590491|ref|YP_001152493.1| - 3.8e-05 22.5 0.0 0.00014 20.7 0.0 1.8 1 1 0 1 1 1 1 GvpD gas vesicle protein PAXNEB PF05625.11 gi|145590491|ref|YP_001152493.1| - 7.4e-05 22.0 0.0 0.0034 16.6 0.0 2.1 1 1 0 2 2 2 1 PAXNEB protein RecA PF00154.21 gi|145590491|ref|YP_001152493.1| - 0.0012 18.4 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_22 PF13401.6 gi|145590491|ref|YP_001152493.1| - 0.0019 18.5 0.1 0.0096 16.2 0.0 2.1 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|145590491|ref|YP_001152493.1| - 0.0031 16.8 0.0 0.0053 16.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|145590491|ref|YP_001152493.1| - 0.0041 16.9 0.0 0.0077 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|145590491|ref|YP_001152493.1| - 0.0053 16.5 0.1 0.063 13.0 0.0 2.6 1 1 1 2 2 2 1 AAA domain DAP3 PF10236.9 gi|145590491|ref|YP_001152493.1| - 0.0053 16.0 0.0 0.01 15.0 0.0 1.4 1 0 0 1 1 1 1 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 gi|145590491|ref|YP_001152493.1| - 0.0058 16.7 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase MEDS PF14417.6 gi|145590491|ref|YP_001152493.1| - 0.0067 16.3 0.0 0.014 15.2 0.0 1.6 1 1 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_5 PF07728.14 gi|145590491|ref|YP_001152493.1| - 0.0078 16.2 0.0 0.028 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.7 gi|145590491|ref|YP_001152493.1| - 0.022 13.7 0.0 0.034 13.1 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_18 PF13238.6 gi|145590491|ref|YP_001152493.1| - 0.027 15.0 0.0 0.099 13.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|145590491|ref|YP_001152493.1| - 0.043 14.2 0.0 0.12 12.7 0.0 1.8 2 0 0 2 2 1 0 RNA helicase NACHT PF05729.12 gi|145590491|ref|YP_001152493.1| - 0.05 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.6 gi|145590491|ref|YP_001152493.1| - 0.067 13.4 0.1 3.8 7.7 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|145590491|ref|YP_001152493.1| - 0.07 13.2 0.0 0.22 11.6 0.0 1.8 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|145590491|ref|YP_001152493.1| - 0.083 13.4 0.0 0.12 12.9 0.0 1.6 1 1 0 1 1 1 0 ABC transporter ATPase_2 PF01637.18 gi|145590491|ref|YP_001152493.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|145590491|ref|YP_001152493.1| - 0.099 11.6 0.8 0.88 8.5 0.0 2.5 2 1 1 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|145590491|ref|YP_001152493.1| - 0.12 12.3 0.1 0.37 10.7 0.1 2.0 1 1 0 1 1 1 0 NTPase AAA_19 PF13245.6 gi|145590491|ref|YP_001152493.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain SNO PF01174.19 gi|145590492|ref|YP_001152494.1| - 2.1e-47 161.4 0.0 2.4e-47 161.2 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|145590492|ref|YP_001152494.1| - 2.7e-06 27.1 0.0 3.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|145590492|ref|YP_001152494.1| - 9.9e-05 22.2 0.0 0.00044 20.1 0.0 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.17 gi|145590492|ref|YP_001152494.1| - 0.00063 19.4 0.0 0.00088 19.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|145590492|ref|YP_001152494.1| - 0.0019 18.0 0.0 0.0032 17.3 0.0 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|145590493|ref|YP_001152495.1| - 1.2e-95 319.2 1.1 1.8e-95 318.6 1.1 1.3 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|145590493|ref|YP_001152495.1| - 5.2e-07 29.2 4.2 2.3e-06 27.1 0.4 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|145590493|ref|YP_001152495.1| - 0.00014 21.1 3.3 0.11 11.6 0.1 3.5 3 1 0 3 3 3 2 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|145590493|ref|YP_001152495.1| - 0.00041 19.9 1.5 0.12 11.9 0.3 3.2 2 1 0 2 2 2 1 Histidine biosynthesis protein IGPS PF00218.21 gi|145590493|ref|YP_001152495.1| - 0.0073 15.5 0.0 0.12 11.5 0.0 2.2 2 0 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|145590493|ref|YP_001152495.1| - 0.0096 15.1 0.3 0.15 11.3 0.0 2.5 2 2 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|145590493|ref|YP_001152495.1| - 0.012 15.0 0.2 0.012 15.0 0.2 2.0 2 0 0 2 2 2 0 Nitronate monooxygenase TetR_C_27 PF17935.1 gi|145590493|ref|YP_001152495.1| - 0.016 15.2 0.2 0.045 13.8 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain OMPdecase PF00215.24 gi|145590493|ref|YP_001152495.1| - 0.033 13.8 0.4 0.53 9.8 0.0 2.4 2 1 0 3 3 3 0 Orotidine 5'-phosphate decarboxylase / HUMPS family PA PF02225.22 gi|145590493|ref|YP_001152495.1| - 0.14 12.2 0.3 0.33 11.0 0.3 1.6 1 0 0 1 1 1 0 PA domain P22_Cro PF14549.6 gi|145590494|ref|YP_001152496.1| - 0.038 13.8 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro TP_methylase PF00590.20 gi|145590495|ref|YP_001152497.1| - 5.6e-31 108.1 1.3 7.3e-31 107.8 1.3 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Phosphatase PF15698.5 gi|145590495|ref|YP_001152497.1| - 0.027 13.6 0.5 0.57 9.3 0.5 2.1 1 1 0 1 1 1 0 Phosphatase Molydop_binding PF01568.21 gi|145590496|ref|YP_001152498.1| - 0.0021 18.1 0.7 0.0033 17.4 0.7 1.3 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain CDC48_2 PF02933.17 gi|145590496|ref|YP_001152498.1| - 0.085 12.7 0.2 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Cell division protein 48 (CDC48), domain 2 DUF4372 PF14294.6 gi|145590497|ref|YP_001152499.1| - 0.13 12.4 0.0 0.96 9.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4372) PseudoU_synth_1 PF01416.20 gi|145590498|ref|YP_001152500.1| - 2e-18 66.8 0.0 4.7e-18 65.6 0.0 1.6 2 0 0 2 2 2 1 tRNA pseudouridine synthase Acetyltransf_1 PF00583.25 gi|145590499|ref|YP_001152501.1| - 8.4e-13 48.6 0.0 1.3e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|145590499|ref|YP_001152501.1| - 2.5e-08 33.8 0.1 3.7e-08 33.2 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|145590499|ref|YP_001152501.1| - 7.2e-07 29.2 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|145590499|ref|YP_001152501.1| - 5.3e-06 26.8 0.0 8.8e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|145590499|ref|YP_001152501.1| - 7.2e-06 25.7 0.1 1e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|145590499|ref|YP_001152501.1| - 8.5e-05 22.6 0.1 0.00014 21.9 0.1 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.7 gi|145590499|ref|YP_001152501.1| - 0.00033 20.8 0.5 0.00057 20.1 0.5 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|145590499|ref|YP_001152501.1| - 0.0018 18.3 0.1 0.013 15.6 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|145590499|ref|YP_001152501.1| - 0.0064 17.2 0.1 0.021 15.5 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain NAD_binding_2 PF03446.15 gi|145590501|ref|YP_001152503.1| - 8.2e-49 165.8 0.2 1.4e-48 165.0 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|145590501|ref|YP_001152503.1| - 1.6e-29 102.6 0.5 2.2e-29 102.2 0.5 1.2 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|145590501|ref|YP_001152503.1| - 1.2e-05 24.8 0.3 4.3e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|145590501|ref|YP_001152503.1| - 8.1e-05 23.1 0.1 0.00053 20.5 0.0 2.2 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|145590501|ref|YP_001152503.1| - 0.00017 21.7 0.0 0.00028 20.9 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|145590501|ref|YP_001152503.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|145590501|ref|YP_001152503.1| - 0.0017 18.3 1.8 0.021 14.7 0.2 2.6 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|145590501|ref|YP_001152503.1| - 0.0031 18.3 0.0 0.006 17.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh PF00984.19 gi|145590501|ref|YP_001152503.1| - 0.017 15.3 0.0 0.043 14.0 0.0 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain DapB_N PF01113.20 gi|145590501|ref|YP_001152503.1| - 0.027 14.6 0.1 0.054 13.6 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ATP-synt_ab PF00006.25 gi|145590502|ref|YP_001152504.1| - 2.8e-64 216.7 0.0 3.6e-64 216.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|145590502|ref|YP_001152504.1| - 3.5e-08 33.9 2.6 8.8e-08 32.6 2.6 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain PaREP1 PF05942.11 gi|145590503|ref|YP_001152505.1| - 2e-21 76.1 0.1 2.4e-21 75.8 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family F420_oxidored PF03807.17 gi|145590503|ref|YP_001152505.1| - 0.083 13.5 0.0 0.12 13.0 0.0 1.3 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Rhomboid PF01694.22 gi|145590504|ref|YP_001152506.1| - 5.9e-32 110.7 6.9 1.1e-31 109.9 6.9 1.4 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|145590504|ref|YP_001152506.1| - 0.01 16.4 0.1 0.031 14.8 0.0 1.8 2 0 0 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) Aldo_ket_red PF00248.21 gi|145590506|ref|YP_001152508.1| - 2.2e-34 119.0 0.0 2e-33 115.8 0.0 1.9 1 1 0 1 1 1 1 Aldo/keto reductase family Pyr_redox_2 PF07992.14 gi|145590507|ref|YP_001152509.1| - 1.3e-16 60.7 0.2 1.5e-15 57.2 0.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145590507|ref|YP_001152509.1| - 3.4e-06 27.5 1.7 0.017 15.6 0.2 2.6 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|145590507|ref|YP_001152509.1| - 0.0003 20.8 0.3 0.032 14.2 0.1 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding DAO PF01266.24 gi|145590507|ref|YP_001152509.1| - 0.00087 19.0 2.4 0.0052 16.4 0.2 2.4 2 1 1 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|145590507|ref|YP_001152509.1| - 0.0013 17.9 0.4 0.0059 15.7 0.2 2.1 3 1 0 3 3 3 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|145590507|ref|YP_001152509.1| - 0.0033 16.3 0.1 0.0066 15.4 0.1 1.4 1 0 0 1 1 1 1 Tryptophan halogenase NAD_binding_8 PF13450.6 gi|145590507|ref|YP_001152509.1| - 0.0046 17.2 0.1 0.014 15.6 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|145590507|ref|YP_001152509.1| - 0.0062 17.0 0.3 0.022 15.2 0.1 2.0 2 0 0 2 2 2 1 Putative NAD(P)-binding K_oxygenase PF13434.6 gi|145590507|ref|YP_001152509.1| - 0.012 14.8 0.1 0.043 12.9 0.1 1.9 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) Shikimate_DH PF01488.20 gi|145590507|ref|YP_001152509.1| - 0.026 14.6 0.3 0.044 13.8 0.3 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_2 PF00890.24 gi|145590507|ref|YP_001152509.1| - 0.044 12.9 0.1 0.045 12.8 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain Malic_M PF03949.15 gi|145590507|ref|YP_001152509.1| - 0.051 12.8 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain TrkA_N PF02254.18 gi|145590507|ref|YP_001152509.1| - 0.061 13.6 0.5 0.21 11.9 0.1 2.1 2 0 0 2 2 2 0 TrkA-N domain DUF5538 PF17692.1 gi|145590507|ref|YP_001152509.1| - 0.067 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5538) AlaDh_PNT_C PF01262.21 gi|145590507|ref|YP_001152509.1| - 0.08 12.2 2.4 0.14 11.4 2.2 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Rieske PF00355.26 gi|145590509|ref|YP_001152511.1| - 1.1e-11 44.5 0.0 1.3e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590509|ref|YP_001152511.1| - 1.7e-09 37.5 0.0 2.2e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Pro_CA PF00484.19 gi|145590512|ref|YP_001152514.1| - 5.1e-08 33.4 0.0 5.4e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase PIN PF01850.21 gi|145590513|ref|YP_001152515.1| - 1e-07 32.5 1.7 1.4e-07 32.0 1.7 1.3 1 1 0 1 1 1 1 PIN domain BacteriocIIc_cy PF12173.8 gi|145590513|ref|YP_001152515.1| - 0.034 14.4 0.0 0.052 13.8 0.0 1.3 1 0 0 1 1 1 0 Bacteriocin class IIc cyclic gassericin A-like Rieske PF00355.26 gi|145590514|ref|YP_001152516.1| - 3.5e-11 42.9 0.0 4e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Jas PF16135.5 gi|145590514|ref|YP_001152516.1| - 0.067 13.4 0.4 0.09 13.0 0.4 1.3 1 0 0 1 1 1 0 TPL-binding domain in jasmonate signalling NTP_transf_2 PF01909.23 gi|145590515|ref|YP_001152517.1| - 5.6e-13 49.0 0.0 6.6e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145590515|ref|YP_001152517.1| - 1.6e-08 34.5 0.0 1.8e-08 34.4 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase YhfZ_C PF14503.6 gi|145590515|ref|YP_001152517.1| - 0.084 12.4 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 YhfZ C-terminal domain DNA_pol_B_palm PF14792.6 gi|145590515|ref|YP_001152517.1| - 0.17 12.1 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|145590516|ref|YP_001152518.1| - 3.5e-27 94.9 0.5 4.4e-27 94.6 0.5 1.1 1 0 0 1 1 1 1 HEPN domain DUF3368 PF11848.8 gi|145590516|ref|YP_001152518.1| - 0.057 13.2 0.0 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) XdhC_C PF13478.6 gi|145590517|ref|YP_001152519.1| - 1.6e-26 93.2 1.0 2.4e-26 92.7 1.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.19 gi|145590517|ref|YP_001152519.1| - 0.0028 17.0 0.1 0.0044 16.4 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|145590517|ref|YP_001152519.1| - 0.15 11.9 1.3 0.72 9.7 1.0 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DNA_pol_B PF00136.21 gi|145590519|ref|YP_001152521.1| - 3.3e-05 22.8 0.0 0.059 12.1 0.0 2.1 2 0 0 2 2 2 2 DNA polymerase family B Macro PF01661.21 gi|145590520|ref|YP_001152522.1| - 2.5e-36 124.3 0.0 3.7e-36 123.8 0.0 1.2 1 0 0 1 1 1 1 Macro domain Topoisom_bac PF01131.20 gi|145590522|ref|YP_001152524.1| - 2.1e-76 257.6 0.0 3.8e-76 256.8 0.0 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|145590522|ref|YP_001152524.1| - 5.3e-21 74.8 0.0 1.7e-20 73.1 0.0 2.0 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|145590522|ref|YP_001152524.1| - 1.1e-14 54.6 0.0 2.8e-14 53.3 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|145590522|ref|YP_001152524.1| - 8.6e-13 47.5 1.5 1.8e-12 46.4 1.5 1.5 1 0 0 1 1 1 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|145590522|ref|YP_001152524.1| - 7.5e-07 29.5 0.0 0.002 18.4 0.0 3.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain AAA_25 PF13481.6 gi|145590522|ref|YP_001152524.1| - 7e-06 25.7 0.1 2.2e-05 24.1 0.1 1.9 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|145590522|ref|YP_001152524.1| - 1.5e-05 25.1 0.0 3.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|145590522|ref|YP_001152524.1| - 0.0048 16.6 0.2 0.013 15.2 0.2 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|145590522|ref|YP_001152524.1| - 0.0073 16.6 0.0 0.033 14.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|145590522|ref|YP_001152524.1| - 0.029 14.0 0.1 0.064 12.9 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MarR_2 PF12802.7 gi|145590522|ref|YP_001152524.1| - 0.045 13.6 0.1 0.52 10.2 0.0 2.9 2 0 0 2 2 2 0 MarR family SecA_DEAD PF07517.14 gi|145590522|ref|YP_001152524.1| - 0.046 13.0 0.1 0.15 11.3 0.1 1.9 1 1 1 2 2 2 0 SecA DEAD-like domain DnaB_C PF03796.15 gi|145590522|ref|YP_001152524.1| - 0.067 12.5 0.0 0.15 11.3 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain DUF87 PF01935.17 gi|145590522|ref|YP_001152524.1| - 0.1 12.7 0.2 0.27 11.3 0.2 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_23 PF13476.6 gi|145590522|ref|YP_001152524.1| - 0.2 12.1 0.2 2 8.9 0.0 2.4 3 0 0 3 3 3 0 AAA domain Apolipoprotein PF01442.18 gi|145590522|ref|YP_001152524.1| - 9.6 6.0 9.5 1.9 8.3 1.3 3.2 3 1 1 4 4 4 0 Apolipoprotein A1/A4/E domain tRNA-synt_1 PF00133.22 gi|145590523|ref|YP_001152525.1| - 1.9e-60 204.8 0.0 4.7e-59 200.2 0.0 2.4 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|145590523|ref|YP_001152525.1| - 4.2e-29 101.5 0.2 3.6e-12 45.7 0.0 3.3 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|145590523|ref|YP_001152525.1| - 4.8e-17 62.3 0.0 1.1e-16 61.2 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|145590523|ref|YP_001152525.1| - 3.5e-11 42.9 0.0 7.3e-11 41.9 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|145590523|ref|YP_001152525.1| - 8.5e-10 38.5 0.0 6.8e-06 25.6 0.0 2.6 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|145590523|ref|YP_001152525.1| - 0.0028 16.6 0.0 0.051 12.5 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) PI3Ka PF00613.20 gi|145590523|ref|YP_001152525.1| - 0.059 12.8 0.4 3.4 7.0 0.1 2.3 2 0 0 2 2 2 0 Phosphoinositide 3-kinase family, accessory domain (PIK domain) DUF4913 PF16259.5 gi|145590523|ref|YP_001152525.1| - 0.11 12.6 0.1 0.35 10.9 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4913) Methyltransf_25 PF13649.6 gi|145590525|ref|YP_001152527.1| - 0.0052 17.5 0.0 0.0074 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|145590525|ref|YP_001152527.1| - 0.014 15.0 0.1 0.019 14.5 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PrmA PF06325.13 gi|145590525|ref|YP_001152527.1| - 0.042 13.2 0.0 0.06 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|145590525|ref|YP_001152527.1| - 0.062 14.0 0.0 0.092 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145590525|ref|YP_001152527.1| - 0.091 12.6 0.0 0.16 11.8 0.0 1.5 1 1 1 2 2 2 0 Methyltransferase domain MetW PF07021.12 gi|145590525|ref|YP_001152527.1| - 0.1 12.2 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_31 PF13847.6 gi|145590525|ref|YP_001152527.1| - 0.16 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain NfeD PF01957.18 gi|145590526|ref|YP_001152528.1| - 5.3e-10 39.5 0.7 5.3e-10 39.5 0.7 1.6 2 0 0 2 2 2 1 NfeD-like C-terminal, partner-binding HTH_24 PF13412.6 gi|145590527|ref|YP_001152529.1| - 1.3e-07 31.0 0.0 2.7e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145590527|ref|YP_001152529.1| - 0.0001 22.1 0.0 0.00017 21.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Ribosomal_S25 PF03297.15 gi|145590527|ref|YP_001152529.1| - 0.0013 18.9 0.0 0.0021 18.2 0.0 1.3 1 0 0 1 1 1 1 S25 ribosomal protein LexA_DNA_bind PF01726.16 gi|145590527|ref|YP_001152529.1| - 0.0022 17.7 0.0 0.0035 17.1 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain HTH_45 PF14947.6 gi|145590527|ref|YP_001152529.1| - 0.02 14.8 0.0 0.029 14.3 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.6 gi|145590527|ref|YP_001152529.1| - 0.06 13.5 0.0 0.098 12.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF3116 PF11313.8 gi|145590527|ref|YP_001152529.1| - 0.074 12.9 0.7 0.15 12.0 0.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3116) TrmB PF01978.19 gi|145590527|ref|YP_001152529.1| - 0.1 12.5 0.0 0.24 11.3 0.0 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB CoA_transf_3 PF02515.17 gi|145590528|ref|YP_001152530.1| - 9.1e-48 163.2 0.0 1.3e-47 162.8 0.0 1.1 1 0 0 1 1 1 1 CoA-transferase family III CoA_transf_3 PF02515.17 gi|145590529|ref|YP_001152531.1| - 2.2e-93 313.3 0.0 2.6e-93 313.1 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Rhomboid PF01694.22 gi|145590530|ref|YP_001152532.1| - 1.1e-37 129.3 16.8 1.7e-37 128.7 16.8 1.2 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.10 gi|145590530|ref|YP_001152532.1| - 0.0044 17.6 0.5 0.0044 17.6 0.5 2.5 3 1 0 3 3 3 1 Eukaryotic integral membrane protein (DUF1751) DUF4389 PF14333.6 gi|145590530|ref|YP_001152532.1| - 0.45 10.5 12.4 0.061 13.3 6.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4389) Radical_SAM PF04055.21 gi|145590531|ref|YP_001152533.1| - 3.1e-10 40.7 0.0 5e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|145590531|ref|YP_001152533.1| - 2.3e-07 30.8 0.9 0.0048 16.7 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) HupH_C PF04809.13 gi|145590531|ref|YP_001152533.1| - 0.2 11.4 0.0 0.39 10.4 0.0 1.4 1 0 0 1 1 1 0 HupH hydrogenase expression protein, C-terminal conserved region ATPase PF06745.13 gi|145590532|ref|YP_001152534.1| - 1.6e-17 63.6 0.0 2.2e-17 63.2 0.0 1.2 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|145590532|ref|YP_001152534.1| - 8.2e-06 25.3 0.0 0.00011 21.7 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|145590532|ref|YP_001152534.1| - 2.7e-05 23.8 0.0 5.2e-05 22.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain Elong_Iki1 PF10483.9 gi|145590532|ref|YP_001152534.1| - 5.7e-05 22.8 0.0 6.2e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Elongator subunit Iki1 IstB_IS21 PF01695.17 gi|145590532|ref|YP_001152534.1| - 0.00025 20.8 0.1 0.00075 19.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein IGR PF09597.10 gi|145590532|ref|YP_001152534.1| - 0.0054 16.8 0.1 0.026 14.6 0.1 2.1 2 0 0 2 2 2 1 IGR protein motif Sigma54_activat PF00158.26 gi|145590532|ref|YP_001152534.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.6 gi|145590532|ref|YP_001152534.1| - 0.023 14.4 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|145590532|ref|YP_001152534.1| - 0.038 14.0 0.0 0.048 13.7 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.22 gi|145590532|ref|YP_001152534.1| - 0.048 13.3 0.0 0.081 12.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|145590532|ref|YP_001152534.1| - 0.059 13.3 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain HEM4 PF02602.15 gi|145590532|ref|YP_001152534.1| - 0.061 12.7 0.2 0.17 11.2 0.1 1.9 2 1 0 2 2 2 0 Uroporphyrinogen-III synthase HemD TsaE PF02367.17 gi|145590532|ref|YP_001152534.1| - 0.1 12.6 0.0 0.24 11.4 0.0 1.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|145590532|ref|YP_001152534.1| - 0.12 12.7 0.1 0.19 12.1 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Metallophos_2 PF12850.7 gi|145590533|ref|YP_001152535.1| - 4.9e-18 65.9 0.0 6.1e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|145590533|ref|YP_001152535.1| - 9.3e-16 57.9 0.2 1.7e-15 57.1 0.2 1.3 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|145590533|ref|YP_001152535.1| - 3.6e-10 40.7 0.0 9.3e-10 39.3 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3017 PF11222.8 gi|145590534|ref|YP_001152536.1| - 1.5 9.1 10.8 0.061 13.6 2.3 2.7 3 1 0 3 3 3 0 Protein of unknown function (DUF3017) RVT_3 PF13456.6 gi|145590536|ref|YP_001152538.1| - 1.3e-20 73.4 0.0 2.2e-20 72.7 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|145590536|ref|YP_001152538.1| - 1.1e-10 41.8 0.0 2.8e-10 40.5 0.0 1.6 1 1 0 1 1 1 1 RNase H DUF3072 PF11272.8 gi|145590536|ref|YP_001152538.1| - 0.074 13.0 0.0 0.22 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3072) OrfB_Zn_ribbon PF07282.11 gi|145590537|ref|YP_001152539.1| - 6.8e-09 35.5 0.0 1.2e-08 34.7 0.0 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Prok-RING_1 PF14446.6 gi|145590537|ref|YP_001152539.1| - 0.0079 16.1 0.4 0.013 15.4 0.4 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|145590537|ref|YP_001152539.1| - 0.0079 16.2 0.4 0.013 15.5 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|145590537|ref|YP_001152539.1| - 0.031 13.7 1.2 0.61 9.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|145590537|ref|YP_001152539.1| - 0.039 14.1 3.6 0.12 12.6 3.7 1.8 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF1272 PF06906.11 gi|145590537|ref|YP_001152539.1| - 0.055 13.6 2.2 0.15 12.1 0.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zinc-ribbons_6 PF07191.12 gi|145590537|ref|YP_001152539.1| - 0.061 13.3 0.3 0.097 12.7 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|145590537|ref|YP_001152539.1| - 0.14 12.4 0.2 2.6 8.4 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon DUF4440 PF14534.6 gi|145590537|ref|YP_001152539.1| - 0.14 12.6 0.1 0.31 11.4 0.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF4440) Zn-ribbon_8 PF09723.10 gi|145590537|ref|YP_001152539.1| - 0.2 11.8 3.3 2.5 8.3 3.3 2.4 1 1 0 1 1 1 0 Zinc ribbon domain YdjO PF14169.6 gi|145590537|ref|YP_001152539.1| - 0.28 10.9 1.0 1.7 8.4 0.3 2.2 1 1 1 2 2 2 0 Cold-inducible protein YdjO Ogr_Delta PF04606.12 gi|145590537|ref|YP_001152539.1| - 0.43 10.6 2.0 3.6 7.6 0.1 2.4 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-NADH-PPase PF09297.11 gi|145590537|ref|YP_001152539.1| - 0.84 9.4 4.5 2.5 7.9 4.5 1.8 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|145590537|ref|YP_001152539.1| - 0.92 9.6 3.2 4.8 7.3 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4065 PF13274.6 gi|145590538|ref|YP_001152540.1| - 0.00023 22.0 0.2 0.0022 18.9 0.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) RTP PF02334.16 gi|145590538|ref|YP_001152540.1| - 0.0058 17.3 0.4 0.65 10.7 0.0 2.1 1 1 1 2 2 2 2 Replication terminator protein TrmB PF01978.19 gi|145590538|ref|YP_001152540.1| - 0.016 15.1 0.0 0.032 14.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB eIF-1a PF01176.19 gi|145590541|ref|YP_001152543.1| - 5.5e-24 83.7 0.2 6.7e-24 83.5 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Prot_ATP_ID_OB PF16450.5 gi|145590541|ref|YP_001152543.1| - 0.059 13.3 0.0 0.087 12.8 0.0 1.2 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain DUF973 PF06157.11 gi|145590542|ref|YP_001152544.1| - 4.6e-23 81.8 17.3 5.3e-23 81.5 17.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|145590542|ref|YP_001152544.1| - 9.6e-05 22.7 24.8 0.00093 19.5 13.4 2.7 1 1 2 3 3 3 3 Protein of unknown function (DUF996) Colicin_V PF02674.16 gi|145590542|ref|YP_001152544.1| - 3.9 7.4 30.7 0.32 10.9 6.1 3.0 1 1 2 3 3 3 0 Colicin V production protein AAA_assoc_C PF09821.9 gi|145590544|ref|YP_001152546.1| - 1.6e-19 70.6 0.0 2.3e-19 70.1 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain ABC_tran PF00005.27 gi|145590545|ref|YP_001152547.1| - 3.2e-34 118.4 0.0 4.2e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590545|ref|YP_001152547.1| - 2.1e-11 44.2 0.3 4.7e-05 23.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|145590545|ref|YP_001152547.1| - 2.2e-05 24.9 0.1 4e-05 24.1 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|145590545|ref|YP_001152547.1| - 0.00017 21.8 0.0 0.00044 20.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|145590545|ref|YP_001152547.1| - 0.00032 20.6 0.0 0.00062 19.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|145590545|ref|YP_001152547.1| - 0.0014 19.1 0.0 0.02 15.3 0.0 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|145590545|ref|YP_001152547.1| - 0.0014 18.3 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|145590545|ref|YP_001152547.1| - 0.0065 16.4 0.0 0.32 10.9 0.0 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|145590545|ref|YP_001152547.1| - 0.0069 16.3 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_28 PF13521.6 gi|145590545|ref|YP_001152547.1| - 0.0079 16.5 0.1 0.032 14.5 0.0 1.9 2 1 0 2 2 2 1 AAA domain ABC_ATPase PF09818.9 gi|145590545|ref|YP_001152547.1| - 0.015 14.1 0.1 0.087 11.6 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SMC_N PF02463.19 gi|145590545|ref|YP_001152547.1| - 0.028 13.9 0.0 3.5 7.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|145590545|ref|YP_001152547.1| - 0.033 14.2 0.1 0.16 11.9 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|145590545|ref|YP_001152547.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Mg_chelatase PF01078.21 gi|145590545|ref|YP_001152547.1| - 0.048 13.1 0.0 0.22 10.9 0.0 2.0 2 1 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|145590545|ref|YP_001152547.1| - 0.048 14.2 0.1 0.1 13.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|145590545|ref|YP_001152547.1| - 0.048 13.8 0.1 0.2 11.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145590545|ref|YP_001152547.1| - 0.057 13.0 0.1 0.13 11.8 0.1 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|145590545|ref|YP_001152547.1| - 0.09 12.9 0.0 0.21 11.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|145590545|ref|YP_001152547.1| - 0.24 11.9 0.1 0.33 11.4 0.1 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|145590546|ref|YP_001152548.1| - 3.6e-20 72.5 50.0 3.8e-13 49.6 13.5 3.5 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component Spermine_synth PF01564.17 gi|145590547|ref|YP_001152549.1| - 2.1e-49 167.5 0.0 2.9e-49 167.1 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|145590547|ref|YP_001152549.1| - 1.6e-10 40.7 0.0 3.4e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|145590547|ref|YP_001152549.1| - 0.0026 18.4 0.0 0.0075 17.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145590547|ref|YP_001152549.1| - 0.0071 17.1 0.0 0.017 15.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|145590547|ref|YP_001152549.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TMF_DNA_bd PF12329.8 gi|145590548|ref|YP_001152550.1| - 2.2e-07 30.8 26.8 0.0034 17.3 4.2 3.4 2 1 1 3 3 3 2 TATA element modulatory factor 1 DNA binding GAS PF13851.6 gi|145590548|ref|YP_001152550.1| - 3.7e-07 29.7 28.2 4.6e-05 22.9 18.3 2.3 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding Spc7 PF08317.11 gi|145590548|ref|YP_001152550.1| - 5.5e-07 28.8 25.9 0.00033 19.6 15.2 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|145590548|ref|YP_001152550.1| - 6.5e-07 29.5 24.0 1.5e-05 25.0 15.8 2.2 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Myosin_tail_1 PF01576.19 gi|145590548|ref|YP_001152550.1| - 1.4e-06 26.5 25.4 2.1e-05 22.6 25.4 1.9 1 1 0 1 1 1 1 Myosin tail MscS_porin PF12795.7 gi|145590548|ref|YP_001152550.1| - 1.6e-06 27.9 39.9 4.3e-05 23.2 24.4 2.1 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain DUF3450 PF11932.8 gi|145590548|ref|YP_001152550.1| - 5.2e-06 26.0 33.6 0.0023 17.3 7.5 3.2 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) DHR10 PF18595.1 gi|145590548|ref|YP_001152550.1| - 5.7e-06 26.4 32.9 0.0014 18.7 4.0 3.2 1 1 2 3 3 3 1 Designed helical repeat protein 10 domain APG6_N PF17675.1 gi|145590548|ref|YP_001152550.1| - 5.7e-06 26.9 33.1 0.00013 22.5 20.0 2.3 1 1 1 2 2 2 2 Apg6 coiled-coil region Lebercilin PF15619.6 gi|145590548|ref|YP_001152550.1| - 7.8e-06 25.7 29.4 0.0012 18.6 17.9 2.8 1 1 0 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease FPP PF05911.11 gi|145590548|ref|YP_001152550.1| - 9.1e-06 24.2 15.8 0.0007 17.9 14.4 2.1 1 1 1 2 2 2 1 Filament-like plant protein, long coiled-coil EzrA PF06160.12 gi|145590548|ref|YP_001152550.1| - 1.2e-05 23.7 22.6 7e-05 21.2 13.5 2.3 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA ATG16 PF08614.11 gi|145590548|ref|YP_001152550.1| - 1.3e-05 25.5 33.9 0.00018 21.8 15.4 2.7 1 1 2 3 3 3 3 Autophagy protein 16 (ATG16) IFT57 PF10498.9 gi|145590548|ref|YP_001152550.1| - 1.7e-05 24.0 20.1 0.081 11.9 3.7 2.6 1 1 0 2 2 2 1 Intra-flagellar transport protein 57 Prefoldin_2 PF01920.20 gi|145590548|ref|YP_001152550.1| - 2.3e-05 24.3 21.7 0.011 15.6 0.4 4.0 2 1 1 3 3 3 2 Prefoldin subunit DUF4201 PF13870.6 gi|145590548|ref|YP_001152550.1| - 2.8e-05 23.9 25.8 0.0013 18.5 20.1 3.0 1 1 2 3 3 3 3 Domain of unknown function (DUF4201) Filament PF00038.21 gi|145590548|ref|YP_001152550.1| - 3.1e-05 23.7 27.5 0.00012 21.8 15.3 2.1 1 1 1 2 2 2 1 Intermediate filament protein Phage_GP20 PF06810.11 gi|145590548|ref|YP_001152550.1| - 3.4e-05 23.7 22.0 9e-05 22.3 7.0 2.8 1 1 1 2 2 2 1 Phage minor structural protein GP20 Laminin_II PF06009.12 gi|145590548|ref|YP_001152550.1| - 3.5e-05 23.8 18.5 0.014 15.4 5.8 2.7 1 1 2 3 3 3 3 Laminin Domain II SHE3 PF17078.5 gi|145590548|ref|YP_001152550.1| - 3.7e-05 23.6 28.9 0.00043 20.1 8.2 2.8 1 1 1 2 2 2 1 SWI5-dependent HO expression protein 3 UPF0242 PF06785.11 gi|145590548|ref|YP_001152550.1| - 7.3e-05 23.0 29.4 0.068 13.3 5.3 3.2 1 1 2 3 3 3 3 Uncharacterised protein family (UPF0242) N-terminus ZapB PF06005.12 gi|145590548|ref|YP_001152550.1| - 7.5e-05 23.1 31.3 0.031 14.7 6.6 3.7 1 1 1 2 2 2 1 Cell division protein ZapB SLATT_5 PF18160.1 gi|145590548|ref|YP_001152550.1| - 7.8e-05 22.1 2.5 7.8e-05 22.1 2.5 2.0 2 1 0 2 2 1 1 SMODS and SLOG-associating 2TM effector domain family 5 Jnk-SapK_ap_N PF09744.9 gi|145590548|ref|YP_001152550.1| - 7.8e-05 22.9 24.4 0.027 14.7 14.5 3.0 1 1 1 2 2 2 2 JNK_SAPK-associated protein-1 DUF1664 PF07889.12 gi|145590548|ref|YP_001152550.1| - 8.2e-05 22.6 12.8 0.12 12.5 3.4 3.2 1 1 3 4 4 4 2 Protein of unknown function (DUF1664) DUF4600 PF15372.6 gi|145590548|ref|YP_001152550.1| - 0.00012 22.5 21.7 0.0037 17.7 7.5 3.4 1 1 2 3 3 3 1 Domain of unknown function (DUF4600) ADIP PF11559.8 gi|145590548|ref|YP_001152550.1| - 0.00012 22.2 29.9 0.05 13.7 10.2 2.7 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding TACC_C PF05010.14 gi|145590548|ref|YP_001152550.1| - 0.00016 21.5 20.2 0.00044 20.1 20.1 1.7 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal HIP1_clath_bdg PF16515.5 gi|145590548|ref|YP_001152550.1| - 0.00022 21.8 24.5 0.00049 20.7 3.9 3.0 2 1 1 3 3 3 1 Clathrin-binding domain of Huntingtin-interacting protein 1 Nup54 PF13874.6 gi|145590548|ref|YP_001152550.1| - 0.00028 21.0 22.8 0.00039 20.5 4.8 2.3 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Tektin PF03148.14 gi|145590548|ref|YP_001152550.1| - 0.00044 19.1 23.6 0.001 17.9 12.6 2.2 1 1 1 2 2 2 1 Tektin family BRE1 PF08647.11 gi|145590548|ref|YP_001152550.1| - 0.00075 19.5 29.9 0.01 15.9 3.6 3.2 1 1 1 3 3 3 2 BRE1 E3 ubiquitin ligase Snapin_Pallidin PF14712.6 gi|145590548|ref|YP_001152550.1| - 0.00076 19.9 24.7 0.029 14.8 6.4 3.3 1 1 2 3 3 3 1 Snapin/Pallidin PspA_IM30 PF04012.12 gi|145590548|ref|YP_001152550.1| - 0.00076 19.1 31.8 0.011 15.3 4.8 3.2 1 1 2 3 3 3 1 PspA/IM30 family FH2 PF02181.23 gi|145590548|ref|YP_001152550.1| - 0.00082 18.6 15.5 0.002 17.3 3.0 3.0 1 1 2 3 3 3 1 Formin Homology 2 Domain GOLGA2L5 PF15070.6 gi|145590548|ref|YP_001152550.1| - 0.00082 18.2 18.3 0.0047 15.6 18.3 2.0 1 1 0 1 1 1 1 Putative golgin subfamily A member 2-like protein 5 Rootletin PF15035.6 gi|145590548|ref|YP_001152550.1| - 0.00085 19.4 26.0 0.071 13.1 17.0 2.1 1 1 1 2 2 2 2 Ciliary rootlet component, centrosome cohesion Prefoldin PF02996.17 gi|145590548|ref|YP_001152550.1| - 0.00093 19.1 26.4 0.047 13.6 3.7 4.4 2 1 2 4 4 4 2 Prefoldin subunit AAA_13 PF13166.6 gi|145590548|ref|YP_001152550.1| - 0.00094 18.0 15.8 0.00094 18.0 15.8 1.5 1 1 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.12 gi|145590548|ref|YP_001152550.1| - 0.001 19.1 14.6 0.22 11.6 2.6 3.1 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus FUSC PF04632.12 gi|145590548|ref|YP_001152550.1| - 0.0012 17.5 16.1 0.0022 16.6 16.1 1.4 1 1 0 1 1 1 1 Fusaric acid resistance protein family Yuri_gagarin PF15934.5 gi|145590548|ref|YP_001152550.1| - 0.0012 18.7 17.2 0.0026 17.7 17.2 1.5 1 1 0 1 1 1 1 Yuri gagarin TPR_MLP1_2 PF07926.12 gi|145590548|ref|YP_001152550.1| - 0.0013 18.8 35.3 0.0021 18.1 20.0 2.6 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein APG17 PF04108.12 gi|145590548|ref|YP_001152550.1| - 0.0013 17.9 18.4 0.021 14.0 10.3 2.1 1 1 1 2 2 2 2 Autophagy protein Apg17 YabA PF06156.13 gi|145590548|ref|YP_001152550.1| - 0.0014 19.2 17.0 0.34 11.6 3.0 3.3 1 1 1 2 2 2 1 Initiation control protein YabA Tropomyosin PF00261.20 gi|145590548|ref|YP_001152550.1| - 0.002 17.5 22.2 0.0041 16.5 10.9 2.3 1 1 0 2 2 2 1 Tropomyosin Fez1 PF06818.15 gi|145590548|ref|YP_001152550.1| - 0.0021 18.6 21.6 0.02 15.3 15.7 2.1 1 1 1 2 2 2 2 Fez1 CENP-Q PF13094.6 gi|145590548|ref|YP_001152550.1| - 0.0021 18.3 27.3 0.019 15.2 12.6 2.7 1 1 1 2 2 2 1 CENP-Q, a CENPA-CAD centromere complex subunit Spc24 PF08286.11 gi|145590548|ref|YP_001152550.1| - 0.0022 18.2 26.9 0.36 11.1 4.2 4.4 1 1 2 3 3 3 1 Spc24 subunit of Ndc80 FlaC_arch PF05377.11 gi|145590548|ref|YP_001152550.1| - 0.0023 18.3 10.2 1.1 9.7 2.0 4.6 1 1 4 5 5 5 0 Flagella accessory protein C (FlaC) Rab5-bind PF09311.11 gi|145590548|ref|YP_001152550.1| - 0.0031 17.0 23.2 0.13 11.7 4.0 3.0 1 1 1 2 2 2 1 Rabaptin-like protein Laminin_I PF06008.14 gi|145590548|ref|YP_001152550.1| - 0.0032 17.2 23.4 0.0051 16.6 23.4 1.2 1 0 0 1 1 1 1 Laminin Domain I DUF724 PF05266.14 gi|145590548|ref|YP_001152550.1| - 0.0032 17.3 16.6 0.069 13.0 6.6 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF724) DUF3584 PF12128.8 gi|145590548|ref|YP_001152550.1| - 0.0033 15.1 22.9 0.0049 14.5 22.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Atg14 PF10186.9 gi|145590548|ref|YP_001152550.1| - 0.0033 16.6 26.2 0.24 10.5 15.3 2.1 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Tropomyosin_1 PF12718.7 gi|145590548|ref|YP_001152550.1| - 0.0037 17.4 25.6 0.02 15.0 17.4 2.3 1 1 1 2 2 2 2 Tropomyosin like WXG100 PF06013.12 gi|145590548|ref|YP_001152550.1| - 0.004 17.4 20.8 0.094 13.0 0.2 4.3 2 1 2 4 4 4 1 Proteins of 100 residues with WXG PKcGMP_CC PF16808.5 gi|145590548|ref|YP_001152550.1| - 0.004 17.0 5.8 0.019 14.8 1.0 3.5 2 1 1 3 3 3 2 Coiled-coil N-terminus of cGMP-dependent protein kinase Prominin PF05478.11 gi|145590548|ref|YP_001152550.1| - 0.0041 15.2 6.6 0.0056 14.7 6.6 1.1 1 0 0 1 1 1 1 Prominin BLOC1_2 PF10046.9 gi|145590548|ref|YP_001152550.1| - 0.0042 17.4 22.5 0.017 15.4 2.4 4.1 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|145590548|ref|YP_001152550.1| - 0.0043 16.9 15.1 0.43 10.4 0.9 3.3 2 1 1 3 3 3 1 Sec34-like family Taxilin PF09728.9 gi|145590548|ref|YP_001152550.1| - 0.0045 16.2 24.7 0.71 9.0 14.5 2.2 1 1 0 1 1 1 1 Myosin-like coiled-coil protein ABC_tran_CTD PF16326.5 gi|145590548|ref|YP_001152550.1| - 0.005 17.1 28.6 0.7 10.2 5.9 4.4 1 1 2 3 3 3 1 ABC transporter C-terminal domain DUF4795 PF16043.5 gi|145590548|ref|YP_001152550.1| - 0.0052 16.4 21.4 0.4 10.3 3.4 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4795) SlyX PF04102.12 gi|145590548|ref|YP_001152550.1| - 0.0054 17.3 28.4 0.83 10.3 2.9 4.3 1 1 2 3 3 3 1 SlyX HOOK PF05622.12 gi|145590548|ref|YP_001152550.1| - 0.0054 14.9 27.3 0.011 13.9 16.1 2.0 1 1 0 2 2 2 1 HOOK protein OmpH PF03938.14 gi|145590548|ref|YP_001152550.1| - 0.0055 17.0 32.8 0.037 14.4 16.2 2.5 1 1 1 2 2 2 1 Outer membrane protein (OmpH-like) CALCOCO1 PF07888.11 gi|145590548|ref|YP_001152550.1| - 0.0065 15.4 7.3 0.0065 15.4 7.3 2.3 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like phiKZ_IP PF12699.7 gi|145590548|ref|YP_001152550.1| - 0.0066 15.6 3.3 0.24 10.5 0.1 2.3 2 0 0 2 2 2 1 phiKZ-like phage internal head proteins FAM76 PF16046.5 gi|145590548|ref|YP_001152550.1| - 0.007 15.8 19.6 0.0091 15.4 11.5 2.1 1 1 1 2 2 2 1 FAM76 protein NPV_P10 PF05531.12 gi|145590548|ref|YP_001152550.1| - 0.0071 16.8 18.7 0.057 13.9 4.2 3.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Fib_alpha PF08702.10 gi|145590548|ref|YP_001152550.1| - 0.0073 16.5 17.0 0.071 13.3 4.6 2.5 1 1 2 3 3 3 3 Fibrinogen alpha/beta chain family Seryl_tRNA_N PF02403.22 gi|145590548|ref|YP_001152550.1| - 0.0077 16.5 22.3 0.72 10.1 5.0 3.2 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain Tup_N PF08581.10 gi|145590548|ref|YP_001152550.1| - 0.0082 16.4 2.8 0.0082 16.4 2.8 3.8 2 1 2 4 4 4 1 Tup N-terminal bZIP_1 PF00170.21 gi|145590548|ref|YP_001152550.1| - 0.0084 16.2 3.0 0.0084 16.2 3.0 4.3 2 2 3 5 5 5 1 bZIP transcription factor STAT_alpha PF01017.20 gi|145590548|ref|YP_001152550.1| - 0.012 15.6 12.3 0.44 10.4 0.2 2.3 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF4407 PF14362.6 gi|145590548|ref|YP_001152550.1| - 0.012 15.0 30.2 26 4.0 30.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) HAUS-augmin3 PF14932.6 gi|145590548|ref|YP_001152550.1| - 0.015 14.9 27.2 0.18 11.3 17.9 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 WEMBL PF05701.11 gi|145590548|ref|YP_001152550.1| - 0.015 14.1 17.5 0.02 13.6 17.5 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light FAD_binding_1 PF00667.20 gi|145590548|ref|YP_001152550.1| - 0.016 14.8 3.1 0.03 13.9 3.1 1.4 1 0 0 1 1 1 0 FAD binding domain ApoO PF09769.9 gi|145590548|ref|YP_001152550.1| - 0.016 15.1 8.5 2.5 8.1 0.2 3.6 2 1 1 3 3 3 0 Apolipoprotein O Troponin PF00992.20 gi|145590548|ref|YP_001152550.1| - 0.016 15.5 16.3 0.23 11.8 2.5 3.2 2 1 1 3 3 3 0 Troponin Macoilin PF09726.9 gi|145590548|ref|YP_001152550.1| - 0.018 13.7 26.5 0.34 9.4 25.7 1.9 1 1 0 1 1 1 0 Macoilin family Rabaptin PF03528.15 gi|145590548|ref|YP_001152550.1| - 0.018 13.7 0.6 0.018 13.7 0.6 2.2 2 0 0 2 2 2 0 Rabaptin DUF3552 PF12072.8 gi|145590548|ref|YP_001152550.1| - 0.019 14.4 1.9 0.019 14.4 1.9 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF3552) DUF641 PF04859.12 gi|145590548|ref|YP_001152550.1| - 0.021 15.2 2.7 0.021 15.2 2.7 3.1 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) TMF_TATA_bd PF12325.8 gi|145590548|ref|YP_001152550.1| - 0.023 14.9 24.7 0.61 10.3 6.7 3.1 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding bZIP_2 PF07716.15 gi|145590548|ref|YP_001152550.1| - 0.023 14.7 3.7 0.023 14.7 3.7 4.4 5 0 0 5 5 3 0 Basic region leucine zipper DUF4472 PF14739.6 gi|145590548|ref|YP_001152550.1| - 0.025 15.3 22.8 0.11 13.2 2.9 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) DUF4349 PF14257.6 gi|145590548|ref|YP_001152550.1| - 0.027 13.9 20.9 0.094 12.2 21.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) CorA PF01544.18 gi|145590548|ref|YP_001152550.1| - 0.029 13.7 18.4 0.4 10.0 11.4 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein FliD_C PF07195.12 gi|145590548|ref|YP_001152550.1| - 0.03 13.8 16.3 0.08 12.3 0.3 3.4 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Mod_r PF07200.13 gi|145590548|ref|YP_001152550.1| - 0.03 14.4 30.1 0.091 12.9 9.7 3.0 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CCDC144C PF14915.6 gi|145590548|ref|YP_001152550.1| - 0.031 13.4 21.9 0.052 12.7 21.9 1.3 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region DivIC PF04977.15 gi|145590548|ref|YP_001152550.1| - 0.031 14.0 34.9 0.16 11.7 5.3 5.0 1 1 4 5 5 5 0 Septum formation initiator Syntaxin-6_N PF09177.11 gi|145590548|ref|YP_001152550.1| - 0.032 14.8 17.8 0.44 11.1 2.8 3.4 1 1 2 3 3 3 0 Syntaxin 6, N-terminal MbeD_MobD PF04899.12 gi|145590548|ref|YP_001152550.1| - 0.032 14.3 20.2 0.37 10.9 0.2 4.3 2 1 3 5 5 4 0 MbeD/MobD like Spectrin PF00435.21 gi|145590548|ref|YP_001152550.1| - 0.035 14.6 20.7 0.077 13.5 2.8 2.9 1 1 1 2 2 2 0 Spectrin repeat DUF4618 PF15397.6 gi|145590548|ref|YP_001152550.1| - 0.035 13.5 16.3 0.39 10.1 16.3 2.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) DUF5082 PF16888.5 gi|145590548|ref|YP_001152550.1| - 0.039 14.2 26.6 2.6 8.3 1.2 3.9 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) Occludin_ELL PF07303.13 gi|145590548|ref|YP_001152550.1| - 0.04 14.6 18.8 0.45 11.3 5.3 3.5 1 1 3 4 4 4 0 Occludin homology domain DUF812 PF05667.11 gi|145590548|ref|YP_001152550.1| - 0.043 12.7 22.2 0.16 10.8 17.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Fungal_TACC PF12709.7 gi|145590548|ref|YP_001152550.1| - 0.044 14.2 2.6 0.044 14.2 2.6 3.7 1 1 3 4 4 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins T3SSipB PF16535.5 gi|145590548|ref|YP_001152550.1| - 0.044 14.3 30.3 0.058 13.9 19.0 2.5 1 1 0 2 2 2 0 Type III cell invasion protein SipB L_lactis_ph-MCP PF06673.11 gi|145590548|ref|YP_001152550.1| - 0.046 12.7 3.1 0.44 9.5 0.1 2.2 2 0 0 2 2 2 0 Lactococcus lactis bacteriophage major capsid protein Fmp27_WPPW PF10359.9 gi|145590548|ref|YP_001152550.1| - 0.046 12.6 15.6 0.66 8.8 7.0 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain DUF573 PF04504.14 gi|145590548|ref|YP_001152550.1| - 0.052 14.2 12.0 1.2 9.8 3.2 3.3 1 1 2 3 3 3 0 Protein of unknown function, DUF573 HMMR_N PF15905.5 gi|145590548|ref|YP_001152550.1| - 0.058 12.9 23.0 0.48 9.8 11.6 2.1 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Hormone_1 PF00103.20 gi|145590548|ref|YP_001152550.1| - 0.061 13.1 4.8 3.3 7.4 0.5 2.4 2 1 0 2 2 2 0 Somatotropin hormone family DivIVA PF05103.13 gi|145590548|ref|YP_001152550.1| - 0.063 13.4 21.9 6 7.0 11.1 3.6 2 1 1 3 3 3 0 DivIVA protein DUF4988 PF16378.5 gi|145590548|ref|YP_001152550.1| - 0.064 12.9 4.4 0.16 11.6 0.8 2.8 3 0 0 3 3 2 0 Domain of unknown function CENP-H PF05837.12 gi|145590548|ref|YP_001152550.1| - 0.065 13.6 27.2 0.71 10.3 5.4 3.3 1 1 2 3 3 3 0 Centromere protein H (CENP-H) Filo_VP35 PF02097.15 gi|145590548|ref|YP_001152550.1| - 0.069 12.2 3.5 0.96 8.5 0.4 2.3 1 1 1 2 2 2 0 Filoviridae VP35 DUF2730 PF10805.8 gi|145590548|ref|YP_001152550.1| - 0.073 13.2 12.0 1.1 9.4 5.0 3.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) FapA PF03961.13 gi|145590548|ref|YP_001152550.1| - 0.074 11.7 19.1 0.032 12.8 5.8 2.6 1 1 2 3 3 3 0 Flagellar Assembly Protein A DUF4686 PF15742.5 gi|145590548|ref|YP_001152550.1| - 0.075 12.2 27.7 0.2 10.7 27.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4686) ERM PF00769.19 gi|145590548|ref|YP_001152550.1| - 0.08 12.8 29.9 0.075 12.8 5.3 2.1 1 1 1 2 2 2 0 Ezrin/radixin/moesin family HrpB7 PF09486.10 gi|145590548|ref|YP_001152550.1| - 0.089 13.2 28.8 0.48 10.8 1.7 3.7 1 1 1 3 3 2 0 Bacterial type III secretion protein (HrpB7) PI3K_P85_iSH2 PF16454.5 gi|145590548|ref|YP_001152550.1| - 0.091 12.3 26.7 1 8.9 1.4 4.0 1 1 2 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DegS PF05384.11 gi|145590548|ref|YP_001152550.1| - 0.1 12.1 22.1 0.32 10.5 5.1 3.1 1 1 2 3 3 3 0 Sensor protein DegS FliJ PF02050.16 gi|145590548|ref|YP_001152550.1| - 0.11 12.8 33.3 0.29 11.3 2.7 3.2 1 1 2 3 3 3 0 Flagellar FliJ protein DUF4200 PF13863.6 gi|145590548|ref|YP_001152550.1| - 0.11 12.9 24.7 0.51 10.7 5.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) MtrB PF05440.12 gi|145590548|ref|YP_001152550.1| - 0.12 12.8 1.1 6.6 7.2 0.0 3.2 2 1 1 4 4 2 0 Tetrahydromethanopterin S-methyltransferase subunit B HAP1_N PF04849.13 gi|145590548|ref|YP_001152550.1| - 0.12 11.5 22.8 0.22 10.7 12.1 2.3 1 1 1 2 2 2 0 HAP1 N-terminal conserved region Lip_prot_lig_C PF10437.9 gi|145590548|ref|YP_001152550.1| - 0.12 12.3 3.4 7.3 6.7 0.2 3.4 1 1 3 4 4 2 0 Bacterial lipoate protein ligase C-terminus CEP63 PF17045.5 gi|145590548|ref|YP_001152550.1| - 0.14 12.0 25.5 0.077 12.9 21.1 1.9 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa She9_MDM33 PF05546.11 gi|145590548|ref|YP_001152550.1| - 0.15 11.9 17.4 0.089 12.6 9.6 2.5 1 1 1 2 2 2 0 She9 / Mdm33 family MAD PF05557.13 gi|145590548|ref|YP_001152550.1| - 0.15 10.4 25.0 0.51 8.6 25.0 1.6 1 1 0 1 1 1 0 Mitotic checkpoint protein TolA_bind_tri PF16331.5 gi|145590548|ref|YP_001152550.1| - 0.16 12.1 30.2 0.42 10.7 2.4 4.0 1 1 2 3 3 3 0 TolA binding protein trimerisation DUF773 PF05600.12 gi|145590548|ref|YP_001152550.1| - 0.17 10.6 20.5 0.57 8.9 0.9 2.3 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 LMBR1 PF04791.16 gi|145590548|ref|YP_001152550.1| - 0.17 10.7 12.3 2.3 7.1 12.3 2.0 1 1 0 1 1 1 0 LMBR1-like membrane protein GrpE PF01025.19 gi|145590548|ref|YP_001152550.1| - 0.19 11.4 26.8 0.059 13.0 4.0 3.8 1 1 1 2 2 1 0 GrpE KxDL PF10241.9 gi|145590548|ref|YP_001152550.1| - 0.19 12.0 16.9 1.6 9.0 0.3 3.6 2 1 2 4 4 4 0 Uncharacterized conserved protein Swi5 PF07061.11 gi|145590548|ref|YP_001152550.1| - 0.2 11.7 22.6 0.12 12.5 2.1 4.3 2 1 1 3 3 3 0 Swi5 Ufd2P_core PF10408.9 gi|145590548|ref|YP_001152550.1| - 0.21 10.1 13.6 1.7 7.2 0.7 2.8 1 1 1 2 2 2 0 Ubiquitin elongating factor core Exonuc_VII_L PF02601.15 gi|145590548|ref|YP_001152550.1| - 0.23 11.0 23.8 0.3 10.6 14.4 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit Cep57_MT_bd PF06657.13 gi|145590548|ref|YP_001152550.1| - 0.24 11.9 22.6 6.5 7.3 2.5 4.6 2 1 3 5 5 5 0 Centrosome microtubule-binding domain of Cep57 Vps5 PF09325.10 gi|145590548|ref|YP_001152550.1| - 0.24 10.9 16.8 5.7 6.4 16.4 2.7 1 1 0 1 1 1 0 Vps5 C terminal like Ax_dynein_light PF10211.9 gi|145590548|ref|YP_001152550.1| - 0.24 11.3 22.6 5.6 6.9 7.0 3.3 1 1 3 4 4 4 0 Axonemal dynein light chain DASH_Dam1 PF08653.10 gi|145590548|ref|YP_001152550.1| - 0.25 11.2 4.5 14 5.6 0.1 3.7 3 2 0 3 3 3 0 DASH complex subunit Dam1 Golgin_A5 PF09787.9 gi|145590548|ref|YP_001152550.1| - 0.26 10.7 24.2 6.9 6.0 3.4 2.3 1 1 0 2 2 2 0 Golgin subfamily A member 5 KASH_CCD PF14662.6 gi|145590548|ref|YP_001152550.1| - 0.31 10.8 25.1 0.43 10.4 12.8 2.2 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH Osmo_CC PF08946.10 gi|145590548|ref|YP_001152550.1| - 0.31 11.3 9.6 1.9 8.8 2.2 3.4 2 2 1 3 3 2 0 Osmosensory transporter coiled coil Med9 PF07544.13 gi|145590548|ref|YP_001152550.1| - 0.31 11.1 21.0 0.7 10.0 2.6 3.3 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Uso1_p115_C PF04871.13 gi|145590548|ref|YP_001152550.1| - 0.33 11.3 34.0 1.4 9.3 6.7 3.4 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region CLZ PF16526.5 gi|145590548|ref|YP_001152550.1| - 0.37 11.2 21.3 0.15 12.5 2.2 3.9 1 1 2 4 4 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DMPK_coil PF08826.10 gi|145590548|ref|YP_001152550.1| - 0.39 10.9 17.4 0.31 11.2 1.6 4.0 2 1 2 4 4 3 0 DMPK coiled coil domain like Sec2p PF06428.11 gi|145590548|ref|YP_001152550.1| - 0.42 10.6 25.0 0.53 10.3 5.0 3.5 1 1 2 3 3 3 0 GDP/GTP exchange factor Sec2p GreA_GreB_N PF03449.15 gi|145590548|ref|YP_001152550.1| - 0.45 10.7 15.0 13 6.0 0.0 4.4 2 1 1 4 4 4 0 Transcription elongation factor, N-terminal V_ATPase_I PF01496.19 gi|145590548|ref|YP_001152550.1| - 0.45 8.4 14.8 0.18 9.7 6.0 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HemX PF04375.14 gi|145590548|ref|YP_001152550.1| - 0.47 9.7 27.9 8.8 5.5 6.9 3.1 1 1 1 2 2 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase EMP24_GP25L PF01105.24 gi|145590548|ref|YP_001152550.1| - 0.49 10.3 8.1 5.3 6.9 0.0 2.8 2 1 0 2 2 2 0 emp24/gp25L/p24 family/GOLD PRKG1_interact PF15898.5 gi|145590548|ref|YP_001152550.1| - 0.52 11.2 27.0 2.7 9.0 8.5 3.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain MCPsignal PF00015.21 gi|145590548|ref|YP_001152550.1| - 0.52 10.1 4.9 8.9 6.1 5.0 2.1 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain NleF_casp_inhib PF16809.5 gi|145590548|ref|YP_001152550.1| - 0.54 10.2 7.0 0.2 11.6 0.4 2.6 1 1 2 3 3 2 0 NleF caspase inhibitor USP8_interact PF08941.10 gi|145590548|ref|YP_001152550.1| - 0.54 10.0 17.2 0.52 10.1 2.7 3.1 1 1 2 3 3 3 0 USP8 interacting DUF4763 PF15960.5 gi|145590548|ref|YP_001152550.1| - 0.6 9.4 24.4 1.5 8.1 10.3 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) Scaffolding_pro PF11418.8 gi|145590548|ref|YP_001152550.1| - 0.61 10.7 10.1 3.8 8.1 0.4 3.4 1 1 3 4 4 2 0 Phi29 scaffolding protein TMPIT PF07851.13 gi|145590548|ref|YP_001152550.1| - 0.67 9.1 18.5 0.56 9.4 7.0 2.9 1 1 2 3 3 3 0 TMPIT-like protein Cluap1 PF10234.9 gi|145590548|ref|YP_001152550.1| - 0.72 9.2 25.6 0.58 9.5 3.4 2.7 1 1 1 2 2 2 0 Clusterin-associated protein-1 DUF5344 PF17279.2 gi|145590548|ref|YP_001152550.1| - 0.73 10.4 18.7 0.55 10.8 1.5 3.8 1 1 2 4 4 4 0 Family of unknown function (DUF5344) AATF-Che1 PF13339.6 gi|145590548|ref|YP_001152550.1| - 0.86 10.3 15.9 1.4e+02 3.1 16.0 2.4 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor BST2 PF16716.5 gi|145590548|ref|YP_001152550.1| - 0.87 10.2 21.9 0.91 10.2 2.1 3.3 2 1 0 2 2 2 0 Bone marrow stromal antigen 2 CENP-K PF11802.8 gi|145590548|ref|YP_001152550.1| - 0.94 9.0 16.9 1.4 8.5 15.7 1.7 1 1 1 2 2 2 0 Centromere-associated protein K JIP_LZII PF16471.5 gi|145590548|ref|YP_001152550.1| - 0.96 9.7 17.3 8.6 6.6 0.1 4.3 1 1 4 5 5 5 0 JNK-interacting protein leucine zipper II THOC7 PF05615.13 gi|145590548|ref|YP_001152550.1| - 0.99 9.7 27.1 1.7 8.9 4.4 3.7 1 1 2 3 3 3 0 Tho complex subunit 7 HALZ PF02183.18 gi|145590548|ref|YP_001152550.1| - 1 9.6 34.6 0.52 10.6 1.5 5.3 2 1 3 5 5 4 0 Homeobox associated leucine zipper XhlA PF10779.9 gi|145590548|ref|YP_001152550.1| - 1.1 9.6 16.4 0.82 9.9 3.3 3.8 2 1 1 4 4 4 0 Haemolysin XhlA COG5 PF10392.9 gi|145590548|ref|YP_001152550.1| - 1.2 9.3 17.9 1.1 9.5 2.0 3.0 1 1 2 3 3 3 0 Golgi transport complex subunit 5 GIT_CC PF16559.5 gi|145590548|ref|YP_001152550.1| - 1.2 9.0 21.1 0.85 9.5 1.3 4.7 2 1 3 5 5 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor Bcr-Abl_Oligo PF09036.10 gi|145590548|ref|YP_001152550.1| - 1.4 9.0 6.9 0.89 9.6 0.7 2.5 2 1 0 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain DUF4446 PF14584.6 gi|145590548|ref|YP_001152550.1| - 1.4 8.9 15.8 7.1 6.6 1.5 3.5 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) Nsp1_C PF05064.13 gi|145590548|ref|YP_001152550.1| - 1.5 8.7 18.2 0.63 9.9 7.7 2.3 1 1 1 2 2 2 0 Nsp1-like C-terminal region FlxA PF14282.6 gi|145590548|ref|YP_001152550.1| - 1.6 8.8 30.0 22 5.1 8.2 4.2 1 1 3 4 4 4 0 FlxA-like protein Phage_GPO PF05929.11 gi|145590548|ref|YP_001152550.1| - 1.7 8.2 19.8 1.7 8.2 1.6 3.0 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Syntaxin PF00804.25 gi|145590548|ref|YP_001152550.1| - 1.7 8.2 16.5 2.2 7.9 7.9 2.2 1 1 1 2 2 2 0 Syntaxin Syntaxin_2 PF14523.6 gi|145590548|ref|YP_001152550.1| - 1.8 9.0 18.9 4 7.8 7.4 2.9 1 1 1 2 2 2 0 Syntaxin-like protein DUF5339 PF17274.2 gi|145590548|ref|YP_001152550.1| - 2 9.4 17.9 1.1 10.1 1.0 3.9 2 1 2 4 4 3 0 Family of unknown function (DUF5339) Sulfatase_C PF14707.6 gi|145590548|ref|YP_001152550.1| - 2.3 9.0 7.1 21 5.9 0.3 3.1 1 1 3 4 4 3 0 C-terminal region of aryl-sulfatase DUF745 PF05335.13 gi|145590548|ref|YP_001152550.1| - 2.3 7.9 26.5 1.5 8.5 9.7 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF745) SKA1 PF07160.12 gi|145590548|ref|YP_001152550.1| - 2.4 7.9 15.9 12 5.7 10.6 2.3 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 TssO PF17561.2 gi|145590548|ref|YP_001152550.1| - 2.4 8.2 13.3 3 8.0 2.7 2.9 1 1 1 3 3 2 0 Type VI secretion system, TssO COG2 PF06148.11 gi|145590548|ref|YP_001152550.1| - 2.5 8.2 15.8 11 6.1 9.8 2.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Pox_A_type_inc PF04508.12 gi|145590548|ref|YP_001152550.1| - 2.5 8.1 7.7 0.31 10.9 0.6 3.1 3 0 0 3 3 1 0 Viral A-type inclusion protein repeat bZIP_Maf PF03131.17 gi|145590548|ref|YP_001152550.1| - 2.7 8.6 28.5 5.1 7.7 1.3 5.0 1 1 4 5 5 5 0 bZIP Maf transcription factor Spc29 PF17082.5 gi|145590548|ref|YP_001152550.1| - 3.3 7.5 15.1 14 5.4 5.6 2.4 1 1 1 2 2 2 0 Spindle Pole Component 29 Erp_C PF06780.11 gi|145590548|ref|YP_001152550.1| - 3.3 7.7 10.0 5.7 6.9 0.9 2.9 1 1 2 3 3 3 0 Erp protein C-terminus 60KD_IMP PF02096.20 gi|145590548|ref|YP_001152550.1| - 3.4 7.5 8.1 2.4 8.0 0.6 2.9 2 1 1 3 3 3 0 60Kd inner membrane protein DUF948 PF06103.11 gi|145590548|ref|YP_001152550.1| - 3.5 8.0 16.5 6.2 7.2 0.9 3.8 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) RmuC PF02646.16 gi|145590548|ref|YP_001152550.1| - 3.5 6.7 20.8 0.72 8.9 0.9 3.4 1 1 4 5 5 4 0 RmuC family Bap31_Bap29_C PF18035.1 gi|145590548|ref|YP_001152550.1| - 3.5 7.7 39.3 0.98 9.5 1.3 5.6 1 1 3 4 4 4 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF2203 PF09969.9 gi|145590548|ref|YP_001152550.1| - 3.7 8.3 17.3 2.3 9.0 1.3 2.9 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF489 PF04356.12 gi|145590548|ref|YP_001152550.1| - 3.8 7.5 13.0 1.1 9.2 1.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF489) Vps52 PF04129.12 gi|145590548|ref|YP_001152550.1| - 4.2 6.0 12.1 11 4.7 7.9 2.0 1 1 1 2 2 2 0 Vps52 / Sac2 family DUF5098 PF17023.5 gi|145590548|ref|YP_001152550.1| - 4.5 6.1 11.6 7.7 5.4 11.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5098) AAA_27 PF13514.6 gi|145590548|ref|YP_001152550.1| - 4.9 6.7 15.7 0.47 10.0 0.6 3.0 1 1 2 3 3 3 0 AAA domain DUF4094 PF13334.6 gi|145590548|ref|YP_001152550.1| - 5 7.6 10.1 5 7.6 0.6 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4094) HalX PF08663.10 gi|145590548|ref|YP_001152550.1| - 5.1 7.5 35.5 22 5.4 3.2 6.2 1 1 3 5 5 5 0 HalX domain Trimer_CC PF08954.11 gi|145590548|ref|YP_001152550.1| - 6.1 6.5 15.3 3.9 7.1 0.9 3.5 3 0 0 3 3 2 0 Trimerisation motif Csm1_N PF18504.1 gi|145590548|ref|YP_001152550.1| - 6.5 7.2 29.1 3.9 7.9 3.7 4.5 2 1 3 5 5 4 0 Csm1 N-terminal domain Bul1_C PF04426.12 gi|145590548|ref|YP_001152550.1| - 6.8 6.0 8.5 8.2 5.7 0.9 2.2 1 1 1 2 2 2 0 Bul1 C terminus DUF16 PF01519.16 gi|145590548|ref|YP_001152550.1| - 6.9 7.2 18.0 29 5.2 2.1 2.8 1 1 1 2 2 1 0 Protein of unknown function DUF16 XLF PF09302.11 gi|145590548|ref|YP_001152550.1| - 6.9 6.8 13.5 1.8 8.7 1.8 2.6 1 1 0 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component DUF4140 PF13600.6 gi|145590548|ref|YP_001152550.1| - 7.2 7.1 31.2 4 7.9 5.2 4.9 2 1 2 4 4 3 0 N-terminal domain of unknown function (DUF4140) PHM7_cyt PF14703.6 gi|145590548|ref|YP_001152550.1| - 7.2 6.8 7.4 1.6 8.9 1.1 2.2 1 1 1 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter Nas2_N PF18265.1 gi|145590548|ref|YP_001152550.1| - 8 6.5 10.9 16 5.5 0.8 3.5 2 1 0 3 3 2 0 Nas2 N_terminal domain DUF3573 PF12097.8 gi|145590548|ref|YP_001152550.1| - 8.2 5.1 6.7 2.7 6.7 1.6 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3573) TSC22 PF01166.18 gi|145590548|ref|YP_001152550.1| - 8.6 6.8 9.0 16 5.9 1.4 3.3 2 1 1 3 3 2 0 TSC-22/dip/bun family Enkurin PF13864.6 gi|145590548|ref|YP_001152550.1| - 9.2 6.8 19.8 10 6.6 2.1 3.4 1 1 0 2 2 2 0 Calmodulin-binding YlqD PF11068.8 gi|145590548|ref|YP_001152550.1| - 9.8 6.6 23.5 2.3 8.6 11.6 2.7 1 1 1 2 2 2 0 YlqD protein ABC-3 PF00950.17 gi|145590549|ref|YP_001152551.1| - 1e-18 67.8 31.5 1.3e-18 67.4 31.5 1.1 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|145590549|ref|YP_001152551.1| - 0.0071 15.4 41.2 0.11 11.5 41.2 2.0 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|145590550|ref|YP_001152552.1| - 4.9e-21 75.7 0.0 7.8e-21 75.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590550|ref|YP_001152552.1| - 3.3e-11 43.6 0.1 3.8e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590550|ref|YP_001152552.1| - 1.1e-06 28.2 0.0 0.021 14.3 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|145590550|ref|YP_001152552.1| - 2.5e-05 24.7 0.0 4.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|145590550|ref|YP_001152552.1| - 0.00011 21.8 0.0 0.0002 21.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|145590550|ref|YP_001152552.1| - 0.00014 21.5 0.0 0.00025 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|145590550|ref|YP_001152552.1| - 0.00034 20.4 0.0 0.25 11.1 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_23 PF13476.6 gi|145590550|ref|YP_001152552.1| - 0.00043 20.8 0.0 0.00084 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|145590550|ref|YP_001152552.1| - 0.0013 17.9 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.6 gi|145590550|ref|YP_001152552.1| - 0.0065 16.7 0.0 0.022 15.0 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|145590550|ref|YP_001152552.1| - 0.0092 16.1 0.1 0.26 11.4 0.1 2.5 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145590550|ref|YP_001152552.1| - 0.019 14.9 0.0 0.12 12.2 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|145590550|ref|YP_001152552.1| - 0.028 14.0 0.0 0.094 12.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|145590550|ref|YP_001152552.1| - 0.058 13.8 0.2 0.24 11.8 0.0 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) tRNA_lig_kinase PF08303.11 gi|145590550|ref|YP_001152552.1| - 0.14 12.3 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 tRNA ligase kinase domain RsgA_GTPase PF03193.16 gi|145590550|ref|YP_001152552.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|145590550|ref|YP_001152552.1| - 0.16 11.7 0.0 9.6 5.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain IF-2B PF01008.17 gi|145590551|ref|YP_001152553.1| - 2.7e-07 30.1 0.2 3e-06 26.6 0.2 2.0 1 1 0 1 1 1 1 Initiation factor 2 subunit family SWIM PF04434.17 gi|145590552|ref|YP_001152554.1| - 3.5e-08 33.0 0.2 5.7e-08 32.3 0.2 1.3 1 0 0 1 1 1 1 SWIM zinc finger DUF2203 PF09969.9 gi|145590553|ref|YP_001152555.1| - 2.5e-23 83.1 0.1 2e-21 77.0 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) DUF4777 PF16007.5 gi|145590553|ref|YP_001152555.1| - 0.029 14.6 0.0 0.059 13.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) RimK PF08443.11 gi|145590554|ref|YP_001152556.1| - 6.3e-42 143.3 0.0 8.2e-42 142.9 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|145590554|ref|YP_001152556.1| - 8.2e-14 52.0 0.0 1.2e-13 51.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|145590554|ref|YP_001152556.1| - 3.5e-13 49.3 0.0 5.1e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|145590554|ref|YP_001152556.1| - 8.7e-10 38.4 0.0 6.5e-09 35.6 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|145590554|ref|YP_001152556.1| - 1.1e-07 31.5 0.0 3.7e-06 26.6 0.0 2.3 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.6 gi|145590554|ref|YP_001152556.1| - 4.7e-07 29.3 0.0 0.00094 18.5 0.0 2.5 1 1 1 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|145590554|ref|YP_001152556.1| - 4.3e-05 23.1 0.0 0.00011 21.9 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|145590554|ref|YP_001152556.1| - 0.0023 17.4 0.2 0.012 15.1 0.2 2.0 1 1 0 1 1 1 1 ATP-grasp domain TTL PF03133.15 gi|145590554|ref|YP_001152556.1| - 0.0067 15.6 0.0 0.019 14.1 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|145590554|ref|YP_001152556.1| - 0.043 13.1 0.0 1 8.6 0.0 2.6 1 1 0 1 1 1 0 YheC/D like ATP-grasp ATP-grasp_4 PF13535.6 gi|145590554|ref|YP_001152556.1| - 0.044 13.4 0.0 0.13 11.9 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain DUF308 PF03729.13 gi|145590556|ref|YP_001152558.1| - 2.5e-05 24.5 0.7 2.8e-05 24.3 0.7 1.1 1 0 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF4282 PF14110.6 gi|145590556|ref|YP_001152558.1| - 0.0016 19.1 1.3 0.0017 19.0 1.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4282) FUSC PF04632.12 gi|145590556|ref|YP_001152558.1| - 0.016 13.8 0.5 0.017 13.7 0.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4190 PF13828.6 gi|145590556|ref|YP_001152558.1| - 0.017 14.8 6.4 0.19 11.5 6.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4190) MARVEL PF01284.23 gi|145590556|ref|YP_001152558.1| - 0.068 13.2 2.1 0.076 13.0 2.1 1.0 1 0 0 1 1 1 0 Membrane-associating domain Rsa3 PF14615.6 gi|145590557|ref|YP_001152559.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribosome-assembly protein 3 DUF1122 PF06557.11 gi|145590558|ref|YP_001152560.1| - 3.5e-34 117.7 0.1 5.1e-34 117.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) PaRep2b PF07775.11 gi|145590559|ref|YP_001152561.1| - 4.7e-66 223.3 6.8 1.1e-34 119.8 0.4 2.1 1 1 1 2 2 2 2 PaRep2b protein CRISPR_Cse1 PF09481.10 gi|145590559|ref|YP_001152561.1| - 0.011 14.9 0.6 0.016 14.3 0.6 1.3 1 0 0 1 1 1 0 CRISPR-associated protein Cse1 (CRISPR_cse1) SLATT_fungal PF18142.1 gi|145590559|ref|YP_001152561.1| - 0.012 15.6 0.4 0.034 14.1 0.4 1.7 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain Fusion_gly PF00523.18 gi|145590559|ref|YP_001152561.1| - 0.02 13.2 5.4 0.029 12.6 5.4 1.2 1 0 0 1 1 1 0 Fusion glycoprotein F0 HisKA_3 PF07730.13 gi|145590559|ref|YP_001152561.1| - 0.02 15.4 1.2 0.072 13.6 1.2 2.0 1 0 0 1 1 1 0 Histidine kinase ParD_antitoxin PF03693.14 gi|145590559|ref|YP_001152561.1| - 0.13 12.6 0.3 7.3 7.1 0.0 2.7 2 0 0 2 2 2 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 5_nucleotid PF05761.14 gi|145590559|ref|YP_001152561.1| - 0.15 11.0 0.1 0.21 10.4 0.1 1.1 1 0 0 1 1 1 0 5' nucleotidase family Methyltransf_11 PF08241.12 gi|145590561|ref|YP_001152563.1| - 0.081 13.6 0.0 0.13 12.9 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Acylphosphatase PF00708.18 gi|145590563|ref|YP_001152565.1| - 1.2e-26 92.9 0.3 1.4e-26 92.7 0.3 1.0 1 0 0 1 1 1 1 Acylphosphatase DeoC PF01791.9 gi|145590564|ref|YP_001152566.1| - 0.00046 19.9 0.1 0.00064 19.4 0.1 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase MarR_2 PF12802.7 gi|145590566|ref|YP_001152568.1| - 1.7e-06 27.8 0.0 4.7e-06 26.4 0.0 1.7 3 0 0 3 3 3 1 MarR family HTH_45 PF14947.6 gi|145590566|ref|YP_001152568.1| - 5.3e-05 23.1 0.0 7.4e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_29 PF13551.6 gi|145590566|ref|YP_001152568.1| - 0.00052 20.0 0.0 0.0022 18.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn helix Rrf2 PF02082.20 gi|145590566|ref|YP_001152568.1| - 0.00053 20.3 0.0 0.00085 19.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator DUF4423 PF14394.6 gi|145590566|ref|YP_001152568.1| - 0.0015 18.3 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.16 gi|145590566|ref|YP_001152568.1| - 0.0055 16.5 0.0 0.0099 15.6 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.19 gi|145590566|ref|YP_001152568.1| - 0.0082 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|145590566|ref|YP_001152568.1| - 0.012 15.6 0.0 0.029 14.4 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|145590566|ref|YP_001152568.1| - 0.017 15.0 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family RuvB_C PF05491.13 gi|145590566|ref|YP_001152568.1| - 0.032 14.1 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_24 PF13412.6 gi|145590566|ref|YP_001152568.1| - 0.033 13.7 0.0 0.05 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|145590566|ref|YP_001152568.1| - 0.092 12.6 0.0 0.24 11.3 0.0 1.7 2 0 0 2 2 1 0 Homeodomain-like domain RNA_pol_Rpc34 PF05158.12 gi|145590566|ref|YP_001152568.1| - 0.095 12.1 0.0 0.11 11.8 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF505 PF04458.12 gi|145590566|ref|YP_001152568.1| - 0.098 11.0 0.0 0.11 10.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DprA_WH PF17782.1 gi|145590566|ref|YP_001152568.1| - 0.13 12.4 0.8 0.28 11.3 0.1 1.9 2 0 0 2 2 2 0 DprA winged helix domain HTH_27 PF13463.6 gi|145590566|ref|YP_001152568.1| - 0.15 12.6 0.0 0.24 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PLDc_2 PF13091.6 gi|145590567|ref|YP_001152569.1| - 1.1e-29 103.0 0.0 4.4e-21 75.2 0.0 2.1 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|145590567|ref|YP_001152569.1| - 0.00014 21.9 4.6 0.042 14.0 0.3 2.5 2 0 0 2 2 2 2 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|145590567|ref|YP_001152569.1| - 0.027 14.0 0.1 0.058 12.9 0.1 1.5 1 0 0 1 1 1 0 Polyphosphate kinase C-terminal domain 1 Regulator_TrmB PF11495.8 gi|145590567|ref|YP_001152569.1| - 0.05 12.8 0.0 0.091 11.9 0.0 1.5 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB Methyltransf_11 PF08241.12 gi|145590568|ref|YP_001152570.1| - 6.2e-16 58.8 0.0 9.5e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145590568|ref|YP_001152570.1| - 1.3e-12 48.2 0.0 2.2e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145590568|ref|YP_001152570.1| - 1.6e-06 28.8 0.0 2.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145590568|ref|YP_001152570.1| - 4.1e-06 26.7 0.0 5.5e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145590568|ref|YP_001152570.1| - 0.00046 20.0 0.0 0.00072 19.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|145590568|ref|YP_001152570.1| - 0.0043 16.4 0.0 0.0058 16.0 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|145590568|ref|YP_001152570.1| - 0.013 15.5 0.1 0.022 14.7 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|145590568|ref|YP_001152570.1| - 0.023 14.8 0.0 0.045 13.9 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase CbiA PF01656.23 gi|145590568|ref|YP_001152570.1| - 0.19 11.8 0.0 0.26 11.4 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain UPF0160 PF03690.13 gi|145590569|ref|YP_001152571.1| - 0.00011 21.9 0.4 0.00029 20.6 0.1 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0160) SMC_ScpB PF04079.16 gi|145590569|ref|YP_001152571.1| - 0.01 15.4 0.0 2.1 8.0 0.0 2.6 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB ABC_tran PF00005.27 gi|145590570|ref|YP_001152572.1| - 4.1e-35 121.3 0.0 6.1e-35 120.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590570|ref|YP_001152572.1| - 1.6e-09 38.0 0.0 0.00039 20.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590570|ref|YP_001152572.1| - 0.00015 21.3 0.2 0.18 11.2 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|145590570|ref|YP_001152572.1| - 0.0014 19.1 0.1 0.0043 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|145590570|ref|YP_001152572.1| - 0.0018 18.0 0.0 0.0038 16.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|145590570|ref|YP_001152572.1| - 0.0041 17.4 0.2 0.043 14.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|145590570|ref|YP_001152572.1| - 0.0085 16.6 0.3 0.018 15.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_24 PF13479.6 gi|145590570|ref|YP_001152572.1| - 0.031 14.0 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|145590570|ref|YP_001152572.1| - 0.031 14.2 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|145590570|ref|YP_001152572.1| - 0.042 14.3 0.2 1.1 9.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DLIC PF05783.11 gi|145590570|ref|YP_001152572.1| - 0.054 12.3 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_25 PF13481.6 gi|145590570|ref|YP_001152572.1| - 0.055 13.1 0.3 0.34 10.5 0.0 2.2 2 1 1 3 3 3 0 AAA domain TOBE_2 PF08402.10 gi|145590570|ref|YP_001152572.1| - 0.055 13.6 0.0 0.14 12.3 0.0 1.8 1 0 0 1 1 1 0 TOBE domain OB_MalK PF17912.1 gi|145590570|ref|YP_001152572.1| - 0.06 14.2 0.1 0.2 12.5 0.1 2.0 1 0 0 1 1 1 0 MalK OB fold domain SbcCD_C PF13558.6 gi|145590570|ref|YP_001152572.1| - 0.066 13.5 0.1 0.51 10.6 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|145590570|ref|YP_001152572.1| - 0.095 12.9 0.3 0.22 11.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145590570|ref|YP_001152572.1| - 0.1 12.5 0.2 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|145590570|ref|YP_001152572.1| - 0.14 11.8 0.1 0.35 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|145590570|ref|YP_001152572.1| - 0.15 11.6 0.0 0.36 10.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|145590570|ref|YP_001152572.1| - 0.17 12.2 0.1 0.46 10.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain Thiolase_N PF00108.23 gi|145590571|ref|YP_001152573.1| - 7.3e-80 268.1 0.0 8.9e-80 267.8 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|145590571|ref|YP_001152573.1| - 1.4e-38 131.3 0.1 3.5e-37 126.8 0.0 2.7 3 0 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|145590571|ref|YP_001152573.1| - 1.3e-06 28.2 2.7 2.7e-06 27.2 1.1 2.1 2 1 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain NAD_synthase PF02540.17 gi|145590572|ref|YP_001152574.1| - 1.1e-70 237.5 0.0 1.4e-70 237.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|145590572|ref|YP_001152574.1| - 4.8e-08 32.2 0.0 2.5e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|145590572|ref|YP_001152574.1| - 0.00027 20.7 0.0 0.00031 20.5 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|145590572|ref|YP_001152574.1| - 0.12 11.9 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC PadR PF03551.14 gi|145590573|ref|YP_001152575.1| - 5.4e-20 71.1 0.9 5.4e-20 71.1 0.9 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_34 PF13601.6 gi|145590573|ref|YP_001152575.1| - 0.00014 21.9 0.0 0.00024 21.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|145590573|ref|YP_001152575.1| - 0.0037 17.3 0.1 0.0053 16.8 0.1 1.3 1 0 0 1 1 1 1 Replication-relaxation Cdc6_C PF09079.11 gi|145590573|ref|YP_001152575.1| - 0.012 15.5 0.5 0.26 11.3 0.0 2.8 2 1 1 3 3 3 0 CDC6, C terminal winged helix domain DUF505 PF04458.12 gi|145590573|ref|YP_001152575.1| - 0.046 12.1 0.4 0.066 11.6 0.1 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF505) DUF2513 PF10711.9 gi|145590573|ref|YP_001152575.1| - 0.052 13.9 0.0 0.22 11.9 0.0 2.0 1 1 0 2 2 2 0 Hypothetical protein (DUF2513) DUF3116 PF11313.8 gi|145590573|ref|YP_001152575.1| - 0.053 13.4 0.1 0.086 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_45 PF14947.6 gi|145590573|ref|YP_001152575.1| - 0.08 12.9 1.6 0.12 12.4 0.1 2.1 3 0 0 3 3 3 0 Winged helix-turn-helix HxlR PF01638.17 gi|145590573|ref|YP_001152575.1| - 0.083 12.7 0.2 0.18 11.7 0.1 1.7 2 0 0 2 2 2 0 HxlR-like helix-turn-helix Herpes_BBRF1 PF04793.12 gi|145590573|ref|YP_001152575.1| - 0.22 10.5 0.1 0.31 10.0 0.1 1.2 1 0 0 1 1 1 0 BRRF1-like protein RNase_HII PF01351.18 gi|145590574|ref|YP_001152576.1| - 5.1e-37 127.6 0.0 5.9e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Ribosomal_S5 PF00333.20 gi|145590575|ref|YP_001152577.1| - 6.6e-24 83.7 0.9 6.6e-24 83.7 0.9 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|145590575|ref|YP_001152577.1| - 7.6e-23 79.8 0.2 1.6e-22 78.7 0.1 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.20 gi|145590576|ref|YP_001152578.1| - 3.3e-12 46.1 0.0 5.4e-12 45.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e GalP_UDP_transf PF01087.22 gi|145590577|ref|YP_001152579.1| - 8e-17 62.3 0.0 4.5e-15 56.5 0.0 2.8 2 1 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.17 gi|145590577|ref|YP_001152579.1| - 7.1e-14 51.9 0.1 1.2e-13 51.1 0.1 1.4 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain HIT PF01230.23 gi|145590577|ref|YP_001152579.1| - 7.2e-10 39.5 0.1 9e-07 29.6 0.0 2.5 2 0 0 2 2 2 2 HIT domain DUF4931 PF16285.5 gi|145590577|ref|YP_001152579.1| - 4e-05 23.1 0.0 8e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4931) DcpS_C PF11969.8 gi|145590577|ref|YP_001152579.1| - 5.5e-05 23.6 0.2 0.00055 20.4 0.1 2.1 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding DUF4921 PF16268.5 gi|145590577|ref|YP_001152579.1| - 0.0023 16.8 0.0 0.0028 16.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4921) GHMP_kinases_N PF00288.26 gi|145590578|ref|YP_001152580.1| - 4.4e-14 52.5 2.4 8.7e-14 51.5 0.5 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|145590578|ref|YP_001152580.1| - 8e-12 45.4 0.6 2.9e-11 43.6 0.1 2.1 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|145590578|ref|YP_001152580.1| - 8.3e-07 28.5 0.0 1.7e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature PCMT PF01135.19 gi|145590578|ref|YP_001152580.1| - 0.11 12.2 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Peptidase_M50 PF02163.22 gi|145590579|ref|YP_001152581.1| - 1.7e-10 40.6 8.8 9e-08 31.7 0.1 3.1 2 1 1 3 3 3 3 Peptidase family M50 BCD PF15461.6 gi|145590579|ref|YP_001152581.1| - 0.24 10.8 12.8 0.021 14.3 8.1 1.6 2 0 0 2 2 2 0 Beta-carotene 15,15'-dioxygenase DUF86 PF01934.17 gi|145590581|ref|YP_001152583.1| - 1.7e-18 66.6 0.0 2e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 Polbeta PF18765.1 gi|145590582|ref|YP_001152584.1| - 4.6e-11 42.7 0.0 6e-11 42.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145590582|ref|YP_001152584.1| - 0.0049 17.1 0.0 0.0064 16.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain PaREP1 PF05942.11 gi|145590583|ref|YP_001152585.1| - 8.2e-27 93.4 1.1 8.2e-27 93.4 1.1 1.9 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Polbeta PF18765.1 gi|145590585|ref|YP_001152587.1| - 1.6e-05 24.9 0.0 2.4e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|145590586|ref|YP_001152588.1| - 3.9e-18 65.5 0.0 4.6e-18 65.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF86 ASL_C PF08328.11 gi|145590586|ref|YP_001152588.1| - 0.073 13.2 0.1 0.12 12.5 0.1 1.5 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminal MazE_antitoxin PF04014.18 gi|145590587|ref|YP_001152589.1| - 4e-13 48.9 2.1 6.2e-13 48.3 2.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|145590587|ref|YP_001152589.1| - 0.0036 17.7 0.0 0.0039 17.6 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|145590590|ref|YP_001152592.1| - 1.8e-10 41.3 0.3 8e-09 36.0 0.3 2.1 1 1 0 1 1 1 1 PIN domain DUF4258 PF14076.6 gi|145590592|ref|YP_001152594.1| - 0.012 15.9 0.1 0.022 15.1 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4258) MIase PF02426.16 gi|145590592|ref|YP_001152594.1| - 0.045 13.9 0.9 4 7.7 0.0 2.1 1 1 1 2 2 2 0 Muconolactone delta-isomerase DUF2283 PF10049.9 gi|145590593|ref|YP_001152595.1| - 9.3e-05 22.6 0.1 0.00013 22.1 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) ATPase_2 PF01637.18 gi|145590594|ref|YP_001152596.1| - 3.2e-61 207.2 0.0 4.1e-61 206.9 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|145590594|ref|YP_001152596.1| - 0.012 16.0 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|145590594|ref|YP_001152596.1| - 0.02 15.1 0.0 0.031 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|145590594|ref|YP_001152596.1| - 0.036 14.4 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ChaC PF04752.12 gi|145590594|ref|YP_001152596.1| - 0.07 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 ChaC-like protein AAA_24 PF13479.6 gi|145590594|ref|YP_001152596.1| - 0.071 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|145590594|ref|YP_001152596.1| - 0.21 11.6 0.0 0.51 10.4 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain PaREP1 PF05942.11 gi|145590595|ref|YP_001152597.1| - 2.4e-30 104.8 1.1 2.4e-30 104.8 1.1 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family ATPase_2 PF01637.18 gi|145590597|ref|YP_001152599.1| - 1.9e-62 211.2 0.0 2.3e-62 210.9 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|145590597|ref|YP_001152599.1| - 0.0021 17.8 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145590597|ref|YP_001152599.1| - 0.0061 16.8 0.0 0.0096 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain MgsA_C PF12002.8 gi|145590597|ref|YP_001152599.1| - 0.04 13.9 0.3 0.095 12.6 0.2 1.6 1 1 1 2 2 2 0 MgsA AAA+ ATPase C terminal AAA_30 PF13604.6 gi|145590597|ref|YP_001152599.1| - 0.048 13.4 0.0 0.18 11.5 0.0 1.8 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|145590597|ref|YP_001152599.1| - 0.052 13.7 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145590597|ref|YP_001152599.1| - 0.052 13.9 0.2 0.13 12.7 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|145590597|ref|YP_001152599.1| - 0.075 13.5 0.0 0.22 12.0 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|145590597|ref|YP_001152599.1| - 0.15 12.0 0.0 0.96 9.4 0.0 2.2 3 0 0 3 3 3 0 NACHT domain AAA_14 PF13173.6 gi|145590597|ref|YP_001152599.1| - 0.21 11.6 0.0 0.4 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1616 PF07760.11 gi|145590599|ref|YP_001152601.1| - 4.5e-32 111.6 11.2 5.9e-32 111.2 11.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) SLATT_1 PF18181.1 gi|145590599|ref|YP_001152601.1| - 0.32 10.9 6.8 0.36 10.8 0.6 2.1 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF4395 PF14340.6 gi|145590599|ref|YP_001152601.1| - 0.5 10.7 13.5 5 7.5 13.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4395) DUF1616 PF07760.11 gi|145590600|ref|YP_001152602.1| - 3.2e-14 53.0 0.0 7.8e-14 51.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1616) ETRAMP PF09716.10 gi|145590600|ref|YP_001152602.1| - 0.26 11.4 4.2 0.55 10.3 0.0 2.2 2 0 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) DUF3357 PF11837.8 gi|145590600|ref|YP_001152602.1| - 0.58 10.6 3.5 8.2 6.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) DUF4179 PF13786.6 gi|145590600|ref|YP_001152602.1| - 1.3 9.6 4.2 2.8 8.5 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) Epimerase PF01370.21 gi|145590601|ref|YP_001152603.1| - 1.8e-51 174.9 0.0 2.5e-51 174.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|145590601|ref|YP_001152603.1| - 1.3e-44 152.9 0.0 6.9e-43 147.3 0.0 2.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|145590601|ref|YP_001152603.1| - 1.8e-26 92.9 0.0 2.4e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|145590601|ref|YP_001152603.1| - 3.3e-11 42.9 0.7 1.6e-08 34.1 0.1 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|145590601|ref|YP_001152603.1| - 1.7e-07 30.6 0.0 2.4e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|145590601|ref|YP_001152603.1| - 2.5e-05 23.6 0.1 0.003 16.8 0.0 2.5 2 1 0 2 2 2 1 Male sterility protein NmrA PF05368.13 gi|145590601|ref|YP_001152603.1| - 3e-05 23.7 0.3 5.8e-05 22.8 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family NAD_binding_10 PF13460.6 gi|145590601|ref|YP_001152603.1| - 0.0016 18.4 0.1 0.0028 17.6 0.1 1.6 1 1 0 1 1 1 1 NAD(P)H-binding adh_short PF00106.25 gi|145590601|ref|YP_001152603.1| - 0.0068 15.9 0.1 0.013 15.0 0.1 1.6 1 0 0 1 1 1 1 short chain dehydrogenase TrkA_N PF02254.18 gi|145590601|ref|YP_001152603.1| - 0.0072 16.6 0.1 0.019 15.2 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|145590601|ref|YP_001152603.1| - 0.016 14.8 0.1 0.025 14.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 gi|145590601|ref|YP_001152603.1| - 0.017 15.3 0.8 0.043 14.1 0.8 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|145590601|ref|YP_001152603.1| - 0.07 13.0 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|145590601|ref|YP_001152603.1| - 0.075 13.1 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|145590601|ref|YP_001152603.1| - 0.21 10.9 0.5 0.5 9.7 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|145590602|ref|YP_001152604.1| - 3.1e-17 62.9 0.0 4.1e-17 62.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|145590602|ref|YP_001152604.1| - 7e-08 32.6 0.0 1.1e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF2730 PF10805.8 gi|145590602|ref|YP_001152604.1| - 0.17 12.0 0.1 0.48 10.5 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) RHH_1 PF01402.21 gi|145590603|ref|YP_001152605.1| - 8.8e-06 25.5 0.5 0.00024 20.9 0.0 2.4 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family CheR_N PF03705.15 gi|145590603|ref|YP_001152605.1| - 0.028 14.2 0.1 0.066 12.9 0.0 1.6 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain POTRA PF07244.15 gi|145590603|ref|YP_001152605.1| - 0.093 13.3 0.1 0.16 12.6 0.1 1.4 1 1 0 1 1 1 0 Surface antigen variable number repeat Phosphodiest PF01663.22 gi|145590604|ref|YP_001152606.1| - 2.7e-43 148.9 0.1 3.3e-43 148.7 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|145590604|ref|YP_001152606.1| - 0.087 12.2 0.0 7.7 5.8 0.0 2.2 2 0 0 2 2 2 0 Sulfatase APS_kinase PF01583.20 gi|145590605|ref|YP_001152607.1| - 1.8e-60 203.4 0.0 2.4e-60 203.0 0.0 1.1 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|145590605|ref|YP_001152607.1| - 1.4e-07 31.8 0.1 2.4e-07 31.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|145590605|ref|YP_001152607.1| - 6e-05 22.6 0.0 6.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|145590605|ref|YP_001152607.1| - 0.00062 20.3 0.0 0.0013 19.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain 6PF2K PF01591.18 gi|145590605|ref|YP_001152607.1| - 0.016 14.6 0.0 0.034 13.5 0.0 1.5 1 1 0 1 1 1 0 6-phosphofructo-2-kinase NTPase_1 PF03266.15 gi|145590605|ref|YP_001152607.1| - 0.017 15.0 0.1 0.076 12.9 0.0 1.9 1 1 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|145590605|ref|YP_001152607.1| - 0.021 14.4 0.7 0.044 13.4 0.3 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145590605|ref|YP_001152607.1| - 0.026 14.9 0.1 0.032 14.6 0.1 1.4 1 1 0 1 1 1 0 AAA ATPase domain CbiA PF01656.23 gi|145590605|ref|YP_001152607.1| - 0.051 13.6 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|145590605|ref|YP_001152607.1| - 0.06 12.3 0.0 0.099 11.6 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|145590605|ref|YP_001152607.1| - 0.061 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin RecA PF00154.21 gi|145590605|ref|YP_001152607.1| - 0.17 11.3 0.0 0.34 10.3 0.0 1.4 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TauE PF01925.19 gi|145590607|ref|YP_001152609.1| - 3.4e-19 69.4 16.5 3.9e-19 69.2 16.5 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE SPC25 PF06703.11 gi|145590607|ref|YP_001152609.1| - 0.14 12.0 0.8 0.26 11.1 0.8 1.4 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) SeqA_N PF17206.3 gi|145590608|ref|YP_001152610.1| - 0.00067 18.9 5.2 0.0025 17.1 0.1 2.1 1 1 1 2 2 2 1 SeqA protein N-terminal domain 3-alpha PF03475.14 gi|145590608|ref|YP_001152610.1| - 0.0033 17.2 0.5 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 3-alpha domain FliG_N PF14842.6 gi|145590608|ref|YP_001152610.1| - 0.045 14.3 0.2 0.048 14.2 0.2 1.1 1 0 0 1 1 1 0 FliG N-terminal domain LID PF17916.1 gi|145590608|ref|YP_001152610.1| - 0.068 12.8 2.0 0.15 11.7 1.4 1.8 2 0 0 2 2 2 0 LIM interaction domain (LID) RmuC PF02646.16 gi|145590608|ref|YP_001152610.1| - 0.088 11.9 0.0 0.097 11.8 0.0 1.1 1 0 0 1 1 1 0 RmuC family RHH_1 PF01402.21 gi|145590608|ref|YP_001152610.1| - 0.097 12.6 0.7 0.097 12.6 0.7 2.0 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family VGCC_beta4Aa_N PF12052.8 gi|145590608|ref|YP_001152610.1| - 3.2 7.9 8.3 1.5 9.0 1.0 2.1 2 0 0 2 2 2 0 Voltage gated calcium channel subunit beta domain 4Aa N terminal Sulfatase PF00884.23 gi|145590609|ref|YP_001152611.1| - 2.2e-21 76.6 0.0 2.8e-20 72.9 0.0 2.1 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|145590609|ref|YP_001152611.1| - 8e-09 35.5 0.1 1.9e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF615 PF04751.14 gi|145590609|ref|YP_001152611.1| - 0.17 11.9 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF615) DUF1501 PF07394.12 gi|145590609|ref|YP_001152611.1| - 0.25 10.4 0.0 0.36 9.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) dTDP_sugar_isom PF00908.17 gi|145590610|ref|YP_001152612.1| - 6.5e-59 198.4 0.0 7.3e-59 198.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase Cupin_1 PF00190.22 gi|145590610|ref|YP_001152612.1| - 0.005 16.5 0.0 0.0075 15.9 0.0 1.3 1 1 0 1 1 1 1 Cupin Cupin_2 PF07883.11 gi|145590610|ref|YP_001152612.1| - 0.045 13.5 0.0 0.075 12.8 0.0 1.3 1 0 0 1 1 1 0 Cupin domain Glyco_transf_4 PF13439.6 gi|145590611|ref|YP_001152613.1| - 0.0002 21.4 1.0 0.0091 16.0 1.0 2.1 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|145590611|ref|YP_001152613.1| - 0.0087 16.5 0.3 0.085 13.3 0.3 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|145590612|ref|YP_001152614.1| - 3.4e-26 91.8 0.0 6.1e-26 91.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590612|ref|YP_001152614.1| - 2.1e-19 70.3 0.0 4.4e-19 69.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|145590612|ref|YP_001152614.1| - 6.9e-19 68.5 0.0 1.2e-18 67.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.6 gi|145590612|ref|YP_001152614.1| - 9.6e-07 28.9 0.3 2e-06 27.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_4_4 PF13579.6 gi|145590612|ref|YP_001152614.1| - 5.5e-06 26.9 0.0 2.7e-05 24.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_5 PF08323.11 gi|145590612|ref|YP_001152614.1| - 4.3e-05 23.3 0.0 0.0064 16.2 0.0 2.2 1 1 0 1 1 1 1 Starch synthase catalytic domain Epimerase_2 PF02350.19 gi|145590612|ref|YP_001152614.1| - 0.0016 17.3 0.0 0.022 13.6 0.0 2.1 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glycos_transf_1 PF00534.20 gi|145590613|ref|YP_001152615.1| - 1.6e-35 122.2 0.0 3.3e-35 121.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590613|ref|YP_001152615.1| - 7e-29 100.9 0.0 1.6e-28 99.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|145590613|ref|YP_001152615.1| - 2.6e-23 82.9 0.5 5.9e-23 81.7 0.5 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|145590613|ref|YP_001152615.1| - 6.7e-12 45.6 0.0 4.8e-11 42.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|145590613|ref|YP_001152615.1| - 2.3e-11 44.4 0.0 4.6e-11 43.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain DUF257 PF03192.13 gi|145590613|ref|YP_001152615.1| - 0.0081 16.0 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Pyrococcus protein of unknown function, DUF257 Glyco_trans_4_2 PF13477.6 gi|145590613|ref|YP_001152615.1| - 0.037 14.1 0.0 0.087 12.8 0.0 1.7 1 0 0 1 1 1 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|145590614|ref|YP_001152616.1| - 4.6e-12 46.1 0.0 6e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|145590614|ref|YP_001152616.1| - 0.00098 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_4 PF13439.6 gi|145590616|ref|YP_001152618.1| - 8.3e-26 91.0 15.6 1.9e-25 89.8 11.4 2.1 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|145590616|ref|YP_001152618.1| - 3e-22 79.8 22.8 9.6e-21 74.9 18.6 2.1 2 0 0 2 2 2 2 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|145590616|ref|YP_001152618.1| - 2.5e-18 66.2 0.0 5.7e-18 65.0 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590616|ref|YP_001152618.1| - 1.6e-15 57.7 0.0 1.8e-13 51.1 0.0 2.6 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|145590616|ref|YP_001152618.1| - 3.6e-06 26.9 4.0 0.0002 21.1 0.2 2.5 1 1 1 2 2 2 2 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.6 gi|145590616|ref|YP_001152618.1| - 1.3e-05 25.2 0.1 8.7e-05 22.6 0.0 2.3 2 1 1 3 3 3 1 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|145590617|ref|YP_001152619.1| - 5.8e-30 104.3 0.1 9.9e-30 103.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|145590617|ref|YP_001152619.1| - 7.4e-20 71.8 0.0 1e-19 71.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|145590617|ref|YP_001152619.1| - 2.7e-05 23.8 0.0 4.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|145590617|ref|YP_001152619.1| - 0.00016 21.7 2.2 0.0011 18.9 0.8 2.3 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.6 gi|145590617|ref|YP_001152619.1| - 0.00029 21.3 0.2 0.00082 19.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|145590617|ref|YP_001152619.1| - 0.00034 20.1 0.0 0.0012 18.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 21 YAcAr PF10686.9 gi|145590617|ref|YP_001152619.1| - 0.05 13.5 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 YspA, cpYpsA-related SLOG family DUF374 PF04028.13 gi|145590617|ref|YP_001152619.1| - 0.18 11.4 0.0 0.43 10.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF374) PaREP1 PF05942.11 gi|145590618|ref|YP_001152620.1| - 2.4e-30 104.8 1.1 2.4e-30 104.8 1.1 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family Tox-REase-9 PF15650.6 gi|145590620|ref|YP_001152622.1| - 0.034 14.5 0.0 0.92 9.8 0.0 2.1 2 0 0 2 2 2 0 Restriction endonuclease fold toxin 9 DpnII-MboI PF18742.1 gi|145590620|ref|YP_001152622.1| - 0.04 13.5 0.1 0.054 13.1 0.1 1.3 1 0 0 1 1 1 0 REase_DpnII-MboI PDDEXK_4 PF14281.6 gi|145590620|ref|YP_001152622.1| - 0.092 12.9 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PaREP1 PF05942.11 gi|145590624|ref|YP_001152626.1| - 1e-28 99.6 2.3 1e-28 99.6 2.3 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family TetR_C_20 PF17925.1 gi|145590624|ref|YP_001152626.1| - 0.028 14.7 3.1 2.1 8.7 0.2 3.1 2 1 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain MazE_antitoxin PF04014.18 gi|145590625|ref|YP_001152627.1| - 8.4e-10 38.3 1.0 1.6e-09 37.4 0.8 1.6 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|145590626|ref|YP_001152628.1| - 1.5e-10 41.7 0.1 1.8e-10 41.4 0.1 1.1 1 0 0 1 1 1 1 PIN domain PaREP1 PF05942.11 gi|145590627|ref|YP_001152629.1| - 1e-32 112.5 1.4 1e-32 112.5 1.4 1.7 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family T3SS_needle_E PF08988.10 gi|145590627|ref|YP_001152629.1| - 0.31 11.2 0.2 0.31 11.2 0.2 3.2 3 1 1 4 4 4 0 Type III secretion system, cytoplasmic E component of needle Amino_oxidase PF01593.24 gi|145590629|ref|YP_001152631.1| - 4.5e-12 46.0 0.7 3.2e-11 43.2 0.7 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|145590629|ref|YP_001152631.1| - 0.001 19.3 0.3 0.0032 17.6 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|145590629|ref|YP_001152631.1| - 0.016 14.8 1.0 0.19 11.3 1.0 2.2 1 1 0 1 1 1 0 FAD dependent oxidoreductase Glycos_transf_1 PF00534.20 gi|145590630|ref|YP_001152632.1| - 2.2e-10 40.3 0.0 7.1e-10 38.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590630|ref|YP_001152632.1| - 3.5e-08 34.0 0.0 7.2e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|145590630|ref|YP_001152632.1| - 4.2e-06 27.1 0.0 8.8e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Radical_SAM PF04055.21 gi|145590630|ref|YP_001152632.1| - 0.048 14.0 0.0 0.091 13.1 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily Glycos_transf_1 PF00534.20 gi|145590631|ref|YP_001152633.1| - 2.9e-16 59.5 0.0 3.9e-16 59.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590631|ref|YP_001152633.1| - 4.1e-15 56.4 0.2 6.1e-15 55.8 0.2 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|145590631|ref|YP_001152633.1| - 0.00024 21.4 0.0 0.00048 20.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_2 PF00535.26 gi|145590632|ref|YP_001152634.1| - 1e-09 38.4 0.1 1e-09 38.4 0.1 1.7 2 1 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|145590632|ref|YP_001152634.1| - 9.5e-08 32.2 0.0 1.2e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|145590632|ref|YP_001152634.1| - 1.2e-05 25.0 0.1 3e-05 23.7 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|145590632|ref|YP_001152634.1| - 0.00011 22.2 0.4 0.0007 19.6 0.4 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|145590632|ref|YP_001152634.1| - 0.00013 21.5 0.0 0.00051 19.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase family 21 Anp1 PF03452.14 gi|145590632|ref|YP_001152634.1| - 0.048 13.1 0.0 0.068 12.6 0.0 1.2 1 0 0 1 1 1 0 Anp1 Glycos_transf_1 PF00534.20 gi|145590633|ref|YP_001152635.1| - 3.2e-18 65.8 0.0 8e-18 64.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590633|ref|YP_001152635.1| - 1.3e-16 61.2 0.1 2.5e-16 60.3 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|145590633|ref|YP_001152635.1| - 8.7e-07 29.1 0.1 2.9e-06 27.4 0.0 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 ALG11_N PF15924.5 gi|145590633|ref|YP_001152635.1| - 0.006 16.7 0.0 0.0089 16.1 0.0 1.3 1 0 0 1 1 1 1 ALG11 mannosyltransferase N-terminus Glyco_trans_1_2 PF13524.6 gi|145590633|ref|YP_001152635.1| - 0.027 14.9 0.0 0.051 14.0 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferases group 1 Peptidase_S9 PF00326.21 gi|145590634|ref|YP_001152636.1| - 7.9e-41 139.9 0.0 1.1e-40 139.4 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|145590634|ref|YP_001152636.1| - 2.4e-10 40.1 0.1 3.4e-07 29.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|145590634|ref|YP_001152636.1| - 2.5e-09 37.1 0.1 0.00036 20.2 0.2 2.5 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|145590634|ref|YP_001152636.1| - 7.5e-09 35.6 0.0 0.00096 18.9 0.0 2.2 1 1 0 2 2 2 2 alpha/beta hydrolase fold PD40 PF07676.12 gi|145590634|ref|YP_001152636.1| - 5.8e-07 29.3 0.4 3.4e-05 23.7 0.0 3.3 4 0 0 4 4 4 1 WD40-like Beta Propeller Repeat Abhydrolase_6 PF12697.7 gi|145590634|ref|YP_001152636.1| - 2.2e-06 28.4 4.0 0.00013 22.7 4.0 2.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase_phd PF10503.9 gi|145590634|ref|YP_001152636.1| - 0.0022 17.5 0.5 0.017 14.6 0.5 2.2 1 1 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_2 PF02230.16 gi|145590634|ref|YP_001152636.1| - 0.013 15.3 0.0 2.8 7.7 0.0 2.7 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|145590634|ref|YP_001152636.1| - 0.018 14.7 0.0 0.094 12.3 0.0 1.9 1 1 0 1 1 1 0 Putative esterase DPPIV_N PF00930.21 gi|145590634|ref|YP_001152636.1| - 0.037 12.8 0.0 0.066 12.0 0.0 1.5 1 0 0 1 1 1 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_3 PF07859.13 gi|145590634|ref|YP_001152636.1| - 0.065 13.1 0.4 0.87 9.4 0.4 2.5 1 1 0 1 1 1 0 alpha/beta hydrolase fold DLH PF01738.18 gi|145590634|ref|YP_001152636.1| - 0.099 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Dienelactone hydrolase family DUF2920 PF11144.8 gi|145590634|ref|YP_001152636.1| - 0.14 11.3 0.0 1.2 8.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Peptidase_S9_N PF02897.15 gi|145590634|ref|YP_001152636.1| - 0.14 10.9 0.0 0.74 8.5 0.0 1.9 2 0 0 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_4 PF08386.10 gi|145590634|ref|YP_001152636.1| - 0.21 11.7 0.0 0.71 10.0 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein Radical_SAM PF04055.21 gi|145590635|ref|YP_001152637.1| - 5e-13 49.8 0.0 8.9e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145590635|ref|YP_001152637.1| - 7.2e-06 26.3 0.0 1.3e-05 25.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145590635|ref|YP_001152637.1| - 0.00062 19.9 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain ATPase_2 PF01637.18 gi|145590636|ref|YP_001152638.1| - 1.2e-19 71.2 0.0 1.9e-19 70.5 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|145590636|ref|YP_001152638.1| - 2.9e-10 40.3 0.0 3.1e-05 24.0 0.0 2.8 2 1 0 3 3 3 2 AAA domain AAA_22 PF13401.6 gi|145590636|ref|YP_001152638.1| - 3.1e-07 30.8 0.0 1.2e-06 28.9 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145590636|ref|YP_001152638.1| - 4.2e-06 27.2 0.1 2e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain DUF4777 PF16007.5 gi|145590636|ref|YP_001152638.1| - 0.012 15.8 0.1 0.084 13.2 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4777) DUF1348 PF07080.11 gi|145590636|ref|YP_001152638.1| - 0.066 13.1 1.0 1.2 9.0 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1348) Nitrate_red_del PF02613.15 gi|145590637|ref|YP_001152639.1| - 0.00014 21.9 0.0 0.0002 21.4 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit DUF1128 PF06569.11 gi|145590637|ref|YP_001152639.1| - 0.022 14.7 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1128) Fer4_11 PF13247.6 gi|145590639|ref|YP_001152641.1| - 1.4e-30 105.4 8.7 1.4e-30 105.4 8.7 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590639|ref|YP_001152641.1| - 9e-16 58.2 29.3 1.9e-08 34.8 10.0 3.3 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145590639|ref|YP_001152641.1| - 7.9e-14 51.5 37.8 3e-07 30.5 9.4 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145590639|ref|YP_001152641.1| - 2.6e-13 49.9 46.1 5.9e-06 26.3 12.3 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145590639|ref|YP_001152641.1| - 2e-12 46.4 41.4 5.7e-09 35.4 2.8 5.9 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145590639|ref|YP_001152641.1| - 4.9e-11 42.2 35.1 7.4e-07 29.0 1.6 4.7 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|145590639|ref|YP_001152641.1| - 2.8e-10 39.6 32.4 7.9e-06 25.7 1.3 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145590639|ref|YP_001152641.1| - 1.4e-09 38.2 44.4 0.00034 21.3 6.0 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|145590639|ref|YP_001152641.1| - 5.4e-06 27.3 23.2 0.082 13.9 4.4 4.4 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|145590639|ref|YP_001152641.1| - 2.7e-05 24.6 20.6 0.65 10.6 7.1 4.3 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145590639|ref|YP_001152641.1| - 0.00066 19.8 28.9 0.064 13.4 9.1 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145590639|ref|YP_001152641.1| - 0.0025 18.2 30.2 0.073 13.5 2.1 4.1 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590639|ref|YP_001152641.1| - 0.0028 18.0 2.7 0.0028 18.0 2.7 4.5 4 1 0 4 4 4 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145590639|ref|YP_001152641.1| - 0.031 15.0 0.4 0.031 15.0 0.4 3.4 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145590639|ref|YP_001152641.1| - 0.04 14.4 2.0 0.04 14.4 2.0 4.1 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I TAT_signal PF10518.9 gi|145590639|ref|YP_001152641.1| - 0.049 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Fer4_22 PF17179.4 gi|145590639|ref|YP_001152641.1| - 0.081 13.8 2.1 0.081 13.8 2.1 3.5 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145590639|ref|YP_001152641.1| - 2.2 8.5 19.7 0.25 11.5 7.5 3.3 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molydop_binding PF01568.21 gi|145590641|ref|YP_001152643.1| - 8.1e-15 54.8 0.0 1.9e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|145590641|ref|YP_001152643.1| - 5.1e-13 48.8 0.0 2.5e-08 33.3 0.0 2.8 2 1 0 2 2 2 2 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|145590641|ref|YP_001152643.1| - 1.6e-05 24.8 2.7 7.4e-05 22.7 2.7 2.1 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|145590641|ref|YP_001152643.1| - 0.019 14.8 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF981 PF06168.11 gi|145590642|ref|YP_001152644.1| - 9.6e-50 169.1 20.5 1.1e-49 169.0 20.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) DUF1418 PF07214.12 gi|145590642|ref|YP_001152644.1| - 0.92 9.4 0.0 0.92 9.4 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) DUF4231 PF14015.6 gi|145590642|ref|YP_001152644.1| - 1.6 9.2 7.5 4.6 7.8 7.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) Bax1-I PF01027.20 gi|145590642|ref|YP_001152644.1| - 1.9 8.3 21.7 6 6.6 21.7 1.9 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF373 PF04123.13 gi|145590642|ref|YP_001152644.1| - 6.9 6.0 15.2 0.41 10.0 3.8 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF373) LysE PF01810.18 gi|145590643|ref|YP_001152645.1| - 1.6e-13 50.6 11.0 2.1e-13 50.2 11.0 1.2 1 0 0 1 1 1 1 LysE type translocator PIN PF01850.21 gi|145590644|ref|YP_001152646.1| - 2.4e-17 63.5 0.2 4.5e-17 62.7 0.2 1.5 1 1 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|145590644|ref|YP_001152646.1| - 0.011 16.0 0.0 0.026 14.7 0.0 1.7 1 1 0 1 1 1 0 PIN domain DUF5615 PF18480.1 gi|145590644|ref|YP_001152646.1| - 0.091 12.5 0.0 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5615) MazE_antitoxin PF04014.18 gi|145590645|ref|YP_001152647.1| - 8.5e-10 38.3 0.2 1.4e-09 37.7 0.2 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|145590645|ref|YP_001152647.1| - 0.00023 21.5 0.0 0.00027 21.3 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin RNA_pol_Rpb5_C PF01191.19 gi|145590645|ref|YP_001152647.1| - 0.0074 16.1 1.8 2.1 8.3 0.1 3.0 1 1 2 3 3 3 2 RNA polymerase Rpb5, C-terminal domain DUF1905 PF08922.11 gi|145590645|ref|YP_001152647.1| - 0.022 14.8 0.1 0.038 14.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Nre_N PF04894.12 gi|145590646|ref|YP_001152648.1| - 8.7e-98 327.4 0.0 1.1e-97 327.0 0.0 1.2 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|145590646|ref|YP_001152648.1| - 2.1e-35 120.9 0.4 5.5e-35 119.6 0.1 1.7 2 0 0 2 2 2 1 Archaeal Nre, C-terminal DUF2452 PF10504.9 gi|145590646|ref|YP_001152648.1| - 0.042 13.3 0.2 0.11 11.9 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2452) SCP2 PF02036.17 gi|145590647|ref|YP_001152649.1| - 5.4e-07 30.0 0.0 7.2e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 SCP-2 sterol transfer family ADH_N PF08240.12 gi|145590648|ref|YP_001152650.1| - 3.7e-33 113.7 0.3 6.4e-33 112.9 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|145590648|ref|YP_001152650.1| - 7.1e-27 94.0 0.4 1.2e-26 93.3 0.4 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|145590648|ref|YP_001152650.1| - 4.5e-07 31.0 0.0 1.2e-06 29.6 0.0 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|145590648|ref|YP_001152650.1| - 4.9e-06 26.0 2.5 8.1e-06 25.3 2.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glu_dehyd_C PF16912.5 gi|145590648|ref|YP_001152650.1| - 1.8e-05 24.4 0.4 2.5e-05 23.9 0.4 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus Sacchrp_dh_NADP PF03435.18 gi|145590648|ref|YP_001152650.1| - 0.0058 16.9 0.5 0.0098 16.1 0.5 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|145590648|ref|YP_001152650.1| - 0.019 15.2 0.4 0.04 14.2 0.4 1.7 1 0 0 1 1 1 0 TrkA-N domain XdhC_C PF13478.6 gi|145590648|ref|YP_001152650.1| - 0.023 15.2 0.1 0.035 14.6 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|145590648|ref|YP_001152650.1| - 0.025 14.5 0.4 0.035 14.0 0.4 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1512 PF07431.12 gi|145590649|ref|YP_001152651.1| - 1.2e-128 429.1 0.8 1.4e-128 428.9 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) RHH_1 PF01402.21 gi|145590651|ref|YP_001152653.1| - 1.7e-13 49.9 0.1 2.4e-13 49.5 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|145590651|ref|YP_001152653.1| - 0.0021 18.2 0.0 0.0022 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family tRNA-synt_2d PF01409.20 gi|145590652|ref|YP_001152654.1| - 2.3e-78 263.1 0.0 2.9e-78 262.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|145590652|ref|YP_001152654.1| - 2.1e-07 30.6 0.0 2.2e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|145590652|ref|YP_001152654.1| - 8.5e-07 28.3 0.0 0.0052 15.9 0.0 3.1 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_Crp_2 PF13545.6 gi|145590652|ref|YP_001152654.1| - 0.47 10.5 2.4 28 4.8 0.0 3.6 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain MazE_antitoxin PF04014.18 gi|145590653|ref|YP_001152655.1| - 0.0011 18.9 0.4 0.0014 18.5 0.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PaREP1 PF05942.11 gi|145590654|ref|YP_001152656.1| - 3.3e-30 104.4 2.3 3.3e-30 104.4 2.3 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family CRA PF06589.11 gi|145590654|ref|YP_001152656.1| - 0.15 12.2 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Circumsporozoite-related antigen (CRA) Asp_decarbox PF02261.16 gi|145590655|ref|YP_001152657.1| - 5.5e-16 58.5 0.0 6.8e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Aspartate decarboxylase CTP_transf_like PF01467.26 gi|145590656|ref|YP_001152658.1| - 4.2e-14 52.9 0.0 4.3e-13 49.7 0.0 2.1 1 1 0 1 1 1 1 Cytidylyltransferase-like ATP-sulfurylase PF01747.17 gi|145590656|ref|YP_001152658.1| - 0.011 15.2 0.0 0.31 10.5 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase HIGH_NTase1 PF05636.11 gi|145590656|ref|YP_001152658.1| - 0.054 12.7 0.0 3.4 6.8 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase Acyl-CoA_dh_1 PF00441.24 gi|145590658|ref|YP_001152660.1| - 4.9e-47 159.9 0.5 9.8e-47 158.9 0.4 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|145590658|ref|YP_001152660.1| - 1.1e-25 90.5 0.0 2.4e-25 89.4 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|145590658|ref|YP_001152660.1| - 6e-20 71.3 0.0 1e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|145590658|ref|YP_001152660.1| - 8.3e-20 71.4 0.0 2.2e-19 70.1 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB PF03241.13 gi|145590658|ref|YP_001152660.1| - 0.014 14.5 0.1 0.038 13.1 0.0 1.8 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Amino_oxidase PF01593.24 gi|145590659|ref|YP_001152661.1| - 7.1e-17 61.8 2.3 6.8e-15 55.3 0.1 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|145590659|ref|YP_001152661.1| - 1.5e-13 50.8 1.2 3.4e-13 49.6 0.5 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|145590659|ref|YP_001152661.1| - 1.3e-09 37.7 2.5 1.7e-05 24.1 1.6 2.3 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|145590659|ref|YP_001152661.1| - 7.3e-07 29.1 6.9 0.00031 20.4 1.4 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145590659|ref|YP_001152661.1| - 5.9e-06 25.7 0.2 3.4e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|145590659|ref|YP_001152661.1| - 4.7e-05 22.9 0.8 7.8e-05 22.2 0.8 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|145590659|ref|YP_001152661.1| - 0.00029 21.3 1.0 0.004 17.7 0.4 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|145590659|ref|YP_001152661.1| - 0.00088 18.1 1.4 0.0032 16.2 0.6 2.1 3 0 0 3 3 3 1 HI0933-like protein GIDA PF01134.22 gi|145590659|ref|YP_001152661.1| - 0.001 18.3 0.6 0.002 17.3 0.2 1.7 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|145590659|ref|YP_001152661.1| - 0.0011 18.3 0.5 0.0021 17.4 0.5 1.4 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|145590659|ref|YP_001152661.1| - 0.014 14.7 0.4 0.028 13.7 0.4 1.5 1 0 0 1 1 1 0 Thi4 family UDPG_MGDP_dh_N PF03721.14 gi|145590659|ref|YP_001152661.1| - 0.026 14.1 0.1 0.044 13.4 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|145590659|ref|YP_001152661.1| - 0.28 11.0 0.3 0.46 10.4 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|145590659|ref|YP_001152661.1| - 0.38 9.9 2.6 0.16 11.2 0.4 1.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase SQS_PSY PF00494.19 gi|145590660|ref|YP_001152662.1| - 1.6e-10 40.9 0.0 2.2e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Glyco_transf_21 PF13506.6 gi|145590661|ref|YP_001152663.1| - 2.8e-06 26.9 0.0 4.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|145590661|ref|YP_001152663.1| - 2.1e-05 24.5 0.3 3.6e-05 23.8 0.3 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|145590661|ref|YP_001152663.1| - 5.7e-05 23.0 0.0 0.00012 22.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|145590661|ref|YP_001152663.1| - 1.1 9.1 6.8 1.9 8.4 6.7 1.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 MFS_1 PF07690.16 gi|145590662|ref|YP_001152664.1| - 1.5e-22 80.0 70.5 8.1e-13 48.0 37.5 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|145590662|ref|YP_001152664.1| - 1.3e-17 63.9 35.4 6e-16 58.4 13.2 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter Hydantoinase_A PF01968.18 gi|145590663|ref|YP_001152665.1| - 2.2e-98 329.1 6.6 2.9e-98 328.7 1.9 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|145590663|ref|YP_001152665.1| - 6.6e-48 162.8 0.0 1.3e-47 161.8 0.0 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region BcrAD_BadFG PF01869.20 gi|145590663|ref|YP_001152665.1| - 0.006 16.1 0.0 0.11 12.0 0.0 2.3 2 1 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DUF2891 PF11199.8 gi|145590663|ref|YP_001152665.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2891) MutL PF13941.6 gi|145590663|ref|YP_001152665.1| - 0.75 8.3 2.6 9.1 4.7 0.3 2.6 2 1 1 3 3 3 0 MutL protein Hydantoinase_B PF02538.14 gi|145590664|ref|YP_001152666.1| - 8.2e-176 585.4 0.1 9.2e-176 585.2 0.1 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF4795 PF16043.5 gi|145590665|ref|YP_001152667.1| - 0.00031 20.4 1.9 0.00036 20.2 1.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) NPV_P10 PF05531.12 gi|145590665|ref|YP_001152667.1| - 0.0031 17.9 5.1 0.0041 17.5 3.0 2.2 1 1 1 2 2 2 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|145590665|ref|YP_001152667.1| - 0.0052 15.7 1.3 0.0059 15.5 1.3 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|145590665|ref|YP_001152667.1| - 0.0062 16.6 0.6 0.0079 16.2 0.6 1.2 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF5532 PF17673.1 gi|145590665|ref|YP_001152667.1| - 0.008 16.2 0.3 0.011 15.8 0.3 1.3 1 0 0 1 1 1 1 Family of unknown function (DUF5532) HMMR_N PF15905.5 gi|145590665|ref|YP_001152667.1| - 0.011 15.3 3.3 0.012 15.1 3.3 1.0 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Baculo_PEP_C PF04513.12 gi|145590665|ref|YP_001152667.1| - 0.016 15.3 4.9 0.022 14.8 4.7 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|145590665|ref|YP_001152667.1| - 0.016 15.5 2.2 0.028 14.7 2.2 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|145590665|ref|YP_001152667.1| - 0.018 15.0 3.6 0.027 14.5 3.6 1.4 1 1 0 1 1 1 0 Laminin Domain II DUF1664 PF07889.12 gi|145590665|ref|YP_001152667.1| - 0.021 14.9 1.6 0.043 13.9 1.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FlxA PF14282.6 gi|145590665|ref|YP_001152667.1| - 0.023 14.7 0.1 0.038 14.0 0.1 1.3 1 0 0 1 1 1 0 FlxA-like protein FlaC_arch PF05377.11 gi|145590665|ref|YP_001152667.1| - 0.036 14.4 1.5 0.036 14.4 1.5 2.1 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) Prominin PF05478.11 gi|145590665|ref|YP_001152667.1| - 0.045 11.7 1.1 0.049 11.6 1.1 1.0 1 0 0 1 1 1 0 Prominin COG2 PF06148.11 gi|145590665|ref|YP_001152667.1| - 0.048 13.8 0.6 0.081 13.0 0.6 1.5 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 KxDL PF10241.9 gi|145590665|ref|YP_001152667.1| - 0.067 13.5 1.4 0.29 11.4 0.7 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein DUF1515 PF07439.11 gi|145590665|ref|YP_001152667.1| - 0.074 13.1 0.7 0.11 12.5 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) Phage_pRha PF09669.10 gi|145590665|ref|YP_001152667.1| - 0.13 12.9 1.0 3.3 8.3 0.3 2.3 1 1 1 2 2 2 0 Phage regulatory protein Rha (Phage_pRha) Med4 PF10018.9 gi|145590665|ref|YP_001152667.1| - 0.17 11.6 2.6 0.2 11.3 2.6 1.2 1 0 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 bZIP_1 PF00170.21 gi|145590665|ref|YP_001152667.1| - 0.17 12.0 2.3 13 5.9 0.2 2.4 2 0 0 2 2 2 0 bZIP transcription factor DHR10 PF18595.1 gi|145590665|ref|YP_001152667.1| - 0.17 11.9 2.7 0.39 10.8 1.5 1.9 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain Syntaxin_2 PF14523.6 gi|145590665|ref|YP_001152667.1| - 0.19 12.1 3.5 0.092 13.1 1.5 1.6 2 0 0 2 2 1 0 Syntaxin-like protein JIP_LZII PF16471.5 gi|145590665|ref|YP_001152667.1| - 0.3 11.3 8.7 1.7 8.9 1.4 2.4 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II DUF4145 PF13643.6 gi|145590665|ref|YP_001152667.1| - 0.38 10.9 2.7 0.58 10.3 1.9 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4145) Radical_SAM PF04055.21 gi|145590668|ref|YP_001152670.1| - 2.6e-14 53.9 0.0 6.7e-14 52.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|145590668|ref|YP_001152670.1| - 6e-07 29.9 0.1 1.6e-06 28.5 0.1 1.8 1 1 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|145590668|ref|YP_001152670.1| - 7.4e-05 23.0 0.0 0.00069 19.9 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145590668|ref|YP_001152670.1| - 0.0063 16.6 0.0 0.033 14.3 0.0 2.2 2 0 0 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.24 gi|145590668|ref|YP_001152670.1| - 0.14 11.6 0.0 0.89 9.0 0.0 2.2 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel LTD PF00932.19 gi|145590670|ref|YP_001152672.1| - 0.0018 18.6 0.0 0.0025 18.2 0.0 1.3 1 0 0 1 1 1 1 Lamin Tail Domain CPBP PF02517.16 gi|145590672|ref|YP_001152674.1| - 2.5e-16 59.8 13.0 2.5e-16 59.8 13.0 3.2 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease PIN PF01850.21 gi|145590673|ref|YP_001152675.1| - 4.8e-14 52.9 0.0 6.7e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain RHH_1 PF01402.21 gi|145590674|ref|YP_001152676.1| - 1.5e-06 27.9 2.0 1.5e-06 27.9 2.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_4 PF13467.6 gi|145590674|ref|YP_001152676.1| - 7e-06 25.8 0.1 8.6e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_5 PF07878.11 gi|145590674|ref|YP_001152676.1| - 0.012 15.5 0.3 0.021 14.7 0.1 1.6 2 0 0 2 2 2 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CcdA PF07362.12 gi|145590674|ref|YP_001152676.1| - 0.017 15.5 0.0 0.03 14.8 0.0 1.4 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA MatP_C PF17414.2 gi|145590674|ref|YP_001152676.1| - 0.037 14.2 0.0 0.056 13.6 0.0 1.3 1 0 0 1 1 1 0 MatP C-terminal ribbon-helix-helix domain IucA_IucC PF04183.12 gi|145590674|ref|YP_001152676.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 IucA / IucC family G-gamma PF00631.22 gi|145590674|ref|YP_001152676.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 GGL domain HTH_24 PF13412.6 gi|145590677|ref|YP_001152679.1| - 2e-12 46.5 0.1 8.5e-08 31.6 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|145590677|ref|YP_001152679.1| - 3.8e-09 36.3 0.1 1.2e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|145590677|ref|YP_001152679.1| - 2.5e-08 33.7 0.0 6.2e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|145590677|ref|YP_001152679.1| - 1.4e-07 31.1 0.2 3.5e-07 29.8 0.1 1.7 2 0 0 2 2 2 1 Homeodomain-like domain HTH_11 PF08279.12 gi|145590677|ref|YP_001152679.1| - 7.5e-07 29.0 0.0 3.2e-05 23.8 0.0 2.2 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|145590677|ref|YP_001152679.1| - 1e-06 28.5 1.0 0.00021 21.0 0.2 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|145590677|ref|YP_001152679.1| - 1.4e-06 28.1 0.0 0.0003 20.7 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|145590677|ref|YP_001152679.1| - 1.9e-05 24.4 0.3 0.23 11.3 0.1 2.3 2 0 0 2 2 2 2 IclR helix-turn-helix domain HTH_38 PF13936.6 gi|145590677|ref|YP_001152679.1| - 2e-05 24.3 0.1 8.2e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145590677|ref|YP_001152679.1| - 7.5e-05 22.5 0.0 0.0029 17.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|145590677|ref|YP_001152679.1| - 7.7e-05 22.7 0.4 0.00024 21.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|145590677|ref|YP_001152679.1| - 0.00028 20.7 0.0 0.16 11.9 0.0 2.1 2 0 0 2 2 2 2 TFIIE alpha subunit HTH_20 PF12840.7 gi|145590677|ref|YP_001152679.1| - 0.00047 20.1 0.2 0.0039 17.2 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|145590677|ref|YP_001152679.1| - 0.00052 20.0 0.1 0.00096 19.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_8 PF02954.19 gi|145590677|ref|YP_001152679.1| - 0.0024 17.6 0.2 0.0048 16.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family Terminase_5 PF06056.12 gi|145590677|ref|YP_001152679.1| - 0.0091 15.9 0.0 0.025 14.4 0.0 1.7 2 0 0 2 2 2 1 Putative ATPase subunit of terminase (gpP-like) GntR PF00392.21 gi|145590677|ref|YP_001152679.1| - 0.015 14.9 0.0 0.22 11.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Sigma70_r4_2 PF08281.12 gi|145590677|ref|YP_001152679.1| - 0.016 14.9 3.5 0.027 14.1 0.2 2.9 3 1 0 3 3 3 0 Sigma-70, region 4 LZ_Tnp_IS481 PF13011.6 gi|145590677|ref|YP_001152679.1| - 0.024 15.2 0.1 0.078 13.5 0.0 1.7 2 0 0 2 2 2 0 leucine-zipper of insertion element IS481 HTH_1 PF00126.27 gi|145590677|ref|YP_001152679.1| - 0.027 14.4 0.0 0.094 12.7 0.0 1.9 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Crp_2 PF13545.6 gi|145590677|ref|YP_001152679.1| - 0.033 14.2 0.0 0.067 13.2 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|145590677|ref|YP_001152679.1| - 0.041 14.1 0.0 0.098 12.9 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|145590677|ref|YP_001152679.1| - 0.046 14.2 0.0 0.33 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|145590677|ref|YP_001152679.1| - 0.087 12.8 0.1 0.29 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|145590677|ref|YP_001152679.1| - 0.14 12.1 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4 PF04545.16 gi|145590677|ref|YP_001152679.1| - 0.15 11.6 0.7 2.1 8.0 0.1 2.6 2 2 0 2 2 2 0 Sigma-70, region 4 KORA PF16509.5 gi|145590677|ref|YP_001152679.1| - 0.2 12.0 0.0 0.9 9.9 0.0 1.9 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_32 PF13565.6 gi|145590677|ref|YP_001152679.1| - 0.27 11.9 3.5 2.4 8.8 0.2 2.6 2 1 1 3 3 3 0 Homeodomain-like domain DUF973 PF06157.11 gi|145590678|ref|YP_001152680.1| - 0.0081 15.2 16.2 0.02 13.9 16.2 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF3561 PF12084.8 gi|145590678|ref|YP_001152680.1| - 4.6 7.3 17.6 6 6.9 6.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3561) DUF3262 PF11660.8 gi|145590678|ref|YP_001152680.1| - 7.2 7.1 11.8 0.95 9.9 3.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3262) VirB8 PF04335.13 gi|145590679|ref|YP_001152681.1| - 0.15 11.8 2.1 0.19 11.5 2.1 1.2 1 0 0 1 1 1 0 VirB8 protein ABC_tran PF00005.27 gi|145590680|ref|YP_001152682.1| - 6.3e-30 104.5 0.0 9.1e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590680|ref|YP_001152682.1| - 5.8e-14 52.6 0.0 7.3e-10 39.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590680|ref|YP_001152682.1| - 6.6e-05 22.5 0.0 0.00032 20.2 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|145590680|ref|YP_001152682.1| - 0.00017 22.0 0.0 0.00038 20.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|145590680|ref|YP_001152682.1| - 0.0043 16.7 0.0 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|145590680|ref|YP_001152682.1| - 0.0047 17.3 0.0 0.014 15.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MeaB PF03308.16 gi|145590680|ref|YP_001152682.1| - 0.0054 15.7 0.0 0.0079 15.2 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB TsaE PF02367.17 gi|145590680|ref|YP_001152682.1| - 0.0062 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|145590680|ref|YP_001152682.1| - 0.0089 15.8 0.1 0.018 14.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145590680|ref|YP_001152682.1| - 0.012 15.6 0.1 0.028 14.4 0.0 1.7 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|145590680|ref|YP_001152682.1| - 0.013 15.7 0.0 0.037 14.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|145590680|ref|YP_001152682.1| - 0.016 14.4 0.0 0.034 13.3 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_29 PF13555.6 gi|145590680|ref|YP_001152682.1| - 0.017 14.8 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|145590680|ref|YP_001152682.1| - 0.018 15.0 0.0 0.036 14.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|145590680|ref|YP_001152682.1| - 0.024 14.5 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.6 gi|145590680|ref|YP_001152682.1| - 0.027 15.0 0.0 0.043 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145590680|ref|YP_001152682.1| - 0.027 14.5 0.0 0.093 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|145590680|ref|YP_001152682.1| - 0.034 14.0 0.0 0.054 13.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|145590680|ref|YP_001152682.1| - 0.04 13.7 0.1 5.9 6.6 0.1 2.5 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF4162 PF13732.6 gi|145590680|ref|YP_001152682.1| - 0.047 14.4 0.0 0.11 13.2 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_7 PF12775.7 gi|145590680|ref|YP_001152682.1| - 0.047 13.2 0.0 0.07 12.6 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|145590680|ref|YP_001152682.1| - 0.054 13.8 0.0 0.18 12.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|145590680|ref|YP_001152682.1| - 0.054 13.2 0.0 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|145590680|ref|YP_001152682.1| - 0.061 12.9 0.4 0.19 11.3 0.4 2.0 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|145590680|ref|YP_001152682.1| - 0.076 12.9 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|145590680|ref|YP_001152682.1| - 0.095 12.4 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|145590680|ref|YP_001152682.1| - 0.095 12.9 0.0 0.53 10.6 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|145590680|ref|YP_001152682.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain DLIC PF05783.11 gi|145590680|ref|YP_001152682.1| - 0.12 11.1 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) KDGP_aldolase PF07071.11 gi|145590680|ref|YP_001152682.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 KDGP aldolase ATP_bind_1 PF03029.17 gi|145590680|ref|YP_001152682.1| - 0.23 11.2 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane PF01061.24 gi|145590681|ref|YP_001152683.1| - 1.6e-09 37.5 20.4 2.2e-09 37.1 20.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|145590681|ref|YP_001152683.1| - 0.00031 20.0 21.4 0.00031 20.0 21.4 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein HTH_20 PF12840.7 gi|145590682|ref|YP_001152684.1| - 8.5e-11 41.8 0.0 1.6e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145590682|ref|YP_001152684.1| - 3.3e-09 36.5 0.1 6.4e-09 35.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|145590682|ref|YP_001152684.1| - 0.00093 19.0 0.3 0.0017 18.2 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|145590682|ref|YP_001152684.1| - 0.0033 16.9 0.6 0.018 14.6 0.0 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|145590682|ref|YP_001152684.1| - 0.0071 16.2 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|145590682|ref|YP_001152684.1| - 0.036 14.0 0.4 0.17 11.8 0.4 2.0 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family EI24 PF07264.11 gi|145590683|ref|YP_001152685.1| - 0.0055 17.0 1.8 0.0073 16.6 1.8 1.0 1 0 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) Phage_holin_3_6 PF07332.11 gi|145590683|ref|YP_001152685.1| - 0.091 12.8 13.5 0.14 12.2 13.5 1.4 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III COMP PF11598.8 gi|145590683|ref|YP_001152685.1| - 0.17 12.3 0.2 0.3 11.6 0.2 1.4 1 0 0 1 1 1 0 Cartilage oligomeric matrix protein DUF2207 PF09972.9 gi|145590683|ref|YP_001152685.1| - 0.44 9.3 1.2 0.48 9.1 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OPT PF03169.15 gi|145590683|ref|YP_001152685.1| - 2.4 6.7 11.2 2.8 6.5 11.2 1.0 1 0 0 1 1 1 0 OPT oligopeptide transporter protein DUF5513 PF17632.2 gi|145590684|ref|YP_001152686.1| - 0.33 11.4 2.5 0.76 10.2 0.7 2.2 1 1 1 2 2 2 0 Family of unknown function (DUF5513) Rieske PF00355.26 gi|145590685|ref|YP_001152687.1| - 4.4e-20 71.4 0.0 8e-20 70.6 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ring_hydroxyl_A PF00848.19 gi|145590685|ref|YP_001152687.1| - 0.091 12.7 0.1 0.42 10.5 0.1 1.8 1 1 0 1 1 1 0 Ring hydroxylating alpha subunit (catalytic domain) PDDEXK_10 PF07788.11 gi|145590686|ref|YP_001152688.1| - 1.4e-30 105.0 1.6 2.5e-30 104.2 1.6 1.4 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|145590686|ref|YP_001152688.1| - 3.5e-23 81.5 6.2 4.5e-23 81.2 1.2 2.8 3 0 0 3 3 3 1 Protein of unknown function (DUF3782) ScsC_N PF18312.1 gi|145590686|ref|YP_001152688.1| - 4.6e-05 23.1 7.3 0.018 14.8 1.3 3.3 2 1 1 3 3 3 2 Copper resistance protein ScsC N-terminal domain Spc7 PF08317.11 gi|145590686|ref|YP_001152688.1| - 0.057 12.3 4.0 0.081 11.8 4.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|145590686|ref|YP_001152688.1| - 0.085 13.4 0.3 0.16 12.5 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF16 Allexi_40kDa PF05549.11 gi|145590686|ref|YP_001152688.1| - 0.097 12.2 0.2 0.14 11.6 0.2 1.2 1 0 0 1 1 1 0 Allexivirus 40kDa protein DUF3175 PF11373.8 gi|145590686|ref|YP_001152688.1| - 0.11 12.7 0.1 0.3 11.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3175) DUF1664 PF07889.12 gi|145590686|ref|YP_001152688.1| - 0.14 12.2 0.3 0.32 11.0 0.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4349 PF14257.6 gi|145590686|ref|YP_001152688.1| - 0.15 11.5 5.7 0.18 11.3 4.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) DUF2730 PF10805.8 gi|145590686|ref|YP_001152688.1| - 0.43 10.7 4.9 0.68 10.1 2.7 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) DUF4140 PF13600.6 gi|145590686|ref|YP_001152688.1| - 0.78 10.2 4.6 2.7 8.5 4.6 2.0 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Fe_dep_repress PF01325.19 gi|145590687|ref|YP_001152689.1| - 7.6e-19 67.7 0.3 1.5e-18 66.7 0.3 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|145590687|ref|YP_001152689.1| - 3.7e-15 55.8 2.4 1.8e-13 50.3 1.5 2.4 2 1 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|145590687|ref|YP_001152689.1| - 7.1e-09 35.4 0.4 1.6e-08 34.3 0.1 1.8 2 1 0 2 2 1 1 MarR family HTH_24 PF13412.6 gi|145590687|ref|YP_001152689.1| - 9.4e-09 34.7 0.0 5e-08 32.4 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|145590687|ref|YP_001152689.1| - 5.4e-07 29.3 1.9 9.8e-07 28.5 0.1 2.3 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR PF01047.22 gi|145590687|ref|YP_001152689.1| - 7.2e-07 29.0 0.0 2e-06 27.6 0.0 1.7 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|145590687|ref|YP_001152689.1| - 7.7e-06 25.7 0.1 2.6e-05 24.0 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|145590687|ref|YP_001152689.1| - 1.4e-05 24.9 0.0 4.8e-05 23.2 0.0 1.9 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|145590687|ref|YP_001152689.1| - 3.4e-05 23.6 0.6 0.0001 22.0 0.2 2.0 3 0 0 3 3 1 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|145590687|ref|YP_001152689.1| - 9.7e-05 21.9 0.4 0.00074 19.1 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Lant_dehydr_N PF04738.13 gi|145590687|ref|YP_001152689.1| - 0.00017 19.8 1.4 0.00019 19.7 1.4 1.0 1 0 0 1 1 1 1 Lantibiotic dehydratase, N terminus HTH_11 PF08279.12 gi|145590687|ref|YP_001152689.1| - 0.00021 21.2 0.2 0.0016 18.4 0.1 2.2 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|145590687|ref|YP_001152689.1| - 0.00022 20.9 0.4 0.011 15.5 0.0 2.7 3 0 0 3 3 3 1 Homeodomain-like domain Rrf2 PF02082.20 gi|145590687|ref|YP_001152689.1| - 0.00035 20.9 0.6 0.00088 19.6 0.2 1.9 1 1 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.6 gi|145590687|ref|YP_001152689.1| - 0.00038 20.9 0.1 0.0013 19.2 0.0 2.0 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|145590687|ref|YP_001152689.1| - 0.00069 19.4 0.0 0.0035 17.2 0.0 2.1 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family Ribosomal_S19e PF01090.19 gi|145590687|ref|YP_001152689.1| - 0.00081 19.1 0.2 0.0015 18.2 0.2 1.5 1 1 0 1 1 1 1 Ribosomal protein S19e HTH_45 PF14947.6 gi|145590687|ref|YP_001152689.1| - 0.00087 19.2 0.0 0.0016 18.3 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DUF977 PF06163.11 gi|145590687|ref|YP_001152689.1| - 0.00098 19.1 0.1 0.0013 18.7 0.1 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_10 PF04967.12 gi|145590687|ref|YP_001152689.1| - 0.0011 18.7 0.3 0.0033 17.2 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_28 PF13518.6 gi|145590687|ref|YP_001152689.1| - 0.0013 18.8 0.1 0.0031 17.6 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|145590687|ref|YP_001152689.1| - 0.0013 18.7 1.1 0.0037 17.3 0.1 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|145590687|ref|YP_001152689.1| - 0.002 18.1 0.1 0.0061 16.6 0.1 1.9 1 1 1 2 2 2 1 Winged helix-turn helix Put_DNA-bind_N PF06971.13 gi|145590687|ref|YP_001152689.1| - 0.0026 17.7 0.8 0.094 12.7 0.2 2.8 3 1 0 3 3 2 1 Putative DNA-binding protein N-terminus KR PF08659.10 gi|145590687|ref|YP_001152689.1| - 0.003 17.5 0.1 0.0038 17.2 0.1 1.1 1 0 0 1 1 1 1 KR domain HTH_36 PF13730.6 gi|145590687|ref|YP_001152689.1| - 0.0031 17.5 0.0 0.009 16.0 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|145590687|ref|YP_001152689.1| - 0.005 16.6 0.1 0.047 13.4 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Mrr_N PF14338.6 gi|145590687|ref|YP_001152689.1| - 0.0088 16.2 1.1 0.083 13.0 0.1 2.6 2 1 0 3 3 3 1 Mrr N-terminal domain HTH_1 PF00126.27 gi|145590687|ref|YP_001152689.1| - 0.011 15.6 2.5 0.015 15.3 0.9 2.1 2 1 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Topoisom_bac PF01131.20 gi|145590687|ref|YP_001152689.1| - 0.012 14.6 0.1 0.014 14.4 0.1 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_34 PF13601.6 gi|145590687|ref|YP_001152689.1| - 0.019 15.2 0.1 0.069 13.3 0.1 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain SMC_ScpB PF04079.16 gi|145590687|ref|YP_001152689.1| - 0.026 14.1 0.4 0.034 13.8 0.4 1.3 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB DUF4455 PF14643.6 gi|145590687|ref|YP_001152689.1| - 0.03 13.0 0.1 0.045 12.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) T2SSK PF03934.13 gi|145590687|ref|YP_001152689.1| - 0.042 13.2 0.1 2.1 7.7 0.0 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein K DUF4423 PF14394.6 gi|145590687|ref|YP_001152689.1| - 0.044 13.5 0.0 0.1 12.3 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) FtsK_gamma PF09397.10 gi|145590687|ref|YP_001152689.1| - 0.055 13.3 0.4 0.13 12.1 0.1 1.7 2 0 0 2 2 1 0 Ftsk gamma domain HTH_DeoR PF08220.12 gi|145590687|ref|YP_001152689.1| - 0.056 13.2 0.1 0.29 10.9 0.0 2.2 2 1 1 3 3 2 0 DeoR-like helix-turn-helix domain HHH_5 PF14520.6 gi|145590687|ref|YP_001152689.1| - 0.065 13.9 0.8 5.7 7.6 0.2 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain RuvB_C PF05491.13 gi|145590687|ref|YP_001152689.1| - 0.073 13.0 0.8 0.3 11.0 0.1 2.3 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_3 PF01381.22 gi|145590687|ref|YP_001152689.1| - 0.073 13.1 0.4 3.6 7.7 0.0 2.8 2 1 1 3 3 3 0 Helix-turn-helix PaaX PF07848.12 gi|145590687|ref|YP_001152689.1| - 0.091 13.0 0.4 3.4 7.9 0.1 2.6 1 1 1 2 2 2 0 PaaX-like protein LexA_DNA_bind PF01726.16 gi|145590687|ref|YP_001152689.1| - 0.091 12.5 0.0 0.25 11.1 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain RPAP1_N PF08621.10 gi|145590687|ref|YP_001152689.1| - 0.092 12.5 1.1 1.3 8.9 0.5 2.5 2 0 0 2 2 2 0 RPAP1-like, N-terminal DUF1967 PF09269.11 gi|145590687|ref|YP_001152689.1| - 0.11 12.5 0.1 0.63 10.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) HTH_6 PF01418.17 gi|145590687|ref|YP_001152689.1| - 0.13 12.3 0.1 1.3 9.1 0.0 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain, rpiR family Nramp PF01566.18 gi|145590688|ref|YP_001152690.1| - 1.5e-64 218.2 21.9 2.3e-64 217.7 21.9 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein PEGSRP PF07623.11 gi|145590689|ref|YP_001152691.1| - 0.25 11.2 1.2 0.61 9.9 1.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1584) PBP_like_2 PF12849.7 gi|145590690|ref|YP_001152692.1| - 8.9e-49 166.7 4.7 1.3e-48 166.1 4.7 1.2 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|145590690|ref|YP_001152692.1| - 3.8e-05 22.9 0.0 0.00012 21.2 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain FixQ PF05545.11 gi|145590690|ref|YP_001152692.1| - 0.0041 17.1 0.3 0.016 15.2 0.3 2.0 1 0 0 1 1 1 1 Cbb3-type cytochrome oxidase component FixQ BPD_transp_1 PF00528.22 gi|145590691|ref|YP_001152693.1| - 1.6e-10 41.0 18.7 1.6e-10 41.0 18.7 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component GTA_holin_3TM PF11351.8 gi|145590691|ref|YP_001152693.1| - 9.2 6.8 8.5 1.4 9.5 0.1 3.1 3 1 1 4 4 4 0 Holin of 3TMs, for gene-transfer release BPD_transp_1 PF00528.22 gi|145590692|ref|YP_001152694.1| - 1.2e-11 44.7 18.0 1.2e-11 44.7 18.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|145590693|ref|YP_001152695.1| - 1.2e-31 110.0 0.0 1.7e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590693|ref|YP_001152695.1| - 4.6e-11 43.1 0.1 3.4e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590693|ref|YP_001152695.1| - 6.2e-09 35.6 0.0 1.3e-08 34.5 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|145590693|ref|YP_001152695.1| - 1.9e-05 24.9 0.0 4.1e-05 23.9 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145590693|ref|YP_001152695.1| - 4.8e-05 23.0 0.0 9.2e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|145590693|ref|YP_001152695.1| - 0.00015 21.6 0.0 0.024 14.3 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|145590693|ref|YP_001152695.1| - 0.0011 19.5 0.0 0.0046 17.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|145590693|ref|YP_001152695.1| - 0.0015 19.0 2.0 0.0096 16.4 2.0 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|145590693|ref|YP_001152695.1| - 0.0021 18.0 0.0 0.0052 16.7 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase DUF3987 PF13148.6 gi|145590693|ref|YP_001152695.1| - 0.003 16.6 0.1 0.006 15.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3987) AAA_16 PF13191.6 gi|145590693|ref|YP_001152695.1| - 0.0045 17.4 0.2 0.0093 16.4 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|145590693|ref|YP_001152695.1| - 0.006 16.5 0.0 0.021 14.7 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_30 PF13604.6 gi|145590693|ref|YP_001152695.1| - 0.0098 15.6 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.11 gi|145590693|ref|YP_001152695.1| - 0.083 11.8 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain Adeno_IVa2 PF02456.15 gi|145590693|ref|YP_001152695.1| - 0.089 11.6 0.0 0.16 10.7 0.0 1.4 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_33 PF13671.6 gi|145590693|ref|YP_001152695.1| - 0.09 12.9 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145590693|ref|YP_001152695.1| - 0.15 11.6 0.0 0.33 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain PRK PF00485.18 gi|145590693|ref|YP_001152695.1| - 0.16 11.7 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.6 gi|145590693|ref|YP_001152695.1| - 0.16 12.2 0.0 2.6 8.3 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Cytidylate_kin PF02224.18 gi|145590693|ref|YP_001152695.1| - 0.16 11.6 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase Peripla_BP_6 PF13458.6 gi|145590694|ref|YP_001152696.1| - 4.2e-53 181.2 2.8 5.9e-53 180.7 2.8 1.2 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|145590694|ref|YP_001152696.1| - 1.5e-15 57.2 0.0 2e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|145590694|ref|YP_001152696.1| - 1.6e-12 47.1 0.5 5e-09 35.6 0.1 2.3 2 1 0 2 2 2 2 Periplasmic binding protein domain ABC_sub_bind PF04392.12 gi|145590694|ref|YP_001152696.1| - 9.4e-06 25.1 0.3 1.5e-05 24.4 0.3 1.3 1 0 0 1 1 1 1 ABC transporter substrate binding protein Peripla_BP_4 PF13407.6 gi|145590694|ref|YP_001152696.1| - 0.00051 19.7 0.4 0.009 15.6 0.2 2.6 3 1 0 3 3 3 1 Periplasmic binding protein domain BPD_transp_2 PF02653.16 gi|145590695|ref|YP_001152697.1| - 2.5e-33 115.4 50.3 2.9e-33 115.2 50.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|145590696|ref|YP_001152698.1| - 7.7e-29 100.7 51.5 1e-28 100.3 51.5 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|145590697|ref|YP_001152699.1| - 3.6e-28 98.8 0.0 4.8e-28 98.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|145590697|ref|YP_001152699.1| - 2.3e-09 36.9 0.2 5.1e-09 35.9 0.2 1.6 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|145590697|ref|YP_001152699.1| - 5.1e-08 33.1 0.3 0.00022 21.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590697|ref|YP_001152699.1| - 1.9e-06 27.5 0.4 0.0033 16.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|145590697|ref|YP_001152699.1| - 6.2e-05 22.7 0.0 0.00012 21.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145590697|ref|YP_001152699.1| - 9.5e-05 23.0 0.0 0.00019 22.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|145590697|ref|YP_001152699.1| - 0.00017 20.5 0.5 0.13 11.0 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|145590697|ref|YP_001152699.1| - 0.00044 20.0 0.2 0.0015 18.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|145590697|ref|YP_001152699.1| - 0.00046 20.0 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|145590697|ref|YP_001152699.1| - 0.00056 20.3 0.3 0.0013 19.1 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|145590697|ref|YP_001152699.1| - 0.001 19.4 0.3 0.016 15.5 0.3 2.2 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|145590697|ref|YP_001152699.1| - 0.013 14.7 0.1 0.071 12.3 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|145590697|ref|YP_001152699.1| - 0.013 14.6 0.2 0.038 13.1 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein SRP54 PF00448.22 gi|145590697|ref|YP_001152699.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|145590697|ref|YP_001152699.1| - 0.014 15.4 0.0 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|145590697|ref|YP_001152699.1| - 0.019 14.6 0.1 0.14 11.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|145590697|ref|YP_001152699.1| - 0.033 14.1 0.0 0.042 13.7 0.0 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|145590697|ref|YP_001152699.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|145590697|ref|YP_001152699.1| - 0.038 11.5 0.1 0.056 11.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DLIC PF05783.11 gi|145590697|ref|YP_001152699.1| - 0.045 12.6 0.0 0.063 12.1 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_33 PF13671.6 gi|145590697|ref|YP_001152699.1| - 0.052 13.7 0.1 0.38 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|145590697|ref|YP_001152699.1| - 0.053 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|145590697|ref|YP_001152699.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|145590697|ref|YP_001152699.1| - 0.059 13.8 0.2 2.5 8.5 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|145590697|ref|YP_001152699.1| - 0.082 12.3 0.4 3.2 7.1 0.3 2.2 2 0 0 2 2 2 0 Bacterial TniB protein MMR_HSR1 PF01926.23 gi|145590697|ref|YP_001152699.1| - 0.13 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.6 gi|145590697|ref|YP_001152699.1| - 0.14 12.5 0.5 0.39 11.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|145590698|ref|YP_001152700.1| - 1.6e-29 103.1 0.0 2.5e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590698|ref|YP_001152700.1| - 2.9e-10 40.5 0.3 8.9e-07 29.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590698|ref|YP_001152700.1| - 0.00057 19.4 0.5 0.37 10.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_19 PF13245.6 gi|145590698|ref|YP_001152700.1| - 0.00057 20.2 1.1 0.0025 18.2 1.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145590698|ref|YP_001152700.1| - 0.0047 16.7 0.8 0.026 14.2 0.8 1.9 1 1 0 1 1 1 1 AAA domain BCA_ABC_TP_C PF12399.8 gi|145590698|ref|YP_001152700.1| - 0.0073 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter RecA PF00154.21 gi|145590698|ref|YP_001152700.1| - 0.011 15.2 0.0 0.018 14.5 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_23 PF13476.6 gi|145590698|ref|YP_001152700.1| - 0.012 16.1 0.1 0.021 15.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|145590698|ref|YP_001152700.1| - 0.014 15.7 0.4 2.4 8.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|145590698|ref|YP_001152700.1| - 0.03 14.7 0.2 0.31 11.5 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|145590698|ref|YP_001152700.1| - 0.036 14.3 0.2 0.23 11.7 0.2 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|145590698|ref|YP_001152700.1| - 0.041 14.3 0.1 0.077 13.4 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|145590698|ref|YP_001152700.1| - 0.091 12.5 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|145590698|ref|YP_001152700.1| - 0.16 11.6 0.3 0.31 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain PhoU PF01895.19 gi|145590699|ref|YP_001152701.1| - 3.3e-20 72.3 9.9 3.6e-11 43.4 0.7 2.3 2 0 0 2 2 2 2 PhoU domain DUF5330 PF17264.2 gi|145590699|ref|YP_001152701.1| - 0.13 12.3 0.2 6.7 6.8 0.0 2.4 2 0 0 2 2 2 0 Family of unknown function (DUF5330) DUF416 PF04222.12 gi|145590699|ref|YP_001152701.1| - 0.2 11.0 1.2 2.9 7.3 0.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF416) Peptidase_M42 PF05343.14 gi|145590700|ref|YP_001152702.1| - 3.7e-106 354.4 0.0 4.3e-106 354.2 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|145590700|ref|YP_001152702.1| - 2.7e-13 50.1 0.5 4.3e-13 49.4 0.2 1.4 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|145590700|ref|YP_001152702.1| - 3.7e-06 26.8 0.0 0.00051 19.8 0.0 2.5 2 1 0 2 2 2 2 Peptidase family M28 ECH_1 PF00378.20 gi|145590701|ref|YP_001152703.1| - 1.2e-66 224.6 0.0 1.7e-66 224.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|145590701|ref|YP_001152703.1| - 1.1e-64 217.6 0.7 1.8e-64 216.9 0.7 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|145590701|ref|YP_001152703.1| - 1.1e-52 176.6 0.2 7.3e-25 87.4 0.0 3.0 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|145590701|ref|YP_001152703.1| - 8e-34 117.6 0.0 3.2e-33 115.6 0.0 2.0 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase F420_oxidored PF03807.17 gi|145590701|ref|YP_001152703.1| - 5.9e-05 23.6 0.6 0.00023 21.7 0.6 2.1 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|145590701|ref|YP_001152703.1| - 0.00045 20.4 0.0 0.0011 19.2 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|145590701|ref|YP_001152703.1| - 0.00081 18.7 0.2 0.0021 17.3 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|145590701|ref|YP_001152703.1| - 0.0091 15.6 0.0 0.024 14.2 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short_C2 PF13561.6 gi|145590701|ref|YP_001152703.1| - 0.0099 15.4 0.5 0.037 13.6 0.5 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_Gly3P_dh_N PF01210.23 gi|145590701|ref|YP_001152703.1| - 0.021 14.8 0.4 0.065 13.2 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|145590701|ref|YP_001152703.1| - 0.027 14.7 0.2 0.12 12.6 0.1 2.2 2 0 0 2 2 2 0 TrkA-N domain Pyr_redox PF00070.27 gi|145590701|ref|YP_001152703.1| - 0.028 15.0 0.4 0.11 13.0 0.2 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CbiA PF01656.23 gi|145590701|ref|YP_001152703.1| - 0.031 14.3 0.0 0.12 12.5 0.0 1.9 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain CAMP_factor PF07373.11 gi|145590701|ref|YP_001152703.1| - 0.061 12.9 0.3 0.27 10.8 0.1 2.0 2 0 0 2 2 2 0 CAMP factor (Cfa) BLACT_WH PF17778.1 gi|145590701|ref|YP_001152703.1| - 0.067 13.2 0.1 0.22 11.5 0.1 1.8 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain NAD_binding_7 PF13241.6 gi|145590701|ref|YP_001152703.1| - 0.11 13.0 0.2 0.35 11.3 0.2 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding adh_short PF00106.25 gi|145590701|ref|YP_001152703.1| - 0.15 11.5 0.7 0.33 10.4 0.1 2.0 2 0 0 2 2 2 0 short chain dehydrogenase Aldo_ket_red PF00248.21 gi|145590702|ref|YP_001152704.1| - 6e-63 212.8 0.0 6.8e-63 212.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family YrzO PF14142.6 gi|145590702|ref|YP_001152704.1| - 0.1 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 YrzO-like protein AMP-binding PF00501.28 gi|145590703|ref|YP_001152705.1| - 2e-111 372.6 0.0 2.3e-111 372.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|145590703|ref|YP_001152705.1| - 4.3e-21 75.7 0.8 4.3e-21 75.7 0.8 2.3 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|145590704|ref|YP_001152706.1| - 2.7e-42 144.5 4.6 3.2e-42 144.3 3.8 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|145590704|ref|YP_001152706.1| - 5.7e-37 126.8 1.4 1.4e-36 125.6 0.1 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|145590704|ref|YP_001152706.1| - 5.5e-26 90.6 0.0 9.6e-26 89.8 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|145590704|ref|YP_001152706.1| - 6.2e-19 68.6 1.7 1.1e-18 67.8 1.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_ox_N PF14749.6 gi|145590704|ref|YP_001152706.1| - 0.17 12.4 0.0 0.4 11.2 0.0 1.6 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal Thiolase_N PF00108.23 gi|145590705|ref|YP_001152707.1| - 7.5e-25 87.8 0.0 2.4e-24 86.1 0.0 1.8 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|145590705|ref|YP_001152707.1| - 8.2e-10 38.4 0.8 8.4e-09 35.1 0.1 2.8 2 1 1 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|145590705|ref|YP_001152707.1| - 5.5e-06 26.1 6.0 1.7e-05 24.5 1.7 2.7 2 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|145590705|ref|YP_001152707.1| - 9.6e-05 22.2 0.1 0.0018 18.1 0.1 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HSP70 PF00012.20 gi|145590705|ref|YP_001152707.1| - 0.23 9.6 0.1 0.34 9.0 0.1 1.2 1 0 0 1 1 1 0 Hsp70 protein OB_aCoA_assoc PF01796.17 gi|145590706|ref|YP_001152708.1| - 2.1e-13 50.1 0.1 3.2e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|145590706|ref|YP_001152708.1| - 7.4e-12 44.9 1.0 1.5e-11 44.0 1.0 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|145590706|ref|YP_001152708.1| - 0.028 14.4 0.0 0.044 13.8 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|145590706|ref|YP_001152708.1| - 0.073 12.7 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Ribosomal_L37e PF01907.19 gi|145590706|ref|YP_001152708.1| - 0.11 12.6 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L37e Rubredoxin_2 PF18073.1 gi|145590706|ref|YP_001152708.1| - 0.17 11.6 1.3 0.34 10.7 1.3 1.4 1 0 0 1 1 1 0 Rubredoxin metal binding domain CpXC PF14353.6 gi|145590706|ref|YP_001152708.1| - 0.18 11.9 0.9 0.69 10.0 0.0 2.1 1 1 1 2 2 2 0 CpXC protein eIF-5_eIF-2B PF01873.17 gi|145590707|ref|YP_001152709.1| - 6.6e-29 100.2 0.0 7.9e-29 99.9 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 Lar_restr_allev PF14354.6 gi|145590707|ref|YP_001152709.1| - 0.013 15.8 0.8 0.022 15.1 0.8 1.3 1 0 0 1 1 1 0 Restriction alleviation protein Lar Tmemb_55A PF09788.9 gi|145590707|ref|YP_001152709.1| - 0.017 14.2 0.1 0.02 14.0 0.1 1.1 1 0 0 1 1 1 0 Transmembrane protein 55A DUF35_N PF12172.8 gi|145590707|ref|YP_001152709.1| - 0.054 13.4 2.4 0.062 13.2 0.1 2.0 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) EamA PF00892.20 gi|145590708|ref|YP_001152710.1| - 6e-25 88.0 36.9 5.4e-15 55.8 16.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family Helicase_RecD PF05127.14 gi|145590709|ref|YP_001152711.1| - 2.3e-54 183.9 0.0 4.3e-54 183.0 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|145590709|ref|YP_001152711.1| - 7e-44 149.9 0.0 1.1e-29 103.4 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|145590709|ref|YP_001152711.1| - 1.9e-30 104.6 0.0 5.9e-30 103.1 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|145590709|ref|YP_001152711.1| - 2.2e-05 24.7 0.0 5.3e-05 23.4 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family tRNA_bind_2 PF13725.6 gi|145590709|ref|YP_001152711.1| - 0.0015 18.3 0.0 0.0028 17.4 0.0 1.3 1 0 0 1 1 1 1 Possible tRNA binding domain Acetyltransf_7 PF13508.7 gi|145590709|ref|YP_001152711.1| - 0.0061 17.0 0.2 0.023 15.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|145590709|ref|YP_001152711.1| - 0.014 15.3 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain VitK2_biosynth PF02621.14 gi|145590710|ref|YP_001152712.1| - 6.7e-79 265.2 0.2 7.5e-79 265.0 0.2 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis DUF3197 PF11432.8 gi|145590710|ref|YP_001152712.1| - 0.062 13.2 0.1 2.7 7.9 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3197) Hydant_A_N PF05378.13 gi|145590710|ref|YP_001152712.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region HEPN PF05168.14 gi|145590711|ref|YP_001152713.1| - 1.2e-24 86.7 0.2 1.7e-24 86.2 0.2 1.1 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|145590712|ref|YP_001152714.1| - 3.4e-07 30.5 0.0 4.3e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145590712|ref|YP_001152714.1| - 4.7e-05 23.4 0.0 5.6e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|145590712|ref|YP_001152714.1| - 0.094 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm EamA PF00892.20 gi|145590713|ref|YP_001152715.1| - 1.9e-19 70.2 31.2 3.3e-16 59.7 8.0 2.5 2 1 0 2 2 2 2 EamA-like transporter family TrmB PF01978.19 gi|145590714|ref|YP_001152716.1| - 8.6e-07 28.7 0.5 1.5e-06 28.0 0.5 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|145590714|ref|YP_001152716.1| - 0.00024 21.0 0.0 0.00039 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.12 gi|145590714|ref|YP_001152716.1| - 0.00037 19.0 0.2 0.00046 18.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Dimerisation2 PF16864.5 gi|145590714|ref|YP_001152716.1| - 0.00074 19.4 0.5 0.0067 16.4 0.0 2.0 1 1 1 2 2 2 1 Dimerisation domain HTH_27 PF13463.6 gi|145590714|ref|YP_001152716.1| - 0.0032 17.9 0.2 0.0074 16.8 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|145590714|ref|YP_001152716.1| - 0.0044 16.9 0.1 0.0092 15.9 0.1 1.5 1 0 0 1 1 1 1 MarR family Replic_Relax PF13814.6 gi|145590714|ref|YP_001152716.1| - 0.0062 16.6 0.1 0.0083 16.2 0.1 1.1 1 0 0 1 1 1 1 Replication-relaxation DUF4423 PF14394.6 gi|145590714|ref|YP_001152716.1| - 0.0072 16.0 0.1 0.014 15.1 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) Rio2_N PF09202.11 gi|145590714|ref|YP_001152716.1| - 0.02 15.1 0.1 0.25 11.6 0.0 2.3 1 1 1 2 2 2 0 Rio2, N-terminal RsbRD_N PF14361.6 gi|145590714|ref|YP_001152716.1| - 0.042 14.5 0.3 0.082 13.6 0.1 1.6 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain HTH_IclR PF09339.10 gi|145590714|ref|YP_001152716.1| - 0.045 13.6 0.6 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain PadR PF03551.14 gi|145590714|ref|YP_001152716.1| - 0.06 13.3 0.1 0.093 12.7 0.1 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Sulfolobus_pRN PF05584.11 gi|145590714|ref|YP_001152716.1| - 0.089 12.9 0.1 0.16 12.1 0.0 1.4 1 1 0 1 1 1 0 Sulfolobus plasmid regulatory protein DUF2250 PF10007.9 gi|145590714|ref|YP_001152716.1| - 0.09 12.9 0.2 0.34 11.0 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Phage_rep_org_N PF09681.10 gi|145590714|ref|YP_001152716.1| - 0.094 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Caudo_TAP PF02413.17 gi|145590714|ref|YP_001152716.1| - 0.1 12.7 0.1 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK CtsR_C PF17727.1 gi|145590714|ref|YP_001152716.1| - 0.12 12.5 0.1 0.32 11.1 0.0 1.7 2 0 0 2 2 1 0 CtsR C-terminal dimerization domain DUF4364 PF14277.6 gi|145590714|ref|YP_001152716.1| - 0.19 11.4 0.0 0.27 11.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Cyt_bd_oxida_I PF01654.17 gi|145590716|ref|YP_001152718.1| - 6.9e-11 41.4 20.2 6.9e-11 41.4 20.2 2.1 1 1 0 2 2 2 2 Cytochrome bd terminal oxidase subunit I DUF2678 PF10856.8 gi|145590716|ref|YP_001152718.1| - 0.0079 16.1 0.6 0.0079 16.1 0.6 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2678) Sid-5 PF17204.3 gi|145590716|ref|YP_001152718.1| - 0.029 14.5 0.1 0.059 13.5 0.1 1.5 1 0 0 1 1 1 0 Sid-5 family Cyt_bd_oxida_I PF01654.17 gi|145590717|ref|YP_001152719.1| - 8.2e-68 228.9 21.9 3.3e-67 226.9 21.9 1.8 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I 4HBT PF03061.22 gi|145590718|ref|YP_001152720.1| - 1.6e-16 60.4 0.1 2.3e-16 59.9 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|145590718|ref|YP_001152720.1| - 0.012 15.8 0.0 0.017 15.4 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily tRNA_anti-codon PF01336.25 gi|145590718|ref|YP_001152720.1| - 0.13 12.3 0.2 0.4 10.7 0.1 1.8 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain ABC2_membrane_2 PF12679.7 gi|145590719|ref|YP_001152721.1| - 8.3 5.6 10.1 0.96 8.7 5.2 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF4147 PF13660.6 gi|145590720|ref|YP_001152722.1| - 1.2e-72 244.2 0.1 1.6e-72 243.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|145590720|ref|YP_001152722.1| - 7.7e-36 122.6 1.6 1.6e-35 121.6 1.6 1.6 1 0 0 1 1 1 1 MOFRL family ILEI PF15711.5 gi|145590720|ref|YP_001152722.1| - 0.17 12.4 0.0 2.4 8.7 0.0 2.7 3 0 0 3 3 3 0 Interleukin-like EMT inducer Polbeta PF18765.1 gi|145590722|ref|YP_001152724.1| - 5.7e-11 42.3 0.0 8.4e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Fer4_14 PF13394.6 gi|145590722|ref|YP_001152724.1| - 0.028 14.5 0.0 0.033 14.3 0.0 1.1 1 0 0 1 1 1 0 4Fe-4S single cluster domain DUF86 PF01934.17 gi|145590723|ref|YP_001152725.1| - 3.6e-13 49.4 0.2 4.6e-13 49.1 0.2 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF86 tRNA_anti_2 PF13742.6 gi|145590724|ref|YP_001152726.1| - 0.055 13.7 0.0 0.85 9.9 0.0 2.4 2 1 0 2 2 2 0 OB-fold nucleic acid binding domain PaRep2b PF07775.11 gi|145590725|ref|YP_001152727.1| - 3.5e-19 68.7 0.3 4e-19 68.5 0.3 1.0 1 0 0 1 1 1 1 PaRep2b protein COXG PF06240.13 gi|145590726|ref|YP_001152728.1| - 2.7e-32 111.4 0.0 3e-32 111.3 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc2 PF10604.9 gi|145590726|ref|YP_001152728.1| - 6.3e-10 39.5 0.1 7.4e-10 39.3 0.1 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.9 gi|145590726|ref|YP_001152728.1| - 0.064 13.4 0.1 0.15 12.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2505) HTH_41 PF14502.6 gi|145590726|ref|YP_001152728.1| - 0.12 12.1 0.1 0.27 11.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain VKOR PF07884.14 gi|145590727|ref|YP_001152729.1| - 5.6e-14 52.4 9.6 8.9e-14 51.7 9.1 1.5 1 1 0 1 1 1 1 Vitamin K epoxide reductase family PSII PF00421.19 gi|145590727|ref|YP_001152729.1| - 0.056 12.1 1.4 0.068 11.8 1.4 1.1 1 0 0 1 1 1 0 Photosystem II protein Tricorn_C1 PF14684.6 gi|145590728|ref|YP_001152730.1| - 2.5e-30 104.4 0.9 4.6e-30 103.5 0.9 1.5 1 0 0 1 1 1 1 Tricorn protease C1 domain Tricorn_PDZ PF14685.6 gi|145590728|ref|YP_001152730.1| - 7.9e-24 83.4 0.0 2.4e-23 81.9 0.0 1.8 2 0 0 2 2 2 1 Tricorn protease PDZ domain Peptidase_S41 PF03572.18 gi|145590728|ref|YP_001152730.1| - 4.3e-22 78.4 0.0 4.4e-21 75.2 0.0 2.2 1 1 0 1 1 1 1 Peptidase family S41 PD40 PF07676.12 gi|145590728|ref|YP_001152730.1| - 7.4e-18 64.0 6.3 0.00027 20.8 0.1 7.2 7 0 0 7 7 7 4 WD40-like Beta Propeller Repeat ANAPC4_WD40 PF12894.7 gi|145590728|ref|YP_001152730.1| - 3.7e-09 36.8 0.0 0.0063 16.8 0.0 4.4 4 0 0 4 4 4 2 Anaphase-promoting complex subunit 4 WD40 domain DPPIV_N PF00930.21 gi|145590728|ref|YP_001152730.1| - 0.0002 20.3 0.0 7.5 5.2 0.0 5.0 4 1 2 6 6 6 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region PQQ_3 PF13570.6 gi|145590728|ref|YP_001152730.1| - 0.0023 18.4 11.1 0.029 14.9 0.0 5.2 5 0 0 5 5 5 1 PQQ-like domain PQQ_2 PF13360.6 gi|145590728|ref|YP_001152730.1| - 0.014 14.9 0.1 1.1 8.8 0.1 2.9 2 1 1 3 3 3 0 PQQ-like domain WD40 PF00400.32 gi|145590728|ref|YP_001152730.1| - 0.13 13.2 0.0 44 5.2 0.0 4.1 4 0 0 4 4 3 0 WD domain, G-beta repeat Cytochrom_D1 PF02239.16 gi|145590728|ref|YP_001152730.1| - 0.15 10.6 0.0 2.3 6.6 0.0 2.4 2 0 0 2 2 2 0 Cytochrome D1 heme domain TruB_C PF09142.11 gi|145590728|ref|YP_001152730.1| - 0.32 10.8 5.7 12 5.8 0.6 5.0 6 0 0 6 6 6 0 tRNA Pseudouridine synthase II, C terminal Proteasome_A_N PF10584.9 gi|145590728|ref|YP_001152730.1| - 1.1 9.0 3.6 26 4.6 0.0 4.0 4 0 0 4 4 4 0 Proteasome subunit A N-terminal signature AhpC-TSA PF00578.21 gi|145590729|ref|YP_001152731.1| - 3.3e-29 101.3 0.0 4.3e-29 101.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family 1-cysPrx_C PF10417.9 gi|145590729|ref|YP_001152731.1| - 1.8e-16 59.7 0.6 4.4e-16 58.4 0.6 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin Redoxin PF08534.10 gi|145590729|ref|YP_001152731.1| - 9.2e-14 51.4 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Redoxin FeoB_N PF02421.18 gi|145590731|ref|YP_001152733.1| - 1.1e-26 93.2 0.0 1.5e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.14 gi|145590731|ref|YP_001152733.1| - 3.7e-19 69.0 21.5 2.6e-16 59.9 5.6 3.2 3 0 0 3 3 3 2 Nucleoside recognition MMR_HSR1 PF01926.23 gi|145590731|ref|YP_001152733.1| - 1.2e-18 67.3 0.0 1.8e-18 66.6 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|145590731|ref|YP_001152733.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|145590731|ref|YP_001152733.1| - 0.074 12.9 0.0 6.7 6.6 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AIG1 PF04548.16 gi|145590731|ref|YP_001152733.1| - 0.3 10.4 0.0 0.42 9.9 0.0 1.2 1 0 0 1 1 1 0 AIG1 family LUD_dom PF02589.15 gi|145590732|ref|YP_001152734.1| - 3.9e-46 157.2 0.3 5.7e-46 156.6 0.3 1.2 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|145590732|ref|YP_001152734.1| - 2.2e-10 40.8 1.1 4.2e-10 39.9 1.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590732|ref|YP_001152734.1| - 2.9e-08 34.1 0.8 5.7e-08 33.2 0.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590732|ref|YP_001152734.1| - 2.2e-07 31.4 3.6 4e-07 30.5 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145590732|ref|YP_001152734.1| - 5.3e-06 26.5 6.7 9.8e-05 22.4 8.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145590732|ref|YP_001152734.1| - 1.8e-05 24.6 7.0 0.0032 17.5 0.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|145590732|ref|YP_001152734.1| - 5.6e-05 22.8 7.9 0.0023 17.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.6 gi|145590732|ref|YP_001152734.1| - 8.7e-05 22.3 1.3 0.0045 16.7 0.0 2.6 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.6 gi|145590732|ref|YP_001152734.1| - 0.00032 20.8 4.9 0.011 15.9 6.2 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145590732|ref|YP_001152734.1| - 0.0023 18.0 3.6 0.12 12.5 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590732|ref|YP_001152734.1| - 0.0072 16.7 5.9 0.037 14.5 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|145590732|ref|YP_001152734.1| - 0.011 15.8 8.5 0.14 12.3 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145590732|ref|YP_001152734.1| - 0.016 15.4 2.6 0.09 13.0 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590732|ref|YP_001152734.1| - 0.066 14.2 7.2 0.41 11.6 7.2 2.2 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|145590732|ref|YP_001152734.1| - 0.11 13.3 5.3 1.6 9.7 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Na_Ca_ex PF01699.24 gi|145590733|ref|YP_001152735.1| - 1.5e-12 47.7 27.1 1.6e-06 28.1 8.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Malate_synthase PF01274.22 gi|145590734|ref|YP_001152736.1| - 7.1e-41 140.1 0.0 6.9e-36 123.6 0.0 2.1 2 0 0 2 2 2 2 Malate synthase HpcH_HpaI PF03328.14 gi|145590734|ref|YP_001152736.1| - 0.049 12.8 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 HpcH/HpaI aldolase/citrate lyase family FAD-oxidase_C PF02913.19 gi|145590735|ref|YP_001152737.1| - 2.1e-67 227.4 0.5 2.8e-67 227.0 0.5 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|145590735|ref|YP_001152737.1| - 4.8e-35 120.3 1.6 2.3e-34 118.1 1.6 2.1 1 1 0 1 1 1 1 FAD binding domain AP_endonuc_2 PF01261.24 gi|145590735|ref|YP_001152737.1| - 0.13 11.6 0.0 2.3 7.6 0.0 2.4 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FAD_binding_4 PF01565.23 gi|145590736|ref|YP_001152738.1| - 1.7e-22 79.6 0.0 2.7e-22 79.0 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|145590736|ref|YP_001152738.1| - 0.00029 20.6 0.0 0.00058 19.6 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain LHC PF00556.20 gi|145590736|ref|YP_001152738.1| - 0.19 11.9 1.0 0.76 10.0 0.0 2.2 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit CCG PF02754.16 gi|145590737|ref|YP_001152739.1| - 6.8e-18 64.7 0.0 1.5e-08 34.7 0.0 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|145590737|ref|YP_001152739.1| - 8e-12 45.4 2.5 2e-11 44.2 2.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590737|ref|YP_001152739.1| - 3.3e-10 40.3 3.3 7.7e-10 39.2 3.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590737|ref|YP_001152739.1| - 1.3e-09 38.4 3.4 2.7e-09 37.5 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145590737|ref|YP_001152739.1| - 3.2e-06 26.7 13.2 0.0012 18.6 1.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145590737|ref|YP_001152739.1| - 5.1e-06 26.5 6.7 0.00012 22.1 8.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590737|ref|YP_001152739.1| - 1.7e-05 24.6 12.6 0.0022 18.0 1.9 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|145590737|ref|YP_001152739.1| - 0.00012 22.3 9.9 0.0039 17.6 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145590737|ref|YP_001152739.1| - 0.0002 21.3 12.6 0.018 15.1 1.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145590737|ref|YP_001152739.1| - 0.00046 20.3 9.5 0.017 15.3 10.5 2.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590737|ref|YP_001152739.1| - 0.018 16.0 10.0 0.48 11.4 11.0 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|145590737|ref|YP_001152739.1| - 0.032 14.4 1.2 4.7 7.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145590737|ref|YP_001152739.1| - 0.13 12.4 11.2 4.2 7.6 11.2 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145590737|ref|YP_001152739.1| - 0.38 11.3 4.2 4.1 8.0 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|145590737|ref|YP_001152739.1| - 1.5 9.9 16.6 5.1 8.3 4.0 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|145590737|ref|YP_001152739.1| - 5.1 8.0 12.9 12 6.8 2.0 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145590738|ref|YP_001152740.1| - 6.7e-13 48.9 3.7 8.2e-13 48.6 3.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590738|ref|YP_001152740.1| - 3.7e-09 37.0 5.2 4.5e-09 36.7 5.2 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590738|ref|YP_001152740.1| - 6e-09 36.4 5.9 8.3e-09 35.9 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145590738|ref|YP_001152740.1| - 4.8e-06 26.1 13.8 0.00026 20.7 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145590738|ref|YP_001152740.1| - 6.1e-06 26.2 9.7 0.00011 22.3 10.7 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145590738|ref|YP_001152740.1| - 2.1e-05 24.6 8.5 0.00027 21.1 9.3 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|145590738|ref|YP_001152740.1| - 4.9e-05 23.1 4.1 0.01 15.6 0.3 2.1 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|145590738|ref|YP_001152740.1| - 0.00033 21.5 7.5 0.00087 20.2 7.5 1.7 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|145590738|ref|YP_001152740.1| - 0.00046 20.3 3.5 0.21 11.8 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590738|ref|YP_001152740.1| - 0.0017 18.3 11.8 0.15 12.2 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145590738|ref|YP_001152740.1| - 0.006 16.8 4.7 0.096 12.9 0.6 2.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145590738|ref|YP_001152740.1| - 0.0078 16.3 0.7 0.0078 16.3 0.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_22 PF17179.4 gi|145590738|ref|YP_001152740.1| - 0.015 16.1 9.5 0.23 12.3 0.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590738|ref|YP_001152740.1| - 0.19 12.3 12.3 2 9.1 2.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145590738|ref|YP_001152740.1| - 1.2 10.3 15.7 3.4 8.8 2.9 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|145590739|ref|YP_001152741.1| - 2.5e-08 34.0 0.0 0.0003 20.9 0.0 2.5 2 1 0 2 2 2 2 Cysteine-rich domain EB_dh PF09459.10 gi|145590742|ref|YP_001152744.1| - 3.8e-37 128.6 0.0 1.1e-36 127.1 0.0 1.7 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase R2K_3 PF14243.6 gi|145590742|ref|YP_001152744.1| - 0.092 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 Fer4_11 PF13247.6 gi|145590743|ref|YP_001152745.1| - 4.1e-36 123.1 7.8 4.1e-36 123.1 7.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Nitr_red_bet_C PF14711.6 gi|145590743|ref|YP_001152745.1| - 3.9e-25 87.3 0.1 6.8e-25 86.6 0.1 1.4 1 0 0 1 1 1 1 Respiratory nitrate reductase beta C-terminal Fer4_10 PF13237.6 gi|145590743|ref|YP_001152745.1| - 3.2e-07 30.4 16.8 1.4e-05 25.1 4.7 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145590743|ref|YP_001152745.1| - 9.9e-07 29.3 19.4 0.00024 21.6 6.1 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590743|ref|YP_001152745.1| - 4.1e-06 26.6 18.0 0.018 15.1 2.3 3.8 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145590743|ref|YP_001152745.1| - 6.9e-05 22.7 18.5 0.087 12.9 0.4 3.6 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145590743|ref|YP_001152745.1| - 0.0015 18.7 20.9 0.2 11.8 0.7 3.2 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145590743|ref|YP_001152745.1| - 0.0015 18.3 19.7 0.031 14.1 2.4 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145590743|ref|YP_001152745.1| - 0.0015 19.0 7.4 0.082 13.5 0.2 3.3 3 0 0 3 3 3 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|145590743|ref|YP_001152745.1| - 0.0038 17.3 17.8 0.11 12.6 4.9 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|145590743|ref|YP_001152745.1| - 0.013 16.3 9.9 0.84 10.4 0.2 3.8 4 0 0 4 4 4 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|145590743|ref|YP_001152745.1| - 0.013 16.1 16.0 0.62 10.6 0.4 3.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Pox_RNA_pol_35 PF03396.15 gi|145590743|ref|YP_001152745.1| - 0.18 11.0 0.0 0.3 10.3 0.0 1.3 1 0 0 1 1 1 0 Poxvirus DNA-directed RNA polymerase, 35 kD subunit Fer4_8 PF13183.6 gi|145590743|ref|YP_001152745.1| - 0.22 12.0 0.1 0.22 12.0 0.1 3.4 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590743|ref|YP_001152745.1| - 3.8 8.3 24.0 2.4 8.9 1.6 3.7 4 0 0 4 4 3 0 4Fe-4S binding domain Molybdopterin PF00384.22 gi|145590744|ref|YP_001152746.1| - 2.6e-129 431.9 0.0 7.9e-68 229.4 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|145590744|ref|YP_001152746.1| - 6.9e-21 74.4 0.1 2.1e-20 72.8 0.1 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|145590744|ref|YP_001152746.1| - 0.0029 17.5 0.0 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain Nitr_red_alph_N PF14710.6 gi|145590744|ref|YP_001152746.1| - 0.0036 17.7 2.7 0.011 16.2 2.7 1.9 1 0 0 1 1 1 1 Respiratory nitrate reductase alpha N-terminal TAT_signal PF10518.9 gi|145590744|ref|YP_001152746.1| - 0.18 11.7 1.6 0.59 10.1 1.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3094 PF11293.8 gi|145590745|ref|YP_001152747.1| - 7.2 6.4 6.1 1.5 8.6 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3094) COX1 PF00115.20 gi|145590747|ref|YP_001152749.1| - 3.5e-31 108.5 57.0 3.5e-31 108.5 57.0 2.7 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I DUF2339 PF10101.9 gi|145590747|ref|YP_001152749.1| - 3.1e-05 22.8 20.3 3.1e-05 22.8 20.3 2.4 1 1 1 2 2 2 1 Predicted membrane protein (DUF2339) Serinc PF03348.15 gi|145590747|ref|YP_001152749.1| - 3.2 6.6 8.6 3.3 6.6 0.3 2.5 2 0 0 2 2 2 0 Serine incorporator (Serinc) ATPase_2 PF01637.18 gi|145590748|ref|YP_001152750.1| - 2.8e-18 66.7 0.0 8.6e-18 65.1 0.0 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|145590748|ref|YP_001152750.1| - 7.4e-09 35.7 0.0 0.0028 17.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|145590748|ref|YP_001152750.1| - 2.9e-08 34.3 1.3 1.3e-07 32.1 0.2 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|145590748|ref|YP_001152750.1| - 1.9e-06 28.2 0.0 1e-05 25.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain HTH_20 PF12840.7 gi|145590748|ref|YP_001152750.1| - 0.38 10.9 3.3 0.68 10.0 0.1 2.9 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|145590749|ref|YP_001152751.1| - 3.4e-11 43.5 0.4 9.4e-10 38.9 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|145590749|ref|YP_001152751.1| - 4e-11 42.6 0.2 2e-09 37.2 0.1 2.8 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|145590749|ref|YP_001152751.1| - 3.9e-10 39.5 2.4 6.8e-09 35.5 0.4 2.8 2 1 1 3 3 3 1 MarR family Fe_dep_repress PF01325.19 gi|145590749|ref|YP_001152751.1| - 9.2e-09 35.4 0.1 2.7e-08 33.9 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|145590749|ref|YP_001152751.1| - 3.4e-08 33.2 0.2 1.5e-07 31.2 0.0 2.2 3 0 0 3 3 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|145590749|ref|YP_001152751.1| - 3.4e-07 29.9 0.6 5e-06 26.2 0.7 2.9 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|145590749|ref|YP_001152751.1| - 1.8e-06 27.4 0.4 1.2e-05 24.8 0.1 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|145590749|ref|YP_001152751.1| - 9.2e-06 25.5 0.1 4e-05 23.4 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|145590749|ref|YP_001152751.1| - 1e-05 25.5 1.3 8.5e-05 22.5 0.1 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|145590749|ref|YP_001152751.1| - 9e-05 22.8 0.3 0.0012 19.2 0.2 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_36 PF13730.6 gi|145590749|ref|YP_001152751.1| - 0.00012 22.0 0.4 0.00048 20.0 0.0 2.2 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|145590749|ref|YP_001152751.1| - 0.00014 22.0 0.1 0.00022 21.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|145590749|ref|YP_001152751.1| - 0.00041 20.2 0.1 0.00095 19.1 0.1 1.6 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|145590749|ref|YP_001152751.1| - 0.00051 20.0 0.1 0.0086 16.0 0.1 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|145590749|ref|YP_001152751.1| - 0.0021 17.7 0.7 0.0052 16.4 0.3 1.9 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family FeoC PF09012.10 gi|145590749|ref|YP_001152751.1| - 0.0022 18.0 0.0 0.0068 16.5 0.0 1.7 2 0 0 2 2 1 1 FeoC like transcriptional regulator FtsK_gamma PF09397.10 gi|145590749|ref|YP_001152751.1| - 0.0024 17.6 0.3 0.017 14.9 0.3 2.1 2 0 0 2 2 2 1 Ftsk gamma domain LexA_DNA_bind PF01726.16 gi|145590749|ref|YP_001152751.1| - 0.0029 17.4 0.1 0.0057 16.4 0.1 1.6 1 1 0 1 1 1 1 LexA DNA binding domain HTH_28 PF13518.6 gi|145590749|ref|YP_001152751.1| - 0.0044 17.1 2.7 0.18 11.9 0.1 3.6 3 1 1 4 4 4 1 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|145590749|ref|YP_001152751.1| - 0.011 15.1 0.1 0.04 13.3 0.1 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|145590749|ref|YP_001152751.1| - 0.011 15.5 0.6 0.058 13.2 0.1 2.5 3 0 0 3 3 3 0 Homeodomain-like domain HTH_DeoR PF08220.12 gi|145590749|ref|YP_001152751.1| - 0.021 14.6 0.0 0.041 13.6 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.6 gi|145590749|ref|YP_001152751.1| - 0.023 14.7 0.0 0.35 10.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DUF4423 PF14394.6 gi|145590749|ref|YP_001152751.1| - 0.035 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_9 PF08221.11 gi|145590749|ref|YP_001152751.1| - 0.12 12.4 0.0 0.71 10.0 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain CENP-B_N PF04218.13 gi|145590749|ref|YP_001152751.1| - 0.14 11.8 0.0 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain PadR PF03551.14 gi|145590749|ref|YP_001152751.1| - 0.14 12.1 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_38 PF13936.6 gi|145590749|ref|YP_001152751.1| - 0.15 11.9 0.6 0.37 10.6 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|145590749|ref|YP_001152751.1| - 5.4 7.0 7.8 0.77 9.8 2.0 2.6 2 1 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Hemerythrin PF01814.23 gi|145590750|ref|YP_001152752.1| - 2.5e-18 66.9 0.0 4.3e-18 66.2 0.0 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain DUF2981 PF11200.8 gi|145590751|ref|YP_001152753.1| - 0.19 11.5 4.0 0.22 11.3 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2981) MazE_antitoxin PF04014.18 gi|145590752|ref|YP_001152754.1| - 6.8e-05 22.7 0.2 0.00025 20.9 0.0 1.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin SpoOE-like PF09388.10 gi|145590752|ref|YP_001152754.1| - 0.02 14.8 4.9 0.74 9.8 0.4 3.7 3 0 0 3 3 3 0 Spo0E like sporulation regulatory protein HAD_2 PF13419.6 gi|145590753|ref|YP_001152755.1| - 1.1e-18 67.9 0.0 1.4e-18 67.6 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|145590753|ref|YP_001152755.1| - 2.5e-09 37.1 0.0 4.8e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|145590753|ref|YP_001152755.1| - 1.4e-07 32.0 0.1 9.9e-07 29.3 0.1 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145590753|ref|YP_001152755.1| - 0.015 15.8 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase UDG PF03167.19 gi|145590753|ref|YP_001152755.1| - 0.12 12.4 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily NIF PF03031.18 gi|145590753|ref|YP_001152755.1| - 0.12 12.2 0.0 0.64 9.8 0.0 2.1 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase Aldedh PF00171.22 gi|145590754|ref|YP_001152756.1| - 9.4e-137 456.3 0.0 1.1e-136 456.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family RNA_pol_inhib PF16857.5 gi|145590754|ref|YP_001152756.1| - 0.17 11.7 1.4 1.5 8.7 0.1 2.5 2 0 0 2 2 2 0 RNA polymerase inhibitor PPDK_N PF01326.19 gi|145590755|ref|YP_001152757.1| - 4.1e-88 295.8 0.0 5e-88 295.5 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|145590756|ref|YP_001152758.1| - 1.1e-23 82.7 0.2 1.8e-23 82.1 0.2 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PEP-utilisers_N PF05524.13 gi|145590756|ref|YP_001152758.1| - 0.19 11.9 1.3 18 5.5 0.0 2.4 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal Hydrolase_like PF13242.6 gi|145590757|ref|YP_001152759.1| - 5.8e-18 64.7 0.0 1.5e-17 63.4 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|145590757|ref|YP_001152759.1| - 1.9e-15 56.8 0.0 7.6e-15 54.9 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|145590757|ref|YP_001152759.1| - 0.0019 18.3 0.0 0.0069 16.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145590757|ref|YP_001152759.1| - 0.0059 16.9 0.2 0.02 15.2 0.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase MAF_flag10 PF01973.18 gi|145590757|ref|YP_001152759.1| - 0.0091 15.7 0.1 4.6 6.9 0.0 3.8 3 1 0 4 4 4 1 Protein of unknown function DUF115 Peptidase_Mx1 PF15890.5 gi|145590757|ref|YP_001152759.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative zinc-binding metallo-peptidase Hydrolase_6 PF13344.6 gi|145590758|ref|YP_001152760.1| - 1.5e-14 53.9 0.0 4.5e-14 52.4 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|145590758|ref|YP_001152760.1| - 5.9e-13 48.7 0.2 4.9e-12 45.7 0.1 2.2 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|145590758|ref|YP_001152760.1| - 7.3e-09 35.9 0.0 4.9e-07 30.0 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145590758|ref|YP_001152760.1| - 3.9e-07 30.6 0.1 2.3e-06 28.1 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Inositol_P PF00459.25 gi|145590759|ref|YP_001152761.1| - 7.4e-22 78.1 0.0 1.4e-21 77.2 0.0 1.4 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|145590759|ref|YP_001152761.1| - 0.0037 16.8 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PEP-utilizers PF00391.23 gi|145590760|ref|YP_001152762.1| - 1.8e-22 78.8 1.6 4.1e-22 77.7 1.6 1.6 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Rieske PF00355.26 gi|145590761|ref|YP_001152763.1| - 6.5e-09 35.6 0.0 8.7e-09 35.2 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590761|ref|YP_001152763.1| - 4.7e-06 26.5 0.0 5.6e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain DUF5516 PF17637.2 gi|145590761|ref|YP_001152763.1| - 0.15 11.8 0.5 0.15 11.8 0.5 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5516) LPD11 PF18824.1 gi|145590762|ref|YP_001152764.1| - 0.077 13.1 0.7 3 8.0 0.0 2.8 3 0 0 3 3 3 0 Large polyvalent protein-associated domain 11 NUDIX PF00293.28 gi|145590763|ref|YP_001152765.1| - 4.4e-18 65.6 0.1 5.6e-18 65.2 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain LigA PF07746.11 gi|145590765|ref|YP_001152767.1| - 2.5e-07 30.7 0.0 3e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Aromatic-ring-opening dioxygenase LigAB, LigA subunit HTH_19 PF12844.7 gi|145590765|ref|YP_001152767.1| - 0.13 12.3 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LigB PF02900.18 gi|145590766|ref|YP_001152768.1| - 5.9e-40 137.1 0.0 7.4e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Rieske PF00355.26 gi|145590767|ref|YP_001152769.1| - 5.9e-07 29.3 0.0 7.1e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590767|ref|YP_001152769.1| - 3.1e-05 23.8 0.0 3.4e-05 23.7 0.0 1.0 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain PQQ_3 PF13570.6 gi|145590767|ref|YP_001152769.1| - 0.0024 18.3 0.3 5.8 7.5 0.0 3.2 3 0 0 3 3 3 2 PQQ-like domain Ribosomal_L36 PF00444.18 gi|145590767|ref|YP_001152769.1| - 0.14 12.3 0.0 0.31 11.3 0.0 1.6 2 0 0 2 2 2 0 Ribosomal protein L36 Herpes_teg_N PF04843.12 gi|145590767|ref|YP_001152769.1| - 0.18 11.5 0.0 0.3 10.8 0.0 1.5 1 1 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region SPC25 PF06703.11 gi|145590768|ref|YP_001152770.1| - 0.51 10.1 2.7 0.8 9.5 2.7 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) SBP56 PF05694.11 gi|145590769|ref|YP_001152771.1| - 1.3e-198 660.5 0.0 1.4e-198 660.3 0.0 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|145590769|ref|YP_001152771.1| - 0.19 10.9 0.0 2.1 7.5 0.0 2.2 1 1 1 2 2 2 0 Lactonase, 7-bladed beta-propeller Rieske PF00355.26 gi|145590770|ref|YP_001152772.1| - 4.9e-14 52.0 0.0 5.5e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590770|ref|YP_001152772.1| - 6.1e-05 22.9 0.0 8.3e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.26 gi|145590771|ref|YP_001152773.1| - 2.5e-11 43.4 0.0 4e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590771|ref|YP_001152773.1| - 1.3e-05 25.1 0.0 2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain AAA_lid_7 PF17867.1 gi|145590772|ref|YP_001152774.1| - 0.12 12.6 0.0 3.1 8.0 0.0 2.7 2 1 0 2 2 2 0 Midasin AAA lid domain Hemerythrin PF01814.23 gi|145590773|ref|YP_001152775.1| - 7.2e-05 23.4 2.9 0.00012 22.7 2.9 1.4 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain CENP-K PF11802.8 gi|145590773|ref|YP_001152775.1| - 0.015 14.9 0.5 0.022 14.4 0.5 1.2 1 0 0 1 1 1 0 Centromere-associated protein K UBA_3 PF09288.10 gi|145590773|ref|YP_001152775.1| - 0.016 15.0 0.3 0.045 13.6 0.3 1.7 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain Rieske PF00355.26 gi|145590775|ref|YP_001152777.1| - 8.7e-05 22.4 0.0 9.8e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain MazE_antitoxin PF04014.18 gi|145590777|ref|YP_001152779.1| - 0.00041 20.2 0.2 0.0018 18.2 0.2 2.0 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin L_lactis_ph-MCP PF06673.11 gi|145590777|ref|YP_001152779.1| - 0.052 12.5 0.2 0.085 11.8 0.2 1.3 1 0 0 1 1 1 0 Lactococcus lactis bacteriophage major capsid protein PhoU PF01895.19 gi|145590777|ref|YP_001152779.1| - 0.082 13.4 7.7 1.2 9.6 0.5 3.1 2 1 2 4 4 4 0 PhoU domain PHM7_cyt PF14703.6 gi|145590777|ref|YP_001152779.1| - 0.15 12.2 1.0 0.79 9.9 0.9 1.8 1 1 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter Haem_degrading PF03928.14 gi|145590778|ref|YP_001152780.1| - 9.3e-21 74.1 0.2 1.1e-20 73.8 0.2 1.1 1 0 0 1 1 1 1 Haem-degrading DUF460 PF04312.13 gi|145590778|ref|YP_001152780.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) ADH_N PF08240.12 gi|145590779|ref|YP_001152781.1| - 1.1e-26 92.9 0.5 2.1e-26 91.9 0.5 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|145590779|ref|YP_001152781.1| - 2.9e-19 69.3 1.3 5.2e-19 68.5 0.4 1.8 1 1 1 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|145590779|ref|YP_001152781.1| - 3.2e-15 57.3 0.1 5.9e-15 56.5 0.1 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|145590779|ref|YP_001152781.1| - 0.00019 21.3 0.0 0.00048 20.0 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase NmrA PF05368.13 gi|145590779|ref|YP_001152781.1| - 0.0017 17.9 0.4 0.0017 17.9 0.4 1.5 2 0 0 2 2 2 1 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|145590779|ref|YP_001152781.1| - 0.0096 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|145590779|ref|YP_001152781.1| - 0.016 14.5 0.8 0.026 13.8 0.8 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DapB_N PF01113.20 gi|145590779|ref|YP_001152781.1| - 0.043 14.0 0.1 0.71 10.0 0.0 2.3 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ELFV_dehydrog PF00208.21 gi|145590779|ref|YP_001152781.1| - 0.076 12.7 0.1 0.12 12.0 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_10 PF13460.6 gi|145590779|ref|YP_001152781.1| - 0.11 12.4 1.8 0.12 12.3 0.4 1.7 2 0 0 2 2 2 0 NAD(P)H-binding FAA_hydrolase PF01557.18 gi|145590780|ref|YP_001152782.1| - 6.1e-67 225.5 0.0 7.6e-67 225.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family LigA PF07746.11 gi|145590781|ref|YP_001152783.1| - 1.8e-06 28.0 0.0 2e-06 27.8 0.0 1.0 1 0 0 1 1 1 1 Aromatic-ring-opening dioxygenase LigAB, LigA subunit LigB PF02900.18 gi|145590783|ref|YP_001152785.1| - 6e-28 97.7 0.0 7e-28 97.5 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase Rieske_2 PF13806.6 gi|145590784|ref|YP_001152786.1| - 1.8e-13 50.3 0.0 2.1e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Rieske PF00355.26 gi|145590784|ref|YP_001152786.1| - 2.6e-10 40.1 0.0 3.4e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HN PF00423.19 gi|145590784|ref|YP_001152786.1| - 0.2 10.4 0.0 0.22 10.3 0.0 1.0 1 0 0 1 1 1 0 Haemagglutinin-neuraminidase ETF PF01012.21 gi|145590785|ref|YP_001152787.1| - 2.7e-77 258.8 0.4 5.7e-40 137.1 0.3 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|145590785|ref|YP_001152787.1| - 4.8e-27 93.8 0.8 1e-26 92.7 0.3 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ADH_zinc_N PF00107.26 gi|145590785|ref|YP_001152787.1| - 0.46 10.5 0.1 0.46 10.5 0.1 3.2 4 0 0 4 4 4 0 Zinc-binding dehydrogenase FeS_assembly_P PF01883.19 gi|145590786|ref|YP_001152788.1| - 5.7e-18 64.9 0.2 1.1e-17 64.0 0.2 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein MR_MLE_C PF13378.6 gi|145590786|ref|YP_001152788.1| - 0.087 12.4 0.1 0.18 11.3 0.1 1.5 1 1 0 1 1 1 0 Enolase C-terminal domain-like Phenol_Hydrox PF02332.18 gi|145590787|ref|YP_001152789.1| - 8.8e-50 169.4 5.0 1.2e-49 169.0 5.0 1.2 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase MmoB_DmpM PF02406.17 gi|145590788|ref|YP_001152790.1| - 5.3e-19 68.2 0.0 6.3e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 MmoB/DmpM family Rieske PF00355.26 gi|145590789|ref|YP_001152791.1| - 6.5e-13 48.4 0.0 9.7e-13 47.9 0.0 1.3 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|145590789|ref|YP_001152791.1| - 0.00021 21.2 0.0 0.00057 19.8 0.0 1.6 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain HSP20 PF00011.21 gi|145590789|ref|YP_001152791.1| - 0.095 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Hsp20/alpha crystallin family TmoB PF06234.12 gi|145590790|ref|YP_001152792.1| - 4.5e-06 26.7 0.0 7.1e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Toluene-4-monooxygenase system protein B (TmoB) YHS PF04945.13 gi|145590791|ref|YP_001152793.1| - 1.4e-07 31.5 0.0 2.6e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|145590791|ref|YP_001152793.1| - 0.1 12.6 0.3 0.21 11.6 0.3 1.6 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif ADH_N PF08240.12 gi|145590792|ref|YP_001152794.1| - 4.7e-31 106.9 0.9 7.3e-31 106.3 0.9 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|145590792|ref|YP_001152794.1| - 1.8e-21 76.5 0.1 3e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|145590792|ref|YP_001152794.1| - 1.8e-09 38.8 0.0 3.9e-09 37.7 0.0 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|145590792|ref|YP_001152794.1| - 8.5e-07 28.7 0.1 1.4e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus AlaDh_PNT_C PF01262.21 gi|145590792|ref|YP_001152794.1| - 3.2e-06 26.6 0.7 6e-06 25.7 0.7 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|145590792|ref|YP_001152794.1| - 0.01 15.7 0.2 0.016 15.1 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|145590792|ref|YP_001152794.1| - 0.015 14.8 0.1 0.025 14.0 0.1 1.4 1 0 0 1 1 1 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|145590792|ref|YP_001152794.1| - 0.018 14.4 0.1 0.03 13.7 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Urocanase PF01175.18 gi|145590792|ref|YP_001152794.1| - 0.025 14.2 0.1 0.039 13.6 0.1 1.3 1 0 0 1 1 1 0 Urocanase Rossmann-like domain NAD_binding_7 PF13241.6 gi|145590792|ref|YP_001152794.1| - 0.04 14.4 0.0 0.089 13.2 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|145590792|ref|YP_001152794.1| - 0.058 13.7 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|145590792|ref|YP_001152794.1| - 0.066 13.4 0.1 0.11 12.7 0.1 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Methyltransf_25 PF13649.6 gi|145590792|ref|YP_001152794.1| - 0.23 12.2 0.5 0.55 11.0 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Phenol_Hydrox PF02332.18 gi|145590793|ref|YP_001152795.1| - 4.2e-65 219.5 0.9 5e-65 219.3 0.9 1.0 1 0 0 1 1 1 1 Methane/Phenol/Toluene Hydroxylase TFIIE_beta PF02186.15 gi|145590793|ref|YP_001152795.1| - 0.084 13.2 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 TFIIE beta subunit core domain Protoglobin PF11563.8 gi|145590794|ref|YP_001152796.1| - 1.4e-28 99.8 0.0 1.5e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 Protoglobin MarR PF01047.22 gi|145590795|ref|YP_001152797.1| - 2.5e-07 30.5 3.3 7.9e-07 28.9 0.1 2.8 3 0 0 3 3 3 1 MarR family TrmB PF01978.19 gi|145590795|ref|YP_001152797.1| - 4e-05 23.4 0.2 0.00029 20.6 0.1 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|145590795|ref|YP_001152797.1| - 4.3e-05 23.3 1.3 0.0011 18.7 0.2 2.4 2 0 0 2 2 2 1 MarR family Fe_dep_repress PF01325.19 gi|145590795|ref|YP_001152797.1| - 0.0021 18.2 0.1 0.0088 16.2 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF4364 PF14277.6 gi|145590795|ref|YP_001152797.1| - 0.0036 17.1 0.1 0.009 15.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) DUF4423 PF14394.6 gi|145590795|ref|YP_001152797.1| - 0.0036 17.0 0.1 0.0053 16.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF1307 PF06998.11 gi|145590795|ref|YP_001152797.1| - 0.0082 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1307) HTH_27 PF13463.6 gi|145590795|ref|YP_001152797.1| - 0.014 15.9 2.0 0.12 12.8 0.2 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|145590795|ref|YP_001152797.1| - 0.018 15.0 2.0 0.28 11.2 0.0 2.6 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|145590795|ref|YP_001152797.1| - 0.025 14.6 0.5 0.025 14.6 0.5 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|145590795|ref|YP_001152797.1| - 0.035 13.9 1.9 0.094 12.5 0.3 2.5 2 1 0 2 2 2 0 IclR helix-turn-helix domain HxlR PF01638.17 gi|145590795|ref|YP_001152797.1| - 0.071 13.0 0.4 0.38 10.6 0.0 2.1 1 1 1 2 2 2 0 HxlR-like helix-turn-helix LexA_DNA_bind PF01726.16 gi|145590795|ref|YP_001152797.1| - 0.1 12.4 0.5 0.87 9.4 0.0 2.3 2 0 0 2 2 2 0 LexA DNA binding domain HTH_24 PF13412.6 gi|145590795|ref|YP_001152797.1| - 0.11 12.1 2.1 0.48 10.0 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding Glyoxalase PF00903.25 gi|145590796|ref|YP_001152798.1| - 7.3e-11 42.4 0.2 0.00024 21.3 0.0 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|145590796|ref|YP_001152798.1| - 0.0054 17.0 0.0 1.2 9.5 0.0 2.8 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TPR_7 PF13176.6 gi|145590796|ref|YP_001152798.1| - 0.0071 16.3 0.1 0.46 10.6 0.0 2.6 2 0 0 2 2 2 1 Tetratricopeptide repeat Glyoxalase_3 PF13468.6 gi|145590796|ref|YP_001152798.1| - 0.034 14.3 0.1 5.9 7.0 0.0 2.3 2 0 0 2 2 2 0 Glyoxalase-like domain GSDH PF07995.11 gi|145590797|ref|YP_001152799.1| - 2.7e-83 280.1 0.0 3.7e-83 279.6 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Fer4 PF00037.27 gi|145590798|ref|YP_001152800.1| - 2.7e-10 39.6 11.5 2.5e-07 30.2 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145590798|ref|YP_001152800.1| - 4.4e-08 32.9 11.8 6.7e-06 25.9 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145590798|ref|YP_001152800.1| - 7.2e-08 32.9 18.8 1.7e-05 25.3 8.1 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590798|ref|YP_001152800.1| - 8.1e-08 33.1 2.9 0.0015 19.4 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|145590798|ref|YP_001152800.1| - 7.4e-07 28.9 7.7 2.7e-05 24.0 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145590798|ref|YP_001152800.1| - 2.3e-06 27.6 6.5 1.4e-05 25.1 7.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145590798|ref|YP_001152800.1| - 2.9e-06 27.3 4.7 1.1e-05 25.6 4.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145590798|ref|YP_001152800.1| - 8.5e-06 25.8 4.7 1.3e-05 25.2 4.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145590798|ref|YP_001152800.1| - 6.2e-05 23.6 11.2 0.024 15.5 4.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|145590798|ref|YP_001152800.1| - 0.00037 21.0 5.4 0.089 13.3 5.4 2.2 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590798|ref|YP_001152800.1| - 0.00094 19.5 12.0 0.0012 19.2 3.1 2.5 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_8 PF13183.6 gi|145590798|ref|YP_001152800.1| - 0.0026 18.2 8.0 0.11 13.0 2.8 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145590798|ref|YP_001152800.1| - 0.019 15.5 8.0 0.038 14.5 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|145590798|ref|YP_001152800.1| - 0.035 14.8 9.2 0.07 13.9 1.2 2.5 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|145590798|ref|YP_001152800.1| - 0.097 12.9 7.6 0.52 10.5 2.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145590798|ref|YP_001152800.1| - 0.18 12.7 3.0 1 10.3 1.4 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Aldedh PF00171.22 gi|145590799|ref|YP_001152801.1| - 6.6e-122 407.3 0.0 7.9e-122 407.1 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|145590799|ref|YP_001152801.1| - 0.0032 16.6 0.0 0.0075 15.4 0.0 1.5 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) YCII PF03795.14 gi|145590799|ref|YP_001152801.1| - 0.11 12.9 0.0 0.5 10.8 0.0 2.1 1 1 0 1 1 1 0 YCII-related domain PaREP1 PF05942.11 gi|145590800|ref|YP_001152802.1| - 1.7e-24 85.9 0.0 2.1e-24 85.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RHH_6 PF16762.5 gi|145590801|ref|YP_001152803.1| - 0.043 14.4 0.0 0.063 13.9 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix domain HTH_32 PF13565.6 gi|145590801|ref|YP_001152803.1| - 0.084 13.5 0.9 0.23 12.1 0.9 1.7 1 1 0 1 1 1 0 Homeodomain-like domain PIN PF01850.21 gi|145590802|ref|YP_001152804.1| - 5.2e-14 52.8 0.1 6.1e-14 52.6 0.1 1.1 1 0 0 1 1 1 1 PIN domain Lyase_1 PF00206.20 gi|145590803|ref|YP_001152805.1| - 5.7e-83 278.9 0.0 7.3e-83 278.5 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|145590803|ref|YP_001152805.1| - 9.7e-08 32.3 0.1 4.5e-07 30.2 0.1 2.2 1 1 0 1 1 1 1 Fumarase C C-terminus Tombus_P33 PF08500.10 gi|145590803|ref|YP_001152805.1| - 0.12 12.3 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Tombusvirus p33 Phage_TAC_6 PF09550.10 gi|145590803|ref|YP_001152805.1| - 0.32 11.4 1.8 0.92 10.0 0.7 2.3 2 0 0 2 2 2 0 Phage tail assembly chaperone protein, TAC Pyr_redox_2 PF07992.14 gi|145590804|ref|YP_001152806.1| - 2.2e-47 161.7 0.7 2.7e-47 161.4 0.7 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145590804|ref|YP_001152806.1| - 1.1e-30 106.9 0.1 2.3e-24 86.2 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145590804|ref|YP_001152806.1| - 7e-20 71.4 1.7 6.4e-13 49.1 0.0 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|145590804|ref|YP_001152806.1| - 8.4e-12 44.9 10.8 1.7e-05 24.1 1.1 4.6 2 2 3 5 5 5 2 FAD binding domain FAD_oxidored PF12831.7 gi|145590804|ref|YP_001152806.1| - 1.9e-09 37.4 3.5 2.4e-08 33.8 0.1 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|145590804|ref|YP_001152806.1| - 9e-09 34.9 5.9 0.00015 21.0 1.0 4.0 4 0 0 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|145590804|ref|YP_001152806.1| - 5e-07 28.8 3.2 0.002 16.9 0.5 3.5 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|145590804|ref|YP_001152806.1| - 1.3e-06 27.9 1.9 0.0073 15.6 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.6 gi|145590804|ref|YP_001152806.1| - 1e-05 25.6 0.4 0.0014 18.8 0.1 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.6 gi|145590804|ref|YP_001152806.1| - 6.4e-05 23.3 0.4 0.021 15.2 0.1 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.24 gi|145590804|ref|YP_001152806.1| - 9.3e-05 22.2 5.6 0.0067 16.0 1.3 3.0 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|145590804|ref|YP_001152806.1| - 0.00031 20.1 0.9 0.0039 16.5 0.1 2.7 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|145590804|ref|YP_001152806.1| - 0.002 17.4 1.7 0.48 9.7 0.9 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.6 gi|145590804|ref|YP_001152806.1| - 0.012 14.7 0.5 0.29 10.2 0.0 2.7 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|145590804|ref|YP_001152806.1| - 0.019 14.9 1.6 1.8 8.5 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|145590804|ref|YP_001152806.1| - 0.076 12.0 1.4 0.39 9.7 0.4 2.3 2 1 1 3 3 3 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|145590804|ref|YP_001152806.1| - 0.1 11.4 2.5 2.7 6.7 0.6 2.3 2 0 0 2 2 2 0 Tryptophan halogenase MFS18 PF17352.2 gi|145590805|ref|YP_001152807.1| - 1.6 9.2 11.1 3.4 8.1 11.1 1.6 1 0 0 1 1 1 0 Male Flower Specific protein 18 TrmB PF01978.19 gi|145590806|ref|YP_001152808.1| - 0.0023 17.8 0.6 0.0033 17.3 0.6 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Pilin_N PF07790.11 gi|145590806|ref|YP_001152808.1| - 0.011 16.7 0.1 1.4 9.9 0.0 2.7 3 0 0 3 3 3 0 Archaeal Type IV pilin, N-terminal MarR_2 PF12802.7 gi|145590806|ref|YP_001152808.1| - 0.013 15.4 0.1 0.02 14.7 0.1 1.3 1 0 0 1 1 1 0 MarR family DUF2582 PF10771.9 gi|145590806|ref|YP_001152808.1| - 0.1 12.7 0.3 0.16 12.2 0.3 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) DUF411 PF04214.13 gi|145590807|ref|YP_001152809.1| - 2.9e-16 59.2 0.1 4.5e-16 58.5 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF DUF2162 PF09930.9 gi|145590807|ref|YP_001152809.1| - 0.0005 19.6 0.1 0.00068 19.1 0.1 1.1 1 0 0 1 1 1 1 Predicted transporter (DUF2162) DUF948 PF06103.11 gi|145590807|ref|YP_001152809.1| - 0.11 12.8 0.2 0.16 12.2 0.2 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) E1-E2_ATPase PF00122.20 gi|145590808|ref|YP_001152810.1| - 1.6e-55 187.4 0.1 1.6e-55 187.4 0.1 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|145590808|ref|YP_001152810.1| - 3.1e-40 138.7 2.3 5.8e-40 137.8 2.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|145590808|ref|YP_001152810.1| - 5.7e-16 58.7 0.9 8.5e-10 38.9 0.0 3.8 3 0 0 3 3 3 3 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|145590808|ref|YP_001152810.1| - 6.8e-07 29.3 0.4 0.00018 21.3 0.3 2.3 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145590808|ref|YP_001152810.1| - 2.6e-06 27.9 0.1 1.5e-05 25.5 0.1 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase SPOR PF05036.13 gi|145590808|ref|YP_001152810.1| - 0.0019 18.5 0.6 0.079 13.4 0.0 3.8 4 0 0 4 4 4 1 Sporulation related domain GIDE PF12483.8 gi|145590808|ref|YP_001152810.1| - 0.0051 16.2 0.2 0.71 9.3 0.0 2.7 2 1 0 2 2 2 1 E3 Ubiquitin ligase DAHP_snth_FXD PF18152.1 gi|145590808|ref|YP_001152810.1| - 0.037 13.9 0.7 3.6 7.5 0.0 2.9 3 0 0 3 3 3 0 DAHP synthase ferredoxin-like domain Rbx_binding PF18113.1 gi|145590808|ref|YP_001152810.1| - 0.14 12.0 0.1 0.62 9.9 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin binding C-terminal domain PaREP1 PF05942.11 gi|145590809|ref|YP_001152811.1| - 6.4e-26 90.5 1.3 8.3e-26 90.2 1.3 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|145590809|ref|YP_001152811.1| - 0.043 13.9 0.8 0.064 13.4 0.8 1.4 1 0 0 1 1 1 0 HEPN domain DUF1771 PF08590.10 gi|145590809|ref|YP_001152811.1| - 0.057 13.8 0.0 0.14 12.5 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) PaREP1 PF05942.11 gi|145590810|ref|YP_001152812.1| - 1.2e-22 80.0 0.2 3e-22 78.7 0.1 1.6 1 1 1 2 2 2 1 Archaeal PaREP1/PaREP8 family PreAtp-grasp PF18604.1 gi|145590810|ref|YP_001152812.1| - 0.0094 15.6 0.1 0.02 14.5 0.1 1.6 1 1 0 1 1 1 1 Pre ATP-grasp domain DUF3100 PF11299.8 gi|145590810|ref|YP_001152812.1| - 0.014 14.8 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3100) TPR_20 PF14561.6 gi|145590810|ref|YP_001152812.1| - 0.066 13.5 1.2 0.23 11.8 1.1 1.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Nitrate_red_del PF02613.15 gi|145590811|ref|YP_001152813.1| - 4e-08 33.4 0.0 6.3e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit ThiF PF00899.21 gi|145590812|ref|YP_001152814.1| - 6.3e-63 212.4 0.0 7.6e-63 212.1 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|145590812|ref|YP_001152814.1| - 0.0073 16.6 1.2 0.034 14.4 1.2 1.9 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|145590812|ref|YP_001152814.1| - 0.028 13.8 1.1 0.13 11.6 0.8 2.0 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GDPD PF03009.17 gi|145590813|ref|YP_001152815.1| - 1.9e-33 116.3 0.2 5.9e-23 81.9 0.0 2.1 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|145590813|ref|YP_001152815.1| - 5.6e-06 26.6 1.7 5.6e-06 26.6 1.7 2.1 2 0 0 2 2 2 1 Glycerophosphoryl diester phosphodiesterase family FlaC_arch PF05377.11 gi|145590814|ref|YP_001152816.1| - 6.8e-06 26.4 1.3 0.0018 18.6 2.1 2.4 1 1 1 2 2 2 2 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|145590814|ref|YP_001152816.1| - 1.2e-05 25.3 0.1 1.7e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF4618 PF15397.6 gi|145590814|ref|YP_001152816.1| - 1.7e-05 24.4 0.5 0.0055 16.2 0.1 2.0 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) DUF2730 PF10805.8 gi|145590814|ref|YP_001152816.1| - 1.9e-05 24.7 0.6 2.6e-05 24.2 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) EzrA PF06160.12 gi|145590814|ref|YP_001152816.1| - 2e-05 23.0 0.1 2.5e-05 22.7 0.1 1.0 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Prefoldin_2 PF01920.20 gi|145590814|ref|YP_001152816.1| - 2.2e-05 24.4 0.2 0.006 16.5 0.4 2.1 1 1 1 2 2 2 1 Prefoldin subunit HrpB7 PF09486.10 gi|145590814|ref|YP_001152816.1| - 3.2e-05 24.4 1.4 4.4e-05 23.9 1.4 1.2 1 0 0 1 1 1 1 Bacterial type III secretion protein (HrpB7) Baculo_PEP_C PF04513.12 gi|145590814|ref|YP_001152816.1| - 5.2e-05 23.3 0.2 7.5e-05 22.8 0.2 1.3 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus CLZ PF16526.5 gi|145590814|ref|YP_001152816.1| - 7.6e-05 23.0 1.0 0.013 15.8 0.4 2.2 1 1 1 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels PspA_IM30 PF04012.12 gi|145590814|ref|YP_001152816.1| - 8.3e-05 22.3 0.2 0.0001 22.0 0.2 1.1 1 0 0 1 1 1 1 PspA/IM30 family DUF4164 PF13747.6 gi|145590814|ref|YP_001152816.1| - 9.3e-05 22.6 1.9 0.00014 22.1 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4164) CENP-F_leu_zip PF10473.9 gi|145590814|ref|YP_001152816.1| - 0.0001 22.3 0.4 0.00013 22.0 0.4 1.1 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin PF00261.20 gi|145590814|ref|YP_001152816.1| - 0.00016 21.2 0.5 0.00018 20.9 0.5 1.1 1 0 0 1 1 1 1 Tropomyosin CALCOCO1 PF07888.11 gi|145590814|ref|YP_001152816.1| - 0.0002 20.4 0.2 0.00024 20.1 0.2 1.0 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like BLOC1_2 PF10046.9 gi|145590814|ref|YP_001152816.1| - 0.00025 21.3 0.2 0.033 14.5 0.1 2.1 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF948 PF06103.11 gi|145590814|ref|YP_001152816.1| - 0.00029 21.0 0.5 0.0037 17.5 0.6 2.1 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF948) DivIC PF04977.15 gi|145590814|ref|YP_001152816.1| - 0.00035 20.3 1.3 0.0056 16.4 0.5 2.2 1 1 1 2 2 2 1 Septum formation initiator Apolipoprotein PF01442.18 gi|145590814|ref|YP_001152816.1| - 0.00037 20.4 0.6 0.00047 20.1 0.6 1.1 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain CCDC144C PF14915.6 gi|145590814|ref|YP_001152816.1| - 0.00037 19.7 0.2 0.00045 19.4 0.2 1.0 1 0 0 1 1 1 1 CCDC144C protein coiled-coil region SlyX PF04102.12 gi|145590814|ref|YP_001152816.1| - 0.00038 21.0 0.6 0.0043 17.6 0.3 2.2 1 1 1 2 2 2 1 SlyX LPP PF04728.13 gi|145590814|ref|YP_001152816.1| - 0.00061 20.1 0.3 0.63 10.5 0.1 2.7 1 1 2 3 3 3 1 Lipoprotein leucine-zipper DUF4472 PF14739.6 gi|145590814|ref|YP_001152816.1| - 0.00062 20.5 0.1 0.00079 20.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4472) bZIP_1 PF00170.21 gi|145590814|ref|YP_001152816.1| - 0.00064 19.8 4.4 0.04 14.0 0.6 2.2 1 1 3 4 4 4 3 bZIP transcription factor NPV_P10 PF05531.12 gi|145590814|ref|YP_001152816.1| - 0.00074 19.9 0.1 0.0025 18.2 0.1 1.9 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein DUF4988 PF16378.5 gi|145590814|ref|YP_001152816.1| - 0.00077 19.2 0.5 0.18 11.4 0.2 2.1 1 1 1 2 2 2 1 Domain of unknown function MscS_porin PF12795.7 gi|145590814|ref|YP_001152816.1| - 0.001 18.7 0.0 0.0012 18.4 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain HSBP1 PF06825.12 gi|145590814|ref|YP_001152816.1| - 0.001 18.9 0.5 2.7 7.9 0.0 3.5 1 1 3 4 4 4 0 Heat shock factor binding protein 1 TolA_bind_tri PF16331.5 gi|145590814|ref|YP_001152816.1| - 0.0013 18.8 0.4 0.0044 17.1 0.4 1.9 1 1 0 1 1 1 1 TolA binding protein trimerisation Spc7 PF08317.11 gi|145590814|ref|YP_001152816.1| - 0.0015 17.5 0.2 0.0018 17.2 0.2 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF2046 PF09755.9 gi|145590814|ref|YP_001152816.1| - 0.0018 17.6 0.1 0.0023 17.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein H4 (DUF2046) GrpE PF01025.19 gi|145590814|ref|YP_001152816.1| - 0.0019 17.9 0.3 0.011 15.4 0.3 1.8 1 1 0 1 1 1 1 GrpE Myosin_tail_1 PF01576.19 gi|145590814|ref|YP_001152816.1| - 0.0021 16.0 0.5 0.0025 15.7 0.5 1.0 1 0 0 1 1 1 1 Myosin tail Macoilin PF09726.9 gi|145590814|ref|YP_001152816.1| - 0.0022 16.7 0.1 0.0025 16.5 0.1 1.0 1 0 0 1 1 1 1 Macoilin family TMF_DNA_bd PF12329.8 gi|145590814|ref|YP_001152816.1| - 0.0023 17.9 1.0 0.0087 16.0 0.5 1.8 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|145590814|ref|YP_001152816.1| - 0.0023 18.2 0.8 0.0028 17.9 0.8 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) DUF4795 PF16043.5 gi|145590814|ref|YP_001152816.1| - 0.0023 17.6 1.9 0.077 12.6 0.3 1.6 1 1 1 2 2 2 2 Domain of unknown function (DUF4795) XhlA PF10779.9 gi|145590814|ref|YP_001152816.1| - 0.0023 18.1 2.3 0.011 15.9 2.2 2.1 1 1 0 1 1 1 1 Haemolysin XhlA ADIP PF11559.8 gi|145590814|ref|YP_001152816.1| - 0.0023 18.0 0.2 0.0033 17.5 0.2 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding Nup54 PF13874.6 gi|145590814|ref|YP_001152816.1| - 0.0024 18.0 0.7 0.0056 16.8 0.6 1.5 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 Fib_alpha PF08702.10 gi|145590814|ref|YP_001152816.1| - 0.0024 18.1 0.4 0.0053 16.9 0.4 1.5 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family COG2 PF06148.11 gi|145590814|ref|YP_001152816.1| - 0.0026 17.8 1.3 0.0089 16.1 1.1 1.8 1 1 0 1 1 1 1 COG (conserved oligomeric Golgi) complex component, COG2 Snapin_Pallidin PF14712.6 gi|145590814|ref|YP_001152816.1| - 0.0027 18.1 0.4 0.0059 17.0 0.4 1.6 1 1 0 1 1 1 1 Snapin/Pallidin TACC_C PF05010.14 gi|145590814|ref|YP_001152816.1| - 0.0028 17.5 0.2 0.0035 17.1 0.2 1.1 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Laminin_II PF06009.12 gi|145590814|ref|YP_001152816.1| - 0.003 17.6 0.5 0.0043 17.1 0.5 1.3 1 0 0 1 1 1 1 Laminin Domain II DUF16 PF01519.16 gi|145590814|ref|YP_001152816.1| - 0.0035 17.8 0.1 0.0048 17.4 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF16 Cnn_1N PF07989.11 gi|145590814|ref|YP_001152816.1| - 0.0038 17.4 0.5 0.0052 16.9 0.5 1.3 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 MAD PF05557.13 gi|145590814|ref|YP_001152816.1| - 0.0039 15.6 0.4 0.0046 15.4 0.4 1.0 1 0 0 1 1 1 1 Mitotic checkpoint protein Seryl_tRNA_N PF02403.22 gi|145590814|ref|YP_001152816.1| - 0.0041 17.3 1.0 0.011 16.0 1.0 1.6 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain bZIP_2 PF07716.15 gi|145590814|ref|YP_001152816.1| - 0.0043 17.1 1.2 0.14 12.3 0.5 2.4 1 1 1 2 2 2 1 Basic region leucine zipper AAA_13 PF13166.6 gi|145590814|ref|YP_001152816.1| - 0.0046 15.7 0.1 0.0052 15.5 0.1 1.0 1 0 0 1 1 1 1 AAA domain Atg14 PF10186.9 gi|145590814|ref|YP_001152816.1| - 0.0053 15.9 0.2 0.0064 15.6 0.2 1.1 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 BicD PF09730.9 gi|145590814|ref|YP_001152816.1| - 0.0055 15.2 0.2 0.0066 14.9 0.2 1.0 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Syntaxin PF00804.25 gi|145590814|ref|YP_001152816.1| - 0.0058 16.3 0.6 0.0073 16.0 0.6 1.1 1 0 0 1 1 1 1 Syntaxin GAS PF13851.6 gi|145590814|ref|YP_001152816.1| - 0.0063 15.9 0.1 0.026 13.9 0.0 1.6 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding MbeD_MobD PF04899.12 gi|145590814|ref|YP_001152816.1| - 0.0066 16.5 0.4 2.2 8.5 0.0 2.2 1 1 1 2 2 2 0 MbeD/MobD like Fzo_mitofusin PF04799.13 gi|145590814|ref|YP_001152816.1| - 0.0067 16.0 0.4 0.073 12.6 0.4 1.9 1 1 1 2 2 2 1 fzo-like conserved region HMMR_N PF15905.5 gi|145590814|ref|YP_001152816.1| - 0.0067 15.9 0.2 0.0081 15.7 0.2 1.1 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF2205 PF10224.9 gi|145590814|ref|YP_001152816.1| - 0.0069 16.3 1.4 0.2 11.7 0.8 2.6 1 1 1 2 2 2 1 Short coiled-coil protein DUF3584 PF12128.8 gi|145590814|ref|YP_001152816.1| - 0.0071 13.9 0.0 0.0085 13.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) ZapB PF06005.12 gi|145590814|ref|YP_001152816.1| - 0.0072 16.8 0.7 0.012 16.0 0.7 1.4 1 1 0 1 1 1 1 Cell division protein ZapB Laminin_I PF06008.14 gi|145590814|ref|YP_001152816.1| - 0.008 15.9 0.1 0.0091 15.7 0.1 1.1 1 0 0 1 1 1 1 Laminin Domain I DUF3450 PF11932.8 gi|145590814|ref|YP_001152816.1| - 0.0082 15.5 0.1 0.0092 15.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) SF-assemblin PF06705.11 gi|145590814|ref|YP_001152816.1| - 0.0084 15.5 0.2 0.012 15.0 0.2 1.3 1 0 0 1 1 1 1 SF-assemblin/beta giardin ABC_tran_CTD PF16326.5 gi|145590814|ref|YP_001152816.1| - 0.0088 16.3 0.1 0.035 14.4 0.1 1.9 1 1 0 1 1 1 1 ABC transporter C-terminal domain TelA PF05816.11 gi|145590814|ref|YP_001152816.1| - 0.009 15.1 0.1 0.011 14.8 0.1 1.3 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) Prominin PF05478.11 gi|145590814|ref|YP_001152816.1| - 0.0093 14.0 0.1 0.011 13.8 0.1 1.0 1 0 0 1 1 1 1 Prominin SHE3 PF17078.5 gi|145590814|ref|YP_001152816.1| - 0.0095 15.7 0.1 0.012 15.3 0.1 1.2 1 0 0 1 1 1 1 SWI5-dependent HO expression protein 3 HalX PF08663.10 gi|145590814|ref|YP_001152816.1| - 0.0097 16.2 2.0 0.6 10.5 0.5 2.6 1 1 1 2 2 2 1 HalX domain Vps53_N PF04100.12 gi|145590814|ref|YP_001152816.1| - 0.011 14.8 0.1 0.013 14.5 0.1 1.0 1 0 0 1 1 1 0 Vps53-like, N-terminal DASH_Dad2 PF08654.10 gi|145590814|ref|YP_001152816.1| - 0.011 16.1 0.3 0.2 12.1 0.3 2.0 1 1 1 2 2 2 0 DASH complex subunit Dad2 TPR_MLP1_2 PF07926.12 gi|145590814|ref|YP_001152816.1| - 0.011 15.8 0.4 0.21 11.7 0.2 1.9 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Jnk-SapK_ap_N PF09744.9 gi|145590814|ref|YP_001152816.1| - 0.012 15.8 0.1 0.016 15.5 0.1 1.2 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 HemX PF04375.14 gi|145590814|ref|YP_001152816.1| - 0.012 14.9 0.0 0.016 14.5 0.0 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase PspB PF06667.12 gi|145590814|ref|YP_001152816.1| - 0.012 15.6 1.0 0.091 12.8 0.1 2.2 1 1 2 3 3 3 0 Phage shock protein B LMP PF04778.12 gi|145590814|ref|YP_001152816.1| - 0.013 15.5 0.1 0.015 15.2 0.1 1.1 1 0 0 1 1 1 0 LMP repeated region Spc24 PF08286.11 gi|145590814|ref|YP_001152816.1| - 0.013 15.7 0.6 0.028 14.6 0.6 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 APG6_N PF17675.1 gi|145590814|ref|YP_001152816.1| - 0.013 16.0 0.0 0.016 15.7 0.0 1.1 1 0 0 1 1 1 0 Apg6 coiled-coil region Tmemb_cc2 PF10267.9 gi|145590814|ref|YP_001152816.1| - 0.013 14.6 0.2 0.017 14.3 0.2 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Nup88 PF10168.9 gi|145590814|ref|YP_001152816.1| - 0.013 13.3 0.2 0.015 13.1 0.2 1.0 1 0 0 1 1 1 0 Nuclear pore component Tektin PF03148.14 gi|145590814|ref|YP_001152816.1| - 0.014 14.2 0.7 0.031 13.0 0.8 1.5 1 1 1 2 2 2 0 Tektin family DUF3086 PF11285.8 gi|145590814|ref|YP_001152816.1| - 0.014 14.5 0.2 0.021 13.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) Fez1 PF06818.15 gi|145590814|ref|YP_001152816.1| - 0.014 15.8 0.2 0.017 15.6 0.2 1.1 1 0 0 1 1 1 0 Fez1 APG17 PF04108.12 gi|145590814|ref|YP_001152816.1| - 0.015 14.4 0.2 0.027 13.6 0.2 1.5 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF5082 PF16888.5 gi|145590814|ref|YP_001152816.1| - 0.015 15.5 0.4 0.96 9.7 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) DUF4446 PF14584.6 gi|145590814|ref|YP_001152816.1| - 0.017 15.1 0.5 0.027 14.5 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Syntaxin-6_N PF09177.11 gi|145590814|ref|YP_001152816.1| - 0.018 15.6 0.4 0.12 12.9 0.4 1.7 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Filament PF00038.21 gi|145590814|ref|YP_001152816.1| - 0.019 14.6 0.2 0.023 14.3 0.2 1.1 1 0 0 1 1 1 0 Intermediate filament protein Med9 PF07544.13 gi|145590814|ref|YP_001152816.1| - 0.019 15.0 0.3 0.039 14.0 0.3 1.7 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DHR10 PF18595.1 gi|145590814|ref|YP_001152816.1| - 0.019 15.0 0.5 0.032 14.3 0.5 1.4 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain DUF4140 PF13600.6 gi|145590814|ref|YP_001152816.1| - 0.02 15.3 1.1 0.039 14.4 1.1 1.6 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) MCPsignal PF00015.21 gi|145590814|ref|YP_001152816.1| - 0.021 14.6 0.1 0.026 14.3 0.1 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain FPP PF05911.11 gi|145590814|ref|YP_001152816.1| - 0.021 13.0 0.1 0.024 12.9 0.1 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil IFT57 PF10498.9 gi|145590814|ref|YP_001152816.1| - 0.023 13.7 0.0 0.025 13.6 0.0 1.0 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 CorA PF01544.18 gi|145590814|ref|YP_001152816.1| - 0.023 14.0 0.9 0.037 13.3 0.9 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein COG5 PF10392.9 gi|145590814|ref|YP_001152816.1| - 0.023 14.8 0.3 0.055 13.6 0.3 1.6 1 1 0 1 1 1 0 Golgi transport complex subunit 5 KxDL PF10241.9 gi|145590814|ref|YP_001152816.1| - 0.023 14.9 0.3 0.035 14.4 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|145590814|ref|YP_001152816.1| - 0.024 14.2 0.0 0.027 14.0 0.0 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit DASH_Spc19 PF08287.11 gi|145590814|ref|YP_001152816.1| - 0.025 14.5 1.3 0.14 12.1 1.3 1.9 1 1 1 2 2 2 0 Spc19 YscO PF07321.12 gi|145590814|ref|YP_001152816.1| - 0.032 14.2 2.3 0.055 13.4 2.3 1.5 1 1 0 1 1 1 0 Type III secretion protein YscO PI3K_P85_iSH2 PF16454.5 gi|145590814|ref|YP_001152816.1| - 0.037 13.6 0.3 0.083 12.5 0.3 1.5 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HAUS-augmin3 PF14932.6 gi|145590814|ref|YP_001152816.1| - 0.037 13.6 0.0 0.042 13.4 0.0 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 TMF_TATA_bd PF12325.8 gi|145590814|ref|YP_001152816.1| - 0.04 14.1 0.3 0.055 13.7 0.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding AIP3 PF03915.13 gi|145590814|ref|YP_001152816.1| - 0.041 13.0 0.1 0.045 12.8 0.1 1.0 1 0 0 1 1 1 0 Actin interacting protein 3 DUF2203 PF09969.9 gi|145590814|ref|YP_001152816.1| - 0.041 14.6 0.2 0.081 13.6 0.2 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Bacillus_HBL PF05791.11 gi|145590814|ref|YP_001152816.1| - 0.041 13.7 0.1 0.052 13.4 0.1 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) EMP24_GP25L PF01105.24 gi|145590814|ref|YP_001152816.1| - 0.045 13.7 0.5 0.19 11.6 0.5 1.9 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD BRE1 PF08647.11 gi|145590814|ref|YP_001152816.1| - 0.046 13.8 0.5 0.087 12.9 0.2 1.5 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase DUF4407 PF14362.6 gi|145590814|ref|YP_001152816.1| - 0.05 12.9 0.2 0.13 11.6 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sec34 PF04136.15 gi|145590814|ref|YP_001152816.1| - 0.057 13.3 0.1 0.069 13.0 0.1 1.2 1 0 0 1 1 1 0 Sec34-like family SKA2 PF16740.5 gi|145590814|ref|YP_001152816.1| - 0.057 13.2 0.1 0.51 10.1 0.1 2.0 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Uso1_p115_C PF04871.13 gi|145590814|ref|YP_001152816.1| - 0.059 13.7 0.1 0.078 13.4 0.1 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DASH_Dam1 PF08653.10 gi|145590814|ref|YP_001152816.1| - 0.06 13.1 0.1 1.4 8.8 0.0 2.4 1 1 1 2 2 2 0 DASH complex subunit Dam1 CENP-H PF05837.12 gi|145590814|ref|YP_001152816.1| - 0.062 13.7 0.8 0.09 13.2 0.6 1.4 1 1 0 1 1 1 0 Centromere protein H (CENP-H) Fmp27_WPPW PF10359.9 gi|145590814|ref|YP_001152816.1| - 0.064 12.1 0.1 0.069 12.0 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain BST2 PF16716.5 gi|145590814|ref|YP_001152816.1| - 0.064 13.8 0.2 0.19 12.4 0.1 1.7 1 1 1 2 2 2 0 Bone marrow stromal antigen 2 Prefoldin PF02996.17 gi|145590814|ref|YP_001152816.1| - 0.067 13.1 0.4 4.3 7.3 0.1 2.0 1 1 1 2 2 2 0 Prefoldin subunit Spc29 PF17082.5 gi|145590814|ref|YP_001152816.1| - 0.068 13.0 0.2 0.09 12.6 0.2 1.3 1 0 0 1 1 1 0 Spindle Pole Component 29 Tropomyosin_1 PF12718.7 gi|145590814|ref|YP_001152816.1| - 0.07 13.3 0.9 0.14 12.3 0.9 1.4 1 1 0 1 1 1 0 Tropomyosin like CdvA PF18822.1 gi|145590814|ref|YP_001152816.1| - 0.072 12.9 2.5 0.91 9.4 1.8 2.2 1 1 1 2 2 2 0 CdvA-like coiled-coil domain DUF4200 PF13863.6 gi|145590814|ref|YP_001152816.1| - 0.074 13.5 0.2 0.097 13.1 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) CREPT PF16566.5 gi|145590814|ref|YP_001152816.1| - 0.075 13.2 0.5 0.14 12.3 0.5 1.4 1 1 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour LPD5 PF18799.1 gi|145590814|ref|YP_001152816.1| - 0.078 13.4 0.4 0.12 12.8 0.4 1.3 1 1 0 1 1 1 0 Large polyvalent protein-associated domain 5 Occludin_ELL PF07303.13 gi|145590814|ref|YP_001152816.1| - 0.082 13.6 0.2 0.21 12.4 0.2 1.6 1 1 0 1 1 1 0 Occludin homology domain STAT_alpha PF01017.20 gi|145590814|ref|YP_001152816.1| - 0.082 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 STAT protein, all-alpha domain VGPC1_C PF16799.5 gi|145590814|ref|YP_001152816.1| - 0.082 12.9 0.1 6.9 6.7 0.0 2.3 1 1 1 2 2 2 0 C-terminal membrane-localisation domain of ion-channel, VCN1 Spectrin PF00435.21 gi|145590814|ref|YP_001152816.1| - 0.088 13.3 0.1 0.12 12.9 0.1 1.2 1 0 0 1 1 1 0 Spectrin repeat DUF4763 PF15960.5 gi|145590814|ref|YP_001152816.1| - 0.088 12.1 0.0 0.1 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Ax_dynein_light PF10211.9 gi|145590814|ref|YP_001152816.1| - 0.09 12.7 0.4 0.16 11.9 0.4 1.4 1 1 0 1 1 1 0 Axonemal dynein light chain TMPIT PF07851.13 gi|145590814|ref|YP_001152816.1| - 0.092 12.0 0.0 0.098 11.9 0.0 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF3829 PF12889.7 gi|145590814|ref|YP_001152816.1| - 0.096 12.1 0.1 0.11 12.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DUF2937 PF11157.8 gi|145590814|ref|YP_001152816.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2937) WXG100 PF06013.12 gi|145590814|ref|YP_001152816.1| - 0.1 12.9 0.1 4.2 7.7 0.0 2.2 1 1 0 1 1 1 0 Proteins of 100 residues with WXG DUF745 PF05335.13 gi|145590814|ref|YP_001152816.1| - 0.11 12.2 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF745) CENP-F_N PF10481.9 gi|145590814|ref|YP_001152816.1| - 0.11 12.1 0.2 0.13 11.8 0.2 1.1 1 0 0 1 1 1 0 Cenp-F N-terminal domain DUF3782 PF12644.7 gi|145590814|ref|YP_001152816.1| - 0.11 12.6 0.9 1.2 9.4 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3782) LXG PF04740.12 gi|145590814|ref|YP_001152816.1| - 0.14 11.8 0.1 0.47 10.1 0.1 1.6 1 1 0 1 1 1 0 LXG domain of WXG superfamily HALZ PF02183.18 gi|145590814|ref|YP_001152816.1| - 0.15 12.3 0.4 23 5.3 0.2 2.4 2 0 0 2 2 2 0 Homeobox associated leucine zipper Mce4_CUP1 PF11887.8 gi|145590814|ref|YP_001152816.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 Cholesterol uptake porter CUP1 of Mce4, putative YabA PF06156.13 gi|145590814|ref|YP_001152816.1| - 0.17 12.5 0.2 0.33 11.6 0.2 1.6 1 1 0 1 1 1 0 Initiation control protein YabA Vac_Fusion PF02346.16 gi|145590814|ref|YP_001152816.1| - 0.55 9.9 2.6 0.85 9.3 0.4 2.3 1 1 0 2 2 1 0 Chordopoxvirus multifunctional envelope protein A27 CCDC-167 PF15188.6 gi|145590814|ref|YP_001152816.1| - 0.8 10.1 6.8 0.1 12.9 1.4 2.3 2 1 0 2 2 1 0 Coiled-coil domain-containing protein 167 JIP_LZII PF16471.5 gi|145590814|ref|YP_001152816.1| - 1 9.6 5.1 0.71 10.1 1.9 2.2 2 1 1 3 3 2 0 JNK-interacting protein leucine zipper II DUF3140 PF11338.8 gi|145590815|ref|YP_001152817.1| - 0.058 13.8 0.0 0.08 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) RGS PF00615.19 gi|145590815|ref|YP_001152817.1| - 0.095 13.0 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Regulator of G protein signaling domain IF-2B PF01008.17 gi|145590815|ref|YP_001152817.1| - 0.11 11.7 0.0 0.12 11.5 0.0 1.0 1 0 0 1 1 1 0 Initiation factor 2 subunit family ABC2_membrane_5 PF13346.6 gi|145590816|ref|YP_001152818.1| - 0.13 11.8 2.5 0.33 10.5 0.4 2.4 2 1 1 3 3 3 0 ABC-2 family transporter protein PepSY_TM_like_2 PF16357.5 gi|145590816|ref|YP_001152818.1| - 0.24 11.4 2.9 1.9 8.4 0.1 2.2 1 1 1 2 2 2 0 Putative PepSY_TM-like Herpes_LMP1 PF05297.11 gi|145590819|ref|YP_001152821.1| - 0.64 9.2 7.1 0.72 9.0 7.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) ABC_tran PF00005.27 gi|145590821|ref|YP_001152823.1| - 1.8e-12 47.9 0.0 2.9e-12 47.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590821|ref|YP_001152823.1| - 5e-08 33.1 0.0 0.00069 19.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145590821|ref|YP_001152823.1| - 0.00077 19.2 0.0 0.0032 17.2 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145590821|ref|YP_001152823.1| - 0.0016 19.0 0.0 0.0022 18.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|145590821|ref|YP_001152823.1| - 0.021 14.4 0.0 0.034 13.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|145590821|ref|YP_001152823.1| - 0.038 14.1 0.0 0.93 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|145590821|ref|YP_001152823.1| - 0.23 11.1 0.0 0.32 10.7 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NosD PF05048.13 gi|145590822|ref|YP_001152824.1| - 9.4e-20 70.9 0.1 3.1e-19 69.2 0.1 1.7 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|145590822|ref|YP_001152824.1| - 5e-18 65.5 5.5 2.9e-14 53.2 0.5 2.5 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.12 gi|145590823|ref|YP_001152825.1| - 0.00021 21.6 0.0 0.00034 21.0 0.0 1.3 1 0 0 1 1 1 1 NosL NosL PF05573.12 gi|145590824|ref|YP_001152826.1| - 2.1e-08 34.6 0.4 1.2e-07 32.1 0.4 2.1 1 1 0 1 1 1 1 NosL SseC PF04888.12 gi|145590824|ref|YP_001152826.1| - 0.26 10.9 7.7 0.38 10.3 7.7 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family Mucin PF01456.17 gi|145590824|ref|YP_001152826.1| - 0.27 11.2 16.3 0.44 10.5 16.3 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein HTH_5 PF01022.20 gi|145590825|ref|YP_001152827.1| - 6.8e-07 29.1 0.0 4.6e-06 26.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|145590825|ref|YP_001152827.1| - 9.5e-05 22.1 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|145590825|ref|YP_001152827.1| - 0.00024 20.6 0.0 0.0004 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|145590825|ref|YP_001152827.1| - 0.00038 20.5 0.0 0.00077 19.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|145590825|ref|YP_001152827.1| - 0.002 18.0 0.0 0.0031 17.4 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|145590825|ref|YP_001152827.1| - 0.0032 17.3 0.0 0.0067 16.3 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|145590825|ref|YP_001152827.1| - 0.068 13.4 0.0 0.094 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain SCO1-SenC PF02630.14 gi|145590826|ref|YP_001152828.1| - 1.5e-20 73.4 0.0 2.2e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA PF00578.21 gi|145590826|ref|YP_001152828.1| - 0.0014 18.5 0.0 0.0022 17.9 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|145590826|ref|YP_001152828.1| - 0.0017 18.1 0.1 0.005 16.5 0.1 1.7 1 1 0 1 1 1 1 Redoxin TPPK_C PF12555.8 gi|145590826|ref|YP_001152828.1| - 0.089 12.8 0.3 0.17 11.9 0.3 1.5 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal AcrZ PF10766.9 gi|145590826|ref|YP_001152828.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.5 1 0 0 1 1 1 0 Multidrug efflux pump-associated protein AcrZ PsbX PF06596.11 gi|145590826|ref|YP_001152828.1| - 0.39 10.7 2.1 0.8 9.8 2.1 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) RseC_MucC PF04246.12 gi|145590827|ref|YP_001152829.1| - 0.034 14.1 0.2 0.034 14.1 0.2 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC NMN_transporter PF04973.12 gi|145590827|ref|YP_001152829.1| - 0.063 13.2 1.4 0.066 13.2 1.4 1.0 1 0 0 1 1 1 0 Nicotinamide mononucleotide transporter DUF2207 PF09972.9 gi|145590827|ref|YP_001152829.1| - 0.11 11.3 0.2 0.12 11.1 0.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HTH_5 PF01022.20 gi|145590829|ref|YP_001152831.1| - 0.00029 20.6 0.6 0.1 12.5 0.0 2.7 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|145590829|ref|YP_001152831.1| - 0.00068 19.4 0.0 0.0017 18.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.15 gi|145590829|ref|YP_001152831.1| - 0.01 15.9 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase TrmB PF01978.19 gi|145590829|ref|YP_001152831.1| - 0.028 14.3 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|145590829|ref|YP_001152831.1| - 0.067 12.8 0.5 0.21 11.2 0.1 2.2 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding PCuAC PF04314.13 gi|145590831|ref|YP_001152833.1| - 1.9e-07 30.9 0.0 2.6e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Copper chaperone PCu(A)C UbiA PF01040.18 gi|145590832|ref|YP_001152834.1| - 4.7e-49 167.0 29.5 6.2e-49 166.6 29.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Cytochrom_D1 PF02239.16 gi|145590833|ref|YP_001152835.1| - 4.5e-31 107.7 0.0 2.9e-28 98.5 0.0 2.7 1 1 0 1 1 1 1 Cytochrome D1 heme domain TAT_signal PF10518.9 gi|145590833|ref|YP_001152835.1| - 0.00046 19.9 1.9 0.00086 19.1 1.9 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Lactonase PF10282.9 gi|145590833|ref|YP_001152835.1| - 0.0008 18.8 0.0 1.9 7.7 0.0 3.1 3 0 0 3 3 3 2 Lactonase, 7-bladed beta-propeller DUF4221 PF13970.6 gi|145590833|ref|YP_001152835.1| - 0.0013 18.4 0.0 0.13 11.8 0.0 3.1 4 1 1 5 5 5 1 Domain of unknown function (DUF4221) PepSY PF03413.19 gi|145590833|ref|YP_001152835.1| - 0.043 14.4 0.2 0.23 12.0 0.0 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Rep_1B PF17873.1 gi|145590834|ref|YP_001152836.1| - 0.26 11.2 5.3 1.4 8.9 0.1 2.6 3 0 0 3 3 3 0 Replicase polyprotein 1ab Hydrolase_3 PF08282.12 gi|145590835|ref|YP_001152837.1| - 1.1e-07 31.8 0.0 0.0016 18.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|145590835|ref|YP_001152837.1| - 6.1e-06 25.5 0.0 8.2e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase S6PP PF05116.13 gi|145590835|ref|YP_001152837.1| - 0.0011 18.5 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|145590835|ref|YP_001152837.1| - 0.003 17.9 0.2 0.16 12.2 0.0 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|145590835|ref|YP_001152837.1| - 0.039 14.0 0.0 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Glycos_transf_1 PF00534.20 gi|145590836|ref|YP_001152838.1| - 6.8e-23 81.1 0.0 1.3e-22 80.1 0.0 1.4 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590836|ref|YP_001152838.1| - 4e-07 30.5 0.0 6.8e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|145590836|ref|YP_001152838.1| - 8.9e-06 26.0 0.0 1.6e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 TM_helix PF05552.12 gi|145590838|ref|YP_001152840.1| - 2.3e-05 24.3 0.7 2.3e-05 24.3 0.7 3.3 4 0 0 4 4 4 1 Conserved TM helix Abhydrolase_9_N PF15420.6 gi|145590838|ref|YP_001152840.1| - 0.51 10.3 14.0 0.04 13.9 7.2 2.2 1 1 1 2 2 2 0 Alpha/beta-hydrolase family N-terminus HHV-5_US34A PF17087.5 gi|145590838|ref|YP_001152840.1| - 1.9 8.7 5.3 1.5 9.0 0.2 2.6 2 0 0 2 2 2 0 Herpesvirus US34A protein family Glycos_transf_1 PF00534.20 gi|145590839|ref|YP_001152841.1| - 1.7e-13 50.5 0.0 4e-13 49.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|145590839|ref|YP_001152841.1| - 1.7e-07 31.5 0.0 1.5e-06 28.5 0.0 2.4 2 1 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145590839|ref|YP_001152841.1| - 4.1e-07 30.5 0.1 8.7e-06 26.2 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|145590839|ref|YP_001152841.1| - 0.0019 18.3 0.2 0.011 15.8 0.2 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|145590839|ref|YP_001152841.1| - 0.0026 18.2 0.1 0.0051 17.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_20 PF00982.21 gi|145590840|ref|YP_001152842.1| - 1.9e-145 485.2 0.0 2.3e-145 484.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase family 20 Trehalose_PPase PF02358.16 gi|145590840|ref|YP_001152842.1| - 6.1e-52 176.1 0.0 8.9e-52 175.5 0.0 1.2 1 0 0 1 1 1 1 Trehalose-phosphatase Hydrolase_3 PF08282.12 gi|145590840|ref|YP_001152842.1| - 1.6e-06 28.1 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|145590840|ref|YP_001152842.1| - 4.6e-06 26.3 0.0 1.4e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Glyco_trans_1_4 PF13692.6 gi|145590840|ref|YP_001152842.1| - 0.015 15.7 0.0 0.059 13.8 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|145590840|ref|YP_001152842.1| - 0.023 14.3 0.0 3.9 7.0 0.0 2.4 2 0 0 2 2 2 0 Glycosyl transferases group 1 MS_channel PF00924.18 gi|145590841|ref|YP_001152843.1| - 4.5e-19 68.8 1.3 4.5e-19 68.8 1.3 2.1 1 1 1 2 2 2 1 Mechanosensitive ion channel Colicin_V PF02674.16 gi|145590841|ref|YP_001152843.1| - 0.28 11.1 18.2 0.36 10.8 11.3 2.2 1 1 1 2 2 2 0 Colicin V production protein Caps_synth_CapC PF14102.6 gi|145590841|ref|YP_001152843.1| - 9.4 6.7 16.5 2.9 8.4 6.6 2.5 2 1 0 2 2 2 0 Capsule biosynthesis CapC DUF5060 PF16586.5 gi|145590842|ref|YP_001152844.1| - 0.12 12.8 0.0 4.9 7.6 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF5060) Sec34 PF04136.15 gi|145590844|ref|YP_001152846.1| - 0.00043 20.2 36.0 0.21 11.5 7.6 5.5 1 1 3 5 5 5 3 Sec34-like family Laminin_II PF06009.12 gi|145590844|ref|YP_001152846.1| - 0.00066 19.7 8.1 0.00066 19.7 8.1 5.3 1 1 6 7 7 7 2 Laminin Domain II Baculo_PEP_C PF04513.12 gi|145590844|ref|YP_001152846.1| - 0.0021 18.1 28.9 0.078 13.0 5.6 5.7 2 1 4 6 6 6 2 Baculovirus polyhedron envelope protein, PEP, C terminus DHR10 PF18595.1 gi|145590844|ref|YP_001152846.1| - 0.0049 16.9 17.3 0.0049 16.9 17.3 5.9 1 1 5 6 6 6 3 Designed helical repeat protein 10 domain Vip3A_N PF12495.8 gi|145590844|ref|YP_001152846.1| - 0.022 14.7 5.9 0.24 11.3 0.2 2.8 2 1 1 3 3 3 0 Vegetative insecticide protein 3A N terminal Spc7 PF08317.11 gi|145590844|ref|YP_001152846.1| - 0.027 13.4 72.1 0.32 9.8 1.7 4.9 1 1 4 5 5 5 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|145590844|ref|YP_001152846.1| - 0.029 14.6 26.0 0.35 11.1 0.5 5.8 3 2 3 6 6 5 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|145590844|ref|YP_001152846.1| - 0.077 13.0 38.2 0.26 11.3 1.5 5.7 1 1 5 6 6 6 0 Protein of unknown function (DUF1664) Occludin_ELL PF07303.13 gi|145590844|ref|YP_001152846.1| - 0.086 13.6 0.6 0.086 13.6 0.6 5.4 1 1 5 7 7 6 0 Occludin homology domain NPV_P10 PF05531.12 gi|145590844|ref|YP_001152846.1| - 0.11 12.9 25.4 0.92 10.0 1.5 5.4 2 1 2 5 5 4 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.21 gi|145590844|ref|YP_001152846.1| - 0.29 11.6 53.3 0.56 10.7 0.9 5.8 1 1 5 6 6 6 0 Spectrin repeat IFT57 PF10498.9 gi|145590844|ref|YP_001152846.1| - 0.46 9.4 41.2 0.028 13.4 0.6 4.6 1 1 3 4 4 4 0 Intra-flagellar transport protein 57 APG17 PF04108.12 gi|145590844|ref|YP_001152846.1| - 0.52 9.4 40.9 2.1 7.4 17.1 3.3 1 1 1 2 2 2 0 Autophagy protein Apg17 MscS_porin PF12795.7 gi|145590844|ref|YP_001152846.1| - 0.53 9.8 66.4 0.33 10.5 1.7 3.5 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain FPP PF05911.11 gi|145590844|ref|YP_001152846.1| - 0.57 8.3 53.2 6.9 4.7 42.8 2.6 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil BLOC1_2 PF10046.9 gi|145590844|ref|YP_001152846.1| - 2.6 8.4 47.3 0.13 12.6 2.3 6.1 1 1 6 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Exonuc_VII_L PF02601.15 gi|145590844|ref|YP_001152846.1| - 2.8 7.4 50.4 1.8e+04 -20.9 50.4 3.4 1 1 0 1 1 0 0 Exonuclease VII, large subunit Mce4_CUP1 PF11887.8 gi|145590844|ref|YP_001152846.1| - 3.4 7.0 13.6 5.9 6.3 0.5 3.3 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative DUF4200 PF13863.6 gi|145590844|ref|YP_001152846.1| - 3.9 7.9 74.8 0.28 11.6 13.2 5.0 1 1 4 5 5 5 0 Domain of unknown function (DUF4200) Mod_r PF07200.13 gi|145590844|ref|YP_001152846.1| - 4.1 7.5 61.9 1.8 8.7 0.7 5.2 1 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein PspA_IM30 PF04012.12 gi|145590844|ref|YP_001152846.1| - 4.1 6.9 77.4 0.089 12.4 20.9 4.4 1 1 3 4 4 4 0 PspA/IM30 family DUF3584 PF12128.8 gi|145590844|ref|YP_001152846.1| - 4.1 4.8 55.0 0.57 7.6 22.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Peptidase_C65 PF10275.9 gi|145590844|ref|YP_001152846.1| - 4.3 6.7 20.7 1.1 8.6 3.1 4.1 2 2 2 4 4 4 0 Peptidase C65 Otubain Filo_VP35 PF02097.15 gi|145590844|ref|YP_001152846.1| - 5.8 5.9 10.7 2.1 7.4 0.6 3.3 2 2 2 4 4 4 0 Filoviridae VP35 Fez1 PF06818.15 gi|145590844|ref|YP_001152846.1| - 6.9 7.1 58.2 9.8 6.6 1.7 3.5 1 1 2 3 3 3 0 Fez1 EzrA PF06160.12 gi|145590844|ref|YP_001152846.1| - 7.6 4.6 51.3 0.69 8.0 0.5 3.9 1 1 2 3 3 3 0 Septation ring formation regulator, EzrA SlyX PF04102.12 gi|145590845|ref|YP_001152847.1| - 0.00057 20.4 5.0 0.0066 17.0 0.1 2.7 1 1 1 2 2 2 1 SlyX Mod_r PF07200.13 gi|145590845|ref|YP_001152847.1| - 0.0029 17.7 2.2 0.0042 17.2 2.2 1.4 1 1 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein MetOD2 PF18548.1 gi|145590845|ref|YP_001152847.1| - 0.011 15.8 0.8 0.017 15.2 0.3 1.6 1 1 0 1 1 1 0 Metanogen output domain 2 DUF2203 PF09969.9 gi|145590845|ref|YP_001152847.1| - 0.013 16.2 2.5 0.018 15.8 2.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) CK2S PF15011.6 gi|145590845|ref|YP_001152847.1| - 0.021 14.7 2.3 0.067 13.1 1.3 2.0 1 1 0 1 1 1 0 Casein Kinase 2 substrate Cnn_1N PF07989.11 gi|145590845|ref|YP_001152847.1| - 0.024 14.8 2.2 0.043 14.0 0.2 2.1 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 FUSC PF04632.12 gi|145590845|ref|YP_001152847.1| - 0.029 12.9 9.3 0.033 12.7 9.3 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family CASP_C PF08172.12 gi|145590845|ref|YP_001152847.1| - 0.042 13.2 1.9 0.11 11.8 1.8 1.7 1 1 0 1 1 1 0 CASP C terminal Fib_alpha PF08702.10 gi|145590845|ref|YP_001152847.1| - 0.043 14.0 0.1 0.054 13.7 0.1 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Nas2_N PF18265.1 gi|145590845|ref|YP_001152847.1| - 0.062 13.2 0.1 0.19 11.7 0.0 1.8 2 1 0 2 2 2 0 Nas2 N_terminal domain DUF4407 PF14362.6 gi|145590845|ref|YP_001152847.1| - 0.065 12.6 6.3 0.065 12.6 6.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2229 PF09989.9 gi|145590845|ref|YP_001152847.1| - 0.069 12.8 2.1 0.077 12.6 2.1 1.1 1 0 0 1 1 1 0 CoA enzyme activase uncharacterised domain (DUF2229) SKA2 PF16740.5 gi|145590845|ref|YP_001152847.1| - 0.078 12.8 4.7 0.087 12.6 1.7 2.0 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 Baculo_PEP_C PF04513.12 gi|145590845|ref|YP_001152847.1| - 0.08 13.0 0.4 0.16 12.0 0.2 1.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Occludin_ELL PF07303.13 gi|145590845|ref|YP_001152847.1| - 0.086 13.6 1.8 0.59 10.9 1.8 2.0 1 1 0 1 1 1 0 Occludin homology domain CENP-Q PF13094.6 gi|145590845|ref|YP_001152847.1| - 0.11 12.6 7.8 0.16 12.2 7.8 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Spc24 PF08286.11 gi|145590845|ref|YP_001152847.1| - 0.24 11.7 3.0 1.4 9.2 3.0 1.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF16 PF01519.16 gi|145590845|ref|YP_001152847.1| - 0.26 11.8 0.8 1.6 9.3 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 CorA PF01544.18 gi|145590845|ref|YP_001152847.1| - 0.27 10.5 1.4 0.29 10.4 1.4 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein PV-1 PF06637.11 gi|145590845|ref|YP_001152847.1| - 0.31 9.8 8.6 0.33 9.7 8.6 1.0 1 0 0 1 1 1 0 PV-1 protein (PLVAP) DUF3138 PF11336.8 gi|145590845|ref|YP_001152847.1| - 0.39 9.3 2.9 0.41 9.2 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Spc7 PF08317.11 gi|145590845|ref|YP_001152847.1| - 0.44 9.4 6.6 0.64 8.8 6.6 1.3 1 1 0 1 1 1 0 Spc7 kinetochore protein Com_YlbF PF06133.11 gi|145590845|ref|YP_001152847.1| - 0.62 10.7 6.6 2.3 8.9 2.8 2.1 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA ZapB PF06005.12 gi|145590845|ref|YP_001152847.1| - 0.89 10.0 10.3 8.5 6.9 10.3 2.2 1 1 0 1 1 1 0 Cell division protein ZapB Hexapep PF00132.24 gi|145590846|ref|YP_001152848.1| - 6.6e-30 101.7 26.7 1.7e-08 33.8 0.2 5.5 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|145590846|ref|YP_001152848.1| - 1.5e-18 66.2 21.0 4.6e-07 29.5 3.5 6.3 6 0 0 6 6 6 5 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|145590846|ref|YP_001152848.1| - 0.6 8.2 1.8 1.1 7.3 1.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4954) AA_permease_2 PF13520.6 gi|145590849|ref|YP_001152851.1| - 1.2e-40 139.7 35.7 1.2e-40 139.7 35.7 1.9 1 1 1 2 2 2 2 Amino acid permease AA_permease PF00324.21 gi|145590849|ref|YP_001152851.1| - 2e-25 89.4 37.4 3.2e-25 88.7 37.4 1.2 1 0 0 1 1 1 1 Amino acid permease HIG_1_N PF04588.13 gi|145590849|ref|YP_001152851.1| - 0.18 12.1 0.2 0.18 12.1 0.2 4.3 6 0 0 6 6 6 0 Hypoxia induced protein conserved region Peptidase_M42 PF05343.14 gi|145590850|ref|YP_001152852.1| - 1.2e-84 283.8 0.0 1.5e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|145590850|ref|YP_001152852.1| - 5.2e-08 32.8 0.1 1.3e-07 31.5 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|145590850|ref|YP_001152852.1| - 2.6e-05 23.2 0.0 0.0048 15.7 0.0 2.2 1 1 1 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Peptidase_M28 PF04389.17 gi|145590850|ref|YP_001152852.1| - 0.00026 20.7 0.0 0.0046 16.7 0.0 2.4 2 1 0 2 2 2 1 Peptidase family M28 PBSX_XtrA PF17356.2 gi|145590850|ref|YP_001152852.1| - 0.17 11.8 0.3 0.6 10.0 0.0 1.9 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA SPA PF08616.10 gi|145590850|ref|YP_001152852.1| - 0.18 11.8 0.0 0.31 11.0 0.0 1.3 1 0 0 1 1 1 0 Stabilization of polarity axis PNP_UDP_1 PF01048.20 gi|145590851|ref|YP_001152853.1| - 9.5e-30 103.6 1.4 1.1e-29 103.3 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily EndIII_4Fe-2S PF10576.9 gi|145590852|ref|YP_001152854.1| - 0.4 11.1 3.6 0.47 10.9 0.1 2.3 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III Lys_export PF03956.13 gi|145590853|ref|YP_001152855.1| - 6e-37 127.0 11.2 6e-37 127.0 11.2 2.0 1 1 1 2 2 2 1 Lysine exporter LysO ABC2_membrane_3 PF12698.7 gi|145590853|ref|YP_001152855.1| - 0.092 11.8 8.0 0.24 10.5 8.0 1.8 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|145590853|ref|YP_001152855.1| - 1.4 7.2 9.6 2.2 6.4 9.6 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) ParD_antitoxin PF03693.14 gi|145590854|ref|YP_001152856.1| - 0.13 12.6 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Flavoprotein PF02441.19 gi|145590855|ref|YP_001152857.1| - 7.4e-25 87.5 0.1 9.2e-25 87.2 0.1 1.0 1 0 0 1 1 1 1 Flavoprotein SIS PF01380.22 gi|145590857|ref|YP_001152859.1| - 2.7e-15 56.4 0.0 4.8e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|145590857|ref|YP_001152859.1| - 3.3e-13 49.8 2.0 9.9e-08 32.1 1.6 2.4 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|145590857|ref|YP_001152859.1| - 0.085 12.7 4.0 3.4 7.5 0.1 2.8 2 1 1 3 3 3 0 PRMT5 arginine-N-methyltransferase LigB PF02900.18 gi|145590857|ref|YP_001152859.1| - 0.1 11.6 0.0 0.19 10.8 0.0 1.5 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AdoMet_dc PF02675.15 gi|145590858|ref|YP_001152860.1| - 2.5e-35 120.9 0.0 2.8e-35 120.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase zf-ribbon_3 PF13248.6 gi|145590860|ref|YP_001152862.1| - 0.00025 20.3 4.4 0.002 17.5 4.5 2.0 1 1 1 2 2 2 2 zinc-ribbon domain Mu-like_Com PF10122.9 gi|145590860|ref|YP_001152862.1| - 0.00031 20.1 1.5 0.21 11.1 0.0 2.2 1 1 1 2 2 2 2 Mu-like prophage protein Com CpXC PF14353.6 gi|145590860|ref|YP_001152862.1| - 0.00058 19.9 0.5 0.15 12.1 0.0 2.0 1 1 1 2 2 2 1 CpXC protein DZR PF12773.7 gi|145590860|ref|YP_001152862.1| - 0.0008 19.4 0.3 0.0011 18.9 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|145590860|ref|YP_001152862.1| - 0.0025 17.7 1.1 0.5 10.3 0.5 2.2 1 1 1 2 2 2 1 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.7 gi|145590860|ref|YP_001152862.1| - 0.0027 17.7 5.1 0.018 15.0 5.7 1.8 1 1 1 2 2 2 2 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145590860|ref|YP_001152862.1| - 0.0027 17.6 0.3 0.0034 17.3 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF1922 PF09082.10 gi|145590860|ref|YP_001152862.1| - 0.0042 17.4 1.0 0.0046 17.2 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1922) zf_UBZ PF18439.1 gi|145590860|ref|YP_001152862.1| - 0.0059 16.2 0.4 0.76 9.4 0.0 2.2 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|145590860|ref|YP_001152862.1| - 0.0062 16.0 1.3 0.015 14.8 1.3 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding DUF1610 PF07754.11 gi|145590860|ref|YP_001152862.1| - 0.0068 16.4 0.5 4 7.5 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-C2HC5 PF06221.13 gi|145590860|ref|YP_001152862.1| - 0.0095 15.9 0.5 0.012 15.6 0.5 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type NOB1_Zn_bind PF08772.11 gi|145590860|ref|YP_001152862.1| - 0.011 15.8 0.7 0.037 14.2 0.7 1.8 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-LITAF-like PF10601.9 gi|145590860|ref|YP_001152862.1| - 0.013 15.7 3.0 0.33 11.2 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|145590860|ref|YP_001152862.1| - 0.015 15.0 7.2 0.2 11.4 7.3 2.1 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.19 gi|145590860|ref|YP_001152862.1| - 0.016 15.2 2.0 0.018 15.1 1.6 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|145590860|ref|YP_001152862.1| - 0.019 14.9 3.0 0.38 10.7 2.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain RPA_interact_C PF14768.6 gi|145590860|ref|YP_001152862.1| - 0.025 15.1 0.2 0.027 15.0 0.2 1.0 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn-ribbon_8 PF09723.10 gi|145590860|ref|YP_001152862.1| - 0.036 14.2 4.8 0.52 10.5 4.9 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|145590860|ref|YP_001152862.1| - 0.036 14.1 0.3 0.036 14.1 0.3 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF3268 PF11672.8 gi|145590860|ref|YP_001152862.1| - 0.042 14.2 0.9 0.58 10.5 0.1 2.0 1 1 1 2 2 2 0 zinc-finger-containing domain zf-C3HC4_3 PF13920.6 gi|145590860|ref|YP_001152862.1| - 0.044 13.7 1.2 0.065 13.1 1.2 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YacG PF03884.14 gi|145590860|ref|YP_001152862.1| - 0.05 13.3 1.9 0.9 9.3 3.1 2.0 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Prok-RING_1 PF14446.6 gi|145590860|ref|YP_001152862.1| - 0.053 13.5 4.1 3.6 7.6 0.9 2.1 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 Ogr_Delta PF04606.12 gi|145590860|ref|YP_001152862.1| - 0.077 13.0 4.7 0.97 9.5 0.8 2.4 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-CHCC PF10276.9 gi|145590860|ref|YP_001152862.1| - 0.079 13.0 3.5 0.11 12.5 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger domain zf-ISL3 PF14690.6 gi|145590860|ref|YP_001152862.1| - 0.081 13.6 6.5 1.9 9.2 0.8 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-tcix PF14952.6 gi|145590860|ref|YP_001152862.1| - 0.082 12.5 2.6 3.5 7.3 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Ribosomal_L37ae PF01780.19 gi|145590860|ref|YP_001152862.1| - 0.083 13.0 2.3 0.12 12.4 2.3 1.4 1 1 0 1 1 1 0 Ribosomal L37ae protein family FYDLN_acid PF09538.10 gi|145590860|ref|YP_001152862.1| - 0.083 13.6 0.9 2 9.1 0.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_6 PF14599.6 gi|145590860|ref|YP_001152862.1| - 0.1 12.6 0.6 0.13 12.2 0.6 1.2 1 0 0 1 1 1 0 Zinc-ribbon UPF0547 PF10571.9 gi|145590860|ref|YP_001152862.1| - 0.12 12.5 3.8 3.9 7.6 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.6 gi|145590860|ref|YP_001152862.1| - 0.13 12.7 3.5 2.8 8.5 0.6 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|145590860|ref|YP_001152862.1| - 0.14 12.6 4.2 1 10.0 0.1 2.2 1 1 1 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_10 PF10058.9 gi|145590860|ref|YP_001152862.1| - 0.15 11.8 1.6 0.37 10.6 1.6 1.7 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Di19 PF05605.12 gi|145590860|ref|YP_001152862.1| - 0.16 12.3 4.6 2.3 8.6 0.5 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-NADH-PPase PF09297.11 gi|145590860|ref|YP_001152862.1| - 0.16 11.7 5.1 0.33 10.6 5.1 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|145590860|ref|YP_001152862.1| - 0.18 11.7 3.5 0.27 11.2 3.5 1.4 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Acetone_carb_G PF08882.11 gi|145590860|ref|YP_001152862.1| - 0.21 11.7 0.4 1.7 8.8 0.4 2.0 1 1 0 1 1 1 0 Acetone carboxylase gamma subunit zf-IS66 PF13005.7 gi|145590860|ref|YP_001152862.1| - 0.29 11.6 4.6 3 8.3 0.3 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.6 gi|145590860|ref|YP_001152862.1| - 0.66 10.1 3.7 4.8 7.4 4.1 1.9 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_9 PF14369.6 gi|145590860|ref|YP_001152862.1| - 1.1 9.6 4.8 15 5.9 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon zf-RING_7 PF02591.15 gi|145590860|ref|YP_001152862.1| - 7.6 6.8 8.3 1.3 9.3 0.3 2.6 2 1 1 3 3 3 0 C4-type zinc ribbon domain Aconitase PF00330.20 gi|145590861|ref|YP_001152863.1| - 3.1e-169 563.9 0.0 3.7e-169 563.6 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|145590861|ref|YP_001152863.1| - 1.2e-35 122.7 0.0 1.9e-35 122.1 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain HTH_38 PF13936.6 gi|145590861|ref|YP_001152863.1| - 0.0057 16.4 0.0 0.094 12.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain TIM PF00121.18 gi|145590863|ref|YP_001152865.1| - 7.1e-11 41.9 0.0 5.8e-10 38.9 0.0 1.9 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|145590863|ref|YP_001152865.1| - 1.2e-05 24.8 0.6 1.2e-05 24.8 0.6 1.9 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|145590863|ref|YP_001152865.1| - 8.8e-05 21.8 0.0 0.00018 20.8 0.0 1.6 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|145590863|ref|YP_001152865.1| - 9.3e-05 22.0 0.1 0.00024 20.7 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein NMO PF03060.15 gi|145590863|ref|YP_001152865.1| - 0.0022 17.4 6.7 0.0069 15.8 6.7 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|145590863|ref|YP_001152865.1| - 0.0069 15.4 1.9 0.0084 15.2 0.3 1.8 2 0 0 2 2 2 1 FMN-dependent dehydrogenase Smr PF01713.21 gi|145590863|ref|YP_001152865.1| - 0.025 14.9 0.3 0.035 14.5 0.3 1.5 1 1 0 1 1 1 0 Smr domain G8 PF10162.9 gi|145590865|ref|YP_001152867.1| - 0.087 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 G8 domain Ribosomal_S6e PF01092.19 gi|145590867|ref|YP_001152869.1| - 3.4e-30 104.6 0.0 4.5e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S6e AsnC_trans_reg PF01037.21 gi|145590868|ref|YP_001152870.1| - 5.9e-15 55.0 0.1 6.5e-15 54.9 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HMA PF00403.26 gi|145590868|ref|YP_001152870.1| - 0.037 14.5 0.2 0.051 14.0 0.2 1.2 1 0 0 1 1 1 0 Heavy-metal-associated domain GTP_EFTU_D4 PF14578.6 gi|145590869|ref|YP_001152871.1| - 2.5e-35 120.2 5.8 2.5e-35 120.2 5.8 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|145590869|ref|YP_001152871.1| - 3.9e-27 95.1 0.0 1.2e-26 93.5 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|145590869|ref|YP_001152871.1| - 1.3e-16 60.7 0.0 2.9e-16 59.5 0.0 1.7 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|145590869|ref|YP_001152871.1| - 8.8e-12 45.3 9.6 2e-08 34.5 0.2 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|145590869|ref|YP_001152871.1| - 6e-05 23.1 0.0 0.00014 21.9 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Roc PF08477.13 gi|145590869|ref|YP_001152871.1| - 0.056 13.7 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase TrkA_C PF02080.21 gi|145590869|ref|YP_001152871.1| - 0.076 12.9 0.2 7 6.6 0.0 3.2 3 0 0 3 3 3 0 TrkA-C domain PduV-EutP PF10662.9 gi|145590869|ref|YP_001152871.1| - 0.14 11.9 0.0 0.42 10.4 0.0 1.8 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PaREP1 PF05942.11 gi|145590871|ref|YP_001152873.1| - 0.012 15.5 0.0 0.013 15.4 0.0 1.0 1 0 0 1 1 1 0 Archaeal PaREP1/PaREP8 family DUF3752 PF12572.8 gi|145590871|ref|YP_001152873.1| - 0.042 14.4 0.1 0.051 14.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3752) Cren7 PF11520.8 gi|145590872|ref|YP_001152874.1| - 1.2e-20 73.1 2.5 1.4e-20 73.0 2.5 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 Apt1 PF10351.9 gi|145590873|ref|YP_001152875.1| - 0.12 11.2 0.2 0.14 11.0 0.2 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain Bcr-Abl_Oligo PF09036.10 gi|145590873|ref|YP_001152875.1| - 0.16 12.0 1.1 0.76 9.8 0.1 2.1 1 1 1 2 2 2 0 Bcr-Abl oncoprotein oligomerisation domain CBS PF00571.28 gi|145590874|ref|YP_001152876.1| - 2.1e-22 79.3 3.2 2.2e-11 44.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain PDH PF02153.17 gi|145590874|ref|YP_001152876.1| - 0.0021 17.1 0.1 0.0033 16.5 0.1 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase GGDEF_2 PF17853.1 gi|145590874|ref|YP_001152876.1| - 0.036 14.3 0.1 0.11 12.8 0.0 1.7 1 1 1 2 2 2 0 GGDEF-like domain Presenilin PF01080.17 gi|145590877|ref|YP_001152879.1| - 0.014 14.2 30.4 0.038 12.8 17.1 2.2 1 1 1 2 2 2 0 Presenilin Translin PF01997.16 gi|145590878|ref|YP_001152880.1| - 2.8e-13 50.3 0.6 6e-12 46.0 0.6 2.1 1 1 0 1 1 1 1 Translin family ABC_tran_CTD PF16326.5 gi|145590878|ref|YP_001152880.1| - 0.062 13.6 0.5 0.062 13.6 0.5 1.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain Amidase PF01425.21 gi|145590879|ref|YP_001152881.1| - 1.9e-81 274.4 3.2 2e-80 271.0 3.2 1.9 1 1 0 1 1 1 1 Amidase Ribonuc_red_lgN PF00317.21 gi|145590879|ref|YP_001152881.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.7 1 1 0 1 1 1 0 Ribonucleotide reductase, all-alpha domain Lactamase_B PF00753.27 gi|145590880|ref|YP_001152882.1| - 1.7e-19 70.6 5.1 4.1e-19 69.4 5.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|145590880|ref|YP_001152882.1| - 8.4e-06 25.8 0.0 1.3e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|145590880|ref|YP_001152882.1| - 0.0001 21.9 0.6 0.00018 21.1 0.6 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Herpes_UL51 PF04540.13 gi|145590880|ref|YP_001152882.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.5 1 0 0 1 1 1 0 Herpesvirus UL51 protein NMT1_3 PF16868.5 gi|145590881|ref|YP_001152883.1| - 2.7e-72 243.6 0.1 3.2e-72 243.4 0.1 1.1 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|145590881|ref|YP_001152883.1| - 2.2e-08 34.0 0.0 3.5e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|145590881|ref|YP_001152883.1| - 1.6e-06 28.3 0.0 2.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like DctM PF06808.12 gi|145590882|ref|YP_001152884.1| - 1.4e-46 159.1 49.1 1.4e-46 159.1 49.1 2.2 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporter, DctM component ATP-synt_8 PF00895.20 gi|145590882|ref|YP_001152884.1| - 0.019 15.4 0.2 0.17 12.3 0.2 2.7 1 0 0 1 1 1 0 ATP synthase protein 8 UL45 PF05473.12 gi|145590882|ref|YP_001152884.1| - 8 6.0 5.4 1.9 8.1 0.1 2.4 2 0 0 2 2 2 0 UL45 protein, carbohydrate-binding C-type lectin-like CoA_transf_3 PF02515.17 gi|145590883|ref|YP_001152885.1| - 2e-120 402.3 0.0 2.3e-120 402.1 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III ABC_tran PF00005.27 gi|145590884|ref|YP_001152886.1| - 1.3e-22 80.8 0.0 1.9e-22 80.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145590884|ref|YP_001152886.1| - 1.8e-13 50.9 0.0 6.3e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145590884|ref|YP_001152886.1| - 6.4e-09 35.6 0.0 0.00019 20.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|145590884|ref|YP_001152886.1| - 6.1e-05 23.5 0.0 0.00014 22.2 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|145590884|ref|YP_001152886.1| - 0.0007 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|145590884|ref|YP_001152886.1| - 0.00081 19.8 0.0 0.0017 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.12 gi|145590884|ref|YP_001152886.1| - 0.0009 19.2 0.2 0.012 15.5 0.1 2.1 2 0 0 2 2 2 1 NACHT domain AAA_25 PF13481.6 gi|145590884|ref|YP_001152886.1| - 0.002 17.7 0.4 0.0087 15.7 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|145590884|ref|YP_001152886.1| - 0.003 17.7 0.1 0.074 13.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|145590884|ref|YP_001152886.1| - 0.0051 17.3 0.0 0.0079 16.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145590884|ref|YP_001152886.1| - 0.0054 16.7 0.3 0.18 11.7 0.2 2.1 2 0 0 2 2 2 1 NTPase AAA_15 PF13175.6 gi|145590884|ref|YP_001152886.1| - 0.0058 16.4 0.0 0.009 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|145590884|ref|YP_001152886.1| - 0.0069 15.8 1.3 0.23 10.8 0.2 2.8 2 1 1 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|145590884|ref|YP_001152886.1| - 0.018 15.3 0.1 0.028 14.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145590884|ref|YP_001152886.1| - 0.024 14.4 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145590884|ref|YP_001152886.1| - 0.025 14.6 0.2 0.15 12.0 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|145590884|ref|YP_001152886.1| - 0.036 13.1 0.1 0.059 12.4 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_28 PF13521.6 gi|145590884|ref|YP_001152886.1| - 0.038 14.2 0.3 0.069 13.4 0.1 1.5 2 0 0 2 2 1 0 AAA domain SRP54 PF00448.22 gi|145590884|ref|YP_001152886.1| - 0.041 13.5 0.2 0.069 12.8 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|145590884|ref|YP_001152886.1| - 0.042 13.6 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|145590884|ref|YP_001152886.1| - 0.046 14.3 0.1 0.071 13.7 0.1 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145590884|ref|YP_001152886.1| - 0.063 12.6 0.1 0.12 11.6 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.19 gi|145590884|ref|YP_001152886.1| - 0.084 12.4 0.3 0.15 11.7 0.3 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|145590884|ref|YP_001152886.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region MobB PF03205.14 gi|145590884|ref|YP_001152886.1| - 0.12 12.3 0.0 0.29 11.0 0.0 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B DLIC PF05783.11 gi|145590884|ref|YP_001152886.1| - 0.18 10.6 0.1 0.27 10.0 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SbcCD_C PF13558.6 gi|145590884|ref|YP_001152886.1| - 0.18 12.0 0.1 3.2 8.1 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.8 gi|145590884|ref|YP_001152886.1| - 0.21 9.1 0.2 0.28 8.6 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.6 gi|145590884|ref|YP_001152886.1| - 0.37 9.4 0.0 0.52 8.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|145590885|ref|YP_001152887.1| - 3.8e-09 36.6 17.2 4.7e-09 36.2 17.2 1.1 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|145590886|ref|YP_001152888.1| - 2.7e-20 73.2 1.8 3.5e-20 72.8 1.8 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|145590886|ref|YP_001152888.1| - 0.00019 21.3 0.1 0.0003 20.6 0.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|145590886|ref|YP_001152888.1| - 0.0021 17.2 0.1 0.0056 15.8 0.1 1.6 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.20 gi|145590886|ref|YP_001152888.1| - 0.0091 15.4 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 LysR substrate binding domain NADHdh PF00146.21 gi|145590887|ref|YP_001152889.1| - 2.4e-73 247.0 22.0 3e-73 246.7 22.0 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|145590888|ref|YP_001152890.1| - 5.4e-16 57.7 11.0 7.7e-08 31.8 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145590888|ref|YP_001152890.1| - 1.3e-11 44.9 4.6 2.1e-11 44.2 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145590888|ref|YP_001152890.1| - 5.1e-11 42.6 18.9 2.7e-08 33.8 9.2 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590888|ref|YP_001152890.1| - 9.8e-11 42.4 5.3 0.0002 22.3 1.3 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|145590888|ref|YP_001152890.1| - 6.3e-10 38.7 13.9 2.2e-05 24.3 3.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145590888|ref|YP_001152890.1| - 2.1e-09 37.4 5.4 4e-05 23.7 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145590888|ref|YP_001152890.1| - 3.5e-07 30.6 0.9 0.011 16.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145590888|ref|YP_001152890.1| - 4.8e-07 29.8 19.5 8.9e-05 22.5 12.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590888|ref|YP_001152890.1| - 7e-07 29.7 2.8 0.017 15.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590888|ref|YP_001152890.1| - 2.2e-06 27.4 15.1 0.00036 20.4 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|145590888|ref|YP_001152890.1| - 3.4e-06 27.1 11.4 0.0059 17.0 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145590888|ref|YP_001152890.1| - 8.1e-05 23.3 15.5 0.035 15.0 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145590888|ref|YP_001152890.1| - 0.005 17.0 10.9 0.028 14.6 1.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|145590888|ref|YP_001152890.1| - 0.014 15.2 1.2 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|145590888|ref|YP_001152890.1| - 0.054 14.2 6.7 1.8 9.4 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145590888|ref|YP_001152890.1| - 0.059 13.9 14.2 0.57 10.8 3.9 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|145590888|ref|YP_001152890.1| - 0.37 11.6 8.5 3.9 8.4 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Oxidored_q3 PF00499.20 gi|145590889|ref|YP_001152891.1| - 5e-06 26.3 20.1 1.2e-05 25.1 20.1 1.6 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Peptidase_U4 PF03419.13 gi|145590889|ref|YP_001152891.1| - 0.68 9.2 14.0 0.72 9.1 14.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Yip1 PF04893.17 gi|145590889|ref|YP_001152891.1| - 4.8 6.9 26.6 8 6.2 26.6 1.4 1 1 0 1 1 1 0 Yip1 domain TMEM208_SND2 PF05620.11 gi|145590889|ref|YP_001152891.1| - 4.8 6.9 6.7 1.5 8.6 2.4 1.9 1 1 1 2 2 2 0 SRP-independent targeting protein 2/TMEM208 Oxidored_q2 PF00420.24 gi|145590890|ref|YP_001152892.1| - 2.9e-13 49.3 11.3 3.7e-13 49.0 11.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2105 PF09878.9 gi|145590890|ref|YP_001152892.1| - 0.076 12.7 7.8 0.086 12.6 7.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2105) BCLP PF12304.8 gi|145590890|ref|YP_001152892.1| - 0.17 11.4 9.0 0.24 10.9 9.0 1.4 1 1 0 1 1 1 0 Beta-casein like protein DUF4418 PF14387.6 gi|145590890|ref|YP_001152892.1| - 7.3 6.8 10.2 1.4 9.2 5.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4418) Proton_antipo_M PF00361.20 gi|145590891|ref|YP_001152893.1| - 1.3e-45 155.8 24.7 3.2e-45 154.6 24.7 1.6 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|145590891|ref|YP_001152893.1| - 0.00033 20.7 0.4 0.00033 20.7 0.4 3.3 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|145590892|ref|YP_001152894.1| - 4.4e-45 154.1 33.7 1.9e-44 152.0 22.3 3.1 3 0 0 3 3 3 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|145590892|ref|YP_001152894.1| - 3.9e-07 30.0 5.4 8.5e-07 29.0 1.8 3.2 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|145590893|ref|YP_001152895.1| - 6.3e-19 68.3 17.6 6.3e-19 68.3 17.6 2.8 2 1 1 3 3 3 2 Proton-conducting membrane transporter Spo7 PF03907.13 gi|145590893|ref|YP_001152895.1| - 0.079 12.4 0.2 0.16 11.5 0.2 1.4 1 0 0 1 1 1 0 Spo7-like protein NDK PF00334.19 gi|145590894|ref|YP_001152896.1| - 2.1e-46 157.3 0.0 4e-26 91.6 0.0 2.0 2 0 0 2 2 2 2 Nucleoside diphosphate kinase ATPase PF06745.13 gi|145590896|ref|YP_001152898.1| - 2.2e-13 50.1 0.0 3.7e-08 33.0 0.0 2.5 2 0 0 2 2 2 2 KaiC AAA PF00004.29 gi|145590896|ref|YP_001152898.1| - 0.00084 19.8 0.0 0.0015 18.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145590896|ref|YP_001152898.1| - 0.0017 18.8 0.0 0.0044 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|145590896|ref|YP_001152898.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145590896|ref|YP_001152898.1| - 0.0019 18.5 0.0 0.0045 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|145590896|ref|YP_001152898.1| - 0.0029 17.6 0.1 0.01 15.8 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|145590896|ref|YP_001152898.1| - 0.0037 16.9 0.0 0.0055 16.3 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|145590896|ref|YP_001152898.1| - 0.0056 16.4 0.2 0.016 15.0 0.2 1.8 1 1 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|145590896|ref|YP_001152898.1| - 0.022 14.2 0.1 0.067 12.6 0.1 1.9 1 1 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|145590896|ref|YP_001152898.1| - 0.023 14.4 0.0 0.092 12.5 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|145590896|ref|YP_001152898.1| - 0.024 14.6 0.0 0.097 12.6 0.0 1.9 1 1 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|145590896|ref|YP_001152898.1| - 0.051 14.0 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase RecA PF00154.21 gi|145590896|ref|YP_001152898.1| - 0.07 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein AAA_30 PF13604.6 gi|145590896|ref|YP_001152898.1| - 0.079 12.7 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|145590896|ref|YP_001152898.1| - 0.082 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SecA_DEAD PF07517.14 gi|145590896|ref|YP_001152898.1| - 0.12 11.7 0.2 3.5 6.8 0.2 2.1 2 0 0 2 2 2 0 SecA DEAD-like domain AAA_7 PF12775.7 gi|145590896|ref|YP_001152898.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|145590896|ref|YP_001152898.1| - 0.15 11.3 0.0 0.38 9.9 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Glycos_transf_2 PF00535.26 gi|145590897|ref|YP_001152899.1| - 8.9e-33 113.5 0.0 1.4e-32 112.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.14 gi|145590897|ref|YP_001152899.1| - 7.7e-18 64.8 11.6 1.2e-17 64.2 11.6 1.3 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.6 gi|145590897|ref|YP_001152899.1| - 1.4e-14 54.6 1.1 2.3e-14 53.8 1.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|145590897|ref|YP_001152899.1| - 4.8e-08 32.8 0.0 7.2e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|145590897|ref|YP_001152899.1| - 0.07 13.7 0.0 0.23 12.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 2 Sacchrp_dh_C PF16653.5 gi|145590898|ref|YP_001152900.1| - 2.5e-22 80.3 0.0 3.1e-22 80.0 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|145590898|ref|YP_001152900.1| - 1.3e-06 28.7 0.0 0.0086 16.3 0.0 2.3 1 1 1 2 2 2 2 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|145590898|ref|YP_001152900.1| - 0.071 13.4 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain tRNA-synt_His PF13393.6 gi|145590899|ref|YP_001152901.1| - 1.9e-65 221.2 0.2 2.3e-65 220.9 0.2 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|145590899|ref|YP_001152901.1| - 1e-11 44.8 0.4 4e-11 42.9 0.1 2.1 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|145590899|ref|YP_001152901.1| - 1.1e-07 32.0 0.0 7.5e-07 29.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|145590899|ref|YP_001152901.1| - 5.4e-05 22.8 0.1 0.0018 17.8 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) Glyco_hydro_70 PF02324.16 gi|145590899|ref|YP_001152901.1| - 0.13 10.4 0.0 0.54 8.4 0.0 1.7 2 0 0 2 2 2 0 Glycosyl hydrolase family 70 AA_kinase PF00696.28 gi|145590900|ref|YP_001152902.1| - 1.5e-35 122.9 0.0 3.6e-35 121.7 0.0 1.6 1 1 0 1 1 1 1 Amino acid kinase family MFS_1 PF07690.16 gi|145590901|ref|YP_001152903.1| - 1.1e-32 113.4 56.6 1.1e-32 113.4 56.6 2.0 1 1 0 1 1 1 1 Major Facilitator Superfamily OATP PF03137.20 gi|145590901|ref|YP_001152903.1| - 4.8e-05 21.9 0.4 4.8e-05 21.9 0.4 2.1 3 0 0 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family SIT PF15330.6 gi|145590904|ref|YP_001152906.1| - 0.0082 16.6 0.0 0.014 15.9 0.0 1.3 1 0 0 1 1 1 1 SHP2-interacting transmembrane adaptor protein, SIT Class_IIIsignal PF04021.12 gi|145590904|ref|YP_001152906.1| - 6.5 6.9 9.0 12 6.0 9.0 1.4 1 0 0 1 1 1 0 Class III signal peptide TatC PF00902.18 gi|145590906|ref|YP_001152908.1| - 2.4e-41 141.9 20.8 2.8e-41 141.6 20.8 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) MttA_Hcf106 PF02416.16 gi|145590907|ref|YP_001152909.1| - 4.3e-16 58.0 4.9 1e-15 56.8 0.6 2.5 2 1 1 3 3 3 1 mttA/Hcf106 family Occludin_ELL PF07303.13 gi|145590907|ref|YP_001152909.1| - 0.003 18.2 0.7 0.0036 18.0 0.7 1.0 1 0 0 1 1 1 1 Occludin homology domain Hom_end PF05204.14 gi|145590907|ref|YP_001152909.1| - 0.0035 17.5 0.2 0.0049 17.0 0.2 1.2 1 0 0 1 1 1 1 Homing endonuclease DUF2465 PF10239.9 gi|145590907|ref|YP_001152909.1| - 0.02 14.1 1.1 0.023 13.9 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2465) ATG22 PF11700.8 gi|145590907|ref|YP_001152909.1| - 0.046 12.4 0.0 0.048 12.3 0.0 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like HHH_8 PF14716.6 gi|145590907|ref|YP_001152909.1| - 0.061 13.7 0.5 0.1 12.9 0.5 1.5 1 1 0 1 1 1 0 Helix-hairpin-helix domain EamA PF00892.20 gi|145590908|ref|YP_001152910.1| - 6.9e-30 104.0 34.6 5.3e-15 55.8 15.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|145590908|ref|YP_001152910.1| - 3.5e-06 27.0 3.4 0.00041 20.4 0.6 2.7 2 1 0 2 2 2 2 Putative transmembrane family 234 RHH_1 PF01402.21 gi|145590909|ref|YP_001152911.1| - 4e-10 39.3 0.0 5.4e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|145590909|ref|YP_001152911.1| - 0.00034 20.8 0.0 0.00034 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|145590909|ref|YP_001152911.1| - 0.016 15.6 0.0 0.018 15.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|145590909|ref|YP_001152911.1| - 0.048 13.6 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB DAO PF01266.24 gi|145590910|ref|YP_001152912.1| - 8.7e-12 45.3 7.3 3.9e-09 36.6 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145590910|ref|YP_001152912.1| - 2.8e-06 26.8 0.0 5.2e-05 22.6 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|145590910|ref|YP_001152912.1| - 0.0019 18.4 0.3 0.0081 16.4 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain PaRep2b PF07775.11 gi|145590911|ref|YP_001152913.1| - 3.3e-110 369.0 13.6 1.6e-73 248.0 3.5 2.0 1 1 1 2 2 2 2 PaRep2b protein Lactamase_B PF00753.27 gi|145590913|ref|YP_001152915.1| - 2.9e-29 102.5 3.4 4.1e-29 102.0 3.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|145590913|ref|YP_001152915.1| - 2.8e-05 23.7 0.0 3.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DRTGG PF07085.12 gi|145590913|ref|YP_001152915.1| - 0.19 11.5 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 DRTGG domain DsbD PF02683.15 gi|145590914|ref|YP_001152916.1| - 3.3e-12 46.8 18.8 2.5e-11 43.9 18.8 2.0 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Thioredoxin_2 PF13098.6 gi|145590914|ref|YP_001152916.1| - 7.5e-06 26.4 0.0 6.4e-05 23.4 0.0 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_7 PF13899.6 gi|145590914|ref|YP_001152916.1| - 0.002 18.3 0.0 0.0044 17.2 0.0 1.6 1 1 0 1 1 1 1 Thioredoxin-like DUF1980 PF09323.10 gi|145590914|ref|YP_001152916.1| - 0.071 13.0 0.1 0.17 11.7 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DSPc PF00782.20 gi|145590915|ref|YP_001152917.1| - 4.3e-12 46.0 0.0 4.9e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|145590915|ref|YP_001152917.1| - 2.1e-05 24.2 0.0 2.6e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.6 gi|145590915|ref|YP_001152917.1| - 2.8e-05 24.3 0.0 4.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.12 gi|145590915|ref|YP_001152917.1| - 0.0016 18.1 0.0 0.0022 17.7 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.6 gi|145590915|ref|YP_001152917.1| - 0.0071 16.3 0.0 0.068 13.1 0.0 2.0 1 1 0 1 1 1 1 Tyrosine phosphatase family DUF3800 PF12686.7 gi|145590916|ref|YP_001152918.1| - 0.00018 22.1 0.0 0.00073 20.2 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) DUF4173 PF13777.6 gi|145590917|ref|YP_001152919.1| - 0.032 13.7 3.2 0.68 9.3 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4173) XS PF03468.14 gi|145590918|ref|YP_001152920.1| - 0.013 15.8 0.0 0.016 15.5 0.0 1.1 1 0 0 1 1 1 0 XS domain HEPN PF05168.14 gi|145590919|ref|YP_001152921.1| - 7e-30 103.6 0.6 8.3e-30 103.3 0.6 1.0 1 0 0 1 1 1 1 HEPN domain DUF1771 PF08590.10 gi|145590919|ref|YP_001152921.1| - 0.091 13.1 2.0 1.2 9.6 1.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1771) GXWXG PF14231.6 gi|145590919|ref|YP_001152921.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 GXWXG protein NTP_transf_2 PF01909.23 gi|145590920|ref|YP_001152922.1| - 0.051 13.9 0.0 0.055 13.8 0.0 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase domain Serpin PF00079.20 gi|145590921|ref|YP_001152923.1| - 9.1e-56 189.8 0.0 1.8e-55 188.8 0.0 1.5 1 1 0 1 1 1 1 Serpin (serine protease inhibitor) DUF4148 PF13663.6 gi|145590921|ref|YP_001152923.1| - 0.15 12.2 1.5 15 5.9 0.5 2.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) DUF1118 PF06549.12 gi|145590922|ref|YP_001152924.1| - 0.077 13.3 0.6 0.1 13.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1118) HTH_45 PF14947.6 gi|145590925|ref|YP_001152927.1| - 1.2e-06 28.4 0.0 1.3e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|145590925|ref|YP_001152927.1| - 0.037 13.8 0.0 0.042 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_Tnp_1 PF01527.20 gi|145590925|ref|YP_001152927.1| - 0.06 13.7 0.1 0.079 13.3 0.1 1.3 1 0 0 1 1 1 0 Transposase YcaO PF02624.16 gi|145590927|ref|YP_001152929.1| - 7.9e-10 38.5 0.0 8.3e-10 38.4 0.0 1.0 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding ABC2_membrane_3 PF12698.7 gi|145590929|ref|YP_001152931.1| - 0.0074 15.4 0.0 0.011 14.9 0.0 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein Romo1 PF10247.9 gi|145590929|ref|YP_001152931.1| - 0.015 15.7 2.9 0.035 14.5 2.9 1.6 1 0 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 Peptidase_U4 PF03419.13 gi|145590929|ref|YP_001152931.1| - 1.5 8.0 4.1 18 4.5 0.3 2.3 1 1 1 2 2 2 0 Sporulation factor SpoIIGA BRI3BP PF14965.6 gi|145590931|ref|YP_001152933.1| - 0.45 10.0 10.8 0.046 13.2 1.2 2.3 2 1 0 2 2 2 0 Negative regulator of p53/TP53 HTH_45 PF14947.6 gi|145590932|ref|YP_001152934.1| - 6.2e-13 48.5 1.9 7.2e-13 48.3 1.9 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix RXLR PF16810.5 gi|145590934|ref|YP_001152936.1| - 0.26 11.7 0.9 0.39 11.2 0.8 1.5 1 1 0 1 1 1 0 RXLR phytopathogen effector protein, Avirulence activity PaREP1 PF05942.11 gi|145590936|ref|YP_001152938.1| - 1.3e-26 92.8 3.4 1.8e-26 92.4 3.4 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|145590936|ref|YP_001152938.1| - 0.0003 20.9 1.2 0.00085 19.4 1.2 1.7 1 1 0 1 1 1 1 HEPN domain Arc PF03869.14 gi|145590936|ref|YP_001152938.1| - 0.0017 18.2 0.1 0.011 15.6 0.0 2.2 2 0 0 2 2 2 1 Arc-like DNA binding domain CopG_antitoxin PF12441.8 gi|145590936|ref|YP_001152938.1| - 0.052 14.1 0.1 0.097 13.2 0.1 1.5 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system DUF5618 PF18498.1 gi|145590936|ref|YP_001152938.1| - 0.061 13.5 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5618) LAGLIDADG_3 PF14528.6 gi|154845015|ref|YP_001425571.1| - 7.9e-11 42.1 0.0 1.5e-10 41.2 0.0 1.5 1 0 0 1 1 1 1 LAGLIDADG-like domain Staphopain_pro PF14731.6 gi|154845015|ref|YP_001425571.1| - 0.012 15.6 0.7 5.3 7.0 0.3 2.4 2 0 0 2 2 2 0 Staphopain proregion HTH_20 PF12840.7 gi|145590939|ref|YP_001152941.1| - 5.5e-07 29.6 0.2 2.4e-06 27.5 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145590939|ref|YP_001152941.1| - 1.1e-06 28.4 0.0 2.1e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|145590939|ref|YP_001152941.1| - 2.3e-05 23.9 0.0 3.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FtsK_gamma PF09397.10 gi|145590939|ref|YP_001152941.1| - 0.01 15.6 0.8 0.019 14.8 0.8 1.4 1 0 0 1 1 1 0 Ftsk gamma domain FaeA PF04703.12 gi|145590939|ref|YP_001152941.1| - 0.013 15.8 0.1 0.061 13.7 0.1 2.0 2 0 0 2 2 2 0 FaeA-like protein TrmB PF01978.19 gi|145590939|ref|YP_001152941.1| - 0.014 15.2 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_41 PF14502.6 gi|145590939|ref|YP_001152941.1| - 0.04 13.6 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|145590939|ref|YP_001152941.1| - 0.067 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_34 PF13601.6 gi|145590939|ref|YP_001152941.1| - 0.085 13.0 0.0 0.26 11.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|145590939|ref|YP_001152941.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|145590939|ref|YP_001152941.1| - 0.12 12.3 0.6 0.2 11.6 0.6 1.3 1 0 0 1 1 1 0 MarR family LexA_DNA_bind PF01726.16 gi|145590939|ref|YP_001152941.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain VIT1 PF01988.19 gi|145590940|ref|YP_001152942.1| - 2.8e-06 27.4 25.3 0.00034 20.6 6.7 2.3 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|145590940|ref|YP_001152942.1| - 0.0001 22.7 1.8 96 3.4 0.0 2.2 1 1 0 1 1 1 0 Rubrerythrin COQ7 PF03232.13 gi|145590940|ref|YP_001152942.1| - 0.1 12.4 0.1 8.6 6.1 0.0 2.4 2 1 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 UbiD PF01977.16 gi|145590941|ref|YP_001152943.1| - 2.1e-132 441.8 0.0 2.7e-132 441.5 0.0 1.1 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DUF4129 PF13559.6 gi|145590941|ref|YP_001152943.1| - 0.056 13.7 3.4 1.2 9.5 3.4 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4129) tRNA-synt_2 PF00152.20 gi|145590943|ref|YP_001152945.1| - 6.5e-75 252.1 0.0 9e-75 251.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|145590943|ref|YP_001152945.1| - 2.8e-09 36.8 0.0 5.8e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|145590943|ref|YP_001152945.1| - 1.6e-05 24.5 0.0 0.065 12.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Glycos_transf_2 PF00535.26 gi|145590944|ref|YP_001152946.1| - 1.7e-20 73.5 0.0 2.6e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|145590944|ref|YP_001152946.1| - 1.6e-17 64.1 7.7 6.8e-17 62.0 7.7 2.2 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|145590944|ref|YP_001152946.1| - 3.6e-15 56.5 0.0 1.5e-14 54.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|145590944|ref|YP_001152946.1| - 1.7e-08 34.1 0.0 3.9e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|145590944|ref|YP_001152946.1| - 0.00011 21.8 0.0 0.005 16.4 0.0 2.3 3 0 0 3 3 3 1 Glycosyltransferase like family 2 TNFR_16_TM PF18422.1 gi|145590944|ref|YP_001152946.1| - 0.039 13.9 0.2 0.039 13.9 0.2 2.1 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain Thy1 PF02511.15 gi|145590945|ref|YP_001152947.1| - 1.5e-38 132.5 0.5 1.9e-38 132.2 0.5 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein Ribosomal_L15e PF00827.17 gi|145590947|ref|YP_001152949.1| - 4.1e-53 180.0 5.5 4.8e-53 179.7 5.5 1.0 1 0 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|145590948|ref|YP_001152950.1| - 1.4e-18 67.3 0.0 2.7e-18 66.4 0.0 1.4 1 1 0 1 1 1 1 RNA binding MFS_1 PF07690.16 gi|145590950|ref|YP_001152952.1| - 3.1e-21 75.7 8.7 3.5e-21 75.5 8.7 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|145590950|ref|YP_001152952.1| - 2e-10 40.2 0.9 2.1e-10 40.1 0.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|145590950|ref|YP_001152952.1| - 0.013 14.3 0.8 0.015 14.1 0.8 1.2 1 0 0 1 1 1 0 MFS_1 like family HEPN PF05168.14 gi|145590953|ref|YP_001152955.1| - 1.8e-25 89.3 0.3 2.1e-25 89.1 0.3 1.1 1 0 0 1 1 1 1 HEPN domain TPR_1 PF00515.28 gi|145590953|ref|YP_001152955.1| - 0.096 12.5 1.5 0.27 11.1 0.2 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|145590953|ref|YP_001152955.1| - 0.15 12.3 0.3 0.15 12.3 0.3 2.0 3 0 0 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|145590954|ref|YP_001152956.1| - 2.7e-14 53.2 0.0 3.6e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145590954|ref|YP_001152956.1| - 4.3e-10 39.5 0.0 6.8e-10 38.9 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|145590954|ref|YP_001152956.1| - 3.3e-05 24.1 0.0 3.7e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm MdcG PF10620.9 gi|145590954|ref|YP_001152956.1| - 0.0098 15.7 0.1 0.069 12.9 0.1 2.1 1 1 0 1 1 1 1 Phosphoribosyl-dephospho-CoA transferase MdcG Trypsin PF00089.26 gi|145590956|ref|YP_001152958.1| - 0.052 13.3 0.0 0.052 13.3 0.0 1.1 1 0 0 1 1 1 0 Trypsin RimK PF08443.11 gi|145590959|ref|YP_001152961.1| - 7.1e-29 100.7 0.0 9.2e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|145590959|ref|YP_001152961.1| - 2.6e-13 49.7 0.0 3.9e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|145590959|ref|YP_001152961.1| - 8.5e-10 38.9 0.0 2.8e-09 37.2 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|145590959|ref|YP_001152961.1| - 0.00035 19.9 0.0 0.43 9.8 0.0 2.1 2 0 0 2 2 2 2 YheC/D like ATP-grasp ATPgrasp_Ter PF15632.6 gi|145590959|ref|YP_001152961.1| - 0.0096 15.7 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon UPF0051 PF01458.17 gi|145590962|ref|YP_001152964.1| - 2e-60 204.2 0.8 7.9e-60 202.2 0.5 1.9 2 0 0 2 2 2 1 Uncharacterized protein family (UPF0051) Methyltransf_23 PF13489.6 gi|145590963|ref|YP_001152965.1| - 3.9e-06 26.8 0.0 6.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145590963|ref|YP_001152965.1| - 6.7e-05 23.5 0.0 0.00012 22.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145590963|ref|YP_001152965.1| - 0.0034 17.2 0.0 0.0057 16.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145590963|ref|YP_001152965.1| - 0.0094 16.7 0.0 0.021 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain TerY_C PF15616.6 gi|145590964|ref|YP_001152966.1| - 0.019 15.1 0.9 0.027 14.6 0.9 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Elf1 PF05129.13 gi|145590964|ref|YP_001152966.1| - 0.038 14.0 1.1 0.057 13.5 1.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.6 gi|145590964|ref|YP_001152966.1| - 0.046 13.1 0.2 0.046 13.1 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|145590964|ref|YP_001152966.1| - 0.055 13.6 0.9 0.11 12.6 0.9 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Mu-like_Com PF10122.9 gi|145590964|ref|YP_001152966.1| - 0.37 10.3 2.9 1.1 8.7 2.9 1.8 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-ZPR1 PF03367.13 gi|145590965|ref|YP_001152967.1| - 5.4e-27 94.6 0.0 6.2e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 ZPR1 zinc-finger domain zf-ribbon_3 PF13248.6 gi|145590965|ref|YP_001152967.1| - 0.022 14.2 2.8 0.14 11.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|145590965|ref|YP_001152967.1| - 0.034 14.3 0.2 1.5 9.1 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_RNApol_7kD PF03604.13 gi|145590965|ref|YP_001152967.1| - 0.041 13.6 2.1 14 5.4 0.1 3.2 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|145590965|ref|YP_001152967.1| - 0.11 12.3 2.9 2.7 7.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|145590965|ref|YP_001152967.1| - 0.11 12.1 5.4 1.7 8.4 1.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain HD_2 PF12917.7 gi|145590966|ref|YP_001152968.1| - 3.2e-09 36.8 0.5 2e-08 34.2 0.5 1.9 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD_3 PF13023.6 gi|145590966|ref|YP_001152968.1| - 7.9e-09 35.6 0.1 1.9e-08 34.4 0.1 1.7 1 1 0 1 1 1 1 HD domain HD PF01966.22 gi|145590966|ref|YP_001152968.1| - 9.8e-06 25.8 0.5 1.5e-05 25.2 0.5 1.3 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|145590966|ref|YP_001152968.1| - 0.035 13.6 0.3 0.051 13.0 0.3 1.3 1 1 0 1 1 1 0 HDOD domain Asparaginase PF00710.20 gi|145590967|ref|YP_001152969.1| - 2.1e-54 184.0 0.3 3.5e-54 183.3 0.3 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|145590967|ref|YP_001152969.1| - 4e-28 97.9 0.2 1.9e-27 95.7 0.0 2.1 2 1 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|145590967|ref|YP_001152969.1| - 1.7e-14 52.8 0.7 3e-14 52.0 0.7 1.4 1 0 0 1 1 1 1 GatD N-terminal domain DUF2064 PF09837.9 gi|145590967|ref|YP_001152969.1| - 0.0079 16.0 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Peptidase_S9 PF00326.21 gi|145590968|ref|YP_001152970.1| - 4.6e-51 173.3 0.0 6.4e-51 172.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|145590968|ref|YP_001152970.1| - 4.3e-10 39.6 0.1 5.1e-08 32.8 0.1 2.3 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) PD40 PF07676.12 gi|145590968|ref|YP_001152970.1| - 7.3e-07 29.0 0.1 0.62 10.1 0.0 3.8 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|145590968|ref|YP_001152970.1| - 2.3e-06 27.4 0.1 1.1e-05 25.2 0.0 2.0 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|145590968|ref|YP_001152970.1| - 0.0028 17.0 0.2 1.3 8.2 0.1 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF2920 PF11144.8 gi|145590968|ref|YP_001152970.1| - 0.0055 15.9 0.0 0.16 11.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) Gmad1 PF10647.9 gi|145590968|ref|YP_001152970.1| - 0.016 15.0 0.1 1.3 8.7 0.0 2.4 1 1 1 2 2 2 0 Lipoprotein LpqB beta-propeller domain AXE1 PF05448.12 gi|145590968|ref|YP_001152970.1| - 0.017 13.8 0.1 0.29 9.8 0.1 2.2 1 1 0 1 1 1 0 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|145590968|ref|YP_001152970.1| - 0.035 13.9 0.0 0.72 9.7 0.0 2.3 1 1 0 1 1 1 0 alpha/beta hydrolase fold TruB_C PF09142.11 gi|145590968|ref|YP_001152970.1| - 0.036 13.9 2.1 47 3.9 0.0 3.8 4 0 0 4 4 4 0 tRNA Pseudouridine synthase II, C terminal DLH PF01738.18 gi|145590968|ref|YP_001152970.1| - 0.041 13.4 0.0 0.14 11.7 0.0 1.8 1 1 0 1 1 1 0 Dienelactone hydrolase family PhoPQ_related PF10142.9 gi|145590968|ref|YP_001152970.1| - 0.049 12.3 0.0 0.078 11.6 0.0 1.2 1 0 0 1 1 1 0 PhoPQ-activated pathogenicity-related protein DPPIV_N PF00930.21 gi|145590968|ref|YP_001152970.1| - 0.068 11.9 0.0 3.7 6.2 0.0 2.5 2 1 1 3 3 3 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S9_N PF02897.15 gi|145590968|ref|YP_001152970.1| - 0.12 11.1 0.0 0.18 10.5 0.0 1.2 1 0 0 1 1 1 0 Prolyl oligopeptidase, N-terminal beta-propeller domain ANAPC4_WD40 PF12894.7 gi|145590968|ref|YP_001152970.1| - 0.18 12.1 0.0 19 5.7 0.0 3.1 3 0 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Wzz PF02706.15 gi|145590969|ref|YP_001152971.1| - 0.04 14.2 2.2 0.057 13.7 2.2 1.2 1 0 0 1 1 1 0 Chain length determinant protein Glyco_hydro_57 PF03065.15 gi|145590970|ref|YP_001152972.1| - 2.3e-57 194.6 0.7 3.4e-57 194.1 0.7 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF3302 PF11742.8 gi|145590970|ref|YP_001152972.1| - 0.0067 16.5 3.6 0.016 15.4 3.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3302) Glyco_hydro_26 PF02156.15 gi|145590970|ref|YP_001152972.1| - 0.096 12.1 1.5 0.21 11.0 1.5 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 26 SRP9-21 PF05486.12 gi|145590971|ref|YP_001152973.1| - 0.14 12.5 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle 9 kDa protein (SRP9) ATPase_2 PF01637.18 gi|145590972|ref|YP_001152974.1| - 2.6e-17 63.5 0.0 1.4e-15 57.8 0.0 2.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|145590972|ref|YP_001152974.1| - 5.7e-09 36.6 0.4 9.3e-08 32.6 0.4 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|145590972|ref|YP_001152974.1| - 1e-07 32.3 0.0 2.2e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|145590972|ref|YP_001152974.1| - 2.6e-07 30.8 0.0 5.4e-07 29.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|145590972|ref|YP_001152974.1| - 1.6e-06 27.8 0.0 3.8e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF234 PF03008.14 gi|145590972|ref|YP_001152974.1| - 3.8e-05 24.1 0.0 0.00013 22.4 0.0 1.9 1 1 0 1 1 1 1 Archaea bacterial proteins of unknown function TrmB PF01978.19 gi|145590972|ref|YP_001152974.1| - 0.002 18.0 0.1 0.0051 16.7 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA PF00004.29 gi|145590972|ref|YP_001152974.1| - 0.0052 17.2 0.0 0.0087 16.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MarR_2 PF12802.7 gi|145590972|ref|YP_001152974.1| - 0.0081 16.0 0.4 0.024 14.5 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|145590972|ref|YP_001152974.1| - 0.032 14.1 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TniB PF05621.11 gi|145590972|ref|YP_001152974.1| - 0.064 12.7 0.0 0.35 10.3 0.0 2.1 3 0 0 3 3 3 0 Bacterial TniB protein TM_helix PF05552.12 gi|145590973|ref|YP_001152975.1| - 6.3e-11 42.1 14.5 2.4e-08 33.8 2.6 5.3 6 0 0 6 6 6 2 Conserved TM helix Jag_N PF14804.6 gi|145590974|ref|YP_001152976.1| - 0.0034 17.7 0.1 1.3 9.4 0.0 2.8 3 0 0 3 3 3 2 Jag N-terminus ARGLU PF15346.6 gi|145590974|ref|YP_001152976.1| - 2.7 7.9 6.5 7.6 6.4 6.5 1.7 1 1 0 1 1 1 0 Arginine and glutamate-rich 1 HAD PF12710.7 gi|145590975|ref|YP_001152977.1| - 1.7e-07 31.8 0.1 2.5e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|145590975|ref|YP_001152977.1| - 2.1e-06 27.9 0.0 5.7e-05 23.3 0.0 2.7 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145590975|ref|YP_001152977.1| - 9.3e-06 26.1 1.1 0.00014 22.2 0.3 2.8 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|145590975|ref|YP_001152977.1| - 0.00033 20.5 0.0 0.013 15.2 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.6 gi|145590975|ref|YP_001152977.1| - 0.016 15.0 0.1 0.044 13.6 0.1 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain SLATT_2 PF18183.1 gi|145590975|ref|YP_001152977.1| - 0.06 13.1 0.4 0.096 12.5 0.4 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 2 Hydrolase_6 PF13344.6 gi|145590975|ref|YP_001152977.1| - 0.21 11.7 0.2 1.1 9.5 0.2 2.1 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase UbiA PF01040.18 gi|145590976|ref|YP_001152978.1| - 7.2e-30 104.1 26.4 9.6e-30 103.7 26.4 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family Glyco_hydro_1 PF00232.18 gi|145590977|ref|YP_001152979.1| - 3.8e-26 91.5 0.3 1.1e-24 86.7 0.1 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_42 PF02449.15 gi|145590977|ref|YP_001152979.1| - 0.00013 21.4 0.0 0.00028 20.4 0.0 1.4 1 0 0 1 1 1 1 Beta-galactosidase Glyco_hydro_35 PF01301.19 gi|145590977|ref|YP_001152979.1| - 0.00067 19.4 0.1 0.0011 18.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Cellulase PF00150.18 gi|145590977|ref|YP_001152979.1| - 0.00083 18.9 0.0 0.054 12.9 0.0 2.1 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) Usp PF00582.26 gi|145590978|ref|YP_001152980.1| - 4.3e-14 53.2 0.1 1.2e-13 51.8 0.1 1.6 1 1 0 1 1 1 1 Universal stress protein family Pilus_CpaD PF09476.10 gi|145590978|ref|YP_001152980.1| - 0.018 14.8 0.0 0.021 14.5 0.0 1.1 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) TIR PF01582.20 gi|145590978|ref|YP_001152980.1| - 0.031 14.1 0.0 0.039 13.8 0.0 1.1 1 0 0 1 1 1 0 TIR domain DUF434 PF04256.12 gi|145590978|ref|YP_001152980.1| - 0.15 11.8 0.4 0.64 9.8 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF434) Gp_dh_C PF02800.20 gi|145590979|ref|YP_001152981.1| - 1.1e-16 60.8 0.0 1.6e-16 60.3 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|145590979|ref|YP_001152981.1| - 4e-09 36.7 0.1 8e-09 35.7 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|145590979|ref|YP_001152981.1| - 0.00066 19.1 2.9 0.0073 15.7 1.0 2.8 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|145590979|ref|YP_001152981.1| - 0.00074 19.8 0.0 0.0029 17.9 0.1 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|145590979|ref|YP_001152981.1| - 0.022 15.0 0.1 0.051 13.8 0.1 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_2 PF03446.15 gi|145590979|ref|YP_001152981.1| - 0.035 14.3 0.3 0.96 9.6 0.3 2.5 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|145590979|ref|YP_001152981.1| - 0.035 14.0 1.7 0.11 12.3 1.7 1.9 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|145590979|ref|YP_001152981.1| - 0.041 14.7 0.0 0.1 13.5 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AdoHcyase_NAD PF00670.21 gi|145590979|ref|YP_001152981.1| - 0.043 13.9 0.3 0.13 12.4 0.3 1.8 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|145590979|ref|YP_001152981.1| - 0.084 13.5 3.3 0.18 12.4 0.8 2.7 2 2 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|145590979|ref|YP_001152981.1| - 0.1 12.8 0.2 1 9.7 0.1 2.5 2 1 0 2 2 2 0 TrkA-N domain DUF2840 PF11000.8 gi|145590979|ref|YP_001152981.1| - 0.2 11.5 0.3 6.2 6.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2840) PIF PF05092.12 gi|145590979|ref|YP_001152981.1| - 0.26 10.0 0.0 0.46 9.1 0.0 1.4 1 0 0 1 1 1 0 Per os infectivity PGK PF00162.19 gi|145590980|ref|YP_001152982.1| - 1.3e-94 317.3 0.1 1.5e-94 317.1 0.1 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF2204 PF09970.9 gi|145590981|ref|YP_001152983.1| - 8.4e-62 208.0 3.7 9.5e-62 207.8 3.7 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) NTP_transf_5 PF14907.6 gi|145590981|ref|YP_001152983.1| - 0.061 12.9 0.2 6.8 6.2 0.0 2.1 1 1 1 2 2 2 0 Uncharacterised nucleotidyltransferase tRNA-Thr_ED PF08915.11 gi|145590982|ref|YP_001152984.1| - 3.7e-41 140.4 0.0 7.1e-41 139.5 0.0 1.5 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|145590982|ref|YP_001152984.1| - 2e-23 82.3 1.4 4.8e-23 81.1 1.4 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|145590982|ref|YP_001152984.1| - 1.5e-20 73.9 0.3 3.4e-20 72.8 0.1 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Phage_ABA_S PF18066.1 gi|145590982|ref|YP_001152984.1| - 0.097 13.4 0.0 32 5.3 0.0 2.8 2 0 0 2 2 2 0 Phage ABA sandwich domain AdoMet_dc PF02675.15 gi|145590983|ref|YP_001152985.1| - 2.8e-35 120.8 0.0 3.2e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|145590983|ref|YP_001152985.1| - 0.00062 19.5 0.0 0.00095 18.9 0.0 1.3 1 0 0 1 1 1 1 Stage VI sporulation protein F fragilysinNterm PF16376.5 gi|145590983|ref|YP_001152985.1| - 0.019 14.7 0.0 0.028 14.2 0.0 1.3 1 1 0 1 1 1 0 N-terminal domain of fragilysin MobB PF03205.14 gi|145590987|ref|YP_001152989.1| - 1.9e-17 63.4 0.1 4.6e-17 62.2 0.1 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_35 PF14516.6 gi|145590987|ref|YP_001152989.1| - 0.00032 19.7 0.0 0.00037 19.4 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain NTPase_1 PF03266.15 gi|145590987|ref|YP_001152989.1| - 0.0013 18.7 0.1 0.002 18.1 0.1 1.3 1 0 0 1 1 1 1 NTPase ATPase_2 PF01637.18 gi|145590987|ref|YP_001152989.1| - 0.004 17.1 0.0 0.0044 17.0 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea MeaB PF03308.16 gi|145590987|ref|YP_001152989.1| - 0.036 13.0 0.0 0.043 12.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase PF06745.13 gi|145590987|ref|YP_001152989.1| - 0.064 12.6 0.0 0.081 12.3 0.0 1.2 1 0 0 1 1 1 0 KaiC CbiA PF01656.23 gi|145590987|ref|YP_001152989.1| - 0.072 13.1 0.0 0.08 13.0 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain LytR_C PF13399.6 gi|145590987|ref|YP_001152989.1| - 0.075 14.0 0.0 0.12 13.4 0.0 1.4 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator AAA_14 PF13173.6 gi|145590987|ref|YP_001152989.1| - 0.16 12.0 0.0 0.2 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain NDK PF00334.19 gi|145590987|ref|YP_001152989.1| - 0.22 11.5 0.0 0.29 11.2 0.0 1.2 1 0 0 1 1 1 0 Nucleoside diphosphate kinase FlgO PF17680.1 gi|145590987|ref|YP_001152989.1| - 0.24 11.1 0.0 0.41 10.4 0.0 1.3 1 0 0 1 1 1 0 FlgO protein PadR PF03551.14 gi|145590988|ref|YP_001152990.1| - 4.6e-08 32.9 0.1 5.9e-08 32.6 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Penicillinase_R PF03965.16 gi|145590988|ref|YP_001152990.1| - 0.034 14.5 0.0 0.04 14.3 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor PaaX PF07848.12 gi|145590988|ref|YP_001152990.1| - 0.051 13.8 0.2 0.085 13.1 0.0 1.5 2 0 0 2 2 2 0 PaaX-like protein Inos-1-P_synth PF01658.17 gi|145590989|ref|YP_001152991.1| - 2.8e-22 79.0 0.0 9.1e-22 77.4 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|145590989|ref|YP_001152991.1| - 0.032 13.6 0.0 0.12 11.8 0.0 1.8 2 0 0 2 2 2 0 Myo-inositol-1-phosphate synthase CCG PF02754.16 gi|145590990|ref|YP_001152992.1| - 6e-27 93.7 0.3 2.3e-12 46.9 0.1 2.6 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|145590990|ref|YP_001152992.1| - 2.4e-11 43.9 4.8 2.4e-11 43.9 4.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145590990|ref|YP_001152992.1| - 3.4e-11 43.1 6.9 3.4e-11 43.1 6.9 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145590990|ref|YP_001152992.1| - 4.2e-08 33.2 9.2 4.7e-08 33.1 7.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145590990|ref|YP_001152992.1| - 1.4e-07 31.9 3.0 1.4e-07 31.9 3.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145590990|ref|YP_001152992.1| - 3.4e-07 31.1 7.8 9.9e-07 29.6 7.8 1.8 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|145590990|ref|YP_001152992.1| - 7.5e-06 26.4 11.1 9.7e-06 26.1 9.1 2.3 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145590990|ref|YP_001152992.1| - 5e-05 23.2 14.0 0.0034 17.4 3.7 2.9 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|145590990|ref|YP_001152992.1| - 8.4e-05 22.2 16.2 0.002 17.8 1.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145590990|ref|YP_001152992.1| - 0.00076 19.6 7.1 0.12 12.5 0.3 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145590990|ref|YP_001152992.1| - 0.031 14.8 18.5 0.078 13.5 1.5 3.1 4 0 0 4 4 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145590990|ref|YP_001152992.1| - 0.11 13.2 4.3 3.7 8.4 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|145590990|ref|YP_001152992.1| - 0.55 11.1 8.9 5.9 7.8 0.2 3.0 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145590990|ref|YP_001152992.1| - 0.74 10.0 20.1 0.29 11.3 4.1 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145590990|ref|YP_001152992.1| - 5.6 7.6 8.4 6 7.5 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|145590990|ref|YP_001152992.1| - 6 7.1 9.2 15 5.8 1.3 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145590990|ref|YP_001152992.1| - 7.9 7.7 26.4 0.26 12.3 5.1 3.2 4 0 0 4 4 3 0 4Fe-4S binding domain Cas_Cas4 PF01930.17 gi|145590991|ref|YP_001152993.1| - 5.6e-18 65.6 1.3 8.7e-18 65.0 1.3 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|145590991|ref|YP_001152993.1| - 2e-09 37.8 4.7 0.0017 18.3 3.7 3.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|145590991|ref|YP_001152993.1| - 2e-05 24.5 0.7 3.2e-05 23.9 0.7 1.4 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) PDDEXK_3 PF13366.6 gi|145590991|ref|YP_001152993.1| - 0.0001 22.6 4.2 0.0023 18.2 0.4 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily GTP_EFTU PF00009.27 gi|145590992|ref|YP_001152994.1| - 3.4e-24 85.5 0.0 1.4e-23 83.5 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|145590992|ref|YP_001152994.1| - 7.5e-08 32.7 0.5 3.5e-07 30.5 0.1 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|145590992|ref|YP_001152994.1| - 0.00039 20.7 0.0 0.00088 19.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain PduV-EutP PF10662.9 gi|145590992|ref|YP_001152994.1| - 0.0008 19.2 0.1 0.76 9.5 0.0 3.1 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|145590992|ref|YP_001152994.1| - 0.001 19.1 0.0 0.0025 17.9 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|145590992|ref|YP_001152994.1| - 0.0023 17.8 0.4 12 5.8 0.0 3.3 3 0 0 3 3 3 2 RsgA GTPase Roc PF08477.13 gi|145590992|ref|YP_001152994.1| - 0.15 12.3 0.0 14 5.9 0.0 2.4 1 1 1 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase HTH_45 PF14947.6 gi|145590994|ref|YP_001152996.1| - 2.6e-13 49.8 0.0 3e-13 49.5 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|145590994|ref|YP_001152996.1| - 0.0023 17.8 0.0 0.0031 17.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|145590994|ref|YP_001152996.1| - 0.0039 16.9 0.0 0.0048 16.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF4194 PF13835.6 gi|145590994|ref|YP_001152996.1| - 0.0092 15.7 0.2 0.011 15.5 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4194) MarR_2 PF12802.7 gi|145590994|ref|YP_001152996.1| - 0.015 15.2 0.1 0.022 14.6 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|145590994|ref|YP_001152996.1| - 0.017 15.6 0.0 0.022 15.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain SelB-wing_2 PF09106.11 gi|145590994|ref|YP_001152996.1| - 0.019 15.1 0.0 0.028 14.6 0.0 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix DUF973 PF06157.11 gi|145590996|ref|YP_001152998.1| - 9.5e-05 21.6 7.5 0.0002 20.5 7.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF350 PF03994.14 gi|145590996|ref|YP_001152998.1| - 0.014 15.5 3.5 0.014 15.5 3.5 3.5 3 2 1 4 4 4 0 Domain of Unknown Function (DUF350) UPF0182 PF03699.13 gi|145590996|ref|YP_001152998.1| - 1.1 7.3 3.4 1.4 7.0 3.4 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF805 PF05656.14 gi|145590996|ref|YP_001152998.1| - 1.7 9.1 7.4 0.36 11.3 2.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF805) H_PPase PF03030.16 gi|145590998|ref|YP_001153000.1| - 6.2e-235 781.8 44.5 7.2e-235 781.5 44.5 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase V_ATPase_I PF01496.19 gi|145590999|ref|YP_001153001.1| - 2.1e-19 69.0 0.6 4.2e-16 58.1 0.0 3.5 4 1 0 4 4 4 2 V-type ATPase 116kDa subunit family UTP15_C PF09384.10 gi|145590999|ref|YP_001153001.1| - 0.02 14.6 0.2 0.053 13.2 0.2 1.7 1 0 0 1 1 1 0 UTP15 C terminal Dynactin_p22 PF07426.11 gi|145590999|ref|YP_001153001.1| - 0.052 13.4 0.2 0.052 13.4 0.2 2.5 2 0 0 2 2 2 0 Dynactin subunit p22 NYD-SP28 PF14772.6 gi|145590999|ref|YP_001153001.1| - 0.13 12.3 2.9 38 4.4 0.0 3.4 3 0 0 3 3 3 0 Sperm tail CCDC-167 PF15188.6 gi|145590999|ref|YP_001153001.1| - 0.33 11.3 6.9 5.3 7.5 0.2 3.8 4 0 0 4 4 4 0 Coiled-coil domain-containing protein 167 ZapB PF06005.12 gi|145590999|ref|YP_001153001.1| - 0.35 11.3 7.1 0.31 11.5 0.4 3.2 3 0 0 3 3 3 0 Cell division protein ZapB Lebercilin PF15619.6 gi|145590999|ref|YP_001153001.1| - 0.44 10.2 4.2 4.7 6.8 0.1 2.9 3 0 0 3 3 3 0 Ciliary protein causing Leber congenital amaurosis disease Tektin PF03148.14 gi|145590999|ref|YP_001153001.1| - 0.97 8.1 4.7 3.7 6.2 0.1 3.3 4 0 0 4 4 4 0 Tektin family BLI1 PF17324.2 gi|145590999|ref|YP_001153001.1| - 1 10.0 3.4 0.71 10.6 0.6 2.2 3 1 0 3 3 2 0 BLOC-1 interactor 1 MscS_porin PF12795.7 gi|145590999|ref|YP_001153001.1| - 2.9 7.4 10.6 17 4.8 0.1 3.5 4 0 0 4 4 4 0 Mechanosensitive ion channel porin domain Prefoldin_2 PF01920.20 gi|145590999|ref|YP_001153001.1| - 3.5 7.6 8.7 41 4.2 0.1 4.3 5 0 0 5 5 4 0 Prefoldin subunit Taxilin PF09728.9 gi|145590999|ref|YP_001153001.1| - 4.1 6.5 6.0 35 3.4 0.1 3.4 4 0 0 4 4 4 0 Myosin-like coiled-coil protein DUF2530 PF10745.9 gi|145590999|ref|YP_001153001.1| - 4.7 7.5 6.9 1.4 9.2 0.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2530) APG6_N PF17675.1 gi|145590999|ref|YP_001153001.1| - 8.7 6.9 15.4 0.65 10.5 0.3 3.6 2 1 0 2 2 1 0 Apg6 coiled-coil region MTHFR PF02219.17 gi|145591000|ref|YP_001153002.1| - 0.0027 17.1 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 Methylenetetrahydrofolate reductase AAA_31 PF13614.6 gi|145591001|ref|YP_001153003.1| - 2.6e-19 69.8 0.0 3.7e-19 69.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|145591001|ref|YP_001153003.1| - 8.5e-11 42.0 0.0 2.1e-10 40.7 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|145591001|ref|YP_001153003.1| - 5.9e-05 22.6 0.1 0.0034 16.9 0.0 2.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|145591001|ref|YP_001153003.1| - 0.00014 21.1 0.8 0.0004 19.7 0.8 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|145591001|ref|YP_001153003.1| - 0.00029 20.4 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|145591001|ref|YP_001153003.1| - 0.00035 20.0 0.1 0.041 13.2 0.0 2.4 1 1 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|145591001|ref|YP_001153003.1| - 0.0018 17.8 0.1 0.0035 16.8 0.1 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase VirC1 PF07015.11 gi|145591001|ref|YP_001153003.1| - 0.012 14.9 0.1 0.023 14.0 0.1 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|145591001|ref|YP_001153003.1| - 0.045 13.5 0.0 0.19 11.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain UPF0086 PF01868.16 gi|145591003|ref|YP_001153005.1| - 3.3e-06 26.9 0.0 3.7e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|145591004|ref|YP_001153006.1| - 3.1e-18 65.5 4.3 4.3e-18 65.0 4.3 1.2 1 0 0 1 1 1 1 Ribosomal L29 protein DUF2299 PF10061.9 gi|145591004|ref|YP_001153006.1| - 0.0019 18.0 0.2 0.002 17.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF5358 PF17311.2 gi|145591004|ref|YP_001153006.1| - 0.0036 17.3 0.4 0.0043 17.1 0.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5358) Rad50_zn_hook PF04423.14 gi|145591004|ref|YP_001153006.1| - 0.026 14.4 0.4 0.061 13.2 0.4 1.7 1 0 0 1 1 1 0 Rad50 zinc hook motif Enkurin PF13864.6 gi|145591004|ref|YP_001153006.1| - 0.059 13.8 2.2 0.063 13.7 2.2 1.3 1 1 0 1 1 1 0 Calmodulin-binding DUF4355 PF14265.6 gi|145591004|ref|YP_001153006.1| - 0.067 13.4 2.4 0.088 13.1 2.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4355) Spectrin_like PF18373.1 gi|145591004|ref|YP_001153006.1| - 0.083 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Spectrin like domain Arg_decarbox_C PF17944.1 gi|145591004|ref|YP_001153006.1| - 0.12 12.9 1.6 0.19 12.3 0.5 1.8 2 1 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension Ribosomal_S3_C PF00189.20 gi|145591005|ref|YP_001153007.1| - 2.3e-21 76.1 1.7 3.7e-21 75.4 1.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|145591005|ref|YP_001153007.1| - 1e-09 38.1 1.0 2e-09 37.1 0.5 1.8 2 0 0 2 2 2 1 KH domain Put_DNA-bind_N PF06971.13 gi|145591005|ref|YP_001153007.1| - 0.036 14.1 0.2 4.9 7.2 0.0 3.2 3 0 0 3 3 3 0 Putative DNA-binding protein N-terminus KH_5 PF13184.6 gi|145591005|ref|YP_001153007.1| - 0.065 13.3 0.2 0.12 12.5 0.2 1.5 1 0 0 1 1 1 0 NusA-like KH domain Ribosomal_L22 PF00237.19 gi|145591006|ref|YP_001153008.1| - 4.9e-23 81.3 0.2 6.2e-23 81.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e DUF1823 PF08853.11 gi|145591006|ref|YP_001153008.1| - 0.0017 18.5 1.6 0.23 11.7 0.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1823) DUF3253 PF11625.8 gi|145591006|ref|YP_001153008.1| - 0.091 13.0 0.1 0.21 11.9 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) TAT_signal PF10518.9 gi|145591007|ref|YP_001153009.1| - 0.69 9.9 4.4 1.6 8.7 4.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ERCC4 PF02732.15 gi|145591008|ref|YP_001153010.1| - 5.3e-18 65.7 0.0 7.5e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|145591008|ref|YP_001153010.1| - 0.0049 17.4 0.0 0.011 16.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|145591008|ref|YP_001153010.1| - 0.029 14.2 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif RE_ApaLI PF09499.10 gi|145591008|ref|YP_001153010.1| - 0.037 13.7 0.0 0.064 13.0 0.0 1.3 1 0 0 1 1 1 0 ApaLI-like restriction endonuclease IMS_HHH PF11798.8 gi|145591008|ref|YP_001153010.1| - 0.069 13.5 0.0 0.18 12.2 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif 5_3_exonuc PF01367.20 gi|145591008|ref|YP_001153010.1| - 0.1 13.2 0.0 0.24 12.0 0.0 1.6 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold OspE PF02471.17 gi|145591008|ref|YP_001153010.1| - 0.16 12.2 0.0 0.27 11.4 0.0 1.3 1 0 0 1 1 1 0 Borrelia outer surface protein E Ribosomal_S17 PF00366.20 gi|145591009|ref|YP_001153011.1| - 1.5e-21 76.3 3.4 1.9e-21 75.9 3.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S19 PF00203.21 gi|145591010|ref|YP_001153012.1| - 8.6e-33 112.1 0.2 1.3e-32 111.5 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 EutB PF06751.11 gi|145591010|ref|YP_001153012.1| - 0.17 10.7 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Ethanolamine ammonia lyase large subunit (EutB) Myb_DNA-bind_7 PF15963.5 gi|145591010|ref|YP_001153012.1| - 0.18 11.7 0.4 0.27 11.1 0.4 1.3 1 0 0 1 1 1 0 Myb DNA-binding like Pyr_redox_2 PF07992.14 gi|145591012|ref|YP_001153014.1| - 4.9e-31 108.0 1.5 6.4e-31 107.7 1.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145591012|ref|YP_001153014.1| - 9.3e-16 57.9 3.0 1.5e-10 40.9 0.6 3.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|145591012|ref|YP_001153014.1| - 4.4e-10 39.7 2.1 6.1e-06 26.0 0.4 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|145591012|ref|YP_001153014.1| - 7.1e-10 38.5 6.7 2.7e-07 30.0 1.7 3.7 1 1 2 4 4 4 2 FAD binding domain GIDA PF01134.22 gi|145591012|ref|YP_001153014.1| - 5.7e-07 28.9 5.2 3.2e-05 23.2 0.7 3.1 2 1 1 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|145591012|ref|YP_001153014.1| - 4.3e-06 26.4 0.2 4.3e-06 26.4 0.2 1.9 3 0 0 3 3 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|145591012|ref|YP_001153014.1| - 1e-05 24.9 0.2 2.5e-05 23.7 0.2 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|145591012|ref|YP_001153014.1| - 2.8e-05 24.3 0.1 5.5e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|145591012|ref|YP_001153014.1| - 3.1e-05 24.5 1.3 0.054 14.0 0.5 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|145591012|ref|YP_001153014.1| - 7e-05 21.7 1.9 0.0029 16.4 0.5 2.3 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|145591012|ref|YP_001153014.1| - 0.004 16.5 0.5 0.025 13.9 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.6 gi|145591012|ref|YP_001153014.1| - 0.0041 17.1 2.8 0.18 11.8 0.1 2.6 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|145591012|ref|YP_001153014.1| - 0.0055 15.8 1.5 0.037 13.1 0.5 2.1 1 1 1 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|145591012|ref|YP_001153014.1| - 0.0078 15.4 0.4 8.2 5.5 0.1 3.0 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|145591012|ref|YP_001153014.1| - 0.024 13.9 0.1 0.06 12.6 0.1 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain RcsD_ABL PF16359.5 gi|145591012|ref|YP_001153014.1| - 0.088 13.0 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 RcsD-ABL domain Gram_pos_anchor PF00746.21 gi|145591013|ref|YP_001153015.1| - 7.1 6.7 14.3 0.78 9.7 6.1 2.3 2 0 0 2 2 2 0 LPXTG cell wall anchor motif MmgE_PrpD PF03972.14 gi|145591016|ref|YP_001153018.1| - 2.1e-140 468.1 0.0 2.6e-140 467.8 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family PEP_mutase PF13714.6 gi|145591017|ref|YP_001153019.1| - 1.3e-58 198.3 1.9 1.5e-58 198.1 1.9 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|145591017|ref|YP_001153019.1| - 5.7e-14 51.5 1.5 8.6e-14 50.9 0.4 1.8 2 1 0 2 2 2 1 Isocitrate lyase family Pantoate_transf PF02548.15 gi|145591017|ref|YP_001153019.1| - 0.34 10.2 3.1 0.52 9.7 1.8 1.8 1 1 1 2 2 2 0 Ketopantoate hydroxymethyltransferase Cob_adeno_trans PF01923.18 gi|145591018|ref|YP_001153020.1| - 1.7e-18 67.3 0.0 2.2e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF2108 PF09881.9 gi|145591018|ref|YP_001153020.1| - 0.043 13.8 0.1 0.089 12.8 0.0 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) Ribosomal_L38e PF01781.18 gi|145591019|ref|YP_001153021.1| - 4.2e-05 23.6 0.1 4.8e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L38e protein family Ribosomal_60s PF00428.19 gi|145591020|ref|YP_001153022.1| - 2.5e-17 63.3 18.3 2.9e-17 63.0 18.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein EF-hand_14 PF17959.1 gi|145591020|ref|YP_001153022.1| - 0.0033 17.7 0.0 0.0047 17.2 0.0 1.2 1 0 0 1 1 1 1 EF-hand domain DUF5010 PF16402.5 gi|145591020|ref|YP_001153022.1| - 0.18 10.6 0.2 0.19 10.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5010) LPD23 PF18838.1 gi|145591020|ref|YP_001153022.1| - 0.59 9.9 2.9 2.1 8.1 0.0 2.2 2 0 0 2 2 2 0 Large polyvalent protein associated domain 23 DUF2208 PF09973.9 gi|145591021|ref|YP_001153023.1| - 1.3e-55 188.6 7.2 1.4e-55 188.4 7.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) S_4TM PF18159.1 gi|145591021|ref|YP_001153023.1| - 0.00018 21.0 1.2 0.00095 18.5 0.1 2.2 1 1 1 2 2 2 1 SMODS-associating 4TM effector domain CbiQ PF02361.16 gi|145591021|ref|YP_001153023.1| - 0.45 10.1 5.9 2.3 7.8 1.0 2.1 2 0 0 2 2 2 0 Cobalt transport protein Fig1 PF12351.8 gi|145591021|ref|YP_001153023.1| - 3.6 7.5 5.1 1 9.2 0.2 2.0 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF1385 PF07136.11 gi|145591021|ref|YP_001153023.1| - 9.8 5.4 8.8 0.81 8.9 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1385) MFS_1 PF07690.16 gi|145591023|ref|YP_001153025.1| - 0.00048 19.2 0.1 0.00053 19.0 0.1 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2254 PF10011.9 gi|145591023|ref|YP_001153025.1| - 0.0018 17.2 0.0 0.002 17.0 0.0 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2254) Phage_holin_3_6 PF07332.11 gi|145591023|ref|YP_001153025.1| - 0.0075 16.3 8.9 0.0075 16.3 8.9 1.4 1 1 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III Tetraspanin PF00335.20 gi|145591023|ref|YP_001153025.1| - 0.04 13.6 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4131 PF13567.6 gi|145591023|ref|YP_001153025.1| - 0.065 12.9 0.1 0.075 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF948 PF06103.11 gi|145591023|ref|YP_001153025.1| - 0.096 13.0 1.2 0.25 11.6 1.2 1.8 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF4574 PF15141.6 gi|145591023|ref|YP_001153025.1| - 0.1 12.6 2.1 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 OATP PF03137.20 gi|145591023|ref|YP_001153025.1| - 0.17 10.1 0.0 0.18 10.0 0.0 1.1 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family T2SSM PF04612.12 gi|145591023|ref|YP_001153025.1| - 0.42 10.7 8.5 0.39 10.8 0.3 2.1 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein M Na_Ca_ex PF01699.24 gi|145591024|ref|YP_001153026.1| - 4.4e-16 59.2 22.6 8.7e-09 35.5 6.2 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DJ-1_PfpI PF01965.24 gi|145591025|ref|YP_001153027.1| - 1.8e-27 96.1 0.0 2.2e-27 95.9 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|145591025|ref|YP_001153027.1| - 0.061 13.1 0.0 0.07 12.9 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferase class-I Ribosomal_S25 PF03297.15 gi|145591026|ref|YP_001153028.1| - 3.3e-19 68.9 5.1 4.1e-19 68.7 5.1 1.1 1 0 0 1 1 1 1 S25 ribosomal protein TrmB PF01978.19 gi|145591026|ref|YP_001153028.1| - 0.00062 19.6 0.2 0.0012 18.7 0.1 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB SpoIIP PF07454.11 gi|145591026|ref|YP_001153028.1| - 0.011 15.2 0.6 0.012 15.0 0.6 1.0 1 0 0 1 1 1 0 Stage II sporulation protein P (SpoIIP) DDRGK PF09756.9 gi|145591026|ref|YP_001153028.1| - 0.035 13.7 9.1 0.15 11.6 9.1 1.7 1 1 0 1 1 1 0 DDRGK domain Rrf2 PF02082.20 gi|145591026|ref|YP_001153028.1| - 0.06 13.7 0.1 0.11 12.8 0.0 1.6 2 0 0 2 2 2 0 Transcriptional regulator HTH_20 PF12840.7 gi|145591027|ref|YP_001153029.1| - 0.006 16.6 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|145591027|ref|YP_001153029.1| - 0.042 13.8 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) FaeA PF04703.12 gi|145591028|ref|YP_001153030.1| - 5.3e-07 29.9 0.2 7.4e-07 29.5 0.2 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_9 PF08221.11 gi|145591028|ref|YP_001153030.1| - 2.7e-05 24.2 0.1 3.8e-05 23.7 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_24 PF13412.6 gi|145591028|ref|YP_001153030.1| - 6.7e-05 22.4 0.3 0.00011 21.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145591028|ref|YP_001153030.1| - 0.00062 19.6 0.2 0.0008 19.2 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Phage_rep_O PF04492.13 gi|145591028|ref|YP_001153030.1| - 0.0025 18.4 0.2 0.0035 17.9 0.2 1.4 1 1 0 1 1 1 1 Bacteriophage replication protein O HTH_DeoR PF08220.12 gi|145591028|ref|YP_001153030.1| - 0.0053 16.5 0.1 0.009 15.7 0.1 1.5 1 1 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR_2 PF12802.7 gi|145591028|ref|YP_001153030.1| - 0.0087 15.9 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|145591028|ref|YP_001153030.1| - 0.012 15.8 0.2 0.023 14.9 0.2 1.5 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_46 PF15977.5 gi|145591028|ref|YP_001153030.1| - 0.018 15.0 0.4 0.049 13.7 0.2 1.7 1 1 0 1 1 1 0 Winged helix-turn-helix DNA binding TrmB PF01978.19 gi|145591028|ref|YP_001153030.1| - 0.02 14.8 0.1 0.041 13.8 0.1 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|145591028|ref|YP_001153030.1| - 0.031 14.2 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_11 PF08279.12 gi|145591028|ref|YP_001153030.1| - 0.034 14.1 0.5 0.047 13.6 0.5 1.2 1 0 0 1 1 1 0 HTH domain PheRS_DBD1 PF18552.1 gi|145591028|ref|YP_001153030.1| - 0.052 13.3 0.1 0.087 12.6 0.1 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 1 HTH_IclR PF09339.10 gi|145591028|ref|YP_001153030.1| - 0.082 12.7 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cdc6_C PF09079.11 gi|145591028|ref|YP_001153030.1| - 0.098 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_27 PF13463.6 gi|145591028|ref|YP_001153030.1| - 0.14 12.6 0.1 0.23 12.0 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain ACP_syn_III_C PF08541.10 gi|145591029|ref|YP_001153031.1| - 7e-13 48.6 0.0 3.3e-12 46.4 0.0 2.0 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Thiolase_N PF00108.23 gi|145591029|ref|YP_001153031.1| - 1.7e-07 30.9 0.2 2.7e-07 30.2 0.2 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain HMG_CoA_synt_C PF08540.10 gi|145591029|ref|YP_001153031.1| - 0.00013 21.7 0.0 0.00051 19.7 0.0 1.8 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|145591029|ref|YP_001153031.1| - 0.0015 18.4 0.2 0.0022 17.9 0.2 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal ACP_syn_III PF08545.10 gi|145591029|ref|YP_001153031.1| - 0.18 11.6 0.6 0.57 10.1 0.1 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|145591029|ref|YP_001153031.1| - 0.2 11.7 0.7 10 6.1 0.0 3.2 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|145591030|ref|YP_001153032.1| - 5.1e-16 58.4 0.3 7.9e-16 57.8 0.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|145591030|ref|YP_001153032.1| - 1.8e-10 40.5 1.7 3.3e-10 39.6 1.7 1.5 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.23 gi|145591031|ref|YP_001153033.1| - 1.3e-13 50.9 0.0 6.2e-13 48.7 0.0 2.1 2 1 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|145591031|ref|YP_001153033.1| - 3e-07 30.1 0.1 6.3e-07 29.1 0.1 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|145591031|ref|YP_001153033.1| - 0.00093 19.0 0.1 1.2 9.0 0.0 2.6 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Dodecin PF07311.12 gi|145591031|ref|YP_001153033.1| - 0.39 11.0 0.1 0.39 11.0 0.1 1.9 2 0 0 2 2 2 0 Dodecin HMG-CoA_red PF00368.18 gi|145591032|ref|YP_001153034.1| - 1.3e-133 445.6 2.1 1.5e-133 445.4 2.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DNA_pol_B PF00136.21 gi|145591034|ref|YP_001153036.1| - 2.3e-47 161.8 0.3 5.1e-47 160.6 0.3 1.5 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|145591034|ref|YP_001153036.1| - 1.9e-29 102.9 0.0 4.9e-29 101.5 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|145591034|ref|YP_001153036.1| - 0.00084 19.1 0.0 0.002 17.9 0.0 1.6 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|145591034|ref|YP_001153036.1| - 0.0017 18.4 0.0 0.0068 16.4 0.0 2.1 1 0 0 1 1 1 1 RNase_H superfamily DUF2286 PF10051.9 gi|145591035|ref|YP_001153037.1| - 1.7e-39 134.7 0.0 1.9e-39 134.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) CDP-OH_P_transf PF01066.21 gi|145591036|ref|YP_001153038.1| - 2.6e-10 40.9 1.2 2.6e-10 40.9 1.2 2.0 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Methyltrn_RNA_2 PF04013.12 gi|145591037|ref|YP_001153039.1| - 7e-07 29.1 0.0 1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Haem_degrading PF03928.14 gi|145591037|ref|YP_001153039.1| - 0.025 14.6 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Haem-degrading Ribosomal_S26e PF01283.19 gi|145591038|ref|YP_001153040.1| - 5.9e-26 91.0 2.8 6.6e-26 90.8 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e zf-RING_7 PF02591.15 gi|145591038|ref|YP_001153040.1| - 0.015 15.5 3.1 0.031 14.5 0.2 2.4 2 1 0 2 2 2 0 C4-type zinc ribbon domain TackOD1 PF18551.1 gi|145591038|ref|YP_001153040.1| - 0.042 13.5 0.0 0.072 12.8 0.0 1.4 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 Sgf11 PF08209.11 gi|145591038|ref|YP_001153040.1| - 0.14 11.7 0.2 0.14 11.7 0.2 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) tRNA-synt_2b PF00587.25 gi|145591039|ref|YP_001153041.1| - 3.3e-25 89.1 0.1 5.2e-25 88.4 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|145591039|ref|YP_001153041.1| - 1e-21 76.9 0.1 2.4e-21 75.7 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|145591039|ref|YP_001153041.1| - 5.5e-08 32.9 0.0 1.1e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal GCD14 PF08704.10 gi|145591040|ref|YP_001153042.1| - 2.3e-29 102.8 0.0 3e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|145591040|ref|YP_001153042.1| - 8.3e-07 29.0 0.0 1.8e-06 27.9 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14_N PF14801.6 gi|145591040|ref|YP_001153042.1| - 3e-06 27.0 0.4 5.7e-06 26.1 0.4 1.4 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_31 PF13847.6 gi|145591040|ref|YP_001153042.1| - 3.8e-06 26.8 0.0 5.4e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|145591040|ref|YP_001153042.1| - 4.1e-05 24.6 0.1 6.9e-05 23.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145591040|ref|YP_001153042.1| - 0.011 16.4 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591040|ref|YP_001153042.1| - 0.013 16.1 0.0 0.026 15.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|145591040|ref|YP_001153042.1| - 0.11 12.6 0.0 0.8 9.8 0.0 1.8 1 1 1 2 2 2 0 FtsJ-like methyltransferase UPF0020 PF01170.18 gi|145591040|ref|YP_001153042.1| - 0.21 11.2 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 TBP PF00352.21 gi|145591042|ref|YP_001153044.1| - 2.4e-61 203.7 0.1 1.3e-29 101.9 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|145591042|ref|YP_001153044.1| - 0.00078 19.5 0.0 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3378) Cobl PF09469.10 gi|145591042|ref|YP_001153044.1| - 0.072 13.4 0.1 0.23 11.7 0.0 1.8 2 0 0 2 2 2 0 Cordon-bleu ubiquitin-like domain Hjc PF01870.18 gi|145591044|ref|YP_001153046.1| - 1e-28 99.1 0.0 1.3e-28 98.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|145591044|ref|YP_001153046.1| - 0.064 12.8 0.0 0.098 12.2 0.0 1.2 1 0 0 1 1 1 0 REase_AHJR-like UPF0102 PF02021.17 gi|145591044|ref|YP_001153046.1| - 0.076 13.3 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 NERD PF08378.11 gi|145591044|ref|YP_001153046.1| - 0.1 13.1 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain DUF4974 PF16344.5 gi|145591045|ref|YP_001153047.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4974) RE_MamI PF09567.10 gi|145591045|ref|YP_001153047.1| - 0.11 12.1 0.0 0.12 12.0 0.0 1.0 1 0 0 1 1 1 0 MamI restriction endonuclease Lactamase_B_3 PF13483.6 gi|145591046|ref|YP_001153048.1| - 2.1e-27 96.0 0.0 2.6e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|145591046|ref|YP_001153048.1| - 6.5e-26 91.1 0.2 7.9e-26 90.8 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591046|ref|YP_001153048.1| - 1.4e-11 44.8 2.4 7.8e-11 42.4 2.4 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Trp_halogenase PF04820.14 gi|145591047|ref|YP_001153049.1| - 2.6e-10 39.8 0.9 0.0051 15.7 0.6 3.0 2 1 1 3 3 3 3 Tryptophan halogenase DAO PF01266.24 gi|145591047|ref|YP_001153049.1| - 6e-09 35.9 5.6 0.0012 18.5 0.1 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|145591047|ref|YP_001153049.1| - 4.7e-07 29.5 5.9 1.5e-06 27.9 5.9 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|145591047|ref|YP_001153049.1| - 1.1e-06 28.0 6.1 0.00022 20.4 2.6 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|145591047|ref|YP_001153049.1| - 1.5e-06 27.7 1.8 0.00025 20.4 0.3 3.1 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|145591047|ref|YP_001153049.1| - 3.5e-06 26.3 0.6 5.8e-06 25.6 0.6 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|145591047|ref|YP_001153049.1| - 6.5e-06 26.3 1.1 1.9e-05 24.8 1.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|145591047|ref|YP_001153049.1| - 1.6e-05 24.3 0.1 4.3e-05 22.9 0.1 1.7 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|145591047|ref|YP_001153049.1| - 0.00012 20.9 0.2 0.00018 20.3 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|145591047|ref|YP_001153049.1| - 0.00066 19.0 0.2 0.00097 18.4 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|145591047|ref|YP_001153049.1| - 0.0055 15.8 0.3 1.3 8.0 0.3 2.3 2 0 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|145591047|ref|YP_001153049.1| - 0.015 15.2 0.3 0.028 14.3 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|145591047|ref|YP_001153049.1| - 0.11 12.2 0.1 0.2 11.3 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Aldolase_II PF00596.21 gi|145591050|ref|YP_001153052.1| - 2e-43 148.5 0.1 2.3e-43 148.3 0.1 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CTP-dep_RFKase PF01982.16 gi|145591051|ref|YP_001153053.1| - 2e-45 153.8 0.0 2.8e-45 153.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF120 MazE_antitoxin PF04014.18 gi|145591051|ref|YP_001153053.1| - 0.00012 21.9 0.6 0.092 12.7 0.2 2.5 2 0 0 2 2 2 2 Antidote-toxin recognition MazE, bacterial antitoxin HTH_29 PF13551.6 gi|145591051|ref|YP_001153053.1| - 0.00013 21.9 0.0 0.00022 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.7 gi|145591051|ref|YP_001153053.1| - 0.003 17.4 0.2 0.0078 16.1 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|145591051|ref|YP_001153053.1| - 0.0038 17.0 0.1 0.0097 15.7 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.6 gi|145591051|ref|YP_001153053.1| - 0.01 15.9 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ANT PF03374.14 gi|145591051|ref|YP_001153053.1| - 0.014 15.7 0.1 2.6 8.4 0.0 2.6 2 1 1 3 3 3 0 Phage antirepressor protein KilAC domain HTH_Crp_2 PF13545.6 gi|145591051|ref|YP_001153053.1| - 0.018 15.0 0.0 0.034 14.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RQC PF09382.10 gi|145591051|ref|YP_001153053.1| - 0.079 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 RQC domain HemN_C PF06969.16 gi|145591051|ref|YP_001153053.1| - 0.12 12.5 0.0 0.43 10.7 0.0 1.9 1 1 0 1 1 1 0 HemN C-terminal domain HTH_1 PF00126.27 gi|145591051|ref|YP_001153053.1| - 0.15 12.0 0.1 0.48 10.4 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF87 PF01935.17 gi|145591052|ref|YP_001153054.1| - 1.7e-19 70.9 0.0 3e-19 70.0 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|145591052|ref|YP_001153054.1| - 2.5e-11 43.2 0.0 1.7e-09 37.1 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|145591052|ref|YP_001153054.1| - 7.8e-06 26.4 0.5 0.00023 21.6 0.5 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.7 gi|145591052|ref|YP_001153054.1| - 2.1e-05 23.6 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain MeaB PF03308.16 gi|145591052|ref|YP_001153054.1| - 0.00014 20.9 0.0 0.00023 20.3 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|145591052|ref|YP_001153054.1| - 0.00022 21.2 0.4 0.23 11.4 0.0 2.2 2 0 0 2 2 2 2 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|145591052|ref|YP_001153054.1| - 0.00048 19.4 0.0 0.00078 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|145591052|ref|YP_001153054.1| - 0.0006 19.3 0.0 0.011 15.2 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|145591052|ref|YP_001153054.1| - 0.00069 19.9 0.1 0.063 13.5 0.1 2.5 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|145591052|ref|YP_001153054.1| - 0.0012 18.9 0.1 0.016 15.3 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase CLP1_P PF16575.5 gi|145591052|ref|YP_001153054.1| - 0.012 15.4 0.0 0.057 13.2 0.0 2.0 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop MobB PF03205.14 gi|145591052|ref|YP_001153054.1| - 0.015 15.2 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.6 gi|145591052|ref|YP_001153054.1| - 0.029 14.7 0.7 5.3 7.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|145591052|ref|YP_001153054.1| - 0.033 13.6 0.1 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein ABC_tran PF00005.27 gi|145591052|ref|YP_001153054.1| - 0.043 14.3 0.0 0.075 13.5 0.0 1.6 1 1 0 1 1 1 0 ABC transporter CbiA PF01656.23 gi|145591052|ref|YP_001153054.1| - 0.044 13.8 0.0 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.29 gi|145591052|ref|YP_001153054.1| - 0.046 14.1 0.1 1.2 9.5 0.0 2.8 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|145591052|ref|YP_001153054.1| - 0.17 12.3 0.0 0.33 11.4 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NurA PF09376.10 gi|145591053|ref|YP_001153055.1| - 7.5e-32 110.9 0.7 1.7e-31 109.8 0.0 1.9 2 1 0 2 2 2 1 NurA domain Acyl-CoA_dh_C PF12806.7 gi|145591053|ref|YP_001153055.1| - 0.094 12.9 0.0 0.8 9.9 0.0 2.4 3 0 0 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like Radical_SAM PF04055.21 gi|145591054|ref|YP_001153056.1| - 1.7e-05 25.3 0.0 4.4e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Radical SAM superfamily ASCH PF04266.14 gi|145591055|ref|YP_001153057.1| - 2.2e-13 50.7 0.0 3.1e-13 50.2 0.0 1.2 1 0 0 1 1 1 1 ASCH domain HTH_1 PF00126.27 gi|145591055|ref|YP_001153057.1| - 0.033 14.1 0.0 0.087 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HEPN PF05168.14 gi|145591056|ref|YP_001153058.1| - 4.1e-33 114.0 0.5 4.6e-33 113.8 0.5 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|145591057|ref|YP_001153059.1| - 3.6e-08 33.6 0.0 4.3e-08 33.3 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591057|ref|YP_001153059.1| - 4.4e-06 26.7 0.0 6.6e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|145591057|ref|YP_001153059.1| - 0.068 13.0 0.0 0.089 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF711 PF05167.12 gi|145591058|ref|YP_001153060.1| - 6.1e-31 107.7 0.0 1.2e-30 106.7 0.0 1.4 2 0 0 2 2 2 1 Uncharacterised ACR (DUF711) AGOG PF09171.10 gi|145591059|ref|YP_001153061.1| - 0.00011 21.6 0.0 0.00017 21.0 0.0 1.2 1 0 0 1 1 1 1 N-glycosylase/DNA lyase EndIII_4Fe-2S PF10576.9 gi|145591059|ref|YP_001153061.1| - 0.36 11.2 5.0 0.53 10.7 5.0 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PTPS PF01242.19 gi|145591060|ref|YP_001153062.1| - 8.4e-07 29.0 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase ThiS PF02597.20 gi|145591061|ref|YP_001153063.1| - 7.5e-21 74.6 0.0 8.4e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|145591061|ref|YP_001153063.1| - 1.2e-06 28.8 0.0 1.2e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS-like PF14453.6 gi|145591061|ref|YP_001153063.1| - 0.0034 17.4 0.2 0.14 12.2 0.0 2.8 2 2 2 4 4 4 1 ThiS-like ubiquitin Flavin_Reduct PF01613.18 gi|145591062|ref|YP_001153064.1| - 3.6e-10 40.1 0.0 4.8e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Flavin reductase like domain Fumerase PF05681.14 gi|145591063|ref|YP_001153065.1| - 1.2e-80 270.8 0.0 1.4e-80 270.7 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) H-K_ATPase_N PF09040.11 gi|145591063|ref|YP_001153065.1| - 0.097 13.1 0.0 0.29 11.6 0.0 1.8 1 0 0 1 1 1 0 Gastric H+/K+-ATPase, N terminal domain Fumerase_C PF05683.12 gi|145591064|ref|YP_001153066.1| - 1.8e-51 174.4 0.1 2.3e-51 174.1 0.1 1.0 1 0 0 1 1 1 1 Fumarase C-terminus PPO1_DWL PF12142.8 gi|145591064|ref|YP_001153066.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Polyphenol oxidase middle domain CDC24_OB3 PF17244.2 gi|145591064|ref|YP_001153066.1| - 0.21 11.3 0.0 0.31 10.7 0.0 1.2 1 0 0 1 1 1 0 Cell division control protein 24, OB domain 3 DEAD PF00270.29 gi|145591065|ref|YP_001153067.1| - 4.1e-32 111.3 0.2 1.4e-31 109.6 0.0 1.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|145591065|ref|YP_001153067.1| - 3.2e-20 72.5 0.0 1.4e-18 67.2 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|145591065|ref|YP_001153067.1| - 5e-14 52.5 0.0 1.9e-13 50.6 0.0 2.0 1 1 0 1 1 1 1 DEAD/H associated ResIII PF04851.15 gi|145591065|ref|YP_001153067.1| - 1.5e-08 34.9 0.0 3.9e-08 33.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|145591065|ref|YP_001153067.1| - 0.00014 22.1 0.0 0.00047 20.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|145591065|ref|YP_001153067.1| - 0.0034 17.7 0.0 0.084 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|145591065|ref|YP_001153067.1| - 0.014 15.0 1.4 0.041 13.5 0.1 2.4 3 0 0 3 3 3 0 AAA domain HypA PF01155.19 gi|145591065|ref|YP_001153067.1| - 0.015 15.3 0.0 0.036 14.1 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SNF2_N PF00176.23 gi|145591065|ref|YP_001153067.1| - 0.02 13.7 0.0 0.034 12.9 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain HEM4 PF02602.15 gi|145591065|ref|YP_001153067.1| - 0.084 12.2 1.1 3.6 6.9 0.1 3.5 3 1 0 3 3 3 0 Uroporphyrinogen-III synthase HemD HHH_5 PF14520.6 gi|145591065|ref|YP_001153067.1| - 0.13 12.9 0.2 1.9 9.1 0.0 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix domain T4SS-DNA_transf PF02534.14 gi|145591065|ref|YP_001153067.1| - 0.23 10.2 0.0 0.38 9.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer NUDIX PF00293.28 gi|145591066|ref|YP_001153068.1| - 1.2e-15 57.7 0.1 1.6e-15 57.3 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain VirB8 PF04335.13 gi|145591067|ref|YP_001153069.1| - 0.53 10.1 2.5 2.7 7.7 2.8 1.9 1 1 1 2 2 2 0 VirB8 protein Oxidored_molyb PF00174.19 gi|145591069|ref|YP_001153071.1| - 2.6e-31 108.5 0.0 3.4e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain adh_short_C2 PF13561.6 gi|145591070|ref|YP_001153072.1| - 2.7e-71 239.8 0.1 3.8e-71 239.4 0.1 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145591070|ref|YP_001153072.1| - 5.8e-56 189.0 0.1 9.1e-56 188.4 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145591070|ref|YP_001153072.1| - 1.5e-12 47.8 0.1 2.5e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|145591070|ref|YP_001153072.1| - 0.00089 18.8 0.6 0.0026 17.3 0.6 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family HTH_24 PF13412.6 gi|145591072|ref|YP_001153074.1| - 3.3e-06 26.6 0.1 6.4e-06 25.6 0.0 1.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145591072|ref|YP_001153074.1| - 4e-05 23.4 0.0 5.5e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|145591072|ref|YP_001153074.1| - 0.00011 22.0 0.2 0.00022 21.1 0.1 1.4 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|145591072|ref|YP_001153074.1| - 0.00039 20.2 0.0 0.00066 19.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|145591072|ref|YP_001153074.1| - 0.0016 18.8 0.1 0.0019 18.5 0.1 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|145591072|ref|YP_001153074.1| - 0.0028 17.7 0.1 0.0089 16.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|145591072|ref|YP_001153074.1| - 0.034 13.9 0.1 0.057 13.2 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Phos_pyr_kin PF08543.12 gi|145591075|ref|YP_001153077.1| - 2.6e-93 311.9 0.1 3.9e-93 311.3 0.1 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|145591075|ref|YP_001153077.1| - 8.8e-58 194.6 0.8 4e-57 192.4 0.2 2.1 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|145591075|ref|YP_001153077.1| - 1.3e-13 50.9 0.1 2e-13 50.3 0.1 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|145591075|ref|YP_001153077.1| - 0.0016 18.0 0.1 0.0024 17.4 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase 5-FTHF_cyc-lig PF01812.20 gi|145591076|ref|YP_001153078.1| - 1.4e-32 113.1 0.0 1.6e-32 112.9 0.0 1.0 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family NfeD PF01957.18 gi|145591077|ref|YP_001153079.1| - 5.5e-16 58.7 0.2 1.8e-15 57.1 0.2 1.9 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding SDH_sah PF01972.16 gi|145591077|ref|YP_001153079.1| - 0.0001 21.4 0.2 0.00015 20.8 0.2 1.2 1 0 0 1 1 1 1 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|145591077|ref|YP_001153079.1| - 0.0005 20.0 0.4 0.0046 16.9 0.4 2.1 1 1 0 1 1 1 1 Clp protease Peptidase_S49 PF01343.18 gi|145591077|ref|YP_001153079.1| - 0.022 14.7 0.4 0.078 12.9 0.3 2.0 2 0 0 2 2 2 0 Peptidase family S49 Cytochrome_B PF00033.19 gi|145591077|ref|YP_001153079.1| - 0.042 13.7 2.9 0.087 12.6 2.9 1.5 1 0 0 1 1 1 0 Cytochrome b/b6/petB DUF4536 PF15055.6 gi|145591077|ref|YP_001153079.1| - 4.9 7.5 6.4 4.6 7.5 0.2 3.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4536) Band_7 PF01145.25 gi|145591078|ref|YP_001153080.1| - 3.1e-33 115.3 16.0 2.6e-32 112.3 16.0 2.0 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|145591078|ref|YP_001153080.1| - 0.052 13.2 0.1 0.1 12.3 0.1 1.5 1 1 0 1 1 1 0 SPFH domain-Band 7 family Flot PF15975.5 gi|145591078|ref|YP_001153080.1| - 2 8.6 15.4 0.33 11.2 7.9 2.3 1 1 1 2 2 2 0 Flotillin Chorismate_bind PF00425.18 gi|145591081|ref|YP_001153083.1| - 8.6e-72 241.8 0.0 1.1e-71 241.4 0.0 1.0 1 0 0 1 1 1 1 chorismate binding enzyme ProSAAS PF07259.12 gi|145591081|ref|YP_001153083.1| - 0.12 12.3 1.1 0.21 11.5 0.2 1.8 2 0 0 2 2 2 0 ProSAAS precursor DUF1646 PF07854.12 gi|145591083|ref|YP_001153085.1| - 8.3e-121 403.6 28.2 1e-120 403.3 28.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1646) PsbT PF01405.17 gi|145591083|ref|YP_001153085.1| - 5 7.0 10.1 2.7 7.9 1.4 3.4 2 0 0 2 2 2 0 Photosystem II reaction centre T protein PaREP1 PF05942.11 gi|145591084|ref|YP_001153086.1| - 2.1e-27 95.3 0.7 3.2e-27 94.7 0.7 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ATPase_2 PF01637.18 gi|145591086|ref|YP_001153088.1| - 3.9e-29 102.2 0.0 6.1e-29 101.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea SieB PF14163.6 gi|145591086|ref|YP_001153088.1| - 0.17 11.4 0.0 0.39 10.2 0.0 1.5 2 0 0 2 2 2 0 Super-infection exclusion protein B EF-hand_5 PF13202.6 gi|145591087|ref|YP_001153089.1| - 0.14 11.7 0.2 0.25 10.9 0.2 1.5 1 0 0 1 1 1 0 EF hand T2SSE PF00437.20 gi|145591088|ref|YP_001153090.1| - 8.9e-42 143.0 0.0 1.1e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|145591088|ref|YP_001153090.1| - 1.4e-07 32.1 0.0 2.2e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|145591088|ref|YP_001153090.1| - 2.8e-05 23.7 0.0 8.4e-05 22.2 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145591088|ref|YP_001153090.1| - 3e-05 24.6 0.0 5.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|145591088|ref|YP_001153090.1| - 0.00038 20.4 0.0 0.00059 19.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|145591088|ref|YP_001153090.1| - 0.00041 20.6 0.0 0.00099 19.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|145591088|ref|YP_001153090.1| - 0.00059 19.5 0.0 0.00095 18.8 0.0 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|145591088|ref|YP_001153090.1| - 0.00083 19.8 0.0 0.0015 18.9 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|145591088|ref|YP_001153090.1| - 0.0011 19.2 0.0 0.0022 18.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|145591088|ref|YP_001153090.1| - 0.0014 18.7 0.0 0.0026 17.8 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|145591088|ref|YP_001153090.1| - 0.0014 18.5 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase GTP_EFTU PF00009.27 gi|145591088|ref|YP_001153090.1| - 0.0026 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_7 PF12775.7 gi|145591088|ref|YP_001153090.1| - 0.004 16.7 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region FtsK_SpoIIIE PF01580.18 gi|145591088|ref|YP_001153090.1| - 0.0053 16.1 0.1 0.018 14.4 0.0 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family Mg_chelatase PF01078.21 gi|145591088|ref|YP_001153090.1| - 0.012 15.0 0.0 0.027 13.9 0.0 1.5 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|145591088|ref|YP_001153090.1| - 0.015 15.0 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|145591088|ref|YP_001153090.1| - 0.021 14.6 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.23 gi|145591088|ref|YP_001153090.1| - 0.022 14.8 0.0 0.069 13.2 0.0 1.7 2 0 0 2 2 2 0 Dynamin family AAA_18 PF13238.6 gi|145591088|ref|YP_001153090.1| - 0.023 15.3 0.0 0.043 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.21 gi|145591088|ref|YP_001153090.1| - 0.024 14.3 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase TrwB_AAD_bind PF10412.9 gi|145591088|ref|YP_001153090.1| - 0.033 13.1 0.0 0.051 12.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_30 PF13604.6 gi|145591088|ref|YP_001153090.1| - 0.036 13.8 0.0 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|145591088|ref|YP_001153090.1| - 0.049 13.4 0.0 0.083 12.7 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase NACHT PF05729.12 gi|145591088|ref|YP_001153090.1| - 0.058 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Roc PF08477.13 gi|145591088|ref|YP_001153090.1| - 0.058 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|145591088|ref|YP_001153090.1| - 0.064 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain Septin PF00735.18 gi|145591088|ref|YP_001153090.1| - 0.066 12.5 0.0 0.094 12.0 0.0 1.2 1 0 0 1 1 1 0 Septin SMC_N PF02463.19 gi|145591088|ref|YP_001153090.1| - 0.066 12.6 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|145591088|ref|YP_001153090.1| - 0.089 13.0 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145591088|ref|YP_001153090.1| - 0.093 12.0 0.0 0.38 10.0 0.0 1.9 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.14 gi|145591088|ref|YP_001153090.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.22 gi|145591088|ref|YP_001153090.1| - 0.14 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PduV-EutP PF10662.9 gi|145591088|ref|YP_001153090.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation ResIII PF04851.15 gi|145591088|ref|YP_001153090.1| - 0.16 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit SRPRB PF09439.10 gi|145591088|ref|YP_001153090.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit MobB PF03205.14 gi|145591088|ref|YP_001153090.1| - 0.16 11.8 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TsaE PF02367.17 gi|145591088|ref|YP_001153090.1| - 0.17 11.9 0.0 0.33 11.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_15 PF13175.6 gi|145591088|ref|YP_001153090.1| - 0.26 11.0 0.0 0.36 10.5 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain SASP PF00269.20 gi|145591088|ref|YP_001153090.1| - 0.26 11.3 1.1 0.52 10.4 1.1 1.5 1 0 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type T2SSF PF00482.23 gi|145591089|ref|YP_001153091.1| - 2.7e-16 59.6 5.0 2.7e-16 59.6 5.0 2.3 3 0 0 3 3 3 1 Type II secretion system (T2SS), protein F ATPase PF06745.13 gi|145591090|ref|YP_001153092.1| - 6.5e-19 68.2 1.4 1.4e-12 47.5 0.0 3.2 2 1 0 2 2 2 2 KaiC AAA_25 PF13481.6 gi|145591090|ref|YP_001153092.1| - 1.2e-13 51.1 0.0 3.3e-07 30.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|145591090|ref|YP_001153092.1| - 4.5e-11 43.2 0.0 3.4e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.6 gi|145591090|ref|YP_001153092.1| - 1.8e-06 27.8 0.6 0.0012 18.6 0.1 3.2 3 1 0 3 3 3 1 AAA domain AAA PF00004.29 gi|145591090|ref|YP_001153092.1| - 4e-06 27.3 0.0 0.01 16.3 0.0 2.6 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) GvpD PF07088.11 gi|145591090|ref|YP_001153092.1| - 4.2e-06 25.7 0.2 0.0096 14.6 0.0 2.9 3 0 0 3 3 3 2 GvpD gas vesicle protein cobW PF02492.19 gi|145591090|ref|YP_001153092.1| - 9.2e-06 25.3 0.5 0.4 10.2 0.0 3.2 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.21 gi|145591090|ref|YP_001153092.1| - 9.3e-06 25.3 0.1 0.005 16.3 0.1 2.5 2 1 0 2 2 2 1 recA bacterial DNA recombination protein ATPase_2 PF01637.18 gi|145591090|ref|YP_001153092.1| - 1.1e-05 25.5 0.2 0.15 12.0 0.0 2.5 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|145591090|ref|YP_001153092.1| - 2.2e-05 24.3 0.3 0.23 11.2 0.1 2.8 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|145591090|ref|YP_001153092.1| - 2.7e-05 24.6 0.1 0.099 13.0 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|145591090|ref|YP_001153092.1| - 4.9e-05 23.4 0.0 0.032 14.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|145591090|ref|YP_001153092.1| - 0.00013 22.2 0.3 0.024 14.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|145591090|ref|YP_001153092.1| - 0.00013 21.2 0.1 0.028 13.6 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain IstB_IS21 PF01695.17 gi|145591090|ref|YP_001153092.1| - 0.00015 21.6 2.7 0.021 14.6 0.3 2.8 3 0 0 3 3 3 1 IstB-like ATP binding protein SRP54 PF00448.22 gi|145591090|ref|YP_001153092.1| - 0.00017 21.3 0.1 0.08 12.6 0.2 2.4 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain NACHT PF05729.12 gi|145591090|ref|YP_001153092.1| - 0.0002 21.4 0.2 0.93 9.4 0.0 2.8 3 0 0 3 3 3 2 NACHT domain DnaB_C PF03796.15 gi|145591090|ref|YP_001153092.1| - 0.0003 20.2 0.1 0.015 14.6 0.1 2.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain NTPase_1 PF03266.15 gi|145591090|ref|YP_001153092.1| - 0.0011 18.8 0.5 1.6 8.6 0.0 3.4 4 0 0 4 4 3 1 NTPase AAA_18 PF13238.6 gi|145591090|ref|YP_001153092.1| - 0.0014 19.1 0.4 0.36 11.4 0.1 3.1 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|145591090|ref|YP_001153092.1| - 0.0016 17.8 0.1 0.64 9.2 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) KdpD PF02702.17 gi|145591090|ref|YP_001153092.1| - 0.0025 17.3 3.0 0.11 12.0 0.1 2.3 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain ATP_bind_1 PF03029.17 gi|145591090|ref|YP_001153092.1| - 0.0027 17.5 0.2 2.3 7.9 0.1 2.3 2 0 0 2 2 2 2 Conserved hypothetical ATP binding protein PhoH PF02562.16 gi|145591090|ref|YP_001153092.1| - 0.0027 17.2 0.3 0.51 9.8 0.1 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_29 PF13555.6 gi|145591090|ref|YP_001153092.1| - 0.0028 17.3 0.1 0.29 10.9 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain ResIII PF04851.15 gi|145591090|ref|YP_001153092.1| - 0.003 17.6 0.3 0.071 13.1 0.1 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit MobB PF03205.14 gi|145591090|ref|YP_001153092.1| - 0.0031 17.4 0.0 0.041 13.8 0.1 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|145591090|ref|YP_001153092.1| - 0.0059 16.7 0.5 0.3 11.1 0.2 2.6 3 0 0 3 3 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_7 PF12775.7 gi|145591090|ref|YP_001153092.1| - 0.0063 16.0 0.1 3.6 7.1 0.0 2.3 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_5 PF07728.14 gi|145591090|ref|YP_001153092.1| - 0.0067 16.4 0.0 2.1 8.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|145591090|ref|YP_001153092.1| - 0.0093 16.0 0.3 6.8 6.7 0.0 2.6 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_19 PF13245.6 gi|145591090|ref|YP_001153092.1| - 0.015 15.7 0.3 0.69 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|145591090|ref|YP_001153092.1| - 0.027 15.0 0.0 0.25 11.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|145591090|ref|YP_001153092.1| - 0.028 14.9 0.1 11 6.6 0.1 2.3 2 0 0 2 2 2 0 ABC transporter RNA_helicase PF00910.22 gi|145591090|ref|YP_001153092.1| - 0.035 14.5 0.1 1.1 9.7 0.0 2.3 2 0 0 2 2 2 0 RNA helicase MeaB PF03308.16 gi|145591090|ref|YP_001153092.1| - 0.035 13.1 0.8 0.22 10.5 0.1 2.4 3 0 0 3 3 3 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Zeta_toxin PF06414.12 gi|145591090|ref|YP_001153092.1| - 0.089 12.1 0.1 9.5 5.4 0.1 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_11 PF13086.6 gi|145591090|ref|YP_001153092.1| - 0.092 12.5 0.0 0.33 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain TK PF00265.18 gi|145591090|ref|YP_001153092.1| - 0.13 12.2 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 Thymidine kinase AAA_17 PF13207.6 gi|145591090|ref|YP_001153092.1| - 0.13 12.7 0.0 0.67 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF835 PF05763.12 gi|145591090|ref|YP_001153092.1| - 0.15 11.8 0.1 0.86 9.3 0.0 2.2 3 0 0 3 3 2 0 Protein of unknown function (DUF835) RuvB_N PF05496.12 gi|145591090|ref|YP_001153092.1| - 0.15 11.8 0.2 0.96 9.2 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Roc PF08477.13 gi|145591090|ref|YP_001153092.1| - 0.17 12.1 0.0 13 6.0 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Suppressor_P21 PF11479.8 gi|145591091|ref|YP_001153093.1| - 0.013 15.6 0.0 0.016 15.4 0.0 1.2 1 0 0 1 1 1 0 RNA silencing suppressor P21 C-terminal domain PaRep2b PF07775.11 gi|145591093|ref|YP_001153095.1| - 5.2e-107 358.5 14.5 1.1e-72 245.2 3.9 2.1 1 1 1 2 2 2 2 PaRep2b protein DUF3799 PF12684.7 gi|145591093|ref|YP_001153095.1| - 0.13 12.0 0.1 0.21 11.3 0.1 1.3 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) Ras PF00071.22 gi|145591095|ref|YP_001153097.1| - 4.4e-07 29.6 0.3 3.6e-06 26.7 0.3 1.9 1 1 0 1 1 1 1 Ras family MMR_HSR1 PF01926.23 gi|145591095|ref|YP_001153097.1| - 0.00051 20.1 0.0 0.00068 19.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|145591095|ref|YP_001153097.1| - 0.0008 19.2 0.0 0.0018 18.0 0.0 1.5 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Arf PF00025.21 gi|145591095|ref|YP_001153097.1| - 0.00083 18.8 0.0 0.0011 18.5 0.0 1.2 1 0 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|145591095|ref|YP_001153097.1| - 0.0037 17.5 0.1 0.022 15.0 0.1 2.0 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|145591095|ref|YP_001153097.1| - 0.037 13.9 0.1 0.062 13.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|145591095|ref|YP_001153097.1| - 0.038 13.7 0.2 0.043 13.5 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145591095|ref|YP_001153097.1| - 0.051 14.0 0.0 0.079 13.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|145591095|ref|YP_001153097.1| - 0.054 13.1 0.2 0.095 12.3 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|145591095|ref|YP_001153097.1| - 0.077 12.6 0.0 0.093 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145591095|ref|YP_001153097.1| - 0.11 12.5 0.1 0.14 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|145591095|ref|YP_001153097.1| - 0.15 12.3 0.2 0.23 11.6 0.2 1.3 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145591095|ref|YP_001153097.1| - 0.16 11.9 1.1 0.25 11.3 0.5 1.6 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.6 gi|145591095|ref|YP_001153097.1| - 0.17 12.1 0.0 0.21 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145591095|ref|YP_001153097.1| - 0.21 11.6 0.2 0.47 10.5 0.1 1.6 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DHHA1 PF02272.19 gi|145591097|ref|YP_001153099.1| - 1.4e-11 45.0 0.0 3e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|145591097|ref|YP_001153099.1| - 7.6e-06 26.1 0.0 1.9e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 DHH family tRNA_anti-codon PF01336.25 gi|145591097|ref|YP_001153099.1| - 0.14 12.1 1.0 0.7 9.9 0.1 2.2 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Peptidase_S49 PF01343.18 gi|145591098|ref|YP_001153100.1| - 3.5e-19 69.3 1.4 6.9e-11 42.3 1.0 2.2 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|145591098|ref|YP_001153100.1| - 1.5e-12 47.8 0.2 2.4e-10 40.6 0.1 2.2 2 0 0 2 2 2 2 Clp protease SDH_sah PF01972.16 gi|145591098|ref|YP_001153100.1| - 0.0038 16.3 0.1 0.0062 15.6 0.1 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase DUF4350 PF14258.6 gi|145591098|ref|YP_001153100.1| - 0.0052 17.2 0.8 0.031 14.7 0.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ECH_1 PF00378.20 gi|145591098|ref|YP_001153100.1| - 0.018 14.3 0.5 5.4 6.2 0.1 2.2 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase DUF126 PF01989.16 gi|145591098|ref|YP_001153100.1| - 0.022 14.5 0.0 0.3 10.9 0.0 2.4 2 0 0 2 2 2 0 Aconitase X swivel domain Trypsin_2 PF13365.6 gi|145591099|ref|YP_001153101.1| - 7.9e-23 82.0 0.3 1.1e-22 81.5 0.3 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|145591099|ref|YP_001153101.1| - 2.9e-11 43.6 0.0 5.5e-11 42.7 0.0 1.4 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|145591099|ref|YP_001153101.1| - 6.8e-10 38.7 0.1 3.6e-09 36.3 0.1 2.2 2 0 0 2 2 2 1 PDZ domain PDZ_2 PF13180.6 gi|145591099|ref|YP_001153101.1| - 2.2e-09 37.5 0.0 5.5e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|145591099|ref|YP_001153101.1| - 1e-07 32.2 0.0 3.1e-07 30.6 0.0 1.8 2 0 0 2 2 2 1 PDZ domain Tricorn_PDZ PF14685.6 gi|145591099|ref|YP_001153101.1| - 0.031 14.2 0.1 0.15 12.0 0.1 2.2 1 1 1 2 2 2 0 Tricorn protease PDZ domain Peptidase_S29 PF02907.15 gi|145591099|ref|YP_001153101.1| - 0.097 12.4 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease Peptidase_S46 PF10459.9 gi|145591099|ref|YP_001153101.1| - 0.11 11.1 0.1 0.16 10.6 0.1 1.1 1 0 0 1 1 1 0 Peptidase S46 Cupin_2 PF07883.11 gi|145591100|ref|YP_001153102.1| - 7.7e-14 51.2 0.1 1.1e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|145591100|ref|YP_001153102.1| - 2.3e-09 37.3 0.0 3.1e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|145591100|ref|YP_001153102.1| - 4.6e-05 23.0 0.1 8.3e-05 22.2 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|145591100|ref|YP_001153102.1| - 7.1e-05 22.5 0.0 9.8e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Cupin EutQ PF06249.12 gi|145591100|ref|YP_001153102.1| - 9.8e-05 22.2 0.0 0.00011 22.0 0.0 1.1 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ PCO_ADO PF07847.12 gi|145591100|ref|YP_001153102.1| - 0.00054 19.5 0.0 0.28 10.6 0.0 2.0 1 1 1 2 2 2 2 PCO_ADO Cupin_7 PF12973.7 gi|145591100|ref|YP_001153102.1| - 0.0011 18.8 0.0 0.0015 18.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain ARD PF03079.14 gi|145591100|ref|YP_001153102.1| - 0.0015 18.7 0.0 0.0021 18.3 0.0 1.2 1 0 0 1 1 1 1 ARD/ARD' family DMSP_lyase PF16867.5 gi|145591100|ref|YP_001153102.1| - 0.0036 16.9 0.0 0.0048 16.5 0.0 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase AraC_binding_2 PF14525.6 gi|145591100|ref|YP_001153102.1| - 0.0094 15.7 0.1 0.01 15.5 0.1 1.2 1 0 0 1 1 1 1 AraC-binding-like domain DUF4863 PF16155.5 gi|145591100|ref|YP_001153102.1| - 0.012 15.5 0.0 0.014 15.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4863) CENP-C_C PF11699.8 gi|145591100|ref|YP_001153102.1| - 0.014 15.6 0.0 0.026 14.7 0.0 1.4 1 1 1 2 2 2 0 Mif2/CENP-C like Cupin_6 PF12852.7 gi|145591100|ref|YP_001153102.1| - 0.039 13.7 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Cupin HTH_42 PF06224.12 gi|145591101|ref|YP_001153103.1| - 0.0062 16.1 0.1 0.0068 16.0 0.1 1.0 1 0 0 1 1 1 1 Winged helix DNA-binding domain EutK_C PF16365.5 gi|145591101|ref|YP_001153103.1| - 0.019 15.0 0.1 0.042 13.9 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilization protein EutK C-terminus DUF2250 PF10007.9 gi|145591101|ref|YP_001153103.1| - 0.14 12.3 0.0 0.17 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Peptidase_M20 PF01546.28 gi|145591102|ref|YP_001153104.1| - 5.3e-25 88.3 0.0 8.5e-25 87.7 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|145591102|ref|YP_001153104.1| - 3.9e-11 42.8 0.0 7.3e-11 42.0 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|145591102|ref|YP_001153104.1| - 0.0039 16.9 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 ATPase PF06745.13 gi|145591103|ref|YP_001153105.1| - 2.4e-12 46.7 0.1 1.3e-07 31.3 0.0 3.4 2 1 0 2 2 2 2 KaiC GvpD PF07088.11 gi|145591103|ref|YP_001153105.1| - 7e-05 21.6 0.3 0.078 11.6 0.1 3.1 2 1 0 2 2 2 2 GvpD gas vesicle protein RecA PF00154.21 gi|145591103|ref|YP_001153105.1| - 7.1e-05 22.4 0.0 0.21 11.0 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein AAA_17 PF13207.6 gi|145591103|ref|YP_001153105.1| - 0.00075 19.9 0.0 0.0014 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591103|ref|YP_001153105.1| - 0.0011 19.3 0.0 0.0019 18.6 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.9 gi|145591103|ref|YP_001153105.1| - 0.0048 16.2 0.0 0.0071 15.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|145591103|ref|YP_001153105.1| - 0.01 16.1 0.0 0.031 14.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145591103|ref|YP_001153105.1| - 0.014 15.8 0.0 0.025 15.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|145591103|ref|YP_001153105.1| - 0.014 15.7 0.1 0.083 13.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|145591103|ref|YP_001153105.1| - 0.029 14.1 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145591103|ref|YP_001153105.1| - 0.035 13.7 5.5 0.82 9.2 0.6 3.5 2 2 1 3 3 3 0 AAA domain Rad51 PF08423.11 gi|145591103|ref|YP_001153105.1| - 0.048 12.9 0.0 0.076 12.3 0.0 1.3 1 0 0 1 1 1 0 Rad51 AAA_30 PF13604.6 gi|145591103|ref|YP_001153105.1| - 0.067 12.9 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|145591103|ref|YP_001153105.1| - 0.16 12.1 0.0 0.46 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.12 gi|145591106|ref|YP_001153108.1| - 4.1e-08 33.8 0.0 6.7e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591106|ref|YP_001153108.1| - 0.0023 18.6 0.0 0.0042 17.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591106|ref|YP_001153108.1| - 0.088 12.6 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain NTPase_I-T PF01931.18 gi|145591107|ref|YP_001153109.1| - 2.4e-44 151.0 0.0 2.7e-44 150.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 PaREP1 PF05942.11 gi|145591108|ref|YP_001153110.1| - 8.6e-27 93.3 0.7 1.1e-26 93.0 0.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1877 PF08974.10 gi|145591108|ref|YP_001153110.1| - 0.00014 22.0 0.0 0.00052 20.2 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF1877) HEPN PF05168.14 gi|145591108|ref|YP_001153110.1| - 0.018 15.1 1.7 0.99 9.6 1.7 2.2 1 1 0 1 1 1 0 HEPN domain PqqD PF05402.12 gi|145591108|ref|YP_001153110.1| - 0.057 13.7 0.0 3.2 8.1 0.0 2.5 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) PaREP1 PF05942.11 gi|145591109|ref|YP_001153111.1| - 6.5e-32 109.9 8.3 9.9e-32 109.3 8.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TPR_19 PF14559.6 gi|145591109|ref|YP_001153111.1| - 0.41 11.2 5.2 0.4 11.2 3.1 1.9 2 0 0 2 2 2 0 Tetratricopeptide repeat HEPN PF05168.14 gi|145591109|ref|YP_001153111.1| - 0.63 10.2 5.6 4.1 7.6 5.6 2.3 1 1 0 1 1 1 0 HEPN domain HSBP1 PF06825.12 gi|145591111|ref|YP_001153113.1| - 2.9e-10 39.8 23.4 0.012 15.5 0.4 6.0 1 1 4 5 5 5 4 Heat shock factor binding protein 1 Mer2 PF09074.10 gi|145591111|ref|YP_001153113.1| - 9.2e-08 32.1 4.8 1.1e-07 31.8 4.8 1.0 1 0 0 1 1 1 1 Mer2 Apolipoprotein PF01442.18 gi|145591111|ref|YP_001153113.1| - 1.5e-07 31.5 7.2 1.7e-07 31.3 7.2 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF948 PF06103.11 gi|145591111|ref|YP_001153113.1| - 3.3e-07 30.5 8.0 0.00061 20.0 4.4 3.3 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) ApoLp-III PF07464.11 gi|145591111|ref|YP_001153113.1| - 4.9e-07 29.9 1.8 6.6e-07 29.5 1.8 1.2 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) MscS_porin PF12795.7 gi|145591111|ref|YP_001153113.1| - 8.8e-07 28.7 6.1 1e-06 28.5 6.1 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|145591111|ref|YP_001153113.1| - 9.9e-07 28.8 9.6 0.0029 17.7 1.2 2.8 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|145591111|ref|YP_001153113.1| - 1.6e-06 28.5 9.1 0.024 15.1 0.5 3.2 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|145591111|ref|YP_001153113.1| - 2e-06 26.8 5.7 2.2e-06 26.7 5.7 1.0 1 0 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.12 gi|145591111|ref|YP_001153113.1| - 4.1e-06 26.9 7.5 0.002 18.2 4.3 2.1 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus KxDL PF10241.9 gi|145591111|ref|YP_001153113.1| - 5.4e-06 26.6 7.9 0.015 15.6 0.6 3.0 1 1 2 3 3 3 1 Uncharacterized conserved protein CdvA PF18822.1 gi|145591111|ref|YP_001153113.1| - 2.6e-05 24.0 12.3 0.0006 19.6 3.2 2.6 1 1 1 2 2 2 1 CdvA-like coiled-coil domain DUF4407 PF14362.6 gi|145591111|ref|YP_001153113.1| - 6.3e-05 22.5 5.3 8e-05 22.1 5.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|145591111|ref|YP_001153113.1| - 9e-05 22.2 4.4 0.00011 21.9 4.4 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit RmuC PF02646.16 gi|145591111|ref|YP_001153113.1| - 0.00011 21.4 5.0 0.0055 15.9 0.7 2.6 1 1 2 3 3 3 1 RmuC family Phage_Mu_Gam PF07352.12 gi|145591111|ref|YP_001153113.1| - 0.00015 21.7 6.6 0.0022 17.9 2.2 2.4 1 1 1 2 2 2 2 Bacteriophage Mu Gam like protein MCPsignal PF00015.21 gi|145591111|ref|YP_001153113.1| - 0.00016 21.6 3.5 0.0019 18.0 1.1 2.1 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|145591111|ref|YP_001153113.1| - 0.00017 21.6 7.6 0.022 14.7 5.0 2.7 1 1 1 2 2 2 1 Laminin Domain II XhlA PF10779.9 gi|145591111|ref|YP_001153113.1| - 0.00018 21.7 18.0 0.15 12.3 2.9 3.2 1 1 2 3 3 3 2 Haemolysin XhlA ABC_tran_CTD PF16326.5 gi|145591111|ref|YP_001153113.1| - 0.0002 21.5 4.4 0.0024 18.1 0.5 2.8 1 1 1 2 2 2 1 ABC transporter C-terminal domain Nup54 PF13874.6 gi|145591111|ref|YP_001153113.1| - 0.00021 21.4 5.6 0.00025 21.2 4.9 1.6 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 FliD_C PF07195.12 gi|145591111|ref|YP_001153113.1| - 0.00024 20.6 6.7 0.014 14.8 3.3 2.6 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Prominin PF05478.11 gi|145591111|ref|YP_001153113.1| - 0.00028 19.0 6.4 0.00043 18.4 6.0 1.5 1 1 1 2 2 2 1 Prominin BLOC1_2 PF10046.9 gi|145591111|ref|YP_001153113.1| - 0.0003 21.0 7.1 0.16 12.3 1.4 2.7 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.16 gi|145591111|ref|YP_001153113.1| - 0.00032 21.1 9.3 0.0071 16.8 2.1 2.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 DUF2333 PF10095.9 gi|145591111|ref|YP_001153113.1| - 0.00032 19.8 1.9 0.00098 18.2 1.9 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2333) Prefoldin_2 PF01920.20 gi|145591111|ref|YP_001153113.1| - 0.00033 20.6 6.4 1.6 8.7 3.3 3.4 1 1 1 2 2 2 0 Prefoldin subunit Mt_ATP-synt_D PF05873.12 gi|145591111|ref|YP_001153113.1| - 0.00037 20.4 1.8 0.0068 16.3 0.8 2.4 1 1 1 2 2 2 1 ATP synthase D chain, mitochondrial (ATP5H) Tho2 PF11262.8 gi|145591111|ref|YP_001153113.1| - 0.00049 19.4 2.8 0.00063 19.0 2.8 1.2 1 0 0 1 1 1 1 Transcription factor/nuclear export subunit protein 2 Fib_alpha PF08702.10 gi|145591111|ref|YP_001153113.1| - 0.00051 20.2 10.9 0.018 15.2 5.9 2.1 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family T3SSipB PF16535.5 gi|145591111|ref|YP_001153113.1| - 0.00052 20.5 0.3 0.13 12.7 0.2 2.2 1 1 1 2 2 2 1 Type III cell invasion protein SipB Med9 PF07544.13 gi|145591111|ref|YP_001153113.1| - 0.00068 19.7 9.9 0.0098 16.0 3.1 2.6 1 1 1 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 Tektin PF03148.14 gi|145591111|ref|YP_001153113.1| - 0.00081 18.3 12.8 0.0019 17.0 9.4 2.2 1 1 1 2 2 2 2 Tektin family TssO PF17561.2 gi|145591111|ref|YP_001153113.1| - 0.00083 19.5 5.8 0.14 12.3 2.3 2.3 1 1 1 2 2 2 1 Type VI secretion system, TssO Filament PF00038.21 gi|145591111|ref|YP_001153113.1| - 0.0009 18.9 6.2 0.0009 18.9 6.2 1.4 1 1 0 1 1 1 1 Intermediate filament protein Occludin_ELL PF07303.13 gi|145591111|ref|YP_001153113.1| - 0.00097 19.8 3.6 0.92 10.3 0.1 2.5 1 1 1 2 2 2 0 Occludin homology domain Snapin_Pallidin PF14712.6 gi|145591111|ref|YP_001153113.1| - 0.0011 19.3 8.7 0.064 13.7 4.2 2.7 1 1 1 2 2 2 2 Snapin/Pallidin DUF3450 PF11932.8 gi|145591111|ref|YP_001153113.1| - 0.0012 18.2 8.8 0.0055 16.0 3.6 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) TMF_TATA_bd PF12325.8 gi|145591111|ref|YP_001153113.1| - 0.0013 18.9 9.3 0.025 14.8 3.8 2.3 1 1 1 2 2 2 1 TATA element modulatory factor 1 TATA binding TMPIT PF07851.13 gi|145591111|ref|YP_001153113.1| - 0.0013 18.0 2.5 0.016 14.5 1.0 1.8 1 1 1 2 2 2 1 TMPIT-like protein V_ATPase_I PF01496.19 gi|145591111|ref|YP_001153113.1| - 0.0016 16.5 7.0 0.0033 15.4 6.4 1.6 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF3782 PF12644.7 gi|145591111|ref|YP_001153113.1| - 0.0017 18.4 4.9 0.32 11.2 4.5 2.7 1 1 1 2 2 1 1 Protein of unknown function (DUF3782) DUF2203 PF09969.9 gi|145591111|ref|YP_001153113.1| - 0.0019 18.9 6.2 0.074 13.8 1.8 2.1 1 1 1 2 2 2 2 Uncharacterized conserved protein (DUF2203) GAS PF13851.6 gi|145591111|ref|YP_001153113.1| - 0.002 17.5 5.4 0.002 17.5 5.4 1.5 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|145591111|ref|YP_001153113.1| - 0.002 18.3 11.2 0.0049 17.1 6.9 2.1 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain HSCB_C PF07743.13 gi|145591111|ref|YP_001153113.1| - 0.0021 18.5 12.9 67 4.1 12.8 3.2 1 1 0 1 1 1 0 HSCB C-terminal oligomerisation domain SF-assemblin PF06705.11 gi|145591111|ref|YP_001153113.1| - 0.0024 17.2 14.2 0.0034 16.8 13.0 1.6 1 1 1 2 2 2 1 SF-assemblin/beta giardin HMMR_N PF15905.5 gi|145591111|ref|YP_001153113.1| - 0.0024 17.4 6.1 0.0029 17.1 6.1 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal SKA2 PF16740.5 gi|145591111|ref|YP_001153113.1| - 0.0027 17.5 3.4 0.14 12.0 0.2 2.3 1 1 1 2 2 2 1 Spindle and kinetochore-associated protein 2 Alanine_zipper PF11839.8 gi|145591111|ref|YP_001153113.1| - 0.0027 18.0 3.2 3 8.3 3.2 3.4 1 1 0 1 1 1 0 Alanine-zipper, major outer membrane lipoprotein EzrA PF06160.12 gi|145591111|ref|YP_001153113.1| - 0.0029 15.9 10.0 0.0085 14.3 10.1 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA DUF3584 PF12128.8 gi|145591111|ref|YP_001153113.1| - 0.003 15.2 6.0 0.0039 14.8 6.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) DUF4455 PF14643.6 gi|145591111|ref|YP_001153113.1| - 0.0032 16.2 3.8 0.0042 15.8 3.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) TACC_C PF05010.14 gi|145591111|ref|YP_001153113.1| - 0.0035 17.2 5.7 0.046 13.5 4.8 2.2 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Transcrip_act PF04949.13 gi|145591111|ref|YP_001153113.1| - 0.0035 17.2 11.4 0.21 11.5 9.0 2.5 1 1 1 2 2 2 2 Transcriptional activator DUF812 PF05667.11 gi|145591111|ref|YP_001153113.1| - 0.0036 16.3 8.0 0.012 14.5 4.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF812) Fzo_mitofusin PF04799.13 gi|145591111|ref|YP_001153113.1| - 0.0038 16.8 5.9 0.15 11.6 2.7 2.7 1 1 0 2 2 2 1 fzo-like conserved region DHR10 PF18595.1 gi|145591111|ref|YP_001153113.1| - 0.0039 17.2 10.6 0.036 14.1 0.6 2.8 1 1 2 3 3 3 1 Designed helical repeat protein 10 domain Zw10 PF06248.13 gi|145591111|ref|YP_001153113.1| - 0.0039 15.8 3.4 0.0062 15.2 3.3 1.4 1 1 1 2 2 2 1 Centromere/kinetochore Zw10 FapA PF03961.13 gi|145591111|ref|YP_001153113.1| - 0.0039 15.9 6.6 0.0043 15.7 5.9 1.4 1 1 0 1 1 1 1 Flagellar Assembly Protein A Mod_r PF07200.13 gi|145591111|ref|YP_001153113.1| - 0.0041 17.2 2.8 0.013 15.6 2.7 1.9 1 1 0 1 1 1 1 Modifier of rudimentary (Mod(r)) protein PhaP_Bmeg PF09602.10 gi|145591111|ref|YP_001153113.1| - 0.0043 17.0 3.4 0.011 15.7 3.4 1.7 1 1 0 1 1 1 1 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF148 PF02520.17 gi|145591111|ref|YP_001153113.1| - 0.0044 17.1 5.7 0.06 13.5 2.5 2.3 1 1 1 2 2 2 2 Domain of unknown function DUF148 HR1 PF02185.16 gi|145591111|ref|YP_001153113.1| - 0.0044 17.1 9.5 0.72 10.0 0.9 4.0 1 1 4 5 5 4 1 Hr1 repeat FlxA PF14282.6 gi|145591111|ref|YP_001153113.1| - 0.0047 16.9 1.8 0.12 12.4 1.1 2.3 1 1 1 2 2 2 1 FlxA-like protein Muted PF14942.6 gi|145591111|ref|YP_001153113.1| - 0.0047 17.3 7.3 0.0088 16.4 5.3 2.0 1 1 1 2 2 2 1 Organelle biogenesis, Muted-like protein Snf7 PF03357.21 gi|145591111|ref|YP_001153113.1| - 0.0048 16.5 8.6 0.02 14.5 5.6 2.1 1 1 1 2 2 2 1 Snf7 SlyX PF04102.12 gi|145591111|ref|YP_001153113.1| - 0.0048 17.5 11.9 1.6 9.4 2.3 4.0 1 1 2 3 3 3 0 SlyX DinI PF06183.13 gi|145591111|ref|YP_001153113.1| - 0.005 17.1 6.8 10 6.5 0.1 4.5 2 2 2 4 4 4 0 DinI-like family ISG65-75 PF11727.8 gi|145591111|ref|YP_001153113.1| - 0.0052 16.1 1.0 0.0076 15.5 1.0 1.4 1 0 0 1 1 1 1 Invariant surface glycoprotein AAA_32 PF13654.6 gi|145591111|ref|YP_001153113.1| - 0.0059 15.5 3.8 0.0096 14.8 3.8 1.4 1 1 0 1 1 1 1 AAA domain TcpS PF17456.2 gi|145591111|ref|YP_001153113.1| - 0.0063 16.6 3.8 0.11 12.5 0.6 2.2 1 1 1 2 2 2 1 Toxin-coregulated pilus protein S Prefoldin PF02996.17 gi|145591111|ref|YP_001153113.1| - 0.0072 16.2 8.8 0.68 9.9 0.1 3.2 1 1 2 3 3 3 1 Prefoldin subunit Tropomyosin_1 PF12718.7 gi|145591111|ref|YP_001153113.1| - 0.0072 16.5 9.1 0.011 15.9 9.1 1.3 1 0 0 1 1 1 1 Tropomyosin like FUSC PF04632.12 gi|145591111|ref|YP_001153113.1| - 0.0074 14.9 3.2 0.0096 14.5 3.2 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family DUF1351 PF07083.11 gi|145591111|ref|YP_001153113.1| - 0.0084 15.9 6.4 0.018 14.8 3.6 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF1351) Taxilin PF09728.9 gi|145591111|ref|YP_001153113.1| - 0.0086 15.3 6.5 0.011 15.0 6.5 1.1 1 0 0 1 1 1 1 Myosin-like coiled-coil protein LMBR1 PF04791.16 gi|145591111|ref|YP_001153113.1| - 0.0089 15.0 2.9 0.0092 14.9 2.9 1.0 1 0 0 1 1 1 1 LMBR1-like membrane protein MIS13 PF08202.11 gi|145591111|ref|YP_001153113.1| - 0.0094 15.3 3.1 0.016 14.5 3.1 1.4 1 1 0 1 1 1 1 Mis12-Mtw1 protein family OmpH PF03938.14 gi|145591111|ref|YP_001153113.1| - 0.0095 16.3 5.3 0.012 16.0 2.9 1.9 1 1 1 2 2 2 1 Outer membrane protein (OmpH-like) DivIC PF04977.15 gi|145591111|ref|YP_001153113.1| - 0.0098 15.6 10.2 0.1 12.4 0.4 2.9 1 1 1 2 2 2 1 Septum formation initiator Phasin PF05597.11 gi|145591111|ref|YP_001153113.1| - 0.011 15.7 6.3 0.054 13.5 6.2 2.2 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Lipoprotein_6 PF01441.19 gi|145591111|ref|YP_001153113.1| - 0.012 15.6 4.2 0.024 14.7 2.4 2.0 1 1 1 2 2 2 0 Lipoprotein RPW8 PF05659.11 gi|145591111|ref|YP_001153113.1| - 0.012 15.3 7.1 0.93 9.2 3.5 3.1 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Rho_Binding PF08912.11 gi|145591111|ref|YP_001153113.1| - 0.013 16.3 3.1 0.41 11.5 1.1 2.6 1 1 1 2 2 2 0 Rho Binding FANCI_S4 PF14678.6 gi|145591111|ref|YP_001153113.1| - 0.014 14.5 1.4 0.02 14.1 1.4 1.3 1 1 0 1 1 1 0 FANCI solenoid 4 HAP1_N PF04849.13 gi|145591111|ref|YP_001153113.1| - 0.014 14.6 7.2 0.033 13.4 2.3 2.1 1 1 0 1 1 1 0 HAP1 N-terminal conserved region Lipoprotein_7 PF01540.16 gi|145591111|ref|YP_001153113.1| - 0.014 14.7 9.4 0.076 12.3 6.8 1.9 1 1 0 1 1 1 0 Adhesin lipoprotein CAP_N PF01213.19 gi|145591111|ref|YP_001153113.1| - 0.014 14.9 0.4 0.017 14.6 0.4 1.0 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal DLP_helical PF18709.1 gi|145591111|ref|YP_001153113.1| - 0.015 14.5 5.1 0.02 14.1 5.1 1.2 1 0 0 1 1 1 0 Dynamin-like helical domain Spectrin PF00435.21 gi|145591111|ref|YP_001153113.1| - 0.015 15.7 4.9 0.071 13.6 1.5 2.5 1 1 1 2 2 2 0 Spectrin repeat DUF848 PF05852.11 gi|145591111|ref|YP_001153113.1| - 0.017 15.2 8.4 0.027 14.6 7.2 1.8 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) DUF2802 PF10975.8 gi|145591111|ref|YP_001153113.1| - 0.018 15.2 2.8 16 5.7 2.8 3.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) DUF1640 PF07798.11 gi|145591111|ref|YP_001153113.1| - 0.018 15.1 10.4 0.03 14.4 10.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) Tropomyosin PF00261.20 gi|145591111|ref|YP_001153113.1| - 0.019 14.3 12.9 0.072 12.4 12.9 1.8 1 1 0 1 1 1 0 Tropomyosin Spc7 PF08317.11 gi|145591111|ref|YP_001153113.1| - 0.019 13.9 8.7 0.11 11.3 8.7 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein DHC_N1 PF08385.12 gi|145591111|ref|YP_001153113.1| - 0.019 13.6 5.2 0.021 13.5 5.2 1.1 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 Sec5 PF15469.6 gi|145591111|ref|YP_001153113.1| - 0.019 14.8 5.3 0.26 11.1 2.7 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec5 TPR_MLP1_2 PF07926.12 gi|145591111|ref|YP_001153113.1| - 0.019 15.0 7.1 0.064 13.3 5.4 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein COG5 PF10392.9 gi|145591111|ref|YP_001153113.1| - 0.019 15.1 3.8 0.042 14.0 3.8 1.8 1 1 0 1 1 1 0 Golgi transport complex subunit 5 Flagellin_C PF00700.21 gi|145591111|ref|YP_001153113.1| - 0.02 15.2 4.9 2.7 8.4 2.3 3.2 1 1 1 2 2 2 0 Bacterial flagellin C-terminal helical region ERM PF00769.19 gi|145591111|ref|YP_001153113.1| - 0.02 14.7 5.1 0.026 14.4 5.1 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family DUF4200 PF13863.6 gi|145591111|ref|YP_001153113.1| - 0.021 15.2 8.8 2.7 8.4 4.1 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Phage_GPO PF05929.11 gi|145591111|ref|YP_001153113.1| - 0.021 14.5 1.1 0.027 14.1 1.1 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase ATF7IP_BD PF16788.5 gi|145591111|ref|YP_001153113.1| - 0.021 14.9 3.6 0.068 13.3 2.1 2.2 1 1 3 4 4 3 0 ATF-interacting protein binding domain DUF4041 PF13250.6 gi|145591111|ref|YP_001153113.1| - 0.022 14.6 7.7 3.5 7.6 2.0 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4041) Vip3A_N PF12495.8 gi|145591111|ref|YP_001153113.1| - 0.022 14.6 3.4 0.068 13.1 3.4 1.9 1 1 0 1 1 1 0 Vegetative insecticide protein 3A N terminal Sec3_C PF09763.9 gi|145591111|ref|YP_001153113.1| - 0.023 13.1 6.9 0.21 9.9 0.2 2.1 1 1 0 2 2 2 0 Exocyst complex component Sec3 Sec34 PF04136.15 gi|145591111|ref|YP_001153113.1| - 0.024 14.5 3.8 0.048 13.5 1.4 2.1 1 1 1 2 2 2 0 Sec34-like family YkyA PF10368.9 gi|145591111|ref|YP_001153113.1| - 0.026 14.2 7.2 0.085 12.5 6.1 1.9 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein HalX PF08663.10 gi|145591111|ref|YP_001153113.1| - 0.027 14.8 13.1 4 7.8 4.3 3.9 1 1 1 2 2 2 0 HalX domain DUF2959 PF11172.8 gi|145591111|ref|YP_001153113.1| - 0.028 14.6 4.5 0.13 12.4 4.5 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) Dynactin_p22 PF07426.11 gi|145591111|ref|YP_001153113.1| - 0.028 14.3 5.9 0.039 13.8 5.9 1.2 1 0 0 1 1 1 0 Dynactin subunit p22 IFT57 PF10498.9 gi|145591111|ref|YP_001153113.1| - 0.029 13.3 6.3 0.045 12.7 4.9 1.7 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 KMP11 PF03037.16 gi|145591111|ref|YP_001153113.1| - 0.031 15.1 4.5 1 10.2 2.2 3.5 1 1 1 2 2 2 0 Kinetoplastid membrane protein 11 DASH_Duo1 PF08651.10 gi|145591111|ref|YP_001153113.1| - 0.032 14.0 6.3 0.17 11.7 0.3 3.1 1 1 2 3 3 3 0 DASH complex subunit Duo1 GldM_N PF12081.8 gi|145591111|ref|YP_001153113.1| - 0.032 14.3 1.9 0.046 13.8 1.9 1.3 1 0 0 1 1 1 0 GldM N-terminal domain DUF4795 PF16043.5 gi|145591111|ref|YP_001153113.1| - 0.032 13.8 10.7 0.22 11.1 10.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) CorA PF01544.18 gi|145591111|ref|YP_001153113.1| - 0.037 13.4 13.5 0.14 11.4 6.9 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein YtxH PF12732.7 gi|145591111|ref|YP_001153113.1| - 0.039 14.5 2.9 0.76 10.3 0.6 2.2 1 1 1 2 2 2 0 YtxH-like protein DUF2884 PF11101.8 gi|145591111|ref|YP_001153113.1| - 0.04 13.4 2.9 0.31 10.5 2.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF1515 PF07439.11 gi|145591111|ref|YP_001153113.1| - 0.043 13.9 8.0 1.3 9.0 1.6 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) Uds1 PF15456.6 gi|145591111|ref|YP_001153113.1| - 0.043 14.0 10.4 0.63 10.2 9.8 2.9 1 1 0 1 1 1 0 Up-regulated During Septation CREPT PF16566.5 gi|145591111|ref|YP_001153113.1| - 0.044 14.0 5.6 2.6 8.2 2.2 2.2 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour PqqD PF05402.12 gi|145591111|ref|YP_001153113.1| - 0.048 14.0 4.1 3 8.2 3.3 3.0 1 1 1 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) DUF4854 PF16146.5 gi|145591111|ref|YP_001153113.1| - 0.056 13.8 0.2 0.11 12.9 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4854) Histidinol_dh PF00815.20 gi|145591111|ref|YP_001153113.1| - 0.056 12.4 2.0 0.067 12.2 2.0 1.1 1 0 0 1 1 1 0 Histidinol dehydrogenase Vps5 PF09325.10 gi|145591111|ref|YP_001153113.1| - 0.057 13.0 5.1 0.081 12.5 5.1 1.2 1 0 0 1 1 1 0 Vps5 C terminal like EDR1 PF14381.6 gi|145591111|ref|YP_001153113.1| - 0.06 13.1 0.5 0.068 12.9 0.5 1.1 1 0 0 1 1 1 0 Ethylene-responsive protein kinase Le-CTR1 CK2S PF15011.6 gi|145591111|ref|YP_001153113.1| - 0.064 13.1 6.6 0.18 11.7 2.0 2.2 1 1 1 2 2 2 0 Casein Kinase 2 substrate MtrG PF04210.13 gi|145591111|ref|YP_001153113.1| - 0.065 13.1 8.8 6 6.8 1.3 3.9 1 1 3 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G YabA PF06156.13 gi|145591111|ref|YP_001153113.1| - 0.067 13.8 5.7 2.5 8.8 2.6 2.6 1 1 2 3 3 3 0 Initiation control protein YabA Allexi_40kDa PF05549.11 gi|145591111|ref|YP_001153113.1| - 0.068 12.7 3.1 0.1 12.1 2.5 1.6 1 1 0 1 1 1 0 Allexivirus 40kDa protein DUF4527 PF15030.6 gi|145591111|ref|YP_001153113.1| - 0.069 12.6 1.9 0.096 12.1 1.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4527) FPP PF05911.11 gi|145591111|ref|YP_001153113.1| - 0.071 11.3 7.7 0.078 11.2 3.6 2.0 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil Fmp27_WPPW PF10359.9 gi|145591111|ref|YP_001153113.1| - 0.071 12.0 8.7 0.36 9.6 5.9 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain BshC PF10079.9 gi|145591111|ref|YP_001153113.1| - 0.081 11.6 4.2 0.12 11.1 4.0 1.4 1 1 0 1 1 1 0 Bacillithiol biosynthesis BshC DUF3135 PF11333.8 gi|145591111|ref|YP_001153113.1| - 0.085 13.1 1.0 1.1 9.6 0.4 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3135) HAUS-augmin3 PF14932.6 gi|145591111|ref|YP_001153113.1| - 0.09 12.3 1.6 0.27 10.8 1.2 1.8 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Erp_C PF06780.11 gi|145591111|ref|YP_001153113.1| - 0.093 12.8 8.9 1.9 8.5 6.5 3.1 1 1 0 2 2 2 0 Erp protein C-terminus FlaC_arch PF05377.11 gi|145591111|ref|YP_001153113.1| - 0.094 13.1 9.6 0.59 10.6 1.4 3.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) CR6_interact PF10147.9 gi|145591111|ref|YP_001153113.1| - 0.098 12.4 5.8 0.15 11.7 5.8 1.4 1 1 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 CENP-H PF05837.12 gi|145591111|ref|YP_001153113.1| - 0.1 13.0 8.7 0.48 10.9 4.9 2.1 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Syntaxin-6_N PF09177.11 gi|145591111|ref|YP_001153113.1| - 0.1 13.2 7.2 0.24 12.0 4.3 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal STAT_alpha PF01017.20 gi|145591111|ref|YP_001153113.1| - 0.11 12.4 5.6 0.45 10.4 5.7 1.9 1 1 0 1 1 1 0 STAT protein, all-alpha domain HIP1_clath_bdg PF16515.5 gi|145591111|ref|YP_001153113.1| - 0.11 13.1 5.5 0.78 10.4 2.1 2.3 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Flagellin_N PF00669.20 gi|145591111|ref|YP_001153113.1| - 0.11 12.6 4.2 0.12 12.5 2.2 1.8 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region Mitofilin PF09731.9 gi|145591111|ref|YP_001153113.1| - 0.11 11.3 6.8 0.13 11.1 6.8 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein NYD-SP28 PF14772.6 gi|145591111|ref|YP_001153113.1| - 0.11 12.5 9.0 0.66 10.1 8.0 2.5 1 1 1 2 2 2 0 Sperm tail Stathmin PF00836.19 gi|145591111|ref|YP_001153113.1| - 0.11 12.4 4.0 0.33 10.9 1.6 2.1 1 1 1 2 2 2 0 Stathmin family LUC7 PF03194.15 gi|145591111|ref|YP_001153113.1| - 0.11 12.1 7.6 0.67 9.6 7.6 1.9 1 1 0 1 1 1 0 LUC7 N_terminus DASH_Hsk3 PF08227.11 gi|145591111|ref|YP_001153113.1| - 0.12 12.8 0.1 6.4 7.2 0.0 2.8 1 1 1 2 2 2 0 DASH complex subunit Hsk3 like WASH_WAHD PF11945.8 gi|145591111|ref|YP_001153113.1| - 0.12 11.9 8.7 0.6 9.6 0.5 2.4 1 1 1 2 2 2 0 WAHD domain of WASH complex COG2 PF06148.11 gi|145591111|ref|YP_001153113.1| - 0.12 12.4 6.0 1.8 8.7 1.6 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TraF_2 PF13729.6 gi|145591111|ref|YP_001153113.1| - 0.14 11.5 8.2 0.43 9.9 3.1 2.1 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF2120 PF09893.9 gi|145591111|ref|YP_001153113.1| - 0.14 12.2 8.3 0.4 10.8 1.3 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) TMF_DNA_bd PF12329.8 gi|145591111|ref|YP_001153113.1| - 0.15 12.1 8.8 3.3 7.8 4.1 3.2 1 1 2 3 3 3 0 TATA element modulatory factor 1 DNA binding APG6_N PF17675.1 gi|145591111|ref|YP_001153113.1| - 0.15 12.6 6.2 0.53 10.8 6.4 1.8 1 1 0 1 1 1 0 Apg6 coiled-coil region Tweety PF04906.13 gi|145591111|ref|YP_001153113.1| - 0.15 10.7 3.5 0.27 9.9 1.1 1.8 1 1 1 2 2 2 0 Tweety CHD5 PF04420.14 gi|145591111|ref|YP_001153113.1| - 0.15 11.9 3.8 12 5.7 0.1 2.8 1 1 1 2 2 2 0 CHD5-like protein Syntaxin PF00804.25 gi|145591111|ref|YP_001153113.1| - 0.15 11.7 13.0 0.13 11.9 6.8 2.3 1 1 1 2 2 2 0 Syntaxin DUF5082 PF16888.5 gi|145591111|ref|YP_001153113.1| - 0.15 12.3 8.2 0.69 10.2 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) V-ATPase_G_2 PF16999.5 gi|145591111|ref|YP_001153113.1| - 0.16 12.4 4.2 0.26 11.7 4.1 1.5 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit SOAR PF16533.5 gi|145591111|ref|YP_001153113.1| - 0.16 11.9 5.5 2.6 8.0 0.3 3.0 1 1 3 4 4 4 0 STIM1 Orai1-activating region MutS_IV PF05190.18 gi|145591111|ref|YP_001153113.1| - 0.16 12.3 7.5 3.4 8.1 0.2 3.5 1 1 1 2 2 2 0 MutS family domain IV Filo_VP35 PF02097.15 gi|145591111|ref|YP_001153113.1| - 0.17 10.9 1.2 1.2 8.1 0.3 1.9 1 1 1 2 2 2 0 Filoviridae VP35 Hemagglutinin PF00509.18 gi|145591111|ref|YP_001153113.1| - 0.17 10.2 10.6 0.74 8.2 3.1 2.6 1 1 3 4 4 4 0 Haemagglutinin Rad50_zn_hook PF04423.14 gi|145591111|ref|YP_001153113.1| - 0.18 11.7 4.8 17 5.3 0.1 4.4 3 2 2 6 6 4 0 Rad50 zinc hook motif Lipase_GDSL PF00657.22 gi|145591111|ref|YP_001153113.1| - 0.19 11.7 2.3 1.1 9.2 2.3 2.0 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase ORF6C PF10552.9 gi|145591111|ref|YP_001153113.1| - 0.19 11.8 7.6 3 8.0 1.9 3.7 1 1 1 2 2 2 0 ORF6C domain LidA_Long_CC PF18641.1 gi|145591111|ref|YP_001153113.1| - 0.19 11.8 6.1 2.6 8.1 5.9 2.3 1 1 0 1 1 1 0 LidA long coiled-coil domain UPF0184 PF03670.13 gi|145591111|ref|YP_001153113.1| - 0.19 12.1 9.1 0.25 11.8 0.5 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0184) DUF2730 PF10805.8 gi|145591111|ref|YP_001153113.1| - 0.21 11.7 4.6 0.5 10.5 1.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) ACCA PF03255.14 gi|145591111|ref|YP_001153113.1| - 0.22 11.4 4.5 3.2 7.6 4.5 2.2 1 1 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLZ PF16526.5 gi|145591111|ref|YP_001153113.1| - 0.22 11.9 8.8 3.1 8.2 0.2 2.9 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Peptidase_M75 PF09375.10 gi|145591111|ref|YP_001153113.1| - 0.23 10.9 3.0 1 8.8 3.0 1.9 1 1 0 1 1 1 0 Imelysin LPP PF04728.13 gi|145591111|ref|YP_001153113.1| - 0.23 11.9 10.3 9e+02 0.4 10.3 3.5 1 1 0 1 1 0 0 Lipoprotein leucine-zipper DUF4988 PF16378.5 gi|145591111|ref|YP_001153113.1| - 0.23 11.1 9.4 1 9.0 1.3 2.8 1 1 2 3 3 3 0 Domain of unknown function Atg14 PF10186.9 gi|145591111|ref|YP_001153113.1| - 0.24 10.5 9.0 0.58 9.2 9.0 1.6 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Hemerythrin PF01814.23 gi|145591111|ref|YP_001153113.1| - 0.26 11.9 4.2 9.5 6.9 4.1 2.5 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain V-SNARE PF05008.15 gi|145591111|ref|YP_001153113.1| - 0.29 11.6 8.0 0.37 11.2 3.0 2.3 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF1993 PF09351.10 gi|145591111|ref|YP_001153113.1| - 0.32 11.1 2.1 6.3 6.9 2.0 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1993) DUF2205 PF10224.9 gi|145591111|ref|YP_001153113.1| - 0.37 10.8 11.1 5.6 7.0 2.2 3.6 1 1 3 4 4 4 0 Short coiled-coil protein Nup88 PF10168.9 gi|145591111|ref|YP_001153113.1| - 0.38 8.5 7.3 5.1 4.8 0.6 1.6 1 1 0 1 1 1 0 Nuclear pore component GFD1 PF17331.2 gi|145591111|ref|YP_001153113.1| - 0.42 10.8 4.1 67 3.9 0.0 4.8 5 0 0 5 5 3 0 GFD1 mRNA transport factor FemAB PF02388.16 gi|145591111|ref|YP_001153113.1| - 0.47 9.3 4.6 1.6 7.5 4.2 1.8 1 1 0 1 1 1 0 FemAB family PMC2NT PF08066.12 gi|145591111|ref|YP_001153113.1| - 0.51 11.1 6.9 1.4 9.7 1.9 2.5 1 1 1 2 2 2 0 PMC2NT (NUC016) domain Rootletin PF15035.6 gi|145591111|ref|YP_001153113.1| - 0.54 10.2 7.7 1.4 8.9 7.7 1.8 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Syntaxin_2 PF14523.6 gi|145591111|ref|YP_001153113.1| - 0.55 10.6 10.2 6.1 7.3 10.2 2.3 1 1 0 1 1 1 0 Syntaxin-like protein DUF883 PF05957.13 gi|145591111|ref|YP_001153113.1| - 0.66 10.6 5.5 1.6 9.4 3.5 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) FAM76 PF16046.5 gi|145591111|ref|YP_001153113.1| - 0.78 9.0 5.9 0.44 9.8 4.1 1.5 1 1 0 1 1 1 0 FAM76 protein DUF4140 PF13600.6 gi|145591111|ref|YP_001153113.1| - 0.86 10.1 10.4 1.7 9.1 0.4 2.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) XLF PF09302.11 gi|145591111|ref|YP_001153113.1| - 0.89 9.7 5.3 16 5.6 0.2 2.3 1 1 1 2 2 2 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component DUF3375 PF11855.8 gi|145591111|ref|YP_001153113.1| - 0.98 8.3 13.6 0.11 11.3 3.0 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF3375) UPF0242 PF06785.11 gi|145591111|ref|YP_001153113.1| - 1.1 9.3 8.8 2 8.5 8.8 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Rota_NSP4 PF01452.16 gi|145591111|ref|YP_001153113.1| - 1.1 8.9 9.4 0.46 10.1 5.4 2.0 1 1 1 2 2 2 0 Rotavirus non structural protein Cnl2_NKP2 PF09447.10 gi|145591111|ref|YP_001153113.1| - 1.1 9.5 5.3 1.3 9.3 0.2 2.8 2 1 1 3 3 2 0 Cnl2/NKP2 family protein DUF4337 PF14235.6 gi|145591111|ref|YP_001153113.1| - 1.1 9.3 3.7 1.9 8.6 3.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) CCDC-167 PF15188.6 gi|145591111|ref|YP_001153113.1| - 1.3 9.4 11.1 0.39 11.1 5.9 2.3 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF5446 PF17522.2 gi|145591111|ref|YP_001153113.1| - 2 8.7 10.6 3.2 8.0 4.6 3.1 1 1 2 3 3 3 0 Family of unknown function (DUF5446) FIN1 PF17300.2 gi|145591111|ref|YP_001153113.1| - 2.7 7.5 8.1 3.7 7.0 7.7 1.4 1 1 0 1 1 1 0 Filaments in between nuclei protein-1 DASH_Dad1 PF08649.10 gi|145591111|ref|YP_001153113.1| - 5.5 7.3 9.5 5.2 7.3 0.6 3.2 1 1 0 2 2 2 0 DASH complex subunit Dad1 TRPM_tetra PF16519.5 gi|145591111|ref|YP_001153113.1| - 6.3 7.0 13.5 0.41 10.8 1.2 3.3 1 1 1 3 3 3 0 Tetramerisation domain of TRPM UvrB PF12344.8 gi|145591111|ref|YP_001153113.1| - 9 6.2 9.6 11 6.0 0.3 3.5 2 1 2 4 4 2 0 Ultra-violet resistance protein B PaREP1 PF05942.11 gi|145591113|ref|YP_001153115.1| - 5.9e-14 52.0 1.9 7.2e-14 51.7 1.9 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family GABP-alpha PF11620.8 gi|145591113|ref|YP_001153115.1| - 0.09 13.0 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 GA-binding protein alpha chain Invasin_D3 PF09134.10 gi|145591114|ref|YP_001153116.1| - 0.00016 21.9 0.4 0.69 10.3 0.0 2.8 1 1 1 2 2 2 2 Invasin, domain 3 Fn3-like PF14310.6 gi|145591114|ref|YP_001153116.1| - 0.0047 17.0 0.9 6.8 6.9 0.1 4.2 4 0 0 4 4 4 1 Fibronectin type III-like domain MHYT PF03707.16 gi|145591114|ref|YP_001153116.1| - 0.0095 16.1 1.7 0.029 14.5 1.7 1.8 1 0 0 1 1 1 1 Bacterial signalling protein N terminal repeat Gram_pos_anchor PF00746.21 gi|145591114|ref|YP_001153116.1| - 3.9 7.5 7.3 0.66 10.0 2.9 2.0 2 0 0 2 2 2 0 LPXTG cell wall anchor motif DUF2204 PF09970.9 gi|145591116|ref|YP_001153118.1| - 9.3e-05 22.1 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) TrmB PF01978.19 gi|145591118|ref|YP_001153120.1| - 0.0065 16.3 0.0 0.011 15.6 0.0 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|145591118|ref|YP_001153120.1| - 0.077 13.3 0.0 0.11 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TctB PF07331.11 gi|145591119|ref|YP_001153121.1| - 0.00016 22.0 2.8 0.00016 22.0 2.8 2.0 1 1 1 2 2 2 1 Tripartite tricarboxylate transporter TctB family Phage_holin_4_2 PF04020.13 gi|145591119|ref|YP_001153121.1| - 0.0037 17.9 13.2 0.016 15.8 11.8 1.9 1 1 0 1 1 1 1 Mycobacterial 4 TMS phage holin, superfamily IV Gly-zipper_Omp PF13488.6 gi|145591119|ref|YP_001153121.1| - 0.042 13.9 1.3 0.042 13.9 1.3 2.1 2 1 0 2 2 2 0 Glycine zipper Yip1 PF04893.17 gi|145591119|ref|YP_001153121.1| - 0.31 10.8 22.3 0.56 9.9 22.3 1.5 1 1 0 1 1 1 0 Yip1 domain Phage_holin_2_4 PF16082.5 gi|145591119|ref|YP_001153121.1| - 0.61 9.9 0.1 0.61 9.9 0.1 2.4 3 1 0 3 3 3 0 Bacteriophage holin family, superfamily II-like Fer4 PF00037.27 gi|145591121|ref|YP_001153123.1| - 1.1e-22 78.9 41.5 5.2e-07 29.2 2.8 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145591121|ref|YP_001153123.1| - 4e-17 62.5 37.2 1.7e-08 34.9 9.8 3.7 3 2 0 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591121|ref|YP_001153123.1| - 3.2e-15 55.5 41.4 1.9e-05 24.6 4.3 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591121|ref|YP_001153123.1| - 8e-15 54.7 34.9 3.2e-11 43.2 8.1 4.0 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591121|ref|YP_001153123.1| - 8.4e-15 55.5 29.5 0.00083 20.2 0.7 4.8 4 1 0 4 4 4 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|145591121|ref|YP_001153123.1| - 6.6e-14 51.8 30.7 1.2e-05 25.4 7.8 4.2 4 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591121|ref|YP_001153123.1| - 8.7e-11 41.2 43.6 0.0033 17.4 3.9 5.9 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591121|ref|YP_001153123.1| - 3.1e-10 40.0 41.0 9.3e-06 25.7 12.0 4.6 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145591121|ref|YP_001153123.1| - 2.1e-08 34.5 36.7 0.002 18.5 0.7 5.0 3 2 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145591121|ref|YP_001153123.1| - 1.2e-07 31.6 36.5 0.011 16.2 3.3 5.5 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|145591121|ref|YP_001153123.1| - 1.5e-06 28.6 36.9 0.04 14.5 0.9 5.5 3 3 2 5 5 5 4 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145591121|ref|YP_001153123.1| - 0.0014 19.4 22.5 1.9 9.4 1.6 4.6 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145591121|ref|YP_001153123.1| - 0.0026 17.9 28.0 0.0087 16.2 9.6 3.9 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591121|ref|YP_001153123.1| - 0.0026 18.6 6.0 0.0026 18.6 6.0 5.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145591121|ref|YP_001153123.1| - 0.017 15.7 37.4 0.61 10.7 1.4 5.1 4 1 1 5 5 4 0 4Fe-4S single cluster domain of Ferredoxin I ETF_QO PF05187.13 gi|145591121|ref|YP_001153123.1| - 0.018 15.1 9.2 0.038 14.1 0.5 2.5 2 0 0 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S DUF2321 PF10083.9 gi|145591121|ref|YP_001153123.1| - 0.46 10.1 4.8 0.43 10.2 2.4 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) Fer4_15 PF13459.6 gi|145591121|ref|YP_001153123.1| - 2.7 8.8 32.7 1.3 9.8 1.6 5.6 4 1 1 5 5 4 0 4Fe-4S single cluster domain CoA_trans PF01144.23 gi|145591122|ref|YP_001153124.1| - 3.1e-40 137.9 0.3 1.8e-35 122.3 0.0 2.9 2 1 0 2 2 2 2 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|145591122|ref|YP_001153124.1| - 8.4e-06 24.4 0.1 1.7e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Malonate decarboxylase, alpha subunit, transporter ArsA_ATPase PF02374.15 gi|145591125|ref|YP_001153127.1| - 5.2e-58 196.6 0.5 5.8e-58 196.5 0.5 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|145591125|ref|YP_001153127.1| - 9e-11 41.7 1.1 1.8e-05 24.4 0.1 2.2 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|145591125|ref|YP_001153127.1| - 4.1e-08 33.3 0.0 6.8e-08 32.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|145591125|ref|YP_001153127.1| - 3.1e-07 30.5 0.1 5.8e-07 29.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|145591125|ref|YP_001153127.1| - 0.012 15.1 0.0 0.028 13.9 0.0 1.5 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.6 gi|145591125|ref|YP_001153127.1| - 0.043 14.2 0.0 0.1 13.0 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.22 gi|145591125|ref|YP_001153127.1| - 0.12 11.5 0.8 0.22 10.7 0.1 1.8 2 0 0 2 2 2 0 NB-ARC domain CBP_BcsQ PF06564.12 gi|145591125|ref|YP_001153127.1| - 0.13 11.8 0.0 0.28 10.6 0.0 1.6 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|145591126|ref|YP_001153128.1| - 1.4e-69 234.6 0.2 1.6e-69 234.5 0.2 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.6 gi|145591126|ref|YP_001153128.1| - 2.2e-13 50.5 0.1 5.9e-13 49.1 0.1 1.6 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|145591126|ref|YP_001153128.1| - 9.8e-13 48.3 0.0 1.6e-12 47.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|145591126|ref|YP_001153128.1| - 1.8e-10 40.7 4.9 0.00063 19.3 2.7 3.1 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|145591126|ref|YP_001153128.1| - 3.3e-05 23.5 2.0 6.9e-05 22.4 0.1 2.5 4 1 0 4 4 4 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family XPB_DRD PF18458.1 gi|145591126|ref|YP_001153128.1| - 0.0023 17.7 0.2 0.0051 16.7 0.2 1.6 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain CBP_BcsQ PF06564.12 gi|145591126|ref|YP_001153128.1| - 0.049 13.1 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|145591126|ref|YP_001153128.1| - 0.053 12.7 0.1 0.13 11.4 0.1 1.7 2 0 0 2 2 2 0 NB-ARC domain GFD1 PF17331.2 gi|145591126|ref|YP_001153128.1| - 0.11 12.7 0.3 0.11 12.7 0.3 2.3 2 0 0 2 2 1 0 GFD1 mRNA transport factor SRP54 PF00448.22 gi|145591126|ref|YP_001153128.1| - 0.12 12.0 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|145591126|ref|YP_001153128.1| - 0.2 11.1 10.1 1.8e+02 1.4 10.1 3.7 1 1 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|145591126|ref|YP_001153128.1| - 0.39 10.4 2.9 0.76 9.5 1.2 2.4 2 1 0 2 2 2 0 AAA domain CstA PF02554.14 gi|145591128|ref|YP_001153130.1| - 4.2e-89 299.1 23.7 4.2e-89 299.1 23.7 2.2 1 1 1 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|145591128|ref|YP_001153130.1| - 5.4e-18 65.5 9.5 5.4e-18 65.5 9.5 2.9 3 1 0 3 3 3 1 5TM C-terminal transporter carbon starvation CstA CPBP PF02517.16 gi|145591130|ref|YP_001153132.1| - 1.9e-08 34.6 11.9 1.9e-08 34.6 11.9 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease EamA PF00892.20 gi|145591131|ref|YP_001153133.1| - 2.9e-32 111.7 38.6 2.8e-19 69.7 16.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family TusA PF01206.17 gi|145591132|ref|YP_001153134.1| - 0.002 17.9 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Rhodanese PF00581.20 gi|145591133|ref|YP_001153135.1| - 1.1e-40 138.5 0.0 2.1e-19 70.0 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain UL17 PF17640.2 gi|145591133|ref|YP_001153135.1| - 0.12 12.3 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized UL17 DUF1641 PF07849.11 gi|145591134|ref|YP_001153136.1| - 1.6e-15 56.6 0.5 2.8e-15 55.9 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) Cons_hypoth698 PF03601.14 gi|145591135|ref|YP_001153137.1| - 6.3e-28 97.5 23.8 1.3e-27 96.5 23.8 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 698 Radical_SAM PF04055.21 gi|145591136|ref|YP_001153138.1| - 8.7e-18 65.2 0.0 1.8e-17 64.2 0.0 1.5 1 1 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|145591136|ref|YP_001153138.1| - 7.6e-10 39.2 2.3 9.1e-10 38.9 0.3 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Nitrate_red_gam PF02665.14 gi|145591137|ref|YP_001153139.1| - 3.5e-32 111.7 18.9 3.6e-32 111.7 9.9 2.1 2 0 0 2 2 2 2 Nitrate reductase gamma subunit NIR_SIR PF01077.22 gi|145591138|ref|YP_001153140.1| - 3.7e-29 101.3 0.1 5.6e-29 100.7 0.1 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|145591138|ref|YP_001153140.1| - 0.014 15.2 0.1 0.087 12.7 0.0 2.4 3 0 0 3 3 3 0 Nitrite/Sulfite reductase ferredoxin-like half domain NIR_SIR PF01077.22 gi|145591139|ref|YP_001153141.1| - 6.8e-38 129.7 0.0 1e-37 129.1 0.0 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|145591139|ref|YP_001153141.1| - 4.5e-12 45.6 0.0 7.7e-12 44.9 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_9 PF13187.6 gi|145591139|ref|YP_001153141.1| - 0.00067 19.8 1.2 0.0018 18.4 1.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591139|ref|YP_001153141.1| - 0.0011 19.6 0.9 0.058 14.0 0.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591139|ref|YP_001153141.1| - 0.0016 18.2 7.8 0.079 12.8 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|145591139|ref|YP_001153141.1| - 0.0024 18.3 0.4 0.0079 16.6 0.2 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591139|ref|YP_001153141.1| - 0.075 13.6 0.6 0.075 13.6 0.6 2.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|145591139|ref|YP_001153141.1| - 0.084 13.1 0.8 0.17 12.1 0.8 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591139|ref|YP_001153141.1| - 0.087 12.9 7.3 0.52 10.5 4.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591139|ref|YP_001153141.1| - 0.091 12.9 3.8 0.51 10.5 2.6 1.9 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|145591139|ref|YP_001153141.1| - 1.5 8.9 8.5 7 6.8 0.0 3.8 3 1 1 4 4 4 0 Divergent 4Fe-4S mono-cluster Fer4_2 PF12797.7 gi|145591139|ref|YP_001153141.1| - 4.6 7.5 9.2 0.52 10.5 3.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain YcxB PF14317.6 gi|145591140|ref|YP_001153142.1| - 0.029 14.1 0.3 0.029 14.1 0.3 2.5 3 0 0 3 3 3 0 YcxB-like protein DsrC PF04358.13 gi|145591141|ref|YP_001153143.1| - 3.7e-35 120.7 0.0 4.2e-35 120.5 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.11 gi|145591141|ref|YP_001153143.1| - 0.052 14.1 0.0 0.38 11.3 0.0 2.0 2 0 0 2 2 2 0 MerR, DNA binding INTS5_N PF14837.6 gi|145591141|ref|YP_001153143.1| - 0.18 11.4 0.0 0.22 11.1 0.0 1.1 1 0 0 1 1 1 0 Integrator complex subunit 5 N-terminus TrmB PF01978.19 gi|145591142|ref|YP_001153144.1| - 0.1 12.5 0.2 0.21 11.5 0.2 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pyr_redox_2 PF07992.14 gi|145591143|ref|YP_001153145.1| - 8.1e-17 61.4 0.1 9.4e-08 31.6 0.0 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145591143|ref|YP_001153145.1| - 5.5e-05 23.7 0.9 0.0015 19.0 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase RNA_pol_Rpb5_C PF01191.19 gi|145591143|ref|YP_001153145.1| - 0.0086 15.9 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain NAD_binding_8 PF13450.6 gi|145591143|ref|YP_001153145.1| - 0.036 14.3 0.1 0.075 13.3 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|145591143|ref|YP_001153145.1| - 0.042 13.8 0.2 3.7 7.5 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Pribosyltran PF00156.27 gi|145591143|ref|YP_001153145.1| - 0.11 12.0 0.1 0.43 10.1 0.0 1.9 2 0 0 2 2 2 0 Phosphoribosyl transferase domain DUF1641 PF07849.11 gi|145591144|ref|YP_001153146.1| - 7.3e-06 25.8 0.1 1.8e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) Cut8 PF08559.10 gi|145591144|ref|YP_001153146.1| - 0.16 11.6 0.4 0.21 11.2 0.4 1.2 1 0 0 1 1 1 0 Cut8, nuclear proteasome tether protein HTH_34 PF13601.6 gi|145591145|ref|YP_001153147.1| - 0.00041 20.5 0.1 0.00093 19.3 0.1 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|145591145|ref|YP_001153147.1| - 0.00061 20.1 0.0 0.0014 19.0 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator Ribosomal_S25 PF03297.15 gi|145591145|ref|YP_001153147.1| - 0.041 14.1 0.3 0.8 9.9 0.0 2.5 3 0 0 3 3 3 0 S25 ribosomal protein TFIIE_alpha PF02002.17 gi|145591145|ref|YP_001153147.1| - 0.074 12.9 0.1 3.9 7.4 0.1 2.2 2 0 0 2 2 2 0 TFIIE alpha subunit MarR PF01047.22 gi|145591145|ref|YP_001153147.1| - 0.086 12.8 0.0 0.27 11.2 0.0 1.8 2 0 0 2 2 2 0 MarR family Fer4_8 PF13183.6 gi|145591146|ref|YP_001153148.1| - 4.6e-11 43.0 3.8 4.6e-11 43.0 3.8 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591146|ref|YP_001153148.1| - 7.4e-09 36.0 4.6 7.4e-09 36.0 4.6 2.6 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591146|ref|YP_001153148.1| - 7.7e-09 36.0 17.8 2.8e-07 31.0 7.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145591146|ref|YP_001153148.1| - 2.5e-08 33.9 6.9 9.9e-08 32.0 6.9 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591146|ref|YP_001153148.1| - 1.9e-07 31.9 4.8 1.9e-07 31.9 4.8 2.2 2 0 0 2 2 1 1 4Fe-4S double cluster binding domain CCG PF02754.16 gi|145591146|ref|YP_001153148.1| - 4.8e-07 29.9 0.5 4.8e-07 29.9 0.5 2.9 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_9 PF13187.6 gi|145591146|ref|YP_001153148.1| - 1.1e-06 28.7 6.9 0.0001 22.4 8.8 2.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145591146|ref|YP_001153148.1| - 0.00092 19.5 14.5 0.0042 17.5 2.3 3.0 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|145591146|ref|YP_001153148.1| - 0.0038 17.0 3.6 0.0038 17.0 3.6 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145591146|ref|YP_001153148.1| - 0.0069 16.4 12.8 0.011 15.8 3.1 2.8 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145591146|ref|YP_001153148.1| - 0.0085 16.3 11.1 0.45 10.7 2.2 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591146|ref|YP_001153148.1| - 0.019 15.0 4.4 0.019 15.0 4.4 3.0 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145591146|ref|YP_001153148.1| - 0.036 14.8 1.5 1.4 9.7 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|145591146|ref|YP_001153148.1| - 0.12 12.5 12.9 9.3 6.5 13.0 2.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591146|ref|YP_001153148.1| - 0.18 12.4 8.6 0.81 10.3 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|145591146|ref|YP_001153148.1| - 1.9 9.4 11.1 4.1 8.3 1.3 2.8 1 1 3 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591146|ref|YP_001153148.1| - 2 9.5 22.2 0.22 12.5 5.0 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain EamA PF00892.20 gi|145591147|ref|YP_001153149.1| - 4.5e-12 46.3 8.9 4.9e-12 46.2 8.9 1.0 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.16 gi|145591147|ref|YP_001153149.1| - 0.019 14.3 4.0 0.037 13.4 4.0 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|145591147|ref|YP_001153149.1| - 0.034 14.2 1.3 0.035 14.1 1.3 1.3 1 1 0 1 1 1 0 Putative transmembrane family 234 HEPN PF05168.14 gi|145591149|ref|YP_001153151.1| - 0.006 16.7 0.0 0.056 13.6 0.0 2.0 1 1 1 2 2 2 1 HEPN domain ThiP_synth PF10120.9 gi|145591150|ref|YP_001153152.1| - 5e-41 140.1 0.0 5.8e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase DUF1641 PF07849.11 gi|145591151|ref|YP_001153153.1| - 3.8e-15 55.5 0.5 8.8e-15 54.3 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) HALZ PF02183.18 gi|145591151|ref|YP_001153153.1| - 0.014 15.6 1.1 0.025 14.8 1.1 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper DASH_Dad3 PF08656.10 gi|145591151|ref|YP_001153153.1| - 0.12 12.4 0.3 3.6 7.8 0.3 2.3 1 1 0 1 1 1 0 DASH complex subunit Dad3 Pyr_redox_2 PF07992.14 gi|145591152|ref|YP_001153154.1| - 3.7e-18 65.8 0.0 2e-17 63.4 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145591152|ref|YP_001153154.1| - 8.5e-05 23.0 0.0 0.041 14.5 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|145591152|ref|YP_001153154.1| - 0.37 11.0 2.6 4.6 7.5 0.1 3.0 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain NrfD PF03916.14 gi|145591153|ref|YP_001153155.1| - 5.7e-12 45.9 26.0 1.6e-11 44.5 26.0 1.8 1 1 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_7 PF12838.7 gi|145591154|ref|YP_001153156.1| - 4.8e-19 68.7 20.6 3.3e-09 37.2 4.9 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591154|ref|YP_001153156.1| - 8.5e-16 57.3 29.8 4.9e-07 29.5 1.8 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_11 PF13247.6 gi|145591154|ref|YP_001153156.1| - 1.4e-15 57.2 13.5 1.3e-09 38.1 3.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591154|ref|YP_001153156.1| - 1.7e-14 53.7 32.5 1.1e-06 28.7 2.2 2.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591154|ref|YP_001153156.1| - 6.9e-14 51.0 37.6 1e-07 31.5 2.6 5.6 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_8 PF13183.6 gi|145591154|ref|YP_001153156.1| - 3.4e-13 49.8 9.5 2.2e-06 28.0 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145591154|ref|YP_001153156.1| - 5.7e-11 42.4 28.4 2.5e-05 24.3 7.5 4.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591154|ref|YP_001153156.1| - 1.5e-10 40.5 36.0 5.5e-05 23.0 1.5 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|145591154|ref|YP_001153156.1| - 3.2e-09 37.2 14.9 0.00032 21.2 0.7 3.6 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591154|ref|YP_001153156.1| - 7e-09 36.0 38.4 0.0057 17.5 1.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|145591154|ref|YP_001153156.1| - 0.0003 21.1 36.8 0.0013 19.1 1.8 4.6 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591154|ref|YP_001153156.1| - 0.00052 20.1 30.9 0.0038 17.3 2.3 4.3 3 1 0 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591154|ref|YP_001153156.1| - 0.003 18.5 28.8 0.18 12.8 2.9 4.3 3 2 1 4 4 4 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|145591154|ref|YP_001153156.1| - 0.023 15.2 0.2 0.023 15.2 0.2 3.9 5 0 0 5 5 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|145591154|ref|YP_001153156.1| - 0.15 12.8 0.3 0.15 12.8 0.3 3.5 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|145591154|ref|YP_001153156.1| - 0.63 10.3 20.7 0.19 11.9 4.0 3.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|145591155|ref|YP_001153157.1| - 3.7e-37 128.3 0.0 5.9e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|145591155|ref|YP_001153157.1| - 3e-10 40.1 0.2 8.1e-09 35.5 0.2 2.5 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|145591155|ref|YP_001153157.1| - 2.4e-08 33.8 0.4 5.5e-08 32.7 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|145591155|ref|YP_001153157.1| - 0.0013 18.5 0.5 0.003 17.4 0.5 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdopterin_N PF18364.1 gi|145591155|ref|YP_001153157.1| - 0.11 12.5 0.2 59 3.8 0.1 3.5 3 0 0 3 3 3 0 Molybdopterin oxidoreductase N-terminal domain GlutR_N PF05201.15 gi|145591158|ref|YP_001153160.1| - 7.1e-29 100.5 0.0 1.2e-28 99.7 0.0 1.4 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|145591158|ref|YP_001153160.1| - 9.4e-19 67.8 0.6 2e-18 66.8 0.1 1.8 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|145591158|ref|YP_001153160.1| - 7.3e-09 36.1 0.3 2.3e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|145591158|ref|YP_001153160.1| - 8e-07 29.5 0.3 1.7e-06 28.4 0.3 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|145591158|ref|YP_001153160.1| - 0.0007 19.5 0.2 0.0012 18.8 0.2 1.4 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_2 PF03446.15 gi|145591158|ref|YP_001153160.1| - 0.00094 19.4 0.0 0.0019 18.4 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.21 gi|145591158|ref|YP_001153160.1| - 0.0016 17.8 2.9 0.0041 16.5 0.8 2.1 1 1 1 2 2 2 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|145591158|ref|YP_001153160.1| - 0.0053 17.0 0.1 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|145591158|ref|YP_001153160.1| - 0.0061 16.8 0.1 0.017 15.4 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.10 gi|145591158|ref|YP_001153160.1| - 0.0072 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 KR domain 2-Hacid_dh_C PF02826.19 gi|145591158|ref|YP_001153160.1| - 0.0081 15.5 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|145591158|ref|YP_001153160.1| - 0.081 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family GlutR_dimer PF00745.20 gi|145591158|ref|YP_001153160.1| - 0.1 13.0 3.8 0.26 11.8 2.2 2.5 1 1 1 2 2 2 0 Glutamyl-tRNAGlu reductase, dimerisation domain IlvN PF07991.12 gi|145591158|ref|YP_001153160.1| - 0.16 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox_3 PF13738.6 gi|145591158|ref|YP_001153160.1| - 0.19 11.0 0.0 0.6 9.3 0.0 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DsbD PF02683.15 gi|145591159|ref|YP_001153161.1| - 3.9e-08 33.5 20.9 9.6e-07 28.9 20.9 2.2 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region ABC_tran PF00005.27 gi|145591161|ref|YP_001153163.1| - 5.4e-21 75.5 0.0 8.4e-21 74.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591161|ref|YP_001153163.1| - 7.6e-08 32.5 0.0 9e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145591161|ref|YP_001153163.1| - 0.0006 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|145591161|ref|YP_001153163.1| - 0.002 17.9 0.0 0.0028 17.4 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|145591161|ref|YP_001153163.1| - 0.0028 17.3 0.1 0.066 12.8 0.2 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA PF00004.29 gi|145591161|ref|YP_001153163.1| - 0.0031 18.0 0.1 0.0045 17.4 0.1 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|145591161|ref|YP_001153163.1| - 0.0034 17.9 0.0 0.005 17.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|145591161|ref|YP_001153163.1| - 0.0055 16.2 0.1 0.029 13.8 0.1 1.8 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|145591161|ref|YP_001153163.1| - 0.0061 15.9 0.1 0.009 15.3 0.1 1.1 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|145591161|ref|YP_001153163.1| - 0.0065 16.6 0.1 0.0093 16.1 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145591161|ref|YP_001153163.1| - 0.0084 15.8 0.0 0.02 14.6 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145591161|ref|YP_001153163.1| - 0.0085 16.5 0.1 0.015 15.7 0.1 1.4 2 0 0 2 2 1 1 AAA ATPase domain TsaE PF02367.17 gi|145591161|ref|YP_001153163.1| - 0.01 15.8 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|145591161|ref|YP_001153163.1| - 0.014 15.3 0.2 0.03 14.2 0.1 1.6 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|145591161|ref|YP_001153163.1| - 0.015 15.3 0.1 0.025 14.6 0.1 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|145591161|ref|YP_001153163.1| - 0.044 14.0 0.1 0.1 12.8 0.0 1.6 2 0 0 2 2 1 0 AAA domain NTPase_1 PF03266.15 gi|145591161|ref|YP_001153163.1| - 0.049 13.6 0.3 0.079 12.9 0.3 1.3 1 0 0 1 1 1 0 NTPase NB-ARC PF00931.22 gi|145591161|ref|YP_001153163.1| - 0.065 12.4 0.2 0.1 11.8 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.6 gi|145591161|ref|YP_001153163.1| - 0.077 13.3 0.2 0.23 11.8 0.3 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|145591161|ref|YP_001153163.1| - 0.084 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|145591161|ref|YP_001153163.1| - 0.087 12.6 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|145591161|ref|YP_001153163.1| - 0.089 12.7 0.1 0.14 12.0 0.1 1.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DLIC PF05783.11 gi|145591161|ref|YP_001153163.1| - 0.096 11.5 0.1 0.13 11.0 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) cobW PF02492.19 gi|145591161|ref|YP_001153163.1| - 0.1 12.2 0.3 0.16 11.6 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|145591161|ref|YP_001153163.1| - 0.11 12.1 0.1 0.19 11.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|145591161|ref|YP_001153163.1| - 0.13 9.8 0.2 0.17 9.4 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|145591161|ref|YP_001153163.1| - 0.18 11.7 0.1 0.28 11.1 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_13 PF13166.6 gi|145591161|ref|YP_001153163.1| - 0.22 10.1 0.0 0.28 9.8 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145591161|ref|YP_001153163.1| - 0.22 11.5 0.0 0.34 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|145591161|ref|YP_001153163.1| - 0.22 10.5 0.2 0.32 10.0 0.2 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_24 PF13479.6 gi|145591161|ref|YP_001153163.1| - 0.22 11.2 0.0 0.33 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|145591161|ref|YP_001153163.1| - 0.32 9.7 0.1 0.41 9.3 0.1 1.1 1 0 0 1 1 1 0 RNA12 protein CcmE PF03100.15 gi|145591162|ref|YP_001153164.1| - 0.0083 16.1 0.1 0.022 14.7 0.1 1.7 1 1 0 1 1 1 1 CcmE DUF1772 PF08592.11 gi|145591163|ref|YP_001153165.1| - 0.62 10.4 10.3 0.068 13.5 4.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) Wzy_C PF04932.15 gi|145591163|ref|YP_001153165.1| - 4.2 7.0 8.5 9.4 5.8 8.4 1.7 1 1 0 1 1 1 0 O-Antigen ligase PaREP1 PF05942.11 gi|145591164|ref|YP_001153166.1| - 4.1e-20 71.8 3.4 5.3e-20 71.5 3.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Caps_synth PF05704.12 gi|145591165|ref|YP_001153167.1| - 0.0093 15.4 0.0 0.013 14.9 0.0 1.2 1 0 0 1 1 1 1 Capsular polysaccharide synthesis protein Baculo_PEP_C PF04513.12 gi|145591165|ref|YP_001153167.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Gp-FAR-1 PF05823.12 gi|145591165|ref|YP_001153167.1| - 0.096 13.0 0.0 0.29 11.5 0.0 1.7 1 1 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) NrfD PF03916.14 gi|145591166|ref|YP_001153168.1| - 1.1e-23 84.4 34.0 1.5e-23 83.9 34.0 1.1 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.6 gi|145591167|ref|YP_001153169.1| - 1.9e-22 79.3 7.8 1.9e-22 79.3 7.8 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591167|ref|YP_001153169.1| - 5e-15 55.8 23.2 8.8e-08 32.6 7.3 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591167|ref|YP_001153169.1| - 3.8e-14 51.8 35.3 2.9e-07 30.0 3.0 4.8 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145591167|ref|YP_001153169.1| - 4.3e-14 51.9 33.9 1.8e-06 27.7 2.0 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145591167|ref|YP_001153169.1| - 9.7e-11 41.7 22.4 2.1e-05 24.6 7.6 3.0 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145591167|ref|YP_001153169.1| - 2.2e-10 40.5 26.6 8.5e-05 22.6 10.0 3.9 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591167|ref|YP_001153169.1| - 8.6e-10 38.1 30.4 0.0002 21.2 1.2 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.6 gi|145591167|ref|YP_001153169.1| - 1.4e-06 29.1 20.5 0.27 12.2 3.2 4.2 4 0 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|145591167|ref|YP_001153169.1| - 6.9e-06 26.2 35.2 0.0097 16.4 2.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|145591167|ref|YP_001153169.1| - 6.3e-05 23.3 25.9 0.0096 16.3 9.0 3.5 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591167|ref|YP_001153169.1| - 6.9e-05 23.3 23.2 0.073 13.6 4.5 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591167|ref|YP_001153169.1| - 0.00014 22.5 44.6 0.091 13.7 6.5 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591167|ref|YP_001153169.1| - 0.0013 18.8 34.9 0.12 12.5 11.0 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145591167|ref|YP_001153169.1| - 0.0019 18.4 23.0 0.13 12.5 0.3 4.0 2 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145591167|ref|YP_001153169.1| - 0.44 11.4 18.6 0.61 11.0 0.3 3.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|145591168|ref|YP_001153170.1| - 1.2e-51 176.1 0.0 6.1e-51 173.7 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|145591168|ref|YP_001153170.1| - 1.7e-10 40.9 0.0 3.3e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|145591168|ref|YP_001153170.1| - 0.038 14.0 0.0 0.085 12.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CDC48_N PF02359.18 gi|145591168|ref|YP_001153170.1| - 0.086 13.0 0.1 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain CBS PF00571.28 gi|145591169|ref|YP_001153171.1| - 5.1e-27 94.1 1.4 5.9e-14 52.3 0.4 2.1 2 0 0 2 2 2 2 CBS domain UBM PF14377.6 gi|145591170|ref|YP_001153172.1| - 0.44 10.1 2.2 1.2 8.7 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin binding region DUF2795 PF11387.8 gi|145591171|ref|YP_001153173.1| - 0.097 12.9 0.2 16 5.8 0.1 3.3 4 1 0 4 4 4 0 Protein of unknown function (DUF2795) Polbeta PF18765.1 gi|145591173|ref|YP_001153175.1| - 4.2e-11 42.8 0.0 5.9e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145591173|ref|YP_001153175.1| - 0.00038 20.7 0.2 0.00061 20.0 0.2 1.6 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|145591174|ref|YP_001153176.1| - 1.3e-14 54.1 0.0 1.6e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 ATPase_2 PF01637.18 gi|145591175|ref|YP_001153177.1| - 3.2e-09 37.1 0.0 3.6e-09 36.9 0.0 1.0 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|145591175|ref|YP_001153177.1| - 0.0039 17.6 0.0 0.0039 17.6 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|145591175|ref|YP_001153177.1| - 0.078 13.4 0.1 0.084 13.3 0.1 1.2 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|145591175|ref|YP_001153177.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 NACHT domain Adeno_IVa2 PF02456.15 gi|145591175|ref|YP_001153177.1| - 0.16 10.8 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein CBS PF00571.28 gi|145591177|ref|YP_001153179.1| - 7.1e-35 119.3 5.9 3.7e-13 49.7 1.8 4.4 4 0 0 4 4 4 4 CBS domain Sugar_tr PF00083.24 gi|145591177|ref|YP_001153179.1| - 7e-22 77.9 29.8 6.2e-15 55.0 14.7 2.1 2 0 0 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|145591177|ref|YP_001153179.1| - 2e-21 76.3 63.3 5.4e-13 48.6 35.4 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|145591177|ref|YP_001153179.1| - 0.094 11.0 1.7 0.17 10.1 1.7 1.3 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family AMP-binding PF00501.28 gi|145591178|ref|YP_001153180.1| - 2.9e-95 319.4 0.0 3.4e-95 319.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|145591178|ref|YP_001153180.1| - 1.6e-29 102.7 1.3 1.6e-29 102.7 1.3 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|145591178|ref|YP_001153180.1| - 5.8e-22 77.4 1.7 1.9e-21 75.7 1.7 2.0 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Homoserine_dh PF00742.19 gi|145591179|ref|YP_001153181.1| - 6.3e-33 114.1 0.0 3.2e-32 111.8 0.0 1.9 1 1 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|145591179|ref|YP_001153181.1| - 4.8e-05 23.2 0.0 8.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|145591179|ref|YP_001153181.1| - 0.00016 22.3 0.0 0.00038 21.1 0.0 1.6 1 1 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|145591179|ref|YP_001153181.1| - 0.065 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|145591179|ref|YP_001153181.1| - 0.13 12.5 0.1 1.2 9.4 0.1 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PaREP1 PF05942.11 gi|145591180|ref|YP_001153182.1| - 1.2e-26 92.8 0.7 1.5e-26 92.6 0.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Rubredoxin_2 PF18073.1 gi|145591181|ref|YP_001153183.1| - 0.0095 15.6 11.1 0.031 14.0 1.1 3.2 3 0 0 3 3 3 1 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|145591181|ref|YP_001153183.1| - 0.025 14.6 5.2 0.025 14.6 5.2 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin PF00301.20 gi|145591181|ref|YP_001153183.1| - 0.037 14.1 6.4 0.31 11.1 0.5 3.1 3 0 0 3 3 3 0 Rubredoxin Elf1 PF05129.13 gi|145591181|ref|YP_001153183.1| - 0.078 13.0 2.5 1.9 8.6 0.1 2.6 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like Ribosomal_S14 PF00253.21 gi|145591181|ref|YP_001153183.1| - 0.11 12.3 0.1 0.3 10.9 0.1 1.8 1 0 0 1 1 1 0 Ribosomal protein S14p/S29e DZR PF12773.7 gi|145591181|ref|YP_001153183.1| - 0.13 12.4 3.6 20 5.3 5.0 2.9 1 1 1 2 2 2 0 Double zinc ribbon zf-H2C2_2 PF13465.6 gi|145591181|ref|YP_001153183.1| - 0.17 12.4 4.0 1.3 9.6 0.2 2.9 3 0 0 3 3 3 0 Zinc-finger double domain CpXC PF14353.6 gi|145591181|ref|YP_001153183.1| - 0.36 10.9 3.7 20 5.3 0.0 3.4 3 1 0 3 3 3 0 CpXC protein DNA_RNApol_7kD PF03604.13 gi|145591181|ref|YP_001153183.1| - 1.5 8.6 0.0 1.5 8.6 0.0 4.3 5 1 0 5 5 5 0 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|145591181|ref|YP_001153183.1| - 2.4 8.2 8.0 6.9 6.7 2.6 3.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|145591181|ref|YP_001153183.1| - 3.1 7.8 12.8 3 7.8 2.5 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.11 gi|145591181|ref|YP_001153183.1| - 4.8 7.2 6.3 1 9.3 0.8 2.4 1 1 0 2 2 2 0 Putative transposase DNA-binding domain TFIIS_C PF01096.18 gi|145591181|ref|YP_001153183.1| - 5.1 7.0 7.2 5.2 7.0 0.1 3.6 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) zf-HIT PF04438.16 gi|145591181|ref|YP_001153183.1| - 7.5 6.5 11.2 14 5.7 0.8 3.4 3 0 0 3 3 3 0 HIT zinc finger Ni_hydr_CYTB PF01292.20 gi|145591182|ref|YP_001153184.1| - 3.1e-16 59.5 11.7 3.5e-16 59.3 11.7 1.0 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 SUR7 PF06687.12 gi|145591182|ref|YP_001153184.1| - 0.019 14.6 5.1 8.8 5.9 5.2 3.0 1 1 0 1 1 1 0 SUR7/PalI family DUF4225 PF13988.6 gi|145591182|ref|YP_001153184.1| - 0.084 12.4 0.4 11 5.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) YpmT PF17431.2 gi|145591182|ref|YP_001153184.1| - 0.085 12.9 2.1 5.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized YmpT-like HPP PF04982.13 gi|145591182|ref|YP_001153184.1| - 0.16 12.1 4.6 0.13 12.4 0.3 2.4 2 0 0 2 2 2 0 HPP family DUF4405 PF14358.6 gi|145591182|ref|YP_001153184.1| - 0.24 12.0 20.4 1.1 9.9 10.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) MNSV_P7B PF06692.11 gi|145591182|ref|YP_001153184.1| - 0.85 9.7 2.7 15 5.6 1.1 2.6 2 0 0 2 2 2 0 Melon necrotic spot virus P7B protein DUF2754 PF10953.8 gi|145591182|ref|YP_001153184.1| - 7.2 6.9 7.0 3.1 8.1 0.6 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2754) Fer4_11 PF13247.6 gi|145591183|ref|YP_001153185.1| - 3.1e-23 81.8 9.2 3.1e-23 81.8 9.2 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591183|ref|YP_001153185.1| - 1.7e-15 57.3 20.9 8.2e-08 32.7 2.3 4.1 2 2 3 5 5 5 5 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591183|ref|YP_001153185.1| - 2.9e-13 49.0 44.1 1.3e-07 31.2 5.7 5.2 6 0 0 6 6 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145591183|ref|YP_001153185.1| - 4.6e-13 49.1 19.9 8.1e-07 29.1 7.5 3.2 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145591183|ref|YP_001153185.1| - 8.3e-12 45.0 25.4 2.6e-07 30.7 10.0 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591183|ref|YP_001153185.1| - 4.7e-11 42.3 39.6 7.7e-06 25.8 4.7 4.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|145591183|ref|YP_001153185.1| - 4.2e-10 39.1 36.0 2.3e-05 24.2 3.0 4.5 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145591183|ref|YP_001153185.1| - 5.9e-07 30.0 40.6 0.049 14.6 3.8 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591183|ref|YP_001153185.1| - 6e-07 29.5 28.4 1.7e-05 24.8 8.9 3.4 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145591183|ref|YP_001153185.1| - 7.3e-07 29.6 22.0 4.2e-05 23.9 1.7 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591183|ref|YP_001153185.1| - 1.2e-06 29.4 24.2 0.42 11.6 0.0 4.8 3 1 2 5 5 5 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|145591183|ref|YP_001153185.1| - 1.3e-05 25.3 34.6 0.0096 16.4 3.6 4.5 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145591183|ref|YP_001153185.1| - 0.00015 22.4 25.5 0.056 14.2 0.7 4.3 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|145591183|ref|YP_001153185.1| - 0.0019 18.7 23.8 1.5 9.4 0.2 4.4 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591183|ref|YP_001153185.1| - 0.0064 17.0 27.8 0.065 13.8 1.1 4.5 3 1 1 4 4 4 2 4Fe-4S single cluster domain of Ferredoxin I CEND1 PF15677.5 gi|145591183|ref|YP_001153185.1| - 0.14 12.7 0.0 0.22 12.1 0.0 1.3 1 0 0 1 1 1 0 Cell cycle exit and neuronal differentiation protein 1 Fer4_22 PF17179.4 gi|145591183|ref|YP_001153185.1| - 0.72 10.7 19.6 0.29 12.0 2.5 4.0 3 1 1 4 4 4 0 4Fe-4S dicluster domain SCIFF PF13165.6 gi|145591183|ref|YP_001153185.1| - 7.2 6.6 12.1 4.5 7.3 0.6 3.1 3 0 0 3 3 3 0 Six-cysteine peptide SCIFF Molybdopterin PF00384.22 gi|145591184|ref|YP_001153186.1| - 4.7e-46 157.6 0.0 6.6e-44 150.5 0.0 3.2 2 1 0 2 2 2 1 Molybdopterin oxidoreductase Molybdop_Fe4S4 PF04879.16 gi|145591184|ref|YP_001153186.1| - 3e-14 52.7 0.1 6e-14 51.8 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Molydop_binding PF01568.21 gi|145591184|ref|YP_001153186.1| - 3e-12 46.5 0.0 7.4e-12 45.3 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain MazE_antitoxin PF04014.18 gi|145591184|ref|YP_001153186.1| - 0.00019 21.3 0.0 0.0085 16.0 0.0 2.9 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin FdhD-NarQ PF02634.15 gi|145591185|ref|YP_001153187.1| - 3.4e-27 95.7 0.1 8.1e-27 94.4 0.1 1.5 1 1 0 1 1 1 1 FdhD/NarQ family TrmB PF01978.19 gi|145591186|ref|YP_001153188.1| - 1.7e-06 27.8 0.0 3.2e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|145591186|ref|YP_001153188.1| - 0.004 17.0 0.0 0.0065 16.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|145591186|ref|YP_001153188.1| - 0.15 11.9 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Semialdhyde_dh PF01118.24 gi|145591187|ref|YP_001153189.1| - 1.2e-35 122.5 0.0 2.1e-35 121.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|145591187|ref|YP_001153189.1| - 9.5e-33 113.8 0.0 1.5e-32 113.2 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DXP_reductoisom PF02670.16 gi|145591187|ref|YP_001153189.1| - 0.0086 16.8 0.1 0.021 15.5 0.0 1.7 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Epimerase PF01370.21 gi|145591187|ref|YP_001153189.1| - 0.024 14.1 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family DapB_N PF01113.20 gi|145591187|ref|YP_001153189.1| - 0.024 14.7 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.22 gi|145591187|ref|YP_001153189.1| - 0.095 13.5 0.0 0.23 12.3 0.0 1.7 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.28 gi|145591188|ref|YP_001153190.1| - 5.8e-36 124.3 0.0 7.3e-36 124.0 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family PALP PF00291.25 gi|145591189|ref|YP_001153191.1| - 3e-69 233.7 3.2 3.5e-69 233.5 3.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Pirin_C_2 PF17954.1 gi|145591189|ref|YP_001153191.1| - 0.15 12.3 0.3 3.7 7.8 0.0 2.7 2 1 1 3 3 3 0 Quercetinase C-terminal cupin domain ABC_tran PF00005.27 gi|145591191|ref|YP_001153193.1| - 2.4e-33 115.5 0.0 3.2e-33 115.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|145591191|ref|YP_001153193.1| - 1.1e-18 67.5 0.1 1.8e-18 66.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|145591191|ref|YP_001153193.1| - 7.2e-09 35.9 3.7 3.2e-06 27.2 0.7 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|145591191|ref|YP_001153193.1| - 0.0013 19.0 0.7 0.0084 16.4 0.7 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|145591191|ref|YP_001153193.1| - 0.0021 17.6 0.0 0.02 14.3 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|145591191|ref|YP_001153193.1| - 0.0078 15.6 0.5 0.071 12.5 0.1 2.1 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|145591191|ref|YP_001153193.1| - 0.011 16.2 0.2 0.025 15.0 0.2 1.7 2 1 0 2 2 1 0 AAA ATPase domain DEAD PF00270.29 gi|145591191|ref|YP_001153193.1| - 0.023 14.5 1.0 0.9 9.3 1.0 2.2 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|145591191|ref|YP_001153193.1| - 0.034 13.7 0.1 6.1 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|145591191|ref|YP_001153193.1| - 0.044 13.8 0.4 0.34 10.9 0.2 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|145591191|ref|YP_001153193.1| - 0.055 13.9 0.1 0.26 11.7 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|145591191|ref|YP_001153193.1| - 0.096 12.8 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|145591191|ref|YP_001153193.1| - 0.1 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.26 gi|145591191|ref|YP_001153193.1| - 0.17 11.6 0.1 4.4 7.0 0.0 2.4 3 0 0 3 3 3 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|145591192|ref|YP_001153194.1| - 2.1e-26 93.1 0.0 2.8e-26 92.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|145591192|ref|YP_001153194.1| - 3.2e-18 66.0 0.1 5.7e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|145591192|ref|YP_001153194.1| - 1.3e-06 28.4 0.1 0.00052 19.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591192|ref|YP_001153194.1| - 0.00032 20.2 0.2 0.005 16.3 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|145591192|ref|YP_001153194.1| - 0.0019 18.4 0.2 0.0049 17.0 0.1 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|145591192|ref|YP_001153194.1| - 0.002 18.4 0.0 0.085 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|145591192|ref|YP_001153194.1| - 0.0043 16.8 0.0 0.0075 16.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|145591192|ref|YP_001153194.1| - 0.0044 15.9 0.1 0.023 13.5 0.1 1.9 1 1 0 1 1 1 1 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.18 gi|145591192|ref|YP_001153194.1| - 0.023 14.1 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family TniB PF05621.11 gi|145591192|ref|YP_001153194.1| - 0.035 13.5 0.2 0.82 9.0 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_23 PF13476.6 gi|145591192|ref|YP_001153194.1| - 0.053 14.0 0.0 0.093 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145591192|ref|YP_001153194.1| - 0.091 13.1 0.1 0.24 11.8 0.2 1.9 2 1 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.25 gi|145591192|ref|YP_001153194.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.7 gi|145591192|ref|YP_001153194.1| - 0.18 10.7 0.0 0.26 10.2 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_15 PF13175.6 gi|145591192|ref|YP_001153194.1| - 0.26 11.0 0.0 5.9 6.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|145591193|ref|YP_001153195.1| - 1.5e-29 103.1 15.2 1.5e-29 103.1 15.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|145591193|ref|YP_001153195.1| - 1.9e-05 24.5 0.1 1.9e-05 24.5 0.1 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|145591194|ref|YP_001153196.1| - 3.4e-39 134.5 14.0 3.4e-39 134.5 14.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|145591195|ref|YP_001153197.1| - 5.1e-56 190.3 18.1 7.2e-41 140.4 2.4 3.0 3 0 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle PsbN PF02468.15 gi|145591195|ref|YP_001153197.1| - 0.073 12.9 1.8 0.17 11.8 1.8 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) FAP PF07174.11 gi|145591195|ref|YP_001153197.1| - 0.23 10.9 13.9 0.37 10.2 13.9 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) MGC-24 PF05283.11 gi|145591195|ref|YP_001153197.1| - 1.2 9.5 2.9 2.3 8.7 2.9 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Semialdhyde_dh PF01118.24 gi|145591196|ref|YP_001153198.1| - 5.9e-32 110.6 0.0 1.1e-31 109.8 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|145591196|ref|YP_001153198.1| - 5.2e-11 42.9 0.0 2.2e-10 40.9 0.0 1.8 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Epimerase PF01370.21 gi|145591196|ref|YP_001153198.1| - 0.011 15.3 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|145591196|ref|YP_001153198.1| - 0.078 13.2 0.0 0.12 12.7 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain DapB_N PF01113.20 gi|145591196|ref|YP_001153198.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.28 gi|145591197|ref|YP_001153199.1| - 5.2e-35 121.2 1.9 6.2e-35 120.9 1.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family HypA PF01155.19 gi|145591198|ref|YP_001153200.1| - 2.3e-06 27.6 0.3 2.4e-06 27.5 0.3 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|145591198|ref|YP_001153200.1| - 4.3e-06 26.7 0.3 5.9e-06 26.3 0.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|145591198|ref|YP_001153200.1| - 3e-05 23.8 1.2 0.051 13.5 0.0 2.2 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145591198|ref|YP_001153200.1| - 0.00023 20.6 3.8 0.00054 19.4 3.9 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_5 PF13719.6 gi|145591198|ref|YP_001153200.1| - 0.002 17.8 1.7 0.98 9.2 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-CHCC PF10276.9 gi|145591198|ref|YP_001153200.1| - 0.0021 18.0 0.4 1.1 9.3 0.0 2.2 2 0 0 2 2 2 1 Zinc-finger domain Prok-RING_1 PF14446.6 gi|145591198|ref|YP_001153200.1| - 0.0024 17.7 3.0 0.0059 16.5 3.0 1.6 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-CSL PF05207.13 gi|145591198|ref|YP_001153200.1| - 0.0027 17.4 1.1 0.0034 17.1 0.3 1.6 2 0 0 2 2 2 1 CSL zinc finger zf-IS66 PF13005.7 gi|145591198|ref|YP_001153200.1| - 0.0037 17.6 0.5 0.39 11.1 0.0 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|145591198|ref|YP_001153200.1| - 0.0073 15.7 0.6 0.84 9.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-HYPF PF07503.12 gi|145591198|ref|YP_001153200.1| - 0.0095 15.7 4.2 0.19 11.5 4.3 2.1 1 1 0 1 1 1 1 HypF finger DZR PF12773.7 gi|145591198|ref|YP_001153200.1| - 0.014 15.4 0.3 0.019 15.0 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1451 PF07295.11 gi|145591198|ref|YP_001153200.1| - 0.022 14.8 0.3 0.029 14.4 0.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain Elf1 PF05129.13 gi|145591198|ref|YP_001153200.1| - 0.026 14.6 0.5 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-C2H2_3 PF13878.6 gi|145591198|ref|YP_001153200.1| - 0.029 14.2 3.3 1.5 8.7 0.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO A2L_zn_ribbon PF08792.10 gi|145591198|ref|YP_001153200.1| - 0.04 13.7 1.5 0.25 11.1 1.5 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.6 gi|145591198|ref|YP_001153200.1| - 0.069 13.1 1.0 6 6.9 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.12 gi|145591198|ref|YP_001153200.1| - 0.071 13.1 1.1 0.11 12.4 1.1 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cys_rich_CPXG PF14255.6 gi|145591198|ref|YP_001153200.1| - 0.072 13.0 1.4 3 7.8 1.4 2.2 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-RING_7 PF02591.15 gi|145591198|ref|YP_001153200.1| - 0.072 13.3 1.2 1 9.6 0.1 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-Sec23_Sec24 PF04810.15 gi|145591198|ref|YP_001153200.1| - 0.08 13.0 0.1 2.2 8.4 0.0 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger UPF0547 PF10571.9 gi|145591198|ref|YP_001153200.1| - 0.082 13.0 1.5 3.7 7.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 NRDD PF13597.6 gi|145591198|ref|YP_001153200.1| - 0.082 11.7 0.2 0.083 11.7 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RNA_POL_M_15KD PF02150.16 gi|145591198|ref|YP_001153200.1| - 0.084 12.8 0.3 3.2 7.7 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|145591198|ref|YP_001153200.1| - 0.11 12.8 1.0 2 8.8 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_RNApol_7kD PF03604.13 gi|145591198|ref|YP_001153200.1| - 0.12 12.0 2.6 2.6 7.8 3.1 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF983 PF06170.12 gi|145591198|ref|YP_001153200.1| - 0.16 12.4 1.2 4.5 7.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) CpXC PF14353.6 gi|145591198|ref|YP_001153200.1| - 0.16 12.0 1.8 4.8 7.3 1.8 2.0 1 1 1 2 2 2 0 CpXC protein TFIIS_C PF01096.18 gi|145591198|ref|YP_001153200.1| - 0.19 11.6 2.0 12 5.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.6 gi|145591198|ref|YP_001153200.1| - 0.19 12.6 0.7 8.6 7.5 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|145591198|ref|YP_001153200.1| - 0.2 12.2 0.8 8.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf_UBZ PF18439.1 gi|145591198|ref|YP_001153200.1| - 0.3 10.7 0.7 16 5.2 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_L32p PF01783.23 gi|145591198|ref|YP_001153200.1| - 0.35 11.2 1.0 10 6.5 0.1 2.1 1 1 1 2 2 2 0 Ribosomal L32p protein family zf-C2H2_6 PF13912.6 gi|145591198|ref|YP_001153200.1| - 0.44 10.6 2.5 17 5.5 0.7 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-HIT PF04438.16 gi|145591198|ref|YP_001153200.1| - 1.2 9.0 5.9 4.1 7.4 0.9 2.1 2 0 0 2 2 2 0 HIT zinc finger Arginosuc_synth PF00764.19 gi|145591199|ref|YP_001153201.1| - 1.2e-121 406.6 0.0 1.5e-121 406.4 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase zf-ribbon_3 PF13248.6 gi|145591200|ref|YP_001153202.1| - 4e-05 22.8 6.2 0.033 13.6 1.1 2.4 2 1 0 2 2 2 2 zinc-ribbon domain zf_UBZ PF18439.1 gi|145591200|ref|YP_001153202.1| - 0.0034 16.9 6.0 0.26 10.9 0.6 2.3 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|145591200|ref|YP_001153202.1| - 0.0067 16.1 8.9 0.059 13.1 0.4 2.8 2 1 1 3 3 3 2 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|145591200|ref|YP_001153202.1| - 0.009 15.7 2.9 0.99 9.1 0.1 2.5 2 1 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf_Rg PF17915.1 gi|145591200|ref|YP_001153202.1| - 0.01 15.2 3.8 0.32 10.4 0.1 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger LIM PF00412.22 gi|145591200|ref|YP_001153202.1| - 0.015 15.5 2.2 0.016 15.4 2.2 1.1 1 0 0 1 1 1 0 LIM domain zf-FPG_IleRS PF06827.14 gi|145591200|ref|YP_001153202.1| - 0.029 14.2 6.9 0.57 10.1 1.7 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Sgf11 PF08209.11 gi|145591200|ref|YP_001153202.1| - 0.04 13.5 0.4 0.04 13.5 0.4 3.0 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) DZR PF12773.7 gi|145591200|ref|YP_001153202.1| - 0.041 13.9 6.9 0.19 11.8 6.9 1.9 1 1 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|145591200|ref|YP_001153202.1| - 0.047 13.8 3.2 1.3 9.2 0.2 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Acetone_carb_G PF08882.11 gi|145591200|ref|YP_001153202.1| - 0.068 13.3 0.9 0.068 13.3 0.9 1.6 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-TFIIB PF13453.6 gi|145591200|ref|YP_001153202.1| - 0.08 12.3 6.5 0.79 9.1 0.2 2.2 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc-ribbons_6 PF07191.12 gi|145591200|ref|YP_001153202.1| - 0.16 12.0 5.7 0.54 10.3 5.7 1.8 1 1 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|145591200|ref|YP_001153202.1| - 0.17 11.8 4.8 3.2 7.7 1.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|145591200|ref|YP_001153202.1| - 0.46 10.6 9.4 31 4.8 9.4 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|145591200|ref|YP_001153202.1| - 0.6 10.4 6.8 5.9 7.2 1.4 2.2 1 1 1 2 2 2 0 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|145591200|ref|YP_001153202.1| - 0.65 9.6 10.6 1.6 8.3 2.3 2.3 2 1 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|145591200|ref|YP_001153202.1| - 1.1 9.0 8.7 7.9 6.3 8.7 2.0 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_Tnp_IS1595 PF12760.7 gi|145591200|ref|YP_001153202.1| - 1.3 9.0 12.0 6.9 6.7 1.8 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2688 PF10892.8 gi|145591200|ref|YP_001153202.1| - 1.4 8.4 6.8 0.23 10.9 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Prok-RING_1 PF14446.6 gi|145591200|ref|YP_001153202.1| - 1.5 8.8 9.2 3.5 7.6 1.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Mu-like_Com PF10122.9 gi|145591200|ref|YP_001153202.1| - 1.6 8.2 8.4 8 6.0 8.4 2.0 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-ACC PF17848.1 gi|145591200|ref|YP_001153202.1| - 1.8 8.7 10.8 0.77 9.9 0.8 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_C2H2_10 PF18414.1 gi|145591200|ref|YP_001153202.1| - 1.9 8.1 6.8 0.77 9.3 0.6 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger FYDLN_acid PF09538.10 gi|145591200|ref|YP_001153202.1| - 2.1 9.1 5.0 3.3 8.4 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) E7 PF00527.18 gi|145591200|ref|YP_001153202.1| - 4.4 7.6 8.2 8.9 6.6 3.0 2.0 1 1 1 2 2 2 0 E7 protein, Early protein YacG PF03884.14 gi|145591200|ref|YP_001153202.1| - 7.3 6.4 11.2 29 4.5 0.7 2.2 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Lyase_1 PF00206.20 gi|145591201|ref|YP_001153203.1| - 3.1e-36 125.3 0.0 4.3e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 Lyase DUF2680 PF10925.8 gi|145591201|ref|YP_001153203.1| - 0.15 12.0 0.3 0.33 11.0 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2680) TUDOR_5 PF18359.1 gi|145591202|ref|YP_001153204.1| - 0.098 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Histone methyltransferase Tudor domain 1 DUF998 PF06197.13 gi|145591203|ref|YP_001153205.1| - 6e-28 97.7 19.0 6.7e-28 97.5 19.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MerC PF03203.14 gi|145591203|ref|YP_001153205.1| - 1 9.8 10.3 0.17 12.4 4.6 2.2 1 1 1 2 2 2 0 MerC mercury resistance protein ABC_tran PF00005.27 gi|145591204|ref|YP_001153206.1| - 4.9e-34 117.8 0.0 6.9e-34 117.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591204|ref|YP_001153206.1| - 3.7e-11 43.4 2.8 1.1e-05 25.4 0.3 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|145591204|ref|YP_001153206.1| - 1.3e-08 34.9 0.9 3.9e-08 33.3 0.2 2.2 3 0 0 3 3 2 1 TOBE domain AAA_29 PF13555.6 gi|145591204|ref|YP_001153206.1| - 1.2e-05 24.9 0.1 2.2e-05 24.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|145591204|ref|YP_001153206.1| - 0.0001 22.7 0.2 0.00016 22.1 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|145591204|ref|YP_001153206.1| - 0.00016 21.9 1.3 0.0015 18.8 1.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|145591204|ref|YP_001153206.1| - 0.00056 19.9 0.5 0.0044 17.0 0.1 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|145591204|ref|YP_001153206.1| - 0.0014 18.1 0.0 0.0021 17.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI RsgA_GTPase PF03193.16 gi|145591204|ref|YP_001153206.1| - 0.0081 16.1 0.2 0.015 15.2 0.2 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|145591204|ref|YP_001153206.1| - 0.015 15.0 0.1 0.025 14.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145591204|ref|YP_001153206.1| - 0.017 14.9 0.2 0.043 13.6 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|145591204|ref|YP_001153206.1| - 0.018 15.3 0.1 0.32 11.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|145591204|ref|YP_001153206.1| - 0.03 14.2 0.2 0.048 13.6 0.2 1.3 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.6 gi|145591204|ref|YP_001153206.1| - 0.066 13.7 0.1 0.13 12.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145591204|ref|YP_001153206.1| - 0.083 13.3 0.1 0.44 11.0 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|145591204|ref|YP_001153206.1| - 0.092 12.2 0.1 4.9 6.5 0.1 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain TniB PF05621.11 gi|145591204|ref|YP_001153206.1| - 0.11 11.9 0.2 2.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein G-alpha PF00503.20 gi|145591204|ref|YP_001153206.1| - 0.12 11.5 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.6 gi|145591204|ref|YP_001153206.1| - 0.13 12.5 0.3 0.26 11.4 0.1 1.6 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|145591204|ref|YP_001153206.1| - 0.14 12.5 0.2 0.58 10.5 0.2 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|145591204|ref|YP_001153206.1| - 0.17 10.9 0.0 0.24 10.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|145591204|ref|YP_001153206.1| - 0.24 11.8 0.0 0.39 11.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Adeno_IVa2 PF02456.15 gi|145591204|ref|YP_001153206.1| - 0.27 10.0 0.1 0.42 9.3 0.1 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|145591205|ref|YP_001153207.1| - 6.6e-12 45.5 28.5 6.3e-11 42.3 28.5 2.1 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|145591206|ref|YP_001153208.1| - 9.4e-09 35.3 14.9 9.4e-09 35.3 14.9 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2070 PF09843.9 gi|145591206|ref|YP_001153208.1| - 1 7.6 20.2 0.11 10.8 11.4 2.1 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) Succ_CoA_lig PF13607.6 gi|145591207|ref|YP_001153209.1| - 1.1e-49 167.8 6.7 4.5e-48 162.6 0.7 3.5 4 0 0 4 4 4 2 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|145591207|ref|YP_001153209.1| - 6.3e-24 84.7 1.7 6.7e-23 81.4 0.1 2.9 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|145591207|ref|YP_001153209.1| - 2.9e-06 27.9 1.0 1.1e-05 26.1 0.1 2.3 2 0 0 2 2 2 1 CoA binding domain Thioredoxin_2 PF13098.6 gi|145591208|ref|YP_001153210.1| - 0.029 14.8 0.1 0.097 13.1 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|145591208|ref|YP_001153210.1| - 0.051 13.7 0.0 0.099 12.8 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin DSBA PF01323.20 gi|145591208|ref|YP_001153210.1| - 0.2 11.4 0.5 0.55 10.0 0.5 1.7 1 0 0 1 1 1 0 DSBA-like thioredoxin domain CBS PF00571.28 gi|145591209|ref|YP_001153211.1| - 8.1e-26 90.2 0.6 1.3e-11 44.7 0.0 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|145591209|ref|YP_001153211.1| - 0.002 18.2 2.9 0.058 13.5 0.2 2.2 1 1 1 2 2 2 2 Toluene-4-monooxygenase system protein B (TmoB) IF3_N PF05198.16 gi|145591209|ref|YP_001153211.1| - 0.056 13.7 0.7 1.5 9.1 0.1 2.4 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain VWA_2 PF13519.6 gi|145591210|ref|YP_001153212.1| - 1.3e-05 25.8 0.7 8.9e-05 23.1 0.1 2.6 3 0 0 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|145591210|ref|YP_001153212.1| - 2.8e-05 23.6 0.6 0.00016 21.2 0.6 2.0 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.28 gi|145591210|ref|YP_001153212.1| - 0.0003 21.1 1.6 0.0098 16.2 0.3 2.9 2 2 1 3 3 3 1 von Willebrand factor type A domain DUF885 PF05960.11 gi|145591210|ref|YP_001153212.1| - 0.069 12.8 0.3 0.087 12.5 0.3 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DUF5583 PF17821.1 gi|145591210|ref|YP_001153212.1| - 0.091 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5583) AAA_5 PF07728.14 gi|145591211|ref|YP_001153213.1| - 4e-26 91.6 0.0 1.2e-25 90.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|145591211|ref|YP_001153213.1| - 2.8e-06 27.8 0.1 3.3e-05 24.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|145591211|ref|YP_001153213.1| - 0.00072 19.4 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145591211|ref|YP_001153213.1| - 0.00082 19.8 0.0 0.0022 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|145591211|ref|YP_001153213.1| - 0.0013 18.5 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|145591211|ref|YP_001153213.1| - 0.0029 17.0 0.0 0.0083 15.5 0.0 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|145591211|ref|YP_001153213.1| - 0.014 14.5 0.0 0.3 10.1 0.0 2.2 2 0 0 2 2 2 0 MCM P-loop domain RuvB_N PF05496.12 gi|145591211|ref|YP_001153213.1| - 0.029 14.1 1.6 5.5 6.7 0.2 3.0 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|145591211|ref|YP_001153213.1| - 0.041 13.4 0.0 0.088 12.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|145591211|ref|YP_001153213.1| - 0.081 12.6 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|145591211|ref|YP_001153213.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|145591211|ref|YP_001153213.1| - 0.13 12.2 0.3 3.5 7.5 0.0 2.6 3 0 0 3 3 3 0 NTPase NurA PF09376.10 gi|145591212|ref|YP_001153214.1| - 2.1e-47 161.9 0.2 2.6e-47 161.6 0.2 1.1 1 0 0 1 1 1 1 NurA domain WD40_like PF17005.5 gi|145591212|ref|YP_001153214.1| - 0.0095 15.3 0.0 0.13 11.6 0.0 2.3 2 0 0 2 2 2 1 WD40-like domain DUF5022 PF16425.5 gi|145591212|ref|YP_001153214.1| - 0.047 13.1 0.0 0.075 12.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5022) DUF87 PF01935.17 gi|145591213|ref|YP_001153215.1| - 1.3e-39 136.6 0.0 1.9e-39 136.1 0.0 1.2 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|145591213|ref|YP_001153215.1| - 2.2e-11 43.8 1.1 1.7e-10 40.9 0.5 2.7 3 0 0 3 3 3 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|145591213|ref|YP_001153215.1| - 1.5e-07 30.7 0.0 4.6e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|145591213|ref|YP_001153215.1| - 3.9e-05 22.4 0.0 0.18 10.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) T4SS-DNA_transf PF02534.14 gi|145591213|ref|YP_001153215.1| - 4e-05 22.6 0.1 0.00014 20.9 0.0 1.7 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.15 gi|145591213|ref|YP_001153215.1| - 4.5e-05 23.5 0.0 0.001 19.1 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|145591213|ref|YP_001153215.1| - 0.0017 17.8 0.0 0.45 9.8 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|145591213|ref|YP_001153215.1| - 0.0037 16.2 0.0 0.037 13.0 0.0 2.0 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.14 gi|145591213|ref|YP_001153215.1| - 0.013 15.4 0.1 0.047 13.6 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|145591213|ref|YP_001153215.1| - 0.035 14.4 0.0 1.6 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain CbiA PF01656.23 gi|145591213|ref|YP_001153215.1| - 0.11 12.5 0.0 0.34 11.0 0.0 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DEAD PF00270.29 gi|145591213|ref|YP_001153215.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_26 PF13500.6 gi|145591213|ref|YP_001153215.1| - 0.14 12.0 0.1 1.4 8.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain Metallophos PF00149.28 gi|145591214|ref|YP_001153216.1| - 5.1e-11 43.5 0.0 1.2e-10 42.3 0.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|145591214|ref|YP_001153216.1| - 1.1e-07 32.1 0.0 3.7e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain SMC_N PF02463.19 gi|145591215|ref|YP_001153217.1| - 4.2e-23 81.9 1.5 3e-11 43.2 0.4 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591215|ref|YP_001153217.1| - 4.5e-17 63.2 48.5 1.2e-07 32.5 48.5 4.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|145591215|ref|YP_001153217.1| - 3.3e-12 46.8 1.1 2.7e-07 30.6 0.0 3.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|145591215|ref|YP_001153217.1| - 1.5e-09 38.1 10.8 6.3e-06 26.2 2.3 3.3 2 2 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|145591215|ref|YP_001153217.1| - 4.4e-09 35.6 28.7 0.00041 19.1 9.8 3.7 2 1 2 4 4 4 3 AAA domain ABC_tran PF00005.27 gi|145591215|ref|YP_001153217.1| - 5.7e-08 33.4 1.1 0.0073 16.8 0.0 3.6 3 2 0 3 3 3 2 ABC transporter AAA_29 PF13555.6 gi|145591215|ref|YP_001153217.1| - 5.6e-07 29.2 0.0 9.4e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|145591215|ref|YP_001153217.1| - 0.0001 22.0 0.0 0.0001 22.0 0.0 4.7 4 1 2 6 6 6 1 AAA domain Syntaxin-6_N PF09177.11 gi|145591215|ref|YP_001153217.1| - 0.00037 21.0 33.7 0.09 13.3 5.7 6.0 2 2 2 4 4 4 1 Syntaxin 6, N-terminal Spc7 PF08317.11 gi|145591215|ref|YP_001153217.1| - 0.001 18.0 55.2 0.012 14.6 6.0 4.5 2 2 2 4 4 4 2 Spc7 kinetochore protein APG17 PF04108.12 gi|145591215|ref|YP_001153217.1| - 0.0055 15.9 29.5 0.029 13.5 7.4 4.1 4 1 0 4 4 4 2 Autophagy protein Apg17 AAA_16 PF13191.6 gi|145591215|ref|YP_001153217.1| - 0.0071 16.7 0.1 0.0071 16.7 0.1 4.8 2 2 1 3 3 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|145591215|ref|YP_001153217.1| - 0.0078 16.2 0.0 0.0078 16.2 0.0 3.0 3 1 0 3 3 2 1 ATPase domain predominantly from Archaea Fib_alpha PF08702.10 gi|145591215|ref|YP_001153217.1| - 0.011 15.9 4.1 0.021 15.0 2.5 4.2 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family SbcCD_C PF13558.6 gi|145591215|ref|YP_001153217.1| - 0.013 15.8 1.2 0.03 14.5 0.0 2.3 3 0 0 3 3 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|145591215|ref|YP_001153217.1| - 0.014 15.8 1.3 0.2 12.1 0.1 3.1 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) KxDL PF10241.9 gi|145591215|ref|YP_001153217.1| - 0.019 15.2 33.4 1.5 9.1 1.8 6.6 6 1 1 7 7 6 0 Uncharacterized conserved protein MukB PF04310.12 gi|145591215|ref|YP_001153217.1| - 0.022 14.5 5.7 0.29 10.9 0.0 3.5 3 0 0 3 3 3 0 MukB N-terminal Rad50_zn_hook PF04423.14 gi|145591215|ref|YP_001153217.1| - 0.023 14.5 0.1 0.023 14.5 0.1 6.2 7 0 0 7 7 5 0 Rad50 zinc hook motif Lebercilin PF15619.6 gi|145591215|ref|YP_001153217.1| - 0.023 14.3 64.0 0.02 14.6 7.8 5.2 3 1 0 4 4 4 0 Ciliary protein causing Leber congenital amaurosis disease DUF3584 PF12128.8 gi|145591215|ref|YP_001153217.1| - 0.03 11.9 40.7 0.78 7.2 13.5 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3584) AAA_24 PF13479.6 gi|145591215|ref|YP_001153217.1| - 0.056 13.2 0.3 1.5 8.5 0.1 2.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|145591215|ref|YP_001153217.1| - 0.069 13.5 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Prefoldin_2 PF01920.20 gi|145591215|ref|YP_001153217.1| - 0.072 13.1 0.2 0.072 13.1 0.2 6.8 5 2 1 7 7 7 0 Prefoldin subunit BORCS8 PF10167.9 gi|145591215|ref|YP_001153217.1| - 0.1 12.6 2.0 5.1 7.1 0.0 3.1 3 0 0 3 3 2 0 BLOC-1-related complex sub-unit 8 DNA_ligase_ZBD PF03119.16 gi|145591215|ref|YP_001153217.1| - 0.13 12.3 0.9 0.42 10.7 0.9 1.9 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF948 PF06103.11 gi|145591215|ref|YP_001153217.1| - 0.16 12.2 9.8 9.2 6.6 0.1 4.7 4 1 0 5 5 4 0 Bacterial protein of unknown function (DUF948) TMPIT PF07851.13 gi|145591215|ref|YP_001153217.1| - 0.18 11.0 22.4 1.5 8.0 4.4 4.2 2 2 2 4 4 4 0 TMPIT-like protein AAA_25 PF13481.6 gi|145591215|ref|YP_001153217.1| - 0.18 11.4 0.1 0.18 11.4 0.1 4.0 2 1 2 4 4 4 0 AAA domain DUF1664 PF07889.12 gi|145591215|ref|YP_001153217.1| - 0.22 11.6 19.4 4.2 7.4 1.1 5.3 3 2 2 5 5 4 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|145591215|ref|YP_001153217.1| - 0.23 10.5 37.5 0.13 11.3 9.7 4.1 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|145591215|ref|YP_001153217.1| - 0.26 9.4 36.2 0.22 9.6 10.8 3.2 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.12 gi|145591215|ref|YP_001153217.1| - 0.43 10.6 11.4 16 5.5 4.5 5.0 3 2 0 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|145591215|ref|YP_001153217.1| - 0.57 10.2 25.4 0.23 11.5 3.0 4.4 3 2 1 5 5 4 0 Laminin Domain II TPR_MLP1_2 PF07926.12 gi|145591215|ref|YP_001153217.1| - 0.65 10.1 57.2 0.18 11.9 0.9 5.3 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein Flagellin_C PF00700.21 gi|145591215|ref|YP_001153217.1| - 0.7 10.3 6.5 3.3 8.1 0.1 3.9 3 1 0 4 4 3 0 Bacterial flagellin C-terminal helical region Spectrin PF00435.21 gi|145591215|ref|YP_001153217.1| - 0.79 10.2 35.2 1.5 9.3 8.5 4.7 3 1 1 4 4 4 0 Spectrin repeat HOOK PF05622.12 gi|145591215|ref|YP_001153217.1| - 0.97 7.5 51.7 0.19 9.8 20.1 2.4 2 1 0 2 2 2 0 HOOK protein Exonuc_VII_L PF02601.15 gi|145591215|ref|YP_001153217.1| - 1 8.8 35.2 1.8e+04 -15.1 35.2 3.3 1 1 0 1 1 0 0 Exonuclease VII, large subunit KAR9 PF08580.10 gi|145591215|ref|YP_001153217.1| - 1.2 7.5 10.6 0.13 10.8 4.3 2.2 2 0 0 2 2 2 0 Yeast cortical protein KAR9 AAA_18 PF13238.6 gi|145591215|ref|YP_001153217.1| - 1.5 9.3 0.0 1.5 9.3 0.0 3.8 4 2 0 4 4 2 0 AAA domain FlaC_arch PF05377.11 gi|145591215|ref|YP_001153217.1| - 2 8.9 31.9 3.6 8.0 0.1 6.7 6 0 0 6 6 6 0 Flagella accessory protein C (FlaC) Helicase_IV_N PF12462.8 gi|145591215|ref|YP_001153217.1| - 2.6 8.0 6.8 4.6 7.2 0.9 2.6 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal AAA_22 PF13401.6 gi|145591215|ref|YP_001153217.1| - 2.8 8.2 0.0 2.8 8.2 0.0 4.6 4 2 0 5 5 3 0 AAA domain DASH_Dam1 PF08653.10 gi|145591215|ref|YP_001153217.1| - 4.8 7.0 6.0 37 4.2 0.2 4.7 5 0 0 5 5 5 0 DASH complex subunit Dam1 Nup54 PF13874.6 gi|145591215|ref|YP_001153217.1| - 5.5 7.1 41.5 0.54 10.4 0.1 4.3 2 2 1 3 3 2 0 Nucleoporin complex subunit 54 MscS_porin PF12795.7 gi|145591215|ref|YP_001153217.1| - 6.6 6.2 55.1 3.7 7.0 0.6 5.0 3 2 1 4 4 4 0 Mechanosensitive ion channel porin domain USP8_interact PF08941.10 gi|145591215|ref|YP_001153217.1| - 7.1 6.4 11.6 2.6 7.8 0.0 4.4 2 1 2 5 5 5 0 USP8 interacting Tropomyosin_1 PF12718.7 gi|145591215|ref|YP_001153217.1| - 9.2 6.4 64.1 0.33 11.1 1.3 4.6 2 2 2 4 4 4 0 Tropomyosin like MAD PF05557.13 gi|145591215|ref|YP_001153217.1| - 9.9 4.4 48.7 3 6.1 12.8 3.4 2 2 1 3 3 3 0 Mitotic checkpoint protein eRF1_2 PF03464.15 gi|145591216|ref|YP_001153218.1| - 1.6e-33 115.9 0.0 3e-33 115.0 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|145591216|ref|YP_001153218.1| - 6.4e-14 52.4 0.0 1.4e-13 51.2 0.0 1.6 1 1 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|145591216|ref|YP_001153218.1| - 1.3e-13 51.4 0.1 2.3e-13 50.6 0.1 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_3 PF03465.15 gi|145591216|ref|YP_001153218.1| - 5e-11 43.1 2.5 4.5e-10 40.0 2.5 2.5 1 1 0 1 1 1 1 eRF1 domain 3 eRF1_1 PF03463.15 gi|145591216|ref|YP_001153218.1| - 3.9e-06 26.9 0.0 6.9e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Ribosomal_L7Ae PF01248.26 gi|145591216|ref|YP_001153218.1| - 0.00013 21.6 0.2 0.00028 20.5 0.2 1.6 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family baeRF_family5 PF18846.1 gi|145591216|ref|YP_001153218.1| - 0.074 13.2 0.0 0.17 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 THDPS_N_2 PF14805.6 gi|145591216|ref|YP_001153218.1| - 0.085 13.1 0.4 7.4 6.9 0.0 2.6 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal Ribosomal_S10 PF00338.22 gi|145591217|ref|YP_001153219.1| - 1.5e-24 86.0 0.0 1.7e-24 85.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e PriA_C PF18074.1 gi|145591217|ref|YP_001153219.1| - 0.026 15.3 0.0 0.045 14.6 0.0 1.4 1 0 0 1 1 1 0 Primosomal protein N C-terminal domain SurE PF01975.17 gi|145591218|ref|YP_001153220.1| - 2.8e-44 151.2 0.0 3.5e-44 150.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Adeno_PV PF03910.13 gi|145591219|ref|YP_001153221.1| - 0.3 9.8 3.2 0.39 9.4 3.2 1.1 1 0 0 1 1 1 0 Adenovirus minor core protein PV HTH_24 PF13412.6 gi|145591220|ref|YP_001153222.1| - 1.4e-05 24.5 0.0 5.5e-05 22.6 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145591220|ref|YP_001153222.1| - 1.8e-05 24.5 0.0 3.2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|145591220|ref|YP_001153222.1| - 0.0022 18.0 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 DprA winged helix domain HTH_26 PF13443.6 gi|145591220|ref|YP_001153222.1| - 0.0039 17.6 0.0 0.006 17.0 0.0 1.3 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain FaeA PF04703.12 gi|145591220|ref|YP_001153222.1| - 0.027 14.9 0.1 0.082 13.3 0.1 1.8 1 1 1 2 2 2 0 FaeA-like protein HTH_20 PF12840.7 gi|145591220|ref|YP_001153222.1| - 0.031 14.3 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain TYW3 PF02676.14 gi|145591221|ref|YP_001153223.1| - 1.6e-28 99.6 0.0 3.9e-28 98.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase TYW3 DHDPS PF00701.22 gi|145591222|ref|YP_001153224.1| - 8.8e-58 195.3 0.0 1.1e-57 195.0 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PcrB PF01884.17 gi|145591222|ref|YP_001153224.1| - 0.04 13.4 0.0 2.1 7.7 0.0 2.2 2 0 0 2 2 2 0 PcrB family Aldo_ket_red PF00248.21 gi|145591224|ref|YP_001153226.1| - 2.8e-41 141.6 0.0 2.9e-39 135.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DUF4129 PF13559.6 gi|145591224|ref|YP_001153226.1| - 0.058 13.7 0.2 0.17 12.2 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) PmbA_TldD PF01523.16 gi|145591225|ref|YP_001153227.1| - 5e-49 167.6 0.5 6.1e-49 167.3 0.1 1.3 2 0 0 2 2 2 1 Putative modulator of DNA gyrase Exonuc_VII_S PF02609.16 gi|145591225|ref|YP_001153227.1| - 0.052 13.6 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 Exonuclease VII small subunit PmbA_TldD PF01523.16 gi|145591226|ref|YP_001153228.1| - 2.5e-28 99.7 0.0 4.1e-28 99.0 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Creatininase PF02633.14 gi|145591227|ref|YP_001153229.1| - 1.4e-63 214.6 0.1 1.6e-63 214.4 0.1 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ZnuA PF01297.17 gi|145591228|ref|YP_001153230.1| - 0.0009 18.7 0.2 0.0043 16.5 0.1 2.0 1 1 0 2 2 2 1 Zinc-uptake complex component A periplasmic MFS_1 PF07690.16 gi|145591229|ref|YP_001153231.1| - 3.8e-41 141.2 87.8 2.1e-33 115.8 58.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|145591229|ref|YP_001153231.1| - 0.023 13.0 0.2 0.023 13.0 0.2 3.7 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Complex1_30kDa PF00329.19 gi|145591230|ref|YP_001153232.1| - 2.8e-31 108.7 0.0 3.8e-31 108.2 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PAC2 PF09754.9 gi|145591230|ref|YP_001153232.1| - 0.056 13.4 0.0 0.064 13.3 0.0 1.2 1 0 0 1 1 1 0 PAC2 family Eclosion PF04736.12 gi|145591230|ref|YP_001153232.1| - 0.15 11.8 0.6 0.33 10.7 0.1 1.8 2 0 0 2 2 2 0 Eclosion hormone Oxidored_q6 PF01058.22 gi|145591231|ref|YP_001153233.1| - 1.3e-23 83.3 0.2 1.6e-23 83.0 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Aldo_ket_red PF00248.21 gi|145591232|ref|YP_001153234.1| - 1.6e-76 257.3 0.0 1.9e-76 257.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ThiS PF02597.20 gi|145591233|ref|YP_001153235.1| - 2.2e-11 44.2 0.0 2.6e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 ThiS family TGS PF02824.21 gi|145591233|ref|YP_001153235.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 TGS domain Lactamase_B PF00753.27 gi|145591234|ref|YP_001153236.1| - 2.9e-19 69.9 0.2 4.8e-19 69.1 0.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|145591234|ref|YP_001153236.1| - 0.012 15.2 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain IMD PF08397.11 gi|145591234|ref|YP_001153236.1| - 0.058 12.8 0.0 0.47 9.8 0.0 2.0 2 0 0 2 2 2 0 IRSp53/MIM homology domain AbiJ_NTD3 PF18860.1 gi|145591234|ref|YP_001153236.1| - 0.12 11.9 0.0 1.9 8.0 0.0 2.3 2 0 0 2 2 2 0 AbiJ N-terminal domain 3 SfsA PF03749.13 gi|145591235|ref|YP_001153237.1| - 7.9e-43 145.7 0.0 1.1e-42 145.2 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|145591235|ref|YP_001153237.1| - 4e-14 52.5 0.1 8.9e-14 51.4 0.1 1.6 1 0 0 1 1 1 1 SfsA N-terminal OB domain DUF1028 PF06267.12 gi|145591236|ref|YP_001153238.1| - 3.2e-72 242.4 1.5 4e-72 242.1 1.5 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) PG_binding_2 PF08823.11 gi|145591236|ref|YP_001153238.1| - 1.3e-26 92.7 0.9 2e-26 92.1 0.2 1.7 2 0 0 2 2 2 1 Putative peptidoglycan binding domain PG_binding_1 PF01471.18 gi|145591236|ref|YP_001153238.1| - 0.00066 19.8 0.0 0.0017 18.5 0.0 1.6 1 0 0 1 1 1 1 Putative peptidoglycan binding domain TPR_14 PF13428.6 gi|145591236|ref|YP_001153238.1| - 1.1 10.2 3.8 16 6.6 0.1 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat Lactamase_B PF00753.27 gi|145591237|ref|YP_001153239.1| - 3.7e-16 59.7 4.9 9.8e-16 58.3 4.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|145591237|ref|YP_001153239.1| - 0.0047 16.5 0.1 0.0071 15.9 0.1 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|145591237|ref|YP_001153239.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain PDZ_6 PF17820.1 gi|145591237|ref|YP_001153239.1| - 0.2 11.6 2.4 1.4 8.8 0.2 3.0 3 0 0 3 3 3 0 PDZ domain PEP-utilizers_C PF02896.18 gi|145591238|ref|YP_001153240.1| - 6.8e-80 268.3 0.0 1.1e-79 267.6 0.0 1.3 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.19 gi|145591238|ref|YP_001153240.1| - 8.5e-53 179.7 0.0 7.1e-44 150.4 0.0 2.5 1 1 1 2 2 2 2 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.23 gi|145591238|ref|YP_001153240.1| - 4.5e-26 90.4 0.6 1.1e-25 89.1 0.6 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Dioxygenase_N PF04444.14 gi|145591238|ref|YP_001153240.1| - 0.058 13.2 0.0 0.24 11.3 0.0 2.1 1 0 0 1 1 1 0 Catechol dioxygenase N terminus RNA_bind PF08675.11 gi|145591239|ref|YP_001153241.1| - 0.0094 16.0 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 RNA binding domain Diphthami_syn_2 PF01902.17 gi|145591240|ref|YP_001153242.1| - 9.7e-51 172.4 0.2 1.1e-50 172.2 0.2 1.0 1 0 0 1 1 1 1 Diphthamide synthase Peptidase_M24 PF00557.24 gi|145591243|ref|YP_001153245.1| - 1.7e-36 125.9 0.0 2e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Acetyltransf_18 PF18014.1 gi|145591243|ref|YP_001153245.1| - 0.018 14.9 0.0 0.045 13.6 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain PEPcase_2 PF14010.6 gi|145591244|ref|YP_001153246.1| - 1e-116 390.4 0.2 1.1e-116 390.2 0.2 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.17 gi|145591244|ref|YP_001153246.1| - 0.00018 19.8 0.0 0.00028 19.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M16 PF00675.20 gi|145591246|ref|YP_001153248.1| - 1.7e-15 57.3 0.0 2.6e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Insulinase (Peptidase family M16) Peptidase_M16_C PF05193.21 gi|145591246|ref|YP_001153248.1| - 5.5e-09 36.3 0.0 2.5e-08 34.2 0.0 2.0 2 1 0 2 2 2 1 Peptidase M16 inactive domain Big_3_2 PF12245.8 gi|145591246|ref|YP_001153248.1| - 0.012 15.9 0.1 5.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial Ig-like domain TMEM239 PF15841.5 gi|145591246|ref|YP_001153248.1| - 0.25 11.2 0.5 0.4 10.6 0.0 1.5 2 0 0 2 2 2 0 Transmembrane protein 239 family PIN PF01850.21 gi|145591247|ref|YP_001153249.1| - 2.2e-08 34.6 0.4 2.6e-08 34.4 0.4 1.1 1 0 0 1 1 1 1 PIN domain CcdA PF07362.12 gi|145591248|ref|YP_001153250.1| - 3.2e-06 27.5 2.6 3.2e-06 27.5 2.6 1.9 1 1 1 2 2 2 1 Post-segregation antitoxin CcdA PSK_trans_fac PF07704.11 gi|145591248|ref|YP_001153250.1| - 0.00058 20.6 9.0 0.00084 20.0 9.0 1.3 1 0 0 1 1 1 1 Rv0623-like transcription factor PRP1_N PF06424.12 gi|145591248|ref|YP_001153250.1| - 0.0013 19.1 1.2 0.0015 19.0 1.2 1.2 1 0 0 1 1 1 1 PRP1 splicing factor, N-terminal Fzo_mitofusin PF04799.13 gi|145591248|ref|YP_001153250.1| - 0.013 15.1 0.1 0.015 14.8 0.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region IGPS PF00218.21 gi|145591248|ref|YP_001153250.1| - 0.02 14.1 0.3 0.022 13.9 0.3 1.0 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF4145 PF13643.6 gi|145591248|ref|YP_001153250.1| - 0.025 14.7 0.7 0.046 13.8 0.7 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) RHH_1 PF01402.21 gi|145591248|ref|YP_001153250.1| - 0.043 13.8 3.4 0.043 13.8 3.4 2.8 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family NEMP PF10225.9 gi|145591248|ref|YP_001153250.1| - 0.049 13.3 0.1 0.052 13.2 0.1 1.0 1 0 0 1 1 1 0 NEMP family TAtT PF16811.5 gi|145591248|ref|YP_001153250.1| - 0.072 12.4 0.4 0.085 12.1 0.4 1.1 1 0 0 1 1 1 0 TRAP transporter T-component DUF4140 PF13600.6 gi|145591248|ref|YP_001153250.1| - 0.14 12.6 3.7 0.17 12.3 3.7 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) NAD_synthase PF02540.17 gi|145591249|ref|YP_001153251.1| - 1.1e-77 260.4 0.0 1.3e-77 260.2 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|145591249|ref|YP_001153251.1| - 2.2e-08 33.3 0.0 0.00017 20.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|145591249|ref|YP_001153251.1| - 0.00018 21.3 0.0 0.00022 21.0 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.13 gi|145591249|ref|YP_001153251.1| - 0.00025 20.6 0.0 0.00047 19.7 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC LPD22 PF18834.1 gi|145591249|ref|YP_001153251.1| - 0.011 15.9 0.3 11 6.2 0.0 3.1 3 0 0 3 3 3 0 Large polyvalent protein associated domain 22 P-II PF00543.22 gi|145591250|ref|YP_001153252.1| - 3.6e-27 94.9 3.1 4.1e-27 94.8 3.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II DUF190 PF02641.15 gi|145591250|ref|YP_001153252.1| - 0.0029 17.9 0.8 0.0046 17.2 0.6 1.4 1 1 0 1 1 1 1 Uncharacterized ACR, COG1993 DUF3240 PF11582.8 gi|145591250|ref|YP_001153252.1| - 0.0096 16.0 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3240) Nit_Regul_Hom PF10126.9 gi|145591250|ref|YP_001153252.1| - 0.032 14.3 0.8 6.5 6.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein, homolog of nitrogen regulatory protein PII Glyco_hydro_80 PF13647.6 gi|145591250|ref|YP_001153252.1| - 0.22 10.9 0.0 0.29 10.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A Ammonium_transp PF00909.21 gi|145591251|ref|YP_001153253.1| - 1.1e-74 251.6 23.4 2e-74 250.7 23.4 1.4 1 1 0 1 1 1 1 Ammonium Transporter Family Phage_holin_2_1 PF04971.12 gi|145591251|ref|YP_001153253.1| - 0.031 14.3 0.3 0.031 14.3 0.3 3.5 3 0 0 3 3 3 0 Bacteriophage P21 holin S Vac_Fusion PF02346.16 gi|145591252|ref|YP_001153254.1| - 0.037 13.6 0.0 0.047 13.3 0.0 1.1 1 0 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 Sugarporin_N PF11471.8 gi|145591252|ref|YP_001153254.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension Polbeta PF18765.1 gi|145591253|ref|YP_001153255.1| - 1.4e-08 34.7 0.0 1.9e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|145591254|ref|YP_001153256.1| - 1.3e-12 47.6 0.0 2.4e-12 46.7 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF86 HEPN PF05168.14 gi|145591255|ref|YP_001153257.1| - 1.1e-30 106.2 1.1 1.2e-30 106.0 1.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|145591255|ref|YP_001153257.1| - 0.0073 16.2 0.5 0.0073 16.2 0.5 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN_AbiV PF18728.1 gi|145591255|ref|YP_001153257.1| - 0.059 13.5 0.5 7.9 6.6 0.7 2.0 1 1 1 2 2 2 0 AbiV DUF4398 PF14346.6 gi|145591255|ref|YP_001153257.1| - 0.87 10.2 7.9 1.3 9.7 2.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4398) TPR_2 PF07719.17 gi|145591255|ref|YP_001153257.1| - 9.6 6.6 8.1 1.1 9.6 0.7 3.3 2 1 2 4 4 4 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|145591256|ref|YP_001153258.1| - 8.9e-11 41.9 0.3 1.3e-10 41.4 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591256|ref|YP_001153258.1| - 1.8e-07 31.2 0.2 2.2e-07 30.9 0.2 1.2 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase BolA PF01722.18 gi|145591256|ref|YP_001153258.1| - 0.092 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 BolA-like protein ATPase_2 PF01637.18 gi|145591257|ref|YP_001153259.1| - 1.3e-60 205.2 0.0 1.6e-60 204.9 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|145591257|ref|YP_001153259.1| - 0.018 15.3 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|145591257|ref|YP_001153259.1| - 0.027 14.6 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145591257|ref|YP_001153259.1| - 0.039 14.3 0.0 0.081 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|145591257|ref|YP_001153259.1| - 0.075 13.5 0.0 0.21 12.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|145591257|ref|YP_001153259.1| - 0.082 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145591257|ref|YP_001153259.1| - 0.097 12.4 0.0 0.26 11.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145591257|ref|YP_001153259.1| - 0.11 12.1 0.1 0.67 9.5 0.1 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|145591257|ref|YP_001153259.1| - 0.17 12.3 0.0 0.36 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CarboxypepD_reg PF13620.6 gi|145591258|ref|YP_001153260.1| - 0.0029 17.8 0.3 0.044 14.1 0.1 2.2 2 0 0 2 2 2 1 Carboxypeptidase regulatory-like domain fn3_3 PF14686.6 gi|145591258|ref|YP_001153260.1| - 2.2 8.2 6.5 12 5.7 0.4 2.6 2 1 1 3 3 3 0 Polysaccharide lyase family 4, domain II Epimerase PF01370.21 gi|145591259|ref|YP_001153261.1| - 6.2e-14 52.0 0.0 7.6e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|145591259|ref|YP_001153261.1| - 3.6e-07 29.6 0.0 8.6e-07 28.3 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|145591259|ref|YP_001153261.1| - 7.8e-05 22.6 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|145591259|ref|YP_001153261.1| - 9.1e-05 22.0 0.0 0.00015 21.3 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|145591259|ref|YP_001153261.1| - 0.0031 16.7 0.0 0.28 10.3 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.19 gi|145591259|ref|YP_001153261.1| - 0.007 15.4 0.0 0.11 11.5 0.0 2.6 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF711 PF05167.12 gi|145591261|ref|YP_001153263.1| - 1.2e-137 459.1 1.4 1.5e-137 458.9 1.4 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) ACT_6 PF13740.6 gi|145591262|ref|YP_001153264.1| - 6.8e-18 64.4 1.2 7.8e-18 64.2 1.2 1.0 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|145591262|ref|YP_001153264.1| - 7.9e-13 47.9 2.6 1e-12 47.6 2.6 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|145591262|ref|YP_001153264.1| - 8.6e-06 26.3 2.1 1.1e-05 25.9 2.1 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|145591262|ref|YP_001153264.1| - 4.3e-05 23.2 1.1 6.8e-05 22.6 1.1 1.4 1 0 0 1 1 1 1 ACT domain Citrate_synt PF00285.21 gi|145591263|ref|YP_001153265.1| - 6.6e-116 387.3 0.1 7.5e-116 387.1 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain Cytochrom_C_2 PF01322.20 gi|145591265|ref|YP_001153267.1| - 0.0046 17.9 2.6 3.7 8.5 0.1 2.9 2 1 1 3 3 3 2 Cytochrome C' TetR_C_6 PF13977.6 gi|145591265|ref|YP_001153267.1| - 0.041 14.1 3.1 0.43 10.8 0.3 2.5 2 1 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal HJURP_C PF12347.8 gi|145591265|ref|YP_001153267.1| - 0.11 12.5 0.0 5.9 7.0 0.0 2.6 2 1 0 2 2 2 0 Holliday junction regulator protein family C-terminal repeat NPV_P10 PF05531.12 gi|145591265|ref|YP_001153267.1| - 0.13 12.7 0.1 0.56 10.7 0.0 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FliT PF05400.13 gi|145591265|ref|YP_001153267.1| - 0.26 12.1 2.3 0.49 11.2 0.3 2.4 3 0 0 3 3 3 0 Flagellar protein FliT Zip PF02535.22 gi|145591266|ref|YP_001153268.1| - 8.4e-18 64.7 11.9 8.4e-18 64.7 11.9 2.7 1 1 2 3 3 3 2 ZIP Zinc transporter Band_7_1 PF13421.6 gi|145591267|ref|YP_001153269.1| - 1.1e-31 110.2 0.1 1.6e-31 109.6 0.1 1.2 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.25 gi|145591267|ref|YP_001153269.1| - 2.3e-18 66.8 0.1 3.2e-18 66.4 0.1 1.4 1 1 0 1 1 1 1 SPFH domain / Band 7 family zinc_ribbon_2 PF13240.6 gi|145591267|ref|YP_001153269.1| - 6.5e-16 57.5 15.8 5e-08 32.4 4.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|145591267|ref|YP_001153269.1| - 1.8e-12 47.1 10.4 3e-12 46.4 10.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|145591267|ref|YP_001153269.1| - 4.4e-09 35.4 16.0 0.00011 21.5 5.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-RanBP PF00641.18 gi|145591267|ref|YP_001153269.1| - 9.6e-06 24.8 6.8 0.0051 16.1 1.1 2.3 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zinc_ribbon_15 PF17032.5 gi|145591267|ref|YP_001153269.1| - 3e-05 24.7 7.0 0.04 14.7 0.3 2.5 3 0 0 3 3 2 2 zinc-ribbon family zf-tcix PF14952.6 gi|145591267|ref|YP_001153269.1| - 0.00014 21.4 12.7 0.0045 16.6 2.1 2.3 1 1 1 2 2 2 2 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|145591267|ref|YP_001153269.1| - 0.0022 17.8 9.9 0.01 15.7 0.5 2.4 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HNH_repeat PF18780.1 gi|145591267|ref|YP_001153269.1| - 0.0048 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Homing endonuclease repeat zf-TRM13_CCCH PF11722.8 gi|145591267|ref|YP_001153269.1| - 0.021 14.6 4.3 0.77 9.6 1.2 2.3 1 1 1 2 2 2 0 CCCH zinc finger in TRM13 protein UPF0547 PF10571.9 gi|145591267|ref|YP_001153269.1| - 0.028 14.5 18.4 0.14 12.3 3.8 3.3 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 BMF PF15185.6 gi|145591267|ref|YP_001153269.1| - 0.045 13.5 0.4 10 5.8 0.1 2.5 2 1 0 2 2 2 0 Bcl-2-modifying factor, apoptosis DHHC PF01529.20 gi|145591267|ref|YP_001153269.1| - 0.089 12.9 5.1 3.7 7.7 0.5 2.4 1 1 1 2 2 2 0 DHHC palmitoyltransferase Nudix_N_2 PF14803.6 gi|145591267|ref|YP_001153269.1| - 0.29 11.1 15.2 9.4 6.3 0.3 4.2 3 1 1 4 4 4 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|145591267|ref|YP_001153269.1| - 0.36 10.8 7.9 2 8.4 1.0 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|145591267|ref|YP_001153269.1| - 1.4 8.7 10.4 2.3 8.0 0.2 3.6 4 0 0 4 4 3 0 NADH pyrophosphatase zinc ribbon domain Auto_anti-p27 PF06677.12 gi|145591267|ref|YP_001153269.1| - 5.6 7.2 13.9 0.82 9.9 2.5 2.8 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) A2L_zn_ribbon PF08792.10 gi|145591267|ref|YP_001153269.1| - 9.4 6.1 14.4 13 5.6 0.2 4.3 4 0 0 4 4 4 0 A2L zinc ribbon domain nlz1 PF12402.8 gi|145591268|ref|YP_001153270.1| - 0.027 14.9 3.0 0.029 14.8 0.4 2.1 1 1 0 2 2 2 0 NocA-like zinc-finger protein 1 YtpI PF14007.6 gi|145591268|ref|YP_001153270.1| - 1.1 9.5 12.0 0.46 10.7 3.2 2.8 1 1 2 3 3 3 0 YtpI-like protein DUF4190 PF13828.6 gi|145591268|ref|YP_001153270.1| - 1.3 8.8 24.4 4.4 7.1 15.3 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4190) DUF308 PF03729.13 gi|145591268|ref|YP_001153270.1| - 4 7.8 24.3 7.1 7.0 14.6 2.2 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF1152 PF06626.12 gi|145591269|ref|YP_001153271.1| - 3.5e-82 276.0 0.5 4e-82 275.8 0.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) PaRep2b PF07775.11 gi|145591270|ref|YP_001153272.1| - 1.9e-79 267.5 10.1 9.8e-44 149.7 1.2 2.0 1 1 0 2 2 2 2 PaRep2b protein Radical_SAM PF04055.21 gi|145591270|ref|YP_001153272.1| - 0.035 14.5 0.1 0.097 13.0 0.1 1.8 1 0 0 1 1 1 0 Radical SAM superfamily SpoIIIAH PF12685.7 gi|145591271|ref|YP_001153273.1| - 0.018 14.8 0.2 0.024 14.4 0.2 1.2 1 0 0 1 1 1 0 SpoIIIAH-like protein Mucin PF01456.17 gi|145591271|ref|YP_001153273.1| - 0.049 13.6 27.2 0.081 12.9 27.2 1.3 1 0 0 1 1 1 0 Mucin-like glycoprotein DUF1970 PF09301.10 gi|145591271|ref|YP_001153273.1| - 0.073 13.3 3.2 0.12 12.6 3.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1970) NCE101 PF11654.8 gi|145591271|ref|YP_001153273.1| - 0.15 11.8 0.1 0.3 10.8 0.1 1.4 1 0 0 1 1 1 0 Non-classical export protein 1 ATF7IP_BD PF16788.5 gi|145591271|ref|YP_001153273.1| - 2.1 8.4 13.2 3.2 7.8 13.2 1.2 1 0 0 1 1 1 0 ATF-interacting protein binding domain TF_Zn_Ribbon PF08271.12 gi|145591272|ref|YP_001153274.1| - 6.4e-07 28.8 0.9 1.1e-06 28.0 0.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|145591272|ref|YP_001153274.1| - 0.0002 20.6 1.9 0.099 12.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|145591272|ref|YP_001153274.1| - 0.0054 16.4 5.2 0.012 15.4 5.2 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145591272|ref|YP_001153274.1| - 0.0088 16.0 2.0 0.07 13.1 2.0 2.1 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|145591272|ref|YP_001153274.1| - 0.015 15.3 0.6 0.027 14.5 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-BED PF02892.15 gi|145591272|ref|YP_001153274.1| - 0.065 13.3 0.6 0.84 9.7 0.0 2.2 1 1 1 2 2 2 0 BED zinc finger zf-C2H2_4 PF13894.6 gi|145591272|ref|YP_001153274.1| - 0.09 13.7 1.6 10 7.3 0.1 2.6 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Di19 PF05605.12 gi|145591272|ref|YP_001153274.1| - 0.11 12.9 3.2 6.9 7.0 0.2 2.2 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_SprT PF17283.2 gi|145591272|ref|YP_001153274.1| - 0.13 12.2 1.0 0.36 10.8 1.0 1.7 1 1 0 1 1 1 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145591272|ref|YP_001153274.1| - 0.15 12.0 0.3 0.25 11.3 0.3 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|145591272|ref|YP_001153274.1| - 0.28 11.7 3.8 11 6.7 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-RRN7 PF11781.8 gi|145591272|ref|YP_001153274.1| - 0.35 10.6 1.7 0.79 9.5 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-Mss51 PF13824.6 gi|145591272|ref|YP_001153274.1| - 0.4 10.8 1.5 0.66 10.1 1.5 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_CPXG PF14255.6 gi|145591272|ref|YP_001153274.1| - 0.44 10.5 4.9 4.6 7.2 0.4 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG UPF0547 PF10571.9 gi|145591272|ref|YP_001153274.1| - 0.81 9.8 4.2 5.4 7.2 0.3 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-CHCC PF10276.9 gi|145591272|ref|YP_001153274.1| - 2.1 8.5 5.0 10 6.3 0.9 2.3 2 0 0 2 2 2 0 Zinc-finger domain zf-ribbon_3 PF13248.6 gi|145591273|ref|YP_001153275.1| - 0.00093 18.5 3.3 0.0042 16.4 3.3 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-CHCC PF10276.9 gi|145591273|ref|YP_001153275.1| - 0.0075 16.3 2.3 1.7 8.8 0.1 2.3 2 0 0 2 2 2 2 Zinc-finger domain Prok-RING_1 PF14446.6 gi|145591273|ref|YP_001153275.1| - 0.02 14.8 2.9 0.031 14.2 2.9 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 PspC PF04024.12 gi|145591273|ref|YP_001153275.1| - 0.03 14.1 1.9 0.03 14.1 1.9 1.8 2 0 0 2 2 2 0 PspC domain zinc_ribbon_2 PF13240.6 gi|145591273|ref|YP_001153275.1| - 0.039 13.7 4.6 2.5 7.9 1.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lant_dehydr_N PF04738.13 gi|145591273|ref|YP_001153275.1| - 0.04 12.0 0.7 0.053 11.6 0.7 1.1 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus DZR PF12773.7 gi|145591273|ref|YP_001153275.1| - 0.05 13.6 1.6 0.084 12.9 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|145591273|ref|YP_001153275.1| - 0.066 13.2 1.1 0.14 12.1 1.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Pox_F15 PF04596.12 gi|145591273|ref|YP_001153275.1| - 0.099 12.4 0.1 0.34 10.7 0.0 2.0 2 1 0 2 2 2 0 Poxvirus protein F15 PyrI_C PF02748.15 gi|145591273|ref|YP_001153275.1| - 0.38 10.7 4.1 7.2 6.6 0.1 2.4 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain FAM76 PF16046.5 gi|145591273|ref|YP_001153275.1| - 0.46 9.8 0.7 0.71 9.2 0.7 1.2 1 0 0 1 1 1 0 FAM76 protein Aminotran_1_2 PF00155.21 gi|145591274|ref|YP_001153276.1| - 2.5e-13 50.0 0.0 6.4e-13 48.6 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II PTS_2-RNA PF01885.16 gi|145591275|ref|YP_001153277.1| - 7.3e-29 101.1 0.0 8.6e-29 100.9 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family HTH_IclR PF09339.10 gi|145591276|ref|YP_001153278.1| - 4.5e-07 29.6 0.3 8.7e-07 28.6 0.3 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|145591276|ref|YP_001153278.1| - 2.5e-06 27.5 0.1 4.2e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|145591276|ref|YP_001153278.1| - 0.00053 19.8 0.0 0.00093 19.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|145591276|ref|YP_001153278.1| - 0.0012 18.6 0.0 0.0021 17.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|145591276|ref|YP_001153278.1| - 0.0024 17.7 0.2 0.0042 16.9 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|145591276|ref|YP_001153278.1| - 0.0024 18.3 0.2 0.0039 17.7 0.2 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|145591276|ref|YP_001153278.1| - 0.0058 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|145591276|ref|YP_001153278.1| - 0.0079 15.7 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FeoB_associated PF12669.7 gi|145591276|ref|YP_001153278.1| - 0.013 15.8 0.0 0.023 15.1 0.0 1.4 1 0 0 1 1 1 0 FeoB-associated Cys-rich membrane protein Fe_dep_repress PF01325.19 gi|145591276|ref|YP_001153278.1| - 0.026 14.7 0.0 0.052 13.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Pex14_N PF04695.13 gi|145591276|ref|YP_001153278.1| - 0.04 14.6 8.3 0.071 13.8 8.3 1.3 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_34 PF13601.6 gi|145591276|ref|YP_001153278.1| - 0.053 13.7 0.0 0.087 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|145591276|ref|YP_001153278.1| - 0.076 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|145591276|ref|YP_001153278.1| - 0.16 12.3 0.1 0.27 11.6 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator MGC-24 PF05283.11 gi|145591276|ref|YP_001153278.1| - 4.7 7.7 5.3 8.5 6.8 5.3 1.3 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin PIN PF01850.21 gi|145591277|ref|YP_001153279.1| - 7.3e-06 26.5 0.3 8.6e-06 26.3 0.3 1.2 1 0 0 1 1 1 1 PIN domain DUF1110 PF06533.12 gi|145591277|ref|YP_001153279.1| - 0.046 13.7 0.2 0.065 13.2 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1110) DUF2249 PF10006.9 gi|145591278|ref|YP_001153280.1| - 0.12 12.3 0.1 0.18 11.7 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) PKcGMP_CC PF16808.5 gi|145591278|ref|YP_001153280.1| - 0.67 9.8 5.0 2 8.3 5.0 1.8 1 1 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Chordopox_G2 PF05796.12 gi|145591279|ref|YP_001153281.1| - 0.16 11.4 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 Chordopoxvirus protein G2 CO_dh PF02552.16 gi|145591279|ref|YP_001153281.1| - 0.22 11.3 0.0 0.3 10.9 0.0 1.1 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HisKA_3 PF07730.13 gi|145591280|ref|YP_001153282.1| - 0.73 10.4 5.5 2.2 8.8 0.0 3.7 5 0 0 5 5 5 0 Histidine kinase AAA_5 PF07728.14 gi|145591281|ref|YP_001153283.1| - 4.6e-21 75.3 0.0 6.7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|145591281|ref|YP_001153283.1| - 0.00055 20.4 0.0 0.0011 19.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|145591281|ref|YP_001153283.1| - 0.0021 17.6 0.0 0.0041 16.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region EVE PF01878.18 gi|145591281|ref|YP_001153283.1| - 0.0024 17.9 0.0 0.0052 16.8 0.0 1.5 1 1 0 1 1 1 1 EVE domain Mg_chelatase PF01078.21 gi|145591281|ref|YP_001153283.1| - 0.0026 17.2 0.0 0.0045 16.4 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|145591281|ref|YP_001153283.1| - 0.0036 16.9 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145591281|ref|YP_001153283.1| - 0.0061 16.8 0.0 0.018 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591281|ref|YP_001153283.1| - 0.0086 16.5 0.2 0.063 13.7 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|145591281|ref|YP_001153283.1| - 0.081 13.1 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|145591281|ref|YP_001153283.1| - 0.12 12.3 0.0 14 5.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Lactamase_B_3 PF13483.6 gi|145591284|ref|YP_001153286.1| - 1.9e-07 31.1 0.0 4e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|145591284|ref|YP_001153286.1| - 2.4e-05 23.9 0.0 4.7e-05 23.0 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591284|ref|YP_001153286.1| - 0.00051 20.1 3.2 0.016 15.2 3.2 2.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily HTH_45 PF14947.6 gi|145591285|ref|YP_001153287.1| - 8.5e-22 76.9 0.0 9.3e-22 76.8 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.9 gi|145591285|ref|YP_001153287.1| - 0.00026 21.5 0.0 0.00035 21.1 0.0 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain TrmB PF01978.19 gi|145591285|ref|YP_001153287.1| - 0.0093 15.8 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|145591285|ref|YP_001153287.1| - 0.037 13.9 0.1 0.056 13.3 0.1 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|145591285|ref|YP_001153287.1| - 0.14 12.5 0.1 0.2 12.0 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF3951 PF13131.6 gi|145591286|ref|YP_001153288.1| - 0.15 12.3 0.3 0.15 12.3 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3951) Vma12 PF11712.8 gi|145591286|ref|YP_001153288.1| - 3.1 7.9 9.1 1.9 8.5 2.3 2.4 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase FtsX PF02687.21 gi|145591287|ref|YP_001153289.1| - 1.9e-11 44.2 4.3 1.9e-11 44.2 4.3 3.3 3 1 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|145591287|ref|YP_001153289.1| - 2e-11 44.6 11.3 2e-11 44.6 11.3 2.3 2 0 0 2 2 2 1 MacB-like periplasmic core domain DUF11 PF01345.18 gi|145591288|ref|YP_001153290.1| - 0.0041 17.4 2.8 0.0041 17.4 2.8 5.8 4 2 0 4 4 4 2 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|145591288|ref|YP_001153290.1| - 0.0048 17.1 0.3 0.0048 17.1 0.3 5.5 5 1 0 5 5 5 1 NPCBM-associated, NEW3 domain of alpha-galactosidase ASH PF15780.5 gi|145591288|ref|YP_001153290.1| - 0.081 13.1 2.0 0.9 9.8 0.1 3.6 5 0 0 5 5 5 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin CARDB PF07705.11 gi|145591288|ref|YP_001153290.1| - 0.67 10.2 11.9 5 7.4 0.0 4.5 2 1 2 5 5 5 0 CARDB ABC_tran PF00005.27 gi|145591289|ref|YP_001153291.1| - 7e-33 114.0 0.0 9e-33 113.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591289|ref|YP_001153291.1| - 3.4e-08 33.7 0.1 0.0065 16.3 0.2 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591289|ref|YP_001153291.1| - 0.00012 21.6 0.1 0.4 10.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|145591289|ref|YP_001153291.1| - 0.00038 20.1 0.0 0.00072 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|145591289|ref|YP_001153291.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|145591289|ref|YP_001153291.1| - 0.02 14.5 0.1 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|145591289|ref|YP_001153291.1| - 0.051 13.7 0.2 0.16 12.2 0.2 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|145591289|ref|YP_001153291.1| - 0.062 13.5 0.1 1.3 9.3 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|145591289|ref|YP_001153291.1| - 0.063 13.0 0.0 0.24 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|145591289|ref|YP_001153291.1| - 0.082 13.4 0.0 0.12 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|145591289|ref|YP_001153291.1| - 0.091 12.7 0.0 0.43 10.5 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|145591289|ref|YP_001153291.1| - 0.11 12.7 0.7 0.48 10.7 0.2 2.1 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|145591289|ref|YP_001153291.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145591289|ref|YP_001153291.1| - 0.14 12.6 0.3 0.18 12.2 0.3 1.5 1 1 0 1 1 1 0 AAA ATPase domain Phage_Coat_Gp8 PF05371.12 gi|145591290|ref|YP_001153292.1| - 0.02 14.7 2.3 0.047 13.5 2.3 1.6 1 0 0 1 1 1 0 Phage major coat protein, Gp8 Ribophorin_II PF05817.14 gi|145591290|ref|YP_001153292.1| - 1.3 7.5 3.5 1.7 7.1 3.5 1.1 1 0 0 1 1 1 0 Oligosaccharyltransferase subunit Ribophorin II YGGT PF02325.17 gi|145591290|ref|YP_001153292.1| - 9.1 6.8 9.6 0.58 10.6 1.5 2.5 2 1 0 2 2 2 0 YGGT family FtsX PF02687.21 gi|145591291|ref|YP_001153293.1| - 0.022 15.2 2.3 0.022 15.2 2.3 2.1 2 0 0 2 2 2 0 FtsX-like permease family Radical_SAM PF04055.21 gi|145591292|ref|YP_001153294.1| - 1.6e-23 83.9 0.0 1.5e-22 80.7 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily zinc_ribbon_2 PF13240.6 gi|145591292|ref|YP_001153294.1| - 0.0015 18.2 5.6 0.43 10.3 0.3 2.6 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|145591292|ref|YP_001153294.1| - 0.0046 17.0 0.1 0.0046 17.0 0.1 2.2 3 0 0 3 3 2 1 Double zinc ribbon PknG_rubred PF16919.5 gi|145591292|ref|YP_001153294.1| - 0.023 14.8 0.7 0.023 14.8 0.7 1.6 2 0 0 2 2 2 0 Protein kinase G rubredoxin domain zf-C4_Topoisom PF01396.19 gi|145591292|ref|YP_001153294.1| - 0.026 14.3 1.3 4 7.3 0.2 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.21 gi|145591292|ref|YP_001153294.1| - 0.19 12.0 0.1 0.19 12.0 0.1 2.2 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain HflK_N PF12221.8 gi|145591292|ref|YP_001153294.1| - 0.2 11.7 0.0 0.58 10.2 0.0 1.8 2 0 0 2 2 2 0 Bacterial membrane protein N terminal zf-NADH-PPase PF09297.11 gi|145591292|ref|YP_001153294.1| - 0.23 11.1 0.1 0.23 11.1 0.1 2.8 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145591292|ref|YP_001153294.1| - 0.41 10.1 8.6 1.3 8.5 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145591292|ref|YP_001153294.1| - 0.89 9.5 3.2 0.34 10.8 0.4 1.8 2 0 0 2 2 1 0 Putative transposase DNA-binding domain zf_C2H2_10 PF18414.1 gi|145591292|ref|YP_001153294.1| - 1.1 8.9 6.0 1.4 8.6 0.8 2.4 2 0 0 2 2 2 0 C2H2 type zinc-finger PIN PF01850.21 gi|145591293|ref|YP_001153295.1| - 3.1e-18 66.4 3.0 3.6e-18 66.2 3.0 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|145591293|ref|YP_001153295.1| - 0.011 15.9 0.2 0.014 15.7 0.2 1.1 1 0 0 1 1 1 0 PIN domain Psu PF07455.11 gi|145591294|ref|YP_001153296.1| - 0.053 13.1 0.0 0.053 13.1 0.0 1.0 1 0 0 1 1 1 0 Phage polarity suppression protein (Psu) NTP_transf_2 PF01909.23 gi|145591295|ref|YP_001153297.1| - 1e-12 48.2 0.0 1.1e-12 48.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591295|ref|YP_001153297.1| - 1.6e-07 31.3 0.0 1.8e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|145591295|ref|YP_001153297.1| - 0.15 11.9 0.0 0.2 11.4 0.0 1.4 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HEPN PF05168.14 gi|145591296|ref|YP_001153298.1| - 8.5e-28 96.9 0.5 1e-27 96.6 0.5 1.0 1 0 0 1 1 1 1 HEPN domain Nre_N PF04894.12 gi|145591297|ref|YP_001153299.1| - 2.7e-84 283.2 0.0 3.6e-84 282.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|145591297|ref|YP_001153299.1| - 3.6e-16 59.0 0.1 6.4e-16 58.2 0.1 1.3 1 0 0 1 1 1 1 Archaeal Nre, C-terminal SBP_bac_8 PF13416.6 gi|145591298|ref|YP_001153300.1| - 3.3e-10 40.2 2.2 4.4e-10 39.8 0.0 2.1 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|145591298|ref|YP_001153300.1| - 1.9e-07 30.8 0.0 3.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ComP_DUS PF16732.5 gi|145591298|ref|YP_001153300.1| - 0.1 13.5 1.5 0.33 11.9 1.5 1.9 1 0 0 1 1 1 0 Type IV minor pilin ComP, DNA uptake sequence receptor Thiolase_N PF00108.23 gi|145591299|ref|YP_001153301.1| - 2.4e-65 220.5 0.0 3.6e-65 219.9 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|145591299|ref|YP_001153301.1| - 2.4e-46 156.4 0.5 5.1e-46 155.3 0.5 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|145591299|ref|YP_001153301.1| - 0.00038 20.1 5.0 0.0022 17.6 1.2 3.4 2 2 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Apocytochr_F_N PF16639.5 gi|145591299|ref|YP_001153301.1| - 0.012 15.8 0.0 0.023 15.0 0.0 1.3 1 0 0 1 1 1 0 Apocytochrome F, N-terminal HTH_3 PF01381.22 gi|145591299|ref|YP_001153301.1| - 0.17 12.0 0.1 46 4.2 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix Meth_synt_2 PF01717.18 gi|145591300|ref|YP_001153302.1| - 1.3e-36 126.5 0.1 1.1e-22 80.8 0.0 2.1 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|145591300|ref|YP_001153302.1| - 0.00062 19.4 0.0 0.23 10.9 0.0 2.4 3 0 0 3 3 3 2 Cobalamin-independent synthase, N-terminal domain FtsX PF02687.21 gi|145591301|ref|YP_001153303.1| - 2.3e-12 47.2 6.6 2.3e-12 47.2 6.6 3.3 3 1 0 3 3 3 1 FtsX-like permease family MacB_PCD PF12704.7 gi|145591301|ref|YP_001153303.1| - 2.3e-09 37.9 10.0 2.3e-09 37.9 10.0 2.1 2 1 1 3 3 3 1 MacB-like periplasmic core domain LptF_LptG PF03739.14 gi|145591301|ref|YP_001153303.1| - 1.5 7.6 13.2 0.02 13.7 3.7 2.2 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG DUF4199 PF13858.6 gi|145591302|ref|YP_001153304.1| - 0.00017 22.0 1.3 0.0013 19.2 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF4199) Romo1 PF10247.9 gi|145591302|ref|YP_001153304.1| - 0.00055 20.2 2.4 0.00087 19.6 0.2 2.2 2 1 0 2 2 2 1 Reactive mitochondrial oxygen species modulator 1 RGS-like PF09128.11 gi|145591302|ref|YP_001153304.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Regulator of G protein signalling-like domain 5TM-5TMR_LYT PF07694.12 gi|145591302|ref|YP_001153304.1| - 0.14 11.7 7.7 0.29 10.6 1.9 2.2 2 0 0 2 2 2 0 5TMR of 5TMR-LYT CbtA PF09490.10 gi|145591302|ref|YP_001153304.1| - 0.2 11.4 10.5 0.51 10.1 10.5 1.6 1 1 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) DUF4690 PF15756.5 gi|145591303|ref|YP_001153305.1| - 0.017 15.7 1.0 0.12 13.0 0.1 2.6 2 0 0 2 2 2 0 Small Novel Rich in Cartilage NPCBM_assoc PF10633.9 gi|145591303|ref|YP_001153305.1| - 0.047 13.9 7.9 0.066 13.5 0.0 4.4 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase PKD PF00801.20 gi|145591303|ref|YP_001153305.1| - 1.7 8.6 10.5 0.25 11.2 0.2 4.7 6 0 0 6 6 6 0 PKD domain Glyco_trans_2_3 PF13632.6 gi|145591304|ref|YP_001153306.1| - 4.1e-17 62.8 0.9 5.7e-17 62.3 0.9 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|145591304|ref|YP_001153306.1| - 1.5e-10 41.4 0.1 3e-10 40.4 0.1 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|145591304|ref|YP_001153306.1| - 1.1e-07 31.5 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cyclase PF04199.13 gi|145591305|ref|YP_001153307.1| - 1.1e-29 103.4 0.0 1.3e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase GHMP_kinases_N PF00288.26 gi|145591306|ref|YP_001153308.1| - 5.9e-11 42.4 4.0 5.9e-11 42.4 4.0 2.8 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|145591306|ref|YP_001153308.1| - 1e-09 38.6 1.0 1.9e-09 37.8 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal DUF3043 PF11241.8 gi|145591307|ref|YP_001153309.1| - 0.23 11.5 6.4 0.28 11.2 6.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) CitMHS PF03600.16 gi|145591307|ref|YP_001153309.1| - 0.59 9.3 11.9 0.87 8.7 11.9 1.2 1 0 0 1 1 1 0 Citrate transporter Phage_holin_4_2 PF04020.13 gi|145591307|ref|YP_001153309.1| - 0.82 10.4 17.3 0.94 10.2 16.2 1.6 1 1 1 2 2 2 0 Mycobacterial 4 TMS phage holin, superfamily IV SUR7 PF06687.12 gi|145591307|ref|YP_001153309.1| - 1.1 8.9 10.6 1.3 8.6 10.6 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF4191 PF13829.6 gi|145591307|ref|YP_001153309.1| - 2.4 7.5 6.4 2.7 7.3 6.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF2070 PF09843.9 gi|145591307|ref|YP_001153309.1| - 3.9 5.7 12.2 4.5 5.4 12.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2975 PF11188.8 gi|145591307|ref|YP_001153309.1| - 4.5 7.2 15.6 0.27 11.1 4.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) Flu_M2 PF00599.17 gi|145591307|ref|YP_001153309.1| - 6 7.0 6.0 1.4 9.0 0.2 2.1 1 1 1 2 2 2 0 Influenza Matrix protein (M2) Amastin PF07344.11 gi|145591307|ref|YP_001153309.1| - 6.3 6.6 11.4 10 6.0 11.4 1.5 1 1 0 1 1 1 0 Amastin surface glycoprotein DUF402 PF04167.13 gi|145591308|ref|YP_001153310.1| - 3.2e-09 36.9 0.1 5.7e-09 36.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|145591308|ref|YP_001153310.1| - 0.21 11.0 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Ribonuclease E/G family adh_short_C2 PF13561.6 gi|145591309|ref|YP_001153311.1| - 2.3e-36 125.5 1.3 4.3e-36 124.6 1.3 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145591309|ref|YP_001153311.1| - 9.5e-34 116.6 0.3 1.2e-33 116.2 0.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145591309|ref|YP_001153311.1| - 1.5e-07 31.5 0.8 4.9e-07 29.8 0.8 1.6 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|145591309|ref|YP_001153311.1| - 2e-06 27.8 0.5 3.3e-06 27.1 0.5 1.3 1 0 0 1 1 1 1 NAD(P)H-binding DUF460 PF04312.13 gi|145591309|ref|YP_001153311.1| - 0.009 15.7 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) THF_DHG_CYH_C PF02882.19 gi|145591309|ref|YP_001153311.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF1776 PF08643.10 gi|145591309|ref|YP_001153311.1| - 0.21 10.9 0.0 0.27 10.5 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) Polbeta PF18765.1 gi|145591310|ref|YP_001153312.1| - 3.6e-10 39.8 0.0 6.2e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|145591310|ref|YP_001153312.1| - 3.7e-10 39.7 0.0 6e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF86 LigA PF07746.11 gi|145591310|ref|YP_001153312.1| - 0.092 12.9 0.1 0.47 10.6 0.0 2.2 2 1 1 3 3 3 0 Aromatic-ring-opening dioxygenase LigAB, LigA subunit DUF4097 PF13349.6 gi|145591312|ref|YP_001153314.1| - 0.00039 19.8 0.0 0.0006 19.2 0.0 1.3 1 0 0 1 1 1 1 Putative adhesin UPF0051 PF01458.17 gi|145591313|ref|YP_001153315.1| - 2.7e-50 171.1 0.1 3.4e-50 170.8 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|145591314|ref|YP_001153316.1| - 1.1e-21 77.8 0.0 1.4e-21 77.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591314|ref|YP_001153316.1| - 1.5e-12 48.0 0.4 3.9e-07 30.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591314|ref|YP_001153316.1| - 1.5e-08 34.4 0.1 0.00055 19.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|145591314|ref|YP_001153316.1| - 0.0015 18.3 0.0 1.2 8.8 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|145591314|ref|YP_001153316.1| - 0.0029 17.3 0.1 0.0054 16.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145591314|ref|YP_001153316.1| - 0.004 17.7 0.0 0.0058 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591314|ref|YP_001153316.1| - 0.013 15.8 0.2 0.019 15.3 0.2 1.6 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|145591314|ref|YP_001153316.1| - 0.018 15.0 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|145591314|ref|YP_001153316.1| - 0.02 15.3 0.2 0.13 12.7 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|145591314|ref|YP_001153316.1| - 0.039 14.2 0.0 0.091 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|145591314|ref|YP_001153316.1| - 0.048 13.6 0.0 0.082 12.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|145591314|ref|YP_001153316.1| - 0.051 13.3 0.1 0.075 12.7 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|145591314|ref|YP_001153316.1| - 0.086 12.4 0.0 0.19 11.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain KdpD PF02702.17 gi|145591314|ref|YP_001153316.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain NTPase_1 PF03266.15 gi|145591314|ref|YP_001153316.1| - 0.15 12.0 0.0 0.35 10.8 0.0 1.8 1 1 0 1 1 1 0 NTPase PadR PF03551.14 gi|145591315|ref|YP_001153317.1| - 3.4e-16 59.0 0.0 5.7e-16 58.2 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Mrr_N PF14338.6 gi|145591315|ref|YP_001153317.1| - 0.014 15.5 0.1 0.037 14.1 0.1 1.7 2 0 0 2 2 2 0 Mrr N-terminal domain MarR PF01047.22 gi|145591315|ref|YP_001153317.1| - 0.021 14.7 0.0 0.056 13.4 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.6 gi|145591315|ref|YP_001153317.1| - 0.034 14.6 0.1 0.11 13.0 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF505 PF04458.12 gi|145591315|ref|YP_001153317.1| - 0.037 12.4 0.0 0.037 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) TrmB PF01978.19 gi|145591315|ref|YP_001153317.1| - 0.05 13.5 0.0 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DprA_WH PF17782.1 gi|145591315|ref|YP_001153317.1| - 0.064 13.4 0.1 0.31 11.2 0.1 2.0 1 1 0 1 1 1 0 DprA winged helix domain HTH_12 PF08461.10 gi|145591315|ref|YP_001153317.1| - 0.066 13.2 0.1 0.15 12.1 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|145591315|ref|YP_001153317.1| - 0.081 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.10 gi|145591315|ref|YP_001153317.1| - 0.1 12.4 0.1 0.27 11.1 0.1 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HEPN PF05168.14 gi|145591316|ref|YP_001153318.1| - 2.9e-27 95.1 0.9 3.6e-27 94.9 0.9 1.0 1 0 0 1 1 1 1 HEPN domain TPR_2 PF07719.17 gi|145591316|ref|YP_001153318.1| - 4.6 7.6 6.6 6.5 7.1 2.5 2.8 2 1 1 3 3 3 0 Tetratricopeptide repeat NTP_transf_2 PF01909.23 gi|145591317|ref|YP_001153319.1| - 7e-09 35.9 0.0 8.4e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591317|ref|YP_001153319.1| - 3.2e-06 27.1 0.0 4.5e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Fer4_14 PF13394.6 gi|145591319|ref|YP_001153321.1| - 1.6e-11 44.3 0.0 2.3e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|145591319|ref|YP_001153321.1| - 1.1e-09 39.0 0.0 1.2e-09 38.8 0.0 1.3 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145591319|ref|YP_001153321.1| - 5.3e-09 36.5 0.0 7.3e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-CHCC PF10276.9 gi|145591319|ref|YP_001153321.1| - 0.0049 16.9 0.4 0.0092 16.0 0.4 1.4 1 0 0 1 1 1 1 Zinc-finger domain TIP49_C PF17856.1 gi|145591320|ref|YP_001153322.1| - 0.0048 17.0 1.0 1.9 8.7 0.0 2.0 1 1 1 2 2 2 2 TIP49 AAA-lid domain Peptidase_M19 PF01244.21 gi|145591321|ref|YP_001153323.1| - 2.3e-82 276.7 0.0 2.6e-82 276.6 0.0 1.0 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Amidohydro_2 PF04909.14 gi|145591321|ref|YP_001153323.1| - 5.6e-07 29.6 0.2 1.3e-06 28.5 0.2 1.6 1 1 0 1 1 1 1 Amidohydrolase DUF996 PF06195.13 gi|145591322|ref|YP_001153324.1| - 1e-29 103.5 18.6 1e-29 103.5 18.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF996) Deltameth_res PF16020.5 gi|145591322|ref|YP_001153324.1| - 0.23 11.4 0.1 0.23 11.4 0.1 3.0 3 1 1 4 4 4 0 Deltamethrin resistance DUF1430 PF07242.11 gi|145591322|ref|YP_001153324.1| - 0.79 10.0 13.6 0.066 13.5 2.2 3.0 1 1 1 3 3 3 0 Protein of unknown function (DUF1430) Bax1-I PF01027.20 gi|145591322|ref|YP_001153324.1| - 1.3 8.8 24.4 0.49 10.2 20.3 2.2 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4064 PF13273.6 gi|145591322|ref|YP_001153324.1| - 1.5 9.2 25.1 0.11 12.8 7.3 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF2730 PF10805.8 gi|145591322|ref|YP_001153324.1| - 7.3 6.8 5.3 1.6 8.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DHHC PF01529.20 gi|145591322|ref|YP_001153324.1| - 8.7 6.5 9.3 7.8 6.6 2.2 2.3 1 1 1 2 2 2 0 DHHC palmitoyltransferase PaREP1 PF05942.11 gi|145591323|ref|YP_001153325.1| - 1.4e-27 95.9 2.0 1.8e-27 95.6 2.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|145591323|ref|YP_001153325.1| - 0.17 12.0 7.1 2.4 8.3 3.0 2.1 2 0 0 2 2 2 0 HEPN domain tRNA-synt_2 PF00152.20 gi|145591325|ref|YP_001153327.1| - 8.7e-58 195.9 0.0 9.9e-58 195.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) Gln-synt_C PF00120.24 gi|145591326|ref|YP_001153328.1| - 5.3e-97 324.9 0.0 6.6e-97 324.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|145591326|ref|YP_001153328.1| - 1.3e-11 44.1 0.0 2.3e-11 43.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GATase_6 PF13522.6 gi|145591327|ref|YP_001153329.1| - 6.9e-12 45.7 0.0 1.2e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|145591327|ref|YP_001153329.1| - 1.9e-07 30.3 0.0 0.00035 19.6 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.6 gi|145591327|ref|YP_001153329.1| - 5.5e-05 23.1 0.0 8.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain MJ1316 PF04457.12 gi|145591327|ref|YP_001153329.1| - 0.029 15.1 0.0 0.051 14.3 0.0 1.3 1 0 0 1 1 1 0 MJ1316 RNA cyclic group end recognition domain GXGXG PF01493.19 gi|145591328|ref|YP_001153330.1| - 2.6e-18 66.3 23.8 1.4e-17 63.9 23.8 2.0 1 1 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|145591328|ref|YP_001153330.1| - 2.1e-08 34.4 0.0 4.4e-08 33.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|145591328|ref|YP_001153330.1| - 0.0006 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|145591328|ref|YP_001153330.1| - 0.00061 18.6 0.1 0.85 8.3 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|145591329|ref|YP_001153331.1| - 1.9e-95 320.1 3.3 6.7e-89 298.6 0.7 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|145591329|ref|YP_001153331.1| - 6.1e-09 35.4 6.1 0.0017 17.5 0.1 3.7 3 0 0 3 3 3 3 FMN-dependent dehydrogenase Glu_syn_central PF04898.14 gi|145591329|ref|YP_001153331.1| - 1.5e-08 34.5 0.1 0.092 12.2 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain DHO_dh PF01180.21 gi|145591329|ref|YP_001153331.1| - 0.014 14.6 3.7 11 5.1 0.0 3.4 3 1 0 3 3 3 0 Dihydroorotate dehydrogenase IMPDH PF00478.25 gi|145591329|ref|YP_001153331.1| - 1.9 7.4 5.4 3.9 6.4 1.5 2.6 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Polbeta PF18765.1 gi|145591330|ref|YP_001153332.1| - 0.00013 22.0 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145591330|ref|YP_001153332.1| - 0.16 12.3 0.0 0.27 11.5 0.0 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase domain DUF86 PF01934.17 gi|145591331|ref|YP_001153333.1| - 3.8e-14 52.6 0.0 4.5e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 DUF2250 PF10007.9 gi|145591331|ref|YP_001153333.1| - 0.046 13.8 0.0 0.14 12.2 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B_2 PF12706.7 gi|145591332|ref|YP_001153334.1| - 9.6e-25 87.3 0.8 1.1e-24 87.1 0.8 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591332|ref|YP_001153334.1| - 1e-11 45.2 0.3 1.6e-11 44.6 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|145591332|ref|YP_001153334.1| - 0.00091 19.2 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PDEase_II PF02112.15 gi|145591332|ref|YP_001153334.1| - 0.24 10.5 0.0 0.36 9.9 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II ABC_tran PF00005.27 gi|145591333|ref|YP_001153335.1| - 8.8e-37 126.7 0.0 1.2e-36 126.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591333|ref|YP_001153335.1| - 3.5e-09 36.9 0.6 0.00037 20.4 0.1 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|145591333|ref|YP_001153335.1| - 4.5e-08 33.1 0.0 1.4e-07 31.6 0.0 1.9 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|145591333|ref|YP_001153335.1| - 3e-06 26.9 0.0 0.011 15.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591333|ref|YP_001153335.1| - 0.0008 20.0 0.1 0.0018 18.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145591333|ref|YP_001153335.1| - 0.003 18.0 0.1 0.0052 17.2 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|145591333|ref|YP_001153335.1| - 0.0055 16.9 0.0 0.026 14.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|145591333|ref|YP_001153335.1| - 0.0059 16.5 0.2 0.055 13.4 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_29 PF13555.6 gi|145591333|ref|YP_001153335.1| - 0.0071 16.1 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|145591333|ref|YP_001153335.1| - 0.0078 16.0 0.1 0.048 13.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|145591333|ref|YP_001153335.1| - 0.022 15.0 0.5 0.065 13.5 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|145591333|ref|YP_001153335.1| - 0.035 12.7 0.0 0.21 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|145591333|ref|YP_001153335.1| - 0.037 14.4 0.1 0.22 12.0 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|145591333|ref|YP_001153335.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase cobW PF02492.19 gi|145591333|ref|YP_001153335.1| - 0.068 12.8 0.5 0.14 11.7 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|145591333|ref|YP_001153335.1| - 0.08 13.5 0.1 0.17 12.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145591333|ref|YP_001153335.1| - 0.093 12.7 0.1 1.7 8.7 0.1 2.6 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|145591333|ref|YP_001153335.1| - 0.094 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|145591333|ref|YP_001153335.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DLIC PF05783.11 gi|145591333|ref|YP_001153335.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) DUF148 PF02520.17 gi|145591333|ref|YP_001153335.1| - 0.13 12.4 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 AAA_24 PF13479.6 gi|145591333|ref|YP_001153335.1| - 0.19 11.4 0.1 0.43 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|145591333|ref|YP_001153335.1| - 0.22 11.2 0.8 4.9 6.8 0.1 2.7 2 1 1 3 3 3 0 Cytidylate kinase BPD_transp_1 PF00528.22 gi|145591334|ref|YP_001153336.1| - 5.3e-21 75.2 40.6 3.1e-12 46.6 16.7 3.9 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.25 gi|145591335|ref|YP_001153337.1| - 2.7e-27 96.6 4.3 4.1e-27 96.0 4.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|145591335|ref|YP_001153337.1| - 1.5e-24 87.3 0.4 2.2e-24 86.7 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|145591335|ref|YP_001153337.1| - 0.073 12.8 0.0 10 5.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF853 PF05872.12 gi|145591336|ref|YP_001153338.1| - 3.8e-11 42.3 1.2 3.1e-05 22.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.17 gi|145591336|ref|YP_001153338.1| - 2.6e-08 34.2 0.0 9.1e-08 32.5 0.0 1.9 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|145591336|ref|YP_001153338.1| - 1.2e-07 32.1 0.1 0.0068 16.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain FtsK_SpoIIIE PF01580.18 gi|145591336|ref|YP_001153338.1| - 3.2e-06 26.7 0.2 0.0017 17.8 0.0 2.5 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|145591336|ref|YP_001153338.1| - 3.3e-06 27.6 2.0 7.5e-05 23.2 2.0 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|145591336|ref|YP_001153338.1| - 3.7e-06 27.4 0.2 0.0065 16.9 0.1 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|145591336|ref|YP_001153338.1| - 6.2e-05 22.1 0.1 0.00019 20.5 0.0 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|145591336|ref|YP_001153338.1| - 0.00025 20.6 0.0 0.00063 19.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_10 PF12846.7 gi|145591336|ref|YP_001153338.1| - 0.0019 17.2 0.0 0.63 8.9 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain NACHT PF05729.12 gi|145591336|ref|YP_001153338.1| - 0.0019 18.1 0.1 0.0036 17.2 0.1 1.4 1 0 0 1 1 1 1 NACHT domain Zot PF05707.12 gi|145591336|ref|YP_001153338.1| - 0.0033 17.1 0.0 0.017 14.8 0.0 2.0 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DUF2075 PF09848.9 gi|145591336|ref|YP_001153338.1| - 0.0035 16.6 0.2 0.51 9.5 0.1 2.2 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.6 gi|145591336|ref|YP_001153338.1| - 0.0045 17.2 0.4 0.012 15.8 0.1 1.9 2 0 0 2 2 2 1 AAA domain T2SSE PF00437.20 gi|145591336|ref|YP_001153338.1| - 0.006 15.7 0.0 0.013 14.6 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.15 gi|145591336|ref|YP_001153338.1| - 0.014 15.4 0.0 0.094 12.7 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|145591336|ref|YP_001153338.1| - 0.019 14.9 0.1 0.039 14.0 0.1 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase PF01078.21 gi|145591336|ref|YP_001153338.1| - 0.02 14.3 0.0 0.036 13.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|145591336|ref|YP_001153338.1| - 0.023 15.2 0.0 0.047 14.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145591336|ref|YP_001153338.1| - 0.027 13.7 0.1 0.054 12.8 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_5 PF07728.14 gi|145591336|ref|YP_001153338.1| - 0.03 14.3 0.1 0.097 12.7 0.1 1.9 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|145591336|ref|YP_001153338.1| - 0.065 12.9 0.3 0.45 10.2 0.2 2.1 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|145591336|ref|YP_001153338.1| - 0.074 12.2 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_8 PF12780.7 gi|145591336|ref|YP_001153338.1| - 0.075 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 DEAD PF00270.29 gi|145591336|ref|YP_001153338.1| - 0.076 12.8 0.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase IPT PF01745.16 gi|145591336|ref|YP_001153338.1| - 0.088 12.2 0.1 0.18 11.2 0.1 1.5 1 0 0 1 1 1 0 Isopentenyl transferase AAA_28 PF13521.6 gi|145591336|ref|YP_001153338.1| - 0.089 13.0 0.1 0.2 11.9 0.1 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|145591336|ref|YP_001153338.1| - 0.09 11.9 0.1 0.16 11.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) cobW PF02492.19 gi|145591336|ref|YP_001153338.1| - 0.093 12.3 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|145591336|ref|YP_001153338.1| - 0.13 12.8 0.0 0.29 11.7 0.0 1.5 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|145591336|ref|YP_001153338.1| - 0.16 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_19 PF13245.6 gi|145591336|ref|YP_001153338.1| - 0.17 12.2 0.1 0.36 11.2 0.1 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|145591336|ref|YP_001153338.1| - 0.19 11.6 0.0 0.42 10.5 0.0 1.5 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|145591336|ref|YP_001153338.1| - 0.22 11.5 0.1 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain Cas_APE2256 PF09651.10 gi|145591337|ref|YP_001153339.1| - 9.8e-32 109.7 0.0 1.3e-31 109.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) Cas_APE2256 PF09651.10 gi|145591338|ref|YP_001153340.1| - 9.8e-06 25.5 0.0 1.5e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) RuvA_C PF07499.13 gi|145591338|ref|YP_001153340.1| - 0.014 15.9 1.9 1.2 9.6 0.4 2.5 2 0 0 2 2 2 0 RuvA, C-terminal domain NurA PF09376.10 gi|145591339|ref|YP_001153341.1| - 3e-11 43.5 0.0 3.9e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 NurA domain AAA_21 PF13304.6 gi|145591341|ref|YP_001153343.1| - 1.3e-17 64.6 0.1 1.6e-09 38.0 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|145591341|ref|YP_001153343.1| - 1.7e-07 31.3 0.0 0.0012 18.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain ABC_tran PF00005.27 gi|145591341|ref|YP_001153343.1| - 1.2e-06 29.1 0.0 5.7e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|145591341|ref|YP_001153343.1| - 0.00031 20.3 0.0 0.00038 20.0 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591341|ref|YP_001153343.1| - 0.00049 20.7 0.0 0.00061 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145591341|ref|YP_001153343.1| - 0.0018 18.0 0.1 0.0036 17.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RuvB_N PF05496.12 gi|145591341|ref|YP_001153343.1| - 0.057 13.2 0.1 0.38 10.5 0.0 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATPase_2 PF01637.18 gi|145591341|ref|YP_001153343.1| - 0.061 13.2 0.1 0.095 12.6 0.1 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|145591341|ref|YP_001153343.1| - 0.086 12.6 0.0 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|145591341|ref|YP_001153343.1| - 0.087 12.7 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase RAMPs PF03787.15 gi|145591342|ref|YP_001153344.1| - 6.4e-06 26.4 0.0 0.0013 18.8 0.0 2.2 2 0 0 2 2 2 2 RAMP superfamily RAMPs PF03787.15 gi|145591343|ref|YP_001153345.1| - 6.2e-06 26.4 0.0 8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 RAMP superfamily Cas_Cmr5 PF09701.10 gi|145591344|ref|YP_001153346.1| - 0.00083 19.6 0.3 0.0024 18.2 0.3 1.7 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cmr5) DUF2385 PF09539.10 gi|145591344|ref|YP_001153346.1| - 0.087 13.4 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) RAMPs PF03787.15 gi|145591345|ref|YP_001153347.1| - 1e-24 87.8 0.0 1.2e-24 87.5 0.0 1.1 1 0 0 1 1 1 1 RAMP superfamily DUF3692 PF12469.8 gi|145591346|ref|YP_001153348.1| - 5.4e-21 74.9 0.0 1.2e-20 73.7 0.0 1.6 1 0 0 1 1 1 1 CRISPR-associated protein mCpol PF18182.1 gi|145591346|ref|YP_001153348.1| - 0.062 13.6 0.0 6.3 7.2 0.0 2.7 2 0 0 2 2 2 0 minimal CRISPR polymerase domain NUMOD3 PF07460.11 gi|145591346|ref|YP_001153348.1| - 0.22 11.8 0.0 0.44 10.8 0.0 1.5 1 0 0 1 1 1 0 NUMOD3 motif (2 copies) Cas_Cmr3 PF09700.10 gi|145591347|ref|YP_001153349.1| - 8.3e-08 32.0 1.0 2.9e-06 26.9 0.1 2.1 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) Cas_Cas5d PF09704.10 gi|145591347|ref|YP_001153349.1| - 0.03 14.2 0.1 0.037 13.9 0.1 1.2 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) Cas_DxTHG PF09455.10 gi|145591348|ref|YP_001153350.1| - 4.8e-12 46.1 0.0 1.3e-09 38.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated (Cas) DxTHG family Cas_Cas4 PF01930.17 gi|145591349|ref|YP_001153351.1| - 3.7e-13 49.9 0.0 4.9e-13 49.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|145591349|ref|YP_001153351.1| - 3.8e-08 33.5 0.4 2.8e-07 30.7 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily HTH_31 PF13560.6 gi|145591349|ref|YP_001153351.1| - 0.061 13.7 0.0 8.1 6.9 0.1 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain CRISPR_Cas2 PF09827.9 gi|145591350|ref|YP_001153352.1| - 2.4e-16 59.7 0.0 2.7e-16 59.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Ribosomal_L30 PF00327.20 gi|145591350|ref|YP_001153352.1| - 0.0057 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S24e PF01282.19 gi|145591350|ref|YP_001153352.1| - 0.062 13.3 0.1 12 5.9 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S24e DUF5042 PF16445.5 gi|145591350|ref|YP_001153352.1| - 0.078 11.3 0.0 0.094 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5042) Cas_Cas1 PF01867.16 gi|145591351|ref|YP_001153353.1| - 1.8e-56 191.4 0.0 2.1e-56 191.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Csa1 PF06023.12 gi|145591352|ref|YP_001153354.1| - 5.7e-92 308.2 0.0 6.8e-92 307.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 TrmB PF01978.19 gi|145591353|ref|YP_001153355.1| - 2.3e-07 30.6 0.1 6.4e-07 29.2 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|145591353|ref|YP_001153355.1| - 3.7e-07 29.8 1.3 1.1e-06 28.4 0.0 2.4 3 1 0 3 3 3 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|145591353|ref|YP_001153355.1| - 1.8e-06 27.9 0.4 4.6e-06 26.6 0.4 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|145591353|ref|YP_001153355.1| - 1.9e-06 27.8 0.0 4.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_24 PF13412.6 gi|145591353|ref|YP_001153355.1| - 2.2e-05 23.9 0.0 3.9e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145591353|ref|YP_001153355.1| - 3.8e-05 23.5 0.0 0.0002 21.1 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|145591353|ref|YP_001153355.1| - 4.4e-05 23.5 0.5 9e-05 22.5 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|145591353|ref|YP_001153355.1| - 0.00025 20.9 2.2 0.00034 20.4 0.2 2.2 2 1 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|145591353|ref|YP_001153355.1| - 0.0012 18.7 0.1 0.0028 17.6 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|145591353|ref|YP_001153355.1| - 0.0023 17.8 0.0 0.0047 16.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|145591353|ref|YP_001153355.1| - 0.0043 16.9 0.0 0.0086 16.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|145591353|ref|YP_001153355.1| - 0.0065 16.4 0.0 0.014 15.3 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|145591353|ref|YP_001153355.1| - 0.0071 16.1 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|145591353|ref|YP_001153355.1| - 0.01 16.0 0.1 0.047 13.9 0.0 2.1 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|145591353|ref|YP_001153355.1| - 0.021 14.8 0.0 0.05 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Rrf2 PF02082.20 gi|145591353|ref|YP_001153355.1| - 0.023 15.1 0.2 0.076 13.4 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator LPD22 PF18834.1 gi|145591353|ref|YP_001153355.1| - 0.024 14.8 0.0 0.052 13.8 0.0 1.6 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 HTH_AsnC-type PF13404.6 gi|145591353|ref|YP_001153355.1| - 0.027 14.3 0.5 0.094 12.6 0.0 2.2 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_47 PF16221.5 gi|145591353|ref|YP_001153355.1| - 0.036 13.6 0.1 0.1 12.2 0.1 1.8 2 0 0 2 2 1 0 winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|145591353|ref|YP_001153355.1| - 0.038 13.8 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 LexA DNA binding domain HTH_17 PF12728.7 gi|145591353|ref|YP_001153355.1| - 0.043 14.0 0.1 0.11 12.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain FUR PF01475.19 gi|145591353|ref|YP_001153355.1| - 0.054 13.6 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family DprA_WH PF17782.1 gi|145591353|ref|YP_001153355.1| - 0.07 13.3 0.6 0.07 13.3 0.6 1.9 2 0 0 2 2 1 0 DprA winged helix domain HTH_Tnp_ISL3 PF13542.6 gi|145591353|ref|YP_001153355.1| - 0.07 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|145591353|ref|YP_001153355.1| - 0.074 12.9 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain Cdc6_C PF09079.11 gi|145591353|ref|YP_001153355.1| - 0.093 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_30 PF13556.6 gi|145591353|ref|YP_001153355.1| - 0.099 12.5 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|145591353|ref|YP_001153355.1| - 0.11 12.2 0.0 1.6 8.4 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 RP-C PF03428.13 gi|145591353|ref|YP_001153355.1| - 0.12 12.0 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain TnsD PF15978.5 gi|145591353|ref|YP_001153355.1| - 0.12 11.3 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_40 PF14493.6 gi|145591353|ref|YP_001153355.1| - 0.15 12.6 0.0 0.3 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain ALO PF04030.14 gi|145591354|ref|YP_001153356.1| - 0.026 14.3 0.0 0.031 14.1 0.0 1.0 1 0 0 1 1 1 0 D-arabinono-1,4-lactone oxidase DUF4398 PF14346.6 gi|145591354|ref|YP_001153356.1| - 1.6 9.4 9.4 7 7.3 9.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) DevR PF01905.16 gi|145591355|ref|YP_001153357.1| - 1e-79 267.4 0.0 1.2e-79 267.1 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.10 gi|145591356|ref|YP_001153358.1| - 0.014 15.3 0.1 0.047 13.6 0.1 1.9 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) Antimicrobial_8 PF08103.11 gi|145591356|ref|YP_001153358.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Uperin family Helicase_C PF00271.31 gi|145591358|ref|YP_001153360.1| - 1.4e-07 31.8 0.0 2.8e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|145591358|ref|YP_001153360.1| - 0.00083 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|145591358|ref|YP_001153360.1| - 0.00092 19.0 0.1 0.011 15.5 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase ATPgrasp_Ter PF15632.6 gi|145591358|ref|YP_001153360.1| - 0.064 13.0 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 ATP-grasp in the biosynthetic pathway with Ter operon HD PF01966.22 gi|145591359|ref|YP_001153361.1| - 9.7e-07 29.0 0.1 1.5e-06 28.4 0.1 1.4 1 0 0 1 1 1 1 HD domain HD_6 PF18019.1 gi|145591359|ref|YP_001153361.1| - 3.1e-05 24.2 0.1 7.2e-05 23.0 0.1 1.7 1 1 0 1 1 1 1 HD domain PaREP1 PF05942.11 gi|145591360|ref|YP_001153362.1| - 4.5e-22 78.1 1.6 5.9e-22 77.8 1.6 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family CRISPR_Cas6 PF10040.9 gi|145591361|ref|YP_001153363.1| - 2.7e-15 56.8 2.2 3.5e-15 56.4 0.9 1.8 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 Cas_DxTHG PF09455.10 gi|145591362|ref|YP_001153364.1| - 3.2e-11 43.4 0.0 4.2e-10 39.8 0.0 2.0 1 1 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family HEPN PF05168.14 gi|145591364|ref|YP_001153366.1| - 2.4e-34 118.0 3.2 2.9e-34 117.7 3.2 1.0 1 0 0 1 1 1 1 HEPN domain HEPN_AbiV PF18728.1 gi|145591364|ref|YP_001153366.1| - 0.27 11.4 3.6 0.15 12.2 1.2 1.8 2 0 0 2 2 2 0 AbiV NTP_transf_2 PF01909.23 gi|145591365|ref|YP_001153367.1| - 1.4e-08 34.9 0.0 1.8e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591365|ref|YP_001153367.1| - 2.3e-06 27.6 0.0 3e-06 27.2 0.0 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Mn_catalase PF05067.12 gi|145591368|ref|YP_001153370.1| - 1.3e-77 260.6 0.0 1.5e-77 260.4 0.0 1.0 1 0 0 1 1 1 1 Manganese containing catalase Ferritin-like PF12902.7 gi|145591368|ref|YP_001153370.1| - 0.01 15.7 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 Ferritin-like CRISPR_Cas2 PF09827.9 gi|145591370|ref|YP_001153372.1| - 1.4e-05 25.2 0.0 1.6e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Csa1 PF06023.12 gi|145591371|ref|YP_001153373.1| - 1.8e-90 303.3 0.0 2.2e-90 303.0 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 DUF3782 PF12644.7 gi|145591372|ref|YP_001153374.1| - 1.6e-16 60.2 2.5 1.1e-15 57.5 0.5 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3782) PDDEXK_10 PF07788.11 gi|145591372|ref|YP_001153374.1| - 3.1e-08 33.4 3.3 6.4e-08 32.4 3.3 1.6 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF4143 PF13635.6 gi|145591372|ref|YP_001153374.1| - 0.044 13.9 0.1 0.082 13.1 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Apolipoprotein PF01442.18 gi|145591372|ref|YP_001153374.1| - 0.061 13.2 2.0 0.099 12.5 2.0 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain NERD PF08378.11 gi|145591372|ref|YP_001153374.1| - 0.1 13.1 0.1 0.25 11.8 0.1 1.8 1 0 0 1 1 1 0 Nuclease-related domain Spectrin PF00435.21 gi|145591372|ref|YP_001153374.1| - 0.1 13.1 1.6 2.9 8.4 0.3 2.6 2 1 1 3 3 3 0 Spectrin repeat CcdA PF07362.12 gi|145591372|ref|YP_001153374.1| - 0.14 12.6 3.3 3.2 8.2 0.0 3.0 2 1 1 3 3 3 0 Post-segregation antitoxin CcdA FAM25 PF15825.5 gi|145591372|ref|YP_001153374.1| - 0.15 12.4 1.2 0.54 10.6 0.5 2.2 2 0 0 2 2 2 0 FAM25 family SecE PF00584.20 gi|145591373|ref|YP_001153375.1| - 0.0023 17.8 5.7 0.12 12.3 0.3 2.3 2 0 0 2 2 2 2 SecE/Sec61-gamma subunits of protein translocation complex DUF2417 PF10329.9 gi|145591373|ref|YP_001153375.1| - 0.0098 15.3 1.9 0.011 15.2 1.9 1.0 1 0 0 1 1 1 1 Region of unknown function (DUF2417) MIOX PF05153.15 gi|145591373|ref|YP_001153375.1| - 0.16 11.5 0.0 0.17 11.4 0.0 1.0 1 0 0 1 1 1 0 Myo-inositol oxygenase UPF0102 PF02021.17 gi|145591374|ref|YP_001153376.1| - 0.025 14.8 1.2 0.055 13.7 0.2 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0102 Tropomyosin PF00261.20 gi|145591374|ref|YP_001153376.1| - 0.041 13.2 3.6 0.074 12.4 3.6 1.4 1 0 0 1 1 1 0 Tropomyosin ERM PF00769.19 gi|145591374|ref|YP_001153376.1| - 0.16 11.8 4.9 0.19 11.5 4.9 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family NERD PF08378.11 gi|145591374|ref|YP_001153376.1| - 0.75 10.3 0.1 0.75 10.3 0.1 2.7 1 1 0 2 2 2 0 Nuclease-related domain ARGLU PF15346.6 gi|145591374|ref|YP_001153376.1| - 4.3 7.2 18.2 21 4.9 15.8 2.6 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 DUF1697 PF08002.11 gi|145591376|ref|YP_001153378.1| - 0.013 16.0 0.1 0.018 15.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1697) NTP_transf_2 PF01909.23 gi|145591377|ref|YP_001153379.1| - 1.1e-06 28.8 0.1 1.5e-06 28.4 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591377|ref|YP_001153379.1| - 3.2e-05 23.9 0.0 4.2e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|145591377|ref|YP_001153379.1| - 0.04 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DUF3150 PF11348.8 gi|145591378|ref|YP_001153380.1| - 0.028 13.6 0.4 0.037 13.3 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) DUF463 PF04317.12 gi|145591378|ref|YP_001153380.1| - 0.081 11.8 2.9 0.11 11.4 2.9 1.1 1 0 0 1 1 1 0 YcjX-like family, DUF463 DUF3933 PF13069.6 gi|145591380|ref|YP_001153382.1| - 0.036 13.9 0.1 0.076 12.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3933) PaREP1 PF05942.11 gi|145591381|ref|YP_001153383.1| - 5.8e-25 87.5 1.7 7.7e-25 87.1 1.7 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family MIT PF04212.18 gi|145591381|ref|YP_001153383.1| - 0.019 15.0 0.7 1.2 9.2 0.3 2.5 2 1 1 3 3 3 0 MIT (microtubule interacting and transport) domain RAMPs PF03787.15 gi|145591382|ref|YP_001153384.1| - 3.1e-10 40.5 0.1 1.2e-09 38.5 0.1 1.9 1 1 0 1 1 1 1 RAMP superfamily AFOR_C PF01314.18 gi|145591385|ref|YP_001153387.1| - 8.8e-96 321.2 0.0 1.2e-95 320.8 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|145591385|ref|YP_001153387.1| - 7.9e-67 225.0 1.4 1.3e-66 224.3 1.4 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Metallophos PF00149.28 gi|145591387|ref|YP_001153389.1| - 1.5e-14 55.0 1.6 2.7e-14 54.1 1.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|145591387|ref|YP_001153389.1| - 0.00052 20.2 0.7 0.003 17.8 0.7 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TolA_bind_tri PF16331.5 gi|145591388|ref|YP_001153390.1| - 2.3e-05 24.4 5.6 0.0044 17.1 0.6 2.2 1 1 1 2 2 2 2 TolA binding protein trimerisation ABC_transp_aux PF09822.9 gi|145591388|ref|YP_001153390.1| - 8.4e-05 22.2 0.0 0.00021 20.8 0.0 1.7 2 0 0 2 2 1 1 ABC-type uncharacterized transport system DUF1664 PF07889.12 gi|145591388|ref|YP_001153390.1| - 0.00023 21.2 1.9 0.0028 17.7 0.2 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|145591388|ref|YP_001153390.1| - 0.00028 19.9 1.0 0.00044 19.2 1.0 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein PspA_IM30 PF04012.12 gi|145591388|ref|YP_001153390.1| - 0.00064 19.4 3.3 0.00064 19.4 3.3 1.6 1 1 1 2 2 2 1 PspA/IM30 family NPV_P10 PF05531.12 gi|145591388|ref|YP_001153390.1| - 0.001 19.5 6.5 0.12 12.8 5.7 2.4 1 1 1 2 2 2 2 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|145591388|ref|YP_001153390.1| - 0.0016 18.8 13.5 7.3 7.1 10.6 3.3 1 1 1 2 2 2 0 Lipoprotein leucine-zipper HsbA PF12296.8 gi|145591388|ref|YP_001153390.1| - 0.0021 18.5 6.0 0.0036 17.7 5.0 1.9 1 1 0 1 1 1 1 Hydrophobic surface binding protein A Laminin_II PF06009.12 gi|145591388|ref|YP_001153390.1| - 0.0023 17.9 4.2 0.004 17.2 4.2 1.3 1 0 0 1 1 1 1 Laminin Domain II HrpB7 PF09486.10 gi|145591388|ref|YP_001153390.1| - 0.004 17.6 1.5 0.004 17.6 1.5 1.5 2 0 0 2 2 1 1 Bacterial type III secretion protein (HrpB7) Apolipoprotein PF01442.18 gi|145591388|ref|YP_001153390.1| - 0.0042 17.0 2.1 0.0068 16.3 2.1 1.2 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain ATG16 PF08614.11 gi|145591388|ref|YP_001153390.1| - 0.0058 16.9 3.2 0.0082 16.4 3.2 1.1 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) FliJ PF02050.16 gi|145591388|ref|YP_001153390.1| - 0.0065 16.7 2.1 0.013 15.7 2.1 1.5 1 1 0 1 1 1 1 Flagellar FliJ protein DUF16 PF01519.16 gi|145591388|ref|YP_001153390.1| - 0.007 16.8 2.3 0.012 16.1 1.8 1.6 1 1 0 1 1 1 1 Protein of unknown function DUF16 LXG PF04740.12 gi|145591388|ref|YP_001153390.1| - 0.0074 16.0 2.3 0.012 15.4 2.3 1.2 1 0 0 1 1 1 1 LXG domain of WXG superfamily DUF677 PF05055.12 gi|145591388|ref|YP_001153390.1| - 0.008 15.1 0.2 0.014 14.3 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF677) UPF0444 PF15475.6 gi|145591388|ref|YP_001153390.1| - 0.0093 16.2 1.6 0.028 14.7 0.1 2.5 2 1 1 3 3 2 1 Transmembrane protein C12orf23, UPF0444 COG6 PF06419.11 gi|145591388|ref|YP_001153390.1| - 0.0097 14.2 1.2 0.014 13.7 1.2 1.1 1 0 0 1 1 1 1 Conserved oligomeric complex COG6 WEMBL PF05701.11 gi|145591388|ref|YP_001153390.1| - 0.011 14.5 1.3 0.015 14.0 1.3 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light ADIP PF11559.8 gi|145591388|ref|YP_001153390.1| - 0.012 15.7 2.0 0.02 15.0 2.0 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.9 gi|145591388|ref|YP_001153390.1| - 0.014 15.7 0.8 0.032 14.5 0.8 1.6 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Atg14 PF10186.9 gi|145591388|ref|YP_001153390.1| - 0.016 14.3 0.5 0.024 13.7 0.5 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4349 PF14257.6 gi|145591388|ref|YP_001153390.1| - 0.017 14.6 4.3 0.036 13.5 4.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4349) DUF2730 PF10805.8 gi|145591388|ref|YP_001153390.1| - 0.018 15.1 0.2 0.064 13.4 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) Baculo_PEP_C PF04513.12 gi|145591388|ref|YP_001153390.1| - 0.019 15.0 9.7 0.071 13.2 9.7 1.8 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus COG2 PF06148.11 gi|145591388|ref|YP_001153390.1| - 0.021 14.9 2.6 0.34 11.0 1.6 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HAUS-augmin3 PF14932.6 gi|145591388|ref|YP_001153390.1| - 0.026 14.1 2.4 0.04 13.5 2.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 CENP-F_leu_zip PF10473.9 gi|145591388|ref|YP_001153390.1| - 0.026 14.5 0.8 0.11 12.5 0.5 1.7 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|145591388|ref|YP_001153390.1| - 0.027 12.0 0.7 0.036 11.6 0.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Sec34 PF04136.15 gi|145591388|ref|YP_001153390.1| - 0.029 14.3 0.6 0.048 13.5 0.6 1.3 1 0 0 1 1 1 0 Sec34-like family TPR_MLP1_2 PF07926.12 gi|145591388|ref|YP_001153390.1| - 0.03 14.4 3.0 0.1 12.7 2.7 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Gp58 PF07902.11 gi|145591388|ref|YP_001153390.1| - 0.031 12.6 3.7 0.044 12.1 3.7 1.1 1 0 0 1 1 1 0 gp58-like protein APG6_N PF17675.1 gi|145591388|ref|YP_001153390.1| - 0.034 14.7 0.2 0.054 14.0 0.2 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region PilJ PF13675.6 gi|145591388|ref|YP_001153390.1| - 0.034 14.2 2.3 0.064 13.3 2.3 1.4 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term IFT57 PF10498.9 gi|145591388|ref|YP_001153390.1| - 0.036 13.0 0.6 0.056 12.4 0.6 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 ZapB PF06005.12 gi|145591388|ref|YP_001153390.1| - 0.042 14.3 2.0 0.36 11.3 1.0 2.1 1 1 0 1 1 1 0 Cell division protein ZapB Allexi_40kDa PF05549.11 gi|145591388|ref|YP_001153390.1| - 0.047 13.2 0.2 0.069 12.6 0.2 1.1 1 0 0 1 1 1 0 Allexivirus 40kDa protein FlaC_arch PF05377.11 gi|145591388|ref|YP_001153390.1| - 0.062 13.7 0.5 0.32 11.4 0.5 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) DUF4795 PF16043.5 gi|145591388|ref|YP_001153390.1| - 0.065 12.8 1.6 0.21 11.1 1.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Phasin PF05597.11 gi|145591388|ref|YP_001153390.1| - 0.067 13.2 0.5 0.14 12.2 0.5 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1640 PF07798.11 gi|145591388|ref|YP_001153390.1| - 0.069 13.2 0.2 0.11 12.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) Filament PF00038.21 gi|145591388|ref|YP_001153390.1| - 0.069 12.7 0.9 0.1 12.2 0.9 1.2 1 0 0 1 1 1 0 Intermediate filament protein MAD PF05557.13 gi|145591388|ref|YP_001153390.1| - 0.072 11.5 0.7 0.096 11.0 0.7 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein Cob_adeno_trans PF01923.18 gi|145591388|ref|YP_001153390.1| - 0.075 13.2 0.4 0.14 12.3 0.4 1.4 1 0 0 1 1 1 0 Cobalamin adenosyltransferase DUF4446 PF14584.6 gi|145591388|ref|YP_001153390.1| - 0.086 12.8 0.1 1.1 9.2 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4446) TMF_TATA_bd PF12325.8 gi|145591388|ref|YP_001153390.1| - 0.094 12.9 0.4 0.23 11.7 0.3 1.5 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF812 PF05667.11 gi|145591388|ref|YP_001153390.1| - 0.098 11.5 0.6 0.15 11.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Mod_r PF07200.13 gi|145591388|ref|YP_001153390.1| - 0.1 12.7 0.5 0.17 12.0 0.5 1.3 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein COG5 PF10392.9 gi|145591388|ref|YP_001153390.1| - 0.1 12.8 1.0 1.5 9.0 0.3 2.1 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF1729 PF08354.10 gi|145591388|ref|YP_001153390.1| - 0.11 11.4 0.1 0.16 10.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1729) Phage_GP20 PF06810.11 gi|145591388|ref|YP_001153390.1| - 0.11 12.3 0.3 0.19 11.6 0.3 1.3 1 0 0 1 1 1 0 Phage minor structural protein GP20 Fez1 PF06818.15 gi|145591388|ref|YP_001153390.1| - 0.11 12.9 0.2 0.17 12.3 0.2 1.1 1 0 0 1 1 1 0 Fez1 Syntaxin PF00804.25 gi|145591388|ref|YP_001153390.1| - 0.12 12.0 0.2 0.17 11.5 0.2 1.2 1 0 0 1 1 1 0 Syntaxin DUF3502 PF12010.8 gi|145591388|ref|YP_001153390.1| - 0.13 12.9 0.6 0.78 10.4 0.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF3502) Seryl_tRNA_N PF02403.22 gi|145591388|ref|YP_001153390.1| - 0.13 12.5 1.8 0.29 11.4 1.8 1.5 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF2959 PF11172.8 gi|145591388|ref|YP_001153390.1| - 0.13 12.4 2.2 0.46 10.6 2.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) GAS PF13851.6 gi|145591388|ref|YP_001153390.1| - 0.13 11.6 1.1 0.22 10.9 1.1 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Amidase02_C PF12123.8 gi|145591388|ref|YP_001153390.1| - 0.14 11.9 0.0 0.3 10.8 0.0 1.5 1 0 0 1 1 1 0 N-acetylmuramoyl-l-alanine amidase DUF4988 PF16378.5 gi|145591388|ref|YP_001153390.1| - 0.14 11.8 1.2 12 5.5 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF5082 PF16888.5 gi|145591388|ref|YP_001153390.1| - 0.14 12.4 1.5 8.2 6.7 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) ABC_tran_CTD PF16326.5 gi|145591388|ref|YP_001153390.1| - 0.15 12.3 0.1 0.43 10.8 0.0 1.7 1 1 0 1 1 1 0 ABC transporter C-terminal domain HMMR_N PF15905.5 gi|145591388|ref|YP_001153390.1| - 0.16 11.4 1.3 0.23 10.9 1.3 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal YscO PF07321.12 gi|145591388|ref|YP_001153390.1| - 0.17 11.8 3.4 0.56 10.1 1.9 2.0 1 1 0 1 1 1 0 Type III secretion protein YscO EzrA PF06160.12 gi|145591388|ref|YP_001153390.1| - 0.18 10.0 0.6 0.24 9.6 0.6 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA SlyX PF04102.12 gi|145591388|ref|YP_001153390.1| - 0.18 12.4 7.0 0.54 10.9 1.3 2.5 1 1 1 2 2 2 0 SlyX AAA_13 PF13166.6 gi|145591388|ref|YP_001153390.1| - 0.19 10.3 0.7 0.26 9.9 0.7 1.1 1 0 0 1 1 1 0 AAA domain DUF4618 PF15397.6 gi|145591388|ref|YP_001153390.1| - 0.2 11.1 1.2 0.66 9.4 1.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) SKA1 PF07160.12 gi|145591388|ref|YP_001153390.1| - 0.21 11.4 1.4 0.4 10.5 1.4 1.4 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 SF-assemblin PF06705.11 gi|145591388|ref|YP_001153390.1| - 0.22 10.8 0.8 0.32 10.3 0.8 1.2 1 0 0 1 1 1 0 SF-assemblin/beta giardin PTRF_SDPR PF15237.6 gi|145591388|ref|YP_001153390.1| - 0.22 11.1 1.9 0.33 10.5 1.9 1.2 1 0 0 1 1 1 0 PTRF/SDPR family THOC7 PF05615.13 gi|145591388|ref|YP_001153390.1| - 0.23 11.7 0.5 0.53 10.6 0.5 1.5 1 1 0 1 1 1 0 Tho complex subunit 7 V-SNARE PF05008.15 gi|145591388|ref|YP_001153390.1| - 0.23 11.9 0.7 0.41 11.0 0.7 1.4 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus CwsA PF10814.8 gi|145591388|ref|YP_001153390.1| - 0.23 11.6 6.0 0.43 10.8 6.0 1.5 1 0 0 1 1 1 0 Cell wall synthesis protein CwsA DHR10 PF18595.1 gi|145591388|ref|YP_001153390.1| - 0.27 11.3 1.8 0.45 10.6 1.8 1.3 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF5344 PF17279.2 gi|145591388|ref|YP_001153390.1| - 0.29 11.7 4.3 0.11 13.1 1.5 1.7 2 0 0 2 2 1 0 Family of unknown function (DUF5344) CorA PF01544.18 gi|145591388|ref|YP_001153390.1| - 0.4 9.9 2.4 0.96 8.7 1.2 2.0 2 1 1 3 3 2 0 CorA-like Mg2+ transporter protein DivIC PF04977.15 gi|145591388|ref|YP_001153390.1| - 0.76 9.6 5.9 6.9 6.5 2.8 2.6 1 1 2 3 3 3 0 Septum formation initiator DUF4763 PF15960.5 gi|145591388|ref|YP_001153390.1| - 0.83 8.9 2.1 1.5 8.1 2.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) PP2C_2 PF13672.6 gi|145591388|ref|YP_001153390.1| - 0.87 9.2 4.0 1.6 8.3 0.0 2.7 3 0 0 3 3 3 0 Protein phosphatase 2C Fib_alpha PF08702.10 gi|145591388|ref|YP_001153390.1| - 0.89 9.7 2.7 4 7.6 2.5 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family MscS_porin PF12795.7 gi|145591388|ref|YP_001153390.1| - 1.4 8.4 9.9 2.5 7.6 9.9 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain End3 PF12761.7 gi|145591388|ref|YP_001153390.1| - 1.5 9.0 3.5 9.4 6.4 1.7 2.1 1 1 1 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 DUF2968 PF11180.8 gi|145591388|ref|YP_001153390.1| - 1.6 8.3 6.9 4.9 6.7 6.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2968) Alanine_zipper PF11839.8 gi|145591388|ref|YP_001153390.1| - 1.9 8.9 8.9 0.88 10.0 5.3 2.0 1 1 1 2 2 1 0 Alanine-zipper, major outer membrane lipoprotein DASH_Dad2 PF08654.10 gi|145591388|ref|YP_001153390.1| - 2.4 8.6 5.8 74 3.8 5.8 2.4 1 1 0 1 1 1 0 DASH complex subunit Dad2 SBP_bac_8 PF13416.6 gi|145591389|ref|YP_001153391.1| - 4.1e-18 66.2 2.7 4.1e-18 66.2 2.7 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|145591389|ref|YP_001153391.1| - 2.5e-15 56.6 0.3 4e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|145591389|ref|YP_001153391.1| - 1.3e-14 54.9 7.8 1.3e-14 54.9 7.8 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|145591389|ref|YP_001153391.1| - 0.00062 19.6 2.2 0.00089 19.1 0.7 1.9 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein Med13_C PF06333.12 gi|145591389|ref|YP_001153391.1| - 1.3 8.3 9.8 2 7.6 9.8 1.3 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain FAP PF07174.11 gi|145591389|ref|YP_001153391.1| - 5.5 6.3 29.8 25 4.2 24.2 3.3 3 0 0 3 3 3 0 Fibronectin-attachment protein (FAP) BPD_transp_1 PF00528.22 gi|145591390|ref|YP_001153392.1| - 5e-23 81.8 28.2 8.9e-15 54.9 6.3 3.8 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component Tmemb_170 PF10190.9 gi|145591390|ref|YP_001153392.1| - 0.0014 19.0 0.0 0.0014 19.0 0.0 4.0 3 1 0 3 3 3 1 Putative transmembrane protein 170 ABC_tran PF00005.27 gi|145591391|ref|YP_001153393.1| - 6e-36 124.0 0.0 8.8e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591391|ref|YP_001153393.1| - 7.7e-08 32.5 0.0 0.0013 18.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|145591391|ref|YP_001153393.1| - 1.9e-07 31.1 1.2 1.1e-06 28.7 0.1 2.8 2 2 1 3 3 3 1 TOBE domain AAA_16 PF13191.6 gi|145591391|ref|YP_001153393.1| - 0.00014 22.3 0.8 0.00034 21.0 0.8 1.7 1 1 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|145591391|ref|YP_001153393.1| - 0.00082 19.9 0.2 0.00082 19.9 0.2 2.6 3 0 0 3 3 3 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|145591391|ref|YP_001153393.1| - 0.0059 16.1 0.1 0.046 13.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|145591391|ref|YP_001153393.1| - 0.006 17.0 0.0 0.064 13.7 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|145591391|ref|YP_001153393.1| - 0.0083 16.4 0.5 0.023 14.9 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|145591391|ref|YP_001153393.1| - 0.0087 16.2 1.1 0.087 13.0 1.1 2.3 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|145591391|ref|YP_001153393.1| - 0.0088 16.0 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|145591391|ref|YP_001153393.1| - 0.024 14.6 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|145591391|ref|YP_001153393.1| - 0.03 14.2 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF5076 PF16826.5 gi|145591391|ref|YP_001153393.1| - 0.034 14.1 0.2 0.15 12.0 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5076) AAA_30 PF13604.6 gi|145591391|ref|YP_001153393.1| - 0.036 13.8 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|145591391|ref|YP_001153393.1| - 0.043 14.1 0.1 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|145591391|ref|YP_001153393.1| - 0.046 13.3 0.4 0.097 12.2 0.2 1.8 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|145591391|ref|YP_001153393.1| - 0.073 13.6 0.0 0.15 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145591391|ref|YP_001153393.1| - 0.094 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|145591391|ref|YP_001153393.1| - 0.097 11.4 1.0 0.73 8.6 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|145591391|ref|YP_001153393.1| - 0.13 11.4 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Rad17 PF03215.15 gi|145591391|ref|YP_001153393.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|145591391|ref|YP_001153393.1| - 0.17 11.6 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145591391|ref|YP_001153393.1| - 0.2 12.1 0.0 0.39 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain TOBE PF03459.17 gi|145591391|ref|YP_001153393.1| - 1.1 9.7 6.1 7.5 6.9 0.0 3.9 3 2 0 3 3 3 0 TOBE domain GTP_EFTU PF00009.27 gi|145591392|ref|YP_001153394.1| - 4.6e-24 85.1 0.9 7.3e-23 81.1 0.9 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|145591392|ref|YP_001153394.1| - 2.2e-18 66.3 0.2 4.1e-18 65.4 0.2 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|145591392|ref|YP_001153394.1| - 2.7e-09 37.3 0.3 7.3e-09 35.9 0.3 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|145591392|ref|YP_001153394.1| - 0.00092 19.2 0.1 0.0017 18.3 0.1 1.4 1 0 0 1 1 1 1 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|145591392|ref|YP_001153394.1| - 0.015 15.3 0.1 0.029 14.4 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain PduV-EutP PF10662.9 gi|145591392|ref|YP_001153394.1| - 0.034 13.9 3.0 0.1 12.3 0.0 2.7 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Asp_protease_2 PF13650.6 gi|145591393|ref|YP_001153395.1| - 9.3e-05 23.0 0.0 0.00012 22.7 0.0 1.3 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|145591393|ref|YP_001153395.1| - 0.00037 21.0 0.0 0.00052 20.5 0.0 1.3 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|145591393|ref|YP_001153395.1| - 0.07 13.4 0.0 0.077 13.3 0.0 1.3 1 1 0 1 1 1 0 Retroviral aspartyl protease BPD_transp_2 PF02653.16 gi|145591394|ref|YP_001153396.1| - 3.6e-19 69.0 31.8 1.3e-18 67.1 31.8 1.8 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component HlyIII PF03006.20 gi|145591394|ref|YP_001153396.1| - 6.9 6.3 10.8 0.49 10.1 0.7 2.8 2 1 0 2 2 2 0 Haemolysin-III related BPD_transp_2 PF02653.16 gi|145591395|ref|YP_001153397.1| - 1.2e-22 80.4 33.6 1.2e-22 80.4 33.6 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.27 gi|145591396|ref|YP_001153398.1| - 2.4e-48 164.1 0.0 2.1e-30 106.0 0.0 2.2 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|145591396|ref|YP_001153398.1| - 2.1e-07 31.1 0.8 0.018 14.9 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145591396|ref|YP_001153398.1| - 0.00047 19.8 0.0 0.0018 18.0 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|145591396|ref|YP_001153398.1| - 0.0057 16.4 0.8 0.028 14.1 0.2 2.3 2 1 0 2 2 2 1 AAA domain MukB PF04310.12 gi|145591396|ref|YP_001153398.1| - 0.0091 15.8 0.0 0.36 10.6 0.0 2.5 2 0 0 2 2 2 1 MukB N-terminal AAA_23 PF13476.6 gi|145591396|ref|YP_001153398.1| - 0.013 16.0 0.0 0.042 14.3 0.0 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|145591396|ref|YP_001153398.1| - 0.013 15.4 1.5 0.08 12.8 0.1 2.6 2 1 1 3 3 3 0 RsgA GTPase NTPase_1 PF03266.15 gi|145591396|ref|YP_001153398.1| - 0.031 14.2 0.9 0.88 9.5 0.8 2.4 2 0 0 2 2 2 0 NTPase SBP_bac_3 PF00497.20 gi|145591396|ref|YP_001153398.1| - 0.034 13.6 0.3 0.15 11.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 AAA_15 PF13175.6 gi|145591396|ref|YP_001153398.1| - 0.071 12.8 0.0 0.7 9.5 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain Bmp PF02608.14 gi|145591397|ref|YP_001153399.1| - 1.9e-33 115.7 0.0 2.6e-33 115.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_6 PF13458.6 gi|145591397|ref|YP_001153399.1| - 0.00045 20.0 3.4 0.0017 18.1 0.2 2.4 3 0 0 3 3 3 1 Periplasmic binding protein UCR_Fe-S_N PF10399.9 gi|145591397|ref|YP_001153399.1| - 0.16 11.3 0.9 0.35 10.2 0.9 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF234 PF03008.14 gi|145591398|ref|YP_001153400.1| - 1.1e-05 25.9 0.0 2.2e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function MCM_N PF14551.6 gi|145591398|ref|YP_001153400.1| - 0.075 13.6 0.1 91 3.7 0.0 3.2 2 1 1 3 3 3 0 MCM N-terminal domain AAA_14 PF13173.6 gi|145591398|ref|YP_001153400.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain YitT_membrane PF02588.15 gi|145591400|ref|YP_001153402.1| - 0.066 12.6 3.2 0.09 12.1 3.2 1.1 1 0 0 1 1 1 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DUF3267 PF11667.8 gi|145591401|ref|YP_001153403.1| - 4.8 7.5 10.7 0.61 10.4 3.1 2.4 1 1 1 2 2 2 0 Putative zincin peptidase PFO_beta_C PF12367.8 gi|145591402|ref|YP_001153404.1| - 3.7e-05 23.8 0.0 5.3e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal PaREP1 PF05942.11 gi|145591403|ref|YP_001153405.1| - 3.2e-13 49.6 0.5 4.3e-13 49.2 0.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family BPL_LplA_LipB PF03099.19 gi|145591404|ref|YP_001153406.1| - 1.7e-05 24.7 0.3 4e-05 23.5 0.3 1.6 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Radical_SAM PF04055.21 gi|145591405|ref|YP_001153407.1| - 4.8e-20 72.6 0.1 1e-19 71.6 0.1 1.5 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|145591405|ref|YP_001153407.1| - 0.0016 18.9 0.0 0.0035 17.7 0.0 1.6 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family 2-oxoacid_dh PF00198.23 gi|145591406|ref|YP_001153408.1| - 7.6e-86 287.3 0.1 9.9e-86 287.0 0.1 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|145591406|ref|YP_001153408.1| - 2.5e-21 75.3 2.0 2.5e-21 75.3 2.0 1.8 2 0 0 2 2 2 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|145591406|ref|YP_001153408.1| - 8.5e-17 61.2 3.0 9.6e-17 61.0 1.0 2.3 2 0 0 2 2 2 1 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|145591406|ref|YP_001153408.1| - 7.5e-13 48.1 0.4 3.9e-05 23.4 0.1 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|145591406|ref|YP_001153408.1| - 6e-05 23.7 2.5 0.34 11.6 0.0 2.8 2 1 1 3 3 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|145591406|ref|YP_001153408.1| - 0.00035 19.9 0.3 0.39 9.9 0.1 2.6 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion DUF2118 PF09891.9 gi|145591406|ref|YP_001153408.1| - 0.0007 19.6 0.2 0.0018 18.2 0.2 1.7 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) PTS_EIIA_1 PF00358.20 gi|145591406|ref|YP_001153408.1| - 0.0011 18.7 0.8 0.27 11.0 0.1 2.6 1 1 1 2 2 2 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|145591406|ref|YP_001153408.1| - 0.0015 18.0 0.3 0.0032 17.0 0.3 1.4 1 0 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.13 gi|145591406|ref|YP_001153408.1| - 0.021 14.5 1.4 1.5 8.5 0.0 2.8 2 1 0 3 3 3 0 Pyrimidine nucleoside phosphorylase C-terminal domain YqfD PF06898.11 gi|145591406|ref|YP_001153408.1| - 0.035 12.9 0.9 0.44 9.3 0.0 2.2 1 1 1 2 2 2 0 Putative stage IV sporulation protein YqfD QRPTase_N PF02749.16 gi|145591406|ref|YP_001153408.1| - 0.052 13.6 1.2 13 6.0 0.0 2.9 2 1 1 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain RnfC_N PF13375.6 gi|145591406|ref|YP_001153408.1| - 0.076 13.0 0.6 0.36 10.8 0.2 2.2 1 1 1 2 2 2 0 RnfC Barrel sandwich hybrid domain ATP-synt_ab_Xtn PF16886.5 gi|145591406|ref|YP_001153408.1| - 0.18 11.7 0.4 0.5 10.2 0.4 1.7 1 0 0 1 1 1 0 ATPsynthase alpha/beta subunit N-term extension Transket_pyr PF02779.24 gi|145591407|ref|YP_001153409.1| - 2e-51 174.2 0.0 3.4e-51 173.5 0.0 1.3 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|145591407|ref|YP_001153409.1| - 1e-36 125.5 1.3 2.1e-36 124.5 1.3 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|145591408|ref|YP_001153410.1| - 4.3e-69 232.8 0.0 4.9e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.21 gi|145591408|ref|YP_001153410.1| - 0.0015 18.3 1.5 0.013 15.2 1.5 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|145591408|ref|YP_001153410.1| - 0.026 13.7 0.0 0.04 13.1 0.0 1.2 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase Pirin PF02678.16 gi|145591410|ref|YP_001153412.1| - 1.3e-36 124.8 0.1 3.8e-36 123.3 0.1 1.7 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 gi|145591410|ref|YP_001153412.1| - 1.1e-25 90.0 0.0 1.5e-24 86.4 0.0 2.5 3 0 0 3 3 3 1 Pirin C-terminal cupin domain Cupin_3 PF05899.12 gi|145591410|ref|YP_001153412.1| - 0.1 12.3 0.2 0.33 10.7 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF861) Cupin_2 PF07883.11 gi|145591410|ref|YP_001153412.1| - 0.14 11.9 3.0 0.27 11.0 0.4 2.7 3 1 1 4 4 4 0 Cupin domain ATPase_2 PF01637.18 gi|145591412|ref|YP_001153414.1| - 1.4e-25 90.6 0.0 2.7e-25 89.7 0.0 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|145591412|ref|YP_001153414.1| - 3.5e-20 72.3 0.0 6.6e-20 71.4 0.0 1.4 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_22 PF13401.6 gi|145591412|ref|YP_001153414.1| - 1.1e-08 35.4 0.0 2.3e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|145591412|ref|YP_001153414.1| - 1.6e-06 28.2 0.0 3.7e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591412|ref|YP_001153414.1| - 0.0024 18.3 0.2 0.0057 17.0 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain HTH_5 PF01022.20 gi|145591412|ref|YP_001153414.1| - 0.0049 16.7 0.1 0.012 15.4 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Roc PF08477.13 gi|145591412|ref|YP_001153414.1| - 0.1 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase HTH_IclR PF09339.10 gi|145591412|ref|YP_001153414.1| - 0.13 12.1 0.1 0.3 10.9 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain AAA PF00004.29 gi|145591412|ref|YP_001153414.1| - 0.19 12.2 0.0 0.46 10.9 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SelB-wing_2 PF09106.11 gi|145591412|ref|YP_001153414.1| - 0.36 11.1 2.8 0.29 11.4 0.6 2.0 2 0 0 2 2 2 0 Elongation factor SelB, winged helix DUF58 PF01882.18 gi|145591414|ref|YP_001153416.1| - 7.1e-16 58.3 0.2 1.3e-15 57.4 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|145591415|ref|YP_001153417.1| - 2e-63 212.1 0.0 3e-63 211.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|145591415|ref|YP_001153417.1| - 4.1e-21 74.6 0.2 1e-20 73.4 0.0 1.8 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|145591415|ref|YP_001153417.1| - 4.8e-16 59.0 0.0 1.3e-15 57.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|145591415|ref|YP_001153417.1| - 1.5e-08 34.6 0.0 1.1e-05 25.3 0.0 2.2 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|145591415|ref|YP_001153417.1| - 4.4e-07 30.4 0.0 8.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|145591415|ref|YP_001153417.1| - 0.00029 20.3 0.1 0.032 13.6 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|145591415|ref|YP_001153417.1| - 0.0003 20.5 0.0 0.005 16.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|145591415|ref|YP_001153417.1| - 0.0014 17.8 0.0 0.0038 16.4 0.0 1.7 1 1 0 1 1 1 1 MCM P-loop domain AAA_18 PF13238.6 gi|145591415|ref|YP_001153417.1| - 0.0039 17.7 0.0 0.014 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|145591415|ref|YP_001153417.1| - 0.014 15.6 0.0 0.48 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|145591415|ref|YP_001153417.1| - 0.17 11.9 0.1 0.46 10.5 0.1 1.6 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Mg_chelatase_C PF13335.6 gi|145591415|ref|YP_001153417.1| - 0.17 12.5 0.0 0.49 11.1 0.0 1.7 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI C-terminal AAA_22 PF13401.6 gi|145591415|ref|YP_001153417.1| - 0.19 12.0 0.0 0.43 10.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|145591415|ref|YP_001153417.1| - 0.19 10.9 0.0 0.31 10.2 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain Transglut_core PF01841.19 gi|145591417|ref|YP_001153419.1| - 4.5e-20 72.2 0.0 6.8e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|145591417|ref|YP_001153419.1| - 8.5e-06 25.9 0.4 8.5e-06 25.9 0.4 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|145591417|ref|YP_001153419.1| - 0.00095 19.1 0.1 0.0025 17.7 0.1 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily PGPGW PF09656.10 gi|145591417|ref|YP_001153419.1| - 0.018 14.6 0.7 0.072 12.6 0.7 2.1 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) PEGA PF08308.11 gi|145591417|ref|YP_001153419.1| - 0.043 13.7 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 PEGA domain GYD PF08734.11 gi|145591418|ref|YP_001153420.1| - 2.5e-20 72.2 0.0 2.7e-20 72.1 0.0 1.0 1 0 0 1 1 1 1 GYD domain DUF697 PF05128.12 gi|145591419|ref|YP_001153421.1| - 0.025 14.3 1.1 0.025 14.3 1.1 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF697) Zip PF02535.22 gi|145591419|ref|YP_001153421.1| - 0.12 11.6 20.5 0.023 13.9 9.2 2.4 1 1 0 2 2 2 0 ZIP Zinc transporter Nitro_FeMo-Co PF02579.17 gi|145591420|ref|YP_001153422.1| - 5.5e-06 26.6 0.0 0.0083 16.4 0.0 2.2 1 1 1 2 2 2 2 Dinitrogenase iron-molybdenum cofactor Imm49 PF15575.6 gi|145591420|ref|YP_001153422.1| - 0.052 13.3 0.1 0.073 12.8 0.1 1.2 1 0 0 1 1 1 0 Immunity protein 49 Glyoxal_oxid_N PF07250.11 gi|145591420|ref|YP_001153422.1| - 0.19 10.9 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Glyoxal oxidase N-terminus AhpC-TSA PF00578.21 gi|145591421|ref|YP_001153423.1| - 1.6e-38 131.4 0.0 1.9e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|145591421|ref|YP_001153423.1| - 1e-23 83.7 0.0 1.2e-23 83.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|145591421|ref|YP_001153423.1| - 0.027 14.6 0.0 0.33 11.1 0.0 2.0 1 1 1 2 2 2 0 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|145591421|ref|YP_001153423.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 SCO1/SenC Thioredox_DsbH PF03190.15 gi|145591422|ref|YP_001153424.1| - 9.3e-58 194.8 0.0 1.7e-57 194.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|145591422|ref|YP_001153424.1| - 1.6e-15 57.1 0.2 3.2e-15 56.1 0.2 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|145591422|ref|YP_001153424.1| - 8e-05 23.1 0.0 0.00015 22.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|145591422|ref|YP_001153424.1| - 0.0058 16.6 0.6 0.011 15.7 0.6 1.4 1 0 0 1 1 1 1 Thioredoxin C5-epim_C PF06662.13 gi|145591422|ref|YP_001153424.1| - 0.036 13.6 0.8 0.079 12.4 0.1 1.9 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Pyr_redox_2 PF07992.14 gi|145591423|ref|YP_001153425.1| - 8.4e-53 179.5 5.2 1.1e-52 179.1 5.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|145591423|ref|YP_001153425.1| - 1.7e-19 70.1 0.0 5e-19 68.6 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|145591423|ref|YP_001153425.1| - 7.6e-16 58.2 2.4 1.1e-14 54.4 2.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145591423|ref|YP_001153425.1| - 3.7e-14 53.0 9.4 9.6e-12 45.3 3.5 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|145591423|ref|YP_001153425.1| - 4.6e-08 32.8 1.2 4.6e-08 32.8 1.2 2.9 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|145591423|ref|YP_001153425.1| - 4.6e-08 32.5 23.4 9.7e-06 24.9 1.8 4.7 3 1 2 5 5 5 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|145591423|ref|YP_001153425.1| - 2.6e-05 23.1 6.5 0.0011 17.8 1.4 2.8 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|145591423|ref|YP_001153425.1| - 2.9e-05 24.1 0.6 2.9e-05 24.1 0.6 2.5 3 1 1 4 4 3 1 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|145591423|ref|YP_001153425.1| - 8.3e-05 21.9 0.0 0.00016 21.0 0.0 1.5 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|145591423|ref|YP_001153425.1| - 0.00015 21.0 3.7 0.00015 21.0 3.7 3.9 3 1 0 4 4 4 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|145591423|ref|YP_001153425.1| - 0.0013 18.1 8.6 0.011 15.1 1.2 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|145591423|ref|YP_001153425.1| - 0.0021 18.5 0.6 1.5 9.3 0.6 2.6 2 1 0 2 2 2 1 Putative NAD(P)-binding Thi4 PF01946.17 gi|145591423|ref|YP_001153425.1| - 0.0023 17.2 3.6 0.0068 15.7 0.7 2.4 2 0 0 2 2 2 1 Thi4 family CoA_binding_2 PF13380.6 gi|145591423|ref|YP_001153425.1| - 0.0069 16.9 0.4 0.12 12.8 0.1 2.9 3 0 0 3 3 3 1 CoA binding domain ETF PF01012.21 gi|145591423|ref|YP_001153425.1| - 0.015 15.2 0.2 0.047 13.6 0.2 1.9 1 0 0 1 1 1 0 Electron transfer flavoprotein domain DAO PF01266.24 gi|145591423|ref|YP_001153425.1| - 0.016 14.8 1.0 0.016 14.8 1.0 3.2 2 2 2 4 4 4 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|145591423|ref|YP_001153425.1| - 0.11 11.5 15.2 0.2 10.7 0.4 3.4 3 1 1 4 4 4 0 Lycopene cyclase protein XdhC_C PF13478.6 gi|145591423|ref|YP_001153425.1| - 0.18 12.3 1.0 2.9 8.4 0.1 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain FAD_binding_3 PF01494.19 gi|145591423|ref|YP_001153425.1| - 0.19 11.0 6.4 2.2 7.4 0.3 2.2 2 0 0 2 2 2 0 FAD binding domain NAD_binding_8 PF13450.6 gi|145591423|ref|YP_001153425.1| - 0.24 11.7 6.7 0.15 12.3 0.5 2.8 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain F420_oxidored PF03807.17 gi|145591423|ref|YP_001153425.1| - 0.48 11.0 4.1 4.8 7.8 0.2 2.6 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent YHS PF04945.13 gi|145591424|ref|YP_001153426.1| - 1.6e-21 76.1 2.5 2e-21 75.8 2.5 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|145591424|ref|YP_001153426.1| - 0.00023 21.4 1.5 0.00029 21.1 1.5 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|145591424|ref|YP_001153426.1| - 0.00054 19.8 0.1 0.00081 19.3 0.1 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|145591424|ref|YP_001153426.1| - 0.014 14.9 0.1 0.016 14.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function DUF2116 PF09889.9 gi|145591424|ref|YP_001153426.1| - 0.12 12.4 0.5 0.41 10.7 0.3 1.8 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DrsE PF02635.15 gi|145591425|ref|YP_001153427.1| - 6.6e-05 23.3 0.0 8e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family Acylphosphatase PF00708.18 gi|145591426|ref|YP_001153428.1| - 1.7e-21 76.4 0.0 3.9e-21 75.2 0.0 1.7 1 0 0 1 1 1 1 Acylphosphatase AIRS_C PF02769.22 gi|145591426|ref|YP_001153428.1| - 0.051 13.7 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain TusA PF01206.17 gi|145591427|ref|YP_001153429.1| - 1e-20 73.3 0.0 1.2e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|145591427|ref|YP_001153429.1| - 0.00034 20.4 0.1 0.001 18.9 0.1 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Ski_Sno PF02437.17 gi|145591427|ref|YP_001153429.1| - 0.14 11.9 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 SKI/SNO/DAC family TusA PF01206.17 gi|145591428|ref|YP_001153430.1| - 1.4e-22 79.3 0.1 1.5e-22 79.2 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Glyoxalase_3 PF13468.6 gi|145591428|ref|YP_001153430.1| - 0.006 16.7 0.0 0.0066 16.6 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain NIR_SIR PF01077.22 gi|145591430|ref|YP_001153432.1| - 3.2e-36 124.2 0.1 5.8e-36 123.4 0.0 1.4 2 0 0 2 2 2 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|145591430|ref|YP_001153432.1| - 4.1e-08 33.0 0.0 7.4e-08 32.1 0.0 1.5 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4 PF00037.27 gi|145591430|ref|YP_001153432.1| - 0.00011 21.9 8.2 0.028 14.3 4.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145591430|ref|YP_001153432.1| - 0.0033 18.0 3.7 0.0039 17.7 1.8 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591430|ref|YP_001153432.1| - 0.0082 16.3 1.0 0.027 14.6 1.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|145591430|ref|YP_001153432.1| - 0.009 16.7 1.0 3.3 8.5 0.1 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145591430|ref|YP_001153432.1| - 0.015 15.9 2.8 1.4 9.6 0.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|145591430|ref|YP_001153432.1| - 0.022 15.2 0.2 0.19 12.2 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591430|ref|YP_001153432.1| - 0.028 14.5 3.2 0.028 14.5 3.2 2.7 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|145591430|ref|YP_001153432.1| - 0.034 15.1 2.9 3.2 8.8 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|145591430|ref|YP_001153432.1| - 0.12 12.5 9.0 0.53 10.5 4.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591430|ref|YP_001153432.1| - 2.5 8.3 7.5 0.63 10.2 3.5 2.1 2 1 0 2 2 2 0 4Fe-4S dicluster domain NIR_SIR PF01077.22 gi|145591431|ref|YP_001153433.1| - 2.2e-20 72.8 0.2 3.1e-20 72.3 0.2 1.2 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|145591431|ref|YP_001153433.1| - 0.00027 20.7 0.0 0.0018 18.1 0.0 2.1 2 0 0 2 2 2 1 Nitrite/Sulfite reductase ferredoxin-like half domain HEM4 PF02602.15 gi|145591432|ref|YP_001153434.1| - 2.5e-23 82.6 0.8 3e-23 82.4 0.8 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD ANF_receptor PF01094.28 gi|145591432|ref|YP_001153434.1| - 0.019 14.0 0.0 0.05 12.7 0.0 1.5 1 1 0 1 1 1 0 Receptor family ligand binding region HEM4 PF02602.15 gi|145591433|ref|YP_001153435.1| - 7.4e-12 45.1 2.8 9.3e-12 44.8 2.8 1.2 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TusA PF01206.17 gi|145591434|ref|YP_001153436.1| - 6.5e-12 45.1 0.0 7.6e-12 44.9 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1641 PF07849.11 gi|145591435|ref|YP_001153437.1| - 1.1e-16 60.4 0.8 1.1e-16 60.4 0.8 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) DUF3562 PF12085.8 gi|145591435|ref|YP_001153437.1| - 0.0047 16.5 0.0 0.56 9.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF3562) HisKA PF00512.25 gi|145591435|ref|YP_001153437.1| - 0.1 12.6 0.4 0.3 11.1 0.1 1.9 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Pyr_redox_2 PF07992.14 gi|145591436|ref|YP_001153438.1| - 4.3e-19 68.9 0.2 8.9e-13 48.1 0.0 2.0 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|145591436|ref|YP_001153438.1| - 1.3e-05 24.9 0.9 0.053 13.1 0.2 3.0 3 0 0 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|145591436|ref|YP_001153438.1| - 0.00042 19.3 0.0 0.0042 16.0 0.0 2.3 3 0 0 3 3 3 1 Tryptophan halogenase Pyr_redox PF00070.27 gi|145591436|ref|YP_001153438.1| - 0.00049 20.6 1.3 0.59 10.7 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|145591436|ref|YP_001153438.1| - 0.00052 20.0 0.0 0.021 14.8 0.0 2.5 2 0 0 2 2 2 1 FAD-NAD(P)-binding Fer4_8 PF13183.6 gi|145591437|ref|YP_001153439.1| - 6.2e-11 42.6 4.1 8.4e-11 42.2 1.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.16 gi|145591437|ref|YP_001153439.1| - 2.1e-10 40.7 1.2 2.2e-09 37.4 0.1 2.9 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_17 PF13534.6 gi|145591437|ref|YP_001153439.1| - 1.6e-09 38.2 1.3 1.6e-09 38.2 1.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591437|ref|YP_001153439.1| - 3.4e-09 37.2 2.3 1.6e-08 35.0 2.3 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591437|ref|YP_001153439.1| - 1.6e-05 25.0 7.7 0.017 15.2 0.4 2.7 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591437|ref|YP_001153439.1| - 2.6e-05 24.0 11.5 0.0062 16.6 3.8 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591437|ref|YP_001153439.1| - 6.7e-05 22.9 11.3 0.0006 19.9 10.0 2.6 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145591437|ref|YP_001153439.1| - 0.00018 21.7 11.1 0.027 15.0 2.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|145591437|ref|YP_001153439.1| - 0.00026 20.7 11.9 0.011 15.5 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145591437|ref|YP_001153439.1| - 0.0005 20.2 2.9 0.5 10.6 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591437|ref|YP_001153439.1| - 0.00063 20.6 12.1 0.0076 17.2 8.2 3.1 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|145591437|ref|YP_001153439.1| - 0.013 16.3 5.0 0.65 10.9 0.1 3.0 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145591437|ref|YP_001153439.1| - 0.026 14.7 10.3 0.22 11.7 1.1 2.6 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591437|ref|YP_001153439.1| - 0.03 14.4 14.2 0.072 13.2 4.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145591437|ref|YP_001153439.1| - 0.46 11.6 16.4 2.5 9.2 2.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145591437|ref|YP_001153439.1| - 7.3 7.2 10.3 9.4 6.9 0.6 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I GATase_3 PF07685.14 gi|145591438|ref|YP_001153440.1| - 1.4e-33 116.1 0.0 2e-33 115.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|145591438|ref|YP_001153440.1| - 1.5e-16 60.6 0.0 2.7e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|145591438|ref|YP_001153440.1| - 1.8e-14 54.0 2.1 2.5e-09 37.3 0.4 2.5 1 1 0 2 2 2 2 AAA domain IncF PF17626.2 gi|145591438|ref|YP_001153440.1| - 0.028 14.7 0.3 0.059 13.7 0.3 1.4 1 0 0 1 1 1 0 Inclusion membrane protein F DJ-1_PfpI PF01965.24 gi|145591438|ref|YP_001153440.1| - 0.043 13.6 0.0 0.077 12.8 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family SNO PF01174.19 gi|145591438|ref|YP_001153440.1| - 0.067 13.0 0.0 0.14 12.0 0.0 1.5 1 0 0 1 1 1 0 SNO glutamine amidotransferase family TP_methylase PF00590.20 gi|145591439|ref|YP_001153441.1| - 1.3e-41 142.9 2.4 1.6e-41 142.6 2.4 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases NIR_SIR PF01077.22 gi|145591441|ref|YP_001153443.1| - 6.3e-40 136.3 0.0 1.1e-39 135.5 0.0 1.4 1 0 0 1 1 1 1 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|145591441|ref|YP_001153443.1| - 3.8e-10 39.5 0.0 6.5e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 Nitrite/Sulfite reductase ferredoxin-like half domain Fer4_7 PF12838.7 gi|145591441|ref|YP_001153443.1| - 0.0012 19.4 1.2 0.0036 17.8 1.2 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591441|ref|YP_001153443.1| - 0.0041 17.2 1.7 0.0041 17.2 1.7 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145591441|ref|YP_001153443.1| - 0.0053 17.2 0.1 0.066 13.7 0.1 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591441|ref|YP_001153443.1| - 0.0099 15.7 6.4 2 8.4 3.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591441|ref|YP_001153443.1| - 0.042 14.0 0.8 0.042 14.0 0.8 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain DAOA PF15199.6 gi|145591441|ref|YP_001153443.1| - 0.1 13.0 0.1 0.65 10.5 0.1 2.1 2 0 0 2 2 2 0 D-amino acid oxidase activator Fer4_19 PF06902.11 gi|145591441|ref|YP_001153443.1| - 0.13 12.4 1.6 3.6 7.7 0.0 3.2 2 1 1 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|145591441|ref|YP_001153443.1| - 0.59 10.3 6.5 3.6 7.8 3.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591441|ref|YP_001153443.1| - 1.2 9.3 5.7 3.1 8.0 4.2 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591441|ref|YP_001153443.1| - 4 8.1 7.9 0.12 13.0 0.9 2.1 3 0 0 3 3 2 0 4Fe-4S single cluster domain of Ferredoxin I DrsE PF02635.15 gi|145591443|ref|YP_001153445.1| - 3.4e-20 72.5 0.0 3.7e-20 72.4 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|145591443|ref|YP_001153445.1| - 5.3e-11 42.6 1.6 4.4e-08 33.2 0.2 2.1 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family Pox_A6 PF04924.12 gi|145591443|ref|YP_001153445.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Poxvirus A6 protein DsrC PF04358.13 gi|145591444|ref|YP_001153446.1| - 5.3e-35 120.2 0.0 6.1e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 DsrC like protein MerR-DNA-bind PF09278.11 gi|145591444|ref|YP_001153446.1| - 0.055 14.0 0.0 0.66 10.6 0.0 2.1 2 0 0 2 2 2 0 MerR, DNA binding Lant_dehydr_N PF04738.13 gi|145591444|ref|YP_001153446.1| - 0.19 9.8 0.0 0.2 9.7 0.0 1.0 1 0 0 1 1 1 0 Lantibiotic dehydratase, N terminus Nitrate_red_gam PF02665.14 gi|145591445|ref|YP_001153447.1| - 2.4e-38 131.9 13.3 4.5e-35 121.2 7.0 2.0 2 0 0 2 2 2 2 Nitrate reductase gamma subunit SMC_ScpB PF04079.16 gi|145591446|ref|YP_001153448.1| - 0.0001 21.9 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB TrmB PF01978.19 gi|145591446|ref|YP_001153448.1| - 0.0036 17.2 0.3 0.038 13.9 0.1 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB zf-CCCH_6 PF18585.1 gi|145591446|ref|YP_001153448.1| - 0.031 14.2 0.2 0.1 12.5 0.3 1.8 2 0 0 2 2 2 0 Chromatin remodeling factor Mit1 C-terminal Zn finger 2 Metallophos_2 PF12850.7 gi|145591448|ref|YP_001153450.1| - 1.2e-33 116.7 0.2 1.3e-33 116.5 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|145591448|ref|YP_001153450.1| - 1.9e-07 31.8 0.4 0.00011 22.8 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|145591448|ref|YP_001153450.1| - 0.0035 16.7 0.1 0.13 11.6 0.0 2.2 2 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily LpxI_N PF17930.1 gi|145591448|ref|YP_001153450.1| - 0.12 12.2 0.1 4.5 7.2 0.0 2.2 1 1 1 2 2 2 0 LpxI N-terminal domain Waikav_capsid_1 PF12264.8 gi|145591448|ref|YP_001153450.1| - 0.16 11.5 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Waikavirus capsid protein 1 APS-reductase_C PF12139.8 gi|145591451|ref|YP_001153453.1| - 3.8e-23 81.5 0.0 5.5e-23 81.0 0.0 1.2 1 0 0 1 1 1 1 Adenosine-5'-phosphosulfate reductase beta subunit Fer4 PF00037.27 gi|145591451|ref|YP_001153453.1| - 6.1e-09 35.3 12.9 6.5e-06 25.7 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145591451|ref|YP_001153453.1| - 6.5e-09 36.3 12.1 1.1e-08 35.5 12.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591451|ref|YP_001153453.1| - 2.1e-08 35.0 5.5 0.0012 19.7 1.2 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|145591451|ref|YP_001153453.1| - 2.5e-08 33.9 12.2 3.8e-08 33.4 12.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591451|ref|YP_001153453.1| - 1e-07 31.7 15.0 3.1e-05 23.8 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|145591451|ref|YP_001153453.1| - 1.3e-07 31.6 8.4 0.00039 20.7 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591451|ref|YP_001153453.1| - 1.5e-07 31.4 12.0 2.2e-05 24.5 14.0 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591451|ref|YP_001153453.1| - 8.6e-07 28.7 12.0 0.00057 19.8 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591451|ref|YP_001153453.1| - 4.3e-05 23.6 7.9 0.01 16.0 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591451|ref|YP_001153453.1| - 0.0013 19.5 16.0 0.085 13.8 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|145591451|ref|YP_001153453.1| - 0.02 15.7 6.6 0.16 12.8 0.9 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591451|ref|YP_001153453.1| - 0.024 15.2 15.6 0.88 10.2 2.8 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145591451|ref|YP_001153453.1| - 0.026 15.0 14.5 0.85 10.1 14.8 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145591451|ref|YP_001153453.1| - 0.12 12.6 10.1 0.22 11.7 1.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591451|ref|YP_001153453.1| - 0.23 12.0 13.1 1.8 9.2 2.4 2.3 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|145591451|ref|YP_001153453.1| - 1.9 9.3 8.0 2.1 9.1 1.2 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_2 PF00890.24 gi|145591452|ref|YP_001153454.1| - 5.1e-11 42.3 0.1 2.9e-10 39.8 0.0 2.1 2 1 0 2 2 2 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|145591452|ref|YP_001153454.1| - 3e-07 30.5 0.0 5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|145591452|ref|YP_001153454.1| - 5e-06 26.3 0.0 2.7e-05 23.9 0.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|145591452|ref|YP_001153454.1| - 0.0043 16.2 5.2 0.24 10.4 1.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|145591452|ref|YP_001153454.1| - 0.0063 15.8 1.1 0.01 15.1 0.4 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|145591452|ref|YP_001153454.1| - 0.1 11.3 0.2 0.38 9.4 0.1 1.8 2 0 0 2 2 2 0 HI0933-like protein Trp_halogenase PF04820.14 gi|145591452|ref|YP_001153454.1| - 0.17 10.7 0.2 0.27 10.1 0.2 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Cons_hypoth698 PF03601.14 gi|145591453|ref|YP_001153455.1| - 4.2e-22 78.4 17.5 5.8e-22 77.9 17.5 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 698 OapA_N PF08525.11 gi|145591453|ref|YP_001153455.1| - 0.26 11.3 0.0 0.26 11.3 0.0 4.6 7 0 0 7 7 7 0 Opacity-associated protein A N-terminal motif Ank_5 PF13857.6 gi|145591455|ref|YP_001153457.1| - 8.8e-13 48.2 0.2 9.8e-12 44.9 0.0 2.6 2 1 1 3 3 3 2 Ankyrin repeats (many copies) Ank_4 PF13637.6 gi|145591455|ref|YP_001153457.1| - 2.1e-12 47.3 0.1 8.6e-06 26.2 0.0 3.4 2 2 2 4 4 4 2 Ankyrin repeats (many copies) Ank PF00023.30 gi|145591455|ref|YP_001153457.1| - 2.9e-09 37.0 0.7 1e-05 25.7 0.0 3.8 3 1 0 3 3 3 2 Ankyrin repeat Ank_3 PF13606.6 gi|145591455|ref|YP_001153457.1| - 4.6e-08 32.7 0.2 4.8e-05 23.4 0.0 3.9 4 0 0 4 4 4 1 Ankyrin repeat Ank_2 PF12796.7 gi|145591455|ref|YP_001153457.1| - 7.6e-08 32.8 0.1 4.9e-07 30.2 0.0 2.2 2 0 0 2 2 2 1 Ankyrin repeats (3 copies) Keratin PF02422.16 gi|145591455|ref|YP_001153457.1| - 0.097 12.4 0.5 0.16 11.7 0.5 1.3 1 0 0 1 1 1 0 Keratin F-112 PF09645.10 gi|145591455|ref|YP_001153457.1| - 0.097 12.8 0.0 0.19 11.9 0.0 1.6 1 1 0 1 1 1 0 F-112 protein ATP-sulfurylase PF01747.17 gi|145591456|ref|YP_001153458.1| - 1.2e-68 230.8 0.0 1.7e-68 230.3 0.0 1.2 1 0 0 1 1 1 1 ATP-sulfurylase PUA_2 PF14306.6 gi|145591456|ref|YP_001153458.1| - 7.7e-39 132.9 0.0 1.7e-38 131.8 0.0 1.5 2 0 0 2 2 2 1 PUA-like domain DUF309 PF03745.14 gi|145591456|ref|YP_001153458.1| - 0.12 12.0 0.8 0.23 11.2 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF309) Tetrabrachion PF11401.8 gi|145591457|ref|YP_001153459.1| - 0.17 11.9 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Tetrabrachion DrsE_2 PF13686.6 gi|145591458|ref|YP_001153460.1| - 1.6e-28 99.5 0.4 3e-14 53.2 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|145591458|ref|YP_001153460.1| - 2.3e-11 44.1 0.0 3.2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 DsrE/DsrF-like family NAD_binding_10 PF13460.6 gi|145591460|ref|YP_001153462.1| - 0.00015 21.7 0.6 0.11 12.4 0.1 2.4 2 0 0 2 2 2 2 NAD(P)H-binding Uricase PF01014.18 gi|145591460|ref|YP_001153462.1| - 0.032 14.5 1.4 0.092 13.0 1.4 1.7 1 0 0 1 1 1 0 Uricase PK_C PF02887.16 gi|145591460|ref|YP_001153462.1| - 0.036 14.3 0.6 0.71 10.1 0.1 2.7 2 1 1 3 3 3 0 Pyruvate kinase, alpha/beta domain Pterin_4a PF01329.19 gi|145591461|ref|YP_001153463.1| - 1.1e-18 67.2 0.0 1.2e-18 67.1 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase TPP_enzyme_C PF02775.21 gi|145591463|ref|YP_001153465.1| - 7.7e-36 123.2 0.5 1.2e-35 122.6 0.5 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|145591463|ref|YP_001153465.1| - 1e-26 92.8 0.7 2e-26 91.9 0.7 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.19 gi|145591464|ref|YP_001153466.1| - 1.5e-59 201.5 0.5 2.2e-59 201.0 0.5 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|145591464|ref|YP_001153466.1| - 1.4e-28 100.2 2.6 4.8e-15 56.1 0.1 2.9 1 1 1 2 2 2 2 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|145591464|ref|YP_001153466.1| - 1.8e-06 27.7 3.7 1.8e-05 24.4 2.5 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|145591464|ref|YP_001153466.1| - 0.066 13.5 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Sugar_tr PF00083.24 gi|145591465|ref|YP_001153467.1| - 1.2e-34 120.0 24.8 1.4e-23 83.5 6.2 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|145591465|ref|YP_001153467.1| - 1.3e-25 90.1 52.8 5.6e-17 61.7 22.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|145591465|ref|YP_001153467.1| - 0.0086 14.7 33.1 0.0045 15.6 13.1 2.6 1 1 1 2 2 2 2 MFS/sugar transport protein DUF1634 PF07843.11 gi|145591466|ref|YP_001153468.1| - 6.5e-22 77.5 6.7 7.5e-22 77.3 6.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) DUF4781 PF16013.5 gi|145591466|ref|YP_001153468.1| - 0.085 11.7 0.8 0.1 11.4 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) SPC25 PF06703.11 gi|145591466|ref|YP_001153468.1| - 0.33 10.7 1.5 0.52 10.1 1.5 1.3 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) TauE PF01925.19 gi|145591467|ref|YP_001153469.1| - 1.2e-42 146.1 32.1 1.5e-42 145.9 32.1 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE UPF0020 PF01170.18 gi|145591468|ref|YP_001153470.1| - 7.5e-21 74.7 0.0 3.7e-20 72.4 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.17 gi|145591468|ref|YP_001153470.1| - 4.4e-10 39.8 0.2 6.3e-10 39.3 0.2 1.3 1 0 0 1 1 1 1 THUMP domain MTS PF05175.14 gi|145591468|ref|YP_001153470.1| - 6.5e-10 38.8 0.0 1e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|145591468|ref|YP_001153470.1| - 2.7e-05 24.0 0.0 4.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591468|ref|YP_001153470.1| - 0.00023 21.8 0.0 0.00057 20.5 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591468|ref|YP_001153470.1| - 0.0031 17.4 0.0 0.025 14.4 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|145591468|ref|YP_001153470.1| - 0.0048 16.2 0.0 0.025 13.9 0.0 2.1 2 1 0 2 2 2 1 O-methyltransferase domain Methyltransf_4 PF02390.17 gi|145591468|ref|YP_001153470.1| - 0.006 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_12 PF08242.12 gi|145591468|ref|YP_001153470.1| - 0.014 16.1 0.0 0.026 15.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|145591468|ref|YP_001153470.1| - 0.1 11.9 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Prok_Ub PF14454.6 gi|145591468|ref|YP_001153470.1| - 0.12 12.0 0.0 1.6 8.5 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic Ubiquitin AhpC-TSA_2 PF13911.6 gi|145591468|ref|YP_001153470.1| - 0.15 12.2 0.0 8.2 6.6 0.0 2.4 2 1 0 2 2 2 0 AhpC/TSA antioxidant enzyme Mrr_cat PF04471.12 gi|145591469|ref|YP_001153471.1| - 4.6e-20 71.8 0.0 1.5e-19 70.1 0.0 1.9 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|145591469|ref|YP_001153471.1| - 7.9e-10 38.7 0.0 1.5e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease Isochorismatase PF00857.20 gi|145591471|ref|YP_001153473.1| - 2.5e-45 154.8 0.0 2.8e-45 154.6 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Ribonuc_L-PSP PF01042.21 gi|145591472|ref|YP_001153474.1| - 1.5e-45 154.1 0.4 1.6e-45 154.0 0.4 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YtxH PF12732.7 gi|145591472|ref|YP_001153474.1| - 0.007 16.9 0.0 0.0097 16.4 0.0 1.2 1 0 0 1 1 1 1 YtxH-like protein DUF3852 PF12963.7 gi|145591472|ref|YP_001153474.1| - 0.1 13.0 0.1 0.13 12.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3852) CcdA PF07362.12 gi|145591475|ref|YP_001153477.1| - 0.00026 21.3 1.9 0.0058 17.0 0.3 2.0 1 1 1 2 2 2 2 Post-segregation antitoxin CcdA FbpA PF05833.11 gi|145591475|ref|YP_001153477.1| - 0.003 16.4 0.1 0.0033 16.3 0.1 1.0 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) Phage_int_SAM_5 PF13102.6 gi|145591475|ref|YP_001153477.1| - 0.011 16.1 0.1 0.013 15.8 0.1 1.1 1 0 0 1 1 1 0 Phage integrase SAM-like domain RHH_1 PF01402.21 gi|145591475|ref|YP_001153477.1| - 1.8 8.6 0.0 1.8 8.6 0.0 3.3 4 0 0 4 4 4 0 Ribbon-helix-helix protein, copG family PIN PF01850.21 gi|145591476|ref|YP_001153478.1| - 0.00063 20.2 0.1 0.00072 20.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|145591476|ref|YP_001153478.1| - 0.0013 19.5 0.4 0.0015 19.3 0.4 1.1 1 0 0 1 1 1 1 PIN domain PaRep2b PF07775.11 gi|145591479|ref|YP_001153481.1| - 2.6e-07 29.5 0.1 2.7e-07 29.5 0.1 1.0 1 0 0 1 1 1 1 PaRep2b protein TUDOR_5 PF18359.1 gi|145591479|ref|YP_001153481.1| - 0.19 11.5 0.0 0.94 9.2 0.0 2.0 1 1 0 1 1 1 0 Histone methyltransferase Tudor domain 1 PaREP1 PF05942.11 gi|145591481|ref|YP_001153483.1| - 1.1e-21 76.9 0.2 1.6e-21 76.4 0.2 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family A1_Propeptide PF07966.12 gi|145591481|ref|YP_001153483.1| - 2.3 8.2 6.3 2.6 8.0 0.3 3.0 3 0 0 3 3 3 0 A1 Propeptide NTP_transf_2 PF01909.23 gi|145591482|ref|YP_001153484.1| - 3.3e-09 36.9 0.0 4.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591482|ref|YP_001153484.1| - 0.00025 21.1 0.0 0.0003 20.8 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase Gp_dh_C PF02800.20 gi|145591482|ref|YP_001153484.1| - 0.085 12.4 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DNA_pol_B_palm PF14792.6 gi|145591482|ref|YP_001153484.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.14 gi|145591483|ref|YP_001153485.1| - 5.1e-23 81.4 2.5 7.1e-23 81.0 2.5 1.2 1 0 0 1 1 1 1 HEPN domain DUF4129 PF13559.6 gi|145591483|ref|YP_001153485.1| - 0.15 12.4 3.4 0.35 11.2 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4129) DUF4625 PF15418.6 gi|145591487|ref|YP_001153489.1| - 0.1 12.8 0.0 21 5.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) DUF4651 PF15513.6 gi|145591487|ref|YP_001153489.1| - 0.19 11.6 1.4 3.7 7.4 0.3 3.1 4 0 0 4 4 4 0 Domain of unknown function (DUF4651) CitMHS PF03600.16 gi|145591488|ref|YP_001153490.1| - 7.7e-23 81.1 20.1 1.1e-22 80.6 20.1 1.2 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|145591488|ref|YP_001153490.1| - 2.7e-07 30.3 0.0 6.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain BatA PF07584.11 gi|145591488|ref|YP_001153490.1| - 0.094 13.1 0.5 0.094 13.1 0.5 2.4 2 0 0 2 2 2 0 Aerotolerance regulator N-terminal TrmO PF01980.16 gi|145591489|ref|YP_001153491.1| - 2.5e-26 92.2 0.0 3e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O U79_P34 PF03064.16 gi|145591490|ref|YP_001153492.1| - 0.064 12.6 5.4 0.11 11.8 5.4 1.4 1 0 0 1 1 1 0 HSV U79 / HCMV P34 GerPC PF10737.9 gi|145591490|ref|YP_001153492.1| - 0.07 13.2 0.3 0.13 12.3 0.1 1.6 1 1 0 1 1 1 0 Spore germination protein GerPC Exonuc_VII_L PF02601.15 gi|145591490|ref|YP_001153492.1| - 0.071 12.7 1.6 0.088 12.4 1.6 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2294 PF10057.9 gi|145591490|ref|YP_001153492.1| - 0.092 12.9 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) LUC7 PF03194.15 gi|145591490|ref|YP_001153492.1| - 0.17 11.5 3.8 0.92 9.1 3.7 2.1 1 1 0 1 1 1 0 LUC7 N_terminus S6OS1 PF15676.5 gi|145591490|ref|YP_001153492.1| - 0.47 8.9 5.5 0.64 8.4 5.5 1.1 1 0 0 1 1 1 0 Six6 opposite strand transcript 1 family DUF4200 PF13863.6 gi|145591490|ref|YP_001153492.1| - 0.89 10.0 14.4 1.1 9.6 11.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DDRGK PF09756.9 gi|145591490|ref|YP_001153492.1| - 1.2 8.6 12.5 1.9 8.0 12.5 1.3 1 0 0 1 1 1 0 DDRGK domain APG17 PF04108.12 gi|145591490|ref|YP_001153492.1| - 1.8 7.6 7.9 2.9 6.9 7.5 1.6 1 1 0 1 1 1 0 Autophagy protein Apg17 Muted PF14942.6 gi|145591490|ref|YP_001153492.1| - 1.8 8.9 10.6 1.2 9.5 7.1 2.2 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Activator-TraM PF11657.8 gi|145591490|ref|YP_001153492.1| - 2.6 7.9 10.7 0.45 10.4 1.9 2.2 1 1 1 2 2 2 0 Transcriptional activator TraM CN_hydrolase PF00795.22 gi|145591492|ref|YP_001153494.1| - 2e-18 66.7 0.0 7.9e-18 64.7 0.0 1.8 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase TMEM135_C_rich PF15982.5 gi|145591493|ref|YP_001153495.1| - 0.0074 16.9 0.1 0.018 15.7 0.1 1.6 1 0 0 1 1 1 1 N-terminal cysteine-rich region of Transmembrane protein 135 RBFA PF02033.18 gi|145591493|ref|YP_001153495.1| - 0.0099 16.3 0.0 0.02 15.3 0.0 1.5 1 0 0 1 1 1 1 Ribosome-binding factor A HupH_C PF04809.13 gi|145591493|ref|YP_001153495.1| - 0.11 12.2 0.0 0.27 10.9 0.0 1.6 1 0 0 1 1 1 0 HupH hydrogenase expression protein, C-terminal conserved region Sua5_yciO_yrdC PF01300.18 gi|145591494|ref|YP_001153496.1| - 2.7e-45 154.0 0.0 4.3e-45 153.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination HypF_C PF17788.1 gi|145591494|ref|YP_001153496.1| - 1.1e-25 90.2 0.0 2.2e-25 89.3 0.0 1.5 1 0 0 1 1 1 1 HypF Kae1-like domain zf-HYPF PF07503.12 gi|145591494|ref|YP_001153496.1| - 7.3e-21 73.7 6.0 2.6e-10 39.9 0.1 2.5 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.18 gi|145591494|ref|YP_001153496.1| - 5.3e-18 65.2 0.1 9.9e-18 64.3 0.1 1.5 1 0 0 1 1 1 1 Acylphosphatase Peptidase_M22 PF00814.25 gi|145591494|ref|YP_001153496.1| - 0.00079 19.2 0.1 1 9.0 0.0 2.3 2 0 0 2 2 2 2 Glycoprotease family DUF5448 PF17526.2 gi|145591494|ref|YP_001153496.1| - 0.13 12.5 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5448) Zn-ribbon_8 PF09723.10 gi|145591494|ref|YP_001153496.1| - 0.14 12.3 2.0 0.59 10.3 0.4 2.4 2 0 0 2 2 2 0 Zinc ribbon domain zf-C4_ClpX PF06689.13 gi|145591494|ref|YP_001153496.1| - 0.21 11.5 0.8 25 4.8 0.2 2.6 2 0 0 2 2 2 0 ClpX C4-type zinc finger PhnA_Zn_Ribbon PF08274.12 gi|145591494|ref|YP_001153496.1| - 4.2 7.4 8.3 1.7 8.6 0.8 2.8 3 0 0 3 3 3 0 PhnA Zinc-Ribbon DUF364 PF04016.12 gi|145591495|ref|YP_001153497.1| - 1.7e-24 86.1 0.0 2.5e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|145591495|ref|YP_001153497.1| - 9.1e-08 32.2 0.0 1.6e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation FmdE PF02663.14 gi|145591496|ref|YP_001153498.1| - 2.2e-10 40.7 0.0 3.9e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Peripla_BP_2 PF01497.18 gi|145591497|ref|YP_001153499.1| - 4.2e-30 105.1 0.0 5.8e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF2201 PF09967.9 gi|145591497|ref|YP_001153499.1| - 0.0097 16.0 0.1 0.036 14.2 0.1 1.9 2 0 0 2 2 2 1 VWA-like domain (DUF2201) FecCD PF01032.18 gi|145591498|ref|YP_001153500.1| - 4.7e-75 252.5 39.6 5.7e-75 252.2 39.6 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|145591498|ref|YP_001153500.1| - 0.23 10.9 27.4 0.85 9.1 26.1 2.5 1 1 1 2 2 2 0 ABC 3 transport family ABC_tran PF00005.27 gi|145591499|ref|YP_001153501.1| - 4.1e-28 98.6 0.0 5.5e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591499|ref|YP_001153501.1| - 6.8e-14 52.4 0.3 4.9e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591499|ref|YP_001153501.1| - 1.9e-09 37.3 0.2 0.00075 19.0 0.0 2.1 1 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591499|ref|YP_001153501.1| - 1.8e-05 25.3 0.0 2.9e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145591499|ref|YP_001153501.1| - 0.0001 22.0 0.0 0.00018 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|145591499|ref|YP_001153501.1| - 0.00013 22.0 0.1 0.00028 20.9 0.0 1.5 2 0 0 2 2 1 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|145591499|ref|YP_001153501.1| - 0.0012 18.6 0.0 0.0034 17.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|145591499|ref|YP_001153501.1| - 0.0014 18.4 0.2 0.0015 18.3 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|145591499|ref|YP_001153501.1| - 0.0014 19.1 0.1 0.018 15.5 0.0 2.7 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145591499|ref|YP_001153501.1| - 0.0016 18.8 0.3 0.0029 18.0 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF3584 PF12128.8 gi|145591499|ref|YP_001153501.1| - 0.0032 15.1 0.1 0.0044 14.6 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_22 PF13401.6 gi|145591499|ref|YP_001153501.1| - 0.0059 16.9 1.4 0.054 13.8 1.4 2.1 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|145591499|ref|YP_001153501.1| - 0.0059 15.4 0.1 0.037 12.8 0.1 1.9 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_28 PF13521.6 gi|145591499|ref|YP_001153501.1| - 0.0073 16.6 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|145591499|ref|YP_001153501.1| - 0.0079 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 KaiC NACHT PF05729.12 gi|145591499|ref|YP_001153501.1| - 0.0097 15.8 0.1 0.017 15.0 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.6 gi|145591499|ref|YP_001153501.1| - 0.01 15.8 0.0 0.027 14.5 0.0 1.6 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|145591499|ref|YP_001153501.1| - 0.015 15.5 0.0 0.29 11.4 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|145591499|ref|YP_001153501.1| - 0.018 14.6 0.0 0.037 13.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145591499|ref|YP_001153501.1| - 0.03 13.6 0.0 0.049 12.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin NTPase_1 PF03266.15 gi|145591499|ref|YP_001153501.1| - 0.03 14.2 0.3 0.077 12.9 0.1 1.7 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|145591499|ref|YP_001153501.1| - 0.038 14.0 0.2 0.11 12.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|145591499|ref|YP_001153501.1| - 0.038 13.6 0.2 0.064 12.8 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RecA PF00154.21 gi|145591499|ref|YP_001153501.1| - 0.038 13.4 0.0 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_13 PF13166.6 gi|145591499|ref|YP_001153501.1| - 0.062 12.0 0.0 0.11 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|145591499|ref|YP_001153501.1| - 0.064 13.6 0.4 0.093 13.1 0.4 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|145591499|ref|YP_001153501.1| - 0.085 13.0 0.2 0.19 11.9 0.2 1.8 1 1 0 1 1 1 0 AAA domain TniB PF05621.11 gi|145591499|ref|YP_001153501.1| - 0.093 12.1 0.3 0.92 8.9 0.2 2.1 2 0 0 2 2 2 0 Bacterial TniB protein GvpD PF07088.11 gi|145591499|ref|YP_001153501.1| - 0.11 11.1 0.0 0.15 10.6 0.0 1.4 2 0 0 2 2 2 0 GvpD gas vesicle protein DLIC PF05783.11 gi|145591499|ref|YP_001153501.1| - 0.12 11.1 0.0 0.18 10.6 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) RNA12 PF10443.9 gi|145591499|ref|YP_001153501.1| - 0.15 10.8 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein CLP1_P PF16575.5 gi|145591499|ref|YP_001153501.1| - 0.16 11.8 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|145591499|ref|YP_001153501.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|145591499|ref|YP_001153501.1| - 0.16 11.6 0.1 0.26 10.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain HypD PF01924.16 gi|145591500|ref|YP_001153502.1| - 3.7e-119 397.9 0.0 4.6e-119 397.6 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family HupF_HypC PF01455.18 gi|145591501|ref|YP_001153503.1| - 7.6e-14 51.6 0.7 7.6e-14 51.6 0.7 1.6 2 0 0 2 2 2 1 HupF/HypC family BrnA_antitoxin PF14384.6 gi|145591502|ref|YP_001153504.1| - 0.19 12.2 0.0 0.2 12.1 0.0 1.0 1 0 0 1 1 1 0 BrnA antitoxin of type II toxin-antitoxin system PIN PF01850.21 gi|145591503|ref|YP_001153505.1| - 0.067 13.7 0.0 0.09 13.3 0.0 1.2 1 0 0 1 1 1 0 PIN domain gag-asp_proteas PF13975.6 gi|145591504|ref|YP_001153506.1| - 5e-09 36.6 0.1 6.1e-09 36.3 0.1 1.1 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|145591504|ref|YP_001153506.1| - 7.7e-08 32.9 0.2 1.3e-07 32.1 0.1 1.4 1 1 0 1 1 1 1 Aspartyl protease Asp_protease PF09668.10 gi|145591504|ref|YP_001153506.1| - 0.00013 21.7 0.1 0.00019 21.2 0.1 1.2 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.20 gi|145591504|ref|YP_001153506.1| - 0.05 13.9 0.0 0.12 12.7 0.0 1.6 1 1 0 1 1 1 0 Retroviral aspartyl protease CbiM PF01891.16 gi|145591505|ref|YP_001153507.1| - 4e-53 180.3 18.6 4e-53 180.3 18.6 1.6 2 0 0 2 2 2 1 Cobalt uptake substrate-specific transmembrane region PDGLE PF13190.6 gi|145591505|ref|YP_001153507.1| - 5e-05 23.1 0.0 5e-05 23.1 0.0 2.9 3 0 0 3 3 3 1 PDGLE domain ABC_tran PF00005.27 gi|145591507|ref|YP_001153509.1| - 1.6e-18 67.5 0.0 3.8e-18 66.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591507|ref|YP_001153509.1| - 1.3e-14 54.7 1.2 1e-06 28.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|145591507|ref|YP_001153509.1| - 1.1e-05 26.1 0.0 1.5e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145591507|ref|YP_001153509.1| - 4.9e-05 23.0 0.1 0.0001 21.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|145591507|ref|YP_001153509.1| - 7.1e-05 22.3 0.3 0.0011 18.5 0.1 2.1 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|145591507|ref|YP_001153509.1| - 0.00014 22.2 0.0 0.00084 19.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|145591507|ref|YP_001153509.1| - 0.00034 20.4 0.0 0.00038 20.3 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|145591507|ref|YP_001153509.1| - 0.002 17.6 0.0 0.012 15.1 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|145591507|ref|YP_001153509.1| - 0.002 18.6 0.0 0.0034 17.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|145591507|ref|YP_001153509.1| - 0.0038 17.0 0.1 0.0051 16.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|145591507|ref|YP_001153509.1| - 0.0064 16.4 0.1 0.032 14.2 0.0 1.9 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|145591507|ref|YP_001153509.1| - 0.018 15.3 0.0 0.058 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|145591507|ref|YP_001153509.1| - 0.023 13.8 0.6 0.035 13.2 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|145591507|ref|YP_001153509.1| - 0.033 14.1 0.0 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_25 PF13481.6 gi|145591507|ref|YP_001153509.1| - 0.077 12.6 0.3 0.54 9.8 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|145591507|ref|YP_001153509.1| - 0.13 10.9 0.0 0.18 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145591507|ref|YP_001153509.1| - 0.13 12.2 0.0 0.65 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|145591507|ref|YP_001153509.1| - 0.17 11.4 0.1 0.35 10.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF5636 PF18686.1 gi|145591509|ref|YP_001153511.1| - 0.0033 17.6 0.4 0.0035 17.6 0.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5636) Cor1 PF04803.12 gi|145591509|ref|YP_001153511.1| - 0.022 15.0 0.5 0.054 13.7 0.5 1.6 1 1 0 1 1 1 0 Cor1/Xlr/Xmr conserved region CdvA PF18822.1 gi|145591509|ref|YP_001153511.1| - 0.041 13.7 1.4 3.1 7.6 0.1 2.1 2 0 0 2 2 2 0 CdvA-like coiled-coil domain HAUS2 PF15003.6 gi|145591509|ref|YP_001153511.1| - 0.048 13.4 0.1 0.057 13.2 0.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 2 HycI PF01750.18 gi|145591510|ref|YP_001153512.1| - 4.6e-05 23.3 0.0 9.9e-05 22.2 0.0 1.5 1 1 1 2 2 2 1 Hydrogenase maturation protease NiFeSe_Hases PF00374.19 gi|145591511|ref|YP_001153513.1| - 7.5e-48 163.7 0.0 1.9e-26 93.1 0.1 3.1 2 1 1 3 3 3 3 Nickel-dependent hydrogenase Fer4_8 PF13183.6 gi|145591512|ref|YP_001153514.1| - 1.4e-09 38.3 1.5 4.3e-09 36.7 1.5 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591512|ref|YP_001153514.1| - 8.3e-09 35.9 2.2 2.1e-08 34.6 2.2 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591512|ref|YP_001153514.1| - 2e-08 34.7 3.9 6.2e-08 33.1 3.9 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591512|ref|YP_001153514.1| - 3.3e-05 24.0 8.0 0.00028 21.0 8.2 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145591512|ref|YP_001153514.1| - 0.00015 21.5 13.6 0.0062 16.3 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|145591512|ref|YP_001153514.1| - 0.00015 22.0 12.9 0.032 14.7 2.7 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591512|ref|YP_001153514.1| - 0.00018 21.6 9.1 0.0069 16.5 10.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591512|ref|YP_001153514.1| - 0.00022 21.1 15.8 0.0079 16.2 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591512|ref|YP_001153514.1| - 0.00063 19.8 7.6 0.055 13.6 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591512|ref|YP_001153514.1| - 0.0019 18.2 11.5 0.23 11.7 2.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain CCG PF02754.16 gi|145591512|ref|YP_001153514.1| - 0.0082 16.3 0.1 8.3 6.7 0.0 3.3 3 0 0 3 3 3 1 Cysteine-rich domain Fer4_16 PF13484.6 gi|145591512|ref|YP_001153514.1| - 0.011 16.7 11.3 0.11 13.4 11.4 2.5 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|145591512|ref|YP_001153514.1| - 0.026 14.7 4.2 0.67 10.2 0.1 3.1 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145591512|ref|YP_001153514.1| - 0.05 14.4 4.2 5.2 8.0 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145591512|ref|YP_001153514.1| - 4.5 7.9 10.7 13 6.4 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|145591512|ref|YP_001153514.1| - 4.8 8.4 17.7 2.9 9.0 5.8 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain FLILHELTA PF10306.9 gi|145591513|ref|YP_001153515.1| - 0.1 13.0 3.8 0.4 11.1 3.7 2.0 1 1 0 1 1 1 0 Hypothetical protein FLILHELTA NiFe_hyd_SSU_C PF14720.6 gi|145591514|ref|YP_001153516.1| - 1.5e-20 73.3 1.2 3e-20 72.4 1.2 1.5 1 0 0 1 1 1 1 NiFe/NiFeSe hydrogenase small subunit C-terminal Oxidored_q6 PF01058.22 gi|145591514|ref|YP_001153516.1| - 9.3e-17 61.1 0.0 3.7e-16 59.2 0.0 2.1 2 1 0 2 2 2 1 NADH ubiquinone oxidoreductase, 20 Kd subunit TAT_signal PF10518.9 gi|145591514|ref|YP_001153516.1| - 0.0018 18.0 0.4 0.0018 18.0 0.4 4.3 4 0 0 4 4 4 1 TAT (twin-arginine translocation) pathway signal sequence HTH_IclR PF09339.10 gi|145591515|ref|YP_001153517.1| - 0.0098 15.7 0.1 0.38 10.6 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|145591515|ref|YP_001153517.1| - 0.045 14.1 0.1 2.9 8.3 0.0 2.2 1 1 1 2 2 2 0 Transcriptional regulator TrmB PF01978.19 gi|145591515|ref|YP_001153517.1| - 0.048 13.5 0.0 0.084 12.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|145591515|ref|YP_001153517.1| - 0.083 12.8 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 MarR family HemN_C PF06969.16 gi|145591515|ref|YP_001153517.1| - 0.13 12.4 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain NikR_C PF08753.11 gi|145591518|ref|YP_001153520.1| - 1.4e-24 86.0 1.0 2.5e-24 85.3 1.0 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain E3_UFM1_ligase PF09743.9 gi|145591518|ref|YP_001153520.1| - 0.016 14.9 0.1 0.062 12.9 0.0 1.7 2 0 0 2 2 2 0 E3 UFM1-protein ligase 1 HypA PF01155.19 gi|145591519|ref|YP_001153521.1| - 5.6e-21 74.7 0.0 6.4e-21 74.5 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|145591519|ref|YP_001153521.1| - 0.00055 20.0 1.2 0.52 10.5 0.2 2.3 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|145591519|ref|YP_001153521.1| - 0.0023 17.4 0.1 0.52 9.9 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|145591519|ref|YP_001153521.1| - 0.0069 16.2 2.1 0.27 11.2 0.2 2.3 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.20 gi|145591519|ref|YP_001153521.1| - 0.0096 15.9 1.9 0.5 10.4 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin Zn_ribbon_SprT PF17283.2 gi|145591519|ref|YP_001153521.1| - 0.01 15.7 0.8 0.47 10.4 0.2 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-Dof PF02701.15 gi|145591519|ref|YP_001153521.1| - 0.015 15.5 0.9 1.5 9.0 0.1 2.2 2 0 0 2 2 2 0 Dof domain, zinc finger Zn_Tnp_IS1595 PF12760.7 gi|145591519|ref|YP_001153521.1| - 0.016 15.2 1.1 3 7.9 0.0 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|145591519|ref|YP_001153521.1| - 0.018 14.4 1.5 0.18 11.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|145591519|ref|YP_001153521.1| - 0.03 14.8 2.8 1.9 9.1 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger double domain TFIIS_C PF01096.18 gi|145591519|ref|YP_001153521.1| - 0.034 14.0 1.6 2.3 8.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) eIF-5_eIF-2B PF01873.17 gi|145591519|ref|YP_001153521.1| - 0.064 13.1 0.1 0.99 9.3 0.0 2.1 2 0 0 2 2 2 0 Domain found in IF2B/IF5 DUF35_N PF12172.8 gi|145591519|ref|YP_001153521.1| - 0.069 13.0 2.2 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L32p PF01783.23 gi|145591519|ref|YP_001153521.1| - 0.073 13.3 0.1 10 6.5 0.0 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family Nudix_N_2 PF14803.6 gi|145591519|ref|YP_001153521.1| - 0.077 12.9 2.6 1.8 8.5 0.6 2.4 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|145591519|ref|YP_001153521.1| - 0.083 12.8 1.5 7.9 6.5 0.0 2.7 2 1 1 3 3 3 0 Putative transposase DNA-binding domain zf-AN1 PF01428.16 gi|145591519|ref|YP_001153521.1| - 0.11 12.7 0.7 13 6.1 0.1 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger TackOD1 PF18551.1 gi|145591519|ref|YP_001153521.1| - 0.13 11.9 0.2 1.8 8.2 0.1 2.1 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 zinc_ribbon_2 PF13240.6 gi|145591519|ref|YP_001153521.1| - 0.16 11.7 3.2 0.97 9.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|145591519|ref|YP_001153521.1| - 0.17 12.3 7.9 1.9 8.9 0.7 3.0 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|145591519|ref|YP_001153521.1| - 0.21 11.6 1.2 8.6 6.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|145591519|ref|YP_001153521.1| - 0.26 12.0 6.1 3.6 8.3 2.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.13 gi|145591519|ref|YP_001153521.1| - 0.33 10.7 5.4 6.9 6.5 0.1 2.3 2 0 0 2 2 2 0 InsA N-terminal domain zf-HIT PF04438.16 gi|145591519|ref|YP_001153521.1| - 0.69 9.8 5.6 9 6.3 1.2 2.2 2 0 0 2 2 2 0 HIT zinc finger Rubredoxin_2 PF18073.1 gi|145591519|ref|YP_001153521.1| - 0.79 9.5 10.0 0.53 10.1 2.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain UPF0547 PF10571.9 gi|145591519|ref|YP_001153521.1| - 1.2 9.3 6.1 3.4 7.9 0.9 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ParA PF10609.9 gi|145591520|ref|YP_001153522.1| - 3.1e-35 121.8 0.1 3.8e-35 121.5 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|145591520|ref|YP_001153522.1| - 2.9e-05 24.0 0.3 0.03 14.3 0.1 2.1 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|145591520|ref|YP_001153522.1| - 4.6e-05 23.5 0.1 5.3e-05 23.3 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|145591520|ref|YP_001153522.1| - 9.3e-05 21.7 1.1 0.11 11.6 1.2 2.4 1 1 0 2 2 2 2 Anion-transporting ATPase Zeta_toxin PF06414.12 gi|145591520|ref|YP_001153522.1| - 0.03 13.6 0.0 0.12 11.7 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|145591520|ref|YP_001153522.1| - 0.16 11.6 0.3 0.35 10.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AMP-binding PF00501.28 gi|145591521|ref|YP_001153523.1| - 2.8e-47 161.3 0.1 2.9e-26 92.0 0.1 2.1 2 0 0 2 2 2 2 AMP-binding enzyme ACAS_N PF16177.5 gi|145591521|ref|YP_001153523.1| - 4.3e-10 39.4 0.2 8.8e-10 38.4 0.2 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|145591521|ref|YP_001153523.1| - 1.5e-09 38.7 2.1 1.5e-09 38.7 2.1 2.1 3 0 0 3 3 3 1 AMP-binding enzyme C-terminal domain AIRS_C PF02769.22 gi|145591522|ref|YP_001153524.1| - 8.2e-25 87.7 0.1 1.5e-24 86.9 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|145591522|ref|YP_001153524.1| - 5.8e-14 52.5 1.9 7.5e-14 52.2 0.3 2.0 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain Lactamase_B_3 PF13483.6 gi|145591523|ref|YP_001153525.1| - 2.5e-20 73.0 0.0 3.3e-20 72.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|145591523|ref|YP_001153525.1| - 4.2e-14 52.5 0.5 7.5e-10 38.6 0.0 2.2 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591523|ref|YP_001153525.1| - 0.00011 22.3 6.7 0.034 14.1 6.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily THUMP PF02926.17 gi|145591524|ref|YP_001153526.1| - 8.4e-15 55.1 0.5 1.1e-14 54.8 0.5 1.2 1 0 0 1 1 1 1 THUMP domain Abhydrolase_1 PF00561.20 gi|145591525|ref|YP_001153527.1| - 2.4e-13 50.3 0.0 3.6e-07 30.1 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|145591525|ref|YP_001153527.1| - 3e-10 41.1 4.7 0.00037 21.2 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|145591525|ref|YP_001153527.1| - 0.064 12.5 0.0 0.15 11.3 0.0 1.6 2 1 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|145591525|ref|YP_001153527.1| - 0.19 11.9 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein Pterin_bind PF00809.22 gi|145591526|ref|YP_001153528.1| - 1.5e-47 162.4 0.0 1.4e-35 123.2 0.0 2.1 2 0 0 2 2 2 2 Pterin binding enzyme CdhD PF03599.16 gi|145591526|ref|YP_001153528.1| - 0.044 12.5 0.1 0.076 11.7 0.1 1.3 1 1 0 1 1 1 0 CO dehydrogenase/acetyl-CoA synthase delta subunit DUF2710 PF10921.8 gi|145591527|ref|YP_001153529.1| - 0.056 13.9 0.0 0.07 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2710) Radical_SAM PF04055.21 gi|145591528|ref|YP_001153530.1| - 2.5e-26 93.0 0.1 4.6e-26 92.2 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|145591528|ref|YP_001153530.1| - 4.5e-16 58.7 0.0 9.1e-16 57.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|145591528|ref|YP_001153530.1| - 0.016 15.2 0.8 0.035 14.1 0.8 1.6 1 0 0 1 1 1 0 TRAM domain TRAM_2 PF18693.1 gi|145591528|ref|YP_001153530.1| - 0.06 13.5 3.1 0.36 11.0 3.1 2.2 1 1 0 1 1 1 0 TRAM domain DUF1450 PF07293.11 gi|145591528|ref|YP_001153530.1| - 0.1 12.4 0.1 0.43 10.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1450) PaREP1 PF05942.11 gi|145591529|ref|YP_001153531.1| - 1.2e-28 99.3 0.1 1.4e-28 99.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family tRNA-synt_1g PF09334.11 gi|145591530|ref|YP_001153532.1| - 6.9e-153 509.0 0.0 8.5e-153 508.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|145591530|ref|YP_001153532.1| - 2.2e-11 42.7 0.4 2.1e-06 26.3 0.1 3.5 2 2 1 3 3 3 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|145591530|ref|YP_001153532.1| - 2.2e-08 34.2 0.3 3.7e-08 33.5 0.3 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|145591530|ref|YP_001153532.1| - 0.0011 18.3 0.0 0.0094 15.3 0.0 2.0 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|145591530|ref|YP_001153532.1| - 0.059 13.4 4.0 0.12 12.5 4.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|145591530|ref|YP_001153532.1| - 0.16 11.7 8.8 3 7.7 1.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|145591530|ref|YP_001153532.1| - 0.53 10.5 6.3 2 8.7 0.6 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain SNARE_assoc PF09335.11 gi|145591531|ref|YP_001153533.1| - 9.7e-10 39.0 5.6 9.7e-10 39.0 5.6 2.7 1 1 2 3 3 3 1 SNARE associated Golgi protein Prenyltransf PF01255.19 gi|145591532|ref|YP_001153534.1| - 1.2e-64 217.9 0.0 1.3e-64 217.8 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase tRNA_bind PF01588.20 gi|145591533|ref|YP_001153535.1| - 3.9e-26 91.0 0.3 4.6e-26 90.8 0.3 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain Big_3_5 PF16640.5 gi|145591535|ref|YP_001153537.1| - 1.7e-16 60.1 8.1 0.0021 18.2 0.0 7.4 7 0 0 7 7 7 7 Bacterial Ig-like domain (group 3) HAD_2 PF13419.6 gi|145591536|ref|YP_001153538.1| - 1.8e-11 44.5 0.0 2.6e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145591536|ref|YP_001153538.1| - 3.6e-08 34.0 0.0 7.8e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|145591536|ref|YP_001153538.1| - 1.1e-05 25.4 0.0 2e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|145591536|ref|YP_001153538.1| - 0.017 15.5 0.1 0.033 14.6 0.0 1.6 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|145591536|ref|YP_001153538.1| - 0.062 13.4 0.0 3.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase AAA_25 PF13481.6 gi|145591537|ref|YP_001153539.1| - 0.0002 21.0 0.5 0.0031 17.1 0.5 2.2 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|145591537|ref|YP_001153539.1| - 0.00031 20.8 0.0 0.00098 19.2 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|145591537|ref|YP_001153539.1| - 0.0034 17.3 1.9 0.14 12.1 1.6 2.7 2 1 1 3 3 3 1 AAA domain ParA PF10609.9 gi|145591537|ref|YP_001153539.1| - 0.02 14.4 0.1 0.084 12.3 0.0 1.9 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|145591537|ref|YP_001153539.1| - 0.035 13.3 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Anion-transporting ATPase Vault_4 PF17796.1 gi|145591539|ref|YP_001153541.1| - 0.11 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Major Vault Protein repeat domain AAA_17 PF13207.6 gi|145591540|ref|YP_001153542.1| - 0.035 14.5 0.4 0.076 13.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain SBP_bac_3 PF00497.20 gi|145591541|ref|YP_001153543.1| - 2.3e-51 174.4 0.1 2.7e-51 174.1 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|145591541|ref|YP_001153543.1| - 0.00012 22.2 0.0 0.00024 21.3 0.0 1.5 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site Phosphonate-bd PF12974.7 gi|145591541|ref|YP_001153543.1| - 0.0036 16.9 0.2 0.052 13.1 0.2 2.1 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|145591541|ref|YP_001153543.1| - 0.0038 17.2 0.2 0.013 15.5 0.2 1.8 1 1 0 1 1 1 1 NMT1/THI5 like LysR_substrate PF03466.20 gi|145591541|ref|YP_001153543.1| - 0.049 13.0 0.1 1.2 8.4 0.0 2.2 2 0 0 2 2 2 0 LysR substrate binding domain FtsJ PF01728.19 gi|145591541|ref|YP_001153543.1| - 0.094 12.8 0.1 0.23 11.5 0.1 1.5 1 1 1 2 2 2 0 FtsJ-like methyltransferase ketoacyl-synt PF00109.26 gi|145591541|ref|YP_001153543.1| - 0.2 11.2 1.8 1.4 8.4 0.2 2.4 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain DUF192 PF02643.15 gi|145591542|ref|YP_001153544.1| - 6.9e-13 48.6 0.0 8.8e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 SIR2 PF02146.17 gi|145591543|ref|YP_001153545.1| - 2.1e-53 180.9 0.0 2.5e-53 180.6 0.0 1.1 1 0 0 1 1 1 1 Sir2 family zf-ribbon_3 PF13248.6 gi|145591543|ref|YP_001153545.1| - 0.0091 15.4 1.4 0.1 12.0 0.2 2.3 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145591543|ref|YP_001153545.1| - 0.02 14.4 0.6 0.043 13.3 0.6 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|145591543|ref|YP_001153545.1| - 0.052 13.6 0.2 0.11 12.5 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.6 gi|145591543|ref|YP_001153545.1| - 0.068 13.1 0.9 0.13 12.2 0.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|145591543|ref|YP_001153545.1| - 0.068 13.3 1.3 0.22 11.7 1.3 1.8 1 1 1 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|145591543|ref|YP_001153545.1| - 0.15 12.1 0.2 0.28 11.2 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_ribbon_SprT PF17283.2 gi|145591543|ref|YP_001153545.1| - 0.33 10.9 3.0 1.1 9.2 3.0 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DUF309 PF03745.14 gi|145591544|ref|YP_001153546.1| - 1.9e-16 59.5 0.1 3e-16 58.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) GPW_gp25 PF04965.14 gi|145591544|ref|YP_001153546.1| - 0.16 11.8 0.1 2.9 7.7 0.0 2.1 2 0 0 2 2 2 0 Gene 25-like lysozyme CBS PF00571.28 gi|145591545|ref|YP_001153547.1| - 2.1e-31 108.1 6.0 4.4e-15 55.9 0.2 2.1 2 0 0 2 2 2 2 CBS domain Phage_SSB PF16773.5 gi|145591545|ref|YP_001153547.1| - 0.0059 16.6 0.2 0.012 15.7 0.1 1.5 2 0 0 2 2 2 1 Lactococcus phage single-stranded DNA binding protein Glyco_hydro_38 PF18438.1 gi|145591545|ref|YP_001153547.1| - 0.0083 16.2 0.1 4.3 7.4 0.0 2.2 2 0 0 2 2 2 2 Glycosyl hydrolases family 38 C-terminal domain 1 DUF3659 PF12396.8 gi|145591545|ref|YP_001153547.1| - 0.029 14.3 1.0 4.1 7.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) PRC PF05239.16 gi|145591545|ref|YP_001153547.1| - 0.03 14.4 6.0 0.078 13.1 0.1 3.1 1 1 1 2 2 2 0 PRC-barrel domain IF3_N PF05198.16 gi|145591545|ref|YP_001153547.1| - 0.037 14.3 0.5 4 7.8 0.0 2.6 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain UPF0253 PF06786.12 gi|145591547|ref|YP_001153549.1| - 0.17 12.2 0.0 0.27 11.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0253) NTP_transferase PF00483.23 gi|145591550|ref|YP_001153552.1| - 6.5e-37 127.5 0.0 7.6e-37 127.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|145591550|ref|YP_001153552.1| - 6.3e-14 52.6 0.0 9.8e-14 52.0 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|145591550|ref|YP_001153552.1| - 0.00016 21.5 0.0 0.00039 20.2 0.0 1.8 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase tRNA-synt_1c PF00749.21 gi|145591551|ref|YP_001153553.1| - 5.9e-73 245.5 0.0 9.5e-73 244.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|145591551|ref|YP_001153553.1| - 5.7e-25 88.2 0.0 1.1e-24 87.2 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain DUF354 PF04007.12 gi|145591552|ref|YP_001153554.1| - 6.4e-35 120.8 0.0 7.9e-35 120.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) AAA_18 PF13238.6 gi|145591554|ref|YP_001153556.1| - 1.2e-12 48.5 0.0 2.1e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|145591554|ref|YP_001153556.1| - 2.1e-08 34.7 0.4 2.7e-07 31.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|145591554|ref|YP_001153556.1| - 7.3e-05 23.1 0.1 0.00013 22.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591554|ref|YP_001153556.1| - 0.00019 21.9 0.0 0.00089 19.7 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|145591554|ref|YP_001153556.1| - 0.00024 21.1 0.9 0.001 19.0 0.3 2.0 1 1 1 2 2 2 1 NTPase AAA PF00004.29 gi|145591554|ref|YP_001153556.1| - 0.00065 20.1 0.1 0.001 19.5 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|145591554|ref|YP_001153556.1| - 0.00072 19.7 0.1 0.0018 18.4 0.1 1.6 1 0 0 1 1 1 1 Adenylate kinase AAA_22 PF13401.6 gi|145591554|ref|YP_001153556.1| - 0.0035 17.6 0.1 0.014 15.7 0.1 1.9 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|145591554|ref|YP_001153556.1| - 0.0088 15.7 0.5 0.015 14.9 0.5 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_33 PF13671.6 gi|145591554|ref|YP_001153556.1| - 0.0095 16.1 0.1 0.025 14.8 0.1 1.7 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|145591554|ref|YP_001153556.1| - 0.012 15.5 0.1 5.1 6.9 0.1 2.6 1 1 0 2 2 2 0 Deoxynucleoside kinase Cytidylate_kin PF02224.18 gi|145591554|ref|YP_001153556.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase ATP_bind_1 PF03029.17 gi|145591554|ref|YP_001153556.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|145591554|ref|YP_001153556.1| - 0.036 13.8 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|145591554|ref|YP_001153556.1| - 0.049 13.4 0.1 0.095 12.4 0.1 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|145591554|ref|YP_001153556.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.6 1 1 0 1 1 1 0 Thymidylate kinase Viral_helicase1 PF01443.18 gi|145591554|ref|YP_001153556.1| - 0.12 12.1 0.1 0.26 11.0 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|145591554|ref|YP_001153556.1| - 0.17 12.2 0.2 0.22 11.8 0.2 1.4 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.11 gi|145591554|ref|YP_001153556.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) tRNA-synt_2 PF00152.20 gi|145591555|ref|YP_001153557.1| - 3.5e-89 299.0 0.0 4.2e-89 298.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|145591555|ref|YP_001153557.1| - 2.6e-13 49.7 0.0 5.3e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|145591555|ref|YP_001153557.1| - 0.0033 16.9 0.2 0.022 14.2 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) NAD_binding_2 PF03446.15 gi|145591557|ref|YP_001153559.1| - 1.4e-18 67.5 0.1 4.5e-18 65.9 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|145591557|ref|YP_001153559.1| - 4.1e-11 43.2 1.5 7.1e-11 42.4 1.5 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|145591557|ref|YP_001153559.1| - 2.7e-05 23.6 0.0 5.6e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|145591557|ref|YP_001153559.1| - 8.5e-05 22.6 0.1 0.00018 21.5 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|145591557|ref|YP_001153559.1| - 0.00012 22.1 0.0 0.00024 21.0 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|145591557|ref|YP_001153559.1| - 0.00015 22.3 0.0 0.0026 18.3 0.0 2.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|145591557|ref|YP_001153559.1| - 0.0043 17.6 0.3 0.18 12.3 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain ApbA PF02558.16 gi|145591557|ref|YP_001153559.1| - 0.0076 15.9 0.0 0.014 15.1 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|145591557|ref|YP_001153559.1| - 0.008 16.2 0.0 0.028 14.5 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase DUF2325 PF10087.9 gi|145591557|ref|YP_001153559.1| - 0.028 14.5 0.0 2.7 8.2 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2325) TrkA_N PF02254.18 gi|145591557|ref|YP_001153559.1| - 0.074 13.3 0.2 18 5.6 0.0 3.1 2 1 1 3 3 3 0 TrkA-N domain Sua5_yciO_yrdC PF01300.18 gi|145591558|ref|YP_001153560.1| - 6.9e-52 175.5 0.0 1.1e-51 174.9 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|145591558|ref|YP_001153560.1| - 5.9e-28 98.1 0.0 9.1e-28 97.5 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding Methyltransf_25 PF13649.6 gi|145591559|ref|YP_001153561.1| - 1.1e-10 42.0 0.1 1.9e-10 41.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145591559|ref|YP_001153561.1| - 4.7e-09 36.8 0.1 7.6e-09 36.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|145591559|ref|YP_001153561.1| - 4e-05 23.1 0.0 6.9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|145591559|ref|YP_001153561.1| - 0.00058 19.7 0.0 0.0012 18.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145591559|ref|YP_001153561.1| - 0.00061 19.6 0.0 0.0017 18.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|145591559|ref|YP_001153561.1| - 0.00094 18.6 0.0 0.0012 18.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|145591559|ref|YP_001153561.1| - 0.07 12.9 0.1 0.36 10.5 0.1 2.0 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Pribosyltran PF00156.27 gi|145591560|ref|YP_001153562.1| - 6.8e-19 67.9 0.2 1.3e-18 67.1 0.2 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran_N PF13793.6 gi|145591560|ref|YP_001153562.1| - 1e-18 67.3 0.0 2.5e-18 66.1 0.0 1.7 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.6 gi|145591560|ref|YP_001153562.1| - 6.1e-07 29.7 0.0 1.2e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|145591560|ref|YP_001153562.1| - 0.0027 17.2 0.1 0.0041 16.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase UPRTase PF14681.6 gi|145591560|ref|YP_001153562.1| - 0.015 14.7 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_29 PF13551.6 gi|145591560|ref|YP_001153562.1| - 0.12 12.4 0.0 0.7 9.9 0.0 2.3 2 1 1 3 3 3 0 Winged helix-turn helix HHH_4 PF14490.6 gi|145591560|ref|YP_001153562.1| - 0.16 12.0 0.0 0.33 11.0 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain Hist_deacetyl PF00850.19 gi|145591561|ref|YP_001153563.1| - 5.8e-67 226.3 0.0 7.3e-67 226.0 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain SpoIIIAH PF12685.7 gi|145591562|ref|YP_001153564.1| - 0.0055 16.6 6.8 0.0062 16.4 6.8 1.0 1 0 0 1 1 1 1 SpoIIIAH-like protein TFIIE-A_C PF11521.8 gi|145591562|ref|YP_001153564.1| - 0.53 10.6 5.2 1.6 9.1 5.2 1.7 1 1 0 1 1 1 0 C-terminal general transcription factor TFIIE alpha Creatininase PF02633.14 gi|145591563|ref|YP_001153565.1| - 8.9e-38 130.1 0.0 1.1e-37 129.8 0.0 1.1 1 0 0 1 1 1 1 Creatinine amidohydrolase GCH_III PF05165.12 gi|145591564|ref|YP_001153566.1| - 1.9e-32 112.5 0.0 5e-18 65.3 0.0 2.0 1 1 1 2 2 2 2 GTP cyclohydrolase III RibD_C PF01872.17 gi|145591565|ref|YP_001153567.1| - 1.7e-47 161.9 0.0 1.9e-47 161.7 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain PALP PF00291.25 gi|145591565|ref|YP_001153567.1| - 0.031 13.7 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DHBP_synthase PF00926.19 gi|145591566|ref|YP_001153568.1| - 2.7e-40 138.0 0.0 3e-40 137.8 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CxxCxxCC PF03692.15 gi|145591567|ref|YP_001153569.1| - 1.9e-17 63.7 1.4 2.5e-17 63.3 1.4 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain FAD_binding_3 PF01494.19 gi|145591568|ref|YP_001153570.1| - 4.9e-16 58.9 2.3 3.1e-10 39.8 0.0 3.2 2 1 1 3 3 3 3 FAD binding domain FAD_oxidored PF12831.7 gi|145591568|ref|YP_001153570.1| - 1.7e-07 31.0 0.1 1.7e-07 31.0 0.1 1.7 2 0 0 2 2 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145591568|ref|YP_001153570.1| - 8.3e-06 25.2 0.0 2.1e-05 23.9 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|145591568|ref|YP_001153570.1| - 3.8e-05 23.0 0.0 8.4e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Thi4 family FAD_binding_2 PF00890.24 gi|145591568|ref|YP_001153570.1| - 5.2e-05 22.5 0.9 0.00024 20.3 0.0 2.2 2 1 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|145591568|ref|YP_001153570.1| - 7.6e-05 22.0 0.0 7.6e-05 22.0 0.0 1.7 2 0 0 2 2 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|145591568|ref|YP_001153570.1| - 0.00024 20.1 0.1 0.49 9.2 0.0 2.4 2 1 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|145591568|ref|YP_001153570.1| - 0.00028 19.7 0.1 0.00044 19.1 0.1 1.2 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|145591568|ref|YP_001153570.1| - 0.00064 18.9 1.6 0.057 12.5 0.2 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|145591568|ref|YP_001153570.1| - 0.0045 16.3 0.6 0.0078 15.5 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|145591568|ref|YP_001153570.1| - 0.015 15.5 0.0 0.015 15.5 0.0 2.7 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|145591568|ref|YP_001153570.1| - 0.019 14.2 0.0 0.049 12.9 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|145591568|ref|YP_001153570.1| - 0.024 14.2 2.1 0.039 13.5 0.4 2.1 1 1 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|145591568|ref|YP_001153570.1| - 0.11 13.1 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase QRPTase_C PF01729.19 gi|145591569|ref|YP_001153571.1| - 1e-16 61.2 0.0 1.4e-16 60.7 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_N PF17767.1 gi|145591569|ref|YP_001153571.1| - 1.7e-05 25.2 0.0 0.007 16.7 0.0 2.4 1 1 1 2 2 2 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain QRPTase_N PF02749.16 gi|145591569|ref|YP_001153571.1| - 0.00093 19.2 0.0 0.0019 18.2 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_C PF17956.1 gi|145591569|ref|YP_001153571.1| - 0.0061 17.0 0.0 0.013 16.0 0.0 1.4 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain PDDEXK_10 PF07788.11 gi|145591569|ref|YP_001153571.1| - 0.092 12.7 0.0 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Helicase_C_2 PF13307.6 gi|145591570|ref|YP_001153572.1| - 7.7e-24 84.8 0.0 2.8e-23 82.9 0.0 1.8 1 1 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|145591570|ref|YP_001153572.1| - 1.7e-16 60.3 0.5 3.4e-16 59.4 0.5 1.5 1 1 0 1 1 1 1 DEAD_2 HBB PF06777.11 gi|145591570|ref|YP_001153572.1| - 2.7e-06 27.2 0.1 4.5e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Helical and beta-bridge domain DEAD PF00270.29 gi|145591570|ref|YP_001153572.1| - 3.7e-05 23.6 0.0 0.013 15.3 0.0 2.2 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|145591570|ref|YP_001153572.1| - 0.00012 22.1 0.0 0.091 12.8 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|145591570|ref|YP_001153572.1| - 0.095 12.3 0.0 0.25 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain PaaX PF07848.12 gi|145591570|ref|YP_001153572.1| - 0.11 12.8 0.1 1.3 9.3 0.0 2.4 1 1 1 2 2 2 0 PaaX-like protein TMEM100 PF16311.5 gi|145591571|ref|YP_001153573.1| - 0.02 14.5 0.9 0.024 14.2 0.9 1.1 1 0 0 1 1 1 0 Transmembrane protein 100 DUF751 PF05421.11 gi|145591571|ref|YP_001153573.1| - 0.092 13.5 3.6 0.15 12.8 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF751) DUF2231 PF09990.9 gi|145591571|ref|YP_001153573.1| - 0.58 10.6 4.9 0.78 10.2 4.9 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) Topoisom_bac PF01131.20 gi|145591572|ref|YP_001153574.1| - 6.4e-103 344.9 0.0 8.6e-103 344.5 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|145591572|ref|YP_001153574.1| - 3.1e-18 65.9 0.1 2e-17 63.3 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Toprim_4 PF13662.6 gi|145591572|ref|YP_001153574.1| - 0.00083 19.8 0.1 0.0026 18.2 0.0 1.9 2 0 0 2 2 2 1 Toprim domain CdvA PF18822.1 gi|145591572|ref|YP_001153574.1| - 0.001 18.9 0.9 0.0022 17.8 0.9 1.5 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Toprim_2 PF13155.6 gi|145591572|ref|YP_001153574.1| - 0.17 12.3 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 Toprim-like Diphthamide_syn PF01866.17 gi|145591573|ref|YP_001153575.1| - 5.6e-19 68.7 0.0 4.9e-17 62.3 0.0 2.1 2 0 0 2 2 2 2 Putative diphthamide synthesis protein DUF87 PF01935.17 gi|145591574|ref|YP_001153576.1| - 4.6e-43 147.9 0.0 8.2e-43 147.1 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain HAS-barrel PF09378.10 gi|145591574|ref|YP_001153576.1| - 1.2e-07 31.8 0.8 5.1e-07 29.8 0.4 2.2 1 1 1 2 2 2 1 HAS barrel domain AAA_10 PF12846.7 gi|145591574|ref|YP_001153576.1| - 3.9e-07 29.3 0.0 2.4e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain DUF853 PF05872.12 gi|145591574|ref|YP_001153576.1| - 3.7e-05 22.5 0.1 0.035 12.7 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|145591574|ref|YP_001153576.1| - 0.012 14.5 0.0 0.3 10.0 0.0 2.5 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain Zot PF05707.12 gi|145591574|ref|YP_001153576.1| - 0.059 13.0 0.0 0.27 10.8 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) GTP_EFTU PF00009.27 gi|145591575|ref|YP_001153577.1| - 1.8e-50 171.2 0.0 3.9e-50 170.1 0.0 1.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|145591575|ref|YP_001153577.1| - 4e-38 130.2 0.2 3.6e-37 127.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|145591575|ref|YP_001153577.1| - 7.2e-18 64.8 5.3 2.1e-17 63.3 4.1 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.6 gi|145591575|ref|YP_001153577.1| - 6.6e-07 29.1 2.5 2.1e-06 27.5 2.5 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.23 gi|145591575|ref|YP_001153577.1| - 3.3e-06 27.2 0.1 4.1e-05 23.6 0.0 2.7 2 1 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|145591575|ref|YP_001153577.1| - 0.0008 19.0 0.4 0.035 13.7 0.1 2.8 2 1 0 2 2 2 1 Ferrous iron transport protein B Septin PF00735.18 gi|145591575|ref|YP_001153577.1| - 0.0016 17.8 0.0 0.0037 16.6 0.0 1.6 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.23 gi|145591575|ref|YP_001153577.1| - 0.014 15.5 0.1 2 8.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Gtr1_RagA PF04670.12 gi|145591575|ref|YP_001153577.1| - 0.067 12.5 0.0 0.14 11.5 0.0 1.4 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region DUF5128 PF17170.4 gi|145591575|ref|YP_001153577.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 6-bladed beta-propeller Ribosomal_L34e PF01199.18 gi|145591576|ref|YP_001153578.1| - 1.9e-14 53.7 0.2 3e-14 53.1 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L34e Cytidylate_kin2 PF13189.6 gi|145591577|ref|YP_001153579.1| - 1.4e-20 74.1 0.2 2.6e-18 66.8 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family Cytidylate_kin PF02224.18 gi|145591577|ref|YP_001153579.1| - 3.4e-16 59.6 0.8 1.2e-08 35.0 0.2 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_18 PF13238.6 gi|145591577|ref|YP_001153579.1| - 4.5e-16 59.6 0.0 6e-16 59.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|145591577|ref|YP_001153579.1| - 2.6e-15 57.0 0.0 5.5e-15 56.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|145591577|ref|YP_001153579.1| - 5.1e-09 36.4 0.4 2.1e-07 31.2 0.4 2.2 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|145591577|ref|YP_001153579.1| - 1.1e-06 28.9 0.5 1.8e-05 25.0 0.5 2.1 1 1 0 1 1 1 1 Shikimate kinase PRK PF00485.18 gi|145591577|ref|YP_001153579.1| - 3.7e-05 23.6 0.2 0.02 14.6 0.1 2.2 1 1 1 2 2 2 2 Phosphoribulokinase / Uridine kinase family ADK PF00406.22 gi|145591577|ref|YP_001153579.1| - 6.7e-05 23.0 0.0 0.00011 22.3 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA PF00004.29 gi|145591577|ref|YP_001153579.1| - 0.00014 22.3 0.1 0.00022 21.6 0.1 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145591577|ref|YP_001153579.1| - 0.00048 20.5 0.1 0.00066 20.1 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain Thymidylate_kin PF02223.17 gi|145591577|ref|YP_001153579.1| - 0.00071 19.3 0.0 0.65 9.7 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase Zeta_toxin PF06414.12 gi|145591577|ref|YP_001153579.1| - 0.0013 18.1 0.9 0.0018 17.6 0.0 1.6 2 0 0 2 2 2 1 Zeta toxin CoaE PF01121.20 gi|145591577|ref|YP_001153579.1| - 0.0014 18.4 0.2 0.13 11.9 0.0 2.1 1 1 0 2 2 2 1 Dephospho-CoA kinase NB-ARC PF00931.22 gi|145591577|ref|YP_001153579.1| - 0.0017 17.6 0.2 0.0047 16.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain NACHT PF05729.12 gi|145591577|ref|YP_001153579.1| - 0.0017 18.3 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain TsaE PF02367.17 gi|145591577|ref|YP_001153579.1| - 0.0019 18.2 0.1 0.0048 16.9 0.1 1.6 1 1 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE dNK PF01712.19 gi|145591577|ref|YP_001153579.1| - 0.0024 17.8 0.1 1.1 9.1 0.0 2.2 2 0 0 2 2 2 2 Deoxynucleoside kinase NTPase_1 PF03266.15 gi|145591577|ref|YP_001153579.1| - 0.0025 17.7 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 NTPase AAA_28 PF13521.6 gi|145591577|ref|YP_001153579.1| - 0.0032 17.7 0.5 0.0066 16.7 0.5 1.7 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|145591577|ref|YP_001153579.1| - 0.0047 16.4 0.0 0.0058 16.1 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|145591577|ref|YP_001153579.1| - 0.0054 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) CPT PF07931.12 gi|145591577|ref|YP_001153579.1| - 0.011 15.5 0.1 0.13 12.1 0.0 2.0 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_24 PF13479.6 gi|145591577|ref|YP_001153579.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145591577|ref|YP_001153579.1| - 0.014 15.1 0.1 0.029 14.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|145591577|ref|YP_001153579.1| - 0.021 15.1 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|145591577|ref|YP_001153579.1| - 0.035 13.9 0.1 0.12 12.1 0.1 1.8 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain DUF2075 PF09848.9 gi|145591577|ref|YP_001153579.1| - 0.035 13.3 0.1 0.071 12.3 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|145591577|ref|YP_001153579.1| - 0.043 13.5 0.0 0.059 13.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_19 PF13245.6 gi|145591577|ref|YP_001153579.1| - 0.054 13.8 0.2 0.11 12.8 0.1 1.5 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|145591577|ref|YP_001153579.1| - 0.058 13.9 0.0 0.064 13.8 0.0 1.3 1 1 0 1 1 1 0 ABC transporter APS_kinase PF01583.20 gi|145591577|ref|YP_001153579.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Adenylylsulphate kinase ATPase PF06745.13 gi|145591577|ref|YP_001153579.1| - 0.11 11.9 0.1 0.23 10.8 0.1 1.7 1 1 0 1 1 1 0 KaiC RNA_helicase PF00910.22 gi|145591577|ref|YP_001153579.1| - 0.16 12.4 0.0 0.26 11.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|145591577|ref|YP_001153579.1| - 0.18 11.1 0.0 0.28 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Pyr_redox_2 PF07992.14 gi|145591578|ref|YP_001153580.1| - 6.4e-31 107.7 0.1 1.2e-30 106.7 0.1 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145591578|ref|YP_001153580.1| - 1.7e-08 34.9 2.9 0.00057 20.4 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145591578|ref|YP_001153580.1| - 2.5e-06 27.0 5.7 0.0028 17.0 0.1 3.5 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|145591578|ref|YP_001153580.1| - 8.3e-06 25.1 8.2 0.13 11.3 0.9 3.2 3 0 0 3 3 3 3 FAD binding domain NAD_binding_8 PF13450.6 gi|145591578|ref|YP_001153580.1| - 1.4e-05 25.3 2.9 9.7e-05 22.5 0.2 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FMO-like PF00743.19 gi|145591578|ref|YP_001153580.1| - 4e-05 22.2 0.0 0.011 14.2 0.0 2.1 2 0 0 2 2 2 2 Flavin-binding monooxygenase-like AlaDh_PNT_C PF01262.21 gi|145591578|ref|YP_001153580.1| - 4.3e-05 22.9 0.7 0.077 12.3 0.0 2.7 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|145591578|ref|YP_001153580.1| - 5.2e-05 22.7 1.6 0.0062 15.8 0.2 2.1 2 0 0 2 2 2 2 FAD binding domain Shikimate_DH PF01488.20 gi|145591578|ref|YP_001153580.1| - 8.3e-05 22.7 0.4 0.064 13.3 0.1 3.1 3 0 0 3 3 3 1 Shikimate / quinate 5-dehydrogenase DAO PF01266.24 gi|145591578|ref|YP_001153580.1| - 0.00032 20.4 2.6 2.1 7.8 0.6 3.1 3 0 0 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|145591578|ref|YP_001153580.1| - 0.00043 19.1 0.4 0.00043 19.1 0.4 2.6 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_7 PF13241.6 gi|145591578|ref|YP_001153580.1| - 0.0011 19.3 1.6 1 9.8 0.1 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|145591578|ref|YP_001153580.1| - 0.0017 17.7 0.3 1.6 7.9 0.0 2.5 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|145591578|ref|YP_001153580.1| - 0.009 15.9 1.5 0.04 13.8 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|145591578|ref|YP_001153580.1| - 0.011 14.8 7.3 2.2 7.2 0.5 3.7 4 0 0 4 4 4 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|145591578|ref|YP_001153580.1| - 0.019 14.3 7.7 0.68 9.2 0.5 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|145591578|ref|YP_001153580.1| - 0.021 14.2 0.1 16 4.8 0.0 3.1 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|145591578|ref|YP_001153580.1| - 0.12 11.6 1.2 0.2 10.8 0.1 1.8 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.6 gi|145591578|ref|YP_001153580.1| - 0.32 11.0 2.9 0.26 11.2 0.5 2.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Fibrillarin PF01269.17 gi|145591579|ref|YP_001153581.1| - 1.8e-102 341.3 0.0 2.1e-102 341.1 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|145591579|ref|YP_001153581.1| - 1.2e-07 31.7 0.0 1.9e-07 31.1 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltr_RsmB-F PF01189.17 gi|145591579|ref|YP_001153581.1| - 0.019 14.6 0.0 0.041 13.5 0.0 1.5 1 1 0 1 1 1 0 16S rRNA methyltransferase RsmB/F GCD14 PF08704.10 gi|145591579|ref|YP_001153581.1| - 0.019 14.7 0.0 0.031 13.9 0.0 1.4 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Ubie_methyltran PF01209.18 gi|145591579|ref|YP_001153581.1| - 0.026 13.9 0.0 0.038 13.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family PaRep2b PF07775.11 gi|145591580|ref|YP_001153582.1| - 2.1e-48 165.1 3.9 2.4e-48 164.9 3.9 1.0 1 0 0 1 1 1 1 PaRep2b protein TPR_21 PF09976.9 gi|145591580|ref|YP_001153582.1| - 0.00061 19.6 0.7 0.00061 19.6 0.7 1.6 2 0 0 2 2 2 1 Tetratricopeptide repeat-like domain TPR_19 PF14559.6 gi|145591580|ref|YP_001153582.1| - 0.00067 20.1 6.0 0.00081 19.9 0.3 3.1 3 0 0 3 3 3 1 Tetratricopeptide repeat FeoA PF04023.14 gi|145591580|ref|YP_001153582.1| - 0.012 15.8 0.1 2.9 8.2 0.1 3.5 1 1 0 2 2 2 0 FeoA domain Sigma70_r1_1 PF03979.14 gi|145591580|ref|YP_001153582.1| - 0.069 13.2 0.1 0.75 9.9 0.1 2.4 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 CBM_X2 PF03442.14 gi|145591580|ref|YP_001153582.1| - 0.091 12.9 0.0 18 5.5 0.0 2.4 2 0 0 2 2 2 0 Carbohydrate binding domain X2 TPR_11 PF13414.6 gi|145591580|ref|YP_001153582.1| - 0.13 12.0 0.2 8.6 6.1 0.1 3.1 3 0 0 3 3 3 0 TPR repeat GramPos_pilinD1 PF16555.5 gi|145591580|ref|YP_001153582.1| - 0.16 12.2 0.2 0.25 11.5 0.2 1.4 1 0 0 1 1 1 0 Gram-positive pilin subunit D1, N-terminal domain TPR_14 PF13428.6 gi|145591580|ref|YP_001153582.1| - 0.19 12.6 7.7 0.55 11.2 0.4 4.0 3 1 1 4 4 4 0 Tetratricopeptide repeat Exog_C PF18026.1 gi|145591580|ref|YP_001153582.1| - 0.26 11.4 0.9 12 6.0 0.0 3.4 4 0 0 4 4 4 0 Endo/exonuclease (EXOG) C-terminal domain TPR_1 PF00515.28 gi|145591580|ref|YP_001153582.1| - 0.95 9.4 5.4 17 5.4 0.0 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|145591580|ref|YP_001153582.1| - 8.8 6.7 10.2 23 5.4 0.1 4.2 4 0 0 4 4 4 0 Tetratricopeptide repeat Polbeta PF18765.1 gi|145591582|ref|YP_001153584.1| - 7.4e-22 77.2 0.0 2.8e-21 75.4 0.0 1.9 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145591582|ref|YP_001153584.1| - 9.7e-10 38.6 1.2 2.8e-09 37.2 0.4 2.1 2 1 1 3 3 3 1 Nucleotidyltransferase domain DUF86 PF01934.17 gi|145591582|ref|YP_001153584.1| - 5.8e-06 26.2 0.0 9.8e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF86 RlaP PF10127.9 gi|145591582|ref|YP_001153584.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family YwpF PF14183.6 gi|145591582|ref|YP_001153584.1| - 0.1 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 YwpF-like protein Nre_N PF04894.12 gi|145591583|ref|YP_001153585.1| - 3.6e-35 122.1 0.0 4.2e-35 121.9 0.0 1.0 1 0 0 1 1 1 1 Archaeal Nre, N-terminal HTH_24 PF13412.6 gi|145591586|ref|YP_001153588.1| - 8.1e-08 31.7 0.1 1.3e-07 31.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|145591586|ref|YP_001153588.1| - 1.9e-06 27.6 0.1 4.3e-06 26.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|145591586|ref|YP_001153588.1| - 6.2e-06 26.2 0.1 1.2e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|145591586|ref|YP_001153588.1| - 0.0006 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|145591586|ref|YP_001153588.1| - 0.0013 18.5 0.0 0.0023 17.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|145591586|ref|YP_001153588.1| - 0.0038 17.1 0.1 0.0079 16.1 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|145591586|ref|YP_001153588.1| - 0.006 16.7 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|145591586|ref|YP_001153588.1| - 0.0092 16.2 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4381 PF14316.6 gi|145591586|ref|YP_001153588.1| - 0.033 14.4 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) HTH_27 PF13463.6 gi|145591586|ref|YP_001153588.1| - 0.036 14.6 0.1 0.07 13.6 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain PsbL PF02419.17 gi|145591586|ref|YP_001153588.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 PsbL protein HTH_micro PF17007.5 gi|145591586|ref|YP_001153588.1| - 0.054 12.3 0.0 0.072 11.9 0.0 1.1 1 0 0 1 1 1 0 HTH-like MarR PF01047.22 gi|145591586|ref|YP_001153588.1| - 0.085 12.8 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.6 gi|145591586|ref|YP_001153588.1| - 0.11 12.5 0.0 0.26 11.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|145591586|ref|YP_001153588.1| - 0.16 12.4 0.0 0.27 11.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PsbX PF06596.11 gi|145591586|ref|YP_001153588.1| - 5.6 7.1 5.8 11 6.1 5.8 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) TauE PF01925.19 gi|145591589|ref|YP_001153591.1| - 7.1e-07 29.1 4.1 7.3e-07 29.1 4.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Nop PF01798.18 gi|145591590|ref|YP_001153592.1| - 6.4e-68 228.7 0.0 9e-68 228.2 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin KNOX2 PF03791.13 gi|145591590|ref|YP_001153592.1| - 0.005 16.3 4.0 0.75 9.4 0.5 3.1 3 0 0 3 3 3 2 KNOX2 domain GatB_N PF02934.15 gi|145591591|ref|YP_001153593.1| - 8.5e-63 212.3 0.0 1.2e-62 211.8 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GAD PF02938.14 gi|145591591|ref|YP_001153593.1| - 2.4e-11 43.7 0.0 1.1e-10 41.6 0.0 2.1 2 0 0 2 2 2 1 GAD domain GatB_Yqey PF02637.18 gi|145591591|ref|YP_001153593.1| - 1.7e-09 37.7 4.4 8.5e-09 35.4 4.4 2.2 1 1 0 1 1 1 1 GatB domain EF-hand_14 PF17959.1 gi|145591591|ref|YP_001153593.1| - 0.013 15.9 0.3 7.7 6.9 0.0 3.1 2 1 1 3 3 3 0 EF-hand domain FliH PF02108.16 gi|145591591|ref|YP_001153593.1| - 0.53 10.3 2.9 0.53 10.4 0.5 2.2 3 0 0 3 3 3 0 Flagellar assembly protein FliH YqeY PF09424.10 gi|145591591|ref|YP_001153593.1| - 2 8.5 9.1 2.2 8.3 6.3 2.3 2 1 0 2 2 2 0 Yqey-like protein PNPase PF03726.14 gi|145591591|ref|YP_001153593.1| - 5 7.7 8.0 38 4.9 0.0 3.8 3 1 1 4 4 4 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain NiFe_hyd_3_EhaA PF17367.2 gi|145591592|ref|YP_001153594.1| - 0.19 11.9 5.4 2.2 8.4 0.3 2.3 1 1 1 2 2 2 0 NiFe-hydrogenase-type-3 Eha complex subunit A RrnaAD PF00398.20 gi|145591594|ref|YP_001153596.1| - 3.3e-42 144.4 0.0 4e-42 144.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|145591594|ref|YP_001153596.1| - 7e-06 26.7 0.0 1.4e-05 25.7 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145591594|ref|YP_001153596.1| - 0.00017 22.2 0.0 0.00044 20.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|145591594|ref|YP_001153596.1| - 0.032 14.2 0.0 0.055 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145591594|ref|YP_001153596.1| - 0.036 14.8 0.0 0.067 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145591594|ref|YP_001153596.1| - 0.045 13.6 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591594|ref|YP_001153596.1| - 0.11 12.3 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B_2 PF12706.7 gi|145591595|ref|YP_001153597.1| - 3.1e-23 82.3 0.1 6.3e-23 81.4 0.1 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591595|ref|YP_001153597.1| - 5e-09 36.5 4.0 6.1e-08 32.9 0.7 2.4 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|145591595|ref|YP_001153597.1| - 0.057 13.3 0.4 0.94 9.4 0.4 2.3 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Methyltransf_23 PF13489.6 gi|145591596|ref|YP_001153598.1| - 2.7e-18 66.3 0.0 3.6e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145591596|ref|YP_001153598.1| - 2e-13 50.8 0.1 3.1e-13 50.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591596|ref|YP_001153598.1| - 3.4e-12 46.9 0.1 8.1e-12 45.7 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145591596|ref|YP_001153598.1| - 3.5e-10 39.9 0.0 2.4e-09 37.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145591596|ref|YP_001153598.1| - 1.3e-09 38.7 0.0 3.3e-09 37.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|145591596|ref|YP_001153598.1| - 2.2e-06 27.9 0.0 4.7e-06 26.8 0.0 1.6 1 1 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|145591596|ref|YP_001153598.1| - 0.00018 21.4 0.0 0.00028 20.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|145591596|ref|YP_001153598.1| - 0.00025 20.5 0.0 0.00046 19.6 0.0 1.5 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase PrmA PF06325.13 gi|145591596|ref|YP_001153598.1| - 0.00092 18.7 0.0 0.0014 18.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|145591596|ref|YP_001153598.1| - 0.0014 18.0 0.1 0.0052 16.1 0.1 1.8 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|145591596|ref|YP_001153598.1| - 0.0058 16.2 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TPR_12 PF13424.6 gi|145591596|ref|YP_001153598.1| - 0.0065 16.7 0.9 0.16 12.3 0.0 2.6 3 0 0 3 3 3 1 Tetratricopeptide repeat Met_10 PF02475.16 gi|145591596|ref|YP_001153598.1| - 0.0095 15.7 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein RrnaAD PF00398.20 gi|145591596|ref|YP_001153598.1| - 0.012 14.7 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.11 gi|145591596|ref|YP_001153598.1| - 0.016 14.1 0.1 0.089 11.7 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|145591596|ref|YP_001153598.1| - 0.019 15.0 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0146 PF03686.13 gi|145591596|ref|YP_001153598.1| - 0.038 13.9 0.0 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_18 PF12847.7 gi|145591596|ref|YP_001153598.1| - 0.047 13.6 0.1 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain TPMT PF05724.11 gi|145591596|ref|YP_001153598.1| - 0.096 12.3 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) MetW PF07021.12 gi|145591596|ref|YP_001153598.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DREV PF05219.12 gi|145591596|ref|YP_001153598.1| - 0.14 11.2 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase DUF938 PF06080.12 gi|145591596|ref|YP_001153598.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) TehB PF03848.14 gi|145591596|ref|YP_001153598.1| - 0.17 11.3 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB T2SSE PF00437.20 gi|145591597|ref|YP_001153599.1| - 1.4e-13 50.5 0.1 2.4e-13 49.8 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|145591597|ref|YP_001153599.1| - 0.00019 22.0 0.0 0.00055 20.5 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591597|ref|YP_001153599.1| - 0.0013 19.1 0.0 0.0027 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|145591597|ref|YP_001153599.1| - 0.0044 17.2 0.0 0.054 13.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|145591597|ref|YP_001153599.1| - 0.0084 16.1 0.0 0.025 14.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain Viral_helicase1 PF01443.18 gi|145591597|ref|YP_001153599.1| - 0.0086 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|145591597|ref|YP_001153599.1| - 0.011 15.0 0.1 0.021 14.1 0.1 1.4 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.17 gi|145591597|ref|YP_001153599.1| - 0.011 15.5 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_28 PF13521.6 gi|145591597|ref|YP_001153599.1| - 0.014 15.7 0.0 0.04 14.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|145591597|ref|YP_001153599.1| - 0.017 14.7 1.2 0.058 13.0 1.2 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145591597|ref|YP_001153599.1| - 0.019 14.7 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|145591597|ref|YP_001153599.1| - 0.023 14.9 0.0 0.055 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145591597|ref|YP_001153599.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|145591597|ref|YP_001153599.1| - 0.025 14.6 0.0 0.057 13.4 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|145591597|ref|YP_001153599.1| - 0.026 14.2 0.0 0.046 13.4 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RuvB_N PF05496.12 gi|145591597|ref|YP_001153599.1| - 0.027 14.2 0.0 0.069 12.9 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA PF00004.29 gi|145591597|ref|YP_001153599.1| - 0.03 14.8 0.0 0.064 13.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|145591597|ref|YP_001153599.1| - 0.039 13.3 0.0 0.094 12.1 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.6 gi|145591597|ref|YP_001153599.1| - 0.044 13.9 0.0 0.084 13.0 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain DnaB_C PF03796.15 gi|145591597|ref|YP_001153599.1| - 0.052 12.9 0.0 0.099 12.0 0.0 1.5 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain MeaB PF03308.16 gi|145591597|ref|YP_001153599.1| - 0.068 12.1 0.2 0.14 11.1 0.0 1.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Thymidylate_kin PF02223.17 gi|145591597|ref|YP_001153599.1| - 0.077 12.7 0.0 0.24 11.1 0.0 1.8 1 1 1 2 2 2 0 Thymidylate kinase ABC_tran PF00005.27 gi|145591597|ref|YP_001153599.1| - 0.086 13.3 0.0 0.22 12.1 0.0 1.6 1 0 0 1 1 1 0 ABC transporter NACHT PF05729.12 gi|145591597|ref|YP_001153599.1| - 0.089 12.7 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.14 gi|145591597|ref|YP_001153599.1| - 0.092 12.7 0.0 0.26 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|145591597|ref|YP_001153599.1| - 0.12 12.0 0.3 0.32 10.7 0.1 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|145591597|ref|YP_001153599.1| - 0.17 11.9 0.1 0.59 10.1 0.0 1.8 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit AMP-binding PF00501.28 gi|145591598|ref|YP_001153600.1| - 2.9e-84 283.1 0.0 3.9e-84 282.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|145591598|ref|YP_001153600.1| - 8.2e-30 103.6 0.6 1.9e-29 102.4 0.6 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|145591598|ref|YP_001153600.1| - 1.1e-11 44.4 4.5 1.1e-11 44.4 4.5 1.9 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus PapJ PF14855.6 gi|145591598|ref|YP_001153600.1| - 0.15 11.7 0.0 1.1 8.9 0.0 2.0 2 0 0 2 2 2 0 Pilus-assembly fibrillin subunit, chaperone DHDPS PF00701.22 gi|145591599|ref|YP_001153601.1| - 1.2e-43 148.9 0.0 1.4e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family FAA_hydrolase PF01557.18 gi|145591600|ref|YP_001153602.1| - 8.3e-68 228.3 0.0 1.1e-67 227.9 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TMEM82 PF15816.5 gi|145591601|ref|YP_001153603.1| - 0.14 11.1 0.4 0.71 8.8 0.0 1.9 1 1 0 2 2 2 0 Transmembrane protein 82 NTP_transf_2 PF01909.23 gi|145591602|ref|YP_001153604.1| - 5.7e-09 36.1 0.0 6.5e-09 36.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145591602|ref|YP_001153604.1| - 5.7e-05 23.1 0.2 0.00013 21.9 0.1 1.6 1 1 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase ABC-3 PF00950.17 gi|145591602|ref|YP_001153604.1| - 0.0034 16.9 0.0 0.0041 16.7 0.0 1.1 1 0 0 1 1 1 1 ABC 3 transport family HEPN PF05168.14 gi|145591603|ref|YP_001153605.1| - 1.3e-33 115.6 0.6 1.6e-33 115.4 0.6 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|145591603|ref|YP_001153605.1| - 0.00037 20.4 2.9 0.0018 18.2 2.8 2.3 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Beta_propel PF09826.9 gi|145591604|ref|YP_001153606.1| - 8.9e-112 374.6 0.0 1.1e-111 374.3 0.0 1.1 1 0 0 1 1 1 1 Beta propeller domain CLP_protease PF00574.23 gi|145591605|ref|YP_001153607.1| - 0.0083 16.0 0.6 0.023 14.6 0.6 1.6 1 1 0 1 1 1 1 Clp protease DUF983 PF06170.12 gi|145591605|ref|YP_001153607.1| - 8.6 6.9 10.9 0.71 10.3 0.9 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF983) Rad51 PF08423.11 gi|145591606|ref|YP_001153608.1| - 7.8e-43 146.6 0.0 9.6e-43 146.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 ATPase PF06745.13 gi|145591606|ref|YP_001153608.1| - 4.4e-11 42.6 0.0 1.8e-10 40.6 0.0 1.9 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|145591606|ref|YP_001153608.1| - 2.3e-08 33.9 0.1 4.2e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|145591606|ref|YP_001153608.1| - 3.7e-07 30.6 0.1 1.3e-06 28.9 0.1 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|145591606|ref|YP_001153608.1| - 4.7e-05 23.0 0.0 5.7e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_24 PF13479.6 gi|145591606|ref|YP_001153608.1| - 0.00014 21.7 0.0 0.00033 20.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain HHH PF00633.23 gi|145591606|ref|YP_001153608.1| - 0.00015 21.5 0.2 0.0094 15.8 0.0 2.8 3 0 0 3 3 3 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|145591606|ref|YP_001153608.1| - 0.024 14.9 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 Pathogenicity locus Bac_DnaA PF00308.18 gi|145591606|ref|YP_001153608.1| - 0.03 14.2 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein DUF4332 PF14229.6 gi|145591606|ref|YP_001153608.1| - 0.04 14.2 0.1 0.57 10.4 0.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4332) AAA_10 PF12846.7 gi|145591606|ref|YP_001153608.1| - 0.043 12.7 0.0 0.063 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain PhoH PF02562.16 gi|145591606|ref|YP_001153608.1| - 0.047 13.1 0.0 0.085 12.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|145591606|ref|YP_001153608.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein IMS_HHH PF11798.8 gi|145591606|ref|YP_001153608.1| - 0.14 12.5 0.0 0.34 11.3 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif EthD PF07110.11 gi|145591608|ref|YP_001153610.1| - 0.011 16.8 0.0 0.019 16.1 0.0 1.3 1 0 0 1 1 1 0 EthD domain SWIM PF04434.17 gi|145591609|ref|YP_001153611.1| - 0.0026 17.4 1.0 0.0056 16.3 1.0 1.5 1 0 0 1 1 1 1 SWIM zinc finger Carb_kinase PF01256.17 gi|145591611|ref|YP_001153613.1| - 1.3e-55 188.5 1.9 1.9e-55 188.0 1.9 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|145591611|ref|YP_001153613.1| - 4.1e-42 144.0 0.3 1.1e-41 142.6 0.3 1.8 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|145591611|ref|YP_001153613.1| - 2.6e-10 40.1 0.7 4.6e-10 39.3 0.7 1.4 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|145591611|ref|YP_001153613.1| - 3.5e-05 23.3 0.2 6.5e-05 22.4 0.2 1.4 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Glyco_transf_4 PF13439.6 gi|145591611|ref|YP_001153613.1| - 0.08 12.9 1.9 3.8 7.5 0.2 2.7 2 1 0 2 2 2 0 Glycosyltransferase Family 4 Phosphodiest PF01663.22 gi|145591612|ref|YP_001153614.1| - 1.1e-14 54.9 0.3 6.7e-08 32.5 0.1 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|145591612|ref|YP_001153614.1| - 9.4e-07 28.5 0.0 0.0002 20.9 0.0 2.2 2 0 0 2 2 2 2 Sulfatase PglZ PF08665.12 gi|145591612|ref|YP_001153614.1| - 8.9e-05 22.6 0.1 0.00085 19.5 0.0 2.0 2 0 0 2 2 2 1 PglZ domain DUF3792 PF12670.7 gi|145591612|ref|YP_001153614.1| - 0.19 11.9 13.6 0.052 13.7 8.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3792) Metalloenzyme PF01676.18 gi|145591612|ref|YP_001153614.1| - 0.21 10.9 0.0 0.32 10.3 0.0 1.2 1 0 0 1 1 1 0 Metalloenzyme superfamily MJ1316 PF04457.12 gi|145591613|ref|YP_001153615.1| - 3.6e-07 30.8 0.0 4.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain Aminotran_3 PF00202.21 gi|145591614|ref|YP_001153616.1| - 1.8e-101 339.8 0.0 2.3e-101 339.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_5 PF00266.19 gi|145591614|ref|YP_001153616.1| - 0.00046 19.2 0.0 0.00068 18.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|145591614|ref|YP_001153616.1| - 0.18 10.9 0.0 0.32 10.1 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II Zot PF05707.12 gi|145591614|ref|YP_001153616.1| - 0.18 11.4 0.0 0.42 10.2 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Aminotran_1_2 PF00155.21 gi|145591615|ref|YP_001153617.1| - 2.5e-43 148.6 0.0 3.1e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|145591615|ref|YP_001153617.1| - 2.1e-06 26.9 0.0 3.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|145591615|ref|YP_001153617.1| - 2e-05 23.3 0.0 3.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Alliinase_C PF04864.13 gi|145591615|ref|YP_001153617.1| - 0.014 14.2 0.0 0.028 13.3 0.0 1.4 2 0 0 2 2 2 0 Allinase VKOR PF07884.14 gi|145591616|ref|YP_001153618.1| - 4.9e-20 72.0 12.5 6.5e-20 71.6 12.5 1.2 1 0 0 1 1 1 1 Vitamin K epoxide reductase family Sigma_M_inh PF17453.2 gi|145591616|ref|YP_001153618.1| - 0.017 15.5 1.1 0.017 15.5 1.1 1.9 2 1 0 2 2 2 0 Sigma-M inhibitor Potass_KdpF PF09604.10 gi|145591616|ref|YP_001153618.1| - 0.032 14.2 6.9 0.032 14.2 6.9 2.7 2 0 0 2 2 2 0 F subunit of K+-transporting ATPase (Potass_KdpF) DUF4143 PF13635.6 gi|145591618|ref|YP_001153620.1| - 0.0027 17.8 1.1 0.0036 17.4 1.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) NERD PF08378.11 gi|145591618|ref|YP_001153620.1| - 0.067 13.7 0.1 0.067 13.7 0.1 2.8 1 1 1 2 2 2 0 Nuclease-related domain Uso1_p115_C PF04871.13 gi|145591618|ref|YP_001153620.1| - 0.073 13.5 0.7 0.12 12.8 0.7 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region DDRGK PF09756.9 gi|145591618|ref|YP_001153620.1| - 0.13 11.9 8.8 0.19 11.3 8.8 1.2 1 0 0 1 1 1 0 DDRGK domain SHE3 PF17078.5 gi|145591618|ref|YP_001153620.1| - 0.32 10.7 3.6 0.81 9.4 3.7 1.6 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 DUF4530 PF15039.6 gi|145591618|ref|YP_001153620.1| - 0.36 11.0 5.6 0.71 10.0 5.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) ARGLU PF15346.6 gi|145591618|ref|YP_001153620.1| - 0.76 9.6 15.5 0.053 13.4 10.2 1.9 2 0 0 2 2 2 0 Arginine and glutamate-rich 1 Radical_SAM PF04055.21 gi|145591619|ref|YP_001153621.1| - 1.4e-13 51.6 0.0 2e-13 51.1 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily DUF1848 PF08902.11 gi|145591619|ref|YP_001153621.1| - 0.83 9.3 3.7 4.3 7.0 4.3 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Polbeta PF18765.1 gi|145591620|ref|YP_001153622.1| - 1e-10 41.6 0.0 1.5e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF86 PF01934.17 gi|145591620|ref|YP_001153622.1| - 1.3e-05 25.0 0.0 2.6e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF86 PRAI PF00697.22 gi|145591623|ref|YP_001153625.1| - 1.4e-20 73.9 0.0 1.6e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Sec5 PF15469.6 gi|145591624|ref|YP_001153626.1| - 5.3e-06 26.4 8.5 0.00076 19.3 1.7 2.8 2 1 1 3 3 3 2 Exocyst complex component Sec5 RSS_P20 PF11757.8 gi|145591624|ref|YP_001153626.1| - 0.012 16.0 2.3 0.63 10.5 0.3 2.6 1 1 1 2 2 2 0 Suppressor of RNA silencing P21-like N-terminal domain MapZ_EC1 PF18041.1 gi|145591624|ref|YP_001153626.1| - 0.012 15.8 5.7 0.59 10.4 0.0 3.1 2 1 1 3 3 3 0 MapZ extracellular domain 1 DUF885 PF05960.11 gi|145591624|ref|YP_001153626.1| - 0.028 14.1 4.4 0.039 13.6 4.4 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) AbiH PF14253.6 gi|145591624|ref|YP_001153626.1| - 0.049 13.5 0.5 0.08 12.8 0.5 1.4 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Spectrin PF00435.21 gi|145591624|ref|YP_001153626.1| - 0.2 12.1 4.6 9.1 6.8 1.6 2.8 2 1 0 2 2 2 0 Spectrin repeat CSN4_RPN5_eIF3a PF18420.1 gi|145591624|ref|YP_001153626.1| - 0.21 11.8 1.1 3.9 7.7 0.1 3.0 3 0 0 3 3 3 0 CSN4/RPN5/eIF3a helix turn helix domain FliS PF02561.14 gi|145591624|ref|YP_001153626.1| - 0.76 10.1 7.1 4.4 7.6 0.1 3.2 2 2 1 3 3 3 0 Flagellar protein FliS Tau95 PF09734.9 gi|145591624|ref|YP_001153626.1| - 1.3 9.8 3.1 4.2 8.2 3.0 1.9 1 1 0 1 1 1 0 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain FapA PF03961.13 gi|145591624|ref|YP_001153626.1| - 1.9 7.0 8.2 1.1 7.8 5.8 1.7 1 1 0 2 2 2 0 Flagellar Assembly Protein A MitMem_reg PF13012.6 gi|145591624|ref|YP_001153626.1| - 1.9 9.0 4.4 6.3 7.3 0.7 2.4 1 1 1 2 2 2 0 Maintenance of mitochondrial structure and function PCRF PF03462.18 gi|145591624|ref|YP_001153626.1| - 3.4 7.5 7.4 2.2 8.1 3.5 2.1 1 1 1 2 2 2 0 PCRF domain MnmE_helical PF12631.7 gi|145591624|ref|YP_001153626.1| - 6.8 6.8 6.5 90 3.1 6.4 2.5 1 1 0 1 1 1 0 MnmE helical domain CoA_transf_3 PF02515.17 gi|145591625|ref|YP_001153627.1| - 8.4e-44 150.2 0.0 1.4e-43 149.4 0.0 1.3 1 0 0 1 1 1 1 CoA-transferase family III Ferritin PF00210.24 gi|145591625|ref|YP_001153627.1| - 1.1e-37 129.2 1.8 1.5e-37 128.7 1.8 1.2 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|145591625|ref|YP_001153627.1| - 0.00044 20.7 1.0 0.00069 20.0 1.0 1.3 1 0 0 1 1 1 1 Rubrerythrin CARD PF00619.21 gi|145591625|ref|YP_001153627.1| - 0.018 15.1 0.1 0.052 13.6 0.1 1.8 1 0 0 1 1 1 0 Caspase recruitment domain Chalcone PF02431.15 gi|145591625|ref|YP_001153627.1| - 0.018 14.4 0.2 0.037 13.4 0.2 1.4 1 1 0 1 1 1 0 Chalcone-flavanone isomerase DUF1678 PF07913.11 gi|145591625|ref|YP_001153627.1| - 0.11 12.3 0.1 0.82 9.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1678) Lipoprotein_10 PF03202.13 gi|145591625|ref|YP_001153627.1| - 0.13 12.7 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative mycoplasma lipoprotein, C-terminal region PALP PF00291.25 gi|145591626|ref|YP_001153628.1| - 1.2e-46 159.4 0.5 1.5e-46 159.2 0.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Glycos_transf_3 PF00591.21 gi|145591627|ref|YP_001153629.1| - 2.2e-77 260.1 0.7 2.8e-77 259.8 0.7 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|145591627|ref|YP_001153629.1| - 8.8e-15 54.3 0.0 2.4e-14 52.9 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Chorismate_bind PF00425.18 gi|145591628|ref|YP_001153630.1| - 3.4e-93 311.9 0.0 4.1e-93 311.7 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|145591628|ref|YP_001153630.1| - 0.0046 17.2 0.0 0.085 13.1 0.0 2.6 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|145591629|ref|YP_001153631.1| - 3.6e-49 167.1 0.0 4.4e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|145591629|ref|YP_001153631.1| - 5.3e-13 49.2 0.6 4.8e-12 46.1 0.2 2.3 1 1 1 2 2 2 1 Peptidase C26 PLRV_ORF5 PF01690.17 gi|145591629|ref|YP_001153631.1| - 0.23 10.1 0.0 0.29 9.8 0.0 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Trp_syntA PF00290.20 gi|145591630|ref|YP_001153632.1| - 9.9e-20 70.5 0.0 1.3e-17 63.5 0.0 2.0 1 1 0 1 1 1 1 Tryptophan synthase alpha chain NanE PF04131.14 gi|145591630|ref|YP_001153632.1| - 0.00069 18.9 0.0 0.00096 18.4 0.0 1.2 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.21 gi|145591630|ref|YP_001153632.1| - 0.00089 18.5 0.0 0.0019 17.4 0.0 1.5 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase IMPDH PF00478.25 gi|145591630|ref|YP_001153632.1| - 0.024 13.6 0.0 0.033 13.2 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|145591630|ref|YP_001153632.1| - 0.029 13.9 0.0 0.038 13.4 0.0 1.1 1 0 0 1 1 1 0 PcrB family ThiG PF05690.14 gi|145591630|ref|YP_001153632.1| - 0.037 13.3 0.1 0.049 12.9 0.1 1.1 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|145591630|ref|YP_001153632.1| - 0.042 12.9 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 FMN-dependent dehydrogenase CitMHS PF03600.16 gi|145591631|ref|YP_001153633.1| - 6.2e-28 97.9 35.0 6.2e-28 97.9 35.0 1.9 1 1 1 2 2 2 1 Citrate transporter Na_sulph_symp PF00939.19 gi|145591631|ref|YP_001153633.1| - 5.9e-06 25.6 27.0 0.0026 16.9 6.8 3.2 1 1 2 3 3 3 3 Sodium:sulfate symporter transmembrane region Histone_H2A_C PF16211.5 gi|145591631|ref|YP_001153633.1| - 0.15 11.8 0.0 0.38 10.5 0.0 1.6 1 0 0 1 1 1 0 C-terminus of histone H2A TrmO PF01980.16 gi|145591632|ref|YP_001153634.1| - 7.7e-31 106.8 0.0 9.7e-31 106.5 0.0 1.0 1 0 0 1 1 1 1 tRNA-methyltransferase O Ribosomal_S30 PF04758.14 gi|145591633|ref|YP_001153635.1| - 6.3e-11 42.3 2.1 7.4e-11 42.1 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 DUF401 PF04165.12 gi|145591634|ref|YP_001153636.1| - 1.2e-41 143.4 27.9 1.5e-41 143.0 27.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF401) TK PF00265.18 gi|145591635|ref|YP_001153637.1| - 3.8e-47 160.4 0.0 4.2e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Thymidine kinase AAA_14 PF13173.6 gi|145591635|ref|YP_001153637.1| - 0.097 12.7 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain zf-C4_ClpX PF06689.13 gi|145591635|ref|YP_001153637.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 ClpX C4-type zinc finger HTH_10 PF04967.12 gi|145591636|ref|YP_001153638.1| - 3.3e-18 65.2 0.0 5.2e-18 64.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|145591636|ref|YP_001153638.1| - 5e-05 22.7 0.1 8.6e-05 22.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|145591636|ref|YP_001153638.1| - 0.00037 20.3 0.4 0.00037 20.3 0.4 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|145591636|ref|YP_001153638.1| - 0.00054 19.6 0.1 0.0019 17.9 0.1 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|145591636|ref|YP_001153638.1| - 0.00094 19.1 0.0 0.12 12.3 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|145591636|ref|YP_001153638.1| - 0.001 18.6 0.1 0.0037 16.8 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AraC PF00165.23 gi|145591636|ref|YP_001153638.1| - 0.0015 18.6 0.0 0.013 15.6 0.0 2.2 1 1 1 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.7 gi|145591636|ref|YP_001153638.1| - 0.008 16.0 0.2 0.1 12.5 0.1 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|145591636|ref|YP_001153638.1| - 0.017 15.1 0.0 0.17 11.8 0.0 2.4 2 1 0 2 2 2 0 MarR family Glyco_trans_4_4 PF13579.6 gi|145591636|ref|YP_001153638.1| - 0.024 15.1 0.1 0.034 14.6 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain HTH_3 PF01381.22 gi|145591636|ref|YP_001153638.1| - 0.053 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix Phage_rep_O PF04492.13 gi|145591636|ref|YP_001153638.1| - 0.11 13.2 0.0 1.1 9.9 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage replication protein O HTH_5 PF01022.20 gi|145591636|ref|YP_001153638.1| - 0.11 12.4 0.8 3.9 7.4 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family Fer4 PF00037.27 gi|145591637|ref|YP_001153639.1| - 4.4e-11 42.1 13.7 3.2e-09 36.2 4.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|145591637|ref|YP_001153639.1| - 1.7e-10 40.9 5.8 2.6e-10 40.3 5.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145591637|ref|YP_001153639.1| - 7.3e-10 38.8 9.8 9.4e-10 38.5 9.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145591637|ref|YP_001153639.1| - 1.6e-09 37.5 15.7 3.1e-09 36.5 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145591637|ref|YP_001153639.1| - 7.5e-09 35.6 20.7 1e-05 25.6 10.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591637|ref|YP_001153639.1| - 1.2e-08 35.4 10.1 9.8e-08 32.5 10.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591637|ref|YP_001153639.1| - 2.9e-08 34.5 7.4 9e-05 23.3 2.0 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|145591637|ref|YP_001153639.1| - 1.9e-07 30.8 11.5 6.3e-07 29.1 3.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145591637|ref|YP_001153639.1| - 1.2e-06 29.1 10.4 7.9e-05 23.3 10.4 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|145591637|ref|YP_001153639.1| - 2.2e-05 24.6 14.5 7.6e-05 22.9 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145591637|ref|YP_001153639.1| - 0.0007 20.4 17.9 0.014 16.3 6.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145591637|ref|YP_001153639.1| - 0.00074 20.0 13.8 0.032 14.8 13.0 2.5 1 1 1 2 2 2 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_11 PF13247.6 gi|145591637|ref|YP_001153639.1| - 0.0018 18.4 5.0 0.0052 16.9 4.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145591637|ref|YP_001153639.1| - 0.0021 18.5 11.5 0.38 11.2 11.5 2.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591637|ref|YP_001153639.1| - 0.014 16.0 10.3 0.023 15.3 2.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145591637|ref|YP_001153639.1| - 0.021 15.6 3.6 0.19 12.6 0.7 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145591637|ref|YP_001153639.1| - 1.8 8.8 12.8 0.66 10.2 3.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Radical_SAM PF04055.21 gi|145591638|ref|YP_001153640.1| - 4.9e-19 69.3 0.0 1e-18 68.3 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145591638|ref|YP_001153640.1| - 5.9e-07 29.8 0.1 9.3e-07 29.2 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145591638|ref|YP_001153640.1| - 0.0018 18.4 0.3 0.0046 17.1 0.3 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain DUF790 PF05626.11 gi|145591639|ref|YP_001153641.1| - 6.2e-96 321.5 1.8 7e-96 321.3 1.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|145591640|ref|YP_001153642.1| - 3.3e-29 102.1 0.0 1.1e-28 100.4 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|145591640|ref|YP_001153642.1| - 2.5e-18 66.5 0.0 6.8e-18 65.0 0.0 1.8 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|145591640|ref|YP_001153642.1| - 1.9e-14 53.5 0.0 2.8e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|145591640|ref|YP_001153642.1| - 3.3e-14 52.5 0.0 9.3e-14 51.1 0.0 1.8 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|145591640|ref|YP_001153642.1| - 1.4e-13 51.0 0.0 5e-13 49.2 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|145591640|ref|YP_001153642.1| - 0.013 15.7 0.0 0.17 12.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|145591640|ref|YP_001153642.1| - 0.016 14.9 0.0 0.05 13.3 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein OCD_Mu_crystall PF02423.15 gi|145591641|ref|YP_001153643.1| - 1.8e-34 119.1 1.0 4.2e-34 117.9 1.0 1.5 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|145591641|ref|YP_001153643.1| - 8e-06 26.0 0.1 1.4e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|145591641|ref|YP_001153643.1| - 0.007 17.2 0.1 0.015 16.1 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|145591641|ref|YP_001153643.1| - 0.0086 15.5 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|145591641|ref|YP_001153643.1| - 0.023 14.0 0.9 0.034 13.5 0.9 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain CorA PF01544.18 gi|145591642|ref|YP_001153644.1| - 2.8e-16 59.7 0.1 1.3e-15 57.5 0.1 1.8 1 1 0 1 1 1 1 CorA-like Mg2+ transporter protein CPBP PF02517.16 gi|145591643|ref|YP_001153645.1| - 2.1e-10 40.8 4.3 4.4e-10 39.8 4.3 1.7 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Radical_SAM PF04055.21 gi|145591644|ref|YP_001153646.1| - 3.3e-15 56.9 0.0 1.1e-14 55.2 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|145591644|ref|YP_001153646.1| - 0.0074 16.3 0.0 0.057 13.5 0.0 2.3 2 0 0 2 2 2 1 B12 binding domain HMGL-like PF00682.19 gi|145591644|ref|YP_001153646.1| - 0.09 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 HMGL-like SAE2 PF08573.10 gi|145591644|ref|YP_001153646.1| - 0.12 13.5 0.0 0.22 12.6 0.0 1.4 1 0 0 1 1 1 0 DNA repair protein endonuclease SAE2/CtIP C-terminus DHDPS PF00701.22 gi|145591644|ref|YP_001153646.1| - 0.14 10.8 0.0 0.22 10.2 0.0 1.3 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family PsiE PF06146.12 gi|145591645|ref|YP_001153647.1| - 2.4e-10 40.6 5.3 2.4e-10 40.6 5.3 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E PgaD PF13994.6 gi|145591645|ref|YP_001153647.1| - 2.4 8.2 7.6 0.43 10.6 0.5 2.1 1 1 2 3 3 3 0 PgaD-like protein Ribosomal_S24e PF01282.19 gi|145591646|ref|YP_001153648.1| - 4.6e-21 74.5 0.0 8.1e-21 73.8 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S24e MazG-like PF12643.7 gi|145591646|ref|YP_001153648.1| - 0.0019 18.4 0.4 0.023 15.0 0.2 2.2 1 1 1 2 2 2 1 MazG-like family DNase-RNase PF02577.14 gi|145591646|ref|YP_001153648.1| - 0.023 14.3 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Bifunctional nuclease Poxvirus_B22R PF04395.12 gi|145591646|ref|YP_001153648.1| - 0.1 12.1 0.0 0.1 12.1 0.0 1.8 2 0 0 2 2 2 0 Poxvirus B22R protein Ribosomal_S27 PF01599.19 gi|145591647|ref|YP_001153649.1| - 1.8e-10 40.8 0.8 2.1e-10 40.6 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|145591647|ref|YP_001153649.1| - 3.3e-05 23.7 0.5 7.4e-05 22.5 0.5 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|145591647|ref|YP_001153649.1| - 0.00015 21.7 4.6 0.0002 21.2 4.6 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145591647|ref|YP_001153649.1| - 0.00025 20.9 0.3 0.0003 20.7 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|145591647|ref|YP_001153649.1| - 0.00056 19.8 4.2 0.0016 18.3 4.2 1.8 1 1 0 1 1 1 1 Nudix N-terminal zf-NADH-PPase PF09297.11 gi|145591647|ref|YP_001153649.1| - 0.0039 16.8 4.7 0.035 13.8 0.1 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.10 gi|145591647|ref|YP_001153649.1| - 0.0062 16.7 0.9 0.01 16.0 0.9 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) DZR PF12773.7 gi|145591647|ref|YP_001153649.1| - 0.013 15.5 1.6 0.019 14.9 1.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|145591647|ref|YP_001153649.1| - 0.016 14.9 0.4 0.016 14.9 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|145591647|ref|YP_001153649.1| - 0.028 14.8 2.2 0.14 12.5 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37ae PF01780.19 gi|145591647|ref|YP_001153649.1| - 0.035 14.2 0.5 0.045 13.8 0.5 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-ribbon_3 PF13248.6 gi|145591647|ref|YP_001153649.1| - 0.038 13.4 6.0 0.086 12.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PriA_CRR PF18319.1 gi|145591647|ref|YP_001153649.1| - 0.04 13.9 2.5 0.16 12.0 2.5 2.0 1 1 0 1 1 1 0 PriA DNA helicase Cys-rich region (CRR) domain Lar_restr_allev PF14354.6 gi|145591647|ref|YP_001153649.1| - 0.044 14.2 2.1 0.075 13.4 2.1 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF35_N PF12172.8 gi|145591647|ref|YP_001153649.1| - 0.064 13.1 2.6 3.4 7.6 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) A2L_zn_ribbon PF08792.10 gi|145591647|ref|YP_001153649.1| - 0.065 13.0 3.0 1.2 8.9 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|145591647|ref|YP_001153649.1| - 0.078 12.5 1.4 0.54 9.8 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_13 PF09855.9 gi|145591647|ref|YP_001153649.1| - 0.079 13.1 1.1 5.3 7.3 0.2 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_C2H2_10 PF18414.1 gi|145591647|ref|YP_001153649.1| - 0.093 12.3 3.4 4 7.1 0.4 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF1451 PF07295.11 gi|145591647|ref|YP_001153649.1| - 0.13 12.3 0.8 0.18 11.9 0.8 1.2 1 1 0 1 1 1 0 Zinc-ribbon containing domain zf-ISL3 PF14690.6 gi|145591647|ref|YP_001153649.1| - 0.18 12.5 6.3 0.38 11.5 0.5 2.2 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|145591647|ref|YP_001153649.1| - 0.35 11.4 5.2 0.82 10.2 5.2 1.6 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf_UBZ PF18439.1 gi|145591647|ref|YP_001153649.1| - 0.41 10.3 2.6 0.77 9.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|145591647|ref|YP_001153649.1| - 0.43 10.6 0.4 0.43 10.6 0.4 2.2 1 1 1 2 2 2 0 YhfH-like protein HalOD2 PF18547.1 gi|145591647|ref|YP_001153649.1| - 0.47 10.4 4.3 1 9.3 1.1 2.1 1 1 1 2 2 2 0 Halobacterial output domain 2 NOB1_Zn_bind PF08772.11 gi|145591647|ref|YP_001153649.1| - 0.71 10.1 6.3 0.77 10.0 1.1 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like ADK_lid PF05191.14 gi|145591647|ref|YP_001153649.1| - 1.1 9.3 6.2 13 5.9 6.2 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Peptidase_M22 PF00814.25 gi|145591648|ref|YP_001153650.1| - 1.2e-74 251.4 0.3 1.5e-74 251.1 0.3 1.0 1 0 0 1 1 1 1 Glycoprotease family Radical_SAM PF04055.21 gi|145591651|ref|YP_001153653.1| - 3e-24 86.3 0.0 2.1e-23 83.5 0.0 2.2 2 1 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|145591651|ref|YP_001153653.1| - 1.3e-07 31.7 0.2 3.1e-07 30.5 0.0 1.7 2 0 0 2 2 2 1 B12 binding domain T2SSK PF03934.13 gi|145591651|ref|YP_001153653.1| - 0.16 11.4 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K PPDK_N PF01326.19 gi|145591653|ref|YP_001153655.1| - 5.3e-110 367.8 0.0 1.1e-109 366.7 0.0 1.5 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|145591653|ref|YP_001153655.1| - 1.2e-76 257.7 0.0 1.8e-76 257.1 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|145591653|ref|YP_001153655.1| - 1.7e-27 94.9 0.5 4.6e-27 93.5 0.5 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Radical_SAM PF04055.21 gi|145591653|ref|YP_001153655.1| - 0.11 12.9 0.1 4 7.8 0.0 3.5 3 1 1 4 4 4 0 Radical SAM superfamily MS_channel PF00924.18 gi|145591654|ref|YP_001153656.1| - 1.5e-11 44.2 0.0 2.6e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Mechanosensitive ion channel TctA PF01970.16 gi|145591654|ref|YP_001153656.1| - 0.72 8.5 9.0 1.4 7.5 8.9 1.4 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family TrkA_C PF02080.21 gi|145591655|ref|YP_001153657.1| - 6.5e-10 38.7 0.3 5.7e-09 35.7 0.3 2.5 2 0 0 2 2 2 1 TrkA-C domain TrkA_N PF02254.18 gi|145591655|ref|YP_001153657.1| - 1.6e-06 28.4 1.0 1.6e-06 28.4 1.0 1.7 2 0 0 2 2 2 1 TrkA-N domain SIS PF01380.22 gi|145591655|ref|YP_001153657.1| - 0.0021 17.9 0.4 0.28 11.0 0.1 2.4 2 1 0 2 2 2 1 SIS domain Glyco_trans_4_2 PF13477.6 gi|145591655|ref|YP_001153657.1| - 0.0029 17.6 0.1 0.45 10.5 0.1 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.6 gi|145591655|ref|YP_001153657.1| - 0.0047 16.9 0.0 3.2 7.7 0.0 2.2 2 0 0 2 2 2 2 Glycosyltransferase Family 4 NAD_binding_7 PF13241.6 gi|145591655|ref|YP_001153657.1| - 0.0083 16.6 0.2 0.024 15.1 0.1 1.8 1 1 1 2 2 2 1 Putative NAD(P)-binding CoA_binding_2 PF13380.6 gi|145591655|ref|YP_001153657.1| - 0.019 15.4 0.2 0.034 14.6 0.2 1.4 1 0 0 1 1 1 0 CoA binding domain PLDc_2 PF13091.6 gi|145591655|ref|YP_001153657.1| - 0.024 14.5 0.2 0.67 9.9 0.2 2.3 1 1 0 1 1 1 0 PLD-like domain AAA_31 PF13614.6 gi|145591659|ref|YP_001153661.1| - 0.00032 20.7 0.1 0.0045 16.9 0.1 2.3 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|145591659|ref|YP_001153661.1| - 0.0011 19.1 0.0 0.0014 18.7 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|145591659|ref|YP_001153661.1| - 0.0027 17.2 0.0 0.0039 16.7 0.0 1.3 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|145591659|ref|YP_001153661.1| - 0.026 13.7 0.9 0.047 12.9 0.3 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase ParA PF10609.9 gi|145591659|ref|YP_001153661.1| - 0.027 13.9 0.1 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase T2SSE PF00437.20 gi|145591660|ref|YP_001153662.1| - 0.0001 21.5 0.0 0.00019 20.6 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_28 PF13521.6 gi|145591660|ref|YP_001153662.1| - 0.00055 20.2 0.0 0.0011 19.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|145591660|ref|YP_001153662.1| - 0.016 14.8 0.0 0.026 14.0 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Birna_VP2 PF01766.17 gi|145591660|ref|YP_001153662.1| - 0.09 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Birnavirus VP2 protein AAA_16 PF13191.6 gi|145591660|ref|YP_001153662.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|145591660|ref|YP_001153662.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain cobW PF02492.19 gi|145591660|ref|YP_001153662.1| - 0.19 11.3 0.0 0.34 10.5 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|145591660|ref|YP_001153662.1| - 0.21 11.9 0.0 0.51 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain HTH_AsnC-type PF13404.6 gi|145591663|ref|YP_001153665.1| - 0.09 12.6 0.3 0.44 10.4 0.3 2.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PSCyt2 PF07583.11 gi|145591663|ref|YP_001153665.1| - 0.097 12.6 1.1 1.3 9.0 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1549) HGD-D PF06050.13 gi|145591663|ref|YP_001153665.1| - 0.18 11.5 0.3 0.73 9.5 0.1 2.0 2 0 0 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component TrwB_AAD_bind PF10412.9 gi|145591674|ref|YP_001153676.1| - 1.5e-05 24.1 0.0 0.11 11.4 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF87 PF01935.17 gi|145591674|ref|YP_001153676.1| - 0.00019 21.6 0.0 0.00041 20.5 0.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain PhoH PF02562.16 gi|145591674|ref|YP_001153676.1| - 0.022 14.2 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_22 PF13401.6 gi|145591674|ref|YP_001153676.1| - 0.04 14.2 0.0 1.8 8.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|145591674|ref|YP_001153676.1| - 0.044 13.1 0.0 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 FtsK/SpoIIIE family CbiA PF01656.23 gi|145591674|ref|YP_001153676.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.7 gi|145591674|ref|YP_001153676.1| - 0.13 11.1 0.0 0.25 10.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain HTH_29 PF13551.6 gi|145591676|ref|YP_001153678.1| - 0.00061 19.8 0.1 0.21 11.6 0.0 2.6 2 1 0 2 2 2 2 Winged helix-turn helix IF2_N PF04760.15 gi|145591676|ref|YP_001153678.1| - 0.0078 16.0 0.1 0.11 12.4 0.1 2.2 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_28 PF13518.6 gi|145591676|ref|YP_001153678.1| - 0.024 14.7 0.5 2.5 8.3 0.1 2.8 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|145591676|ref|YP_001153678.1| - 0.031 14.1 0.1 0.45 10.4 0.0 2.6 3 0 0 3 3 3 0 HTH DNA binding domain DUF1957 PF09210.11 gi|145591676|ref|YP_001153678.1| - 0.14 12.6 0.3 0.22 11.9 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1957) DUF1294 PF06961.13 gi|145591677|ref|YP_001153679.1| - 0.29 11.4 2.0 2.5 8.4 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1294) CENP-F_leu_zip PF10473.9 gi|145591679|ref|YP_001153681.1| - 3.5e-05 23.8 15.4 0.015 15.3 3.7 2.1 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|145591679|ref|YP_001153681.1| - 4.3e-05 23.8 16.9 4.3e-05 23.8 16.9 2.0 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|145591679|ref|YP_001153681.1| - 0.00042 19.3 15.3 0.00058 18.8 15.3 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein GAS PF13851.6 gi|145591679|ref|YP_001153681.1| - 0.00044 19.7 16.5 0.0059 16.0 16.6 1.9 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|145591679|ref|YP_001153681.1| - 0.0006 19.7 6.6 0.0006 19.7 6.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF724) Fez1 PF06818.15 gi|145591679|ref|YP_001153681.1| - 0.00099 19.6 11.7 0.0014 19.1 11.7 1.1 1 0 0 1 1 1 1 Fez1 HAUS-augmin3 PF14932.6 gi|145591679|ref|YP_001153681.1| - 0.0016 18.1 16.8 0.0023 17.6 16.8 1.1 1 0 0 1 1 1 1 HAUS augmin-like complex subunit 3 CEP63 PF17045.5 gi|145591679|ref|YP_001153681.1| - 0.0026 17.7 9.4 0.0026 17.7 9.4 1.8 1 1 1 2 2 2 1 Centrosomal protein of 63 kDa Filament PF00038.21 gi|145591679|ref|YP_001153681.1| - 0.0037 16.9 11.1 0.31 10.6 0.3 2.2 1 1 1 2 2 2 2 Intermediate filament protein EzrA PF06160.12 gi|145591679|ref|YP_001153681.1| - 0.0042 15.3 7.7 0.0058 14.9 7.7 1.1 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Golgin_A5 PF09787.9 gi|145591679|ref|YP_001153681.1| - 0.0058 16.1 10.1 0.0077 15.7 10.1 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 Bap31_Bap29_C PF18035.1 gi|145591679|ref|YP_001153681.1| - 0.0061 16.5 1.4 0.0061 16.5 1.4 2.8 2 1 1 3 3 2 1 Bap31/Bap29 cytoplasmic coiled-coil domain TPR_MLP1_2 PF07926.12 gi|145591679|ref|YP_001153681.1| - 0.0063 16.6 24.7 0.38 10.8 8.0 2.1 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein CASP_C PF08172.12 gi|145591679|ref|YP_001153681.1| - 0.0066 15.8 1.8 0.0066 15.8 1.8 1.9 1 1 1 2 2 2 1 CASP C terminal FUSC PF04632.12 gi|145591679|ref|YP_001153681.1| - 0.0079 14.8 9.9 0.011 14.3 9.9 1.1 1 0 0 1 1 1 1 Fusaric acid resistance protein family SPATA24 PF15175.6 gi|145591679|ref|YP_001153681.1| - 0.0083 16.0 7.0 0.0085 16.0 5.8 1.6 1 1 0 1 1 1 1 Spermatogenesis-associated protein 24 Tropomyosin_1 PF12718.7 gi|145591679|ref|YP_001153681.1| - 0.012 15.7 9.9 0.012 15.7 9.9 2.1 1 1 1 2 2 2 0 Tropomyosin like TMF_DNA_bd PF12329.8 gi|145591679|ref|YP_001153681.1| - 0.017 15.1 9.0 0.017 15.1 9.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding BLOC1_2 PF10046.9 gi|145591679|ref|YP_001153681.1| - 0.018 15.3 2.1 0.018 15.3 2.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ERM PF00769.19 gi|145591679|ref|YP_001153681.1| - 0.026 14.3 15.3 0.043 13.6 15.3 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family zf-C4H2 PF10146.9 gi|145591679|ref|YP_001153681.1| - 0.053 13.8 4.2 0.07 13.4 4.2 1.1 1 0 0 1 1 1 0 Zinc finger-containing protein GBR2_CC PF18455.1 gi|145591679|ref|YP_001153681.1| - 0.057 13.6 0.1 0.14 12.3 0.1 1.6 1 0 0 1 1 1 0 Gamma-aminobutyric acid type B receptor subunit 2 coiled-coil domain DUF4686 PF15742.5 gi|145591679|ref|YP_001153681.1| - 0.062 12.4 15.0 0.025 13.7 12.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4686) AAA_13 PF13166.6 gi|145591679|ref|YP_001153681.1| - 0.07 11.8 7.4 0.11 11.1 7.4 1.3 1 0 0 1 1 1 0 AAA domain BRE1 PF08647.11 gi|145591679|ref|YP_001153681.1| - 0.077 13.1 15.2 0.035 14.2 12.5 1.7 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase Cas_DxTHG PF09455.10 gi|145591679|ref|YP_001153681.1| - 0.09 12.4 0.5 4 6.9 0.2 2.1 2 0 0 2 2 2 0 CRISPR-associated (Cas) DxTHG family FlaC_arch PF05377.11 gi|145591679|ref|YP_001153681.1| - 0.094 13.1 4.4 63 4.1 1.0 3.9 1 1 3 4 4 3 0 Flagella accessory protein C (FlaC) FH2 PF02181.23 gi|145591679|ref|YP_001153681.1| - 0.11 11.6 7.8 0.073 12.2 5.6 1.6 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF1664 PF07889.12 gi|145591679|ref|YP_001153681.1| - 0.11 12.6 5.5 1.9 8.6 0.2 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2009 PF09418.10 gi|145591679|ref|YP_001153681.1| - 0.11 11.5 2.0 0.15 11.1 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2009) DUF812 PF05667.11 gi|145591679|ref|YP_001153681.1| - 0.12 11.3 13.2 0.17 10.7 13.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) FPP PF05911.11 gi|145591679|ref|YP_001153681.1| - 0.13 10.4 10.7 0.17 10.0 10.7 1.1 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil TMF_TATA_bd PF12325.8 gi|145591679|ref|YP_001153681.1| - 0.14 12.4 14.7 0.83 9.9 2.1 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding PGF-CTERM PF18204.1 gi|145591679|ref|YP_001153681.1| - 0.15 12.1 3.6 0.35 10.9 3.6 1.7 1 0 0 1 1 1 0 PGF-CTERM motif APG6_N PF17675.1 gi|145591679|ref|YP_001153681.1| - 0.15 12.6 21.5 0.23 12.0 18.8 2.1 1 1 0 1 1 1 0 Apg6 coiled-coil region DUF5082 PF16888.5 gi|145591679|ref|YP_001153681.1| - 0.16 12.2 7.7 0.3 11.4 7.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) DUF641 PF04859.12 gi|145591679|ref|YP_001153681.1| - 0.17 12.2 10.1 0.15 12.4 8.9 1.5 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) ADIP PF11559.8 gi|145591679|ref|YP_001153681.1| - 0.17 12.0 18.3 0.29 11.2 9.3 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding SKA1 PF07160.12 gi|145591679|ref|YP_001153681.1| - 0.19 11.6 6.8 0.26 11.1 6.8 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 PI3K_P85_iSH2 PF16454.5 gi|145591679|ref|YP_001153681.1| - 0.19 11.3 8.2 0.17 11.4 6.4 1.8 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain HAP1_N PF04849.13 gi|145591679|ref|YP_001153681.1| - 0.2 10.8 12.9 0.28 10.3 12.9 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Prominin PF05478.11 gi|145591679|ref|YP_001153681.1| - 0.2 9.5 3.1 0.26 9.2 3.1 1.1 1 0 0 1 1 1 0 Prominin TssO PF17561.2 gi|145591679|ref|YP_001153681.1| - 0.22 11.7 1.5 0.94 9.6 0.1 2.4 1 1 2 3 3 3 0 Type VI secretion system, TssO DUF4795 PF16043.5 gi|145591679|ref|YP_001153681.1| - 0.22 11.1 9.2 0.5 10.0 9.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) PKcGMP_CC PF16808.5 gi|145591679|ref|YP_001153681.1| - 0.22 11.4 1.6 3.7 7.5 1.4 2.5 1 1 1 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Phage_GP20 PF06810.11 gi|145591679|ref|YP_001153681.1| - 0.23 11.3 12.6 3.6 7.4 7.5 2.9 1 1 1 2 2 2 0 Phage minor structural protein GP20 Troponin PF00992.20 gi|145591679|ref|YP_001153681.1| - 0.23 11.8 11.1 0.054 13.8 3.4 2.1 1 1 1 2 2 2 0 Troponin Atg14 PF10186.9 gi|145591679|ref|YP_001153681.1| - 0.23 10.5 13.6 0.33 10.0 13.6 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Sld5 PF05916.11 gi|145591679|ref|YP_001153681.1| - 0.29 11.6 2.6 1 9.8 2.6 2.0 1 1 0 1 1 1 0 GINS complex protein CENP-H PF05837.12 gi|145591679|ref|YP_001153681.1| - 0.32 11.4 17.6 0.043 14.2 9.6 2.2 1 1 1 2 2 2 0 Centromere protein H (CENP-H) Seryl_tRNA_N PF02403.22 gi|145591679|ref|YP_001153681.1| - 0.33 11.2 15.2 1.9 8.7 9.1 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain HAUS6_N PF14661.6 gi|145591679|ref|YP_001153681.1| - 0.36 10.4 7.2 0.57 9.7 7.2 1.3 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus FapA PF03961.13 gi|145591679|ref|YP_001153681.1| - 0.39 9.3 5.5 0.61 8.6 5.5 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A YabA PF06156.13 gi|145591679|ref|YP_001153681.1| - 0.4 11.3 10.0 69 4.2 10.0 2.4 1 1 0 1 1 1 0 Initiation control protein YabA DUF3584 PF12128.8 gi|145591679|ref|YP_001153681.1| - 0.43 8.0 17.5 0.56 7.6 17.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) HMMR_N PF15905.5 gi|145591679|ref|YP_001153681.1| - 0.43 10.0 15.4 1.1 8.7 15.2 1.5 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal Striatin PF08232.12 gi|145591679|ref|YP_001153681.1| - 0.46 11.1 8.6 0.73 10.4 8.6 1.3 1 0 0 1 1 1 0 Striatin family Rootletin PF15035.6 gi|145591679|ref|YP_001153681.1| - 0.54 10.3 14.8 2.3 8.2 14.8 1.7 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Syntaxin-6_N PF09177.11 gi|145591679|ref|YP_001153681.1| - 0.68 10.5 6.9 7.8 7.1 6.9 2.3 1 1 0 1 1 1 0 Syntaxin 6, N-terminal CEP209_CC5 PF16574.5 gi|145591679|ref|YP_001153681.1| - 0.72 10.0 9.5 1.1 9.5 9.5 1.3 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 Sec34 PF04136.15 gi|145591679|ref|YP_001153681.1| - 0.75 9.7 9.2 0.53 10.2 1.9 2.1 1 1 1 2 2 2 0 Sec34-like family LPP PF04728.13 gi|145591679|ref|YP_001153681.1| - 0.85 10.1 16.3 0.68 10.4 4.3 3.4 2 1 1 3 3 3 0 Lipoprotein leucine-zipper SHE3 PF17078.5 gi|145591679|ref|YP_001153681.1| - 0.87 9.2 9.3 1.8 8.2 9.3 1.4 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 TRAF_BIRC3_bd PF16673.5 gi|145591679|ref|YP_001153681.1| - 0.89 9.4 8.6 5.2 6.9 1.6 2.6 1 1 1 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Fmp27_WPPW PF10359.9 gi|145591679|ref|YP_001153681.1| - 0.95 8.2 4.0 1.4 7.7 4.0 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DivIC PF04977.15 gi|145591679|ref|YP_001153681.1| - 0.96 9.3 20.9 1 9.2 6.1 3.4 1 1 0 2 2 2 0 Septum formation initiator CENP-F_N PF10481.9 gi|145591679|ref|YP_001153681.1| - 0.98 9.0 12.2 0.29 10.7 8.6 1.7 1 1 1 2 2 2 0 Cenp-F N-terminal domain HIP1_clath_bdg PF16515.5 gi|145591679|ref|YP_001153681.1| - 1 10.0 17.5 3.6 8.3 17.0 2.0 1 1 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF3209 PF11483.8 gi|145591679|ref|YP_001153681.1| - 1 9.9 5.0 0.76 10.2 3.2 1.6 1 1 1 2 2 1 0 Protein of unknown function (DUF3209) FAM76 PF16046.5 gi|145591679|ref|YP_001153681.1| - 1.1 8.6 10.1 3.4 7.0 10.1 1.7 1 1 0 1 1 1 0 FAM76 protein Uso1_p115_C PF04871.13 gi|145591679|ref|YP_001153681.1| - 1.2 9.5 21.9 4.9e+02 1.1 21.9 2.2 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region CENP-Q PF13094.6 gi|145591679|ref|YP_001153681.1| - 1.3 9.1 16.4 3.3 7.9 16.2 1.5 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit CorA PF01544.18 gi|145591679|ref|YP_001153681.1| - 1.5 8.1 4.4 2.3 7.4 4.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.19 gi|145591679|ref|YP_001153681.1| - 1.5 6.6 5.2 2 6.2 5.2 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Occludin_ELL PF07303.13 gi|145591679|ref|YP_001153681.1| - 1.7 9.4 4.2 3.2 8.5 0.9 2.2 1 1 1 2 2 2 0 Occludin homology domain T3SSipB PF16535.5 gi|145591679|ref|YP_001153681.1| - 1.9 9.0 16.6 3 8.3 16.6 1.2 1 0 0 1 1 1 0 Type III cell invasion protein SipB JIP_LZII PF16471.5 gi|145591679|ref|YP_001153681.1| - 2.2 8.5 11.6 1.1 9.5 4.0 2.7 1 1 2 3 3 3 0 JNK-interacting protein leucine zipper II DUF4407 PF14362.6 gi|145591679|ref|YP_001153681.1| - 2.4 7.4 16.4 6.8 6.0 16.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|145591679|ref|YP_001153681.1| - 2.7 8.2 8.1 11 6.2 8.2 1.9 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family BCAS2 PF05700.11 gi|145591679|ref|YP_001153681.1| - 2.8 7.6 16.4 0.65 9.7 1.2 2.1 1 1 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) Spc24 PF08286.11 gi|145591679|ref|YP_001153681.1| - 3.4 8.0 14.8 1.8 8.8 5.1 2.5 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Jnk-SapK_ap_N PF09744.9 gi|145591679|ref|YP_001153681.1| - 3.9 7.7 15.9 5.9 7.1 5.5 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 NPV_P10 PF05531.12 gi|145591679|ref|YP_001153681.1| - 4.5 7.8 9.4 19 5.8 4.2 2.9 1 1 2 3 3 3 0 Nucleopolyhedrovirus P10 protein Muted PF14942.6 gi|145591679|ref|YP_001153681.1| - 5.2 7.4 10.2 30 4.9 10.1 1.9 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Prefoldin PF02996.17 gi|145591679|ref|YP_001153681.1| - 5.6 6.9 13.1 0.86 9.5 2.8 2.9 1 1 2 3 3 3 0 Prefoldin subunit OmpH PF03938.14 gi|145591679|ref|YP_001153681.1| - 5.7 7.3 21.1 27 5.1 21.0 2.0 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF3450 PF11932.8 gi|145591679|ref|YP_001153681.1| - 6.2 6.0 19.5 47 3.2 19.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4200 PF13863.6 gi|145591679|ref|YP_001153681.1| - 6.2 7.2 17.4 13 6.2 12.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) CCDC53 PF10152.9 gi|145591679|ref|YP_001153681.1| - 6.3 7.2 6.4 9.3 6.6 6.4 1.2 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex Mod_r PF07200.13 gi|145591679|ref|YP_001153681.1| - 6.6 6.8 16.8 8.5 6.5 5.1 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF16 PF01519.16 gi|145591679|ref|YP_001153681.1| - 7.7 7.1 9.6 1.8 9.1 4.3 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 COG2 PF06148.11 gi|145591679|ref|YP_001153681.1| - 7.8 6.6 9.4 15 5.7 2.1 2.3 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 THOC7 PF05615.13 gi|145591679|ref|YP_001153681.1| - 8.5 6.7 16.1 11 6.3 14.2 2.0 1 1 1 2 2 2 0 Tho complex subunit 7 ZapB PF06005.12 gi|145591679|ref|YP_001153681.1| - 9.1 6.8 22.7 9.5 6.7 8.3 2.4 1 1 1 2 2 2 0 Cell division protein ZapB DUF4763 PF15960.5 gi|145591679|ref|YP_001153681.1| - 9.6 5.4 12.6 8.8 5.5 3.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) RHH_1 PF01402.21 gi|145591680|ref|YP_001153682.1| - 1.6e-05 24.7 2.5 2.8e-05 23.9 2.5 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ScsC_N PF18312.1 gi|145591680|ref|YP_001153682.1| - 0.055 13.3 1.2 0.19 11.5 0.1 2.0 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain Gln-synt_C-ter PF18318.1 gi|145591682|ref|YP_001153684.1| - 0.27 11.1 0.0 0.41 10.5 0.0 1.2 1 0 0 1 1 1 0 Glutamine synthetase C-terminal domain DUF2650 PF10853.8 gi|145591687|ref|YP_001153689.1| - 0.069 12.9 0.4 0.069 12.9 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2650) Arginase PF00491.21 gi|145591688|ref|YP_001153690.1| - 6.8e-63 212.8 0.0 8.1e-63 212.5 0.0 1.0 1 0 0 1 1 1 1 Arginase family Lyase_aromatic PF00221.19 gi|145591689|ref|YP_001153691.1| - 2.3e-132 442.0 0.0 2.8e-132 441.7 0.0 1.0 1 0 0 1 1 1 1 Aromatic amino acid lyase Peptidase_S8 PF00082.22 gi|145591689|ref|YP_001153691.1| - 0.087 12.1 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Subtilase family Amidohydro_3 PF07969.11 gi|145591690|ref|YP_001153692.1| - 1.1e-18 68.0 0.1 3.2e-14 53.2 0.0 2.3 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_1 PF01979.20 gi|145591690|ref|YP_001153692.1| - 1.2e-14 54.4 0.0 9.5e-14 51.5 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family CM_2 PF01817.21 gi|145591690|ref|YP_001153692.1| - 0.055 13.8 0.0 0.17 12.3 0.0 1.9 1 0 0 1 1 1 0 Chorismate mutase type II Urocanase_C PF17392.2 gi|145591691|ref|YP_001153693.1| - 4.2e-82 274.3 0.0 7.7e-82 273.5 0.0 1.4 1 0 0 1 1 1 1 Urocanase C-terminal domain Urocanase PF01175.18 gi|145591691|ref|YP_001153693.1| - 2.5e-79 265.8 0.0 3.4e-79 265.4 0.0 1.2 1 0 0 1 1 1 1 Urocanase Rossmann-like domain Urocanase_N PF17391.2 gi|145591691|ref|YP_001153693.1| - 1.7e-45 153.8 0.1 8.1e-45 151.6 0.0 2.1 2 0 0 2 2 2 1 Urocanase N-terminal domain Cys_Met_Meta_PP PF01053.20 gi|145591692|ref|YP_001153694.1| - 1e-117 393.0 0.0 1.1e-117 392.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|145591692|ref|YP_001153694.1| - 0.0038 16.2 0.0 0.0049 15.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|145591692|ref|YP_001153694.1| - 0.2 10.4 0.0 0.3 9.9 0.0 1.2 1 0 0 1 1 1 0 Glycine cleavage system P-protein Cob_adeno_trans PF01923.18 gi|145591694|ref|YP_001153696.1| - 2.1e-13 50.8 0.0 2.9e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Cobalamin adenosyltransferase CBS PF00571.28 gi|145591695|ref|YP_001153697.1| - 2.3e-24 85.6 3.7 2e-13 50.5 0.3 2.1 2 0 0 2 2 2 2 CBS domain HTH_21 PF13276.6 gi|145591695|ref|YP_001153697.1| - 0.021 14.9 1.1 0.13 12.4 0.3 2.5 2 0 0 2 2 2 0 HTH-like domain Usp PF00582.26 gi|145591696|ref|YP_001153698.1| - 6.2e-36 124.0 1.1 6.9e-36 123.9 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MFS_1 PF07690.16 gi|145591697|ref|YP_001153699.1| - 3.4e-33 115.0 49.1 9.2e-19 67.6 19.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|145591697|ref|YP_001153699.1| - 1.6e-07 30.2 30.1 2.1e-07 29.8 30.1 1.1 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_1_like PF12832.7 gi|145591697|ref|YP_001153699.1| - 4.2e-07 29.2 21.7 1.8e-05 23.8 21.7 2.1 1 1 0 1 1 1 1 MFS_1 like family Sec61_beta PF03911.16 gi|145591699|ref|YP_001153701.1| - 2.7e-09 36.9 0.7 3.1e-09 36.7 0.7 1.1 1 0 0 1 1 1 1 Sec61beta family SBP_bac_5 PF00496.22 gi|145591700|ref|YP_001153702.1| - 4.7e-96 322.0 0.4 6.7e-96 321.5 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.22 gi|145591701|ref|YP_001153703.1| - 7.6e-25 87.7 10.6 7.6e-25 87.7 10.6 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|145591701|ref|YP_001153703.1| - 4.9e-05 23.2 0.6 4.9e-05 23.2 0.6 4.7 5 0 0 5 5 5 2 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|145591702|ref|YP_001153704.1| - 2e-38 132.0 14.5 2e-38 132.0 14.5 2.1 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component tRNA-synt_1 PF00133.22 gi|145591703|ref|YP_001153705.1| - 7.4e-102 341.5 0.0 1.2e-100 337.6 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|145591703|ref|YP_001153705.1| - 1e-29 103.4 1.4 1.9e-29 102.6 1.4 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|145591703|ref|YP_001153705.1| - 3.2e-22 78.8 0.0 2e-13 49.9 0.0 3.3 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|145591703|ref|YP_001153705.1| - 0.00023 20.8 0.1 0.034 13.7 0.0 2.9 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 ESX-1_EspG PF14011.6 gi|145591703|ref|YP_001153705.1| - 0.033 13.8 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 EspG family tRNA-synt_1e PF01406.19 gi|145591703|ref|YP_001153705.1| - 0.045 13.1 0.0 3.3 7.0 0.0 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain Thi4 PF01946.17 gi|145591704|ref|YP_001153706.1| - 1.1e-72 244.1 0.0 1.6e-72 243.6 0.0 1.2 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|145591704|ref|YP_001153706.1| - 2e-13 50.7 0.3 9e-08 32.1 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|145591704|ref|YP_001153706.1| - 6.5e-10 39.1 0.2 1.8e-09 37.7 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|145591704|ref|YP_001153706.1| - 2.1e-07 30.4 0.9 5.5e-06 25.7 0.1 2.7 2 1 0 3 3 3 1 FAD binding domain FAD_binding_3 PF01494.19 gi|145591704|ref|YP_001153706.1| - 2.8e-07 30.1 0.0 4.2e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|145591704|ref|YP_001153706.1| - 8.6e-07 28.5 0.1 1.2e-06 28.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|145591704|ref|YP_001153706.1| - 8.1e-06 25.4 0.2 1.3e-05 24.8 0.2 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|145591704|ref|YP_001153706.1| - 1.5e-05 23.9 0.2 2.2e-05 23.4 0.2 1.2 1 0 0 1 1 1 1 HI0933-like protein Amino_oxidase PF01593.24 gi|145591704|ref|YP_001153706.1| - 5e-05 22.8 0.0 7.2e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|145591704|ref|YP_001153706.1| - 0.0013 19.2 0.2 0.0048 17.4 0.2 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|145591704|ref|YP_001153706.1| - 0.0024 17.9 0.9 0.0031 17.5 0.2 1.5 2 0 0 2 2 1 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|145591704|ref|YP_001153706.1| - 0.0029 16.9 0.0 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|145591704|ref|YP_001153706.1| - 0.0051 15.9 0.1 0.0082 15.3 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|145591704|ref|YP_001153706.1| - 0.014 15.5 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Trp_halogenase PF04820.14 gi|145591704|ref|YP_001153706.1| - 0.027 13.3 0.0 0.053 12.4 0.0 1.4 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|145591704|ref|YP_001153706.1| - 0.042 12.9 0.1 0.1 11.6 0.0 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|145591704|ref|YP_001153706.1| - 0.063 12.4 0.0 0.089 11.9 0.0 1.1 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.19 gi|145591704|ref|YP_001153706.1| - 0.083 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|145591704|ref|YP_001153706.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Arc_trans_TRASH PF08394.10 gi|145591705|ref|YP_001153707.1| - 1.2e-05 25.5 4.8 1.8e-05 25.0 4.8 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|145591705|ref|YP_001153707.1| - 0.026 14.5 9.3 0.076 13.0 9.3 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF3388 PF11868.8 gi|145591705|ref|YP_001153707.1| - 0.12 11.7 0.0 0.12 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) zf-C6H2 PF15801.5 gi|145591705|ref|YP_001153707.1| - 1.3 9.4 9.4 18 5.7 9.9 2.0 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding Pyridoxal_deC PF00282.19 gi|145591706|ref|YP_001153708.1| - 1.3e-24 86.6 0.0 2.5e-24 85.7 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|145591706|ref|YP_001153708.1| - 3.2e-11 42.8 0.0 5.7e-11 42.0 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|145591706|ref|YP_001153708.1| - 8.3e-10 38.4 0.0 4.8e-09 35.8 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|145591706|ref|YP_001153708.1| - 1.6e-07 31.0 0.6 4e-07 29.7 0.6 1.5 1 1 1 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|145591706|ref|YP_001153708.1| - 0.006 15.2 0.0 0.021 13.3 0.0 1.7 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme ABC_tran PF00005.27 gi|145591707|ref|YP_001153709.1| - 1.2e-29 103.5 0.0 1.6e-29 103.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591707|ref|YP_001153709.1| - 3.4e-14 53.4 0.4 3.8e-07 30.2 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591707|ref|YP_001153709.1| - 1.2e-09 37.9 0.1 2.3e-08 33.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591707|ref|YP_001153709.1| - 5.7e-06 27.0 0.1 1.1e-05 26.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145591707|ref|YP_001153709.1| - 3e-05 23.7 0.1 6.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|145591707|ref|YP_001153709.1| - 3.9e-05 24.1 0.0 5.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|145591707|ref|YP_001153709.1| - 5e-05 23.2 0.0 0.00029 20.7 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|145591707|ref|YP_001153709.1| - 0.0006 19.6 0.4 0.00084 19.1 0.3 1.6 1 1 0 1 1 1 1 AAA domain AAA_27 PF13514.6 gi|145591707|ref|YP_001153709.1| - 0.0021 17.7 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|145591707|ref|YP_001153709.1| - 0.0039 16.1 0.5 0.011 14.5 0.3 1.7 2 0 0 2 2 2 1 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|145591707|ref|YP_001153709.1| - 0.0046 16.9 0.2 0.033 14.1 0.1 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|145591707|ref|YP_001153709.1| - 0.0049 17.1 0.2 0.0094 16.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|145591707|ref|YP_001153709.1| - 0.0065 16.4 0.1 0.034 14.1 0.0 1.9 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|145591707|ref|YP_001153709.1| - 0.0069 16.4 0.0 0.06 13.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|145591707|ref|YP_001153709.1| - 0.02 14.7 0.2 0.042 13.6 0.2 1.7 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA PF00004.29 gi|145591707|ref|YP_001153709.1| - 0.025 15.0 0.0 0.039 14.4 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|145591707|ref|YP_001153709.1| - 0.027 14.6 0.3 0.093 12.9 0.3 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145591707|ref|YP_001153709.1| - 0.028 14.3 0.2 0.047 13.6 0.2 1.3 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|145591707|ref|YP_001153709.1| - 0.039 13.9 0.0 0.083 12.8 0.0 1.5 2 0 0 2 2 2 0 NTPase Dynamin_N PF00350.23 gi|145591707|ref|YP_001153709.1| - 0.064 13.3 0.2 0.11 12.6 0.2 1.3 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.23 gi|145591707|ref|YP_001153709.1| - 0.067 13.3 0.6 0.15 12.1 0.6 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase IstB_IS21 PF01695.17 gi|145591707|ref|YP_001153709.1| - 0.11 12.2 0.1 0.27 11.0 0.1 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein cobW PF02492.19 gi|145591707|ref|YP_001153709.1| - 0.12 12.0 0.3 0.19 11.3 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|145591707|ref|YP_001153709.1| - 0.14 12.4 0.0 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|145591707|ref|YP_001153709.1| - 0.15 11.2 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|145591707|ref|YP_001153709.1| - 0.17 10.9 0.3 0.35 9.9 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA_helicase PF00910.22 gi|145591707|ref|YP_001153709.1| - 0.2 12.1 0.0 0.44 11.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|145591708|ref|YP_001153710.1| - 5.8e-28 98.1 0.0 7.3e-28 97.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591708|ref|YP_001153710.1| - 2.3e-12 47.4 0.2 5.9e-05 23.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145591708|ref|YP_001153710.1| - 1e-06 28.4 0.4 1.9e-06 27.5 0.4 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|145591708|ref|YP_001153710.1| - 5.7e-06 27.0 0.2 7.4e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|145591708|ref|YP_001153710.1| - 1.9e-05 24.6 0.1 0.023 14.4 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|145591708|ref|YP_001153710.1| - 2.8e-05 23.6 0.1 0.015 14.7 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|145591708|ref|YP_001153710.1| - 4.9e-05 23.8 0.6 0.00041 20.8 0.6 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|145591708|ref|YP_001153710.1| - 0.0019 18.0 0.1 0.0043 16.8 0.1 1.5 2 0 0 2 2 2 1 AAA domain BCA_ABC_TP_C PF12399.8 gi|145591708|ref|YP_001153710.1| - 0.0039 17.1 0.0 0.0072 16.2 0.0 1.4 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter T2SSE PF00437.20 gi|145591708|ref|YP_001153710.1| - 0.0051 15.9 0.2 0.008 15.3 0.2 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.6 gi|145591708|ref|YP_001153710.1| - 0.014 14.9 0.3 0.063 12.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|145591708|ref|YP_001153710.1| - 0.017 15.0 0.1 0.03 14.2 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|145591708|ref|YP_001153710.1| - 0.018 15.3 0.1 0.068 13.4 0.1 1.8 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|145591708|ref|YP_001153710.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|145591708|ref|YP_001153710.1| - 0.028 14.3 0.3 0.069 13.1 0.1 1.8 2 1 0 2 2 2 0 NTPase cobW PF02492.19 gi|145591708|ref|YP_001153710.1| - 0.046 13.3 0.5 0.077 12.6 0.5 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|145591708|ref|YP_001153710.1| - 0.055 13.8 0.2 0.11 12.8 0.2 1.4 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145591708|ref|YP_001153710.1| - 0.073 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|145591708|ref|YP_001153710.1| - 0.1 13.1 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|145591708|ref|YP_001153710.1| - 0.12 12.4 0.3 0.37 10.9 0.3 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.22 gi|145591708|ref|YP_001153710.1| - 0.15 11.7 0.1 0.26 10.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.6 gi|145591708|ref|YP_001153710.1| - 0.16 12.5 0.1 1.6 9.3 0.1 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.14 gi|145591708|ref|YP_001153710.1| - 0.17 11.8 0.1 0.37 10.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|145591708|ref|YP_001153710.1| - 0.17 11.8 0.0 0.31 10.9 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea RuvB_N PF05496.12 gi|145591708|ref|YP_001153710.1| - 0.22 11.3 0.6 0.47 10.2 0.1 1.8 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ANF_receptor PF01094.28 gi|145591709|ref|YP_001153711.1| - 7.8e-39 133.8 0.0 7.8e-39 133.8 0.0 1.6 2 0 0 2 2 2 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|145591709|ref|YP_001153711.1| - 2.1e-28 100.0 5.0 3.8e-28 99.1 5.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|145591709|ref|YP_001153711.1| - 0.00025 20.0 0.1 0.00046 19.1 0.1 1.4 1 1 1 2 2 2 1 LppC putative lipoprotein BPD_transp_2 PF02653.16 gi|145591710|ref|YP_001153712.1| - 3.9e-36 124.6 39.0 6.3e-36 123.9 39.0 1.3 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ResB PF05140.14 gi|145591710|ref|YP_001153712.1| - 0.41 9.3 2.7 0.28 9.9 0.1 1.9 1 1 1 2 2 2 0 ResB-like family BPD_transp_2 PF02653.16 gi|145591711|ref|YP_001153713.1| - 1.2e-42 145.9 32.6 2.6e-42 144.9 32.6 1.5 1 1 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.10 gi|145591711|ref|YP_001153713.1| - 0.087 12.6 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 DUF1616 PF07760.11 gi|145591711|ref|YP_001153713.1| - 0.13 11.6 3.8 0.22 10.9 2.8 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1616) ABC_tran PF00005.27 gi|145591713|ref|YP_001153715.1| - 4.3e-19 69.4 0.0 6e-19 68.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591713|ref|YP_001153715.1| - 1e-10 41.9 0.0 7.9e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591713|ref|YP_001153715.1| - 1.5e-09 37.7 0.0 0.00073 19.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|145591713|ref|YP_001153715.1| - 9e-06 25.3 0.0 1.6e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|145591713|ref|YP_001153715.1| - 1.9e-05 24.8 0.0 3.5e-05 24.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|145591713|ref|YP_001153715.1| - 0.00032 21.3 0.0 0.00042 20.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145591713|ref|YP_001153715.1| - 0.0014 18.4 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|145591713|ref|YP_001153715.1| - 0.0019 18.0 0.0 0.0022 17.8 0.0 1.1 1 0 0 1 1 1 1 AAA ATPase domain AAA_16 PF13191.6 gi|145591713|ref|YP_001153715.1| - 0.006 17.0 0.1 0.0087 16.5 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|145591713|ref|YP_001153715.1| - 0.0082 16.1 0.0 0.034 14.1 0.0 1.9 2 0 0 2 2 2 1 NTPase NACHT PF05729.12 gi|145591713|ref|YP_001153715.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|145591713|ref|YP_001153715.1| - 0.018 15.4 0.0 0.026 14.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|145591713|ref|YP_001153715.1| - 0.021 14.1 0.2 0.025 13.8 0.2 1.4 1 1 0 1 1 1 0 NB-ARC domain T2SSE PF00437.20 gi|145591713|ref|YP_001153715.1| - 0.021 13.9 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.22 gi|145591713|ref|YP_001153715.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF3584 PF12128.8 gi|145591713|ref|YP_001153715.1| - 0.032 11.8 0.1 0.043 11.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MobB PF03205.14 gi|145591713|ref|YP_001153715.1| - 0.041 13.8 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.23 gi|145591713|ref|YP_001153715.1| - 0.095 12.8 0.0 0.21 11.7 0.0 1.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase HyaE PF07449.11 gi|145591713|ref|YP_001153715.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE ATP_bind_1 PF03029.17 gi|145591713|ref|YP_001153715.1| - 0.11 12.3 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein cobW PF02492.19 gi|145591713|ref|YP_001153715.1| - 0.12 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|145591713|ref|YP_001153715.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.16 gi|145591713|ref|YP_001153715.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|145591713|ref|YP_001153715.1| - 0.19 12.0 0.1 0.27 11.6 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145591713|ref|YP_001153715.1| - 0.19 12.1 0.0 0.32 11.4 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) EPV_E5 PF08135.11 gi|145591714|ref|YP_001153716.1| - 0.045 14.1 4.0 0.045 14.1 4.0 2.4 2 1 0 2 2 2 0 Major transforming protein E5 family DUF2701 PF10857.8 gi|145591714|ref|YP_001153716.1| - 0.16 12.0 0.1 0.39 10.8 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2701) SBP_bac_11 PF13531.6 gi|145591715|ref|YP_001153717.1| - 0.00065 19.5 0.2 0.0013 18.6 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ACT PF01842.25 gi|145591716|ref|YP_001153718.1| - 9.9e-09 34.8 0.2 2.8e-08 33.4 0.1 1.8 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|145591716|ref|YP_001153718.1| - 1.3e-05 25.6 0.3 2.6e-05 24.7 0.3 1.4 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|145591716|ref|YP_001153718.1| - 0.0051 16.6 0.1 0.011 15.5 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.6 gi|145591716|ref|YP_001153718.1| - 0.0066 16.4 0.1 0.021 14.8 0.0 1.8 2 0 0 2 2 2 1 ACT domain ATP_bind_3 PF01171.20 gi|145591717|ref|YP_001153719.1| - 5e-12 46.0 0.0 9.4e-12 45.1 0.0 1.4 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|145591717|ref|YP_001153719.1| - 0.00025 21.1 0.1 0.0094 16.0 0.1 2.2 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.15 gi|145591717|ref|YP_001153719.1| - 0.012 15.1 0.3 0.012 15.1 0.3 3.2 4 0 0 4 4 4 0 RecR protein tRNA_Me_trans PF03054.16 gi|145591717|ref|YP_001153719.1| - 0.035 12.9 0.0 0.05 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase DUF3217 PF11506.8 gi|145591717|ref|YP_001153719.1| - 0.036 14.0 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3217) Glyco_transf_4 PF13439.6 gi|145591717|ref|YP_001153719.1| - 0.12 12.4 0.1 0.43 10.6 0.1 2.0 1 1 1 2 2 2 0 Glycosyltransferase Family 4 zf-B_box PF00643.24 gi|145591717|ref|YP_001153719.1| - 0.44 10.7 3.0 15 5.9 0.1 2.3 2 0 0 2 2 2 0 B-box zinc finger DZR PF12773.7 gi|145591717|ref|YP_001153719.1| - 0.51 10.4 5.2 8.9 6.4 0.5 2.4 2 0 0 2 2 2 0 Double zinc ribbon zf-piccolo PF05715.13 gi|145591717|ref|YP_001153719.1| - 2.1 8.5 4.9 1.4 9.2 0.9 2.2 2 0 0 2 2 2 0 Piccolo Zn-finger EVE PF01878.18 gi|145591718|ref|YP_001153720.1| - 2.4e-16 60.1 0.0 7e-16 58.5 0.0 1.8 2 0 0 2 2 2 1 EVE domain TaqI_C PF12950.7 gi|145591720|ref|YP_001153722.1| - 1e-08 35.2 0.0 1.8e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 TaqI-like C-terminal specificity domain Methyltransf_23 PF13489.6 gi|145591720|ref|YP_001153722.1| - 2.3e-07 30.8 0.0 7.1e-07 29.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.11 gi|145591720|ref|YP_001153722.1| - 6.2e-07 29.9 0.0 1.2e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_25 PF13649.6 gi|145591720|ref|YP_001153722.1| - 1.2e-06 29.2 0.0 7.5e-06 26.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145591720|ref|YP_001153722.1| - 5.7e-06 26.2 0.0 9.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145591720|ref|YP_001153722.1| - 0.00011 22.8 0.1 0.0067 17.0 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|145591720|ref|YP_001153722.1| - 0.00016 21.3 0.0 0.014 14.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase small domain N6_Mtase PF02384.16 gi|145591720|ref|YP_001153722.1| - 0.0011 18.3 0.0 0.0016 17.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_12 PF08242.12 gi|145591720|ref|YP_001153722.1| - 0.0014 19.3 0.0 0.012 16.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|145591720|ref|YP_001153722.1| - 0.016 15.3 0.0 0.063 13.4 0.0 1.8 1 1 0 1 1 1 0 FtsJ-like methyltransferase PCMT PF01135.19 gi|145591720|ref|YP_001153722.1| - 0.1 12.3 0.0 0.31 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TF_Zn_Ribbon PF08271.12 gi|145591721|ref|YP_001153723.1| - 0.00018 21.0 1.5 0.075 12.6 0.2 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|145591721|ref|YP_001153723.1| - 0.00055 19.9 1.8 0.00078 19.4 1.8 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|145591721|ref|YP_001153723.1| - 0.0017 18.5 2.8 0.21 11.8 0.2 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-TFIIB PF13453.6 gi|145591721|ref|YP_001153723.1| - 0.0018 17.6 1.2 0.0027 17.0 1.2 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger HypA PF01155.19 gi|145591721|ref|YP_001153723.1| - 0.0054 16.7 0.4 1.5 8.8 0.1 2.0 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|145591721|ref|YP_001153723.1| - 0.0084 15.5 4.6 0.12 11.9 0.3 2.3 2 0 0 2 2 2 1 zinc-ribbon domain DUF3268 PF11672.8 gi|145591721|ref|YP_001153723.1| - 0.012 16.0 0.9 0.013 15.8 0.9 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DZR PF12773.7 gi|145591721|ref|YP_001153723.1| - 0.012 15.6 0.5 0.016 15.3 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.7 gi|145591721|ref|YP_001153723.1| - 0.012 16.0 2.4 0.72 10.3 3.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_SprT PF17283.2 gi|145591721|ref|YP_001153723.1| - 0.013 15.4 1.4 0.035 14.0 1.4 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain GFA PF04828.14 gi|145591721|ref|YP_001153723.1| - 0.017 15.4 1.2 0.032 14.6 0.5 1.7 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme TFIIS_C PF01096.18 gi|145591721|ref|YP_001153723.1| - 0.031 14.1 3.5 2.2 8.2 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF35_N PF12172.8 gi|145591721|ref|YP_001153723.1| - 0.038 13.9 1.2 3.2 7.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|145591721|ref|YP_001153723.1| - 0.066 13.6 2.7 0.1 13.0 2.7 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin PF00301.20 gi|145591721|ref|YP_001153723.1| - 0.074 13.1 1.8 7.4 6.7 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin Rubredoxin_2 PF18073.1 gi|145591721|ref|YP_001153723.1| - 0.078 12.7 1.2 0.078 12.7 1.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_4 PF13717.6 gi|145591721|ref|YP_001153723.1| - 0.088 12.7 2.1 1 9.4 2.1 2.3 1 1 0 1 1 1 0 zinc-ribbon domain RNHCP PF12647.7 gi|145591721|ref|YP_001153723.1| - 0.093 12.7 0.5 0.13 12.3 0.5 1.4 1 1 0 1 1 1 0 RNHCP domain zf-C2H2 PF00096.26 gi|145591721|ref|YP_001153723.1| - 0.1 13.1 2.3 11 6.8 0.1 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.11 gi|145591721|ref|YP_001153723.1| - 0.13 12.2 2.4 0.4 10.6 2.4 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF1936 PF09151.10 gi|145591721|ref|YP_001153723.1| - 0.19 11.7 0.9 0.19 11.7 0.9 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF1936) zinc_ribbon_10 PF10058.9 gi|145591721|ref|YP_001153723.1| - 0.2 11.4 2.3 0.97 9.2 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Ribosomal_L32p PF01783.23 gi|145591721|ref|YP_001153723.1| - 0.4 11.0 4.1 0.86 9.9 0.7 2.1 2 0 0 2 2 2 0 Ribosomal L32p protein family zinc_ribbon_2 PF13240.6 gi|145591721|ref|YP_001153723.1| - 0.47 10.3 8.0 0.52 10.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|145591721|ref|YP_001153723.1| - 0.81 10.4 6.9 0.64 10.7 0.6 2.3 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-LITAF-like PF10601.9 gi|145591721|ref|YP_001153723.1| - 0.92 9.8 4.6 8.2 6.8 0.7 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain Coa1 PF08695.10 gi|145591722|ref|YP_001153724.1| - 0.15 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 Lon_2 PF13337.6 gi|145591723|ref|YP_001153725.1| - 4.8e-152 506.7 0.0 5.4e-152 506.5 0.0 1.0 1 0 0 1 1 1 1 Putative ATP-dependent Lon protease AAA_14 PF13173.6 gi|145591723|ref|YP_001153725.1| - 0.026 14.6 0.0 0.12 12.4 0.0 2.1 1 1 0 1 1 1 0 AAA domain UPF0547 PF10571.9 gi|145591725|ref|YP_001153727.1| - 7.2e-06 26.0 3.4 0.00051 20.1 0.2 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|145591725|ref|YP_001153727.1| - 2.4e-05 23.5 3.0 0.022 14.2 0.1 2.3 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145591725|ref|YP_001153727.1| - 2.9e-05 23.9 4.6 5.3e-05 23.0 4.0 1.8 1 1 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.8 gi|145591725|ref|YP_001153727.1| - 9.4e-05 22.2 3.9 0.0079 16.0 0.1 2.1 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_5 PF13719.6 gi|145591725|ref|YP_001153727.1| - 0.00012 21.7 3.2 0.0002 21.0 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-FPG_IleRS PF06827.14 gi|145591725|ref|YP_001153727.1| - 0.00083 19.2 3.2 0.15 12.0 0.3 2.1 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.6 gi|145591725|ref|YP_001153727.1| - 0.00093 18.5 1.6 0.0012 18.1 1.6 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.7 gi|145591725|ref|YP_001153727.1| - 0.0037 17.3 1.8 0.0084 16.1 1.8 1.6 1 1 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.11 gi|145591725|ref|YP_001153727.1| - 0.0039 16.8 5.2 0.15 11.8 0.1 2.2 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145591725|ref|YP_001153727.1| - 0.0041 17.2 3.0 0.0064 16.6 2.9 1.4 1 1 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|145591725|ref|YP_001153727.1| - 0.0065 16.2 5.8 0.66 9.8 5.8 2.2 1 1 0 1 1 1 1 zinc-ribbon domain IBR PF01485.21 gi|145591725|ref|YP_001153727.1| - 0.008 16.4 0.6 0.0096 16.1 0.6 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-LITAF-like PF10601.9 gi|145591725|ref|YP_001153727.1| - 0.01 16.1 5.1 0.31 11.3 0.3 2.0 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|145591725|ref|YP_001153727.1| - 0.012 15.6 2.2 0.03 14.3 2.2 1.6 1 1 0 1 1 1 0 Transposase zinc-binding domain Ogr_Delta PF04606.12 gi|145591725|ref|YP_001153727.1| - 0.013 15.4 3.7 0.23 11.5 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_7 PF02591.15 gi|145591725|ref|YP_001153727.1| - 0.015 15.5 3.1 0.17 12.1 0.2 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain TFIIS_C PF01096.18 gi|145591725|ref|YP_001153727.1| - 0.015 15.1 1.8 0.18 11.7 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RecR PF02132.15 gi|145591725|ref|YP_001153727.1| - 0.015 14.8 4.0 0.67 9.6 0.2 2.1 1 1 1 2 2 2 0 RecR protein Auto_anti-p27 PF06677.12 gi|145591725|ref|YP_001153727.1| - 0.021 15.0 1.1 0.81 9.9 1.9 2.0 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_4 PF14570.6 gi|145591725|ref|YP_001153727.1| - 0.022 14.6 1.5 1.5 8.7 0.4 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain YhfH PF14149.6 gi|145591725|ref|YP_001153727.1| - 0.027 14.5 0.5 0.77 9.8 0.1 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-C3HC4_3 PF13920.6 gi|145591725|ref|YP_001153727.1| - 0.028 14.3 2.5 0.79 9.6 0.3 2.1 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf_UBZ PF18439.1 gi|145591725|ref|YP_001153727.1| - 0.041 13.5 1.8 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|145591725|ref|YP_001153727.1| - 0.046 13.7 8.6 9 6.4 8.6 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain PknG_rubred PF16919.5 gi|145591725|ref|YP_001153727.1| - 0.055 13.6 0.7 0.06 13.5 0.7 1.0 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain HypA PF01155.19 gi|145591725|ref|YP_001153727.1| - 0.057 13.4 0.7 0.061 13.3 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Methyltransf_13 PF08421.11 gi|145591725|ref|YP_001153727.1| - 0.076 13.3 0.6 0.46 10.8 0.0 1.9 1 1 1 2 2 2 0 Putative zinc binding domain OrfB_Zn_ribbon PF07282.11 gi|145591725|ref|YP_001153727.1| - 0.093 12.7 2.3 0.25 11.3 2.3 1.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Cys_rich_CPXG PF14255.6 gi|145591725|ref|YP_001153727.1| - 0.11 12.4 3.1 1 9.3 0.4 2.1 2 0 0 2 2 2 0 Cysteine-rich CPXCG CpXC PF14353.6 gi|145591725|ref|YP_001153727.1| - 0.13 12.3 2.2 0.54 10.3 0.0 2.0 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.6 gi|145591725|ref|YP_001153727.1| - 0.2 12.4 8.5 2.1 9.1 1.0 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2225 PF09986.9 gi|145591725|ref|YP_001153727.1| - 0.22 11.2 2.1 4.4 7.0 0.2 2.0 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) Nudix_N_2 PF14803.6 gi|145591725|ref|YP_001153727.1| - 0.29 11.1 8.6 1 9.4 8.3 1.9 1 1 0 1 1 1 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|145591725|ref|YP_001153727.1| - 0.34 10.5 5.5 4.2 7.0 0.3 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DiS_P_DiS PF06750.13 gi|145591725|ref|YP_001153727.1| - 0.36 11.0 2.7 4.8 7.4 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-tcix PF14952.6 gi|145591725|ref|YP_001153727.1| - 0.37 10.4 5.1 0.46 10.2 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF983 PF06170.12 gi|145591725|ref|YP_001153727.1| - 0.42 11.0 2.7 1.4 9.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Rubredoxin_2 PF18073.1 gi|145591725|ref|YP_001153727.1| - 0.43 10.3 7.1 0.79 9.5 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain Arv1 PF04161.13 gi|145591725|ref|YP_001153727.1| - 0.74 9.9 2.7 8.8 6.4 0.3 2.0 1 1 1 2 2 2 0 Arv1-like family zf_Rg PF17915.1 gi|145591725|ref|YP_001153727.1| - 0.74 9.3 5.2 1.8 8.0 0.6 2.1 1 1 1 2 2 2 0 Reverse gyrase zinc finger RNHCP PF12647.7 gi|145591725|ref|YP_001153727.1| - 0.77 9.8 6.4 2.9 7.9 0.1 2.0 1 1 1 2 2 2 0 RNHCP domain PADR1 PF08063.12 gi|145591725|ref|YP_001153727.1| - 0.97 9.3 4.6 1.8 8.4 0.2 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain DUF2510 PF10708.9 gi|145591726|ref|YP_001153728.1| - 0.016 15.0 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2510) DEAD PF00270.29 gi|145591727|ref|YP_001153729.1| - 2e-26 92.8 0.0 4.3e-25 88.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|145591727|ref|YP_001153729.1| - 4.8e-18 65.5 0.0 6.2e-16 58.7 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|145591727|ref|YP_001153729.1| - 5.7e-14 52.6 0.1 1.6e-13 51.2 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) HEM4 PF02602.15 gi|145591727|ref|YP_001153729.1| - 0.015 14.6 0.1 0.064 12.6 0.0 2.0 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD ResIII PF04851.15 gi|145591727|ref|YP_001153729.1| - 0.051 13.6 0.0 0.09 12.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit MFS_1 PF07690.16 gi|145591728|ref|YP_001153730.1| - 1.4e-26 93.3 47.9 3.5e-21 75.5 37.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|145591728|ref|YP_001153730.1| - 0.00082 18.3 5.0 0.00082 18.3 5.0 2.7 2 1 0 2 2 2 1 MFS_1 like family Adenosine_kin PF04008.14 gi|145591729|ref|YP_001153731.1| - 5.1e-73 244.0 0.6 5.7e-73 243.8 0.6 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF2554 PF10829.8 gi|145591729|ref|YP_001153731.1| - 0.12 12.8 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2554) FUR PF01475.19 gi|145591730|ref|YP_001153732.1| - 5.5e-20 71.7 0.2 6.3e-20 71.5 0.2 1.0 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|145591730|ref|YP_001153732.1| - 2.4e-06 27.9 0.1 6.4e-06 26.5 0.0 1.6 1 1 1 2 2 2 1 Penicillinase repressor TrmB PF01978.19 gi|145591730|ref|YP_001153732.1| - 0.002 18.0 0.2 0.023 14.6 0.0 2.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|145591730|ref|YP_001153732.1| - 0.0045 16.7 0.0 0.015 15.0 0.0 1.8 2 0 0 2 2 2 1 LexA DNA binding domain PadR PF03551.14 gi|145591730|ref|YP_001153732.1| - 0.0046 16.9 0.0 0.0095 15.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Ribosomal_S8 PF00410.19 gi|145591730|ref|YP_001153732.1| - 0.021 14.7 0.1 0.039 13.9 0.1 1.5 1 1 0 1 1 1 0 Ribosomal protein S8 DUF3783 PF12646.7 gi|145591730|ref|YP_001153732.1| - 0.036 14.0 0.1 0.56 10.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3783) PASTA PF03793.19 gi|145591730|ref|YP_001153732.1| - 0.055 13.3 0.0 0.82 9.6 0.0 2.2 2 0 0 2 2 2 0 PASTA domain CoA_trans PF01144.23 gi|145591730|ref|YP_001153732.1| - 0.061 12.7 0.1 0.088 12.2 0.1 1.2 1 0 0 1 1 1 0 Coenzyme A transferase GHL6 PF14871.6 gi|145591730|ref|YP_001153732.1| - 0.064 13.4 0.0 0.096 12.8 0.0 1.4 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 NAD_binding_5 PF07994.12 gi|145591730|ref|YP_001153732.1| - 0.079 12.3 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Myo-inositol-1-phosphate synthase DUF4015 PF13200.6 gi|145591730|ref|YP_001153732.1| - 0.08 12.0 0.1 0.12 11.4 0.0 1.4 1 1 0 1 1 1 0 Putative glycosyl hydrolase domain HTH_Tnp_Tc3_2 PF01498.18 gi|145591730|ref|YP_001153732.1| - 0.1 12.8 0.2 0.68 10.2 0.1 2.1 2 0 0 2 2 2 0 Transposase HTH_IclR PF09339.10 gi|145591730|ref|YP_001153732.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fibritin_C PF07921.12 gi|145591730|ref|YP_001153732.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 2 0 0 2 2 2 0 Fibritin C-terminal region LacI PF00356.21 gi|145591730|ref|YP_001153732.1| - 0.49 10.2 3.1 2.3 8.1 0.0 2.7 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family DAO PF01266.24 gi|145591731|ref|YP_001153733.1| - 1.6e-51 175.9 1.3 1.9e-51 175.7 1.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|145591731|ref|YP_001153733.1| - 1.3e-06 28.6 0.2 3.2e-06 27.3 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|145591731|ref|YP_001153733.1| - 2.2e-05 23.8 0.2 0.055 12.7 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145591731|ref|YP_001153733.1| - 4.3e-05 22.9 0.2 0.078 12.2 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|145591731|ref|YP_001153733.1| - 0.00022 20.4 0.1 0.0019 17.4 0.1 2.0 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|145591731|ref|YP_001153733.1| - 0.0041 17.7 0.3 0.096 13.3 0.1 3.0 4 0 0 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|145591731|ref|YP_001153733.1| - 0.0095 15.2 0.1 0.017 14.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|145591731|ref|YP_001153733.1| - 0.013 15.5 0.7 0.072 13.1 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Mqo PF06039.15 gi|145591731|ref|YP_001153733.1| - 0.052 12.1 0.0 0.073 11.6 0.0 1.2 1 0 0 1 1 1 0 Malate:quinone oxidoreductase (Mqo) GIDA PF01134.22 gi|145591731|ref|YP_001153733.1| - 0.18 10.9 0.1 8.8 5.3 0.1 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A SH3_3 PF08239.11 gi|145591732|ref|YP_001153734.1| - 0.025 14.8 2.2 0.06 13.6 0.7 1.9 1 1 1 2 2 2 0 Bacterial SH3 domain DUF2188 PF09954.9 gi|145591732|ref|YP_001153734.1| - 0.051 13.7 0.1 0.063 13.4 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) STb_secrete PF09075.10 gi|145591732|ref|YP_001153734.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Heat-stable enterotoxin B, secretory ATP-grasp_2 PF08442.10 gi|145591733|ref|YP_001153735.1| - 2e-67 226.7 1.3 3.2e-67 226.0 0.4 1.7 2 0 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|145591733|ref|YP_001153735.1| - 9.9e-17 61.2 0.4 1.7e-16 60.4 0.4 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|145591733|ref|YP_001153735.1| - 2.3e-13 50.1 1.3 1.2e-12 47.8 1.3 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|145591733|ref|YP_001153735.1| - 5.9e-09 35.7 0.2 1.1e-08 34.8 0.2 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_A PF01071.19 gi|145591733|ref|YP_001153735.1| - 5.5e-06 26.3 0.3 1.1e-05 25.3 0.3 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|145591733|ref|YP_001153735.1| - 0.00027 20.5 0.1 0.00046 19.8 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|145591733|ref|YP_001153735.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain CoA_binding PF02629.19 gi|145591734|ref|YP_001153736.1| - 9.9e-32 109.5 2.1 9.9e-32 109.5 2.1 2.6 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|145591734|ref|YP_001153736.1| - 4.2e-12 46.1 0.2 9e-12 45.1 0.2 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|145591734|ref|YP_001153736.1| - 9.4e-11 41.7 0.0 1.9e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|145591734|ref|YP_001153736.1| - 5.9e-09 36.4 1.0 1.2e-08 35.4 0.4 1.8 2 0 0 2 2 2 1 CoA binding domain GFO_IDH_MocA PF01408.22 gi|145591734|ref|YP_001153736.1| - 0.013 16.3 0.3 0.07 14.0 0.2 2.1 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold SHOCT PF09851.9 gi|145591734|ref|YP_001153736.1| - 0.15 11.8 0.1 0.27 11.0 0.1 1.4 1 0 0 1 1 1 0 Short C-terminal domain zf-HIT PF04438.16 gi|145591735|ref|YP_001153737.1| - 6.7e-05 22.7 7.5 6.7e-05 22.7 7.5 3.9 2 1 2 4 4 4 2 HIT zinc finger zf-B_box PF00643.24 gi|145591735|ref|YP_001153737.1| - 0.0034 17.5 26.6 0.024 14.8 9.3 3.8 3 1 1 4 4 4 3 B-box zinc finger zf-C2HC5 PF06221.13 gi|145591735|ref|YP_001153737.1| - 2.8 8.0 24.6 0.85 9.7 4.6 3.1 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-MYND PF01753.18 gi|145591735|ref|YP_001153737.1| - 3.4 7.8 26.1 53 4.0 9.6 4.1 2 2 1 3 3 3 0 MYND finger FYVE PF01363.21 gi|145591735|ref|YP_001153737.1| - 8.1 6.7 33.6 4.4 7.5 18.9 3.8 1 1 1 2 2 2 0 FYVE zinc finger Aminotran_1_2 PF00155.21 gi|145591736|ref|YP_001153738.1| - 3.7e-41 141.5 0.0 4.1e-41 141.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|145591736|ref|YP_001153738.1| - 2.2e-12 46.5 0.0 2.9e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase PAR1 PF06521.11 gi|145591736|ref|YP_001153738.1| - 0.064 12.9 0.0 0.099 12.3 0.0 1.2 1 0 0 1 1 1 0 PAR1 protein DegT_DnrJ_EryC1 PF01041.17 gi|145591736|ref|YP_001153738.1| - 0.081 12.2 0.0 0.14 11.4 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family PALP PF00291.25 gi|145591737|ref|YP_001153739.1| - 1.1e-87 294.2 2.5 1.3e-87 294.0 2.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|145591737|ref|YP_001153739.1| - 1.3e-10 40.8 0.1 4.2e-10 39.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|145591737|ref|YP_001153739.1| - 0.00028 21.4 0.0 0.00066 20.2 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|145591737|ref|YP_001153739.1| - 0.024 14.4 4.0 0.43 10.4 0.0 3.3 2 1 1 3 3 3 0 ACT domain ACT_6 PF13740.6 gi|145591737|ref|YP_001153739.1| - 0.14 12.2 0.0 0.51 10.4 0.0 2.0 1 1 0 1 1 1 0 ACT domain tRNA_SAD PF07973.14 gi|145591738|ref|YP_001153740.1| - 1.2e-12 47.7 0.1 1.9e-12 47.0 0.1 1.4 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|145591738|ref|YP_001153740.1| - 3.4e-06 25.9 0.2 4.9e-06 25.3 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) Na_H_Exchanger PF00999.21 gi|145591739|ref|YP_001153741.1| - 7.6e-16 57.9 46.5 7.6e-16 57.9 46.5 2.8 2 1 0 2 2 2 1 Sodium/hydrogen exchanger family TEX29 PF15839.5 gi|145591739|ref|YP_001153741.1| - 4.5 7.9 9.0 5.5 7.7 1.2 2.8 2 0 0 2 2 2 0 Testis-expressed sequence 29 protein HD PF01966.22 gi|145591742|ref|YP_001153744.1| - 4.6e-06 26.9 0.3 7.6e-06 26.2 0.3 1.3 1 0 0 1 1 1 1 HD domain TRI12 PF06609.13 gi|145591742|ref|YP_001153744.1| - 0.00031 19.3 0.0 0.00045 18.8 0.0 1.1 1 0 0 1 1 1 1 Fungal trichothecene efflux pump (TRI12) CutA1 PF03091.15 gi|145591743|ref|YP_001153745.1| - 1.3e-37 127.6 0.2 1.5e-37 127.4 0.2 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein PhosphMutase PF10143.9 gi|145591744|ref|YP_001153746.1| - 3.6e-51 173.4 0.0 5.3e-51 172.9 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|145591744|ref|YP_001153746.1| - 2e-33 115.8 0.0 2.5e-33 115.5 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|145591744|ref|YP_001153746.1| - 0.00027 20.0 0.2 0.0037 16.3 0.3 2.0 1 1 1 2 2 2 2 Alkaline phosphatase Phosphodiest PF01663.22 gi|145591744|ref|YP_001153746.1| - 0.0053 16.4 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase MAF_flag10 PF01973.18 gi|145591746|ref|YP_001153748.1| - 7.1e-10 38.8 0.0 1.1e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 MFS_1 PF07690.16 gi|145591747|ref|YP_001153749.1| - 7.1e-44 150.2 53.4 4.8e-35 121.1 24.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|145591747|ref|YP_001153749.1| - 1.3e-40 139.6 28.7 8.4e-31 107.3 7.0 2.0 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|145591747|ref|YP_001153749.1| - 1e-13 51.3 34.4 1.3e-13 51.0 34.4 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|145591747|ref|YP_001153749.1| - 0.015 14.2 23.1 0.073 11.9 15.1 2.7 1 1 1 3 3 3 0 MFS_1 like family DUF5426 PF17473.2 gi|145591747|ref|YP_001153749.1| - 1.7 8.9 3.6 40 4.5 0.2 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5426) tRNA_deacylase PF04414.12 gi|145591748|ref|YP_001153750.1| - 5.3e-37 127.3 0.1 6.9e-37 127.0 0.1 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase SpoU_sub_bind PF08032.12 gi|145591748|ref|YP_001153750.1| - 0.046 14.0 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 RNA 2'-O ribose methyltransferase substrate binding ADH_N PF08240.12 gi|145591749|ref|YP_001153751.1| - 6.9e-31 106.4 0.1 1.1e-30 105.8 0.1 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|145591749|ref|YP_001153751.1| - 6.8e-18 64.9 0.0 1.3e-16 60.7 0.0 2.2 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|145591749|ref|YP_001153751.1| - 8.6e-13 49.5 0.1 2.2e-12 48.1 0.0 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|145591749|ref|YP_001153751.1| - 0.00038 19.9 0.1 0.0006 19.2 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|145591749|ref|YP_001153751.1| - 0.001 18.4 0.2 0.0017 17.7 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|145591749|ref|YP_001153751.1| - 0.0021 18.1 0.1 0.004 17.2 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|145591749|ref|YP_001153751.1| - 0.0061 16.2 0.0 0.0098 15.5 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF1188 PF06690.11 gi|145591749|ref|YP_001153751.1| - 0.0063 16.1 0.0 0.0091 15.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) Pyr_redox_2 PF07992.14 gi|145591749|ref|YP_001153751.1| - 0.03 13.6 0.1 0.054 12.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Oxidored_nitro PF00148.19 gi|145591749|ref|YP_001153751.1| - 0.038 12.7 0.0 0.15 10.8 0.0 1.8 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase NAD_binding_7 PF13241.6 gi|145591749|ref|YP_001153751.1| - 0.05 14.1 0.1 0.094 13.2 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.21 gi|145591749|ref|YP_001153751.1| - 0.072 13.2 0.2 0.12 12.4 0.2 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FAD_binding_3 PF01494.19 gi|145591749|ref|YP_001153751.1| - 0.084 12.1 0.3 0.12 11.6 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|145591749|ref|YP_001153751.1| - 0.085 13.4 0.1 0.16 12.6 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|145591749|ref|YP_001153751.1| - 0.099 12.5 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|145591749|ref|YP_001153751.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M20 PF01546.28 gi|145591750|ref|YP_001153752.1| - 5.1e-41 140.6 0.1 6.5e-41 140.3 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|145591750|ref|YP_001153752.1| - 1.1e-20 73.6 0.0 1.9e-20 72.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain FAM110_C PF14160.6 gi|145591750|ref|YP_001153752.1| - 0.074 14.1 0.0 0.13 13.3 0.0 1.3 1 0 0 1 1 1 0 Centrosome-associated C terminus PreAtp-grasp PF18604.1 gi|145591750|ref|YP_001153752.1| - 0.15 11.7 0.1 0.27 10.9 0.1 1.3 1 0 0 1 1 1 0 Pre ATP-grasp domain Nitroreductase PF00881.24 gi|145591751|ref|YP_001153753.1| - 5.8e-32 111.1 0.0 6.9e-32 110.8 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|145591751|ref|YP_001153753.1| - 9.2e-07 28.6 0.0 0.0078 15.8 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase HTH_17 PF12728.7 gi|145591751|ref|YP_001153753.1| - 0.28 11.4 5.0 6.8 7.0 0.1 3.2 4 0 0 4 4 4 0 Helix-turn-helix domain Methyltransf_11 PF08241.12 gi|145591753|ref|YP_001153755.1| - 7.1e-12 45.8 0.0 1.2e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591753|ref|YP_001153755.1| - 9.8e-09 35.8 0.0 2e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|145591753|ref|YP_001153755.1| - 1.6e-08 34.2 0.0 3.6e-08 33.0 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|145591753|ref|YP_001153755.1| - 6.7e-05 22.7 0.0 0.00043 20.1 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591753|ref|YP_001153755.1| - 0.0028 17.5 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|145591753|ref|YP_001153755.1| - 0.097 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 DREV methyltransferase Tox-ART-HYE1 PF15634.6 gi|145591753|ref|YP_001153755.1| - 0.11 11.8 0.1 0.16 11.2 0.1 1.2 1 0 0 1 1 1 0 HYE1 signature containing ADP-ribosyltransferase Methyltransf_12 PF08242.12 gi|145591753|ref|YP_001153755.1| - 0.11 13.2 0.0 0.24 12.2 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591754|ref|YP_001153756.1| - 0.018 14.8 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TF_Zn_Ribbon PF08271.12 gi|145591755|ref|YP_001153757.1| - 0.0022 17.5 1.5 0.18 11.3 0.2 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|145591755|ref|YP_001153757.1| - 0.0052 16.7 0.5 0.02 14.8 0.2 1.9 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Rad50_zn_hook PF04423.14 gi|145591755|ref|YP_001153757.1| - 0.013 15.3 0.6 0.048 13.5 0.2 1.9 2 0 0 2 2 2 0 Rad50 zinc hook motif OmdA PF13376.6 gi|145591755|ref|YP_001153757.1| - 0.038 14.0 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated Asparaginase_C PF17763.1 gi|145591755|ref|YP_001153757.1| - 0.11 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Glutaminase/Asparaginase C-terminal domain BET PF17035.5 gi|145591755|ref|YP_001153757.1| - 0.15 12.3 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Bromodomain extra-terminal - transcription regulation UPF0126 PF03458.13 gi|145591759|ref|YP_001153761.1| - 5.8e-43 144.7 11.2 2.6e-22 78.5 1.6 2.3 2 0 0 2 2 2 2 UPF0126 domain 2_5_RNA_ligase2 PF13563.6 gi|145591761|ref|YP_001153763.1| - 1.4e-08 34.8 0.1 2e-07 31.0 0.1 2.0 1 1 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|145591761|ref|YP_001153763.1| - 9.7e-05 22.5 0.7 0.22 11.7 0.0 2.7 2 1 0 2 2 2 2 LigT like Phosphoesterase ABC_tran PF00005.27 gi|145591762|ref|YP_001153764.1| - 2.1e-38 131.9 0.0 6.6e-21 75.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|145591762|ref|YP_001153764.1| - 2.3e-12 46.8 1.0 7e-05 22.4 0.1 3.3 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|145591762|ref|YP_001153764.1| - 6e-12 45.2 4.1 1.6e-11 43.8 4.1 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|145591762|ref|YP_001153764.1| - 2.1e-11 44.2 0.3 0.018 14.9 0.0 4.2 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system Fer4 PF00037.27 gi|145591762|ref|YP_001153764.1| - 9.4e-08 31.6 11.2 2.7e-07 30.1 3.9 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145591762|ref|YP_001153764.1| - 6.5e-07 29.2 14.2 9.1e-05 22.4 3.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain AAA PF00004.29 gi|145591762|ref|YP_001153764.1| - 8.2e-05 23.0 0.1 0.56 10.6 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Fer4_21 PF14697.6 gi|145591762|ref|YP_001153764.1| - 0.00026 21.1 11.0 0.00045 20.3 11.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145591762|ref|YP_001153764.1| - 0.0003 20.8 12.2 0.0039 17.3 12.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145591762|ref|YP_001153764.1| - 0.0004 20.5 8.5 0.00092 19.3 8.5 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591762|ref|YP_001153764.1| - 0.00048 20.1 10.1 0.00077 19.4 0.7 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain MMR_HSR1 PF01926.23 gi|145591762|ref|YP_001153764.1| - 0.00049 20.2 0.1 0.084 13.0 0.0 2.8 2 2 0 2 2 2 1 50S ribosome-binding GTPase RuvB_N PF05496.12 gi|145591762|ref|YP_001153764.1| - 0.00067 19.4 0.1 1.5 8.5 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain Fer4_7 PF12838.7 gi|145591762|ref|YP_001153764.1| - 0.0012 19.4 12.3 0.0033 18.0 1.9 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain RsgA_GTPase PF03193.16 gi|145591762|ref|YP_001153764.1| - 0.0015 18.5 0.2 0.02 14.8 0.1 2.4 2 0 0 2 2 2 1 RsgA GTPase AAA_24 PF13479.6 gi|145591762|ref|YP_001153764.1| - 0.0039 17.0 0.2 0.31 10.7 0.1 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.6 gi|145591762|ref|YP_001153764.1| - 0.0043 17.2 0.1 2.5 8.4 0.0 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.6 gi|145591762|ref|YP_001153764.1| - 0.0058 16.4 0.4 0.54 9.9 0.1 3.1 4 0 0 4 4 3 1 AAA ATPase domain RecA PF00154.21 gi|145591762|ref|YP_001153764.1| - 0.0083 15.6 0.1 0.5 9.8 0.0 2.3 2 0 0 2 2 2 1 recA bacterial DNA recombination protein AAA_14 PF13173.6 gi|145591762|ref|YP_001153764.1| - 0.01 15.9 0.1 2.4 8.2 0.0 2.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|145591762|ref|YP_001153764.1| - 0.012 16.0 0.0 1.9 8.9 0.0 2.8 3 0 0 3 3 2 0 RNA helicase AAA_33 PF13671.6 gi|145591762|ref|YP_001153764.1| - 0.013 15.7 0.5 0.3 11.3 0.2 2.8 3 1 0 3 3 2 0 AAA domain TsaE PF02367.17 gi|145591762|ref|YP_001153764.1| - 0.022 14.7 0.1 0.56 10.2 0.0 2.8 3 0 0 3 3 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MobB PF03205.14 gi|145591762|ref|YP_001153764.1| - 0.032 14.1 0.5 0.46 10.4 0.1 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|145591762|ref|YP_001153764.1| - 0.034 14.5 0.0 0.86 10.0 0.0 2.4 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.12 gi|145591762|ref|YP_001153764.1| - 0.045 13.7 0.5 0.24 11.3 0.1 2.1 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.6 gi|145591762|ref|YP_001153764.1| - 0.05 14.1 0.0 0.64 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|145591762|ref|YP_001153764.1| - 0.052 13.3 0.0 0.19 11.5 0.0 2.0 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|145591762|ref|YP_001153764.1| - 0.067 13.1 0.2 3.4 7.5 0.1 2.6 2 1 1 3 3 3 0 Rad17 P-loop domain AAA_25 PF13481.6 gi|145591762|ref|YP_001153764.1| - 0.083 12.5 0.4 1.4 8.4 0.0 2.6 3 0 0 3 3 2 0 AAA domain IstB_IS21 PF01695.17 gi|145591762|ref|YP_001153764.1| - 0.15 11.8 0.7 0.68 9.6 0.0 2.3 3 0 0 3 3 3 0 IstB-like ATP binding protein Fer4_16 PF13484.6 gi|145591762|ref|YP_001153764.1| - 0.18 12.8 11.7 0.19 12.7 2.8 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain DnaB_C PF03796.15 gi|145591762|ref|YP_001153764.1| - 0.21 10.9 0.6 11 5.3 0.0 3.2 4 0 0 4 4 4 0 DnaB-like helicase C terminal domain Fer4_8 PF13183.6 gi|145591762|ref|YP_001153764.1| - 0.41 11.1 6.5 0.23 11.9 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591762|ref|YP_001153764.1| - 0.52 10.9 8.7 12 6.5 8.8 2.3 1 1 0 1 1 1 0 4Fe-4S dicluster domain NB-ARC PF00931.22 gi|145591762|ref|YP_001153764.1| - 0.74 8.9 3.3 2.9 7.0 0.3 2.3 2 0 0 2 2 2 0 NB-ARC domain Fer4_4 PF12800.7 gi|145591762|ref|YP_001153764.1| - 1.5 9.5 14.1 0.63 10.7 2.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145591762|ref|YP_001153764.1| - 4.1 8.6 17.2 3 9.0 4.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain NTPase_1 PF03266.15 gi|145591762|ref|YP_001153764.1| - 7.7 6.4 7.2 3.8 7.4 0.5 3.3 4 0 0 4 4 3 0 NTPase Myco_arth_vir_N PF09610.10 gi|145591763|ref|YP_001153765.1| - 0.25 11.4 0.4 0.25 11.4 0.4 2.4 3 0 0 3 3 3 0 Mycoplasma virulence signal region (Myco_arth_vir_N) PhoR PF11808.8 gi|145591763|ref|YP_001153765.1| - 0.85 10.1 4.5 0.34 11.3 1.5 1.8 1 1 1 2 2 2 0 Phosphate regulon sensor protein PhoR TraG_N PF07916.11 gi|145591763|ref|YP_001153765.1| - 3.8 6.2 9.0 4 6.2 9.0 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region Glycos_transf_2 PF00535.26 gi|145591764|ref|YP_001153766.1| - 2.4e-14 53.5 0.0 3.4e-14 53.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|145591764|ref|YP_001153766.1| - 1.8e-13 51.0 0.0 2.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|145591764|ref|YP_001153766.1| - 3.9e-09 36.2 0.0 6.3e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 RHH_1 PF01402.21 gi|145591765|ref|YP_001153767.1| - 1.1e-05 25.2 0.1 3.1e-05 23.7 0.1 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family MitMem_reg PF13012.6 gi|145591765|ref|YP_001153767.1| - 0.053 13.9 0.1 0.069 13.6 0.1 1.4 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function P21-Arc PF04062.14 gi|145591765|ref|YP_001153767.1| - 0.092 12.8 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 ARP2/3 complex ARPC3 (21 kDa) subunit Flavodoxin_2 PF02525.17 gi|145591766|ref|YP_001153768.1| - 0.11 12.2 0.0 0.11 12.2 0.0 1.0 1 0 0 1 1 1 0 Flavodoxin-like fold GatB_Yqey PF02637.18 gi|145591767|ref|YP_001153769.1| - 0.098 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 GatB domain DEAD PF00270.29 gi|145591769|ref|YP_001153771.1| - 4.5e-35 121.0 0.0 4.2e-34 117.8 0.0 2.4 3 0 0 3 3 3 1 DEAD/DEAH box helicase DEAD_assoc PF08494.11 gi|145591769|ref|YP_001153771.1| - 1.7e-31 109.6 2.9 2e-31 109.3 0.5 2.3 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.31 gi|145591769|ref|YP_001153771.1| - 2.6e-19 69.6 0.0 1.6e-17 63.9 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|145591769|ref|YP_001153771.1| - 3.6e-10 40.1 0.0 8.2e-10 38.9 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_23 PF13384.6 gi|145591769|ref|YP_001153771.1| - 0.0016 18.2 0.3 0.019 14.7 0.0 2.8 2 0 0 2 2 2 1 Homeodomain-like domain AAA_25 PF13481.6 gi|145591769|ref|YP_001153771.1| - 0.0064 16.1 0.1 0.0064 16.1 0.1 2.5 3 0 0 3 3 3 1 AAA domain DUF3071 PF11268.8 gi|145591769|ref|YP_001153771.1| - 0.0083 16.2 0.3 0.027 14.5 0.3 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF3071) AAA_19 PF13245.6 gi|145591769|ref|YP_001153771.1| - 0.011 16.1 0.3 0.05 13.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|145591769|ref|YP_001153771.1| - 0.014 15.2 0.0 0.24 11.2 0.0 2.6 2 1 0 3 3 3 0 AAA domain CcmH PF03918.14 gi|145591769|ref|YP_001153771.1| - 0.016 14.5 0.1 0.09 12.1 0.0 2.1 2 0 0 2 2 2 0 Cytochrome C biogenesis protein DUF433 PF04255.14 gi|145591769|ref|YP_001153771.1| - 0.028 14.3 0.3 0.64 9.9 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF433) SNF2_N PF00176.23 gi|145591769|ref|YP_001153771.1| - 0.029 13.1 0.0 0.052 12.3 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain UvrD-helicase PF00580.21 gi|145591769|ref|YP_001153771.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Sigma70_r4 PF04545.16 gi|145591769|ref|YP_001153771.1| - 0.85 9.2 4.1 2.3 7.8 0.4 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 CBS PF00571.28 gi|145591771|ref|YP_001153773.1| - 2.9e-45 152.5 14.4 7.5e-14 51.9 0.1 4.2 4 0 0 4 4 4 4 CBS domain RBD PF02196.15 gi|145591771|ref|YP_001153773.1| - 0.096 12.8 0.0 22 5.2 0.0 2.8 3 0 0 3 3 3 0 Raf-like Ras-binding domain Ham1p_like PF01725.16 gi|145591772|ref|YP_001153774.1| - 1e-50 172.3 0.0 1.1e-50 172.1 0.0 1.0 1 0 0 1 1 1 1 Ham1 family Thioredoxin_3 PF13192.6 gi|145591773|ref|YP_001153775.1| - 1.3e-14 54.0 0.6 3.4e-10 39.8 0.2 2.5 3 0 0 3 3 3 2 Thioredoxin domain Thioredoxin PF00085.20 gi|145591773|ref|YP_001153775.1| - 3.1e-09 36.7 0.0 2.7e-05 24.1 0.0 2.4 2 1 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|145591773|ref|YP_001153775.1| - 0.0011 19.2 1.2 0.12 12.6 0.1 3.1 3 0 0 3 3 3 1 Glutaredoxin Thioredoxin_2 PF13098.6 gi|145591773|ref|YP_001153775.1| - 0.002 18.5 0.6 0.026 15.0 0.4 2.6 2 1 0 2 2 2 1 Thioredoxin-like domain TraF PF13728.6 gi|145591773|ref|YP_001153775.1| - 0.0031 17.4 0.0 0.011 15.5 0.0 1.8 2 0 0 2 2 2 1 F plasmid transfer operon protein ABC_transp_aux PF09822.9 gi|145591773|ref|YP_001153775.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.4 1 1 0 1 1 1 0 ABC-type uncharacterized transport system Redoxin PF08534.10 gi|145591773|ref|YP_001153775.1| - 0.041 13.6 0.1 0.16 11.7 0.1 1.9 1 1 1 2 2 2 0 Redoxin DSBA PF01323.20 gi|145591773|ref|YP_001153775.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Peptidase_S49_N PF08496.10 gi|145591774|ref|YP_001153776.1| - 0.003 17.6 3.6 0.0036 17.4 3.6 1.1 1 0 0 1 1 1 1 Peptidase family S49 N-terminal D5_N PF08706.11 gi|145591774|ref|YP_001153776.1| - 0.11 12.7 1.2 0.16 12.2 1.2 1.1 1 0 0 1 1 1 0 D5 N terminal like Ldh_1_N PF00056.23 gi|145591775|ref|YP_001153777.1| - 4.7e-40 136.9 0.1 6.4e-40 136.5 0.1 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|145591775|ref|YP_001153777.1| - 1e-18 67.8 0.0 2.1e-18 66.8 0.0 1.4 2 0 0 2 2 2 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Glyco_hydro_4 PF02056.16 gi|145591775|ref|YP_001153777.1| - 1.5e-05 24.6 1.3 0.0002 21.0 0.0 2.6 2 1 1 3 3 3 1 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|145591775|ref|YP_001153777.1| - 0.01 15.4 1.6 0.039 13.5 1.6 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|145591776|ref|YP_001153778.1| - 3.7e-66 223.3 9.4 4.6e-66 223.0 9.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145591776|ref|YP_001153778.1| - 7.6e-26 90.5 13.9 1.7e-20 73.4 2.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|145591776|ref|YP_001153778.1| - 1.7e-18 66.9 5.8 5.6e-16 58.7 1.1 2.3 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|145591776|ref|YP_001153778.1| - 8.3e-16 58.2 1.5 2.3e-15 56.8 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.24 gi|145591776|ref|YP_001153778.1| - 8.4e-13 48.6 17.9 0.00051 19.7 1.5 4.2 2 2 2 4 4 4 4 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|145591776|ref|YP_001153778.1| - 8.2e-11 41.2 10.5 0.0013 17.5 0.7 4.3 3 1 1 4 4 4 4 HI0933-like protein K_oxygenase PF13434.6 gi|145591776|ref|YP_001153778.1| - 3.7e-09 36.2 1.6 3.8e-07 29.6 0.0 2.8 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|145591776|ref|YP_001153778.1| - 1.3e-07 31.8 1.8 0.001 19.2 0.3 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|145591776|ref|YP_001153778.1| - 5.7e-07 29.0 13.6 0.0016 17.6 1.7 3.5 2 2 1 3 3 3 3 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|145591776|ref|YP_001153778.1| - 5.1e-05 22.7 7.0 0.011 15.1 0.9 2.7 2 1 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|145591776|ref|YP_001153778.1| - 6.6e-05 23.0 11.1 0.6 10.1 0.0 4.2 3 1 1 4 4 4 3 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|145591776|ref|YP_001153778.1| - 0.0002 21.7 3.2 0.11 13.0 0.5 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|145591776|ref|YP_001153778.1| - 0.0014 18.0 0.6 0.016 14.6 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|145591776|ref|YP_001153778.1| - 0.0019 17.4 3.4 0.016 14.3 0.5 2.4 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|145591776|ref|YP_001153778.1| - 0.0025 17.7 1.8 0.013 15.4 0.4 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|145591776|ref|YP_001153778.1| - 0.0029 16.9 4.6 0.2 10.9 0.3 3.0 3 0 0 3 3 3 1 FAD binding domain FAD_binding_2 PF00890.24 gi|145591776|ref|YP_001153778.1| - 0.0035 16.5 1.9 0.0035 16.5 1.9 3.8 2 2 0 4 4 4 1 FAD binding domain FAD_oxidored PF12831.7 gi|145591776|ref|YP_001153778.1| - 0.0038 16.6 17.9 0.0094 15.3 2.2 3.8 3 1 1 4 4 4 1 FAD dependent oxidoreductase TrkA_N PF02254.18 gi|145591776|ref|YP_001153778.1| - 0.0085 16.3 1.3 0.71 10.2 0.1 2.8 2 1 0 2 2 2 1 TrkA-N domain Amino_oxidase PF01593.24 gi|145591776|ref|YP_001153778.1| - 0.04 13.2 0.8 0.4 9.9 0.1 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase ocr PF08684.10 gi|145591776|ref|YP_001153778.1| - 0.043 14.3 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 DNA mimic ocr GMC_oxred_N PF00732.19 gi|145591776|ref|YP_001153778.1| - 0.076 12.4 0.0 0.21 10.9 0.0 1.9 1 0 0 1 1 1 0 GMC oxidoreductase Mqo PF06039.15 gi|145591776|ref|YP_001153778.1| - 0.14 10.6 0.2 0.44 9.0 0.0 1.9 2 0 0 2 2 2 0 Malate:quinone oxidoreductase (Mqo) Trp_halogenase PF04820.14 gi|145591776|ref|YP_001153778.1| - 1.2 7.9 8.6 0.057 12.2 0.4 2.6 2 2 1 3 3 3 0 Tryptophan halogenase Thioredoxin PF00085.20 gi|145591777|ref|YP_001153779.1| - 2e-10 40.6 0.0 2.6e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|145591777|ref|YP_001153779.1| - 1.5e-07 31.8 0.8 5.3e-06 26.8 0.8 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|145591777|ref|YP_001153779.1| - 8.8e-06 25.7 0.0 2.6e-05 24.2 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin domain TraF PF13728.6 gi|145591777|ref|YP_001153779.1| - 9.1e-06 25.7 0.1 1.3e-05 25.2 0.1 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein DSBA PF01323.20 gi|145591777|ref|YP_001153779.1| - 0.00011 22.1 0.8 0.061 13.1 0.0 2.3 1 1 1 2 2 2 2 DSBA-like thioredoxin domain UbiA PF01040.18 gi|145591778|ref|YP_001153780.1| - 1.7e-33 116.0 22.2 2.1e-33 115.7 22.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family MFS_1 PF07690.16 gi|145591779|ref|YP_001153781.1| - 1.7e-17 63.4 50.1 1.7e-17 63.4 50.1 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Ribosomal_L6 PF00347.23 gi|145591780|ref|YP_001153782.1| - 3.1e-20 72.6 7.6 1.5e-10 41.6 2.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DUF35_N PF12172.8 gi|145591781|ref|YP_001153783.1| - 0.002 17.9 0.3 0.32 10.9 0.0 2.3 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.6 gi|145591781|ref|YP_001153783.1| - 0.0088 16.1 0.5 3.7 7.7 0.0 2.2 2 0 0 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 Zn-ribbon_8 PF09723.10 gi|145591781|ref|YP_001153783.1| - 0.011 15.9 0.8 1.3 9.2 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|145591781|ref|YP_001153783.1| - 0.016 15.1 1.1 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145591781|ref|YP_001153783.1| - 0.018 14.5 0.5 4.8 6.8 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|145591781|ref|YP_001153783.1| - 0.02 14.3 1.8 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|145591781|ref|YP_001153783.1| - 0.031 14.2 1.5 1.9 8.5 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|145591781|ref|YP_001153783.1| - 0.77 9.5 3.8 10 5.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain HAD_2 PF13419.6 gi|145591782|ref|YP_001153784.1| - 1.4e-09 38.3 0.0 1.5e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145591782|ref|YP_001153784.1| - 2.2e-07 31.4 0.0 2.6e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145591782|ref|YP_001153784.1| - 0.00013 22.4 0.0 0.00016 22.2 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|145591782|ref|YP_001153784.1| - 0.011 15.8 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like MarR_2 PF12802.7 gi|145591783|ref|YP_001153785.1| - 0.0012 18.7 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|145591783|ref|YP_001153785.1| - 0.069 13.0 0.0 0.081 12.7 0.0 1.1 1 0 0 1 1 1 0 IclR helix-turn-helix domain MMPL PF03176.15 gi|145591784|ref|YP_001153786.1| - 2.9e-69 233.5 35.3 4.3e-40 137.7 14.1 2.3 2 0 0 2 2 2 2 MMPL family Aldolase_II PF00596.21 gi|145591784|ref|YP_001153786.1| - 0.12 12.3 0.1 0.33 10.9 0.1 1.8 2 0 0 2 2 2 0 Class II Aldolase and Adducin N-terminal domain MacB_PCD PF12704.7 gi|145591785|ref|YP_001153787.1| - 4e-13 50.2 3.4 4e-13 50.2 3.4 2.2 2 1 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|145591785|ref|YP_001153787.1| - 4.3e-13 49.5 5.2 4.3e-13 49.5 5.2 3.0 3 0 0 3 3 3 2 FtsX-like permease family Gal-bind_lectin PF00337.22 gi|145591785|ref|YP_001153787.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 Galactoside-binding lectin ABC_tran PF00005.27 gi|145591786|ref|YP_001153788.1| - 7.4e-32 110.7 0.0 9.8e-32 110.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591786|ref|YP_001153788.1| - 6.7e-12 45.8 0.6 2.4e-08 34.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591786|ref|YP_001153788.1| - 0.00012 21.5 0.1 0.0066 15.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|145591786|ref|YP_001153788.1| - 0.0028 18.1 0.0 0.014 15.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145591786|ref|YP_001153788.1| - 0.0071 16.7 0.0 0.013 15.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|145591786|ref|YP_001153788.1| - 0.0073 16.0 0.1 0.014 15.1 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|145591786|ref|YP_001153788.1| - 0.0078 16.5 0.1 0.081 13.2 0.1 2.2 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|145591786|ref|YP_001153788.1| - 0.0089 16.0 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|145591786|ref|YP_001153788.1| - 0.024 14.4 0.1 0.055 13.2 0.1 1.5 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|145591786|ref|YP_001153788.1| - 0.056 13.7 0.2 0.31 11.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|145591786|ref|YP_001153788.1| - 0.086 12.7 0.0 0.64 9.9 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|145591786|ref|YP_001153788.1| - 0.11 11.6 0.1 0.17 10.9 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|145591786|ref|YP_001153788.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|145591786|ref|YP_001153788.1| - 0.12 11.0 0.0 8.1 5.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|145591786|ref|YP_001153788.1| - 0.14 12.1 0.2 0.15 12.0 0.2 1.5 1 1 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|145591786|ref|YP_001153788.1| - 0.24 10.5 0.0 6.2 5.9 0.0 2.0 2 0 0 2 2 2 0 NB-ARC domain AAA_23 PF13476.6 gi|145591786|ref|YP_001153788.1| - 0.3 11.5 0.3 0.52 10.8 0.3 1.3 1 0 0 1 1 1 0 AAA domain Focal_AT PF03623.13 gi|145591787|ref|YP_001153789.1| - 0.0029 17.6 1.8 0.01 15.9 0.6 2.6 3 0 0 3 3 2 1 Focal adhesion targeting region Spc7 PF08317.11 gi|145591787|ref|YP_001153789.1| - 0.029 13.3 9.8 0.13 11.1 0.6 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein COG2 PF06148.11 gi|145591787|ref|YP_001153789.1| - 0.043 13.9 8.8 5.3 7.1 0.6 4.5 2 1 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_27 PF13514.6 gi|145591787|ref|YP_001153789.1| - 0.054 13.1 1.3 3.7 7.1 0.1 2.8 1 1 2 3 3 3 0 AAA domain DegS PF05384.11 gi|145591787|ref|YP_001153789.1| - 0.073 12.6 6.5 3.9 7.0 0.5 3.9 1 1 1 3 3 3 0 Sensor protein DegS CheZ PF04344.13 gi|145591787|ref|YP_001153789.1| - 0.16 11.8 4.6 0.12 12.3 0.7 2.5 3 0 0 3 3 3 0 Chemotaxis phosphatase, CheZ Laminin_II PF06009.12 gi|145591787|ref|YP_001153789.1| - 0.18 11.8 13.5 5.3 7.0 1.3 4.4 2 1 2 4 4 4 0 Laminin Domain II Mating_N PF12731.7 gi|145591787|ref|YP_001153789.1| - 0.28 11.3 3.3 2.2 8.4 0.1 3.2 3 0 0 3 3 3 0 Mating-type protein beta 1 FlaC_arch PF05377.11 gi|145591787|ref|YP_001153789.1| - 0.33 11.4 4.1 5.5 7.5 0.3 3.9 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) LXG PF04740.12 gi|145591787|ref|YP_001153789.1| - 0.34 10.6 5.6 0.93 9.2 1.2 2.7 2 1 0 2 2 2 0 LXG domain of WXG superfamily DUF883 PF05957.13 gi|145591787|ref|YP_001153789.1| - 0.68 10.6 0.1 0.68 10.6 0.1 4.4 3 1 2 5 5 4 0 Bacterial protein of unknown function (DUF883) IFT20 PF14931.6 gi|145591787|ref|YP_001153789.1| - 0.68 10.1 4.6 1.3 9.2 0.4 3.0 2 1 1 3 3 3 0 Intraflagellar transport complex B, subunit 20 DASH_Duo1 PF08651.10 gi|145591787|ref|YP_001153789.1| - 0.7 9.7 10.9 7.6 6.4 0.4 4.4 4 1 1 5 5 5 0 DASH complex subunit Duo1 Vps5 PF09325.10 gi|145591787|ref|YP_001153789.1| - 0.72 9.4 7.7 0.1 12.1 2.7 2.2 2 1 0 2 2 2 0 Vps5 C terminal like Viral_P18 PF04521.13 gi|145591787|ref|YP_001153789.1| - 0.78 9.5 2.8 19 5.1 0.1 3.3 3 1 1 4 4 4 0 ssRNA positive strand viral 18kD cysteine rich protein APG17 PF04108.12 gi|145591787|ref|YP_001153789.1| - 0.79 8.8 13.9 0.088 11.9 2.5 3.0 2 2 2 4 4 4 0 Autophagy protein Apg17 DUF1664 PF07889.12 gi|145591787|ref|YP_001153789.1| - 0.96 9.5 7.1 1.1 9.3 0.8 3.6 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) DUF2802 PF10975.8 gi|145591787|ref|YP_001153789.1| - 1.2 9.3 4.4 13 6.0 0.0 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) DUF5082 PF16888.5 gi|145591787|ref|YP_001153789.1| - 1.6 9.1 10.4 6.3 7.1 0.1 3.7 2 1 2 4 4 4 0 Domain of unknown function (DUF5082) BLOC1_2 PF10046.9 gi|145591787|ref|YP_001153789.1| - 2.3 8.6 12.1 5.1 7.5 0.6 4.8 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|145591787|ref|YP_001153789.1| - 3 7.7 8.1 1.6 8.6 0.3 3.7 2 1 2 4 4 4 0 Sec34-like family Noelin-1 PF12308.8 gi|145591787|ref|YP_001153789.1| - 3.6 7.6 6.5 2.3 8.2 0.1 3.5 3 3 1 4 4 4 0 Neurogenesis glycoprotein Snapin_Pallidin PF14712.6 gi|145591787|ref|YP_001153789.1| - 4.2 7.8 9.0 6.1 7.3 0.2 3.9 3 1 1 4 4 4 0 Snapin/Pallidin DUF948 PF06103.11 gi|145591787|ref|YP_001153789.1| - 4.5 7.6 16.0 0.25 11.6 0.4 5.1 2 1 4 7 7 6 0 Bacterial protein of unknown function (DUF948) TPR_2 PF07719.17 gi|145591788|ref|YP_001153790.1| - 0.001 19.0 0.7 0.001 19.0 0.7 2.8 2 0 0 2 2 2 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|145591788|ref|YP_001153790.1| - 0.0011 19.1 1.4 0.0022 18.2 0.3 2.1 2 0 0 2 2 1 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.6 gi|145591788|ref|YP_001153790.1| - 0.002 18.7 0.7 0.26 12.0 0.3 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat AAA_22 PF13401.6 gi|145591788|ref|YP_001153790.1| - 0.0026 18.0 0.0 0.0088 16.3 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591788|ref|YP_001153790.1| - 0.0027 18.1 0.2 0.01 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|145591788|ref|YP_001153790.1| - 0.0052 16.5 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|145591788|ref|YP_001153790.1| - 0.0088 16.6 0.0 0.017 15.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|145591788|ref|YP_001153790.1| - 0.0096 16.5 0.0 0.02 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|145591788|ref|YP_001153790.1| - 0.019 14.9 0.0 0.042 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Paf67 PF10255.9 gi|145591788|ref|YP_001153790.1| - 0.034 13.2 0.1 0.05 12.6 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 TPR_7 PF13176.6 gi|145591788|ref|YP_001153790.1| - 0.037 14.0 1.0 0.037 14.0 1.0 2.9 3 0 0 3 3 3 0 Tetratricopeptide repeat AAA_7 PF12775.7 gi|145591788|ref|YP_001153790.1| - 0.055 13.0 0.0 0.091 12.3 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Sec16_C PF12931.7 gi|145591788|ref|YP_001153790.1| - 0.069 12.8 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Sec23-binding domain of Sec16 Sigma54_activ_2 PF14532.6 gi|145591788|ref|YP_001153790.1| - 0.073 13.2 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain Cytidylate_kin PF02224.18 gi|145591788|ref|YP_001153790.1| - 0.075 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Cytidylate kinase TPR_12 PF13424.6 gi|145591788|ref|YP_001153790.1| - 0.089 13.1 0.5 0.089 13.1 0.5 3.0 3 0 0 3 3 3 0 Tetratricopeptide repeat AAA_25 PF13481.6 gi|145591788|ref|YP_001153790.1| - 0.16 11.5 0.0 0.53 9.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain TPR_8 PF13181.6 gi|145591788|ref|YP_001153790.1| - 0.32 11.3 3.4 0.21 11.9 0.3 2.4 2 0 0 2 2 1 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|145591788|ref|YP_001153790.1| - 0.36 10.7 3.0 0.27 11.1 0.4 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|145591788|ref|YP_001153790.1| - 1 9.3 3.4 1.2 9.2 0.7 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_L40e PF01020.17 gi|145591789|ref|YP_001153791.1| - 5.5e-09 35.8 6.6 6.3e-09 35.6 6.6 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DUF35_N PF12172.8 gi|145591789|ref|YP_001153791.1| - 0.00033 20.5 0.9 0.00037 20.3 0.9 1.1 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_2 PF13240.6 gi|145591789|ref|YP_001153791.1| - 0.00081 19.0 3.7 0.0012 18.5 3.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|145591789|ref|YP_001153791.1| - 0.0021 17.4 3.6 0.0027 17.0 3.6 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|145591789|ref|YP_001153791.1| - 0.0021 18.1 2.1 0.0025 17.8 2.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|145591789|ref|YP_001153791.1| - 0.019 15.0 0.5 0.02 14.9 0.5 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|145591789|ref|YP_001153791.1| - 0.75 9.6 4.9 1.3 8.8 4.9 1.4 1 1 0 1 1 1 0 Rubredoxin metal binding domain DHHC PF01529.20 gi|145591789|ref|YP_001153791.1| - 0.78 9.9 4.0 0.89 9.7 4.0 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-RRN7 PF11781.8 gi|145591789|ref|YP_001153791.1| - 2.2 8.0 7.7 6.4 6.6 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 HypA PF01155.19 gi|145591790|ref|YP_001153792.1| - 0.00035 20.6 0.1 0.00037 20.5 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|145591790|ref|YP_001153792.1| - 0.00053 20.0 1.0 0.00089 19.3 1.0 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-C2HC5 PF06221.13 gi|145591790|ref|YP_001153792.1| - 0.0095 15.9 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|145591790|ref|YP_001153792.1| - 0.016 15.2 3.3 0.037 14.0 3.3 1.6 1 1 1 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|145591790|ref|YP_001153792.1| - 0.027 14.0 4.1 0.97 9.0 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|145591790|ref|YP_001153792.1| - 0.057 13.4 3.6 0.88 9.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|145591790|ref|YP_001153792.1| - 0.058 13.4 1.9 0.095 12.7 1.9 1.4 1 0 0 1 1 1 0 Adenylate kinase, active site lid zf-C2H2 PF00096.26 gi|145591790|ref|YP_001153792.1| - 0.069 13.6 0.8 0.069 13.6 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.18 gi|145591790|ref|YP_001153792.1| - 0.2 11.6 2.4 8.4 6.3 0.1 2.5 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|145591790|ref|YP_001153792.1| - 0.34 11.0 5.3 0.86 9.7 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|145591790|ref|YP_001153792.1| - 0.89 9.1 5.8 6.6 6.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|145591790|ref|YP_001153792.1| - 5.9 6.7 6.5 8 6.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain RTP PF02334.16 gi|145591791|ref|YP_001153793.1| - 0.14 12.8 0.0 0.17 12.6 0.0 1.2 1 0 0 1 1 1 0 Replication terminator protein PixA PF12306.8 gi|145591791|ref|YP_001153793.1| - 0.18 12.0 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Inclusion body protein Penicil_amidase PF01804.18 gi|145591792|ref|YP_001153794.1| - 7.7e-158 527.5 0.0 9e-158 527.2 0.0 1.0 1 0 0 1 1 1 1 Penicillin amidase DUF5518 PF17647.1 gi|145591793|ref|YP_001153795.1| - 0.014 15.6 11.1 0.019 15.1 11.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5518) KdgT PF03812.13 gi|145591793|ref|YP_001153795.1| - 0.016 14.5 1.6 0.019 14.3 1.6 1.1 1 0 0 1 1 1 0 2-keto-3-deoxygluconate permease Bmp PF02608.14 gi|145591794|ref|YP_001153796.1| - 2.3e-54 184.4 0.5 3.7e-54 183.8 0.5 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|145591794|ref|YP_001153796.1| - 0.001 18.7 3.7 0.0014 18.2 0.5 2.3 2 1 0 2 2 2 1 Periplasmic binding protein domain Wzz PF02706.15 gi|145591794|ref|YP_001153796.1| - 0.06 13.7 0.3 0.12 12.6 0.3 1.5 1 0 0 1 1 1 0 Chain length determinant protein DUF2749 PF10907.8 gi|145591794|ref|YP_001153796.1| - 0.063 13.4 1.7 0.14 12.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) Pilin_N PF07790.11 gi|145591794|ref|YP_001153796.1| - 0.075 14.0 0.2 0.22 12.5 0.2 1.8 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF929 PF06053.11 gi|145591794|ref|YP_001153796.1| - 0.32 10.3 1.3 9.9 5.4 0.6 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF929) ABC_tran PF00005.27 gi|145591795|ref|YP_001153797.1| - 1.7e-40 138.7 0.0 6.3e-31 107.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|145591795|ref|YP_001153797.1| - 7.8e-08 32.5 0.1 0.006 16.4 0.1 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145591795|ref|YP_001153797.1| - 0.012 15.3 0.0 0.053 13.3 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|145591795|ref|YP_001153797.1| - 0.017 14.8 0.1 0.076 12.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|145591795|ref|YP_001153797.1| - 0.029 14.9 0.1 0.051 14.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|145591795|ref|YP_001153797.1| - 0.037 13.8 0.0 0.34 10.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 gi|145591795|ref|YP_001153797.1| - 0.039 14.0 0.0 1.1 9.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|145591795|ref|YP_001153797.1| - 0.059 13.4 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE eRF1_3 PF03465.15 gi|145591795|ref|YP_001153797.1| - 0.095 13.2 0.0 0.55 10.7 0.0 2.1 2 0 0 2 2 2 0 eRF1 domain 3 DLIC PF05783.11 gi|145591795|ref|YP_001153797.1| - 0.099 11.5 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NACHT PF05729.12 gi|145591795|ref|YP_001153797.1| - 0.1 12.5 0.1 0.22 11.4 0.1 1.5 1 0 0 1 1 1 0 NACHT domain SMC_N PF02463.19 gi|145591795|ref|YP_001153797.1| - 0.12 11.8 0.0 14 5.1 0.0 3.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|145591795|ref|YP_001153797.1| - 0.15 12.0 0.1 0.41 10.5 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_13 PF13166.6 gi|145591795|ref|YP_001153797.1| - 0.36 9.4 0.0 0.5 8.9 0.0 1.1 1 0 0 1 1 1 0 AAA domain BPD_transp_2 PF02653.16 gi|145591796|ref|YP_001153798.1| - 6.6e-38 130.4 27.0 6.6e-38 130.4 27.0 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|145591797|ref|YP_001153799.1| - 1.9e-39 135.5 29.7 2.3e-39 135.2 29.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF2613 PF11021.8 gi|145591797|ref|YP_001153799.1| - 7.1 6.8 9.5 1.9 8.6 0.7 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) HSP20 PF00011.21 gi|145591798|ref|YP_001153800.1| - 5.8e-11 42.5 0.1 1.1e-09 38.4 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|145591798|ref|YP_001153800.1| - 2.6e-09 36.5 0.0 4.1e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HATPase_c PF02518.26 gi|145591798|ref|YP_001153800.1| - 0.1 13.1 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF2122 PF09895.9 gi|145591799|ref|YP_001153801.1| - 3.1e-25 88.6 0.1 4e-25 88.3 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) PNP_UDP_1 PF01048.20 gi|145591801|ref|YP_001153803.1| - 1.3e-39 135.8 0.3 1.5e-39 135.7 0.3 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily LAB_N PF07578.11 gi|145591802|ref|YP_001153804.1| - 0.0043 17.1 1.2 0.0048 17.0 1.2 1.3 1 1 0 1 1 1 1 Lipid A Biosynthesis N-terminal domain MtN3_slv PF03083.16 gi|145591802|ref|YP_001153804.1| - 0.0068 16.4 2.7 0.0079 16.2 2.5 1.3 1 1 0 1 1 1 1 Sugar efflux transporter for intercellular exchange Imp-YgjV PF10688.9 gi|145591802|ref|YP_001153804.1| - 0.22 11.3 6.5 1.3 8.9 6.5 1.9 1 1 0 1 1 1 0 Bacterial inner membrane protein GHMP_kinases_N PF00288.26 gi|145591803|ref|YP_001153805.1| - 5.4e-12 45.8 1.0 9.9e-12 44.9 1.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|145591803|ref|YP_001153805.1| - 9.5e-07 29.1 0.3 2.4e-06 27.8 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|145591803|ref|YP_001153805.1| - 0.00032 20.2 0.0 0.00082 18.9 0.0 1.7 1 0 0 1 1 1 1 Galactokinase galactose-binding signature RL10P_insert PF17777.1 gi|145591804|ref|YP_001153806.1| - 1e-21 76.7 0.1 2.1e-21 75.7 0.1 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_L10 PF00466.20 gi|145591804|ref|YP_001153806.1| - 6.8e-19 67.9 0.0 2.3e-17 63.0 0.0 2.3 2 0 0 2 2 2 1 Ribosomal protein L10 DUF1440 PF07274.12 gi|145591804|ref|YP_001153806.1| - 0.024 15.0 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1440) Ribosomal_60s PF00428.19 gi|145591804|ref|YP_001153806.1| - 8.3 7.1 20.3 9.4 6.9 17.8 2.5 3 1 0 3 3 3 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|145591805|ref|YP_001153807.1| - 3.4e-36 124.9 0.0 4.2e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.19 gi|145591806|ref|YP_001153808.1| - 5.9e-14 52.3 0.0 9.6e-14 51.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Spt5-NGN PF03439.13 gi|145591807|ref|YP_001153809.1| - 6.9e-14 51.5 1.6 8.8e-14 51.2 0.9 1.6 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|145591807|ref|YP_001153809.1| - 0.1 12.6 2.8 0.22 11.5 2.8 1.6 1 0 0 1 1 1 0 KOW motif SRP54 PF00448.22 gi|145591809|ref|YP_001153811.1| - 7.9e-66 221.4 0.0 1.1e-65 221.0 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|145591809|ref|YP_001153811.1| - 1.6e-08 34.6 3.3 3.9e-08 33.4 3.3 1.7 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|145591809|ref|YP_001153811.1| - 4e-06 26.9 0.0 1.9e-05 24.7 0.0 2.1 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|145591809|ref|YP_001153811.1| - 5.7e-05 22.9 0.1 0.00013 21.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145591809|ref|YP_001153811.1| - 9.1e-05 22.4 0.2 0.00076 19.4 0.1 2.4 1 1 1 2 2 2 1 NTPase AAA_16 PF13191.6 gi|145591809|ref|YP_001153811.1| - 0.00014 22.3 0.0 0.00025 21.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|145591809|ref|YP_001153811.1| - 0.00035 20.8 0.1 0.00065 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145591809|ref|YP_001153811.1| - 0.0005 20.4 0.0 0.0013 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|145591809|ref|YP_001153811.1| - 0.0022 17.3 0.1 0.0056 16.0 0.0 1.7 2 1 0 2 2 2 1 Zeta toxin VirC1 PF07015.11 gi|145591809|ref|YP_001153811.1| - 0.0024 17.2 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein MeaB PF03308.16 gi|145591809|ref|YP_001153811.1| - 0.0027 16.8 0.4 0.036 13.0 0.0 2.7 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|145591809|ref|YP_001153811.1| - 0.0028 17.3 0.0 0.013 15.1 0.0 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|145591809|ref|YP_001153811.1| - 0.004 17.2 0.0 0.019 15.0 0.0 2.1 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|145591809|ref|YP_001153811.1| - 0.0043 17.2 0.0 0.0082 16.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|145591809|ref|YP_001153811.1| - 0.0045 17.3 0.0 0.0075 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|145591809|ref|YP_001153811.1| - 0.0049 17.3 0.1 0.015 15.7 0.0 1.8 2 1 0 2 2 1 1 AAA domain AAA PF00004.29 gi|145591809|ref|YP_001153811.1| - 0.0055 17.1 0.0 0.029 14.8 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_31 PF13614.6 gi|145591809|ref|YP_001153811.1| - 0.026 14.4 0.0 0.11 12.4 0.0 2.0 3 0 0 3 3 2 0 AAA domain NACHT PF05729.12 gi|145591809|ref|YP_001153811.1| - 0.03 14.2 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|145591809|ref|YP_001153811.1| - 0.031 14.8 0.0 0.07 13.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter APS_kinase PF01583.20 gi|145591809|ref|YP_001153811.1| - 0.032 14.1 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.14 gi|145591809|ref|YP_001153811.1| - 0.037 13.9 0.0 0.083 12.8 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MipZ PF09140.11 gi|145591809|ref|YP_001153811.1| - 0.043 13.1 0.6 15 4.8 0.1 3.2 1 1 2 3 3 3 0 ATPase MipZ AAA_24 PF13479.6 gi|145591809|ref|YP_001153811.1| - 0.044 13.5 0.0 0.097 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|145591809|ref|YP_001153811.1| - 0.054 13.5 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_23 PF13476.6 gi|145591809|ref|YP_001153811.1| - 0.058 13.9 0.0 0.084 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain GTP_EFTU PF00009.27 gi|145591809|ref|YP_001153811.1| - 0.063 12.8 0.4 0.19 11.2 0.0 2.0 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain AAA_7 PF12775.7 gi|145591809|ref|YP_001153811.1| - 0.071 12.6 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region Thymidylate_kin PF02223.17 gi|145591809|ref|YP_001153811.1| - 0.094 12.4 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Thymidylate kinase ResIII PF04851.15 gi|145591809|ref|YP_001153811.1| - 0.13 12.3 0.0 0.45 10.5 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TrwB_AAD_bind PF10412.9 gi|145591809|ref|YP_001153811.1| - 0.14 11.0 0.0 0.39 9.6 0.0 1.6 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain KdpD PF02702.17 gi|145591809|ref|YP_001153811.1| - 0.24 10.8 2.3 2.3 7.6 0.0 2.6 3 0 0 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain Prefoldin PF02996.17 gi|145591810|ref|YP_001153812.1| - 3.1e-22 78.7 0.2 5.4e-22 78.0 0.1 1.4 1 1 0 1 1 1 1 Prefoldin subunit Seryl_tRNA_N PF02403.22 gi|145591810|ref|YP_001153812.1| - 0.0015 18.8 1.5 0.5 10.6 0.1 2.1 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain ZapB PF06005.12 gi|145591810|ref|YP_001153812.1| - 0.0079 16.6 5.2 0.26 11.8 0.4 2.2 2 0 0 2 2 2 2 Cell division protein ZapB RmuC PF02646.16 gi|145591810|ref|YP_001153812.1| - 0.012 14.7 2.2 0.56 9.3 0.5 2.0 2 0 0 2 2 2 0 RmuC family BLOC1_2 PF10046.9 gi|145591810|ref|YP_001153812.1| - 0.015 15.6 3.0 3.3 8.1 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF615 PF04751.14 gi|145591810|ref|YP_001153812.1| - 0.019 14.9 0.9 0.041 13.9 0.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF615) Prefoldin_2 PF01920.20 gi|145591810|ref|YP_001153812.1| - 0.034 14.1 4.3 1.9 8.5 0.5 2.3 2 0 0 2 2 2 0 Prefoldin subunit DUF4446 PF14584.6 gi|145591810|ref|YP_001153812.1| - 0.063 13.3 0.1 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Sec34 PF04136.15 gi|145591810|ref|YP_001153812.1| - 0.072 13.0 0.7 1.4 8.8 0.2 2.1 2 0 0 2 2 2 0 Sec34-like family CdvA PF18822.1 gi|145591810|ref|YP_001153812.1| - 0.14 12.0 3.6 0.79 9.6 0.7 2.2 2 0 0 2 2 2 0 CdvA-like coiled-coil domain DUF4164 PF13747.6 gi|145591810|ref|YP_001153812.1| - 0.14 12.4 5.4 3 8.2 0.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) DUF3450 PF11932.8 gi|145591810|ref|YP_001153812.1| - 0.17 11.2 3.8 3.4 6.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DivIVA PF05103.13 gi|145591810|ref|YP_001153812.1| - 0.2 11.7 3.0 2.9 8.0 0.1 2.1 2 0 0 2 2 2 0 DivIVA protein IFT57 PF10498.9 gi|145591810|ref|YP_001153812.1| - 0.31 10.0 2.1 6.4 5.6 0.2 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Tektin PF03148.14 gi|145591810|ref|YP_001153812.1| - 0.35 9.6 5.6 0.27 9.9 0.6 2.0 2 0 0 2 2 2 0 Tektin family APG6_N PF17675.1 gi|145591810|ref|YP_001153812.1| - 0.35 11.4 7.7 1.1 9.8 0.9 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region NPV_P10 PF05531.12 gi|145591810|ref|YP_001153812.1| - 0.45 11.0 1.9 2.6 8.6 0.4 2.1 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein TMF_TATA_bd PF12325.8 gi|145591810|ref|YP_001153812.1| - 0.76 10.0 6.8 3.6 7.9 0.7 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Rx_N PF18052.1 gi|145591810|ref|YP_001153812.1| - 1.2 9.5 4.3 6 7.2 0.3 2.3 2 1 0 2 2 2 0 Rx N-terminal domain Ribosomal_L18A PF01775.17 gi|145591811|ref|YP_001153813.1| - 1.5e-07 31.5 0.2 2.5e-07 30.8 0.2 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|145591812|ref|YP_001153814.1| - 1.4e-60 204.1 1.0 1.6e-60 203.9 1.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|145591813|ref|YP_001153815.1| - 1.5e-14 54.0 0.5 1.9e-14 53.7 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Radical_SAM PF04055.21 gi|145591814|ref|YP_001153816.1| - 5.7e-16 59.3 0.0 1.1e-15 58.4 0.0 1.5 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145591814|ref|YP_001153816.1| - 1.3e-06 28.7 0.0 2.2e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145591814|ref|YP_001153816.1| - 0.00012 22.1 0.0 0.00025 21.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain HHH PF00633.23 gi|145591815|ref|YP_001153817.1| - 0.0014 18.4 0.0 0.082 12.8 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif tRNA-synt_1b PF00579.25 gi|145591816|ref|YP_001153818.1| - 1.4e-30 106.6 0.0 3e-30 105.6 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.18 gi|145591816|ref|YP_001153818.1| - 0.065 12.1 0.0 1.8 7.4 0.0 2.1 2 0 0 2 2 2 0 tRNA synthetases class I (K) TRAM PF01938.20 gi|145591817|ref|YP_001153819.1| - 9.1e-14 51.2 5.1 1.1e-13 51.0 5.1 1.1 1 0 0 1 1 1 1 TRAM domain CSD2 PF17876.1 gi|145591817|ref|YP_001153819.1| - 0.0027 17.8 6.3 0.05 13.8 0.8 2.1 1 1 1 2 2 2 2 Cold shock domain CusF_Ec PF11604.8 gi|145591817|ref|YP_001153819.1| - 0.0079 16.1 0.3 0.61 10.1 0.0 2.1 2 0 0 2 2 2 2 Copper binding periplasmic protein CusF PIN_9 PF18477.1 gi|145591818|ref|YP_001153820.1| - 4.3e-12 46.4 0.8 5.7e-12 46.0 0.8 1.1 1 0 0 1 1 1 1 PIN like domain PIN PF01850.21 gi|145591818|ref|YP_001153820.1| - 3.5e-08 34.0 0.8 4.4e-05 24.0 0.8 2.1 1 1 0 1 1 1 1 PIN domain PIN_4 PF13638.6 gi|145591818|ref|YP_001153820.1| - 1.6e-06 28.4 0.9 0.00065 20.0 0.7 2.1 1 1 1 2 2 2 2 PIN domain PIN_5 PF08745.11 gi|145591818|ref|YP_001153820.1| - 0.0013 18.2 3.8 0.021 14.3 0.3 2.3 1 1 1 2 2 2 2 PINc domain ribonuclease DUF5615 PF18480.1 gi|145591818|ref|YP_001153820.1| - 0.0023 17.6 0.0 0.0057 16.4 0.0 1.7 2 1 0 2 2 2 1 Domain of unknown function (DUF5615) PIN_6 PF17146.4 gi|145591818|ref|YP_001153820.1| - 0.031 14.8 0.2 0.041 14.4 0.2 1.3 1 0 0 1 1 1 0 PIN domain of ribonuclease PIN_3 PF13470.6 gi|145591818|ref|YP_001153820.1| - 0.077 13.8 0.3 0.25 12.1 0.3 1.8 1 1 0 1 1 1 0 PIN domain Mut7-C PF01927.16 gi|145591818|ref|YP_001153820.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 1 0 1 1 1 0 Mut7-C RNAse domain AAA_21 PF13304.6 gi|145591819|ref|YP_001153821.1| - 0.0056 16.5 0.0 2.1 8.0 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system STAS_2 PF13466.6 gi|145591819|ref|YP_001153821.1| - 0.0068 16.7 1.3 0.022 15.1 0.5 2.1 2 0 0 2 2 2 1 STAS domain AAA_16 PF13191.6 gi|145591819|ref|YP_001153821.1| - 0.011 16.1 0.1 4.2 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|145591819|ref|YP_001153821.1| - 0.018 15.4 0.0 0.96 9.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|145591819|ref|YP_001153821.1| - 0.024 14.9 0.1 4.2 7.7 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|145591819|ref|YP_001153821.1| - 0.043 13.5 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|145591819|ref|YP_001153821.1| - 0.086 12.6 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|145591819|ref|YP_001153821.1| - 0.13 11.8 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain HIT PF01230.23 gi|145591821|ref|YP_001153823.1| - 1e-12 48.6 0.0 1.5e-12 48.1 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|145591821|ref|YP_001153823.1| - 1.1e-08 35.0 0.0 1.6e-08 34.5 0.0 1.3 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|145591821|ref|YP_001153823.1| - 4.1e-05 24.0 0.0 7.5e-05 23.2 0.0 1.5 1 1 1 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding NTP_transferase PF00483.23 gi|145591824|ref|YP_001153826.1| - 2.3e-40 138.7 0.0 2.8e-40 138.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|145591824|ref|YP_001153826.1| - 6.4e-13 47.9 10.8 5.8e-08 32.1 0.6 4.0 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|145591824|ref|YP_001153826.1| - 5.9e-09 36.5 0.0 8.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|145591824|ref|YP_001153826.1| - 0.003 17.3 0.3 0.003 17.3 0.3 4.1 3 1 2 5 5 5 1 Hexapeptide repeat of succinyl-transferase DUF4954 PF16314.5 gi|145591824|ref|YP_001153826.1| - 0.019 13.2 0.0 0.026 12.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) BtpA PF03437.15 gi|145591825|ref|YP_001153827.1| - 7.3e-52 176.3 0.0 1.1e-51 175.8 0.0 1.3 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|145591825|ref|YP_001153827.1| - 0.017 13.9 0.0 0.13 11.1 0.0 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Nre_C PF04895.12 gi|145591825|ref|YP_001153827.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Archaeal Nre, C-terminal Peptidase_M48 PF01435.18 gi|145591828|ref|YP_001153830.1| - 6.8e-19 68.4 0.1 9.8e-19 67.9 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|145591828|ref|YP_001153830.1| - 1.5e-05 24.4 3.4 9.3e-05 21.8 0.3 2.6 2 1 1 3 3 3 2 BlaR1 peptidase M56 DUF3253 PF11625.8 gi|145591829|ref|YP_001153831.1| - 0.097 12.9 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) DUF87 PF01935.17 gi|145591830|ref|YP_001153832.1| - 5.6e-08 33.2 0.0 9e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_22 PF13401.6 gi|145591830|ref|YP_001153832.1| - 7.2e-06 26.3 0.2 0.16 12.2 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|145591830|ref|YP_001153832.1| - 0.00024 21.1 0.2 0.26 11.3 0.0 2.5 2 1 0 2 2 2 2 AAA domain TrwB_AAD_bind PF10412.9 gi|145591830|ref|YP_001153832.1| - 0.053 12.4 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ATPase_2 PF01637.18 gi|145591830|ref|YP_001153832.1| - 0.057 13.3 0.2 0.47 10.3 0.0 2.2 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea CobU PF02283.16 gi|145591830|ref|YP_001153832.1| - 0.18 11.4 0.1 0.93 9.0 0.1 2.0 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase PDDEXK_10 PF07788.11 gi|145591831|ref|YP_001153833.1| - 1.5e-30 104.9 0.8 1.5e-30 104.9 0.8 1.8 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF3782 PF12644.7 gi|145591831|ref|YP_001153833.1| - 1.2e-23 83.0 16.4 2e-20 72.7 16.4 3.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) ScsC_N PF18312.1 gi|145591831|ref|YP_001153833.1| - 6.4e-05 22.7 7.3 0.021 14.6 1.6 3.3 2 1 1 3 3 3 2 Copper resistance protein ScsC N-terminal domain HAD PF12710.7 gi|145591831|ref|YP_001153833.1| - 0.0038 17.6 2.4 0.0067 16.8 1.7 1.9 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase DUF1640 PF07798.11 gi|145591831|ref|YP_001153833.1| - 0.0079 16.3 18.1 0.073 13.1 12.7 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1640) SIMPL PF04402.14 gi|145591831|ref|YP_001153833.1| - 0.039 14.4 2.2 0.17 12.3 2.0 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF541) CCDC84 PF14968.6 gi|145591831|ref|YP_001153833.1| - 0.54 9.8 3.9 1.4 8.5 4.1 1.3 1 1 1 2 2 2 0 Coiled coil protein 84 CppA_C PF14507.6 gi|145591831|ref|YP_001153833.1| - 0.58 10.9 6.1 2.6 8.8 1.7 2.5 1 1 1 2 2 2 0 CppA C-terminal T6SS_VipA PF05591.12 gi|145591831|ref|YP_001153833.1| - 1.7 8.5 13.6 5.4 6.8 2.0 2.7 1 1 1 2 2 2 0 Type VI secretion system, VipA, VC_A0107 or Hcp2 HTH_57 PF18679.1 gi|145591831|ref|YP_001153833.1| - 2.1 8.7 7.0 5.6 7.3 1.8 2.7 1 1 1 2 2 2 0 ThcOx helix turn helix domain SPACA9 PF15120.6 gi|145591831|ref|YP_001153833.1| - 2.4 7.9 7.2 5 6.9 1.2 2.3 1 1 1 2 2 2 0 Sperm acrosome-associated protein 9 Seadorna_VP6 PF07407.11 gi|145591831|ref|YP_001153833.1| - 8.7 5.2 6.7 13 4.6 6.7 1.3 1 0 0 1 1 1 0 Seadornavirus VP6 protein DrrA_P4M PF14860.6 gi|145591831|ref|YP_001153833.1| - 9 6.2 11.1 15 5.5 1.2 3.4 1 1 1 3 3 3 0 DrrA phosphatidylinositol 4-phosphate binding domain FUSC PF04632.12 gi|145591831|ref|YP_001153833.1| - 9.8 4.6 7.5 14 4.1 7.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PaREP1 PF05942.11 gi|145591832|ref|YP_001153834.1| - 1.4e-29 102.3 3.5 2e-29 101.9 3.5 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family NPIP PF06409.11 gi|145591835|ref|YP_001153837.1| - 0.093 11.8 0.1 0.15 11.1 0.1 1.2 1 0 0 1 1 1 0 Nuclear pore complex interacting protein (NPIP) Glyco_hydro_99 PF16317.5 gi|145591836|ref|YP_001153838.1| - 5e-20 71.9 0.5 1.8e-19 70.1 0.5 1.9 1 1 0 1 1 1 1 Glycosyl hydrolase family 99 Glyco_tran_WbsX PF14307.6 gi|145591836|ref|YP_001153838.1| - 2.6e-12 46.9 0.0 1.4e-11 44.4 0.0 2.2 2 1 0 2 2 2 1 Glycosyltransferase WbsX IFT57 PF10498.9 gi|145591836|ref|YP_001153838.1| - 0.0017 17.4 0.2 0.003 16.6 0.2 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Golgin_A5 PF09787.9 gi|145591836|ref|YP_001153838.1| - 0.0042 16.6 5.4 0.0067 15.9 5.4 1.2 1 0 0 1 1 1 1 Golgin subfamily A member 5 FmrO PF07091.11 gi|145591836|ref|YP_001153838.1| - 0.033 13.7 0.6 0.072 12.6 0.3 1.8 2 0 0 2 2 2 0 Ribosomal RNA methyltransferase (FmrO) DUF3141 PF11339.8 gi|145591836|ref|YP_001153838.1| - 0.036 12.5 0.1 0.054 11.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3141) Fez1 PF06818.15 gi|145591836|ref|YP_001153838.1| - 0.054 13.9 7.7 0.096 13.1 7.7 1.3 1 0 0 1 1 1 0 Fez1 zf-C4H2 PF10146.9 gi|145591836|ref|YP_001153838.1| - 0.066 13.5 2.0 0.1 12.9 2.0 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein UPF0242 PF06785.11 gi|145591836|ref|YP_001153838.1| - 0.084 13.0 3.0 0.15 12.1 3.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF641 PF04859.12 gi|145591836|ref|YP_001153838.1| - 0.13 12.6 3.7 0.2 12.0 2.9 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) HMMR_N PF15905.5 gi|145591836|ref|YP_001153838.1| - 0.16 11.4 6.2 0.25 10.8 6.2 1.3 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal GAS PF13851.6 gi|145591836|ref|YP_001153838.1| - 0.18 11.1 6.1 0.34 10.2 6.1 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Lebercilin PF15619.6 gi|145591836|ref|YP_001153838.1| - 0.3 10.7 11.9 9.5 5.8 11.9 2.3 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease HCR PF07111.12 gi|145591836|ref|YP_001153838.1| - 0.37 8.8 14.0 0.52 8.3 14.0 1.1 1 0 0 1 1 1 0 Alpha helical coiled-coil rod protein (HCR) Atg14 PF10186.9 gi|145591836|ref|YP_001153838.1| - 0.49 9.4 4.6 0.78 8.8 4.6 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Tropomyosin_1 PF12718.7 gi|145591836|ref|YP_001153838.1| - 1.1 9.4 12.3 2 8.5 12.3 1.4 1 0 0 1 1 1 0 Tropomyosin like FUSC PF04632.12 gi|145591836|ref|YP_001153838.1| - 2.2 6.7 4.9 3.1 6.2 4.9 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family ERM PF00769.19 gi|145591836|ref|YP_001153838.1| - 5 6.9 14.0 8.3 6.1 14.0 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family GxGYxYP_N PF16216.5 gi|145591837|ref|YP_001153839.1| - 2e-24 87.0 0.0 3.9e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 GxGYxY sequence motif in domain of unknown function N-terminal GxGYxYP_C PF14323.6 gi|145591837|ref|YP_001153839.1| - 7.6e-19 68.5 0.3 2.7e-17 63.5 0.5 2.6 3 0 0 3 3 3 1 GxGYxYP putative glycoside hydrolase C-terminal domain DUF2007 PF09413.10 gi|145591837|ref|YP_001153839.1| - 0.1 12.8 0.4 0.31 11.2 0.4 1.9 1 0 0 1 1 1 0 Putative prokaryotic signal transducing protein Coprogen_oxidas PF01218.18 gi|145591839|ref|YP_001153841.1| - 0.041 12.6 0.0 0.082 11.6 0.0 1.5 1 0 0 1 1 1 0 Coproporphyrinogen III oxidase Herpes_glycop_D PF01537.17 gi|145591839|ref|YP_001153841.1| - 0.061 13.5 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus glycoprotein D/GG/GX domain Glyc_hyd_38C_2 PF18230.1 gi|145591840|ref|YP_001153842.1| - 0.033 14.3 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 38 C-terminal sub-domain Flu_M2 PF00599.17 gi|145591840|ref|YP_001153842.1| - 0.14 12.2 0.6 10 6.3 0.0 2.4 1 1 1 2 2 2 0 Influenza Matrix protein (M2) DUF1254 PF06863.12 gi|145591840|ref|YP_001153842.1| - 0.16 12.0 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1254) Metallophos PF00149.28 gi|145591842|ref|YP_001153844.1| - 3.7e-06 27.6 0.2 8.1e-06 26.5 0.2 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase MazE_antitoxin PF04014.18 gi|145591843|ref|YP_001153845.1| - 0.0045 16.9 0.6 0.017 15.0 0.6 1.9 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|145591843|ref|YP_001153845.1| - 0.038 14.0 0.1 0.069 13.1 0.0 1.5 2 0 0 2 2 2 0 MraZ protein, putative antitoxin-like PIN PF01850.21 gi|145591844|ref|YP_001153846.1| - 7.6e-12 45.8 0.0 1e-11 45.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain DUF2684 PF10885.8 gi|145591844|ref|YP_001153846.1| - 0.06 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2684) DUF3836 PF12930.7 gi|145591845|ref|YP_001153847.1| - 0.0068 16.2 0.8 0.0081 15.9 0.4 1.4 1 1 0 1 1 1 1 Family of unknown function (DUF3836) Peptidase_M48 PF01435.18 gi|145591846|ref|YP_001153848.1| - 2.5e-43 148.2 0.1 3.7e-43 147.6 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Bac_export_3 PF01313.19 gi|145591846|ref|YP_001153848.1| - 7.4 6.6 14.6 0.099 12.6 4.9 2.5 2 0 0 2 2 2 0 Bacterial export proteins, family 3 Lactamase_B_3 PF13483.6 gi|145591848|ref|YP_001153850.1| - 1.3e-32 112.9 0.1 1.8e-32 112.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|145591848|ref|YP_001153850.1| - 5.7e-18 65.2 0.0 7.7e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591848|ref|YP_001153850.1| - 6.3e-05 23.1 0.6 0.013 15.5 0.2 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Herpes_TK PF00693.18 gi|145591849|ref|YP_001153851.1| - 0.11 11.8 0.1 0.16 11.2 0.1 1.3 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus PhoU_div PF01865.16 gi|145591850|ref|YP_001153852.1| - 5.2e-18 65.2 9.4 6.2e-18 64.9 9.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 PhoU PF01895.19 gi|145591850|ref|YP_001153852.1| - 0.0047 17.3 5.2 0.0047 17.3 5.2 2.7 2 1 0 2 2 2 1 PhoU domain CRM1_C PF08767.11 gi|145591850|ref|YP_001153852.1| - 0.025 13.7 2.3 0.038 13.1 2.3 1.4 1 1 0 1 1 1 0 CRM1 C terminal MitMem_reg PF13012.6 gi|145591850|ref|YP_001153852.1| - 0.033 14.6 1.8 0.11 12.9 1.8 2.0 1 1 0 1 1 1 0 Maintenance of mitochondrial structure and function SesA PF17107.5 gi|145591850|ref|YP_001153852.1| - 0.039 14.1 2.4 0.062 13.5 0.0 2.4 3 0 0 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases LXG PF04740.12 gi|145591850|ref|YP_001153852.1| - 0.19 11.4 3.8 0.13 12.0 1.2 2.1 2 2 0 2 2 2 0 LXG domain of WXG superfamily YtzH PF14165.6 gi|145591850|ref|YP_001153852.1| - 0.28 11.6 4.3 0.73 10.3 0.8 2.7 2 1 0 2 2 2 0 YtzH-like protein Fib_alpha PF08702.10 gi|145591850|ref|YP_001153852.1| - 1 9.6 4.4 1.9 8.7 0.8 2.3 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family HisKA PF00512.25 gi|145591850|ref|YP_001153852.1| - 4.1 7.5 8.3 9 6.4 2.4 3.4 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain Radical_SAM PF04055.21 gi|145591851|ref|YP_001153853.1| - 9.7e-18 65.1 0.2 1.3e-16 61.5 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily TF_Zn_Ribbon PF08271.12 gi|145591851|ref|YP_001153853.1| - 0.00077 18.9 2.3 0.0063 16.0 2.4 2.3 1 1 0 1 1 1 1 TFIIB zinc-binding Fer4_12 PF13353.6 gi|145591851|ref|YP_001153853.1| - 0.0055 17.0 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain DZR PF12773.7 gi|145591851|ref|YP_001153853.1| - 0.054 13.5 0.0 0.054 13.5 0.0 2.9 3 0 0 3 3 3 0 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|145591851|ref|YP_001153853.1| - 0.089 12.7 4.0 1.5 8.8 0.5 2.8 2 0 0 2 2 2 0 SprT-like zinc ribbon domain ACT_5 PF13710.6 gi|145591851|ref|YP_001153853.1| - 0.093 12.6 0.0 0.26 11.2 0.0 1.7 1 0 0 1 1 1 0 ACT domain A2L_zn_ribbon PF08792.10 gi|145591851|ref|YP_001153853.1| - 0.14 11.9 2.8 12 5.8 0.1 3.3 3 0 0 3 3 3 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145591851|ref|YP_001153853.1| - 0.16 12.1 8.3 6.1 7.1 0.0 3.7 4 0 0 4 4 4 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145591851|ref|YP_001153853.1| - 0.35 10.3 6.7 0.73 9.3 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|145591851|ref|YP_001153853.1| - 2.1 8.5 5.4 4.4 7.5 0.1 3.0 2 1 1 3 3 3 0 Ribosomal L37ae protein family NOB1_Zn_bind PF08772.11 gi|145591851|ref|YP_001153853.1| - 3.3 8.0 5.6 16 5.7 0.1 2.7 2 1 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like TFIIB PF00382.19 gi|145591852|ref|YP_001153854.1| - 1e-05 25.4 0.9 1.6e-05 24.8 0.2 1.6 1 1 1 2 2 2 1 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|145591852|ref|YP_001153854.1| - 2.5e-05 23.7 1.0 4e-05 23.0 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|145591852|ref|YP_001153854.1| - 0.0045 16.6 6.3 0.018 14.8 6.3 1.9 1 1 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|145591852|ref|YP_001153854.1| - 0.0074 16.4 0.5 3.1 8.0 0.0 2.4 2 0 0 2 2 2 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145591852|ref|YP_001153854.1| - 0.013 14.9 2.2 0.022 14.2 2.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|145591852|ref|YP_001153854.1| - 0.021 14.8 0.6 0.035 14.1 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|145591852|ref|YP_001153854.1| - 0.038 14.0 1.5 0.085 12.9 1.5 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|145591852|ref|YP_001153854.1| - 0.051 13.5 1.4 0.098 12.6 1.4 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DUF4503 PF14951.6 gi|145591852|ref|YP_001153854.1| - 0.079 11.4 1.5 0.2 10.1 1.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4503) zf-Mss51 PF13824.6 gi|145591852|ref|YP_001153854.1| - 0.088 12.9 1.8 0.14 12.2 1.8 1.3 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.8 gi|145591852|ref|YP_001153854.1| - 0.22 11.4 3.8 9.5 6.2 0.8 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.11 gi|145591852|ref|YP_001153854.1| - 0.23 11.4 1.3 0.57 10.1 1.3 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.10 gi|145591852|ref|YP_001153854.1| - 0.26 11.0 0.2 0.26 11.0 0.2 1.9 1 1 1 2 2 2 0 A2L zinc ribbon domain Rubredoxin_2 PF18073.1 gi|145591852|ref|YP_001153854.1| - 2 8.2 5.6 3.3 7.5 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain PaRep2b PF07775.11 gi|145591854|ref|YP_001153856.1| - 5.1e-45 153.9 1.2 1.1e-44 152.9 1.2 1.4 1 0 0 1 1 1 1 PaRep2b protein HTH_20 PF12840.7 gi|145591854|ref|YP_001153856.1| - 0.063 13.4 1.4 61 3.8 0.0 4.4 4 0 0 4 4 4 0 Helix-turn-helix domain Dak2 PF02734.17 gi|145591854|ref|YP_001153856.1| - 1.6 8.6 14.3 2.9 7.8 2.9 3.3 3 0 0 3 3 3 0 DAK2 domain Fusion_gly PF00523.18 gi|145591854|ref|YP_001153856.1| - 2.4 6.3 8.3 3.7 5.7 8.3 1.2 1 0 0 1 1 1 0 Fusion glycoprotein F0 PaRep2b PF07775.11 gi|145591855|ref|YP_001153857.1| - 7.2e-07 28.1 0.8 8.3e-07 27.9 0.8 1.1 1 0 0 1 1 1 1 PaRep2b protein YAF2_RYBP PF17219.3 gi|145591855|ref|YP_001153857.1| - 0.032 13.8 1.2 0.051 13.2 1.2 1.3 1 0 0 1 1 1 0 Yaf2/RYBP C-terminal binding motif Ribosomal_S11 PF00411.19 gi|145591857|ref|YP_001153859.1| - 1.1e-42 144.9 1.3 1.4e-42 144.5 1.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 PaRep2b PF07775.11 gi|145591857|ref|YP_001153859.1| - 0.2 10.1 0.0 0.29 9.6 0.0 1.3 1 1 0 1 1 1 0 PaRep2b protein SPOUT_MTase_2 PF14419.6 gi|145591858|ref|YP_001153860.1| - 1.8e-65 219.5 0.2 2.7e-65 218.9 0.2 1.3 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.17 gi|145591858|ref|YP_001153860.1| - 5e-23 81.8 0.1 1.4e-22 80.4 0.0 1.7 2 1 0 2 2 2 1 THUMP domain DUF2258 PF10015.9 gi|145591859|ref|YP_001153861.1| - 1e-22 80.0 0.2 1e-22 80.0 0.2 1.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) ArsA_HSP20 PF17886.1 gi|145591860|ref|YP_001153862.1| - 7e-15 54.3 0.1 1.1e-14 53.7 0.1 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|145591860|ref|YP_001153862.1| - 2e-13 50.4 3.4 5.1e-12 45.8 3.4 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|145591860|ref|YP_001153862.1| - 0.0011 19.1 0.0 0.0013 18.9 0.0 1.2 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|145591860|ref|YP_001153862.1| - 0.0012 19.8 0.3 0.0019 19.2 0.3 1.3 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|145591860|ref|YP_001153862.1| - 0.0096 16.3 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 1 PIH1 CS-like domain AAA PF00004.29 gi|145591861|ref|YP_001153863.1| - 1.6e-99 329.4 0.0 4.1e-50 169.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|145591861|ref|YP_001153863.1| - 3.7e-37 125.9 2.4 1.2e-19 69.9 0.2 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|145591861|ref|YP_001153863.1| - 2.6e-34 117.3 0.6 3.6e-33 113.6 0.9 2.8 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|145591861|ref|YP_001153863.1| - 3.4e-15 56.1 0.0 2.3e-07 30.7 0.0 2.8 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|145591861|ref|YP_001153863.1| - 4.9e-14 52.8 0.0 1.5e-07 31.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|145591861|ref|YP_001153863.1| - 3.8e-12 46.9 0.0 9.3e-06 26.1 0.0 3.6 2 1 0 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.17 gi|145591861|ref|YP_001153863.1| - 5.9e-12 45.2 0.8 1.4e-11 44.0 0.8 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|145591861|ref|YP_001153863.1| - 9.7e-12 45.3 0.1 0.00067 19.9 0.0 4.2 2 2 1 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|145591861|ref|YP_001153863.1| - 1.7e-11 44.2 0.4 3e-05 24.1 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|145591861|ref|YP_001153863.1| - 1.8e-11 44.4 0.0 3.4e-05 24.1 0.0 2.7 3 0 0 3 3 2 2 AAA domain Vps4_C PF09336.10 gi|145591861|ref|YP_001153863.1| - 2.1e-10 40.4 1.0 5.5e-05 23.1 0.0 3.4 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|145591861|ref|YP_001153863.1| - 6.7e-10 39.1 0.0 9.1e-05 22.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|145591861|ref|YP_001153863.1| - 3.2e-09 36.5 0.0 0.00029 20.2 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|145591861|ref|YP_001153863.1| - 1.6e-08 34.5 0.0 0.0029 17.4 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|145591861|ref|YP_001153863.1| - 5.4e-08 33.4 0.0 0.0073 16.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|145591861|ref|YP_001153863.1| - 8.9e-07 29.3 0.0 0.0017 18.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|145591861|ref|YP_001153863.1| - 2.9e-06 26.8 0.5 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|145591861|ref|YP_001153863.1| - 4.9e-06 26.4 0.0 0.097 12.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|145591861|ref|YP_001153863.1| - 5.9e-06 26.1 0.1 0.088 12.5 0.0 3.5 2 2 0 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|145591861|ref|YP_001153863.1| - 8e-06 25.9 0.1 0.36 10.8 0.0 3.1 2 1 1 3 3 3 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|145591861|ref|YP_001153863.1| - 9.4e-06 26.0 0.0 0.25 11.8 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|145591861|ref|YP_001153863.1| - 4.4e-05 23.1 0.0 0.12 11.9 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_3 PF07726.11 gi|145591861|ref|YP_001153863.1| - 7.2e-05 22.7 0.1 0.99 9.3 0.0 3.4 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|145591861|ref|YP_001153863.1| - 0.00014 21.2 0.0 0.22 10.7 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin ATPase PF06745.13 gi|145591861|ref|YP_001153863.1| - 0.00021 20.7 1.8 0.52 9.6 0.1 3.9 3 1 1 4 4 4 1 KaiC ABC_tran PF00005.27 gi|145591861|ref|YP_001153863.1| - 0.00028 21.4 0.0 0.4 11.2 0.0 2.6 2 0 0 2 2 2 1 ABC transporter NACHT PF05729.12 gi|145591861|ref|YP_001153863.1| - 0.00041 20.3 0.4 1.1 9.1 0.0 3.2 3 0 0 3 3 3 1 NACHT domain MazE_antitoxin PF04014.18 gi|145591861|ref|YP_001153863.1| - 0.00043 20.1 1.0 0.0036 17.2 0.2 2.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF815 PF05673.13 gi|145591861|ref|YP_001153863.1| - 0.00045 19.5 0.0 0.39 9.8 0.0 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.16 gi|145591861|ref|YP_001153863.1| - 0.00051 19.5 0.4 0.2 11.1 0.0 3.0 3 0 0 3 3 2 1 PhoH-like protein AAA_17 PF13207.6 gi|145591861|ref|YP_001153863.1| - 0.0015 19.0 0.1 4.6 7.7 0.0 3.2 3 0 0 3 3 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|145591861|ref|YP_001153863.1| - 0.0028 17.8 0.0 1.9 8.6 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|145591861|ref|YP_001153863.1| - 0.0033 17.0 7.3 3 7.4 0.2 4.0 2 2 1 3 3 3 1 AAA domain AAA_19 PF13245.6 gi|145591861|ref|YP_001153863.1| - 0.0053 17.1 1.5 1 9.7 0.5 3.1 2 1 0 2 2 2 1 AAA domain Guanylate_kin PF00625.21 gi|145591861|ref|YP_001153863.1| - 0.0053 16.5 0.3 17 5.0 0.0 4.1 2 2 2 4 4 4 0 Guanylate kinase ATPase_2 PF01637.18 gi|145591861|ref|YP_001153863.1| - 0.0059 16.5 0.5 2.5 7.9 0.1 3.3 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|145591861|ref|YP_001153863.1| - 0.0079 15.4 0.1 3.4 6.8 0.0 3.2 3 0 0 3 3 3 0 NB-ARC domain AAA_30 PF13604.6 gi|145591861|ref|YP_001153863.1| - 0.0087 15.8 0.3 0.84 9.3 0.0 2.9 3 0 0 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|145591861|ref|YP_001153863.1| - 0.011 15.7 2.4 7.9 6.4 0.0 3.9 4 1 1 5 5 3 0 NTPase Bac_DnaA PF00308.18 gi|145591861|ref|YP_001153863.1| - 0.019 14.8 0.0 4.4 7.1 0.0 3.5 4 1 0 4 4 3 0 Bacterial dnaA protein Viral_helicase1 PF01443.18 gi|145591861|ref|YP_001153863.1| - 0.02 14.7 0.0 0.74 9.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|145591861|ref|YP_001153863.1| - 0.021 14.7 0.0 7.6 6.4 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|145591861|ref|YP_001153863.1| - 0.023 14.3 0.0 9.3 5.8 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PduV-EutP PF10662.9 gi|145591861|ref|YP_001153863.1| - 0.034 13.9 0.0 0.89 9.3 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.6 gi|145591861|ref|YP_001153863.1| - 0.044 13.6 0.0 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|145591861|ref|YP_001153863.1| - 0.045 13.5 0.0 8.1 6.3 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain Parvo_NS1 PF01057.17 gi|145591861|ref|YP_001153863.1| - 0.066 12.3 0.1 1.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AFG1_ATPase PF03969.16 gi|145591861|ref|YP_001153863.1| - 0.083 11.8 0.0 12 4.7 0.0 2.6 3 0 0 3 3 2 0 AFG1-like ATPase TniB PF05621.11 gi|145591861|ref|YP_001153863.1| - 0.1 12.0 0.0 5.7 6.3 0.0 2.9 3 0 0 3 3 3 0 Bacterial TniB protein DUF1905 PF08922.11 gi|145591861|ref|YP_001153863.1| - 0.11 12.6 0.8 24 5.1 0.0 3.2 3 0 0 3 3 2 0 Domain of unknown function (DUF1905) DUF2075 PF09848.9 gi|145591861|ref|YP_001153863.1| - 0.12 11.6 0.1 0.67 9.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Roc PF08477.13 gi|145591861|ref|YP_001153863.1| - 0.17 12.1 0.0 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase IPT PF01745.16 gi|145591861|ref|YP_001153863.1| - 0.19 11.1 0.3 4.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Isopentenyl transferase ANAPC_CDC26 PF10471.9 gi|145591861|ref|YP_001153863.1| - 0.27 12.1 0.3 27 5.7 0.1 2.5 2 0 0 2 2 2 0 Anaphase-promoting complex APC subunit CDC26 CBS PF00571.28 gi|145591862|ref|YP_001153864.1| - 3.6e-61 203.5 20.6 3.3e-10 40.3 0.0 8.4 8 0 0 8 8 8 8 CBS domain IF3_N PF05198.16 gi|145591862|ref|YP_001153864.1| - 0.00061 20.0 1.3 2.5 8.4 0.0 5.0 5 0 0 5 5 5 1 Translation initiation factor IF-3, N-terminal domain DUF3865 PF12981.7 gi|145591862|ref|YP_001153864.1| - 0.085 12.7 0.1 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3865) MMR_HSR1_C PF08438.10 gi|145591863|ref|YP_001153865.1| - 5e-33 114.0 0.0 7.6e-33 113.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|145591863|ref|YP_001153865.1| - 9.7e-20 70.8 0.0 2e-19 69.8 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|145591863|ref|YP_001153865.1| - 1.1e-07 31.8 0.0 2.5e-07 30.7 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|145591863|ref|YP_001153865.1| - 0.0007 19.1 0.0 0.0038 16.8 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|145591863|ref|YP_001153865.1| - 0.0045 16.6 0.0 0.78 9.2 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain Sigma70_r4_2 PF08281.12 gi|145591864|ref|YP_001153866.1| - 5.2e-08 32.4 0.5 9.6e-08 31.6 0.5 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|145591864|ref|YP_001153866.1| - 1.8e-07 30.7 0.1 3.8e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|145591864|ref|YP_001153866.1| - 6e-07 29.4 0.1 1.1e-06 28.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase GerE PF00196.19 gi|145591864|ref|YP_001153866.1| - 4.8e-06 26.0 0.1 8.2e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.6 gi|145591864|ref|YP_001153866.1| - 4.9e-06 26.2 0.1 9.2e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|145591864|ref|YP_001153866.1| - 1.9e-05 24.7 0.1 3.1e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Terminase_5 PF06056.12 gi|145591864|ref|YP_001153866.1| - 0.00021 21.1 0.0 0.00037 20.3 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) HTH_29 PF13551.6 gi|145591864|ref|YP_001153866.1| - 0.00027 20.9 0.1 0.00054 19.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn helix HTH_40 PF14493.6 gi|145591864|ref|YP_001153866.1| - 0.00068 20.0 0.0 0.001 19.4 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|145591864|ref|YP_001153866.1| - 0.00088 19.0 0.8 0.0017 18.1 0.1 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.6 gi|145591864|ref|YP_001153866.1| - 0.0017 17.9 0.1 0.0038 16.8 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|145591864|ref|YP_001153866.1| - 0.0048 17.0 1.2 0.033 14.3 0.3 2.4 2 0 0 2 2 2 1 Sigma-70 region 3 TrmB PF01978.19 gi|145591864|ref|YP_001153866.1| - 0.0059 16.5 0.1 0.014 15.3 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|145591864|ref|YP_001153866.1| - 0.008 16.0 0.0 0.015 15.1 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain TnsD PF15978.5 gi|145591864|ref|YP_001153866.1| - 0.0081 15.2 0.1 0.0081 15.2 0.1 1.2 1 0 0 1 1 1 1 Tn7-like transposition protein D HTH_11 PF08279.12 gi|145591864|ref|YP_001153866.1| - 0.0081 16.1 0.2 0.032 14.2 0.0 2.1 2 1 0 2 2 2 1 HTH domain HTH_22 PF13309.6 gi|145591864|ref|YP_001153866.1| - 0.0099 15.9 0.0 0.028 14.5 0.0 1.8 2 0 0 2 2 1 1 HTH domain HTH_17 PF12728.7 gi|145591864|ref|YP_001153866.1| - 0.011 15.9 0.0 0.021 15.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|145591864|ref|YP_001153866.1| - 0.012 15.5 0.1 0.03 14.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|145591864|ref|YP_001153866.1| - 0.022 15.0 0.4 0.24 11.7 0.0 2.5 2 0 0 2 2 2 0 NUMOD1 domain SpoIIID PF12116.8 gi|145591864|ref|YP_001153866.1| - 0.027 14.5 0.5 8.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Stage III sporulation protein D Sigma70_ECF PF07638.11 gi|145591864|ref|YP_001153866.1| - 0.033 14.1 0.2 0.059 13.3 0.2 1.3 1 0 0 1 1 1 0 ECF sigma factor GntR PF00392.21 gi|145591864|ref|YP_001153866.1| - 0.049 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sigma70_r4 PF04545.16 gi|145591864|ref|YP_001153866.1| - 0.056 13.0 0.2 0.12 11.9 0.2 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.22 gi|145591864|ref|YP_001153866.1| - 0.06 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix eIF-1a PF01176.19 gi|145591864|ref|YP_001153866.1| - 0.08 12.8 0.0 0.24 11.2 0.0 1.7 2 0 0 2 2 1 0 Translation initiation factor 1A / IF-1 HTH_35 PF13693.6 gi|145591864|ref|YP_001153866.1| - 0.083 12.9 0.1 0.14 12.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pex14_N PF04695.13 gi|145591864|ref|YP_001153866.1| - 0.1 13.2 0.0 0.19 12.4 0.0 1.5 2 0 0 2 2 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region HTH_8 PF02954.19 gi|145591864|ref|YP_001153866.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF134 PF02001.16 gi|145591864|ref|YP_001153866.1| - 0.12 12.9 0.1 0.49 11.0 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF134 IF2_N PF04760.15 gi|145591864|ref|YP_001153866.1| - 0.13 12.0 0.3 6.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region HTH_26 PF13443.6 gi|145591864|ref|YP_001153866.1| - 0.17 12.4 0.0 0.36 11.3 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HIT PF01230.23 gi|145591865|ref|YP_001153867.1| - 2.7e-23 82.5 0.0 3.8e-23 82.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|145591865|ref|YP_001153867.1| - 4.7e-15 56.1 0.0 6.9e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Staph_haemo PF05480.11 gi|145591865|ref|YP_001153867.1| - 0.15 11.8 0.4 0.38 10.6 0.3 1.7 1 1 0 1 1 1 0 Staphylococcus haemolytic protein AA_kinase PF00696.28 gi|145591866|ref|YP_001153868.1| - 2.5e-25 89.5 0.1 6.6e-24 84.8 0.1 2.0 1 1 0 1 1 1 1 Amino acid kinase family TetR_C_28 PF17937.1 gi|145591866|ref|YP_001153868.1| - 0.058 13.9 0.4 0.094 13.2 0.4 1.3 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain bPH_5 PF10882.8 gi|145591866|ref|YP_001153868.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain tRNA-synt_2b PF00587.25 gi|145591868|ref|YP_001153870.1| - 1.5e-32 113.0 0.0 2.9e-32 112.1 0.0 1.4 2 0 0 2 2 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|145591868|ref|YP_001153870.1| - 6.8e-21 74.5 2.3 1.3e-20 73.7 2.3 1.4 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain Dynamitin PF04912.14 gi|145591868|ref|YP_001153870.1| - 0.0012 18.3 1.4 0.0017 17.7 1.4 1.1 1 0 0 1 1 1 1 Dynamitin Syntaxin-6_N PF09177.11 gi|145591868|ref|YP_001153870.1| - 0.0091 16.5 0.5 0.023 15.3 0.5 1.6 1 0 0 1 1 1 1 Syntaxin 6, N-terminal UPF0242 PF06785.11 gi|145591868|ref|YP_001153870.1| - 0.012 15.7 0.1 0.019 15.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus FapA PF03961.13 gi|145591868|ref|YP_001153870.1| - 0.04 12.5 0.2 0.062 11.9 0.2 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A TMF_TATA_bd PF12325.8 gi|145591868|ref|YP_001153870.1| - 0.044 14.0 2.3 0.085 13.1 2.3 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding OmpH PF03938.14 gi|145591868|ref|YP_001153870.1| - 0.046 14.1 0.1 0.1 12.9 0.0 1.6 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) Cep57_MT_bd PF06657.13 gi|145591868|ref|YP_001153870.1| - 0.08 13.4 1.7 0.16 12.4 1.7 1.5 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 GAS PF13851.6 gi|145591868|ref|YP_001153870.1| - 0.082 12.2 1.9 0.14 11.5 1.9 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF349 PF03993.12 gi|145591868|ref|YP_001153870.1| - 0.089 13.1 4.6 0.18 12.1 4.6 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) DUF1465 PF07323.12 gi|145591868|ref|YP_001153870.1| - 0.092 12.6 0.6 0.17 11.8 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) APG6_N PF17675.1 gi|145591868|ref|YP_001153870.1| - 0.13 12.8 3.7 0.24 11.9 3.7 1.4 1 0 0 1 1 1 0 Apg6 coiled-coil region Fmp27_WPPW PF10359.9 gi|145591868|ref|YP_001153870.1| - 0.14 11.0 0.2 0.21 10.4 0.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain SKA2 PF16740.5 gi|145591868|ref|YP_001153870.1| - 0.22 11.3 2.4 0.76 9.6 1.2 2.0 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 AAA_23 PF13476.6 gi|145591868|ref|YP_001153870.1| - 0.45 11.0 1.7 0.7 10.4 1.7 1.3 1 0 0 1 1 1 0 AAA domain Prefoldin_2 PF01920.20 gi|145591868|ref|YP_001153870.1| - 0.52 10.3 2.9 4.2 7.4 1.0 2.2 2 0 0 2 2 2 0 Prefoldin subunit Nup54 PF13874.6 gi|145591868|ref|YP_001153870.1| - 0.66 10.1 4.6 1 9.5 2.4 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 GTP-bdg_M PF16360.5 gi|145591868|ref|YP_001153870.1| - 0.77 10.4 4.1 1.7 9.3 4.1 1.6 1 0 0 1 1 1 0 GTP-binding GTPase Middle Region ZapB PF06005.12 gi|145591868|ref|YP_001153870.1| - 5.7 7.5 9.0 35 4.9 9.0 2.2 1 1 0 1 1 1 0 Cell division protein ZapB CCDC-167 PF15188.6 gi|145591868|ref|YP_001153870.1| - 7.8 6.9 7.0 21 5.5 7.0 1.7 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF4199 PF13858.6 gi|145591870|ref|YP_001153872.1| - 0.51 10.7 9.5 0.13 12.7 6.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) 7TMR-DISM_7TM PF07695.11 gi|145591870|ref|YP_001153872.1| - 0.7 9.8 11.7 1.2 8.9 11.5 1.5 1 1 0 1 1 1 0 7TM diverse intracellular signalling Ribonuc_red_lgC PF02867.15 gi|145591871|ref|YP_001153873.1| - 6.6e-139 463.8 0.0 8.1e-139 463.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain LAGLIDADG_3 PF14528.6 gi|145591871|ref|YP_001153873.1| - 4.2e-24 84.7 2.0 8.9e-21 74.0 0.9 2.9 2 0 0 2 2 2 2 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|145591871|ref|YP_001153873.1| - 4.4e-18 65.5 0.0 1.2e-17 64.1 0.0 1.7 2 0 0 2 2 2 1 Intein splicing domain Ribonuc_red_lgN PF00317.21 gi|145591871|ref|YP_001153873.1| - 1.5e-12 47.3 0.2 2.8e-12 46.4 0.2 1.5 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|145591871|ref|YP_001153873.1| - 0.0011 19.5 0.0 0.0031 18.1 0.0 1.8 1 0 0 1 1 1 1 ATP cone domain LAGLIDADG_WhiA PF14527.6 gi|145591871|ref|YP_001153873.1| - 0.011 15.7 0.1 0.36 10.9 0.0 2.5 2 0 0 2 2 2 0 WhiA LAGLIDADG-like domain Thioredoxin_3 PF13192.6 gi|145591872|ref|YP_001153874.1| - 0.045 13.8 0.0 0.19 11.8 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|145591873|ref|YP_001153875.1| - 1.9e-11 44.4 0.0 2.6e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_4 PF13462.6 gi|145591873|ref|YP_001153875.1| - 1.3e-06 28.6 0.0 2e-05 24.8 0.1 2.0 2 0 0 2 2 2 1 Thioredoxin DSBA PF01323.20 gi|145591873|ref|YP_001153875.1| - 5.9e-06 26.2 0.2 0.12 12.1 0.0 2.6 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin PF00085.20 gi|145591873|ref|YP_001153875.1| - 0.021 14.8 0.0 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Thioredoxin PPR PF01535.20 gi|145591873|ref|YP_001153875.1| - 0.062 13.6 0.6 4.8 7.6 0.1 3.2 3 0 0 3 3 3 0 PPR repeat CxC7 PF18866.1 gi|145591873|ref|YP_001153875.1| - 0.12 12.6 0.1 0.27 11.4 0.0 1.6 2 0 0 2 2 2 0 CxC7 like cysteine cluster associated with KDZ transposases Metallophos_2 PF12850.7 gi|145591875|ref|YP_001153877.1| - 4.9e-07 30.1 0.2 5.1e-06 26.8 0.2 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|145591875|ref|YP_001153877.1| - 0.0057 17.2 0.1 0.037 14.5 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Gp-FAR-1 PF05823.12 gi|145591875|ref|YP_001153877.1| - 0.097 13.0 0.0 0.14 12.5 0.0 1.1 1 0 0 1 1 1 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) CbiA PF01656.23 gi|145591876|ref|YP_001153878.1| - 0.00086 19.4 0.7 0.0046 17.0 0.7 2.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|145591876|ref|YP_001153878.1| - 0.0032 16.8 0.0 0.006 15.9 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.14 gi|145591876|ref|YP_001153878.1| - 0.0074 16.2 0.0 0.045 13.7 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B PTS_IIB PF02302.17 gi|145591876|ref|YP_001153878.1| - 0.012 16.3 0.1 4 8.2 0.0 3.2 3 0 0 3 3 3 0 PTS system, Lactose/Cellobiose specific IIB subunit cobW PF02492.19 gi|145591876|ref|YP_001153878.1| - 0.018 14.6 0.0 0.23 11.0 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain ParA PF10609.9 gi|145591876|ref|YP_001153878.1| - 0.023 14.2 2.6 0.04 13.4 0.4 2.4 3 0 0 3 3 3 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|145591876|ref|YP_001153878.1| - 0.045 13.6 0.0 0.098 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain PPK2 PF03976.14 gi|145591876|ref|YP_001153878.1| - 0.068 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) Thymidylate_kin PF02223.17 gi|145591876|ref|YP_001153878.1| - 0.072 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase MipZ PF09140.11 gi|145591876|ref|YP_001153878.1| - 0.094 12.0 0.0 0.27 10.5 0.0 1.7 2 0 0 2 2 2 0 ATPase MipZ AAA_33 PF13671.6 gi|145591876|ref|YP_001153878.1| - 0.14 12.3 0.0 0.3 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain B3_4 PF03483.17 gi|145591877|ref|YP_001153879.1| - 1e-24 87.1 0.0 1.5e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 B3/4 domain HTH_23 PF13384.6 gi|145591878|ref|YP_001153880.1| - 8.9e-06 25.3 0.2 3.1e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|145591878|ref|YP_001153880.1| - 4.1e-05 23.2 0.1 0.00023 20.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|145591878|ref|YP_001153880.1| - 0.00022 21.2 0.0 0.0017 18.4 0.0 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|145591878|ref|YP_001153880.1| - 0.00026 20.7 0.1 0.0005 19.8 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|145591878|ref|YP_001153880.1| - 0.00027 20.8 0.2 0.0012 18.8 0.0 2.2 2 1 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.16 gi|145591878|ref|YP_001153880.1| - 0.00037 19.9 0.5 0.0065 16.0 0.0 2.8 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|145591878|ref|YP_001153880.1| - 0.00077 19.0 0.2 0.0054 16.3 0.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|145591878|ref|YP_001153880.1| - 0.00089 19.7 0.3 0.0023 18.4 0.3 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145591878|ref|YP_001153880.1| - 0.0012 18.7 0.0 0.0052 16.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|145591878|ref|YP_001153880.1| - 0.0013 18.7 0.0 0.0035 17.4 0.0 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|145591878|ref|YP_001153880.1| - 0.0024 17.6 0.6 0.0063 16.2 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|145591878|ref|YP_001153880.1| - 0.0026 17.5 0.0 0.0048 16.6 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GerE PF00196.19 gi|145591878|ref|YP_001153880.1| - 0.0026 17.3 0.0 0.0056 16.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_AsnC-type PF13404.6 gi|145591878|ref|YP_001153880.1| - 0.0027 17.5 0.1 0.0074 16.1 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_29 PF13551.6 gi|145591878|ref|YP_001153880.1| - 0.0032 17.5 0.0 0.0084 16.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn helix Val_tRNA-synt_C PF10458.9 gi|145591878|ref|YP_001153880.1| - 0.0048 17.2 4.5 0.0048 17.2 4.5 1.6 2 0 0 2 2 1 1 Valyl tRNA synthetase tRNA binding arm HTH_28 PF13518.6 gi|145591878|ref|YP_001153880.1| - 0.011 15.8 0.1 0.029 14.5 0.0 1.8 1 1 1 2 2 1 0 Helix-turn-helix domain TnsD PF15978.5 gi|145591878|ref|YP_001153880.1| - 0.022 13.7 0.1 0.025 13.6 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D MarR_2 PF12802.7 gi|145591878|ref|YP_001153880.1| - 0.023 14.6 0.2 0.096 12.6 0.2 2.1 1 1 0 1 1 1 0 MarR family YdaS_antitoxin PF15943.5 gi|145591878|ref|YP_001153880.1| - 0.024 14.5 0.1 0.077 12.9 0.1 1.9 1 1 1 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_31 PF13560.6 gi|145591878|ref|YP_001153880.1| - 0.035 14.4 0.6 0.035 14.4 0.6 2.1 3 0 0 3 3 2 0 Helix-turn-helix domain Med9 PF07544.13 gi|145591878|ref|YP_001153880.1| - 0.037 14.1 0.3 0.062 13.4 0.3 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 HTH_10 PF04967.12 gi|145591878|ref|YP_001153880.1| - 0.039 13.7 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r3 PF04539.16 gi|145591878|ref|YP_001153880.1| - 0.045 13.8 3.8 4.9 7.3 0.0 2.3 1 1 1 2 2 2 0 Sigma-70 region 3 HTH_22 PF13309.6 gi|145591878|ref|YP_001153880.1| - 0.048 13.7 0.0 0.25 11.5 0.0 2.2 2 0 0 2 2 2 0 HTH domain GntR PF00392.21 gi|145591878|ref|YP_001153880.1| - 0.072 12.7 1.1 1.4 8.7 0.2 3.0 2 1 1 3 3 3 0 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|145591878|ref|YP_001153880.1| - 0.074 13.3 0.1 0.25 11.6 0.1 2.0 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|145591878|ref|YP_001153880.1| - 0.092 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Put_DNA-bind_N PF06971.13 gi|145591878|ref|YP_001153880.1| - 0.1 12.6 0.0 0.38 10.8 0.0 1.9 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_36 PF13730.6 gi|145591878|ref|YP_001153880.1| - 0.14 12.2 0.0 0.53 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|145591878|ref|YP_001153880.1| - 0.14 12.2 0.0 0.14 12.2 0.0 2.0 3 0 0 3 3 2 0 Helix-turn-helix LacI PF00356.21 gi|145591878|ref|YP_001153880.1| - 0.4 10.5 1.4 1.1 9.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family ATPase PF06745.13 gi|145591879|ref|YP_001153881.1| - 3.9e-86 288.1 0.0 4.8e-86 287.8 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|145591879|ref|YP_001153881.1| - 1.1e-06 28.3 0.0 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591879|ref|YP_001153881.1| - 0.0021 18.5 0.3 0.05 14.0 0.1 2.2 1 1 1 2 2 2 1 AAA ATPase domain DUF2075 PF09848.9 gi|145591879|ref|YP_001153881.1| - 0.012 14.9 0.5 0.069 12.4 0.1 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) Rad51 PF08423.11 gi|145591879|ref|YP_001153881.1| - 0.016 14.5 0.0 0.11 11.8 0.0 1.9 2 0 0 2 2 2 0 Rad51 GvpD PF07088.11 gi|145591879|ref|YP_001153881.1| - 0.023 13.3 0.0 0.032 12.9 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_24 PF13479.6 gi|145591879|ref|YP_001153881.1| - 0.033 13.9 0.1 0.33 10.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|145591879|ref|YP_001153881.1| - 0.045 12.8 0.0 0.085 11.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|145591879|ref|YP_001153881.1| - 0.056 13.2 0.2 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|145591879|ref|YP_001153881.1| - 0.073 13.5 0.7 0.15 12.5 0.3 1.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|145591879|ref|YP_001153881.1| - 0.083 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|145591879|ref|YP_001153881.1| - 0.096 13.0 0.2 0.23 11.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|145591879|ref|YP_001153881.1| - 0.12 12.2 0.0 0.24 11.2 0.0 1.5 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain IstB_IS21 PF01695.17 gi|145591879|ref|YP_001153881.1| - 0.15 11.8 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.6 gi|145591879|ref|YP_001153881.1| - 0.17 11.9 0.0 0.34 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|145591879|ref|YP_001153881.1| - 0.22 11.9 0.8 0.48 10.7 0.1 1.8 2 1 0 2 2 2 0 AAA domain Uds1 PF15456.6 gi|145591879|ref|YP_001153881.1| - 0.34 11.1 2.4 0.64 10.2 0.4 2.3 3 0 0 3 3 3 0 Up-regulated During Septation AdoHcyase PF05221.17 gi|145591880|ref|YP_001153882.1| - 1e-66 225.1 0.0 5.8e-66 222.7 0.0 1.8 1 1 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|145591880|ref|YP_001153882.1| - 8.5e-51 172.2 0.1 1.6e-50 171.4 0.1 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|145591880|ref|YP_001153882.1| - 1.5e-06 27.7 0.1 3.1e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|145591880|ref|YP_001153882.1| - 0.00011 21.9 0.8 0.00021 20.9 0.2 1.8 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|145591880|ref|YP_001153882.1| - 0.0015 18.8 0.1 0.021 15.1 0.1 2.3 2 0 0 2 2 2 1 TrkA-N domain DUF573 PF04504.14 gi|145591881|ref|YP_001153883.1| - 0.095 13.4 0.1 0.14 12.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF573 MCM6_C PF18263.1 gi|145591882|ref|YP_001153884.1| - 0.03 14.5 0.4 0.042 14.1 0.4 1.2 1 0 0 1 1 1 0 MCM6 C-terminal winged-helix domain Ribosomal_L14 PF00238.19 gi|145591883|ref|YP_001153885.1| - 1.5e-34 118.7 0.1 1.8e-34 118.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L19 PF01245.20 gi|145591883|ref|YP_001153885.1| - 0.0082 16.1 0.3 0.012 15.5 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein L19 DUF362 PF04015.12 gi|145591884|ref|YP_001153886.1| - 0.0031 17.8 0.0 0.0088 16.3 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF362) YonK PF09642.10 gi|145591884|ref|YP_001153886.1| - 0.081 13.1 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 YonK protein TruD PF01142.18 gi|145591885|ref|YP_001153887.1| - 3.7e-105 352.1 0.0 3e-104 349.2 0.0 1.9 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) DUF5362 PF17319.2 gi|145591888|ref|YP_001153890.1| - 0.87 9.5 10.0 1.4e+02 2.4 10.0 2.1 1 1 0 1 1 1 0 Family of unknown function (DUF5362) CBM64 PF18666.1 gi|145591889|ref|YP_001153891.1| - 0.055 13.6 1.0 0.19 11.8 0.1 2.2 2 0 0 2 2 2 0 Carbohydrate-binding module 64 AP_endonuc_2 PF01261.24 gi|145591890|ref|YP_001153892.1| - 6.4e-25 87.8 0.0 9.1e-25 87.3 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|145591890|ref|YP_001153892.1| - 0.072 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 UV-endonuclease UvdE SEA PF01390.20 gi|145591890|ref|YP_001153892.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 SEA domain FbpA PF05833.11 gi|145591891|ref|YP_001153893.1| - 3.1e-30 105.4 0.0 1.2e-29 103.4 0.0 1.8 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|145591891|ref|YP_001153893.1| - 1.6e-19 70.6 0.0 2.9e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain Spc24 PF08286.11 gi|145591891|ref|YP_001153893.1| - 0.00014 22.1 2.7 0.025 14.8 0.2 2.3 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 DUF4763 PF15960.5 gi|145591891|ref|YP_001153893.1| - 0.027 13.8 1.4 2.9 7.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) DUF4391 PF14335.6 gi|145591891|ref|YP_001153893.1| - 0.03 14.0 3.6 0.56 9.9 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) DprA_WH PF17782.1 gi|145591891|ref|YP_001153893.1| - 0.031 14.4 2.4 0.06 13.5 0.2 2.6 2 0 0 2 2 1 0 DprA winged helix domain DUF812 PF05667.11 gi|145591891|ref|YP_001153893.1| - 0.032 13.1 6.1 2.3 7.0 3.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF812) XhlA PF10779.9 gi|145591891|ref|YP_001153893.1| - 0.034 14.3 5.2 0.13 12.5 1.7 2.4 2 0 0 2 2 2 0 Haemolysin XhlA COG5 PF10392.9 gi|145591891|ref|YP_001153893.1| - 0.045 13.9 2.2 5.7 7.1 0.2 2.4 2 0 0 2 2 2 0 Golgi transport complex subunit 5 TMF_DNA_bd PF12329.8 gi|145591891|ref|YP_001153893.1| - 0.06 13.4 18.4 0.18 11.8 11.5 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|145591891|ref|YP_001153893.1| - 0.061 13.5 14.5 0.25 11.6 7.5 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF2205 PF10224.9 gi|145591891|ref|YP_001153893.1| - 0.073 13.1 0.2 0.073 13.1 0.2 2.1 2 0 0 2 2 1 0 Short coiled-coil protein DUF4140 PF13600.6 gi|145591891|ref|YP_001153893.1| - 0.091 13.2 7.5 0.46 10.9 1.5 2.6 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) MIP-T3_C PF17749.1 gi|145591891|ref|YP_001153893.1| - 0.091 12.7 3.0 2.9 7.8 0.0 2.3 2 0 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region GldM_N PF12081.8 gi|145591891|ref|YP_001153893.1| - 0.1 12.7 2.2 6.5 6.8 0.0 2.2 2 0 0 2 2 2 0 GldM N-terminal domain LURAP PF14854.6 gi|145591891|ref|YP_001153893.1| - 0.1 12.5 0.2 0.1 12.5 0.2 1.8 2 0 0 2 2 1 0 Leucine rich adaptor protein MCU PF04678.13 gi|145591891|ref|YP_001153893.1| - 0.11 12.6 1.7 3.8 7.6 0.8 2.2 2 0 0 2 2 2 0 Mitochondrial calcium uniporter CASP_C PF08172.12 gi|145591891|ref|YP_001153893.1| - 0.11 11.8 4.7 0.91 8.8 0.6 2.1 2 0 0 2 2 2 0 CASP C terminal APG6_N PF17675.1 gi|145591891|ref|YP_001153893.1| - 0.12 12.9 13.6 1.2 9.7 6.8 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region NFACT-C PF11923.8 gi|145591891|ref|YP_001153893.1| - 0.12 12.3 0.7 1.4 8.9 0.0 2.4 2 0 0 2 2 2 0 NFACT protein C-terminal domain Fib_alpha PF08702.10 gi|145591891|ref|YP_001153893.1| - 0.12 12.5 0.3 7.1 6.8 0.1 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Lebercilin PF15619.6 gi|145591891|ref|YP_001153893.1| - 0.2 11.3 11.7 0.18 11.4 5.7 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease GCN5L1 PF06320.13 gi|145591891|ref|YP_001153893.1| - 0.2 11.8 5.8 3.5 7.8 1.4 2.3 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) YabA PF06156.13 gi|145591891|ref|YP_001153893.1| - 0.26 12.0 3.9 2.5 8.8 0.8 2.4 2 0 0 2 2 2 0 Initiation control protein YabA DUF4407 PF14362.6 gi|145591891|ref|YP_001153893.1| - 0.35 10.2 6.0 0.68 9.2 6.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Tektin PF03148.14 gi|145591891|ref|YP_001153893.1| - 0.36 9.5 10.6 0.69 8.6 2.9 2.1 2 0 0 2 2 2 0 Tektin family Occludin_ELL PF07303.13 gi|145591891|ref|YP_001153893.1| - 0.37 11.5 4.6 10 6.9 0.2 2.3 2 0 0 2 2 2 0 Occludin homology domain CENP-H PF05837.12 gi|145591891|ref|YP_001153893.1| - 0.38 11.2 6.8 1.9 8.9 1.3 2.4 2 0 0 2 2 2 0 Centromere protein H (CENP-H) UPF0242 PF06785.11 gi|145591891|ref|YP_001153893.1| - 0.41 10.7 8.2 5.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Fmp27_WPPW PF10359.9 gi|145591891|ref|YP_001153893.1| - 0.64 8.8 1.9 17 4.1 0.2 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Seryl_tRNA_N PF02403.22 gi|145591891|ref|YP_001153893.1| - 0.83 9.9 8.7 14 6.0 4.1 2.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF4795 PF16043.5 gi|145591891|ref|YP_001153893.1| - 0.92 9.1 8.8 4.4 6.9 3.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4795) Fzo_mitofusin PF04799.13 gi|145591891|ref|YP_001153893.1| - 0.93 9.0 6.8 1.4 8.5 0.4 2.3 2 0 0 2 2 2 0 fzo-like conserved region Snf7 PF03357.21 gi|145591891|ref|YP_001153893.1| - 1 9.0 15.1 0.69 9.5 0.9 2.2 2 0 0 2 2 2 0 Snf7 Prefoldin PF02996.17 gi|145591891|ref|YP_001153893.1| - 1 9.3 11.6 0.95 9.4 1.7 2.5 2 0 0 2 2 2 0 Prefoldin subunit DUF16 PF01519.16 gi|145591891|ref|YP_001153893.1| - 1 9.9 4.4 6.8 7.2 2.3 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF16 Tropomyosin_1 PF12718.7 gi|145591891|ref|YP_001153893.1| - 1.2 9.3 14.8 0.25 11.5 6.6 2.2 2 0 0 2 2 2 0 Tropomyosin like DUF3450 PF11932.8 gi|145591891|ref|YP_001153893.1| - 1.2 8.4 8.5 4.9 6.4 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) TSC22 PF01166.18 gi|145591891|ref|YP_001153893.1| - 1.3 9.4 8.5 1.8 9.0 0.2 3.3 2 1 1 3 3 3 0 TSC-22/dip/bun family OmpH PF03938.14 gi|145591891|ref|YP_001153893.1| - 1.4 9.3 10.9 8.3 6.8 4.5 2.3 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) Paralemmin PF03285.15 gi|145591891|ref|YP_001153893.1| - 2.1 7.9 8.6 1.1 8.8 2.1 2.2 2 0 0 2 2 2 0 Paralemmin Med4 PF10018.9 gi|145591891|ref|YP_001153893.1| - 2.1 8.0 6.3 1.3 8.6 1.5 2.2 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 TPR_MLP1_2 PF07926.12 gi|145591891|ref|YP_001153893.1| - 2.5 8.2 16.7 2.9 8.0 0.7 2.4 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Nsp1_C PF05064.13 gi|145591891|ref|YP_001153893.1| - 2.5 7.9 7.6 2.8 7.8 2.6 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DUF883 PF05957.13 gi|145591891|ref|YP_001153893.1| - 2.6 8.7 10.8 3.6 8.2 2.9 2.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) GAS PF13851.6 gi|145591891|ref|YP_001153893.1| - 3.3 7.0 13.4 2.8 7.2 4.3 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|145591891|ref|YP_001153893.1| - 3.4 7.4 10.6 8.3 6.2 0.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Prefoldin_2 PF01920.20 gi|145591891|ref|YP_001153893.1| - 3.7 7.5 16.0 4.5 7.3 0.6 2.4 2 0 0 2 2 2 0 Prefoldin subunit ERM PF00769.19 gi|145591891|ref|YP_001153893.1| - 4 7.2 18.3 0.2 11.4 5.9 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family DivIVA PF05103.13 gi|145591891|ref|YP_001153893.1| - 4.3 7.4 10.2 15 5.7 3.5 2.4 2 0 0 2 2 2 0 DivIVA protein PspA_IM30 PF04012.12 gi|145591891|ref|YP_001153893.1| - 4.3 6.8 17.7 5.7 6.4 2.6 2.5 2 0 0 2 2 2 0 PspA/IM30 family Uso1_p115_C PF04871.13 gi|145591891|ref|YP_001153893.1| - 6.3 7.2 18.4 8.8 6.7 9.1 2.2 2 0 0 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region CdvA PF18822.1 gi|145591891|ref|YP_001153893.1| - 6.8 6.5 11.9 3.3 7.6 5.6 2.5 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Spc7 PF08317.11 gi|145591891|ref|YP_001153893.1| - 6.8 5.5 13.2 5 5.9 5.0 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Leu_zip PF15294.6 gi|145591891|ref|YP_001153893.1| - 7.9 5.9 10.6 1.6 8.2 4.6 2.0 1 1 1 2 2 2 0 Leucine zipper FlaC_arch PF05377.11 gi|145591891|ref|YP_001153893.1| - 8.7 6.8 6.2 33 5.0 2.2 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Mut7-C PF01927.16 gi|145591892|ref|YP_001153894.1| - 1.5e-21 77.0 0.6 1.9e-21 76.7 0.6 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF1644 PF07800.12 gi|145591892|ref|YP_001153894.1| - 0.008 16.3 0.6 0.0093 16.0 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1644) zf-C2H2_3 PF13878.6 gi|145591892|ref|YP_001153894.1| - 0.11 12.3 2.5 1.1 9.1 0.0 2.9 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO DHO_dh PF01180.21 gi|145591893|ref|YP_001153895.1| - 7.6e-24 84.4 0.0 1.8e-22 79.9 0.0 2.1 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Pribosyltran PF00156.27 gi|145591894|ref|YP_001153896.1| - 3e-15 56.1 0.1 4.3e-15 55.6 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|145591894|ref|YP_001153896.1| - 0.0097 15.4 0.0 0.014 14.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|145591894|ref|YP_001153896.1| - 0.038 13.5 0.0 0.05 13.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase PyrI PF01948.18 gi|145591895|ref|YP_001153897.1| - 5.5e-35 119.5 0.9 6.6e-35 119.2 0.9 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|145591895|ref|YP_001153897.1| - 1.2e-14 53.9 0.8 1.7e-14 53.4 0.1 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain Exonuc_VII_L PF02601.15 gi|145591896|ref|YP_001153898.1| - 0.025 14.2 0.4 0.03 13.9 0.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2294 PF10057.9 gi|145591896|ref|YP_001153898.1| - 0.048 13.8 0.3 0.083 13.0 0.3 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) GerPC PF10737.9 gi|145591896|ref|YP_001153898.1| - 0.1 12.6 0.2 0.24 11.4 0.1 1.7 1 1 0 1 1 1 0 Spore germination protein GerPC Ribosomal_S20p PF01649.18 gi|145591896|ref|YP_001153898.1| - 0.17 12.5 0.9 0.49 11.1 0.9 1.8 1 0 0 1 1 1 0 Ribosomal protein S20 DUF4200 PF13863.6 gi|145591896|ref|YP_001153898.1| - 0.26 11.7 9.3 0.37 11.2 8.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF713 PF05218.14 gi|145591896|ref|YP_001153898.1| - 0.38 10.5 12.5 0.68 9.6 12.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF713) DUF2959 PF11172.8 gi|145591896|ref|YP_001153898.1| - 0.53 10.4 9.1 0.85 9.7 9.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) Jnk-SapK_ap_N PF09744.9 gi|145591896|ref|YP_001153898.1| - 5.5 7.2 10.6 12 6.1 10.6 1.6 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 CPBP PF02517.16 gi|145591897|ref|YP_001153899.1| - 1.1e-14 54.6 8.1 1.1e-14 54.6 8.1 1.9 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease Polbeta PF18765.1 gi|145591900|ref|YP_001153902.1| - 0.00087 19.3 0.1 0.0016 18.5 0.1 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145591900|ref|YP_001153902.1| - 0.0037 17.5 0.1 0.005 17.1 0.1 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.14 gi|145591901|ref|YP_001153903.1| - 6.1e-18 65.1 0.8 6.3e-18 65.0 0.8 1.1 1 0 0 1 1 1 1 HEPN domain ANF_receptor PF01094.28 gi|145591902|ref|YP_001153904.1| - 6.4e-44 150.5 0.0 7.6e-44 150.3 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|145591902|ref|YP_001153904.1| - 2.1e-41 142.7 1.2 2.5e-41 142.5 1.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|145591902|ref|YP_001153904.1| - 2.9e-09 36.4 0.0 2.1e-08 33.6 0.0 1.9 1 1 0 1 1 1 1 Periplasmic binding protein domain Fe-ADH PF00465.19 gi|145591902|ref|YP_001153904.1| - 0.037 12.8 0.0 0.063 12.1 0.0 1.3 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase ABC_tran PF00005.27 gi|145591903|ref|YP_001153905.1| - 2.9e-28 99.1 0.0 3.9e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145591903|ref|YP_001153905.1| - 4.5e-09 36.5 1.0 0.00091 19.1 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|145591903|ref|YP_001153905.1| - 0.00022 21.2 0.2 0.0004 20.3 0.2 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|145591903|ref|YP_001153905.1| - 0.00028 20.5 0.1 0.00067 19.4 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|145591903|ref|YP_001153905.1| - 0.00029 20.4 0.1 0.0028 17.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145591903|ref|YP_001153905.1| - 0.001 19.6 0.0 0.0017 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|145591903|ref|YP_001153905.1| - 0.0027 17.3 0.0 0.14 11.8 0.1 2.4 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|145591903|ref|YP_001153905.1| - 0.0049 17.3 0.0 0.01 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|145591903|ref|YP_001153905.1| - 0.0051 16.4 0.3 0.011 15.4 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|145591903|ref|YP_001153905.1| - 0.011 16.0 0.0 0.046 14.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|145591903|ref|YP_001153905.1| - 0.019 14.1 0.1 0.032 13.3 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_30 PF13604.6 gi|145591903|ref|YP_001153905.1| - 0.021 14.6 0.1 0.045 13.5 0.1 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|145591903|ref|YP_001153905.1| - 0.027 13.3 0.1 2.9 6.6 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|145591903|ref|YP_001153905.1| - 0.032 14.3 0.1 0.062 13.4 0.1 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|145591903|ref|YP_001153905.1| - 0.045 13.8 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family cobW PF02492.19 gi|145591903|ref|YP_001153905.1| - 0.075 12.6 0.1 0.14 11.8 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_15 PF13175.6 gi|145591903|ref|YP_001153905.1| - 0.079 12.7 0.0 0.45 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|145591903|ref|YP_001153905.1| - 0.12 12.8 0.0 0.26 11.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|145591903|ref|YP_001153905.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|145591903|ref|YP_001153905.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AIG1 PF04548.16 gi|145591903|ref|YP_001153905.1| - 0.15 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_33 PF13671.6 gi|145591903|ref|YP_001153905.1| - 0.16 12.2 0.1 0.26 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145591903|ref|YP_001153905.1| - 0.21 11.3 0.0 0.42 10.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_pol_Rpb6 PF01192.22 gi|145591904|ref|YP_001153906.1| - 3.8e-12 45.9 0.0 7.1e-12 45.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 DSRB PF10781.9 gi|145591904|ref|YP_001153906.1| - 0.049 13.3 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 Dextransucrase DSRB Cpn60_TCP1 PF00118.24 gi|145591905|ref|YP_001153907.1| - 3.4e-182 606.5 6.8 4e-182 606.2 6.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family SHOCT PF09851.9 gi|145591905|ref|YP_001153907.1| - 0.028 14.2 0.1 0.087 12.6 0.1 1.9 1 0 0 1 1 1 0 Short C-terminal domain TPP_enzyme_C PF02775.21 gi|145591906|ref|YP_001153908.1| - 9.4e-23 80.7 0.3 1.6e-22 79.9 0.3 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|145591906|ref|YP_001153908.1| - 0.0028 16.9 0.0 0.0038 16.5 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Amidohydro_2 PF04909.14 gi|145591906|ref|YP_001153908.1| - 0.05 13.4 0.0 0.091 12.5 0.0 1.4 1 0 0 1 1 1 0 Amidohydrolase E1_dh PF00676.20 gi|145591906|ref|YP_001153908.1| - 0.052 12.5 0.7 0.1 11.5 0.7 1.4 1 0 0 1 1 1 0 Dehydrogenase E1 component POR_N PF01855.19 gi|145591907|ref|YP_001153909.1| - 4.3e-68 229.5 1.1 5.9e-68 229.1 1.1 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|145591907|ref|YP_001153909.1| - 1.8e-27 95.7 0.1 3.8e-27 94.6 0.1 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|145591907|ref|YP_001153909.1| - 0.00026 20.9 0.1 0.00078 19.3 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|145591908|ref|YP_001153910.1| - 5.4e-15 54.5 15.9 2.2e-08 33.5 5.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145591908|ref|YP_001153910.1| - 9.8e-12 44.4 12.7 3.2e-06 27.0 4.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145591908|ref|YP_001153910.1| - 1.1e-11 44.7 8.0 1.4e-11 44.3 8.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145591908|ref|YP_001153910.1| - 2.9e-10 40.6 8.0 4.6e-10 39.9 8.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145591908|ref|YP_001153910.1| - 9.1e-09 36.1 7.9 0.00011 23.1 2.7 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|145591908|ref|YP_001153910.1| - 1.6e-08 34.5 20.6 1.1e-05 25.5 10.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145591908|ref|YP_001153910.1| - 4.6e-08 32.7 11.1 0.00028 20.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145591908|ref|YP_001153910.1| - 5.3e-08 32.9 8.2 1.1e-07 31.9 8.5 1.3 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145591908|ref|YP_001153910.1| - 3.5e-06 27.5 5.4 0.014 15.9 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|145591908|ref|YP_001153910.1| - 3.9e-05 24.3 11.4 0.099 13.4 0.6 2.9 2 1 1 3 3 3 3 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|145591908|ref|YP_001153910.1| - 5e-05 23.7 10.0 0.022 15.2 1.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145591908|ref|YP_001153910.1| - 5.7e-05 23.3 13.0 23 5.8 13.0 2.2 1 1 0 1 1 1 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|145591908|ref|YP_001153910.1| - 0.00013 22.4 10.2 0.0028 18.2 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|145591908|ref|YP_001153910.1| - 0.0091 16.8 10.1 0.099 13.5 1.9 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145591908|ref|YP_001153910.1| - 0.03 15.3 16.2 0.079 13.9 6.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145591908|ref|YP_001153910.1| - 0.038 14.2 8.4 0.13 12.5 8.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|145591909|ref|YP_001153911.1| - 2.1e-29 102.9 1.0 6.7e-29 101.2 1.0 1.7 1 1 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|145591910|ref|YP_001153912.1| - 7.6e-37 126.7 0.7 1.3e-36 125.9 0.7 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|145591910|ref|YP_001153912.1| - 1.2e-24 86.7 0.0 3e-24 85.4 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|145591910|ref|YP_001153912.1| - 7.1e-23 80.6 0.0 1.5e-22 79.5 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain 2-Hacid_dh_C PF02826.19 gi|145591910|ref|YP_001153912.1| - 4.9e-05 22.7 0.1 0.27 10.6 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|145591910|ref|YP_001153912.1| - 0.00069 19.8 0.7 0.0092 16.2 0.3 2.7 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|145591910|ref|YP_001153912.1| - 0.029 14.7 1.9 2.9 8.2 0.2 2.8 2 0 0 2 2 2 0 TrkA-N domain Shikimate_DH PF01488.20 gi|145591910|ref|YP_001153912.1| - 0.072 13.2 0.0 0.22 11.6 0.0 1.8 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|145591910|ref|YP_001153912.1| - 0.073 13.1 1.8 6.9 6.6 0.0 2.6 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|145591910|ref|YP_001153912.1| - 0.084 12.8 0.5 0.25 11.2 0.5 1.8 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Urocanase PF01175.18 gi|145591910|ref|YP_001153912.1| - 0.12 12.0 0.1 0.24 11.0 0.1 1.5 1 0 0 1 1 1 0 Urocanase Rossmann-like domain Lactamase_B_2 PF12706.7 gi|145591911|ref|YP_001153913.1| - 7.2e-23 81.2 0.1 8.5e-23 80.9 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|145591911|ref|YP_001153913.1| - 3.9e-06 27.0 0.4 5.4e-06 26.6 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|145591911|ref|YP_001153913.1| - 0.0086 16.0 0.2 0.019 14.8 0.2 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF359 PF04019.12 gi|145591912|ref|YP_001153914.1| - 3.2e-27 94.6 0.0 4e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Thioredoxin_4 PF13462.6 gi|145591913|ref|YP_001153915.1| - 4.9e-21 75.6 0.0 5.9e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|145591913|ref|YP_001153915.1| - 0.002 17.9 0.9 0.7 9.6 0.1 2.4 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.6 gi|145591913|ref|YP_001153915.1| - 0.023 15.1 0.4 0.44 11.0 0.4 2.3 1 1 0 1 1 1 0 Thioredoxin-like domain P4Ha_N PF08336.11 gi|145591913|ref|YP_001153915.1| - 0.093 12.7 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region eRF1_1 PF03463.15 gi|145591915|ref|YP_001153917.1| - 6.9e-21 74.6 0.0 1.1e-20 73.9 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|145591915|ref|YP_001153917.1| - 2.1e-09 37.8 0.1 2.4e-08 34.4 0.0 2.7 2 1 0 2 2 2 1 eRF1 domain 3 Ras PF00071.22 gi|145591917|ref|YP_001153919.1| - 2.1e-08 33.9 0.9 1.8e-07 30.9 0.9 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|145591917|ref|YP_001153919.1| - 5.5e-08 32.5 0.0 6.9e-08 32.1 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1 PF01926.23 gi|145591917|ref|YP_001153919.1| - 9.8e-08 32.1 0.0 1.3e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|145591917|ref|YP_001153919.1| - 0.00025 20.5 0.0 0.00032 20.2 0.0 1.1 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|145591917|ref|YP_001153919.1| - 0.0028 17.9 0.2 0.062 13.5 0.2 2.1 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|145591917|ref|YP_001153919.1| - 0.0029 17.4 0.0 0.0088 15.8 0.0 1.7 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.6 gi|145591917|ref|YP_001153919.1| - 0.0029 17.4 0.0 0.004 16.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain FeoB_N PF02421.18 gi|145591917|ref|YP_001153919.1| - 0.012 15.1 0.0 0.18 11.3 0.0 2.1 1 1 0 1 1 1 0 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|145591917|ref|YP_001153919.1| - 0.012 15.5 0.2 0.75 9.7 0.1 2.4 2 1 1 3 3 3 0 RsgA GTPase Gtr1_RagA PF04670.12 gi|145591917|ref|YP_001153919.1| - 0.013 14.9 0.1 0.02 14.3 0.1 1.4 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Glyco_trans_1_2 PF13524.6 gi|145591917|ref|YP_001153919.1| - 0.036 14.5 0.0 0.056 13.8 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferases group 1 AAA_33 PF13671.6 gi|145591917|ref|YP_001153919.1| - 0.068 13.3 0.1 0.088 13.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|145591917|ref|YP_001153919.1| - 0.12 11.5 0.2 0.18 10.9 0.2 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.29 gi|145591917|ref|YP_001153919.1| - 0.13 12.7 0.0 0.3 11.5 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|145591918|ref|YP_001153920.1| - 1.8e-43 148.4 0.0 2e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 NTPase DUF2478 PF10649.9 gi|145591918|ref|YP_001153920.1| - 1.4e-08 34.5 0.0 2.6e-08 33.6 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2478) AAA_18 PF13238.6 gi|145591918|ref|YP_001153920.1| - 0.00043 20.8 0.1 0.00081 19.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145591918|ref|YP_001153920.1| - 0.00085 19.1 0.1 0.0018 18.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591918|ref|YP_001153920.1| - 0.0015 19.0 0.4 0.004 17.5 0.1 1.7 1 1 0 2 2 2 1 AAA ATPase domain Viral_helicase1 PF01443.18 gi|145591918|ref|YP_001153920.1| - 0.0017 18.2 0.3 0.053 13.3 0.3 2.1 1 1 0 1 1 1 1 Viral (Superfamily 1) RNA helicase MeaB PF03308.16 gi|145591918|ref|YP_001153920.1| - 0.0026 16.8 1.4 0.0049 15.9 0.9 1.8 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|145591918|ref|YP_001153920.1| - 0.0027 18.1 0.1 0.0063 16.9 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|145591918|ref|YP_001153920.1| - 0.0029 17.6 0.1 0.0044 17.1 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase NB-ARC PF00931.22 gi|145591918|ref|YP_001153920.1| - 0.003 16.8 0.0 0.005 16.0 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.6 gi|145591918|ref|YP_001153920.1| - 0.0048 16.7 0.0 0.0083 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|145591918|ref|YP_001153920.1| - 0.01 15.9 0.3 0.017 15.1 0.3 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.12 gi|145591918|ref|YP_001153920.1| - 0.017 15.1 0.1 0.064 13.2 0.1 1.8 2 0 0 2 2 2 0 NACHT domain DnaB_C PF03796.15 gi|145591918|ref|YP_001153920.1| - 0.022 14.1 0.1 0.098 12.0 0.0 1.9 1 1 2 3 3 3 0 DnaB-like helicase C terminal domain SRP54 PF00448.22 gi|145591918|ref|YP_001153920.1| - 0.025 14.2 0.1 0.18 11.4 0.1 2.0 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain DUF3388 PF11868.8 gi|145591918|ref|YP_001153920.1| - 0.032 13.6 0.1 0.05 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3388) cobW PF02492.19 gi|145591918|ref|YP_001153920.1| - 0.036 13.7 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|145591918|ref|YP_001153920.1| - 0.048 13.9 0.1 0.47 10.7 0.1 2.3 3 0 0 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|145591918|ref|YP_001153920.1| - 0.098 12.9 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|145591918|ref|YP_001153920.1| - 0.099 12.5 0.1 0.18 11.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase PF06745.13 gi|145591918|ref|YP_001153920.1| - 0.1 11.9 0.1 0.16 11.3 0.1 1.2 1 0 0 1 1 1 0 KaiC ATP_bind_1 PF03029.17 gi|145591918|ref|YP_001153920.1| - 0.11 12.3 0.1 0.16 11.7 0.1 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DAP3 PF10236.9 gi|145591918|ref|YP_001153920.1| - 0.12 11.5 0.3 0.24 10.5 0.1 1.5 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 IstB_IS21 PF01695.17 gi|145591918|ref|YP_001153920.1| - 0.13 12.0 0.0 9 6.0 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|145591918|ref|YP_001153920.1| - 0.17 11.6 0.0 0.45 10.2 0.0 1.7 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|145591918|ref|YP_001153920.1| - 0.17 12.0 0.1 0.31 11.2 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_19 PF13245.6 gi|145591918|ref|YP_001153920.1| - 0.21 11.9 0.0 1.4 9.3 0.1 2.0 2 0 0 2 2 2 0 AAA domain polyprenyl_synt PF00348.17 gi|145591919|ref|YP_001153921.1| - 7.6e-34 116.9 0.0 1.1e-33 116.4 0.0 1.3 1 0 0 1 1 1 1 Polyprenyl synthetase TrmB PF01978.19 gi|145591920|ref|YP_001153922.1| - 0.0003 20.6 0.2 0.00035 20.4 0.2 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.16 gi|145591920|ref|YP_001153922.1| - 0.00097 18.9 0.0 0.0011 18.7 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.7 gi|145591920|ref|YP_001153922.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 MarR family AbiEi_4 PF13338.6 gi|145591920|ref|YP_001153922.1| - 0.0012 19.0 0.0 0.0013 18.8 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_11 PF08279.12 gi|145591920|ref|YP_001153922.1| - 0.0042 17.0 0.0 0.0046 16.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain Lipoprotein_Ltp PF07553.11 gi|145591920|ref|YP_001153922.1| - 0.0056 16.9 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Host cell surface-exposed lipoprotein Sigma70_r3 PF04539.16 gi|145591920|ref|YP_001153922.1| - 0.0081 16.2 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-70 region 3 FaeA PF04703.12 gi|145591920|ref|YP_001153922.1| - 0.011 16.0 0.1 0.014 15.7 0.1 1.1 1 0 0 1 1 1 0 FaeA-like protein DUF4423 PF14394.6 gi|145591920|ref|YP_001153922.1| - 0.014 15.1 0.1 0.015 15.0 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RNA_pol_Rpc34 PF05158.12 gi|145591920|ref|YP_001153922.1| - 0.015 14.7 0.0 0.016 14.6 0.0 1.0 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit RuvB_C PF05491.13 gi|145591920|ref|YP_001153922.1| - 0.018 14.9 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain PaaX PF07848.12 gi|145591920|ref|YP_001153922.1| - 0.034 14.4 0.0 0.035 14.3 0.0 1.1 1 0 0 1 1 1 0 PaaX-like protein HTH_20 PF12840.7 gi|145591920|ref|YP_001153922.1| - 0.038 14.0 0.0 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|145591920|ref|YP_001153922.1| - 0.057 13.8 0.0 0.064 13.6 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator ANAPC2 PF08672.11 gi|145591920|ref|YP_001153922.1| - 0.087 13.3 0.0 0.17 12.4 0.0 1.6 1 1 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HTH_27 PF13463.6 gi|145591920|ref|YP_001153922.1| - 0.097 13.2 0.1 0.12 12.9 0.1 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain DMRL_synthase PF00885.19 gi|145591921|ref|YP_001153923.1| - 9.2e-36 122.8 2.3 1e-35 122.6 2.3 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Amidohydro_3 PF07969.11 gi|145591921|ref|YP_001153923.1| - 0.0026 17.3 0.1 0.003 17.1 0.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Usp PF00582.26 gi|145591921|ref|YP_001153923.1| - 0.033 14.7 4.1 0.32 11.5 0.5 2.1 2 0 0 2 2 2 0 Universal stress protein family Aminotran_4 PF01063.19 gi|145591922|ref|YP_001153924.1| - 1.2e-50 172.4 0.0 1.5e-50 172.2 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV PSII_Pbs31 PF18240.1 gi|145591922|ref|YP_001153924.1| - 0.18 12.3 0.0 0.38 11.2 0.0 1.5 1 0 0 1 1 1 0 Photosystem II Psb31 protein IlvN PF07991.12 gi|145591923|ref|YP_001153925.1| - 6.7e-76 253.4 0.1 1.1e-75 252.8 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|145591923|ref|YP_001153925.1| - 3.3e-55 186.3 0.3 4.5e-55 185.9 0.3 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|145591923|ref|YP_001153925.1| - 6e-07 30.0 0.1 1.6e-06 28.6 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|145591923|ref|YP_001153925.1| - 1.1e-06 28.9 0.0 2.2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|145591923|ref|YP_001153925.1| - 3.1e-06 26.7 0.1 7.4e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|145591923|ref|YP_001153925.1| - 0.00012 22.1 0.1 0.00035 20.7 0.1 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.16 gi|145591923|ref|YP_001153925.1| - 0.0092 15.6 1.0 0.11 12.1 1.0 2.2 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA ACT_5 PF13710.6 gi|145591924|ref|YP_001153926.1| - 4.2e-12 45.7 0.2 5e-12 45.5 0.2 1.1 1 0 0 1 1 1 1 ACT domain TPP_enzyme_N PF02776.18 gi|145591925|ref|YP_001153927.1| - 8.9e-45 152.4 0.7 5.3e-44 149.8 0.7 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|145591925|ref|YP_001153927.1| - 2.4e-41 140.7 0.0 4.4e-40 136.6 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|145591925|ref|YP_001153927.1| - 2.3e-40 137.9 0.0 5.4e-39 133.4 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SepF PF04472.12 gi|145591925|ref|YP_001153927.1| - 0.043 14.1 0.1 0.1 12.9 0.1 1.6 1 0 0 1 1 1 0 Cell division protein SepF POR_N PF01855.19 gi|145591925|ref|YP_001153927.1| - 0.11 12.2 0.5 0.33 10.7 0.2 1.8 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PIN_12 PF16289.5 gi|145591925|ref|YP_001153927.1| - 0.14 12.7 0.1 5 7.6 0.0 2.3 2 0 0 2 2 2 0 PIN domain TP_methylase PF00590.20 gi|145591925|ref|YP_001153927.1| - 0.58 10.1 3.5 2.9 7.8 0.7 3.2 3 1 0 3 3 3 0 Tetrapyrrole (Corrin/Porphyrin) Methylases NUDIX PF00293.28 gi|145591926|ref|YP_001153928.1| - 7.2e-15 55.2 0.3 1.1e-14 54.6 0.3 1.3 1 1 0 1 1 1 1 NUDIX domain Methyltransf_22 PF13383.6 gi|145591927|ref|YP_001153929.1| - 0.0032 17.1 0.7 0.0037 16.9 0.7 1.1 1 0 0 1 1 1 1 Methyltransferase domain Gemini_AL1 PF00799.20 gi|145591927|ref|YP_001153929.1| - 0.013 15.9 0.9 0.016 15.5 0.9 1.2 1 0 0 1 1 1 0 Geminivirus Rep catalytic domain Lactamase_B_6 PF16661.5 gi|145591929|ref|YP_001153931.1| - 5.3e-18 65.1 0.0 8.1e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Beta-Casp PF10996.8 gi|145591929|ref|YP_001153931.1| - 3.2e-14 53.1 0.0 8e-14 51.9 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|145591929|ref|YP_001153931.1| - 7.6e-14 51.4 0.1 1.9e-13 50.1 0.0 1.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|145591929|ref|YP_001153931.1| - 1.2e-11 45.0 0.5 1.9e-10 41.1 0.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|145591929|ref|YP_001153931.1| - 2.7e-11 43.4 0.0 4.4e-11 42.7 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Ribosomal_L26 PF16906.5 gi|145591930|ref|YP_001153932.1| - 4.7e-31 107.1 0.3 5.8e-31 106.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|145591930|ref|YP_001153932.1| - 2.3e-10 40.0 4.3 2.3e-10 40.0 4.3 2.1 2 0 0 2 2 2 1 KOW motif ribosomal_L24 PF17136.4 gi|145591930|ref|YP_001153932.1| - 0.27 11.7 4.2 0.58 10.6 0.3 2.3 1 1 1 2 2 2 0 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ribosomal_S4e PF00900.20 gi|145591931|ref|YP_001153933.1| - 4.4e-23 81.0 0.0 1.1e-22 79.7 0.0 1.7 2 0 0 2 2 2 1 Ribosomal family S4e RS4NT PF08071.12 gi|145591931|ref|YP_001153933.1| - 4.9e-11 42.6 4.6 4.9e-11 42.6 4.6 1.6 2 0 0 2 2 2 1 RS4NT (NUC023) domain S4 PF01479.25 gi|145591931|ref|YP_001153933.1| - 2.3e-09 36.8 0.4 2.3e-09 36.8 0.4 1.8 2 0 0 2 2 2 1 S4 domain Alginate_exp PF13372.6 gi|145591931|ref|YP_001153933.1| - 0.11 11.3 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Alginate export ABC_tran PF00005.27 gi|145591933|ref|YP_001153935.1| - 1.2e-30 106.8 0.0 1.6e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|145591933|ref|YP_001153935.1| - 1.3e-19 70.5 0.6 2.7e-19 69.4 0.6 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|145591933|ref|YP_001153935.1| - 3.8e-05 23.7 0.3 0.21 11.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|145591933|ref|YP_001153935.1| - 8.9e-05 22.8 0.7 0.0017 18.7 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|145591933|ref|YP_001153935.1| - 0.00022 21.6 0.0 0.00042 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|145591933|ref|YP_001153935.1| - 0.0053 16.5 0.1 0.0098 15.6 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|145591933|ref|YP_001153935.1| - 0.0094 14.7 0.1 0.2 10.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|145591933|ref|YP_001153935.1| - 0.018 14.4 0.6 0.49 9.7 0.1 2.1 2 0 0 2 2 2 0 KaiC SMC_N PF02463.19 gi|145591933|ref|YP_001153935.1| - 0.033 13.6 0.0 2.2 7.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.6 gi|145591933|ref|YP_001153935.1| - 0.033 14.4 0.0 0.086 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145591933|ref|YP_001153935.1| - 0.041 13.6 0.2 0.19 11.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|145591933|ref|YP_001153935.1| - 0.087 12.7 0.3 0.16 11.9 0.3 1.4 1 0 0 1 1 1 0 NACHT domain MobB PF03205.14 gi|145591933|ref|YP_001153935.1| - 0.12 12.2 0.2 0.2 11.5 0.2 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.17 gi|145591933|ref|YP_001153935.1| - 0.13 12.0 0.2 1 9.1 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein TniB PF05621.11 gi|145591933|ref|YP_001153935.1| - 0.17 11.3 0.2 8.2 5.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein DUF2249 PF10006.9 gi|145591933|ref|YP_001153935.1| - 0.2 11.5 1.2 0.29 11.0 0.1 1.8 2 0 0 2 2 1 0 Uncharacterized conserved protein (DUF2249) ABC_tran PF00005.27 gi|145591934|ref|YP_001153936.1| - 1.7e-27 96.6 0.0 2.4e-27 96.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|145591934|ref|YP_001153936.1| - 9.4e-18 64.5 0.1 1.5e-17 63.8 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|145591934|ref|YP_001153936.1| - 7.1e-07 29.3 0.8 8.6e-05 22.5 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145591934|ref|YP_001153936.1| - 8.2e-07 28.7 0.4 2e-05 24.1 0.4 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain IstB_IS21 PF01695.17 gi|145591934|ref|YP_001153936.1| - 0.00014 21.6 0.1 0.041 13.6 0.0 2.2 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|145591934|ref|YP_001153936.1| - 0.00033 20.9 0.1 0.0075 16.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|145591934|ref|YP_001153936.1| - 0.0017 17.8 0.2 0.056 12.8 0.1 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_29 PF13555.6 gi|145591934|ref|YP_001153936.1| - 0.0022 17.7 0.1 0.0039 16.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|145591934|ref|YP_001153936.1| - 0.0051 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|145591934|ref|YP_001153936.1| - 0.026 14.9 0.0 0.054 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.12 gi|145591934|ref|YP_001153936.1| - 0.034 14.0 0.1 0.089 12.7 0.0 1.7 2 1 0 2 2 2 0 NACHT domain AAA_5 PF07728.14 gi|145591934|ref|YP_001153936.1| - 0.044 13.8 0.1 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|145591934|ref|YP_001153936.1| - 0.069 12.5 0.0 0.31 10.4 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|145591934|ref|YP_001153936.1| - 0.092 13.0 0.0 0.35 11.1 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|145591934|ref|YP_001153936.1| - 0.1 12.3 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145591934|ref|YP_001153936.1| - 0.14 11.7 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|145591934|ref|YP_001153936.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain PfkB PF00294.24 gi|145591935|ref|YP_001153937.1| - 2.9e-11 43.2 0.1 8e-11 41.8 0.0 1.7 2 0 0 2 2 2 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|145591935|ref|YP_001153937.1| - 0.035 13.5 0.0 0.064 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase LAGLIDADG_3 PF14528.6 gi|145591935|ref|YP_001153937.1| - 0.17 12.2 0.0 2.2 8.7 0.0 2.2 2 0 0 2 2 2 0 LAGLIDADG-like domain CBS PF00571.28 gi|145591936|ref|YP_001153938.1| - 3.4e-31 107.5 5.5 1.3e-17 64.0 1.2 3.5 3 0 0 3 3 3 2 CBS domain HrcA_DNA-bdg PF03444.15 gi|145591936|ref|YP_001153938.1| - 8.2e-30 102.3 0.1 2.2e-29 100.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|145591936|ref|YP_001153938.1| - 4.9e-10 39.6 0.0 1.1e-09 38.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|145591936|ref|YP_001153938.1| - 0.00013 22.1 0.0 0.0003 20.9 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|145591936|ref|YP_001153938.1| - 0.00015 21.5 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_11 PF08279.12 gi|145591936|ref|YP_001153938.1| - 0.00021 21.2 0.5 0.00063 19.6 0.0 2.1 3 0 0 3 3 3 1 HTH domain Rio2_N PF09202.11 gi|145591936|ref|YP_001153938.1| - 0.0055 16.9 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal TrmB PF01978.19 gi|145591936|ref|YP_001153938.1| - 0.0058 16.5 1.3 0.1 12.5 0.1 2.8 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|145591936|ref|YP_001153938.1| - 0.0066 16.3 0.6 0.056 13.3 0.1 2.8 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family FeoC PF09012.10 gi|145591936|ref|YP_001153938.1| - 0.0091 16.0 0.0 0.022 14.8 0.0 1.7 1 0 0 1 1 1 1 FeoC like transcriptional regulator MarR PF01047.22 gi|145591936|ref|YP_001153938.1| - 0.0093 15.9 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|145591936|ref|YP_001153938.1| - 0.052 13.1 0.2 0.49 10.0 0.0 2.5 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|145591936|ref|YP_001153938.1| - 0.076 12.9 0.0 0.17 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|145591936|ref|YP_001153938.1| - 0.15 12.0 0.3 3.7 7.4 0.0 2.4 2 0 0 2 2 2 0 TFIIE alpha subunit DUF5343 PF17278.2 gi|145591936|ref|YP_001153938.1| - 0.15 12.1 0.0 0.38 10.8 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5343) 2-Hacid_dh_C PF02826.19 gi|145591937|ref|YP_001153939.1| - 1.7e-54 183.9 0.0 2.4e-54 183.4 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|145591937|ref|YP_001153939.1| - 1.7e-28 98.9 0.0 2.1e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|145591937|ref|YP_001153939.1| - 0.00073 19.2 0.0 0.0017 17.9 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain AdoHcyase_NAD PF00670.21 gi|145591937|ref|YP_001153939.1| - 0.0017 18.4 0.0 0.0035 17.4 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|145591937|ref|YP_001153939.1| - 0.012 16.2 0.0 0.051 14.2 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Gp_dh_N PF00044.24 gi|145591937|ref|YP_001153939.1| - 0.048 14.0 0.1 0.094 13.1 0.1 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|145591937|ref|YP_001153939.1| - 0.078 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|145591937|ref|YP_001153939.1| - 0.16 11.2 0.2 0.3 10.4 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Aminotran_5 PF00266.19 gi|145591938|ref|YP_001153940.1| - 2.5e-24 86.0 0.0 3.4e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|145591938|ref|YP_001153940.1| - 9.7e-05 21.1 0.0 0.00014 20.5 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|145591938|ref|YP_001153940.1| - 0.00093 18.5 0.0 0.02 14.1 0.0 2.1 1 1 0 1 1 1 1 Aminotransferase class I and II SHMT PF00464.19 gi|145591938|ref|YP_001153940.1| - 0.036 12.7 0.0 0.056 12.0 0.0 1.2 1 0 0 1 1 1 0 Serine hydroxymethyltransferase DUF89 PF01937.19 gi|145591939|ref|YP_001153941.1| - 9.8e-17 60.9 0.1 5.7e-15 55.1 0.1 2.5 2 1 0 2 2 2 2 Protein of unknown function DUF89 PKHD_C PF18331.1 gi|145591940|ref|YP_001153942.1| - 0.021 14.9 0.1 0.049 13.7 0.1 1.7 1 0 0 1 1 1 0 PKHD-type hydroxylase C-terminal domain Prefoldin PF02996.17 gi|145591940|ref|YP_001153942.1| - 0.088 12.7 1.4 0.88 9.5 0.2 2.5 2 1 1 3 3 3 0 Prefoldin subunit DUF3153 PF11353.8 gi|145591940|ref|YP_001153942.1| - 0.094 12.3 0.1 0.1 12.1 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3153) GreA_GreB_N PF03449.15 gi|145591940|ref|YP_001153942.1| - 0.14 12.3 1.3 2 8.6 0.0 2.8 3 0 0 3 3 3 0 Transcription elongation factor, N-terminal COMP PF11598.8 gi|145591940|ref|YP_001153942.1| - 0.41 11.2 2.4 6.5 7.3 0.4 2.4 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein tRNA_NucTransf2 PF09249.11 gi|145591941|ref|YP_001153943.1| - 5.5e-42 142.6 0.0 1.3e-41 141.3 0.0 1.7 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|145591941|ref|YP_001153943.1| - 2e-14 53.6 0.0 5.1e-14 52.3 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|145591941|ref|YP_001153943.1| - 1.8e-07 31.5 0.0 2.9e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|145591941|ref|YP_001153943.1| - 0.16 12.0 0.0 0.34 11.0 0.0 1.6 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase LigT_PEase PF02834.16 gi|145591942|ref|YP_001153944.1| - 8.4e-32 109.2 0.3 5e-18 65.1 0.1 2.0 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|145591942|ref|YP_001153944.1| - 2.2e-16 60.1 0.0 2.6e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|145591942|ref|YP_001153944.1| - 1e-13 51.6 0.0 1.5e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain MarR PF01047.22 gi|145591943|ref|YP_001153945.1| - 4.2e-07 29.8 0.0 2.6e-06 27.3 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|145591943|ref|YP_001153945.1| - 1.9e-05 25.0 0.0 2.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.12 gi|145591943|ref|YP_001153945.1| - 0.008 16.3 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|145591943|ref|YP_001153945.1| - 0.017 15.2 0.0 0.026 14.6 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|145591943|ref|YP_001153945.1| - 0.035 14.0 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family PadR PF03551.14 gi|145591943|ref|YP_001153945.1| - 0.081 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PaaX PF07848.12 gi|145591943|ref|YP_001153945.1| - 0.11 12.7 0.1 0.17 12.1 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein TF_Zn_Ribbon PF08271.12 gi|145591944|ref|YP_001153946.1| - 1.3e-13 50.2 0.6 2.2e-13 49.5 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|145591944|ref|YP_001153946.1| - 1.2e-10 41.3 0.1 3.4e-08 33.4 0.1 2.4 2 0 0 2 2 2 1 Transcription factor TFIIB repeat Prim_Zn_Ribbon PF08273.12 gi|145591944|ref|YP_001153946.1| - 0.0008 19.6 0.6 0.0013 19.0 0.6 1.3 1 0 0 1 1 1 1 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.7 gi|145591944|ref|YP_001153946.1| - 0.0027 17.6 0.2 0.0061 16.5 0.2 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|145591944|ref|YP_001153946.1| - 0.016 14.6 1.3 3.7 7.1 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145591944|ref|YP_001153946.1| - 0.025 14.5 1.4 0.062 13.2 1.4 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|145591944|ref|YP_001153946.1| - 0.028 14.8 0.4 0.053 13.9 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|145591944|ref|YP_001153946.1| - 0.075 12.7 1.6 0.14 11.9 1.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.7 gi|145591944|ref|YP_001153946.1| - 0.12 12.5 0.2 0.22 11.5 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-RRN7 PF11781.8 gi|145591944|ref|YP_001153946.1| - 0.13 12.0 6.5 3.4 7.4 0.9 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prok-RING_1 PF14446.6 gi|145591944|ref|YP_001153946.1| - 0.14 12.1 2.2 0.24 11.3 2.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.6 gi|145591944|ref|YP_001153946.1| - 0.28 11.1 4.4 0.6 10.1 4.4 1.5 1 0 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|145591944|ref|YP_001153946.1| - 0.47 10.6 2.6 4.4 7.5 0.2 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Gar1 PF04410.14 gi|145591945|ref|YP_001153947.1| - 4.1e-05 23.4 0.1 4.4e-05 23.3 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Ribosomal_S8e PF01201.22 gi|145591946|ref|YP_001153948.1| - 2.5e-28 98.9 0.7 2.8e-28 98.8 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|145591947|ref|YP_001153949.1| - 6.3e-18 65.5 0.2 7.5e-18 65.3 0.2 1.1 1 0 0 1 1 1 1 SRP19 protein TmoB PF06234.12 gi|145591947|ref|YP_001153949.1| - 0.096 12.8 0.1 1.7 8.8 0.1 2.1 2 0 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) RuvA_C PF07499.13 gi|145591947|ref|YP_001153949.1| - 0.11 12.9 1.2 0.11 12.9 0.0 1.6 2 0 0 2 2 2 0 RuvA, C-terminal domain Fe_dep_repress PF01325.19 gi|145591947|ref|YP_001153949.1| - 0.12 12.6 0.6 0.51 10.6 0.0 2.1 2 1 1 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain ATP_bind_1 PF03029.17 gi|145591948|ref|YP_001153950.1| - 1e-56 192.5 0.0 1.2e-56 192.2 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|145591948|ref|YP_001153950.1| - 5.6e-08 32.5 0.0 6.9e-07 29.0 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|145591948|ref|YP_001153950.1| - 3.3e-07 29.6 0.0 0.00015 20.8 0.0 2.6 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|145591948|ref|YP_001153950.1| - 1.9e-06 28.0 0.1 0.013 15.6 0.0 2.3 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|145591948|ref|YP_001153950.1| - 2.3e-06 27.6 1.0 0.2 11.5 0.1 3.8 3 1 0 3 3 3 2 RsgA GTPase PduV-EutP PF10662.9 gi|145591948|ref|YP_001153950.1| - 0.0001 22.0 0.5 0.5 10.1 0.0 3.6 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation CLP1_P PF16575.5 gi|145591948|ref|YP_001153950.1| - 0.0003 20.6 0.0 0.014 15.2 0.0 2.3 2 1 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 gi|145591948|ref|YP_001153950.1| - 0.001 18.3 0.0 0.0038 16.5 0.0 1.7 1 1 0 2 2 2 1 Anion-transporting ATPase cobW PF02492.19 gi|145591948|ref|YP_001153950.1| - 0.0014 18.3 0.3 0.99 9.0 0.1 2.4 2 1 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|145591948|ref|YP_001153950.1| - 0.0031 17.9 0.0 0.005 17.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.23 gi|145591948|ref|YP_001153950.1| - 0.0038 17.3 0.0 0.0052 16.8 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF815 PF05673.13 gi|145591948|ref|YP_001153950.1| - 0.0042 16.3 0.0 0.0068 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FeoB_N PF02421.18 gi|145591948|ref|YP_001153950.1| - 0.0048 16.4 0.2 0.66 9.5 0.2 2.5 3 0 0 3 3 2 1 Ferrous iron transport protein B Gtr1_RagA PF04670.12 gi|145591948|ref|YP_001153950.1| - 0.0066 15.8 1.1 0.039 13.3 1.1 1.9 1 1 0 1 1 1 1 Gtr1/RagA G protein conserved region NTPase_1 PF03266.15 gi|145591948|ref|YP_001153950.1| - 0.007 16.3 0.2 3.5 7.5 0.0 3.0 2 1 1 3 3 3 1 NTPase DUF87 PF01935.17 gi|145591948|ref|YP_001153950.1| - 0.0077 16.4 0.0 0.015 15.4 0.0 1.5 2 0 0 2 2 1 1 Helicase HerA, central domain SRP54 PF00448.22 gi|145591948|ref|YP_001153950.1| - 0.0097 15.5 0.0 0.033 13.8 0.0 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|145591948|ref|YP_001153950.1| - 0.012 16.1 0.0 0.022 15.3 0.0 1.7 1 1 0 1 1 1 0 ABC transporter MMR_HSR1_Xtn PF16897.5 gi|145591948|ref|YP_001153950.1| - 0.013 15.5 0.1 1.5 8.9 0.0 2.9 2 1 0 2 2 2 0 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|145591948|ref|YP_001153950.1| - 0.013 16.1 0.0 0.023 15.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|145591948|ref|YP_001153950.1| - 0.015 15.2 0.0 0.047 13.6 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.6 gi|145591948|ref|YP_001153950.1| - 0.017 14.8 0.4 0.041 13.6 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|145591948|ref|YP_001153950.1| - 0.019 14.4 0.3 0.7 9.3 0.1 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit APS_kinase PF01583.20 gi|145591948|ref|YP_001153950.1| - 0.044 13.7 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|145591948|ref|YP_001153950.1| - 0.045 13.5 0.0 0.062 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|145591948|ref|YP_001153950.1| - 0.047 13.9 0.0 0.083 13.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain PTS_IIB PF02302.17 gi|145591948|ref|YP_001153950.1| - 0.052 14.3 0.3 2.6 8.8 0.1 2.9 2 1 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit ParA PF10609.9 gi|145591948|ref|YP_001153950.1| - 0.077 12.4 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_PrkA PF08298.11 gi|145591948|ref|YP_001153950.1| - 0.082 11.8 0.0 0.45 9.4 0.0 1.9 1 1 1 2 2 2 0 PrkA AAA domain Roc PF08477.13 gi|145591948|ref|YP_001153950.1| - 0.086 13.1 0.1 3.8 7.8 0.0 2.4 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase TrwB_AAD_bind PF10412.9 gi|145591948|ref|YP_001153950.1| - 0.087 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_31 PF13614.6 gi|145591948|ref|YP_001153950.1| - 0.094 12.6 0.0 0.46 10.4 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|145591948|ref|YP_001153950.1| - 0.099 12.9 0.0 0.58 10.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|145591948|ref|YP_001153950.1| - 0.11 12.6 1.8 5.7 7.0 0.5 2.4 2 0 0 2 2 2 0 Dynamin family AAA_10 PF12846.7 gi|145591948|ref|YP_001153950.1| - 0.14 11.1 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain Parvo_NS1 PF01057.17 gi|145591948|ref|YP_001153950.1| - 0.16 11.1 0.1 0.41 9.7 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|145591948|ref|YP_001153950.1| - 0.17 11.1 0.0 0.37 10.1 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.22 gi|145591948|ref|YP_001153950.1| - 0.18 12.2 0.0 1.1 9.7 0.0 2.1 2 1 0 2 2 2 0 RNA helicase Ribosomal_L21e PF01157.18 gi|145591949|ref|YP_001153951.1| - 2.8e-32 110.6 0.9 3.2e-32 110.4 0.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Arteri_nsp7a PF16749.5 gi|145591949|ref|YP_001153951.1| - 0.067 13.4 0.1 0.22 11.7 0.1 1.7 1 1 1 2 2 2 0 Arterivirus nonstructural protein 7 alpha RNA_pol_Rpb4 PF03874.16 gi|145591950|ref|YP_001153952.1| - 1.1e-10 41.8 2.9 1.5e-10 41.5 2.9 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb4 DUF655 PF04919.12 gi|145591951|ref|YP_001153953.1| - 1.1e-50 172.1 2.0 1.3e-50 171.9 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|145591951|ref|YP_001153953.1| - 1.1e-05 25.6 0.8 2.7e-05 24.3 0.2 1.9 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|145591951|ref|YP_001153953.1| - 0.0012 19.0 0.2 0.0028 17.9 0.2 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif Lentivirus_VIF PF05851.11 gi|145591951|ref|YP_001153953.1| - 0.16 10.8 0.2 0.22 10.4 0.2 1.2 1 0 0 1 1 1 0 Lentivirus virion infectivity factor (VIF) eIF-5a PF01287.20 gi|145591952|ref|YP_001153954.1| - 4.6e-12 45.9 0.3 8e-12 45.1 0.3 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|145591952|ref|YP_001153954.1| - 1.5e-06 28.1 0.1 3.8e-06 26.8 0.1 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|145591952|ref|YP_001153954.1| - 0.0012 18.8 0.0 0.0027 17.7 0.0 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain PNP_UDP_1 PF01048.20 gi|145591953|ref|YP_001153955.1| - 4.7e-41 140.6 0.0 5.6e-41 140.3 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PelG PF16933.5 gi|145591954|ref|YP_001153956.1| - 0.083 11.7 0.0 0.1 11.4 0.0 1.0 1 0 0 1 1 1 0 Putative exopolysaccharide Exporter (EPS-E) SUI1 PF01253.22 gi|145591955|ref|YP_001153957.1| - 3.6e-17 62.7 0.1 6.7e-17 61.8 0.1 1.5 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|145591955|ref|YP_001153957.1| - 0.02 15.2 0.2 0.028 14.7 0.2 1.5 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) tRNA-synt_1d PF00750.19 gi|145591957|ref|YP_001153959.1| - 1.8e-31 109.4 0.1 1.2e-23 83.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|145591957|ref|YP_001153959.1| - 1.5e-27 96.1 1.7 1.5e-26 92.9 0.1 2.6 3 0 0 3 3 3 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|145591957|ref|YP_001153959.1| - 0.15 10.8 0.1 4.6 5.9 0.1 2.3 2 0 0 2 2 2 0 tRNA synthetases class I (M) Ribosomal_S28e PF01200.18 gi|145591958|ref|YP_001153960.1| - 1.1e-29 102.1 4.7 1.3e-29 102.0 4.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|145591959|ref|YP_001153961.1| - 1.3e-22 79.7 1.0 1.4e-22 79.6 1.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|145591959|ref|YP_001153961.1| - 0.003 17.5 0.3 0.0046 16.9 0.3 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif VATC PF18716.1 gi|145591959|ref|YP_001153961.1| - 0.032 14.1 2.3 0.072 12.9 2.3 1.6 1 1 0 1 1 1 0 Vms1-associating treble clef domain Ribosomal_L7Ae PF01248.26 gi|145591960|ref|YP_001153962.1| - 2.2e-28 97.8 1.0 2.9e-28 97.4 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|145591960|ref|YP_001153962.1| - 7.2e-06 25.8 0.1 1.1e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain RNase_P_pop3 PF08228.11 gi|145591960|ref|YP_001153962.1| - 0.0099 15.9 0.0 0.012 15.7 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit Pop3 BPD_transp_2 PF02653.16 gi|145591961|ref|YP_001153963.1| - 1.6e-39 135.7 32.6 1.9e-39 135.4 32.6 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component CRISPR_Cse2 PF09485.10 gi|145591961|ref|YP_001153963.1| - 0.088 13.3 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 CRISPR-associated protein Cse2 (CRISPR_cse2) BPD_transp_2 PF02653.16 gi|145591962|ref|YP_001153964.1| - 1.3e-36 126.2 41.9 1.5e-36 125.9 41.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ResB PF05140.14 gi|145591962|ref|YP_001153964.1| - 0.077 11.7 0.7 0.11 11.2 0.7 1.2 1 0 0 1 1 1 0 ResB-like family ANF_receptor PF01094.28 gi|145591963|ref|YP_001153965.1| - 1.7e-48 165.6 0.0 2e-48 165.3 0.0 1.0 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.6 gi|145591963|ref|YP_001153965.1| - 2.2e-48 165.7 8.7 2.6e-48 165.4 8.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.13 gi|145591963|ref|YP_001153965.1| - 4.6e-09 35.6 0.4 6.7e-09 35.1 0.4 1.2 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.6 gi|145591963|ref|YP_001153965.1| - 1.6e-05 24.1 0.0 0.00016 20.7 0.0 2.0 1 1 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.27 gi|145591964|ref|YP_001153966.1| - 7.6e-29 101.0 0.0 9.5e-29 100.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|145591964|ref|YP_001153966.1| - 1.1e-08 34.8 0.5 2.2e-08 33.8 0.5 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_23 PF13476.6 gi|145591964|ref|YP_001153966.1| - 1.6e-07 32.0 0.1 3.1e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|145591964|ref|YP_001153966.1| - 1.8e-07 31.3 0.0 0.00014 21.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145591964|ref|YP_001153966.1| - 1.3e-06 28.0 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|145591964|ref|YP_001153966.1| - 1.5e-05 24.8 0.5 0.00086 19.1 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|145591964|ref|YP_001153966.1| - 3.7e-05 23.6 0.0 6.6e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|145591964|ref|YP_001153966.1| - 5.1e-05 22.8 0.1 0.00044 19.8 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|145591964|ref|YP_001153966.1| - 0.00077 19.4 0.2 0.0029 17.5 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|145591964|ref|YP_001153966.1| - 0.0021 18.5 0.0 0.0032 17.9 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.6 gi|145591964|ref|YP_001153966.1| - 0.0049 16.5 0.3 0.025 14.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|145591964|ref|YP_001153966.1| - 0.006 16.5 0.2 0.0096 15.9 0.2 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea MobB PF03205.14 gi|145591964|ref|YP_001153966.1| - 0.0082 16.0 0.1 0.028 14.3 0.0 1.9 3 0 0 3 3 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|145591964|ref|YP_001153966.1| - 0.01 16.1 0.8 0.047 14.0 0.8 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|145591964|ref|YP_001153966.1| - 0.012 15.2 0.2 0.047 13.3 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.6 gi|145591964|ref|YP_001153966.1| - 0.013 14.2 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145591964|ref|YP_001153966.1| - 0.014 15.5 0.0 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|145591964|ref|YP_001153966.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145591964|ref|YP_001153966.1| - 0.02 15.3 0.4 0.083 13.3 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|145591964|ref|YP_001153966.1| - 0.02 15.1 0.1 0.064 13.4 0.1 2.0 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145591964|ref|YP_001153966.1| - 0.022 14.5 0.2 3.4 7.3 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein ABC_ATPase PF09818.9 gi|145591964|ref|YP_001153966.1| - 0.024 13.5 1.7 0.027 13.3 0.2 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class SRP54 PF00448.22 gi|145591964|ref|YP_001153966.1| - 0.029 14.0 0.2 0.051 13.2 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|145591964|ref|YP_001153966.1| - 0.032 14.0 0.0 0.045 13.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|145591964|ref|YP_001153966.1| - 0.035 12.9 0.1 0.051 12.4 0.1 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) T2SSE PF00437.20 gi|145591964|ref|YP_001153966.1| - 0.037 13.1 0.1 0.072 12.1 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_7 PF12775.7 gi|145591964|ref|YP_001153966.1| - 0.049 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_10 PF12846.7 gi|145591964|ref|YP_001153966.1| - 0.055 12.4 0.0 0.073 12.0 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain AAA_19 PF13245.6 gi|145591964|ref|YP_001153966.1| - 0.062 13.6 0.2 0.16 12.3 0.2 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145591964|ref|YP_001153966.1| - 0.07 13.1 0.1 0.17 11.8 0.1 1.6 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.15 gi|145591964|ref|YP_001153966.1| - 0.082 12.8 0.6 1.8 8.4 0.2 2.3 2 0 0 2 2 2 0 NTPase MMR_HSR1 PF01926.23 gi|145591964|ref|YP_001153966.1| - 0.11 12.6 0.4 0.22 11.6 0.4 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|145591964|ref|YP_001153966.1| - 0.13 12.2 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|145591964|ref|YP_001153966.1| - 0.14 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ATP-synt_ab PF00006.25 gi|145591964|ref|YP_001153966.1| - 0.15 11.7 0.1 0.16 11.6 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_11 PF13086.6 gi|145591964|ref|YP_001153966.1| - 0.2 11.4 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain NPCBM_assoc PF10633.9 gi|145591965|ref|YP_001153967.1| - 2e-17 63.2 22.3 2.4e-05 24.5 0.2 8.1 7 3 1 8 8 8 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|145591965|ref|YP_001153967.1| - 1e-06 28.9 6.1 0.28 11.5 0.1 4.7 5 0 0 5 5 5 3 CARDB Transglut_C PF00927.22 gi|145591965|ref|YP_001153967.1| - 0.0061 16.7 0.0 0.51 10.5 0.1 3.3 3 0 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain DUF11 PF01345.18 gi|145591965|ref|YP_001153967.1| - 0.023 15.0 0.5 0.023 15.0 0.5 4.2 3 1 1 4 4 4 0 Domain of unknown function DUF11 TMEM154 PF15102.6 gi|145591965|ref|YP_001153967.1| - 0.078 12.9 0.9 0.14 12.1 0.9 1.4 1 0 0 1 1 1 0 TMEM154 protein family Big_3 PF07523.12 gi|145591965|ref|YP_001153967.1| - 0.18 12.1 3.9 0.78 10.1 0.1 3.3 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) DUF4625 PF15418.6 gi|145591965|ref|YP_001153967.1| - 0.23 11.7 0.2 1.3e+02 2.8 0.0 3.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) DUF3869 PF12985.7 gi|145591965|ref|YP_001153967.1| - 1.8 9.0 11.4 5.2 7.5 0.8 4.9 5 0 0 5 5 5 0 Domain of unknown function (DUF3869) MFS_1 PF07690.16 gi|145591966|ref|YP_001153968.1| - 1.3e-50 172.4 41.8 1.8e-50 171.9 41.8 1.2 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|145591966|ref|YP_001153968.1| - 9.6e-12 44.5 7.5 9.6e-12 44.5 7.5 2.3 2 1 0 2 2 2 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|145591966|ref|YP_001153968.1| - 0.00018 21.0 5.2 0.00018 21.0 5.2 3.3 2 2 1 3 3 3 1 Uncharacterised MFS-type transporter YbfB MFS_2 PF13347.6 gi|145591966|ref|YP_001153968.1| - 0.0024 16.5 34.7 0.12 10.9 14.9 3.3 3 0 0 3 3 3 3 MFS/sugar transport protein DUF4535 PF15054.6 gi|145591966|ref|YP_001153968.1| - 0.19 11.5 0.7 0.41 10.4 0.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4535) Flp_Fap PF04964.14 gi|145591966|ref|YP_001153968.1| - 0.4 10.5 6.5 0.45 10.4 0.5 3.9 4 0 0 4 4 4 0 Flp/Fap pilin component MFS_3 PF05977.13 gi|145591966|ref|YP_001153968.1| - 3.5 5.9 16.7 0.038 12.4 4.1 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector MFS_1 PF07690.16 gi|145591967|ref|YP_001153969.1| - 5.4e-08 32.1 58.9 1.1e-05 24.6 25.3 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Methyltransf_11 PF08241.12 gi|145591968|ref|YP_001153970.1| - 1.1e-07 32.3 0.0 3.6e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145591968|ref|YP_001153970.1| - 3.3e-07 30.9 0.0 8.2e-07 29.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145591968|ref|YP_001153970.1| - 0.00024 21.0 0.0 0.00025 20.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145591968|ref|YP_001153970.1| - 0.011 15.6 0.1 0.018 14.9 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145591968|ref|YP_001153970.1| - 0.013 16.3 0.0 0.018 15.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ATPase PF06745.13 gi|145591969|ref|YP_001153971.1| - 2.5e-73 246.2 0.1 2.9e-73 246.0 0.1 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|145591969|ref|YP_001153971.1| - 1.4e-05 24.7 0.0 2.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|145591969|ref|YP_001153971.1| - 0.00031 20.2 0.0 0.00042 19.7 0.0 1.3 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain GvpD PF07088.11 gi|145591969|ref|YP_001153971.1| - 0.00083 18.1 0.1 0.15 10.7 0.0 2.1 2 0 0 2 2 2 2 GvpD gas vesicle protein Rad51 PF08423.11 gi|145591969|ref|YP_001153971.1| - 0.00089 18.6 0.0 0.0016 17.8 0.0 1.3 1 0 0 1 1 1 1 Rad51 AAA_22 PF13401.6 gi|145591969|ref|YP_001153971.1| - 0.15 12.4 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|145591970|ref|YP_001153972.1| - 7.4e-67 224.8 0.2 1.1e-66 224.2 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|145591970|ref|YP_001153972.1| - 1.8e-25 89.4 0.1 2e-24 86.1 0.1 2.5 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|145591970|ref|YP_001153972.1| - 4.8e-12 45.9 1.6 1e-11 44.9 0.1 2.4 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|145591970|ref|YP_001153972.1| - 3.1e-09 37.0 0.0 9.7e-09 35.4 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|145591970|ref|YP_001153972.1| - 2e-05 24.6 0.2 0.00015 21.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|145591970|ref|YP_001153972.1| - 5.8e-05 23.0 0.0 0.00015 21.7 0.0 1.7 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_17 PF13207.6 gi|145591970|ref|YP_001153972.1| - 6.2e-05 23.4 0.6 0.00042 20.8 0.1 2.4 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|145591970|ref|YP_001153972.1| - 0.00019 20.8 0.0 0.00033 20.0 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|145591970|ref|YP_001153972.1| - 0.00023 21.0 0.0 0.00048 19.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145591970|ref|YP_001153972.1| - 0.00023 21.4 0.0 0.00099 19.4 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.6 gi|145591970|ref|YP_001153972.1| - 0.00032 21.1 0.0 0.001 19.5 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain MobB PF03205.14 gi|145591970|ref|YP_001153972.1| - 0.00057 19.8 0.1 0.0017 18.3 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.19 gi|145591970|ref|YP_001153972.1| - 0.00061 19.4 1.8 0.0079 15.8 1.8 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ParA PF10609.9 gi|145591970|ref|YP_001153972.1| - 0.00082 18.9 0.0 0.0024 17.4 0.0 1.7 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MMR_HSR1 PF01926.23 gi|145591970|ref|YP_001153972.1| - 0.0014 18.7 0.3 0.0056 16.7 0.0 2.1 2 1 0 2 2 1 1 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|145591970|ref|YP_001153972.1| - 0.0015 18.8 0.0 0.0037 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|145591970|ref|YP_001153972.1| - 0.0017 17.9 0.1 0.0054 16.2 0.0 1.8 2 0 0 2 2 2 1 Chromatin associated protein KTI12 CLP1_P PF16575.5 gi|145591970|ref|YP_001153972.1| - 0.002 17.9 0.1 0.22 11.3 0.0 2.3 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Thymidylate_kin PF02223.17 gi|145591970|ref|YP_001153972.1| - 0.0027 17.4 0.7 0.0085 15.8 0.0 2.3 3 0 0 3 3 1 1 Thymidylate kinase 6PF2K PF01591.18 gi|145591970|ref|YP_001153972.1| - 0.0032 16.8 0.0 0.0068 15.7 0.0 1.5 1 0 0 1 1 1 1 6-phosphofructo-2-kinase MipZ PF09140.11 gi|145591970|ref|YP_001153972.1| - 0.0036 16.6 0.1 0.11 11.8 0.0 2.3 2 0 0 2 2 2 1 ATPase MipZ MeaB PF03308.16 gi|145591970|ref|YP_001153972.1| - 0.0045 16.0 0.1 0.022 13.8 0.0 2.0 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_33 PF13671.6 gi|145591970|ref|YP_001153972.1| - 0.0047 17.1 0.0 0.01 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145591970|ref|YP_001153972.1| - 0.0053 16.7 2.8 0.032 14.1 0.0 2.9 3 0 0 3 3 3 1 NTPase ArsA_ATPase PF02374.15 gi|145591970|ref|YP_001153972.1| - 0.011 15.0 0.4 0.13 11.5 0.0 2.6 2 1 0 2 2 2 0 Anion-transporting ATPase DUF1611 PF07755.11 gi|145591970|ref|YP_001153972.1| - 0.017 14.4 0.0 0.05 12.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1611_C) P-loop domain PduV-EutP PF10662.9 gi|145591970|ref|YP_001153972.1| - 0.021 14.6 0.4 4.6 7.0 0.0 2.5 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation G-alpha PF00503.20 gi|145591970|ref|YP_001153972.1| - 0.023 13.8 0.0 0.033 13.4 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.6 gi|145591970|ref|YP_001153972.1| - 0.024 15.2 0.0 0.066 13.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|145591970|ref|YP_001153972.1| - 0.037 14.0 0.0 0.082 12.9 0.0 1.7 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit LpxK PF02606.14 gi|145591970|ref|YP_001153972.1| - 0.039 13.1 0.3 0.12 11.5 0.1 1.7 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase ATP_bind_1 PF03029.17 gi|145591970|ref|YP_001153972.1| - 0.04 13.7 0.0 0.09 12.5 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|145591970|ref|YP_001153972.1| - 0.041 13.6 2.3 0.045 13.5 0.3 2.1 2 1 0 2 2 1 0 AAA domain AAA_5 PF07728.14 gi|145591970|ref|YP_001153972.1| - 0.043 13.8 0.1 0.11 12.5 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PFOR_II PF17147.4 gi|145591970|ref|YP_001153972.1| - 0.044 14.1 0.1 0.46 10.8 0.0 2.6 1 1 0 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II AAA_14 PF13173.6 gi|145591970|ref|YP_001153972.1| - 0.053 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.6 gi|145591970|ref|YP_001153972.1| - 0.061 13.1 1.6 0.68 9.7 0.2 2.3 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|145591970|ref|YP_001153972.1| - 0.065 12.6 0.1 0.17 11.2 0.1 1.8 1 1 0 1 1 1 0 KaiC LytR_C PF13399.6 gi|145591970|ref|YP_001153972.1| - 0.086 13.8 0.3 0.54 11.3 0.3 2.5 1 1 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator SRPRB PF09439.10 gi|145591970|ref|YP_001153972.1| - 0.098 12.1 0.5 13 5.2 0.1 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit IstB_IS21 PF01695.17 gi|145591970|ref|YP_001153972.1| - 0.11 12.2 0.2 2.1 8.1 0.2 2.6 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 gi|145591970|ref|YP_001153972.1| - 0.14 12.6 0.5 0.7 10.3 0.1 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|145591970|ref|YP_001153972.1| - 0.18 12.2 0.3 1.7 8.9 0.1 2.5 2 0 0 2 2 2 0 AAA domain PPDK_N PF01326.19 gi|145591970|ref|YP_001153972.1| - 0.18 11.1 1.1 0.31 10.3 0.1 1.8 2 0 0 2 2 2 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RNA_helicase PF00910.22 gi|145591970|ref|YP_001153972.1| - 0.18 12.2 0.1 1.7 9.1 0.1 2.2 1 1 0 1 1 1 0 RNA helicase RecX PF02631.16 gi|145591970|ref|YP_001153972.1| - 0.23 11.9 1.4 1.7 9.1 0.1 2.9 3 1 0 3 3 2 0 RecX family Bap31_Bap29_C PF18035.1 gi|145591970|ref|YP_001153972.1| - 1.6 8.8 4.4 0.56 10.3 0.6 2.2 2 0 0 2 2 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain Methyltrn_RNA_2 PF04013.12 gi|145591971|ref|YP_001153973.1| - 1.7e-06 27.9 0.0 2.3e-06 27.5 0.0 1.1 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase DUF4501 PF14946.6 gi|145591971|ref|YP_001153973.1| - 0.032 14.3 0.0 0.044 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4501) DUF4225 PF13988.6 gi|145591971|ref|YP_001153973.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) THUMP PF02926.17 gi|145591972|ref|YP_001153974.1| - 6.4e-09 36.1 0.2 1.2e-08 35.1 0.2 1.5 1 0 0 1 1 1 1 THUMP domain GATase PF00117.28 gi|145591973|ref|YP_001153975.1| - 3.6e-34 118.2 0.0 5.7e-34 117.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|145591973|ref|YP_001153975.1| - 1.4e-32 111.6 0.0 3.6e-32 110.3 0.0 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|145591973|ref|YP_001153975.1| - 5.9e-12 45.2 0.1 4.3e-08 32.6 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.13 gi|145591973|ref|YP_001153975.1| - 1e-08 35.2 3.2 2.7e-08 33.8 0.8 2.5 2 1 0 2 2 2 1 Peptidase C26 tRNA_Me_trans PF03054.16 gi|145591973|ref|YP_001153975.1| - 2.4e-05 23.3 0.1 0.0019 17.1 0.2 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|145591973|ref|YP_001153975.1| - 0.00022 20.8 0.0 0.0013 18.3 0.0 2.1 1 1 1 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|145591973|ref|YP_001153975.1| - 0.0003 20.6 0.0 0.00066 19.5 0.0 1.6 1 1 0 1 1 1 1 PP-loop family ThiI PF02568.14 gi|145591973|ref|YP_001153975.1| - 0.0013 18.3 0.2 0.015 14.9 0.1 2.4 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) G_glu_transpept PF01019.21 gi|145591974|ref|YP_001153976.1| - 3.9e-61 207.4 0.0 1.5e-59 202.2 0.0 2.2 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase Desulfoferrod_N PF06397.12 gi|145591975|ref|YP_001153977.1| - 0.017 14.7 2.6 0.051 13.2 2.6 1.9 1 1 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.10 gi|145591975|ref|YP_001153977.1| - 0.02 15.0 0.7 0.047 13.8 0.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DUF4428 PF14471.6 gi|145591975|ref|YP_001153977.1| - 0.042 13.8 0.1 0.071 13.0 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4428) TetR PF13972.6 gi|145591976|ref|YP_001153978.1| - 0.12 12.1 0.2 0.25 11.0 0.2 1.5 1 0 0 1 1 1 0 Bacterial transcriptional repressor RRN3 PF05327.11 gi|145591976|ref|YP_001153978.1| - 0.62 8.5 13.5 0.24 9.9 11.1 1.4 2 0 0 2 2 2 0 RNA polymerase I specific transcription initiation factor RRN3 Presenilin PF01080.17 gi|145591976|ref|YP_001153978.1| - 0.88 8.3 11.3 1.2 7.8 11.3 1.3 1 0 0 1 1 1 0 Presenilin CENP-B_dimeris PF09026.10 gi|145591976|ref|YP_001153978.1| - 2.2 8.7 0.0 2.2 8.7 0.0 3.2 1 1 2 3 3 3 0 Centromere protein B dimerisation domain TrmB PF01978.19 gi|145591977|ref|YP_001153979.1| - 3e-08 33.4 0.0 5.1e-08 32.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|145591977|ref|YP_001153979.1| - 5.1e-08 32.3 0.0 1e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|145591977|ref|YP_001153979.1| - 9e-08 31.9 0.2 2.1e-07 30.7 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|145591977|ref|YP_001153979.1| - 1.7e-07 31.2 0.3 3.7e-07 30.1 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|145591977|ref|YP_001153979.1| - 3.3e-06 26.9 0.0 7.1e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|145591977|ref|YP_001153979.1| - 8.9e-06 25.4 0.2 8.9e-06 25.4 0.2 2.2 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|145591977|ref|YP_001153979.1| - 0.00014 21.8 0.1 0.0024 17.8 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|145591977|ref|YP_001153979.1| - 0.00026 20.7 0.2 0.00045 20.0 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DUF2250 PF10007.9 gi|145591977|ref|YP_001153979.1| - 0.00043 20.4 0.0 0.00073 19.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_38 PF13936.6 gi|145591977|ref|YP_001153979.1| - 0.00043 20.0 0.4 0.00066 19.4 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|145591977|ref|YP_001153979.1| - 0.00047 19.9 0.2 0.00084 19.1 0.2 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|145591977|ref|YP_001153979.1| - 0.00054 19.6 0.2 0.0011 18.6 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|145591977|ref|YP_001153979.1| - 0.00079 19.3 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain YscJ_FliF PF01514.17 gi|145591977|ref|YP_001153979.1| - 0.00088 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Secretory protein of YscJ/FliF family TFIIE_alpha PF02002.17 gi|145591977|ref|YP_001153979.1| - 0.0014 18.5 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit Penicillinase_R PF03965.16 gi|145591977|ref|YP_001153979.1| - 0.0017 18.7 0.0 0.003 17.9 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|145591977|ref|YP_001153979.1| - 0.0018 18.7 0.1 0.0033 17.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|145591977|ref|YP_001153979.1| - 0.0019 18.4 0.0 0.0039 17.4 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RPA_C PF08784.11 gi|145591977|ref|YP_001153979.1| - 0.0057 17.3 0.1 0.019 15.6 0.0 1.8 2 0 0 2 2 2 1 Replication protein A C terminal HTH_29 PF13551.6 gi|145591977|ref|YP_001153979.1| - 0.0082 16.1 0.1 0.014 15.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn helix PheRS_DBD1 PF18552.1 gi|145591977|ref|YP_001153979.1| - 0.0098 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 PheRS DNA binding domain 1 Rrf2 PF02082.20 gi|145591977|ref|YP_001153979.1| - 0.011 16.0 0.1 0.027 14.8 0.1 1.6 1 0 0 1 1 1 0 Transcriptional regulator RP-C PF03428.13 gi|145591977|ref|YP_001153979.1| - 0.019 14.6 0.2 0.053 13.2 0.0 1.7 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_28 PF13518.6 gi|145591977|ref|YP_001153979.1| - 0.03 14.5 0.5 0.059 13.5 0.5 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|145591977|ref|YP_001153979.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_35 PF13693.6 gi|145591977|ref|YP_001153979.1| - 0.17 11.9 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding NTP_transf_3 PF12804.7 gi|145591978|ref|YP_001153980.1| - 8.1e-12 45.8 0.1 1.5e-11 45.0 0.1 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|145591978|ref|YP_001153980.1| - 4.6e-11 42.0 4.2 6.6e-08 32.0 0.6 4.0 1 1 2 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|145591978|ref|YP_001153980.1| - 5.3e-07 29.5 0.9 7.6e-05 22.4 0.9 2.4 1 1 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|145591978|ref|YP_001153980.1| - 0.015 15.0 6.2 0.053 13.3 0.2 3.7 3 1 1 4 4 4 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|145591979|ref|YP_001153981.1| - 5.4e-48 162.2 0.5 2.2e-26 92.2 0.4 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|145591979|ref|YP_001153981.1| - 6.4e-23 81.4 0.1 1.4e-22 80.3 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|145591979|ref|YP_001153981.1| - 2.1e-18 66.4 0.0 4.2e-18 65.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|145591979|ref|YP_001153981.1| - 2.7e-06 27.5 1.3 1.7e-05 24.8 0.3 2.6 1 1 1 2 2 2 1 SIS domain DUF2529 PF10740.9 gi|145591979|ref|YP_001153981.1| - 0.13 11.9 0.0 0.52 9.9 0.0 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2529) Svf1_C PF17187.4 gi|145591979|ref|YP_001153981.1| - 0.18 11.6 0.0 0.9 9.3 0.0 2.1 1 1 0 1 1 1 0 Svf1-like C-terminal lipocalin-like domain GATase_4 PF13230.6 gi|145591979|ref|YP_001153981.1| - 0.2 10.6 0.1 0.31 9.9 0.1 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II Pyr_excise PF03013.14 gi|145591979|ref|YP_001153981.1| - 0.21 11.6 0.0 1 9.4 0.0 2.0 2 0 0 2 2 2 0 Pyrimidine dimer DNA glycosylase DHHA1 PF02272.19 gi|145591980|ref|YP_001153982.1| - 2.7e-05 24.6 0.1 6.4e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 DHHA1 domain STT3 PF02516.14 gi|145591982|ref|YP_001153984.1| - 2.2e-17 63.2 30.3 3.4e-17 62.6 30.3 1.2 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Nop10p PF04135.12 gi|145591983|ref|YP_001153985.1| - 3e-23 81.6 1.9 4.1e-23 81.2 1.9 1.1 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DUF35_N PF12172.8 gi|145591983|ref|YP_001153985.1| - 0.0058 16.5 2.7 0.011 15.6 2.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1258 PF06869.12 gi|145591983|ref|YP_001153985.1| - 0.0064 16.0 0.0 0.0065 16.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1258) zinc-ribbons_6 PF07191.12 gi|145591983|ref|YP_001153985.1| - 0.013 15.5 0.5 0.019 14.9 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|145591983|ref|YP_001153985.1| - 0.017 15.1 2.8 0.25 11.3 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal PolC_DP2 PF03833.13 gi|145591983|ref|YP_001153985.1| - 0.018 13.0 0.1 0.018 13.0 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DZR PF12773.7 gi|145591983|ref|YP_001153985.1| - 0.021 14.8 0.8 0.035 14.1 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L32p PF01783.23 gi|145591983|ref|YP_001153985.1| - 0.064 13.5 1.6 0.12 12.6 1.6 1.5 1 0 0 1 1 1 0 Ribosomal L32p protein family NOB1_Zn_bind PF08772.11 gi|145591983|ref|YP_001153985.1| - 0.078 13.1 2.8 0.1 12.8 2.2 1.5 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|145591983|ref|YP_001153985.1| - 0.09 12.8 1.0 0.16 12.0 1.0 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|145591983|ref|YP_001153985.1| - 0.11 12.2 5.0 1.3 8.7 0.8 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145591983|ref|YP_001153985.1| - 0.16 12.1 5.4 0.62 10.2 5.4 1.9 1 1 0 1 1 1 0 Zinc ribbon domain NRDD PF13597.6 gi|145591983|ref|YP_001153985.1| - 0.21 10.3 0.9 0.3 9.8 0.9 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Auto_anti-p27 PF06677.12 gi|145591983|ref|YP_001153985.1| - 0.35 11.1 4.3 0.68 10.1 1.1 2.6 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ACC PF17848.1 gi|145591983|ref|YP_001153985.1| - 0.39 10.8 3.6 3.7 7.7 0.5 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-FPG_IleRS PF06827.14 gi|145591983|ref|YP_001153985.1| - 0.4 10.6 5.5 0.4 10.6 0.7 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-tcix PF14952.6 gi|145591983|ref|YP_001153985.1| - 0.64 9.7 5.9 6 6.6 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.6 gi|145591983|ref|YP_001153985.1| - 1.9 8.0 7.0 0.92 9.0 1.6 2.2 1 1 0 1 1 1 0 zinc-ribbon domain EIF_2_alpha PF07541.12 gi|145591984|ref|YP_001153986.1| - 3.5e-22 78.7 0.0 8.9e-22 77.4 0.0 1.7 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|145591984|ref|YP_001153986.1| - 1.9e-05 24.9 0.2 5.3e-05 23.5 0.1 1.8 1 1 0 1 1 1 1 S1 RNA binding domain Ribosomal_S27e PF01667.17 gi|145591985|ref|YP_001153987.1| - 1.4e-24 85.5 1.2 1.7e-24 85.3 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|145591985|ref|YP_001153987.1| - 0.00041 19.8 0.4 0.00054 19.4 0.4 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 gi|145591985|ref|YP_001153987.1| - 0.0011 18.9 0.2 0.0016 18.5 0.2 1.2 1 0 0 1 1 1 1 Zinc-ribbon DUF3797 PF12677.7 gi|145591985|ref|YP_001153987.1| - 0.0081 16.0 0.4 0.017 15.0 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|145591985|ref|YP_001153987.1| - 0.011 15.2 0.5 0.13 11.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.8 gi|145591985|ref|YP_001153987.1| - 0.018 14.9 1.1 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|145591985|ref|YP_001153987.1| - 0.033 14.2 0.8 0.042 13.8 0.8 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145591985|ref|YP_001153987.1| - 0.035 14.0 3.8 0.83 9.6 0.2 2.4 1 1 1 2 2 2 0 zinc-ribbon domain zf-RING_10 PF16685.5 gi|145591985|ref|YP_001153987.1| - 0.038 14.1 0.1 0.17 12.1 0.0 1.8 2 0 0 2 2 2 0 zinc RING finger of MSL2 HypA PF01155.19 gi|145591985|ref|YP_001153987.1| - 0.039 14.0 0.5 0.069 13.2 0.6 1.3 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|145591985|ref|YP_001153987.1| - 0.042 13.6 0.4 0.65 9.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|145591985|ref|YP_001153987.1| - 0.043 13.8 0.6 0.077 13.0 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon DUF1610 PF07754.11 gi|145591985|ref|YP_001153987.1| - 0.045 13.7 2.7 0.72 9.9 0.3 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2 PF00096.26 gi|145591985|ref|YP_001153987.1| - 0.062 13.8 0.4 5.1 7.7 0.2 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-RRN7 PF11781.8 gi|145591985|ref|YP_001153987.1| - 0.073 12.8 1.7 1.5 8.6 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-NADH-PPase PF09297.11 gi|145591985|ref|YP_001153987.1| - 0.076 12.7 1.0 0.55 9.9 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain TFIIS_C PF01096.18 gi|145591985|ref|YP_001153987.1| - 0.11 12.4 2.0 1.3 8.9 2.0 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|145591985|ref|YP_001153987.1| - 0.12 12.5 1.5 0.49 10.6 1.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.12 gi|145591985|ref|YP_001153987.1| - 0.3 10.7 5.8 4.8 6.9 0.5 3.0 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain CcmH PF03918.14 gi|145591985|ref|YP_001153987.1| - 0.5 9.6 2.3 1.7 8.0 2.3 1.7 1 1 0 1 1 1 0 Cytochrome C biogenesis protein DNA_RNApol_7kD PF03604.13 gi|145591985|ref|YP_001153987.1| - 0.52 10.0 5.3 2.8 7.7 0.5 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.6 gi|145591985|ref|YP_001153987.1| - 2.4 8.0 6.9 34 4.3 6.9 2.4 1 1 0 1 1 1 0 zinc-ribbon domain Mu-like_Com PF10122.9 gi|145591985|ref|YP_001153987.1| - 2.8 7.5 6.3 5.5 6.5 0.5 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com Ribosomal_L44 PF00935.19 gi|145591986|ref|YP_001153988.1| - 1.2e-26 92.9 9.7 1.6e-26 92.6 9.7 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-Mss51 PF13824.6 gi|145591986|ref|YP_001153988.1| - 0.0038 17.3 3.4 0.22 11.6 0.4 2.2 1 1 0 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 RNA_POL_M_15KD PF02150.16 gi|145591986|ref|YP_001153988.1| - 0.0077 16.1 1.8 0.077 12.9 0.1 2.3 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit DUF2225 PF09986.9 gi|145591986|ref|YP_001153988.1| - 0.0084 15.8 2.1 0.012 15.4 2.1 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2225) zf-ribbon_3 PF13248.6 gi|145591986|ref|YP_001153988.1| - 0.0092 15.4 1.6 1.9 8.0 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|145591986|ref|YP_001153988.1| - 0.01 15.5 1.6 1.5 8.7 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Ski_Sno PF02437.17 gi|145591986|ref|YP_001153988.1| - 0.017 14.8 0.5 0.054 13.2 0.2 1.8 2 0 0 2 2 2 0 SKI/SNO/DAC family Zn_Tnp_IS1595 PF12760.7 gi|145591986|ref|YP_001153988.1| - 0.018 15.0 0.8 1.9 8.5 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L33 PF00471.20 gi|145591986|ref|YP_001153988.1| - 0.037 14.5 0.4 0.037 14.5 0.4 2.5 2 1 0 2 2 2 0 Ribosomal protein L33 zf-LITAF-like PF10601.9 gi|145591986|ref|YP_001153988.1| - 0.04 14.2 1.4 0.32 11.3 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|145591986|ref|YP_001153988.1| - 0.041 13.6 2.3 0.079 12.7 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Elf1 PF05129.13 gi|145591986|ref|YP_001153988.1| - 0.045 13.8 4.0 0.26 11.4 1.3 2.2 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like NOB1_Zn_bind PF08772.11 gi|145591986|ref|YP_001153988.1| - 0.063 13.5 6.9 0.66 10.2 1.0 2.1 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-DNL PF05180.12 gi|145591986|ref|YP_001153988.1| - 0.07 13.1 5.2 0.34 10.9 0.6 2.2 2 0 0 2 2 2 0 DNL zinc finger HNH_5 PF14279.6 gi|145591986|ref|YP_001153988.1| - 0.13 12.2 1.6 1.9 8.4 0.1 2.2 2 0 0 2 2 2 0 HNH endonuclease zf_UBZ PF18439.1 gi|145591986|ref|YP_001153988.1| - 0.14 11.8 2.0 6.9 6.4 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1660 PF07874.11 gi|145591986|ref|YP_001153988.1| - 0.23 12.0 2.4 1 9.9 0.1 2.1 2 0 0 2 2 2 0 Prophage protein (DUF1660) Lar_restr_allev PF14354.6 gi|145591986|ref|YP_001153988.1| - 0.24 11.8 3.8 2.7 8.5 3.9 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar Rubredoxin_2 PF18073.1 gi|145591986|ref|YP_001153988.1| - 0.39 10.5 4.6 0.82 9.5 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain CpXC PF14353.6 gi|145591986|ref|YP_001153988.1| - 0.42 10.7 2.7 5 7.2 0.2 2.1 1 1 0 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|145591986|ref|YP_001153988.1| - 0.43 10.1 2.4 13 5.4 0.4 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf_C2H2_10 PF18414.1 gi|145591986|ref|YP_001153988.1| - 0.99 9.0 3.5 7.6 6.2 0.4 2.3 2 0 0 2 2 2 0 C2H2 type zinc-finger TFIIS_C PF01096.18 gi|145591986|ref|YP_001153988.1| - 2 8.3 6.2 2 8.3 0.5 2.4 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) DNA_primase_S PF01896.19 gi|145591988|ref|YP_001153990.1| - 2.4e-21 76.6 0.0 6.3e-21 75.2 0.0 1.7 1 1 0 1 1 1 1 DNA primase small subunit PCNA_N PF00705.18 gi|145591989|ref|YP_001153991.1| - 4.5e-13 49.0 0.0 9.5e-12 44.7 0.0 2.1 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|145591989|ref|YP_001153991.1| - 1.9e-12 47.5 0.8 4.6e-12 46.2 0.2 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.16 gi|145591989|ref|YP_001153991.1| - 2.1e-06 27.0 1.6 0.00047 19.3 0.5 2.5 1 1 2 3 3 3 3 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.13 gi|145591989|ref|YP_001153991.1| - 0.00055 19.5 0.1 0.00082 18.9 0.1 1.4 1 1 0 1 1 1 1 Rad9 CusF_Ec PF11604.8 gi|145591989|ref|YP_001153991.1| - 0.12 12.4 0.4 0.86 9.6 0.0 2.4 1 1 1 2 2 2 0 Copper binding periplasmic protein CusF TFIIS_C PF01096.18 gi|145591990|ref|YP_001153992.1| - 4.4e-22 77.6 9.0 4e-21 74.6 4.5 2.2 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|145591990|ref|YP_001153992.1| - 4.6e-07 29.7 6.0 0.00056 19.8 3.3 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|145591990|ref|YP_001153992.1| - 5.6e-07 29.4 0.3 0.0093 15.9 0.0 2.8 2 1 0 2 2 2 2 PhnA Zinc-Ribbon RNA_POL_M_15KD PF02150.16 gi|145591990|ref|YP_001153992.1| - 1.1e-06 28.4 6.4 4.4e-06 26.5 0.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|145591990|ref|YP_001153992.1| - 1.3e-05 24.6 4.5 0.0092 15.5 0.2 2.7 2 2 0 2 2 2 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|145591990|ref|YP_001153992.1| - 0.00024 21.1 7.9 1 9.5 0.5 3.4 3 0 0 3 3 3 2 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|145591990|ref|YP_001153992.1| - 0.0005 19.7 14.8 0.51 10.1 0.2 4.1 4 0 0 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145591990|ref|YP_001153992.1| - 0.00068 19.5 6.0 0.15 12.0 1.8 2.4 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Lar_restr_allev PF14354.6 gi|145591990|ref|YP_001153992.1| - 0.00085 19.7 3.0 0.22 11.9 1.3 2.2 2 0 0 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.7 gi|145591990|ref|YP_001153992.1| - 0.0018 18.3 6.3 0.63 10.1 0.1 2.7 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|145591990|ref|YP_001153992.1| - 0.0024 17.9 5.7 0.14 12.2 0.1 3.1 2 1 1 3 3 3 1 Transposase zinc-binding domain DUF4379 PF14311.6 gi|145591990|ref|YP_001153992.1| - 0.0025 18.2 6.3 0.66 10.4 0.7 3.2 3 0 0 3 3 3 1 Probable Zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|145591990|ref|YP_001153992.1| - 0.0026 17.9 4.3 4.2 7.6 0.1 3.2 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.6 gi|145591990|ref|YP_001153992.1| - 0.0039 17.1 9.9 0.054 13.4 0.7 3.3 3 0 0 3 3 3 1 zinc-ribbon domain UPF0547 PF10571.9 gi|145591990|ref|YP_001153992.1| - 0.0043 17.1 11.9 1.8 8.7 0.2 3.9 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|145591990|ref|YP_001153992.1| - 0.013 14.9 13.5 0.59 9.6 0.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain DUF2387 PF09526.10 gi|145591990|ref|YP_001153992.1| - 0.015 15.4 5.8 1.4 9.2 1.2 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_10 PF10058.9 gi|145591990|ref|YP_001153992.1| - 0.025 14.3 5.3 4.9 7.0 0.0 3.1 2 1 1 3 3 3 0 Predicted integral membrane zinc-ribbon metal-binding protein Opy2 PF09463.10 gi|145591990|ref|YP_001153992.1| - 0.032 14.5 3.1 13 6.3 0.1 3.3 3 0 0 3 3 3 0 Opy2 protein zf-NADH-PPase PF09297.11 gi|145591990|ref|YP_001153992.1| - 0.034 13.8 8.9 2.5 7.8 0.0 4.0 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|145591990|ref|YP_001153992.1| - 0.04 14.7 5.4 0.96 10.2 5.4 2.3 1 1 0 1 1 1 0 zinc-ribbon family Ogr_Delta PF04606.12 gi|145591990|ref|YP_001153992.1| - 0.048 13.7 7.8 0.21 11.6 2.0 2.6 2 2 0 2 2 2 0 Ogr/Delta-like zinc finger Baculo_LEF5_C PF11792.8 gi|145591990|ref|YP_001153992.1| - 0.049 13.3 0.1 0.049 13.3 0.1 2.8 2 1 1 3 3 3 0 Baculoviridae late expression factor 5 C-terminal domain HypA PF01155.19 gi|145591990|ref|YP_001153992.1| - 0.054 13.5 4.4 3.2 7.8 4.4 2.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-IS66 PF13005.7 gi|145591990|ref|YP_001153992.1| - 0.062 13.7 4.8 18 5.8 0.1 3.5 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|145591990|ref|YP_001153992.1| - 0.088 12.2 10.8 0.8 9.1 0.6 3.1 2 1 2 4 4 4 0 Transcription factor zinc-finger IBR PF01485.21 gi|145591990|ref|YP_001153992.1| - 0.09 13.0 7.0 35 4.7 7.0 2.7 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain A2L_zn_ribbon PF08792.10 gi|145591990|ref|YP_001153992.1| - 0.1 12.3 8.9 0.47 10.2 0.1 3.4 3 0 0 3 3 3 0 A2L zinc ribbon domain GcpE PF04551.14 gi|145591990|ref|YP_001153992.1| - 0.14 11.2 0.8 0.39 9.7 0.1 1.8 1 1 1 2 2 2 0 GcpE protein zf-Mss51 PF13824.6 gi|145591990|ref|YP_001153992.1| - 0.33 11.1 6.5 7.5 6.7 0.1 2.5 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF35_N PF12172.8 gi|145591990|ref|YP_001153992.1| - 0.45 10.4 9.7 4.8 7.2 0.2 3.6 4 0 0 4 4 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|145591990|ref|YP_001153992.1| - 0.47 10.2 8.1 4.2 7.1 0.3 3.4 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit YhfH PF14149.6 gi|145591990|ref|YP_001153992.1| - 0.5 10.4 5.7 33 4.6 0.0 3.4 3 0 0 3 3 3 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|145591990|ref|YP_001153992.1| - 0.58 9.9 11.1 2.3 8.0 1.2 3.3 3 0 0 3 3 3 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|145591990|ref|YP_001153992.1| - 0.78 9.7 13.8 5.4 7.0 4.4 3.5 2 2 0 2 2 2 0 Nudix N-terminal zf_C2H2_10 PF18414.1 gi|145591990|ref|YP_001153992.1| - 0.97 9.0 10.4 1.9 8.1 0.4 3.1 3 0 0 3 3 3 0 C2H2 type zinc-finger Methyltransf_13 PF08421.11 gi|145591990|ref|YP_001153992.1| - 1.1 9.5 4.8 19 5.6 0.1 3.0 2 1 1 3 3 3 0 Putative zinc binding domain CpXC PF14353.6 gi|145591990|ref|YP_001153992.1| - 1.3 9.1 8.3 3.8 7.6 0.1 3.0 1 1 0 2 2 2 0 CpXC protein FdhE PF04216.12 gi|145591990|ref|YP_001153992.1| - 1.3 8.9 5.0 0.24 11.3 0.9 1.7 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation Rubredoxin PF00301.20 gi|145591990|ref|YP_001153992.1| - 2.1 8.5 8.4 35 4.5 0.1 3.3 3 0 0 3 3 3 0 Rubredoxin DUF2072 PF09845.9 gi|145591990|ref|YP_001153992.1| - 2.2 8.5 8.4 2.1 8.6 0.2 3.0 2 1 1 3 3 3 0 Zn-ribbon containing protein Zn_ribbon_SprT PF17283.2 gi|145591990|ref|YP_001153992.1| - 2.4 8.1 9.5 30 4.6 5.4 2.9 2 1 1 3 3 3 0 SprT-like zinc ribbon domain zf_UBZ PF18439.1 gi|145591990|ref|YP_001153992.1| - 6.2 6.5 8.3 31 4.3 0.2 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Ribosomal_S19e PF01090.19 gi|145591991|ref|YP_001153993.1| - 9.9e-51 171.0 0.0 1.1e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|145591991|ref|YP_001153993.1| - 0.0016 18.3 0.0 0.017 15.0 0.0 2.1 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain HTH_45 PF14947.6 gi|145591991|ref|YP_001153993.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.16 gi|145591991|ref|YP_001153993.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 HemN C-terminal domain HTH_12 PF08461.10 gi|145591991|ref|YP_001153993.1| - 0.091 12.7 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain dsDNA_bind PF01984.20 gi|145591992|ref|YP_001153994.1| - 8.8e-22 77.5 10.0 1.1e-21 77.1 10.0 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SDA1 PF05285.12 gi|145591992|ref|YP_001153994.1| - 0.00018 21.1 2.2 0.00018 21.1 2.2 1.1 1 0 0 1 1 1 1 SDA1 DUF5401 PF17380.2 gi|145591992|ref|YP_001153994.1| - 0.014 13.5 8.7 0.015 13.4 8.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5401) FHIPEP PF00771.20 gi|145591992|ref|YP_001153994.1| - 0.074 11.5 2.6 0.084 11.3 2.6 1.0 1 0 0 1 1 1 0 FHIPEP family Ribosomal_L39 PF00832.20 gi|145591993|ref|YP_001153995.1| - 1.6e-17 62.8 11.4 2e-17 62.5 11.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein PcrB PF01884.17 gi|145591994|ref|YP_001153996.1| - 2.3e-48 164.6 0.0 2.8e-48 164.3 0.0 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|145591994|ref|YP_001153996.1| - 1e-05 25.2 0.0 2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein B12-binding PF02310.19 gi|145591994|ref|YP_001153996.1| - 0.0023 18.0 0.7 1.5 8.9 0.1 3.2 3 1 1 4 4 4 2 B12 binding domain IMPDH PF00478.25 gi|145591994|ref|YP_001153996.1| - 0.058 12.4 0.1 0.66 8.9 0.0 2.0 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DpaA_N PF16924.5 gi|145591994|ref|YP_001153996.1| - 0.059 13.5 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain TMP-TENI PF02581.17 gi|145591994|ref|YP_001153996.1| - 0.074 12.4 0.2 0.31 10.4 0.0 2.1 3 0 0 3 3 3 0 Thiamine monophosphate synthase Elf1 PF05129.13 gi|145591995|ref|YP_001153997.1| - 5.5e-16 58.4 0.0 6.6e-16 58.1 0.0 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|145591995|ref|YP_001153997.1| - 2.4e-05 24.6 0.4 3.3e-05 24.2 0.4 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|145591995|ref|YP_001153997.1| - 0.00064 19.2 1.6 0.001 18.6 1.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-C4_Topoisom PF01396.19 gi|145591995|ref|YP_001153997.1| - 0.0022 17.7 1.0 0.0047 16.7 1.0 1.6 1 0 0 1 1 1 1 Topoisomerase DNA binding C4 zinc finger zf-RING_7 PF02591.15 gi|145591995|ref|YP_001153997.1| - 0.0027 17.9 0.3 0.12 12.6 0.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|145591995|ref|YP_001153997.1| - 0.0034 17.3 0.3 2.7 8.0 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|145591995|ref|YP_001153997.1| - 0.005 16.2 3.0 0.11 11.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|145591995|ref|YP_001153997.1| - 0.0062 16.5 0.3 0.009 16.0 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|145591995|ref|YP_001153997.1| - 0.0072 16.8 3.5 1.1 9.8 0.1 2.3 1 1 1 2 2 2 2 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|145591995|ref|YP_001153997.1| - 0.009 16.0 2.1 0.18 11.8 2.1 2.1 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|145591995|ref|YP_001153997.1| - 0.0093 16.2 3.2 0.11 12.7 0.4 2.2 1 1 1 2 2 2 1 Ribosomal L32p protein family RNA_POL_M_15KD PF02150.16 gi|145591995|ref|YP_001153997.1| - 0.013 15.4 0.3 0.02 14.8 0.3 1.3 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|145591995|ref|YP_001153997.1| - 0.014 15.0 0.5 0.11 12.2 0.5 2.2 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.20 gi|145591995|ref|YP_001153997.1| - 0.016 15.2 2.0 0.24 11.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|145591995|ref|YP_001153997.1| - 0.018 15.2 0.6 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_10 PF10058.9 gi|145591995|ref|YP_001153997.1| - 0.028 14.2 1.0 4 7.3 0.1 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein OrfB_Zn_ribbon PF07282.11 gi|145591995|ref|YP_001153997.1| - 0.029 14.3 0.6 0.048 13.6 0.6 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|145591995|ref|YP_001153997.1| - 0.04 13.6 1.8 4.6 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|145591995|ref|YP_001153997.1| - 0.042 13.8 1.4 1.8 8.6 0.2 2.4 2 1 0 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_5 PF13719.6 gi|145591995|ref|YP_001153997.1| - 0.049 13.4 0.3 0.089 12.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|145591995|ref|YP_001153997.1| - 0.058 13.1 5.4 0.54 10.1 5.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|145591995|ref|YP_001153997.1| - 0.081 12.9 2.0 0.36 10.8 2.0 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Desulfoferrod_N PF06397.12 gi|145591995|ref|YP_001153997.1| - 0.094 12.4 2.1 0.14 11.8 2.1 1.2 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain DUF678 PF05077.12 gi|145591995|ref|YP_001153997.1| - 0.13 12.4 0.2 0.2 11.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF678) zf_UBZ PF18439.1 gi|145591995|ref|YP_001153997.1| - 0.16 11.6 0.3 3.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|145591995|ref|YP_001153997.1| - 0.21 11.5 2.9 0.44 10.5 1.8 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain Ogr_Delta PF04606.12 gi|145591995|ref|YP_001153997.1| - 4.3 7.4 5.2 26 4.9 5.2 2.0 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger MoeA_N PF03453.17 gi|145591996|ref|YP_001153998.1| - 2.3e-31 108.7 1.5 2.3e-31 108.7 1.5 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|145591996|ref|YP_001153998.1| - 7.3e-11 41.9 0.2 4.2e-10 39.4 0.1 2.2 2 1 0 2 2 2 1 Probable molybdopterin binding domain Pribosyltran PF00156.27 gi|145591997|ref|YP_001153999.1| - 1.2e-19 70.3 0.0 1.7e-19 69.9 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|145591997|ref|YP_001153999.1| - 0.0057 16.1 0.0 0.0074 15.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase SWIM PF04434.17 gi|145591999|ref|YP_001154001.1| - 0.0036 16.9 0.2 0.006 16.2 0.2 1.3 1 0 0 1 1 1 1 SWIM zinc finger DUF5572 PF17733.1 gi|145591999|ref|YP_001154001.1| - 0.18 11.6 0.2 14 5.7 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5572) Inositol_P PF00459.25 gi|145592000|ref|YP_001154002.1| - 1.3e-17 64.2 0.0 1.5e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|145592000|ref|YP_001154002.1| - 0.0051 16.3 0.0 0.0082 15.6 0.0 1.3 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain PRC2_HTH_1 PF18118.1 gi|145592000|ref|YP_001154002.1| - 0.16 12.8 0.0 0.29 11.9 0.0 1.3 1 0 0 1 1 1 0 Polycomb repressive complex 2 tri-helical domain DUF3900 PF13039.6 gi|145592000|ref|YP_001154002.1| - 0.2 11.5 0.0 0.29 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3900) ATPase PF06745.13 gi|145592001|ref|YP_001154003.1| - 1.4e-05 24.5 0.0 0.0018 17.7 0.0 2.8 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|145592001|ref|YP_001154003.1| - 1.9e-05 24.4 0.0 0.00015 21.6 0.0 2.4 3 1 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|145592001|ref|YP_001154003.1| - 2.1e-05 24.8 0.0 6.8e-05 23.2 0.0 1.9 2 1 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|145592001|ref|YP_001154003.1| - 0.00019 21.4 0.2 0.0055 16.6 0.2 2.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|145592001|ref|YP_001154003.1| - 0.00026 20.6 0.1 0.0024 17.5 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145592001|ref|YP_001154003.1| - 0.00032 21.1 0.0 0.00072 20.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|145592001|ref|YP_001154003.1| - 0.0012 19.2 0.0 0.0022 18.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Ligase_CoA PF00549.19 gi|145592001|ref|YP_001154003.1| - 0.0031 17.3 0.1 0.0054 16.6 0.1 1.3 1 0 0 1 1 1 1 CoA-ligase AAA_11 PF13086.6 gi|145592001|ref|YP_001154003.1| - 0.0033 17.3 0.0 0.0053 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|145592001|ref|YP_001154003.1| - 0.0055 16.7 0.0 0.06 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|145592001|ref|YP_001154003.1| - 0.0058 17.0 0.0 0.01 16.2 0.0 1.5 1 0 0 1 1 1 1 RNA helicase GvpD PF07088.11 gi|145592001|ref|YP_001154003.1| - 0.0059 15.3 0.0 1.1 7.8 0.0 2.3 1 1 1 2 2 2 2 GvpD gas vesicle protein AAA_18 PF13238.6 gi|145592001|ref|YP_001154003.1| - 0.016 15.7 0.0 0.065 13.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|145592001|ref|YP_001154003.1| - 0.033 14.0 0.0 0.078 12.8 0.0 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein CobU PF02283.16 gi|145592001|ref|YP_001154003.1| - 0.064 12.8 0.0 0.15 11.7 0.0 1.7 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase SRP54 PF00448.22 gi|145592001|ref|YP_001154003.1| - 0.07 12.8 0.0 0.33 10.6 0.0 2.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|145592001|ref|YP_001154003.1| - 0.073 13.5 0.1 0.17 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|145592001|ref|YP_001154003.1| - 0.091 12.9 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|145592001|ref|YP_001154003.1| - 0.092 12.2 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain RuvB_N PF05496.12 gi|145592001|ref|YP_001154003.1| - 0.099 12.4 0.1 0.25 11.1 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|145592001|ref|YP_001154003.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145592001|ref|YP_001154003.1| - 0.12 12.3 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|145592001|ref|YP_001154003.1| - 0.15 11.5 0.0 0.3 10.5 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_23 PF13476.6 gi|145592001|ref|YP_001154003.1| - 0.21 12.1 0.0 0.42 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|145592002|ref|YP_001154004.1| - 1.6e-10 40.7 0.0 2.1e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Ferrous iron transport protein B Ras PF00071.22 gi|145592002|ref|YP_001154004.1| - 8.6e-08 31.9 0.0 1.4e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|145592002|ref|YP_001154004.1| - 1.1e-07 31.5 0.0 1.2e-07 31.3 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|145592002|ref|YP_001154004.1| - 1.9e-07 30.9 0.1 8e-07 28.9 0.1 1.9 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.23 gi|145592002|ref|YP_001154004.1| - 7.9e-06 25.9 0.0 9.2e-06 25.7 0.0 1.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.10 gi|145592002|ref|YP_001154004.1| - 0.00012 21.6 0.0 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit RsgA_GTPase PF03193.16 gi|145592002|ref|YP_001154004.1| - 0.00067 19.6 0.3 0.072 13.0 0.2 2.4 2 1 0 2 2 2 1 RsgA GTPase Roc PF08477.13 gi|145592002|ref|YP_001154004.1| - 0.0019 18.4 0.1 0.0072 16.5 0.1 1.9 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase NB-ARC PF00931.22 gi|145592002|ref|YP_001154004.1| - 0.023 13.9 0.5 0.033 13.4 0.5 1.2 1 0 0 1 1 1 0 NB-ARC domain GTP_EFTU PF00009.27 gi|145592002|ref|YP_001154004.1| - 0.032 13.8 0.1 0.24 10.9 0.0 2.1 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain NACHT PF05729.12 gi|145592002|ref|YP_001154004.1| - 0.052 13.5 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ParA PF10609.9 gi|145592002|ref|YP_001154004.1| - 0.054 12.9 0.6 0.46 9.9 0.4 2.0 1 1 1 2 2 2 0 NUBPL iron-transfer P-loop NTPase AAA_14 PF13173.6 gi|145592002|ref|YP_001154004.1| - 0.069 13.2 0.2 0.11 12.5 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145592002|ref|YP_001154004.1| - 0.078 13.4 0.0 0.12 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|145592002|ref|YP_001154004.1| - 0.08 13.1 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|145592002|ref|YP_001154004.1| - 0.08 13.5 0.0 0.26 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|145592002|ref|YP_001154004.1| - 0.092 12.1 0.1 0.13 11.7 0.1 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI CbiA PF01656.23 gi|145592002|ref|YP_001154004.1| - 0.12 12.4 0.2 0.26 11.3 0.1 1.6 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|145592002|ref|YP_001154004.1| - 0.12 12.9 0.0 0.24 11.9 0.0 1.6 2 0 0 2 2 1 0 ABC transporter AAA_24 PF13479.6 gi|145592002|ref|YP_001154004.1| - 0.2 11.3 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain MS_channel PF00924.18 gi|145592003|ref|YP_001154005.1| - 8e-19 68.0 3.8 8e-19 68.0 3.8 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsK_4TM PF13491.6 gi|145592003|ref|YP_001154005.1| - 0.34 10.6 9.4 0.072 12.8 5.7 1.6 1 1 1 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE NERD PF08378.11 gi|145592004|ref|YP_001154006.1| - 0.13 12.8 0.0 0.21 12.1 0.0 1.3 1 0 0 1 1 1 0 Nuclease-related domain Succ_CoA_lig PF13607.6 gi|145592005|ref|YP_001154007.1| - 6.7e-50 168.5 1.3 1.7e-48 163.9 0.3 3.1 4 0 0 4 4 4 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|145592005|ref|YP_001154007.1| - 8e-24 84.4 1.8 5e-23 81.8 0.5 2.7 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|145592005|ref|YP_001154007.1| - 1.1e-10 42.0 0.4 3.8e-10 40.3 0.3 2.0 2 0 0 2 2 2 1 CoA binding domain DUF348 PF03990.14 gi|145592005|ref|YP_001154007.1| - 0.0013 18.5 0.5 0.11 12.2 0.2 3.1 3 0 0 3 3 3 1 G5-linked-Ubiquitin-like domain Peripla_BP_3 PF13377.6 gi|145592005|ref|YP_001154007.1| - 0.014 15.7 0.1 3.8 7.8 0.1 3.1 3 0 0 3 3 3 0 Periplasmic binding protein-like domain NAD_Gly3P_dh_N PF01210.23 gi|145592005|ref|YP_001154007.1| - 0.018 15.0 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_trans_1_4 PF13692.6 gi|145592005|ref|YP_001154007.1| - 0.069 13.6 1.1 7.5 7.0 0.0 3.4 2 2 1 4 4 4 0 Glycosyl transferases group 1 Ligase_CoA PF00549.19 gi|145592005|ref|YP_001154007.1| - 0.077 12.8 0.0 0.23 11.3 0.0 1.8 2 0 0 2 2 2 0 CoA-ligase GFO_IDH_MocA PF01408.22 gi|145592005|ref|YP_001154007.1| - 0.13 13.1 0.0 15 6.4 0.0 2.9 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold DUF166 PF02593.14 gi|145592005|ref|YP_001154007.1| - 0.13 11.8 0.0 12 5.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function ATP-grasp_5 PF13549.6 gi|145592006|ref|YP_001154008.1| - 6.7e-76 254.6 0.4 7.6e-76 254.4 0.4 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|145592006|ref|YP_001154008.1| - 9.1e-05 22.1 0.3 0.00013 21.6 0.3 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|145592006|ref|YP_001154008.1| - 0.003 17.1 0.0 0.0056 16.3 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|145592006|ref|YP_001154008.1| - 0.0071 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|145592006|ref|YP_001154008.1| - 0.025 14.1 0.2 0.03 13.8 0.2 1.2 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|145592006|ref|YP_001154008.1| - 0.028 14.2 0.3 0.049 13.4 0.3 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|145592006|ref|YP_001154008.1| - 0.045 13.3 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain DUF1851 PF08906.11 gi|145592006|ref|YP_001154008.1| - 0.065 13.2 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1851) Aldo_ket_red PF00248.21 gi|145592007|ref|YP_001154009.1| - 3.5e-64 216.8 0.0 2.2e-62 210.9 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Prolactin_RP PF15172.6 gi|145592007|ref|YP_001154009.1| - 0.006 16.2 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Prolactin-releasing peptide Acetyltransf_1 PF00583.25 gi|145592008|ref|YP_001154010.1| - 4.4e-12 46.3 0.1 5.9e-12 45.8 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|145592008|ref|YP_001154010.1| - 4.9e-08 33.3 0.0 7.3e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|145592008|ref|YP_001154010.1| - 1.5e-06 28.1 0.0 2.7e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|145592008|ref|YP_001154010.1| - 2.9e-06 27.2 0.0 3.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|145592008|ref|YP_001154010.1| - 0.00028 21.0 0.1 0.00048 20.2 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|145592008|ref|YP_001154010.1| - 0.0028 18.3 0.0 0.0034 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|145592008|ref|YP_001154010.1| - 0.0075 16.2 0.1 0.021 14.8 0.0 1.7 2 0 0 2 2 2 1 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.6 gi|145592008|ref|YP_001154010.1| - 0.008 16.3 0.1 0.03 14.4 0.1 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Radical_SAM PF04055.21 gi|145592010|ref|YP_001154012.1| - 2e-22 80.4 0.5 7e-22 78.6 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|145592010|ref|YP_001154012.1| - 4.6e-06 26.8 0.0 2e-05 24.7 0.0 2.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|145592010|ref|YP_001154012.1| - 2e-05 24.9 0.0 4.3e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain ComA PF02679.15 gi|145592010|ref|YP_001154012.1| - 0.089 12.2 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) YdaS_antitoxin PF15943.5 gi|145592010|ref|YP_001154012.1| - 0.1 12.5 0.0 0.43 10.5 0.0 2.1 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT BCAS2 PF05700.11 gi|145592010|ref|YP_001154012.1| - 0.1 12.3 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 Breast carcinoma amplified sequence 2 (BCAS2) TrmB PF01978.19 gi|145592011|ref|YP_001154013.1| - 2.7e-19 68.8 0.4 1e-17 63.7 0.0 2.7 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|145592011|ref|YP_001154013.1| - 1.1e-06 28.1 0.1 2.2e-06 27.1 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145592011|ref|YP_001154013.1| - 2e-06 27.5 0.0 6.6e-06 25.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|145592011|ref|YP_001154013.1| - 2.7e-06 27.3 0.1 5.1e-06 26.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|145592011|ref|YP_001154013.1| - 0.00042 20.1 0.1 0.00084 19.1 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|145592011|ref|YP_001154013.1| - 0.0031 18.0 0.0 0.0068 16.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|145592011|ref|YP_001154013.1| - 0.0057 16.5 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|145592011|ref|YP_001154013.1| - 0.0059 16.6 0.0 0.013 15.5 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|145592011|ref|YP_001154013.1| - 0.018 15.4 0.0 0.042 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator Regulator_TrmB PF11495.8 gi|145592011|ref|YP_001154013.1| - 0.028 13.6 0.3 0.23 10.6 0.1 2.0 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|145592011|ref|YP_001154013.1| - 0.029 14.4 0.0 0.064 13.2 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|145592011|ref|YP_001154013.1| - 0.037 13.8 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_34 PF13601.6 gi|145592011|ref|YP_001154013.1| - 0.074 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.6 gi|145592011|ref|YP_001154013.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain SMC_N PF02463.19 gi|145592012|ref|YP_001154014.1| - 1.7e-19 70.2 0.0 8.6e-19 67.8 0.0 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|145592012|ref|YP_001154014.1| - 1.4e-15 58.4 0.0 1.4e-15 58.4 0.0 4.7 2 2 2 4 4 3 1 AAA domain AAA_15 PF13175.6 gi|145592012|ref|YP_001154014.1| - 2.2e-10 40.8 2.9 1.9e-05 24.6 0.3 3.0 2 1 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|145592012|ref|YP_001154014.1| - 9.8e-09 35.4 0.2 3.1e-06 27.2 0.1 3.1 3 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_27 PF13514.6 gi|145592012|ref|YP_001154014.1| - 2.6e-05 23.9 0.0 2.6e-05 23.9 0.0 5.0 5 1 0 5 5 5 1 AAA domain AAA_29 PF13555.6 gi|145592012|ref|YP_001154014.1| - 8.5e-05 22.2 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain GAS PF13851.6 gi|145592012|ref|YP_001154014.1| - 0.00062 19.2 7.9 0.00062 19.2 7.9 5.2 3 2 2 5 5 5 3 Growth-arrest specific micro-tubule binding ABC_tran PF00005.27 gi|145592012|ref|YP_001154014.1| - 0.0034 17.9 1.4 8.1 7.0 0.0 4.2 2 1 0 2 2 2 0 ABC transporter KASH_CCD PF14662.6 gi|145592012|ref|YP_001154014.1| - 0.0037 17.1 14.2 0.0037 17.1 14.2 4.7 3 1 1 4 4 4 1 Coiled-coil region of CCDC155 or KASH Mod_r PF07200.13 gi|145592012|ref|YP_001154014.1| - 0.016 15.3 47.2 0.038 14.1 3.8 4.9 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Baculo_PEP_C PF04513.12 gi|145592012|ref|YP_001154014.1| - 0.038 14.0 6.6 0.85 9.7 0.2 4.6 3 2 1 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|145592012|ref|YP_001154014.1| - 0.04 14.2 14.3 12 6.2 0.3 6.4 3 2 1 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|145592012|ref|YP_001154014.1| - 0.094 12.8 23.1 0.057 13.5 1.5 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DNA_ligase_ZBD PF03119.16 gi|145592012|ref|YP_001154014.1| - 0.1 12.7 0.6 0.39 10.8 0.6 2.1 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DASH_Dam1 PF08653.10 gi|145592012|ref|YP_001154014.1| - 0.1 12.4 1.9 39 4.1 0.0 5.0 5 0 0 5 5 5 0 DASH complex subunit Dam1 BLOC1_2 PF10046.9 gi|145592012|ref|YP_001154014.1| - 0.12 12.7 36.4 0.63 10.4 3.5 6.9 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 zf-ribbon_3 PF13248.6 gi|145592012|ref|YP_001154014.1| - 0.21 11.1 0.1 0.35 10.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain FlaC_arch PF05377.11 gi|145592012|ref|YP_001154014.1| - 0.36 11.2 0.1 0.36 11.2 0.1 7.9 7 2 3 10 10 9 0 Flagella accessory protein C (FlaC) Cauli_AT PF03233.13 gi|145592012|ref|YP_001154014.1| - 0.6 10.0 20.9 2.9 7.8 2.5 4.4 3 1 2 5 5 5 0 Aphid transmission protein NdhM PF10664.9 gi|145592012|ref|YP_001154014.1| - 0.9 9.8 3.8 1.4 9.2 0.3 3.1 2 1 0 3 3 2 0 Cyanobacterial and plastid NDH-1 subunit M HhH-GPD PF00730.25 gi|145592012|ref|YP_001154014.1| - 1.1 9.7 5.1 54 4.3 0.0 3.9 3 1 0 3 3 3 0 HhH-GPD superfamily base excision DNA repair protein SKA2 PF16740.5 gi|145592012|ref|YP_001154014.1| - 1.9 8.3 34.8 0.029 14.1 6.7 5.7 4 3 2 6 6 6 0 Spindle and kinetochore-associated protein 2 Fib_alpha PF08702.10 gi|145592012|ref|YP_001154014.1| - 2.8 8.1 29.5 4.1 7.6 0.9 4.8 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Syntaxin_2 PF14523.6 gi|145592012|ref|YP_001154014.1| - 4 7.9 21.9 1.4 9.3 0.4 5.2 3 1 1 4 4 4 0 Syntaxin-like protein FliD_C PF07195.12 gi|145592012|ref|YP_001154014.1| - 4.3 6.7 14.0 7.9 5.8 5.5 3.9 2 2 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus TarH PF02203.15 gi|145592012|ref|YP_001154014.1| - 4.7 7.1 13.8 8.2 6.3 8.4 3.6 2 1 1 3 3 3 0 Tar ligand binding domain homologue LOH1CR12 PF10158.9 gi|145592012|ref|YP_001154014.1| - 4.7 7.2 11.2 3.7 7.6 1.0 4.4 3 2 1 4 4 4 0 Tumour suppressor protein APG17 PF04108.12 gi|145592012|ref|YP_001154014.1| - 5 6.1 36.6 0.87 8.6 5.8 4.6 3 1 0 3 3 3 0 Autophagy protein Apg17 TssO PF17561.2 gi|145592012|ref|YP_001154014.1| - 6.7 6.8 10.8 74 3.4 0.0 4.2 3 2 0 3 3 3 0 Type VI secretion system, TssO SNAP PF14938.6 gi|145592013|ref|YP_001154015.1| - 0.098 12.1 0.0 0.1 12.0 0.0 1.0 1 0 0 1 1 1 0 Soluble NSF attachment protein, SNAP Actin PF00022.19 gi|145592015|ref|YP_001154017.1| - 6.2e-09 34.9 0.1 7.9e-08 31.3 0.1 2.0 1 1 0 1 1 1 1 Actin Arcadin_1 PF18653.1 gi|145592016|ref|YP_001154018.1| - 2.3e-39 133.9 0.2 2.5e-39 133.8 0.2 1.0 1 0 0 1 1 1 1 Arcadin 1 Nitroreductase PF00881.24 gi|145592017|ref|YP_001154019.1| - 7e-24 84.8 2.5 3.5e-23 82.5 2.5 1.9 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|145592017|ref|YP_001154019.1| - 3.8e-08 33.2 0.0 0.0026 17.3 0.0 2.2 2 0 0 2 2 2 2 Putative TM nitroreductase zinc_ribbon_4 PF13717.6 gi|145592018|ref|YP_001154020.1| - 4.9e-05 23.2 1.2 0.16 11.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|145592018|ref|YP_001154020.1| - 0.0001 22.1 4.1 0.0061 16.4 0.8 2.2 2 0 0 2 2 2 1 zinc-finger of a C2HC-type ADK_lid PF05191.14 gi|145592018|ref|YP_001154020.1| - 0.00043 20.2 1.1 0.13 12.2 0.1 2.2 2 0 0 2 2 2 1 Adenylate kinase, active site lid Cys_rich_CPXG PF14255.6 gi|145592018|ref|YP_001154020.1| - 0.0006 19.7 1.9 0.049 13.5 0.2 2.2 2 0 0 2 2 2 1 Cysteine-rich CPXCG CpXC PF14353.6 gi|145592018|ref|YP_001154020.1| - 0.00064 19.8 1.7 0.31 11.1 0.1 2.1 1 1 1 2 2 2 2 CpXC protein Rad50_zn_hook PF04423.14 gi|145592018|ref|YP_001154020.1| - 0.00068 19.4 0.8 0.9 9.4 0.1 2.2 2 0 0 2 2 2 2 Rad50 zinc hook motif zf_UBZ PF18439.1 gi|145592018|ref|YP_001154020.1| - 0.00088 18.8 0.7 0.063 12.9 0.1 2.3 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|145592018|ref|YP_001154020.1| - 0.00099 18.4 1.5 1 8.9 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|145592018|ref|YP_001154020.1| - 0.0022 18.4 1.2 1.6 9.3 0.1 2.2 2 0 0 2 2 2 2 Zinc-finger double domain Trm112p PF03966.16 gi|145592018|ref|YP_001154020.1| - 0.0035 17.9 2.2 0.06 13.9 2.2 2.2 1 1 0 1 1 1 1 Trm112p-like protein TF_Zn_Ribbon PF08271.12 gi|145592018|ref|YP_001154020.1| - 0.0037 16.7 2.2 0.65 9.6 0.1 2.2 2 0 0 2 2 2 2 TFIIB zinc-binding zf-Di19 PF05605.12 gi|145592018|ref|YP_001154020.1| - 0.0049 17.1 3.0 0.1 12.9 0.2 2.1 2 0 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding DZR PF12773.7 gi|145592018|ref|YP_001154020.1| - 0.0057 16.6 0.2 0.0095 15.9 0.2 1.4 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|145592018|ref|YP_001154020.1| - 0.0068 16.4 0.0 0.0077 16.2 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RING_7 PF02591.15 gi|145592018|ref|YP_001154020.1| - 0.0092 16.1 0.6 2.8 8.2 0.1 2.2 2 0 0 2 2 2 1 C4-type zinc ribbon domain T4_baseplate PF12322.8 gi|145592018|ref|YP_001154020.1| - 0.012 15.1 0.2 1.7 8.0 0.0 2.0 1 1 1 2 2 2 0 T4 bacteriophage base plate protein IBR PF01485.21 gi|145592018|ref|YP_001154020.1| - 0.015 15.5 1.7 0.096 12.9 1.7 1.9 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain FYDLN_acid PF09538.10 gi|145592018|ref|YP_001154020.1| - 0.015 16.0 0.9 2.3 8.9 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-IS66 PF13005.7 gi|145592018|ref|YP_001154020.1| - 0.016 15.6 0.1 2.8 8.4 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-RING_2 PF13639.6 gi|145592018|ref|YP_001154020.1| - 0.017 15.4 1.3 0.028 14.7 1.3 1.4 1 1 0 1 1 1 0 Ring finger domain UPF0547 PF10571.9 gi|145592018|ref|YP_001154020.1| - 0.018 15.2 1.1 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.6 gi|145592018|ref|YP_001154020.1| - 0.018 15.7 0.3 4.2 8.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.8 gi|145592018|ref|YP_001154020.1| - 0.018 14.9 1.6 4.3 7.3 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-AN1 PF01428.16 gi|145592018|ref|YP_001154020.1| - 0.018 15.2 2.3 4.3 7.6 0.2 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zinc_ribbon_5 PF13719.6 gi|145592018|ref|YP_001154020.1| - 0.019 14.7 0.8 4.8 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|145592018|ref|YP_001154020.1| - 0.023 14.8 0.1 0.033 14.2 0.1 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zf-C2H2 PF00096.26 gi|145592018|ref|YP_001154020.1| - 0.023 15.1 6.0 0.36 11.4 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-CHCC PF10276.9 gi|145592018|ref|YP_001154020.1| - 0.024 14.7 1.1 2.6 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger domain TackOD1 PF18551.1 gi|145592018|ref|YP_001154020.1| - 0.036 13.7 0.1 0.044 13.4 0.1 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-C2H2_4 PF13894.6 gi|145592018|ref|YP_001154020.1| - 0.052 14.4 3.3 2.6 9.1 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|145592018|ref|YP_001154020.1| - 0.056 13.6 2.1 0.16 12.1 2.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|145592018|ref|YP_001154020.1| - 0.058 13.7 5.1 2 8.7 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon Anti-TRAP PF15777.5 gi|145592018|ref|YP_001154020.1| - 0.059 13.3 0.1 0.086 12.8 0.1 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein YacG PF03884.14 gi|145592018|ref|YP_001154020.1| - 0.077 12.7 0.8 7.5 6.4 0.1 2.2 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG Sgf11 PF08209.11 gi|145592018|ref|YP_001154020.1| - 0.081 12.5 1.5 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.6 gi|145592018|ref|YP_001154020.1| - 0.082 12.6 4.0 1.2 8.9 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|145592018|ref|YP_001154020.1| - 0.089 11.6 0.2 0.096 11.4 0.2 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-C2H2_12 PF18112.1 gi|145592018|ref|YP_001154020.1| - 0.099 13.1 3.2 9 6.9 0.1 2.3 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain Cys_rich_KTR PF14205.6 gi|145592018|ref|YP_001154020.1| - 0.11 12.4 0.7 0.23 11.3 0.7 1.5 1 1 0 1 1 1 0 Cysteine-rich KTR zf-DNL PF05180.12 gi|145592018|ref|YP_001154020.1| - 0.11 12.4 0.3 0.14 12.1 0.3 1.2 1 0 0 1 1 1 0 DNL zinc finger A2L_zn_ribbon PF08792.10 gi|145592018|ref|YP_001154020.1| - 0.13 12.0 1.2 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2256 PF10013.9 gi|145592018|ref|YP_001154020.1| - 0.13 12.4 1.9 8.2 6.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF983 PF06170.12 gi|145592018|ref|YP_001154020.1| - 0.14 12.6 0.2 4.9 7.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Zn_Tnp_IS1595 PF12760.7 gi|145592018|ref|YP_001154020.1| - 0.19 11.7 5.4 38 4.4 5.4 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|145592018|ref|YP_001154020.1| - 0.3 11.0 2.7 12 5.9 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2_6 PF13912.6 gi|145592018|ref|YP_001154020.1| - 0.77 9.8 4.2 5.5 7.1 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf_C2H2_10 PF18414.1 gi|145592018|ref|YP_001154020.1| - 1.4 8.5 4.3 1.2 8.7 0.3 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger HSP20 PF00011.21 gi|145592019|ref|YP_001154021.1| - 1.3e-09 38.1 0.0 1.6e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|145592019|ref|YP_001154021.1| - 8.3e-08 31.7 0.1 1.7e-07 30.6 0.0 1.6 1 1 0 1 1 1 1 HSP20-like domain found in ArsA tRNA_int_endo PF01974.17 gi|145592020|ref|YP_001154022.1| - 1.5e-25 89.0 0.8 2.3e-25 88.5 0.0 1.7 2 0 0 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|145592020|ref|YP_001154022.1| - 5.6e-20 70.8 0.7 8e-20 70.3 0.7 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|145592020|ref|YP_001154022.1| - 0.00075 19.6 0.1 0.0017 18.5 0.1 1.7 1 0 0 1 1 1 1 tRNA-splicing endonuclease subunit sen54 N-term Molydop_binding PF01568.21 gi|145592021|ref|YP_001154023.1| - 0.049 13.7 0.1 0.55 10.3 0.0 2.1 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain HGTP_anticodon PF03129.20 gi|145592022|ref|YP_001154024.1| - 5e-19 68.3 0.0 1.2e-18 67.0 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|145592022|ref|YP_001154024.1| - 2.7e-06 27.5 0.0 4.5e-05 23.5 0.0 2.3 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) zinc_ribbon_2 PF13240.6 gi|145592022|ref|YP_001154024.1| - 0.17 11.6 2.1 13 5.7 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|145592022|ref|YP_001154024.1| - 0.49 10.4 2.2 2.4 8.1 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type ADK_lid PF05191.14 gi|145592022|ref|YP_001154024.1| - 0.96 9.5 2.9 7.5 6.6 1.6 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|145592022|ref|YP_001154024.1| - 1.4 9.1 3.7 5.7 7.1 0.0 2.7 3 0 0 3 3 3 0 Zinc ribbon domain Cation_efflux PF01545.21 gi|145592023|ref|YP_001154025.1| - 3.5e-18 66.1 14.9 4.6e-18 65.7 14.9 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|145592023|ref|YP_001154025.1| - 8.3e-05 22.6 0.4 0.00014 21.9 0.4 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter Arginase PF00491.21 gi|145592024|ref|YP_001154026.1| - 4.1e-57 193.8 0.0 4.9e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Arginase family CTP_transf_like PF01467.26 gi|145592025|ref|YP_001154027.1| - 1.3e-09 38.4 0.0 3.3e-09 37.1 0.0 1.6 2 0 0 2 2 2 1 Cytidylyltransferase-like HIGH_NTase1 PF05636.11 gi|145592025|ref|YP_001154027.1| - 0.077 12.2 0.0 0.53 9.4 0.0 1.9 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase DNA_RNApol_7kD PF03604.13 gi|145592026|ref|YP_001154028.1| - 1.7e-06 27.6 3.8 4.3e-06 26.3 3.8 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2 PF00096.26 gi|145592026|ref|YP_001154028.1| - 0.00087 19.6 1.8 0.079 13.5 0.2 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|145592026|ref|YP_001154028.1| - 0.002 18.8 1.1 0.6 11.1 0.1 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger zf_UBZ PF18439.1 gi|145592026|ref|YP_001154028.1| - 0.004 16.7 1.3 0.11 12.2 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|145592026|ref|YP_001154028.1| - 0.0042 17.2 0.2 0.0057 16.7 0.2 1.3 1 0 0 1 1 1 1 Zinc ribbon domain DUF2072 PF09845.9 gi|145592026|ref|YP_001154028.1| - 0.0078 16.5 0.2 0.009 16.3 0.2 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn_ribbon_SprT PF17283.2 gi|145592026|ref|YP_001154028.1| - 0.013 15.4 2.1 0.15 11.9 2.1 2.0 1 1 0 1 1 1 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|145592026|ref|YP_001154028.1| - 0.021 14.8 0.1 0.029 14.4 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|145592026|ref|YP_001154028.1| - 0.029 14.4 0.1 0.029 14.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-BED PF02892.15 gi|145592026|ref|YP_001154028.1| - 0.041 13.9 3.4 1.3 9.1 0.2 2.1 1 1 1 2 2 2 0 BED zinc finger Zn_Tnp_IS1595 PF12760.7 gi|145592026|ref|YP_001154028.1| - 0.044 13.8 1.2 6.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-CSL PF05207.13 gi|145592026|ref|YP_001154028.1| - 0.086 12.6 0.9 0.11 12.2 0.9 1.3 1 1 0 1 1 1 0 CSL zinc finger PknG_rubred PF16919.5 gi|145592026|ref|YP_001154028.1| - 0.11 12.7 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein kinase G rubredoxin domain zf_C2H2_6 PF18450.1 gi|145592026|ref|YP_001154028.1| - 0.29 10.9 2.8 0.65 9.8 0.1 2.4 2 1 0 2 2 2 0 Zinc Finger domain zf-C2HC_2 PF13913.6 gi|145592026|ref|YP_001154028.1| - 1 9.4 6.7 2.7 8.0 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type PGP_phosphatase PF09419.10 gi|145592027|ref|YP_001154029.1| - 0.1 12.2 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase Fe-ADH_2 PF13685.6 gi|145592028|ref|YP_001154030.1| - 1.2e-57 195.5 1.0 2.6e-57 194.4 1.0 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|145592028|ref|YP_001154030.1| - 9.2e-26 90.5 4.6 7.6e-24 84.2 4.6 2.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|145592028|ref|YP_001154030.1| - 3.3e-07 29.7 1.0 1.3e-05 24.5 1.0 2.7 1 1 0 1 1 1 1 3-dehydroquinate synthase PUL PF08324.11 gi|145592028|ref|YP_001154030.1| - 0.0037 16.6 0.0 0.0061 15.8 0.0 1.4 1 0 0 1 1 1 1 PUL domain MerC PF03203.14 gi|145592028|ref|YP_001154030.1| - 0.042 14.3 0.2 0.091 13.2 0.2 1.6 1 0 0 1 1 1 0 MerC mercury resistance protein MadM PF03818.13 gi|145592028|ref|YP_001154030.1| - 9.7 6.2 6.3 0.56 10.1 0.3 2.1 3 0 0 3 3 3 0 Malonate/sodium symporter MadM subunit DJ-1_PfpI PF01965.24 gi|145592029|ref|YP_001154031.1| - 3e-14 53.2 0.1 4.8e-13 49.2 0.1 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family AAA_17 PF13207.6 gi|145592030|ref|YP_001154032.1| - 4.4e-30 104.9 0.0 5.5e-30 104.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|145592030|ref|YP_001154032.1| - 2.5e-05 24.1 0.8 0.025 14.3 0.1 2.5 1 1 2 3 3 3 2 Thymidylate kinase AAA_18 PF13238.6 gi|145592030|ref|YP_001154032.1| - 0.0014 19.1 0.1 0.0031 18.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|145592030|ref|YP_001154032.1| - 0.031 14.5 0.0 0.075 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|145592030|ref|YP_001154032.1| - 0.046 13.0 0.0 0.095 12.0 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin AAA_30 PF13604.6 gi|145592030|ref|YP_001154032.1| - 0.048 13.4 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|145592030|ref|YP_001154032.1| - 0.051 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 Ferrous iron transport protein B AAA_33 PF13671.6 gi|145592030|ref|YP_001154032.1| - 0.059 13.5 0.0 0.23 11.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145592030|ref|YP_001154032.1| - 0.072 13.5 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|145592030|ref|YP_001154032.1| - 0.072 13.4 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|145592030|ref|YP_001154032.1| - 0.1 12.5 0.1 8.4 6.2 0.0 2.3 2 1 0 2 2 2 0 Deoxynucleoside kinase AAA_19 PF13245.6 gi|145592030|ref|YP_001154032.1| - 0.13 12.5 0.1 0.36 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain cobW PF02492.19 gi|145592030|ref|YP_001154032.1| - 0.17 11.5 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain OMPdecase PF00215.24 gi|145592031|ref|YP_001154033.1| - 3.2e-19 69.4 0.4 4.2e-19 69.0 0.4 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Ribul_P_3_epim PF00834.19 gi|145592031|ref|YP_001154033.1| - 0.0078 15.6 0.3 0.012 15.0 0.3 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family HMGL-like PF00682.19 gi|145592031|ref|YP_001154033.1| - 0.11 12.1 0.1 0.4 10.2 0.1 2.1 1 1 0 1 1 1 0 HMGL-like Archease PF01951.16 gi|145592032|ref|YP_001154034.1| - 2.5e-39 134.7 0.3 2.8e-39 134.5 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) EarP PF10093.9 gi|145592032|ref|YP_001154034.1| - 0.087 11.9 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 Elongation-Factor P (EF-P) rhamnosyltransferase EarP ANTAR PF03861.14 gi|145592032|ref|YP_001154034.1| - 0.18 11.6 0.0 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 ANTAR domain tRNA_edit PF04073.15 gi|145592033|ref|YP_001154035.1| - 1.6e-23 83.1 0.0 2.9e-23 82.3 0.0 1.4 1 1 0 1 1 1 1 Aminoacyl-tRNA editing domain HTH_29 PF13551.6 gi|145592033|ref|YP_001154035.1| - 0.028 14.4 0.0 0.045 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix RNA_POL_M_15KD PF02150.16 gi|145592035|ref|YP_001154037.1| - 0.00043 20.1 0.5 0.00067 19.5 0.5 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.6 gi|145592035|ref|YP_001154037.1| - 0.024 15.0 0.3 0.032 14.6 0.3 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|145592035|ref|YP_001154037.1| - 0.076 12.5 0.7 0.12 11.9 0.7 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding PRA-PH PF01503.17 gi|145592036|ref|YP_001154038.1| - 0.031 14.7 1.1 0.076 13.5 1.1 1.7 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase tRNA_synthFbeta PF17759.1 gi|145592037|ref|YP_001154039.1| - 9.7e-22 77.5 0.0 1.5e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|145592037|ref|YP_001154039.1| - 1.9e-11 44.1 0.5 1.4e-07 31.7 0.0 3.4 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|145592037|ref|YP_001154039.1| - 4.6e-09 36.2 0.0 7.7e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Gmad2 PF10648.9 gi|145592039|ref|YP_001154041.1| - 0.014 15.6 0.0 8.3 6.7 0.0 2.2 1 1 1 2 2 2 0 Immunoglobulin-like domain of bacterial spore germination RE_TdeIII PF09520.10 gi|145592039|ref|YP_001154041.1| - 0.077 12.7 0.0 0.18 11.5 0.0 1.5 2 0 0 2 2 2 0 Type II restriction endonuclease, TdeIII PA14 PF07691.12 gi|145592039|ref|YP_001154041.1| - 0.096 12.5 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 PA14 domain Tn7_Tnp_TnsA_N PF08722.11 gi|145592039|ref|YP_001154041.1| - 0.097 12.9 0.1 0.19 11.9 0.1 1.6 1 0 0 1 1 1 0 TnsA endonuclease N terminal DNA_methylase PF00145.17 gi|145592040|ref|YP_001154042.1| - 7e-59 199.8 0.0 5.4e-56 190.4 0.0 2.2 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|145592040|ref|YP_001154042.1| - 0.058 13.0 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase NMD3 PF04981.13 gi|145592041|ref|YP_001154043.1| - 2.9e-43 148.1 0.3 3.5e-43 147.8 0.3 1.1 1 0 0 1 1 1 1 NMD3 family zf-RING_7 PF02591.15 gi|145592041|ref|YP_001154043.1| - 0.0062 16.7 1.2 0.26 11.5 0.7 2.7 2 0 0 2 2 2 1 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145592041|ref|YP_001154043.1| - 0.0063 16.6 0.8 4.1 7.6 0.1 2.7 3 0 0 3 3 3 2 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145592041|ref|YP_001154043.1| - 0.0079 15.6 1.2 0.96 9.0 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|145592041|ref|YP_001154043.1| - 0.053 14.3 2.5 0.19 12.5 2.5 2.0 1 1 0 1 1 1 0 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|145592041|ref|YP_001154043.1| - 0.071 12.9 3.1 0.98 9.2 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|145592041|ref|YP_001154043.1| - 0.099 12.7 3.4 2.4 8.3 2.5 2.5 2 1 0 2 2 2 0 Double zinc ribbon zf-BED PF02892.15 gi|145592041|ref|YP_001154043.1| - 0.11 12.5 0.0 0.11 12.5 0.0 3.3 4 0 0 4 4 3 0 BED zinc finger zf-ACC PF17848.1 gi|145592041|ref|YP_001154043.1| - 0.17 12.0 3.3 20 5.4 0.1 3.4 3 0 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain PyrI_C PF02748.15 gi|145592041|ref|YP_001154043.1| - 0.61 10.0 4.2 0.28 11.1 0.9 2.2 2 0 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain NOB1_Zn_bind PF08772.11 gi|145592041|ref|YP_001154043.1| - 0.66 10.2 3.0 11 6.3 0.1 2.7 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-CHCC PF10276.9 gi|145592041|ref|YP_001154043.1| - 0.68 10.0 3.6 1.1 9.3 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger domain zf-C2HC_2 PF13913.6 gi|145592041|ref|YP_001154043.1| - 4.6 7.3 6.0 7.8 6.5 0.5 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-C2H2_4 PF13894.6 gi|145592041|ref|YP_001154043.1| - 5.1 8.2 8.1 23 6.2 0.1 4.0 5 0 0 5 5 4 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.7 gi|145592041|ref|YP_001154043.1| - 5.7 7.0 6.6 2.4e+02 1.8 6.6 2.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain C1_1 PF00130.22 gi|145592041|ref|YP_001154043.1| - 6.6 6.7 6.4 95 3.0 4.2 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Acetyltransf_1 PF00583.25 gi|145592042|ref|YP_001154044.1| - 1.1e-17 64.4 0.0 1.2e-17 64.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|145592042|ref|YP_001154044.1| - 3.9e-15 55.9 0.0 4.9e-15 55.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|145592042|ref|YP_001154044.1| - 6.7e-14 52.1 0.0 9.9e-14 51.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|145592042|ref|YP_001154044.1| - 9.1e-10 38.4 0.0 2e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|145592042|ref|YP_001154044.1| - 2.1e-08 34.5 0.0 2.6e-08 34.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|145592042|ref|YP_001154044.1| - 1.7e-07 31.4 0.0 8.5e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|145592042|ref|YP_001154044.1| - 0.0002 21.4 0.0 0.00033 20.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_15 PF17013.5 gi|145592042|ref|YP_001154044.1| - 0.001 18.6 0.3 0.011 15.3 0.4 2.0 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_3 PF13302.7 gi|145592042|ref|YP_001154044.1| - 0.0013 19.4 0.0 0.0016 19.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|145592042|ref|YP_001154044.1| - 0.085 12.4 0.0 0.17 11.5 0.0 1.4 2 0 0 2 2 2 0 GNAT acetyltransferase Acetyltransf_8 PF13523.6 gi|145592042|ref|YP_001154044.1| - 0.21 11.3 0.0 0.3 10.7 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Iso_dh PF00180.20 gi|145592043|ref|YP_001154045.1| - 8.8e-97 324.4 0.0 1.1e-96 324.1 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase ECH_1 PF00378.20 gi|145592044|ref|YP_001154046.1| - 3.5e-12 46.2 0.0 5.8e-12 45.5 0.0 1.3 1 1 0 1 1 1 1 Enoyl-CoA hydratase/isomerase TGS PF02824.21 gi|145592045|ref|YP_001154047.1| - 2e-16 59.8 0.0 4e-16 58.8 0.0 1.6 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|145592045|ref|YP_001154047.1| - 5.4e-11 42.5 0.1 1.2e-10 41.3 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|145592045|ref|YP_001154047.1| - 3.4e-09 36.8 0.0 8.8e-09 35.5 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|145592045|ref|YP_001154047.1| - 1.3e-05 24.8 0.1 2.7e-05 23.7 0.1 1.5 1 0 0 1 1 1 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|145592045|ref|YP_001154047.1| - 0.0069 16.6 0.4 0.48 10.7 0.2 2.8 2 1 0 2 2 2 1 Protein of unknown function (DUF933) AAA_22 PF13401.6 gi|145592045|ref|YP_001154047.1| - 0.016 15.5 0.0 0.15 12.4 0.0 2.7 2 1 0 3 3 3 0 AAA domain PduV-EutP PF10662.9 gi|145592045|ref|YP_001154047.1| - 0.029 14.1 0.0 11 5.8 0.0 2.9 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|145592045|ref|YP_001154047.1| - 0.031 14.6 0.0 0.092 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain LpxI_N PF17930.1 gi|145592045|ref|YP_001154047.1| - 0.067 13.1 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 LpxI N-terminal domain ACT_4 PF13291.6 gi|145592045|ref|YP_001154047.1| - 0.07 13.7 0.0 10 6.8 0.0 2.6 2 0 0 2 2 2 0 ACT domain cobW PF02492.19 gi|145592045|ref|YP_001154047.1| - 0.13 11.9 0.3 20 4.7 0.0 2.7 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CDC37_C PF08564.10 gi|145592046|ref|YP_001154048.1| - 0.12 12.5 0.2 0.35 11.0 0.1 1.8 2 0 0 2 2 2 0 Cdc37 C terminal domain PIN PF01850.21 gi|145592046|ref|YP_001154048.1| - 0.19 12.2 3.2 0.26 11.8 0.7 2.0 1 1 1 2 2 2 0 PIN domain AAA PF00004.29 gi|145592047|ref|YP_001154049.1| - 2.7e-15 57.0 0.0 6.8e-15 55.7 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|145592047|ref|YP_001154049.1| - 1.3e-14 54.3 0.0 1.1e-10 41.5 0.2 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|145592047|ref|YP_001154049.1| - 2.8e-11 43.7 0.0 7.5e-11 42.3 0.0 1.8 1 0 0 1 1 1 1 Replication factor C C-terminal domain RuvB_N PF05496.12 gi|145592047|ref|YP_001154049.1| - 1.3e-08 34.7 0.0 3.3e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|145592047|ref|YP_001154049.1| - 1.3e-07 31.8 0.5 3.4e-07 30.5 0.1 1.9 2 0 0 2 2 1 1 AAA C-terminal domain AAA_16 PF13191.6 gi|145592047|ref|YP_001154049.1| - 1.5e-07 31.9 0.0 0.0005 20.5 0.0 2.5 1 1 1 2 2 2 2 AAA ATPase domain AAA_14 PF13173.6 gi|145592047|ref|YP_001154049.1| - 7.8e-07 29.2 0.0 3.2e-06 27.2 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|145592047|ref|YP_001154049.1| - 2.8e-06 27.6 0.6 0.078 13.2 0.0 2.7 2 1 1 3 3 2 2 AAA domain AAA_3 PF07726.11 gi|145592047|ref|YP_001154049.1| - 9.9e-06 25.4 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|145592047|ref|YP_001154049.1| - 4.3e-05 23.5 0.0 0.0002 21.4 0.0 1.9 1 1 1 2 2 2 1 Rad17 P-loop domain AAA_18 PF13238.6 gi|145592047|ref|YP_001154049.1| - 7.2e-05 23.3 0.0 0.00065 20.3 0.0 2.4 2 2 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|145592047|ref|YP_001154049.1| - 0.00012 22.1 0.1 0.00051 20.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|145592047|ref|YP_001154049.1| - 0.00015 21.6 0.0 0.00043 20.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|145592047|ref|YP_001154049.1| - 0.00018 21.2 0.0 0.00034 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|145592047|ref|YP_001154049.1| - 0.00019 21.5 0.0 0.0036 17.3 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Mg_chelatase PF01078.21 gi|145592047|ref|YP_001154049.1| - 0.00034 20.1 0.0 0.0062 15.9 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|145592047|ref|YP_001154049.1| - 0.00041 19.9 0.0 0.41 10.1 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein DNA_pol3_delta PF06144.13 gi|145592047|ref|YP_001154049.1| - 0.00063 19.6 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_30 PF13604.6 gi|145592047|ref|YP_001154049.1| - 0.0019 18.0 0.1 0.0065 16.2 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|145592047|ref|YP_001154049.1| - 0.002 18.3 0.0 0.0039 17.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|145592047|ref|YP_001154049.1| - 0.0027 17.5 0.0 0.0058 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain DEAD PF00270.29 gi|145592047|ref|YP_001154049.1| - 0.0029 17.4 0.3 0.076 12.8 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase RNA_helicase PF00910.22 gi|145592047|ref|YP_001154049.1| - 0.0034 17.7 0.0 0.0091 16.4 0.0 1.7 2 0 0 2 2 1 1 RNA helicase IstB_IS21 PF01695.17 gi|145592047|ref|YP_001154049.1| - 0.0084 15.9 0.0 0.023 14.4 0.0 1.7 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|145592047|ref|YP_001154049.1| - 0.0099 15.4 0.0 0.019 14.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_19 PF13245.6 gi|145592047|ref|YP_001154049.1| - 0.018 15.4 0.2 0.24 11.7 0.0 2.3 2 1 1 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|145592047|ref|YP_001154049.1| - 0.023 15.0 0.0 0.054 13.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|145592047|ref|YP_001154049.1| - 0.024 14.1 0.1 0.8 9.1 0.0 2.3 1 1 0 2 2 2 0 Bacterial TniB protein TIP49 PF06068.13 gi|145592047|ref|YP_001154049.1| - 0.027 13.7 0.0 0.048 12.9 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain T2SSE PF00437.20 gi|145592047|ref|YP_001154049.1| - 0.028 13.5 0.0 0.45 9.5 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein Phycobilisome PF00502.19 gi|145592047|ref|YP_001154049.1| - 0.031 14.2 0.2 3 7.7 0.1 2.7 3 0 0 3 3 3 0 Phycobilisome protein DUF2075 PF09848.9 gi|145592047|ref|YP_001154049.1| - 0.051 12.8 0.0 0.82 8.8 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.18 gi|145592047|ref|YP_001154049.1| - 0.057 13.1 0.0 0.086 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF815 PF05673.13 gi|145592047|ref|YP_001154049.1| - 0.068 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|145592047|ref|YP_001154049.1| - 0.076 13.1 0.0 0.31 11.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|145592047|ref|YP_001154049.1| - 0.15 12.0 0.0 5.5 6.9 0.0 2.3 1 1 1 2 2 2 0 NACHT domain Parvo_NS1 PF01057.17 gi|145592047|ref|YP_001154049.1| - 0.15 11.2 0.0 0.37 9.9 0.0 1.6 2 0 0 2 2 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|145592047|ref|YP_001154049.1| - 0.19 12.3 0.0 0.6 10.6 0.0 1.9 1 1 0 1 1 1 0 ABC transporter RNA_POL_M_15KD PF02150.16 gi|145592048|ref|YP_001154050.1| - 1.3e-06 28.1 0.2 2.4e-06 27.3 0.2 1.5 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-TFIIB PF13453.6 gi|145592048|ref|YP_001154050.1| - 0.00041 19.6 1.9 0.00088 18.6 0.3 2.1 2 0 0 2 2 2 1 Transcription factor zinc-finger zf-NADH-PPase PF09297.11 gi|145592048|ref|YP_001154050.1| - 0.0023 17.6 0.2 0.021 14.5 0.2 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|145592048|ref|YP_001154050.1| - 0.0023 17.9 0.1 0.0034 17.4 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.7 gi|145592048|ref|YP_001154050.1| - 0.0052 17.2 0.1 1.3 9.5 0.1 2.5 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 FYDLN_acid PF09538.10 gi|145592048|ref|YP_001154050.1| - 0.017 15.8 1.3 0.019 15.7 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) zinc_ribbon_2 PF13240.6 gi|145592048|ref|YP_001154050.1| - 0.019 14.7 2.8 0.042 13.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|145592048|ref|YP_001154050.1| - 0.033 14.2 0.7 0.054 13.5 0.7 1.4 1 1 0 1 1 1 0 CpXC protein DUF2387 PF09526.10 gi|145592048|ref|YP_001154050.1| - 0.035 14.2 0.5 0.056 13.6 0.5 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) UPF0547 PF10571.9 gi|145592048|ref|YP_001154050.1| - 0.061 13.4 0.2 0.39 10.8 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Mu-like_Com PF10122.9 gi|145592048|ref|YP_001154050.1| - 0.084 12.3 0.0 0.49 9.9 0.0 2.1 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-Mss51 PF13824.6 gi|145592048|ref|YP_001154050.1| - 0.2 11.8 1.5 1.1 9.4 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TPP_enzyme_C PF02775.21 gi|145592049|ref|YP_001154051.1| - 1.4e-20 73.7 0.3 4e-20 72.2 0.3 1.8 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|145592049|ref|YP_001154051.1| - 6.8e-14 52.2 0.0 1.2e-13 51.4 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|145592049|ref|YP_001154051.1| - 2.3e-13 49.4 15.4 3.5e-09 36.1 6.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145592049|ref|YP_001154051.1| - 1.8e-09 37.6 8.9 3.2e-09 36.8 8.9 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145592049|ref|YP_001154051.1| - 1.2e-08 34.5 11.4 0.00022 21.1 3.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145592049|ref|YP_001154051.1| - 2.3e-07 30.6 19.9 3.1e-06 27.0 5.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145592049|ref|YP_001154051.1| - 5.3e-07 30.1 10.0 4e-06 27.3 10.1 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592049|ref|YP_001154051.1| - 2.7e-06 27.4 5.4 0.00023 21.2 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145592049|ref|YP_001154051.1| - 7e-06 26.1 7.7 1.6e-05 25.0 7.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592049|ref|YP_001154051.1| - 1.4e-05 25.9 4.1 0.00032 21.6 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain TPP_enzyme_N PF02776.18 gi|145592049|ref|YP_001154051.1| - 2.6e-05 23.9 2.0 0.018 14.7 0.3 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transket_pyr PF02779.24 gi|145592049|ref|YP_001154051.1| - 0.0011 18.7 0.5 0.029 14.1 0.2 2.8 2 1 0 2 2 2 1 Transketolase, pyrimidine binding domain Fer4_4 PF12800.7 gi|145592049|ref|YP_001154051.1| - 0.0024 18.2 10.2 0.075 13.6 1.2 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Transketolase_C PF02780.20 gi|145592049|ref|YP_001154051.1| - 0.0048 16.8 2.4 0.017 15.0 0.2 2.7 3 0 0 3 3 3 1 Transketolase, C-terminal domain Fer4_13 PF13370.6 gi|145592049|ref|YP_001154051.1| - 0.018 15.6 8.3 0.9 10.1 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I E1_dh PF00676.20 gi|145592049|ref|YP_001154051.1| - 0.027 13.4 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component Fer4_15 PF13459.6 gi|145592049|ref|YP_001154051.1| - 0.033 14.9 9.2 0.82 10.5 2.7 2.7 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|145592049|ref|YP_001154051.1| - 0.067 13.6 12.3 5.6 7.5 12.3 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145592049|ref|YP_001154051.1| - 0.36 11.7 10.7 1 10.3 3.9 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145592049|ref|YP_001154051.1| - 0.49 11.0 12.0 1.3e+02 3.2 12.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain POR PF01558.18 gi|145592050|ref|YP_001154052.1| - 4.6e-38 131.1 0.0 5.7e-38 130.7 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase IDEAL PF08858.10 gi|145592050|ref|YP_001154052.1| - 0.31 10.8 0.4 0.49 10.2 0.4 1.3 1 0 0 1 1 1 0 IDEAL domain RIO1 PF01163.22 gi|145592051|ref|YP_001154053.1| - 5e-46 156.7 0.0 6.8e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|145592051|ref|YP_001154053.1| - 2.8e-06 27.4 0.0 4.1e-05 23.6 0.0 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|145592051|ref|YP_001154053.1| - 8e-05 22.1 0.0 0.0005 19.5 0.0 1.9 1 1 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.14 gi|145592051|ref|YP_001154053.1| - 0.016 14.6 0.5 5.1 6.4 0.0 2.9 3 0 0 3 3 3 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Kdo PF06293.14 gi|145592051|ref|YP_001154053.1| - 0.025 14.0 0.0 2.5 7.4 0.0 2.2 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family KH_2 PF07650.17 gi|145592052|ref|YP_001154054.1| - 0.38 10.6 3.0 3.5 7.5 2.3 2.7 2 1 0 2 2 2 0 KH domain Ribosomal_S3Ae PF01015.18 gi|145592053|ref|YP_001154055.1| - 8.5e-56 188.7 0.8 1e-55 188.5 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Phage_TAC_5 PF08890.11 gi|145592053|ref|YP_001154055.1| - 0.03 14.3 0.2 0.057 13.4 0.2 1.4 1 0 0 1 1 1 0 Phage XkdN-like tail assembly chaperone protein, TAC AsnC_trans_reg PF01037.21 gi|145592054|ref|YP_001154056.1| - 4.1e-23 81.1 0.0 6.2e-23 80.6 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|145592054|ref|YP_001154056.1| - 1.2e-12 47.4 0.2 2.2e-12 46.6 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|145592054|ref|YP_001154056.1| - 3.6e-10 39.2 0.7 8.3e-10 38.1 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145592054|ref|YP_001154056.1| - 0.0035 17.2 0.1 0.0068 16.3 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|145592054|ref|YP_001154056.1| - 0.0081 16.1 0.0 0.032 14.2 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|145592054|ref|YP_001154056.1| - 0.04 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|145592054|ref|YP_001154056.1| - 0.047 13.6 0.1 0.095 12.6 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|145592054|ref|YP_001154056.1| - 0.066 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|145592054|ref|YP_001154056.1| - 0.087 12.6 0.1 0.16 11.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|145592056|ref|YP_001154058.1| - 1.5e-16 60.1 0.2 1.7e-16 59.9 0.2 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|145592056|ref|YP_001154058.1| - 0.00011 22.1 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 GYD domain HMA PF00403.26 gi|145592056|ref|YP_001154058.1| - 0.00093 19.6 0.1 0.0025 18.2 0.0 1.7 1 1 1 2 2 2 1 Heavy-metal-associated domain NapD PF03927.13 gi|145592056|ref|YP_001154058.1| - 0.042 13.9 0.2 0.098 12.7 0.2 1.5 1 1 0 1 1 1 0 NapD protein Spore_YhcN_YlaJ PF09580.10 gi|145592056|ref|YP_001154058.1| - 0.066 13.3 0.6 0.075 13.1 0.6 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) FtsX_ECD PF18075.1 gi|145592056|ref|YP_001154058.1| - 0.099 13.3 0.3 3.1 8.5 0.0 2.1 2 0 0 2 2 2 0 FtsX extracellular domain GATase_6 PF13522.6 gi|145592057|ref|YP_001154059.1| - 3.6e-11 43.4 0.1 5.4e-11 42.8 0.1 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|145592057|ref|YP_001154059.1| - 7.1e-05 21.8 0.1 0.00021 20.3 0.1 1.8 2 1 0 2 2 2 1 Glutamine amidotransferases class-II MoeA_N PF03453.17 gi|145592059|ref|YP_001154061.1| - 4.2e-41 140.3 0.6 7.4e-41 139.5 0.6 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|145592059|ref|YP_001154061.1| - 2.7e-27 95.2 0.2 5e-27 94.3 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|145592059|ref|YP_001154061.1| - 2.5e-16 59.6 0.3 1.3e-15 57.3 0.1 2.3 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like PF12727.7 gi|145592060|ref|YP_001154062.1| - 2.5e-59 199.7 0.4 7.4e-59 198.1 0.1 1.9 2 0 0 2 2 2 1 PBP superfamily domain MoeA_N PF03453.17 gi|145592060|ref|YP_001154062.1| - 1.4e-45 154.9 1.3 2.5e-45 154.0 1.3 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|145592060|ref|YP_001154062.1| - 5.9e-29 100.6 0.3 1.3e-28 99.5 0.1 1.7 2 0 0 2 2 2 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|145592060|ref|YP_001154062.1| - 2.3e-15 56.5 0.1 6.6e-15 55.1 0.1 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|145592060|ref|YP_001154062.1| - 9.5e-06 25.5 0.0 1.9e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|145592060|ref|YP_001154062.1| - 0.0045 16.6 0.0 0.01 15.5 0.0 1.6 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.20 gi|145592060|ref|YP_001154062.1| - 0.0056 16.1 0.0 0.02 14.3 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 LSDAT_prok PF18171.1 gi|145592060|ref|YP_001154062.1| - 0.0093 15.2 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 1 SLOG in TRPM, prokaryote T2SSE PF00437.20 gi|145592060|ref|YP_001154062.1| - 0.011 14.8 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Peptidase_M48 PF01435.18 gi|145592062|ref|YP_001154064.1| - 1.2e-45 155.8 0.1 2.1e-45 154.9 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M48 Tmpp129 PF10272.9 gi|145592062|ref|YP_001154064.1| - 1.1 8.4 3.9 1.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Putative transmembrane protein precursor LRR19-TM PF15176.6 gi|145592062|ref|YP_001154064.1| - 6.1 6.9 6.1 25 4.9 0.4 3.0 2 1 1 3 3 3 0 Leucine-rich repeat family 19 TM domain BPD_transp_1 PF00528.22 gi|145592064|ref|YP_001154066.1| - 2.7e-15 56.6 17.8 2.7e-15 56.6 17.8 1.7 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3149 PF11346.8 gi|145592064|ref|YP_001154066.1| - 1.2 8.9 4.6 1.7 8.3 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3149) BPD_transp_1 PF00528.22 gi|145592065|ref|YP_001154067.1| - 3.5e-12 46.4 20.8 3.5e-12 46.4 20.8 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TM_PBP2_N PF16296.5 gi|145592065|ref|YP_001154067.1| - 0.006 16.7 2.6 0.013 15.6 2.6 1.6 1 0 0 1 1 1 1 N-terminal of TM subunit in PBP-dependent ABC transporters Caveolin PF01146.17 gi|145592065|ref|YP_001154067.1| - 1.4 8.8 6.7 4.1 7.4 2.9 2.7 2 0 0 2 2 2 0 Caveolin SBP_bac_8 PF13416.6 gi|145592066|ref|YP_001154068.1| - 6.8e-43 147.5 2.1 9.6e-43 147.0 2.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|145592066|ref|YP_001154068.1| - 1.7e-27 97.2 9.0 3e-27 96.4 9.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|145592066|ref|YP_001154068.1| - 1.4e-05 24.7 0.1 0.00042 19.8 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein OAD_gamma PF04277.13 gi|145592066|ref|YP_001154068.1| - 0.94 10.1 3.3 4.7 7.9 3.3 2.2 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain SOG2 PF10428.9 gi|145592066|ref|YP_001154068.1| - 1.3 8.2 5.1 1.7 7.7 5.1 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Glyco_hydro_57 PF03065.15 gi|145592067|ref|YP_001154069.1| - 3.9e-93 312.2 0.0 5.3e-93 311.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Glucodextran_C PF09985.9 gi|145592067|ref|YP_001154069.1| - 3e-62 210.1 0.0 5.9e-62 209.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase DUF3246 PF11596.8 gi|145592067|ref|YP_001154069.1| - 2 7.8 16.7 3.1 7.1 16.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3246) NTP_transf_3 PF12804.7 gi|145592068|ref|YP_001154070.1| - 3.5e-24 86.0 0.0 5.6e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Stomoxyn PF11585.8 gi|145592068|ref|YP_001154070.1| - 0.5 10.4 3.4 2.3 8.3 0.5 2.7 2 0 0 2 2 2 0 Insect antimicrobial peptide, stomoxyn Retrotran_gag_3 PF14244.6 gi|145592069|ref|YP_001154071.1| - 0.039 13.8 0.1 0.082 12.7 0.1 1.5 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type HEPN PF05168.14 gi|145592070|ref|YP_001154072.1| - 6.3e-05 23.1 0.1 0.00012 22.2 0.0 1.5 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|145592070|ref|YP_001154072.1| - 0.0044 16.9 0.0 0.0085 16.0 0.0 1.4 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Aminotran_5 PF00266.19 gi|145592071|ref|YP_001154073.1| - 4.7e-27 94.9 0.0 6.1e-27 94.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|145592071|ref|YP_001154073.1| - 5.2e-05 22.7 0.3 7.7e-05 22.2 0.3 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|145592071|ref|YP_001154073.1| - 0.0034 16.6 0.0 0.0066 15.7 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II ELFV_dehydrog PF00208.21 gi|145592072|ref|YP_001154074.1| - 8.4e-71 238.5 0.3 1.1e-70 238.1 0.3 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|145592072|ref|YP_001154074.1| - 1.2e-50 170.8 0.0 1.9e-50 170.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|145592072|ref|YP_001154074.1| - 0.0016 17.8 0.3 0.0016 17.8 0.3 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|145592072|ref|YP_001154074.1| - 0.025 14.7 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ROK PF00480.20 gi|145592073|ref|YP_001154075.1| - 9.1e-53 179.6 0.0 1.1e-52 179.4 0.0 1.1 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|145592073|ref|YP_001154075.1| - 0.00053 19.6 0.0 0.00076 19.0 0.0 1.5 1 1 1 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|145592073|ref|YP_001154075.1| - 0.0012 18.5 0.0 0.0024 17.5 0.0 1.5 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain Hydant_A_N PF05378.13 gi|145592073|ref|YP_001154075.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|145592073|ref|YP_001154075.1| - 0.11 11.0 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 MutL protein MASE2 PF05230.11 gi|145592073|ref|YP_001154075.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 MASE2 domain Ribosomal_L27A PF00828.19 gi|145592074|ref|YP_001154076.1| - 3.7e-18 66.4 0.2 3.7e-18 66.4 0.2 1.4 1 1 1 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WHEP-TRS PF00458.20 gi|145592074|ref|YP_001154076.1| - 0.48 10.6 0.0 0.48 10.6 0.0 1.7 2 0 0 2 2 2 0 WHEP-TRS domain SecY PF00344.20 gi|145592075|ref|YP_001154077.1| - 2.5e-52 178.0 18.5 3.4e-52 177.6 18.5 1.2 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|145592075|ref|YP_001154077.1| - 0.0087 15.9 0.5 0.036 13.9 0.5 2.0 2 0 0 2 2 2 1 Plug domain of Sec61p Methyltrn_RNA_3 PF02598.17 gi|145592077|ref|YP_001154079.1| - 1.2e-46 159.5 0.0 1.4e-46 159.3 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase LPD38 PF18857.1 gi|145592077|ref|YP_001154079.1| - 0.17 12.0 0.1 0.29 11.3 0.1 1.3 1 0 0 1 1 1 0 Large polyvalent protein associated domain 38 NTP_transferase PF00483.23 gi|145592078|ref|YP_001154080.1| - 3e-36 125.3 0.0 4.2e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|145592078|ref|YP_001154080.1| - 7.1e-09 35.0 11.8 0.00022 20.8 0.9 4.0 1 1 3 4 4 4 4 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|145592078|ref|YP_001154080.1| - 1.9e-05 23.1 1.0 2.6e-05 22.6 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|145592078|ref|YP_001154080.1| - 3.5e-05 22.9 0.4 0.057 12.3 0.1 2.7 2 1 1 3 3 3 2 L-fucokinase NTP_transf_3 PF12804.7 gi|145592078|ref|YP_001154080.1| - 0.00096 19.5 0.0 0.0028 18.0 0.0 1.7 2 0 0 2 2 2 1 MobA-like NTP transferase domain Glyco_transf_5 PF08323.11 gi|145592079|ref|YP_001154081.1| - 2.9e-43 148.3 0.0 4.3e-43 147.8 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.20 gi|145592079|ref|YP_001154081.1| - 1.5e-25 89.7 0.0 3e-25 88.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145592079|ref|YP_001154081.1| - 8.6e-19 68.3 0.1 4.9e-18 65.9 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|145592079|ref|YP_001154081.1| - 1.3e-13 51.3 2.1 3.3e-12 46.7 2.1 2.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|145592079|ref|YP_001154081.1| - 7.8e-10 39.4 2.3 7.8e-10 39.4 2.3 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_hydro_57 PF03065.15 gi|145592080|ref|YP_001154082.1| - 3.8e-65 220.2 0.0 6e-65 219.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|145592080|ref|YP_001154082.1| - 0.00011 22.0 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase AFOR_C PF01314.18 gi|145592081|ref|YP_001154083.1| - 9e-119 396.9 0.0 1.1e-118 396.6 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|145592081|ref|YP_001154083.1| - 5.6e-79 264.6 0.3 9e-79 263.9 0.3 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Phosphorylase PF00343.20 gi|145592082|ref|YP_001154084.1| - 1.1e-09 37.1 0.0 1.6e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.20 gi|145592082|ref|YP_001154084.1| - 4.9e-07 29.4 0.0 1.1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|145592082|ref|YP_001154084.1| - 0.0006 20.2 0.0 0.0037 17.7 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Annexin_like PF18411.1 gi|145592082|ref|YP_001154084.1| - 0.19 12.0 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Annexin-like domain ThiI PF02568.14 gi|145592083|ref|YP_001154085.1| - 2.1e-55 187.4 0.0 3e-55 186.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|145592083|ref|YP_001154085.1| - 4.7e-19 68.9 0.5 1.7e-18 67.1 0.1 2.2 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|145592083|ref|YP_001154085.1| - 6.7e-08 33.0 0.0 3e-07 30.9 0.0 2.0 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|145592083|ref|YP_001154085.1| - 2.6e-06 27.1 0.0 0.029 13.9 0.0 2.5 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|145592083|ref|YP_001154085.1| - 0.0055 16.5 0.0 0.5 10.1 0.0 2.3 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.16 gi|145592083|ref|YP_001154085.1| - 0.0085 14.9 0.1 0.02 13.7 0.1 1.6 2 0 0 2 2 2 1 tRNA methyl transferase Lactamase_B_2 PF12706.7 gi|145592084|ref|YP_001154086.1| - 1.4e-07 31.2 0.1 2.5e-07 30.4 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|145592084|ref|YP_001154086.1| - 2.1e-07 31.0 0.0 3.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.12 gi|145592084|ref|YP_001154086.1| - 3.3e-06 26.9 0.0 0.0001 22.1 0.0 2.3 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|145592084|ref|YP_001154086.1| - 7.6e-05 22.8 7.0 0.00087 19.3 6.9 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|145592084|ref|YP_001154086.1| - 0.0014 18.1 0.0 0.076 12.4 0.0 2.2 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily domain DNA_pol_B PF00136.21 gi|145592085|ref|YP_001154087.1| - 3.6e-72 243.5 0.0 4.8e-72 243.1 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|145592085|ref|YP_001154087.1| - 1.3e-33 116.5 0.0 3.5e-31 108.6 0.0 2.4 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|145592085|ref|YP_001154087.1| - 6.6e-07 29.5 0.0 1.2e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|145592085|ref|YP_001154087.1| - 1.4e-06 28.2 0.0 2.6e-06 27.3 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF5046 PF16465.5 gi|145592085|ref|YP_001154087.1| - 0.0062 16.0 0.0 0.016 14.7 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF5046) DUF3198 PF11433.8 gi|145592085|ref|YP_001154087.1| - 0.085 12.8 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) Toprim_4 PF13662.6 gi|145592087|ref|YP_001154089.1| - 3.4e-08 33.9 0.2 1.2e-07 32.1 0.2 2.0 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|145592087|ref|YP_001154089.1| - 9.6e-05 22.7 0.0 0.00032 21.0 0.0 1.9 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|145592087|ref|YP_001154089.1| - 0.00018 21.7 1.3 0.0013 18.9 0.1 2.6 2 0 0 2 2 2 1 Toprim domain PBSX_XtrA PF17356.2 gi|145592087|ref|YP_001154089.1| - 0.017 15.0 0.7 0.084 12.8 0.1 2.4 2 0 0 2 2 2 0 Phage-like element PBSX protein XtrA Ribosomal_60s PF00428.19 gi|145592087|ref|YP_001154089.1| - 0.052 14.1 2.0 0.21 12.2 1.9 2.1 1 1 0 1 1 1 0 60s Acidic ribosomal protein Sds3 PF08598.11 gi|145592087|ref|YP_001154089.1| - 0.1 12.6 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Sds3-like HAD_2 PF13419.6 gi|145592088|ref|YP_001154090.1| - 7.7e-28 97.8 0.0 9.3e-28 97.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145592088|ref|YP_001154090.1| - 2.3e-13 50.9 0.9 7.2e-11 42.8 0.9 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145592088|ref|YP_001154090.1| - 4e-09 37.1 0.1 1.3e-08 35.5 0.1 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|145592088|ref|YP_001154090.1| - 8.1e-06 25.8 0.1 1.4e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_3 PF08282.12 gi|145592088|ref|YP_001154090.1| - 0.0014 18.4 0.1 0.29 10.8 0.0 2.3 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|145592088|ref|YP_001154090.1| - 0.006 16.2 0.0 0.053 13.0 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase CPBP PF02517.16 gi|145592089|ref|YP_001154091.1| - 2.9e-09 37.2 6.1 2.9e-09 37.2 6.1 2.5 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF72 PF01904.18 gi|145592090|ref|YP_001154092.1| - 4.9e-28 98.7 0.0 6.3e-28 98.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 DUF3275 PF11679.8 gi|145592092|ref|YP_001154094.1| - 0.068 13.1 0.0 0.076 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) Asparaginase_2 PF01112.18 gi|145592093|ref|YP_001154095.1| - 2e-82 276.6 4.5 2.4e-82 276.4 4.5 1.0 1 0 0 1 1 1 1 Asparaginase LPD30 PF18850.1 gi|145592093|ref|YP_001154095.1| - 0.078 12.7 0.1 1.5 8.6 0.1 2.6 2 1 0 2 2 2 0 Large polyvalent protein associated domain 30 S4 PF01479.25 gi|145592094|ref|YP_001154096.1| - 6.3e-16 57.8 0.1 1.5e-15 56.6 0.1 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|145592094|ref|YP_001154096.1| - 0.019 15.9 0.5 0.024 15.5 0.3 1.3 1 1 0 1 1 1 0 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|145592095|ref|YP_001154097.1| - 2.4e-36 124.9 0.0 2.9e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|145592095|ref|YP_001154097.1| - 0.11 11.3 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) BPD_transp_1 PF00528.22 gi|145592096|ref|YP_001154098.1| - 2.5e-28 99.1 16.7 2.5e-28 99.1 16.7 2.0 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|145592096|ref|YP_001154098.1| - 0.0089 16.0 0.0 0.0089 16.0 0.0 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C NADH_B2 PF14813.6 gi|145592096|ref|YP_001154098.1| - 0.73 9.7 5.9 12 5.7 0.2 2.7 2 0 0 2 2 2 0 NADH dehydrogenase 1 beta subcomplex subunit 2 BPD_transp_1 PF00528.22 gi|145592097|ref|YP_001154099.1| - 5.5e-31 107.7 15.2 5.5e-31 107.7 15.2 2.4 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component Na_Pi_cotrans PF02690.15 gi|145592097|ref|YP_001154099.1| - 0.059 13.5 0.3 0.059 13.5 0.3 2.8 2 1 1 3 3 3 0 Na+/Pi-cotransporter U3snoRNP10 PF12397.8 gi|145592097|ref|YP_001154099.1| - 0.086 13.2 0.2 0.18 12.1 0.2 1.5 1 0 0 1 1 1 0 U3 small nucleolar RNA-associated protein 10 SBP_bac_5 PF00496.22 gi|145592098|ref|YP_001154100.1| - 2.9e-22 79.2 5.6 2.3e-18 66.3 0.0 2.9 2 1 1 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Gram_pos_anchor PF00746.21 gi|145592098|ref|YP_001154100.1| - 0.019 14.9 2.7 0.047 13.6 2.7 1.6 1 0 0 1 1 1 0 LPXTG cell wall anchor motif N_BRCA1_IG PF16158.5 gi|145592098|ref|YP_001154100.1| - 0.039 14.7 0.0 0.096 13.4 0.0 1.6 1 0 0 1 1 1 0 Ig-like domain from next to BRCA1 gene MGC-24 PF05283.11 gi|145592098|ref|YP_001154100.1| - 0.67 10.4 4.0 1.3 9.5 4.0 1.4 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin Claudin_2 PF13903.6 gi|145592099|ref|YP_001154101.1| - 0.0029 17.4 1.3 0.003 17.3 1.3 1.0 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction UPF0242 PF06785.11 gi|145592099|ref|YP_001154101.1| - 0.025 14.7 0.9 0.027 14.6 0.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF2207 PF09972.9 gi|145592099|ref|YP_001154101.1| - 0.12 11.2 0.9 0.13 11.0 0.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2309 PF10070.9 gi|145592099|ref|YP_001154101.1| - 0.16 10.3 0.0 0.18 10.1 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) Sigma_reg_N PF13800.6 gi|145592099|ref|YP_001154101.1| - 0.19 12.1 2.7 4.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Vac7 PF12751.7 gi|145592099|ref|YP_001154101.1| - 0.27 10.6 0.5 0.3 10.5 0.5 1.0 1 0 0 1 1 1 0 Vacuolar segregation subunit 7 YoqO PF14037.6 gi|145592099|ref|YP_001154101.1| - 0.79 10.3 7.4 12 6.4 7.4 1.9 1 1 0 1 1 1 0 YoqO-like protein Comm PF15957.5 gi|145592099|ref|YP_001154101.1| - 9.6 6.6 8.8 1.3 9.4 3.5 1.9 1 1 1 2 2 2 0 Commissureless Glucodextran_C PF09985.9 gi|145592100|ref|YP_001154102.1| - 5.1e-39 134.1 0.1 9.6e-21 74.3 0.4 2.2 1 1 1 2 2 2 2 C-terminal binding-module, SLH-like, of glucodextranase TrbC PF04956.13 gi|145592101|ref|YP_001154103.1| - 0.0083 16.3 2.6 0.037 14.3 2.6 1.8 1 1 0 1 1 1 1 TrbC/VIRB2 family PhaG_MnhG_YufB PF03334.14 gi|145592101|ref|YP_001154103.1| - 0.0086 16.3 1.2 0.0086 16.3 1.2 1.9 2 0 0 2 2 2 1 Na+/H+ antiporter subunit Orthopox_B11R PF07033.11 gi|145592101|ref|YP_001154103.1| - 0.017 14.9 0.5 0.026 14.3 0.5 1.2 1 0 0 1 1 1 0 Orthopoxvirus B11R protein Radical_SAM PF04055.21 gi|145592102|ref|YP_001154104.1| - 5.7e-07 30.1 0.0 1.3e-06 28.9 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145592102|ref|YP_001154104.1| - 0.00067 19.9 0.0 0.001 19.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TPR_15 PF13429.6 gi|145592102|ref|YP_001154104.1| - 0.0033 16.7 0.1 0.0047 16.2 0.1 1.1 1 0 0 1 1 1 1 Tetratricopeptide repeat Fer4_14 PF13394.6 gi|145592102|ref|YP_001154104.1| - 0.0033 17.5 0.0 0.0061 16.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain AXE1 PF05448.12 gi|145592102|ref|YP_001154104.1| - 0.015 14.0 0.0 0.02 13.6 0.0 1.1 1 0 0 1 1 1 0 Acetyl xylan esterase (AXE1) ssDBP_DBD PF18361.1 gi|145592103|ref|YP_001154105.1| - 3e-61 205.6 2.2 3.8e-61 205.2 2.2 1.1 1 0 0 1 1 1 1 Single stranded DNA-binding protein ss DNA binding domain ZapB PF06005.12 gi|145592103|ref|YP_001154105.1| - 0.00049 20.5 3.8 0.00079 19.8 3.8 1.3 1 0 0 1 1 1 1 Cell division protein ZapB bZIP_1 PF00170.21 gi|145592103|ref|YP_001154105.1| - 0.0012 18.9 1.5 0.0022 18.0 1.5 1.3 1 0 0 1 1 1 1 bZIP transcription factor Seryl_tRNA_N PF02403.22 gi|145592103|ref|YP_001154105.1| - 0.003 17.8 0.0 0.32 11.2 0.3 2.1 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain bZIP_2 PF07716.15 gi|145592103|ref|YP_001154105.1| - 0.0056 16.7 1.0 0.013 15.6 1.0 1.6 1 0 0 1 1 1 1 Basic region leucine zipper Cnn_1N PF07989.11 gi|145592103|ref|YP_001154105.1| - 0.0058 16.8 2.4 0.011 15.9 2.4 1.4 1 0 0 1 1 1 1 Centrosomin N-terminal motif 1 Phlebovirus_NSM PF07246.11 gi|145592103|ref|YP_001154105.1| - 0.038 13.4 0.1 0.045 13.1 0.1 1.1 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DivIC PF04977.15 gi|145592103|ref|YP_001154105.1| - 0.043 13.6 0.5 0.077 12.8 0.5 1.4 1 0 0 1 1 1 0 Septum formation initiator YabA PF06156.13 gi|145592103|ref|YP_001154105.1| - 0.069 13.8 0.6 0.19 12.4 0.6 1.7 1 0 0 1 1 1 0 Initiation control protein YabA HMMR_C PF15908.5 gi|145592103|ref|YP_001154105.1| - 0.073 13.3 1.2 0.073 13.3 1.2 1.5 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor C-terminal DUF1640 PF07798.11 gi|145592103|ref|YP_001154105.1| - 0.075 13.1 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) DUF5320 PF17253.2 gi|145592103|ref|YP_001154105.1| - 0.12 13.4 0.3 0.12 13.4 0.3 2.2 2 1 0 2 2 2 0 Family of unknown function (DUF5320) HALZ PF02183.18 gi|145592103|ref|YP_001154105.1| - 0.17 12.2 3.0 0.36 11.1 3.0 1.6 1 0 0 1 1 1 0 Homeobox associated leucine zipper IFP_35_N PF07334.13 gi|145592103|ref|YP_001154105.1| - 0.18 11.9 2.2 0.31 11.2 2.2 1.3 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus NUDIX PF00293.28 gi|145592104|ref|YP_001154106.1| - 6.8e-16 58.5 0.7 6.8e-16 58.5 0.7 1.5 2 0 0 2 2 2 1 NUDIX domain Aminotran_1_2 PF00155.21 gi|145592105|ref|YP_001154107.1| - 6.4e-54 183.5 0.0 7.3e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|145592105|ref|YP_001154107.1| - 6.7e-09 34.7 0.0 9.5e-09 34.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|145592105|ref|YP_001154107.1| - 6.8e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_MocR PF12897.7 gi|145592105|ref|YP_001154107.1| - 0.012 14.5 0.0 0.017 13.9 0.0 1.5 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase DUF498 PF04430.14 gi|145592105|ref|YP_001154107.1| - 0.035 14.2 0.1 0.52 10.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) NurA PF09376.10 gi|145592106|ref|YP_001154108.1| - 0.0032 17.2 0.9 0.056 13.1 0.9 2.6 1 1 0 1 1 1 1 NurA domain AAA_16 PF13191.6 gi|145592108|ref|YP_001154110.1| - 0.0046 17.4 7.0 0.0054 17.1 0.0 4.0 4 2 1 5 5 5 1 AAA ATPase domain Rrf2 PF02082.20 gi|145592108|ref|YP_001154110.1| - 0.027 14.8 0.4 0.15 12.4 0.1 2.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|145592108|ref|YP_001154110.1| - 0.094 12.7 0.0 0.59 10.2 0.0 2.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TusA PF01206.17 gi|145592108|ref|YP_001154110.1| - 0.14 12.0 0.2 13 5.7 0.0 3.5 3 0 0 3 3 3 0 Sulfurtransferase TusA TrmB PF01978.19 gi|145592108|ref|YP_001154110.1| - 0.17 11.8 6.5 0.16 11.9 0.2 3.6 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB AAA_22 PF13401.6 gi|145592108|ref|YP_001154110.1| - 0.24 11.7 2.1 27 5.0 0.0 3.8 4 1 0 5 5 5 0 AAA domain LemA PF04011.12 gi|145592108|ref|YP_001154110.1| - 0.26 11.1 3.9 0.61 9.9 3.9 1.6 1 0 0 1 1 1 0 LemA family CbiA PF01656.23 gi|145592109|ref|YP_001154111.1| - 0.011 15.8 1.8 0.15 12.1 1.8 2.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|145592109|ref|YP_001154111.1| - 0.084 12.8 0.1 5.6 6.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain Metallophos_2 PF12850.7 gi|145592110|ref|YP_001154112.1| - 9.5e-10 38.9 0.1 1.3e-09 38.4 0.1 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|145592110|ref|YP_001154112.1| - 5.7e-09 36.8 0.3 3.5e-08 34.2 0.3 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase CLP1_P PF16575.5 gi|145592111|ref|YP_001154113.1| - 1.3e-31 109.9 0.0 1.8e-31 109.4 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop CbiA PF01656.23 gi|145592111|ref|YP_001154113.1| - 5.4e-06 26.5 0.0 7e-06 26.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|145592111|ref|YP_001154113.1| - 0.0011 18.5 0.2 0.0021 17.5 0.1 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|145592111|ref|YP_001154113.1| - 0.0055 16.6 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|145592111|ref|YP_001154113.1| - 0.015 14.3 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|145592111|ref|YP_001154113.1| - 0.016 14.9 1.4 0.089 12.4 1.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|145592111|ref|YP_001154113.1| - 0.022 14.5 0.0 0.037 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|145592111|ref|YP_001154113.1| - 0.03 14.1 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF1611 PF07755.11 gi|145592111|ref|YP_001154113.1| - 0.034 13.4 0.1 1.5 8.0 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1611_C) P-loop domain UPF0128 PF03673.13 gi|145592111|ref|YP_001154113.1| - 0.079 12.4 0.1 0.28 10.7 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0128) AAA_14 PF13173.6 gi|145592111|ref|YP_001154113.1| - 0.15 12.1 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|145592112|ref|YP_001154114.1| - 1.3e-19 70.5 0.0 2.4e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|145592112|ref|YP_001154114.1| - 4.5e-19 68.6 0.0 1e-18 67.5 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|145592112|ref|YP_001154114.1| - 9.3e-10 38.5 0.0 1.9e-09 37.4 0.0 1.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_22 PF13401.6 gi|145592112|ref|YP_001154114.1| - 1.5e-06 28.5 0.0 7.7e-06 26.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|145592112|ref|YP_001154114.1| - 1.5e-06 28.6 0.0 3.3e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|145592112|ref|YP_001154114.1| - 2.1e-05 24.0 0.0 0.053 12.9 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|145592112|ref|YP_001154114.1| - 3.3e-05 23.7 0.1 0.076 12.8 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|145592112|ref|YP_001154114.1| - 3.7e-05 22.9 0.0 7.6e-05 21.9 0.0 1.5 1 0 0 1 1 1 1 MCM P-loop domain AAA_16 PF13191.6 gi|145592112|ref|YP_001154114.1| - 0.00031 21.2 0.0 0.0011 19.4 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|145592112|ref|YP_001154114.1| - 0.00055 19.7 0.0 0.00092 19.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|145592112|ref|YP_001154114.1| - 0.00062 19.9 0.0 0.0019 18.3 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|145592112|ref|YP_001154114.1| - 0.0023 17.9 0.0 0.0046 16.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_14 PF13173.6 gi|145592112|ref|YP_001154114.1| - 0.0055 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|145592112|ref|YP_001154114.1| - 0.011 15.7 0.0 0.023 14.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|145592112|ref|YP_001154114.1| - 0.021 14.1 0.0 0.19 11.0 0.0 2.2 2 0 0 2 2 2 0 KaiC TIP49 PF06068.13 gi|145592112|ref|YP_001154114.1| - 0.027 13.7 0.0 0.047 12.9 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_19 PF13245.6 gi|145592112|ref|YP_001154114.1| - 0.042 14.2 0.6 3.2 8.1 0.6 2.3 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|145592112|ref|YP_001154114.1| - 0.047 13.6 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_7 PF12775.7 gi|145592112|ref|YP_001154114.1| - 0.048 13.2 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|145592112|ref|YP_001154114.1| - 0.089 13.0 0.1 0.37 11.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|145592112|ref|YP_001154114.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|145592112|ref|YP_001154114.1| - 0.12 12.9 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|145592112|ref|YP_001154114.1| - 0.13 12.8 0.1 0.38 11.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|145592112|ref|YP_001154114.1| - 0.21 11.2 0.0 0.42 10.2 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain VWA_2 PF13519.6 gi|145592113|ref|YP_001154115.1| - 8.1e-11 42.5 0.0 1.8e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|145592113|ref|YP_001154115.1| - 9.6e-10 39.0 0.0 2e-09 37.9 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|145592113|ref|YP_001154115.1| - 4.4e-07 29.5 0.3 2e-06 27.4 0.3 2.0 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|145592113|ref|YP_001154115.1| - 6.8e-05 22.8 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF58 PF01882.18 gi|145592113|ref|YP_001154115.1| - 0.0023 18.2 0.2 0.024 14.9 0.1 2.5 2 1 1 3 3 3 1 Protein of unknown function DUF58 Phage_TAC_11 PF11836.8 gi|145592113|ref|YP_001154115.1| - 0.071 13.2 0.0 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 Phage tail tube protein, GTA-gp10 DNA_primase_lrg PF04104.14 gi|145592114|ref|YP_001154116.1| - 2.3e-35 122.3 0.0 4.9e-35 121.2 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DSBA PF01323.20 gi|145592114|ref|YP_001154116.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 DSBA-like thioredoxin domain PhdYeFM_antitox PF02604.19 gi|145592114|ref|YP_001154116.1| - 0.13 12.1 0.5 0.45 10.3 0.0 2.1 2 0 0 2 2 2 0 Antitoxin Phd_YefM, type II toxin-antitoxin system AGOG PF09171.10 gi|145592115|ref|YP_001154117.1| - 6.7e-73 245.1 0.0 8.1e-73 244.8 0.0 1.0 1 0 0 1 1 1 1 N-glycosylase/DNA lyase DUF5024 PF16427.5 gi|145592115|ref|YP_001154117.1| - 0.084 13.2 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5024) DUF126 PF01989.16 gi|145592116|ref|YP_001154118.1| - 2.1e-19 69.1 0.0 3.6e-19 68.3 0.0 1.4 1 0 0 1 1 1 1 Aconitase X swivel domain DUF521 PF04412.13 gi|145592117|ref|YP_001154119.1| - 5.3e-85 285.6 0.0 6.2e-85 285.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Glyco_trans_4_4 PF13579.6 gi|145592117|ref|YP_001154119.1| - 0.0088 16.5 0.5 0.13 12.7 0.3 2.7 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain ADH_zinc_N PF00107.26 gi|145592117|ref|YP_001154119.1| - 0.017 15.1 0.1 0.033 14.2 0.1 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase UbiD PF01977.16 gi|145592118|ref|YP_001154120.1| - 2.4e-72 244.1 0.0 2.8e-72 243.8 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Alba PF01918.21 gi|145592119|ref|YP_001154121.1| - 1.5e-15 56.8 0.9 1.5e-15 56.8 0.9 1.5 2 0 0 2 2 2 1 Alba Rpp20 PF12328.8 gi|145592119|ref|YP_001154121.1| - 0.021 14.8 1.5 0.048 13.6 1.4 1.7 1 1 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P HTH_20 PF12840.7 gi|145592121|ref|YP_001154123.1| - 2.9e-05 24.1 0.4 5.6e-05 23.1 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145592121|ref|YP_001154123.1| - 0.00011 22.0 0.1 0.00022 21.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|145592121|ref|YP_001154123.1| - 0.0076 16.2 0.1 0.015 15.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|145592121|ref|YP_001154123.1| - 0.011 15.6 0.1 0.021 14.8 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.6 gi|145592121|ref|YP_001154123.1| - 0.035 13.6 0.0 0.065 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|145592121|ref|YP_001154123.1| - 0.082 13.4 0.0 0.14 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|145592121|ref|YP_001154123.1| - 0.1 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_assoc_C PF09821.9 gi|145592121|ref|YP_001154123.1| - 0.15 12.6 0.1 0.26 11.8 0.1 1.4 1 0 0 1 1 1 0 C-terminal AAA-associated domain PrmA PF06325.13 gi|145592122|ref|YP_001154124.1| - 0.0016 17.9 0.2 0.0021 17.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|145592122|ref|YP_001154124.1| - 0.01 16.5 0.0 0.022 15.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145592122|ref|YP_001154124.1| - 0.032 14.9 0.1 0.068 13.9 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|145592122|ref|YP_001154124.1| - 0.25 11.3 0.1 0.33 10.9 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|145592122|ref|YP_001154124.1| - 0.25 10.4 0.0 0.28 10.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PhoU PF01895.19 gi|145592123|ref|YP_001154125.1| - 6.7e-19 68.1 8.3 1.1e-18 67.4 5.4 2.5 2 1 0 2 2 2 1 PhoU domain MazE_antitoxin PF04014.18 gi|145592123|ref|YP_001154125.1| - 1.2e-10 41.1 0.2 4.1e-10 39.3 0.2 2.0 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|145592123|ref|YP_001154125.1| - 0.0056 16.5 0.0 0.024 14.4 0.0 2.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 TOBE PF03459.17 gi|145592123|ref|YP_001154125.1| - 0.036 14.3 0.2 0.17 12.2 0.1 2.2 2 0 0 2 2 2 0 TOBE domain TP6A_N PF04406.14 gi|145592124|ref|YP_001154126.1| - 6.4e-22 77.3 0.0 1.3e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|145592124|ref|YP_001154126.1| - 0.0043 17.0 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function C-terminus (DUF2399) Topo-VIb_trans PF09239.11 gi|145592125|ref|YP_001154127.1| - 2.7e-58 196.3 0.0 4.2e-58 195.7 0.0 1.3 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.26 gi|145592125|ref|YP_001154127.1| - 8.5e-12 45.6 0.0 1.7e-11 44.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|145592125|ref|YP_001154127.1| - 1.3e-08 34.7 0.0 3.4e-08 33.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UPF0122 PF04297.14 gi|145592125|ref|YP_001154127.1| - 0.17 12.1 3.0 0.44 10.8 3.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Proteasome PF00227.26 gi|145592126|ref|YP_001154128.1| - 2.6e-57 193.4 0.2 6.5e-57 192.1 0.0 1.8 2 1 1 3 3 3 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|145592126|ref|YP_001154128.1| - 1.1e-12 47.4 0.3 3.5e-12 45.7 0.1 2.0 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature DUF2110 PF09883.9 gi|145592127|ref|YP_001154129.1| - 0.054 13.1 0.0 0.059 13.0 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2110) RNA_binding PF01877.17 gi|145592128|ref|YP_001154130.1| - 2.4e-27 95.6 0.2 3.2e-27 95.2 0.2 1.1 1 0 0 1 1 1 1 RNA binding GGDEF_2 PF17853.1 gi|145592128|ref|YP_001154130.1| - 0.04 14.2 0.2 0.22 11.8 0.1 1.9 2 0 0 2 2 2 0 GGDEF-like domain Tfb2_C PF18307.1 gi|145592128|ref|YP_001154130.1| - 0.14 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcription factor Tfb2 (p52) C-terminal domain ThiP_synth PF10120.9 gi|145592131|ref|YP_001154133.1| - 2.1e-30 105.5 0.3 3e-30 105.0 0.3 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|145592131|ref|YP_001154133.1| - 0.00021 21.3 0.3 0.00063 19.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_1 PF00126.27 gi|145592131|ref|YP_001154133.1| - 0.00023 21.0 0.0 0.00047 20.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_37 PF13744.6 gi|145592131|ref|YP_001154133.1| - 0.00025 20.9 0.0 0.00051 19.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|145592131|ref|YP_001154133.1| - 0.003 17.3 0.2 0.024 14.4 0.0 2.6 3 0 0 3 3 3 1 Homeodomain-like domain XAF1_C PF18608.1 gi|145592131|ref|YP_001154133.1| - 0.004 16.7 2.7 0.021 14.4 0.0 2.8 3 0 0 3 3 3 1 XIAP-associated factor 1 C-terminal domain Sigma70_r4 PF04545.16 gi|145592131|ref|YP_001154133.1| - 0.061 12.8 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|145592131|ref|YP_001154133.1| - 0.07 13.0 0.1 2.6 8.0 0.0 2.7 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family SBDS PF01172.18 gi|145592132|ref|YP_001154134.1| - 3.8e-22 78.2 0.0 7.6e-22 77.2 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|145592132|ref|YP_001154134.1| - 4.7e-19 68.5 1.1 7.5e-19 67.9 1.1 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain KH_6 PF15985.5 gi|145592133|ref|YP_001154135.1| - 1.3e-11 44.7 0.2 2.7e-11 43.6 0.2 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|145592133|ref|YP_001154135.1| - 0.00063 19.5 0.1 0.0011 18.7 0.1 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|145592133|ref|YP_001154135.1| - 0.0012 19.2 0.2 0.0012 19.2 0.2 2.4 2 1 0 2 2 2 1 S1 RNA binding domain KH_4 PF13083.6 gi|145592133|ref|YP_001154135.1| - 0.027 14.4 0.1 0.1 12.5 0.1 2.0 1 1 0 1 1 1 0 KH domain KH_2 PF07650.17 gi|145592133|ref|YP_001154135.1| - 0.087 12.7 0.9 0.29 11.0 0.9 1.9 1 1 0 1 1 1 0 KH domain ECR1_N PF14382.6 gi|145592133|ref|YP_001154135.1| - 0.092 12.6 0.0 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 Exosome complex exonuclease RRP4 N-terminal region RNase_PH PF01138.21 gi|145592134|ref|YP_001154136.1| - 1.7e-35 122.4 0.0 2.2e-35 122.1 0.0 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|145592134|ref|YP_001154136.1| - 9.4e-14 51.2 0.1 2e-13 50.1 0.0 1.6 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|145592135|ref|YP_001154137.1| - 3.7e-27 95.4 0.0 6.5e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|145592135|ref|YP_001154137.1| - 1.5e-09 37.7 0.0 2.8e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|145592136|ref|YP_001154138.1| - 4.6e-29 100.3 0.7 5.5e-29 100.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family zf-C2H2_3 PF13878.6 gi|145592136|ref|YP_001154138.1| - 0.0055 16.5 0.1 0.8 9.6 0.0 2.2 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS1595 PF12760.7 gi|145592136|ref|YP_001154138.1| - 0.0063 16.5 2.2 0.0063 16.5 2.2 1.8 2 0 0 2 2 2 1 Transposase zinc-ribbon domain IBR PF01485.21 gi|145592136|ref|YP_001154138.1| - 0.012 15.8 0.1 0.018 15.2 0.1 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain OrfB_Zn_ribbon PF07282.11 gi|145592136|ref|YP_001154138.1| - 0.013 15.4 0.6 0.021 14.7 0.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|145592136|ref|YP_001154138.1| - 0.013 15.9 1.6 2.3 8.8 0.2 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Zn_ribbon_SprT PF17283.2 gi|145592136|ref|YP_001154138.1| - 0.02 14.8 6.1 0.14 12.1 5.3 2.1 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145592136|ref|YP_001154138.1| - 0.025 14.7 0.4 4.1 7.6 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.7 gi|145592136|ref|YP_001154138.1| - 0.029 14.4 0.2 0.051 13.6 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_5 PF13719.6 gi|145592136|ref|YP_001154138.1| - 0.05 13.4 3.8 2.5 8.0 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145592136|ref|YP_001154138.1| - 0.053 13.4 4.0 2.7 8.0 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|145592136|ref|YP_001154138.1| - 0.097 12.7 0.1 0.15 12.1 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|145592136|ref|YP_001154138.1| - 0.12 12.3 0.8 0.12 12.3 0.8 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-ACC PF17848.1 gi|145592136|ref|YP_001154138.1| - 0.14 12.3 1.2 10 6.3 0.0 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-RING_4 PF14570.6 gi|145592136|ref|YP_001154138.1| - 0.14 11.9 1.2 1 9.2 0.1 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zinc_ribbon_10 PF10058.9 gi|145592136|ref|YP_001154138.1| - 0.16 11.7 2.7 5.1 6.9 3.0 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein UPF0547 PF10571.9 gi|145592136|ref|YP_001154138.1| - 0.2 11.8 4.3 2.9 8.1 0.7 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4379 PF14311.6 gi|145592136|ref|YP_001154138.1| - 0.31 11.4 7.7 6.7 7.2 0.4 3.1 2 1 1 3 3 3 0 Probable Zinc-ribbon domain zf_C2H2_10 PF18414.1 gi|145592136|ref|YP_001154138.1| - 0.38 10.3 2.6 6.2 6.5 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger zf-tcix PF14952.6 gi|145592136|ref|YP_001154138.1| - 0.54 9.9 4.6 1.2 8.9 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-ribbon_3 PF13248.6 gi|145592136|ref|YP_001154138.1| - 0.64 9.5 3.8 5.9 6.5 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|145592136|ref|YP_001154138.1| - 0.65 9.4 4.1 2.6 7.4 4.1 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger Rubredoxin_2 PF18073.1 gi|145592136|ref|YP_001154138.1| - 0.86 9.4 8.1 1 9.1 0.5 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Prefoldin_2 PF01920.20 gi|145592139|ref|YP_001154141.1| - 1.3e-26 92.6 12.2 1.5e-26 92.4 12.2 1.0 1 0 0 1 1 1 1 Prefoldin subunit DUF1640 PF07798.11 gi|145592139|ref|YP_001154141.1| - 0.0016 18.5 5.9 0.0077 16.3 2.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1640) Com_YlbF PF06133.11 gi|145592139|ref|YP_001154141.1| - 0.0078 16.8 6.9 0.018 15.6 0.4 2.1 2 0 0 2 2 2 1 Control of competence regulator ComK, YlbF/YmcA DUF4510 PF14971.6 gi|145592139|ref|YP_001154141.1| - 0.0081 16.5 1.2 0.0081 16.5 1.2 2.0 2 1 0 2 2 2 1 Domain of unknown function (DUF4510) Enkurin PF13864.6 gi|145592139|ref|YP_001154141.1| - 0.029 14.8 10.1 0.03 14.7 0.3 2.5 2 1 0 2 2 2 0 Calmodulin-binding CENP-F_leu_zip PF10473.9 gi|145592139|ref|YP_001154141.1| - 0.031 14.3 10.6 0.51 10.4 0.2 2.0 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COMM_domain PF07258.14 gi|145592139|ref|YP_001154141.1| - 0.033 14.3 1.4 0.79 9.9 0.0 2.5 2 0 0 2 2 2 0 COMM domain DUF4200 PF13863.6 gi|145592139|ref|YP_001154141.1| - 0.057 13.8 8.8 0.39 11.1 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Fzo_mitofusin PF04799.13 gi|145592139|ref|YP_001154141.1| - 0.057 13.0 5.7 0.063 12.8 0.5 2.1 1 1 1 2 2 2 0 fzo-like conserved region DUF2408 PF10303.9 gi|145592139|ref|YP_001154141.1| - 0.067 13.8 6.0 0.11 13.1 6.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) OrfB_IS605 PF01385.19 gi|145592139|ref|YP_001154141.1| - 0.089 13.0 1.3 0.46 10.7 0.1 2.0 2 0 0 2 2 2 0 Probable transposase Gon7 PF08738.10 gi|145592139|ref|YP_001154141.1| - 0.1 12.7 1.5 1.2 9.3 0.1 2.2 2 0 0 2 2 2 0 Gon7 family Tho2 PF11262.8 gi|145592139|ref|YP_001154141.1| - 0.11 11.7 2.5 0.12 11.5 2.5 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 HAUS5 PF14817.6 gi|145592139|ref|YP_001154141.1| - 0.14 10.9 5.8 0.16 10.7 5.8 1.0 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Prefoldin PF02996.17 gi|145592139|ref|YP_001154141.1| - 0.25 11.3 9.2 0.48 10.4 1.9 2.3 1 1 1 2 2 2 0 Prefoldin subunit Cauli_AT PF03233.13 gi|145592139|ref|YP_001154141.1| - 0.28 11.1 7.1 1.8 8.5 0.5 2.0 1 1 1 2 2 2 0 Aphid transmission protein PilJ PF13675.6 gi|145592139|ref|YP_001154141.1| - 0.37 10.8 5.1 5.7 7.0 0.5 2.6 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DHR10 PF18595.1 gi|145592139|ref|YP_001154141.1| - 0.47 10.5 13.7 2.3 8.3 6.7 2.1 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain FadA PF09403.10 gi|145592139|ref|YP_001154141.1| - 0.49 10.9 11.1 0.48 10.9 1.8 2.3 1 1 1 2 2 2 0 Adhesion protein FadA HlyD_2 PF12700.7 gi|145592139|ref|YP_001154141.1| - 0.54 8.9 4.0 0.63 8.7 4.0 1.0 1 0 0 1 1 1 0 HlyD family secretion protein DinB_2 PF12867.7 gi|145592139|ref|YP_001154141.1| - 0.69 10.4 3.2 41 4.7 0.1 2.9 1 1 1 2 2 2 0 DinB superfamily DUF3086 PF11285.8 gi|145592139|ref|YP_001154141.1| - 0.93 8.5 6.4 0.38 9.8 2.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) DUF948 PF06103.11 gi|145592139|ref|YP_001154141.1| - 1.2 9.5 4.5 9.9 6.5 0.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.9 gi|145592139|ref|YP_001154141.1| - 1.2 8.2 6.1 1.6 7.7 6.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CENP-Q PF13094.6 gi|145592139|ref|YP_001154141.1| - 1.4 9.1 11.0 3.3 7.9 4.8 2.3 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Cor1 PF04803.12 gi|145592139|ref|YP_001154141.1| - 1.7 8.9 10.8 5.4 7.2 10.8 1.7 1 1 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Mod_r PF07200.13 gi|145592139|ref|YP_001154141.1| - 2.2 8.4 13.6 0.8 9.8 5.5 2.0 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF724 PF05266.14 gi|145592139|ref|YP_001154141.1| - 2.5 7.9 8.9 15 5.4 8.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF724) DivIC PF04977.15 gi|145592139|ref|YP_001154141.1| - 3.4 7.5 14.8 11 5.9 5.1 2.7 2 1 0 2 2 2 0 Septum formation initiator TPR_MLP1_2 PF07926.12 gi|145592139|ref|YP_001154141.1| - 4 7.5 15.1 6.9 6.7 2.4 2.2 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|145592139|ref|YP_001154141.1| - 5.7 6.2 13.7 1.8 7.8 2.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|145592139|ref|YP_001154141.1| - 6.4 7.3 14.9 12 6.4 14.7 1.6 1 1 0 1 1 1 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|145592139|ref|YP_001154141.1| - 6.4 7.0 14.9 0.53 10.4 6.4 2.5 2 1 0 2 2 2 0 bZIP transcription factor NYD-SP28_assoc PF14775.6 gi|145592139|ref|YP_001154141.1| - 6.9 6.9 9.0 21 5.3 0.1 2.4 2 0 0 2 2 2 0 Sperm tail C-terminal domain NuA4 PF09340.10 gi|145592139|ref|YP_001154141.1| - 8.2 6.4 7.4 0.93 9.4 0.2 2.4 2 1 0 2 2 2 0 Histone acetyltransferase subunit NuA4 FlaC_arch PF05377.11 gi|145592139|ref|YP_001154141.1| - 8.7 6.8 8.3 6.8 7.2 1.8 2.5 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF1869 PF08956.10 gi|145592140|ref|YP_001154142.1| - 0.46 10.4 3.9 0.82 9.6 3.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1869) DHHA1 PF02272.19 gi|145592141|ref|YP_001154143.1| - 1.2e-07 32.3 0.1 2e-07 31.5 0.1 1.4 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|145592141|ref|YP_001154143.1| - 5.8e-06 26.5 0.0 1.3e-05 25.3 0.0 1.6 1 0 0 1 1 1 1 DHH family DUF2399 PF09664.10 gi|145592141|ref|YP_001154143.1| - 0.12 12.3 0.1 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function C-terminus (DUF2399) zf-CSL PF05207.13 gi|145592142|ref|YP_001154144.1| - 0.042 13.6 0.5 0.089 12.5 0.5 1.5 1 0 0 1 1 1 0 CSL zinc finger Radical_SAM PF04055.21 gi|145592144|ref|YP_001154146.1| - 1.2e-14 55.0 0.0 1.8e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145592144|ref|YP_001154146.1| - 4.6e-08 33.4 0.0 8.1e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145592144|ref|YP_001154146.1| - 0.00044 20.4 0.0 0.00091 19.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Kdo PF06293.14 gi|145592145|ref|YP_001154147.1| - 3.1e-12 46.3 0.0 4.2e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family RIO1 PF01163.22 gi|145592145|ref|YP_001154147.1| - 3.9e-12 46.1 0.0 5.4e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|145592145|ref|YP_001154147.1| - 7.3e-09 35.9 1.9 0.0013 18.7 0.2 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|145592145|ref|YP_001154147.1| - 5.6e-08 32.5 0.0 7.8e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|145592145|ref|YP_001154147.1| - 0.00015 21.2 0.0 0.00036 19.9 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase WaaY PF06176.11 gi|145592145|ref|YP_001154147.1| - 0.017 14.8 0.0 0.039 13.5 0.0 1.5 1 1 1 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|145592145|ref|YP_001154147.1| - 0.1 12.2 0.0 0.33 10.5 0.0 1.8 1 1 1 2 2 2 0 Choline/ethanolamine kinase Lsm_C PF14894.6 gi|145592146|ref|YP_001154148.1| - 2.6e-21 75.2 0.3 5.5e-21 74.1 0.3 1.5 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|145592146|ref|YP_001154148.1| - 3.9e-11 42.5 0.7 5.8e-11 41.9 0.7 1.5 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|145592146|ref|YP_001154148.1| - 6.1e-11 42.3 0.1 1.6e-10 41.0 0.1 1.7 1 1 0 1 1 1 1 Ataxin 2 SM domain LSM14 PF12701.7 gi|145592146|ref|YP_001154148.1| - 0.001 19.1 0.0 0.0087 16.1 0.0 2.1 1 1 0 1 1 1 1 Scd6-like Sm domain Helicase_C_2 PF13307.6 gi|145592147|ref|YP_001154149.1| - 2.3e-11 44.2 0.0 4e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|145592147|ref|YP_001154149.1| - 6.1e-06 26.0 0.0 9.6e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_16 PF13191.6 gi|145592147|ref|YP_001154149.1| - 0.045 14.1 0.1 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain DEAD PF00270.29 gi|145592147|ref|YP_001154149.1| - 0.11 12.3 0.0 3.1 7.5 0.0 2.4 3 0 0 3 3 3 0 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|145592147|ref|YP_001154149.1| - 0.17 10.6 0.0 0.28 9.9 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain EzrA PF06160.12 gi|145592148|ref|YP_001154150.1| - 0.017 13.4 0.1 0.034 12.3 0.0 1.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF4976 PF16347.5 gi|145592148|ref|YP_001154150.1| - 0.15 12.3 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4976) SurE PF01975.17 gi|145592149|ref|YP_001154151.1| - 1.9e-38 132.2 0.0 2.4e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE EamA PF00892.20 gi|145592150|ref|YP_001154152.1| - 1.7e-09 38.0 30.5 4e-08 33.5 12.1 2.5 2 1 0 2 2 2 2 EamA-like transporter family Oxidored_q4 PF00507.19 gi|145592151|ref|YP_001154153.1| - 6.5e-07 29.4 1.8 6.6e-07 29.4 0.1 1.7 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF4231 PF14015.6 gi|145592151|ref|YP_001154153.1| - 0.26 11.8 2.4 0.29 11.6 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CTP_synth_N PF06418.14 gi|229229025|ref|YP_001154154.2| - 9.9e-117 388.9 0.0 1.3e-116 388.6 0.0 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|229229025|ref|YP_001154154.2| - 2.3e-50 171.0 0.0 4.2e-50 170.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|229229025|ref|YP_001154154.2| - 1.7e-08 34.5 0.0 5.1e-07 29.7 0.0 2.5 2 1 0 2 2 2 1 Peptidase C26 CbiA PF01656.23 gi|229229025|ref|YP_001154154.2| - 0.0011 19.1 0.0 0.0015 18.6 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Dot_icm_IcmQ PF09475.10 gi|145592153|ref|YP_001154155.1| - 0.0034 16.9 0.1 0.0041 16.6 0.1 1.1 1 0 0 1 1 1 1 Dot/Icm secretion system protein (dot_icm_IcmQ) Rep_fac-A_C PF08646.10 gi|145592153|ref|YP_001154155.1| - 0.038 13.7 0.2 0.048 13.4 0.2 1.2 1 0 0 1 1 1 0 Replication factor-A C terminal domain Lactamase_B PF00753.27 gi|145592154|ref|YP_001154156.1| - 0.00057 19.9 0.4 0.00085 19.4 0.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily ADH_zinc_N PF00107.26 gi|145592154|ref|YP_001154156.1| - 0.01 15.8 0.1 1 9.4 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding dehydrogenase DUF123 PF01986.16 gi|145592155|ref|YP_001154157.1| - 4.6e-14 52.7 0.0 6.7e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 SIR2 PF02146.17 gi|145592156|ref|YP_001154158.1| - 5.2e-57 192.6 0.0 6.3e-57 192.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|145592156|ref|YP_001154158.1| - 0.012 15.4 0.0 0.075 12.8 0.0 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ADK_lid PF05191.14 gi|145592156|ref|YP_001154158.1| - 0.019 14.9 2.8 0.037 14.0 2.8 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.10 gi|145592156|ref|YP_001154158.1| - 0.028 14.5 0.8 0.052 13.7 0.8 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|145592156|ref|YP_001154158.1| - 0.038 14.0 0.1 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DNA_ligase_OB PF03120.16 gi|145592156|ref|YP_001154158.1| - 0.16 11.9 0.5 4.1 7.4 0.5 2.3 1 1 0 1 1 1 0 NAD-dependent DNA ligase OB-fold domain zinc_ribbon_4 PF13717.6 gi|145592156|ref|YP_001154158.1| - 0.31 11.0 3.1 0.79 9.7 3.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|145592156|ref|YP_001154158.1| - 0.47 10.3 3.8 1.5 8.6 3.8 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|145592156|ref|YP_001154158.1| - 1.1 9.2 4.7 1.5 8.8 0.4 2.6 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|145592156|ref|YP_001154158.1| - 1.3 9.0 3.8 2.5 8.1 0.1 1.9 1 1 1 2 2 2 0 Nudix N-terminal Lon_C PF05362.13 gi|145592157|ref|YP_001154159.1| - 1.2e-12 47.8 3.7 4e-12 46.1 3.7 1.8 1 1 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain ChlI PF13541.6 gi|145592157|ref|YP_001154159.1| - 0.0041 17.0 0.1 0.0075 16.1 0.1 1.4 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase RHH_8 PF17723.1 gi|145592157|ref|YP_001154159.1| - 0.049 13.8 0.1 0.093 12.9 0.1 1.3 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family CstA PF02554.14 gi|145592158|ref|YP_001154160.1| - 0.00056 18.9 0.9 0.00061 18.8 0.9 1.0 1 0 0 1 1 1 1 Carbon starvation protein CstA MerC PF03203.14 gi|145592158|ref|YP_001154160.1| - 0.033 14.7 2.0 0.052 14.0 2.1 1.3 1 1 0 1 1 1 0 MerC mercury resistance protein DUF4828 PF16110.5 gi|145592159|ref|YP_001154161.1| - 0.14 12.6 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4828) Resolvase PF00239.21 gi|145592160|ref|YP_001154162.1| - 1.6e-34 119.1 0.8 2.1e-34 118.7 0.8 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Sigma70_r4 PF04545.16 gi|145592160|ref|YP_001154162.1| - 0.0022 17.5 2.5 0.037 13.5 0.1 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 UPF0175 PF03683.13 gi|145592160|ref|YP_001154162.1| - 0.0029 17.3 0.0 0.0068 16.1 0.0 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) Complex1_LYR PF05347.15 gi|145592160|ref|YP_001154162.1| - 0.0049 16.9 0.9 0.015 15.4 0.1 2.3 2 0 0 2 2 2 1 Complex 1 protein (LYR family) DUF2802 PF10975.8 gi|145592160|ref|YP_001154162.1| - 0.021 15.0 0.0 0.048 13.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) GCP_N_terminal PF17681.1 gi|145592160|ref|YP_001154162.1| - 0.044 13.4 0.0 0.053 13.1 0.0 1.1 1 0 0 1 1 1 0 Gamma tubulin complex component N-terminal Lar_restr_allev PF14354.6 gi|145592160|ref|YP_001154162.1| - 0.045 14.1 0.9 0.11 12.9 0.9 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-ZPR1 PF03367.13 gi|145592160|ref|YP_001154162.1| - 0.1 12.5 1.1 0.21 11.4 1.1 1.5 1 0 0 1 1 1 0 ZPR1 zinc-finger domain Phage_antitermQ PF06530.12 gi|145592160|ref|YP_001154162.1| - 0.11 12.4 0.0 0.37 10.7 0.0 1.9 1 0 0 1 1 1 0 Phage antitermination protein Q TnsD PF15978.5 gi|145592160|ref|YP_001154162.1| - 0.14 11.1 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Tn7-like transposition protein D OrfB_Zn_ribbon PF07282.11 gi|145592160|ref|YP_001154162.1| - 2.8 7.9 4.4 3.9 7.5 2.0 2.4 2 1 0 2 2 2 0 Putative transposase DNA-binding domain Pribosyltran PF00156.27 gi|145592161|ref|YP_001154163.1| - 5.8e-19 68.2 0.1 8.2e-19 67.7 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|145592161|ref|YP_001154163.1| - 0.00054 19.5 0.0 0.00069 19.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Hydrolase_3 PF08282.12 gi|145592162|ref|YP_001154164.1| - 2.7e-27 96.1 0.0 6.2e-15 55.6 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|145592162|ref|YP_001154164.1| - 1.1e-08 34.9 0.2 1.8e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|145592162|ref|YP_001154164.1| - 0.0011 19.4 3.6 0.0062 17.0 0.0 2.9 1 1 2 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145592162|ref|YP_001154164.1| - 0.003 17.9 1.9 0.34 11.2 0.7 3.0 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|145592162|ref|YP_001154164.1| - 0.036 14.2 0.0 0.089 12.9 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|145592162|ref|YP_001154164.1| - 0.16 11.0 0.0 0.86 8.7 0.0 1.9 2 0 0 2 2 2 0 Trehalose-phosphatase Ras PF00071.22 gi|145592164|ref|YP_001154166.1| - 2.5e-07 30.5 0.2 9.5e-07 28.5 0.2 1.8 1 1 0 1 1 1 1 Ras family MMR_HSR1 PF01926.23 gi|145592164|ref|YP_001154166.1| - 8.3e-07 29.1 0.0 1.1e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase Arf PF00025.21 gi|145592164|ref|YP_001154166.1| - 2.7e-06 26.9 0.0 3.1e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|145592164|ref|YP_001154166.1| - 0.00047 19.9 0.0 0.00097 18.9 0.0 1.6 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|145592164|ref|YP_001154166.1| - 0.002 17.7 0.0 0.0055 16.3 0.0 1.7 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|145592164|ref|YP_001154166.1| - 0.0047 16.4 0.0 0.006 16.0 0.0 1.1 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Roc PF08477.13 gi|145592164|ref|YP_001154166.1| - 0.013 15.7 0.0 0.049 13.8 0.0 1.8 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Vma12 PF11712.8 gi|145592165|ref|YP_001154167.1| - 0.33 11.0 4.3 0.45 10.6 4.3 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Phage_holin_3_6 PF07332.11 gi|145592165|ref|YP_001154167.1| - 0.41 10.7 7.5 0.54 10.3 7.5 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Glycos_transf_4 PF00953.21 gi|145592166|ref|YP_001154168.1| - 8.8e-26 90.8 14.2 8.8e-26 90.8 14.2 2.0 3 0 0 3 3 3 1 Glycosyl transferase family 4 MtrE PF04206.12 gi|145592166|ref|YP_001154168.1| - 0.011 15.0 0.5 0.011 15.0 0.5 2.8 1 1 1 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit E Reticulon PF02453.17 gi|145592166|ref|YP_001154168.1| - 2.7 7.9 8.5 12 5.9 0.5 2.8 2 1 0 2 2 2 0 Reticulon DS PF01916.17 gi|145592167|ref|YP_001154169.1| - 1.8e-89 299.8 0.0 2e-89 299.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase CMAS PF02353.20 gi|145592168|ref|YP_001154170.1| - 4.4e-09 36.0 0.0 6.5e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DOT1 PF08123.13 gi|145592168|ref|YP_001154170.1| - 7.4e-07 28.9 0.0 9.9e-07 28.5 0.0 1.4 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_25 PF13649.6 gi|145592168|ref|YP_001154170.1| - 1.1e-05 26.0 0.0 2e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|145592168|ref|YP_001154170.1| - 9.8e-05 22.2 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|145592168|ref|YP_001154170.1| - 0.00031 20.5 0.0 0.0005 19.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|145592168|ref|YP_001154170.1| - 0.004 16.6 0.0 0.0056 16.2 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase Sigma70_r3 PF04539.16 gi|145592168|ref|YP_001154170.1| - 0.0045 17.1 0.1 0.011 15.8 0.1 1.6 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_47 PF16221.5 gi|145592168|ref|YP_001154170.1| - 0.0047 16.5 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 winged helix-turn-helix HTH_11 PF08279.12 gi|145592168|ref|YP_001154170.1| - 0.0054 16.7 0.2 0.011 15.7 0.2 1.5 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|145592168|ref|YP_001154170.1| - 0.0067 16.0 0.6 0.017 14.7 0.6 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|145592168|ref|YP_001154170.1| - 0.0072 15.9 0.5 0.013 15.1 0.1 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145592168|ref|YP_001154170.1| - 0.0095 15.8 0.4 0.019 14.8 0.4 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|145592168|ref|YP_001154170.1| - 0.01 15.8 0.5 0.022 14.7 0.1 1.8 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|145592168|ref|YP_001154170.1| - 0.012 15.3 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Methyltransf_32 PF13679.6 gi|145592168|ref|YP_001154170.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|145592168|ref|YP_001154170.1| - 0.018 15.0 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_20 PF12840.7 gi|145592168|ref|YP_001154170.1| - 0.022 14.8 0.1 0.045 13.8 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.12 gi|145592168|ref|YP_001154170.1| - 0.026 14.9 0.0 0.044 14.2 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein RrnaAD PF00398.20 gi|145592168|ref|YP_001154170.1| - 0.026 13.6 0.0 0.035 13.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase HTH_36 PF13730.6 gi|145592168|ref|YP_001154170.1| - 0.039 13.9 0.0 0.069 13.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|145592168|ref|YP_001154170.1| - 0.063 13.1 0.1 0.14 12.0 0.1 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|145592168|ref|YP_001154170.1| - 0.072 13.5 0.0 0.69 10.3 0.1 2.5 3 0 0 3 3 3 0 Transcriptional regulator HTH_27 PF13463.6 gi|145592168|ref|YP_001154170.1| - 0.073 13.6 1.0 0.54 10.8 0.2 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HD_4 PF13328.6 gi|145592168|ref|YP_001154170.1| - 0.085 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 HD domain HTH_28 PF13518.6 gi|145592168|ref|YP_001154170.1| - 0.087 13.0 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_2 PF00891.18 gi|145592168|ref|YP_001154170.1| - 0.099 11.9 0.1 0.39 10.0 0.1 1.9 2 1 1 3 3 3 0 O-methyltransferase domain MetW PF07021.12 gi|145592168|ref|YP_001154170.1| - 0.11 12.1 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|145592168|ref|YP_001154170.1| - 0.16 11.4 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RPA_C PF08784.11 gi|145592168|ref|YP_001154170.1| - 0.17 12.5 0.0 0.29 11.8 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal Ribosomal_S13_N PF08069.12 gi|145592169|ref|YP_001154171.1| - 5.2e-24 84.1 0.0 9.6e-24 83.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|145592169|ref|YP_001154171.1| - 1.2e-14 54.3 1.0 1.7e-14 53.8 1.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 HTHP PF11534.8 gi|145592169|ref|YP_001154171.1| - 0.012 16.0 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Hexameric tyrosine-coordinated heme protein (HTHP) DNase-RNase PF02577.14 gi|145592172|ref|YP_001154174.1| - 4.1e-34 117.0 0.2 5.1e-34 116.7 0.2 1.1 1 0 0 1 1 1 1 Bifunctional nuclease TFIIB PF00382.19 gi|145592173|ref|YP_001154175.1| - 6.2e-33 112.7 3.1 5.1e-18 64.9 0.5 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|145592173|ref|YP_001154175.1| - 8.4e-17 60.4 0.4 1.3e-16 59.8 0.4 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|145592173|ref|YP_001154175.1| - 4.8e-10 39.3 0.5 1.8e-05 24.5 0.3 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Cyclin_C PF02984.19 gi|145592173|ref|YP_001154175.1| - 4.2e-07 30.1 0.0 0.0024 18.0 0.0 2.4 2 0 0 2 2 2 2 Cyclin, C-terminal domain Desulfoferrod_N PF06397.12 gi|145592173|ref|YP_001154175.1| - 0.0012 18.4 5.1 0.0019 17.8 4.0 1.9 1 1 1 2 2 2 1 Desulfoferrodoxin, N-terminal domain HTH_11 PF08279.12 gi|145592173|ref|YP_001154175.1| - 0.0015 18.5 0.0 2.6 8.1 0.0 2.8 2 0 0 2 2 2 2 HTH domain TFIIB_C_1 PF18542.1 gi|145592173|ref|YP_001154175.1| - 0.0023 17.9 2.3 0.0023 17.9 2.3 2.1 2 0 0 2 2 2 1 Transcription factor IIB C-terminal module 1 Ribosomal_S27e PF01667.17 gi|145592173|ref|YP_001154175.1| - 0.008 15.9 0.6 0.014 15.1 0.6 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 HTH_AsnC-type PF13404.6 gi|145592173|ref|YP_001154175.1| - 0.017 15.0 0.1 1.3 9.0 0.0 2.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Zn_Tnp_IS91 PF14319.6 gi|145592173|ref|YP_001154175.1| - 0.043 13.8 0.0 0.1 12.6 0.0 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain HTH_Tnp_ISL3 PF13542.6 gi|145592173|ref|YP_001154175.1| - 0.05 13.0 0.8 3.2 7.2 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 Prim_Zn_Ribbon PF08273.12 gi|145592173|ref|YP_001154175.1| - 0.061 13.6 0.9 0.13 12.6 0.9 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Lar_restr_allev PF14354.6 gi|145592173|ref|YP_001154175.1| - 0.085 13.2 0.1 0.19 12.1 0.1 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4 PF04545.16 gi|145592173|ref|YP_001154175.1| - 0.097 12.2 0.8 3.1 7.4 0.0 3.2 3 1 0 3 3 3 0 Sigma-70, region 4 DUF2318 PF10080.9 gi|145592173|ref|YP_001154175.1| - 0.1 12.7 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) A2L_zn_ribbon PF08792.10 gi|145592173|ref|YP_001154175.1| - 0.15 11.8 1.5 0.28 10.9 1.5 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Ribosomal_L13e PF01294.18 gi|145592177|ref|YP_001154179.1| - 8e-10 38.9 0.8 2e-09 37.6 0.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L13e Ribosomal_L15e PF00827.17 gi|145592177|ref|YP_001154179.1| - 0.00012 21.9 2.4 0.00013 21.7 1.7 1.4 1 1 0 1 1 1 1 Ribosomal L15 HTH_19 PF12844.7 gi|145592178|ref|YP_001154180.1| - 4.3e-08 33.1 0.0 1e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|145592178|ref|YP_001154180.1| - 1.7e-07 31.1 0.0 3.9e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|145592178|ref|YP_001154180.1| - 5.9e-07 29.7 0.0 1.4e-06 28.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|145592178|ref|YP_001154180.1| - 0.0036 17.0 0.1 0.009 15.8 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MscS_porin PF12795.7 gi|145592179|ref|YP_001154181.1| - 5.2e-06 26.2 48.1 0.0016 18.0 23.6 2.2 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|145592179|ref|YP_001154181.1| - 7.9e-06 25.9 29.4 0.0074 16.3 3.6 4.2 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) Mod_r PF07200.13 gi|145592179|ref|YP_001154181.1| - 8.7e-05 22.7 40.4 0.003 17.7 14.2 4.1 2 2 2 4 4 4 2 Modifier of rudimentary (Mod(r)) protein IFT57 PF10498.9 gi|145592179|ref|YP_001154181.1| - 0.0001 21.4 34.0 0.00075 18.6 14.3 2.4 1 1 0 2 2 2 2 Intra-flagellar transport protein 57 DUF948 PF06103.11 gi|145592179|ref|YP_001154181.1| - 0.0002 21.5 17.5 0.013 15.8 1.9 3.7 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) YkyA PF10368.9 gi|145592179|ref|YP_001154181.1| - 0.001 18.8 5.7 0.001 18.8 5.7 3.4 1 1 2 3 3 3 1 Putative cell-wall binding lipoprotein APG6_N PF17675.1 gi|145592179|ref|YP_001154181.1| - 0.0018 18.8 24.7 0.0018 18.8 24.7 3.8 2 2 1 3 3 3 1 Apg6 coiled-coil region DUF4201 PF13870.6 gi|145592179|ref|YP_001154181.1| - 0.0028 17.4 47.1 0.086 12.6 12.3 3.8 2 2 1 3 3 3 1 Domain of unknown function (DUF4201) PI3K_P85_iSH2 PF16454.5 gi|145592179|ref|YP_001154181.1| - 0.0038 16.8 37.3 0.02 14.5 13.6 3.6 1 1 1 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain EzrA PF06160.12 gi|145592179|ref|YP_001154181.1| - 0.0042 15.3 10.4 0.0042 15.3 10.4 2.8 2 1 0 2 2 2 1 Septation ring formation regulator, EzrA Tup_N PF08581.10 gi|145592179|ref|YP_001154181.1| - 0.0047 17.2 9.4 0.0047 17.2 9.4 3.8 2 2 2 4 4 4 1 Tup N-terminal Spc7 PF08317.11 gi|145592179|ref|YP_001154181.1| - 0.0074 15.2 45.0 0.2 10.5 9.8 2.5 1 1 0 2 2 2 2 Spc7 kinetochore protein Sec34 PF04136.15 gi|145592179|ref|YP_001154181.1| - 0.0077 16.1 28.3 0.1 12.5 6.6 4.4 1 1 2 4 4 4 2 Sec34-like family Fez1 PF06818.15 gi|145592179|ref|YP_001154181.1| - 0.0096 16.4 35.6 0.16 12.4 5.7 2.8 1 1 0 2 2 2 2 Fez1 Laminin_II PF06009.12 gi|145592179|ref|YP_001154181.1| - 0.0097 15.9 34.1 0.024 14.7 6.7 3.2 2 1 1 3 3 3 2 Laminin Domain II Nmad5 PF18757.1 gi|145592179|ref|YP_001154181.1| - 0.013 15.7 2.4 0.013 15.7 2.4 4.0 1 1 3 4 4 4 0 Nucleotide modification associated domain 5 TPR_MLP1_2 PF07926.12 gi|145592179|ref|YP_001154181.1| - 0.021 14.9 49.6 0.053 13.6 5.0 4.9 2 2 3 5 5 4 0 TPR/MLP1/MLP2-like protein FPP PF05911.11 gi|145592179|ref|YP_001154181.1| - 0.026 12.7 40.5 0.012 13.9 24.5 2.0 1 1 0 2 2 2 0 Filament-like plant protein, long coiled-coil SKA2 PF16740.5 gi|145592179|ref|YP_001154181.1| - 0.033 14.0 34.8 0.055 13.3 4.0 4.9 2 2 3 5 5 5 0 Spindle and kinetochore-associated protein 2 GAS PF13851.6 gi|145592179|ref|YP_001154181.1| - 0.037 13.4 49.6 0.4 10.0 30.0 2.5 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding MCPsignal PF00015.21 gi|145592179|ref|YP_001154181.1| - 0.043 13.6 13.2 0.38 10.5 1.8 2.7 2 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain zf-C4H2 PF10146.9 gi|145592179|ref|YP_001154181.1| - 0.075 13.3 35.4 0.026 14.8 19.8 2.2 1 1 1 2 2 2 0 Zinc finger-containing protein FlaC_arch PF05377.11 gi|145592179|ref|YP_001154181.1| - 0.082 13.3 24.6 1.1 9.8 0.8 5.3 2 2 2 4 4 4 0 Flagella accessory protein C (FlaC) DUF2746 PF10874.8 gi|145592179|ref|YP_001154181.1| - 0.09 13.2 9.0 9.3 6.7 0.1 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2746) MtrG PF04210.13 gi|145592179|ref|YP_001154181.1| - 0.12 12.3 0.2 0.12 12.3 0.2 3.5 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G TMPIT PF07851.13 gi|145592179|ref|YP_001154181.1| - 0.12 11.6 29.2 0.24 10.6 3.7 3.0 2 1 1 3 3 3 0 TMPIT-like protein JmjN PF02375.17 gi|145592179|ref|YP_001154181.1| - 0.13 12.3 1.5 0.17 11.8 0.1 1.9 2 0 0 2 2 1 0 jmjN domain MtrB PF05440.12 gi|145592179|ref|YP_001154181.1| - 0.16 12.4 5.1 13 6.3 0.1 3.9 2 2 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B YabA PF06156.13 gi|145592179|ref|YP_001154181.1| - 0.19 12.4 37.3 2.8 8.6 4.3 4.3 2 2 2 4 4 4 0 Initiation control protein YabA OmpH PF03938.14 gi|145592179|ref|YP_001154181.1| - 0.21 11.9 44.8 0.29 11.5 19.0 3.4 2 1 2 4 4 4 0 Outer membrane protein (OmpH-like) NPV_P10 PF05531.12 gi|145592179|ref|YP_001154181.1| - 0.23 12.0 23.1 0.083 13.4 5.7 4.4 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein HOOK PF05622.12 gi|145592179|ref|YP_001154181.1| - 0.31 9.2 40.8 0.14 10.3 7.2 2.1 2 0 0 2 2 2 0 HOOK protein Golgin_A5 PF09787.9 gi|145592179|ref|YP_001154181.1| - 0.31 10.5 42.0 0.57 9.6 24.7 2.3 1 1 0 2 2 2 0 Golgin subfamily A member 5 FUSC PF04632.12 gi|145592179|ref|YP_001154181.1| - 0.33 9.4 11.0 4 5.9 7.0 2.1 2 0 0 2 2 2 0 Fusaric acid resistance protein family eIF3_N PF09440.10 gi|145592179|ref|YP_001154181.1| - 0.33 11.4 27.7 0.33 11.4 3.4 4.8 2 2 3 5 5 5 0 eIF3 subunit 6 N terminal domain TACC_C PF05010.14 gi|145592179|ref|YP_001154181.1| - 0.35 10.6 38.2 2.3 8.0 6.1 3.0 1 1 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF5082 PF16888.5 gi|145592179|ref|YP_001154181.1| - 0.37 11.1 34.5 0.53 10.6 14.4 3.6 2 2 1 3 3 3 0 Domain of unknown function (DUF5082) Seryl_tRNA_N PF02403.22 gi|145592179|ref|YP_001154181.1| - 0.4 10.9 46.6 0.1 12.8 15.5 4.8 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain T3SSipB PF16535.5 gi|145592179|ref|YP_001154181.1| - 0.4 11.1 18.4 2 8.9 13.8 2.3 2 0 0 2 2 2 0 Type III cell invasion protein SipB Filament PF00038.21 gi|145592179|ref|YP_001154181.1| - 0.41 10.2 40.3 1 8.8 8.9 2.7 1 1 0 1 1 1 0 Intermediate filament protein Prp19 PF08606.11 gi|145592179|ref|YP_001154181.1| - 0.43 10.6 12.9 1.4 9.0 1.4 4.0 3 1 1 4 4 2 0 Prp19/Pso4-like Atg14 PF10186.9 gi|145592179|ref|YP_001154181.1| - 0.47 9.5 48.3 0.65 9.0 12.2 2.9 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Rab5-bind PF09311.11 gi|145592179|ref|YP_001154181.1| - 0.49 9.7 35.3 1.1 8.6 2.9 3.3 1 1 2 3 3 3 0 Rabaptin-like protein DUF3450 PF11932.8 gi|145592179|ref|YP_001154181.1| - 0.51 9.6 41.6 0.078 12.3 11.3 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF3450) COG2 PF06148.11 gi|145592179|ref|YP_001154181.1| - 0.58 10.2 30.6 0.54 10.4 2.3 4.1 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_TATA_bd PF12325.8 gi|145592179|ref|YP_001154181.1| - 0.62 10.3 41.5 0.17 12.1 5.5 4.3 2 1 2 4 4 4 0 TATA element modulatory factor 1 TATA binding DUF724 PF05266.14 gi|145592179|ref|YP_001154181.1| - 0.76 9.6 38.6 0.11 12.3 6.4 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF724) PI_PP_I PF18363.1 gi|145592179|ref|YP_001154181.1| - 0.85 9.8 12.1 0.18 12.0 4.1 3.4 1 1 2 4 4 4 0 Phosphoinositide phosphatase insertion domain CENP-F_leu_zip PF10473.9 gi|145592179|ref|YP_001154181.1| - 0.86 9.6 46.8 0.28 11.2 24.5 3.5 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GP41 PF00517.17 gi|145592179|ref|YP_001154181.1| - 1.1 9.1 9.9 0.74 9.7 0.8 2.9 2 2 1 3 3 2 0 Retroviral envelope protein AKNA PF12443.8 gi|145592179|ref|YP_001154181.1| - 1.6 9.5 21.9 0.73 10.5 0.6 4.8 2 2 2 4 4 4 0 AT-hook-containing transcription factor LPP PF04728.13 gi|145592179|ref|YP_001154181.1| - 2 8.9 18.3 2.3 8.7 0.3 4.7 2 1 1 3 3 2 0 Lipoprotein leucine-zipper APG17 PF04108.12 gi|145592179|ref|YP_001154181.1| - 2.3 7.3 29.2 1.8 7.6 20.5 2.9 1 1 1 2 2 2 0 Autophagy protein Apg17 V_ATPase_I PF01496.19 gi|145592179|ref|YP_001154181.1| - 2.5 5.9 28.8 0.3 8.9 16.4 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DASH_Duo1 PF08651.10 gi|145592179|ref|YP_001154181.1| - 2.6 7.9 23.6 1 9.1 2.1 4.7 3 2 3 6 6 5 0 DASH complex subunit Duo1 WXG100 PF06013.12 gi|145592179|ref|YP_001154181.1| - 2.9 8.2 12.2 16 5.8 2.6 4.4 2 2 0 2 2 2 0 Proteins of 100 residues with WXG Fib_alpha PF08702.10 gi|145592179|ref|YP_001154181.1| - 3.3 7.9 32.8 2.9 8.1 10.8 2.9 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family AAA_13 PF13166.6 gi|145592179|ref|YP_001154181.1| - 3.6 6.1 36.1 23 3.5 33.9 2.2 1 1 0 1 1 1 0 AAA domain DUF4239 PF14023.6 gi|145592179|ref|YP_001154181.1| - 3.6 7.3 14.3 0.26 11.0 4.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4239) Lebercilin PF15619.6 gi|145592179|ref|YP_001154181.1| - 4.4 6.9 47.9 3.2 7.4 11.5 2.3 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease CENP-H PF05837.12 gi|145592179|ref|YP_001154181.1| - 4.7 7.6 42.7 2.1 8.8 8.4 4.0 2 2 1 3 3 3 0 Centromere protein H (CENP-H) HMMR_C PF15908.5 gi|145592179|ref|YP_001154181.1| - 4.8 7.4 31.8 4.7 7.5 6.3 3.3 2 1 0 3 3 3 0 Hyaluronan mediated motility receptor C-terminal TFA2_Winged_2 PF18121.1 gi|145592179|ref|YP_001154181.1| - 5.2 6.8 8.3 7.7 6.3 0.1 3.6 3 1 0 3 3 3 0 TFA2 Winged helix domain 2 ApoO PF09769.9 gi|145592179|ref|YP_001154181.1| - 5.8 6.9 7.4 16 5.5 0.6 3.9 2 2 2 4 4 4 0 Apolipoprotein O DUF2937 PF11157.8 gi|145592179|ref|YP_001154181.1| - 6.2 6.5 8.7 0.55 9.9 2.9 2.2 2 2 0 2 2 2 0 Protein of unknown function (DUF2937) Flagellin_C PF00700.21 gi|145592179|ref|YP_001154181.1| - 6.4 7.2 17.4 2.3 8.6 1.0 4.1 2 2 2 4 4 4 0 Bacterial flagellin C-terminal helical region Occludin_ELL PF07303.13 gi|145592179|ref|YP_001154181.1| - 6.5 7.5 29.9 0.69 10.7 5.8 4.4 1 1 5 6 6 5 0 Occludin homology domain DUF4795 PF16043.5 gi|145592179|ref|YP_001154181.1| - 6.8 6.2 38.6 5.2 6.6 8.4 2.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4795) FapA PF03961.13 gi|145592179|ref|YP_001154181.1| - 6.8 5.2 40.7 1.3 7.6 7.6 3.1 2 1 1 3 3 3 0 Flagellar Assembly Protein A Laminin_I PF06008.14 gi|145592179|ref|YP_001154181.1| - 8.9 5.9 39.0 1.8 8.2 9.0 2.7 2 1 0 2 2 2 0 Laminin Domain I Exonuc_VII_L PF02601.15 gi|145592179|ref|YP_001154181.1| - 9.1 5.7 36.3 0.21 11.1 7.9 2.2 1 1 1 2 2 2 0 Exonuclease VII, large subunit Med10 PF09748.9 gi|145592179|ref|YP_001154181.1| - 9.5 6.2 14.3 2.7 8.0 3.4 3.6 2 2 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex Tweety PF04906.13 gi|145592179|ref|YP_001154181.1| - 10 4.7 17.8 0.35 9.5 4.3 2.5 2 1 0 2 2 2 0 Tweety Tektin PF03148.14 gi|145592179|ref|YP_001154181.1| - 10 4.8 40.6 0.18 10.5 19.3 3.4 2 2 1 3 3 3 0 Tektin family DUF373 PF04123.13 gi|145592180|ref|YP_001154182.1| - 4.8e-69 233.4 10.8 7e-69 232.8 10.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF2070 PF09843.9 gi|145592180|ref|YP_001154182.1| - 0.0029 16.0 19.2 0.0038 15.6 19.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) UPF0020 PF01170.18 gi|145592181|ref|YP_001154183.1| - 1.8e-09 37.5 0.0 1.3e-06 28.3 0.0 2.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|145592181|ref|YP_001154183.1| - 0.012 15.3 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase N6_N4_Mtase PF01555.18 gi|145592181|ref|YP_001154183.1| - 0.022 14.4 0.0 0.22 11.2 0.0 2.3 2 1 1 3 3 3 0 DNA methylase Methyltransf_11 PF08241.12 gi|145592181|ref|YP_001154183.1| - 0.029 15.0 0.0 0.16 12.7 0.0 2.1 1 1 0 1 1 1 0 Methyltransferase domain RNA_binding PF01877.17 gi|145592182|ref|YP_001154184.1| - 9.3e-16 58.2 0.1 1.1e-15 57.9 0.1 1.1 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.6 gi|145592183|ref|YP_001154185.1| - 2.1e-16 60.6 0.0 2.7e-16 60.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|145592183|ref|YP_001154185.1| - 1e-15 58.4 0.0 1.3e-15 58.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|145592183|ref|YP_001154185.1| - 7.3e-07 29.4 0.2 1.8e-06 28.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|145592183|ref|YP_001154185.1| - 9.9e-05 22.5 0.0 0.00012 22.2 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase Cytidylate_kin2 PF13189.6 gi|145592183|ref|YP_001154185.1| - 0.0017 18.5 0.0 0.027 14.6 0.0 2.2 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_5 PF07728.14 gi|145592183|ref|YP_001154185.1| - 0.0024 17.9 0.1 0.0067 16.4 0.0 1.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|145592183|ref|YP_001154185.1| - 0.0031 17.8 0.0 0.0047 17.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|145592183|ref|YP_001154185.1| - 0.0036 17.0 0.1 1.8 8.2 0.0 2.2 2 0 0 2 2 2 2 Thymidylate kinase APS_kinase PF01583.20 gi|145592183|ref|YP_001154185.1| - 0.012 15.5 0.1 0.013 15.4 0.1 1.3 1 1 0 1 1 1 0 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|145592183|ref|YP_001154185.1| - 0.013 14.8 0.0 0.027 13.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|145592183|ref|YP_001154185.1| - 0.019 15.2 0.1 0.036 14.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain ATP_bind_2 PF03668.15 gi|145592183|ref|YP_001154185.1| - 0.023 14.0 0.5 0.15 11.3 0.5 1.9 1 1 0 1 1 1 0 P-loop ATPase protein family dNK PF01712.19 gi|145592183|ref|YP_001154185.1| - 0.038 13.8 0.1 2.7 7.8 0.0 2.1 2 0 0 2 2 2 0 Deoxynucleoside kinase AAA_16 PF13191.6 gi|145592183|ref|YP_001154185.1| - 0.048 14.0 0.5 0.064 13.6 0.5 1.6 1 1 0 1 1 1 0 AAA ATPase domain Cytidylate_kin PF02224.18 gi|145592183|ref|YP_001154185.1| - 0.051 13.3 1.5 0.14 11.9 0.1 1.9 1 1 0 2 2 2 0 Cytidylate kinase AAA PF00004.29 gi|145592183|ref|YP_001154185.1| - 0.082 13.3 0.2 0.13 12.7 0.2 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CoaE PF01121.20 gi|145592183|ref|YP_001154185.1| - 0.11 12.1 0.0 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Dephospho-CoA kinase ABC_tran PF00005.27 gi|145592183|ref|YP_001154185.1| - 0.11 13.0 0.1 0.24 11.9 0.1 1.5 1 1 0 1 1 1 0 ABC transporter NB-ARC PF00931.22 gi|145592183|ref|YP_001154185.1| - 0.13 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.18 gi|145592183|ref|YP_001154185.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.10 gi|145592183|ref|YP_001154185.1| - 0.15 11.5 0.0 0.29 10.5 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_30 PF13604.6 gi|145592183|ref|YP_001154185.1| - 0.17 11.5 0.7 0.24 11.1 0.7 1.7 1 1 0 1 1 1 0 AAA domain TRM PF02005.16 gi|145592184|ref|YP_001154186.1| - 1.6e-75 254.6 0.0 4e-75 253.4 0.0 1.6 1 1 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.6 gi|145592184|ref|YP_001154186.1| - 9.4e-06 25.5 0.0 0.00013 21.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|145592184|ref|YP_001154186.1| - 0.00031 20.6 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.9 gi|145592184|ref|YP_001154186.1| - 0.00035 20.4 0.0 0.00051 19.8 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase MTS PF05175.14 gi|145592184|ref|YP_001154186.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|145592184|ref|YP_001154186.1| - 0.0058 17.3 0.0 0.021 15.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|145592184|ref|YP_001154186.1| - 0.0062 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 HTH_3 PF01381.22 gi|145592185|ref|YP_001154187.1| - 5e-09 36.1 0.2 1.3e-08 34.8 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|145592185|ref|YP_001154187.1| - 3.6e-06 27.2 0.9 2.7e-05 24.4 0.3 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|145592185|ref|YP_001154187.1| - 0.00011 22.2 0.1 0.0002 21.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|145592185|ref|YP_001154187.1| - 0.0014 18.6 0.0 0.0032 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|145592185|ref|YP_001154187.1| - 0.0032 17.4 0.1 0.014 15.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain GP3_package PF16677.5 gi|145592185|ref|YP_001154187.1| - 0.0067 16.6 0.0 0.087 13.0 0.0 2.2 2 0 0 2 2 2 1 DNA-packaging protein gp3 HTH_17 PF12728.7 gi|145592185|ref|YP_001154187.1| - 0.012 15.8 0.1 0.59 10.4 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_22 PF13309.6 gi|145592185|ref|YP_001154187.1| - 0.012 15.6 0.1 0.051 13.6 0.0 2.1 2 0 0 2 2 2 0 HTH domain MqsA_antitoxin PF15731.5 gi|145592185|ref|YP_001154187.1| - 0.045 13.9 0.2 0.12 12.5 0.0 1.9 2 1 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_23 PF13384.6 gi|145592185|ref|YP_001154187.1| - 0.051 13.4 0.0 0.34 10.8 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.6 gi|145592185|ref|YP_001154187.1| - 0.053 13.5 0.1 0.77 9.8 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_36 PF13730.6 gi|145592185|ref|YP_001154187.1| - 0.069 13.1 0.0 0.4 10.7 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain PUA PF01472.20 gi|145592186|ref|YP_001154188.1| - 4e-20 71.5 0.7 8.6e-20 70.5 0.7 1.6 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.10 gi|145592186|ref|YP_001154188.1| - 4.1e-06 27.0 0.5 1.4e-05 25.2 0.2 2.1 2 1 0 2 2 2 1 Domain of unknown function (DUF1947) UPF0113 PF03657.13 gi|145592186|ref|YP_001154188.1| - 1.5e-05 25.1 0.1 2.4e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain Pre-PUA PF17832.1 gi|145592186|ref|YP_001154188.1| - 0.00079 20.1 0.0 0.0022 18.6 0.0 1.8 2 0 0 2 2 2 1 Pre-PUA-like domain PUA_3 PF17785.1 gi|145592186|ref|YP_001154188.1| - 0.043 13.6 0.6 0.16 11.8 0.1 2.2 2 1 0 2 2 2 0 PUA-like domain GCD14_N PF14801.6 gi|145592186|ref|YP_001154188.1| - 0.053 13.4 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term RIO1 PF01163.22 gi|145592187|ref|YP_001154189.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 RIO1 family Cas9_a PF18470.1 gi|145592187|ref|YP_001154189.1| - 0.062 12.8 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Cas9 alpha-helical lobe domain APH PF01636.23 gi|145592187|ref|YP_001154189.1| - 0.069 13.1 0.0 11 5.9 0.0 2.1 1 1 1 2 2 2 0 Phosphotransferase enzyme family Auto_anti-p27 PF06677.12 gi|145592188|ref|YP_001154190.1| - 5.9e-11 42.3 0.6 9.6e-11 41.7 0.6 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|145592188|ref|YP_001154190.1| - 0.00028 20.3 1.9 0.00053 19.5 1.9 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|145592188|ref|YP_001154190.1| - 0.0013 18.6 0.2 0.0023 17.8 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|145592188|ref|YP_001154190.1| - 0.0026 17.6 0.9 0.0038 17.1 0.9 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|145592188|ref|YP_001154190.1| - 0.0032 17.4 0.3 0.0049 16.8 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|145592188|ref|YP_001154190.1| - 0.0094 15.9 2.4 0.022 14.7 0.4 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DZR PF12773.7 gi|145592188|ref|YP_001154190.1| - 0.01 15.8 0.2 0.018 15.1 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|145592188|ref|YP_001154190.1| - 0.011 15.1 1.1 0.023 14.1 1.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain CpXC PF14353.6 gi|145592188|ref|YP_001154190.1| - 0.011 15.7 0.0 0.013 15.5 0.0 1.2 1 0 0 1 1 1 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|145592188|ref|YP_001154190.1| - 0.021 14.9 0.5 1.8 8.8 0.0 2.6 2 0 0 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|145592188|ref|YP_001154190.1| - 0.047 13.7 3.7 0.21 11.7 3.7 2.2 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 gi|145592188|ref|YP_001154190.1| - 0.058 13.3 0.2 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RRN7 PF11781.8 gi|145592188|ref|YP_001154190.1| - 0.076 12.7 0.5 0.12 12.1 0.5 1.2 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Sgf11 PF08209.11 gi|145592188|ref|YP_001154190.1| - 0.14 11.7 1.2 1.1 8.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.6 gi|145592188|ref|YP_001154190.1| - 0.16 11.7 1.6 5.3 6.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|145592188|ref|YP_001154190.1| - 0.28 11.6 2.4 4.9 7.6 0.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 PMT PF02366.18 gi|145592189|ref|YP_001154191.1| - 1.5e-12 47.6 23.6 5.6e-11 42.5 20.9 3.2 2 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT_2 PF13231.6 gi|145592189|ref|YP_001154191.1| - 4.7e-09 36.6 15.9 4.7e-09 36.6 15.9 2.4 3 1 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase GT87 PF09594.10 gi|145592189|ref|YP_001154191.1| - 4.7e-05 23.2 30.3 4.7e-05 23.2 30.3 1.8 2 1 0 2 2 2 1 Glycosyltransferase family 87 PMT_4TMC PF16192.5 gi|145592189|ref|YP_001154191.1| - 0.047 13.3 0.0 0.047 13.3 0.0 2.8 3 2 1 4 4 4 0 C-terminal four TMM region of protein-O-mannosyltransferase tRNA-synt_1 PF00133.22 gi|145592190|ref|YP_001154192.1| - 8.9e-166 552.6 1.3 1.1e-165 552.3 1.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|145592190|ref|YP_001154192.1| - 4.8e-31 107.8 0.5 9.8e-31 106.8 0.5 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|145592190|ref|YP_001154192.1| - 2.6e-25 89.0 0.1 4.1e-09 35.7 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|145592190|ref|YP_001154192.1| - 8.7e-07 28.6 0.0 0.0014 18.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|145592190|ref|YP_001154192.1| - 6.6e-06 25.8 0.0 1.9e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|145592190|ref|YP_001154192.1| - 3.8e-05 22.8 0.0 0.00011 21.2 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) HscB_4_cys PF18256.1 gi|145592190|ref|YP_001154192.1| - 0.59 10.0 4.9 1.5 8.7 0.5 2.4 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Mnd1 PF03962.15 gi|145592191|ref|YP_001154193.1| - 0.013 15.8 1.9 0.023 15.0 0.2 2.0 2 0 0 2 2 2 0 Mnd1 HTH domain HTH_27 PF13463.6 gi|145592191|ref|YP_001154193.1| - 0.068 13.7 0.4 0.17 12.4 0.3 1.7 1 1 1 2 2 2 0 Winged helix DNA-binding domain CbiA PF01656.23 gi|145592192|ref|YP_001154194.1| - 3.5e-07 30.3 0.0 4.4e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|145592192|ref|YP_001154194.1| - 6e-05 23.0 1.5 0.00013 21.9 1.5 1.8 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|145592192|ref|YP_001154194.1| - 0.0052 16.3 0.7 0.0094 15.4 0.7 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_24 PF13479.6 gi|145592192|ref|YP_001154194.1| - 0.012 15.4 0.0 0.029 14.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145592192|ref|YP_001154194.1| - 0.1 12.2 2.3 0.37 10.3 0.5 2.0 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|145592192|ref|YP_001154194.1| - 0.13 11.7 0.1 0.78 9.2 0.1 1.9 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|145592192|ref|YP_001154194.1| - 0.16 11.3 0.9 0.22 10.8 0.3 1.5 2 0 0 2 2 2 0 ATPase MipZ DUF349 PF03993.12 gi|145592194|ref|YP_001154196.1| - 0.0028 17.9 4.6 0.14 12.5 0.1 2.2 2 0 0 2 2 2 2 Domain of Unknown Function (DUF349) ApoLp-III PF07464.11 gi|145592194|ref|YP_001154196.1| - 0.014 15.5 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) AAA_13 PF13166.6 gi|145592194|ref|YP_001154196.1| - 0.053 12.2 0.7 0.063 11.9 0.7 1.0 1 0 0 1 1 1 0 AAA domain Unstab_antitox PF09720.10 gi|145592194|ref|YP_001154196.1| - 0.084 12.9 5.6 1 9.5 0.1 2.5 2 0 0 2 2 2 0 Putative addiction module component Radical_SAM_C PF16199.5 gi|145592194|ref|YP_001154196.1| - 0.094 12.8 0.1 0.57 10.2 0.0 2.2 1 1 2 3 3 3 0 Radical_SAM C-terminal domain CobN-Mg_chel PF02514.16 gi|145592194|ref|YP_001154196.1| - 0.1 10.3 1.4 0.13 9.9 1.4 1.0 1 0 0 1 1 1 0 CobN/Magnesium Chelatase DUF1664 PF07889.12 gi|145592194|ref|YP_001154196.1| - 0.22 11.6 1.5 2.6 8.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Mer2 PF09074.10 gi|145592194|ref|YP_001154196.1| - 0.94 9.3 4.6 1.2 8.9 1.3 2.0 1 1 1 2 2 2 0 Mer2 SlyX PF04102.12 gi|145592194|ref|YP_001154196.1| - 2.3 8.9 6.8 8 7.2 2.2 2.8 1 1 2 3 3 3 0 SlyX AAA_16 PF13191.6 gi|145592195|ref|YP_001154197.1| - 0.0074 16.7 0.2 0.021 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|145592195|ref|YP_001154197.1| - 0.043 13.4 0.2 0.16 11.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.26 gi|145592195|ref|YP_001154197.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain DAP3 PF10236.9 gi|145592195|ref|YP_001154197.1| - 0.12 11.6 0.1 0.2 10.8 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_7 PF12775.7 gi|145592195|ref|YP_001154197.1| - 0.16 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region 4HBT PF03061.22 gi|145592197|ref|YP_001154199.1| - 3.6e-17 62.5 5.9 3.7e-09 36.8 0.3 2.2 2 0 0 2 2 2 2 Thioesterase superfamily MaoC_dehydratas PF01575.19 gi|145592197|ref|YP_001154199.1| - 0.0042 16.6 0.4 0.014 14.9 0.0 2.0 2 0 0 2 2 2 1 MaoC like domain PPS_PS PF02006.16 gi|145592198|ref|YP_001154200.1| - 1.3e-78 262.5 1.3 1.6e-78 262.3 1.3 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase DUF5053 PF16476.5 gi|145592198|ref|YP_001154200.1| - 0.063 13.0 0.0 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5053) DUF4525 PF15027.6 gi|145592198|ref|YP_001154200.1| - 0.066 12.9 0.3 0.12 12.1 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4525) TPP_enzyme_M PF00205.22 gi|145592198|ref|YP_001154200.1| - 0.27 11.0 2.5 0.46 10.2 0.8 2.0 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain ApbA_C PF08546.11 gi|145592200|ref|YP_001154202.1| - 7.7e-33 113.4 0.1 1.1e-32 112.9 0.1 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|145592200|ref|YP_001154202.1| - 2.5e-13 49.9 0.1 6.2e-12 45.4 0.1 2.3 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pantoate_transf PF02548.15 gi|145592201|ref|YP_001154203.1| - 9.9e-108 359.4 1.6 1.2e-107 359.1 1.6 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|145592201|ref|YP_001154203.1| - 7.5e-09 35.4 0.5 1.6e-08 34.3 0.1 1.7 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase Robl_LC7 PF03259.17 gi|145592201|ref|YP_001154203.1| - 0.00013 21.6 0.1 0.0021 17.8 0.0 2.2 2 0 0 2 2 2 1 Roadblock/LC7 domain Ribosomal_L5e PF17144.4 gi|145592203|ref|YP_001154205.1| - 1.9e-32 112.5 1.1 2.1e-19 70.1 0.4 2.4 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|145592203|ref|YP_001154205.1| - 1.9e-13 51.1 0.3 3.4e-13 50.3 0.3 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|145592203|ref|YP_001154205.1| - 2.9e-09 37.3 0.1 4.7e-09 36.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EF-1_beta_acid PF10587.9 gi|145592203|ref|YP_001154205.1| - 0.088 13.3 1.5 0.57 10.7 0.2 2.4 1 1 1 2 2 2 0 Eukaryotic elongation factor 1 beta central acidic region Ribosomal_L19e PF01280.20 gi|145592204|ref|YP_001154206.1| - 1.2e-46 158.3 5.0 1.4e-46 158.2 5.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e PG_binding_1 PF01471.18 gi|145592204|ref|YP_001154206.1| - 0.14 12.4 0.0 0.35 11.1 0.0 1.7 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Ribosomal_L32e PF01655.18 gi|145592205|ref|YP_001154207.1| - 8e-36 122.7 0.0 1.1e-35 122.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_S8 PF00410.19 gi|145592206|ref|YP_001154208.1| - 1.6e-21 76.6 0.5 4.4e-21 75.2 0.5 1.6 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|145592207|ref|YP_001154209.1| - 1.5e-11 43.9 3.6 1.8e-11 43.6 3.6 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e zf-FPG_IleRS PF06827.14 gi|145592207|ref|YP_001154209.1| - 0.02 14.7 4.5 0.027 14.3 4.5 1.2 1 0 0 1 1 1 0 Zinc finger found in FPG and IleRS Ribosomal_L37e PF01907.19 gi|145592207|ref|YP_001154209.1| - 8.7 6.6 8.7 1.8 8.8 0.7 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e SBP_bac_3 PF00497.20 gi|145592208|ref|YP_001154210.1| - 3e-54 183.8 0.1 3.8e-54 183.5 0.1 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|145592208|ref|YP_001154210.1| - 7.3e-09 35.8 0.0 2.1e-07 31.1 0.0 2.3 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|145592208|ref|YP_001154210.1| - 0.00049 20.1 0.0 0.00081 19.4 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|145592208|ref|YP_001154210.1| - 0.00066 19.4 0.2 0.014 15.0 0.1 2.5 2 1 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein CPP1-like PF11833.8 gi|145592208|ref|YP_001154210.1| - 0.074 12.7 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DAO PF01266.24 gi|145592209|ref|YP_001154211.1| - 1.6e-39 136.5 2.3 2.2e-39 136.1 2.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145592209|ref|YP_001154211.1| - 2.4e-08 33.6 1.4 0.0016 17.7 0.8 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|145592209|ref|YP_001154211.1| - 7.9e-08 31.8 0.4 4.8e-06 25.9 0.1 2.1 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|145592209|ref|YP_001154211.1| - 4e-07 30.2 0.1 8.4e-07 29.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|145592209|ref|YP_001154211.1| - 1.3e-06 27.8 0.1 0.001 18.2 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|145592209|ref|YP_001154211.1| - 0.00027 20.3 0.7 0.00067 19.0 1.0 1.5 2 0 0 2 2 2 1 FAD binding domain Amino_oxidase PF01593.24 gi|145592209|ref|YP_001154211.1| - 0.00052 19.4 0.2 0.56 9.4 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|145592209|ref|YP_001154211.1| - 0.0015 17.9 0.6 0.018 14.3 0.4 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|145592209|ref|YP_001154211.1| - 0.0017 17.2 0.8 0.0037 16.2 0.2 1.7 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.14 gi|145592209|ref|YP_001154211.1| - 0.0033 16.2 1.8 0.0091 14.7 1.4 1.8 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|145592209|ref|YP_001154211.1| - 0.0078 15.6 0.1 0.012 15.0 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|145592209|ref|YP_001154211.1| - 0.01 16.4 4.3 0.018 15.6 2.8 2.2 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|145592209|ref|YP_001154211.1| - 0.014 15.0 0.8 0.021 14.4 0.8 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|145592209|ref|YP_001154211.1| - 0.021 15.3 0.1 0.043 14.3 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|145592209|ref|YP_001154211.1| - 0.032 13.5 1.0 0.078 12.2 1.0 1.7 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 gi|145592209|ref|YP_001154211.1| - 0.037 13.7 0.8 0.071 12.8 0.8 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|145592209|ref|YP_001154211.1| - 0.053 12.6 1.8 6.9 5.6 2.2 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|145592209|ref|YP_001154211.1| - 0.07 13.1 3.3 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding TrkA_N PF02254.18 gi|145592209|ref|YP_001154211.1| - 0.38 11.0 1.5 1.3 9.3 0.7 2.1 2 0 0 2 2 2 0 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|145592209|ref|YP_001154211.1| - 3.6 6.8 6.0 0.37 10.1 1.6 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain FR47 PF08445.10 gi|145592210|ref|YP_001154212.1| - 1e-11 44.6 0.0 1.7e-11 43.9 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.25 gi|145592210|ref|YP_001154212.1| - 1.9e-10 41.0 0.1 3.3e-10 40.2 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|145592210|ref|YP_001154212.1| - 3.7e-06 27.3 0.1 8.1e-06 26.2 0.1 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|145592210|ref|YP_001154212.1| - 1.4e-05 25.0 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|145592210|ref|YP_001154212.1| - 1.9e-05 24.4 0.0 2.8e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_9 PF13527.7 gi|145592210|ref|YP_001154212.1| - 0.0023 18.0 0.1 0.041 14.0 0.1 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|145592210|ref|YP_001154212.1| - 0.051 14.3 0.0 0.079 13.6 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Gly_acyl_tr_C PF08444.10 gi|145592210|ref|YP_001154212.1| - 0.11 12.7 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region DUF429 PF04250.13 gi|145592211|ref|YP_001154213.1| - 5.1e-13 49.3 5.5 3.8e-08 33.4 5.5 2.9 1 1 0 1 1 1 1 Protein of unknown function (DUF429) adh_short_C2 PF13561.6 gi|145592212|ref|YP_001154214.1| - 1.9e-57 194.5 0.6 2.3e-57 194.3 0.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145592212|ref|YP_001154214.1| - 5.6e-49 166.3 0.1 7.2e-49 165.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145592212|ref|YP_001154214.1| - 1.9e-13 50.7 0.2 3.1e-13 50.0 0.2 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|145592212|ref|YP_001154214.1| - 1.9e-05 24.2 0.1 4.2e-05 23.1 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Robl_LC7 PF03259.17 gi|145592212|ref|YP_001154214.1| - 0.0068 16.2 0.3 0.38 10.6 0.0 2.7 3 0 0 3 3 3 1 Roadblock/LC7 domain Glyco_transf_28 PF03033.20 gi|145592212|ref|YP_001154214.1| - 0.011 15.8 0.0 0.032 14.3 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain Glyco_transf_4 PF13439.6 gi|145592212|ref|YP_001154214.1| - 0.07 13.1 0.0 3.8 7.5 0.0 2.3 2 0 0 2 2 2 0 Glycosyltransferase Family 4 DUF1776 PF08643.10 gi|145592212|ref|YP_001154214.1| - 0.094 12.1 0.0 3.1 7.1 0.0 2.2 2 1 0 2 2 2 0 Fungal family of unknown function (DUF1776) NmrA PF05368.13 gi|145592212|ref|YP_001154214.1| - 0.13 11.8 0.2 0.23 11.0 0.2 1.4 1 0 0 1 1 1 0 NmrA-like family DUF72 PF01904.18 gi|145592214|ref|YP_001154216.1| - 1.2e-44 153.0 2.5 1.5e-44 152.7 2.5 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 Methyltransf_23 PF13489.6 gi|145592214|ref|YP_001154216.1| - 0.0049 16.7 0.1 0.12 12.2 0.0 2.8 3 0 0 3 3 3 1 Methyltransferase domain Homeodomain PF00046.29 gi|145592214|ref|YP_001154216.1| - 0.085 12.7 0.0 0.46 10.4 0.0 2.2 3 0 0 3 3 3 0 Homeodomain LysE PF01810.18 gi|145592215|ref|YP_001154217.1| - 2.2e-21 76.2 17.1 2.9e-21 75.8 17.1 1.1 1 0 0 1 1 1 1 LysE type translocator CN_hydrolase PF00795.22 gi|145592216|ref|YP_001154218.1| - 2e-39 135.5 0.0 2.4e-39 135.2 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase NTP_transf_3 PF12804.7 gi|145592217|ref|YP_001154219.1| - 1.2e-32 113.5 3.1 1.5e-32 113.1 3.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|145592217|ref|YP_001154219.1| - 1.9e-05 24.7 0.0 3e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase MTS PF05175.14 gi|145592217|ref|YP_001154219.1| - 0.008 15.7 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ald_Xan_dh_C2 PF02738.18 gi|145592218|ref|YP_001154220.1| - 1.2e-164 548.8 0.4 1.6e-164 548.4 0.4 1.2 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|145592218|ref|YP_001154220.1| - 3.8e-22 78.7 0.2 6.5e-14 52.2 0.0 2.7 1 1 1 2 2 2 2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Fer2_2 PF01799.20 gi|145592219|ref|YP_001154221.1| - 6.1e-22 77.4 0.2 6.1e-22 77.4 0.2 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|145592219|ref|YP_001154221.1| - 2.4e-06 27.4 0.3 2.4e-06 27.4 0.3 2.1 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|145592219|ref|YP_001154221.1| - 7.7e-05 22.7 0.6 7.7e-05 22.7 0.6 1.8 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|145592220|ref|YP_001154222.1| - 3.3e-40 137.6 0.0 6.2e-40 136.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|145592220|ref|YP_001154222.1| - 5.4e-24 84.3 0.8 1e-23 83.4 0.8 1.5 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain PDH PF02153.17 gi|145592221|ref|YP_001154223.1| - 8.8e-12 44.6 0.0 1.7e-11 43.7 0.0 1.3 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|145592221|ref|YP_001154223.1| - 0.00035 21.1 0.1 0.0086 16.6 0.1 2.5 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HTH_20 PF12840.7 gi|145592225|ref|YP_001154227.1| - 4e-06 26.8 0.0 7.7e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|145592225|ref|YP_001154227.1| - 1e-05 25.0 0.0 4e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145592225|ref|YP_001154227.1| - 0.003 17.4 0.0 0.0058 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF977 PF06163.11 gi|145592225|ref|YP_001154227.1| - 0.036 14.0 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_38 PF13936.6 gi|145592225|ref|YP_001154227.1| - 0.094 12.5 0.0 4.1 7.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|145592225|ref|YP_001154227.1| - 0.1 12.4 2.2 2.3 8.1 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory proteins, tetR family FaeA PF04703.12 gi|145592225|ref|YP_001154227.1| - 0.2 12.0 0.0 0.2 12.0 0.0 1.7 2 0 0 2 2 2 0 FaeA-like protein CTP_transf_1 PF01148.20 gi|145592226|ref|YP_001154228.1| - 0.52 10.0 10.1 0.63 9.8 10.1 1.0 1 0 0 1 1 1 0 Cytidylyltransferase family Wzy_C PF04932.15 gi|145592226|ref|YP_001154228.1| - 2 8.0 19.8 2.2 7.9 4.1 2.0 1 1 1 2 2 2 0 O-Antigen ligase DUF1772 PF08592.11 gi|145592226|ref|YP_001154228.1| - 2.4 8.4 25.6 0.29 11.5 11.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF1772) DUF2070 PF09843.9 gi|145592226|ref|YP_001154228.1| - 6.8 4.9 9.8 7.5 4.7 9.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF373 PF04123.13 gi|145592227|ref|YP_001154229.1| - 0.16 11.4 3.1 0.16 11.4 3.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4128 PF13554.6 gi|145592230|ref|YP_001154232.1| - 0.069 13.2 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage related domain of unknown function MucBP_2 PF17965.1 gi|145592230|ref|YP_001154232.1| - 0.15 12.7 6.8 0.6 10.7 6.8 2.0 1 1 0 1 1 1 0 Mucin binding domain MMR_HSR1 PF01926.23 gi|145592231|ref|YP_001154233.1| - 1.6e-07 31.4 0.0 2e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.22 gi|145592231|ref|YP_001154233.1| - 3.3e-05 23.6 0.1 0.0002 21.0 0.1 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.21 gi|145592231|ref|YP_001154233.1| - 0.0022 17.5 0.0 0.0034 16.8 0.0 1.4 1 1 0 1 1 1 1 ADP-ribosylation factor family Roc PF08477.13 gi|145592231|ref|YP_001154233.1| - 0.0072 16.5 0.2 0.15 12.3 0.2 2.3 1 1 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|145592231|ref|YP_001154233.1| - 0.019 14.9 0.0 0.55 10.1 0.1 2.5 2 1 0 2 2 2 0 RsgA GTPase PduV-EutP PF10662.9 gi|145592231|ref|YP_001154233.1| - 0.021 14.6 0.0 0.077 12.7 0.0 2.0 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|145592231|ref|YP_001154233.1| - 0.025 14.3 0.0 0.03 14.1 0.0 1.1 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ArgoL1 PF08699.10 gi|145592231|ref|YP_001154233.1| - 0.065 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Argonaute linker 1 domain cobW PF02492.19 gi|145592231|ref|YP_001154233.1| - 0.073 12.7 0.3 5.5 6.5 0.0 2.2 1 1 1 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SRPRB PF09439.10 gi|145592231|ref|YP_001154233.1| - 0.083 12.3 0.0 0.099 12.1 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|145592231|ref|YP_001154233.1| - 0.2 11.7 0.0 0.5 10.4 0.0 1.6 1 1 1 2 2 2 0 Dynamin family PaREP1 PF05942.11 gi|145592232|ref|YP_001154234.1| - 4.4e-28 97.5 6.1 5e-28 97.3 6.1 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|145592232|ref|YP_001154234.1| - 0.11 12.7 3.3 0.25 11.5 3.3 1.7 1 1 0 1 1 1 0 HEPN domain U79_P34 PF03064.16 gi|145592233|ref|YP_001154235.1| - 0.025 13.9 5.5 0.042 13.2 5.5 1.4 1 0 0 1 1 1 0 HSV U79 / HCMV P34 GerPC PF10737.9 gi|145592233|ref|YP_001154235.1| - 0.075 13.1 0.3 0.15 12.1 0.1 1.6 1 1 0 1 1 1 0 Spore germination protein GerPC Exonuc_VII_L PF02601.15 gi|145592233|ref|YP_001154235.1| - 0.082 12.5 1.8 0.1 12.2 1.8 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF2294 PF10057.9 gi|145592233|ref|YP_001154235.1| - 0.091 12.9 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2294) S6OS1 PF15676.5 gi|145592233|ref|YP_001154235.1| - 0.4 9.1 6.0 0.55 8.7 6.0 1.1 1 0 0 1 1 1 0 Six6 opposite strand transcript 1 family DDRGK PF09756.9 gi|145592233|ref|YP_001154235.1| - 0.61 9.7 12.9 0.94 9.0 12.9 1.3 1 0 0 1 1 1 0 DDRGK domain APG17 PF04108.12 gi|145592233|ref|YP_001154235.1| - 0.82 8.7 7.6 1.4 8.0 7.1 1.7 1 1 0 1 1 1 0 Autophagy protein Apg17 Na_K-ATPase PF00287.18 gi|145592233|ref|YP_001154235.1| - 1.2 8.2 4.4 3.9 6.5 1.0 2.1 1 1 1 2 2 2 0 Sodium / potassium ATPase beta chain DUF4200 PF13863.6 gi|145592233|ref|YP_001154235.1| - 1.3 9.4 14.7 0.74 10.2 10.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Activator-TraM PF11657.8 gi|145592233|ref|YP_001154235.1| - 2.1 8.2 10.9 0.4 10.5 2.0 2.2 1 1 1 2 2 2 0 Transcriptional activator TraM Muted PF14942.6 gi|145592233|ref|YP_001154235.1| - 2.9 8.2 11.1 1.8 8.9 7.4 2.2 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein DHquinase_I PF01487.15 gi|145592234|ref|YP_001154236.1| - 5e-43 148.0 0.0 7e-43 147.5 0.0 1.1 1 0 0 1 1 1 1 Type I 3-dehydroquinase CM_2 PF01817.21 gi|145592234|ref|YP_001154236.1| - 2.3e-12 47.1 0.0 6e-12 45.7 0.0 1.8 1 0 0 1 1 1 1 Chorismate mutase type II GP88 PF17338.2 gi|145592235|ref|YP_001154237.1| - 5.5e-16 58.7 0.2 1.1e-15 57.8 0.2 1.4 1 0 0 1 1 1 1 Gene product 88 PRT_C PF08372.10 gi|145592235|ref|YP_001154237.1| - 0.055 13.2 0.2 0.1 12.3 0.2 1.4 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal Aminotran_1_2 PF00155.21 gi|145592236|ref|YP_001154238.1| - 6.9e-34 117.6 0.0 1.8e-33 116.2 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|145592236|ref|YP_001154238.1| - 0.18 10.5 0.0 1.4 7.6 0.0 2.4 1 1 0 1 1 1 0 Alanine-glyoxylate amino-transferase GHMP_kinases_N PF00288.26 gi|145592238|ref|YP_001154240.1| - 5.1e-10 39.4 1.8 1.1e-09 38.3 1.8 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|145592238|ref|YP_001154240.1| - 0.025 14.9 0.0 0.084 13.2 0.0 1.9 1 0 0 1 1 1 0 GHMP kinases C terminal LPD7 PF18821.1 gi|145592238|ref|YP_001154240.1| - 0.03 14.5 0.0 2.7 8.2 0.0 2.4 2 1 0 2 2 2 0 Large polyvalent protein-associated domain 7 PaREP1 PF05942.11 gi|145592239|ref|YP_001154241.1| - 1.7e-05 24.7 0.0 2.5e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glyco_hydro_31 PF01055.26 gi|145592240|ref|YP_001154242.1| - 1e-125 420.4 0.0 1.2e-125 420.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|145592240|ref|YP_001154242.1| - 1.8e-15 57.0 0.1 4.4e-15 55.8 0.1 1.7 1 0 0 1 1 1 1 Galactose mutarotase-like GHL15 PF14885.6 gi|145592240|ref|YP_001154242.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 15 GHL10 PF02638.15 gi|145592240|ref|YP_001154242.1| - 0.19 10.8 0.0 12 4.9 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase-like 10 DUF2175 PF09943.9 gi|145592241|ref|YP_001154243.1| - 6.7e-35 119.3 0.3 7.5e-35 119.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) XkdW PF09636.10 gi|145592241|ref|YP_001154243.1| - 0.025 14.7 0.3 0.05 13.7 0.3 1.4 1 0 0 1 1 1 0 XkdW protein YhfH PF14149.6 gi|145592241|ref|YP_001154243.1| - 0.04 13.9 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 YhfH-like protein Nbl1_Borealin_N PF10444.9 gi|145592241|ref|YP_001154243.1| - 0.097 12.3 0.1 0.13 11.9 0.1 1.3 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal Ribosomal_L3 PF00297.22 gi|145592242|ref|YP_001154244.1| - 9.7e-74 248.6 0.0 2.4e-73 247.2 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|145592243|ref|YP_001154245.1| - 8.2e-41 139.8 0.0 9.5e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|145592244|ref|YP_001154246.1| - 2.6e-15 56.5 5.7 2.7e-14 53.3 5.7 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 CheF-arch PF04283.12 gi|145592244|ref|YP_001154246.1| - 0.0022 17.8 0.6 0.0023 17.7 0.6 1.0 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea SWI2_SNF2 PF18766.1 gi|145592244|ref|YP_001154246.1| - 0.023 14.4 0.2 0.024 14.3 0.2 1.1 1 0 0 1 1 1 0 SWI2/SNF2 ATPase BtrH_N PF14399.6 gi|145592244|ref|YP_001154246.1| - 0.11 12.7 0.1 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Butirosin biosynthesis protein H, N-terminal TusA PF01206.17 gi|145592244|ref|YP_001154246.1| - 0.15 11.9 0.8 0.2 11.5 0.8 1.3 1 1 0 1 1 1 0 Sulfurtransferase TusA AAA_24 PF13479.6 gi|145592245|ref|YP_001154247.1| - 1.5e-07 31.4 0.0 3e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|145592245|ref|YP_001154247.1| - 2.4e-05 24.7 0.0 6.6e-05 23.3 0.0 1.7 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|145592245|ref|YP_001154247.1| - 3.3e-05 24.3 0.0 0.00013 22.4 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|145592245|ref|YP_001154247.1| - 4.6e-05 23.1 0.1 0.00069 19.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|145592245|ref|YP_001154247.1| - 5e-05 22.8 0.0 0.012 14.9 0.0 2.4 1 1 0 1 1 1 1 KaiC GvpD PF07088.11 gi|145592245|ref|YP_001154247.1| - 0.00022 20.0 0.0 0.026 13.1 0.0 2.3 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.6 gi|145592245|ref|YP_001154247.1| - 0.00027 21.2 0.0 0.00079 19.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|145592245|ref|YP_001154247.1| - 0.00038 20.4 0.0 1.2 9.1 0.0 2.3 1 1 0 2 2 2 2 NTPase RuvB_N PF05496.12 gi|145592245|ref|YP_001154247.1| - 0.0024 17.6 0.1 0.012 15.4 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_23 PF13476.6 gi|145592245|ref|YP_001154247.1| - 0.0032 18.0 0.0 0.0053 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|145592245|ref|YP_001154247.1| - 0.0042 16.9 0.0 0.0083 15.9 0.0 1.4 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.6 gi|145592245|ref|YP_001154247.1| - 0.006 17.1 0.0 0.018 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|145592245|ref|YP_001154247.1| - 0.011 15.0 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_5 PF07728.14 gi|145592245|ref|YP_001154247.1| - 0.013 15.5 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.18 gi|145592245|ref|YP_001154247.1| - 0.021 14.6 0.0 0.094 12.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial dnaA protein DUF2075 PF09848.9 gi|145592245|ref|YP_001154247.1| - 0.026 13.8 0.0 0.18 11.0 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.10 gi|145592245|ref|YP_001154247.1| - 0.037 13.5 0.0 0.18 11.2 0.0 1.9 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|145592245|ref|YP_001154247.1| - 0.045 14.0 0.0 0.095 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|145592245|ref|YP_001154247.1| - 0.051 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NCBP3 PF10309.9 gi|145592245|ref|YP_001154247.1| - 0.068 13.0 0.2 11 5.9 0.0 2.5 2 0 0 2 2 2 0 Nuclear cap-binding protein subunit 3 ATPase_2 PF01637.18 gi|145592245|ref|YP_001154247.1| - 0.068 13.1 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|145592245|ref|YP_001154247.1| - 0.083 12.6 0.1 0.71 9.6 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_19 PF13245.6 gi|145592245|ref|YP_001154247.1| - 0.088 13.1 0.1 0.19 12.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|145592245|ref|YP_001154247.1| - 0.089 13.2 0.0 1.2 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|145592245|ref|YP_001154247.1| - 0.099 12.7 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|145592245|ref|YP_001154247.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|145592245|ref|YP_001154247.1| - 0.12 12.2 0.0 0.41 10.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain HEM4 PF02602.15 gi|145592245|ref|YP_001154247.1| - 0.13 11.6 0.0 0.38 10.1 0.0 1.7 2 0 0 2 2 2 0 Uroporphyrinogen-III synthase HemD SNase PF00565.17 gi|145592246|ref|YP_001154248.1| - 0.0061 17.0 0.0 0.0078 16.7 0.0 1.1 1 0 0 1 1 1 1 Staphylococcal nuclease homologue KilA-N PF04383.13 gi|145592246|ref|YP_001154248.1| - 0.16 11.9 0.0 0.23 11.3 0.0 1.4 1 1 0 1 1 1 0 KilA-N domain DUF3496 PF12001.8 gi|145592246|ref|YP_001154248.1| - 0.22 11.9 0.0 0.34 11.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3496) DZR PF12773.7 gi|145592247|ref|YP_001154249.1| - 0.00086 19.3 0.8 0.0016 18.4 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|145592247|ref|YP_001154249.1| - 0.0019 18.1 0.9 0.004 17.0 0.9 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|145592247|ref|YP_001154249.1| - 0.0099 15.9 2.7 0.46 10.6 0.1 2.5 2 0 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain zinc-ribbons_6 PF07191.12 gi|145592247|ref|YP_001154249.1| - 0.011 15.6 0.5 0.021 14.8 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.9 gi|145592247|ref|YP_001154249.1| - 0.022 14.8 2.5 2.8 8.1 0.4 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.16 gi|145592247|ref|YP_001154249.1| - 0.024 14.7 4.6 3.5 7.7 0.1 3.3 4 0 0 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain zf-NADH-PPase PF09297.11 gi|145592247|ref|YP_001154249.1| - 0.029 14.0 2.0 0.074 12.7 2.0 1.7 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|145592247|ref|YP_001154249.1| - 0.043 13.9 3.8 0.28 11.3 3.8 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145592247|ref|YP_001154249.1| - 0.054 12.9 5.7 0.47 9.9 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145592247|ref|YP_001154249.1| - 0.055 13.4 4.2 4.6 7.2 0.5 2.6 1 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|145592247|ref|YP_001154249.1| - 0.058 13.6 2.6 0.12 12.5 2.6 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_ribbon_SprT PF17283.2 gi|145592247|ref|YP_001154249.1| - 0.06 13.3 0.7 8.4 6.4 0.1 2.6 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|145592247|ref|YP_001154249.1| - 0.069 12.9 4.1 0.42 10.4 4.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145592247|ref|YP_001154249.1| - 0.084 12.4 2.1 2.2 7.9 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|145592247|ref|YP_001154249.1| - 0.11 12.5 2.0 9.1 6.3 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.6 gi|145592247|ref|YP_001154249.1| - 0.12 12.3 0.3 0.28 11.1 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.6 gi|145592247|ref|YP_001154249.1| - 0.18 11.6 1.5 8.2 6.3 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|145592247|ref|YP_001154249.1| - 0.2 11.7 0.4 0.34 11.0 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|145592247|ref|YP_001154249.1| - 0.3 11.0 3.1 0.43 10.5 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-TFIIB PF13453.6 gi|145592247|ref|YP_001154249.1| - 0.4 10.0 2.5 13 5.2 0.2 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-UDP PF14569.6 gi|145592247|ref|YP_001154249.1| - 0.82 9.8 4.1 3.4 7.9 0.4 2.3 1 1 1 2 2 2 0 Zinc-binding RING-finger Mu-like_Com PF10122.9 gi|145592247|ref|YP_001154249.1| - 1.3 8.6 4.8 4.8 6.7 4.0 2.2 2 1 1 3 3 3 0 Mu-like prophage protein Com PhnA_Zn_Ribbon PF08274.12 gi|145592247|ref|YP_001154249.1| - 4.2 7.4 5.9 76 3.4 5.9 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2067 PF09840.9 gi|145592248|ref|YP_001154250.1| - 6.2e-44 149.8 0.2 7.1e-44 149.6 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) HAUS-augmin3 PF14932.6 gi|145592248|ref|YP_001154250.1| - 0.15 11.6 0.3 2.9 7.4 0.1 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 3 RNA_pol_L_2 PF13656.6 gi|145592249|ref|YP_001154251.1| - 1.7e-13 50.1 0.0 1.9e-13 50.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain EMG1 PF03587.14 gi|145592250|ref|YP_001154252.1| - 6.2e-40 136.9 0.0 7.2e-40 136.7 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Ribosomal_S18 PF01084.20 gi|145592251|ref|YP_001154253.1| - 0.22 11.8 0.3 6.4 7.1 0.1 2.3 2 0 0 2 2 2 0 Ribosomal protein S18 Peptidase_S8 PF00082.22 gi|145592252|ref|YP_001154254.1| - 5e-58 196.7 5.6 6.7e-58 196.3 5.6 1.1 1 0 0 1 1 1 1 Subtilase family Aconitase PF00330.20 gi|145592253|ref|YP_001154255.1| - 1.1e-76 258.7 1.2 2.7e-74 250.9 1.2 2.6 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|145592253|ref|YP_001154255.1| - 0.00022 20.1 0.0 0.00028 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) MgsA_C PF12002.8 gi|145592253|ref|YP_001154255.1| - 0.097 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 MgsA AAA+ ATPase C terminal OTCace PF00185.24 gi|145592254|ref|YP_001154256.1| - 8.1e-56 188.5 0.0 7.5e-54 182.1 0.0 2.1 2 0 0 2 2 2 2 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|145592254|ref|YP_001154256.1| - 3.2e-41 140.8 0.2 6.2e-41 139.9 0.2 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GSH-S_N PF02951.14 gi|145592254|ref|YP_001154256.1| - 0.067 13.3 0.1 0.2 11.8 0.1 1.9 2 0 0 2 2 2 0 Prokaryotic glutathione synthetase, N-terminal domain HMGL-like PF00682.19 gi|145592255|ref|YP_001154257.1| - 1.9e-72 244.0 2.2 1.9e-72 244.0 2.2 1.9 2 1 1 3 3 3 1 HMGL-like AsnC_trans_reg PF01037.21 gi|145592255|ref|YP_001154257.1| - 2.7e-16 59.3 1.0 1.5e-15 56.9 0.3 2.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|145592255|ref|YP_001154257.1| - 0.0063 16.5 0.7 0.0063 16.5 0.7 2.8 3 0 0 3 3 3 1 NapD protein ACT_4 PF13291.6 gi|145592255|ref|YP_001154257.1| - 0.044 14.4 1.2 0.2 12.3 1.1 2.1 1 1 1 2 2 2 0 ACT domain AlkA_N PF06029.11 gi|145592255|ref|YP_001154257.1| - 0.055 13.7 0.5 7.5 6.9 0.1 3.1 3 0 0 3 3 3 0 AlkA N-terminal domain PAPS_reduct PF01507.19 gi|145592256|ref|YP_001154258.1| - 6.1e-41 140.3 0.0 1.3e-40 139.3 0.0 1.6 2 0 0 2 2 2 1 Phosphoadenosine phosphosulfate reductase family Fer4_21 PF14697.6 gi|145592256|ref|YP_001154258.1| - 2.1e-06 27.8 7.0 2.1e-06 27.8 7.0 2.1 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145592256|ref|YP_001154258.1| - 2.3e-05 24.0 15.2 2.6e-05 23.8 1.5 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145592256|ref|YP_001154258.1| - 3.3e-05 23.8 12.6 0.00073 19.5 0.9 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145592256|ref|YP_001154258.1| - 4.9e-05 23.8 6.6 4.9e-05 23.8 6.6 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145592256|ref|YP_001154258.1| - 6.4e-05 22.8 1.2 6.4e-05 22.8 1.2 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145592256|ref|YP_001154258.1| - 0.00013 22.1 6.6 0.00013 22.1 6.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592256|ref|YP_001154258.1| - 0.00052 20.1 19.2 0.0025 17.9 10.2 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592256|ref|YP_001154258.1| - 0.0042 18.0 10.2 0.035 15.1 0.3 2.9 2 1 2 4 4 4 1 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|145592256|ref|YP_001154258.1| - 0.0051 17.0 2.8 0.013 15.7 2.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145592256|ref|YP_001154258.1| - 0.024 15.1 7.0 0.19 12.2 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain CsgE PF10627.9 gi|145592256|ref|YP_001154258.1| - 0.079 13.2 0.6 7.8 6.8 0.0 3.0 3 0 0 3 3 3 0 Curli assembly protein CsgE Fer4_13 PF13370.6 gi|145592256|ref|YP_001154258.1| - 1.3 9.6 13.3 0.21 12.2 1.9 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|145592256|ref|YP_001154258.1| - 1.9 9.1 10.9 4.8 7.8 3.1 2.7 1 1 2 3 3 3 0 4Fe-4S dicluster domain Peptidase_M54 PF07998.11 gi|145592257|ref|YP_001154259.1| - 6e-26 91.6 0.0 7.1e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.24 gi|145592257|ref|YP_001154259.1| - 0.0018 18.2 0.0 0.0018 18.2 0.0 1.1 1 0 0 1 1 1 1 Matrixin Peptidase_M66 PF10462.9 gi|145592257|ref|YP_001154259.1| - 0.018 14.0 0.0 0.023 13.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.13 gi|145592257|ref|YP_001154259.1| - 0.069 13.1 0.0 0.094 12.6 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.6 gi|145592257|ref|YP_001154259.1| - 0.09 12.9 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12 Metallopep PF12044.8 gi|145592257|ref|YP_001154259.1| - 0.25 9.9 0.1 0.31 9.6 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Aconitase_C PF00694.19 gi|145592258|ref|YP_001154260.1| - 1.2e-16 61.3 0.0 1.6e-16 60.8 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|145592258|ref|YP_001154260.1| - 0.0094 15.6 0.6 0.12 11.9 0.6 2.1 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus HMGL-like PF00682.19 gi|145592259|ref|YP_001154261.1| - 9.5e-91 304.0 3.5 1.2e-90 303.7 3.5 1.1 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|145592259|ref|YP_001154261.1| - 0.017 14.6 0.3 0.044 13.2 0.1 1.8 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel PTE PF02126.18 gi|145592259|ref|YP_001154261.1| - 0.024 14.1 0.2 0.065 12.7 0.0 1.8 2 1 1 3 3 3 0 Phosphotriesterase family Pro_dh PF01619.18 gi|145592259|ref|YP_001154261.1| - 0.066 12.7 0.1 0.098 12.2 0.1 1.2 1 0 0 1 1 1 0 Proline dehydrogenase Glyco_hydro_97 PF10566.9 gi|145592259|ref|YP_001154261.1| - 0.095 12.0 0.1 0.34 10.1 0.0 1.9 1 1 1 2 2 2 0 Glycoside hydrolase 97 Iso_dh PF00180.20 gi|145592260|ref|YP_001154262.1| - 3.5e-91 305.9 1.2 4.4e-91 305.6 1.2 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|145592260|ref|YP_001154262.1| - 0.055 12.9 0.3 0.11 11.8 0.1 1.6 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA ELFV_dehydrog PF00208.21 gi|145592261|ref|YP_001154263.1| - 7.8e-65 219.0 0.2 1e-64 218.6 0.2 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|145592261|ref|YP_001154263.1| - 1.1e-52 177.3 0.0 2e-52 176.5 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|145592261|ref|YP_001154263.1| - 0.0043 16.4 1.8 0.0044 16.4 0.3 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.14 gi|145592261|ref|YP_001154263.1| - 0.025 13.8 0.2 0.049 12.9 0.2 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Bac_GDH PF05088.12 gi|145592261|ref|YP_001154263.1| - 0.12 9.9 0.1 0.16 9.4 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase BPD_transp_1 PF00528.22 gi|145592264|ref|YP_001154266.1| - 1.9e-15 57.1 8.0 1.9e-15 57.1 8.0 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BofA PF07441.11 gi|145592264|ref|YP_001154266.1| - 0.004 17.3 4.6 0.11 12.7 1.4 2.3 2 0 0 2 2 2 2 SigmaK-factor processing regulatory protein BofA ABC_tran PF00005.27 gi|145592265|ref|YP_001154267.1| - 6.2e-36 123.9 0.0 7.8e-36 123.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145592265|ref|YP_001154267.1| - 2.6e-12 47.2 0.2 2.1e-07 31.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145592265|ref|YP_001154267.1| - 3.3e-08 33.3 0.0 1.7e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|145592265|ref|YP_001154267.1| - 4e-05 23.3 0.1 8.6e-05 22.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|145592265|ref|YP_001154267.1| - 0.00023 21.4 0.5 0.0081 16.4 0.5 2.3 1 1 0 1 1 1 1 AAA domain FtsK_SpoIIIE PF01580.18 gi|145592265|ref|YP_001154267.1| - 0.00055 19.4 0.2 0.0016 17.8 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_16 PF13191.6 gi|145592265|ref|YP_001154267.1| - 0.0015 18.9 0.6 0.0052 17.2 0.6 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|145592265|ref|YP_001154267.1| - 0.0021 17.8 0.0 0.052 13.3 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|145592265|ref|YP_001154267.1| - 0.0025 17.6 0.0 0.0045 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|145592265|ref|YP_001154267.1| - 0.0052 15.9 0.0 0.0088 15.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|145592265|ref|YP_001154267.1| - 0.0054 16.5 0.1 0.74 9.5 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein RsgA_GTPase PF03193.16 gi|145592265|ref|YP_001154267.1| - 0.0058 16.5 0.1 0.011 15.6 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|145592265|ref|YP_001154267.1| - 0.0059 16.8 0.1 0.013 15.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|145592265|ref|YP_001154267.1| - 0.0068 16.0 0.9 0.046 13.3 0.9 2.2 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|145592265|ref|YP_001154267.1| - 0.0088 16.2 0.1 0.022 14.9 0.1 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_23 PF13476.6 gi|145592265|ref|YP_001154267.1| - 0.01 16.3 0.0 0.016 15.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145592265|ref|YP_001154267.1| - 0.011 15.6 0.1 0.03 14.2 0.0 1.8 1 1 1 2 2 2 0 NACHT domain ABC_ATPase PF09818.9 gi|145592265|ref|YP_001154267.1| - 0.011 14.5 0.2 0.66 8.7 0.0 2.7 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.29 gi|145592265|ref|YP_001154267.1| - 0.014 15.9 0.1 0.23 11.9 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|145592265|ref|YP_001154267.1| - 0.017 14.9 0.7 0.13 11.9 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|145592265|ref|YP_001154267.1| - 0.018 15.1 0.7 1.6 8.8 0.1 2.7 2 2 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|145592265|ref|YP_001154267.1| - 0.024 14.9 0.2 0.17 12.1 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATPase_2 PF01637.18 gi|145592265|ref|YP_001154267.1| - 0.025 14.5 0.1 0.07 13.0 0.1 1.8 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|145592265|ref|YP_001154267.1| - 0.033 14.1 0.4 0.12 12.3 0.1 2.0 2 1 1 3 3 2 0 NTPase MMR_HSR1 PF01926.23 gi|145592265|ref|YP_001154267.1| - 0.038 14.1 0.0 0.064 13.3 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase Pox_A32 PF04665.12 gi|145592265|ref|YP_001154267.1| - 0.038 13.4 0.0 0.059 12.8 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein Mg_chelatase PF01078.21 gi|145592265|ref|YP_001154267.1| - 0.05 13.0 0.0 0.12 11.7 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI TrwB_AAD_bind PF10412.9 gi|145592265|ref|YP_001154267.1| - 0.055 12.4 0.0 0.089 11.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|145592265|ref|YP_001154267.1| - 0.067 13.2 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|145592265|ref|YP_001154267.1| - 0.07 13.7 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|145592265|ref|YP_001154267.1| - 0.091 11.5 0.1 0.16 10.8 0.1 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA_28 PF13521.6 gi|145592265|ref|YP_001154267.1| - 0.1 12.9 0.0 0.24 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Roc PF08477.13 gi|145592265|ref|YP_001154267.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 2 0 0 2 2 1 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|145592265|ref|YP_001154267.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.13 gi|145592265|ref|YP_001154267.1| - 0.11 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|145592265|ref|YP_001154267.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ATP_bind_1 PF03029.17 gi|145592265|ref|YP_001154267.1| - 0.12 12.1 0.1 0.25 11.1 0.0 1.5 2 0 0 2 2 1 0 Conserved hypothetical ATP binding protein Sigma54_activat PF00158.26 gi|145592265|ref|YP_001154267.1| - 0.13 11.9 0.1 0.87 9.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|145592265|ref|YP_001154267.1| - 0.15 12.4 0.0 0.25 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase G-alpha PF00503.20 gi|145592265|ref|YP_001154267.1| - 0.17 11.0 0.0 0.24 10.5 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit Molybdopterin PF00384.22 gi|145592266|ref|YP_001154268.1| - 2.6e-23 82.7 0.0 1e-09 37.9 0.0 3.0 3 0 0 3 3 3 3 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|145592266|ref|YP_001154268.1| - 0.00016 21.7 0.0 0.00045 20.2 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TatD_DNase PF01026.21 gi|145592267|ref|YP_001154269.1| - 2.1e-43 148.6 0.0 2.9e-43 148.1 0.0 1.2 1 0 0 1 1 1 1 TatD related DNase TPR_9 PF13371.6 gi|145592267|ref|YP_001154269.1| - 0.078 13.1 0.0 8 6.7 0.0 2.6 1 1 1 2 2 2 0 Tetratricopeptide repeat Metallophos PF00149.28 gi|145592268|ref|YP_001154270.1| - 3.1e-22 80.1 0.0 3.9e-22 79.8 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|145592268|ref|YP_001154270.1| - 6.1e-06 26.5 0.2 0.00028 21.1 0.0 2.0 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Glyco_hydro_57 PF03065.15 gi|145592269|ref|YP_001154271.1| - 0.11 11.6 0.0 0.22 10.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 PsaX PF08078.12 gi|145592269|ref|YP_001154271.1| - 1.9 8.5 4.9 0.99 9.4 1.8 2.1 2 0 0 2 2 2 0 PsaX family DUF4892 PF16234.5 gi|145592270|ref|YP_001154272.1| - 0.0021 17.6 0.3 0.0032 17.0 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4892) dUTPase PF00692.19 gi|145592271|ref|YP_001154273.1| - 1.9e-20 72.9 0.0 3.7e-19 68.7 0.0 2.0 1 1 1 2 2 2 1 dUTPase DCD PF06559.11 gi|145592271|ref|YP_001154273.1| - 0.0023 16.8 0.0 0.01 14.6 0.0 2.2 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ThiS PF02597.20 gi|145592273|ref|YP_001154275.1| - 9.9e-08 32.5 0.0 1.1e-07 32.4 0.0 1.0 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.11 gi|145592273|ref|YP_001154275.1| - 1.1e-06 28.9 0.0 1.2e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) OprF PF05736.11 gi|145592273|ref|YP_001154275.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.2 1 1 0 1 1 1 0 OprF membrane domain DNA_binding_1 PF01035.20 gi|145592274|ref|YP_001154276.1| - 2.1e-22 79.0 0.0 3.2e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Fer4_15 PF13459.6 gi|145592275|ref|YP_001154277.1| - 3.3e-10 40.5 0.0 3.8e-10 40.4 0.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145592275|ref|YP_001154277.1| - 4.3e-06 27.2 0.0 5.5e-06 26.8 0.0 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|145592275|ref|YP_001154277.1| - 0.0019 18.3 0.1 0.0082 16.2 0.1 1.8 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Hydrolase_3 PF08282.12 gi|145592276|ref|YP_001154278.1| - 4.6e-07 29.8 0.0 5.2e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|145592276|ref|YP_001154278.1| - 7.8e-06 26.4 0.2 1.4e-05 25.6 0.2 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|145592276|ref|YP_001154278.1| - 0.00019 21.8 0.2 0.021 15.1 0.1 2.3 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase PhoU PF01895.19 gi|145592277|ref|YP_001154279.1| - 1.7e-10 41.2 4.9 1.4e-08 35.1 0.8 2.9 3 0 0 3 3 3 2 PhoU domain MazE_antitoxin PF04014.18 gi|145592277|ref|YP_001154279.1| - 7.3e-07 29.0 0.1 2.3e-06 27.4 0.1 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin RNA_pol_Rpb4 PF03874.16 gi|145592277|ref|YP_001154279.1| - 0.026 14.9 0.0 0.049 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase Rpb4 DUF1664 PF07889.12 gi|145592277|ref|YP_001154279.1| - 0.038 14.0 0.6 4.9 7.2 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) GAT PF03127.14 gi|145592277|ref|YP_001154279.1| - 0.13 12.6 0.1 0.29 11.4 0.1 1.5 1 0 0 1 1 1 0 GAT domain DUF1614 PF07758.11 gi|145592278|ref|YP_001154280.1| - 8.8e-46 156.0 14.5 8.8e-46 156.0 14.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DMRL_synthase PF00885.19 gi|145592279|ref|YP_001154281.1| - 5.5e-09 36.0 0.2 6.7e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase RHH_1 PF01402.21 gi|145592280|ref|YP_001154282.1| - 4.6e-07 29.5 0.3 1.1e-06 28.4 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|145592280|ref|YP_001154282.1| - 1.1e-06 28.7 0.9 3.6e-06 27.0 0.3 1.9 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_3 PF12651.7 gi|145592280|ref|YP_001154282.1| - 2.9e-06 27.1 0.3 1.1e-05 25.3 0.1 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix domain RHH_5 PF07878.11 gi|145592280|ref|YP_001154282.1| - 7.4e-05 22.5 0.1 0.00013 21.8 0.1 1.4 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 PSK_trans_fac PF07704.11 gi|145592280|ref|YP_001154282.1| - 0.0014 19.4 0.2 0.0027 18.4 0.0 1.6 2 0 0 2 2 2 1 Rv0623-like transcription factor ACT_6 PF13740.6 gi|145592280|ref|YP_001154282.1| - 0.01 15.8 0.1 0.11 12.5 0.1 2.1 2 0 0 2 2 2 0 ACT domain Prok-JAB PF14464.6 gi|145592281|ref|YP_001154283.1| - 7.2e-18 64.5 0.0 8.3e-18 64.3 0.0 1.0 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Peptidase_M24 PF00557.24 gi|145592282|ref|YP_001154284.1| - 1e-57 195.2 0.0 1.4e-57 194.8 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|145592282|ref|YP_001154284.1| - 2.2e-06 28.3 0.0 3.7e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HTH_24 PF13412.6 gi|145592284|ref|YP_001154286.1| - 7.3e-08 31.9 0.0 1.5e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145592284|ref|YP_001154286.1| - 4.5e-06 26.5 0.3 1.6e-05 24.7 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|145592284|ref|YP_001154286.1| - 0.00012 21.9 0.0 0.00075 19.4 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.7 gi|145592284|ref|YP_001154286.1| - 0.00014 21.7 0.1 0.00084 19.2 0.0 2.1 2 1 1 3 3 3 1 MarR family HTH_11 PF08279.12 gi|145592284|ref|YP_001154286.1| - 0.00029 20.7 0.0 0.00059 19.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.10 gi|145592284|ref|YP_001154286.1| - 0.00046 19.9 0.2 0.0013 18.5 0.0 1.8 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|145592284|ref|YP_001154286.1| - 0.00084 19.1 0.0 0.0016 18.2 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain DprA_WH PF17782.1 gi|145592284|ref|YP_001154286.1| - 0.0025 17.9 0.0 0.0052 16.9 0.0 1.4 1 0 0 1 1 1 1 DprA winged helix domain FaeA PF04703.12 gi|145592284|ref|YP_001154286.1| - 0.0045 17.3 0.0 0.007 16.7 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_41 PF14502.6 gi|145592284|ref|YP_001154286.1| - 0.0086 15.7 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.7 gi|145592284|ref|YP_001154286.1| - 0.01 15.9 0.0 0.025 14.6 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|145592284|ref|YP_001154286.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|145592284|ref|YP_001154286.1| - 0.032 14.6 0.0 0.099 13.0 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator HTH_27 PF13463.6 gi|145592284|ref|YP_001154286.1| - 0.038 14.5 0.0 0.59 10.7 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|145592284|ref|YP_001154286.1| - 0.11 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FAD-oxidase_C PF02913.19 gi|145592285|ref|YP_001154287.1| - 1.2e-48 166.0 0.0 1.8e-48 165.4 0.0 1.3 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|145592285|ref|YP_001154287.1| - 1.3e-40 138.4 1.3 2.7e-40 137.3 1.3 1.6 1 0 0 1 1 1 1 FAD binding domain NOD PF06816.13 gi|145592286|ref|YP_001154288.1| - 0.023 14.3 0.0 0.076 12.6 0.0 1.8 1 1 1 2 2 2 0 NOTCH protein Transglut_core PF01841.19 gi|145592286|ref|YP_001154288.1| - 0.16 12.4 0.0 12 6.4 0.0 2.2 1 1 1 2 2 2 0 Transglutaminase-like superfamily TatD_DNase PF01026.21 gi|145592287|ref|YP_001154289.1| - 2.4e-26 92.6 0.0 3.1e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase AFOR_C PF01314.18 gi|145592288|ref|YP_001154290.1| - 1.7e-103 346.6 0.0 2.2e-103 346.2 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|145592288|ref|YP_001154290.1| - 1.4e-72 243.7 0.2 2.8e-72 242.7 0.2 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain DegT_DnrJ_EryC1 PF01041.17 gi|145592289|ref|YP_001154291.1| - 1.9e-115 386.1 0.4 8.1e-115 384.0 0.4 1.7 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|145592289|ref|YP_001154291.1| - 4.3e-05 22.6 0.4 8.1e-05 21.7 0.4 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|145592289|ref|YP_001154291.1| - 0.00036 19.9 0.1 0.00052 19.4 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase TFIIF_beta PF02270.15 gi|145592289|ref|YP_001154291.1| - 0.0018 18.3 0.4 2.7 8.2 0.0 2.6 2 0 0 2 2 2 2 TFIIF, beta subunit HTH domain Cys_Met_Meta_PP PF01053.20 gi|145592289|ref|YP_001154291.1| - 0.0025 16.4 0.1 0.0035 15.9 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme PIG-F PF06699.11 gi|145592290|ref|YP_001154292.1| - 0.022 14.9 1.5 0.025 14.8 1.5 1.1 1 0 0 1 1 1 0 GPI biosynthesis protein family Pig-F RBP_receptor PF14752.6 gi|145592290|ref|YP_001154292.1| - 0.048 12.2 1.7 0.058 12.0 1.7 1.2 1 0 0 1 1 1 0 Retinol binding protein receptor CPBP PF02517.16 gi|145592290|ref|YP_001154292.1| - 7.9 6.9 8.0 17 5.8 6.5 2.2 1 1 1 2 2 2 0 CPBP intramembrane metalloprotease FeS_assembly_P PF01883.19 gi|145592291|ref|YP_001154293.1| - 6.8e-18 64.6 2.4 8.6e-18 64.3 2.4 1.1 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein BET PF17035.5 gi|145592291|ref|YP_001154293.1| - 0.094 12.9 0.0 20 5.5 0.0 2.2 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation TusA PF01206.17 gi|145592292|ref|YP_001154294.1| - 2e-11 43.6 0.0 2.2e-11 43.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|145592292|ref|YP_001154294.1| - 0.018 14.9 0.0 0.02 14.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) HMGL-like PF00682.19 gi|145592293|ref|YP_001154295.1| - 1.7e-41 142.6 0.0 2.8e-41 141.8 0.0 1.4 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|145592293|ref|YP_001154295.1| - 1.3e-27 96.3 0.0 2.7e-27 95.3 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain PEP_mutase PF13714.6 gi|145592293|ref|YP_001154295.1| - 0.0042 16.6 0.2 0.023 14.2 0.0 2.0 2 0 0 2 2 2 1 Phosphoenolpyruvate phosphomutase 4HBT_2 PF13279.6 gi|145592294|ref|YP_001154296.1| - 3.1e-06 27.7 0.0 4.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|145592294|ref|YP_001154296.1| - 1e-05 25.8 0.1 1.5e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily EutK_C PF16365.5 gi|145592294|ref|YP_001154296.1| - 0.049 13.7 1.6 0.21 11.6 0.6 2.2 1 1 1 2 2 2 0 Ethanolamine utilization protein EutK C-terminus VWA_CoxE PF05762.14 gi|145592295|ref|YP_001154297.1| - 2.3e-09 37.0 0.1 4.5e-09 36.0 0.1 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_2 PF13519.6 gi|145592295|ref|YP_001154297.1| - 1.4e-05 25.7 0.0 5.7e-05 23.7 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|145592295|ref|YP_001154297.1| - 0.035 14.4 0.0 0.15 12.3 0.0 1.9 1 1 0 1 1 1 0 von Willebrand factor type A domain Acyl-CoA_dh_1 PF00441.24 gi|145592299|ref|YP_001154301.1| - 1.3e-34 119.6 2.7 1.9e-34 119.1 2.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|145592299|ref|YP_001154301.1| - 3.5e-22 79.2 0.5 9.9e-22 77.7 0.1 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|145592299|ref|YP_001154301.1| - 4.7e-18 65.2 0.0 8.6e-18 64.3 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|145592299|ref|YP_001154301.1| - 1.1e-15 58.1 1.9 1.7e-15 57.5 1.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Pribosyltran PF00156.27 gi|145592300|ref|YP_001154302.1| - 3.2e-12 46.3 0.1 5.7e-12 45.4 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|145592300|ref|YP_001154302.1| - 4e-06 26.8 0.1 8e-06 25.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix RNase_HII PF01351.18 gi|145592300|ref|YP_001154302.1| - 0.13 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Ribonuclease HII CBS PF00571.28 gi|145592301|ref|YP_001154303.1| - 1.1e-23 83.4 1.3 6.4e-12 45.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|145592301|ref|YP_001154303.1| - 0.0035 17.4 1.1 0.54 10.4 0.1 2.2 2 0 0 2 2 2 2 Toluene-4-monooxygenase system protein B (TmoB) ASCH PF04266.14 gi|145592301|ref|YP_001154303.1| - 0.04 14.5 0.2 5.2 7.7 0.0 2.1 1 1 1 2 2 2 0 ASCH domain PRC PF05239.16 gi|145592301|ref|YP_001154303.1| - 0.12 12.5 0.0 1.7 8.8 0.0 2.1 2 0 0 2 2 2 0 PRC-barrel domain IF3_N PF05198.16 gi|145592301|ref|YP_001154303.1| - 0.15 12.4 0.9 0.57 10.5 0.1 2.2 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain QueC PF06508.13 gi|145592302|ref|YP_001154304.1| - 1.7e-37 129.0 0.3 2.6e-37 128.4 0.3 1.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|145592302|ref|YP_001154304.1| - 2.4e-05 24.0 0.0 3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) PTS_EIIA_1 PF00358.20 gi|145592302|ref|YP_001154304.1| - 0.0055 16.5 0.0 0.0086 15.8 0.0 1.2 1 0 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FeoB_associated PF12669.7 gi|145592302|ref|YP_001154304.1| - 5.6 7.5 7.2 0.96 9.9 1.3 2.4 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein DAHP_synth_1 PF00793.20 gi|145592303|ref|YP_001154305.1| - 4.2e-69 232.5 0.0 5.7e-69 232.0 0.0 1.0 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|145592303|ref|YP_001154305.1| - 3.6e-06 26.6 0.0 5.8e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 NeuB family EspB_PE PF18625.1 gi|145592303|ref|YP_001154305.1| - 0.13 12.8 0.2 1.1 9.8 0.0 2.5 3 0 0 3 3 3 0 ESX-1 secreted protein B PE domain NdhM PF10664.9 gi|145592303|ref|YP_001154305.1| - 0.14 12.5 0.0 0.26 11.6 0.0 1.4 1 0 0 1 1 1 0 Cyanobacterial and plastid NDH-1 subunit M tRNA-synt_1b PF00579.25 gi|145592304|ref|YP_001154306.1| - 1.4e-41 142.8 0.0 2.2e-39 135.6 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Transketolase_N PF00456.21 gi|145592305|ref|YP_001154307.1| - 4.1e-40 137.8 0.1 1e-39 136.5 0.1 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|145592305|ref|YP_001154307.1| - 1.1e-13 51.1 0.1 1.3e-08 34.4 0.1 2.8 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|145592305|ref|YP_001154307.1| - 3e-09 36.8 1.0 1.6e-07 31.2 0.1 3.0 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|145592305|ref|YP_001154307.1| - 8.3e-08 31.5 0.0 9.9e-08 31.3 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.10 gi|145592305|ref|YP_001154307.1| - 0.00047 19.1 0.1 0.00092 18.1 0.1 1.4 1 1 1 2 2 2 1 XFP N-terminal domain Transket_pyr PF02779.24 gi|145592306|ref|YP_001154308.1| - 9.6e-34 116.6 0.1 3.3e-33 114.9 0.1 1.7 2 0 0 2 2 2 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|145592306|ref|YP_001154308.1| - 1.1e-27 96.4 0.0 2e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|145592306|ref|YP_001154308.1| - 0.0027 18.0 0.0 0.0054 17.0 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II HCV_NS4a PF01006.20 gi|145592306|ref|YP_001154308.1| - 0.84 9.4 3.0 14 5.5 1.5 2.6 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a DHQ_synthase PF01761.20 gi|145592307|ref|YP_001154309.1| - 2e-89 299.2 0.0 2.4e-89 299.0 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|145592307|ref|YP_001154309.1| - 4.2e-07 29.9 0.0 1.4e-06 28.2 0.0 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|145592307|ref|YP_001154309.1| - 8.5e-05 21.5 0.4 0.025 13.4 0.1 2.3 2 1 0 2 2 2 2 Iron-containing alcohol dehydrogenase EPSP_synthase PF00275.20 gi|145592308|ref|YP_001154310.1| - 7e-59 199.6 0.0 9e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DIM PF08194.12 gi|145592308|ref|YP_001154310.1| - 0.48 10.7 9.7 20 5.5 0.5 4.5 5 0 0 5 5 5 0 DIM protein Epimerase PF01370.21 gi|145592309|ref|YP_001154311.1| - 3.1e-54 184.0 0.0 3.7e-54 183.8 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|145592309|ref|YP_001154311.1| - 4.9e-46 157.7 0.0 7e-46 157.1 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|145592309|ref|YP_001154311.1| - 3.3e-18 65.7 0.0 5.1e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|145592309|ref|YP_001154311.1| - 1.2e-16 60.7 0.1 1.8e-15 56.9 0.1 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|145592309|ref|YP_001154311.1| - 9.2e-16 57.8 0.0 1.1e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|145592309|ref|YP_001154311.1| - 1.8e-10 40.4 0.2 9.1e-06 25.0 0.0 2.5 2 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|145592309|ref|YP_001154311.1| - 8.1e-06 25.4 0.0 0.00033 20.2 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_10 PF13460.6 gi|145592309|ref|YP_001154311.1| - 1.9e-05 24.6 0.1 4.6e-05 23.4 0.1 1.6 1 1 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|145592309|ref|YP_001154311.1| - 0.0039 17.1 0.1 0.012 15.6 0.0 1.7 2 0 0 2 2 2 1 KR domain NmrA PF05368.13 gi|145592309|ref|YP_001154311.1| - 0.019 14.6 0.1 0.032 13.8 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family PAC2 PF09754.9 gi|145592309|ref|YP_001154311.1| - 0.031 14.3 0.0 0.047 13.7 0.0 1.4 1 1 0 1 1 1 0 PAC2 family DapB_N PF01113.20 gi|145592309|ref|YP_001154311.1| - 0.036 14.2 0.1 0.065 13.4 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.18 gi|145592309|ref|YP_001154311.1| - 0.041 14.2 0.1 0.084 13.1 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_2 PF03446.15 gi|145592309|ref|YP_001154311.1| - 0.043 14.0 0.0 0.086 13.0 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|145592309|ref|YP_001154311.1| - 0.057 13.0 0.0 0.094 12.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|145592309|ref|YP_001154311.1| - 0.078 13.6 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Glyco_trans_4_4 PF13579.6 gi|145592309|ref|YP_001154311.1| - 0.08 13.4 0.2 0.16 12.4 0.2 1.5 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain 3HCDH_N PF02737.18 gi|145592309|ref|YP_001154311.1| - 0.085 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_N PF08240.12 gi|145592310|ref|YP_001154312.1| - 1.9e-31 108.2 0.2 3.5e-31 107.3 0.2 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|145592310|ref|YP_001154312.1| - 1.1e-21 77.2 0.1 1.6e-21 76.6 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|145592310|ref|YP_001154312.1| - 4.6e-07 31.0 0.0 8.3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Hydantoinase_A PF01968.18 gi|145592310|ref|YP_001154312.1| - 0.034 13.4 0.2 0.048 12.9 0.2 1.1 1 0 0 1 1 1 0 Hydantoinase/oxoprolinase adh_short PF00106.25 gi|145592310|ref|YP_001154312.1| - 0.035 13.6 0.9 0.051 13.0 0.9 1.3 1 0 0 1 1 1 0 short chain dehydrogenase AlaDh_PNT_C PF01262.21 gi|145592310|ref|YP_001154312.1| - 0.038 13.3 3.5 0.061 12.6 3.5 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|145592310|ref|YP_001154312.1| - 0.079 12.4 0.3 0.19 11.1 0.2 1.6 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family PhoH PF02562.16 gi|145592311|ref|YP_001154313.1| - 1.1e-51 175.2 0.0 1.7e-51 174.6 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|145592311|ref|YP_001154313.1| - 8.8e-13 47.9 1.2 4.7e-10 39.2 0.2 2.5 1 1 1 2 2 2 2 KH domain KH_1 PF00013.29 gi|145592311|ref|YP_001154313.1| - 7.8e-06 25.6 0.6 0.0026 17.5 0.1 2.4 2 0 0 2 2 2 2 KH domain KH_5 PF13184.6 gi|145592311|ref|YP_001154313.1| - 5.3e-05 23.2 0.1 0.046 13.8 0.0 2.6 2 0 0 2 2 2 2 NusA-like KH domain IstB_IS21 PF01695.17 gi|145592311|ref|YP_001154313.1| - 8.5e-05 22.4 0.0 0.00016 21.4 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|145592311|ref|YP_001154313.1| - 0.00047 20.5 0.0 0.001 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|145592311|ref|YP_001154313.1| - 0.032 13.9 0.0 0.062 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain KH_4 PF13083.6 gi|145592311|ref|YP_001154313.1| - 0.061 13.2 1.4 3.3 7.7 0.6 2.5 2 0 0 2 2 2 0 KH domain ABC_tran PF00005.27 gi|145592311|ref|YP_001154313.1| - 0.091 13.3 0.0 0.33 11.5 0.0 1.9 2 0 0 2 2 2 0 ABC transporter NUDIX PF00293.28 gi|145592312|ref|YP_001154314.1| - 1.6e-22 79.9 0.2 2.1e-22 79.6 0.2 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|145592312|ref|YP_001154314.1| - 0.0025 17.8 0.0 0.0033 17.4 0.0 1.3 1 1 0 1 1 1 1 NUDIX domain dCache_3 PF14827.6 gi|145592312|ref|YP_001154314.1| - 0.028 14.1 0.0 0.045 13.4 0.0 1.3 1 0 0 1 1 1 0 Double sensory domain of two-component sensor kinase DUF4916 PF16262.5 gi|145592312|ref|YP_001154314.1| - 0.066 12.7 0.1 0.37 10.3 0.1 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4916) P5CR_dimer PF14748.6 gi|145592313|ref|YP_001154315.1| - 1.5e-18 66.9 0.0 2.4e-18 66.3 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|145592313|ref|YP_001154315.1| - 8.3e-10 39.1 1.1 2.2e-09 37.8 0.1 2.2 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|145592313|ref|YP_001154315.1| - 5.7e-07 29.1 0.0 1.1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|145592313|ref|YP_001154315.1| - 6.3e-07 29.7 0.1 3.9e-06 27.1 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Rossmann-like PF10727.9 gi|145592313|ref|YP_001154315.1| - 0.00038 20.3 1.7 0.00047 20.0 0.1 1.9 3 0 0 3 3 3 1 Rossmann-like domain Shikimate_DH PF01488.20 gi|145592313|ref|YP_001154315.1| - 0.001 19.1 0.1 0.0042 17.1 0.0 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.12 gi|145592313|ref|YP_001154315.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DapB_N PF01113.20 gi|145592313|ref|YP_001154315.1| - 0.016 15.3 0.1 0.03 14.4 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.16 gi|145592313|ref|YP_001154315.1| - 0.025 14.2 0.3 0.051 13.2 0.3 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|145592313|ref|YP_001154315.1| - 0.038 13.9 0.1 0.087 12.7 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|145592313|ref|YP_001154315.1| - 0.056 14.3 0.0 0.14 13.0 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.23 gi|145592313|ref|YP_001154315.1| - 0.35 10.8 2.3 2.9 7.9 0.9 2.8 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Shikimate_dh_N PF08501.11 gi|145592314|ref|YP_001154316.1| - 2.8e-26 91.6 0.0 7.5e-26 90.2 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|145592314|ref|YP_001154316.1| - 2.5e-10 39.9 0.1 5.3e-10 38.9 0.1 1.6 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|145592314|ref|YP_001154316.1| - 5.2e-10 39.5 0.0 8.5e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|145592314|ref|YP_001154316.1| - 8.9e-06 26.2 0.2 2.9e-05 24.6 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent OCD_Mu_crystall PF02423.15 gi|145592314|ref|YP_001154316.1| - 0.00028 20.0 0.3 0.00038 19.5 0.3 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family AlaDh_PNT_C PF01262.21 gi|145592314|ref|YP_001154316.1| - 0.016 14.5 0.7 0.033 13.5 0.7 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Sacchrp_dh_NADP PF03435.18 gi|145592314|ref|YP_001154316.1| - 0.027 14.8 0.2 0.071 13.4 0.2 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|145592314|ref|YP_001154316.1| - 0.035 14.9 0.1 0.11 13.4 0.1 1.9 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Chorismate_synt PF01264.21 gi|145592315|ref|YP_001154317.1| - 1.6e-117 391.9 0.0 1.8e-117 391.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Complex1_49kDa PF00346.19 gi|145592316|ref|YP_001154318.1| - 7.9e-77 258.0 0.0 9.6e-77 257.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Glycos_transf_2 PF00535.26 gi|145592317|ref|YP_001154319.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 GTP_cyclohydroI PF01227.22 gi|145592318|ref|YP_001154320.1| - 9.4e-47 158.7 0.0 1.2e-46 158.4 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I CobW_C PF07683.14 gi|145592318|ref|YP_001154320.1| - 0.13 12.2 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Cobalamin synthesis protein cobW C-terminal domain adh_short_C2 PF13561.6 gi|145592319|ref|YP_001154321.1| - 1.2e-42 146.1 0.1 4.3e-42 144.3 0.1 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145592319|ref|YP_001154321.1| - 1e-26 93.6 0.1 4.9e-26 91.4 0.1 1.8 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145592319|ref|YP_001154321.1| - 1e-06 28.8 0.4 9.7e-05 22.4 0.4 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|145592319|ref|YP_001154321.1| - 5.4e-06 26.0 0.1 1.4e-05 24.7 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|145592319|ref|YP_001154321.1| - 0.00068 19.6 0.1 0.0018 18.2 0.0 1.7 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|145592319|ref|YP_001154321.1| - 0.018 14.2 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain LDcluster4 PF18306.1 gi|145592319|ref|YP_001154321.1| - 0.033 13.8 0.2 0.099 12.2 0.0 1.8 2 0 0 2 2 2 0 SLOG cluster4 family DapB_N PF01113.20 gi|145592319|ref|YP_001154321.1| - 0.068 13.3 0.0 0.12 12.5 0.0 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.26 gi|145592319|ref|YP_001154321.1| - 0.08 12.9 0.1 0.28 11.2 0.1 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase CarboxypepD_reg PF13620.6 gi|145592320|ref|YP_001154322.1| - 0.017 15.4 4.0 3.2 8.1 0.3 3.2 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain B277 PF17623.2 gi|145592320|ref|YP_001154322.1| - 0.13 11.3 1.1 2.9 6.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function MarR_2 PF12802.7 gi|145592321|ref|YP_001154323.1| - 1.1e-08 34.8 0.4 2e-08 34.0 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|145592321|ref|YP_001154323.1| - 6.8e-06 26.0 0.1 1.3e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|145592321|ref|YP_001154323.1| - 3.9e-05 23.1 0.9 6.7e-05 22.4 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145592321|ref|YP_001154323.1| - 4.3e-05 23.3 0.1 0.0001 22.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family AsnC_trans_reg PF01037.21 gi|145592321|ref|YP_001154323.1| - 8.1e-05 22.5 0.1 0.00061 19.7 0.1 2.3 2 1 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|145592321|ref|YP_001154323.1| - 0.00013 21.9 0.3 0.00031 20.7 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RP-C PF03428.13 gi|145592321|ref|YP_001154323.1| - 0.00068 19.3 0.1 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 Replication protein C N-terminal domain LexA_DNA_bind PF01726.16 gi|145592321|ref|YP_001154323.1| - 0.0076 16.0 2.2 0.063 13.1 2.2 2.2 1 1 0 1 1 1 1 LexA DNA binding domain HTH_11 PF08279.12 gi|145592321|ref|YP_001154323.1| - 0.014 15.3 1.2 0.02 14.8 0.1 1.9 2 0 0 2 2 2 0 HTH domain MarR PF01047.22 gi|145592321|ref|YP_001154323.1| - 0.024 14.6 0.1 0.038 13.9 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_8 PF02954.19 gi|145592321|ref|YP_001154323.1| - 0.036 13.8 0.3 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_27 PF13463.6 gi|145592321|ref|YP_001154323.1| - 0.037 14.5 0.7 0.17 12.4 0.7 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|145592321|ref|YP_001154323.1| - 0.038 13.7 0.0 0.13 12.0 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|145592321|ref|YP_001154323.1| - 0.061 13.1 1.3 0.29 11.0 1.3 2.0 1 1 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|145592321|ref|YP_001154323.1| - 0.071 13.0 0.4 0.9 9.5 0.1 2.6 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|145592321|ref|YP_001154323.1| - 0.13 12.1 0.5 2.3 8.1 0.1 2.5 2 0 0 2 2 2 0 HTH DNA binding domain HTH_45 PF14947.6 gi|145592322|ref|YP_001154324.1| - 0.0011 18.9 0.8 0.0038 17.2 0.0 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix Peptidase_M1 PF01433.20 gi|145592323|ref|YP_001154325.1| - 6.2e-49 166.5 0.3 1.1e-48 165.7 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|145592323|ref|YP_001154325.1| - 2.3e-44 149.7 23.7 3.5e-14 53.0 1.1 4.0 1 1 4 5 5 5 5 HEAT repeats Peptidase_M1_N PF17900.1 gi|145592323|ref|YP_001154325.1| - 1.2e-16 61.4 0.0 2.4e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|145592323|ref|YP_001154325.1| - 1e-10 41.2 16.4 0.12 13.2 0.8 6.7 6 0 0 6 6 6 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|145592323|ref|YP_001154325.1| - 6.2e-09 35.4 4.5 1.1 9.8 0.0 6.6 6 0 0 6 6 6 1 HEAT repeat DUF3857 PF12969.7 gi|145592323|ref|YP_001154325.1| - 0.0021 18.2 0.4 0.0046 17.1 0.4 1.5 1 0 0 1 1 1 1 Domain of Unknown Function with PDB structure (DUF3857) DUF4200 PF13863.6 gi|145592323|ref|YP_001154325.1| - 0.018 15.5 2.8 0.038 14.4 2.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Vitellogenin_N PF01347.22 gi|145592323|ref|YP_001154325.1| - 0.02 13.3 0.0 1.6 7.0 0.0 2.1 1 1 1 2 2 2 0 Lipoprotein amino terminal region TSC22 PF01166.18 gi|145592323|ref|YP_001154325.1| - 0.45 10.9 3.1 0.9 9.9 2.5 1.8 2 0 0 2 2 2 0 TSC-22/dip/bun family BMFP PF04380.13 gi|145592323|ref|YP_001154325.1| - 7 7.2 7.9 25 5.5 6.6 2.6 2 1 0 2 2 2 0 Membrane fusogenic activity UPRTase PF14681.6 gi|145592324|ref|YP_001154326.1| - 3.9e-53 180.0 0.0 4.4e-53 179.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|145592324|ref|YP_001154326.1| - 1.8e-08 34.1 0.8 2.6e-08 33.5 0.8 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Peptidase_A24 PF01478.18 gi|145592325|ref|YP_001154327.1| - 0.0019 18.6 5.0 0.0019 18.6 5.0 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family Arc_PepC_II PF06847.11 gi|145592325|ref|YP_001154327.1| - 0.19 12.2 0.1 0.19 12.2 0.1 1.8 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II DUF4131 PF13567.6 gi|145592325|ref|YP_001154327.1| - 9.8 5.8 7.4 6.8 6.3 3.1 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) bact-PGI_C PF10432.9 gi|145592326|ref|YP_001154328.1| - 1.2e-16 61.2 0.1 4e-16 59.4 0.1 1.9 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|145592326|ref|YP_001154328.1| - 3.1e-06 27.1 0.0 3.3e-05 23.7 0.0 2.3 1 1 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|145592326|ref|YP_001154328.1| - 0.0021 18.1 0.1 0.0058 16.6 0.0 1.7 2 0 0 2 2 2 1 SIS domain RNA_pol_RpbG PF16992.5 gi|145592327|ref|YP_001154329.1| - 0.015 15.4 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 DNA-directed RNA polymerase, subunit G PilZ PF07238.14 gi|145592327|ref|YP_001154329.1| - 0.044 14.1 0.2 3.5 8.0 0.0 2.2 1 1 0 2 2 2 0 PilZ domain TF_Zn_Ribbon PF08271.12 gi|145592328|ref|YP_001154330.1| - 8.5e-08 31.6 1.7 1.4e-07 30.9 1.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|145592328|ref|YP_001154330.1| - 2.7e-07 30.5 0.4 5.1e-07 29.6 0.4 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat zf-RRN7 PF11781.8 gi|145592328|ref|YP_001154330.1| - 1.4e-05 24.7 0.5 2e-05 24.2 0.5 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 A2L_zn_ribbon PF08792.10 gi|145592328|ref|YP_001154330.1| - 0.00045 19.9 1.1 0.0007 19.2 1.1 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145592328|ref|YP_001154330.1| - 0.0011 18.3 0.6 0.0021 17.4 0.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Cyclin_C PF02984.19 gi|145592328|ref|YP_001154330.1| - 0.0052 16.9 0.5 0.13 12.3 0.0 2.4 3 0 0 3 3 3 1 Cyclin, C-terminal domain zinc_ribbon_10 PF10058.9 gi|145592328|ref|YP_001154330.1| - 0.0083 15.8 1.3 0.022 14.5 1.3 1.7 1 1 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein HTH_23 PF13384.6 gi|145592328|ref|YP_001154330.1| - 0.015 15.1 0.3 2.8 7.8 0.1 2.7 1 1 1 2 2 2 0 Homeodomain-like domain OrfB_Zn_ribbon PF07282.11 gi|145592328|ref|YP_001154330.1| - 0.021 14.7 0.3 0.048 13.6 0.3 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RPA_interact_C PF14768.6 gi|145592328|ref|YP_001154330.1| - 0.023 15.2 0.1 0.032 14.8 0.1 1.4 1 0 0 1 1 1 0 Replication protein A interacting C-terminal HTH_Crp_2 PF13545.6 gi|145592328|ref|YP_001154330.1| - 0.023 14.6 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain T4_baseplate PF12322.8 gi|145592328|ref|YP_001154330.1| - 0.046 13.2 0.5 0.1 12.0 0.5 1.5 1 1 0 1 1 1 0 T4 bacteriophage base plate protein DUF35_N PF12172.8 gi|145592328|ref|YP_001154330.1| - 0.064 13.1 0.5 4.1 7.4 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HTH_36 PF13730.6 gi|145592328|ref|YP_001154330.1| - 0.097 12.6 1.4 3.8 7.5 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain GerE PF00196.19 gi|145592328|ref|YP_001154330.1| - 0.097 12.2 0.0 6 6.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|145592328|ref|YP_001154330.1| - 0.12 12.8 0.2 1.4 9.3 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator zf-Mss51 PF13824.6 gi|145592328|ref|YP_001154330.1| - 0.14 12.3 0.3 0.3 11.2 0.3 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 HTH_38 PF13936.6 gi|145592328|ref|YP_001154330.1| - 1.1 9.1 4.1 19 5.1 0.3 3.3 3 1 0 3 3 3 0 Helix-turn-helix domain T2SSE PF00437.20 gi|145592329|ref|YP_001154331.1| - 6.5e-24 84.4 0.0 9.2e-24 83.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|145592329|ref|YP_001154331.1| - 1.9e-06 28.4 0.0 5.6e-06 26.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_16 PF13191.6 gi|145592329|ref|YP_001154331.1| - 2.9e-05 24.5 0.0 8.1e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|145592329|ref|YP_001154331.1| - 5.8e-05 22.9 0.0 0.00015 21.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|145592329|ref|YP_001154331.1| - 0.00044 20.5 0.2 0.0062 16.8 0.1 2.4 1 1 1 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|145592329|ref|YP_001154331.1| - 0.00074 19.5 0.0 0.0039 17.1 0.0 2.2 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|145592329|ref|YP_001154331.1| - 0.0008 20.0 0.0 0.0018 18.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|145592329|ref|YP_001154331.1| - 0.0012 18.8 0.1 0.017 15.1 0.0 2.9 5 0 0 5 5 3 1 NACHT domain AAA_29 PF13555.6 gi|145592329|ref|YP_001154331.1| - 0.0014 18.3 0.0 0.003 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Mg_chelatase PF01078.21 gi|145592329|ref|YP_001154331.1| - 0.0017 17.8 0.0 0.0033 16.8 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|145592329|ref|YP_001154331.1| - 0.0028 18.1 0.5 0.012 16.0 0.5 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|145592329|ref|YP_001154331.1| - 0.0034 17.4 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|145592329|ref|YP_001154331.1| - 0.0037 17.2 0.0 0.01 15.7 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|145592329|ref|YP_001154331.1| - 0.0042 17.0 0.1 0.035 14.0 0.0 2.3 1 1 1 2 2 2 1 NTPase AAA_19 PF13245.6 gi|145592329|ref|YP_001154331.1| - 0.0072 16.7 0.1 0.018 15.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|145592329|ref|YP_001154331.1| - 0.0072 16.1 0.0 0.035 13.8 0.0 2.1 2 1 0 2 2 2 1 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|145592329|ref|YP_001154331.1| - 0.0072 15.6 0.0 0.035 13.4 0.0 2.1 1 1 0 1 1 1 1 Zeta toxin AAA_11 PF13086.6 gi|145592329|ref|YP_001154331.1| - 0.0078 16.0 0.0 0.023 14.5 0.0 1.7 2 1 0 2 2 1 1 AAA domain AAA_28 PF13521.6 gi|145592329|ref|YP_001154331.1| - 0.0078 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|145592329|ref|YP_001154331.1| - 0.0086 15.7 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DEAD PF00270.29 gi|145592329|ref|YP_001154331.1| - 0.0095 15.7 0.2 0.26 11.0 0.0 2.6 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|145592329|ref|YP_001154331.1| - 0.017 15.2 0.1 0.064 13.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain RNA12 PF10443.9 gi|145592329|ref|YP_001154331.1| - 0.021 13.6 0.0 0.037 12.8 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein AAA_24 PF13479.6 gi|145592329|ref|YP_001154331.1| - 0.022 14.5 0.2 0.14 11.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|145592329|ref|YP_001154331.1| - 0.024 15.1 0.7 0.06 13.8 0.1 2.0 2 1 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|145592329|ref|YP_001154331.1| - 0.025 13.8 0.0 0.04 13.1 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain RuvB_N PF05496.12 gi|145592329|ref|YP_001154331.1| - 0.026 14.3 0.1 0.096 12.4 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain PhoH PF02562.16 gi|145592329|ref|YP_001154331.1| - 0.03 13.8 0.0 1.9 7.9 0.0 2.4 2 0 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|145592329|ref|YP_001154331.1| - 0.036 13.6 0.0 0.083 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|145592329|ref|YP_001154331.1| - 0.052 13.5 0.0 0.12 12.2 0.0 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_17 PF13207.6 gi|145592329|ref|YP_001154331.1| - 0.062 13.7 0.0 0.17 12.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain dNK PF01712.19 gi|145592329|ref|YP_001154331.1| - 0.073 12.9 0.2 7.2 6.4 0.0 2.4 1 1 1 2 2 2 0 Deoxynucleoside kinase DLIC PF05783.11 gi|145592329|ref|YP_001154331.1| - 0.076 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_5 PF07728.14 gi|145592329|ref|YP_001154331.1| - 0.078 13.0 0.0 0.25 11.3 0.0 1.9 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|145592329|ref|YP_001154331.1| - 0.089 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Viral_helicase1 PF01443.18 gi|145592329|ref|YP_001154331.1| - 0.09 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_21 PF13304.6 gi|145592329|ref|YP_001154331.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system DUF4070 PF13282.6 gi|145592330|ref|YP_001154332.1| - 0.0054 16.9 0.2 0.008 16.3 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4070) HECW1_helix PF18436.1 gi|145592330|ref|YP_001154332.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Helical box domain of E3 ubiquitin-protein ligase HECW1 Cpn60_TCP1 PF00118.24 gi|145592331|ref|YP_001154333.1| - 2.6e-176 587.0 10.1 3e-176 586.8 10.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Dak2 PF02734.17 gi|145592331|ref|YP_001154333.1| - 0.00023 21.1 1.2 0.092 12.6 0.8 2.5 2 0 0 2 2 2 2 DAK2 domain Peripla_BP_2 PF01497.18 gi|145592332|ref|YP_001154334.1| - 8.8e-25 87.6 0.0 1.4e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Baculo_PEP_C PF04513.12 gi|145592332|ref|YP_001154334.1| - 0.0073 16.4 3.1 0.015 15.3 3.1 1.4 1 0 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|145592332|ref|YP_001154334.1| - 0.028 14.3 0.6 0.064 13.1 0.6 1.6 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Pil1 PF13805.6 gi|145592332|ref|YP_001154334.1| - 0.064 12.7 0.1 0.087 12.3 0.1 1.2 1 0 0 1 1 1 0 Eisosome component PIL1 DUF1664 PF07889.12 gi|145592332|ref|YP_001154334.1| - 0.11 12.5 0.5 0.21 11.6 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.11 gi|145592332|ref|YP_001154334.1| - 0.49 10.8 2.0 0.6 10.5 0.5 1.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) FecCD PF01032.18 gi|145592333|ref|YP_001154335.1| - 1.9e-58 197.9 31.1 2.3e-58 197.7 31.1 1.1 1 0 0 1 1 1 1 FecCD transport family DUF3948 PF13134.6 gi|145592333|ref|YP_001154335.1| - 0.011 15.4 0.9 0.043 13.5 0.9 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3948) ABC_tran PF00005.27 gi|145592334|ref|YP_001154336.1| - 3e-20 73.1 0.0 6.8e-20 72.0 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145592334|ref|YP_001154336.1| - 3.7e-15 56.5 0.0 2e-06 27.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145592334|ref|YP_001154336.1| - 9.7e-09 35.0 0.0 0.0033 16.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|145592334|ref|YP_001154336.1| - 9.2e-08 32.2 0.0 0.00092 19.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.6 gi|145592334|ref|YP_001154336.1| - 0.0001 22.9 0.1 0.00016 22.2 0.1 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|145592334|ref|YP_001154336.1| - 0.00042 20.5 0.0 0.0094 16.2 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|145592334|ref|YP_001154336.1| - 0.0008 19.6 0.8 0.01 16.0 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|145592334|ref|YP_001154336.1| - 0.0015 18.3 0.1 0.0034 17.1 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|145592334|ref|YP_001154336.1| - 0.0015 18.2 0.1 0.0033 17.2 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|145592334|ref|YP_001154336.1| - 0.0051 17.2 0.5 0.11 12.9 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|145592334|ref|YP_001154336.1| - 0.0054 17.2 0.3 0.017 15.6 0.3 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|145592334|ref|YP_001154336.1| - 0.0091 15.9 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 NACHT domain Mg_chelatase PF01078.21 gi|145592334|ref|YP_001154336.1| - 0.012 15.0 0.1 0.22 10.9 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.6 gi|145592334|ref|YP_001154336.1| - 0.015 15.6 0.2 0.038 14.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|145592334|ref|YP_001154336.1| - 0.016 15.7 0.0 0.052 14.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|145592334|ref|YP_001154336.1| - 0.032 14.2 0.2 0.072 13.1 0.2 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.6 gi|145592334|ref|YP_001154336.1| - 0.032 14.5 0.1 0.12 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|145592334|ref|YP_001154336.1| - 0.042 13.5 0.1 0.081 12.5 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|145592334|ref|YP_001154336.1| - 0.062 11.9 0.0 0.085 11.5 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|145592334|ref|YP_001154336.1| - 0.068 12.0 0.7 1.6 7.5 0.1 2.4 2 1 1 3 3 3 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|145592334|ref|YP_001154336.1| - 0.073 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase NTPase_1 PF03266.15 gi|145592334|ref|YP_001154336.1| - 0.083 12.8 0.1 1.6 8.6 0.1 2.1 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|145592334|ref|YP_001154336.1| - 0.091 13.2 0.0 0.23 11.8 0.0 1.8 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 gi|145592334|ref|YP_001154336.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Rad17 PF03215.15 gi|145592334|ref|YP_001154336.1| - 0.11 12.4 0.0 0.61 10.0 0.0 1.9 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|145592334|ref|YP_001154336.1| - 0.11 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain VirE PF05272.11 gi|145592334|ref|YP_001154336.1| - 0.14 11.9 0.0 6.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Virulence-associated protein E ATP_bind_1 PF03029.17 gi|145592334|ref|YP_001154336.1| - 0.15 11.9 0.1 0.25 11.1 0.1 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|145592334|ref|YP_001154336.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B TniB PF05621.11 gi|145592334|ref|YP_001154336.1| - 0.18 11.2 0.0 0.81 9.1 0.0 1.8 1 1 1 2 2 2 0 Bacterial TniB protein cobW PF02492.19 gi|145592334|ref|YP_001154336.1| - 0.2 11.3 0.1 0.39 10.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.6 gi|145592334|ref|YP_001154336.1| - 0.22 11.6 0.0 1.3 9.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF3584 PF12128.8 gi|145592334|ref|YP_001154336.1| - 0.32 8.5 0.1 0.42 8.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) GTP_EFTU PF00009.27 gi|145592335|ref|YP_001154337.1| - 4.6e-58 196.0 0.0 6.8e-58 195.4 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|145592335|ref|YP_001154337.1| - 2e-30 105.0 0.1 1.2e-29 102.5 0.0 2.3 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|145592335|ref|YP_001154337.1| - 7.5e-23 80.4 0.1 1.6e-22 79.4 0.1 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|145592335|ref|YP_001154337.1| - 1.1e-19 70.3 0.0 3e-19 68.8 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|145592335|ref|YP_001154337.1| - 4.7e-16 59.0 0.3 1.1e-15 57.7 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|145592335|ref|YP_001154337.1| - 0.042 13.9 0.0 0.092 12.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RF3_C PF16658.5 gi|145592335|ref|YP_001154337.1| - 0.09 12.6 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SBP_bac_6 PF13343.6 gi|145592336|ref|YP_001154338.1| - 3.6e-21 75.7 0.0 7.1e-21 74.7 0.0 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|145592336|ref|YP_001154338.1| - 9.7e-17 61.7 0.0 1.8e-16 60.8 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|145592336|ref|YP_001154338.1| - 4.7e-14 53.1 0.0 8.9e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|145592336|ref|YP_001154338.1| - 2.4e-12 47.1 0.0 4.3e-12 46.3 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|145592338|ref|YP_001154340.1| - 5.6e-36 124.1 0.0 8.6e-36 123.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145592338|ref|YP_001154340.1| - 1.7e-11 44.5 0.0 3.3e-05 23.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|145592338|ref|YP_001154340.1| - 5.6e-05 22.8 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|145592338|ref|YP_001154340.1| - 0.00013 22.4 0.1 0.00024 21.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|145592338|ref|YP_001154340.1| - 0.0004 19.9 0.0 0.45 9.9 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|145592338|ref|YP_001154340.1| - 0.01 15.9 0.0 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|145592338|ref|YP_001154340.1| - 0.011 16.0 0.1 0.023 14.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|145592338|ref|YP_001154340.1| - 0.018 14.8 0.0 0.059 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|145592338|ref|YP_001154340.1| - 0.025 14.8 0.3 0.073 13.2 0.3 2.0 1 1 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|145592338|ref|YP_001154340.1| - 0.037 13.8 0.6 0.079 12.7 0.6 1.6 1 1 0 1 1 1 0 Cytidylate kinase AAA_28 PF13521.6 gi|145592338|ref|YP_001154340.1| - 0.045 14.0 0.0 0.24 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|145592338|ref|YP_001154340.1| - 0.048 12.7 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|145592338|ref|YP_001154340.1| - 0.053 13.4 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|145592338|ref|YP_001154340.1| - 0.063 13.7 0.0 0.16 12.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|145592338|ref|YP_001154340.1| - 0.063 13.8 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|145592338|ref|YP_001154340.1| - 0.071 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|145592338|ref|YP_001154340.1| - 0.1 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|145592338|ref|YP_001154340.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase NTPase_1 PF03266.15 gi|145592338|ref|YP_001154340.1| - 0.12 12.3 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 NTPase Zeta_toxin PF06414.12 gi|145592338|ref|YP_001154340.1| - 0.14 11.4 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|145592338|ref|YP_001154340.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|145592338|ref|YP_001154340.1| - 0.19 12.2 0.0 0.59 10.6 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|145592338|ref|YP_001154340.1| - 0.27 11.7 0.0 0.41 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain RHH_5 PF07878.11 gi|145592339|ref|YP_001154341.1| - 0.0098 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 MSL1_dimer PF16801.5 gi|145592339|ref|YP_001154341.1| - 0.059 13.1 0.8 0.097 12.4 0.8 1.3 1 0 0 1 1 1 0 Dimerisation domain of Male-specific-Lethal 1 RHH_1 PF01402.21 gi|145592339|ref|YP_001154341.1| - 0.065 13.2 0.5 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CcmD PF04995.14 gi|145592340|ref|YP_001154342.1| - 0.023 14.8 1.8 2.7 8.2 0.0 2.6 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) DUF2177 PF09945.9 gi|145592340|ref|YP_001154342.1| - 0.073 13.2 0.6 0.15 12.1 0.6 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2177) DUF2157 PF09925.9 gi|145592340|ref|YP_001154342.1| - 0.28 11.0 3.2 0.6 9.9 3.2 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) Nitrate_red_gam PF02665.14 gi|145592340|ref|YP_001154342.1| - 0.91 9.0 9.7 0.082 12.4 1.4 2.5 1 1 0 2 2 2 0 Nitrate reductase gamma subunit Fer4_17 PF13534.6 gi|145592341|ref|YP_001154343.1| - 8.3e-10 39.1 6.8 8.3e-10 39.1 6.8 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145592341|ref|YP_001154343.1| - 1.1e-09 38.6 7.8 1.2e-09 38.5 5.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145592341|ref|YP_001154343.1| - 8e-08 31.8 9.0 0.00034 20.3 2.1 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145592341|ref|YP_001154343.1| - 1.5e-07 31.9 6.2 1.5e-07 31.9 6.2 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|145592341|ref|YP_001154343.1| - 3.8e-06 27.0 18.0 1.4e-05 25.2 8.3 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain CCG PF02754.16 gi|145592341|ref|YP_001154343.1| - 4.3e-06 26.9 0.0 1.2e-05 25.4 0.0 1.8 1 0 0 1 1 1 1 Cysteine-rich domain Fer4_10 PF13237.6 gi|145592341|ref|YP_001154343.1| - 3.3e-05 23.9 15.8 3.6e-05 23.8 12.6 2.4 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145592341|ref|YP_001154343.1| - 0.00013 21.9 11.4 0.00035 20.5 1.7 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145592341|ref|YP_001154343.1| - 0.00016 21.8 2.9 0.41 10.9 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|145592341|ref|YP_001154343.1| - 0.00028 21.0 3.5 0.18 12.0 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145592341|ref|YP_001154343.1| - 0.00043 20.2 2.9 0.00043 20.2 2.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|145592341|ref|YP_001154343.1| - 0.017 16.0 4.3 1.1 10.2 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|145592341|ref|YP_001154343.1| - 0.026 15.5 16.7 0.29 12.2 4.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|145592341|ref|YP_001154343.1| - 0.029 15.3 14.4 0.033 15.1 11.7 2.4 2 1 1 3 3 2 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|145592341|ref|YP_001154343.1| - 0.036 14.6 2.7 0.036 14.6 2.7 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145592341|ref|YP_001154343.1| - 0.69 10.7 7.5 4.3 8.2 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S single cluster domain DsrC PF04358.13 gi|145592342|ref|YP_001154344.1| - 4.7e-13 49.6 0.0 5.6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 DsrC like protein HD PF01966.22 gi|145592342|ref|YP_001154344.1| - 0.099 12.9 0.0 0.1 12.8 0.0 1.1 1 0 0 1 1 1 0 HD domain Amidohydro_1 PF01979.20 gi|145592343|ref|YP_001154345.1| - 1.2e-12 47.9 0.0 7.7e-12 45.2 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family ATPase PF06745.13 gi|145592344|ref|YP_001154346.1| - 3.1e-16 59.4 0.0 1.9e-14 53.6 0.0 2.2 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|145592344|ref|YP_001154346.1| - 1.7e-07 31.0 0.0 5.2e-07 29.4 0.0 1.8 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|145592344|ref|YP_001154346.1| - 2e-05 23.4 0.0 0.0026 16.5 0.0 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA PF00004.29 gi|145592344|ref|YP_001154346.1| - 3.1e-05 24.4 0.0 0.00028 21.3 0.0 2.3 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|145592344|ref|YP_001154346.1| - 0.00014 21.7 0.0 0.00046 20.0 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|145592344|ref|YP_001154346.1| - 0.00029 20.3 0.0 0.0014 18.0 0.0 1.9 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.6 gi|145592344|ref|YP_001154346.1| - 0.00045 20.5 0.0 0.00095 19.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|145592344|ref|YP_001154346.1| - 0.00083 19.3 0.0 0.0054 16.7 0.0 2.5 2 1 0 2 2 2 1 ATPase domain predominantly from Archaea SRP54 PF00448.22 gi|145592344|ref|YP_001154346.1| - 0.003 17.2 0.0 0.18 11.4 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|145592344|ref|YP_001154346.1| - 0.0033 17.2 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|145592344|ref|YP_001154346.1| - 0.0049 16.1 0.0 0.0076 15.5 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_16 PF13191.6 gi|145592344|ref|YP_001154346.1| - 0.0077 16.6 0.0 0.17 12.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|145592344|ref|YP_001154346.1| - 0.017 15.1 0.0 0.099 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|145592344|ref|YP_001154346.1| - 0.021 14.7 0.0 0.054 13.4 0.0 1.7 1 1 0 1 1 1 0 NACHT domain RuvB_N PF05496.12 gi|145592344|ref|YP_001154346.1| - 0.036 13.8 0.2 0.3 10.8 0.0 2.7 4 0 0 4 4 4 0 Holliday junction DNA helicase RuvB P-loop domain MMR_HSR1 PF01926.23 gi|145592344|ref|YP_001154346.1| - 0.041 14.0 0.0 0.13 12.4 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.6 gi|145592344|ref|YP_001154346.1| - 0.06 13.4 0.0 0.46 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain KdpD PF02702.17 gi|145592344|ref|YP_001154346.1| - 0.069 12.6 0.0 3.2 7.2 0.0 2.3 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain Roc PF08477.13 gi|145592344|ref|YP_001154346.1| - 0.072 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_31 PF13614.6 gi|145592344|ref|YP_001154346.1| - 0.077 12.9 0.1 0.24 11.3 0.0 1.8 2 1 0 2 2 1 0 AAA domain Rad51 PF08423.11 gi|145592344|ref|YP_001154346.1| - 0.093 12.0 0.0 2.2 7.5 0.1 2.3 2 0 0 2 2 2 0 Rad51 ABC_tran PF00005.27 gi|145592344|ref|YP_001154346.1| - 0.095 13.2 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_18 PF13238.6 gi|145592344|ref|YP_001154346.1| - 0.15 12.6 0.0 0.35 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|145592344|ref|YP_001154346.1| - 0.17 12.3 0.0 0.42 11.0 0.0 1.7 1 1 0 1 1 1 0 RNA helicase DUF2794 PF10984.8 gi|145592344|ref|YP_001154346.1| - 0.18 11.9 1.3 2.7 8.2 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2794) Alpha-amylase PF00128.24 gi|145592345|ref|YP_001154347.1| - 2.7e-24 86.4 0.0 7.2e-10 38.9 0.0 3.0 2 1 0 2 2 2 2 Alpha amylase, catalytic domain QueF PF14489.6 gi|145592346|ref|YP_001154348.1| - 2.9e-07 30.5 0.0 3.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 QueF-like protein GTP_cyclohydroI PF01227.22 gi|145592346|ref|YP_001154348.1| - 0.00028 20.4 0.0 0.00033 20.1 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I IF3_C PF00707.22 gi|145592346|ref|YP_001154348.1| - 0.017 15.1 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor IF-3, C-terminal domain ABC2_membrane PF01061.24 gi|145592347|ref|YP_001154349.1| - 1.2e-05 24.8 17.4 1.2e-05 24.8 17.4 1.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.27 gi|145592348|ref|YP_001154350.1| - 5.4e-26 91.7 0.0 7e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|145592348|ref|YP_001154350.1| - 2.5e-11 43.9 0.0 1e-07 32.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|145592348|ref|YP_001154350.1| - 0.0043 16.5 0.0 1.3 8.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MeaB PF03308.16 gi|145592348|ref|YP_001154350.1| - 0.0069 15.4 0.1 0.012 14.6 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|145592348|ref|YP_001154350.1| - 0.016 15.6 0.0 0.04 14.3 0.0 1.6 1 1 1 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|145592348|ref|YP_001154350.1| - 0.03 14.1 0.0 0.072 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|145592348|ref|YP_001154350.1| - 0.031 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|145592348|ref|YP_001154350.1| - 0.05 13.8 0.1 2 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|145592348|ref|YP_001154350.1| - 0.054 14.0 0.0 0.086 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|145592348|ref|YP_001154350.1| - 0.057 13.8 0.3 0.13 12.6 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|145592348|ref|YP_001154350.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.5 2 0 0 2 2 2 0 Rad17 P-loop domain SRP54 PF00448.22 gi|145592348|ref|YP_001154350.1| - 0.098 12.3 0.1 0.21 11.2 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Phage_holin_5_2 PF16079.5 gi|145592349|ref|YP_001154351.1| - 0.0093 16.3 0.4 0.011 16.1 0.4 1.1 1 0 0 1 1 1 1 Phage holin family Hol44, in holin superfamily V ResIII PF04851.15 gi|145592350|ref|YP_001154352.1| - 4.1e-17 62.7 0.0 9.4e-17 61.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|145592350|ref|YP_001154352.1| - 3.5e-15 56.3 0.1 7.1e-15 55.3 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|145592350|ref|YP_001154352.1| - 4.9e-13 48.9 0.0 7.2e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|145592350|ref|YP_001154352.1| - 1.7e-07 31.2 0.0 1.2e-06 28.4 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|145592350|ref|YP_001154352.1| - 4.1e-06 25.8 0.0 0.00017 20.5 0.0 2.3 2 0 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C_2 PF13307.6 gi|145592350|ref|YP_001154352.1| - 0.024 14.8 1.6 0.076 13.2 0.0 2.1 1 1 1 2 2 2 0 Helicase C-terminal domain AAA_22 PF13401.6 gi|145592350|ref|YP_001154352.1| - 0.04 14.2 0.0 0.12 12.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain TrmB PF01978.19 gi|145592351|ref|YP_001154353.1| - 2.5e-06 27.3 0.1 4e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|145592351|ref|YP_001154353.1| - 0.0005 19.9 0.1 0.00086 19.1 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|145592351|ref|YP_001154353.1| - 0.00063 19.3 0.1 0.00095 18.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_17 PF12728.7 gi|145592351|ref|YP_001154353.1| - 0.00067 19.8 1.2 0.0019 18.4 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|145592351|ref|YP_001154353.1| - 0.00096 19.5 0.1 0.0016 18.8 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|145592351|ref|YP_001154353.1| - 0.0011 19.0 0.1 0.0015 18.5 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|145592351|ref|YP_001154353.1| - 0.0014 18.5 0.2 0.0027 17.6 0.2 1.5 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_23 PF13384.6 gi|145592351|ref|YP_001154353.1| - 0.0025 17.5 0.1 0.0058 16.4 0.0 1.7 2 0 0 2 2 1 1 Homeodomain-like domain HTH_9 PF08221.11 gi|145592351|ref|YP_001154353.1| - 0.0043 17.1 0.1 0.0072 16.4 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain MarR PF01047.22 gi|145592351|ref|YP_001154353.1| - 0.0044 16.9 0.1 0.0079 16.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|145592351|ref|YP_001154353.1| - 0.0052 16.5 0.1 0.0087 15.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|145592351|ref|YP_001154353.1| - 0.006 16.4 0.2 0.0098 15.7 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Replic_Relax PF13814.6 gi|145592351|ref|YP_001154353.1| - 0.01 15.9 0.4 0.024 14.7 0.1 1.7 2 0 0 2 2 2 0 Replication-relaxation HTH_Crp_2 PF13545.6 gi|145592351|ref|YP_001154353.1| - 0.017 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|145592351|ref|YP_001154353.1| - 0.03 14.2 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|145592351|ref|YP_001154353.1| - 0.08 12.9 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.10 gi|145592351|ref|YP_001154353.1| - 0.099 12.5 0.1 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PheRS_DBD1 PF18552.1 gi|145592351|ref|YP_001154353.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 1 AAA_assoc_C PF09821.9 gi|145592352|ref|YP_001154354.1| - 0.068 13.7 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain Pyr_redox PF00070.27 gi|145592352|ref|YP_001154354.1| - 0.072 13.7 0.0 0.16 12.5 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TEX33 PF15400.6 gi|145592353|ref|YP_001154355.1| - 0.051 14.1 0.3 0.13 12.8 0.1 1.7 1 1 1 2 2 2 0 Testis-expressed sequence 33 protein family Imm6 PF14434.6 gi|145592353|ref|YP_001154355.1| - 0.15 12.0 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Immunity protein Imm6 Amidohydro_1 PF01979.20 gi|145592354|ref|YP_001154356.1| - 0.0014 18.1 0.1 0.05 12.9 0.0 2.1 1 1 0 2 2 2 2 Amidohydrolase family Methyltranf_PUA PF13636.6 gi|145592354|ref|YP_001154356.1| - 0.018 15.0 0.8 0.054 13.5 0.8 1.8 1 0 0 1 1 1 0 RNA-binding PUA-like domain of methyltransferase RsmF TGT PF01702.18 gi|145592356|ref|YP_001154358.1| - 0.0032 16.7 0.0 0.0046 16.2 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase HEPN PF05168.14 gi|145592357|ref|YP_001154359.1| - 1.7e-27 95.9 0.0 1.9e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 HEPN domain Polbeta PF18765.1 gi|145592358|ref|YP_001154360.1| - 1e-08 35.1 0.0 1.4e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|145592358|ref|YP_001154360.1| - 1.5e-08 34.8 0.0 1.9e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Adenyl_transf PF04439.12 gi|145592358|ref|YP_001154360.1| - 0.18 10.9 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Streptomycin adenylyltransferase RlaP PF10127.9 gi|145592358|ref|YP_001154360.1| - 0.22 11.1 0.0 0.25 10.9 0.0 1.1 1 0 0 1 1 1 0 RNA repair pathway DNA polymerase beta family Trm112p PF03966.16 gi|145592359|ref|YP_001154361.1| - 2.8e-19 69.4 1.4 5.4e-19 68.5 1.4 1.5 1 0 0 1 1 1 1 Trm112p-like protein zf-RING_7 PF02591.15 gi|145592359|ref|YP_001154361.1| - 0.0035 17.5 0.9 0.072 13.3 0.1 2.8 2 0 0 2 2 2 1 C4-type zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|145592359|ref|YP_001154361.1| - 0.031 15.0 0.9 0.044 14.5 0.9 1.3 1 0 0 1 1 1 0 zinc-ribbon family NOD PF06816.13 gi|145592359|ref|YP_001154361.1| - 0.049 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 NOTCH protein NOB1_Zn_bind PF08772.11 gi|145592359|ref|YP_001154361.1| - 0.069 13.3 0.4 0.17 12.0 0.1 1.8 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF35_N PF12172.8 gi|145592359|ref|YP_001154361.1| - 0.11 12.4 6.8 0.44 10.5 0.0 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|145592359|ref|YP_001154361.1| - 0.16 12.0 0.6 0.29 11.2 0.6 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|145592359|ref|YP_001154361.1| - 2.6 8.6 11.2 1.6 9.3 1.2 3.4 3 0 0 3 3 3 0 Zinc-finger double domain Pyr_redox_2 PF07992.14 gi|145592360|ref|YP_001154362.1| - 7.1e-10 38.6 0.0 6.6e-08 32.1 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|145592360|ref|YP_001154362.1| - 0.00032 20.9 0.1 0.00059 20.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|145592360|ref|YP_001154362.1| - 0.00042 20.0 0.3 0.00098 18.8 0.1 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|145592360|ref|YP_001154362.1| - 0.0026 17.8 0.7 0.051 13.6 0.2 2.7 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|145592360|ref|YP_001154362.1| - 0.012 14.7 0.0 0.019 14.0 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|145592360|ref|YP_001154362.1| - 0.019 14.2 0.2 8.6 5.5 0.1 3.0 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|145592360|ref|YP_001154362.1| - 0.025 15.1 0.2 0.064 13.8 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|145592360|ref|YP_001154362.1| - 0.027 13.2 0.0 0.042 12.5 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_2 PF00890.24 gi|145592360|ref|YP_001154362.1| - 0.04 13.0 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain GIDA PF01134.22 gi|145592360|ref|YP_001154362.1| - 0.047 12.8 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|145592360|ref|YP_001154362.1| - 0.12 12.8 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|145592360|ref|YP_001154362.1| - 0.17 10.7 0.1 0.25 10.1 0.1 1.2 1 0 0 1 1 1 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|145592360|ref|YP_001154362.1| - 0.23 10.6 0.0 1.4 8.1 0.1 1.9 2 0 0 2 2 2 0 FAD binding domain DUF3624 PF12292.8 gi|145592362|ref|YP_001154364.1| - 0.073 13.5 0.5 0.12 12.8 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3624) HEPN PF05168.14 gi|145592362|ref|YP_001154364.1| - 0.08 13.1 0.0 0.14 12.3 0.0 1.5 1 1 0 1 1 1 0 HEPN domain Sod_Fe_C PF02777.18 gi|145592363|ref|YP_001154365.1| - 4.4e-35 119.9 1.0 6.7e-35 119.3 1.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|145592363|ref|YP_001154365.1| - 7.1e-31 106.5 1.1 7.1e-31 106.5 1.1 2.0 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, alpha-hairpin domain DUF4406 PF14359.6 gi|145592363|ref|YP_001154365.1| - 0.078 13.5 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4406) Thioredoxin_3 PF13192.6 gi|145592364|ref|YP_001154366.1| - 0.08 13.0 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin domain Zn-ribbon_8 PF09723.10 gi|145592365|ref|YP_001154367.1| - 0.24 11.5 2.1 0.6 10.3 2.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Methyltransf_23 PF13489.6 gi|145592366|ref|YP_001154368.1| - 0.00038 20.3 0.0 0.00058 19.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain ABC2_membrane PF01061.24 gi|145592367|ref|YP_001154369.1| - 7.3e-33 113.8 16.3 7.3e-33 113.8 16.3 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|145592367|ref|YP_001154369.1| - 2.1e-15 56.7 13.5 2.1e-15 56.7 13.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|145592367|ref|YP_001154369.1| - 1.7e-09 37.9 4.8 1.7e-09 37.9 4.8 1.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|145592367|ref|YP_001154369.1| - 7.5e-07 28.7 19.9 2.1e-06 27.3 19.9 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein OATP PF03137.20 gi|145592367|ref|YP_001154369.1| - 0.043 12.1 3.1 0.045 12.1 2.2 1.4 1 1 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family ABC_tran PF00005.27 gi|145592368|ref|YP_001154370.1| - 3.3e-29 102.2 0.0 7.6e-29 101.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|145592368|ref|YP_001154370.1| - 1.1e-11 45.1 0.1 1.1e-05 25.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|145592368|ref|YP_001154370.1| - 7.9e-06 26.5 0.1 1.9e-05 25.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|145592368|ref|YP_001154370.1| - 0.0094 16.5 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|145592368|ref|YP_001154370.1| - 0.018 15.5 0.4 0.24 11.8 0.4 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MutS_V PF00488.21 gi|145592368|ref|YP_001154370.1| - 0.019 15.0 0.1 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 MutS domain V IMS PF00817.20 gi|145592368|ref|YP_001154370.1| - 0.03 14.3 0.0 0.059 13.4 0.0 1.5 1 0 0 1 1 1 0 impB/mucB/samB family SRP54 PF00448.22 gi|145592368|ref|YP_001154370.1| - 0.03 13.9 1.4 0.093 12.4 0.2 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Sucrose_synth PF00862.19 gi|145592368|ref|YP_001154370.1| - 0.031 12.6 0.0 0.045 12.1 0.0 1.2 1 0 0 1 1 1 0 Sucrose synthase Rad17 PF03215.15 gi|145592368|ref|YP_001154370.1| - 0.09 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|145592368|ref|YP_001154370.1| - 0.13 11.9 0.0 0.29 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|145592368|ref|YP_001154370.1| - 0.18 11.6 0.2 0.4 10.5 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain STT3 PF02516.14 gi|145592369|ref|YP_001154371.1| - 0.0011 18.0 3.7 0.0013 17.7 3.7 1.0 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMP22_Claudin PF00822.20 gi|145592369|ref|YP_001154371.1| - 0.006 16.5 2.4 0.0076 16.1 2.4 1.1 1 0 0 1 1 1 1 PMP-22/EMP/MP20/Claudin family DUF4006 PF13179.6 gi|145592369|ref|YP_001154371.1| - 1.8 8.6 4.0 1.2 9.1 0.1 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF4006) DUF2975 PF11188.8 gi|145592369|ref|YP_001154371.1| - 1.8 8.4 14.3 4.3 7.2 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) AIRC PF00731.20 gi|145592370|ref|YP_001154372.1| - 2.2e-64 215.5 0.3 2.5e-64 215.3 0.3 1.0 1 0 0 1 1 1 1 AIR carboxylase ATP-grasp PF02222.22 gi|145592371|ref|YP_001154373.1| - 4.1e-41 140.4 0.0 6.2e-41 139.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|145592371|ref|YP_001154373.1| - 5.2e-13 48.5 0.0 1e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_5 PF13549.6 gi|145592371|ref|YP_001154373.1| - 0.015 14.7 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain GATase_6 PF13522.6 gi|145592373|ref|YP_001154375.1| - 1e-11 45.2 0.0 2.2e-11 44.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|145592373|ref|YP_001154375.1| - 3.1e-09 36.8 0.0 7.3e-09 35.6 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|145592373|ref|YP_001154375.1| - 7.7e-07 28.8 0.2 1.4e-06 27.9 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain AIRS PF00586.24 gi|145592374|ref|YP_001154376.1| - 2.8e-44 149.7 2.2 5.2e-23 81.5 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|145592374|ref|YP_001154376.1| - 3.9e-37 127.8 2.6 1.7e-25 90.0 0.7 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain FGAR-AT_linker PF18072.1 gi|145592374|ref|YP_001154376.1| - 7.1e-10 39.3 0.1 1.3e-09 38.5 0.1 1.4 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain YitT_membrane PF02588.15 gi|145592376|ref|YP_001154378.1| - 1.2 8.4 5.3 1.3 8.4 4.4 1.4 1 1 0 1 1 1 0 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Phage_holin_1 PF04531.13 gi|145592377|ref|YP_001154379.1| - 0.017 15.6 0.4 0.054 14.0 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage holin GATase_5 PF13507.6 gi|145592378|ref|YP_001154380.1| - 2.1e-36 125.4 0.0 7.9e-27 94.0 0.0 2.1 1 1 1 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|145592378|ref|YP_001154380.1| - 6.8e-10 39.0 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|145592378|ref|YP_001154380.1| - 4.9e-08 32.8 0.0 7.4e-08 32.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|145592378|ref|YP_001154380.1| - 2.1e-07 30.9 0.0 2.4e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|145592378|ref|YP_001154380.1| - 0.0014 18.5 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase C26 PurS PF02700.14 gi|145592379|ref|YP_001154381.1| - 2.3e-15 56.5 0.0 2.8e-15 56.2 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase TENA_THI-4 PF03070.16 gi|145592382|ref|YP_001154384.1| - 1.1e-41 143.0 1.4 1.4e-41 142.6 1.4 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.16 gi|145592383|ref|YP_001154385.1| - 1.4e-12 47.9 0.4 2.8e-12 46.9 0.4 1.5 1 1 0 1 1 1 1 TENA/THI-4/PQQC family PaREP1 PF05942.11 gi|145592384|ref|YP_001154386.1| - 2.9e-15 56.2 0.7 4.5e-15 55.6 0.7 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Exonuc_VIII PF06630.11 gi|145592384|ref|YP_001154386.1| - 0.045 13.6 0.0 0.056 13.3 0.0 1.1 1 0 0 1 1 1 0 Enterobacterial exodeoxyribonuclease VIII GARS_A PF01071.19 gi|145592385|ref|YP_001154387.1| - 3.6e-35 121.5 0.0 5.9e-35 120.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|145592385|ref|YP_001154387.1| - 1.8e-19 70.3 0.0 5e-19 68.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|145592385|ref|YP_001154387.1| - 2.1e-09 37.6 0.5 5.6e-09 36.2 0.1 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.6 gi|145592385|ref|YP_001154387.1| - 5.5e-05 22.8 0.1 0.00045 19.8 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|145592385|ref|YP_001154387.1| - 0.00082 18.7 0.0 0.0028 17.0 0.0 1.7 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp GSH-S_ATP PF02955.16 gi|145592385|ref|YP_001154387.1| - 0.0079 15.6 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.17 gi|145592385|ref|YP_001154387.1| - 0.0094 15.5 0.1 0.016 14.7 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|145592385|ref|YP_001154387.1| - 0.022 14.8 0.0 0.05 13.6 0.0 1.6 1 1 0 1 1 1 0 ATP-grasp domain Pribosyltran PF00156.27 gi|145592386|ref|YP_001154388.1| - 1.1e-11 44.5 0.4 1.8e-11 43.8 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain AIRS_C PF02769.22 gi|145592387|ref|YP_001154389.1| - 3e-20 72.9 0.2 5.9e-20 72.0 0.0 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|145592387|ref|YP_001154389.1| - 3.1e-10 40.6 1.0 5.3e-10 39.8 1.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain THF_DHG_CYH_C PF02882.19 gi|145592388|ref|YP_001154390.1| - 6.9e-41 139.2 0.0 1.1e-40 138.6 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|145592388|ref|YP_001154390.1| - 2.2e-23 82.7 0.0 3.2e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Formyl_trans_N PF00551.19 gi|145592389|ref|YP_001154391.1| - 1.7e-29 102.8 0.0 2.5e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase SAICAR_synt PF01259.18 gi|145592390|ref|YP_001154392.1| - 1.5e-40 139.4 0.0 1.9e-40 139.1 0.0 1.1 1 0 0 1 1 1 1 SAICAR synthetase Sugar_tr PF00083.24 gi|145592391|ref|YP_001154393.1| - 1.9e-24 86.4 21.0 5.9e-24 84.7 21.0 1.8 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|145592391|ref|YP_001154393.1| - 5.9e-20 71.5 46.3 5.9e-20 71.5 46.3 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Peptidase_S24 PF00717.23 gi|145592392|ref|YP_001154394.1| - 2.8e-06 27.2 0.0 4.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Peptidase S24-like FeoB_associated PF12669.7 gi|145592392|ref|YP_001154394.1| - 2.3 8.7 7.4 5.9 7.4 0.1 3.3 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein MarR_2 PF12802.7 gi|145592393|ref|YP_001154395.1| - 0.0036 17.1 0.2 0.0059 16.5 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_42 PF06224.12 gi|145592393|ref|YP_001154395.1| - 0.017 14.7 0.3 0.017 14.7 0.3 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|145592393|ref|YP_001154395.1| - 0.019 14.9 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 MarR family Penicillinase_R PF03965.16 gi|145592393|ref|YP_001154395.1| - 0.021 15.1 0.0 0.03 14.7 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HTH_15 PF12324.8 gi|145592393|ref|YP_001154395.1| - 0.12 12.3 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase RuvB_C PF05491.13 gi|145592393|ref|YP_001154395.1| - 0.13 12.2 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain Band_7 PF01145.25 gi|145592394|ref|YP_001154396.1| - 3.9e-19 69.3 13.0 1.1e-18 67.9 12.7 1.8 1 1 0 1 1 1 1 SPFH domain / Band 7 family Pilin PF00114.19 gi|145592394|ref|YP_001154396.1| - 0.0084 17.0 0.7 0.0084 17.0 0.7 1.9 2 0 0 2 2 2 1 Pilin (bacterial filament) Gag_p24 PF00607.20 gi|145592394|ref|YP_001154396.1| - 0.092 12.6 1.6 0.13 12.1 1.6 1.2 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) GP3_package PF16677.5 gi|145592394|ref|YP_001154396.1| - 0.12 12.5 0.2 0.25 11.5 0.2 1.5 1 0 0 1 1 1 0 DNA-packaging protein gp3 Methyltransf_25 PF13649.6 gi|145592395|ref|YP_001154397.1| - 5.8e-12 46.2 0.1 1.7e-11 44.7 0.2 1.7 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|145592395|ref|YP_001154397.1| - 2.5e-11 43.4 0.0 3.5e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|145592395|ref|YP_001154397.1| - 6.6e-11 42.2 0.0 8.3e-11 41.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145592395|ref|YP_001154397.1| - 1.5e-08 35.1 0.1 5.9e-08 33.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|145592395|ref|YP_001154397.1| - 2e-07 30.7 0.3 2.7e-07 30.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.18 gi|145592395|ref|YP_001154397.1| - 8e-06 25.3 0.1 1.5e-05 24.4 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|145592395|ref|YP_001154397.1| - 2.6e-05 24.0 0.0 3.6e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|145592395|ref|YP_001154397.1| - 4.3e-05 23.3 0.1 0.00031 20.5 0.1 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|145592395|ref|YP_001154397.1| - 0.00023 21.2 0.0 0.00042 20.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|145592395|ref|YP_001154397.1| - 0.00026 21.7 0.0 0.00038 21.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|145592395|ref|YP_001154397.1| - 0.00028 20.8 0.0 0.00031 20.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|145592395|ref|YP_001154397.1| - 0.0041 16.6 0.5 0.0093 15.4 0.0 1.7 2 0 0 2 2 2 1 Putative methyltransferase FtsJ PF01728.19 gi|145592395|ref|YP_001154397.1| - 0.0044 17.2 0.0 0.0047 17.1 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_16 PF10294.9 gi|145592395|ref|YP_001154397.1| - 0.035 13.8 0.4 2.4 7.8 0.2 2.4 2 1 0 2 2 2 0 Lysine methyltransferase TehB PF03848.14 gi|145592395|ref|YP_001154397.1| - 0.094 12.1 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB AMP-binding PF00501.28 gi|145592396|ref|YP_001154398.1| - 1.4e-87 294.0 0.0 1.8e-87 293.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|145592396|ref|YP_001154398.1| - 2.4e-23 82.9 0.2 8.8e-23 81.1 0.2 2.0 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain V4R PF02830.18 gi|145592397|ref|YP_001154399.1| - 0.083 12.9 0.2 0.28 11.2 0.1 1.9 2 0 0 2 2 2 0 V4R domain NUDIX PF00293.28 gi|145592398|ref|YP_001154400.1| - 7e-18 64.9 0.3 8.2e-18 64.7 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain ATPase_2 PF01637.18 gi|145592400|ref|YP_001154402.1| - 5.6e-57 193.3 0.0 6.8e-57 193.1 0.0 1.1 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|145592400|ref|YP_001154402.1| - 0.021 15.0 0.0 0.038 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|145592400|ref|YP_001154402.1| - 0.049 14.0 0.1 0.1 13.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|145592400|ref|YP_001154402.1| - 0.087 12.5 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|145592400|ref|YP_001154402.1| - 0.17 11.9 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain YceG_bac PF14266.6 gi|145592400|ref|YP_001154402.1| - 0.33 9.8 0.0 0.49 9.3 0.0 1.1 1 0 0 1 1 1 0 Putative component of 'biosynthetic module' NUDIX PF00293.28 gi|145592401|ref|YP_001154403.1| - 1.6e-21 76.8 3.1 2e-21 76.4 3.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|145592401|ref|YP_001154403.1| - 0.0014 18.6 0.6 0.0094 15.9 0.6 1.9 1 1 0 1 1 1 1 NUDIX domain Wyosine_form PF08608.12 gi|145592402|ref|YP_001154404.1| - 3.6e-19 68.9 0.1 6.9e-19 68.0 0.1 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|145592402|ref|YP_001154404.1| - 9.1e-18 65.2 0.0 3.3e-17 63.3 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Stealth_CR2 PF11380.8 gi|145592402|ref|YP_001154404.1| - 0.1 12.8 0.1 12 6.2 0.0 2.4 2 0 0 2 2 2 0 Stealth protein CR2, conserved region 2 adh_short_C2 PF13561.6 gi|145592403|ref|YP_001154405.1| - 5.1e-54 183.3 2.6 6.5e-54 183.0 2.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|145592403|ref|YP_001154405.1| - 3.8e-52 176.6 2.2 5.2e-52 176.2 2.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|145592403|ref|YP_001154405.1| - 6.6e-07 29.4 0.4 9e-07 29.0 0.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|145592403|ref|YP_001154405.1| - 0.086 12.3 1.3 0.16 11.4 0.4 1.9 2 1 0 2 2 2 0 NAD dependent epimerase/dehydratase family MEF2_binding PF09047.10 gi|145592403|ref|YP_001154405.1| - 0.093 12.6 0.0 0.3 11.0 0.0 1.8 1 0 0 1 1 1 0 MEF2 binding NOG1_N PF17835.1 gi|145592404|ref|YP_001154406.1| - 7.7e-25 87.7 0.3 1.4e-24 86.9 0.3 1.4 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|145592404|ref|YP_001154406.1| - 4e-23 80.9 0.0 1.6e-22 79.1 0.0 2.0 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|145592404|ref|YP_001154406.1| - 7.9e-19 67.8 0.0 2.3e-18 66.3 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|145592404|ref|YP_001154406.1| - 5.2e-14 52.1 0.0 8.4e-14 51.4 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B AIG1 PF04548.16 gi|145592404|ref|YP_001154406.1| - 0.00053 19.4 0.0 0.0012 18.3 0.0 1.7 1 1 0 1 1 1 1 AIG1 family MMR_HSR1_Xtn PF16897.5 gi|145592404|ref|YP_001154406.1| - 0.0038 17.2 0.2 0.07 13.1 0.0 2.5 2 1 0 2 2 2 1 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|145592404|ref|YP_001154406.1| - 0.011 15.1 0.0 4.4 6.5 0.0 2.4 1 1 1 2 2 2 0 Septin AAA_18 PF13238.6 gi|145592404|ref|YP_001154406.1| - 0.076 13.6 0.0 3.7 8.1 0.0 2.9 3 0 0 3 3 3 0 AAA domain Dynamin_N PF00350.23 gi|145592404|ref|YP_001154406.1| - 0.095 12.8 0.3 4 7.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family Ras PF00071.22 gi|145592404|ref|YP_001154406.1| - 0.14 11.8 0.0 0.56 9.8 0.0 1.9 1 1 0 1 1 1 0 Ras family ATP_bind_1 PF03029.17 gi|145592404|ref|YP_001154406.1| - 0.15 11.8 0.0 5.2 6.8 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein SAM_adeno_trans PF01887.16 gi|145592405|ref|YP_001154407.1| - 3.4e-83 278.7 0.0 3.9e-83 278.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase F_bP_aldolase PF01116.20 gi|145592405|ref|YP_001154407.1| - 0.18 11.3 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II RTC PF01137.21 gi|145592406|ref|YP_001154408.1| - 2.2e-84 282.1 0.0 2.6e-84 281.8 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|145592406|ref|YP_001154408.1| - 3.9e-25 88.3 0.9 7.4e-25 87.5 0.9 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Proteasome PF00227.26 gi|145592407|ref|YP_001154409.1| - 2.2e-53 180.6 0.6 2.5e-53 180.4 0.6 1.0 1 0 0 1 1 1 1 Proteasome subunit ETF_alpha PF00766.19 gi|145592408|ref|YP_001154410.1| - 1.8e-31 108.0 0.1 5.4e-31 106.5 0.0 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|145592408|ref|YP_001154410.1| - 3.8e-20 72.5 4.5 6.2e-20 71.8 4.5 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|145592409|ref|YP_001154411.1| - 1.2e-49 168.7 7.7 1.5e-49 168.4 7.7 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Mastoparan PF08249.11 gi|145592409|ref|YP_001154411.1| - 1.1 10.2 4.0 2.6 9.0 3.1 2.3 1 1 0 1 1 1 0 Mastoparan protein NTP_transf_2 PF01909.23 gi|145592410|ref|YP_001154412.1| - 4e-11 43.1 0.4 5e-11 42.7 0.0 1.3 2 0 0 2 2 2 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|145592410|ref|YP_001154412.1| - 1.5e-05 25.0 0.1 1.8e-05 24.7 0.1 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|145592410|ref|YP_001154412.1| - 0.0097 16.1 0.0 0.011 16.0 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF4455 PF14643.6 gi|145592410|ref|YP_001154412.1| - 0.21 10.2 0.0 0.23 10.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4455) HEPN PF05168.14 gi|145592411|ref|YP_001154413.1| - 1.6e-23 83.1 0.0 1.8e-23 82.9 0.0 1.0 1 0 0 1 1 1 1 HEPN domain SPASM PF13186.6 gi|145592412|ref|YP_001154414.1| - 0.046 14.2 0.1 0.082 13.4 0.1 1.5 1 1 0 1 1 1 0 Iron-sulfur cluster-binding domain SLATT_5 PF18160.1 gi|145592413|ref|YP_001154415.1| - 0.049 13.0 0.0 0.075 12.3 0.0 1.3 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF1206 PF06724.11 gi|145592413|ref|YP_001154415.1| - 0.22 11.7 1.8 0.39 10.8 0.1 2.0 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) CPBP PF02517.16 gi|145592414|ref|YP_001154416.1| - 7.2e-14 51.9 10.7 7.2e-14 51.9 10.7 2.4 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Methyltr_RsmB-F PF01189.17 gi|145592415|ref|YP_001154417.1| - 4.2e-33 114.7 0.0 6.3e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|145592415|ref|YP_001154417.1| - 9e-07 28.8 0.0 1.5e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145592415|ref|YP_001154417.1| - 0.00021 21.9 0.0 0.0018 19.0 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.19 gi|145592415|ref|YP_001154417.1| - 0.00048 20.3 0.0 0.00084 19.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PCMT PF01135.19 gi|145592415|ref|YP_001154417.1| - 0.021 14.6 0.1 0.071 12.9 0.0 1.7 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|145592415|ref|YP_001154417.1| - 0.062 12.6 0.0 0.41 10.0 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_24 PF13578.6 gi|145592415|ref|YP_001154417.1| - 0.11 13.5 0.0 0.34 12.0 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain UPF0020 PF01170.18 gi|145592415|ref|YP_001154417.1| - 0.15 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Metallophos_2 PF12850.7 gi|145592416|ref|YP_001154418.1| - 9.7e-31 107.2 0.0 1.2e-30 106.9 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|145592416|ref|YP_001154418.1| - 1.2e-06 29.1 0.1 0.00064 20.3 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|145592416|ref|YP_001154418.1| - 2.5e-05 23.7 0.0 0.0014 18.0 0.0 2.1 2 0 0 2 2 2 2 Metallophosphoesterase, calcineurin superfamily Usp PF00582.26 gi|145592416|ref|YP_001154418.1| - 0.028 14.9 0.2 0.17 12.4 0.2 2.0 1 1 0 1 1 1 0 Universal stress protein family Amidohydro_1 PF01979.20 gi|145592416|ref|YP_001154418.1| - 0.12 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family Ribosomal_L5_C PF00673.21 gi|145592417|ref|YP_001154419.1| - 8.1e-24 83.6 0.0 3e-23 81.8 0.0 2.0 2 1 1 3 3 3 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|145592417|ref|YP_001154419.1| - 5.3e-18 65.1 0.1 1e-17 64.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Late_protein_L1 PF00500.18 gi|145592417|ref|YP_001154419.1| - 0.075 11.8 0.0 0.097 11.5 0.0 1.1 1 0 0 1 1 1 0 L1 (late) protein PaREP1 PF05942.11 gi|145592418|ref|YP_001154420.1| - 2.4e-24 85.5 8.6 3.2e-24 85.1 8.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TOM20_plant PF06552.12 gi|145592418|ref|YP_001154420.1| - 0.067 12.9 0.1 0.086 12.6 0.1 1.2 1 0 0 1 1 1 0 Plant specific mitochondrial import receptor subunit TOM20 DUF4398 PF14346.6 gi|145592418|ref|YP_001154420.1| - 0.96 10.1 12.3 1.9 9.2 12.3 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4398) PAC2 PF09754.9 gi|145592419|ref|YP_001154421.1| - 3.8e-35 121.8 0.4 5e-35 121.4 0.4 1.2 1 0 0 1 1 1 1 PAC2 family DUF1561 PF07598.11 gi|145592419|ref|YP_001154421.1| - 0.09 11.0 0.0 0.12 10.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1561) Hydrolase_4 PF12146.8 gi|145592420|ref|YP_001154422.1| - 4.4e-09 35.9 0.0 2.2e-06 27.2 0.0 2.8 1 1 2 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|145592420|ref|YP_001154422.1| - 5.7e-09 36.0 0.0 6.8e-06 25.9 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|145592420|ref|YP_001154422.1| - 1e-08 36.1 2.7 0.00019 22.1 0.3 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family Esterase PF00756.20 gi|145592420|ref|YP_001154422.1| - 1.5e-08 34.6 0.0 1.6e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Putative esterase PGAP1 PF07819.13 gi|145592420|ref|YP_001154422.1| - 4.4e-06 26.6 0.0 5.7e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PGAP1-like protein Peptidase_S9 PF00326.21 gi|145592420|ref|YP_001154422.1| - 6.7e-05 22.5 0.0 0.00011 21.8 0.0 1.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|145592420|ref|YP_001154422.1| - 0.00012 21.8 0.0 0.0021 17.9 0.0 2.4 2 1 0 2 2 2 1 Alpha/beta hydrolase family DLH PF01738.18 gi|145592420|ref|YP_001154422.1| - 0.003 17.1 0.0 0.042 13.4 0.0 2.2 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 gi|145592420|ref|YP_001154422.1| - 0.0046 16.8 0.0 1.3 8.8 0.0 2.1 2 0 0 2 2 2 2 Phospholipase/Carboxylesterase Lipase_3 PF01764.25 gi|145592420|ref|YP_001154422.1| - 0.0058 16.5 0.0 0.0099 15.7 0.0 1.4 1 0 0 1 1 1 1 Lipase (class 3) FSH1 PF03959.13 gi|145592420|ref|YP_001154422.1| - 0.0082 15.8 0.0 0.015 15.0 0.0 1.5 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S15 PF02129.18 gi|145592420|ref|YP_001154422.1| - 0.01 15.5 0.0 0.031 13.9 0.0 1.7 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|145592420|ref|YP_001154422.1| - 0.014 15.3 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.20 gi|145592420|ref|YP_001154422.1| - 0.034 14.2 0.3 0.11 12.7 0.2 1.6 1 1 0 2 2 2 0 Thioesterase domain DUF2192 PF09958.9 gi|145592421|ref|YP_001154423.1| - 1.1e-69 234.5 4.0 1.3e-69 234.3 4.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) Ribosomal_L16 PF00252.18 gi|145592422|ref|YP_001154424.1| - 2.5e-36 124.6 0.1 2.9e-36 124.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e NAC PF01849.18 gi|145592423|ref|YP_001154425.1| - 6.7e-06 26.0 0.1 1.4e-05 24.9 0.1 1.6 1 0 0 1 1 1 1 NAC domain UBA PF00627.31 gi|145592423|ref|YP_001154425.1| - 0.0049 16.7 0.0 0.0095 15.8 0.0 1.6 1 0 0 1 1 1 1 UBA/TS-N domain DUF3562 PF12085.8 gi|145592423|ref|YP_001154425.1| - 0.028 14.0 0.4 0.092 12.4 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) TusA PF01206.17 gi|145592423|ref|YP_001154425.1| - 0.1 12.5 0.0 0.6 10.0 0.0 2.0 2 0 0 2 2 2 0 Sulfurtransferase TusA tRNA-synt_2c PF01411.19 gi|145592424|ref|YP_001154426.1| - 1.7e-121 406.5 0.0 2.8e-121 405.7 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|145592424|ref|YP_001154426.1| - 6.6e-14 51.7 0.2 1.5e-13 50.6 0.2 1.7 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|145592424|ref|YP_001154426.1| - 0.00076 18.8 0.1 0.0014 18.0 0.1 1.3 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit PA28_beta PF02252.18 gi|145592424|ref|YP_001154426.1| - 0.14 11.8 0.8 0.29 10.8 0.8 1.4 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit Peptidase_S41_N PF11918.8 gi|145592425|ref|YP_001154427.1| - 0.076 13.2 0.1 0.13 12.4 0.1 1.5 1 1 0 1 1 1 0 N-terminal domain of Peptidase_S41 in eukaryotic IRBP Spt4 PF06093.13 gi|145592426|ref|YP_001154428.1| - 6.1e-17 61.5 0.1 7.4e-17 61.2 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zinc_ribbon_2 PF13240.6 gi|145592426|ref|YP_001154428.1| - 0.00085 19.0 2.3 0.0017 18.0 2.3 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|145592426|ref|YP_001154428.1| - 0.0011 18.9 0.7 0.0012 18.8 0.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|145592426|ref|YP_001154428.1| - 0.0017 19.1 1.2 0.0021 18.7 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon family UPF0547 PF10571.9 gi|145592426|ref|YP_001154428.1| - 0.0046 17.0 4.9 0.0078 16.3 4.9 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 HypA PF01155.19 gi|145592426|ref|YP_001154428.1| - 0.0082 16.1 0.3 0.0097 15.9 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|145592426|ref|YP_001154428.1| - 0.0089 15.4 2.7 0.014 14.8 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|145592426|ref|YP_001154428.1| - 0.013 14.9 0.2 0.077 12.5 0.0 2.0 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RING_4 PF14570.6 gi|145592426|ref|YP_001154428.1| - 0.017 14.9 1.5 0.027 14.3 1.5 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-NADH-PPase PF09297.11 gi|145592426|ref|YP_001154428.1| - 0.051 13.2 1.1 0.066 12.9 0.2 1.6 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-RRN7 PF11781.8 gi|145592426|ref|YP_001154428.1| - 0.19 11.5 0.1 0.19 11.5 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-tcix PF14952.6 gi|145592426|ref|YP_001154428.1| - 0.25 11.0 6.4 1.4 8.6 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf_UBZ PF18439.1 gi|145592426|ref|YP_001154428.1| - 0.47 10.1 2.8 2 8.1 0.7 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger SHS2_Rpb7-N PF03876.17 gi|145592427|ref|YP_001154429.1| - 1.9e-18 66.6 0.0 3.5e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|145592427|ref|YP_001154429.1| - 1.9e-08 34.5 0.5 1.9e-08 34.5 0.5 1.6 2 0 0 2 2 2 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|145592427|ref|YP_001154429.1| - 0.0068 16.6 0.2 0.055 13.7 0.0 2.0 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 Ribosomal_S8 PF00410.19 gi|145592428|ref|YP_001154430.1| - 0.019 14.9 0.1 0.024 14.6 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein S8 Malic_M PF03949.15 gi|145592429|ref|YP_001154431.1| - 1.1e-24 87.1 0.3 1.9e-23 83.1 0.3 2.1 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.19 gi|145592429|ref|YP_001154431.1| - 4.2e-23 82.1 0.1 1.3e-16 60.9 0.2 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain AlaDh_PNT_C PF01262.21 gi|145592429|ref|YP_001154431.1| - 0.018 14.4 0.0 0.031 13.5 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Citrate_synt PF00285.21 gi|145592430|ref|YP_001154432.1| - 1.2e-126 422.7 0.0 1.3e-126 422.5 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain TIP49 PF06068.13 gi|145592432|ref|YP_001154434.1| - 5.9e-132 440.1 0.0 7.5e-132 439.8 0.0 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|145592432|ref|YP_001154434.1| - 2.9e-19 69.0 0.0 9.2e-19 67.3 0.0 1.9 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA PF00004.29 gi|145592432|ref|YP_001154434.1| - 1.9e-12 47.7 1.0 1.1e-07 32.3 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|145592432|ref|YP_001154434.1| - 4.2e-10 39.6 1.2 9e-07 28.8 0.0 2.8 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|145592432|ref|YP_001154434.1| - 6.4e-09 36.4 0.1 4.1e-08 33.8 0.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|145592432|ref|YP_001154434.1| - 3.7e-07 30.5 0.0 0.017 15.4 0.0 2.5 2 1 0 2 2 2 2 AAA domain DnaB_C PF03796.15 gi|145592432|ref|YP_001154434.1| - 0.00016 21.1 0.0 0.0004 19.8 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain Sigma54_activat PF00158.26 gi|145592432|ref|YP_001154434.1| - 0.00047 19.9 0.1 0.17 11.6 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|145592432|ref|YP_001154434.1| - 0.0019 18.2 1.5 0.0089 16.0 0.1 2.7 3 0 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|145592432|ref|YP_001154434.1| - 0.003 17.2 0.1 0.0082 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|145592432|ref|YP_001154434.1| - 0.0046 16.4 0.3 0.017 14.5 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.17 gi|145592432|ref|YP_001154434.1| - 0.0059 16.4 0.1 0.017 14.9 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|145592432|ref|YP_001154434.1| - 0.0072 16.5 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|145592432|ref|YP_001154434.1| - 0.008 15.7 0.0 0.043 13.3 0.0 2.0 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_11 PF13086.6 gi|145592432|ref|YP_001154434.1| - 0.021 14.6 0.0 0.047 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|145592432|ref|YP_001154434.1| - 0.021 15.1 0.0 0.049 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain MazE_antitoxin PF04014.18 gi|145592432|ref|YP_001154434.1| - 0.022 14.7 1.0 0.053 13.5 0.1 2.1 2 0 0 2 2 1 0 Antidote-toxin recognition MazE, bacterial antitoxin NACHT PF05729.12 gi|145592432|ref|YP_001154434.1| - 0.035 14.0 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|145592432|ref|YP_001154434.1| - 0.038 13.3 0.0 0.088 12.1 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_18 PF13238.6 gi|145592432|ref|YP_001154434.1| - 0.049 14.2 0.0 0.12 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|145592432|ref|YP_001154434.1| - 0.057 13.1 0.0 0.26 11.0 0.0 2.1 2 1 1 3 3 3 0 AAA domain SUKH-4 PF14435.6 gi|145592432|ref|YP_001154434.1| - 0.063 13.3 0.1 0.22 11.6 0.1 1.8 2 0 0 2 2 2 0 SUKH-4 immunity protein ABC_tran PF00005.27 gi|145592432|ref|YP_001154434.1| - 0.069 13.7 0.0 0.16 12.5 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|145592432|ref|YP_001154434.1| - 0.078 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin PhoH PF02562.16 gi|145592432|ref|YP_001154434.1| - 0.089 12.2 0.1 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 PhoH-like protein RNA_helicase PF00910.22 gi|145592432|ref|YP_001154434.1| - 0.1 13.0 0.0 0.23 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase MazG PF03819.17 gi|145592432|ref|YP_001154434.1| - 0.11 12.6 1.2 24 5.2 0.5 2.7 2 0 0 2 2 2 0 MazG nucleotide pyrophosphohydrolase domain TsaE PF02367.17 gi|145592432|ref|YP_001154434.1| - 0.15 12.0 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_17 PF13207.6 gi|145592432|ref|YP_001154434.1| - 0.17 12.3 1.4 0.52 10.7 0.0 2.6 4 0 0 4 4 2 0 AAA domain DUF2075 PF09848.9 gi|145592432|ref|YP_001154434.1| - 0.19 10.9 0.0 0.3 10.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.6 gi|145592432|ref|YP_001154434.1| - 0.26 11.6 2.9 1.9 8.8 2.9 2.3 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|145592432|ref|YP_001154434.1| - 0.29 11.1 0.6 0.9 9.5 0.0 2.0 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|145592432|ref|YP_001154434.1| - 1.5 8.5 3.3 1.1 8.9 0.2 2.2 3 0 0 3 3 3 0 AAA domain Trp_oprn_chp PF09534.10 gi|145592433|ref|YP_001154435.1| - 0.47 10.2 1.8 2.9 7.6 0.4 2.0 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) YwiC PF14256.6 gi|145592433|ref|YP_001154435.1| - 3.9 7.8 14.3 0.7 10.2 10.7 1.6 2 0 0 2 2 2 0 YwiC-like protein DUF4131 PF13567.6 gi|145592433|ref|YP_001154435.1| - 5.1 6.7 10.0 0.65 9.6 4.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Peptidase_M50 PF02163.22 gi|145592434|ref|YP_001154436.1| - 2.5e-21 76.1 1.0 4.7e-21 75.2 1.0 1.5 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|145592434|ref|YP_001154436.1| - 0.0041 17.4 0.0 0.13 12.6 0.0 2.8 2 1 0 2 2 2 1 PDZ domain Cation_efflux PF01545.21 gi|145592435|ref|YP_001154437.1| - 5.7e-29 101.3 12.5 7.1e-29 101.0 12.5 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|145592435|ref|YP_001154437.1| - 6.1e-21 74.3 0.7 9.9e-21 73.7 0.7 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter AMP-binding_C_2 PF14535.6 gi|145592435|ref|YP_001154437.1| - 0.005 17.1 0.7 0.01 16.1 0.7 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4295 PF14128.6 gi|145592435|ref|YP_001154437.1| - 0.041 13.7 1.8 0.081 12.8 1.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) IGPS PF00218.21 gi|145592436|ref|YP_001154438.1| - 1.6e-51 174.9 0.0 2e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|145592436|ref|YP_001154438.1| - 4e-05 23.2 0.0 0.00015 21.3 0.0 1.7 1 1 1 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|145592436|ref|YP_001154438.1| - 0.00046 19.3 0.2 0.00078 18.6 0.2 1.5 1 1 0 1 1 1 1 FMN-dependent dehydrogenase Ferritin PF00210.24 gi|145592436|ref|YP_001154438.1| - 0.051 13.5 0.0 0.088 12.7 0.0 1.3 1 0 0 1 1 1 0 Ferritin-like domain Dus PF01207.17 gi|145592436|ref|YP_001154438.1| - 0.059 12.5 0.0 0.075 12.1 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|145592436|ref|YP_001154438.1| - 0.12 11.6 0.1 0.32 10.3 0.0 1.7 1 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG Vut_1 PF02592.15 gi|145592437|ref|YP_001154439.1| - 1.4e-27 96.9 9.1 1.4e-27 96.9 9.1 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter FimA PF16970.5 gi|145592437|ref|YP_001154439.1| - 0.047 13.9 0.0 0.079 13.1 0.0 1.3 1 0 0 1 1 1 0 Type-1 fimbrial protein, A BacA PF02673.18 gi|145592438|ref|YP_001154440.1| - 2.9e-39 135.3 22.1 3.4e-39 135.1 22.1 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA RuvA_C PF07499.13 gi|145592438|ref|YP_001154440.1| - 0.032 14.7 0.2 0.13 12.8 0.2 2.1 1 0 0 1 1 1 0 RuvA, C-terminal domain PGPGW PF09656.10 gi|145592438|ref|YP_001154440.1| - 0.12 11.9 6.4 2.5 7.7 0.1 3.3 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF5472 PF17566.2 gi|145592438|ref|YP_001154440.1| - 0.75 9.8 3.0 0.58 10.1 0.2 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5472) 7tm_3 PF00003.22 gi|145592438|ref|YP_001154440.1| - 2.7 7.6 9.2 0.98 9.1 4.6 2.1 2 0 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF5362 PF17319.2 gi|145592438|ref|YP_001154440.1| - 4.7 7.1 13.1 4.5 7.2 0.9 3.7 3 2 0 3 3 3 0 Family of unknown function (DUF5362) DUF1418 PF07214.12 gi|145592438|ref|YP_001154440.1| - 5.2 7.0 7.4 9.3 6.2 0.8 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) DUF3782 PF12644.7 gi|145592439|ref|YP_001154441.1| - 0.0076 16.4 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3782) H2O2_YaaD PF03883.14 gi|145592439|ref|YP_001154441.1| - 0.2 11.2 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 Peroxide stress protein YaaA Radical_SAM PF04055.21 gi|145592440|ref|YP_001154442.1| - 1.9e-26 93.4 0.0 3.1e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|145592440|ref|YP_001154442.1| - 7.1e-10 39.3 0.0 1.8e-09 38.0 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|145592440|ref|YP_001154442.1| - 2.7e-07 30.9 0.0 7.5e-07 29.5 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|145592440|ref|YP_001154442.1| - 1.4e-06 28.4 0.0 2.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Porphobil_deam PF01379.20 gi|145592441|ref|YP_001154443.1| - 1.5e-63 214.0 0.0 2e-63 213.6 0.0 1.2 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|145592441|ref|YP_001154443.1| - 4.2e-07 30.3 0.1 8.3e-07 29.3 0.1 1.5 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain AsnC_trans_reg2 PF17805.1 gi|145592442|ref|YP_001154444.1| - 1.1e-37 128.0 0.4 7.4e-20 70.9 0.0 2.6 3 0 0 3 3 3 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|145592442|ref|YP_001154444.1| - 0.0029 17.4 0.0 1.7 8.5 0.0 2.7 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain ALAD PF00490.21 gi|145592443|ref|YP_001154445.1| - 1.6e-139 464.5 0.0 1.8e-139 464.3 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase NAD_binding_7 PF13241.6 gi|145592444|ref|YP_001154446.1| - 2.2e-21 76.2 0.1 4e-21 75.4 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding CysG_dimeriser PF10414.9 gi|145592444|ref|YP_001154446.1| - 0.0011 18.6 0.7 0.0031 17.2 0.7 1.7 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region AlaDh_PNT_C PF01262.21 gi|145592444|ref|YP_001154446.1| - 0.0015 17.9 0.1 0.0027 17.0 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|145592444|ref|YP_001154446.1| - 0.01 15.2 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.9 gi|145592444|ref|YP_001154446.1| - 0.016 15.1 0.3 0.033 14.0 0.2 1.7 2 0 0 2 2 2 0 Rossmann-like domain Flavodoxin_1 PF00258.25 gi|145592444|ref|YP_001154446.1| - 0.029 14.6 0.3 0.2 11.9 0.1 2.1 1 1 1 2 2 2 0 Flavodoxin F420_oxidored PF03807.17 gi|145592444|ref|YP_001154446.1| - 0.052 14.1 0.1 0.13 12.9 0.1 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|145592444|ref|YP_001154446.1| - 0.11 13.1 0.5 0.24 12.0 0.5 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|145592444|ref|YP_001154446.1| - 0.13 11.5 0.1 0.22 10.7 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Flp1_like PF16982.5 gi|145592445|ref|YP_001154447.1| - 0.00068 19.0 2.8 0.0027 17.1 2.8 1.7 1 1 1 2 2 2 1 Putative Flagellin, Flp1-like, domain VIT1 PF01988.19 gi|145592445|ref|YP_001154447.1| - 0.05 13.5 2.1 0.058 13.3 2.1 1.0 1 0 0 1 1 1 0 VIT family Tenui_NS4 PF03300.13 gi|145592445|ref|YP_001154447.1| - 0.14 11.6 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Tenuivirus non-structural, movement protein NS4 HEM4 PF02602.15 gi|145592446|ref|YP_001154448.1| - 2.7e-18 66.2 3.7 3.7e-18 65.7 3.7 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DUF2866 PF11065.8 gi|145592446|ref|YP_001154448.1| - 0.13 12.3 3.1 2.2 8.4 0.0 2.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2866) TP_methylase PF00590.20 gi|145592447|ref|YP_001154449.1| - 1.1e-44 152.9 0.3 1.3e-44 152.7 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AlaDh_PNT_C PF01262.21 gi|145592447|ref|YP_001154449.1| - 0.099 11.9 0.1 0.32 10.3 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PAS_3 PF08447.12 gi|145592449|ref|YP_001154451.1| - 0.06 13.6 0.4 1.5 9.2 0.3 2.8 2 1 1 3 3 3 0 PAS fold AbiEii PF08843.11 gi|145592449|ref|YP_001154451.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase AbiEii toxin, Type IV TA system Aminotran_3 PF00202.21 gi|145592450|ref|YP_001154452.1| - 4.2e-61 206.8 0.0 5e-61 206.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|145592450|ref|YP_001154452.1| - 7.8e-05 22.0 0.0 9.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Radical_SAM PF04055.21 gi|145592451|ref|YP_001154453.1| - 1.1e-18 68.2 0.0 3.1e-18 66.7 0.0 1.7 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|145592451|ref|YP_001154453.1| - 4.1e-07 30.3 0.0 1.1e-06 29.0 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|145592451|ref|YP_001154453.1| - 2.1e-06 28.1 0.0 5.2e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|145592451|ref|YP_001154453.1| - 0.0012 18.9 0.0 0.0022 18.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Dioxygenase_N PF04444.14 gi|145592451|ref|YP_001154453.1| - 0.0081 16.0 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Catechol dioxygenase N terminus DUF1906 PF08924.11 gi|145592451|ref|YP_001154453.1| - 0.19 11.9 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) zf-TFIIB PF13453.6 gi|145592452|ref|YP_001154454.1| - 1.2e-14 53.3 0.3 1.7e-14 52.8 0.3 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger CbiX PF01903.17 gi|145592453|ref|YP_001154455.1| - 0.015 15.6 0.0 1.8 9.0 0.0 2.8 2 1 1 3 3 3 0 CbiX PaRep2b PF07775.11 gi|145592454|ref|YP_001154456.1| - 1.9e-16 59.7 0.1 2.2e-16 59.5 0.1 1.1 1 0 0 1 1 1 1 PaRep2b protein GlutR_N PF05201.15 gi|145592455|ref|YP_001154457.1| - 1.4e-28 99.5 0.1 1.4e-28 99.5 0.1 2.5 3 0 0 3 3 3 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|145592455|ref|YP_001154457.1| - 4.1e-20 72.2 0.0 9.5e-20 71.1 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|145592455|ref|YP_001154457.1| - 3e-10 40.6 0.1 3e-10 40.6 0.1 2.3 2 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|145592455|ref|YP_001154457.1| - 1.2e-05 25.6 1.1 2.8e-05 24.3 0.1 2.1 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|145592455|ref|YP_001154457.1| - 1.8e-05 25.0 1.6 4.3e-05 23.8 0.1 2.4 3 0 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain AlaDh_PNT_C PF01262.21 gi|145592455|ref|YP_001154457.1| - 8.4e-05 22.0 0.2 0.00018 20.9 0.2 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|145592455|ref|YP_001154457.1| - 8.9e-05 22.0 0.4 0.00022 20.6 0.4 1.6 1 0 0 1 1 1 1 ThiF family 2-Hacid_dh_C PF02826.19 gi|145592455|ref|YP_001154457.1| - 0.00051 19.4 0.0 0.0035 16.7 0.0 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|145592455|ref|YP_001154457.1| - 0.0031 17.4 0.2 0.0031 17.4 0.2 2.5 2 1 1 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GlutR_dimer PF00745.20 gi|145592455|ref|YP_001154457.1| - 0.0031 17.9 6.7 0.0031 17.9 6.7 2.9 3 1 0 3 3 3 1 Glutamyl-tRNAGlu reductase, dimerisation domain NAD_Gly3P_dh_N PF01210.23 gi|145592455|ref|YP_001154457.1| - 0.0048 16.9 0.0 0.013 15.5 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.6 gi|145592455|ref|YP_001154457.1| - 0.006 16.5 0.2 0.006 16.5 0.2 1.9 2 0 0 2 2 2 1 NAD(P)H-binding IlvN PF07991.12 gi|145592455|ref|YP_001154457.1| - 0.0074 15.9 0.0 0.018 14.6 0.0 1.8 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_7 PF13241.6 gi|145592455|ref|YP_001154457.1| - 0.013 15.9 3.4 0.05 14.0 3.4 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|145592455|ref|YP_001154457.1| - 0.016 14.9 0.1 0.027 14.1 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.10 gi|145592455|ref|YP_001154457.1| - 0.028 14.3 0.5 0.058 13.3 0.0 1.7 2 0 0 2 2 2 0 KR domain FAD_binding_3 PF01494.19 gi|145592455|ref|YP_001154457.1| - 0.029 13.6 0.2 0.029 13.6 0.2 2.0 2 0 0 2 2 2 0 FAD binding domain 3HCDH PF00725.22 gi|145592455|ref|YP_001154457.1| - 0.078 13.6 0.2 33 5.2 0.0 3.2 3 1 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ldh_1_N PF00056.23 gi|145592455|ref|YP_001154457.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Malic_M PF03949.15 gi|145592455|ref|YP_001154457.1| - 0.18 11.0 1.9 1.9 7.7 0.2 2.2 2 0 0 2 2 2 0 Malic enzyme, NAD binding domain DAO PF01266.24 gi|145592455|ref|YP_001154457.1| - 0.27 10.8 6.6 0.63 9.6 3.4 2.4 2 1 0 2 2 2 0 FAD dependent oxidoreductase WPP PF13943.6 gi|145592455|ref|YP_001154457.1| - 0.42 11.0 7.8 4.4 7.8 6.0 2.7 2 1 0 2 2 1 0 WPP domain DUF1297 PF06973.12 gi|145592456|ref|YP_001154458.1| - 2.7e-81 271.6 0.0 3.2e-81 271.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|145592456|ref|YP_001154458.1| - 3.4e-44 149.7 0.0 5.2e-44 149.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) Fer4_15 PF13459.6 gi|145592457|ref|YP_001154459.1| - 6.9e-12 45.9 0.9 7.8e-12 45.8 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145592457|ref|YP_001154459.1| - 0.01 16.4 0.1 0.01 16.4 0.1 2.3 2 1 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_2 PF12797.7 gi|145592457|ref|YP_001154459.1| - 0.071 13.2 0.5 0.071 13.2 0.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145592457|ref|YP_001154459.1| - 0.18 11.9 0.4 0.18 11.9 0.4 2.4 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.27 gi|145592457|ref|YP_001154459.1| - 0.7 9.8 10.1 0.24 11.3 1.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain ATP-cone PF03477.16 gi|145592458|ref|YP_001154460.1| - 4.7e-08 33.5 1.3 4.7e-08 33.5 0.5 1.4 1 1 1 2 2 2 1 ATP cone domain PHB_acc_N PF07879.11 gi|145592458|ref|YP_001154460.1| - 0.032 14.3 0.1 0.062 13.4 0.1 1.4 1 0 0 1 1 1 0 PHB/PHA accumulation regulator DNA-binding domain UPF0146 PF03686.13 gi|145592458|ref|YP_001154460.1| - 0.037 13.9 0.0 0.045 13.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) KNOX1 PF03790.13 gi|145592458|ref|YP_001154460.1| - 0.2 11.4 0.2 0.34 10.7 0.2 1.3 1 0 0 1 1 1 0 KNOX1 domain DUF1297 PF06973.12 gi|145592459|ref|YP_001154461.1| - 1.9e-52 177.6 0.1 5.1e-52 176.1 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|145592459|ref|YP_001154461.1| - 1.2e-38 131.9 0.0 1.7e-38 131.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.14 gi|145592459|ref|YP_001154461.1| - 0.00094 19.3 0.0 0.0022 18.1 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.11 gi|145592459|ref|YP_001154461.1| - 0.0025 17.4 0.0 0.0052 16.4 0.0 1.5 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.17 gi|145592459|ref|YP_001154461.1| - 0.17 11.3 0.0 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain 2-Hacid_dh_C PF02826.19 gi|145592460|ref|YP_001154462.1| - 9.2e-61 204.3 0.0 1.3e-60 203.8 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|145592460|ref|YP_001154462.1| - 3.7e-29 101.1 0.1 4.1e-29 100.9 0.1 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|145592460|ref|YP_001154462.1| - 2.7e-05 24.4 0.0 5.4e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|145592460|ref|YP_001154462.1| - 0.019 14.3 0.6 0.99 8.7 0.1 2.5 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain AbiEi_4 PF13338.6 gi|145592460|ref|YP_001154462.1| - 0.029 14.5 0.0 4.7 7.4 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin 3HCDH_N PF02737.18 gi|145592460|ref|YP_001154462.1| - 0.043 13.7 0.0 0.5 10.2 0.0 2.6 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TPP_enzyme_N PF02776.18 gi|145592461|ref|YP_001154463.1| - 1.3e-50 171.3 0.0 8.1e-49 165.5 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|145592461|ref|YP_001154463.1| - 2e-34 118.6 0.2 7.6e-34 116.7 0.1 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|145592461|ref|YP_001154463.1| - 2e-31 108.5 0.0 4.1e-31 107.5 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|145592461|ref|YP_001154463.1| - 0.054 13.3 0.0 0.096 12.5 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit XFP_N PF09364.10 gi|145592461|ref|YP_001154463.1| - 0.14 10.9 0.0 0.24 10.2 0.0 1.2 1 0 0 1 1 1 0 XFP N-terminal domain DUF488 PF04343.13 gi|145592462|ref|YP_001154464.1| - 6.5e-27 94.6 0.0 8e-27 94.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 ILVD_EDD PF00920.21 gi|145592463|ref|YP_001154465.1| - 3.6e-197 656.1 0.0 4.1e-197 655.9 0.0 1.0 1 0 0 1 1 1 1 Dehydratase family Radical_SAM PF04055.21 gi|145592464|ref|YP_001154466.1| - 2e-24 86.8 0.0 3.2e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|145592464|ref|YP_001154466.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Complex1_49kDa PF00346.19 gi|145592466|ref|YP_001154468.1| - 6e-69 232.1 0.0 8.1e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Oxidored_q6 PF01058.22 gi|145592467|ref|YP_001154469.1| - 3.5e-23 81.9 0.2 4.1e-23 81.7 0.2 1.1 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Oxidored_q4 PF00507.19 gi|145592468|ref|YP_001154470.1| - 2.8e-06 27.4 1.0 7e-06 26.1 0.0 1.8 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF389 PF04087.14 gi|145592468|ref|YP_001154470.1| - 0.079 13.0 5.8 0.11 12.5 5.8 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF389) NADHdh PF00146.21 gi|145592469|ref|YP_001154471.1| - 1.4e-74 251.1 23.8 1.7e-74 250.8 23.8 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|145592470|ref|YP_001154472.1| - 1.2e-15 56.5 12.3 1.2e-08 34.5 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145592470|ref|YP_001154472.1| - 1.6e-14 54.2 18.1 5.2e-11 43.0 8.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592470|ref|YP_001154472.1| - 7.6e-12 45.2 19.3 8.7e-09 35.4 10.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145592470|ref|YP_001154472.1| - 8.4e-12 44.6 12.5 3e-06 27.0 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145592470|ref|YP_001154472.1| - 2e-10 40.7 6.8 3.1e-10 40.0 6.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592470|ref|YP_001154472.1| - 2.5e-10 41.1 6.6 7.2e-05 23.6 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|145592470|ref|YP_001154472.1| - 1.3e-09 37.6 11.6 5.4e-05 23.0 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145592470|ref|YP_001154472.1| - 2.3e-09 37.3 3.7 0.00024 21.2 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145592470|ref|YP_001154472.1| - 3.5e-08 33.8 4.7 0.0012 19.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|145592470|ref|YP_001154472.1| - 4e-07 30.0 12.2 0.00078 19.8 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|145592470|ref|YP_001154472.1| - 2.2e-06 28.1 10.1 0.0044 17.5 0.9 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|145592470|ref|YP_001154472.1| - 2.2e-05 24.9 8.6 0.0042 17.6 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|145592470|ref|YP_001154472.1| - 3.5e-05 24.4 16.8 0.0065 17.3 3.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|145592470|ref|YP_001154472.1| - 4.3e-05 24.2 8.2 0.012 16.4 0.2 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|145592470|ref|YP_001154472.1| - 0.00024 21.9 5.2 0.099 13.5 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|145592470|ref|YP_001154472.1| - 0.0017 18.6 10.4 0.086 13.0 10.8 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain c-SKI_SMAD_bind PF08782.10 gi|145592470|ref|YP_001154472.1| - 2.8 8.2 7.3 0.33 11.2 1.9 1.9 1 1 1 2 2 2 0 c-SKI Smad4 binding domain TPP_enzyme_C PF02775.21 gi|145592471|ref|YP_001154473.1| - 2.9e-29 101.8 1.2 4e-29 101.4 1.2 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|145592472|ref|YP_001154474.1| - 1.4e-63 214.7 0.7 2e-63 214.2 0.7 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|145592472|ref|YP_001154474.1| - 3.9e-22 78.5 0.1 7.8e-22 77.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|145592472|ref|YP_001154474.1| - 5.4e-08 32.7 0.0 1.5e-07 31.3 0.0 1.7 1 1 0 1 1 1 1 Transketolase, C-terminal domain IMS_C PF11799.8 gi|145592472|ref|YP_001154474.1| - 0.046 14.4 0.0 0.092 13.5 0.0 1.4 1 0 0 1 1 1 0 impB/mucB/samB family C-terminal domain POR PF01558.18 gi|145592473|ref|YP_001154475.1| - 1.6e-33 116.2 0.3 2.1e-33 115.9 0.3 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.27 gi|145592473|ref|YP_001154475.1| - 1.1e-14 53.5 14.4 4e-08 32.7 3.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145592473|ref|YP_001154475.1| - 3.5e-11 43.1 5.2 6.4e-11 42.2 5.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|145592473|ref|YP_001154475.1| - 8.5e-11 41.4 13.1 7.3e-06 25.8 2.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|145592473|ref|YP_001154475.1| - 5.3e-10 39.7 16.0 1e-08 35.6 8.7 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592473|ref|YP_001154475.1| - 5.7e-09 36.0 7.3 9e-09 35.3 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592473|ref|YP_001154475.1| - 4.5e-08 33.9 8.0 0.00024 22.0 2.4 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|145592473|ref|YP_001154475.1| - 5.6e-08 32.8 7.7 3.2e-07 30.4 8.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|145592473|ref|YP_001154475.1| - 9.2e-06 25.5 11.0 0.001 19.0 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|145592473|ref|YP_001154475.1| - 0.00013 22.3 6.0 0.00026 21.4 6.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145592473|ref|YP_001154475.1| - 0.00014 22.3 3.8 0.15 12.7 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|145592473|ref|YP_001154475.1| - 0.0014 19.3 9.4 0.35 11.6 1.2 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|145592473|ref|YP_001154475.1| - 0.0048 17.4 10.2 0.14 12.7 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|145592473|ref|YP_001154475.1| - 0.0063 16.9 14.3 0.15 12.7 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145592473|ref|YP_001154475.1| - 0.064 14.2 17.1 0.23 12.5 7.5 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145592473|ref|YP_001154475.1| - 0.16 12.2 4.0 2.4 8.4 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|145592473|ref|YP_001154475.1| - 0.31 11.9 11.0 0.14 13.1 2.0 2.3 1 1 0 2 2 2 0 4Fe-4S dicluster domain Proton_antipo_M PF00361.20 gi|145592474|ref|YP_001154476.1| - 8.8e-18 64.5 20.0 1.3e-15 57.4 12.1 2.6 1 1 1 2 2 2 2 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|145592475|ref|YP_001154477.1| - 1.5e-23 83.4 13.7 4.5e-23 81.9 13.1 2.1 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|145592476|ref|YP_001154478.1| - 4.4e-26 91.7 25.5 4.4e-26 91.7 25.5 3.5 2 1 1 3 3 3 1 Proton-conducting membrane transporter Oxidored_q2 PF00420.24 gi|145592477|ref|YP_001154479.1| - 0.2 11.3 11.5 0.39 10.4 11.6 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.16 gi|145592477|ref|YP_001154479.1| - 0.27 10.5 11.8 0.31 10.3 11.8 1.0 1 0 0 1 1 1 0 High-affinity nickel-transport protein Nucleos_tra2_N PF01773.20 gi|145592478|ref|YP_001154480.1| - 2.2 8.9 9.9 0.3 11.7 3.5 2.5 1 1 2 3 3 3 0 Na+ dependent nucleoside transporter N-terminus DUF3169 PF11368.8 gi|145592478|ref|YP_001154480.1| - 5.3 6.5 7.6 3.5 7.1 2.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) Peptidase_U4 PF03419.13 gi|145592478|ref|YP_001154480.1| - 8.1 5.6 12.0 8.6 5.6 12.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA AFOR_C PF01314.18 gi|145592479|ref|YP_001154481.1| - 4.3e-120 401.2 0.1 5.3e-120 400.9 0.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|145592479|ref|YP_001154481.1| - 2.5e-72 242.9 0.2 6.1e-72 241.7 0.1 1.7 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain NAD_kinase PF01513.21 gi|145592480|ref|YP_001154482.1| - 9.6e-17 61.1 0.8 2.4e-15 56.5 0.8 2.0 1 1 0 1 1 1 1 ATP-NAD kinase PIN_6 PF17146.4 gi|145592481|ref|YP_001154483.1| - 2.7e-08 34.2 0.3 5.9e-08 33.1 0.3 1.5 1 1 0 1 1 1 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|145592481|ref|YP_001154483.1| - 0.00035 20.0 1.0 0.00049 19.6 1.0 1.4 1 1 0 1 1 1 1 PINc domain ribonuclease DUF4411 PF14367.6 gi|145592481|ref|YP_001154483.1| - 0.0028 17.6 0.0 0.02 14.8 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) DUF371 PF04027.13 gi|145592483|ref|YP_001154485.1| - 3.7e-37 127.3 0.0 4.2e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PTE PF02126.18 gi|145592483|ref|YP_001154485.1| - 0.13 11.7 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Phosphotriesterase family tRNA-synt_1b PF00579.25 gi|145592484|ref|YP_001154486.1| - 3.6e-41 141.4 0.0 5.6e-41 140.8 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Pyr_redox_2 PF07992.14 gi|145592485|ref|YP_001154487.1| - 0.00058 19.2 0.0 0.001 18.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|145592485|ref|YP_001154487.1| - 0.0017 17.5 0.2 0.58 9.1 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|145592485|ref|YP_001154487.1| - 0.022 14.0 0.1 0.66 9.1 0.1 2.1 2 0 0 2 2 2 0 FAD binding domain HD PF01966.22 gi|145592486|ref|YP_001154488.1| - 1.8e-11 44.3 0.3 4.3e-11 43.1 0.3 1.7 1 0 0 1 1 1 1 HD domain PDEase_I PF00233.19 gi|145592486|ref|YP_001154488.1| - 0.086 12.5 0.5 0.15 11.8 0.5 1.3 1 0 0 1 1 1 0 3'5'-cyclic nucleotide phosphodiesterase HDOD PF08668.12 gi|145592486|ref|YP_001154488.1| - 0.14 11.6 0.1 0.23 10.9 0.1 1.2 1 0 0 1 1 1 0 HDOD domain Peptidase_C92 PF05708.12 gi|145592487|ref|YP_001154489.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.4 2 0 0 2 2 2 0 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Methyltransf_25 PF13649.6 gi|145592488|ref|YP_001154490.1| - 4.9e-06 27.2 0.0 9.5e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|145592488|ref|YP_001154490.1| - 1.3e-05 25.8 0.0 2.7e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|145592488|ref|YP_001154490.1| - 8.7e-05 22.2 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Spermine_synth PF01564.17 gi|145592488|ref|YP_001154490.1| - 0.0006 19.3 0.0 0.00095 18.6 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase domain MTS PF05175.14 gi|145592488|ref|YP_001154490.1| - 0.0007 19.2 0.0 0.00098 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF3201 PF11447.8 gi|145592488|ref|YP_001154490.1| - 0.025 14.1 0.1 1.9 8.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3201) UPF0020 PF01170.18 gi|145592488|ref|YP_001154490.1| - 0.084 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Peptidase_M24 PF00557.24 gi|145592489|ref|YP_001154491.1| - 3.6e-58 196.7 0.7 5.5e-58 196.1 0.7 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|145592489|ref|YP_001154491.1| - 5.7e-05 23.8 0.0 0.00012 22.7 0.0 1.6 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ASCH PF04266.14 gi|145592490|ref|YP_001154492.1| - 1.2e-10 41.9 0.0 1.4e-10 41.6 0.0 1.1 1 0 0 1 1 1 1 ASCH domain HTH_IclR PF09339.10 gi|145592492|ref|YP_001154494.1| - 9.4e-11 41.3 0.1 2.1e-10 40.2 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|145592492|ref|YP_001154494.1| - 4.5e-09 36.1 0.1 9.3e-09 35.0 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|145592492|ref|YP_001154494.1| - 2.1e-08 33.6 0.0 4.1e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|145592492|ref|YP_001154494.1| - 4e-08 33.0 0.1 6.6e-08 32.3 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|145592492|ref|YP_001154494.1| - 1.3e-07 31.6 0.7 5.9e-07 29.4 0.1 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|145592492|ref|YP_001154494.1| - 1.4e-06 28.1 0.0 3e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|145592492|ref|YP_001154494.1| - 1.5e-06 28.3 0.0 2.3e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|145592492|ref|YP_001154494.1| - 3.8e-06 26.7 0.1 1.4e-05 24.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|145592492|ref|YP_001154494.1| - 3.5e-05 23.4 0.0 7.5e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.6 gi|145592492|ref|YP_001154494.1| - 3.8e-05 24.1 0.1 6.3e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|145592492|ref|YP_001154494.1| - 6e-05 22.8 0.1 0.00012 21.8 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.21 gi|145592492|ref|YP_001154494.1| - 0.00011 21.8 0.5 0.00027 20.5 0.3 1.8 1 1 1 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|145592492|ref|YP_001154494.1| - 0.00011 22.1 0.0 0.00024 21.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Penicillinase_R PF03965.16 gi|145592492|ref|YP_001154494.1| - 0.00049 20.4 0.1 0.00075 19.8 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor HTH_41 PF14502.6 gi|145592492|ref|YP_001154494.1| - 0.0017 18.0 0.1 0.0032 17.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|145592492|ref|YP_001154494.1| - 0.0023 17.9 0.1 0.0046 16.9 0.1 1.5 1 0 0 1 1 1 1 HTH domain TFIIE_alpha PF02002.17 gi|145592492|ref|YP_001154494.1| - 0.0027 17.6 0.1 0.012 15.5 0.0 1.7 1 1 1 2 2 2 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|145592492|ref|YP_001154494.1| - 0.0056 17.0 0.1 0.0088 16.4 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|145592492|ref|YP_001154494.1| - 0.008 16.1 0.2 0.014 15.3 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|145592492|ref|YP_001154494.1| - 0.0096 16.6 0.0 0.013 16.2 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal DUF742 PF05331.11 gi|145592492|ref|YP_001154494.1| - 0.011 15.6 0.1 0.013 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_28 PF13518.6 gi|145592492|ref|YP_001154494.1| - 0.014 15.6 0.2 0.03 14.4 0.1 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_46 PF15977.5 gi|145592492|ref|YP_001154494.1| - 0.015 15.3 0.2 0.024 14.6 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA binding DUF2250 PF10007.9 gi|145592492|ref|YP_001154494.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Herpes_pp85 PF04637.12 gi|145592492|ref|YP_001154494.1| - 0.023 13.1 0.0 0.03 12.8 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) HTH_CodY PF08222.11 gi|145592492|ref|YP_001154494.1| - 0.027 14.0 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain DUF4423 PF14394.6 gi|145592492|ref|YP_001154494.1| - 0.047 13.4 0.0 0.064 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PaaX PF07848.12 gi|145592492|ref|YP_001154494.1| - 0.047 13.9 0.3 0.12 12.7 0.1 1.8 2 0 0 2 2 2 0 PaaX-like protein LexA_DNA_bind PF01726.16 gi|145592492|ref|YP_001154494.1| - 0.049 13.4 0.1 0.081 12.7 0.1 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_38 PF13936.6 gi|145592492|ref|YP_001154494.1| - 0.086 12.6 0.1 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain CM_2 PF01817.21 gi|145592492|ref|YP_001154494.1| - 0.1 13.0 0.1 0.18 12.1 0.1 1.6 1 1 0 1 1 1 0 Chorismate mutase type II DUF5321 PF17254.2 gi|145592493|ref|YP_001154495.1| - 0.04 13.4 1.8 0.054 12.9 1.8 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5321) RRM_8 PF11835.8 gi|145592494|ref|YP_001154496.1| - 0.8 9.9 6.1 9.6 6.5 0.0 2.9 2 1 1 3 3 3 0 RRM-like domain DUF2070 PF09843.9 gi|145592494|ref|YP_001154496.1| - 7 4.8 15.4 8.6 4.5 15.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) zf-P11 PF03854.14 gi|145592495|ref|YP_001154497.1| - 0.11 12.2 2.4 0.19 11.4 2.4 1.4 1 0 0 1 1 1 0 P-11 zinc finger Laminin_EGF PF00053.24 gi|145592495|ref|YP_001154497.1| - 0.74 10.0 7.4 1.4 9.2 7.4 1.4 1 0 0 1 1 1 0 Laminin EGF domain RimK PF08443.11 gi|145592496|ref|YP_001154498.1| - 1.9e-34 118.9 0.0 2.5e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|145592496|ref|YP_001154498.1| - 1.2e-15 57.4 0.0 1.8e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|145592496|ref|YP_001154498.1| - 1.4e-08 34.9 0.0 2.2e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|145592496|ref|YP_001154498.1| - 3.4e-08 33.1 0.0 0.015 14.6 0.0 3.1 1 1 2 3 3 3 3 Sugar-transfer associated ATP-grasp TTL PF03133.15 gi|145592496|ref|YP_001154498.1| - 0.004 16.3 0.0 0.011 14.9 0.0 1.6 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_YheCD PF14398.6 gi|145592496|ref|YP_001154498.1| - 0.016 14.5 0.0 0.19 10.9 0.0 2.1 2 0 0 2 2 2 0 YheC/D like ATP-grasp Rimk_N PF18030.1 gi|145592496|ref|YP_001154498.1| - 0.048 14.1 0.0 0.082 13.3 0.0 1.4 1 0 0 1 1 1 0 RimK PreATP-grasp domain Vta1_C PF18097.1 gi|145592497|ref|YP_001154499.1| - 0.0061 16.2 0.0 0.0098 15.6 0.0 1.3 1 0 0 1 1 1 1 Vta1 C-terminal domain Leu_zip PF15294.6 gi|145592498|ref|YP_001154500.1| - 0.0018 17.9 4.4 0.0026 17.3 4.4 1.3 1 0 0 1 1 1 1 Leucine zipper HrpB7 PF09486.10 gi|145592498|ref|YP_001154500.1| - 0.0019 18.6 7.3 0.33 11.3 7.2 2.1 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) Atg14 PF10186.9 gi|145592498|ref|YP_001154500.1| - 0.006 15.7 7.1 0.0086 15.2 7.1 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 THOC7 PF05615.13 gi|145592498|ref|YP_001154500.1| - 0.011 16.0 4.2 0.017 15.4 4.2 1.4 1 0 0 1 1 1 0 Tho complex subunit 7 DUF1664 PF07889.12 gi|145592498|ref|YP_001154500.1| - 0.033 14.2 3.8 0.071 13.1 1.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) SporV_AA PF12164.8 gi|145592498|ref|YP_001154500.1| - 0.057 13.8 0.9 0.18 12.2 0.2 2.0 2 1 0 2 2 2 0 Stage V sporulation protein AA BLOC1_2 PF10046.9 gi|145592498|ref|YP_001154500.1| - 0.1 12.9 6.0 12 6.3 3.2 2.9 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|145592498|ref|YP_001154500.1| - 0.3 9.9 8.4 0.42 9.4 8.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein DNA_repr_REX1B PF14966.6 gi|145592498|ref|YP_001154500.1| - 0.67 10.7 6.7 2.6 8.7 6.7 2.0 1 1 0 1 1 1 0 DNA repair REX1-B DUF16 PF01519.16 gi|145592498|ref|YP_001154500.1| - 1.4 9.4 5.5 3.4 8.2 4.0 2.5 1 1 1 2 2 2 0 Protein of unknown function DUF16 FlaC_arch PF05377.11 gi|145592498|ref|YP_001154500.1| - 3.4 8.1 6.8 13 6.3 0.3 2.8 2 2 0 2 2 2 0 Flagella accessory protein C (FlaC) YscO PF07321.12 gi|145592498|ref|YP_001154500.1| - 5.8 6.9 15.8 15 5.5 14.5 2.1 1 1 0 1 1 1 0 Type III secretion protein YscO UDG PF03167.19 gi|145592499|ref|YP_001154501.1| - 4.6e-43 146.9 0.0 5.4e-43 146.7 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF2070 PF09843.9 gi|145592501|ref|YP_001154503.1| - 1.6e-99 333.8 1.5 1.8e-99 333.6 1.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF2153 PF09921.9 gi|145592502|ref|YP_001154504.1| - 7.2e-45 151.8 0.3 9e-45 151.5 0.3 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) CorA PF01544.18 gi|145592502|ref|YP_001154504.1| - 0.0087 15.4 0.6 0.011 15.1 0.6 1.1 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein DUF4635 PF15466.6 gi|145592502|ref|YP_001154504.1| - 0.018 14.5 2.3 0.082 12.4 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4635) Glyco_H_20C_C PF18088.1 gi|145592502|ref|YP_001154504.1| - 0.022 14.6 0.7 0.04 13.8 0.7 1.4 1 0 0 1 1 1 0 Glycoside Hydrolase 20C C-terminal domain DUF16 PF01519.16 gi|145592502|ref|YP_001154504.1| - 0.064 13.8 0.1 0.11 13.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 BLOC1_2 PF10046.9 gi|145592502|ref|YP_001154504.1| - 0.077 13.3 1.0 0.17 12.2 0.4 1.8 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SlyX PF04102.12 gi|145592502|ref|YP_001154504.1| - 0.24 12.0 2.9 0.21 12.2 0.8 2.0 2 0 0 2 2 2 0 SlyX BBIP10 PF14777.6 gi|145592502|ref|YP_001154504.1| - 0.48 10.0 2.9 3.4 7.3 1.0 2.3 2 0 0 2 2 2 0 Cilia BBSome complex subunit 10 Met_10 PF02475.16 gi|145592503|ref|YP_001154505.1| - 2.9e-52 177.3 0.0 3.4e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltr_RsmB-F PF01189.17 gi|145592503|ref|YP_001154505.1| - 0.0027 17.4 0.0 0.0042 16.8 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PrmA PF06325.13 gi|145592503|ref|YP_001154505.1| - 0.009 15.4 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|145592503|ref|YP_001154505.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain TRM PF02005.16 gi|145592503|ref|YP_001154505.1| - 0.094 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Na_H_antiport_3 PF07399.11 gi|145592503|ref|YP_001154505.1| - 0.11 11.3 0.1 0.16 10.8 0.1 1.1 1 0 0 1 1 1 0 Putative Na+/H+ antiporter Rad51 PF08423.11 gi|145592504|ref|YP_001154506.1| - 1e-96 323.1 0.0 1.3e-96 322.8 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|145592504|ref|YP_001154506.1| - 3.1e-15 56.3 0.1 4.6e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|145592504|ref|YP_001154506.1| - 4.4e-12 45.8 0.1 1.2e-11 44.5 0.0 1.7 2 1 0 2 2 2 1 KaiC AAA_25 PF13481.6 gi|145592504|ref|YP_001154506.1| - 2.6e-08 33.7 0.1 4.5e-08 32.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain HHH_5 PF14520.6 gi|145592504|ref|YP_001154506.1| - 5.3e-08 33.4 1.4 3.5e-07 30.7 0.7 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain AAA_22 PF13401.6 gi|145592504|ref|YP_001154506.1| - 0.00029 21.1 0.0 0.00063 20.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|145592504|ref|YP_001154506.1| - 0.0044 17.6 0.1 0.014 15.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain BAF PF02961.14 gi|145592504|ref|YP_001154506.1| - 0.0053 17.2 0.1 0.012 16.1 0.1 1.5 1 0 0 1 1 1 1 Barrier to autointegration factor PAXNEB PF05625.11 gi|145592504|ref|YP_001154506.1| - 0.0064 15.7 0.1 0.26 10.4 0.0 2.2 2 0 0 2 2 2 1 PAXNEB protein HhH-GPD PF00730.25 gi|145592504|ref|YP_001154506.1| - 0.0065 16.9 0.0 0.017 15.6 0.0 1.7 1 1 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein SRP54 PF00448.22 gi|145592504|ref|YP_001154506.1| - 0.052 13.2 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|145592504|ref|YP_001154506.1| - 0.083 12.7 0.1 0.25 11.1 0.0 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DNA_pol_lambd_f PF10391.9 gi|145592504|ref|YP_001154506.1| - 0.19 11.6 0.5 4 7.4 0.0 2.5 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda Flavin_Reduct PF01613.18 gi|145592505|ref|YP_001154507.1| - 1.9e-23 83.2 0.0 2.2e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Radical_SAM PF04055.21 gi|145592507|ref|YP_001154509.1| - 1.7e-14 54.6 0.4 1.1e-13 51.9 0.0 2.4 3 0 0 3 3 3 1 Radical SAM superfamily zf-Di19 PF05605.12 gi|145592509|ref|YP_001154511.1| - 1.5e-08 34.8 6.3 8.9e-07 29.1 1.9 2.5 2 1 0 2 2 2 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|145592509|ref|YP_001154511.1| - 4.2e-08 33.2 13.0 1.5e-05 25.1 0.1 3.7 4 0 0 4 4 3 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|145592509|ref|YP_001154511.1| - 8.4e-08 32.4 13.0 0.00022 21.8 0.1 3.5 4 0 0 4 4 3 2 C2H2-type zinc finger zf_UBZ PF18439.1 gi|145592509|ref|YP_001154511.1| - 0.0015 18.1 6.7 1.4 8.6 0.9 3.6 3 1 0 3 3 3 2 Ubiquitin-Binding Zinc Finger zf-C2HC_2 PF13913.6 gi|145592509|ref|YP_001154511.1| - 0.0025 17.7 8.7 0.13 12.2 0.0 3.9 3 1 1 4 4 4 1 zinc-finger of a C2HC-type DUF2318 PF10080.9 gi|145592509|ref|YP_001154511.1| - 0.0026 17.9 8.4 0.03 14.5 0.9 2.8 1 1 2 3 3 3 1 Predicted membrane protein (DUF2318) DZR PF12773.7 gi|145592509|ref|YP_001154511.1| - 0.0028 17.7 5.9 0.3 11.1 6.2 2.3 1 1 0 1 1 1 1 Double zinc ribbon YacG PF03884.14 gi|145592509|ref|YP_001154511.1| - 0.0031 17.2 4.0 0.35 10.6 0.1 2.6 3 0 0 3 3 2 2 DNA gyrase inhibitor YacG Sgf11 PF08209.11 gi|145592509|ref|YP_001154511.1| - 0.004 16.7 3.9 3.9 7.1 0.3 3.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) Prok-RING_4 PF14447.6 gi|145592509|ref|YP_001154511.1| - 0.021 14.7 6.0 0.42 10.5 0.1 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 zf-C2H2_2 PF12756.7 gi|145592509|ref|YP_001154511.1| - 0.021 15.1 7.3 2.3 8.6 0.5 3.3 1 1 1 3 3 3 0 C2H2 type zinc-finger (2 copies) zf-C2H2_6 PF13912.6 gi|145592509|ref|YP_001154511.1| - 0.023 14.7 0.1 0.023 14.7 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger RNF220 PF15926.5 gi|145592509|ref|YP_001154511.1| - 0.03 13.9 0.4 0.03 13.9 0.4 2.2 1 1 2 3 3 3 0 E3 ubiquitin-protein ligase RNF220 zf-CpG_bind_C PF12269.8 gi|145592509|ref|YP_001154511.1| - 0.038 13.8 6.8 3.6 7.3 0.3 3.0 1 1 2 3 3 3 0 CpG binding protein zinc finger C terminal domain Yippee-Mis18 PF03226.14 gi|145592509|ref|YP_001154511.1| - 0.064 13.5 2.3 0.1 12.9 2.3 1.4 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zf-C2H2_9 PF16293.5 gi|145592509|ref|YP_001154511.1| - 0.066 13.1 4.2 3.9 7.4 0.3 3.1 2 1 0 2 2 2 0 C2H2 type zinc-finger (1 copy) DUF1644 PF07800.12 gi|145592509|ref|YP_001154511.1| - 0.069 13.2 3.1 0.11 12.6 3.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1644) zf-C3HC4_3 PF13920.6 gi|145592509|ref|YP_001154511.1| - 0.073 12.9 7.9 2.1 8.3 0.1 3.2 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF2039 PF10217.9 gi|145592509|ref|YP_001154511.1| - 0.086 13.2 8.9 0.16 12.3 8.9 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) RNHCP PF12647.7 gi|145592509|ref|YP_001154511.1| - 0.088 12.8 5.5 1.4 8.9 0.4 2.7 3 0 0 3 3 3 0 RNHCP domain GAGA PF09237.11 gi|145592509|ref|YP_001154511.1| - 0.094 12.5 0.1 0.094 12.5 0.1 2.3 3 0 0 3 3 2 0 GAGA factor PRP21_like_P PF12230.8 gi|145592509|ref|YP_001154511.1| - 0.1 12.5 0.2 0.15 11.9 0.2 1.4 1 1 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein zinc-ribbons_6 PF07191.12 gi|145592509|ref|YP_001154511.1| - 0.12 12.4 6.8 1.5 8.8 6.8 2.5 1 1 0 1 1 1 0 zinc-ribbons TackOD1 PF18551.1 gi|145592509|ref|YP_001154511.1| - 0.12 12.0 5.8 0.59 9.8 0.5 2.4 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zf-RING_5 PF14634.6 gi|145592509|ref|YP_001154511.1| - 0.13 12.2 5.7 7.7 6.6 0.0 3.1 3 0 0 3 3 3 0 zinc-RING finger domain zf_C2HC_14 PF18574.1 gi|145592509|ref|YP_001154511.1| - 0.2 11.5 3.1 3.2 7.6 0.2 2.5 2 0 0 2 2 2 0 C2HC Zing finger domain DUF629 PF04780.12 gi|145592509|ref|YP_001154511.1| - 0.21 10.1 2.8 1.8 7.0 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF629) DUF2256 PF10013.9 gi|145592509|ref|YP_001154511.1| - 0.3 11.2 0.3 0.3 11.2 0.3 3.4 4 0 0 4 4 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Zn-ribbon_8 PF09723.10 gi|145592509|ref|YP_001154511.1| - 0.32 11.2 7.5 29 4.9 0.0 3.3 2 1 0 2 2 2 0 Zinc ribbon domain zf-TFIIIC PF12660.7 gi|145592509|ref|YP_001154511.1| - 0.32 11.0 5.0 2.3 8.2 4.4 2.6 1 1 0 1 1 1 0 Putative zinc-finger of transcription factor IIIC complex zf-UDP PF14569.6 gi|145592509|ref|YP_001154511.1| - 0.32 11.1 8.4 2.8 8.1 6.1 3.0 2 1 0 2 2 2 0 Zinc-binding RING-finger Actin_micro PF17003.5 gi|145592509|ref|YP_001154511.1| - 0.54 9.4 3.6 3.7 6.6 0.2 2.5 1 1 2 3 3 3 0 Putative actin-like family DUF393 PF04134.12 gi|145592509|ref|YP_001154511.1| - 0.61 11.4 3.3 4.6 8.6 0.1 2.3 3 0 0 3 3 2 0 Protein of unknown function, DUF393 Mut7-C PF01927.16 gi|145592509|ref|YP_001154511.1| - 0.61 10.2 4.3 0.23 11.6 0.7 1.8 1 1 1 2 2 2 0 Mut7-C RNAse domain OrsD PF12013.8 gi|145592509|ref|YP_001154511.1| - 0.62 10.5 9.2 0.52 10.8 0.6 2.9 1 1 2 3 3 3 0 Orsellinic acid/F9775 biosynthesis cluster protein D C1_2 PF03107.16 gi|145592509|ref|YP_001154511.1| - 0.82 10.0 10.4 21 5.5 0.3 3.7 2 1 2 4 4 4 0 C1 domain Endonuclease_7 PF02945.15 gi|145592509|ref|YP_001154511.1| - 0.92 9.5 7.2 0.57 10.1 4.5 2.0 1 1 1 2 2 2 0 Recombination endonuclease VII DUF4428 PF14471.6 gi|145592509|ref|YP_001154511.1| - 1.4 8.9 7.6 4.3 7.3 0.1 3.3 4 0 0 4 4 3 0 Domain of unknown function (DUF4428) zf-FLZ PF04570.14 gi|145592509|ref|YP_001154511.1| - 1.9 8.0 5.7 5.7 6.5 0.2 3.3 3 1 1 4 4 4 0 zinc-finger of the FCS-type, C2-C2 zf-C2H2_jaz PF12171.8 gi|145592509|ref|YP_001154511.1| - 2 8.8 0.0 2 8.8 0.0 4.1 4 1 0 4 4 3 0 Zinc-finger double-stranded RNA-binding HNH PF01844.23 gi|145592509|ref|YP_001154511.1| - 2 8.6 6.6 9.7 6.5 0.9 3.4 3 1 0 3 3 2 0 HNH endonuclease zf-BED PF02892.15 gi|145592509|ref|YP_001154511.1| - 2.7 8.1 12.5 10 6.2 0.5 3.3 1 1 2 3 3 3 0 BED zinc finger Stc1 PF12898.7 gi|145592509|ref|YP_001154511.1| - 3.1 8.4 8.1 12 6.5 1.6 2.3 1 1 1 2 2 2 0 Stc1 domain DUF2225 PF09986.9 gi|145592509|ref|YP_001154511.1| - 3.9 7.1 7.4 0.56 9.9 0.7 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-met PF12874.7 gi|145592509|ref|YP_001154511.1| - 4.1 7.9 15.5 14 6.3 0.1 4.5 4 1 0 4 4 3 0 Zinc-finger of C2H2 type Zn_ribbon_SprT PF17283.2 gi|145592509|ref|YP_001154511.1| - 7.4 6.6 11.1 1.2 9.1 3.8 2.8 2 1 1 3 3 3 0 SprT-like zinc ribbon domain CarS-like PF01864.17 gi|145592510|ref|YP_001154512.1| - 1.1e-40 139.5 1.9 4.1e-40 137.6 1.9 1.7 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|145592510|ref|YP_001154512.1| - 0.00032 20.5 0.1 0.00066 19.5 0.1 1.4 1 0 0 1 1 1 1 Cytidylyltransferase family Rick_17kDa_Anti PF05433.15 gi|145592510|ref|YP_001154512.1| - 0.14 12.0 0.2 0.14 12.0 0.2 1.9 2 0 0 2 2 2 0 Glycine zipper 2TM domain ATP-synt_F PF01990.17 gi|145592511|ref|YP_001154513.1| - 1.9e-13 50.5 0.1 2.3e-13 50.3 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit vATP-synt_E PF01991.18 gi|145592512|ref|YP_001154514.1| - 3.4e-15 56.0 5.9 1e-14 54.4 5.9 1.7 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ACCA PF03255.14 gi|145592512|ref|YP_001154514.1| - 0.0036 17.2 0.2 0.0069 16.3 0.2 1.4 1 0 0 1 1 1 1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Glyco_hydro_85 PF03644.13 gi|145592512|ref|YP_001154514.1| - 0.23 10.9 0.2 2.2 7.6 0.1 2.0 1 1 1 2 2 2 0 Glycosyl hydrolase family 85 ATP-synt_ab PF00006.25 gi|145592513|ref|YP_001154515.1| - 1.3e-78 263.5 0.0 1.7e-78 263.1 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|145592513|ref|YP_001154515.1| - 7.7e-39 132.3 0.0 1.2e-38 131.6 0.0 1.3 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|145592513|ref|YP_001154515.1| - 9.8e-13 48.4 0.2 2.3e-12 47.2 0.2 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|145592513|ref|YP_001154515.1| - 0.011 16.0 0.0 0.022 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|145592513|ref|YP_001154515.1| - 0.094 12.9 0.0 2.8 8.2 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 RNA_pol_Rpb5_C PF01191.19 gi|145592514|ref|YP_001154516.1| - 5.4e-25 87.1 0.0 6.4e-25 86.8 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|145592515|ref|YP_001154517.1| - 2.1e-133 445.2 0.0 2.8e-133 444.8 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|145592515|ref|YP_001154517.1| - 5.2e-46 156.7 0.0 7.3e-46 156.2 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|145592515|ref|YP_001154517.1| - 3.6e-29 101.7 0.0 6.5e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|145592515|ref|YP_001154517.1| - 1.8e-28 98.7 0.0 5.3e-28 97.3 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|145592515|ref|YP_001154517.1| - 3.2e-27 94.5 0.1 1.8e-26 92.1 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|145592515|ref|YP_001154517.1| - 2.2e-20 72.7 0.7 5.1e-20 71.5 0.7 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|145592515|ref|YP_001154517.1| - 7.5e-10 39.2 2.1 1.1e-08 35.5 2.5 2.7 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb2_45 PF10385.9 gi|145592515|ref|YP_001154517.1| - 0.12 12.6 0.1 0.96 9.8 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase beta subunit external 1 domain RNA_pol_Rpb1_1 PF04997.12 gi|145592516|ref|YP_001154518.1| - 2.6e-97 325.9 0.0 3.6e-97 325.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|145592516|ref|YP_001154518.1| - 3.3e-73 245.4 0.0 5.3e-73 244.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|145592516|ref|YP_001154518.1| - 8.3e-32 110.3 0.0 1.7e-31 109.3 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|145592516|ref|YP_001154518.1| - 2.7e-26 91.6 0.0 5e-26 90.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|145592516|ref|YP_001154518.1| - 3.7e-25 88.9 0.1 6.2e-25 88.1 0.1 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-RING_7 PF02591.15 gi|145592516|ref|YP_001154518.1| - 0.014 15.6 7.2 0.26 11.5 0.4 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain CpXC PF14353.6 gi|145592516|ref|YP_001154518.1| - 0.018 15.1 4.8 0.24 11.5 0.0 3.6 3 1 0 3 3 3 0 CpXC protein Auto_anti-p27 PF06677.12 gi|145592516|ref|YP_001154518.1| - 0.023 14.8 0.8 0.42 10.8 0.1 3.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.21 gi|145592516|ref|YP_001154518.1| - 0.051 13.8 0.4 0.18 12.1 0.1 2.0 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|145592516|ref|YP_001154518.1| - 0.17 12.0 4.7 0.88 9.6 0.2 2.9 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|145592516|ref|YP_001154518.1| - 0.17 11.3 8.7 2.1 7.8 0.2 3.6 4 0 0 4 4 4 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|145592516|ref|YP_001154518.1| - 0.31 11.7 10.9 5.1 7.9 0.4 3.9 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.10 gi|145592516|ref|YP_001154518.1| - 0.42 10.8 6.9 13 6.0 0.1 3.4 2 1 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|145592516|ref|YP_001154518.1| - 1 9.3 4.7 47 4.0 0.3 3.5 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|145592516|ref|YP_001154518.1| - 1.3 9.0 3.5 28 4.7 0.2 3.3 3 0 0 3 3 3 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|145592516|ref|YP_001154518.1| - 4.5 7.3 10.1 1.6 8.8 0.3 3.5 4 0 0 4 4 3 0 Transposase zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.17 gi|145592517|ref|YP_001154519.1| - 2.2e-51 174.9 0.0 2.9e-51 174.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF211 PF02680.14 gi|145592517|ref|YP_001154519.1| - 0.079 13.1 1.7 2.4 8.4 0.1 2.9 2 1 0 2 2 2 0 Uncharacterized ArCR, COG1888 HMA PF00403.26 gi|145592517|ref|YP_001154519.1| - 0.085 13.3 6.9 5.6 7.5 1.0 3.9 2 1 2 4 4 4 0 Heavy-metal-associated domain PCI PF01399.27 gi|145592517|ref|YP_001154519.1| - 0.12 12.9 0.2 0.49 10.9 0.1 2.0 2 0 0 2 2 2 0 PCI domain Ribosomal_L7Ae PF01248.26 gi|145592518|ref|YP_001154520.1| - 7.3e-16 57.7 0.0 8.5e-16 57.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Peripla_BP_4 PF13407.6 gi|145592518|ref|YP_001154520.1| - 0.098 12.2 0.1 0.11 12.0 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain KH_2 PF07650.17 gi|145592519|ref|YP_001154521.1| - 1.1e-19 70.0 4.6 1.9e-14 53.2 0.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|145592519|ref|YP_001154521.1| - 2.3e-10 40.4 4.8 2.7e-10 40.2 0.9 2.2 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|145592519|ref|YP_001154521.1| - 4.8e-05 23.2 0.5 0.0072 16.2 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|145592519|ref|YP_001154521.1| - 0.00044 20.0 1.9 0.09 12.6 0.1 2.6 2 1 0 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.25 gi|145592520|ref|YP_001154522.1| - 2e-43 146.6 0.2 2.6e-43 146.3 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 RNA_pol_A_bac PF01000.26 gi|145592521|ref|YP_001154523.1| - 5.4e-25 87.9 0.0 8.8e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|145592521|ref|YP_001154523.1| - 9.7e-14 50.6 0.0 1.7e-13 49.8 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain NPCBM PF08305.11 gi|145592521|ref|YP_001154523.1| - 0.026 14.7 0.0 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 NPCBM/NEW2 domain Ribosomal_L18 PF17135.4 gi|145592522|ref|YP_001154524.1| - 3.4e-09 36.4 0.0 4.3e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|145592522|ref|YP_001154524.1| - 6.7e-09 36.5 0.9 1.2e-08 35.7 0.9 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L13 PF00572.18 gi|145592523|ref|YP_001154525.1| - 5.3e-13 49.3 1.3 1.8e-11 44.4 1.3 2.3 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|145592524|ref|YP_001154526.1| - 3.2e-32 111.6 0.1 4.2e-32 111.2 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|145592525|ref|YP_001154527.1| - 4.3e-27 94.2 0.2 4.8e-27 94.0 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|145592525|ref|YP_001154527.1| - 0.022 15.0 0.2 0.04 14.2 0.2 1.5 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) LSM PF01423.22 gi|145592526|ref|YP_001154528.1| - 1.6e-17 63.0 0.0 1.8e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|145592526|ref|YP_001154528.1| - 0.018 15.2 0.1 0.022 14.9 0.1 1.1 1 0 0 1 1 1 0 Ataxin 2 SM domain AdoMet_Synthase PF01941.19 gi|145592527|ref|YP_001154529.1| - 9.4e-173 574.5 1.8 1.1e-172 574.4 1.8 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|145592527|ref|YP_001154529.1| - 0.1 13.3 4.7 0.88 10.3 0.0 3.3 3 1 1 4 4 4 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.13 gi|145592528|ref|YP_001154530.1| - 1.7e-41 141.3 0.8 3.9e-41 140.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF460) Cep57_MT_bd PF06657.13 gi|145592528|ref|YP_001154530.1| - 3.2e-06 27.5 3.5 3.2e-06 27.5 3.5 2.6 3 0 0 3 3 1 1 Centrosome microtubule-binding domain of Cep57 bZIP_1 PF00170.21 gi|145592528|ref|YP_001154530.1| - 0.0001 22.3 8.8 0.00012 22.1 1.8 2.7 2 0 0 2 2 2 1 bZIP transcription factor ADIP PF11559.8 gi|145592528|ref|YP_001154530.1| - 0.00064 19.8 3.7 0.0015 18.6 3.7 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding UPF0242 PF06785.11 gi|145592528|ref|YP_001154530.1| - 0.00075 19.6 5.5 0.0017 18.5 5.5 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus GAS PF13851.6 gi|145592528|ref|YP_001154530.1| - 0.0031 16.9 7.3 0.0031 16.9 7.3 2.1 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.22 gi|145592528|ref|YP_001154530.1| - 0.0061 16.8 5.8 0.0061 16.8 5.8 3.4 2 1 1 3 3 3 1 Seryl-tRNA synthetase N-terminal domain RNase_E_G PF10150.9 gi|145592528|ref|YP_001154530.1| - 0.0074 15.7 3.6 0.016 14.6 3.1 1.8 1 1 0 1 1 1 1 Ribonuclease E/G family Cnn_1N PF07989.11 gi|145592528|ref|YP_001154530.1| - 0.017 15.3 0.9 0.017 15.3 0.9 2.3 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 TMF_TATA_bd PF12325.8 gi|145592528|ref|YP_001154530.1| - 0.017 15.3 3.8 0.078 13.2 3.8 2.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding CENP-F_leu_zip PF10473.9 gi|145592528|ref|YP_001154530.1| - 0.039 14.0 4.7 0.12 12.4 4.7 1.8 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.11 gi|145592528|ref|YP_001154530.1| - 0.044 14.0 8.5 0.11 12.7 8.5 1.7 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) KASH_CCD PF14662.6 gi|145592528|ref|YP_001154530.1| - 0.074 12.9 5.4 0.17 11.7 5.4 1.5 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH HALZ PF02183.18 gi|145592528|ref|YP_001154530.1| - 0.099 12.9 4.7 0.75 10.1 1.8 3.2 1 1 1 2 2 2 0 Homeobox associated leucine zipper DUF1722 PF08349.11 gi|145592528|ref|YP_001154530.1| - 0.1 12.9 0.6 28 5.0 0.0 3.5 4 0 0 4 4 3 0 Protein of unknown function (DUF1722) CENP-H PF05837.12 gi|145592528|ref|YP_001154530.1| - 0.12 12.8 3.6 0.13 12.7 1.6 2.1 2 0 0 2 2 1 0 Centromere protein H (CENP-H) Globin PF00042.22 gi|145592528|ref|YP_001154530.1| - 0.16 12.5 0.2 0.81 10.3 0.1 2.2 2 0 0 2 2 1 0 Globin Lectin_N PF03954.14 gi|145592528|ref|YP_001154530.1| - 0.17 11.6 0.6 0.35 10.6 0.6 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain DivIC PF04977.15 gi|145592528|ref|YP_001154530.1| - 0.19 11.5 9.0 1 9.2 2.6 3.1 2 0 0 2 2 2 0 Septum formation initiator DUF4407 PF14362.6 gi|145592528|ref|YP_001154530.1| - 0.19 11.1 6.6 7.4 5.8 5.7 2.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1542 PF07564.11 gi|145592528|ref|YP_001154530.1| - 0.22 11.6 1.5 25 5.1 0.0 2.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1542) Prefoldin_2 PF01920.20 gi|145592528|ref|YP_001154530.1| - 0.23 11.4 10.9 6.5 6.8 0.2 3.6 2 1 1 3 3 3 0 Prefoldin subunit OmpH PF03938.14 gi|145592528|ref|YP_001154530.1| - 0.8 10.0 16.4 0.29 11.5 8.0 2.7 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Ax_dynein_light PF10211.9 gi|145592528|ref|YP_001154530.1| - 0.95 9.4 8.2 0.2 11.6 4.0 2.0 2 0 0 2 2 2 0 Axonemal dynein light chain DUF2959 PF11172.8 gi|145592528|ref|YP_001154530.1| - 0.98 9.5 7.0 0.24 11.5 3.0 2.0 2 1 1 3 3 2 0 Protein of unknown function (DUF2959) ZapB PF06005.12 gi|145592528|ref|YP_001154530.1| - 1.1 9.7 13.6 1 9.8 2.7 2.9 3 0 0 3 3 2 0 Cell division protein ZapB Wtap PF17098.5 gi|145592528|ref|YP_001154530.1| - 1.5 8.8 7.3 5.2 7.0 7.3 1.9 1 1 0 1 1 1 0 WTAP/Mum2p family Mod_r PF07200.13 gi|145592528|ref|YP_001154530.1| - 1.5 8.9 11.9 10 6.2 0.1 2.8 2 1 0 3 3 2 0 Modifier of rudimentary (Mod(r)) protein TMF_DNA_bd PF12329.8 gi|145592528|ref|YP_001154530.1| - 1.7 8.7 8.7 3.3 7.8 2.3 2.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Snapin_Pallidin PF14712.6 gi|145592528|ref|YP_001154530.1| - 1.9 9.0 5.4 9.1 6.8 4.5 2.6 3 0 0 3 3 2 0 Snapin/Pallidin bZIP_2 PF07716.15 gi|145592528|ref|YP_001154530.1| - 2.5 8.2 12.4 0.3 11.2 3.7 2.9 2 0 0 2 2 2 0 Basic region leucine zipper FapA PF03961.13 gi|145592528|ref|YP_001154530.1| - 3.2 6.3 7.3 1.6 7.2 4.4 2.0 2 1 1 3 3 3 0 Flagellar Assembly Protein A DUF4140 PF13600.6 gi|145592528|ref|YP_001154530.1| - 4.4 7.8 10.1 13 6.3 1.6 3.3 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF465 PF04325.13 gi|145592528|ref|YP_001154530.1| - 4.8 7.3 12.1 1.2 9.2 0.4 3.1 3 0 0 3 3 2 0 Protein of unknown function (DUF465) ABC_tran_CTD PF16326.5 gi|145592528|ref|YP_001154530.1| - 5.9 7.2 13.6 12 6.2 11.2 2.8 2 1 0 2 2 1 0 ABC transporter C-terminal domain AAA_23 PF13476.6 gi|145592528|ref|YP_001154530.1| - 7.9 6.9 7.6 20 5.6 7.6 1.7 1 0 0 1 1 1 0 AAA domain YabA PF06156.13 gi|145592528|ref|YP_001154530.1| - 8.4 7.1 8.3 33 5.2 4.7 2.8 2 1 1 3 3 2 0 Initiation control protein YabA RIO1 PF01163.22 gi|145592529|ref|YP_001154531.1| - 1.4e-36 125.9 0.0 2e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|145592529|ref|YP_001154531.1| - 4.5e-26 90.9 0.4 8.9e-26 89.9 0.4 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|145592529|ref|YP_001154531.1| - 4.8e-07 29.9 1.2 0.00094 19.2 0.1 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|145592529|ref|YP_001154531.1| - 0.0042 16.5 0.0 0.0094 15.3 0.0 1.5 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|145592529|ref|YP_001154531.1| - 0.04 13.5 0.0 0.3 10.7 0.0 2.0 2 0 0 2 2 2 0 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_fungal PF17667.1 gi|145592529|ref|YP_001154531.1| - 0.18 10.5 0.0 0.25 10.1 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase UPF0179 PF03684.13 gi|145592530|ref|YP_001154532.1| - 1.6e-32 112.3 4.0 2e-32 112.0 4.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DUF357 PF04010.13 gi|145592531|ref|YP_001154533.1| - 2.2e-18 66.1 1.2 3.7e-18 65.4 1.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_like PF01467.26 gi|145592531|ref|YP_001154533.1| - 1.6e-11 44.6 0.0 6.6e-11 42.6 0.0 1.8 2 0 0 2 2 2 1 Cytidylyltransferase-like Pantoate_ligase PF02569.15 gi|145592531|ref|YP_001154533.1| - 0.011 14.9 0.1 3.6 6.7 0.0 2.2 2 0 0 2 2 2 0 Pantoate-beta-alanine ligase RPN7 PF10602.9 gi|145592531|ref|YP_001154533.1| - 0.028 14.1 0.1 0.046 13.4 0.1 1.4 1 0 0 1 1 1 0 26S proteasome subunit RPN7 Mur_ligase PF01225.25 gi|145592531|ref|YP_001154533.1| - 0.067 13.5 0.1 0.53 10.6 0.0 2.3 3 0 0 3 3 3 0 Mur ligase family, catalytic domain Endonuclease_5 PF04493.14 gi|145592532|ref|YP_001154534.1| - 2.5e-47 161.1 0.5 3.9e-47 160.5 0.5 1.3 1 0 0 1 1 1 1 Endonuclease V DUF2694 PF10904.8 gi|145592532|ref|YP_001154534.1| - 0.032 14.3 0.2 0.08 13.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2694) Usp PF00582.26 gi|145592533|ref|YP_001154535.1| - 1.6e-35 122.7 5.8 3.2e-35 121.7 5.8 1.5 1 1 0 1 1 1 1 Universal stress protein family F_bP_aldolase PF01116.20 gi|145592533|ref|YP_001154535.1| - 0.012 15.1 0.4 1.3 8.4 0.0 2.0 1 1 1 2 2 2 0 Fructose-bisphosphate aldolase class-II Pilus_CpaD PF09476.10 gi|145592533|ref|YP_001154535.1| - 0.022 14.5 1.2 0.043 13.5 0.7 1.6 1 1 1 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) ETF PF01012.21 gi|145592533|ref|YP_001154535.1| - 0.027 14.4 5.4 0.034 14.0 5.4 1.1 1 0 0 1 1 1 0 Electron transfer flavoprotein domain Dak1 PF02733.17 gi|145592533|ref|YP_001154535.1| - 0.03 13.2 0.3 0.031 13.2 0.3 1.2 1 0 0 1 1 1 0 Dak1 domain DAGK_cat PF00781.24 gi|145592533|ref|YP_001154535.1| - 0.036 13.7 0.1 0.069 12.8 0.1 1.4 1 1 0 1 1 1 0 Diacylglycerol kinase catalytic domain SIS PF01380.22 gi|145592533|ref|YP_001154535.1| - 0.061 13.2 0.2 0.72 9.7 0.2 2.1 1 1 1 2 2 2 0 SIS domain HGTP_anticodon PF03129.20 gi|145592533|ref|YP_001154535.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Anticodon binding domain DUF5619 PF18505.1 gi|145592533|ref|YP_001154535.1| - 0.17 11.9 1.3 0.59 10.1 0.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5619) BPD_transp_1 PF00528.22 gi|145592534|ref|YP_001154536.1| - 3.9e-10 39.8 18.9 3.9e-10 39.8 18.9 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|145592535|ref|YP_001154537.1| - 1.1e-08 35.0 22.4 1.1e-08 35.0 22.4 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF443 PF04276.12 gi|145592535|ref|YP_001154537.1| - 0.00043 20.1 5.5 0.00043 20.1 5.5 2.2 3 0 0 3 3 3 1 Protein of unknown function (DUF443) SBP_bac_1 PF01547.25 gi|145592536|ref|YP_001154538.1| - 1e-18 68.3 1.7 1.1e-18 68.3 0.6 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|145592536|ref|YP_001154538.1| - 6e-18 65.7 0.1 8.6e-18 65.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein GGACT PF06094.12 gi|145592536|ref|YP_001154538.1| - 0.052 14.1 0.0 0.12 13.0 0.0 1.6 1 0 0 1 1 1 0 Gamma-glutamyl cyclotransferase, AIG2-like DUF1610 PF07754.11 gi|145592537|ref|YP_001154539.1| - 1.3e-15 57.0 1.0 4e-12 45.8 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-RING_7 PF02591.15 gi|145592537|ref|YP_001154539.1| - 0.0001 22.4 0.7 0.22 11.8 0.1 2.2 2 0 0 2 2 2 2 C4-type zinc ribbon domain zf-ribbon_3 PF13248.6 gi|145592537|ref|YP_001154539.1| - 0.00014 21.1 1.7 0.29 10.6 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|145592537|ref|YP_001154539.1| - 0.00029 20.7 1.1 0.00041 20.2 1.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|145592537|ref|YP_001154539.1| - 0.00071 19.2 2.4 0.19 11.5 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.6 gi|145592537|ref|YP_001154539.1| - 0.002 18.8 2.9 0.054 14.2 0.1 2.2 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.13 gi|145592537|ref|YP_001154539.1| - 0.0022 17.7 2.5 0.0022 17.7 2.5 1.6 2 0 0 2 2 1 1 InsA N-terminal domain Zn-ribbon_8 PF09723.10 gi|145592537|ref|YP_001154539.1| - 0.0025 17.9 7.6 0.01 15.9 3.1 1.7 1 1 1 2 2 2 2 Zinc ribbon domain zf-Mss51 PF13824.6 gi|145592537|ref|YP_001154539.1| - 0.0027 17.8 2.4 0.28 11.3 2.4 2.1 1 1 0 1 1 1 1 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_10 PF10058.9 gi|145592537|ref|YP_001154539.1| - 0.0028 17.3 2.3 0.16 11.7 2.9 2.0 1 1 1 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|145592537|ref|YP_001154539.1| - 0.0036 16.8 5.2 0.029 13.9 5.2 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding zf-H2C2_2 PF13465.6 gi|145592537|ref|YP_001154539.1| - 0.0045 17.4 1.4 1.1 9.9 0.0 2.3 3 0 0 3 3 2 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|145592537|ref|YP_001154539.1| - 0.0099 15.8 4.6 0.022 14.7 4.6 1.5 1 1 0 1 1 1 1 Transposase zinc-ribbon domain tRNA-synt_1f PF01921.18 gi|145592537|ref|YP_001154539.1| - 0.011 14.7 0.0 0.012 14.6 0.0 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (K) HypA PF01155.19 gi|145592537|ref|YP_001154539.1| - 0.011 15.7 0.1 0.013 15.5 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|145592537|ref|YP_001154539.1| - 0.013 15.5 0.2 0.02 14.9 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.20 gi|145592537|ref|YP_001154539.1| - 0.015 15.3 0.3 4.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin zf_UBZ PF18439.1 gi|145592537|ref|YP_001154539.1| - 0.016 14.8 1.3 2.5 7.8 0.2 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|145592537|ref|YP_001154539.1| - 0.018 14.8 2.6 0.85 9.4 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-C2H2 PF00096.26 gi|145592537|ref|YP_001154539.1| - 0.019 15.4 3.1 2.9 8.5 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type PhnA_Zn_Ribbon PF08274.12 gi|145592537|ref|YP_001154539.1| - 0.021 14.8 0.3 2 8.4 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|145592537|ref|YP_001154539.1| - 0.023 14.6 1.9 0.042 13.8 1.9 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Sgf11 PF08209.11 gi|145592537|ref|YP_001154539.1| - 0.024 14.2 1.7 0.45 10.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_5 PF13719.6 gi|145592537|ref|YP_001154539.1| - 0.024 14.4 1.3 0.036 13.8 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|145592537|ref|YP_001154539.1| - 0.029 13.7 1.4 0.049 13.0 1.4 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.18 gi|145592537|ref|YP_001154539.1| - 0.032 14.1 1.9 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Elf1 PF05129.13 gi|145592537|ref|YP_001154539.1| - 0.035 14.1 1.0 0.08 13.0 1.0 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DUF35_N PF12172.8 gi|145592537|ref|YP_001154539.1| - 0.035 14.0 1.8 6.3 6.8 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Ogr_Delta PF04606.12 gi|145592537|ref|YP_001154539.1| - 0.046 13.7 3.9 0.64 10.0 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.13 gi|145592537|ref|YP_001154539.1| - 0.048 13.3 0.8 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C4_Topoisom PF01396.19 gi|145592537|ref|YP_001154539.1| - 0.052 13.3 3.2 1.2 9.0 0.1 2.5 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger zf-IS66 PF13005.7 gi|145592537|ref|YP_001154539.1| - 0.062 13.7 2.2 7.3 7.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.6 gi|145592537|ref|YP_001154539.1| - 0.073 13.6 1.6 0.12 12.9 1.6 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Nudix_N_2 PF14803.6 gi|145592537|ref|YP_001154539.1| - 0.085 12.8 2.9 1.1 9.3 2.9 2.1 1 1 0 1 1 1 0 Nudix N-terminal Zn_ribbon_SprT PF17283.2 gi|145592537|ref|YP_001154539.1| - 0.087 12.7 5.2 0.32 11.0 5.2 1.8 1 1 0 1 1 1 0 SprT-like zinc ribbon domain PADR1 PF08063.12 gi|145592537|ref|YP_001154539.1| - 0.088 12.6 2.1 1.5 8.7 0.3 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain DUF2752 PF10825.8 gi|145592537|ref|YP_001154539.1| - 0.11 12.6 1.2 3.1 7.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) A2L_zn_ribbon PF08792.10 gi|145592537|ref|YP_001154539.1| - 0.14 11.9 2.1 3.1 7.6 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF2614 PF11023.8 gi|145592537|ref|YP_001154539.1| - 0.14 12.2 0.9 0.74 9.9 1.1 1.8 1 1 0 1 1 1 0 Zinc-ribbon containing domain Anti-TRAP PF15777.5 gi|145592537|ref|YP_001154539.1| - 0.14 12.1 1.9 1 9.4 1.8 1.9 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF3268 PF11672.8 gi|145592537|ref|YP_001154539.1| - 0.15 12.4 0.6 0.2 12.0 0.6 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain zf-C2H2_3 PF13878.6 gi|145592537|ref|YP_001154539.1| - 0.15 11.9 0.4 2.4 8.1 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DNA_ligase_ZBD PF03119.16 gi|145592537|ref|YP_001154539.1| - 0.18 11.9 5.5 0.84 9.7 5.3 2.0 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf_C2H2_10 PF18414.1 gi|145592537|ref|YP_001154539.1| - 0.21 11.1 2.8 4 7.0 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger UPF0547 PF10571.9 gi|145592537|ref|YP_001154539.1| - 0.29 11.2 5.7 0.76 9.9 0.8 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L37ae PF01780.19 gi|145592537|ref|YP_001154539.1| - 0.29 11.2 2.2 1.9 8.6 2.2 1.9 1 1 0 1 1 1 0 Ribosomal L37ae protein family HalOD2 PF18547.1 gi|145592537|ref|YP_001154539.1| - 0.29 11.1 2.5 12 5.9 0.2 2.2 1 1 1 2 2 2 0 Halobacterial output domain 2 CpXC PF14353.6 gi|145592537|ref|YP_001154539.1| - 0.32 11.0 3.5 3.1 7.8 0.2 2.1 1 1 0 2 2 2 0 CpXC protein zinc_ribbon_9 PF14369.6 gi|145592537|ref|YP_001154539.1| - 0.36 11.1 3.3 3 8.2 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon zf-C2H2_4 PF13894.6 gi|145592537|ref|YP_001154539.1| - 0.42 11.6 2.2 25 6.1 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2_6 PF13912.6 gi|145592537|ref|YP_001154539.1| - 0.44 10.6 1.8 12 6.0 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger DUF3797 PF12677.7 gi|145592537|ref|YP_001154539.1| - 1.1 9.2 5.5 3.1 7.8 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-tcix PF14952.6 gi|145592537|ref|YP_001154539.1| - 1.9 8.2 7.7 5.4 6.7 1.0 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding EF1_GNE PF00736.19 gi|145592538|ref|YP_001154540.1| - 1.3e-14 54.2 0.0 1.4e-14 54.0 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain YcgL PF05166.13 gi|145592538|ref|YP_001154540.1| - 0.11 12.8 0.0 0.16 12.3 0.0 1.2 1 0 0 1 1 1 0 YcgL domain AAA PF00004.29 gi|145592539|ref|YP_001154541.1| - 1.2e-99 329.9 0.0 1.1e-49 168.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|145592539|ref|YP_001154541.1| - 9.8e-35 118.1 1.2 5.4e-17 61.3 0.3 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|145592539|ref|YP_001154541.1| - 1e-28 99.3 0.7 1.4e-27 95.7 2.1 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|145592539|ref|YP_001154541.1| - 3.6e-16 59.3 0.0 2.3e-07 30.7 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|145592539|ref|YP_001154541.1| - 4.1e-14 53.0 0.3 0.00066 20.0 0.0 5.2 3 2 2 5 5 5 2 AAA domain TIP49 PF06068.13 gi|145592539|ref|YP_001154541.1| - 9e-14 51.4 0.8 1.2e-05 24.7 0.0 3.5 3 0 0 3 3 3 2 TIP49 P-loop domain CDC48_2 PF02933.17 gi|145592539|ref|YP_001154541.1| - 1.6e-13 50.2 0.4 4.4e-13 48.8 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_2 PF07724.14 gi|145592539|ref|YP_001154541.1| - 2.6e-13 50.4 0.0 1.5e-07 31.7 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|145592539|ref|YP_001154541.1| - 1.3e-12 47.9 0.6 2.9e-05 24.1 0.1 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|145592539|ref|YP_001154541.1| - 1.9e-12 47.9 0.8 9.2e-06 26.1 0.0 3.7 3 1 0 4 4 3 2 AAA ATPase domain AAA_33 PF13671.6 gi|145592539|ref|YP_001154541.1| - 5.6e-11 42.8 0.0 5.3e-05 23.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain UFD1 PF03152.14 gi|145592539|ref|YP_001154541.1| - 1.1e-10 41.3 0.1 1.9e-10 40.5 0.1 1.5 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 AAA_14 PF13173.6 gi|145592539|ref|YP_001154541.1| - 5.3e-10 39.4 0.0 8e-05 22.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|145592539|ref|YP_001154541.1| - 4.2e-09 36.4 0.0 0.0031 17.3 0.0 2.7 2 0 0 2 2 2 2 IstB-like ATP binding protein Vps4_C PF09336.10 gi|145592539|ref|YP_001154541.1| - 4.7e-09 36.1 0.6 1.7e-05 24.7 0.1 3.3 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_28 PF13521.6 gi|145592539|ref|YP_001154541.1| - 1.1e-08 35.4 0.0 0.0018 18.5 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|145592539|ref|YP_001154541.1| - 4.2e-08 33.8 0.0 0.0076 16.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|145592539|ref|YP_001154541.1| - 4.9e-07 29.3 1.0 0.027 13.9 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|145592539|ref|YP_001154541.1| - 1e-06 28.6 0.0 0.043 13.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|145592539|ref|YP_001154541.1| - 3.3e-06 26.9 0.1 0.087 12.5 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|145592539|ref|YP_001154541.1| - 1.1e-05 25.8 0.0 0.25 11.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase DUF815 PF05673.13 gi|145592539|ref|YP_001154541.1| - 1.6e-05 24.2 0.0 0.12 11.5 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function (DUF815) PhoH PF02562.16 gi|145592539|ref|YP_001154541.1| - 1.8e-05 24.3 0.5 0.2 11.1 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Zeta_toxin PF06414.12 gi|145592539|ref|YP_001154541.1| - 1.8e-05 24.1 0.5 0.22 10.8 0.0 2.9 3 0 0 3 3 3 2 Zeta toxin AAA_7 PF12775.7 gi|145592539|ref|YP_001154541.1| - 2.5e-05 23.8 0.1 0.12 11.8 0.0 2.9 2 1 0 2 2 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|145592539|ref|YP_001154541.1| - 2.7e-05 24.2 0.1 0.39 10.7 0.1 2.7 2 1 1 3 3 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|145592539|ref|YP_001154541.1| - 7.6e-05 22.2 2.3 0.45 9.8 0.1 3.4 3 1 1 4 4 3 2 KaiC ABC_tran PF00005.27 gi|145592539|ref|YP_001154541.1| - 9.9e-05 22.9 0.0 0.41 11.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|145592539|ref|YP_001154541.1| - 0.00026 21.0 0.7 1.1 9.1 0.0 3.6 4 0 0 4 4 4 1 NACHT domain AAA_3 PF07726.11 gi|145592539|ref|YP_001154541.1| - 0.0004 20.3 0.0 0.98 9.3 0.0 2.8 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.17 gi|145592539|ref|YP_001154541.1| - 0.00089 18.4 0.1 1 8.4 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|145592539|ref|YP_001154541.1| - 0.0012 18.9 0.0 1.9 8.6 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF2075 PF09848.9 gi|145592539|ref|YP_001154541.1| - 0.0018 17.6 0.0 0.67 9.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|145592539|ref|YP_001154541.1| - 0.002 17.9 2.1 0.83 9.3 0.0 3.2 4 0 0 4 4 2 1 AAA domain AAA_11 PF13086.6 gi|145592539|ref|YP_001154541.1| - 0.0032 17.3 0.0 1.5 8.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|145592539|ref|YP_001154541.1| - 0.0034 17.1 0.0 0.88 9.3 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|145592539|ref|YP_001154541.1| - 0.0038 17.0 0.0 0.17 11.6 0.0 2.3 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase AAA_17 PF13207.6 gi|145592539|ref|YP_001154541.1| - 0.0043 17.5 0.0 4.6 7.7 0.0 2.7 2 0 0 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|145592539|ref|YP_001154541.1| - 0.0047 16.8 0.0 0.93 9.3 0.0 3.0 2 1 0 2 2 2 1 Bacterial dnaA protein Guanylate_kin PF00625.21 gi|145592539|ref|YP_001154541.1| - 0.0047 16.6 0.3 16 5.1 0.0 3.9 2 2 2 4 4 4 0 Guanylate kinase AAA_19 PF13245.6 gi|145592539|ref|YP_001154541.1| - 0.0052 17.1 4.7 0.96 9.8 0.2 3.3 3 1 1 4 4 3 1 AAA domain ATPase_2 PF01637.18 gi|145592539|ref|YP_001154541.1| - 0.0052 16.7 0.3 2.5 7.9 0.1 3.3 2 2 2 4 4 3 1 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|145592539|ref|YP_001154541.1| - 0.0053 16.3 10.7 2.7 7.5 1.8 4.2 2 2 1 3 3 3 1 AAA domain T2SSE PF00437.20 gi|145592539|ref|YP_001154541.1| - 0.016 14.3 0.0 2.6 7.0 0.0 2.6 2 0 0 2 2 2 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|145592539|ref|YP_001154541.1| - 0.016 14.4 0.0 3.4 6.8 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain Molydop_binding PF01568.21 gi|145592539|ref|YP_001154541.1| - 0.017 15.1 0.3 0.14 12.2 0.2 2.6 3 0 0 3 3 1 0 Molydopterin dinucleotide binding domain TniB PF05621.11 gi|145592539|ref|YP_001154541.1| - 0.021 14.3 0.1 5.6 6.3 0.0 3.4 3 1 1 4 4 3 0 Bacterial TniB protein AAA_29 PF13555.6 gi|145592539|ref|YP_001154541.1| - 0.033 13.9 0.1 8.1 6.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Rad17 PF03215.15 gi|145592539|ref|YP_001154541.1| - 0.038 13.9 0.0 17 5.3 0.0 2.8 2 1 0 2 2 2 0 Rad17 P-loop domain ATP-synt_ab PF00006.25 gi|145592539|ref|YP_001154541.1| - 0.041 13.5 0.0 11 5.6 0.0 2.5 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.15 gi|145592539|ref|YP_001154541.1| - 0.041 13.9 0.0 7.2 6.6 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 gi|145592539|ref|YP_001154541.1| - 0.045 13.5 0.1 11 5.7 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase SKI PF01202.22 gi|145592539|ref|YP_001154541.1| - 0.071 13.2 0.0 22 5.1 0.0 3.0 3 0 0 3 3 3 0 Shikimate kinase AFG1_ATPase PF03969.16 gi|145592539|ref|YP_001154541.1| - 0.082 11.8 0.0 9.1 5.0 0.0 2.4 3 0 0 3 3 2 0 AFG1-like ATPase cobW PF02492.19 gi|145592539|ref|YP_001154541.1| - 0.082 12.5 0.1 13 5.3 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IPT PF01745.16 gi|145592539|ref|YP_001154541.1| - 0.1 12.0 0.5 2.5 7.4 0.1 2.3 2 0 0 2 2 2 0 Isopentenyl transferase MCM PF00493.23 gi|145592539|ref|YP_001154541.1| - 0.11 11.5 0.0 15 4.6 0.0 2.5 2 0 0 2 2 2 0 MCM P-loop domain NTPase_1 PF03266.15 gi|145592539|ref|YP_001154541.1| - 0.13 12.2 6.9 7.8 6.4 0.0 4.7 4 2 2 6 6 4 0 NTPase SRPRB PF09439.10 gi|145592539|ref|YP_001154541.1| - 0.18 11.2 0.0 13 5.2 0.0 2.4 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_6 PF12774.7 gi|145592539|ref|YP_001154541.1| - 0.18 10.7 0.2 20 4.0 0.0 3.2 3 0 0 3 3 3 0 Hydrolytic ATP binding site of dynein motor region Roc PF08477.13 gi|145592539|ref|YP_001154541.1| - 0.2 11.9 0.0 11 6.3 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF348 PF03990.14 gi|145592540|ref|YP_001154542.1| - 0.0017 18.1 0.1 0.0025 17.5 0.1 1.3 1 0 0 1 1 1 1 G5-linked-Ubiquitin-like domain XPG_I PF00867.18 gi|145592541|ref|YP_001154543.1| - 2.7e-28 98.1 0.0 4.8e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|145592541|ref|YP_001154543.1| - 5.4e-24 84.6 0.0 1.1e-23 83.6 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|145592541|ref|YP_001154543.1| - 1.2e-06 29.0 0.0 3.8e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|145592541|ref|YP_001154543.1| - 0.0078 16.8 0.0 0.072 13.7 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix domain NucS PF01939.16 gi|145592541|ref|YP_001154543.1| - 0.093 12.1 0.8 0.34 10.2 0.8 1.8 1 1 0 1 1 1 0 Endonuclease NucS PCMT PF01135.19 gi|145592542|ref|YP_001154544.1| - 1.6e-66 224.1 0.1 1.8e-66 223.9 0.1 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|145592542|ref|YP_001154544.1| - 1.2e-06 28.4 0.0 1.5e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|145592542|ref|YP_001154544.1| - 2.3e-06 26.9 0.0 3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase GCD14 PF08704.10 gi|145592542|ref|YP_001154544.1| - 1.5e-05 24.9 0.0 1.9e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_24 PF13578.6 gi|145592542|ref|YP_001154544.1| - 2.8e-05 25.1 0.0 4.7e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|145592542|ref|YP_001154544.1| - 7.9e-05 23.3 0.0 0.00014 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|145592542|ref|YP_001154544.1| - 0.0028 17.0 0.0 0.0038 16.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|145592542|ref|YP_001154544.1| - 0.0048 17.5 0.0 0.0099 16.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|145592542|ref|YP_001154544.1| - 0.021 14.1 0.0 0.026 13.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase SEF14_adhesin PF06443.11 gi|145592542|ref|YP_001154544.1| - 0.023 14.6 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 SEF14-like adhesin Methyltransf_18 PF12847.7 gi|145592542|ref|YP_001154544.1| - 0.027 14.4 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.17 gi|145592542|ref|YP_001154544.1| - 0.035 13.2 0.0 0.059 12.5 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin Methyltransf_23 PF13489.6 gi|145592542|ref|YP_001154544.1| - 0.06 13.2 0.0 0.094 12.5 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|145592542|ref|YP_001154544.1| - 0.064 12.9 0.0 0.14 11.8 0.0 1.5 1 1 1 2 2 2 0 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|145592542|ref|YP_001154544.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|145592542|ref|YP_001154544.1| - 0.14 12.9 0.0 0.2 12.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|145592542|ref|YP_001154544.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_32 PF13679.6 gi|145592542|ref|YP_001154544.1| - 0.18 11.8 0.0 0.27 11.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA-synt_2 PF00152.20 gi|145592543|ref|YP_001154545.1| - 6.1e-82 275.2 0.0 7.2e-82 275.0 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|145592543|ref|YP_001154545.1| - 3.4e-11 43.0 1.5 5.7e-11 42.3 1.5 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|145592543|ref|YP_001154545.1| - 0.0072 15.8 0.4 1.7 8.0 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Rotavirus_VP1 PF12289.8 gi|145592543|ref|YP_001154545.1| - 0.032 13.3 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 Rotavirus VP1 C-terminal domain Radical_SAM PF04055.21 gi|145592545|ref|YP_001154547.1| - 1.4e-14 54.9 0.0 5.1e-14 53.0 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily HHH_3 PF12836.7 gi|145592545|ref|YP_001154547.1| - 0.00034 20.8 0.0 0.00077 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif T2SSK PF03934.13 gi|145592545|ref|YP_001154547.1| - 0.014 14.8 0.0 0.032 13.6 0.0 1.5 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K Silic_transp PF03842.13 gi|145592546|ref|YP_001154548.1| - 0.049 11.9 0.7 0.049 11.9 0.7 1.0 1 0 0 1 1 1 0 Silicon transporter PTH2 PF01981.16 gi|145592547|ref|YP_001154549.1| - 4e-37 127.1 0.1 4.4e-37 126.9 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TraB PF01963.17 gi|145592547|ref|YP_001154549.1| - 0.013 15.4 0.0 0.016 15.1 0.0 1.1 1 0 0 1 1 1 0 TraB family Peptidase_S8 PF00082.22 gi|145592548|ref|YP_001154550.1| - 7.7e-31 107.5 0.2 1.5e-30 106.5 0.2 1.4 1 0 0 1 1 1 1 Subtilase family EF-hand_5 PF13202.6 gi|145592548|ref|YP_001154550.1| - 0.057 12.9 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 EF hand NUDIX PF00293.28 gi|145592549|ref|YP_001154551.1| - 4.2e-13 49.5 0.7 5.2e-13 49.2 0.7 1.1 1 0 0 1 1 1 1 NUDIX domain NFACT-C PF11923.8 gi|145592549|ref|YP_001154551.1| - 0.074 13.0 0.2 0.1 12.5 0.2 1.3 1 0 0 1 1 1 0 NFACT protein C-terminal domain FAD_binding_2 PF00890.24 gi|145592551|ref|YP_001154553.1| - 2.6e-111 372.7 0.4 3.1e-111 372.4 0.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|145592551|ref|YP_001154553.1| - 2.5e-35 121.2 0.0 4e-35 120.6 0.0 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|145592551|ref|YP_001154553.1| - 0.0034 17.0 1.3 0.013 15.1 0.1 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145592551|ref|YP_001154553.1| - 0.004 16.4 1.2 0.011 15.0 0.4 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|145592551|ref|YP_001154553.1| - 0.17 11.1 0.3 4 6.6 0.3 2.5 3 0 0 3 3 3 0 Thi4 family GIDA PF01134.22 gi|145592551|ref|YP_001154553.1| - 0.87 8.6 2.9 8.6 5.3 3.0 2.1 1 1 0 1 1 1 0 Glucose inhibited division protein A Fer2_3 PF13085.6 gi|145592552|ref|YP_001154554.1| - 2.5e-33 114.3 0.1 4.2e-33 113.6 0.1 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|145592552|ref|YP_001154554.1| - 1.1e-12 48.2 1.7 1.1e-12 48.2 1.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592552|ref|YP_001154554.1| - 2.9e-10 40.1 1.8 2.9e-10 40.1 1.8 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145592552|ref|YP_001154554.1| - 1.2e-07 32.1 1.7 1.2e-07 32.1 1.7 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|145592552|ref|YP_001154554.1| - 2.9e-06 27.8 16.9 0.00011 22.7 6.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592552|ref|YP_001154554.1| - 6e-06 27.1 4.3 7e-06 26.9 1.6 2.3 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|145592552|ref|YP_001154554.1| - 6.8e-06 26.2 3.8 6.8e-06 26.2 3.8 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145592552|ref|YP_001154554.1| - 1.1e-05 25.0 2.1 1.1e-05 25.0 2.1 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|145592552|ref|YP_001154554.1| - 0.00079 19.6 4.0 0.23 11.7 0.3 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|145592552|ref|YP_001154554.1| - 0.00094 19.1 0.2 0.00094 19.1 0.2 2.3 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_4 PF12800.7 gi|145592552|ref|YP_001154554.1| - 0.0017 18.7 0.6 0.0017 18.7 0.6 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|145592552|ref|YP_001154554.1| - 0.0032 17.5 1.4 0.0032 17.5 1.4 3.4 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|145592552|ref|YP_001154554.1| - 0.0054 16.8 3.7 0.0054 16.8 3.7 2.9 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|145592552|ref|YP_001154554.1| - 0.092 13.7 6.3 0.092 13.7 6.3 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|145592552|ref|YP_001154554.1| - 4.7 7.4 16.4 0.93 9.7 9.3 2.6 2 1 0 2 2 1 0 4Fe-4S dicluster domain Sdh_cyt PF01127.22 gi|145592553|ref|YP_001154555.1| - 0.00012 22.1 6.2 0.00022 21.2 6.2 1.5 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit PCNA_C PF02747.15 gi|145592555|ref|YP_001154557.1| - 4.7e-10 39.7 0.0 7.2e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|145592555|ref|YP_001154557.1| - 5.1e-08 32.7 0.0 9.1e-08 31.9 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain HTH_24 PF13412.6 gi|145592557|ref|YP_001154559.1| - 5.4e-09 35.5 1.2 7.4e-09 35.0 1.2 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|145592557|ref|YP_001154559.1| - 1.8e-08 34.1 0.1 2.6e-08 33.6 0.1 1.1 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|145592557|ref|YP_001154559.1| - 3.6e-08 33.3 0.1 4.7e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|145592557|ref|YP_001154559.1| - 4.8e-08 32.8 0.7 6.1e-08 32.4 0.7 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|145592557|ref|YP_001154559.1| - 6.6e-08 32.6 0.0 8.2e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|145592557|ref|YP_001154559.1| - 1.9e-07 30.9 0.5 2.3e-07 30.6 0.5 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|145592557|ref|YP_001154559.1| - 4.4e-07 29.7 0.1 5.9e-07 29.3 0.1 1.1 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|145592557|ref|YP_001154559.1| - 1.8e-06 27.6 0.3 2.3e-06 27.3 0.3 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|145592557|ref|YP_001154559.1| - 5.1e-06 26.3 0.5 6.5e-06 26.0 0.5 1.1 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|145592557|ref|YP_001154559.1| - 6e-06 25.8 1.3 7.2e-06 25.6 1.3 1.1 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|145592557|ref|YP_001154559.1| - 3.4e-05 23.5 0.2 4.4e-05 23.1 0.2 1.1 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.20 gi|145592557|ref|YP_001154559.1| - 4.6e-05 23.7 0.1 5.7e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator TFIIE_alpha PF02002.17 gi|145592557|ref|YP_001154559.1| - 5.4e-05 23.0 0.1 6.6e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_28 PF13518.6 gi|145592557|ref|YP_001154559.1| - 6e-05 23.1 0.1 7.8e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|145592557|ref|YP_001154559.1| - 0.00017 21.2 0.3 0.00024 20.7 0.3 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|145592557|ref|YP_001154559.1| - 0.00018 21.5 0.1 0.00022 21.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|145592557|ref|YP_001154559.1| - 0.00034 20.4 2.2 0.00072 19.3 2.2 1.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain AbiEi_4 PF13338.6 gi|145592557|ref|YP_001154559.1| - 0.00069 19.7 0.6 0.0012 18.9 0.5 1.5 1 1 1 2 2 2 1 Transcriptional regulator, AbiEi antitoxin HTH_20 PF12840.7 gi|145592557|ref|YP_001154559.1| - 0.0011 19.0 0.2 0.0013 18.7 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|145592557|ref|YP_001154559.1| - 0.0012 19.3 0.3 0.0015 19.0 0.3 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|145592557|ref|YP_001154559.1| - 0.0014 18.7 0.0 0.0017 18.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_37 PF13744.6 gi|145592557|ref|YP_001154559.1| - 0.0016 18.3 0.0 0.002 18.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain DUF977 PF06163.11 gi|145592557|ref|YP_001154559.1| - 0.0022 17.9 0.1 0.0024 17.8 0.1 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) HTH_17 PF12728.7 gi|145592557|ref|YP_001154559.1| - 0.0034 17.5 0.2 0.0061 16.7 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|145592557|ref|YP_001154559.1| - 0.0041 17.5 0.0 0.0049 17.2 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_CodY PF08222.11 gi|145592557|ref|YP_001154559.1| - 0.0042 16.6 0.1 0.0066 16.0 0.1 1.3 1 0 0 1 1 1 1 CodY helix-turn-helix domain Crp PF00325.20 gi|145592557|ref|YP_001154559.1| - 0.0076 15.9 0.4 0.013 15.1 0.4 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.16 gi|145592557|ref|YP_001154559.1| - 0.0084 15.6 0.5 0.011 15.2 0.5 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Replic_Relax PF13814.6 gi|145592557|ref|YP_001154559.1| - 0.01 15.9 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_38 PF13936.6 gi|145592557|ref|YP_001154559.1| - 0.014 15.1 0.5 0.021 14.6 0.5 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|145592557|ref|YP_001154559.1| - 0.014 15.4 0.2 0.02 15.0 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix LexA_DNA_bind PF01726.16 gi|145592557|ref|YP_001154559.1| - 0.017 14.8 0.1 0.022 14.6 0.1 1.2 1 0 0 1 1 1 0 LexA DNA binding domain PheRS_DBD1 PF18552.1 gi|145592557|ref|YP_001154559.1| - 0.02 14.6 0.1 0.032 14.0 0.1 1.5 1 1 0 1 1 1 0 PheRS DNA binding domain 1 UPF0175 PF03683.13 gi|145592557|ref|YP_001154559.1| - 0.024 14.3 0.1 0.029 14.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) GerE PF00196.19 gi|145592557|ref|YP_001154559.1| - 0.037 13.6 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FaeA PF04703.12 gi|145592557|ref|YP_001154559.1| - 0.038 14.4 0.0 0.045 14.1 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein DUF3489 PF11994.8 gi|145592557|ref|YP_001154559.1| - 0.039 14.0 0.0 0.053 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) HTH_42 PF06224.12 gi|145592557|ref|YP_001154559.1| - 0.042 13.4 0.0 0.047 13.2 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|145592557|ref|YP_001154559.1| - 0.047 13.5 0.1 0.067 13.0 0.1 1.2 1 0 0 1 1 1 0 HTH DNA binding domain Sigma70_r1_1 PF03979.14 gi|145592557|ref|YP_001154559.1| - 0.049 13.7 0.0 0.07 13.2 0.0 1.4 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 HTH_19 PF12844.7 gi|145592557|ref|YP_001154559.1| - 0.053 13.5 0.3 0.074 13.1 0.3 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|145592557|ref|YP_001154559.1| - 0.077 13.3 0.9 0.16 12.4 0.9 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 gi|145592557|ref|YP_001154559.1| - 0.11 12.4 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_Mga PF08280.11 gi|145592557|ref|YP_001154559.1| - 0.14 12.2 0.0 0.16 12.0 0.0 1.1 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain F-112 PF09645.10 gi|145592557|ref|YP_001154559.1| - 0.14 12.2 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 F-112 protein ATPase PF06745.13 gi|145592559|ref|YP_001154561.1| - 8.7e-67 224.8 0.6 1.1e-66 224.5 0.6 1.0 1 0 0 1 1 1 1 KaiC RecA PF00154.21 gi|145592559|ref|YP_001154561.1| - 0.00055 19.5 0.1 0.0013 18.3 0.0 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|145592559|ref|YP_001154561.1| - 0.0018 17.6 0.1 0.0029 16.9 0.1 1.2 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|145592559|ref|YP_001154561.1| - 0.006 16.2 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|145592559|ref|YP_001154561.1| - 0.013 15.3 0.1 0.024 14.5 0.0 1.4 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|145592559|ref|YP_001154561.1| - 0.019 13.6 0.1 0.037 12.7 0.1 1.4 1 1 0 1 1 1 0 GvpD gas vesicle protein PAXNEB PF05625.11 gi|145592559|ref|YP_001154561.1| - 0.066 12.3 0.2 0.092 11.9 0.2 1.2 1 0 0 1 1 1 0 PAXNEB protein DnaB_C PF03796.15 gi|145592559|ref|YP_001154561.1| - 0.12 11.7 0.0 0.17 11.2 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain DUF3107 PF11305.8 gi|145592560|ref|YP_001154562.1| - 0.058 13.7 0.6 1.6 9.1 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF3107) MoaE PF02391.17 gi|145592561|ref|YP_001154563.1| - 3.9e-26 91.5 0.4 5.3e-26 91.1 0.4 1.1 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|145592561|ref|YP_001154563.1| - 4.3e-18 65.7 0.0 9.4e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|145592561|ref|YP_001154563.1| - 0.0062 16.4 0.1 0.022 14.6 0.0 1.9 2 0 0 2 2 2 1 Mut7-C ubiquitin LAL_C2 PF18603.1 gi|145592561|ref|YP_001154563.1| - 0.05 13.8 0.4 0.33 11.1 0.4 2.1 1 1 0 1 1 1 0 L-amino acid ligase C-terminal domain 2 TGS PF02824.21 gi|145592561|ref|YP_001154563.1| - 0.18 11.9 0.6 0.81 9.8 0.1 2.3 3 0 0 3 3 3 0 TGS domain DAO PF01266.24 gi|145592562|ref|YP_001154564.1| - 5.1e-17 62.5 1.5 3.4e-08 33.5 0.4 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|145592562|ref|YP_001154564.1| - 1.9e-12 46.9 0.3 1.9e-09 37.1 0.0 2.4 2 0 0 2 2 2 2 Thi4 family FAD_binding_3 PF01494.19 gi|145592562|ref|YP_001154564.1| - 4.7e-10 39.2 0.9 1.5e-08 34.3 0.9 2.6 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|145592562|ref|YP_001154564.1| - 1.7e-09 37.7 0.2 7.9e-09 35.6 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|145592562|ref|YP_001154564.1| - 1.2e-08 34.1 2.0 2.4e-08 33.1 0.2 2.2 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|145592562|ref|YP_001154564.1| - 1.6e-08 34.1 4.6 5.5e-08 32.3 1.1 2.5 2 1 1 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|145592562|ref|YP_001154564.1| - 3.7e-08 33.1 0.4 6.4e-08 32.4 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|145592562|ref|YP_001154564.1| - 4e-08 32.9 0.8 2e-07 30.6 0.1 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|145592562|ref|YP_001154564.1| - 1.1e-07 31.0 1.3 8.8e-05 21.5 0.0 2.1 1 1 1 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|145592562|ref|YP_001154564.1| - 1.8e-06 27.3 0.5 5.1e-06 25.8 0.5 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|145592562|ref|YP_001154564.1| - 2e-06 27.3 1.7 6.6e-06 25.6 0.3 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|145592562|ref|YP_001154564.1| - 2e-05 23.9 0.3 3.3e-05 23.2 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox PF00070.27 gi|145592562|ref|YP_001154564.1| - 3.7e-05 24.2 0.7 0.0071 16.9 0.3 3.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|145592562|ref|YP_001154564.1| - 4.4e-05 23.0 0.2 0.00013 21.4 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|145592562|ref|YP_001154564.1| - 0.026 14.5 0.4 0.083 12.9 0.4 2.0 1 1 0 1 1 1 0 FAD-NAD(P)-binding GDI PF00996.18 gi|145592562|ref|YP_001154564.1| - 0.037 12.6 0.0 2 6.8 0.0 2.6 2 1 1 3 3 3 0 GDP dissociation inhibitor 3HCDH_N PF02737.18 gi|145592562|ref|YP_001154564.1| - 0.13 12.2 1.0 0.18 11.7 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|145592562|ref|YP_001154564.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|145592562|ref|YP_001154564.1| - 0.15 11.4 0.2 0.28 10.4 0.2 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|145592562|ref|YP_001154564.1| - 0.18 12.3 0.1 0.44 11.0 0.1 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Fer4_2 PF12797.7 gi|145592563|ref|YP_001154565.1| - 9.3e-09 34.9 13.3 1.9e-05 24.5 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|145592563|ref|YP_001154565.1| - 5.7e-08 32.8 4.2 7.5e-08 32.4 4.2 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_7 PF12838.7 gi|145592563|ref|YP_001154565.1| - 3.9e-07 30.6 10.2 0.00026 21.5 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|145592563|ref|YP_001154565.1| - 1.2e-05 24.9 3.3 1.2e-05 24.9 3.3 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|145592563|ref|YP_001154565.1| - 7.8e-05 22.8 16.3 0.00014 21.9 16.4 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|145592563|ref|YP_001154565.1| - 0.00011 22.3 8.6 0.00014 21.9 8.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|145592563|ref|YP_001154565.1| - 0.00037 20.6 18.5 0.0026 17.8 2.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|145592563|ref|YP_001154565.1| - 0.00056 20.3 9.1 0.0031 17.9 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|145592563|ref|YP_001154565.1| - 0.002 19.0 1.3 0.002 19.0 1.3 2.3 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|145592563|ref|YP_001154565.1| - 0.0023 18.3 1.2 0.0023 18.3 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NSP11 PF06471.12 gi|145592563|ref|YP_001154565.1| - 0.0028 16.2 1.4 0.003 16.1 1.4 1.0 1 0 0 1 1 1 1 NSP11 Fer4_6 PF12837.7 gi|145592563|ref|YP_001154565.1| - 0.014 15.5 17.8 0.018 15.1 3.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|145592563|ref|YP_001154565.1| - 0.014 15.1 5.6 0.014 15.1 5.6 2.0 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|145592563|ref|YP_001154565.1| - 0.034 14.3 15.3 0.082 13.1 15.4 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|145592563|ref|YP_001154565.1| - 0.55 10.8 17.2 4.5e+02 1.5 18.2 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF PF01012.21 gi|145592564|ref|YP_001154566.1| - 7.2e-39 133.5 0.1 9.3e-39 133.2 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|145592565|ref|YP_001154567.1| - 3.8e-43 147.5 0.2 6.1e-43 146.8 0.2 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|145592565|ref|YP_001154567.1| - 2.2e-32 110.9 0.5 2.2e-32 110.9 0.5 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain TPP_enzyme_M PF00205.22 gi|145592565|ref|YP_001154567.1| - 0.082 12.7 0.8 1.6 8.5 0.8 2.5 1 1 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_arsenaticum_DSM_13514_uid58409/NC_009376.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_arsenaticum_DSM_13514_uid58409/NC_009376.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_arsenaticum_DSM_13514_uid58409/NC_009376.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Pyrobaculum_arsenaticum_DSM_13514_uid58409/NC_009376.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:17:04 2019 # [ok]