#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Cdc6_C	PF09079.6	gi|146302786|ref|YP_001190102.1|	-	1.1e-23	82.7	0.5	3.2e-23	81.2	0.1	2.0	2	0	0	2	2	2	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|146302786|ref|YP_001190102.1|	-	5.4e-15	55.6	0.1	1.5e-14	54.2	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|146302786|ref|YP_001190102.1|	-	3.9e-11	43.2	0.1	4.4e-10	39.8	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|146302786|ref|YP_001190102.1|	-	6.7e-10	39.2	0.0	1.7e-09	37.9	0.0	1.7	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|146302786|ref|YP_001190102.1|	-	8.2e-09	34.7	0.1	1.2e-08	34.1	0.0	1.2	1	0	0	1	1	1	1	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|146302786|ref|YP_001190102.1|	-	2.9e-08	33.6	2.9	8.1e-08	32.2	2.0	1.7	1	1	0	1	1	1	1	Archaeal	ATPase
KAP_NTPase	PF07693.9	gi|146302786|ref|YP_001190102.1|	-	3e-05	23.1	0.4	0.025	13.5	0.0	2.4	1	1	1	2	2	2	2	KAP	family	P-loop	domain
Bac_DnaA	PF00308.13	gi|146302786|ref|YP_001190102.1|	-	0.0012	18.5	0.8	0.0067	16.1	0.6	2.0	1	1	0	1	1	1	1	Bacterial	dnaA	protein
NACHT	PF05729.7	gi|146302786|ref|YP_001190102.1|	-	0.0014	18.2	0.0	0.003	17.2	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_17	PF13207.1	gi|146302786|ref|YP_001190102.1|	-	0.0018	19.0	1.3	0.0055	17.5	0.9	2.1	1	1	0	1	1	1	1	AAA	domain
DUF815	PF05673.8	gi|146302786|ref|YP_001190102.1|	-	0.0022	16.9	0.0	0.0041	16.0	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Sigma54_activat	PF00158.21	gi|146302786|ref|YP_001190102.1|	-	0.0023	17.4	0.0	0.0061	16.0	0.0	1.8	2	1	0	2	2	1	1	Sigma-54	interaction	domain
AAA_5	PF07728.9	gi|146302786|ref|YP_001190102.1|	-	0.0024	17.6	0.0	0.005	16.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
DUF2075	PF09848.4	gi|146302786|ref|YP_001190102.1|	-	0.007	15.3	0.0	0.011	14.7	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
Pox_A32	PF04665.7	gi|146302786|ref|YP_001190102.1|	-	0.008	15.5	0.0	0.013	14.8	0.0	1.4	1	0	0	1	1	1	1	Poxvirus	A32	protein
PIF1	PF05970.9	gi|146302786|ref|YP_001190102.1|	-	0.011	14.7	0.4	0.046	12.6	0.3	2.0	1	1	0	1	1	1	0	PIF1-like	helicase
DEAD	PF00270.24	gi|146302786|ref|YP_001190102.1|	-	0.013	14.9	1.4	1.7	8.1	0.1	2.4	1	1	0	2	2	2	0	DEAD/DEAH	box	helicase
AAA_14	PF13173.1	gi|146302786|ref|YP_001190102.1|	-	0.021	14.7	0.1	0.046	13.6	0.1	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|146302786|ref|YP_001190102.1|	-	0.032	14.5	0.1	0.1	12.9	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|146302786|ref|YP_001190102.1|	-	0.035	14.2	0.0	0.081	13.1	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
AAA_32	PF13654.1	gi|146302786|ref|YP_001190102.1|	-	0.036	12.7	0.0	0.036	12.7	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Flu_B_M2	PF04772.7	gi|146302786|ref|YP_001190102.1|	-	0.038	14.0	0.0	0.13	12.3	0.0	1.9	2	0	0	2	2	1	0	Influenza	B	matrix	protein	2	(BM2)
RecA	PF00154.16	gi|146302786|ref|YP_001190102.1|	-	0.04	12.9	0.0	0.072	12.1	0.0	1.3	1	0	0	1	1	1	0	recA	bacterial	DNA	recombination	protein
Torsin	PF06309.6	gi|146302786|ref|YP_001190102.1|	-	0.07	13.0	0.0	0.16	11.9	0.0	1.5	1	0	0	1	1	1	0	Torsin
DUF3060	PF11259.3	gi|146302786|ref|YP_001190102.1|	-	0.072	12.7	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3060)
Kinesin	PF00225.18	gi|146302786|ref|YP_001190102.1|	-	0.072	11.7	0.0	0.11	11.2	0.0	1.3	1	0	0	1	1	1	0	Kinesin	motor	domain
E2F_TDP	PF02319.15	gi|146302786|ref|YP_001190102.1|	-	0.072	12.6	3.5	1.4	8.5	0.1	3.2	3	0	0	3	3	3	0	E2F/DP	family	winged-helix	DNA-binding	domain
IstB_IS21	PF01695.12	gi|146302786|ref|YP_001190102.1|	-	0.085	12.2	0.0	7.7	5.8	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
OmpA	PF00691.15	gi|146302786|ref|YP_001190102.1|	-	0.096	13.1	0.0	2.9	8.3	0.0	2.6	2	0	0	2	2	2	0	OmpA	family
Sigma54_activ_2	PF14532.1	gi|146302786|ref|YP_001190102.1|	-	0.098	12.7	0.0	0.21	11.6	0.0	1.6	1	1	0	1	1	1	0	Sigma-54	interaction	domain
DUF99	PF01949.11	gi|146302787|ref|YP_001190103.1|	-	2.3e-25	88.7	0.0	3.1e-25	88.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF99
4HBT	PF03061.17	gi|146302788|ref|YP_001190104.1|	-	3.5e-22	78.3	0.0	1.8e-11	44.0	0.0	2.3	2	0	0	2	2	2	2	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|146302788|ref|YP_001190104.1|	-	0.013	15.9	0.0	2.2	8.7	0.0	2.1	1	1	0	2	2	2	0	Thioesterase-like	superfamily
CTP_transf_2	PF01467.21	gi|146302789|ref|YP_001190105.1|	-	1.3e-11	44.7	0.0	1.8e-11	44.3	0.0	1.2	1	0	0	1	1	1	1	Cytidylyltransferase
SAM_adeno_trans	PF01887.11	gi|146302790|ref|YP_001190106.1|	-	3.1e-74	249.2	0.0	3.5e-74	249.1	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-l-methionine	hydroxide	adenosyltransferase
CYTH	PF01928.16	gi|146302791|ref|YP_001190107.1|	-	2.3e-33	115.4	1.8	2.8e-33	115.1	1.3	1.0	1	0	0	1	1	1	1	CYTH	domain
SUI1	PF01253.17	gi|146302791|ref|YP_001190107.1|	-	0.0025	17.6	0.2	0.22	11.3	0.0	3.0	3	0	0	3	3	3	1	Translation	initiation	factor	SUI1
YcfA	PF07927.7	gi|146302791|ref|YP_001190107.1|	-	0.018	14.9	0.1	0.043	13.7	0.0	1.7	2	0	0	2	2	2	0	YcfA-like	protein
DUF3567	PF12091.3	gi|146302791|ref|YP_001190107.1|	-	0.026	14.4	0.0	0.06	13.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3567)
Nol1_Nop2_Fmu	PF01189.12	gi|146302792|ref|YP_001190108.1|	-	3.7e-51	174.1	0.0	4.8e-51	173.8	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|146302792|ref|YP_001190108.1|	-	2.7e-07	30.2	0.0	4.1e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146302792|ref|YP_001190108.1|	-	0.00012	21.2	0.0	0.0022	17.1	0.0	2.2	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
Methyltransf_26	PF13659.1	gi|146302792|ref|YP_001190108.1|	-	0.00015	21.7	0.0	0.00023	21.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|146302792|ref|YP_001190108.1|	-	0.00046	19.7	0.0	0.00074	19.1	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|146302792|ref|YP_001190108.1|	-	0.0023	18.4	0.0	0.0035	17.9	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|146302792|ref|YP_001190108.1|	-	0.0085	15.7	0.0	0.014	14.9	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_15	PF09445.5	gi|146302792|ref|YP_001190108.1|	-	0.009	15.5	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
FtsJ	PF01728.14	gi|146302792|ref|YP_001190108.1|	-	0.015	15.2	0.0	0.024	14.6	0.0	1.3	1	0	0	1	1	1	0	FtsJ-like	methyltransferase
RrnaAD	PF00398.15	gi|146302792|ref|YP_001190108.1|	-	0.18	10.7	0.0	0.33	9.9	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Rad51	PF08423.6	gi|146302794|ref|YP_001190110.1|	-	8.9e-92	306.6	0.4	1.1e-91	306.3	0.3	1.1	1	0	0	1	1	1	1	Rad51
RecA	PF00154.16	gi|146302794|ref|YP_001190110.1|	-	1.4e-14	53.8	0.5	2e-14	53.3	0.4	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
AAA_25	PF13481.1	gi|146302794|ref|YP_001190110.1|	-	2.2e-14	53.3	0.1	3.4e-14	52.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
HHH_5	PF14520.1	gi|146302794|ref|YP_001190110.1|	-	2.8e-10	40.1	0.2	8.5e-10	38.6	0.1	1.8	1	0	0	1	1	1	1	Helix-hairpin-helix	domain
KaiC	PF06745.8	gi|146302794|ref|YP_001190110.1|	-	7.3e-10	38.3	0.2	1.2e-09	37.6	0.1	1.4	1	0	0	1	1	1	1	KaiC
AAA_22	PF13401.1	gi|146302794|ref|YP_001190110.1|	-	0.0006	19.9	0.1	0.0012	19.0	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
Cdd1	PF11731.3	gi|146302794|ref|YP_001190110.1|	-	0.0037	17.1	0.0	0.0084	16.0	0.0	1.6	1	0	0	1	1	1	1	Pathogenicity	locus
AAA_24	PF13479.1	gi|146302794|ref|YP_001190110.1|	-	0.049	13.2	0.1	0.18	11.3	0.1	2.1	1	1	0	1	1	1	0	AAA	domain
HIT	PF01230.18	gi|146302795|ref|YP_001190111.1|	-	7.1e-14	52.1	0.0	9.4e-14	51.7	0.0	1.2	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|146302795|ref|YP_001190111.1|	-	5.7e-10	39.4	0.0	7.7e-10	39.0	0.0	1.1	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
CwfJ_C_1	PF04677.10	gi|146302795|ref|YP_001190111.1|	-	4.7e-09	35.9	0.0	8.6e-09	35.0	0.0	1.4	1	1	0	1	1	1	1	Protein	similar	to	CwfJ	C-terminus	1
PALP	PF00291.20	gi|146302796|ref|YP_001190112.1|	-	1.5e-76	257.5	0.1	1.9e-76	257.2	0.1	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
ACT	PF01842.20	gi|146302796|ref|YP_001190112.1|	-	0.0012	18.2	0.0	0.0032	16.8	0.0	1.7	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|146302796|ref|YP_001190112.1|	-	0.0042	17.3	0.3	0.063	13.6	0.1	2.3	2	0	0	2	2	2	1	ACT	domain
HTH_22	PF13309.1	gi|146302796|ref|YP_001190112.1|	-	0.022	14.4	0.0	0.093	12.4	0.0	2.1	2	0	0	2	2	2	0	HTH	domain
ACT_6	PF13740.1	gi|146302796|ref|YP_001190112.1|	-	0.038	13.7	0.0	0.092	12.4	0.0	1.6	1	0	0	1	1	1	0	ACT	domain
EFG_C	PF00679.19	gi|146302796|ref|YP_001190112.1|	-	0.066	13.0	0.0	1.6	8.6	0.0	2.5	2	0	0	2	2	2	0	Elongation	factor	G	C-terminus
Thr_dehydrat_C	PF00585.13	gi|146302796|ref|YP_001190112.1|	-	0.11	12.1	0.0	0.3	10.6	0.0	1.8	2	0	0	2	2	2	0	C-terminal	regulatory	domain	of	Threonine	dehydratase
PDT	PF00800.13	gi|146302797|ref|YP_001190113.1|	-	4.5e-26	91.5	0.1	6e-26	91.0	0.1	1.2	1	0	0	1	1	1	1	Prephenate	dehydratase
ACT	PF01842.20	gi|146302797|ref|YP_001190113.1|	-	4.6e-08	32.3	0.0	1.2e-07	31.0	0.0	1.8	1	1	0	1	1	1	1	ACT	domain
DAO	PF01266.19	gi|146302799|ref|YP_001190115.1|	-	8.4e-13	47.9	0.0	2.2e-11	43.2	0.0	2.3	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|146302799|ref|YP_001190115.1|	-	1.6e-11	44.4	1.3	8.5e-05	22.5	0.0	3.3	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146302799|ref|YP_001190115.1|	-	1.2e-10	40.4	0.1	1.2e-05	23.9	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
GIDA	PF01134.17	gi|146302799|ref|YP_001190115.1|	-	5.1e-08	32.1	0.6	0.003	16.4	0.1	2.4	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|146302799|ref|YP_001190115.1|	-	3.3e-07	29.5	0.8	0.00034	19.5	0.0	3.0	3	0	0	3	3	3	2	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|146302799|ref|YP_001190115.1|	-	1.7e-05	24.7	0.1	0.00013	21.8	0.0	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|146302799|ref|YP_001190115.1|	-	0.00018	20.6	0.2	0.00089	18.4	0.0	2.1	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|146302799|ref|YP_001190115.1|	-	0.00055	20.0	0.2	0.22	11.5	0.1	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|146302799|ref|YP_001190115.1|	-	0.0019	17.2	0.1	0.02	13.8	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|146302799|ref|YP_001190115.1|	-	0.0076	14.9	0.1	0.042	12.4	0.0	2.2	3	0	0	3	3	3	1	Tryptophan	halogenase
NAD_binding_9	PF13454.1	gi|146302799|ref|YP_001190115.1|	-	0.0089	15.8	0.0	0.099	12.4	0.0	2.2	2	0	0	2	2	2	1	FAD-NAD(P)-binding
FAD_binding_3	PF01494.14	gi|146302799|ref|YP_001190115.1|	-	0.013	14.5	0.0	0.024	13.7	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146302799|ref|YP_001190115.1|	-	0.06	12.4	0.1	0.099	11.7	0.0	1.3	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|146302799|ref|YP_001190115.1|	-	0.15	12.4	1.3	28	5.1	0.1	2.8	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Adenylsucc_synt	PF00709.16	gi|146302800|ref|YP_001190116.1|	-	1.8e-73	247.6	0.9	1.3e-36	126.2	0.0	3.0	1	1	2	3	3	3	3	Adenylosuccinate	synthetase
DUF1297	PF06973.7	gi|146302801|ref|YP_001190117.1|	-	4.9e-78	260.7	0.0	6.3e-78	260.4	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|146302801|ref|YP_001190117.1|	-	1e-46	157.7	0.0	1.6e-46	157.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_4	PF13535.1	gi|146302801|ref|YP_001190117.1|	-	1.9e-07	31.0	0.0	1e-05	25.3	0.0	2.2	1	1	0	1	1	1	1	ATP-grasp	domain
DUF1297	PF06973.7	gi|146302802|ref|YP_001190118.1|	-	2.4e-74	248.7	0.0	3.2e-74	248.3	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1297)
DUF1246	PF06849.7	gi|146302802|ref|YP_001190118.1|	-	8.9e-40	135.3	0.0	1.6e-39	134.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1246)
ATP-grasp_3	PF02655.9	gi|146302802|ref|YP_001190118.1|	-	0.0019	18.0	0.0	0.0032	17.3	0.0	1.4	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146302802|ref|YP_001190118.1|	-	0.092	12.4	0.0	0.26	11.0	0.0	1.7	1	1	0	1	1	1	0	ATP-grasp	domain
Lyase_1	PF00206.15	gi|146302803|ref|YP_001190119.1|	-	5.9e-43	147.2	0.0	8.7e-43	146.6	0.0	1.2	1	0	0	1	1	1	1	Lyase
ADSL_C	PF10397.4	gi|146302803|ref|YP_001190119.1|	-	1.5e-20	72.9	0.1	3.7e-20	71.7	0.0	1.7	1	0	0	1	1	1	1	Adenylosuccinate	lyase	C-terminus
FumaraseC_C	PF10415.4	gi|146302803|ref|YP_001190119.1|	-	0.00047	20.1	0.2	0.019	15.0	0.0	2.8	2	0	0	2	2	2	1	Fumarase	C	C-terminus
ASL_C2	PF14698.1	gi|146302803|ref|YP_001190119.1|	-	0.0094	16.0	0.0	0.082	12.9	0.0	2.4	2	0	0	2	2	2	1	Argininosuccinate	lyase	C-terminal
AIRS	PF00586.19	gi|146302804|ref|YP_001190120.1|	-	2.6e-13	50.0	0.0	4.7e-13	49.1	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AIRS_C	PF02769.17	gi|146302804|ref|YP_001190120.1|	-	1.6e-10	41.1	0.0	2.1e-10	40.7	0.0	1.2	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
SSB	PF00436.20	gi|146302804|ref|YP_001190120.1|	-	0.011	15.5	0.0	0.022	14.6	0.0	1.4	1	0	0	1	1	1	0	Single-strand	binding	protein	family
Radical_SAM	PF04055.16	gi|146302805|ref|YP_001190121.1|	-	3.7e-17	63.0	0.0	3.7e-17	63.0	0.0	2.0	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146302805|ref|YP_001190121.1|	-	3.8e-08	33.3	0.0	9.9e-08	32.0	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|146302805|ref|YP_001190121.1|	-	8.5e-07	29.1	0.0	2e-06	28.0	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Peptidase_S13	PF02113.10	gi|146302805|ref|YP_001190121.1|	-	0.089	11.2	0.0	0.23	9.9	0.0	1.5	2	0	0	2	2	2	0	D-Ala-D-Ala	carboxypeptidase	3	(S13)	family
RibD_C	PF01872.12	gi|146302806|ref|YP_001190122.1|	-	6e-44	150.0	0.0	6.7e-44	149.9	0.0	1.0	1	0	0	1	1	1	1	RibD	C-terminal	domain
DUF3389	PF11869.3	gi|146302806|ref|YP_001190122.1|	-	0.13	12.1	0.0	20	5.1	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3389)
Lactamase_B	PF00753.22	gi|146302807|ref|YP_001190123.1|	-	7.7e-05	22.4	0.0	0.0006	19.5	0.0	1.9	2	0	0	2	2	2	1	Metallo-beta-lactamase	superfamily
Pribosyltran	PF00156.22	gi|146302808|ref|YP_001190124.1|	-	6.4e-22	77.5	1.2	1.1e-21	76.7	0.8	1.4	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
HTH_31	PF13560.1	gi|146302808|ref|YP_001190124.1|	-	0.00062	19.9	0.1	0.0011	19.0	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|146302808|ref|YP_001190124.1|	-	0.0023	17.7	0.1	0.0044	16.8	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_23	PF13384.1	gi|146302808|ref|YP_001190124.1|	-	0.025	14.2	0.0	0.05	13.2	0.0	1.5	1	0	0	1	1	1	0	Homeodomain-like	domain
UPRTase	PF14681.1	gi|146302808|ref|YP_001190124.1|	-	0.077	12.1	0.1	0.13	11.4	0.0	1.3	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
PT-TG	PF14449.1	gi|146302808|ref|YP_001190124.1|	-	0.1	12.3	0.1	14	5.5	0.0	2.4	2	0	0	2	2	2	0	Pre-toxin	TG
GatB_N	PF02934.10	gi|146302809|ref|YP_001190125.1|	-	1.2e-102	342.7	0.0	1.6e-102	342.2	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|146302809|ref|YP_001190125.1|	-	1.2e-40	138.6	2.8	1.2e-40	138.6	2.0	1.6	2	0	0	2	2	2	1	GatB	domain
OmdA	PF13376.1	gi|146302809|ref|YP_001190125.1|	-	0.0041	16.7	0.1	0.016	14.8	0.0	2.1	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
dCMP_cyt_deam_1	PF00383.17	gi|146302810|ref|YP_001190126.1|	-	2e-17	62.6	0.0	2.4e-17	62.4	0.0	1.1	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
dCMP_cyt_deam_2	PF08211.6	gi|146302810|ref|YP_001190126.1|	-	1.9e-10	40.8	0.1	2.9e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	Cytidine	and	deoxycytidylate	deaminase	zinc-binding	region
LmjF365940-deam	PF14421.1	gi|146302810|ref|YP_001190126.1|	-	0.00017	21.0	0.2	0.22	10.8	0.0	2.1	1	1	1	2	2	2	2	A	distinct	subfamily	of	CDD/CDA-like	deaminases
HATPase_c	PF02518.21	gi|146302810|ref|YP_001190126.1|	-	0.086	12.5	0.2	0.77	9.4	0.1	2.4	1	1	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
UPRTase	PF14681.1	gi|146302811|ref|YP_001190127.1|	-	4.4e-54	182.8	0.2	5.1e-54	182.6	0.1	1.0	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
Pribosyltran	PF00156.22	gi|146302811|ref|YP_001190127.1|	-	1.6e-08	34.2	0.6	9.2e-08	31.8	0.1	2.0	1	1	1	2	2	2	1	Phosphoribosyl	transferase	domain
Ribosomal_S28e	PF01200.13	gi|146302812|ref|YP_001190128.1|	-	3.9e-30	103.4	2.6	4.3e-30	103.2	1.8	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S28e
KOW	PF00467.24	gi|146302812|ref|YP_001190128.1|	-	0.06	13.1	1.0	0.56	10.0	0.1	2.6	2	1	1	3	3	3	0	KOW	motif
Ribosomal_L24e	PF01246.15	gi|146302813|ref|YP_001190129.1|	-	4.2e-18	64.9	1.0	4.4e-18	64.8	0.7	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L24e
zf-FCS	PF06467.9	gi|146302813|ref|YP_001190129.1|	-	4.1e-05	23.1	0.9	6.1e-05	22.5	0.6	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-MYND	PF01753.13	gi|146302813|ref|YP_001190129.1|	-	0.0021	17.8	0.0	0.0036	17.1	0.0	1.4	1	1	0	1	1	1	1	MYND	finger
DUF2116	PF09889.4	gi|146302813|ref|YP_001190129.1|	-	0.047	13.4	3.6	0.4	10.5	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	containing	a	Zn-ribbon	(DUF2116)
YHS	PF04945.8	gi|146302813|ref|YP_001190129.1|	-	0.074	12.9	0.2	0.13	12.1	0.2	1.4	1	0	0	1	1	1	0	YHS	domain
Arc_trans_TRASH	PF08394.5	gi|146302813|ref|YP_001190129.1|	-	0.091	12.9	0.6	0.14	12.2	0.4	1.4	1	0	0	1	1	1	0	Archaeal	TRASH	domain
Ta0938	PF11494.3	gi|146302813|ref|YP_001190129.1|	-	0.097	12.7	0.1	0.1	12.7	0.1	1.1	1	0	0	1	1	1	0	Ta0938
DUF581	PF04570.9	gi|146302813|ref|YP_001190129.1|	-	0.11	11.7	1.6	0.31	10.3	1.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF581)
DUF329	PF03884.9	gi|146302813|ref|YP_001190129.1|	-	0.5	9.9	2.6	1.9	8.1	1.8	2.0	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF329)
NDK	PF00334.14	gi|146302814|ref|YP_001190130.1|	-	1.7e-56	189.7	0.1	1.9e-56	189.6	0.0	1.0	1	0	0	1	1	1	1	Nucleoside	diphosphate	kinase
DUF4425	PF14466.1	gi|146302814|ref|YP_001190130.1|	-	0.0031	17.6	0.0	0.0045	17.1	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4425)
GTP_EFTU	PF00009.22	gi|146302815|ref|YP_001190131.1|	-	4.1e-32	111.1	0.0	1.4e-31	109.4	0.0	1.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D4	PF14578.1	gi|146302815|ref|YP_001190131.1|	-	5.3e-24	83.6	1.6	2.1e-23	81.7	1.1	2.1	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
IF-2	PF11987.3	gi|146302815|ref|YP_001190131.1|	-	1.8e-17	63.1	0.6	4.7e-17	61.8	0.4	1.7	1	0	0	1	1	1	1	Translation-initiation	factor	2
GTP_EFTU_D2	PF03144.20	gi|146302815|ref|YP_001190131.1|	-	2.7e-10	40.2	3.5	1.4e-09	37.8	0.1	3.0	3	0	0	3	3	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|146302815|ref|YP_001190131.1|	-	1.2e-06	28.4	0.1	3e-06	27.1	0.0	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|146302815|ref|YP_001190131.1|	-	6.1e-06	26.7	0.0	1.5e-05	25.4	0.0	1.7	1	0	0	1	1	1	1	Miro-like	protein
Dynamin_N	PF00350.18	gi|146302815|ref|YP_001190131.1|	-	0.0025	17.6	0.1	0.056	13.2	0.0	2.6	2	0	0	2	2	2	1	Dynamin	family
Ras	PF00071.17	gi|146302815|ref|YP_001190131.1|	-	0.0028	17.0	0.0	0.012	15.0	0.0	2.0	1	1	0	1	1	1	1	Ras	family
PduV-EutP	PF10662.4	gi|146302815|ref|YP_001190131.1|	-	0.017	14.5	0.5	1	8.8	0.0	3.7	4	1	1	5	5	5	0	Ethanolamine	utilisation	-	propanediol	utilisation
Arf	PF00025.16	gi|146302815|ref|YP_001190131.1|	-	0.026	13.7	0.2	5.1	6.2	0.0	2.9	2	1	0	2	2	2	0	ADP-ribosylation	factor	family
MobB	PF03205.9	gi|146302815|ref|YP_001190131.1|	-	0.038	13.6	0.2	0.52	10.0	0.1	2.6	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRPRB	PF09439.5	gi|146302815|ref|YP_001190131.1|	-	0.055	12.6	0.2	0.55	9.4	0.2	2.5	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
Malic_M	PF03949.10	gi|146302816|ref|YP_001190132.1|	-	1.4e-67	227.9	0.3	1.7e-67	227.6	0.2	1.1	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|146302816|ref|YP_001190132.1|	-	1.9e-27	95.9	0.1	1.8e-24	86.3	0.1	2.7	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
Cupin_1	PF00190.17	gi|146302816|ref|YP_001190132.1|	-	0.023	14.1	0.0	0.064	12.6	0.0	1.7	1	1	0	1	1	1	0	Cupin
AdoHcyase_NAD	PF00670.16	gi|146302816|ref|YP_001190132.1|	-	0.056	13.2	0.0	0.16	11.8	0.0	1.7	2	0	0	2	2	2	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
RNA_pol_Rpb5_C	PF01191.14	gi|146302817|ref|YP_001190133.1|	-	1.4e-29	101.4	0.0	1.6e-29	101.2	0.0	1.0	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
PYC_OADA	PF02436.13	gi|146302817|ref|YP_001190133.1|	-	0.056	12.8	0.0	0.069	12.5	0.0	1.2	1	0	0	1	1	1	0	Conserved	carboxylase	domain
RNA_pol_Rpb2_6	PF00562.23	gi|146302818|ref|YP_001190134.1|	-	1.2e-127	425.8	0.0	2e-127	425.1	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	6
RNA_pol_Rpb2_1	PF04563.10	gi|146302818|ref|YP_001190134.1|	-	7e-62	207.9	0.0	1.2e-61	207.2	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	beta	subunit
RNA_pol_Rpb2_2	PF04561.9	gi|146302818|ref|YP_001190134.1|	-	1.1e-38	132.6	0.0	1.9e-38	131.8	0.0	1.4	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	2
RNA_pol_Rpb2_7	PF04560.15	gi|146302818|ref|YP_001190134.1|	-	5e-28	97.1	0.0	1.1e-27	96.0	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	7
RNA_pol_Rpb2_3	PF04565.11	gi|146302818|ref|YP_001190134.1|	-	1.5e-25	88.7	0.0	3.8e-25	87.4	0.0	1.8	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	3
RNA_pol_Rpb2_4	PF04566.8	gi|146302818|ref|YP_001190134.1|	-	1e-17	63.6	0.5	2.5e-17	62.4	0.3	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	4
RNA_pol_Rpb2_5	PF04567.12	gi|146302818|ref|YP_001190134.1|	-	1.4e-13	50.5	0.6	3.5e-13	49.3	0.4	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb2,	domain	5
DUF1610	PF07754.6	gi|146302818|ref|YP_001190134.1|	-	0.36	10.9	1.1	0.84	9.8	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
RNA_pol_Rpb1_1	PF04997.7	gi|146302819|ref|YP_001190135.1|	-	4.2e-88	295.8	0.2	6.8e-87	291.8	0.2	2.1	1	1	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	1
RNA_pol_Rpb1_2	PF00623.15	gi|146302819|ref|YP_001190135.1|	-	2.4e-69	232.5	0.1	8.3e-69	230.7	0.0	2.0	3	0	0	3	3	3	1	RNA	polymerase	Rpb1,	domain	2
RNA_pol_Rpb1_3	PF04983.13	gi|146302819|ref|YP_001190135.1|	-	5e-37	127.0	0.0	1.1e-36	125.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	3
RNA_pol_Rpb1_4	PF05000.12	gi|146302819|ref|YP_001190135.1|	-	1.2e-33	115.0	0.0	2.8e-33	113.8	0.0	1.7	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	4
RNA_pol_Rpb1_5	PF04998.12	gi|146302819|ref|YP_001190135.1|	-	1.4e-26	93.3	0.1	3e-26	92.3	0.1	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
zf-ribbon_3	PF13248.1	gi|146302819|ref|YP_001190135.1|	-	0.01	15.0	0.0	1.3	8.3	0.0	2.9	2	1	0	2	2	2	1	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|146302819|ref|YP_001190135.1|	-	0.074	12.7	7.5	0.82	9.3	0.2	3.4	3	0	0	3	3	3	0	Zinc	finger	found	in	FPG	and	IleRS
zf-Di19	PF05605.7	gi|146302819|ref|YP_001190135.1|	-	0.18	11.9	2.1	1.8	8.7	0.1	2.5	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
RNA_pol_Rpb1_5	PF04998.12	gi|146302820|ref|YP_001190136.1|	-	2.6e-52	177.7	1.3	3.4e-52	177.4	0.9	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb1,	domain	5
Ribosomal_L7Ae	PF01248.21	gi|146302821|ref|YP_001190137.1|	-	8.4e-16	57.2	0.0	1e-15	57.0	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
KH_2	PF07650.12	gi|146302822|ref|YP_001190138.1|	-	4.4e-19	67.8	4.8	9.7e-15	53.9	0.5	2.1	1	1	1	2	2	2	2	KH	domain
KH_5	PF13184.1	gi|146302822|ref|YP_001190138.1|	-	3.2e-15	55.6	0.5	3.2e-15	55.6	0.3	2.1	2	1	0	2	2	2	1	NusA-like	KH	domain
KH_4	PF13083.1	gi|146302822|ref|YP_001190138.1|	-	1.3e-13	50.4	0.9	3.3e-06	26.6	0.0	2.2	2	0	0	2	2	2	2	KH	domain
KH_1	PF00013.24	gi|146302822|ref|YP_001190138.1|	-	2.6e-06	27.0	3.7	8.9e-05	22.0	0.5	2.5	1	1	1	2	2	2	2	KH	domain
Ribosom_S12_S23	PF00164.20	gi|146302823|ref|YP_001190139.1|	-	9.2e-41	138.0	0.3	1e-40	137.9	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S12/S23
DNase-RNase	PF02577.9	gi|146302824|ref|YP_001190140.1|	-	1.6e-10	40.3	0.2	2.4e-10	39.7	0.1	1.3	1	0	0	1	1	1	1	Bifunctional	nuclease
Ribosomal_S7	PF00177.16	gi|146302825|ref|YP_001190141.1|	-	4.5e-45	152.8	0.2	5.2e-45	152.6	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S7p/S5e
GTP_EFTU	PF00009.22	gi|146302826|ref|YP_001190142.1|	-	1e-52	178.3	0.0	1.4e-52	177.8	0.0	1.2	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|146302826|ref|YP_001190142.1|	-	1.1e-30	105.6	0.1	4.4e-30	103.7	0.0	2.0	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|146302826|ref|YP_001190142.1|	-	4.8e-21	74.6	4.2	5.6e-20	71.2	1.3	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
GTP_EFTU_D4	PF14578.1	gi|146302826|ref|YP_001190142.1|	-	1e-07	31.4	1.4	3e-07	29.9	1.0	1.8	1	0	0	1	1	1	1	Elongation	factor	Tu	domain	4
MMR_HSR1	PF01926.18	gi|146302826|ref|YP_001190142.1|	-	1.1e-05	25.3	0.1	3.6e-05	23.7	0.0	1.9	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
Miro	PF08477.8	gi|146302826|ref|YP_001190142.1|	-	0.00098	19.6	0.1	0.012	16.1	0.0	2.6	1	1	0	1	1	1	1	Miro-like	protein
Septin	PF00735.13	gi|146302826|ref|YP_001190142.1|	-	0.0037	16.3	0.1	0.014	14.4	0.0	1.9	1	1	0	1	1	1	1	Septin
SRPRB	PF09439.5	gi|146302826|ref|YP_001190142.1|	-	0.0072	15.5	0.0	1.2	8.2	0.0	2.4	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Dynamin_N	PF00350.18	gi|146302826|ref|YP_001190142.1|	-	0.0085	15.9	0.0	2	8.2	0.0	2.7	1	1	1	2	2	2	1	Dynamin	family
Gtr1_RagA	PF04670.7	gi|146302826|ref|YP_001190142.1|	-	0.049	12.7	0.1	0.45	9.6	0.1	2.0	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
Ribosomal_S10	PF00338.17	gi|146302827|ref|YP_001190143.1|	-	1.3e-29	101.8	0.1	1.4e-29	101.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S10p/S20e
GATase_3	PF07685.9	gi|146302828|ref|YP_001190144.1|	-	4.8e-28	97.7	0.0	1.1e-27	96.6	0.0	1.5	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
CbiA	PF01656.18	gi|146302828|ref|YP_001190144.1|	-	3.7e-15	55.8	0.0	5.9e-15	55.2	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|146302828|ref|YP_001190144.1|	-	2e-14	53.7	0.2	9.1e-10	38.4	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
Peptidase_S51	PF03575.12	gi|146302828|ref|YP_001190144.1|	-	0.026	14.2	0.0	0.049	13.3	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	S51
Raptor_N	PF14538.1	gi|146302828|ref|YP_001190144.1|	-	0.074	12.9	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Raptor	N-terminal	CASPase	like	domain
DUF2208	PF09973.4	gi|146302829|ref|YP_001190145.1|	-	5.1e-83	277.8	19.0	5.8e-83	277.7	13.2	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2208)
Lsm_C	PF14894.1	gi|146302829|ref|YP_001190145.1|	-	0.057	12.9	0.6	0.12	11.8	0.0	1.8	2	0	0	2	2	2	0	Lsm	C-terminal
DUF4064	PF13273.1	gi|146302829|ref|YP_001190145.1|	-	4	7.6	8.1	2.6	8.1	3.1	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF4064)
DHBP_synthase	PF00926.14	gi|146302831|ref|YP_001190147.1|	-	1.9e-54	183.8	0.0	2.1e-54	183.6	0.0	1.0	1	0	0	1	1	1	1	3,4-dihydroxy-2-butanone	4-phosphate	synthase
DMRL_synthase	PF00885.14	gi|146302832|ref|YP_001190148.1|	-	1.7e-16	60.1	0.1	1.9e-16	60.0	0.1	1.1	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DMRL_synthase	PF00885.14	gi|146302833|ref|YP_001190149.1|	-	1.7e-40	137.9	0.1	2e-40	137.8	0.1	1.0	1	0	0	1	1	1	1	6,7-dimethyl-8-ribityllumazine	synthase
DUF885	PF05960.6	gi|146302833|ref|YP_001190149.1|	-	0.088	11.9	0.0	0.11	11.5	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
GGDN	PF05165.7	gi|146302834|ref|YP_001190150.1|	-	3.5e-37	127.7	0.1	7.9e-37	126.6	0.1	1.5	1	1	0	1	1	1	1	GGDN	family
LdpA_C	PF12617.3	gi|146302834|ref|YP_001190150.1|	-	0.054	12.7	0.0	0.081	12.1	0.0	1.3	1	0	0	1	1	1	0	Iron-Sulfur	binding	protein	C	terminal
Amidohydro_1	PF01979.15	gi|146302835|ref|YP_001190151.1|	-	1.1e-15	58.1	0.0	2.4e-11	43.8	0.0	2.2	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|146302835|ref|YP_001190151.1|	-	6.9e-08	32.8	0.0	0.0043	17.1	0.0	2.5	1	1	1	2	2	2	2	Amidohydrolase
A_deaminase	PF00962.17	gi|146302835|ref|YP_001190151.1|	-	5.1e-05	22.3	0.0	7.7e-05	21.7	0.0	1.2	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amidohydro_5	PF13594.1	gi|146302835|ref|YP_001190151.1|	-	0.00014	21.5	0.0	0.00036	20.2	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
PCNA_N	PF00705.13	gi|146302836|ref|YP_001190152.1|	-	2.9e-07	30.0	0.1	2.8e-06	26.8	0.0	2.0	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|146302836|ref|YP_001190152.1|	-	6.6e-05	22.8	0.2	0.32	10.9	0.0	3.2	1	1	0	3	3	3	2	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.8	gi|146302836|ref|YP_001190152.1|	-	0.0018	17.4	0.1	0.0032	16.6	0.0	1.6	1	1	0	1	1	1	1	Rad9
RsgI_N	PF12791.2	gi|146302836|ref|YP_001190152.1|	-	0.0095	15.5	0.1	0.034	13.7	0.1	2.1	1	1	0	1	1	1	1	Anti-sigma	factor	N-terminus
Rad1	PF02144.11	gi|146302836|ref|YP_001190152.1|	-	0.014	14.1	0.2	2.9	6.5	0.0	2.3	1	1	1	2	2	2	0	Repair	protein	Rad1/Rec1/Rad17
HATPase_c	PF02518.21	gi|146302836|ref|YP_001190152.1|	-	0.017	14.8	0.2	0.2	11.3	0.0	2.3	2	1	0	2	2	2	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
Spore_GerAC	PF05504.6	gi|146302836|ref|YP_001190152.1|	-	0.022	14.5	1.0	0.3	10.8	0.0	2.1	2	0	0	2	2	2	0	Spore	germination	B3/	GerAC	like,	C-terminal
RNA_pol_Rpo13	PF12136.3	gi|146302837|ref|YP_001190153.1|	-	1.1e-17	63.4	0.5	1.1e-17	63.4	0.3	1.9	2	0	0	2	2	2	1	RNA	polymerase	Rpo13	subunit	HTH	domain
Pro_dh-DNA_bdg	PF14850.1	gi|146302837|ref|YP_001190153.1|	-	0.0056	16.8	0.2	0.0075	16.4	0.2	1.1	1	0	0	1	1	1	1	DNA-binding	domain	of	Proline	dehydrogenase
DUF3991	PF13154.1	gi|146302837|ref|YP_001190153.1|	-	0.019	15.1	0.4	0.025	14.7	0.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3991)
Peptidase_S49_N	PF08496.5	gi|146302837|ref|YP_001190153.1|	-	1.2	8.8	7.3	1.5	8.5	5.1	1.1	1	0	0	1	1	1	0	Peptidase	family	S49	N-terminal
AAA_10	PF12846.2	gi|146302838|ref|YP_001190154.1|	-	7.7e-28	97.8	0.2	1.1e-27	97.2	0.2	1.2	1	0	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|146302838|ref|YP_001190154.1|	-	7.3e-10	39.0	0.2	2.4e-09	37.3	0.1	1.9	1	1	0	1	1	1	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|146302838|ref|YP_001190154.1|	-	1.3e-05	24.0	0.0	0.062	11.9	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_22	PF13401.1	gi|146302838|ref|YP_001190154.1|	-	0.00042	20.4	0.0	0.041	14.0	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
TraG-D_C	PF12696.2	gi|146302838|ref|YP_001190154.1|	-	0.00068	19.4	0.0	0.0014	18.5	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
FtsK_SpoIIIE	PF01580.13	gi|146302838|ref|YP_001190154.1|	-	0.00077	18.9	0.0	0.0015	18.0	0.0	1.4	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|146302838|ref|YP_001190154.1|	-	0.00089	19.5	0.0	0.002	18.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
DUF258	PF03193.11	gi|146302838|ref|YP_001190154.1|	-	0.0021	17.2	0.0	0.0048	16.1	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|146302838|ref|YP_001190154.1|	-	0.0024	18.6	0.0	0.0066	17.2	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Pox_A32	PF04665.7	gi|146302838|ref|YP_001190154.1|	-	0.0081	15.4	0.1	0.024	13.9	0.0	1.7	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA	PF00004.24	gi|146302838|ref|YP_001190154.1|	-	0.014	15.5	0.0	0.11	12.7	0.0	2.3	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_24	PF13479.1	gi|146302838|ref|YP_001190154.1|	-	0.021	14.4	0.1	0.034	13.7	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|146302838|ref|YP_001190154.1|	-	0.025	14.0	0.0	0.073	12.6	0.0	1.7	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|146302838|ref|YP_001190154.1|	-	0.042	14.1	0.0	0.12	12.6	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_5	PF07728.9	gi|146302838|ref|YP_001190154.1|	-	0.046	13.4	0.0	0.24	11.1	0.0	2.1	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.17	gi|146302838|ref|YP_001190154.1|	-	0.053	12.3	0.1	0.092	11.5	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.1	gi|146302838|ref|YP_001190154.1|	-	0.096	13.0	0.1	0.64	10.3	0.1	2.0	1	1	0	1	1	1	0	AAA	domain
DEAD	PF00270.24	gi|146302839|ref|YP_001190155.1|	-	1.2e-37	129.0	0.0	4.9e-35	120.5	0.0	2.4	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
DEAD_assoc	PF08494.6	gi|146302839|ref|YP_001190155.1|	-	6.3e-20	71.6	0.0	1.4e-19	70.5	0.0	1.6	1	0	0	1	1	1	1	DEAD/H	associated
Helicase_C	PF00271.26	gi|146302839|ref|YP_001190155.1|	-	8.5e-18	63.9	0.2	1.5e-15	56.8	0.1	2.7	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|146302839|ref|YP_001190155.1|	-	0.012	15.4	0.0	0.024	14.4	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|146302839|ref|YP_001190155.1|	-	0.045	12.5	0.0	0.21	10.3	0.0	2.0	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
AAA_11	PF13086.1	gi|146302839|ref|YP_001190155.1|	-	0.055	13.0	0.0	0.6	9.6	0.0	2.7	2	1	0	2	2	2	0	AAA	domain
T4SS-DNA_transf	PF02534.9	gi|146302839|ref|YP_001190155.1|	-	0.15	10.6	0.1	0.41	9.1	0.0	1.6	2	0	0	2	2	2	0	Type	IV	secretory	system	Conjugative	DNA	transfer
KOW	PF00467.24	gi|146302840|ref|YP_001190156.1|	-	0.00036	20.1	0.4	0.00036	20.1	0.3	1.8	2	0	0	2	2	2	1	KOW	motif
Ribosomal_L14e	PF01929.12	gi|146302840|ref|YP_001190156.1|	-	0.0038	17.5	0.1	0.0057	16.9	0.1	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L14
YbbR	PF07949.7	gi|146302840|ref|YP_001190156.1|	-	0.019	15.0	0.6	0.026	14.6	0.4	1.3	1	0	0	1	1	1	0	YbbR-like	protein
FAD_binding_4	PF01565.18	gi|146302840|ref|YP_001190156.1|	-	0.086	12.3	0.0	0.099	12.1	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
DKCLD	PF08068.7	gi|146302841|ref|YP_001190157.1|	-	2.3e-14	53.0	0.1	2.9e-14	52.7	0.1	1.2	1	0	0	1	1	1	1	DKCLD	(NUC011)	domain
PUA	PF01472.15	gi|146302842|ref|YP_001190158.1|	-	7.5e-14	51.2	0.1	1.4e-13	50.3	0.0	1.5	1	0	0	1	1	1	1	PUA	domain
TruB_N	PF01509.13	gi|146302842|ref|YP_001190158.1|	-	1.3e-07	31.8	0.1	3.7e-06	27.1	0.0	2.4	1	1	0	1	1	1	1	TruB	family	pseudouridylate	synthase	(N	terminal	domain)
MTS	PF05175.9	gi|146302843|ref|YP_001190159.1|	-	2e-37	128.1	0.0	2.3e-37	127.9	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|146302843|ref|YP_001190159.1|	-	2.2e-10	40.5	0.0	3e-10	40.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146302843|ref|YP_001190159.1|	-	1.8e-08	34.1	0.0	2.3e-08	33.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146302843|ref|YP_001190159.1|	-	8.5e-08	32.7	0.0	1.3e-07	32.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|146302843|ref|YP_001190159.1|	-	1.5e-07	30.8	0.0	1.9e-07	30.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
UPF0020	PF01170.13	gi|146302843|ref|YP_001190159.1|	-	0.00016	21.2	0.0	0.00028	20.5	0.0	1.4	1	1	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Met_10	PF02475.11	gi|146302843|ref|YP_001190159.1|	-	0.0003	20.4	0.0	0.00042	19.9	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
GidB	PF02527.10	gi|146302843|ref|YP_001190159.1|	-	0.0027	16.8	0.1	0.004	16.3	0.0	1.4	1	1	0	1	1	1	1	rRNA	small	subunit	methyltransferase	G
Methyltransf_12	PF08242.7	gi|146302843|ref|YP_001190159.1|	-	0.0033	17.8	0.0	0.0061	17.0	0.0	1.5	1	1	1	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146302843|ref|YP_001190159.1|	-	0.0067	16.7	0.0	0.011	16.0	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.6	gi|146302843|ref|YP_001190159.1|	-	0.011	14.6	0.0	0.016	14.1	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
Methyltransf_15	PF09445.5	gi|146302843|ref|YP_001190159.1|	-	0.02	14.4	0.0	0.023	14.2	0.0	1.3	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Cons_hypoth95	PF03602.10	gi|146302843|ref|YP_001190159.1|	-	0.036	13.4	0.0	0.045	13.1	0.0	1.1	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
Methyltransf_16	PF10294.4	gi|146302843|ref|YP_001190159.1|	-	0.047	13.1	0.0	0.078	12.4	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
PCMT	PF01135.14	gi|146302843|ref|YP_001190159.1|	-	0.08	12.4	0.0	0.6	9.5	0.0	1.9	1	1	1	2	2	2	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_11	PF08241.7	gi|146302843|ref|YP_001190159.1|	-	0.099	13.1	0.0	0.15	12.5	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	domain
DUF633	PF04816.7	gi|146302843|ref|YP_001190159.1|	-	0.12	11.7	0.0	0.16	11.2	0.0	1.1	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF633)
Methyltransf_4	PF02390.12	gi|146302843|ref|YP_001190159.1|	-	0.13	11.2	0.0	0.24	10.3	0.0	1.5	2	0	0	2	2	2	0	Putative	methyltransferase
Dam	PF05869.6	gi|146302843|ref|YP_001190159.1|	-	0.18	11.2	0.0	0.25	10.7	0.0	1.3	1	1	0	1	1	1	0	DNA	N-6-adenine-methyltransferase	(Dam)
Ribosomal_L21e	PF01157.13	gi|146302846|ref|YP_001190162.1|	-	3.3e-23	81.3	1.9	3.6e-23	81.2	1.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L21e
DUF104	PF01954.11	gi|146302846|ref|YP_001190162.1|	-	0.0017	18.3	0.5	0.0093	15.9	0.0	2.1	1	1	1	2	2	2	1	Protein	of	unknown	function	DUF104
RNA_pol_Rpb4	PF03874.11	gi|146302847|ref|YP_001190163.1|	-	6.2e-17	61.6	0.9	8e-17	61.3	0.6	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb4
DUF3714	PF12508.3	gi|146302847|ref|YP_001190163.1|	-	0.011	15.2	0.1	0.015	14.7	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3714)
UTRA	PF07702.8	gi|146302847|ref|YP_001190163.1|	-	0.013	15.1	0.0	0.018	14.6	0.0	1.2	1	0	0	1	1	1	0	UTRA	domain
HRDC	PF00570.18	gi|146302847|ref|YP_001190163.1|	-	0.013	15.1	0.0	0.022	14.4	0.0	1.5	1	0	0	1	1	1	0	HRDC	domain
CENP-Q	PF13094.1	gi|146302847|ref|YP_001190163.1|	-	0.059	13.4	0.4	0.067	13.2	0.3	1.1	1	0	0	1	1	1	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
GatB_Yqey	PF02637.13	gi|146302847|ref|YP_001190163.1|	-	0.062	13.0	1.0	0.58	9.8	0.2	2.3	1	1	1	2	2	2	0	GatB	domain
ParD	PF09386.5	gi|146302847|ref|YP_001190163.1|	-	0.086	12.9	0.4	5.7	7.1	0.0	2.7	1	1	2	3	3	3	0	Antitoxin	ParD
FumaraseC_C	PF10415.4	gi|146302847|ref|YP_001190163.1|	-	0.1	12.7	0.1	18	5.4	0.0	2.4	2	0	0	2	2	2	0	Fumarase	C	C-terminus
DUF655	PF04919.7	gi|146302848|ref|YP_001190164.1|	-	6.2e-58	195.4	4.4	7.3e-58	195.2	3.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF655)
HHH_6	PF14579.1	gi|146302848|ref|YP_001190164.1|	-	0.0029	17.6	0.1	0.0087	16.0	0.0	1.9	1	1	0	1	1	1	1	Helix-hairpin-helix	motif
RrnaAD	PF00398.15	gi|146302849|ref|YP_001190165.1|	-	1.3e-22	80.0	0.0	1.7e-22	79.7	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
MTS	PF05175.9	gi|146302850|ref|YP_001190166.1|	-	2.6e-13	49.6	0.0	6.5e-13	48.4	0.0	1.5	1	1	1	2	2	2	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|146302850|ref|YP_001190166.1|	-	2.9e-11	43.4	0.0	3.6e-11	43.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|146302850|ref|YP_001190166.1|	-	2.3e-10	40.0	0.2	3.2e-10	39.5	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Met_10	PF02475.11	gi|146302850|ref|YP_001190166.1|	-	2.8e-07	30.3	0.0	5.1e-07	29.4	0.0	1.3	1	1	0	1	1	1	1	Met-10+	like-protein
Methyltransf_18	PF12847.2	gi|146302850|ref|YP_001190166.1|	-	2.8e-05	24.6	0.0	4.2e-05	24.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146302850|ref|YP_001190166.1|	-	0.00011	21.9	0.0	0.0014	18.4	0.0	2.0	1	1	0	2	2	2	1	Methyltransferase	domain
PCMT	PF01135.14	gi|146302850|ref|YP_001190166.1|	-	0.00049	19.6	0.1	0.00069	19.2	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|146302850|ref|YP_001190166.1|	-	0.001	18.7	0.0	0.0012	18.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|146302850|ref|YP_001190166.1|	-	0.007	15.8	0.1	0.017	14.5	0.1	1.6	2	0	0	2	2	2	1	Putative	methyltransferase
Methyltransf_15	PF09445.5	gi|146302850|ref|YP_001190166.1|	-	0.0074	15.8	0.1	0.012	15.1	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_32	PF13679.1	gi|146302850|ref|YP_001190166.1|	-	0.011	15.4	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
UPF0020	PF01170.13	gi|146302850|ref|YP_001190166.1|	-	0.016	14.8	0.2	0.073	12.6	0.1	2.1	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
MethyltransfD12	PF02086.10	gi|146302850|ref|YP_001190166.1|	-	0.021	14.2	0.0	2	7.8	0.0	2.1	1	1	1	2	2	2	0	D12	class	N6	adenine-specific	DNA	methyltransferase
CMAS	PF02353.15	gi|146302850|ref|YP_001190166.1|	-	0.025	13.6	0.0	0.037	13.1	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
N6_Mtase	PF02384.11	gi|146302850|ref|YP_001190166.1|	-	0.05	12.6	0.0	0.084	11.9	0.0	1.4	1	1	0	1	1	1	0	N-6	DNA	Methylase
RrnaAD	PF00398.15	gi|146302850|ref|YP_001190166.1|	-	0.059	12.3	0.0	0.082	11.9	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
N6_N4_Mtase	PF01555.13	gi|146302850|ref|YP_001190166.1|	-	0.09	12.2	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	DNA	methylase
DUF3572	PF12096.3	gi|146302850|ref|YP_001190166.1|	-	0.15	11.8	0.0	3.1	7.7	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3572)
GidB	PF02527.10	gi|146302850|ref|YP_001190166.1|	-	0.16	11.0	0.2	0.29	10.2	0.1	1.3	1	0	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
SpoU_methylase	PF00588.14	gi|146302851|ref|YP_001190167.1|	-	9.9e-31	106.5	0.0	2.8e-30	105.0	0.0	1.6	2	0	0	2	2	2	1	SpoU	rRNA	Methylase	family
Methyltrn_RNA_4	PF09936.4	gi|146302851|ref|YP_001190167.1|	-	0.00046	19.7	0.0	0.076	12.5	0.0	2.7	2	1	0	2	2	2	1	SAM-dependent	RNA	methyltransferase
DUF1995	PF09353.5	gi|146302851|ref|YP_001190167.1|	-	0.085	12.4	0.0	0.13	11.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1995)
Ribosomal_S3Ae	PF01015.13	gi|146302852|ref|YP_001190168.1|	-	6.5e-71	237.6	0.7	7.4e-71	237.5	0.5	1.0	1	0	0	1	1	1	1	Ribosomal	S3Ae	family
Orbi_VP2	PF00898.12	gi|146302852|ref|YP_001190168.1|	-	0.0094	13.5	0.5	0.011	13.2	0.3	1.1	1	0	0	1	1	1	1	Orbivirus	outer	capsid	protein	VP2
CTI	PF06934.6	gi|146302852|ref|YP_001190168.1|	-	0.041	12.1	0.1	0.05	11.8	0.1	1.1	1	0	0	1	1	1	0	Fatty	acid	cis/trans	isomerase	(CTI)
NTP_transferase	PF00483.18	gi|146302853|ref|YP_001190169.1|	-	1.2e-25	90.2	0.0	1.6e-25	89.8	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|146302853|ref|YP_001190169.1|	-	7e-18	63.2	16.4	4.9e-07	28.9	0.1	4.6	2	1	3	5	5	5	5	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transf_3	PF12804.2	gi|146302853|ref|YP_001190169.1|	-	3.1e-10	40.3	0.0	4.8e-10	39.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|146302853|ref|YP_001190169.1|	-	2.8e-05	23.7	0.0	5.5e-05	22.7	0.0	1.5	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.1	gi|146302853|ref|YP_001190169.1|	-	0.00053	19.4	9.7	0.0032	16.9	0.0	3.4	3	0	0	3	3	3	2	Hexapeptide	repeat	of	succinyl-transferase
MMR_HSR1_C	PF08438.5	gi|146302854|ref|YP_001190170.1|	-	8.9e-37	125.6	0.0	1.5e-36	124.9	0.0	1.4	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
MMR_HSR1	PF01926.18	gi|146302854|ref|YP_001190170.1|	-	1.5e-17	63.6	0.0	3.1e-17	62.6	0.0	1.7	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
TGS	PF02824.16	gi|146302854|ref|YP_001190170.1|	-	4.6e-15	55.2	0.0	9.2e-15	54.2	0.0	1.5	1	0	0	1	1	1	1	TGS	domain
FeoB_N	PF02421.13	gi|146302854|ref|YP_001190170.1|	-	6.1e-07	28.8	0.1	8.9e-06	25.0	0.1	2.6	3	0	0	3	3	3	1	Ferrous	iron	transport	protein	B
YchF-GTPase_C	PF06071.8	gi|146302854|ref|YP_001190170.1|	-	0.0029	17.3	0.3	1.3	8.8	0.0	3.0	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF933)
Miro	PF08477.8	gi|146302854|ref|YP_001190170.1|	-	0.044	14.2	0.0	0.2	12.1	0.0	2.2	2	1	0	2	2	2	0	Miro-like	protein
AAA_29	PF13555.1	gi|146302854|ref|YP_001190170.1|	-	0.082	12.4	0.1	0.39	10.2	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
GTP_EFTU	PF00009.22	gi|146302854|ref|YP_001190170.1|	-	0.1	12.0	0.2	24	4.2	0.0	2.9	3	0	0	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
Ribosomal_L15e	PF00827.12	gi|146302855|ref|YP_001190171.1|	-	1.9e-72	242.8	6.8	2.4e-72	242.4	4.7	1.2	1	0	0	1	1	1	1	Ribosomal	L15
RNA_binding	PF01877.12	gi|146302856|ref|YP_001190172.1|	-	3.2e-32	111.0	0.1	4.4e-32	110.6	0.1	1.2	1	0	0	1	1	1	1	RNA	binding
RNase_P_p30	PF01876.11	gi|146302857|ref|YP_001190173.1|	-	8.7e-11	41.2	0.1	1.7e-10	40.3	0.0	1.4	1	1	0	1	1	1	1	RNase	P	subunit	p30
RNase_P_Rpp14	PF01900.14	gi|146302858|ref|YP_001190174.1|	-	6.4e-17	61.4	0.0	9.1e-17	60.9	0.0	1.2	1	0	0	1	1	1	1	Rpp14/Pop5	family
CoA_binding_3	PF13727.1	gi|146302858|ref|YP_001190174.1|	-	0.043	13.6	0.2	0.055	13.3	0.1	1.2	1	0	0	1	1	1	0	CoA-binding	domain
TCR_zetazeta	PF11628.3	gi|146302858|ref|YP_001190174.1|	-	0.65	9.5	3.0	1.1	8.7	2.1	1.3	1	0	0	1	1	1	0	T-cell	surface	glycoprotein	CD3	zeta	chain
Proteasome	PF00227.21	gi|146302859|ref|YP_001190175.1|	-	3.5e-58	196.0	0.0	4.9e-58	195.5	0.0	1.2	1	0	0	1	1	1	1	Proteasome	subunit
Proteasome_A_N	PF10584.4	gi|146302859|ref|YP_001190175.1|	-	3.3e-13	48.6	0.7	1.1e-12	47.0	0.3	2.0	2	0	0	2	2	2	1	Proteasome	subunit	A	N-terminal	signature
RecA	PF00154.16	gi|146302859|ref|YP_001190175.1|	-	0.079	11.9	0.0	0.24	10.4	0.0	1.7	2	0	0	2	2	2	0	recA	bacterial	DNA	recombination	protein
SBDS	PF01172.13	gi|146302860|ref|YP_001190176.1|	-	5.3e-28	96.6	0.5	8.7e-28	95.9	0.4	1.4	1	0	0	1	1	1	1	Shwachman-Bodian-Diamond	syndrome	(SBDS)	protein
SBDS_C	PF09377.5	gi|146302860|ref|YP_001190176.1|	-	3.8e-22	78.3	1.2	5.6e-22	77.7	0.8	1.3	1	0	0	1	1	1	1	SBDS	protein	C-terminal	domain
EFG_C	PF00679.19	gi|146302860|ref|YP_001190176.1|	-	0.0035	17.1	0.0	0.01	15.6	0.0	1.8	2	0	0	2	2	2	1	Elongation	factor	G	C-terminus
UPF0262	PF06793.7	gi|146302860|ref|YP_001190176.1|	-	0.008	15.9	0.1	0.014	15.1	0.1	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0262)
P53_tetramer	PF07710.6	gi|146302860|ref|YP_001190176.1|	-	0.047	12.7	0.0	0.098	11.7	0.0	1.6	1	0	0	1	1	1	0	P53	tetramerisation	motif
DUF1949	PF09186.6	gi|146302860|ref|YP_001190176.1|	-	0.28	10.8	1.2	2.5	7.7	0.0	2.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF1949)
S1	PF00575.18	gi|146302861|ref|YP_001190177.1|	-	3.6e-06	26.9	0.0	5.6e-05	23.1	0.0	2.4	2	0	0	2	2	2	1	S1	RNA	binding	domain
KH_1	PF00013.24	gi|146302861|ref|YP_001190177.1|	-	6.3e-05	22.5	0.2	0.00025	20.6	0.0	2.0	1	1	1	2	2	2	1	KH	domain
KH_3	PF13014.1	gi|146302861|ref|YP_001190177.1|	-	0.013	15.1	0.3	0.13	11.9	0.0	2.9	3	1	1	4	4	4	0	KH	domain
RNase_PH	PF01138.16	gi|146302862|ref|YP_001190178.1|	-	1.4e-36	125.7	0.0	1.8e-36	125.3	0.0	1.2	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|146302862|ref|YP_001190178.1|	-	6.2e-14	51.6	0.1	1.3e-13	50.6	0.1	1.5	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	2
RNase_PH	PF01138.16	gi|146302863|ref|YP_001190179.1|	-	4.5e-32	111.1	0.0	8.5e-32	110.2	0.0	1.4	1	0	0	1	1	1	1	3'	exoribonuclease	family,	domain	1
RNase_PH_C	PF03725.10	gi|146302863|ref|YP_001190179.1|	-	2e-10	40.4	0.3	8.4e-10	38.4	0.1	2.2	2	0	0	2	2	2	1	3'	exoribonuclease	family,	domain	2
Ribosomal_L37ae	PF01780.14	gi|146302864|ref|YP_001190180.1|	-	1.3e-24	85.8	5.0	1.3e-24	85.8	3.5	1.0	1	0	0	1	1	1	1	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.2	gi|146302864|ref|YP_001190180.1|	-	1.3e-05	24.9	4.5	1.3e-05	24.8	2.7	1.4	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|146302864|ref|YP_001190180.1|	-	0.00069	19.2	1.3	0.00088	18.8	0.9	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
TF_Zn_Ribbon	PF08271.7	gi|146302864|ref|YP_001190180.1|	-	0.0026	17.0	0.2	0.0042	16.3	0.1	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
DUF4379	PF14311.1	gi|146302864|ref|YP_001190180.1|	-	0.012	15.4	5.4	0.36	10.6	0.7	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4379)
CpXC	PF14353.1	gi|146302864|ref|YP_001190180.1|	-	0.012	15.5	0.3	0.2	11.6	0.0	2.0	2	0	0	2	2	2	0	CpXC	protein
Rep_fac-A_C	PF08646.5	gi|146302864|ref|YP_001190180.1|	-	0.016	14.9	2.2	0.019	14.7	1.5	1.1	1	0	0	1	1	1	0	Replication	factor-A	C	terminal	domain
RRN7	PF11781.3	gi|146302864|ref|YP_001190180.1|	-	0.019	14.4	0.8	0.032	13.7	0.6	1.4	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
DUF2318	PF10080.4	gi|146302864|ref|YP_001190180.1|	-	0.028	14.1	0.3	0.034	13.9	0.2	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
DUF721	PF05258.7	gi|146302864|ref|YP_001190180.1|	-	0.033	14.4	0.0	0.039	14.1	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF721)
Ribosomal_S27e	PF01667.12	gi|146302864|ref|YP_001190180.1|	-	0.04	13.4	0.3	0.049	13.1	0.2	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S27
DUF4428	PF14471.1	gi|146302864|ref|YP_001190180.1|	-	0.048	13.3	0.4	0.073	12.8	0.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4428)
zf-C3HC4_3	PF13920.1	gi|146302864|ref|YP_001190180.1|	-	0.051	13.2	0.5	1.1	9.0	0.0	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
HypA	PF01155.14	gi|146302864|ref|YP_001190180.1|	-	0.06	13.0	0.3	0.073	12.7	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Endonuclease_7	PF02945.10	gi|146302864|ref|YP_001190180.1|	-	0.07	12.8	0.4	0.11	12.2	0.3	1.5	1	1	0	1	1	1	0	Recombination	endonuclease	VII
Zn-ribbon_8	PF09723.5	gi|146302864|ref|YP_001190180.1|	-	0.078	12.9	2.3	2.5	8.1	0.2	2.4	2	1	0	2	2	2	0	Zinc	ribbon	domain
DUF1610	PF07754.6	gi|146302864|ref|YP_001190180.1|	-	0.099	12.7	3.1	0.64	10.1	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-C3HC4_2	PF13923.1	gi|146302864|ref|YP_001190180.1|	-	0.14	12.2	1.8	2.9	7.9	1.8	2.0	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
DnaJ_CXXCXGXG	PF00684.14	gi|146302864|ref|YP_001190180.1|	-	0.3	11.1	2.6	0.53	10.3	1.8	1.4	1	1	0	1	1	1	0	DnaJ	central	domain
Prim_Zn_Ribbon	PF08273.7	gi|146302864|ref|YP_001190180.1|	-	0.31	11.1	3.1	0.65	10.1	2.1	1.6	1	1	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
Rubredoxin	PF00301.15	gi|146302864|ref|YP_001190180.1|	-	0.39	10.6	2.5	2.6	8.0	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin
TFIIS_C	PF01096.13	gi|146302864|ref|YP_001190180.1|	-	1.1	8.9	6.8	9.2	5.9	1.3	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zinc_ribbon_5	PF13719.1	gi|146302864|ref|YP_001190180.1|	-	5.1	6.7	6.5	1.9e+02	1.7	4.5	2.3	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|146302864|ref|YP_001190180.1|	-	9	6.0	6.8	4.5e+02	0.6	4.7	2.4	1	1	0	1	1	1	0	zinc-ribbon	domain
Brix	PF04427.13	gi|146302865|ref|YP_001190181.1|	-	2.1e-15	56.9	0.2	2.4e-15	56.7	0.1	1.1	1	0	0	1	1	1	1	Brix	domain
zf-Sec23_Sec24	PF04810.10	gi|146302866|ref|YP_001190182.1|	-	0.039	13.5	0.4	0.068	12.7	0.3	1.5	1	1	0	1	1	1	0	Sec23/Sec24	zinc	finger
Prefoldin_2	PF01920.15	gi|146302867|ref|YP_001190183.1|	-	3.9e-23	81.2	16.8	4.4e-23	81.0	11.6	1.0	1	0	0	1	1	1	1	Prefoldin	subunit
UBN2	PF14223.1	gi|146302867|ref|YP_001190183.1|	-	0.00068	19.4	4.7	0.064	13.0	0.3	2.1	1	1	1	2	2	2	2	gag-polypeptide	of	LTR	copia-type
Thiol_cytolysin	PF01289.14	gi|146302867|ref|YP_001190183.1|	-	0.011	14.1	0.0	0.014	13.8	0.0	1.1	1	0	0	1	1	1	0	Thiol-activated	cytolysin
UPF0449	PF15136.1	gi|146302867|ref|YP_001190183.1|	-	0.012	15.7	1.5	0.012	15.7	1.0	1.8	1	1	1	2	2	2	0	Uncharacterised	protein	family	UPF0449
Snf7	PF03357.16	gi|146302867|ref|YP_001190183.1|	-	0.016	14.5	4.6	0.26	10.6	0.0	2.1	2	0	0	2	2	2	0	Snf7
Prp19_bind	PF06991.6	gi|146302867|ref|YP_001190183.1|	-	0.017	14.4	1.3	0.02	14.1	0.9	1.2	1	0	0	1	1	1	0	Splicing	factor,	Prp19-binding	domain
ETC_C1_NDUFA5	PF04716.9	gi|146302867|ref|YP_001190183.1|	-	0.045	13.2	0.1	0.11	12.0	0.1	1.7	1	0	0	1	1	1	0	ETC	complex	I	subunit	conserved	region
PYC_OADA	PF02436.13	gi|146302867|ref|YP_001190183.1|	-	0.067	12.6	0.6	0.15	11.5	0.4	1.5	1	1	0	1	1	1	0	Conserved	carboxylase	domain
Mnd1	PF03962.10	gi|146302867|ref|YP_001190183.1|	-	0.11	12.2	5.7	0.15	11.7	4.0	1.2	1	0	0	1	1	1	0	Mnd1	family
DUF77	PF01910.12	gi|146302867|ref|YP_001190183.1|	-	0.12	12.0	0.0	0.18	11.4	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF77
Laminin_II	PF06009.7	gi|146302867|ref|YP_001190183.1|	-	0.26	11.0	7.3	1.7	8.4	0.2	2.1	1	1	1	2	2	2	0	Laminin	Domain	II
vATP-synt_E	PF01991.13	gi|146302867|ref|YP_001190183.1|	-	0.27	10.4	7.4	1.9	7.7	5.1	1.9	1	1	0	1	1	1	0	ATP	synthase	(E/31	kDa)	subunit
TelA	PF05816.6	gi|146302867|ref|YP_001190183.1|	-	0.34	9.5	6.9	0.48	9.0	4.8	1.2	1	0	0	1	1	1	0	Toxic	anion	resistance	protein	(TelA)
CENP-F_leu_zip	PF10473.4	gi|146302867|ref|YP_001190183.1|	-	0.41	10.5	10.7	0.15	11.9	0.4	2.2	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
DUF2031	PF09592.5	gi|146302867|ref|YP_001190183.1|	-	0.44	9.6	5.8	0.53	9.3	4.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2031)
TPR_MLP1_2	PF07926.7	gi|146302867|ref|YP_001190183.1|	-	0.45	10.2	12.5	0.29	10.8	3.8	2.1	2	0	0	2	2	2	0	TPR/MLP1/MLP2-like	protein
ASL_C	PF08328.6	gi|146302867|ref|YP_001190183.1|	-	0.46	10.3	2.9	1.2	9.0	0.0	2.1	2	1	0	2	2	2	0	Adenylosuccinate	lyase	C-terminal
TRF	PF08558.5	gi|146302867|ref|YP_001190183.1|	-	0.57	9.4	4.9	0.74	9.1	3.4	1.0	1	0	0	1	1	1	0	Telomere	repeat	binding	factor	(TRF)
FliD_C	PF07195.7	gi|146302867|ref|YP_001190183.1|	-	0.61	9.3	5.0	0.81	8.9	3.1	1.5	1	1	0	1	1	1	0	Flagellar	hook-associated	protein	2	C-terminus
FliD_N	PF02465.13	gi|146302867|ref|YP_001190183.1|	-	0.83	10.0	3.2	4.3	7.7	0.2	2.2	2	0	0	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
DUF3552	PF12072.3	gi|146302867|ref|YP_001190183.1|	-	1.5	8.0	11.1	0.19	10.9	2.5	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Nup54	PF13874.1	gi|146302867|ref|YP_001190183.1|	-	1.5	8.4	9.8	1.1	8.9	0.7	2.2	1	1	0	2	2	2	0	Nucleoporin	complex	subunit	54
MerR-DNA-bind	PF09278.6	gi|146302867|ref|YP_001190183.1|	-	2.7	8.4	10.4	2.1	8.7	0.9	2.6	3	0	0	3	3	3	0	MerR,	DNA	binding
Imm3	PF14425.1	gi|146302867|ref|YP_001190183.1|	-	3.1	7.7	9.2	2.6	8.0	1.8	2.1	1	1	1	2	2	2	0	Immunity	protein	Imm3
PspA_IM30	PF04012.7	gi|146302867|ref|YP_001190183.1|	-	4	6.7	9.0	11	5.3	5.9	1.8	1	1	0	1	1	1	0	PspA/IM30	family
ADIP	PF11559.3	gi|146302867|ref|YP_001190183.1|	-	6.6	6.6	14.4	7.4	6.4	1.3	2.1	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
Spc24	PF08286.6	gi|146302867|ref|YP_001190183.1|	-	8.9	6.0	12.2	4.6e+02	0.5	8.5	2.5	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
Rootletin	PF15035.1	gi|146302867|ref|YP_001190183.1|	-	9.5	6.1	13.6	70	3.3	9.4	1.9	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
ERCC4	PF02732.10	gi|146302868|ref|YP_001190184.1|	-	1.6e-21	76.5	0.0	2.6e-21	75.8	0.0	1.4	1	0	0	1	1	1	1	ERCC4	domain
HHH_2	PF12826.2	gi|146302868|ref|YP_001190184.1|	-	0.0085	15.9	0.0	0.027	14.3	0.0	1.9	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
5_3_exonuc	PF01367.15	gi|146302868|ref|YP_001190184.1|	-	0.024	14.8	0.0	0.054	13.7	0.0	1.6	1	0	0	1	1	1	0	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_5	PF14520.1	gi|146302868|ref|YP_001190184.1|	-	0.052	13.7	0.0	0.1	12.7	0.0	1.5	1	0	0	1	1	1	0	Helix-hairpin-helix	domain
GTP_EFTU	PF00009.22	gi|146302869|ref|YP_001190185.1|	-	2.6e-57	193.3	0.3	4.5e-57	192.5	0.2	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
EFG_IV	PF03764.13	gi|146302869|ref|YP_001190185.1|	-	1e-32	112.1	0.2	6.8e-32	109.5	0.0	2.5	3	0	0	3	3	3	1	Elongation	factor	G,	domain	IV
EFG_II	PF14492.1	gi|146302869|ref|YP_001190185.1|	-	1.9e-23	82.0	0.1	5.8e-23	80.5	0.0	1.9	1	0	0	1	1	1	1	Elongation	Factor	G,	domain	II
EFG_C	PF00679.19	gi|146302869|ref|YP_001190185.1|	-	4.7e-21	74.4	0.0	1.3e-20	73.0	0.0	1.9	1	0	0	1	1	1	1	Elongation	factor	G	C-terminus
GTP_EFTU_D2	PF03144.20	gi|146302869|ref|YP_001190185.1|	-	5e-12	45.7	0.8	2.9e-11	43.3	0.0	2.6	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.18	gi|146302869|ref|YP_001190185.1|	-	0.00036	20.4	0.1	0.00091	19.1	0.1	1.7	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
SRPRB	PF09439.5	gi|146302869|ref|YP_001190185.1|	-	0.073	12.2	0.0	0.26	10.4	0.0	2.0	1	1	0	1	1	1	0	Signal	recognition	particle	receptor	beta	subunit
HAD_2	PF13419.1	gi|146302870|ref|YP_001190186.1|	-	2e-22	80.2	0.0	2.6e-22	79.8	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|146302870|ref|YP_001190186.1|	-	9.7e-14	52.2	0.0	3e-13	50.6	0.0	1.7	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146302870|ref|YP_001190186.1|	-	1.6e-11	43.7	0.0	3.2e-11	42.7	0.0	1.5	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.2	gi|146302870|ref|YP_001190186.1|	-	4.1e-06	27.0	0.0	8.5e-06	26.0	0.0	1.5	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|146302870|ref|YP_001190186.1|	-	0.0082	16.0	0.0	0.2	11.5	0.0	2.6	2	1	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
PrpR_N	PF06506.6	gi|146302870|ref|YP_001190186.1|	-	0.027	13.8	0.0	0.13	11.6	0.0	1.9	2	0	0	2	2	2	0	Propionate	catabolism	activator
DUF447	PF04289.7	gi|146302872|ref|YP_001190188.1|	-	9.9e-33	113.1	0.0	1.2e-32	112.8	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF447)
Iso_dh	PF00180.15	gi|146302873|ref|YP_001190189.1|	-	2.7e-95	319.2	0.3	3.1e-95	319.0	0.2	1.0	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
C5-epim_C	PF06662.8	gi|146302873|ref|YP_001190189.1|	-	0.018	14.3	0.1	0.034	13.4	0.1	1.3	1	0	0	1	1	1	0	D-glucuronyl	C5-epimerase	C-terminus
PdxA	PF04166.7	gi|146302873|ref|YP_001190189.1|	-	0.03	13.5	0.0	0.064	12.4	0.0	1.5	1	0	0	1	1	1	0	Pyridoxal	phosphate	biosynthetic	protein	PdxA
tRNA-synt_1	PF00133.17	gi|146302874|ref|YP_001190190.1|	-	4.8e-185	616.0	1.3	6.5e-185	615.5	0.9	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|146302874|ref|YP_001190190.1|	-	6.7e-22	77.8	1.7	6.7e-22	77.8	1.2	1.7	2	0	0	2	2	2	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|146302874|ref|YP_001190190.1|	-	4.5e-21	74.9	0.7	1.3e-06	27.3	0.0	4.4	4	1	0	4	4	4	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.13	gi|146302874|ref|YP_001190190.1|	-	6.7e-05	21.7	0.0	0.00017	20.4	0.0	1.6	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1_2	PF13603.1	gi|146302874|ref|YP_001190190.1|	-	0.00015	21.1	0.2	0.00036	19.8	0.1	1.6	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|146302874|ref|YP_001190190.1|	-	0.00082	18.5	0.4	0.0023	17.1	0.0	2.0	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(C)	catalytic	domain
Rpr2	PF04032.11	gi|146302874|ref|YP_001190190.1|	-	0.097	12.5	1.2	0.69	9.8	0.3	2.8	3	1	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Methyltrn_RNA_3	PF02598.12	gi|146302875|ref|YP_001190191.1|	-	3.5e-14	52.8	0.0	8.8e-11	41.6	0.0	2.3	2	0	0	2	2	2	2	Putative	RNA	methyltransferase
Ribosomal_L3	PF00297.17	gi|146302876|ref|YP_001190192.1|	-	7e-57	192.8	0.0	8.1e-57	192.5	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L3
Ribosomal_L4	PF00573.17	gi|146302877|ref|YP_001190193.1|	-	8e-35	119.9	0.0	9.3e-35	119.7	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L4/L1	family
Ribosomal_L23	PF00276.15	gi|146302878|ref|YP_001190194.1|	-	1.6e-14	53.5	3.0	2.3e-14	53.0	2.1	1.3	1	1	0	1	1	1	1	Ribosomal	protein	L23
ACP	PF06857.6	gi|146302878|ref|YP_001190194.1|	-	0.0053	16.6	0.1	0.0064	16.3	0.1	1.2	1	0	0	1	1	1	1	Malonate	decarboxylase	delta	subunit	(MdcD)
NKWYS	PF10364.4	gi|146302878|ref|YP_001190194.1|	-	0.044	13.5	0.1	0.05	13.3	0.1	1.0	1	0	0	1	1	1	0	Putative	capsular	polysaccharide	synthesis	protein
Ribosomal_L2_C	PF03947.13	gi|146302879|ref|YP_001190195.1|	-	1.2e-39	135.1	0.4	1.7e-39	134.6	0.3	1.2	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	C-terminal	domain
Ribosomal_L2	PF00181.18	gi|146302879|ref|YP_001190195.1|	-	7.2e-10	38.6	0.0	2e-09	37.2	0.0	1.8	1	0	0	1	1	1	1	Ribosomal	Proteins	L2,	RNA	binding	domain
Ribosomal_S19	PF00203.16	gi|146302880|ref|YP_001190196.1|	-	2.8e-24	84.5	0.2	3.5e-24	84.2	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S19
bZIP_Maf	PF03131.12	gi|146302880|ref|YP_001190196.1|	-	0.082	13.2	0.3	0.14	12.4	0.2	1.3	1	0	0	1	1	1	0	bZIP	Maf	transcription	factor
Ribosomal_L22	PF00237.14	gi|146302881|ref|YP_001190197.1|	-	9.3e-37	125.1	1.4	1.1e-36	124.9	1.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L22p/L17e
Ribosomal_S3_C	PF00189.15	gi|146302882|ref|YP_001190198.1|	-	6.1e-16	58.4	0.5	1.3e-15	57.3	0.4	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S3,	C-terminal	domain
KH_2	PF07650.12	gi|146302882|ref|YP_001190198.1|	-	1.7e-15	56.2	0.0	4.5e-15	54.9	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_4	PF13083.1	gi|146302882|ref|YP_001190198.1|	-	0.0076	15.8	0.0	0.018	14.6	0.0	1.7	1	0	0	1	1	1	1	KH	domain
KH_1	PF00013.24	gi|146302882|ref|YP_001190198.1|	-	0.08	12.6	1.0	0.22	11.1	0.1	2.3	2	0	0	2	2	2	0	KH	domain
KH_3	PF13014.1	gi|146302882|ref|YP_001190198.1|	-	0.13	11.9	0.8	0.46	10.1	0.5	2.0	1	0	0	1	1	1	0	KH	domain
Ribosomal_L29	PF00831.18	gi|146302883|ref|YP_001190199.1|	-	1.8e-19	69.1	6.9	2.1e-19	68.9	4.8	1.1	1	0	0	1	1	1	1	Ribosomal	L29	protein
DUF1192	PF06698.6	gi|146302883|ref|YP_001190199.1|	-	0.028	14.2	5.4	0.04	13.7	0.5	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
DUF4549	PF15082.1	gi|146302883|ref|YP_001190199.1|	-	0.037	13.6	0.7	0.039	13.5	0.5	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4549)
DUF29	PF01724.11	gi|146302883|ref|YP_001190199.1|	-	0.042	13.6	2.2	0.046	13.5	1.6	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF29
GnsAB	PF08178.6	gi|146302883|ref|YP_001190199.1|	-	0.062	12.9	2.8	0.21	11.2	0.6	2.1	1	1	1	2	2	2	0	GnsA/GnsB	family
Interferon	PF00143.14	gi|146302883|ref|YP_001190199.1|	-	0.11	12.3	0.3	0.13	12.1	0.2	1.0	1	0	0	1	1	1	0	Interferon	alpha/beta	domain
Snapin_Pallidin	PF14712.1	gi|146302883|ref|YP_001190199.1|	-	0.2	11.9	3.5	0.24	11.7	2.4	1.1	1	0	0	1	1	1	0	Snapin/Pallidin
DegQ	PF08181.6	gi|146302883|ref|YP_001190199.1|	-	0.99	9.1	4.7	0.48	10.1	1.6	1.7	2	1	0	2	2	2	0	DegQ	(SacQ)	family
Tcell_CD4_Cterm	PF12104.3	gi|146302883|ref|YP_001190199.1|	-	5.7	6.6	5.7	7	6.3	0.1	3.1	3	0	0	3	3	3	0	T	cell	CD4	receptor	C	terminal	region
UPF0086	PF01868.11	gi|146302884|ref|YP_001190200.1|	-	3.2e-15	55.5	0.0	3.3e-15	55.4	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	UPF0086
Ribosomal_S17	PF00366.15	gi|146302885|ref|YP_001190201.1|	-	7.2e-17	61.1	0.3	9e-17	60.8	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S17
Ribosomal_L14	PF00238.14	gi|146302886|ref|YP_001190202.1|	-	3.1e-39	133.5	0.0	3.5e-39	133.3	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L14p/L23e
PAS_3	PF08447.6	gi|146302886|ref|YP_001190202.1|	-	0.092	12.8	0.0	0.13	12.4	0.0	1.3	1	0	0	1	1	1	0	PAS	fold
Ribosomal_L19	PF01245.15	gi|146302886|ref|YP_001190202.1|	-	0.099	12.4	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L19
KOW	PF00467.24	gi|146302887|ref|YP_001190203.1|	-	3.3e-06	26.5	0.1	6.4e-06	25.6	0.1	1.5	1	0	0	1	1	1	1	KOW	motif
Ribosomal_S4e	PF00900.15	gi|146302888|ref|YP_001190204.1|	-	3.3e-23	81.1	0.0	6.1e-23	80.2	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	family	S4e
S4	PF01479.20	gi|146302888|ref|YP_001190204.1|	-	5.3e-10	38.5	0.0	1e-09	37.6	0.0	1.4	1	0	0	1	1	1	1	S4	domain
RS4NT	PF08071.7	gi|146302888|ref|YP_001190204.1|	-	8.8e-08	31.8	2.1	1.6e-07	31.0	1.4	1.4	1	0	0	1	1	1	1	RS4NT	(NUC023)	domain
PTS_EIIA_2	PF00359.17	gi|146302888|ref|YP_001190204.1|	-	0.025	14.3	0.0	0.043	13.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	2
Ribosomal_L5_C	PF00673.16	gi|146302889|ref|YP_001190205.1|	-	2.2e-25	88.1	0.2	7.9e-25	86.4	0.0	1.9	2	1	1	3	3	3	1	ribosomal	L5P	family	C-terminus
Ribosomal_L5	PF00281.14	gi|146302889|ref|YP_001190205.1|	-	7.1e-22	76.9	0.1	1.3e-21	76.0	0.1	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L5
Ribosomal_S14	PF00253.16	gi|146302890|ref|YP_001190206.1|	-	1.6e-14	52.9	3.7	1.8e-14	52.8	2.5	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S14p/S29e
Ribosomal_L37ae	PF01780.14	gi|146302890|ref|YP_001190206.1|	-	0.017	14.9	0.3	0.02	14.7	0.2	1.2	1	0	0	1	1	1	0	Ribosomal	L37ae	protein	family
DZR	PF12773.2	gi|146302890|ref|YP_001190206.1|	-	0.054	13.3	1.0	0.091	12.5	0.7	1.3	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-P11	PF03854.9	gi|146302890|ref|YP_001190206.1|	-	0.066	12.6	0.7	0.091	12.2	0.5	1.2	1	0	0	1	1	1	0	P-11	zinc	finger
A2L_zn_ribbon	PF08792.5	gi|146302890|ref|YP_001190206.1|	-	0.16	11.5	2.9	0.22	11.0	2.0	1.2	1	0	0	1	1	1	0	A2L	zinc	ribbon	domain
RecR	PF02132.10	gi|146302890|ref|YP_001190206.1|	-	0.16	11.4	2.3	1.7	8.1	0.1	2.1	2	0	0	2	2	2	0	RecR	protein
Prim_Zn_Ribbon	PF08273.7	gi|146302890|ref|YP_001190206.1|	-	0.22	11.6	5.5	0.27	11.3	0.6	2.1	1	1	1	2	2	2	0	Zinc-binding	domain	of	primase-helicase
Zn_Tnp_IS1595	PF12760.2	gi|146302890|ref|YP_001190206.1|	-	0.35	10.7	3.2	0.46	10.3	2.2	1.2	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|146302890|ref|YP_001190206.1|	-	1.2	8.8	5.7	7.4	6.3	3.9	2.0	1	1	1	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Ribosomal_S8	PF00410.14	gi|146302891|ref|YP_001190207.1|	-	8.9e-26	90.2	0.1	1.2e-25	89.8	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S8
DUF498	PF04430.9	gi|146302891|ref|YP_001190207.1|	-	0.017	14.7	0.0	0.51	9.9	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF498/DUF598)
Ribosomal_L6	PF00347.18	gi|146302892|ref|YP_001190208.1|	-	5.7e-26	90.8	9.2	1e-12	48.3	2.1	2.1	2	0	0	2	2	2	2	Ribosomal	protein	L6
DNA_pol3_beta	PF00712.14	gi|146302892|ref|YP_001190208.1|	-	0.0055	16.5	1.2	0.49	10.2	0.0	2.2	2	0	0	2	2	2	2	DNA	polymerase	III	beta	subunit,	N-terminal	domain
DUF4469	PF14734.1	gi|146302892|ref|YP_001190208.1|	-	0.049	13.4	1.7	2	8.3	0.0	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4469)	with	IG-like	fold
RNA_bind_2	PF10133.4	gi|146302892|ref|YP_001190208.1|	-	0.062	13.3	4.3	9.3	6.3	1.4	3.6	2	1	2	4	4	4	0	Predicted	RNA-binding	protein
BON	PF04972.12	gi|146302892|ref|YP_001190208.1|	-	0.14	11.9	8.3	0.85	9.4	0.0	4.2	3	2	1	4	4	4	0	BON	domain
Ribosomal_L32e	PF01655.13	gi|146302893|ref|YP_001190209.1|	-	1.7e-36	124.5	0.3	2.2e-36	124.2	0.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L32
Phage_AlpA	PF05930.7	gi|146302893|ref|YP_001190209.1|	-	0.11	12.2	0.7	10	5.9	0.0	2.5	2	0	0	2	2	2	0	Prophage	CP4-57	regulatory	protein	(AlpA)
Ribosomal_L19e	PF01280.15	gi|146302894|ref|YP_001190210.1|	-	6.2e-48	162.3	13.9	7.1e-48	162.1	9.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L19e
Cas_Csa5	PF09702.5	gi|146302894|ref|YP_001190210.1|	-	0.069	13.2	0.7	0.15	12.1	0.2	1.7	1	1	1	2	2	2	0	CRISPR-associated	protein	(Cas_Csa5)
Ribosomal_L18p	PF00861.17	gi|146302895|ref|YP_001190211.1|	-	4e-29	101.2	0.5	5.7e-29	100.7	0.1	1.4	2	0	0	2	2	2	1	Ribosomal	L18p/L5e	family
Ribosomal_L18_c	PF14204.1	gi|146302895|ref|YP_001190211.1|	-	1.2e-13	51.3	0.0	2.2e-13	50.5	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	L18	C-terminal	region
Ribosomal_S5_C	PF03719.10	gi|146302896|ref|YP_001190212.1|	-	4.4e-22	77.1	0.0	7.7e-22	76.3	0.0	1.4	1	0	0	1	1	1	1	Ribosomal	protein	S5,	C-terminal	domain
Ribosomal_S5	PF00333.15	gi|146302896|ref|YP_001190212.1|	-	7.9e-20	70.3	1.1	1.5e-19	69.4	0.8	1.5	1	0	0	1	1	1	1	Ribosomal	protein	S5,	N-terminal	domain
Ribosomal_L30	PF00327.15	gi|146302897|ref|YP_001190213.1|	-	2.5e-13	49.3	0.0	4.5e-13	48.5	0.0	1.5	1	0	0	1	1	1	1	Ribosomal	protein	L30p/L7e
Ribosomal_L18e	PF00828.14	gi|146302898|ref|YP_001190214.1|	-	5.2e-29	101.2	4.5	6.7e-29	100.8	3.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
SecY	PF00344.15	gi|146302899|ref|YP_001190215.1|	-	1.1e-77	261.3	31.4	1.4e-77	260.9	21.8	1.1	1	0	0	1	1	1	1	SecY	translocase
Plug_translocon	PF10559.4	gi|146302899|ref|YP_001190215.1|	-	3.8e-10	39.0	1.4	1.2e-09	37.5	0.5	2.3	2	0	0	2	2	2	1	Plug	domain	of	Sec61p
Bombolitin	PF08096.6	gi|146302899|ref|YP_001190215.1|	-	0.065	13.3	0.0	0.25	11.4	0.0	2.0	1	0	0	1	1	1	0	Bombolitin	family
DUF4233	PF14017.1	gi|146302899|ref|YP_001190215.1|	-	8.8	6.3	25.2	0.58	10.0	3.2	4.7	5	0	0	5	5	5	0	Protein	of	unknown	function	(DUF4233)
AAA_18	PF13238.1	gi|146302900|ref|YP_001190216.1|	-	7.6e-10	39.1	0.0	1e-09	38.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
Thymidylate_kin	PF02223.12	gi|146302900|ref|YP_001190216.1|	-	1.6e-05	24.3	0.0	0.1	11.9	0.0	2.2	2	0	0	2	2	2	2	Thymidylate	kinase
AAA_17	PF13207.1	gi|146302900|ref|YP_001190216.1|	-	3.1e-05	24.7	0.0	4.7e-05	24.2	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
KTI12	PF08433.5	gi|146302900|ref|YP_001190216.1|	-	5.1e-05	22.6	0.1	7.5e-05	22.0	0.1	1.3	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
NTPase_1	PF03266.10	gi|146302900|ref|YP_001190216.1|	-	0.0007	19.3	0.4	0.0014	18.4	0.3	1.4	1	0	0	1	1	1	1	NTPase
AAA_16	PF13191.1	gi|146302900|ref|YP_001190216.1|	-	0.00088	19.3	0.0	0.0011	19.0	0.0	1.2	1	0	0	1	1	1	1	AAA	ATPase	domain
AAA_19	PF13245.1	gi|146302900|ref|YP_001190216.1|	-	0.0011	18.6	0.0	0.0025	17.5	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|146302900|ref|YP_001190216.1|	-	0.0012	18.6	0.0	0.002	18.0	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.12	gi|146302900|ref|YP_001190216.1|	-	0.0026	17.3	0.2	0.0069	15.9	0.1	1.6	1	1	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.1	gi|146302900|ref|YP_001190216.1|	-	0.0035	17.3	0.0	0.0048	16.8	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|146302900|ref|YP_001190216.1|	-	0.0036	16.7	0.0	0.0056	16.1	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_5	PF07728.9	gi|146302900|ref|YP_001190216.1|	-	0.0049	16.5	0.0	0.008	15.9	0.0	1.4	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.1	gi|146302900|ref|YP_001190216.1|	-	0.0065	16.0	0.0	0.011	15.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|146302900|ref|YP_001190216.1|	-	0.0077	16.4	0.0	0.02	15.0	0.0	1.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|146302900|ref|YP_001190216.1|	-	0.012	15.0	0.0	0.02	14.3	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_22	PF13401.1	gi|146302900|ref|YP_001190216.1|	-	0.015	15.4	0.1	0.028	14.5	0.1	1.5	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|146302900|ref|YP_001190216.1|	-	0.015	15.2	0.1	0.02	14.8	0.0	1.4	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Viral_helicase1	PF01443.13	gi|146302900|ref|YP_001190216.1|	-	0.019	14.4	0.0	0.031	13.7	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
DUF2075	PF09848.4	gi|146302900|ref|YP_001190216.1|	-	0.023	13.6	0.0	0.031	13.2	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Arch_ATPase	PF01637.13	gi|146302900|ref|YP_001190216.1|	-	0.026	14.2	0.0	0.039	13.6	0.0	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
SKI	PF01202.17	gi|146302900|ref|YP_001190216.1|	-	0.028	14.2	0.0	0.2	11.5	0.0	2.1	2	0	0	2	2	2	0	Shikimate	kinase
ArgK	PF03308.11	gi|146302900|ref|YP_001190216.1|	-	0.029	13.1	0.1	0.043	12.5	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
KAP_NTPase	PF07693.9	gi|146302900|ref|YP_001190216.1|	-	0.04	12.9	0.0	0.24	10.3	0.0	2.0	2	0	0	2	2	2	0	KAP	family	P-loop	domain
PRK	PF00485.13	gi|146302900|ref|YP_001190216.1|	-	0.04	13.4	0.0	0.064	12.8	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
ABC_tran	PF00005.22	gi|146302900|ref|YP_001190216.1|	-	0.049	13.9	0.0	0.055	13.7	0.0	1.2	1	0	0	1	1	1	0	ABC	transporter
Chordopox_A30L	PF06015.7	gi|146302900|ref|YP_001190216.1|	-	0.058	12.9	0.3	0.12	11.9	0.2	1.5	1	0	0	1	1	1	0	Chordopoxvirus	A30L	protein
T2SE	PF00437.15	gi|146302900|ref|YP_001190216.1|	-	0.11	11.4	0.1	0.18	10.6	0.1	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|146302900|ref|YP_001190216.1|	-	0.12	11.9	0.1	0.25	10.8	0.1	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|146302900|ref|YP_001190216.1|	-	0.15	11.2	0.0	0.21	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
NYD-SP28_assoc	PF14775.1	gi|146302901|ref|YP_001190217.1|	-	0.055	13.1	0.2	0.15	11.7	0.0	1.8	1	1	1	2	2	2	0	Sperm	tail	C-terminal	domain
DUF1512	PF07431.7	gi|146302901|ref|YP_001190217.1|	-	0.28	9.9	0.7	0.39	9.4	0.5	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1512)
Ribosomal_L34e	PF01199.13	gi|146302902|ref|YP_001190218.1|	-	2.6e-17	62.7	5.5	1.5e-15	57.1	3.8	2.0	1	1	0	1	1	1	1	Ribosomal	protein	L34e
Gin	PF10764.4	gi|146302902|ref|YP_001190218.1|	-	0.00049	19.7	1.3	0.0017	18.0	0.9	1.8	1	1	0	1	1	1	1	Inhibitor	of	sigma-G	Gin
DUF4428	PF14471.1	gi|146302902|ref|YP_001190218.1|	-	0.0024	17.5	1.5	0.0041	16.8	1.1	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4428)
zf-P11	PF03854.9	gi|146302902|ref|YP_001190218.1|	-	0.0092	15.4	1.3	0.67	9.4	0.1	2.2	2	0	0	2	2	2	2	P-11	zinc	finger
zf-C3HC4_3	PF13920.1	gi|146302902|ref|YP_001190218.1|	-	0.059	13.0	0.9	6.9	6.4	0.1	2.1	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
FYVE	PF01363.16	gi|146302902|ref|YP_001190218.1|	-	0.064	13.1	1.1	0.11	12.3	0.7	1.4	1	1	0	1	1	1	0	FYVE	zinc	finger
C1_1	PF00130.17	gi|146302902|ref|YP_001190218.1|	-	0.12	12.1	1.3	0.22	11.2	0.9	1.4	1	1	0	1	1	1	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF2685	PF10886.3	gi|146302902|ref|YP_001190218.1|	-	0.13	12.3	0.3	0.17	11.8	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2685)
zf-BED	PF02892.10	gi|146302902|ref|YP_001190218.1|	-	2.7	7.8	5.6	0.87	9.3	0.2	2.4	2	1	1	3	3	3	0	BED	zinc	finger
Cytidylate_kin2	PF13189.1	gi|146302903|ref|YP_001190219.1|	-	4.8e-23	81.9	0.2	1.9e-21	76.7	0.1	2.0	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
AAA_18	PF13238.1	gi|146302903|ref|YP_001190219.1|	-	4e-16	59.4	0.0	5.4e-16	59.0	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146302903|ref|YP_001190219.1|	-	2.4e-12	47.7	0.0	4.6e-12	46.8	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|146302903|ref|YP_001190219.1|	-	9.4e-07	28.8	0.1	1.6e-06	28.0	0.1	1.4	1	1	0	1	1	1	1	Shikimate	kinase
ADK	PF00406.17	gi|146302903|ref|YP_001190219.1|	-	1.1e-05	25.3	0.0	1.8e-05	24.6	0.0	1.3	1	0	0	1	1	1	1	Adenylate	kinase
AAA_33	PF13671.1	gi|146302903|ref|YP_001190219.1|	-	0.00017	21.5	0.2	0.0011	18.8	0.2	2.0	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|146302903|ref|YP_001190219.1|	-	0.00036	20.7	0.3	0.0018	18.4	0.2	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|146302903|ref|YP_001190219.1|	-	0.0016	18.5	0.3	0.0038	17.3	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|146302903|ref|YP_001190219.1|	-	0.002	18.1	0.0	0.0071	16.3	0.0	1.7	1	1	1	2	2	2	1	AAA	domain
Rad17	PF03215.10	gi|146302903|ref|YP_001190219.1|	-	0.0022	16.7	0.8	0.0075	14.9	0.1	1.9	1	1	0	2	2	2	1	Rad17	cell	cycle	checkpoint	protein
CoaE	PF01121.15	gi|146302903|ref|YP_001190219.1|	-	0.0038	16.6	0.1	0.22	10.9	0.0	2.2	1	1	1	2	2	2	1	Dephospho-CoA	kinase
AAA_19	PF13245.1	gi|146302903|ref|YP_001190219.1|	-	0.0045	16.7	0.1	0.016	14.9	0.0	1.8	2	0	0	2	2	2	1	Part	of	AAA	domain
PRK	PF00485.13	gi|146302903|ref|YP_001190219.1|	-	0.0053	16.3	0.1	0.0083	15.7	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_16	PF13191.1	gi|146302903|ref|YP_001190219.1|	-	0.0074	16.2	0.1	0.011	15.7	0.1	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
ABC_tran	PF00005.22	gi|146302903|ref|YP_001190219.1|	-	0.0082	16.4	0.0	0.009	16.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
APS_kinase	PF01583.15	gi|146302903|ref|YP_001190219.1|	-	0.0083	15.7	0.0	0.32	10.6	0.1	2.1	2	0	0	2	2	2	1	Adenylylsulphate	kinase
AAA_14	PF13173.1	gi|146302903|ref|YP_001190219.1|	-	0.015	15.2	0.0	0.027	14.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
T2SE	PF00437.15	gi|146302903|ref|YP_001190219.1|	-	0.022	13.6	1.9	0.053	12.4	0.5	1.9	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
AAA_21	PF13304.1	gi|146302903|ref|YP_001190219.1|	-	0.025	14.5	0.8	0.05	13.5	0.6	1.6	1	1	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|146302903|ref|YP_001190219.1|	-	0.034	14.4	0.5	0.046	14.0	0.3	1.5	1	1	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|146302903|ref|YP_001190219.1|	-	0.035	13.7	0.2	0.061	12.9	0.1	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.1	gi|146302903|ref|YP_001190219.1|	-	0.036	13.6	0.5	0.048	13.2	0.4	1.4	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|146302903|ref|YP_001190219.1|	-	0.043	13.5	0.2	0.091	12.4	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Cytidylate_kin	PF02224.13	gi|146302903|ref|YP_001190219.1|	-	0.056	12.8	0.0	0.1	12.0	0.0	1.4	1	1	0	1	1	1	0	Cytidylate	kinase
RNA_helicase	PF00910.17	gi|146302903|ref|YP_001190219.1|	-	0.058	13.5	0.0	0.09	12.9	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
RuvB_N	PF05496.7	gi|146302903|ref|YP_001190219.1|	-	0.086	11.8	0.0	1.9	7.4	0.0	2.0	1	1	1	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_29	PF13555.1	gi|146302903|ref|YP_001190219.1|	-	0.089	12.3	0.4	0.2	11.1	0.3	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|146302903|ref|YP_001190219.1|	-	0.092	12.1	0.6	0.17	11.2	0.4	1.4	1	0	0	1	1	1	0	AAA-like	domain
UPF0079	PF02367.12	gi|146302903|ref|YP_001190219.1|	-	0.1	12.2	0.1	0.16	11.5	0.1	1.6	1	1	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_5	PF07728.9	gi|146302903|ref|YP_001190219.1|	-	0.1	12.3	0.1	0.25	11.0	0.1	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
CbiA	PF01656.18	gi|146302903|ref|YP_001190219.1|	-	0.11	11.8	0.3	0.27	10.6	0.2	1.6	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
NTPase_1	PF03266.10	gi|146302903|ref|YP_001190219.1|	-	0.12	12.0	0.0	0.18	11.5	0.0	1.3	1	0	0	1	1	1	0	NTPase
AAA_25	PF13481.1	gi|146302903|ref|YP_001190219.1|	-	0.14	11.5	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.7	gi|146302903|ref|YP_001190219.1|	-	0.16	11.0	0.1	0.29	10.2	0.1	1.4	1	0	0	1	1	1	0	Zeta	toxin
Trep_Strep	PF09605.5	gi|146302904|ref|YP_001190220.1|	-	0.0095	15.6	0.6	0.011	15.3	0.4	1.1	1	0	0	1	1	1	1	Hypothetical	bacterial	integral	membrane	protein	(Trep_Strep)
DUF340	PF03956.8	gi|146302904|ref|YP_001190220.1|	-	0.02	14.2	0.1	0.023	13.9	0.1	1.0	1	0	0	1	1	1	0	Membrane	protein	of	unknown	function	(DUF340)
MARVEL	PF01284.18	gi|146302904|ref|YP_001190220.1|	-	0.046	13.5	2.2	0.054	13.3	1.5	1.2	1	0	0	1	1	1	0	Membrane-associating	domain
Archease	PF01951.11	gi|146302906|ref|YP_001190222.1|	-	5.3e-46	155.9	0.6	5.9e-46	155.8	0.4	1.0	1	0	0	1	1	1	1	Archease	protein	family	(MTH1598/TM1083)
Tho2	PF11262.3	gi|146302908|ref|YP_001190224.1|	-	0.088	11.8	0.2	0.65	8.9	0.1	1.9	1	1	0	1	1	1	0	Transcription	factor/nuclear	export	subunit	protein	2
DUF1464	PF07318.7	gi|146302909|ref|YP_001190225.1|	-	6.5e-94	314.5	0.0	1.3e-93	313.5	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1464)
DEDD_Tnp_IS110	PF01548.12	gi|146302909|ref|YP_001190225.1|	-	0.16	11.6	0.0	0.27	10.8	0.0	1.4	1	0	0	1	1	1	0	Transposase
NTP_transf_2	PF01909.18	gi|146302910|ref|YP_001190226.1|	-	9.5e-06	25.8	0.1	2.2e-05	24.7	0.1	1.6	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
CitG	PF01874.11	gi|146302911|ref|YP_001190227.1|	-	2e-39	135.4	0.0	2.4e-39	135.1	0.0	1.1	1	0	0	1	1	1	1	ATP:dephospho-CoA	triphosphoribosyl	transferase
Metallophos_2	PF12850.2	gi|146302912|ref|YP_001190228.1|	-	0.00011	22.0	0.0	0.00013	21.8	0.0	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Glycos_transf_1	PF00534.15	gi|146302914|ref|YP_001190230.1|	-	4.1e-24	84.9	0.0	8.1e-24	83.9	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146302914|ref|YP_001190230.1|	-	2.2e-08	34.2	0.0	4.2e-08	33.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146302914|ref|YP_001190230.1|	-	5.2e-06	26.6	0.0	1.1e-05	25.5	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Sulfolobus_pRN	PF05584.6	gi|146302915|ref|YP_001190231.1|	-	1e-25	89.4	2.5	1.2e-25	89.2	1.7	1.0	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
Rrf2	PF02082.15	gi|146302915|ref|YP_001190231.1|	-	0.00015	21.7	0.1	0.00017	21.6	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|146302915|ref|YP_001190231.1|	-	0.00019	21.0	0.6	0.00024	20.6	0.4	1.1	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|146302915|ref|YP_001190231.1|	-	0.00042	19.9	0.1	0.00055	19.5	0.1	1.1	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|146302915|ref|YP_001190231.1|	-	0.001	18.4	0.4	0.0013	18.0	0.3	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TFIIE_alpha	PF02002.12	gi|146302915|ref|YP_001190231.1|	-	0.0012	18.2	0.1	0.0014	18.1	0.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_20	PF12840.2	gi|146302915|ref|YP_001190231.1|	-	0.0076	16.0	0.2	0.01	15.6	0.1	1.1	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146302915|ref|YP_001190231.1|	-	0.014	15.0	0.1	0.017	14.8	0.1	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
DUF2582	PF10771.4	gi|146302915|ref|YP_001190231.1|	-	0.11	12.4	0.0	0.16	11.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2582)
HTH_34	PF13601.1	gi|146302915|ref|YP_001190231.1|	-	0.11	12.5	0.0	0.13	12.3	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Pox_LP_H2	PF03356.10	gi|146302915|ref|YP_001190231.1|	-	0.11	12.1	0.0	0.14	11.8	0.0	1.2	1	0	0	1	1	1	0	Viral	late	protein	H2
MarR_2	PF12802.2	gi|146302915|ref|YP_001190231.1|	-	0.12	12.0	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	MarR	family
DNA_repr_REX1B	PF14966.1	gi|146302916|ref|YP_001190232.1|	-	0.013	15.8	0.1	0.015	15.6	0.1	1.1	1	0	0	1	1	1	0	DNA	repair	REX1-B
FlaC_arch	PF05377.6	gi|146302916|ref|YP_001190232.1|	-	0.03	14.2	3.0	0.03	14.2	2.1	1.8	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF4391	PF14335.1	gi|146302916|ref|YP_001190232.1|	-	0.034	13.5	1.3	0.04	13.2	0.9	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4391)
DUF1669	PF07894.7	gi|146302916|ref|YP_001190232.1|	-	0.041	13.0	0.0	0.057	12.6	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1669)
Cep57_CLD_2	PF14197.1	gi|146302916|ref|YP_001190232.1|	-	0.046	13.6	3.1	0.061	13.2	2.1	1.2	1	0	0	1	1	1	0	Centrosome	localisation	domain	of	PPC89
DUF573	PF04504.9	gi|146302916|ref|YP_001190232.1|	-	0.058	13.6	1.9	0.064	13.5	1.3	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF573
UPF0122	PF04297.9	gi|146302916|ref|YP_001190232.1|	-	0.065	13.2	1.3	0.076	13.0	0.9	1.1	1	0	0	1	1	1	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Cauli_AT	PF03233.8	gi|146302916|ref|YP_001190232.1|	-	0.065	12.9	1.2	0.075	12.7	0.8	1.1	1	0	0	1	1	1	0	Aphid	transmission	protein
DUF677	PF05055.7	gi|146302916|ref|YP_001190232.1|	-	0.07	11.7	4.1	0.079	11.6	2.9	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF677)
DUF4094	PF13334.1	gi|146302916|ref|YP_001190232.1|	-	0.093	13.1	0.6	0.11	12.8	0.4	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4094)
DUF2730	PF10805.3	gi|146302916|ref|YP_001190232.1|	-	0.095	12.4	1.4	0.11	12.2	0.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2730)
NYD-SP28_assoc	PF14775.1	gi|146302916|ref|YP_001190232.1|	-	0.12	12.1	1.5	0.19	11.4	1.0	1.5	1	1	0	1	1	1	0	Sperm	tail	C-terminal	domain
DMPK_coil	PF08826.5	gi|146302916|ref|YP_001190232.1|	-	0.12	12.2	5.1	0.11	12.3	2.9	1.4	1	1	0	1	1	1	0	DMPK	coiled	coil	domain	like
DUF1978	PF09321.5	gi|146302916|ref|YP_001190232.1|	-	0.13	11.6	7.4	0.17	11.3	5.1	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1978)
Pox_A_type_inc	PF04508.7	gi|146302916|ref|YP_001190232.1|	-	0.24	11.2	4.9	0.26	11.1	1.4	2.3	2	0	0	2	2	2	0	Viral	A-type	inclusion	protein	repeat
RRF	PF01765.14	gi|146302916|ref|YP_001190232.1|	-	0.33	10.4	7.1	0.38	10.2	5.0	1.0	1	0	0	1	1	1	0	Ribosome	recycling	factor
SpoU_sub_bind	PF08032.7	gi|146302916|ref|YP_001190232.1|	-	0.34	11.1	4.1	1.7	8.8	0.1	2.0	1	1	1	2	2	2	0	RNA	2'-O	ribose	methyltransferase	substrate	binding
AAA_23	PF13476.1	gi|146302916|ref|YP_001190232.1|	-	0.5	10.6	3.8	0.58	10.4	2.6	1.0	1	0	0	1	1	1	0	AAA	domain
VASP_tetra	PF08776.6	gi|146302916|ref|YP_001190232.1|	-	0.56	9.5	6.4	1.7	8.0	4.4	1.9	1	1	0	1	1	1	0	VASP	tetramerisation	domain
Bac_small_YrzI	PF09501.5	gi|146302916|ref|YP_001190232.1|	-	1.1	9.1	3.8	6.7	6.6	0.0	2.2	2	0	0	2	2	2	0	Probable	sporulation	protein	(Bac_small_yrzI)
Transposase_22	PF02994.9	gi|146302916|ref|YP_001190232.1|	-	1.1	7.6	8.2	1.2	7.5	5.7	1.0	1	0	0	1	1	1	0	L1	transposable	element
HABP4_PAI-RBP1	PF04774.10	gi|146302916|ref|YP_001190232.1|	-	3.5	8.1	6.0	5	7.6	4.1	1.4	1	1	0	1	1	1	0	Hyaluronan	/	mRNA	binding	family
Tic20	PF09685.5	gi|146302917|ref|YP_001190233.1|	-	0.024	14.5	5.7	0.027	14.4	4.0	1.1	1	0	0	1	1	1	0	Tic20-like	protein
DUF3671	PF12420.3	gi|146302917|ref|YP_001190233.1|	-	0.65	9.9	9.6	0.9	9.5	6.7	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function
Internalin_N	PF12354.3	gi|146302917|ref|YP_001190233.1|	-	2.3	7.8	5.9	7.5	6.2	1.8	2.1	2	0	0	2	2	2	0	Bacterial	adhesion/invasion	protein	N	terminal
Plasmid_stabil	PF05016.9	gi|146302918|ref|YP_001190234.1|	-	0.00027	21.2	0.0	0.00032	21.0	0.0	1.1	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
Pox_L3_FP4	PF03339.9	gi|146302918|ref|YP_001190234.1|	-	0.24	9.8	0.9	3.3	6.0	0.0	2.0	1	1	0	2	2	2	0	Poxvirus	L3/FP4	protein
Helicase_C_2	PF13307.1	gi|146302919|ref|YP_001190235.1|	-	9.3e-25	87.5	0.0	2.4e-24	86.1	0.0	1.7	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|146302919|ref|YP_001190235.1|	-	1.9e-20	72.9	0.0	4.9e-20	71.6	0.0	1.8	1	0	0	1	1	1	1	DEAD_2
ResIII	PF04851.10	gi|146302919|ref|YP_001190235.1|	-	2.5e-09	37.2	0.9	1.7e-08	34.5	0.6	2.2	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|146302919|ref|YP_001190235.1|	-	0.0068	15.9	0.0	1.3	8.5	0.0	2.6	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
DUF2075	PF09848.4	gi|146302919|ref|YP_001190235.1|	-	0.1	11.5	0.2	0.71	8.7	0.0	2.3	3	0	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2075)
ParBc	PF02195.13	gi|146302920|ref|YP_001190236.1|	-	4.7e-16	58.6	0.0	1.3e-15	57.2	0.0	1.8	1	0	0	1	1	1	1	ParB-like	nuclease	domain
RP-C_C	PF11800.3	gi|146302920|ref|YP_001190236.1|	-	0.52	9.9	13.2	0.19	11.3	0.1	2.3	2	0	0	2	2	2	0	Replication	protein	C	C-terminal	region
Cwf_Cwc_15	PF04889.7	gi|146302920|ref|YP_001190236.1|	-	1.2	8.7	29.0	1.3	8.6	14.9	2.1	2	0	0	2	2	2	0	Cwf15/Cwc15	cell	cycle	control	protein
Prothymosin	PF03247.9	gi|146302920|ref|YP_001190236.1|	-	5.6	7.1	37.7	1.8	8.7	16.3	3.2	3	0	0	3	3	3	0	Prothymosin/parathymosin	family
TrmB	PF01978.14	gi|146302921|ref|YP_001190237.1|	-	0.001	18.7	0.1	0.0014	18.2	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|146302921|ref|YP_001190237.1|	-	0.0068	16.4	0.2	0.01	15.8	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF2513	PF10711.4	gi|146302921|ref|YP_001190237.1|	-	0.0082	16.2	0.1	0.01	15.8	0.1	1.1	1	0	0	1	1	1	1	Hypothetical	protein	(DUF2513)
MarR_2	PF12802.2	gi|146302921|ref|YP_001190237.1|	-	0.018	14.7	0.0	0.025	14.2	0.0	1.2	1	0	0	1	1	1	0	MarR	family
Ret_tiss	PF10044.4	gi|146302921|ref|YP_001190237.1|	-	0.033	14.7	0.1	0.049	14.1	0.0	1.3	1	0	0	1	1	1	0	Retinal	tissue	protein
TFIIE_alpha	PF02002.12	gi|146302921|ref|YP_001190237.1|	-	0.035	13.6	0.2	0.04	13.4	0.2	1.1	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_5	PF01022.15	gi|146302921|ref|YP_001190237.1|	-	0.11	12.1	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_43	PF09904.4	gi|146302921|ref|YP_001190237.1|	-	0.13	12.1	0.0	0.15	11.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|146302921|ref|YP_001190237.1|	-	0.21	11.2	1.2	0.23	11.1	0.1	1.8	2	0	0	2	2	2	0	HTH	domain
HTH_27	PF13463.1	gi|146302922|ref|YP_001190238.1|	-	5.1e-07	29.9	0.2	7.7e-07	29.3	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|146302922|ref|YP_001190238.1|	-	9e-06	25.3	1.7	1.4e-05	24.6	0.9	1.5	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146302922|ref|YP_001190238.1|	-	0.0014	18.2	0.1	0.0053	16.4	0.1	1.9	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|146302922|ref|YP_001190238.1|	-	0.002	17.4	1.1	0.0047	16.2	0.8	1.7	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HxlR	PF01638.12	gi|146302922|ref|YP_001190238.1|	-	0.0039	16.7	0.3	0.0051	16.4	0.2	1.2	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Fe_dep_repress	PF01325.14	gi|146302922|ref|YP_001190238.1|	-	0.0078	16.1	0.5	0.1	12.5	0.1	2.5	2	1	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PadR	PF03551.9	gi|146302922|ref|YP_001190238.1|	-	0.0098	15.6	0.4	0.014	15.1	0.3	1.3	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|146302922|ref|YP_001190238.1|	-	0.012	15.5	0.3	0.021	14.8	0.2	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4393	PF14337.1	gi|146302922|ref|YP_001190238.1|	-	0.021	14.2	0.1	0.023	14.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4393)
DUF387	PF04079.11	gi|146302922|ref|YP_001190238.1|	-	0.025	13.9	0.1	0.032	13.5	0.1	1.3	1	0	0	1	1	1	0	Putative	transcriptional	regulators	(Ypuh-like)
HTH_45	PF14947.1	gi|146302922|ref|YP_001190238.1|	-	0.027	14.2	0.4	0.078	12.8	0.3	1.8	1	1	0	1	1	1	0	Winged	helix-turn-helix
NusB	PF01029.13	gi|146302922|ref|YP_001190238.1|	-	0.043	13.7	0.4	0.07	13.1	0.2	1.5	1	1	1	2	2	2	0	NusB	family
MarR	PF01047.17	gi|146302922|ref|YP_001190238.1|	-	0.082	12.6	0.1	0.14	11.8	0.1	1.5	1	1	0	1	1	1	0	MarR	family
DUF3940	PF13076.1	gi|146302922|ref|YP_001190238.1|	-	0.091	12.3	0.5	13	5.4	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3940)
Rio2_N	PF09202.6	gi|146302922|ref|YP_001190238.1|	-	0.11	12.5	0.0	0.2	11.7	0.0	1.3	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_20	PF12840.2	gi|146302922|ref|YP_001190238.1|	-	0.14	11.9	0.1	0.23	11.2	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
SWIM	PF04434.12	gi|146302923|ref|YP_001190239.1|	-	0.11	12.0	0.1	0.15	11.5	0.0	1.4	1	0	0	1	1	1	0	SWIM	zinc	finger
DUF1943	PF09172.6	gi|146302924|ref|YP_001190240.1|	-	0.042	12.7	0.0	0.044	12.6	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1943)
RHH_1	PF01402.16	gi|146302925|ref|YP_001190241.1|	-	3.6e-05	23.4	0.4	4.9e-05	23.0	0.2	1.3	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|146302925|ref|YP_001190241.1|	-	0.077	12.7	0.2	0.085	12.6	0.1	1.1	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
RHH_1	PF01402.16	gi|146302926|ref|YP_001190242.1|	-	0.068	13.0	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Phage_integrase	PF00589.17	gi|146302928|ref|YP_001190244.1|	-	1.1e-13	51.1	0.1	6.4e-13	48.7	0.0	2.3	3	0	0	3	3	3	1	Phage	integrase	family
HTH_23	PF13384.1	gi|146302928|ref|YP_001190244.1|	-	7.6e-05	22.2	0.5	7.6e-05	22.2	0.4	2.4	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4_2	PF08281.7	gi|146302928|ref|YP_001190244.1|	-	0.0012	18.2	2.4	0.0019	17.5	0.1	2.5	3	0	0	3	3	3	1	Sigma-70,	region	4
Phage_int_SAM_4	PF13495.1	gi|146302928|ref|YP_001190244.1|	-	0.0053	17.0	3.8	0.026	14.8	0.0	3.6	3	1	0	3	3	3	1	Phage	integrase,	N-terminal	SAM-like	domain
HTH_29	PF13551.1	gi|146302928|ref|YP_001190244.1|	-	0.0081	16.3	0.5	0.14	12.3	0.0	2.9	3	0	0	3	3	3	1	Winged	helix-turn	helix
HTH_3	PF01381.17	gi|146302928|ref|YP_001190244.1|	-	0.04	13.7	0.0	0.14	12.0	0.0	2.1	1	0	0	1	1	1	0	Helix-turn-helix
A_deaminase_N	PF08451.6	gi|146302928|ref|YP_001190244.1|	-	0.06	13.3	0.1	0.16	11.9	0.1	1.8	1	0	0	1	1	1	0	Adenosine/AMP	deaminase	N-terminal
HTH_22	PF13309.1	gi|146302928|ref|YP_001190244.1|	-	0.061	13.0	0.2	0.41	10.4	0.1	2.6	2	1	0	2	2	2	0	HTH	domain
HTH_28	PF13518.1	gi|146302928|ref|YP_001190244.1|	-	0.13	12.3	0.1	0.13	12.3	0.1	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
DFP	PF04127.10	gi|146302929|ref|YP_001190245.1|	-	1.8e-59	200.5	1.0	1.5e-57	194.2	0.3	2.2	2	0	0	2	2	2	2	DNA	/	pantothenate	metabolism	flavoprotein
Flavoprotein	PF02441.14	gi|146302929|ref|YP_001190245.1|	-	1.5e-28	99.0	0.1	3.5e-28	97.8	0.0	1.7	2	0	0	2	2	2	1	Flavoprotein
VirC1	PF07015.6	gi|146302929|ref|YP_001190245.1|	-	0.099	11.6	0.3	0.84	8.6	0.0	2.4	3	0	0	3	3	3	0	VirC1	protein
Acetyltransf_1	PF00583.19	gi|146302930|ref|YP_001190246.1|	-	2.2e-20	72.4	0.0	3.4e-20	71.8	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|146302930|ref|YP_001190246.1|	-	1.4e-10	41.2	0.1	2.3e-10	40.5	0.1	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|146302930|ref|YP_001190246.1|	-	3.5e-10	40.0	0.0	5e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|146302930|ref|YP_001190246.1|	-	1e-08	34.7	0.1	2e-08	33.8	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_8	PF13523.1	gi|146302930|ref|YP_001190246.1|	-	1.2e-08	34.9	0.0	2.4e-08	33.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|146302930|ref|YP_001190246.1|	-	1.8e-07	31.2	0.3	5.1e-07	29.7	0.2	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|146302930|ref|YP_001190246.1|	-	1.1e-06	28.4	0.1	7.8e-05	22.5	0.1	2.3	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_3	PF13302.1	gi|146302930|ref|YP_001190246.1|	-	3.2e-05	24.1	0.0	6.8e-05	23.0	0.0	1.5	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
CPSase_L_D2	PF02786.12	gi|146302932|ref|YP_001190248.1|	-	3.2e-60	203.0	0.0	4.8e-60	202.4	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_chain	PF00289.17	gi|146302932|ref|YP_001190248.1|	-	6e-41	139.0	0.2	1e-40	138.2	0.2	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
Biotin_carb_C	PF02785.14	gi|146302932|ref|YP_001190248.1|	-	9.1e-36	122.0	0.0	3.2e-35	120.3	0.0	1.9	1	1	1	2	2	2	1	Biotin	carboxylase	C-terminal	domain
ATPgrasp_Ter	PF15632.1	gi|146302932|ref|YP_001190248.1|	-	1.1e-11	44.1	0.0	3.2e-11	42.5	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_4	PF13535.1	gi|146302932|ref|YP_001190248.1|	-	4.2e-09	36.3	0.0	1.1e-08	35.0	0.0	1.7	1	1	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|146302932|ref|YP_001190248.1|	-	5.2e-06	25.9	0.0	1.3e-05	24.7	0.0	1.6	2	0	0	2	2	2	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|146302932|ref|YP_001190248.1|	-	0.0016	17.9	0.0	0.0036	16.7	0.0	1.7	1	1	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|146302932|ref|YP_001190248.1|	-	0.0029	16.9	0.0	0.015	14.6	0.0	2.1	2	0	0	2	2	2	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|146302932|ref|YP_001190248.1|	-	0.044	13.6	0.0	0.082	12.7	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
ATP-grasp_5	PF13549.1	gi|146302932|ref|YP_001190248.1|	-	0.047	12.9	0.0	0.096	11.8	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
Biotin_lipoyl_2	PF13533.1	gi|146302933|ref|YP_001190249.1|	-	3e-20	71.6	8.3	7.5e-10	38.3	0.1	3.1	3	1	1	4	4	4	2	Biotin-lipoyl	like
Biotin_lipoyl	PF00364.17	gi|146302933|ref|YP_001190249.1|	-	2.2e-18	65.6	4.8	2.6e-18	65.4	2.3	1.9	2	0	0	2	2	2	1	Biotin-requiring	enzyme
HlyD	PF00529.15	gi|146302933|ref|YP_001190249.1|	-	2.4e-11	43.5	5.2	1.1e-05	24.9	0.1	2.3	1	1	1	2	2	2	2	HlyD	family	secretion	protein
HlyD_2	PF12700.2	gi|146302933|ref|YP_001190249.1|	-	3.2e-08	33.1	5.3	0.00064	18.9	0.1	2.5	2	1	1	3	3	3	2	HlyD	family	secretion	protein
HlyD_3	PF13437.1	gi|146302933|ref|YP_001190249.1|	-	4.4e-07	30.2	3.7	0.00087	19.5	0.1	2.8	3	1	1	4	4	3	2	HlyD	family	secretion	protein
RnfC_N	PF13375.1	gi|146302933|ref|YP_001190249.1|	-	0.00012	21.7	2.2	0.001	18.7	1.6	2.3	1	1	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
GCV_H	PF01597.14	gi|146302933|ref|YP_001190249.1|	-	0.00021	20.9	1.2	0.0004	20.0	0.2	1.9	2	1	0	2	2	2	1	Glycine	cleavage	H-protein
NQRA	PF05896.6	gi|146302933|ref|YP_001190249.1|	-	0.00034	19.9	0.9	0.0015	17.8	0.6	2.0	1	1	0	1	1	1	1	Na(+)-translocating	NADH-quinone	reductase	subunit	A	(NQRA)
PYNP_C	PF07831.8	gi|146302933|ref|YP_001190249.1|	-	0.0013	18.1	2.9	0.25	10.8	0.0	2.9	3	0	0	3	3	3	2	Pyrimidine	nucleoside	phosphorylase	C-terminal	domain
PTS_EIIA_1	PF00358.15	gi|146302933|ref|YP_001190249.1|	-	0.0018	17.7	0.6	0.15	11.6	0.0	3.2	1	1	2	3	3	3	1	phosphoenolpyruvate-dependent	sugar	phosphotransferase	system,	EIIA	1
QRPTase_N	PF02749.11	gi|146302933|ref|YP_001190249.1|	-	0.0062	16.3	0.3	0.8	9.5	0.0	3.2	2	1	1	3	3	3	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
DUF2118	PF09891.4	gi|146302933|ref|YP_001190249.1|	-	0.019	14.6	1.8	0.12	12.1	0.6	2.5	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
Peptidase_M23	PF01551.17	gi|146302933|ref|YP_001190249.1|	-	0.049	13.6	2.5	0.24	11.4	0.9	2.9	2	1	0	2	2	2	0	Peptidase	family	M23
Apocytochr_F_C	PF01333.14	gi|146302933|ref|YP_001190249.1|	-	0.19	11.5	2.3	2.5	7.9	0.2	2.7	2	1	1	3	3	3	0	Apocytochrome	F,	C-terminal
Lactamase_B_2	PF12706.2	gi|146302934|ref|YP_001190250.1|	-	5.5e-08	32.5	0.1	2.1e-07	30.6	0.0	1.8	1	1	1	2	2	2	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146302934|ref|YP_001190250.1|	-	0.027	14.1	2.3	0.091	12.3	1.6	1.8	1	1	0	1	1	1	0	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|146302934|ref|YP_001190250.1|	-	0.07	12.9	0.1	0.19	11.5	0.1	1.8	1	1	0	1	1	1	0	RNA-metabolising	metallo-beta-lactamase
DRMBL	PF07522.9	gi|146302934|ref|YP_001190250.1|	-	0.078	13.0	0.0	0.17	11.9	0.0	1.6	1	0	0	1	1	1	0	DNA	repair	metallo-beta-lactamase
DNA_ligase_A_M	PF01068.16	gi|146302935|ref|YP_001190251.1|	-	1.5e-59	200.7	0.2	2.8e-59	199.8	0.1	1.4	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	domain
DNA_ligase_A_N	PF04675.9	gi|146302935|ref|YP_001190251.1|	-	1.6e-53	181.1	0.1	3e-53	180.2	0.1	1.5	1	0	0	1	1	1	1	DNA	ligase	N	terminus
DNA_ligase_A_C	PF04679.10	gi|146302935|ref|YP_001190251.1|	-	4.7e-27	94.2	0.0	8.8e-27	93.3	0.0	1.5	1	0	0	1	1	1	1	ATP	dependent	DNA	ligase	C	terminal	region
DNA_ligase_OB_2	PF14743.1	gi|146302935|ref|YP_001190251.1|	-	0.11	12.2	2.0	2.2	7.9	1.4	2.6	1	1	0	1	1	1	0	DNA	ligase	OB-like	domain
dUTPase	PF00692.14	gi|146302936|ref|YP_001190252.1|	-	2.6e-21	75.4	0.0	3.2e-21	75.1	0.0	1.1	1	0	0	1	1	1	1	dUTPase
DCD	PF06559.6	gi|146302936|ref|YP_001190252.1|	-	6.3e-07	28.1	0.0	2e-06	26.4	0.0	1.9	1	1	0	1	1	1	1	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
PhoU_div	PF01865.11	gi|146302937|ref|YP_001190253.1|	-	0.0034	16.5	0.1	0.0054	15.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
ANT	PF03374.9	gi|146302937|ref|YP_001190253.1|	-	0.059	13.4	0.3	5.8	7.0	0.1	2.4	2	1	0	2	2	2	0	Phage	antirepressor	protein	KilAC	domain
RHH_1	PF01402.16	gi|146302937|ref|YP_001190253.1|	-	0.12	12.3	0.8	1.4	8.9	0.0	2.7	3	0	0	3	3	3	0	Ribbon-helix-helix	protein,	copG	family
Thioredoxin_3	PF13192.1	gi|146302938|ref|YP_001190254.1|	-	3.6e-30	103.5	2.9	5.5e-16	58.1	1.5	2.3	2	0	0	2	2	2	2	Thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|146302938|ref|YP_001190254.1|	-	7.5e-08	32.5	3.6	0.0016	18.6	0.1	3.6	2	2	0	2	2	2	2	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|146302938|ref|YP_001190254.1|	-	1e-06	28.3	1.1	0.011	15.3	0.4	2.3	2	0	0	2	2	2	2	Thioredoxin
TrbC_Ftype	PF09673.5	gi|146302938|ref|YP_001190254.1|	-	8.3e-05	22.1	0.1	0.16	11.5	0.0	2.5	2	1	0	2	2	2	2	Type-F	conjugative	transfer	system	pilin	assembly	protein
DUF836	PF05768.9	gi|146302938|ref|YP_001190254.1|	-	0.0012	19.0	0.2	1.4	9.2	0.0	2.3	2	0	0	2	2	2	2	Glutaredoxin-like	domain	(DUF836)
Glutaredoxin	PF00462.19	gi|146302938|ref|YP_001190254.1|	-	0.0096	15.8	7.4	0.34	10.9	1.7	3.1	2	2	0	2	2	2	2	Glutaredoxin
DSBA	PF01323.15	gi|146302938|ref|YP_001190254.1|	-	0.032	13.7	0.1	2.8	7.4	0.0	2.5	2	1	0	2	2	2	0	DSBA-like	thioredoxin	domain
KaiB	PF07689.7	gi|146302938|ref|YP_001190254.1|	-	0.063	12.7	0.0	0.26	10.7	0.0	2.0	2	0	0	2	2	2	0	KaiB	domain
PDDEXK_1	PF12705.2	gi|146302938|ref|YP_001190254.1|	-	0.083	12.2	0.0	3.9	6.7	0.0	2.2	2	0	0	2	2	2	0	PD-(D/E)XK	nuclease	superfamily
zf-ribbon_3	PF13248.1	gi|146302938|ref|YP_001190254.1|	-	0.17	11.1	2.9	1.2	8.4	0.1	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
AMMECR1	PF01871.12	gi|146302939|ref|YP_001190255.1|	-	8.4e-59	197.5	0.0	1e-58	197.2	0.0	1.0	1	0	0	1	1	1	1	AMMECR1
Mut7-C	PF01927.11	gi|146302940|ref|YP_001190256.1|	-	7.1e-41	139.6	5.6	1.7e-39	135.1	3.9	2.0	1	1	0	1	1	1	1	Mut7-C	RNAse	domain
C1_1	PF00130.17	gi|146302940|ref|YP_001190256.1|	-	0.0059	16.3	0.8	0.0098	15.6	0.6	1.4	1	0	0	1	1	1	1	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
OrfB_Zn_ribbon	PF07282.6	gi|146302940|ref|YP_001190256.1|	-	0.0068	16.0	0.6	0.013	15.1	0.4	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
PhnA_Zn_Ribbon	PF08274.7	gi|146302940|ref|YP_001190256.1|	-	0.0093	15.7	0.8	0.016	14.9	0.6	1.4	1	0	0	1	1	1	1	PhnA	Zinc-Ribbon
DHC_N2	PF08393.8	gi|146302940|ref|YP_001190256.1|	-	0.023	13.2	0.1	0.029	12.9	0.1	1.1	1	0	0	1	1	1	0	Dynein	heavy	chain,	N-terminal	region	2
DZR	PF12773.2	gi|146302940|ref|YP_001190256.1|	-	0.029	14.2	0.3	0.053	13.3	0.2	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|146302940|ref|YP_001190256.1|	-	0.047	13.4	0.6	0.086	12.5	0.4	1.4	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
zf-UBP	PF02148.14	gi|146302940|ref|YP_001190256.1|	-	0.15	12.1	4.7	0.28	11.3	3.3	1.4	1	0	0	1	1	1	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
PHD_2	PF13831.1	gi|146302940|ref|YP_001190256.1|	-	0.41	9.9	3.1	0.81	9.0	2.2	1.5	1	0	0	1	1	1	0	PHD-finger
A2L_zn_ribbon	PF08792.5	gi|146302940|ref|YP_001190256.1|	-	0.61	9.6	5.6	3.6	7.1	3.9	2.1	1	1	0	1	1	1	0	A2L	zinc	ribbon	domain
DUF2798	PF11391.3	gi|146302941|ref|YP_001190257.1|	-	0.067	12.9	3.4	0.14	11.9	0.2	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2798)
DUF1422	PF07226.6	gi|146302941|ref|YP_001190257.1|	-	0.082	12.6	3.0	0.091	12.4	2.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1422)
Grp1_Fun34_YaaH	PF01184.14	gi|146302941|ref|YP_001190257.1|	-	0.12	11.6	4.7	0.17	11.1	3.2	1.3	1	1	0	1	1	1	0	GPR1/FUN34/yaaH	family
DUF360	PF04020.8	gi|146302941|ref|YP_001190257.1|	-	0.6	10.4	8.9	0.79	10.1	6.1	1.2	1	0	0	1	1	1	0	Membrane	protein	of	unknown	function
DUF3147	PF11345.3	gi|146302941|ref|YP_001190257.1|	-	0.63	10.0	6.0	11	6.0	3.9	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3147)
FbpA	PF05833.6	gi|146302942|ref|YP_001190258.1|	-	7.9e-39	133.4	13.4	1.2e-38	132.8	9.3	1.3	1	0	0	1	1	1	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
DUF814	PF05670.8	gi|146302942|ref|YP_001190258.1|	-	1.9e-24	85.3	0.0	3.8e-24	84.3	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF814)
AKNA	PF12443.3	gi|146302942|ref|YP_001190258.1|	-	0.018	15.0	2.7	0.018	15.0	1.9	2.7	1	1	1	2	2	2	0	AT-hook-containing	transcription	factor
H-kinase_dim	PF02895.9	gi|146302942|ref|YP_001190258.1|	-	0.019	15.3	5.0	3.7	7.9	0.5	3.1	3	0	0	3	3	3	0	Signal	transducing	histidine	kinase,	homodimeric	domain
DUF904	PF06005.7	gi|146302942|ref|YP_001190258.1|	-	0.049	13.9	0.7	0.049	13.9	0.5	3.5	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF904)
Laminin_I	PF06008.9	gi|146302942|ref|YP_001190258.1|	-	0.12	11.6	13.9	0.61	9.3	1.9	3.1	3	0	0	3	3	3	0	Laminin	Domain	I
Trans_reg_C	PF00486.23	gi|146302942|ref|YP_001190258.1|	-	0.16	11.8	1.7	6.9	6.6	0.1	3.1	3	0	0	3	3	2	0	Transcriptional	regulatory	protein,	C	terminal
Tweety	PF04906.8	gi|146302942|ref|YP_001190258.1|	-	0.64	8.3	1.6	0.94	7.8	0.5	1.6	1	1	0	1	1	1	0	Tweety
Syntaxin	PF00804.20	gi|146302942|ref|YP_001190258.1|	-	1	9.5	14.0	0.043	13.9	1.0	2.9	2	1	1	3	3	3	0	Syntaxin
Striatin	PF08232.7	gi|146302942|ref|YP_001190258.1|	-	1.4	9.1	18.8	3.9	7.8	11.1	2.3	2	0	0	2	2	2	0	Striatin	family
CENP-H	PF05837.7	gi|146302942|ref|YP_001190258.1|	-	2.9	8.0	15.1	0.77	9.9	1.3	3.2	3	0	0	3	3	3	0	Centromere	protein	H	(CENP-H)
DUF948	PF06103.6	gi|146302942|ref|YP_001190258.1|	-	3.5	7.5	11.7	9.1	6.2	1.4	3.2	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
ISG65-75	PF11727.3	gi|146302942|ref|YP_001190258.1|	-	5.6	5.9	19.3	0.68	8.9	10.3	1.6	2	0	0	2	2	2	0	Invariant	surface	glycoprotein
Fib_alpha	PF08702.5	gi|146302942|ref|YP_001190258.1|	-	6	6.9	11.9	3.4	7.7	6.2	2.0	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
zf-C2H2_4	PF13894.1	gi|146302943|ref|YP_001190259.1|	-	0.023	15.0	0.2	0.052	13.8	0.1	1.6	1	0	0	1	1	1	0	C2H2-type	zinc	finger
PfkB	PF00294.19	gi|146302944|ref|YP_001190260.1|	-	0.027	13.6	0.0	0.061	12.4	0.0	1.7	2	0	0	2	2	2	0	pfkB	family	carbohydrate	kinase
AAA_10	PF12846.2	gi|146302947|ref|YP_001190263.1|	-	2.1e-23	83.2	0.4	4.2e-21	75.6	0.3	2.4	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|146302947|ref|YP_001190263.1|	-	4.4e-06	26.6	0.0	2.3e-05	24.3	0.0	2.3	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF87
TraG-D_C	PF12696.2	gi|146302947|ref|YP_001190263.1|	-	8.6e-05	22.4	0.0	0.00015	21.5	0.0	1.4	1	0	0	1	1	1	1	TraM	recognition	site	of	TraD	and	TraG
DUF853	PF05872.7	gi|146302947|ref|YP_001190263.1|	-	9.4e-05	20.9	0.0	0.00032	19.1	0.0	1.7	2	0	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|146302947|ref|YP_001190263.1|	-	0.00014	21.4	0.0	0.0011	18.4	0.0	2.1	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
TrwB_AAD_bind	PF10412.4	gi|146302947|ref|YP_001190263.1|	-	0.00035	19.3	0.0	0.0027	16.3	0.0	2.0	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
T4SS-DNA_transf	PF02534.9	gi|146302947|ref|YP_001190263.1|	-	0.0042	15.7	0.0	0.016	13.8	0.0	1.7	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
ResIII	PF04851.10	gi|146302947|ref|YP_001190263.1|	-	0.0099	15.7	0.0	0.021	14.6	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.1	gi|146302947|ref|YP_001190263.1|	-	0.047	13.8	0.2	0.52	10.4	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
AAA_17	PF13207.1	gi|146302947|ref|YP_001190263.1|	-	0.073	13.8	1.6	0.22	12.3	0.2	2.7	2	1	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.12	gi|146302947|ref|YP_001190263.1|	-	0.1	12.0	0.8	1.2	8.5	0.0	2.8	4	0	0	4	4	4	0	IstB-like	ATP	binding	protein
TAN	PF11640.3	gi|146302947|ref|YP_001190263.1|	-	0.12	12.0	0.3	2.2	8.0	0.1	2.2	2	0	0	2	2	2	0	Telomere-length	maintenance	and	DNA	damage	repair
AAA_23	PF13476.1	gi|146302947|ref|YP_001190263.1|	-	0.12	12.6	1.4	1.7	8.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
NACHT	PF05729.7	gi|146302947|ref|YP_001190263.1|	-	0.13	11.9	0.0	0.96	9.0	0.0	2.1	2	0	0	2	2	2	0	NACHT	domain
T2SE	PF00437.15	gi|146302947|ref|YP_001190263.1|	-	0.15	10.9	0.0	0.26	10.1	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF3896	PF13035.1	gi|146302948|ref|YP_001190264.1|	-	0.13	12.3	1.9	0.9	9.6	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3896)
Semialdhyde_dh	PF01118.19	gi|146302949|ref|YP_001190265.1|	-	2.3e-35	121.4	0.0	8.9e-35	119.6	0.0	1.9	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|146302949|ref|YP_001190265.1|	-	1.2e-09	38.2	0.0	1.6e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
AA_kinase	PF00696.23	gi|146302950|ref|YP_001190266.1|	-	3.6e-27	95.4	5.0	4.1e-27	95.2	3.5	1.0	1	0	0	1	1	1	1	Amino	acid	kinase	family
AsnC_trans_reg	PF01037.16	gi|146302951|ref|YP_001190267.1|	-	1.3e-14	53.6	0.1	2.7e-14	52.6	0.0	1.6	2	0	0	2	2	2	1	AsnC	family
HTH_AsnC-type	PF13404.1	gi|146302951|ref|YP_001190267.1|	-	1.3e-12	47.0	0.1	2.3e-12	46.2	0.1	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.1	gi|146302951|ref|YP_001190267.1|	-	1.2e-11	43.7	1.8	4.1e-11	42.0	0.6	2.2	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|146302951|ref|YP_001190267.1|	-	5.6e-07	29.1	2.3	9.9e-07	28.3	0.3	2.2	3	0	0	3	3	3	1	HTH	domain
HTH_Mga	PF08280.6	gi|146302951|ref|YP_001190267.1|	-	9.9e-06	25.2	0.3	2e-05	24.2	0.2	1.5	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_DeoR	PF08220.7	gi|146302951|ref|YP_001190267.1|	-	0.00037	19.9	0.2	0.00065	19.1	0.1	1.4	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
NapD	PF03927.8	gi|146302951|ref|YP_001190267.1|	-	0.00045	19.9	0.8	0.001	18.8	0.2	1.8	2	1	0	2	2	2	1	NapD	protein
DUF4423	PF14394.1	gi|146302951|ref|YP_001190267.1|	-	0.0012	18.4	0.4	0.0017	17.9	0.3	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
DUF2250	PF10007.4	gi|146302951|ref|YP_001190267.1|	-	0.0018	18.1	0.4	0.0037	17.1	0.3	1.5	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
TrmB	PF01978.14	gi|146302951|ref|YP_001190267.1|	-	0.0035	17.0	0.3	0.0074	15.9	0.2	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|146302951|ref|YP_001190267.1|	-	0.0061	16.2	0.2	0.041	13.5	0.1	2.3	3	0	0	3	3	3	1	MarR	family
HTH_34	PF13601.1	gi|146302951|ref|YP_001190267.1|	-	0.011	15.7	0.1	0.017	15.1	0.1	1.4	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
PAX	PF00292.13	gi|146302951|ref|YP_001190267.1|	-	0.022	14.4	0.6	0.49	10.1	0.4	2.3	1	1	0	1	1	1	0	'Paired	box'	domain
MarR_2	PF12802.2	gi|146302951|ref|YP_001190267.1|	-	0.024	14.2	0.0	0.05	13.2	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_27	PF13463.1	gi|146302951|ref|YP_001190267.1|	-	0.027	14.8	0.2	0.068	13.5	0.0	1.7	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Rrf2	PF02082.15	gi|146302951|ref|YP_001190267.1|	-	0.049	13.7	0.5	0.17	12.0	0.2	2.0	2	1	1	3	3	2	0	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|146302951|ref|YP_001190267.1|	-	0.065	12.7	0.9	0.096	12.2	0.6	1.4	1	0	0	1	1	1	0	TFIIE	alpha	subunit
FeoC	PF09012.5	gi|146302951|ref|YP_001190267.1|	-	0.071	12.8	0.0	0.11	12.2	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
HTH_20	PF12840.2	gi|146302951|ref|YP_001190267.1|	-	0.08	12.7	0.0	0.13	12.0	0.0	1.2	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_9	PF08221.6	gi|146302951|ref|YP_001190267.1|	-	0.11	12.3	0.1	0.24	11.2	0.0	1.6	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_Tnp_IS630	PF01710.11	gi|146302951|ref|YP_001190267.1|	-	0.12	12.0	1.7	0.18	11.5	1.2	1.4	1	1	0	1	1	1	0	Transposase
Fe_dep_repress	PF01325.14	gi|146302951|ref|YP_001190267.1|	-	0.16	11.9	0.7	0.29	11.1	0.1	1.8	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
zinc_ribbon_2	PF13240.1	gi|146302952|ref|YP_001190268.1|	-	0.012	15.0	1.0	0.62	9.6	0.2	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146302952|ref|YP_001190268.1|	-	0.016	14.4	1.0	0.031	13.6	0.7	1.5	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_4	PF13717.1	gi|146302952|ref|YP_001190268.1|	-	0.029	14.0	0.3	0.093	12.4	0.3	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|146302952|ref|YP_001190268.1|	-	0.036	14.3	0.3	0.05	13.9	0.2	1.4	1	1	0	1	1	1	0	Restriction	alleviation	protein	Lar
zinc_ribbon_5	PF13719.1	gi|146302952|ref|YP_001190268.1|	-	0.047	13.2	0.3	0.13	11.8	0.2	1.8	1	1	1	2	2	2	0	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.11	gi|146302952|ref|YP_001190268.1|	-	0.047	13.3	0.5	0.18	11.5	0.1	1.9	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ribbon_3	PF13248.1	gi|146302952|ref|YP_001190268.1|	-	0.05	12.8	0.5	0.63	9.3	0.1	2.1	2	0	0	2	2	2	0	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|146302952|ref|YP_001190268.1|	-	0.12	11.8	0.5	6	6.4	0.0	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146302952|ref|YP_001190268.1|	-	0.16	11.9	0.2	1.5	8.8	0.0	2.0	2	0	0	2	2	2	0	Zinc	ribbon	domain
Desulfoferrod_N	PF06397.7	gi|146302952|ref|YP_001190268.1|	-	0.47	9.8	2.5	0.99	8.8	1.5	1.9	1	1	0	1	1	1	0	Desulfoferrodoxin,	N-terminal	domain
RimK	PF08443.6	gi|146302953|ref|YP_001190269.1|	-	8e-44	149.3	0.0	1e-43	149.0	0.0	1.1	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146302953|ref|YP_001190269.1|	-	2.4e-15	56.7	0.0	3.8e-15	56.1	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|146302953|ref|YP_001190269.1|	-	6.4e-12	44.9	0.0	9.2e-12	44.4	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|146302953|ref|YP_001190269.1|	-	6.5e-06	26.1	0.0	9.7e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|146302953|ref|YP_001190269.1|	-	1e-05	24.9	0.0	1.8e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATPgrasp_Ter	PF15632.1	gi|146302953|ref|YP_001190269.1|	-	6.7e-05	21.7	0.0	7.6e-05	21.5	0.0	1.1	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
Dala_Dala_lig_C	PF07478.8	gi|146302953|ref|YP_001190269.1|	-	7.1e-05	22.2	0.0	0.002	17.5	0.0	2.1	1	1	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.1	gi|146302953|ref|YP_001190269.1|	-	0.00015	21.0	0.0	0.00033	19.9	0.0	1.5	1	1	1	2	2	2	1	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|146302953|ref|YP_001190269.1|	-	0.0043	16.4	0.0	0.006	15.9	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_YheCD	PF14398.1	gi|146302953|ref|YP_001190269.1|	-	0.088	11.5	0.0	0.24	10.1	0.0	1.7	2	0	0	2	2	2	0	YheC/D	like	ATP-grasp
ATP-grasp_2	PF08442.5	gi|146302953|ref|YP_001190269.1|	-	0.12	11.7	0.0	0.22	10.8	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
Aminotran_3	PF00202.16	gi|146302954|ref|YP_001190270.1|	-	1.3e-100	336.5	0.0	1.7e-100	336.1	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|146302954|ref|YP_001190270.1|	-	0.011	14.7	0.0	0.016	14.1	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Peptidase_M20	PF01546.23	gi|146302955|ref|YP_001190271.1|	-	2.7e-17	62.8	0.0	3.3e-17	62.6	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|146302955|ref|YP_001190271.1|	-	4.6e-07	29.5	0.0	8e-07	28.7	0.0	1.4	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Peptidase_M28	PF04389.12	gi|146302955|ref|YP_001190271.1|	-	0.0081	15.9	0.0	0.011	15.4	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	M28
Prenyltransf	PF01255.14	gi|146302956|ref|YP_001190272.1|	-	2.5e-71	239.3	1.5	2.8e-71	239.1	1.0	1.0	1	0	0	1	1	1	1	Putative	undecaprenyl	diphosphate	synthase
RNaseH_C	PF09293.5	gi|146302956|ref|YP_001190272.1|	-	0.28	11.1	2.2	4.3	7.2	0.2	2.1	1	1	1	2	2	2	0	T4	RNase	H,	C	terminal
Ribosomal_S8e	PF01201.17	gi|146302957|ref|YP_001190273.1|	-	1.5e-35	122.1	3.7	1.7e-35	122.0	2.6	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S8e
SRP19	PF01922.12	gi|146302958|ref|YP_001190274.1|	-	0.0011	19.4	0.0	0.0017	18.8	0.0	1.3	1	0	0	1	1	1	1	SRP19	protein
Epimerase	PF01370.16	gi|146302959|ref|YP_001190275.1|	-	6.2e-40	137.0	0.0	8.6e-40	136.6	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|146302959|ref|YP_001190275.1|	-	2.6e-13	49.5	0.0	2.9e-13	49.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.14	gi|146302959|ref|YP_001190275.1|	-	1.4e-12	46.9	0.0	1.7e-12	46.6	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|146302959|ref|YP_001190275.1|	-	1.8e-12	46.7	0.0	2.7e-08	33.0	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
NAD_binding_10	PF13460.1	gi|146302959|ref|YP_001190275.1|	-	2.3e-08	34.2	0.0	3.5e-08	33.6	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Polysacc_synt_2	PF02719.10	gi|146302959|ref|YP_001190275.1|	-	5.5e-08	32.0	0.1	6.4e-06	25.2	0.1	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
adh_short	PF00106.20	gi|146302959|ref|YP_001190275.1|	-	2.8e-07	30.6	0.6	0.0011	18.9	0.1	2.2	1	1	1	2	2	2	2	short	chain	dehydrogenase
KR	PF08659.5	gi|146302959|ref|YP_001190275.1|	-	8.8e-06	25.5	0.6	0.0077	15.9	0.1	2.2	1	1	1	2	2	2	2	KR	domain
NmrA	PF05368.8	gi|146302959|ref|YP_001190275.1|	-	0.00035	19.8	0.1	0.0072	15.6	0.0	2.1	2	0	0	2	2	2	1	NmrA-like	family
DUF2671	PF10877.3	gi|146302959|ref|YP_001190275.1|	-	0.11	12.3	0.0	0.22	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2671)
DUF3990	PF13151.1	gi|146302960|ref|YP_001190276.1|	-	0.068	12.5	0.1	0.079	12.3	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3990)
Antitoxin-MazE	PF04014.13	gi|146302961|ref|YP_001190277.1|	-	5.4e-07	29.1	1.5	8.6e-07	28.5	1.0	1.4	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
AbrB-like	PF14250.1	gi|146302961|ref|YP_001190277.1|	-	0.11	12.4	0.1	0.17	11.8	0.0	1.3	1	0	0	1	1	1	0	AbrB-like	transcriptional	regulator
Fst_toxin	PF13955.1	gi|146302962|ref|YP_001190278.1|	-	0.17	11.5	4.6	3.8	7.2	0.4	2.8	2	0	0	2	2	2	0	Toxin	Fst,	type	I	toxin-antitoxin	system
DUF1056	PF06341.6	gi|146302962|ref|YP_001190278.1|	-	1.1	9.3	19.0	0.2	11.7	0.6	3.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1056)
ABC_tran	PF00005.22	gi|146302964|ref|YP_001190280.1|	-	6.4e-30	104.2	0.0	2.2e-12	47.4	0.0	3.3	2	1	1	3	3	3	3	ABC	transporter
AAA_21	PF13304.1	gi|146302964|ref|YP_001190280.1|	-	6e-16	59.2	8.1	0.0027	17.7	0.1	4.3	2	2	2	4	4	4	4	AAA	domain
AAA_17	PF13207.1	gi|146302964|ref|YP_001190280.1|	-	2.5e-08	34.7	1.1	0.00026	21.7	0.0	2.8	2	2	0	2	2	2	2	AAA	domain
AAA_29	PF13555.1	gi|146302964|ref|YP_001190280.1|	-	2.5e-08	33.3	0.0	0.0048	16.4	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_18	PF13238.1	gi|146302964|ref|YP_001190280.1|	-	6.6e-08	32.9	0.0	0.00022	21.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
NB-ARC	PF00931.17	gi|146302964|ref|YP_001190280.1|	-	7.4e-08	31.5	0.0	0.0037	16.1	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
AAA_15	PF13175.1	gi|146302964|ref|YP_001190280.1|	-	8.1e-08	31.7	0.0	0.006	15.6	0.0	2.7	3	0	0	3	3	3	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146302964|ref|YP_001190280.1|	-	1.1e-07	32.3	0.0	0.0074	16.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
NACHT	PF05729.7	gi|146302964|ref|YP_001190280.1|	-	1.4e-07	31.3	0.0	0.002	17.7	0.0	2.4	2	0	0	2	2	2	2	NACHT	domain
MMR_HSR1	PF01926.18	gi|146302964|ref|YP_001190280.1|	-	3.6e-07	30.1	0.0	0.012	15.5	0.0	2.4	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
AAA_16	PF13191.1	gi|146302964|ref|YP_001190280.1|	-	3.9e-07	30.2	0.0	0.0032	17.4	0.0	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
DUF258	PF03193.11	gi|146302964|ref|YP_001190280.1|	-	4.1e-07	29.3	0.0	0.018	14.1	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
AAA_22	PF13401.1	gi|146302964|ref|YP_001190280.1|	-	6.9e-07	29.4	0.0	0.013	15.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146302964|ref|YP_001190280.1|	-	1.3e-06	27.8	0.1	0.028	13.6	0.0	3.4	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
AAA_33	PF13671.1	gi|146302964|ref|YP_001190280.1|	-	1.3e-06	28.3	0.0	0.0086	15.9	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA	PF00004.24	gi|146302964|ref|YP_001190280.1|	-	1.9e-06	28.0	0.0	0.0089	16.2	0.0	2.4	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Miro	PF08477.8	gi|146302964|ref|YP_001190280.1|	-	2.3e-06	28.1	0.0	0.11	13.0	0.0	2.3	2	0	0	2	2	2	2	Miro-like	protein
UPF0079	PF02367.12	gi|146302964|ref|YP_001190280.1|	-	3e-06	26.8	0.3	0.012	15.2	0.1	2.3	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
MobB	PF03205.9	gi|146302964|ref|YP_001190280.1|	-	3.1e-06	26.9	1.6	0.032	13.9	0.0	2.4	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.1	gi|146302964|ref|YP_001190280.1|	-	4.4e-06	26.6	1.4	0.019	14.8	0.1	3.2	2	2	0	2	2	2	2	AAA	domain
DUF3584	PF12128.3	gi|146302964|ref|YP_001190280.1|	-	5.7e-06	23.9	1.4	0.00022	18.7	0.0	2.0	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3584)
Arch_ATPase	PF01637.13	gi|146302964|ref|YP_001190280.1|	-	5.8e-06	26.1	0.0	0.017	14.8	0.0	2.2	2	0	0	2	2	2	2	Archaeal	ATPase
cobW	PF02492.14	gi|146302964|ref|YP_001190280.1|	-	2.5e-05	23.8	0.1	0.012	15.1	0.0	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
SRP54	PF00448.17	gi|146302964|ref|YP_001190280.1|	-	2.7e-05	23.7	0.3	0.03	13.7	0.1	2.2	2	0	0	2	2	2	2	SRP54-type	protein,	GTPase	domain
NTPase_1	PF03266.10	gi|146302964|ref|YP_001190280.1|	-	8.7e-05	22.2	0.3	0.21	11.2	0.0	2.6	2	0	0	2	2	2	2	NTPase
AAA_5	PF07728.9	gi|146302964|ref|YP_001190280.1|	-	8.8e-05	22.2	0.2	0.02	14.6	0.0	2.5	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.1	gi|146302964|ref|YP_001190280.1|	-	0.00014	21.8	0.0	0.039	13.9	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
RNA_helicase	PF00910.17	gi|146302964|ref|YP_001190280.1|	-	0.00014	22.0	0.0	0.13	12.3	0.0	2.4	2	0	0	2	2	2	1	RNA	helicase
AAA_25	PF13481.1	gi|146302964|ref|YP_001190280.1|	-	0.00016	21.1	0.0	0.27	10.6	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_24	PF13479.1	gi|146302964|ref|YP_001190280.1|	-	0.00023	20.8	0.0	0.21	11.1	0.1	2.2	2	0	0	2	2	2	1	AAA	domain
PduV-EutP	PF10662.4	gi|146302964|ref|YP_001190280.1|	-	0.00025	20.5	0.1	0.45	10.0	0.0	2.6	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
ATP-synt_ab	PF00006.20	gi|146302964|ref|YP_001190280.1|	-	0.0011	18.4	0.0	0.04	13.4	0.0	2.2	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_10	PF12846.2	gi|146302964|ref|YP_001190280.1|	-	0.0017	17.8	1.3	0.3	10.4	0.1	3.0	3	0	0	3	3	3	1	AAA-like	domain
Pox_A32	PF04665.7	gi|146302964|ref|YP_001190280.1|	-	0.0018	17.6	0.2	1.4	8.1	0.1	2.3	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA_30	PF13604.1	gi|146302964|ref|YP_001190280.1|	-	0.0021	17.6	0.0	2.1	7.8	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
Septin	PF00735.13	gi|146302964|ref|YP_001190280.1|	-	0.0022	17.0	0.1	0.17	10.8	0.0	2.2	2	0	0	2	2	2	1	Septin
VirE	PF05272.6	gi|146302964|ref|YP_001190280.1|	-	0.0025	17.3	0.0	0.5	9.8	0.0	2.3	2	0	0	2	2	2	1	Virulence-associated	protein	E
ArgK	PF03308.11	gi|146302964|ref|YP_001190280.1|	-	0.0026	16.5	0.0	0.73	8.5	0.0	2.4	2	0	0	2	2	2	1	ArgK	protein
KAP_NTPase	PF07693.9	gi|146302964|ref|YP_001190280.1|	-	0.0028	16.6	0.0	1.3	7.9	0.0	2.2	2	0	0	2	2	2	1	KAP	family	P-loop	domain
T2SE	PF00437.15	gi|146302964|ref|YP_001190280.1|	-	0.0046	15.8	0.0	2.1	7.1	0.0	2.2	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
FeoB_N	PF02421.13	gi|146302964|ref|YP_001190280.1|	-	0.0053	16.0	0.7	1.7	7.8	0.1	2.3	2	0	0	2	2	2	1	Ferrous	iron	transport	protein	B
FtsK_SpoIIIE	PF01580.13	gi|146302964|ref|YP_001190280.1|	-	0.0057	16.1	0.0	0.56	9.6	0.0	2.3	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
SbcCD_C	PF13558.1	gi|146302964|ref|YP_001190280.1|	-	0.0057	16.5	0.0	4.3	7.3	0.0	2.5	2	0	0	2	2	2	0	Putative	exonuclease	SbcCD,	C	subunit
Viral_helicase1	PF01443.13	gi|146302964|ref|YP_001190280.1|	-	0.0059	16.1	0.0	0.55	9.7	0.0	2.5	3	0	0	3	3	2	1	Viral	(Superfamily	1)	RNA	helicase
Zeta_toxin	PF06414.7	gi|146302964|ref|YP_001190280.1|	-	0.006	15.7	0.0	1.1	8.3	0.0	2.3	2	0	0	2	2	2	1	Zeta	toxin
CPT	PF07931.7	gi|146302964|ref|YP_001190280.1|	-	0.011	15.3	0.0	0.2	11.2	0.0	2.2	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
AAA_13	PF13166.1	gi|146302964|ref|YP_001190280.1|	-	0.011	14.2	0.0	0.47	8.8	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|146302964|ref|YP_001190280.1|	-	0.012	14.2	0.1	3.1	6.3	0.0	2.1	2	0	0	2	2	2	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ATP_bind_1	PF03029.12	gi|146302964|ref|YP_001190280.1|	-	0.019	14.5	0.1	4.6	6.6	0.0	2.3	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AIG1	PF04548.11	gi|146302964|ref|YP_001190280.1|	-	0.019	14.0	0.4	0.11	11.5	0.0	2.3	2	0	0	2	2	2	0	AIG1	family
AAA_19	PF13245.1	gi|146302964|ref|YP_001190280.1|	-	0.02	14.6	0.0	6	6.6	0.0	2.5	2	0	0	2	2	2	0	Part	of	AAA	domain
SRPRB	PF09439.5	gi|146302964|ref|YP_001190280.1|	-	0.02	14.0	0.0	4.2	6.5	0.0	2.3	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
GTP_EFTU	PF00009.22	gi|146302964|ref|YP_001190280.1|	-	0.027	13.9	0.0	1.8	7.9	0.0	2.4	2	0	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
Arf	PF00025.16	gi|146302964|ref|YP_001190280.1|	-	0.062	12.5	0.2	1.5	8.0	0.0	2.2	2	0	0	2	2	2	0	ADP-ribosylation	factor	family
IstB_IS21	PF01695.12	gi|146302964|ref|YP_001190280.1|	-	0.076	12.4	0.0	1.8	7.9	0.0	2.3	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
Dynamin_N	PF00350.18	gi|146302964|ref|YP_001190280.1|	-	0.081	12.7	0.2	0.68	9.7	0.0	2.1	2	0	0	2	2	2	0	Dynamin	family
Ras	PF00071.17	gi|146302964|ref|YP_001190280.1|	-	0.093	12.1	0.3	1.7	8.0	0.0	2.2	2	0	0	2	2	2	0	Ras	family
Thymidylate_kin	PF02223.12	gi|146302964|ref|YP_001190280.1|	-	0.11	11.8	0.0	8.3	5.7	0.0	2.5	2	0	0	2	2	2	0	Thymidylate	kinase
UPF0126	PF03458.8	gi|146302965|ref|YP_001190281.1|	-	5e-47	157.4	11.4	1.1e-24	85.8	2.4	2.3	2	0	0	2	2	2	2	UPF0126	domain
PolyA_pol	PF01743.15	gi|146302965|ref|YP_001190281.1|	-	0.057	13.6	0.0	4.6	7.4	0.0	2.2	2	0	0	2	2	2	0	Poly	A	polymerase	head	domain
Fer4	PF00037.22	gi|146302966|ref|YP_001190282.1|	-	3.4e-13	48.5	12.7	3.8e-07	29.4	4.1	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146302966|ref|YP_001190282.1|	-	2.9e-11	43.4	6.2	3.9e-11	43.0	4.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146302966|ref|YP_001190282.1|	-	2e-09	36.9	12.8	4.5e-06	26.3	3.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146302966|ref|YP_001190282.1|	-	2.2e-08	33.7	18.2	1.9e-06	27.5	5.0	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146302966|ref|YP_001190282.1|	-	2.9e-08	33.9	8.5	6.7e-08	32.7	6.0	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146302966|ref|YP_001190282.1|	-	8.3e-08	32.1	9.6	6.7e-06	26.0	4.5	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146302966|ref|YP_001190282.1|	-	1.4e-07	31.2	4.9	1.8e-07	30.8	3.4	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146302966|ref|YP_001190282.1|	-	3.4e-06	26.9	8.1	0.019	15.2	2.3	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146302966|ref|YP_001190282.1|	-	4.6e-06	26.2	10.7	0.01	15.7	2.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146302966|ref|YP_001190282.1|	-	1.1e-05	25.5	14.4	0.0082	16.6	4.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|146302966|ref|YP_001190282.1|	-	8e-05	22.9	0.6	0.25	11.7	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|146302966|ref|YP_001190282.1|	-	0.00035	20.9	9.5	0.17	12.2	2.7	2.4	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|146302966|ref|YP_001190282.1|	-	0.00069	20.3	7.8	0.0073	17.0	1.6	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|146302966|ref|YP_001190282.1|	-	0.00069	20.1	8.9	0.19	12.2	3.1	2.4	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|146302966|ref|YP_001190282.1|	-	0.0024	18.2	10.2	0.0094	16.3	2.1	2.2	1	1	1	2	2	2	1	4Fe-4S	dicluster	domain
Glyco_tranf_2_3	PF13641.1	gi|146302968|ref|YP_001190284.1|	-	8.6e-43	146.7	0.0	1.1e-42	146.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|146302968|ref|YP_001190284.1|	-	3.4e-30	105.1	2.8	6e-30	104.3	2.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.21	gi|146302968|ref|YP_001190284.1|	-	3.9e-28	98.2	0.0	6.2e-28	97.5	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.4	gi|146302968|ref|YP_001190284.1|	-	4.1e-13	49.0	0.0	1.4e-12	47.2	0.0	1.7	1	1	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_transf_21	PF13506.1	gi|146302968|ref|YP_001190284.1|	-	5.2e-13	48.6	0.0	8.7e-13	47.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_4	PF13704.1	gi|146302968|ref|YP_001190284.1|	-	0.057	13.7	0.0	0.093	13.0	0.0	1.3	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Phos_pyr_kin	PF08543.7	gi|146302969|ref|YP_001190285.1|	-	1.8e-79	266.4	0.0	2.3e-79	266.0	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
PfkB	PF00294.19	gi|146302969|ref|YP_001190285.1|	-	1.1e-08	34.6	0.0	1.8e-08	33.9	0.0	1.4	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.12	gi|146302969|ref|YP_001190285.1|	-	2.2e-07	30.4	0.0	3.6e-07	29.7	0.0	1.5	1	1	0	1	1	1	1	Carbohydrate	kinase
PfkB	PF00294.19	gi|146302970|ref|YP_001190286.1|	-	2.6e-54	184.4	1.7	7.2e-54	182.9	1.2	1.6	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Phos_pyr_kin	PF08543.7	gi|146302970|ref|YP_001190286.1|	-	5.2e-12	45.4	0.0	7.8e-12	44.9	0.0	1.2	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Carb_kinase	PF01256.12	gi|146302970|ref|YP_001190286.1|	-	8.7e-05	21.9	0.0	0.00014	21.2	0.0	1.2	1	0	0	1	1	1	1	Carbohydrate	kinase
Lactamase_B_2	PF12706.2	gi|146302971|ref|YP_001190287.1|	-	3.8e-22	78.7	0.0	5.3e-22	78.3	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146302971|ref|YP_001190287.1|	-	1.8e-12	47.3	0.1	2.5e-12	46.8	0.1	1.2	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|146302971|ref|YP_001190287.1|	-	1.6e-05	24.6	0.0	3.2e-05	23.6	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
GATase_6	PF13522.1	gi|146302972|ref|YP_001190288.1|	-	7.3e-06	25.9	0.0	3.3e-05	23.8	0.0	2.0	1	1	1	2	2	2	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|146302972|ref|YP_001190288.1|	-	0.00043	19.0	0.0	0.00051	18.8	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
OrfB_Zn_ribbon	PF07282.6	gi|146302973|ref|YP_001190289.1|	-	1.1e-19	69.8	0.0	1.9e-19	69.0	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DZR	PF12773.2	gi|146302973|ref|YP_001190289.1|	-	0.0003	20.5	0.3	0.00047	19.9	0.2	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|146302973|ref|YP_001190289.1|	-	0.00079	18.5	1.6	0.38	10.0	0.2	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TMP-TENI	PF02581.12	gi|146302973|ref|YP_001190289.1|	-	0.00087	18.4	0.0	0.0015	17.6	0.0	1.3	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
OrfB_IS605	PF01385.14	gi|146302973|ref|YP_001190289.1|	-	0.0015	17.9	0.0	0.0031	16.9	0.0	1.5	2	0	0	2	2	2	1	Probable	transposase
TF_Zn_Ribbon	PF08271.7	gi|146302973|ref|YP_001190289.1|	-	0.0029	16.8	0.3	1.5	8.2	0.0	2.7	3	0	0	3	3	3	2	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|146302973|ref|YP_001190289.1|	-	0.005	16.2	2.0	0.59	9.7	0.2	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
C1_3	PF07649.7	gi|146302973|ref|YP_001190289.1|	-	0.11	12.6	1.2	0.24	11.4	0.8	1.7	1	0	0	1	1	1	0	C1-like	domain
PhnA_Zn_Ribbon	PF08274.7	gi|146302973|ref|YP_001190289.1|	-	0.12	12.1	1.8	0.66	9.8	0.0	2.2	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
UPF0547	PF10571.4	gi|146302973|ref|YP_001190289.1|	-	0.14	11.8	1.6	13	5.5	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Serine_rich	PF08824.5	gi|146302973|ref|YP_001190289.1|	-	0.17	11.6	0.0	0.24	11.1	0.0	1.2	1	0	0	1	1	1	0	Serine	rich	protein	interaction	domain
zf-NADH-PPase	PF09297.6	gi|146302973|ref|YP_001190289.1|	-	0.18	11.3	1.4	12	5.5	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|146302973|ref|YP_001190289.1|	-	5.5	6.8	5.8	3	7.7	0.5	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Peptidase_M24	PF00557.19	gi|146302974|ref|YP_001190290.1|	-	1.5e-47	161.8	0.1	1.8e-47	161.5	0.0	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|146302974|ref|YP_001190290.1|	-	5.2e-14	52.8	0.0	8.1e-14	52.2	0.0	1.3	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
Aminotran_1_2	PF00155.16	gi|146302975|ref|YP_001190291.1|	-	6.3e-26	91.1	0.0	7.1e-26	90.9	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.2	gi|146302975|ref|YP_001190291.1|	-	1.8e-05	23.5	0.0	0.00024	19.7	0.0	2.0	1	1	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
OCD_Mu_crystall	PF02423.10	gi|146302976|ref|YP_001190292.1|	-	2.4e-33	115.2	0.0	3.8e-33	114.5	0.0	1.4	1	1	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|146302976|ref|YP_001190292.1|	-	0.00014	21.9	0.1	0.00022	21.3	0.1	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|146302976|ref|YP_001190292.1|	-	0.0032	16.6	0.0	0.0061	15.7	0.0	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
FBPase_glpX	PF03320.8	gi|146302976|ref|YP_001190292.1|	-	0.0051	15.5	0.2	1.4	7.5	0.0	2.2	1	1	1	2	2	2	2	Bacterial	fructose-1,6-bisphosphatase,	glpX-encoded
GFO_IDH_MocA	PF01408.17	gi|146302976|ref|YP_001190292.1|	-	0.014	15.9	0.0	0.042	14.3	0.0	1.7	1	1	1	2	2	2	0	Oxidoreductase	family,	NAD-binding	Rossmann	fold
F420_oxidored	PF03807.12	gi|146302976|ref|YP_001190292.1|	-	0.025	15.0	0.4	0.1	13.0	0.1	2.0	1	1	1	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DapB_N	PF01113.15	gi|146302976|ref|YP_001190292.1|	-	0.089	12.7	0.2	0.3	11.0	0.0	1.8	1	1	1	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
HTH_24	PF13412.1	gi|146302977|ref|YP_001190293.1|	-	8.8e-06	25.0	0.0	8.8e-06	25.0	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
FeoC	PF09012.5	gi|146302977|ref|YP_001190293.1|	-	6.1e-05	22.6	0.0	0.00011	21.8	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_11	PF08279.7	gi|146302977|ref|YP_001190293.1|	-	6.5e-05	22.5	0.5	0.00049	19.6	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.17	gi|146302977|ref|YP_001190293.1|	-	7.3e-05	22.3	0.0	0.00014	21.5	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|146302977|ref|YP_001190293.1|	-	0.0001	22.5	0.1	0.00068	19.9	0.0	2.0	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|146302977|ref|YP_001190293.1|	-	0.00019	21.0	0.0	0.0003	20.3	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.7	gi|146302977|ref|YP_001190293.1|	-	0.00032	20.1	0.2	0.0011	18.5	0.0	2.0	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
Med9	PF07544.8	gi|146302977|ref|YP_001190293.1|	-	0.00042	19.9	2.3	0.021	14.5	1.2	2.2	2	0	0	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Fe_dep_repress	PF01325.14	gi|146302977|ref|YP_001190293.1|	-	0.0013	18.5	0.3	0.0027	17.5	0.0	1.7	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|146302977|ref|YP_001190293.1|	-	0.0056	16.3	0.2	0.018	14.7	0.0	1.8	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|146302977|ref|YP_001190293.1|	-	0.0087	15.6	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
DUF4423	PF14394.1	gi|146302977|ref|YP_001190293.1|	-	0.014	14.9	0.7	0.38	10.2	0.0	2.1	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4423)
TMF_DNA_bd	PF12329.3	gi|146302977|ref|YP_001190293.1|	-	0.014	15.1	2.4	0.021	14.6	1.7	1.3	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
DUF2103	PF09876.4	gi|146302977|ref|YP_001190293.1|	-	0.021	14.5	0.2	0.91	9.3	0.1	2.1	1	1	1	2	2	2	0	Predicted	metal-binding	protein	(DUF2103)
FlaC_arch	PF05377.6	gi|146302977|ref|YP_001190293.1|	-	0.022	14.6	0.7	0.047	13.5	0.5	1.6	1	0	0	1	1	1	0	Flagella	accessory	protein	C	(FlaC)
DivIC	PF04977.10	gi|146302977|ref|YP_001190293.1|	-	0.024	14.1	0.7	0.11	11.9	0.3	2.0	2	0	0	2	2	2	0	Septum	formation	initiator
EAP30	PF04157.11	gi|146302977|ref|YP_001190293.1|	-	0.027	13.6	0.1	1.2	8.2	0.0	2.0	2	0	0	2	2	2	0	EAP30/Vps36	family
HTH_36	PF13730.1	gi|146302977|ref|YP_001190293.1|	-	0.031	14.3	0.1	0.07	13.2	0.0	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|146302977|ref|YP_001190293.1|	-	0.032	14.3	0.2	0.22	11.6	0.0	2.0	1	1	1	2	2	2	0	Transcriptional	regulator
Prefoldin_2	PF01920.15	gi|146302977|ref|YP_001190293.1|	-	0.033	13.9	1.2	0.053	13.2	0.8	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
FlxA	PF14282.1	gi|146302977|ref|YP_001190293.1|	-	0.038	13.9	0.3	0.051	13.5	0.2	1.2	1	0	0	1	1	1	0	FlxA-like	protein
Spc24	PF08286.6	gi|146302977|ref|YP_001190293.1|	-	0.056	13.1	0.5	0.056	13.1	0.3	1.5	2	0	0	2	2	1	0	Spc24	subunit	of	Ndc80
THOC7	PF05615.8	gi|146302977|ref|YP_001190293.1|	-	0.057	13.6	0.6	0.083	13.1	0.4	1.3	1	0	0	1	1	1	0	Tho	complex	subunit	7
APC2	PF08672.6	gi|146302977|ref|YP_001190293.1|	-	0.057	13.6	0.1	4.8	7.5	0.0	2.2	2	0	0	2	2	2	0	Anaphase	promoting	complex	(APC)	subunit	2
NTR2	PF15458.1	gi|146302977|ref|YP_001190293.1|	-	0.064	12.4	1.1	0.082	12.1	0.8	1.2	1	0	0	1	1	1	0	Nineteen	complex-related	protein	2
HTH_5	PF01022.15	gi|146302977|ref|YP_001190293.1|	-	0.09	12.4	0.0	0.25	11.0	0.0	1.8	2	0	0	2	2	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4200	PF13863.1	gi|146302977|ref|YP_001190293.1|	-	0.095	12.6	2.2	0.12	12.3	1.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4200)
HTH_17	PF12728.2	gi|146302977|ref|YP_001190293.1|	-	0.1	12.9	0.1	0.39	11.0	0.0	2.0	2	1	0	2	2	2	0	Helix-turn-helix	domain
Prefoldin	PF02996.12	gi|146302977|ref|YP_001190293.1|	-	0.1	12.2	0.6	0.16	11.6	0.4	1.3	1	0	0	1	1	1	0	Prefoldin	subunit
DUF1319	PF07028.6	gi|146302977|ref|YP_001190293.1|	-	0.11	12.7	2.4	0.13	12.4	1.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1319)
HTH_Tnp_ISL3	PF13542.1	gi|146302977|ref|YP_001190293.1|	-	0.12	11.5	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF3573	PF12097.3	gi|146302977|ref|YP_001190293.1|	-	0.13	10.8	0.0	0.14	10.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
Fib_alpha	PF08702.5	gi|146302977|ref|YP_001190293.1|	-	0.14	12.2	1.4	0.15	12.1	1.0	1.3	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
SpoOE-like	PF09388.5	gi|146302977|ref|YP_001190293.1|	-	0.58	9.7	3.3	1.1	8.8	2.3	1.5	1	0	0	1	1	1	0	Spo0E	like	sporulation	regulatory	protein
DUF1947	PF09183.5	gi|146302978|ref|YP_001190294.1|	-	2.4e-30	104.0	0.1	3.2e-30	103.6	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1947)
PUA	PF01472.15	gi|146302978|ref|YP_001190294.1|	-	1.9e-12	46.7	0.1	3e-12	46.0	0.1	1.4	1	0	0	1	1	1	1	PUA	domain
Ald_Xan_dh_C2	PF02738.13	gi|146302979|ref|YP_001190295.1|	-	6.7e-129	430.6	0.0	8.1e-129	430.4	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146302979|ref|YP_001190295.1|	-	8.8e-16	57.9	0.1	3.8e-07	30.1	0.0	2.5	1	1	1	2	2	2	2	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Peptidase_M48	PF01435.13	gi|146302980|ref|YP_001190296.1|	-	2.9e-16	59.7	4.0	8.2e-15	54.9	2.7	2.6	1	1	0	1	1	1	1	Peptidase	family	M48
DUF4157	PF13699.1	gi|146302980|ref|YP_001190296.1|	-	0.014	15.4	0.0	0.021	14.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4157)
Reprolysin_4	PF13583.1	gi|146302980|ref|YP_001190296.1|	-	0.02	14.4	0.0	0.037	13.5	0.0	1.4	2	0	0	2	2	2	0	Metallo-peptidase	family	M12B	Reprolysin-like
Reprolysin_5	PF13688.1	gi|146302980|ref|YP_001190296.1|	-	0.086	12.7	0.0	0.11	12.3	0.0	1.1	1	0	0	1	1	1	0	Metallo-peptidase	family	M12
DUF420	PF04238.7	gi|146302980|ref|YP_001190296.1|	-	0.13	12.1	0.1	0.13	12.1	0.1	1.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF420)
DUF955	PF06114.8	gi|146302980|ref|YP_001190296.1|	-	0.48	10.1	2.0	2	8.1	1.4	1.9	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF955)
ADH_N	PF08240.7	gi|146302981|ref|YP_001190297.1|	-	4.4e-25	87.5	0.8	8.3e-25	86.6	0.5	1.4	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146302981|ref|YP_001190297.1|	-	1.9e-20	72.7	0.0	4.3e-20	71.5	0.0	1.6	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146302981|ref|YP_001190297.1|	-	0.00027	21.8	0.1	0.00047	21.0	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
FAD_binding_3	PF01494.14	gi|146302981|ref|YP_001190297.1|	-	0.0074	15.3	0.1	0.015	14.3	0.0	1.5	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|146302981|ref|YP_001190297.1|	-	0.016	15.2	0.0	0.027	14.5	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|146302981|ref|YP_001190297.1|	-	0.057	13.5	0.1	0.13	12.3	0.0	1.5	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Ldh_1_N	PF00056.18	gi|146302981|ref|YP_001190297.1|	-	0.063	13.1	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
Fer4_17	PF13534.1	gi|146302981|ref|YP_001190297.1|	-	0.065	13.5	2.2	0.08	13.2	0.2	2.0	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146302981|ref|YP_001190297.1|	-	0.15	12.1	0.4	0.15	12.1	0.2	1.9	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
CobD_Cbib	PF03186.8	gi|146302982|ref|YP_001190298.1|	-	1.6e-79	267.0	0.3	1.8e-79	266.8	0.2	1.0	1	0	0	1	1	1	1	CobD/Cbib	protein
CobS	PF02654.10	gi|146302983|ref|YP_001190299.1|	-	1.2e-29	103.6	11.4	1.8e-29	103.0	7.9	1.2	1	0	0	1	1	1	1	Cobalamin-5-phosphate	synthase
GATase_3	PF07685.9	gi|146302984|ref|YP_001190300.1|	-	2.6e-26	92.1	0.0	5.3e-26	91.0	0.0	1.5	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
AAA_26	PF13500.1	gi|146302984|ref|YP_001190300.1|	-	6.4e-10	38.9	0.0	1.2e-06	28.2	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
CbiA	PF01656.18	gi|146302984|ref|YP_001190300.1|	-	4.4e-09	36.0	0.0	7.1e-09	35.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
GATase	PF00117.23	gi|146302984|ref|YP_001190300.1|	-	6.8e-05	22.4	0.0	0.0001	21.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
SNO	PF01174.14	gi|146302984|ref|YP_001190300.1|	-	0.0066	16.1	0.0	0.012	15.2	0.0	1.5	1	1	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_S51	PF03575.12	gi|146302984|ref|YP_001190300.1|	-	0.049	13.3	0.0	0.097	12.4	0.0	1.4	1	0	0	1	1	1	0	Peptidase	family	S51
GMP_synt_C	PF00958.17	gi|146302985|ref|YP_001190301.1|	-	5.9e-24	83.6	0.5	2.4e-23	81.6	0.1	2.1	2	0	0	2	2	2	1	GMP	synthase	C	terminal	domain
NAD_synthase	PF02540.12	gi|146302985|ref|YP_001190301.1|	-	3.9e-12	45.5	0.0	2.4e-11	43.0	0.0	2.0	1	1	0	1	1	1	1	NAD	synthase
ATP_bind_3	PF01171.15	gi|146302985|ref|YP_001190301.1|	-	5.6e-07	29.2	0.0	8.8e-07	28.5	0.0	1.2	1	0	0	1	1	1	1	PP-loop	family
QueC	PF06508.8	gi|146302985|ref|YP_001190301.1|	-	7.1e-05	22.1	0.0	0.03	13.5	0.0	2.2	1	1	0	2	2	2	2	Queuosine	biosynthesis	protein	QueC
tRNA_Me_trans	PF03054.11	gi|146302985|ref|YP_001190301.1|	-	0.00012	20.8	0.0	0.015	13.8	0.0	2.4	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|146302985|ref|YP_001190301.1|	-	0.00024	20.6	0.0	0.00041	19.9	0.0	1.4	1	0	0	1	1	1	1	Asparagine	synthase
ThiI	PF02568.9	gi|146302985|ref|YP_001190301.1|	-	0.0021	17.5	0.0	0.0092	15.4	0.0	2.0	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
DUF758	PF05527.6	gi|146302985|ref|YP_001190301.1|	-	0.09	12.3	0.2	0.59	9.7	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF758)
DUF2392	PF10288.4	gi|146302985|ref|YP_001190301.1|	-	0.1	12.9	0.0	0.3	11.4	0.0	1.9	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2392)
TPP_enzyme_M	PF00205.17	gi|146302986|ref|YP_001190302.1|	-	1.2e-32	112.5	0.0	7.5e-32	109.9	0.0	2.1	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_N	PF02776.13	gi|146302986|ref|YP_001190302.1|	-	1.7e-23	82.9	0.0	3.3e-23	82.0	0.0	1.4	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
PNTB	PF02233.11	gi|146302986|ref|YP_001190302.1|	-	0.078	11.7	0.0	0.15	10.8	0.0	1.4	1	0	0	1	1	1	0	NAD(P)	transhydrogenase	beta	subunit
DUF2204	PF09970.4	gi|146302987|ref|YP_001190303.1|	-	1.2e-66	223.6	3.4	1.4e-66	223.4	2.4	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase	of	unknown	function	(DUF2204)
Ribosomal_L40e	PF01020.12	gi|146302988|ref|YP_001190304.1|	-	3.3e-07	29.7	5.0	4e-07	29.5	3.4	1.2	1	0	0	1	1	1	1	Ribosomal	L40e	family
zf-ribbon_3	PF13248.1	gi|146302988|ref|YP_001190304.1|	-	0.001	18.2	0.5	0.0014	17.7	0.3	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146302988|ref|YP_001190304.1|	-	0.005	16.2	0.8	0.0074	15.7	0.6	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|146302988|ref|YP_001190304.1|	-	0.0067	16.2	1.1	0.0089	15.8	0.7	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
HypA	PF01155.14	gi|146302988|ref|YP_001190304.1|	-	0.0068	16.0	0.6	0.0081	15.8	0.4	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DnaJ_CXXCXGXG	PF00684.14	gi|146302988|ref|YP_001190304.1|	-	0.024	14.7	1.5	0.027	14.5	1.1	1.1	1	0	0	1	1	1	0	DnaJ	central	domain
zf-tcix	PF14952.1	gi|146302988|ref|YP_001190304.1|	-	0.064	12.5	4.6	0.087	12.1	3.2	1.3	1	0	0	1	1	1	0	Putative	treble-clef,	zinc-finger,	Zn-binding
DUF35_N	PF12172.3	gi|146302988|ref|YP_001190304.1|	-	0.065	13.1	2.2	0.18	11.7	1.6	1.7	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-C2H2_3	PF13878.1	gi|146302988|ref|YP_001190304.1|	-	0.2	11.2	3.8	0.77	9.3	0.1	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Spt4	PF06093.8	gi|146302988|ref|YP_001190304.1|	-	0.21	11.4	2.2	0.5	10.2	1.4	1.4	1	1	1	2	2	2	0	Spt4/RpoE2	zinc	finger
TF_Zn_Ribbon	PF08271.7	gi|146302988|ref|YP_001190304.1|	-	0.28	10.5	1.6	8.2	5.8	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-RanBP	PF00641.13	gi|146302988|ref|YP_001190304.1|	-	0.29	10.2	4.5	0.42	9.7	3.1	1.3	1	0	0	1	1	1	0	Zn-finger	in	Ran	binding	protein	and	others
Haem_bd	PF14376.1	gi|146302988|ref|YP_001190304.1|	-	0.35	10.5	2.5	0.44	10.2	1.7	1.4	1	1	0	1	1	1	0	Haem-binding	domain
Cytochrome_C7	PF14522.1	gi|146302988|ref|YP_001190304.1|	-	0.38	10.4	3.9	1.8	8.2	2.6	1.9	1	1	0	1	1	1	0	Cytochrome	c7
DUF1924	PF09086.6	gi|146302988|ref|YP_001190304.1|	-	0.61	10.1	2.9	1.8	8.6	0.2	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1924)
zf-CCHC	PF00098.18	gi|146302988|ref|YP_001190304.1|	-	0.77	9.7	4.1	4.3	7.4	0.2	2.2	2	0	0	2	2	2	0	Zinc	knuckle
Zn-ribbon_8	PF09723.5	gi|146302988|ref|YP_001190304.1|	-	0.97	9.4	3.4	5.6	6.9	2.3	2.0	1	1	1	2	2	2	0	Zinc	ribbon	domain
DUF2082	PF09855.4	gi|146302988|ref|YP_001190304.1|	-	1.1	9.2	3.7	4.8	7.1	0.4	2.0	1	1	1	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Mu-like_Com	PF10122.4	gi|146302988|ref|YP_001190304.1|	-	1.8	7.6	9.3	30	3.7	6.5	2.1	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
DNA_RNApol_7kD	PF03604.8	gi|146302988|ref|YP_001190304.1|	-	8.8	5.9	10.1	0.52	9.8	3.3	1.8	2	1	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
KH_5	PF13184.1	gi|146302989|ref|YP_001190305.1|	-	2.3e-08	33.7	0.9	4.1e-08	32.9	0.1	1.9	2	1	0	2	2	2	1	NusA-like	KH	domain
tRNA-synt_2	PF00152.15	gi|146302990|ref|YP_001190306.1|	-	1.5e-92	309.9	0.3	1.9e-92	309.6	0.2	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|146302990|ref|YP_001190306.1|	-	5.2e-14	51.8	0.1	9e-14	51.0	0.1	1.4	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
DUF2856	PF11043.3	gi|146302990|ref|YP_001190306.1|	-	0.13	12.3	0.4	2.2	8.4	0.0	2.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2856)
TruD	PF01142.13	gi|146302991|ref|YP_001190307.1|	-	4.7e-46	157.1	0.0	5.7e-40	137.1	0.0	2.0	1	1	1	2	2	2	2	tRNA	pseudouridine	synthase	D	(TruD)
PTH2	PF01981.11	gi|146302992|ref|YP_001190308.1|	-	3.6e-45	152.3	0.0	4e-45	152.2	0.0	1.0	1	0	0	1	1	1	1	Peptidyl-tRNA	hydrolase	PTH2
Flu_B_NS1	PF02942.9	gi|146302992|ref|YP_001190308.1|	-	0.12	11.3	0.0	0.15	10.9	0.0	1.1	1	0	0	1	1	1	0	Influenza	B	non-structural	protein	(NS1)
DUF1610	PF07754.6	gi|146302993|ref|YP_001190309.1|	-	1e-15	57.4	11.2	2.5e-08	33.8	2.7	2.1	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
OrfB_Zn_ribbon	PF07282.6	gi|146302993|ref|YP_001190309.1|	-	3e-07	29.9	4.5	1.2e-05	24.8	0.6	2.1	1	1	1	2	2	2	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|146302993|ref|YP_001190309.1|	-	2.7e-05	23.2	12.5	0.042	13.0	0.5	3.2	2	1	1	3	3	3	3	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146302993|ref|YP_001190309.1|	-	5.6e-05	22.4	7.4	0.26	10.8	0.3	3.3	3	0	0	3	3	3	2	zinc-ribbon	domain
DZR	PF12773.2	gi|146302993|ref|YP_001190309.1|	-	0.00028	20.6	8.3	0.045	13.5	6.1	2.5	1	1	0	1	1	1	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|146302993|ref|YP_001190309.1|	-	0.00041	19.6	9.6	0.014	14.7	4.3	2.7	2	1	0	2	2	2	1	TFIIB	zinc-binding
Nudix_N_2	PF14803.1	gi|146302993|ref|YP_001190309.1|	-	0.00061	19.4	3.9	2.5	7.8	0.0	3.3	3	0	0	3	3	3	0	Nudix	N-terminal
zf-H2C2_2	PF13465.1	gi|146302993|ref|YP_001190309.1|	-	0.0016	18.6	8.1	0.095	13.0	0.2	3.1	2	1	1	3	3	3	1	Zinc-finger	double	domain
zf-C2HC5	PF06221.8	gi|146302993|ref|YP_001190309.1|	-	0.0018	18.0	9.0	0.0038	16.9	1.6	2.2	1	1	1	2	2	2	2	Putative	zinc	finger	motif,	C2HC5-type
zf-ISL3	PF14690.1	gi|146302993|ref|YP_001190309.1|	-	0.0022	17.9	10.0	0.24	11.4	0.1	3.1	2	1	1	3	3	3	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zinc_ribbon_5	PF13719.1	gi|146302993|ref|YP_001190309.1|	-	0.0024	17.4	4.5	1.8	8.2	0.0	3.1	3	0	0	3	3	3	1	zinc-ribbon	domain
NinF	PF05810.7	gi|146302993|ref|YP_001190309.1|	-	0.0067	16.2	0.3	0.0067	16.2	0.2	1.4	2	0	0	2	2	1	1	NinF	protein
zf-NADH-PPase	PF09297.6	gi|146302993|ref|YP_001190309.1|	-	0.0077	15.7	1.1	0.0077	15.7	0.8	2.3	2	0	0	2	2	2	1	NADH	pyrophosphatase	zinc	ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146302993|ref|YP_001190309.1|	-	0.01	15.7	7.4	0.75	9.8	1.7	3.0	2	1	1	3	3	3	0	Zinc	ribbon	domain
DUF35_N	PF12172.3	gi|146302993|ref|YP_001190309.1|	-	0.011	15.5	5.5	0.11	12.3	0.4	3.0	2	1	1	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
ADK_lid	PF05191.9	gi|146302993|ref|YP_001190309.1|	-	0.011	15.3	9.6	1.8	8.2	0.1	3.3	2	1	0	2	2	2	0	Adenylate	kinase,	active	site	lid
PolC_DP2	PF03833.8	gi|146302993|ref|YP_001190309.1|	-	0.013	13.2	2.3	0.014	13.1	1.6	1.0	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
DUF1451	PF07295.6	gi|146302993|ref|YP_001190309.1|	-	0.015	15.0	0.4	0.015	15.0	0.3	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1451)
IBR	PF01485.16	gi|146302993|ref|YP_001190309.1|	-	0.019	14.8	6.5	0.03	14.2	0.7	2.1	1	1	1	2	2	2	0	IBR	domain
HypA	PF01155.14	gi|146302993|ref|YP_001190309.1|	-	0.019	14.6	1.0	0.019	14.6	0.7	2.0	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
RNA_POL_M_15KD	PF02150.11	gi|146302993|ref|YP_001190309.1|	-	0.019	14.6	3.6	0.2	11.3	0.5	2.6	2	1	1	3	3	3	0	RNA	polymerases	M/15	Kd	subunit
Zn_Tnp_IS1595	PF12760.2	gi|146302993|ref|YP_001190309.1|	-	0.026	14.3	12.8	0.16	11.7	4.2	2.9	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-MYND	PF01753.13	gi|146302993|ref|YP_001190309.1|	-	0.031	14.1	3.8	0.28	11.0	3.0	2.0	1	1	0	1	1	1	0	MYND	finger
zinc_ribbon_4	PF13717.1	gi|146302993|ref|YP_001190309.1|	-	0.034	13.8	8.4	2.1	8.0	0.1	3.1	3	0	0	3	3	3	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|146302993|ref|YP_001190309.1|	-	0.036	13.7	4.8	7	6.3	0.2	3.1	3	0	0	3	3	3	0	Transcription	factor	S-II	(TFIIS)
Auto_anti-p27	PF06677.7	gi|146302993|ref|YP_001190309.1|	-	0.044	13.5	9.3	1.3	8.8	2.3	2.5	2	1	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-HIT	PF04438.11	gi|146302993|ref|YP_001190309.1|	-	0.046	13.3	12.4	0.37	10.4	0.2	3.1	2	1	0	2	2	2	0	HIT	zinc	finger
NOB1_Zn_bind	PF08772.6	gi|146302993|ref|YP_001190309.1|	-	0.049	13.4	1.0	0.049	13.4	0.7	2.1	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-CHY	PF05495.7	gi|146302993|ref|YP_001190309.1|	-	0.054	13.6	4.3	0.58	10.3	3.0	2.0	1	1	0	1	1	1	0	CHY	zinc	finger
DUF164	PF02591.10	gi|146302993|ref|YP_001190309.1|	-	0.055	13.3	7.7	3	7.7	0.1	3.1	2	1	1	3	3	3	0	Putative	zinc	ribbon	domain
PhnA_Zn_Ribbon	PF08274.7	gi|146302993|ref|YP_001190309.1|	-	0.061	13.1	8.3	0.48	10.2	0.1	3.0	3	0	0	3	3	3	0	PhnA	Zinc-Ribbon
zf-IS66	PF13005.2	gi|146302993|ref|YP_001190309.1|	-	0.062	13.2	8.3	3.3	7.7	0.2	3.2	3	0	0	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
C1_1	PF00130.17	gi|146302993|ref|YP_001190309.1|	-	0.07	12.8	0.8	0.07	12.8	0.5	2.0	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
Ribosomal_L37ae	PF01780.14	gi|146302993|ref|YP_001190309.1|	-	0.085	12.7	3.1	0.45	10.4	0.2	2.1	1	1	1	2	2	2	0	Ribosomal	L37ae	protein	family
RRN7	PF11781.3	gi|146302993|ref|YP_001190309.1|	-	0.088	12.3	4.7	2.5	7.6	0.1	3.2	3	0	0	3	3	3	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
zf-CCHC	PF00098.18	gi|146302993|ref|YP_001190309.1|	-	0.088	12.7	9.8	4.1	7.5	0.0	3.3	3	0	0	3	3	3	0	Zinc	knuckle
A2L_zn_ribbon	PF08792.5	gi|146302993|ref|YP_001190309.1|	-	0.098	12.1	12.0	1.3	8.6	0.7	3.0	2	2	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF4503	PF14951.1	gi|146302993|ref|YP_001190309.1|	-	0.099	10.7	1.5	0.11	10.6	1.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4503)
Sgf11	PF08209.6	gi|146302993|ref|YP_001190309.1|	-	0.1	11.9	8.1	1.1	8.6	0.1	3.1	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
zf-C3HC4_4	PF15227.1	gi|146302993|ref|YP_001190309.1|	-	0.11	12.4	6.1	0.51	10.2	0.7	2.2	2	0	0	2	2	2	0	zinc	finger	of	C3HC4-type,	RING
UPF0547	PF10571.4	gi|146302993|ref|YP_001190309.1|	-	0.15	11.8	10.7	1.8	8.3	0.6	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
Rubredoxin	PF00301.15	gi|146302993|ref|YP_001190309.1|	-	0.15	11.9	8.1	15	5.5	0.1	3.1	2	1	0	2	2	2	0	Rubredoxin
DUF723	PF05265.8	gi|146302993|ref|YP_001190309.1|	-	0.17	11.7	2.2	0.3	10.9	1.5	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF723)
zf-Mss51	PF13824.1	gi|146302993|ref|YP_001190309.1|	-	0.19	11.5	10.3	0.99	9.3	0.4	2.8	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TerY-C	PF15616.1	gi|146302993|ref|YP_001190309.1|	-	0.21	11.5	7.7	0.13	12.1	0.9	2.0	1	1	1	2	2	2	0	TerY-C	metal	binding	domain
C1_3	PF07649.7	gi|146302993|ref|YP_001190309.1|	-	0.25	11.3	8.9	0.75	9.8	0.5	2.8	1	1	1	2	2	2	0	C1-like	domain
zf-C2H2	PF00096.21	gi|146302993|ref|YP_001190309.1|	-	0.39	11.1	12.3	4.9	7.6	0.5	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
Prok-RING_1	PF14446.1	gi|146302993|ref|YP_001190309.1|	-	0.4	10.4	7.3	0.11	12.1	1.0	2.2	1	1	1	2	2	2	0	Prokaryotic	RING	finger	family	1
Elf1	PF05129.8	gi|146302993|ref|YP_001190309.1|	-	0.44	10.2	5.5	0.14	11.8	1.2	1.9	1	1	1	2	2	2	0	Transcription	elongation	factor	Elf1	like
RecR	PF02132.10	gi|146302993|ref|YP_001190309.1|	-	0.44	10.0	4.2	19	4.7	0.2	3.1	3	0	0	3	3	3	0	RecR	protein
DNA_RNApol_7kD	PF03604.8	gi|146302993|ref|YP_001190309.1|	-	0.51	9.8	6.9	1.3	8.5	1.1	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
C1_2	PF03107.11	gi|146302993|ref|YP_001190309.1|	-	0.53	10.4	5.7	9.5	6.4	0.6	2.3	1	1	1	2	2	2	0	C1	domain
zf-UBP	PF02148.14	gi|146302993|ref|YP_001190309.1|	-	0.53	10.4	2.7	21	5.3	1.9	2.3	1	1	0	1	1	1	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
Ribosomal_L32p	PF01783.18	gi|146302993|ref|YP_001190309.1|	-	0.54	10.4	6.1	5.7	7.2	1.1	3.0	1	1	1	2	2	2	0	Ribosomal	L32p	protein	family
DUF2296	PF10058.4	gi|146302993|ref|YP_001190309.1|	-	0.54	10.0	10.0	2.3	8.0	0.5	3.0	2	1	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Rpr2	PF04032.11	gi|146302993|ref|YP_001190309.1|	-	0.61	9.9	5.4	3.5	7.5	3.7	2.3	1	1	0	1	1	1	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zf-C4_Topoisom	PF01396.14	gi|146302993|ref|YP_001190309.1|	-	0.63	9.5	9.4	6.1	6.4	0.1	3.1	2	1	1	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
YhfH	PF14149.1	gi|146302993|ref|YP_001190309.1|	-	0.67	9.7	7.3	8.9	6.1	0.2	3.1	3	0	0	3	3	3	0	YhfH-like	protein
PHD	PF00628.24	gi|146302993|ref|YP_001190309.1|	-	0.83	9.3	7.5	21	4.9	5.2	2.4	1	1	0	1	1	1	0	PHD-finger
Tnp_zf-ribbon_2	PF13842.1	gi|146302993|ref|YP_001190309.1|	-	1.2	9.5	6.3	17	5.8	0.2	2.7	2	1	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zf-RING_3	PF14369.1	gi|146302993|ref|YP_001190309.1|	-	1.6	8.8	9.6	24	5.0	0.2	3.1	2	1	0	2	2	2	0	zinc-finger
zf-AN1	PF01428.11	gi|146302993|ref|YP_001190309.1|	-	1.7	8.5	8.4	15	5.5	0.2	2.9	2	1	1	3	3	3	0	AN1-like	Zinc	finger
DUF329	PF03884.9	gi|146302993|ref|YP_001190309.1|	-	2.1	7.9	7.5	8.4	6.0	0.2	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF329)
zf-LITAF-like	PF10601.4	gi|146302993|ref|YP_001190309.1|	-	2.5	8.0	6.7	34	4.3	1.6	2.9	2	1	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
zf-TFIIB	PF13453.1	gi|146302993|ref|YP_001190309.1|	-	2.9	7.1	13.0	4.3	6.6	2.6	3.0	1	1	2	3	3	3	0	Transcription	factor	zinc-finger
DUF1272	PF06906.6	gi|146302993|ref|YP_001190309.1|	-	3.7	7.4	8.9	68	3.4	6.2	2.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
zf-tcix	PF14952.1	gi|146302993|ref|YP_001190309.1|	-	4.3	6.7	13.2	2	7.7	0.3	3.0	1	1	2	3	3	3	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-dskA_traR	PF01258.12	gi|146302993|ref|YP_001190309.1|	-	5.7	6.7	7.3	15	5.3	0.1	3.2	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
DUF3039	PF11238.3	gi|146302993|ref|YP_001190309.1|	-	5.7	6.4	6.9	3.1	7.3	1.8	2.4	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3039)
Zn_Tnp_IS91	PF14319.1	gi|146302993|ref|YP_001190309.1|	-	5.8	6.4	6.1	27	4.3	4.4	1.7	1	1	0	1	1	1	0	Transposase	zinc-binding	domain
RNHCP	PF12647.2	gi|146302993|ref|YP_001190309.1|	-	6.8	6.5	6.6	1.5	8.7	1.0	2.0	1	1	0	2	2	2	0	RNHCP	domain
C1_4	PF07975.7	gi|146302993|ref|YP_001190309.1|	-	7.2	6.6	7.0	1.7e+02	2.2	4.8	2.2	1	1	0	1	1	1	0	TFIIH	C1-like	domain
zf-B_box	PF00643.19	gi|146302993|ref|YP_001190309.1|	-	7.9	6.4	8.2	2.6	8.0	1.1	2.6	1	1	1	2	2	2	0	B-box	zinc	finger
Lar_restr_allev	PF14354.1	gi|146302993|ref|YP_001190309.1|	-	9.4	6.6	10.1	3.4	8.0	3.1	2.2	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
EF1_GNE	PF00736.14	gi|146302994|ref|YP_001190310.1|	-	2.5e-22	78.3	0.2	2.7e-22	78.2	0.1	1.0	1	0	0	1	1	1	1	EF-1	guanine	nucleotide	exchange	domain
DUF2758	PF10957.3	gi|146302994|ref|YP_001190310.1|	-	0.15	11.8	0.1	0.31	10.8	0.0	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2758)
AAA	PF00004.24	gi|146302995|ref|YP_001190311.1|	-	4.1e-97	321.4	0.0	2.5e-48	163.5	0.0	2.8	3	0	0	3	3	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|146302995|ref|YP_001190311.1|	-	7.9e-32	109.0	3.3	4.9e-31	106.5	1.3	2.6	2	0	0	2	2	2	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|146302995|ref|YP_001190311.1|	-	2.5e-15	56.1	0.0	2.8e-07	29.8	0.0	2.9	2	1	1	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|146302995|ref|YP_001190311.1|	-	2.6e-13	50.2	0.0	2.3e-06	27.6	0.0	2.7	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.1	gi|146302995|ref|YP_001190311.1|	-	3.2e-13	49.9	0.9	0.00019	21.5	0.1	4.4	2	2	1	3	3	3	2	AAA	domain
CDC48_2	PF02933.12	gi|146302995|ref|YP_001190311.1|	-	4.7e-12	45.3	1.3	4.7e-12	45.3	0.9	1.9	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_5	PF07728.9	gi|146302995|ref|YP_001190311.1|	-	1.1e-11	44.5	1.8	0.00023	20.8	0.1	4.4	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|146302995|ref|YP_001190311.1|	-	6.5e-11	42.5	0.0	0.00086	19.3	0.0	3.5	2	1	0	2	2	2	2	AAA	ATPase	domain
AAA_17	PF13207.1	gi|146302995|ref|YP_001190311.1|	-	7e-11	43.0	0.1	0.00013	22.7	0.0	3.2	2	1	0	2	2	2	2	AAA	domain
AAA_33	PF13671.1	gi|146302995|ref|YP_001190311.1|	-	1.3e-10	41.3	0.0	0.00035	20.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|146302995|ref|YP_001190311.1|	-	5e-10	39.3	0.0	0.00029	20.7	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|146302995|ref|YP_001190311.1|	-	6.5e-10	38.2	0.0	9.4e-05	21.2	0.0	2.8	2	0	0	2	2	2	2	TIP49	C-terminus
IstB_IS21	PF01695.12	gi|146302995|ref|YP_001190311.1|	-	3.7e-09	36.2	0.3	0.002	17.5	0.0	2.7	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
Zeta_toxin	PF06414.7	gi|146302995|ref|YP_001190311.1|	-	4.3e-09	35.7	0.0	0.0028	16.7	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
Arch_ATPase	PF01637.13	gi|146302995|ref|YP_001190311.1|	-	5.7e-08	32.7	0.4	0.0055	16.4	0.1	4.3	2	2	1	3	3	3	1	Archaeal	ATPase
AAA_18	PF13238.1	gi|146302995|ref|YP_001190311.1|	-	6.3e-08	32.9	0.0	0.0079	16.4	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
AAA_28	PF13521.1	gi|146302995|ref|YP_001190311.1|	-	1.2e-07	31.8	0.0	0.015	15.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Mg_chelatase	PF01078.16	gi|146302995|ref|YP_001190311.1|	-	3.4e-07	29.6	0.6	0.0067	15.6	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|146302995|ref|YP_001190311.1|	-	6.8e-07	29.4	0.0	0.014	15.5	0.0	2.7	2	0	0	2	2	2	2	RNA	helicase
AAA_19	PF13245.1	gi|146302995|ref|YP_001190311.1|	-	1.9e-06	27.5	0.8	0.042	13.6	0.2	3.0	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_25	PF13481.1	gi|146302995|ref|YP_001190311.1|	-	5.6e-06	25.8	6.7	0.037	13.4	0.2	4.0	2	2	1	3	3	3	2	AAA	domain
AAA_24	PF13479.1	gi|146302995|ref|YP_001190311.1|	-	1.5e-05	24.7	1.1	0.077	12.5	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|146302995|ref|YP_001190311.1|	-	1.9e-05	24.2	0.1	0.55	9.6	0.0	3.5	2	1	0	2	2	2	2	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|146302995|ref|YP_001190311.1|	-	2.9e-05	23.6	0.0	0.33	10.5	0.0	3.0	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|146302995|ref|YP_001190311.1|	-	3e-05	23.7	0.3	0.45	10.1	0.1	3.3	3	0	0	3	3	3	2	NACHT	domain
DUF815	PF05673.8	gi|146302995|ref|YP_001190311.1|	-	5.4e-05	22.2	0.0	0.47	9.3	0.0	3.7	2	1	0	3	3	3	2	Protein	of	unknown	function	(DUF815)
Sigma54_activ_2	PF14532.1	gi|146302995|ref|YP_001190311.1|	-	6.3e-05	23.0	0.0	0.23	11.4	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
ABC_tran	PF00005.22	gi|146302995|ref|YP_001190311.1|	-	7.5e-05	23.0	0.0	0.35	11.1	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
NB-ARC	PF00931.17	gi|146302995|ref|YP_001190311.1|	-	0.00011	21.1	0.1	0.041	12.7	0.0	2.4	2	0	0	2	2	2	1	NB-ARC	domain
Bac_DnaA	PF00308.13	gi|146302995|ref|YP_001190311.1|	-	0.00022	20.9	0.0	0.047	13.3	0.0	3.0	2	1	0	2	2	2	1	Bacterial	dnaA	protein
NTPase_1	PF03266.10	gi|146302995|ref|YP_001190311.1|	-	0.00061	19.5	3.8	0.83	9.3	0.0	4.4	3	2	1	4	4	4	1	NTPase
PhoH	PF02562.11	gi|146302995|ref|YP_001190311.1|	-	0.0007	18.8	0.7	0.29	10.3	0.2	2.6	2	0	0	2	2	2	1	PhoH-like	protein
Parvo_NS1	PF01057.12	gi|146302995|ref|YP_001190311.1|	-	0.00075	18.4	0.1	0.88	8.3	0.0	2.4	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
KaiC	PF06745.8	gi|146302995|ref|YP_001190311.1|	-	0.00095	18.3	0.3	1.3	8.1	0.0	3.5	2	1	1	3	3	3	1	KaiC
AFG1_ATPase	PF03969.11	gi|146302995|ref|YP_001190311.1|	-	0.0016	17.3	0.0	1	8.1	0.0	2.7	3	0	0	3	3	2	1	AFG1-like	ATPase
ATP-synt_ab	PF00006.20	gi|146302995|ref|YP_001190311.1|	-	0.0018	17.7	0.0	0.32	10.4	0.0	2.7	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
UFD1	PF03152.9	gi|146302995|ref|YP_001190311.1|	-	0.0022	17.1	0.0	0.0084	15.2	0.0	1.9	1	1	1	2	2	2	1	Ubiquitin	fusion	degradation	protein	UFD1
Guanylate_kin	PF00625.16	gi|146302995|ref|YP_001190311.1|	-	0.0024	17.3	0.1	10	5.5	0.0	3.9	3	1	1	4	4	4	0	Guanylate	kinase
UPF0079	PF02367.12	gi|146302995|ref|YP_001190311.1|	-	0.0031	17.1	0.1	2.4	7.7	0.0	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
PduV-EutP	PF10662.4	gi|146302995|ref|YP_001190311.1|	-	0.0088	15.5	0.0	2.9	7.3	0.0	2.6	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_10	PF12846.2	gi|146302995|ref|YP_001190311.1|	-	0.0096	15.3	1.3	3.9	6.8	0.0	3.1	2	1	0	3	3	3	0	AAA-like	domain
Vps4_C	PF09336.5	gi|146302995|ref|YP_001190311.1|	-	0.01	15.6	1.0	0.12	12.2	0.1	2.8	2	0	0	2	2	2	0	Vps4	C	terminal	oligomerisation	domain
SKI	PF01202.17	gi|146302995|ref|YP_001190311.1|	-	0.012	15.4	0.1	6.9	6.5	0.0	2.7	3	0	0	3	3	2	0	Shikimate	kinase
AAA_11	PF13086.1	gi|146302995|ref|YP_001190311.1|	-	0.039	13.5	0.1	2.9	7.4	0.0	2.6	2	1	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|146302995|ref|YP_001190311.1|	-	0.046	12.6	0.0	9	5.1	0.0	2.4	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Viral_helicase1	PF01443.13	gi|146302995|ref|YP_001190311.1|	-	0.054	12.9	0.0	1.8	8.0	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
IPT	PF01745.11	gi|146302995|ref|YP_001190311.1|	-	0.064	12.4	0.1	0.88	8.6	0.0	2.2	2	0	0	2	2	2	0	Isopentenyl	transferase
AAA_30	PF13604.1	gi|146302995|ref|YP_001190311.1|	-	0.074	12.6	0.2	7.1	6.1	0.1	2.6	2	0	0	2	2	2	0	AAA	domain
ResIII	PF04851.10	gi|146302995|ref|YP_001190311.1|	-	0.092	12.5	0.0	6.2	6.6	0.0	2.5	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
KTI12	PF08433.5	gi|146302995|ref|YP_001190311.1|	-	0.096	11.8	0.0	14	4.7	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Miro	PF08477.8	gi|146302995|ref|YP_001190311.1|	-	0.11	12.9	0.0	11	6.5	0.0	2.8	2	0	0	2	2	2	0	Miro-like	protein
XPG_I	PF00867.13	gi|146302997|ref|YP_001190313.1|	-	6.3e-27	93.4	0.4	1.9e-26	91.9	0.0	2.0	2	0	0	2	2	2	1	XPG	I-region
XPG_N	PF00752.12	gi|146302997|ref|YP_001190313.1|	-	1.6e-11	44.3	0.0	3.6e-11	43.2	0.0	1.6	1	0	0	1	1	1	1	XPG	N-terminal	domain
5_3_exonuc	PF01367.15	gi|146302997|ref|YP_001190313.1|	-	3.5e-07	30.3	4.9	1.1e-06	28.8	0.0	2.7	3	0	0	3	3	3	1	5'-3'	exonuclease,	C-terminal	SAM	fold
HHH_2	PF12826.2	gi|146302997|ref|YP_001190313.1|	-	0.014	15.2	0.0	0.05	13.4	0.0	1.9	2	0	0	2	2	2	0	Helix-hairpin-helix	motif
NAD_binding_7	PF13241.1	gi|146302998|ref|YP_001190314.1|	-	5.4e-26	90.8	0.0	9.3e-26	90.0	0.0	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|146302998|ref|YP_001190314.1|	-	3.7e-06	26.9	0.0	8.2e-06	25.8	0.0	1.6	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_10	PF13460.1	gi|146302998|ref|YP_001190314.1|	-	0.00016	21.6	0.0	0.00028	20.9	0.0	1.3	1	0	0	1	1	1	1	NADH(P)-binding
Shikimate_DH	PF01488.15	gi|146302998|ref|YP_001190314.1|	-	0.00058	19.9	0.1	0.0015	18.6	0.1	1.9	1	1	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.22	gi|146302998|ref|YP_001190314.1|	-	0.00064	20.0	0.1	0.0015	18.8	0.1	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|146302998|ref|YP_001190314.1|	-	0.0038	17.6	0.0	0.0095	16.3	0.0	1.7	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Saccharop_dh	PF03435.13	gi|146302998|ref|YP_001190314.1|	-	0.0061	15.5	0.0	0.0071	15.3	0.0	1.1	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|146302998|ref|YP_001190314.1|	-	0.016	14.7	0.2	0.095	12.2	0.2	2.0	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
UDPG_MGDP_dh_N	PF03721.9	gi|146302998|ref|YP_001190314.1|	-	0.032	13.6	0.2	0.13	11.5	0.1	1.9	1	1	1	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ThiF	PF00899.16	gi|146302998|ref|YP_001190314.1|	-	0.046	13.5	2.8	0.59	9.9	0.1	2.4	1	1	1	2	2	2	0	ThiF	family
3HCDH_N	PF02737.13	gi|146302998|ref|YP_001190314.1|	-	0.067	12.8	0.0	0.14	11.8	0.0	1.7	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_2	PF03446.10	gi|146302998|ref|YP_001190314.1|	-	0.075	12.8	0.0	0.15	11.8	0.0	1.5	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
DAO	PF01266.19	gi|146302998|ref|YP_001190314.1|	-	0.084	11.7	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
GlutR_N	PF05201.10	gi|146302999|ref|YP_001190315.1|	-	2.8e-32	111.3	0.0	5.1e-32	110.5	0.0	1.4	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	N-terminal	domain
GlutR_dimer	PF00745.15	gi|146302999|ref|YP_001190315.1|	-	9.8e-21	73.6	0.3	2.2e-20	72.4	0.2	1.6	1	0	0	1	1	1	1	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
Shikimate_DH	PF01488.15	gi|146302999|ref|YP_001190315.1|	-	2.6e-16	59.9	0.0	2.8e-15	56.6	0.0	2.5	2	0	0	2	2	2	1	Shikimate	/	quinate	5-dehydrogenase
F420_oxidored	PF03807.12	gi|146302999|ref|YP_001190315.1|	-	2e-05	24.9	0.0	8e-05	22.9	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
ELFV_dehydrog	PF00208.16	gi|146302999|ref|YP_001190315.1|	-	0.0056	16.2	0.1	0.021	14.4	0.1	2.0	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NAD_binding_2	PF03446.10	gi|146302999|ref|YP_001190315.1|	-	0.0085	15.9	0.0	0.038	13.8	0.0	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|146302999|ref|YP_001190315.1|	-	0.019	14.0	0.0	0.036	13.2	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146302999|ref|YP_001190315.1|	-	0.02	14.6	0.1	0.05	13.3	0.0	1.7	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|146302999|ref|YP_001190315.1|	-	0.025	14.0	0.1	0.062	12.7	0.1	1.7	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
THF_DHG_CYH_C	PF02882.14	gi|146302999|ref|YP_001190315.1|	-	0.05	12.6	0.0	2.4	7.1	0.0	2.2	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Pyr_redox	PF00070.22	gi|146302999|ref|YP_001190315.1|	-	0.071	13.5	0.1	0.29	11.5	0.1	2.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Ldh_1_N	PF00056.18	gi|146302999|ref|YP_001190315.1|	-	0.087	12.6	0.0	0.21	11.4	0.0	1.6	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|146302999|ref|YP_001190315.1|	-	0.1	11.9	0.0	0.19	11.0	0.0	1.5	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
ALAD	PF00490.16	gi|146303000|ref|YP_001190316.1|	-	2.9e-139	463.5	0.1	3.2e-139	463.3	0.0	1.0	1	0	0	1	1	1	1	Delta-aminolevulinic	acid	dehydratase
Mob_Pre	PF01076.14	gi|146303000|ref|YP_001190316.1|	-	0.027	14.0	0.0	0.063	12.8	0.0	1.5	2	0	0	2	2	2	0	Plasmid	recombination	enzyme
PEP_mutase	PF13714.1	gi|146303000|ref|YP_001190316.1|	-	0.086	12.0	0.3	1.5	7.9	0.0	2.6	2	1	0	3	3	3	0	Phosphoenolpyruvate	phosphomutase
Aminotran_3	PF00202.16	gi|146303001|ref|YP_001190317.1|	-	1.4e-69	234.5	0.0	1.8e-69	234.2	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|146303001|ref|YP_001190317.1|	-	0.00043	19.3	0.0	0.00071	18.6	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Parvo_NS1	PF01057.12	gi|146303001|ref|YP_001190317.1|	-	0.18	10.6	0.0	0.29	9.9	0.0	1.2	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Porphobil_deam	PF01379.15	gi|146303002|ref|YP_001190318.1|	-	4.7e-60	202.1	0.0	6.9e-60	201.6	0.0	1.2	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	dipyromethane	cofactor	binding	domain
Porphobil_deamC	PF03900.10	gi|146303002|ref|YP_001190318.1|	-	0.0001	22.3	0.0	0.00027	20.9	0.0	1.8	1	0	0	1	1	1	1	Porphobilinogen	deaminase,	C-terminal	domain
B12-binding	PF02310.14	gi|146303002|ref|YP_001190318.1|	-	0.0024	17.7	0.0	0.22	11.3	0.0	2.7	2	2	0	2	2	2	1	B12	binding	domain
HEM4	PF02602.10	gi|146303003|ref|YP_001190319.1|	-	1.3e-22	80.1	0.0	1.6e-22	79.8	0.0	1.1	1	0	0	1	1	1	1	Uroporphyrinogen-III	synthase	HemD
HHH_5	PF14520.1	gi|146303003|ref|YP_001190319.1|	-	0.1	12.8	0.0	0.39	10.9	0.0	2.1	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
Methyltransf_8	PF05148.10	gi|146303003|ref|YP_001190319.1|	-	0.11	12.1	0.1	0.18	11.4	0.1	1.4	1	0	0	1	1	1	0	Hypothetical	methyltransferase
RRM_2	PF04059.7	gi|146303004|ref|YP_001190320.1|	-	0.081	12.9	0.3	0.11	12.4	0.2	1.3	1	1	0	1	1	1	0	RNA	recognition	motif	2
DUF1125	PF06563.6	gi|146303004|ref|YP_001190320.1|	-	0.21	11.3	2.1	0.36	10.5	0.0	2.3	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1125)
Phosphodiest	PF01663.17	gi|146303005|ref|YP_001190321.1|	-	6.4e-38	131.0	0.0	1.5e-37	129.8	0.0	1.6	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|146303005|ref|YP_001190321.1|	-	1.8e-05	24.4	0.0	0.0051	16.5	0.0	2.6	2	1	0	2	2	2	2	PglZ	domain
Sulfatase	PF00884.18	gi|146303005|ref|YP_001190321.1|	-	0.017	14.3	0.0	0.064	12.4	0.0	1.9	2	0	0	2	2	2	0	Sulfatase
Fer2_BFD	PF04324.10	gi|146303006|ref|YP_001190322.1|	-	0.0066	16.4	0.1	0.013	15.5	0.1	1.5	1	0	0	1	1	1	1	BFD-like	[2Fe-2S]	binding	domain
Pyr_redox_3	PF13738.1	gi|146303006|ref|YP_001190322.1|	-	0.015	15.3	0.0	0.2	11.6	0.0	2.2	1	1	1	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146303007|ref|YP_001190323.1|	-	1.1e-57	195.6	0.0	1.2e-57	195.4	0.0	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|146303007|ref|YP_001190323.1|	-	0.00018	21.4	1.1	0.0054	16.6	0.7	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146303007|ref|YP_001190323.1|	-	0.00023	20.1	3.6	0.0045	15.8	0.1	2.1	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|146303007|ref|YP_001190323.1|	-	0.00084	18.4	1.5	0.0033	16.5	0.0	2.5	3	0	0	3	3	3	1	Thi4	family
NAD_binding_8	PF13450.1	gi|146303007|ref|YP_001190323.1|	-	0.0027	17.7	0.2	0.0063	16.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|146303007|ref|YP_001190323.1|	-	0.0033	16.5	0.7	0.0048	15.9	0.5	1.2	1	0	0	1	1	1	1	FAD	binding	domain
ApbA	PF02558.11	gi|146303007|ref|YP_001190323.1|	-	0.01	15.2	0.0	0.027	13.9	0.0	1.7	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Pyr_redox_3	PF13738.1	gi|146303007|ref|YP_001190323.1|	-	0.011	15.8	0.0	0.13	12.3	0.0	2.1	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303007|ref|YP_001190323.1|	-	0.028	14.8	2.5	0.034	14.5	0.0	2.3	2	1	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|146303007|ref|YP_001190323.1|	-	0.061	13.0	0.0	0.13	11.9	0.0	1.6	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Shikimate_DH	PF01488.15	gi|146303007|ref|YP_001190323.1|	-	0.13	12.3	0.8	0.23	11.5	0.6	1.4	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
FAD_binding_2	PF00890.19	gi|146303007|ref|YP_001190323.1|	-	0.15	10.9	1.9	0.73	8.6	1.3	2.0	1	1	0	1	1	1	0	FAD	binding	domain
Amino_oxidase	PF01593.19	gi|146303007|ref|YP_001190323.1|	-	0.17	10.9	0.0	4.1	6.3	0.0	2.1	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
NAD_binding_9	PF13454.1	gi|146303007|ref|YP_001190323.1|	-	0.25	11.1	0.8	9.5	5.9	0.1	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
PGM_PMM_I	PF02878.11	gi|146303008|ref|YP_001190324.1|	-	3.6e-41	139.8	0.0	8.4e-41	138.6	0.0	1.7	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
PGM_PMM_II	PF02879.11	gi|146303008|ref|YP_001190324.1|	-	9.6e-21	74.0	0.0	2.2e-20	72.9	0.0	1.6	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	II
PGM_PMM_III	PF02880.11	gi|146303008|ref|YP_001190324.1|	-	4.7e-18	65.2	0.0	8.3e-18	64.4	0.0	1.4	1	0	0	1	1	1	1	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	III
PGM_PMM_IV	PF00408.15	gi|146303008|ref|YP_001190324.1|	-	2.3e-13	49.9	0.1	1.9e-12	47.0	0.0	2.3	2	0	0	2	2	2	1	Phosphoglucomutase/phosphomannomutase,	C-terminal	domain
Trm112p	PF03966.11	gi|146303009|ref|YP_001190325.1|	-	6.6e-15	55.2	3.0	1.1e-14	54.5	2.1	1.4	1	0	0	1	1	1	1	Trm112p-like	protein
Prok-RING_1	PF14446.1	gi|146303009|ref|YP_001190325.1|	-	0.0027	17.3	2.3	0.91	9.3	0.3	2.3	2	0	0	2	2	2	2	Prokaryotic	RING	finger	family	1
zf-DNL	PF05180.7	gi|146303009|ref|YP_001190325.1|	-	0.16	11.7	0.5	19	5.0	0.0	2.6	2	1	0	2	2	2	0	DNL	zinc	finger
zf-RING_4	PF14570.1	gi|146303009|ref|YP_001190325.1|	-	0.48	10.0	4.6	3.2	7.4	1.5	2.4	2	0	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-RING_5	PF14634.1	gi|146303009|ref|YP_001190325.1|	-	0.66	9.7	6.5	1.1	8.9	1.7	2.4	2	0	0	2	2	2	0	zinc-RING	finger	domain
zf-ribbon_3	PF13248.1	gi|146303009|ref|YP_001190325.1|	-	1.2	8.4	5.9	2.8	7.2	1.4	2.5	3	0	0	3	3	3	0	zinc-ribbon	domain
PHD	PF00628.24	gi|146303009|ref|YP_001190325.1|	-	2.7	7.7	7.2	1.4	8.6	0.4	2.4	2	1	0	2	2	2	0	PHD-finger
DUF2153	PF09921.4	gi|146303010|ref|YP_001190326.1|	-	3.4e-57	191.5	6.2	3.9e-57	191.3	4.3	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2153)
DinB	PF05163.7	gi|146303010|ref|YP_001190326.1|	-	0.041	13.6	0.3	0.047	13.4	0.2	1.1	1	0	0	1	1	1	0	DinB	family
AATF-Che1	PF13339.1	gi|146303010|ref|YP_001190326.1|	-	0.084	13.0	2.0	0.26	11.4	0.3	2.0	1	1	1	2	2	2	0	Apoptosis	antagonizing	transcription	factor
zf-C4H2	PF10146.4	gi|146303010|ref|YP_001190326.1|	-	0.097	12.6	0.5	0.12	12.4	0.3	1.1	1	0	0	1	1	1	0	Zinc	finger-containing	protein
DUF3818	PF12825.2	gi|146303010|ref|YP_001190326.1|	-	0.12	11.0	2.9	0.15	10.7	2.0	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	in	PX-proteins	(DUF3818)
zf-CpG_bind_C	PF12269.3	gi|146303010|ref|YP_001190326.1|	-	0.12	11.7	2.3	0.16	11.4	0.2	1.9	1	1	1	2	2	2	0	CpG	binding	protein	zinc	finger	C	terminal	domain
DUF1912	PF08930.5	gi|146303010|ref|YP_001190326.1|	-	0.18	11.8	2.4	7.3	6.7	0.4	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1912)
OMPdecase	PF00215.19	gi|146303012|ref|YP_001190328.1|	-	3.5e-22	78.9	1.9	4.9e-22	78.4	1.3	1.2	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
QRPTase_C	PF01729.14	gi|146303012|ref|YP_001190328.1|	-	3.4e-05	23.4	0.5	0.00011	21.8	0.1	1.9	1	1	1	2	2	2	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
CofC	PF01983.11	gi|146303012|ref|YP_001190328.1|	-	0.0015	17.4	1.4	0.0076	15.2	0.2	1.9	1	1	1	2	2	2	1	Guanylyl	transferase	CofC	like
NanE	PF04131.9	gi|146303012|ref|YP_001190328.1|	-	0.0021	17.0	0.3	0.0038	16.2	0.2	1.6	1	1	0	1	1	1	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
DUF436	PF04260.7	gi|146303012|ref|YP_001190328.1|	-	0.21	11.0	3.0	0.28	10.6	0.0	2.5	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF436)
CTP_synth_N	PF06418.9	gi|146303013|ref|YP_001190329.1|	-	2e-126	420.7	2.8	2.6e-126	420.3	1.9	1.1	1	0	0	1	1	1	1	CTP	synthase	N-terminus
GATase	PF00117.23	gi|146303013|ref|YP_001190329.1|	-	1.5e-50	171.3	0.0	5.2e-50	169.5	0.0	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146303013|ref|YP_001190329.1|	-	6.3e-10	38.8	0.0	1.3e-09	37.8	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
CbiA	PF01656.18	gi|146303013|ref|YP_001190329.1|	-	3.7e-08	33.0	0.0	5.5e-08	32.4	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.10	gi|146303013|ref|YP_001190329.1|	-	0.0016	17.5	2.0	0.0048	15.9	0.3	2.2	1	1	1	2	2	2	1	Anion-transporting	ATPase
ArgK	PF03308.11	gi|146303013|ref|YP_001190329.1|	-	0.052	12.3	1.6	0.18	10.5	0.2	2.1	2	0	0	2	2	2	0	ArgK	protein
HTH_5	PF01022.15	gi|146303014|ref|YP_001190330.1|	-	2.4e-11	43.1	1.1	3.7e-11	42.5	0.3	1.7	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|146303014|ref|YP_001190330.1|	-	4.5e-10	39.1	0.1	6.6e-10	38.6	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|146303014|ref|YP_001190330.1|	-	5.5e-08	32.3	0.1	9.2e-08	31.6	0.1	1.4	1	1	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|146303014|ref|YP_001190330.1|	-	1.2e-05	24.5	0.1	1.2e-05	24.5	0.1	1.6	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|146303014|ref|YP_001190330.1|	-	1.8e-05	24.3	0.1	2.9e-05	23.6	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|146303014|ref|YP_001190330.1|	-	2e-05	24.5	0.3	5e-05	23.2	0.1	1.7	1	1	1	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|146303014|ref|YP_001190330.1|	-	0.00034	20.8	0.1	0.00097	19.4	0.1	1.8	2	1	0	2	2	2	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|146303014|ref|YP_001190330.1|	-	0.00083	19.0	0.3	0.0015	18.2	0.2	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.5	gi|146303014|ref|YP_001190330.1|	-	0.00087	18.8	0.1	0.0013	18.2	0.1	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
ArsR	PF09824.4	gi|146303014|ref|YP_001190330.1|	-	0.0042	16.4	0.1	0.0069	15.7	0.1	1.3	1	1	0	1	1	1	1	ArsR	transcriptional	regulator
HTH_28	PF13518.1	gi|146303014|ref|YP_001190330.1|	-	0.0082	16.1	0.0	0.011	15.7	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|146303014|ref|YP_001190330.1|	-	0.016	14.6	0.1	0.033	13.6	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
DUF742	PF05331.6	gi|146303014|ref|YP_001190330.1|	-	0.016	14.7	0.1	0.021	14.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_1	PF00126.22	gi|146303014|ref|YP_001190330.1|	-	0.017	14.8	0.0	0.027	14.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
Fe_dep_repress	PF01325.14	gi|146303014|ref|YP_001190330.1|	-	0.02	14.7	0.1	0.037	13.9	0.1	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Adenosine_kin	PF04008.9	gi|146303014|ref|YP_001190330.1|	-	0.022	14.2	0.1	0.045	13.2	0.0	1.5	1	1	0	1	1	1	0	Adenosine	specific	kinase
HTH_29	PF13551.1	gi|146303014|ref|YP_001190330.1|	-	0.05	13.7	0.0	0.064	13.4	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_11	PF08279.7	gi|146303014|ref|YP_001190330.1|	-	0.081	12.5	0.1	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	HTH	domain
Prominin	PF05478.6	gi|146303014|ref|YP_001190330.1|	-	0.09	10.2	0.3	0.094	10.2	0.2	1.0	1	0	0	1	1	1	0	Prominin
HTH_23	PF13384.1	gi|146303014|ref|YP_001190330.1|	-	0.12	12.0	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
LSM	PF01423.17	gi|146303015|ref|YP_001190331.1|	-	7.6e-18	63.8	0.1	9.8e-18	63.4	0.0	1.1	1	0	0	1	1	1	1	LSM	domain
AdoMet_Synthase	PF01941.14	gi|146303016|ref|YP_001190332.1|	-	1.1e-169	564.1	3.8	1.3e-169	563.9	2.6	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	synthetase	(AdoMet	synthetase)
DUF460	PF04312.8	gi|146303017|ref|YP_001190333.1|	-	1.7e-49	166.9	0.1	3.8e-49	165.7	0.1	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF460)
HHH_3	PF12836.2	gi|146303017|ref|YP_001190333.1|	-	0.069	13.0	1.3	5.2	7.0	0.0	3.2	3	0	0	3	3	3	0	Helix-hairpin-helix	motif
Atg14	PF10186.4	gi|146303017|ref|YP_001190333.1|	-	0.21	10.4	13.0	0.35	9.7	9.0	1.3	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
RIO1	PF01163.17	gi|146303018|ref|YP_001190334.1|	-	1.4e-29	102.8	0.0	2.8e-29	101.8	0.0	1.5	1	0	0	1	1	1	1	RIO1	family
Pkinase	PF00069.20	gi|146303018|ref|YP_001190334.1|	-	1.1e-07	31.3	0.0	1.8e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	Protein	kinase	domain
APH	PF01636.18	gi|146303018|ref|YP_001190334.1|	-	4.6e-06	26.5	0.0	0.0011	18.8	0.0	2.2	2	0	0	2	2	2	2	Phosphotransferase	enzyme	family
Rio2_N	PF09202.6	gi|146303018|ref|YP_001190334.1|	-	6.6e-06	26.1	0.1	2e-05	24.5	0.1	1.7	1	0	0	1	1	1	1	Rio2,	N-terminal
Choline_kinase	PF01633.15	gi|146303018|ref|YP_001190334.1|	-	0.0036	16.9	0.0	1.9	7.9	0.0	2.3	1	1	1	2	2	2	2	Choline/ethanolamine	kinase
DUF4488	PF14869.1	gi|146303018|ref|YP_001190334.1|	-	0.012	15.1	0.2	0.027	14.0	0.0	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4488)
KTSC	PF13619.1	gi|146303018|ref|YP_001190334.1|	-	0.047	13.3	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	KTSC	domain
Kdo	PF06293.9	gi|146303018|ref|YP_001190334.1|	-	0.048	12.7	0.0	1	8.3	0.0	2.1	2	0	0	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
CbiA	PF01656.18	gi|146303019|ref|YP_001190335.1|	-	1.5e-11	44.0	0.2	3.1e-10	39.7	0.0	2.1	2	0	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146303019|ref|YP_001190335.1|	-	0.00012	22.0	0.2	0.00031	20.7	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303019|ref|YP_001190335.1|	-	0.00079	18.5	0.8	0.0016	17.5	0.5	1.5	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146303019|ref|YP_001190335.1|	-	0.0009	18.3	0.1	0.0015	17.6	0.1	1.3	1	0	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|146303019|ref|YP_001190335.1|	-	0.0064	15.8	0.1	0.012	14.9	0.1	1.4	1	0	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|146303019|ref|YP_001190335.1|	-	0.0079	15.4	0.0	0.023	13.8	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_17	PF13207.1	gi|146303019|ref|YP_001190335.1|	-	0.062	14.1	0.1	0.14	12.9	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|146303019|ref|YP_001190335.1|	-	0.073	12.4	0.1	0.49	9.7	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
SIS	PF01380.17	gi|146303021|ref|YP_001190337.1|	-	8.2e-17	61.0	0.0	1.6e-16	60.1	0.0	1.4	1	0	0	1	1	1	1	SIS	domain
SIS_2	PF13580.1	gi|146303021|ref|YP_001190337.1|	-	4.5e-11	42.6	0.5	2.8e-07	30.3	0.1	2.3	1	1	1	2	2	2	2	SIS	domain
DSPc	PF00782.15	gi|146303021|ref|YP_001190337.1|	-	0.1	12.2	0.0	0.15	11.6	0.0	1.4	1	0	0	1	1	1	0	Dual	specificity	phosphatase,	catalytic	domain
ApbA	PF02558.11	gi|146303021|ref|YP_001190337.1|	-	0.1	12.0	0.1	0.15	11.5	0.1	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
DeoC	PF01791.4	gi|146303022|ref|YP_001190338.1|	-	7.1e-28	97.4	0.0	8.6e-28	97.2	0.0	1.1	1	0	0	1	1	1	1	DeoC/LacD	family	aldolase
Polysacc_synt_3	PF13440.1	gi|146303023|ref|YP_001190339.1|	-	3.9e-08	33.0	29.7	3.9e-08	33.0	20.6	3.2	3	1	0	3	3	3	1	Polysaccharide	biosynthesis	protein
DUF1689	PF07954.6	gi|146303023|ref|YP_001190339.1|	-	0.011	15.5	0.0	0.032	14.0	0.0	1.8	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1689)
CBS	PF00571.23	gi|146303024|ref|YP_001190340.1|	-	4.1e-32	109.7	4.9	1.7e-16	59.7	0.5	2.0	2	0	0	2	2	2	2	CBS	domain
Ribosomal_L9_C	PF03948.9	gi|146303024|ref|YP_001190340.1|	-	0.0042	17.1	0.1	3.2	7.8	0.1	2.3	2	0	0	2	2	2	2	Ribosomal	protein	L9,	C-terminal	domain
IF3_N	PF05198.11	gi|146303024|ref|YP_001190340.1|	-	0.038	13.9	0.1	7.7	6.5	0.0	2.4	2	0	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
PRC	PF05239.11	gi|146303024|ref|YP_001190340.1|	-	0.051	13.4	0.9	6.4	6.7	0.0	2.5	2	0	0	2	2	2	0	PRC-barrel	domain
NTP_transferase	PF00483.18	gi|146303025|ref|YP_001190341.1|	-	2.6e-28	98.9	0.0	3.2e-28	98.7	0.0	1.0	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146303025|ref|YP_001190341.1|	-	2e-10	40.9	0.0	2.3e-10	40.7	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Epimerase	PF01370.16	gi|146303026|ref|YP_001190342.1|	-	2e-21	76.5	0.0	3.2e-21	75.8	0.0	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Polysacc_synt_2	PF02719.10	gi|146303026|ref|YP_001190342.1|	-	0.00062	18.7	0.0	0.0015	17.4	0.0	1.5	2	0	0	2	2	2	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.12	gi|146303026|ref|YP_001190342.1|	-	0.0047	15.8	0.0	0.019	13.8	0.0	1.9	1	1	0	1	1	1	1	RmlD	substrate	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|146303026|ref|YP_001190342.1|	-	0.077	12.3	0.0	0.15	11.4	0.0	1.4	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
adh_short	PF00106.20	gi|146303026|ref|YP_001190342.1|	-	0.17	11.7	0.0	0.34	10.8	0.0	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
Peptidase_M48	PF01435.13	gi|146303027|ref|YP_001190343.1|	-	4.8e-30	104.8	0.0	9.1e-30	103.8	0.0	1.4	1	1	0	1	1	1	1	Peptidase	family	M48
Peptidase_M56	PF05569.6	gi|146303027|ref|YP_001190343.1|	-	0.0012	17.8	0.1	0.011	14.7	0.0	2.1	2	0	0	2	2	2	1	BlaR1	peptidase	M56
DUF4013	PF13197.1	gi|146303027|ref|YP_001190343.1|	-	0.019	14.2	1.8	0.019	14.2	1.2	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4013)
G_glu_transpept	PF01019.16	gi|146303028|ref|YP_001190344.1|	-	1e-100	337.7	0.0	1.2e-100	337.3	0.0	1.1	1	0	0	1	1	1	1	Gamma-glutamyltranspeptidase
MazG	PF03819.12	gi|146303030|ref|YP_001190346.1|	-	3.3e-13	49.3	0.1	4.5e-13	48.9	0.1	1.2	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
PRA-PH	PF01503.12	gi|146303030|ref|YP_001190346.1|	-	0.00052	20.2	0.1	0.00056	20.1	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG-like	PF12643.2	gi|146303030|ref|YP_001190346.1|	-	0.00093	19.0	0.1	0.002	17.9	0.0	1.5	1	1	1	2	2	2	1	MazG-like	family
PG_binding_1	PF01471.13	gi|146303030|ref|YP_001190346.1|	-	0.037	13.9	0.0	0.087	12.8	0.0	1.7	2	0	0	2	2	2	0	Putative	peptidoglycan	binding	domain
Helicase_RecD	PF05127.9	gi|146303031|ref|YP_001190347.1|	-	4.5e-50	169.7	0.0	7.1e-50	169.0	0.0	1.3	1	0	0	1	1	1	1	Helicase
GNAT_acetyltr_2	PF13718.1	gi|146303031|ref|YP_001190347.1|	-	9e-42	142.6	0.0	9.9e-41	139.2	0.0	2.4	2	1	0	2	2	2	1	GNAT	acetyltransferase	2
DUF1726	PF08351.6	gi|146303031|ref|YP_001190347.1|	-	2e-23	81.8	0.1	1.4e-22	79.2	0.0	2.3	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_7	PF13508.1	gi|146303031|ref|YP_001190347.1|	-	2.3e-07	30.8	0.0	1.9e-06	27.9	0.0	2.5	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
tRNA_bind_2	PF13725.1	gi|146303031|ref|YP_001190347.1|	-	2.1e-05	24.5	0.0	5.2e-05	23.2	0.0	1.6	1	0	0	1	1	1	1	Possible	tRNA	binding	domain
Acetyltransf_1	PF00583.19	gi|146303031|ref|YP_001190347.1|	-	8.1e-05	22.5	0.0	0.00025	21.0	0.0	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
AAA_19	PF13245.1	gi|146303031|ref|YP_001190347.1|	-	0.00021	20.9	0.5	0.00066	19.3	0.3	1.8	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|146303031|ref|YP_001190347.1|	-	0.0012	18.5	0.0	0.0024	17.4	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
DEAD	PF00270.24	gi|146303031|ref|YP_001190347.1|	-	0.0038	16.7	0.0	0.013	14.9	0.0	2.0	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|146303031|ref|YP_001190347.1|	-	0.015	15.4	0.3	0.25	11.4	0.0	2.9	2	2	1	3	3	3	0	AAA	domain
Acetyltransf_9	PF13527.1	gi|146303031|ref|YP_001190347.1|	-	0.059	13.2	0.0	1.3	8.8	0.0	2.7	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
DUF2244	PF10003.4	gi|146303032|ref|YP_001190348.1|	-	1.9	7.8	12.3	0.2	10.9	0.4	2.8	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
Ni_hydr_CYTB	PF01292.15	gi|146303032|ref|YP_001190348.1|	-	8	5.7	24.0	56	3.0	0.4	3.5	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
AAA_31	PF13614.1	gi|146303033|ref|YP_001190349.1|	-	5.9e-05	23.0	0.1	0.00026	20.9	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
CbiA	PF01656.18	gi|146303033|ref|YP_001190349.1|	-	0.00094	18.6	1.0	0.002	17.5	0.5	1.9	2	1	0	2	2	2	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_25	PF13481.1	gi|146303033|ref|YP_001190349.1|	-	0.0045	16.4	0.1	0.07	12.5	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_26	PF13500.1	gi|146303033|ref|YP_001190349.1|	-	0.053	13.1	0.6	0.52	9.8	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
YhjQ	PF06564.7	gi|146303033|ref|YP_001190349.1|	-	0.095	12.0	0.1	0.23	10.8	0.0	1.6	2	0	0	2	2	2	0	YhjQ	protein
ArsA_ATPase	PF02374.10	gi|146303033|ref|YP_001190349.1|	-	0.11	11.4	0.4	0.22	10.5	0.2	1.5	1	0	0	1	1	1	0	Anion-transporting	ATPase
BLOC1_2	PF10046.4	gi|146303034|ref|YP_001190350.1|	-	0.0073	16.4	1.1	0.009	16.1	0.2	1.5	2	0	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF1843	PF08898.5	gi|146303034|ref|YP_001190350.1|	-	0.024	14.6	0.3	0.24	11.4	0.0	2.5	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF1843)
Borrelia_REV	PF03978.8	gi|146303034|ref|YP_001190350.1|	-	0.034	13.8	0.6	0.043	13.5	0.4	1.4	1	1	0	1	1	1	0	Borrelia	burgdorferi	REV	protein
PilJ	PF13675.1	gi|146303034|ref|YP_001190350.1|	-	0.068	13.4	0.0	0.11	12.8	0.0	1.3	1	1	0	1	1	1	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
Erp_C	PF06780.6	gi|146303034|ref|YP_001190350.1|	-	0.075	12.8	0.6	0.11	12.3	0.4	1.2	1	0	0	1	1	1	0	Erp	protein	C-terminus
CARD	PF00619.16	gi|146303034|ref|YP_001190350.1|	-	0.1	12.4	1.5	0.19	11.5	0.2	2.1	2	1	0	2	2	2	0	Caspase	recruitment	domain
AA_permease_2	PF13520.1	gi|146303035|ref|YP_001190351.1|	-	2.3e-14	52.7	48.9	6e-14	51.4	34.1	1.4	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303035|ref|YP_001190351.1|	-	5.7e-12	44.7	44.9	2.5e-11	42.6	31.1	1.9	1	1	0	1	1	1	1	Amino	acid	permease
DUF1689	PF07954.6	gi|146303035|ref|YP_001190351.1|	-	0.068	13.0	0.3	0.51	10.1	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1689)
ABC2_membrane	PF01061.19	gi|146303036|ref|YP_001190352.1|	-	3.9e-28	98.0	21.1	3.9e-28	98.0	14.6	1.5	2	0	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|146303036|ref|YP_001190352.1|	-	3.2e-16	59.3	20.1	3.2e-16	59.3	13.9	1.7	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|146303036|ref|YP_001190352.1|	-	1.5e-10	40.6	24.5	1.9e-10	40.2	17.0	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|146303036|ref|YP_001190352.1|	-	1.1e-05	24.5	14.8	1.5e-05	24.0	10.2	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|146303037|ref|YP_001190353.1|	-	5.7e-29	101.1	0.0	1e-28	100.3	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303037|ref|YP_001190353.1|	-	9.6e-13	48.7	2.2	4.5e-11	43.2	0.4	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|146303037|ref|YP_001190353.1|	-	0.00015	20.9	0.1	0.0069	15.4	0.0	2.3	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF4162	PF13732.1	gi|146303037|ref|YP_001190353.1|	-	0.00072	20.0	0.1	0.0022	18.4	0.1	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_23	PF13476.1	gi|146303037|ref|YP_001190353.1|	-	0.0011	19.3	0.7	0.0016	18.8	0.1	1.7	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|146303037|ref|YP_001190353.1|	-	0.0027	16.9	0.2	0.8	8.8	0.0	2.7	3	0	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|146303037|ref|YP_001190353.1|	-	0.004	17.2	0.2	0.018	15.1	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|146303037|ref|YP_001190353.1|	-	0.0094	15.4	0.1	0.021	14.3	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA	PF00004.24	gi|146303037|ref|YP_001190353.1|	-	0.014	15.5	2.2	0.29	11.3	1.5	2.4	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SbcCD_C	PF13558.1	gi|146303037|ref|YP_001190353.1|	-	0.038	13.8	0.0	0.11	12.3	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
MutS_V	PF00488.16	gi|146303037|ref|YP_001190353.1|	-	0.056	12.8	0.1	4.1	6.7	0.0	2.2	2	0	0	2	2	2	0	MutS	domain	V
UPF0079	PF02367.12	gi|146303037|ref|YP_001190353.1|	-	0.09	12.4	0.1	0.25	10.9	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
DUF258	PF03193.11	gi|146303037|ref|YP_001190353.1|	-	0.14	11.2	0.0	0.24	10.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Usp	PF00582.21	gi|146303038|ref|YP_001190354.1|	-	3.2e-27	95.4	0.5	3.6e-27	95.2	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
DXP_reductoisom	PF02670.11	gi|146303038|ref|YP_001190354.1|	-	0.021	15.3	0.1	0.025	15.1	0.0	1.2	1	0	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Phosphodiest	PF01663.17	gi|146303038|ref|YP_001190354.1|	-	0.03	13.6	0.0	0.032	13.5	0.0	1.1	1	0	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
MFS_1	PF07690.11	gi|146303039|ref|YP_001190355.1|	-	5.9e-14	51.5	39.6	5.9e-14	51.5	27.5	2.4	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
MFS_1	PF07690.11	gi|146303040|ref|YP_001190356.1|	-	3.8e-33	114.6	35.3	3.8e-33	114.6	24.5	1.5	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303040|ref|YP_001190356.1|	-	1.8e-23	82.8	36.7	1.5e-20	73.2	6.7	2.1	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
2-Hacid_dh_C	PF02826.14	gi|146303041|ref|YP_001190357.1|	-	9.3e-63	210.5	0.0	1.4e-62	210.0	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|146303041|ref|YP_001190357.1|	-	1.7e-33	114.8	0.0	1.9e-33	114.7	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.12	gi|146303041|ref|YP_001190357.1|	-	0.045	14.1	0.0	0.11	12.9	0.0	1.7	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Gp_dh_N	PF00044.19	gi|146303041|ref|YP_001190357.1|	-	0.12	12.3	0.7	0.2	11.6	0.5	1.5	1	1	0	1	1	1	0	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
GNAT_acetyltr_2	PF13718.1	gi|146303042|ref|YP_001190358.1|	-	9.3e-44	149.1	0.0	1.4e-42	145.3	0.0	2.3	1	1	0	1	1	1	1	GNAT	acetyltransferase	2
Helicase_RecD	PF05127.9	gi|146303042|ref|YP_001190358.1|	-	1.5e-41	141.9	0.0	2.7e-41	141.1	0.0	1.4	1	0	0	1	1	1	1	Helicase
DUF1726	PF08351.6	gi|146303042|ref|YP_001190358.1|	-	1.7e-22	78.8	0.0	5.1e-22	77.3	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1726)
Acetyltransf_1	PF00583.19	gi|146303042|ref|YP_001190358.1|	-	2.1e-07	30.8	0.4	5.8e-07	29.4	0.1	1.9	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|146303042|ref|YP_001190358.1|	-	1.9e-06	27.9	0.0	6.5e-06	26.2	0.0	1.9	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
tRNA_bind_2	PF13725.1	gi|146303042|ref|YP_001190358.1|	-	0.0001	22.3	0.2	0.00026	21.0	0.1	1.7	1	0	0	1	1	1	1	Possible	tRNA	binding	domain
AAA_19	PF13245.1	gi|146303042|ref|YP_001190358.1|	-	0.0015	18.2	0.0	0.08	12.7	0.0	2.6	2	0	0	2	2	2	1	Part	of	AAA	domain
Methyltransf_3	PF01596.12	gi|146303042|ref|YP_001190358.1|	-	0.012	14.6	0.0	0.028	13.4	0.0	1.6	1	0	0	1	1	1	0	O-methyltransferase
AAA_22	PF13401.1	gi|146303042|ref|YP_001190358.1|	-	0.038	14.1	0.1	0.29	11.2	0.1	2.7	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|146303042|ref|YP_001190358.1|	-	0.041	13.4	0.0	0.12	11.9	0.0	1.8	2	1	0	2	2	2	0	AAA	domain
MFS_1	PF07690.11	gi|146303043|ref|YP_001190359.1|	-	9.7e-26	90.3	43.4	1.6e-13	50.0	17.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
UNC-93	PF05978.11	gi|146303043|ref|YP_001190359.1|	-	2.4	7.6	19.3	0.038	13.4	4.7	2.8	2	1	0	2	2	2	0	Ion	channel	regulatory	protein	UNC-93
DUF1129	PF06570.6	gi|146303043|ref|YP_001190359.1|	-	4.7	6.4	25.2	1.5	8.1	5.1	3.3	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1129)
Peptidase_M56	PF05569.6	gi|146303045|ref|YP_001190361.1|	-	0.02	13.8	0.2	0.028	13.4	0.1	1.1	1	0	0	1	1	1	0	BlaR1	peptidase	M56
Mtp	PF03821.11	gi|146303046|ref|YP_001190362.1|	-	0.011	15.1	0.9	0.015	14.7	0.6	1.2	1	0	0	1	1	1	0	Golgi	4-transmembrane	spanning	transporter
CAAD	PF14159.1	gi|146303046|ref|YP_001190362.1|	-	0.16	11.5	2.0	0.28	10.8	1.4	1.3	1	0	0	1	1	1	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
DUF4234	PF14018.1	gi|146303047|ref|YP_001190363.1|	-	8	6.2	15.3	5.9	6.7	2.2	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4234)
DoxX	PF07681.7	gi|146303048|ref|YP_001190364.1|	-	7.5e-10	39.0	4.4	7.5e-10	39.0	3.1	1.6	2	0	0	2	2	2	1	DoxX
DoxX_2	PF13564.1	gi|146303048|ref|YP_001190364.1|	-	4.2e-07	29.8	2.8	0.00047	20.0	0.1	2.3	1	1	1	2	2	2	2	DoxX-like	family
DUF417	PF04224.7	gi|146303048|ref|YP_001190364.1|	-	0.13	11.5	5.3	0.19	11.0	3.6	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF417
4HBT	PF03061.17	gi|146303049|ref|YP_001190365.1|	-	1.7e-15	56.8	0.0	2.8e-15	56.2	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
DUF4442	PF14539.1	gi|146303049|ref|YP_001190365.1|	-	8.3e-05	22.5	0.0	0.0001	22.2	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
4HBT_3	PF13622.1	gi|146303049|ref|YP_001190365.1|	-	0.0046	16.7	0.0	0.0064	16.2	0.0	1.2	1	0	0	1	1	1	1	Thioesterase-like	superfamily
HxlR	PF01638.12	gi|146303050|ref|YP_001190366.1|	-	1.7e-21	75.6	0.1	2e-21	75.4	0.0	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_5	PF01022.15	gi|146303050|ref|YP_001190366.1|	-	1.8e-09	37.1	0.0	3.8e-09	36.0	0.0	1.5	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|146303050|ref|YP_001190366.1|	-	1.4e-05	24.8	0.0	1.8e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
RepL	PF05732.6	gi|146303050|ref|YP_001190366.1|	-	7.5e-05	21.9	0.0	0.00011	21.4	0.0	1.3	1	1	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
MarR_2	PF12802.2	gi|146303050|ref|YP_001190366.1|	-	0.00019	21.0	0.0	0.00027	20.5	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|146303050|ref|YP_001190366.1|	-	0.00047	20.1	0.0	0.00065	19.6	0.0	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|146303050|ref|YP_001190366.1|	-	0.00057	19.2	0.0	0.00086	18.6	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|146303050|ref|YP_001190366.1|	-	0.00072	19.3	0.0	0.0013	18.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|146303050|ref|YP_001190366.1|	-	0.0059	16.2	0.0	0.0086	15.7	0.0	1.3	1	0	0	1	1	1	1	MarR	family
PadR	PF03551.9	gi|146303050|ref|YP_001190366.1|	-	0.012	15.4	0.0	0.016	14.9	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|146303050|ref|YP_001190366.1|	-	0.092	12.4	0.0	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
zf-CDGSH	PF09360.5	gi|146303051|ref|YP_001190367.1|	-	1.1e-15	57.1	0.5	1.6e-15	56.6	0.4	1.3	1	0	0	1	1	1	1	Iron-binding	zinc	finger	CDGSH	type
AMP-binding	PF00501.23	gi|146303052|ref|YP_001190368.1|	-	2.4e-75	253.4	0.0	3.1e-75	253.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303052|ref|YP_001190368.1|	-	1.1e-15	58.2	1.0	2.6e-15	57.1	0.7	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
DUF35_N	PF12172.3	gi|146303053|ref|YP_001190369.1|	-	5.9e-09	35.5	2.4	9.4e-09	34.9	1.7	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|146303053|ref|YP_001190369.1|	-	7.2e-05	22.9	0.0	0.00013	22.1	0.0	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
NMD3	PF04981.8	gi|146303053|ref|YP_001190369.1|	-	0.0087	15.1	0.5	0.012	14.7	0.3	1.1	1	0	0	1	1	1	1	NMD3	family
zf-ribbon_3	PF13248.1	gi|146303053|ref|YP_001190369.1|	-	0.082	12.1	1.9	0.14	11.3	1.3	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|146303053|ref|YP_001190369.1|	-	1.4	8.5	7.0	2.8	7.6	4.9	1.5	1	1	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
DUF35_N	PF12172.3	gi|146303054|ref|YP_001190370.1|	-	8.6e-08	31.8	4.8	1.1e-07	31.5	2.6	1.7	2	0	0	2	2	2	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|146303054|ref|YP_001190370.1|	-	0.0019	18.3	0.1	0.0031	17.7	0.1	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain
NMD3	PF04981.8	gi|146303054|ref|YP_001190370.1|	-	0.014	14.4	0.4	0.023	13.8	0.3	1.2	1	0	0	1	1	1	0	NMD3	family
Ribosomal_L37e	PF01907.14	gi|146303054|ref|YP_001190370.1|	-	0.072	12.8	0.2	0.16	11.8	0.1	1.6	1	0	0	1	1	1	0	Ribosomal	protein	L37e
DUF2616	PF11077.3	gi|146303054|ref|YP_001190370.1|	-	0.083	12.3	0.1	0.087	12.3	0.1	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2616)
zf-ribbon_3	PF13248.1	gi|146303054|ref|YP_001190370.1|	-	0.099	11.8	1.9	0.18	11.0	1.3	1.5	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-FPG_IleRS	PF06827.9	gi|146303054|ref|YP_001190370.1|	-	0.47	10.1	4.9	0.95	9.1	3.4	1.6	1	0	0	1	1	1	0	Zinc	finger	found	in	FPG	and	IleRS
Thiolase_C	PF02803.13	gi|146303055|ref|YP_001190371.1|	-	0.0031	16.9	0.0	2.4	7.6	0.0	2.4	2	0	0	2	2	2	2	Thiolase,	C-terminal	domain
Thiolase_C	PF02803.13	gi|146303056|ref|YP_001190372.1|	-	0.0081	15.5	0.0	0.015	14.6	0.0	1.4	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
Pyr_redox_3	PF13738.1	gi|146303056|ref|YP_001190372.1|	-	0.041	13.9	0.0	0.081	12.9	0.0	1.5	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Acyl-CoA_dh_1	PF00441.19	gi|146303057|ref|YP_001190373.1|	-	2.5e-38	131.5	1.7	4.1e-38	130.8	1.2	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146303057|ref|YP_001190373.1|	-	3.3e-15	55.3	0.1	5.5e-15	54.6	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|146303057|ref|YP_001190373.1|	-	8.1e-14	52.0	0.2	1.5e-13	51.1	0.1	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|146303057|ref|YP_001190373.1|	-	1.6e-10	41.5	0.0	9.8e-10	39.0	0.0	2.2	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
4HBT	PF03061.17	gi|146303058|ref|YP_001190374.1|	-	1.3e-17	63.7	0.1	1.7e-17	63.2	0.1	1.2	1	0	0	1	1	1	1	Thioesterase	superfamily
4HBT_3	PF13622.1	gi|146303058|ref|YP_001190374.1|	-	3.4e-05	23.7	0.1	4.3e-05	23.3	0.1	1.0	1	0	0	1	1	1	1	Thioesterase-like	superfamily
DUF4442	PF14539.1	gi|146303058|ref|YP_001190374.1|	-	9.8e-05	22.3	0.1	0.00013	21.9	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4442)
MaoC_dehydratas	PF01575.14	gi|146303058|ref|YP_001190374.1|	-	0.0011	18.3	0.1	0.0014	18.0	0.1	1.2	1	0	0	1	1	1	1	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|146303058|ref|YP_001190374.1|	-	0.043	13.5	0.0	0.17	11.7	0.0	1.8	1	1	1	2	2	2	0	N-terminal	half	of	MaoC	dehydratase
PS-DH	PF14765.1	gi|146303058|ref|YP_001190374.1|	-	0.055	12.6	0.0	0.057	12.5	0.0	1.1	1	0	0	1	1	1	0	Polyketide	synthase	dehydratase
Acyl-CoA_dh_1	PF00441.19	gi|146303059|ref|YP_001190375.1|	-	1.5e-37	128.9	3.3	2.4e-37	128.3	2.3	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|146303059|ref|YP_001190375.1|	-	3.6e-23	82.2	0.0	1.7e-22	80.1	0.0	2.2	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146303059|ref|YP_001190375.1|	-	3e-15	55.4	0.2	6.7e-15	54.3	0.1	1.6	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|146303059|ref|YP_001190375.1|	-	1.5e-13	51.1	0.2	2.6e-13	50.3	0.1	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Aminotran_3	PF00202.16	gi|146303060|ref|YP_001190376.1|	-	3.7e-102	341.6	0.0	4.3e-102	341.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
Aminotran_1_2	PF00155.16	gi|146303060|ref|YP_001190376.1|	-	0.18	10.7	0.0	0.29	10.0	0.0	1.3	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
Acyl-CoA_dh_1	PF00441.19	gi|146303061|ref|YP_001190377.1|	-	2.6e-38	131.4	3.3	3.5e-38	131.0	2.3	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|146303061|ref|YP_001190377.1|	-	5.7e-25	88.0	0.0	1.5e-24	86.7	0.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|146303061|ref|YP_001190377.1|	-	3e-18	66.3	0.3	4.6e-18	65.7	0.2	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146303061|ref|YP_001190377.1|	-	2.1e-17	62.3	0.3	4.1e-17	61.4	0.2	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
HpaB_N	PF11794.3	gi|146303061|ref|YP_001190377.1|	-	0.00066	19.1	1.5	0.0015	18.0	0.1	2.1	2	1	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Ald_Xan_dh_C2	PF02738.13	gi|146303062|ref|YP_001190378.1|	-	1.1e-107	360.7	0.0	1.5e-107	360.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146303062|ref|YP_001190378.1|	-	1e-13	51.3	0.0	3.9e-13	49.4	0.0	1.9	1	1	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
MmgE_PrpD	PF03972.9	gi|146303063|ref|YP_001190379.1|	-	2.1e-111	372.2	0.0	2.5e-111	372.0	0.0	1.0	1	0	0	1	1	1	1	MmgE/PrpD	family
PEP_mutase	PF13714.1	gi|146303064|ref|YP_001190380.1|	-	2.1e-57	194.1	0.3	2.6e-57	193.7	0.2	1.1	1	0	0	1	1	1	1	Phosphoenolpyruvate	phosphomutase
ICL	PF00463.16	gi|146303064|ref|YP_001190380.1|	-	6e-15	54.4	1.0	2.7e-13	48.9	0.2	2.1	1	1	1	2	2	2	2	Isocitrate	lyase	family
Pantoate_transf	PF02548.10	gi|146303064|ref|YP_001190380.1|	-	0.02	14.0	0.1	0.042	12.9	0.0	1.6	1	1	0	1	1	1	0	Ketopantoate	hydroxymethyltransferase
DUF881	PF05949.7	gi|146303064|ref|YP_001190380.1|	-	0.068	12.6	0.0	0.15	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF881)
CBS	PF00571.23	gi|146303065|ref|YP_001190381.1|	-	7.3e-30	102.4	5.3	1.3e-15	56.8	0.7	2.1	2	0	0	2	2	2	2	CBS	domain
Citrate_synt	PF00285.16	gi|146303066|ref|YP_001190382.1|	-	1.2e-124	415.7	0.0	1.3e-124	415.5	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
FERM_M	PF00373.13	gi|146303066|ref|YP_001190382.1|	-	0.08	13.1	0.0	0.16	12.1	0.0	1.5	1	1	0	1	1	1	0	FERM	central	domain
NCD1	PF04904.8	gi|146303066|ref|YP_001190382.1|	-	0.11	12.2	0.0	0.28	10.9	0.0	1.6	1	0	0	1	1	1	0	NAB	conserved	region	1	(NCD1)
DUF3353	PF11833.3	gi|146303067|ref|YP_001190383.1|	-	0.21	11.0	4.9	0.29	10.5	3.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3353)
DUF3687	PF12459.3	gi|146303067|ref|YP_001190383.1|	-	1.5	8.1	6.5	0.26	10.5	0.4	2.7	2	0	0	2	2	2	0	D-Ala-teichoic	acid	biosynthesis	protein
Cytochrom_B_C	PF00032.12	gi|146303067|ref|YP_001190383.1|	-	3.3	7.9	7.2	2.3	8.5	1.4	2.3	1	1	1	2	2	2	0	Cytochrome	b(C-terminal)/b6/petD
DUF2173	PF09941.4	gi|146303068|ref|YP_001190384.1|	-	0.00083	19.2	0.0	0.0013	18.6	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
DUF2207	PF09972.4	gi|146303068|ref|YP_001190384.1|	-	0.0053	15.3	0.8	0.0056	15.3	0.5	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
SdpI	PF13630.1	gi|146303068|ref|YP_001190384.1|	-	0.06	13.0	2.1	0.11	12.2	1.4	1.4	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
Na_K-ATPase	PF00287.13	gi|146303068|ref|YP_001190384.1|	-	0.22	10.2	1.3	0.25	10.0	0.9	1.1	1	0	0	1	1	1	0	Sodium	/	potassium	ATPase	beta	chain
DUF2173	PF09941.4	gi|146303069|ref|YP_001190385.1|	-	0.00095	19.0	0.3	0.002	18.0	0.2	1.6	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
7TMR-DISM_7TM	PF07695.6	gi|146303070|ref|YP_001190386.1|	-	0.0045	16.6	11.7	0.0062	16.2	8.0	1.2	1	1	0	1	1	1	1	7TM	diverse	intracellular	signalling
COX15-CtaA	PF02628.10	gi|146303070|ref|YP_001190386.1|	-	0.024	13.5	5.8	0.028	13.2	4.0	1.1	1	0	0	1	1	1	0	Cytochrome	oxidase	assembly	protein
DUF1129	PF06570.6	gi|146303070|ref|YP_001190386.1|	-	1.2	8.3	5.5	0.28	10.4	1.4	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1129)
VIT1	PF01988.14	gi|146303072|ref|YP_001190388.1|	-	0.52	9.7	3.6	0.48	9.8	2.5	1.0	1	0	0	1	1	1	0	VIT	family
DUF2512	PF10710.4	gi|146303072|ref|YP_001190388.1|	-	0.66	9.4	4.8	0.74	9.2	3.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2512)
DUF3487	PF11990.3	gi|146303072|ref|YP_001190388.1|	-	1.3	8.4	3.6	1.9	7.8	2.5	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3487)
DUF3671	PF12420.3	gi|146303072|ref|YP_001190388.1|	-	1.6	8.7	6.4	1.9	8.5	4.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function
Phageshock_PspG	PF09583.5	gi|146303072|ref|YP_001190388.1|	-	1.7	8.7	9.2	2.4	8.3	6.4	1.3	1	0	0	1	1	1	0	Phage	shock	protein	G	(Phageshock_PspG)
Podoplanin	PF05808.6	gi|146303072|ref|YP_001190388.1|	-	2.9	7.4	7.8	3.6	7.1	1.4	2.0	1	1	1	2	2	2	0	Podoplanin
Rieske	PF00355.21	gi|146303073|ref|YP_001190389.1|	-	5.1e-13	48.4	1.1	1.3e-12	47.1	0.8	1.6	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
COX2	PF00116.15	gi|146303074|ref|YP_001190390.1|	-	1.7e-05	24.6	0.0	2.2e-05	24.2	0.0	1.3	1	0	0	1	1	1	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
COX1	PF00115.15	gi|146303075|ref|YP_001190391.1|	-	1.2e-94	317.4	52.2	1.5e-94	317.1	36.1	1.1	1	0	0	1	1	1	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Cytochrom_B_N_2	PF13631.1	gi|146303076|ref|YP_001190392.1|	-	1.7e-56	190.6	5.2	1.7e-56	190.6	3.6	3.8	4	0	0	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.12	gi|146303076|ref|YP_001190392.1|	-	0.0048	17.1	4.6	0.0048	17.1	3.2	4.0	4	1	1	5	5	5	1	Cytochrome	b(C-terminal)/b6/petD
DUF1404	PF07185.6	gi|146303077|ref|YP_001190393.1|	-	1.4e-56	190.6	14.5	1.6e-56	190.5	10.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
DUF3671	PF12420.3	gi|146303077|ref|YP_001190393.1|	-	0.23	11.4	2.5	0.17	11.8	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function
MFS_1	PF07690.11	gi|146303078|ref|YP_001190394.1|	-	0.35	9.5	46.5	6.4e+02	-1.3	32.3	3.0	1	1	0	1	1	1	0	Major	Facilitator	Superfamily
DUF3501	PF12007.3	gi|146303079|ref|YP_001190395.1|	-	1.1e-47	162.2	1.0	1.2e-47	162.1	0.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3501)
Spt5-NGN	PF03439.8	gi|146303079|ref|YP_001190395.1|	-	0.089	12.5	0.0	0.19	11.4	0.0	1.6	1	0	0	1	1	1	0	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
CCG	PF02754.11	gi|146303080|ref|YP_001190396.1|	-	6.5e-16	58.1	4.4	5.8e-11	42.2	0.1	2.8	3	0	0	3	3	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|146303080|ref|YP_001190396.1|	-	2.3e-07	30.7	3.7	5.7e-07	29.4	2.6	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146303080|ref|YP_001190396.1|	-	1.8e-05	24.4	4.6	0.026	14.3	0.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303080|ref|YP_001190396.1|	-	5.8e-05	23.3	6.1	0.00015	22.0	4.3	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303080|ref|YP_001190396.1|	-	9.1e-05	22.1	6.7	0.00031	20.4	4.7	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303080|ref|YP_001190396.1|	-	0.00011	21.8	6.2	0.055	13.4	0.2	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146303080|ref|YP_001190396.1|	-	0.001	19.2	7.5	0.0026	18.0	5.2	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303080|ref|YP_001190396.1|	-	0.0017	18.6	10.1	0.03	14.6	7.2	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303080|ref|YP_001190396.1|	-	0.0021	18.2	10.5	0.33	11.4	1.4	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303080|ref|YP_001190396.1|	-	0.0022	18.3	3.8	1.3	9.4	0.2	2.8	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303080|ref|YP_001190396.1|	-	0.0025	17.3	10.5	0.073	12.7	1.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303080|ref|YP_001190396.1|	-	0.024	14.5	13.4	0.065	13.1	1.3	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303080|ref|YP_001190396.1|	-	2.3	8.9	14.7	3.4	8.4	2.1	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303080|ref|YP_001190396.1|	-	6.8	7.5	13.0	32	5.3	1.6	2.6	1	1	1	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|146303080|ref|YP_001190396.1|	-	9.1	6.7	7.8	4.3	7.8	0.3	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Rubrerythrin	PF02915.12	gi|146303081|ref|YP_001190397.1|	-	8.7e-25	87.6	1.2	1.1e-24	87.2	0.8	1.1	1	0	0	1	1	1	1	Rubrerythrin
Ferritin	PF00210.19	gi|146303081|ref|YP_001190397.1|	-	4.5e-10	39.4	0.6	0.00039	20.1	0.0	2.1	1	1	1	2	2	2	2	Ferritin-like	domain
PSD4	PF07631.6	gi|146303081|ref|YP_001190397.1|	-	0.019	15.3	0.1	4.1	7.7	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1592)
FA_desaturase_2	PF03405.9	gi|146303081|ref|YP_001190397.1|	-	0.021	13.6	0.0	0.17	10.6	0.0	1.7	1	1	0	2	2	2	0	Fatty	acid	desaturase
Ald_Xan_dh_C2	PF02738.13	gi|146303082|ref|YP_001190398.1|	-	5.6e-132	440.8	0.1	7e-132	440.5	0.1	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146303082|ref|YP_001190398.1|	-	3.7e-25	88.1	0.0	1.4e-24	86.3	0.0	2.0	2	0	0	2	2	2	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Fer2_2	PF01799.15	gi|146303083|ref|YP_001190399.1|	-	5.7e-31	106.2	0.1	5.7e-31	106.2	0.1	1.8	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|146303083|ref|YP_001190399.1|	-	3.1e-06	26.8	0.6	3.1e-06	26.8	0.4	2.2	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|146303083|ref|YP_001190399.1|	-	0.00027	20.7	3.6	0.00042	20.1	2.4	1.6	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
SUI1	PF01253.17	gi|146303083|ref|YP_001190399.1|	-	0.0042	16.8	0.6	0.0095	15.7	0.0	2.0	2	2	0	2	2	2	1	Translation	initiation	factor	SUI1
FrpC	PF06901.7	gi|146303083|ref|YP_001190399.1|	-	0.019	14.5	0.0	0.028	13.9	0.0	1.2	1	0	0	1	1	1	0	RTX	iron-regulated	protein	FrpC
Gly_rich_SFCGS	PF14272.1	gi|146303083|ref|YP_001190399.1|	-	0.053	13.4	0.1	0.069	13.0	0.1	1.4	1	0	0	1	1	1	0	Glycine-rich	SFCGS
FAD_binding_5	PF00941.16	gi|146303084|ref|YP_001190400.1|	-	6.4e-43	146.1	0.0	9.1e-43	145.6	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|146303084|ref|YP_001190400.1|	-	1e-23	83.2	0.0	1.8e-23	82.4	0.0	1.4	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
Glyco_transf_90	PF05686.7	gi|146303084|ref|YP_001190400.1|	-	0.1	11.2	0.0	0.15	10.7	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	transferase	family	90
Peptidase_M1	PF01433.15	gi|146303085|ref|YP_001190401.1|	-	2.4e-45	155.2	3.0	1.2e-44	152.9	2.1	2.0	1	1	0	1	1	1	1	Peptidase	family	M1
HEAT_2	PF13646.1	gi|146303085|ref|YP_001190401.1|	-	2.1e-29	101.6	2.7	1.6e-08	34.7	0.1	3.7	1	1	3	4	4	4	4	HEAT	repeats
Peptidase_MA_2	PF13485.1	gi|146303085|ref|YP_001190401.1|	-	2.4e-17	63.1	3.8	2.4e-17	63.1	2.6	2.0	2	0	0	2	2	2	1	Peptidase	MA	superfamily
HEAT_PBS	PF03130.11	gi|146303085|ref|YP_001190401.1|	-	5.9e-15	54.1	5.3	0.0094	16.3	0.0	7.5	7	0	0	7	7	7	5	PBS	lyase	HEAT-like	repeat
HEAT	PF02985.17	gi|146303085|ref|YP_001190401.1|	-	2.4e-05	24.0	0.1	11	6.4	0.0	5.7	5	0	0	5	5	5	1	HEAT	repeat
HEAT_EZ	PF13513.1	gi|146303085|ref|YP_001190401.1|	-	0.022	15.2	4.6	3.6	8.2	0.3	4.4	4	2	1	5	5	5	0	HEAT-like	repeat
DUF1570	PF07607.6	gi|146303085|ref|YP_001190401.1|	-	0.055	13.4	0.0	0.15	12.0	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1570)
HTH_45	PF14947.1	gi|146303086|ref|YP_001190402.1|	-	1.8e-12	46.8	0.4	5.8e-12	45.2	0.3	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix
DUF2603	PF10788.4	gi|146303086|ref|YP_001190402.1|	-	0.027	14.2	0.1	0.035	13.8	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2603)
PIN	PF01850.16	gi|146303087|ref|YP_001190403.1|	-	6.8e-12	45.7	0.1	7.6e-12	45.6	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
zf-CDGSH	PF09360.5	gi|146303087|ref|YP_001190403.1|	-	0.17	11.7	0.7	0.9	9.4	0.0	2.1	2	0	0	2	2	2	0	Iron-binding	zinc	finger	CDGSH	type
Na_Ca_ex	PF01699.19	gi|146303088|ref|YP_001190404.1|	-	9.6e-11	41.4	31.0	7.5e-10	38.5	7.4	2.4	2	1	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF4481	PF14800.1	gi|146303088|ref|YP_001190404.1|	-	0.15	10.9	1.8	0.26	10.1	1.3	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4481)
DUF3188	PF11384.3	gi|146303088|ref|YP_001190404.1|	-	0.79	9.3	6.2	3.2	7.3	0.0	4.3	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3188)
Fer4_11	PF13247.1	gi|146303090|ref|YP_001190406.1|	-	1.6e-23	82.4	10.4	1.6e-23	82.4	7.2	2.0	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303090|ref|YP_001190406.1|	-	1e-15	56.5	30.6	1.3e-08	34.0	1.2	5.1	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303090|ref|YP_001190406.1|	-	1.6e-12	46.6	35.4	4.8e-07	29.3	0.9	4.5	4	1	0	4	4	4	4	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146303090|ref|YP_001190406.1|	-	2.4e-12	46.8	23.2	7.9e-08	32.4	4.8	3.3	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303090|ref|YP_001190406.1|	-	3e-11	43.5	28.7	1e-06	28.9	6.2	3.4	2	2	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303090|ref|YP_001190406.1|	-	1.4e-10	40.4	33.0	8.5e-07	28.5	1.6	4.8	4	1	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146303090|ref|YP_001190406.1|	-	5.9e-10	38.7	30.8	3.4e-06	26.7	6.1	3.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303090|ref|YP_001190406.1|	-	3.4e-07	30.0	34.7	0.00024	21.1	2.1	4.8	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303090|ref|YP_001190406.1|	-	2.7e-06	27.1	22.7	0.00013	21.7	3.5	2.6	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146303090|ref|YP_001190406.1|	-	1.2e-05	25.4	43.2	0.01	16.3	2.0	4.3	4	0	0	4	4	4	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303090|ref|YP_001190406.1|	-	2.9e-05	24.7	26.7	0.67	10.7	3.5	4.5	3	1	1	4	4	4	4	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|146303090|ref|YP_001190406.1|	-	7.6e-05	22.6	27.1	0.075	13.0	6.6	3.4	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|146303090|ref|YP_001190406.1|	-	0.00019	21.9	22.5	0.0026	18.3	2.3	3.4	2	2	0	2	2	2	2	4Fe-4S	single	cluster	domain
DmsC	PF04976.7	gi|146303090|ref|YP_001190406.1|	-	0.014	14.6	14.1	0.022	14.0	8.1	2.2	1	1	2	3	3	3	0	DMSO	reductase	anchor	subunit	(DmsC)
Fer4_17	PF13534.1	gi|146303090|ref|YP_001190406.1|	-	0.015	15.6	27.2	0.21	11.9	1.8	4.4	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|146303090|ref|YP_001190406.1|	-	0.088	13.2	26.4	0.17	12.3	1.4	3.7	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
POR	PF01558.13	gi|146303091|ref|YP_001190407.1|	-	9.1e-37	126.6	0.0	1.2e-36	126.1	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4_21	PF14697.1	gi|146303092|ref|YP_001190408.1|	-	7.2e-14	51.3	18.8	1.6e-10	40.6	7.1	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303092|ref|YP_001190408.1|	-	6.3e-12	44.5	16.9	1.2e-08	34.2	3.5	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146303092|ref|YP_001190408.1|	-	2.7e-10	40.4	12.4	3.8e-10	39.9	8.6	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303092|ref|YP_001190408.1|	-	5.3e-10	38.7	13.3	7e-06	25.6	2.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146303092|ref|YP_001190408.1|	-	4.4e-09	35.9	9.4	6.1e-09	35.5	6.5	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303092|ref|YP_001190408.1|	-	1.5e-08	34.7	12.7	2.2e-08	34.2	8.8	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146303092|ref|YP_001190408.1|	-	2.8e-08	34.3	8.3	9.3e-05	23.0	1.4	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|146303092|ref|YP_001190408.1|	-	3.5e-08	32.9	13.4	0.0007	19.3	2.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303092|ref|YP_001190408.1|	-	7.6e-07	29.4	8.7	0.0032	17.8	0.6	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303092|ref|YP_001190408.1|	-	1.9e-06	28.1	5.5	0.0044	17.3	0.1	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146303092|ref|YP_001190408.1|	-	5.5e-06	26.3	32.7	0.00083	19.3	8.9	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303092|ref|YP_001190408.1|	-	7.9e-06	25.7	14.2	0.0031	17.7	2.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303092|ref|YP_001190408.1|	-	0.00012	22.3	19.8	0.025	15.1	2.7	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|146303092|ref|YP_001190408.1|	-	0.00034	20.9	10.0	0.034	14.5	1.0	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|146303092|ref|YP_001190408.1|	-	0.0016	18.9	11.8	0.18	12.3	0.7	2.7	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
POR_N	PF01855.14	gi|146303093|ref|YP_001190409.1|	-	5.7e-68	228.8	0.8	7.3e-68	228.5	0.6	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|146303093|ref|YP_001190409.1|	-	9.2e-08	32.0	0.0	2.4e-07	30.6	0.0	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|146303093|ref|YP_001190409.1|	-	0.00053	19.5	0.4	0.0019	17.7	0.4	1.8	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
SHOCT	PF09851.4	gi|146303093|ref|YP_001190409.1|	-	0.026	13.9	0.9	0.1	12.0	0.1	2.2	2	0	0	2	2	2	0	Short	C-terminal	domain
TPP_enzyme_C	PF02775.16	gi|146303094|ref|YP_001190410.1|	-	8.7e-23	80.5	0.1	1.2e-22	80.0	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|146303094|ref|YP_001190410.1|	-	0.0066	15.4	0.0	0.012	14.6	0.0	1.4	1	1	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
E1_dh	PF00676.15	gi|146303094|ref|YP_001190410.1|	-	0.016	13.9	0.3	0.022	13.5	0.2	1.2	1	0	0	1	1	1	0	Dehydrogenase	E1	component
DNMT1-RFD	PF12047.3	gi|146303094|ref|YP_001190410.1|	-	0.084	12.5	0.0	0.14	11.7	0.0	1.3	1	0	0	1	1	1	0	Cytosine	specific	DNA	methyltransferase	replication	foci	domain
MFS_1	PF07690.11	gi|146303095|ref|YP_001190411.1|	-	3.8e-22	78.4	50.3	3.3e-19	68.8	24.0	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
CAAD	PF14159.1	gi|146303095|ref|YP_001190411.1|	-	0.081	12.5	1.2	0.62	9.7	0.0	2.8	2	0	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
MFS_1	PF07690.11	gi|146303097|ref|YP_001190413.1|	-	7.5e-49	166.3	44.0	3e-48	164.3	30.5	1.8	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303097|ref|YP_001190413.1|	-	5.7e-15	54.8	30.9	9e-15	54.1	8.0	2.8	2	1	1	3	3	3	2	Sugar	(and	other)	transporter
HTH_Tnp_IS1	PF12759.2	gi|146303097|ref|YP_001190413.1|	-	0.038	13.4	0.4	0.075	12.4	0.3	1.5	1	0	0	1	1	1	0	InsA	C-terminal	domain
Pro-kuma_activ	PF09286.6	gi|146303098|ref|YP_001190414.1|	-	4.6e-19	68.8	0.0	9.5e-19	67.8	0.0	1.5	2	0	0	2	2	2	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.17	gi|146303098|ref|YP_001190414.1|	-	0.035	13.2	0.0	0.062	12.4	0.0	1.5	1	1	0	1	1	1	0	Subtilase	family
EamA	PF00892.15	gi|146303100|ref|YP_001190416.1|	-	6.2e-30	103.8	18.7	2.6e-15	56.5	5.7	2.2	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|146303100|ref|YP_001190416.1|	-	0.00067	19.8	14.6	0.029	14.5	3.3	3.1	2	2	1	3	3	3	2	Multidrug	resistance	efflux	transporter
ATP_synt_I	PF03899.10	gi|146303100|ref|YP_001190416.1|	-	0.19	11.9	10.9	2.5	8.2	4.5	2.9	1	1	1	2	2	2	0	ATP	synthase	I	chain
RseC_MucC	PF04246.7	gi|146303100|ref|YP_001190416.1|	-	9.2	5.8	10.8	0.78	9.3	0.7	3.2	2	1	0	3	3	3	0	Positive	regulator	of	sigma(E),	RseC/MucC
DUF4012	PF13196.1	gi|146303101|ref|YP_001190417.1|	-	0.087	12.9	0.0	0.15	12.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4012)
Resolvase	PF00239.16	gi|146303101|ref|YP_001190417.1|	-	0.089	12.6	0.2	0.11	12.2	0.2	1.1	1	0	0	1	1	1	0	Resolvase,	N	terminal	domain
Phage_int_SAM_5	PF13102.1	gi|146303101|ref|YP_001190417.1|	-	0.098	12.6	0.5	0.11	12.5	0.3	1.1	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Flu_B_M2	PF04772.7	gi|146303101|ref|YP_001190417.1|	-	0.11	12.5	0.1	0.11	12.5	0.1	1.3	1	0	0	1	1	1	0	Influenza	B	matrix	protein	2	(BM2)
AA_permease_N	PF08403.5	gi|146303101|ref|YP_001190417.1|	-	0.13	11.5	0.3	0.23	10.7	0.2	1.5	1	1	0	1	1	1	0	Amino	acid	permease	N-terminal
NusB	PF01029.13	gi|146303101|ref|YP_001190417.1|	-	0.15	12.0	0.7	0.16	11.9	0.5	1.0	1	0	0	1	1	1	0	NusB	family
DUF4407	PF14362.1	gi|146303104|ref|YP_001190420.1|	-	0.045	12.7	0.1	0.045	12.7	0.1	1.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4407)
TMEMspv1-c74-12	PF11044.3	gi|146303104|ref|YP_001190420.1|	-	0.31	10.6	5.7	0.24	10.9	1.9	2.2	2	0	0	2	2	2	0	Plectrovirus	spv1-c74	ORF	12	transmembrane	protein
DUF1761	PF08570.5	gi|146303104|ref|YP_001190420.1|	-	0.4	10.6	6.5	0.67	9.9	0.5	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1761)
DUF1673	PF07895.6	gi|146303104|ref|YP_001190420.1|	-	0.93	8.9	8.7	1.6	8.1	6.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1673)
COX2	PF00116.15	gi|146303105|ref|YP_001190421.1|	-	3.8e-22	78.3	1.1	7e-21	74.2	0.1	2.1	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
Cupredoxin_1	PF13473.1	gi|146303105|ref|YP_001190421.1|	-	0.0001	22.1	0.0	0.00012	21.8	0.0	1.3	1	0	0	1	1	1	1	Cupredoxin-like	domain
DUF3309	PF11752.3	gi|146303105|ref|YP_001190421.1|	-	0.059	13.1	0.2	0.12	12.2	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3309)
Cytochrom_B_N_2	PF13631.1	gi|146303106|ref|YP_001190422.1|	-	5.6e-32	110.8	6.8	5.6e-32	110.8	4.7	2.6	2	0	0	2	2	2	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_N	PF00033.14	gi|146303106|ref|YP_001190422.1|	-	0.0011	18.3	19.4	0.0011	18.3	13.5	3.3	3	2	1	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
Cytochrom_B_C	PF00032.12	gi|146303106|ref|YP_001190422.1|	-	0.0016	18.5	2.2	0.0016	18.5	1.5	4.0	5	0	0	5	5	5	1	Cytochrome	b(C-terminal)/b6/petD
Rieske	PF00355.21	gi|146303107|ref|YP_001190423.1|	-	1.3e-15	56.6	0.0	2.2e-15	56.0	0.0	1.4	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
SoxE	PF06525.6	gi|146303108|ref|YP_001190424.1|	-	5.9e-79	263.9	13.7	7e-79	263.6	9.5	1.0	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)
Cu-oxidase_2	PF07731.9	gi|146303108|ref|YP_001190424.1|	-	0.022	14.2	0.1	0.11	12.0	0.0	2.0	2	1	0	2	2	2	0	Multicopper	oxidase
Trs65	PF12735.2	gi|146303108|ref|YP_001190424.1|	-	0.034	13.4	2.5	0.039	13.2	1.7	1.1	1	0	0	1	1	1	0	TRAPP	trafficking	subunit	Trs65
NigD	PF12667.2	gi|146303108|ref|YP_001190424.1|	-	0.048	13.4	0.2	0.066	13.0	0.1	1.2	1	0	0	1	1	1	0	NigD-like	protein
Cupredoxin_1	PF13473.1	gi|146303108|ref|YP_001190424.1|	-	0.095	12.6	0.0	4.5	7.2	0.0	2.5	2	1	0	2	2	2	0	Cupredoxin-like	domain
DUF3112	PF11309.3	gi|146303108|ref|YP_001190424.1|	-	0.1	12.3	2.0	0.12	12.1	1.4	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3112)
DUF1628	PF07790.6	gi|146303108|ref|YP_001190424.1|	-	3.2	8.5	6.8	8.3	7.2	4.7	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
COX1	PF00115.15	gi|146303109|ref|YP_001190425.1|	-	1.2e-126	422.9	59.3	1.2e-126	422.9	41.1	3.0	3	0	0	3	3	3	1	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX3	PF00510.13	gi|146303109|ref|YP_001190425.1|	-	3.5e-18	65.9	13.0	3.5e-18	65.9	9.0	2.3	2	0	0	2	2	2	1	Cytochrome	c	oxidase	subunit	III
Sec62	PF03839.11	gi|146303109|ref|YP_001190425.1|	-	5.2	6.4	7.1	25	4.1	4.9	2.1	1	0	0	1	1	1	0	Translocation	protein	Sec62
DUF1404	PF07185.6	gi|146303110|ref|YP_001190426.1|	-	1.5e-53	180.8	13.9	1.7e-53	180.6	9.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
DUF1404	PF07185.6	gi|146303111|ref|YP_001190427.1|	-	9.8e-62	207.4	11.8	1.1e-61	207.2	8.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
FUSC-like	PF12805.2	gi|146303112|ref|YP_001190428.1|	-	0.48	9.3	3.4	0.57	9.0	2.3	1.1	1	0	0	1	1	1	0	FUSC-like	inner	membrane	protein	yccS
Pkinase	PF00069.20	gi|146303114|ref|YP_001190430.1|	-	4.5e-26	91.5	0.0	6.6e-26	91.0	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|146303114|ref|YP_001190430.1|	-	5.8e-08	32.1	0.0	1.5e-07	30.8	0.0	1.7	1	1	0	1	1	1	1	Protein	tyrosine	kinase
BiPBP_C	PF06832.7	gi|146303114|ref|YP_001190430.1|	-	0.0033	17.3	0.0	0.44	10.5	0.0	2.7	2	0	0	2	2	2	1	Penicillin-Binding	Protein	C-terminus	Family
PPC	PF04151.10	gi|146303114|ref|YP_001190430.1|	-	0.073	14.0	0.2	0.48	11.4	0.1	2.4	1	1	0	1	1	1	0	Bacterial	pre-peptidase	C-terminal	domain
Ldl_recept_a	PF00057.13	gi|146303114|ref|YP_001190430.1|	-	0.48	10.3	1.3	0.99	9.3	0.1	1.9	2	0	0	2	2	2	0	Low-density	lipoprotein	receptor	domain	class	A
ETF	PF01012.16	gi|146303116|ref|YP_001190432.1|	-	2.7e-30	105.2	0.4	3.6e-30	104.8	0.3	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|146303117|ref|YP_001190433.1|	-	2e-33	113.8	1.0	8.3e-33	111.8	0.1	2.2	2	1	0	2	2	2	1	Electron	transfer	flavoprotein	FAD-binding	domain
ETF	PF01012.16	gi|146303117|ref|YP_001190433.1|	-	5.1e-16	58.8	0.0	9.7e-16	57.9	0.0	1.4	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	domain
FAD_oxidored	PF12831.2	gi|146303118|ref|YP_001190434.1|	-	6.1e-15	55.2	0.4	4e-14	52.5	0.0	2.1	2	1	1	3	3	3	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|146303118|ref|YP_001190434.1|	-	1.2e-14	54.0	5.2	9.3e-09	34.6	0.1	2.3	1	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|146303118|ref|YP_001190434.1|	-	5.4e-10	38.6	1.0	1.1e-09	37.7	0.7	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|146303118|ref|YP_001190434.1|	-	1.8e-08	33.8	1.0	1.1e-07	31.3	0.7	1.9	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|146303118|ref|YP_001190434.1|	-	2.2e-06	26.4	3.7	7e-05	21.4	0.6	2.9	3	0	0	3	3	3	1	HI0933-like	protein
Thi4	PF01946.12	gi|146303118|ref|YP_001190434.1|	-	2.2e-05	23.6	0.2	0.00022	20.3	0.3	2.4	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|146303118|ref|YP_001190434.1|	-	6.3e-05	23.1	0.1	0.00021	21.4	0.1	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303118|ref|YP_001190434.1|	-	6.8e-05	22.8	1.2	0.00024	21.0	0.8	2.0	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|146303118|ref|YP_001190434.1|	-	7.9e-05	22.6	0.9	9.7e-05	22.3	0.1	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146303118|ref|YP_001190434.1|	-	0.00013	20.9	0.3	0.00013	20.9	0.2	1.7	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
Lycopene_cycl	PF05834.7	gi|146303118|ref|YP_001190434.1|	-	0.0004	19.4	0.1	0.0012	17.8	0.1	1.8	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.22	gi|146303118|ref|YP_001190434.1|	-	0.0044	17.3	3.1	0.4	11.1	0.6	3.0	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|146303118|ref|YP_001190434.1|	-	0.019	13.6	0.4	0.13	10.8	0.0	2.0	2	0	0	2	2	2	0	Tryptophan	halogenase
Fer4_7	PF12838.2	gi|146303119|ref|YP_001190435.1|	-	2.4e-08	34.2	7.6	7.8e-06	26.1	2.3	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303119|ref|YP_001190435.1|	-	3.3e-07	29.9	6.3	4.3e-07	29.6	4.3	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|146303119|ref|YP_001190435.1|	-	4.7e-07	29.6	1.8	5.7e-07	29.3	1.3	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303119|ref|YP_001190435.1|	-	1.5e-05	25.1	8.0	0.00019	21.5	6.1	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303119|ref|YP_001190435.1|	-	6.6e-05	22.5	9.9	0.064	13.1	1.8	2.9	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303119|ref|YP_001190435.1|	-	6.8e-05	22.6	2.4	0.11	12.3	0.5	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146303119|ref|YP_001190435.1|	-	0.00026	20.9	2.2	0.14	12.2	0.0	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303119|ref|YP_001190435.1|	-	0.00042	20.0	13.2	0.0065	16.3	2.6	2.7	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146303119|ref|YP_001190435.1|	-	0.00088	18.7	13.9	0.033	13.7	1.2	3.9	3	1	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303119|ref|YP_001190435.1|	-	0.0024	18.2	14.6	0.064	13.8	1.6	2.5	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303119|ref|YP_001190435.1|	-	0.0071	17.0	6.4	0.81	10.4	0.0	2.3	2	1	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
VSP	PF03302.8	gi|146303119|ref|YP_001190435.1|	-	0.015	13.9	0.4	0.015	13.9	0.3	1.0	1	0	0	1	1	1	0	Giardia	variant-specific	surface	protein
Fer4_17	PF13534.1	gi|146303119|ref|YP_001190435.1|	-	0.094	13.0	7.2	2	8.8	0.1	2.1	1	1	2	3	3	3	0	4Fe-4S	dicluster	domain
ETF_QO	PF05187.8	gi|146303119|ref|YP_001190435.1|	-	0.12	12.3	0.1	0.16	11.9	0.1	1.2	1	0	0	1	1	1	0	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase
Fer4_20	PF14691.1	gi|146303119|ref|YP_001190435.1|	-	0.17	11.5	8.5	0.6	9.7	1.9	2.1	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_18	PF13746.1	gi|146303119|ref|YP_001190435.1|	-	0.28	11.6	3.9	3.4	8.1	0.5	2.1	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303119|ref|YP_001190435.1|	-	0.5	10.8	12.7	1.9	9.0	2.0	2.8	2	1	0	2	2	2	0	4Fe-4S	binding	domain
GCC2_GCC3	PF07699.8	gi|146303119|ref|YP_001190435.1|	-	0.93	9.1	4.9	3.2	7.4	3.4	2.0	1	1	0	1	1	1	0	GCC2	and	GCC3
VWA_2	PF13519.1	gi|146303120|ref|YP_001190436.1|	-	3.2e-22	79.4	0.1	6.8e-22	78.3	0.0	1.6	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|146303120|ref|YP_001190436.1|	-	3e-14	53.1	0.2	1.1e-13	51.3	0.1	1.9	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|146303120|ref|YP_001190436.1|	-	4.2e-10	39.5	0.0	3.7e-09	36.4	0.0	2.2	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|146303120|ref|YP_001190436.1|	-	2.6e-07	29.9	0.1	8.9e-05	21.7	0.0	2.3	2	0	0	2	2	2	2	VWA	domain	containing	CoxE-like	protein
vWA-TerF-like	PF10138.4	gi|146303120|ref|YP_001190436.1|	-	6.8e-06	26.0	0.1	7.1e-05	22.7	0.0	2.4	2	0	0	2	2	2	1	vWA	found	in	TerF	C	terminus
ECH	PF00378.15	gi|146303121|ref|YP_001190437.1|	-	5.6e-38	130.4	0.0	6.6e-38	130.2	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
EamA	PF00892.15	gi|146303122|ref|YP_001190438.1|	-	3.7e-37	127.1	34.6	8e-21	74.3	7.3	2.5	2	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|146303122|ref|YP_001190438.1|	-	1.3e-06	28.6	30.6	0.00015	21.9	6.8	3.3	1	1	3	4	4	4	2	Multidrug	resistance	efflux	transporter
TPT	PF03151.11	gi|146303122|ref|YP_001190438.1|	-	0.00027	20.6	18.9	0.028	14.0	3.5	2.9	2	2	0	2	2	2	2	Triose-phosphate	Transporter	family
UAA	PF08449.6	gi|146303122|ref|YP_001190438.1|	-	0.22	10.3	14.0	0.051	12.4	0.7	2.4	2	1	0	2	2	2	0	UAA	transporter	family
3Beta_HSD	PF01073.14	gi|146303123|ref|YP_001190439.1|	-	0.087	11.5	0.0	0.1	11.2	0.0	1.1	1	0	0	1	1	1	0	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
RHH_1	PF01402.16	gi|146303124|ref|YP_001190440.1|	-	0.00051	19.8	1.4	0.01	15.6	0.7	2.7	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CcdA	PF07362.7	gi|146303124|ref|YP_001190440.1|	-	0.0071	16.1	0.4	0.0083	15.9	0.3	1.2	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
CENP-F_leu_zip	PF10473.4	gi|146303124|ref|YP_001190440.1|	-	0.045	13.6	2.6	0.048	13.5	1.8	1.0	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
RED_C	PF07807.6	gi|146303124|ref|YP_001190440.1|	-	0.055	13.6	0.2	0.059	13.5	0.1	1.1	1	0	0	1	1	1	0	RED-like	protein	C-terminal	region
LEM	PF03020.10	gi|146303124|ref|YP_001190440.1|	-	0.097	12.1	0.2	0.26	10.7	0.0	1.7	2	0	0	2	2	2	0	LEM	domain
Abhydrolase_5	PF12695.2	gi|146303125|ref|YP_001190441.1|	-	2.5e-08	33.8	0.0	2.2e-07	30.7	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Peptidase_S9	PF00326.16	gi|146303125|ref|YP_001190441.1|	-	2.8e-06	26.7	0.0	4.4e-06	26.0	0.0	1.5	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_2	PF02230.11	gi|146303125|ref|YP_001190441.1|	-	4.1e-06	26.3	0.0	0.00023	20.6	0.0	2.5	3	0	0	3	3	3	1	Phospholipase/Carboxylesterase
Abhydrolase_6	PF12697.2	gi|146303125|ref|YP_001190441.1|	-	0.00028	20.8	0.3	0.0021	18.0	0.2	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
FSH1	PF03959.8	gi|146303125|ref|YP_001190441.1|	-	0.061	12.7	0.1	0.13	11.6	0.0	1.7	1	1	0	1	1	1	0	Serine	hydrolase	(FSH1)
Esterase	PF00756.15	gi|146303125|ref|YP_001190441.1|	-	0.071	12.5	0.0	0.11	11.9	0.0	1.2	1	0	0	1	1	1	0	Putative	esterase
ACT_6	PF13740.1	gi|146303127|ref|YP_001190443.1|	-	4e-17	61.6	0.6	4.7e-17	61.4	0.4	1.1	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|146303127|ref|YP_001190443.1|	-	6e-12	44.7	0.7	7.5e-12	44.4	0.5	1.1	1	0	0	1	1	1	1	ACT	domain
ACT_7	PF13840.1	gi|146303127|ref|YP_001190443.1|	-	7.6e-06	25.3	0.6	1.2e-05	24.7	0.4	1.4	1	0	0	1	1	1	1	ACT	domain
ACT_4	PF13291.1	gi|146303127|ref|YP_001190443.1|	-	0.00033	20.9	0.6	0.00045	20.5	0.4	1.2	1	0	0	1	1	1	1	ACT	domain
DUF711	PF05167.7	gi|146303128|ref|YP_001190444.1|	-	7.9e-135	449.6	2.5	9.5e-135	449.3	1.7	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
Peptidase_M32	PF02074.10	gi|146303129|ref|YP_001190445.1|	-	1.6e-161	538.3	0.5	1.8e-161	538.1	0.4	1.0	1	0	0	1	1	1	1	Carboxypeptidase	Taq	(M32)	metallopeptidase
adh_short_C2	PF13561.1	gi|146303130|ref|YP_001190446.1|	-	7.5e-32	111.0	0.0	9.9e-32	110.6	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|146303130|ref|YP_001190446.1|	-	9.8e-32	110.1	0.0	2.7e-31	108.7	0.0	1.6	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146303130|ref|YP_001190446.1|	-	1.6e-12	47.4	0.0	2.7e-12	46.7	0.0	1.4	1	0	0	1	1	1	1	KR	domain
NmrA	PF05368.8	gi|146303130|ref|YP_001190446.1|	-	8.1e-06	25.2	0.1	2e-05	24.0	0.0	1.6	2	0	0	2	2	2	1	NmrA-like	family
Epimerase	PF01370.16	gi|146303130|ref|YP_001190446.1|	-	1.6e-05	24.4	0.0	3.4e-05	23.4	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_10	PF13460.1	gi|146303130|ref|YP_001190446.1|	-	9.5e-05	22.4	0.0	0.00012	22.0	0.0	1.5	1	1	0	1	1	1	1	NADH(P)-binding
3Beta_HSD	PF01073.14	gi|146303130|ref|YP_001190446.1|	-	0.00026	19.7	0.0	0.00036	19.3	0.0	1.3	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
TrkA_N	PF02254.13	gi|146303130|ref|YP_001190446.1|	-	0.0067	16.4	0.3	0.019	14.9	0.1	1.8	2	0	0	2	2	2	1	TrkA-N	domain
Polysacc_synt_2	PF02719.10	gi|146303130|ref|YP_001190446.1|	-	0.093	11.6	0.0	0.14	11.0	0.0	1.2	1	0	0	1	1	1	0	Polysaccharide	biosynthesis	protein
RPEL	PF02755.10	gi|146303130|ref|YP_001190446.1|	-	0.12	11.7	0.9	6.5	6.2	0.2	2.5	2	0	0	2	2	2	0	RPEL	repeat
DUF520	PF04461.8	gi|146303132|ref|YP_001190448.1|	-	0.053	13.3	0.6	0.077	12.8	0.4	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF520)
SNARE_assoc	PF09335.6	gi|146303133|ref|YP_001190449.1|	-	0.059	13.5	7.2	0.13	12.4	0.6	2.1	1	1	1	2	2	2	0	SNARE	associated	Golgi	protein
DUF4040	PF13244.1	gi|146303133|ref|YP_001190449.1|	-	0.062	13.3	0.4	0.062	13.3	0.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4040)
ABC2_membrane_3	PF12698.2	gi|146303133|ref|YP_001190449.1|	-	0.095	11.7	8.6	0.2	10.6	6.0	1.5	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
MPC	PF03650.8	gi|146303133|ref|YP_001190449.1|	-	0.097	12.6	0.1	0.14	12.1	0.0	1.3	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0041)
Aminotran_1_2	PF00155.16	gi|146303133|ref|YP_001190449.1|	-	0.12	11.2	0.0	0.13	11.1	0.0	1.1	1	0	0	1	1	1	0	Aminotransferase	class	I	and	II
DUF4190	PF13828.1	gi|146303133|ref|YP_001190449.1|	-	0.92	9.1	12.2	1	8.9	4.1	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4190)
DUF2207	PF09972.4	gi|146303133|ref|YP_001190449.1|	-	1.9	7.0	6.3	2.4	6.6	2.1	2.0	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2207)
DUF95	PF01944.12	gi|146303133|ref|YP_001190449.1|	-	2.5	7.7	8.6	0.96	9.0	0.6	2.3	1	1	2	3	3	3	0	Integral	membrane	protein	DUF95
ABC2_membrane	PF01061.19	gi|146303134|ref|YP_001190450.1|	-	2e-06	27.1	23.4	2e-06	27.1	16.2	1.4	1	1	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|146303134|ref|YP_001190450.1|	-	2	7.3	36.9	0.0046	16.0	17.9	1.8	1	1	1	2	2	2	0	ABC-2	family	transporter	protein
DUF1240	PF06836.7	gi|146303134|ref|YP_001190450.1|	-	4.7	7.4	10.1	2.5	8.4	2.7	2.8	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1240)
ABC_tran	PF00005.22	gi|146303135|ref|YP_001190451.1|	-	5.7e-22	78.4	0.0	9.8e-22	77.7	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303135|ref|YP_001190451.1|	-	2.5e-11	44.0	0.0	2.2e-07	31.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146303135|ref|YP_001190451.1|	-	0.0012	18.1	0.1	0.049	12.8	0.1	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|146303135|ref|YP_001190451.1|	-	0.0027	17.1	0.1	0.0049	16.3	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|146303135|ref|YP_001190451.1|	-	0.012	15.2	0.0	0.023	14.2	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
AAA_22	PF13401.1	gi|146303135|ref|YP_001190451.1|	-	0.014	15.5	0.0	0.03	14.4	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
DUF87	PF01935.12	gi|146303135|ref|YP_001190451.1|	-	0.021	14.6	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
SbcCD_C	PF13558.1	gi|146303135|ref|YP_001190451.1|	-	0.063	13.2	0.0	0.55	10.1	0.0	2.2	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_13	PF13166.1	gi|146303135|ref|YP_001190451.1|	-	0.066	11.6	0.0	0.14	10.6	0.0	1.5	2	0	0	2	2	2	0	AAA	domain
AAA_15	PF13175.1	gi|146303135|ref|YP_001190451.1|	-	0.095	11.7	0.0	10	5.0	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
NB-ARC	PF00931.17	gi|146303135|ref|YP_001190451.1|	-	0.11	11.3	0.1	0.43	9.3	0.0	1.9	2	0	0	2	2	2	0	NB-ARC	domain
AAA_17	PF13207.1	gi|146303135|ref|YP_001190451.1|	-	0.13	13.1	0.0	0.3	11.9	0.0	1.8	1	1	1	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|146303135|ref|YP_001190451.1|	-	0.14	11.5	0.0	0.27	10.6	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
DUF1641	PF07849.6	gi|146303136|ref|YP_001190452.1|	-	4.2e-14	51.8	1.1	4.2e-14	51.8	0.8	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
ADH_zinc_N_2	PF13602.1	gi|146303136|ref|YP_001190452.1|	-	4.1e-06	27.7	0.0	0.2	12.5	0.0	3.1	2	1	1	3	3	3	2	Zinc-binding	dehydrogenase
GUCT	PF08152.7	gi|146303136|ref|YP_001190452.1|	-	0.0036	17.2	0.0	21	5.1	0.0	3.6	3	0	0	3	3	3	0	GUCT	(NUC152)	domain
SRP_SPB	PF02978.14	gi|146303136|ref|YP_001190452.1|	-	0.015	15.5	6.1	1.3	9.2	0.3	3.4	1	1	1	3	3	3	0	Signal	peptide	binding	domain
Hat1_N	PF10394.4	gi|146303136|ref|YP_001190452.1|	-	0.037	14.1	0.0	28	4.7	0.0	3.2	2	1	0	3	3	3	0	Histone	acetyl	transferase	HAT1	N-terminus
AbbA_antirepres	PF14156.1	gi|146303136|ref|YP_001190452.1|	-	0.049	13.2	0.9	8.8	6.0	0.0	3.3	3	0	0	3	3	3	0	Antirepressor	AbbA
HsdM_N	PF12161.3	gi|146303136|ref|YP_001190452.1|	-	0.053	13.9	3.4	0.39	11.1	0.2	3.0	2	1	1	3	3	3	0	HsdM	N-terminal	domain
Med19	PF10278.4	gi|146303136|ref|YP_001190452.1|	-	0.069	12.8	0.2	1.5	8.4	0.0	2.2	2	0	0	2	2	2	0	Mediator	of	RNA	pol	II	transcription	subunit	19
DUF2777	PF10949.3	gi|146303136|ref|YP_001190452.1|	-	0.082	12.5	0.7	14	5.2	0.0	2.9	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF2777)
Barstar	PF01337.13	gi|146303136|ref|YP_001190452.1|	-	0.19	11.5	1.4	2.4	8.0	0.1	3.1	3	2	2	5	5	5	0	Barstar	(barnase	inhibitor)
DUF1759	PF03564.10	gi|146303136|ref|YP_001190452.1|	-	0.44	10.3	5.2	15	5.4	0.1	3.4	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1759)
SHOCT	PF09851.4	gi|146303136|ref|YP_001190452.1|	-	0.45	10.0	3.7	1.1	8.7	0.2	2.9	3	0	0	3	3	3	0	Short	C-terminal	domain
DUF3407	PF11887.3	gi|146303136|ref|YP_001190452.1|	-	0.54	9.4	3.6	9	5.4	0.2	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3407)
Hrs_helical	PF12210.3	gi|146303136|ref|YP_001190452.1|	-	1	9.6	5.8	8.6	6.6	0.4	3.5	1	1	3	4	4	4	0	Hepatocyte	growth	factor-regulated	tyrosine	kinase	substrate
DUF1778	PF08681.6	gi|146303136|ref|YP_001190452.1|	-	1.1	9.1	5.2	14	5.6	0.1	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1778)
DUF4559	PF15112.1	gi|146303136|ref|YP_001190452.1|	-	8	5.5	7.4	14	4.7	3.3	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4559)
DrsE	PF02635.10	gi|146303137|ref|YP_001190453.1|	-	8.4e-09	35.5	0.0	9.5e-09	35.3	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.1	gi|146303137|ref|YP_001190453.1|	-	0.00011	22.0	0.0	0.18	11.5	0.0	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
Pyr_redox_2	PF07992.9	gi|146303138|ref|YP_001190454.1|	-	3.1e-14	53.3	0.0	6.9e-14	52.1	0.0	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_9	PF13454.1	gi|146303138|ref|YP_001190454.1|	-	8.7e-05	22.3	0.2	0.23	11.2	0.0	2.5	1	1	1	2	2	2	2	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|146303138|ref|YP_001190454.1|	-	0.00017	20.3	0.0	0.00056	18.6	0.0	1.7	2	0	0	2	2	2	1	Tryptophan	halogenase
GIDA	PF01134.17	gi|146303138|ref|YP_001190454.1|	-	0.00087	18.2	0.0	0.88	8.3	0.2	2.6	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|146303138|ref|YP_001190454.1|	-	0.0019	17.1	0.0	0.043	12.7	0.0	2.4	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303138|ref|YP_001190454.1|	-	0.041	13.9	0.0	0.1	12.6	0.0	1.7	1	0	0	1	1	1	0	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|146303138|ref|YP_001190454.1|	-	0.22	11.9	3.7	19	5.7	0.1	3.5	3	1	1	4	4	4	0	Pyridine	nucleotide-disulphide	oxidoreductase
TusA	PF01206.12	gi|146303139|ref|YP_001190455.1|	-	1.7e-15	56.3	0.0	2e-15	56.1	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF87	PF01935.12	gi|146303140|ref|YP_001190456.1|	-	6.8e-14	52.2	0.0	1.1e-13	51.5	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|146303140|ref|YP_001190456.1|	-	1.5e-13	50.8	0.0	9.4e-06	25.2	0.0	2.2	1	1	1	2	2	2	2	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|146303140|ref|YP_001190456.1|	-	1.7e-05	24.4	0.0	0.018	14.5	0.0	2.2	1	1	0	2	2	2	2	FtsK/SpoIIIE	family
DUF853	PF05872.7	gi|146303140|ref|YP_001190456.1|	-	4e-05	22.1	0.0	0.14	10.5	0.0	2.1	1	1	1	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
Zot	PF05707.7	gi|146303140|ref|YP_001190456.1|	-	0.00038	19.9	0.0	0.00097	18.6	0.0	1.6	1	1	0	1	1	1	1	Zonular	occludens	toxin	(Zot)
AAA_14	PF13173.1	gi|146303140|ref|YP_001190456.1|	-	0.0015	18.4	0.1	0.0067	16.3	0.1	2.1	1	1	0	1	1	1	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|146303140|ref|YP_001190456.1|	-	0.0015	17.2	0.0	0.0071	15.0	0.0	1.8	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_17	PF13207.1	gi|146303140|ref|YP_001190456.1|	-	0.0022	18.7	0.1	0.0048	17.6	0.1	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146303140|ref|YP_001190456.1|	-	0.0029	17.7	0.0	0.0059	16.7	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|146303140|ref|YP_001190456.1|	-	0.024	13.4	0.0	0.037	12.7	0.0	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_18	PF13238.1	gi|146303140|ref|YP_001190456.1|	-	0.038	14.3	0.0	0.087	13.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
Rhodanese	PF00581.15	gi|146303141|ref|YP_001190457.1|	-	5.6e-34	116.8	0.0	9.4e-19	67.8	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Voltage_CLC	PF00654.15	gi|146303142|ref|YP_001190458.1|	-	2e-89	300.1	36.1	1.2e-88	297.4	20.7	2.0	2	0	0	2	2	2	2	Voltage	gated	chloride	channel
CBS	PF00571.23	gi|146303142|ref|YP_001190458.1|	-	7.9e-18	63.9	0.1	2.8e-09	36.6	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Glyco_tranf_2_3	PF13641.1	gi|146303143|ref|YP_001190459.1|	-	3.2e-22	79.4	0.0	4.3e-22	79.0	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_2	PF00535.21	gi|146303143|ref|YP_001190459.1|	-	5.8e-16	58.6	0.0	1.2e-15	57.6	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|146303143|ref|YP_001190459.1|	-	5.6e-11	42.0	0.0	2.4e-10	40.0	0.0	2.0	2	1	0	2	2	2	1	Glycosyl	transferase	family	21
Glyco_trans_2_3	PF13632.1	gi|146303143|ref|YP_001190459.1|	-	3e-09	36.8	2.6	7.7e-09	35.5	1.8	1.9	1	1	0	1	1	1	1	Glycosyl	transferase	family	group	2
AhpC-TSA	PF00578.16	gi|146303144|ref|YP_001190460.1|	-	3.7e-38	130.0	0.1	4.3e-38	129.7	0.1	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146303144|ref|YP_001190460.1|	-	6.2e-28	97.1	0.1	7.7e-28	96.8	0.1	1.0	1	0	0	1	1	1	1	Redoxin
SCO1-SenC	PF02630.9	gi|146303144|ref|YP_001190460.1|	-	0.0028	17.2	0.2	0.008	15.8	0.2	1.8	1	1	0	1	1	1	1	SCO1/SenC
FtsJ	PF01728.14	gi|146303144|ref|YP_001190460.1|	-	0.082	12.8	0.0	0.11	12.4	0.0	1.4	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
AhpC-TSA_2	PF13911.1	gi|146303144|ref|YP_001190460.1|	-	0.096	12.6	0.0	0.66	9.9	0.0	2.0	1	1	0	1	1	1	0	AhpC/TSA	antioxidant	enzyme
Thioredoxin_8	PF13905.1	gi|146303144|ref|YP_001190460.1|	-	0.1	12.7	0.1	0.21	11.7	0.1	1.6	1	1	0	1	1	1	0	Thioredoxin-like
AA_permease_2	PF13520.1	gi|146303146|ref|YP_001190462.1|	-	6.4e-24	84.2	57.3	6.4e-24	84.2	39.7	2.0	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303146|ref|YP_001190462.1|	-	7.2e-08	31.1	56.7	7.5e-08	31.1	37.2	2.2	1	1	1	2	2	2	1	Amino	acid	permease
Oxidored_molyb	PF00174.14	gi|146303147|ref|YP_001190463.1|	-	9.8e-44	148.7	0.0	1.2e-43	148.4	0.0	1.0	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DoxD	PF04173.8	gi|146303148|ref|YP_001190464.1|	-	3.6e-67	225.2	0.6	4e-67	225.0	0.4	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.7	gi|146303148|ref|YP_001190464.1|	-	5e-08	33.2	6.7	5e-08	33.2	4.7	1.9	2	1	0	2	2	2	1	DoxX
DUF4341	PF14241.1	gi|146303148|ref|YP_001190464.1|	-	0.024	14.3	0.0	0.11	12.2	0.0	2.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4341)
DoxA	PF07680.6	gi|146303149|ref|YP_001190465.1|	-	2.5e-51	172.7	1.4	2.9e-51	172.5	1.0	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxA
GBS_Bsp-like	PF08481.5	gi|146303149|ref|YP_001190465.1|	-	0.016	15.1	0.4	0.028	14.2	0.3	1.5	1	0	0	1	1	1	0	GBS	Bsp-like	repeat
DUF2371	PF10177.4	gi|146303150|ref|YP_001190466.1|	-	3.9e-05	23.5	6.1	0.019	14.8	0.1	2.1	1	1	0	2	2	2	2	Uncharacterised	conserved	protein	(DUF2371)
OppC_N	PF12911.2	gi|146303150|ref|YP_001190466.1|	-	0.079	12.3	0.4	0.079	12.3	0.3	2.1	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF202	PF02656.10	gi|146303150|ref|YP_001190466.1|	-	0.23	11.7	6.8	1.5	9.0	4.2	2.2	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
YadA_head	PF05658.9	gi|146303150|ref|YP_001190466.1|	-	1.6	9.0	4.0	1.4	9.3	0.4	2.3	2	0	0	2	2	2	0	Head	domain	of	trimeric	autotransporter	adhesin
DUF3592	PF12158.3	gi|146303150|ref|YP_001190466.1|	-	1.7	8.4	7.5	24	4.7	5.3	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3592)
Rax2	PF12768.2	gi|146303150|ref|YP_001190466.1|	-	3.8	6.6	9.6	0.5	9.5	0.6	2.3	2	1	0	2	2	2	0	Cortical	protein	marker	for	cell	polarity
PDDEXK_1	PF12705.2	gi|146303151|ref|YP_001190467.1|	-	1.3e-05	24.6	0.4	1.6e-05	24.3	0.3	1.1	1	0	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
Cas_Cas4	PF01930.12	gi|146303151|ref|YP_001190467.1|	-	0.0002	21.3	0.1	0.0003	20.7	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_3	PF13366.1	gi|146303151|ref|YP_001190467.1|	-	0.0037	17.3	0.5	0.016	15.2	0.2	2.1	1	1	0	1	1	1	1	PD-(D/E)XK	nuclease	superfamily
XisH	PF08814.5	gi|146303151|ref|YP_001190467.1|	-	0.061	13.3	0.1	0.16	11.9	0.0	1.7	2	0	0	2	2	2	0	XisH	protein
Dna2	PF08696.6	gi|146303151|ref|YP_001190467.1|	-	0.083	12.1	0.0	0.16	11.2	0.0	1.6	1	1	0	1	1	1	0	DNA	replication	factor	Dna2
Arb2	PF09757.4	gi|146303151|ref|YP_001190467.1|	-	0.1	12.0	0.0	0.83	9.0	0.0	1.9	1	1	1	2	2	2	0	Arb2	domain
Aldedh	PF00171.17	gi|146303152|ref|YP_001190468.1|	-	5.9e-133	443.5	0.0	7.2e-133	443.2	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
LuxC	PF05893.9	gi|146303152|ref|YP_001190468.1|	-	3.2e-06	26.1	0.0	2.8e-05	23.0	0.0	2.4	1	1	0	1	1	1	1	Acyl-CoA	reductase	(LuxC)
B12-binding	PF02310.14	gi|146303152|ref|YP_001190468.1|	-	0.051	13.4	0.0	0.11	12.4	0.0	1.5	1	0	0	1	1	1	0	B12	binding	domain
DUF2285	PF10074.4	gi|146303152|ref|YP_001190468.1|	-	0.18	12.1	0.8	0.38	11.1	0.2	1.8	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2285)
Lactamase_B	PF00753.22	gi|146303154|ref|YP_001190470.1|	-	2.1e-27	96.0	3.1	2.6e-27	95.7	2.2	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146303154|ref|YP_001190470.1|	-	0.00031	20.3	0.0	0.00041	19.9	0.0	1.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|146303154|ref|YP_001190470.1|	-	0.0019	17.9	0.0	0.0024	17.5	0.0	1.3	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
DrsE_2	PF13686.1	gi|146303155|ref|YP_001190471.1|	-	1.1e-07	31.7	1.0	0.0014	18.4	0.0	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|146303155|ref|YP_001190471.1|	-	6.6e-06	26.1	0.0	7.6e-06	25.9	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DUF2370	PF10176.4	gi|146303156|ref|YP_001190472.1|	-	0.044	13.1	0.1	0.048	13.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2370)
Sulf_transp	PF04143.9	gi|146303157|ref|YP_001190473.1|	-	8.1e-16	57.7	35.9	4.1e-11	42.7	4.5	4.4	3	1	0	3	3	3	2	Sulphur	transport
VIT1	PF01988.14	gi|146303157|ref|YP_001190473.1|	-	0.023	14.1	0.8	0.023	14.1	0.5	3.8	4	1	0	5	5	5	0	VIT	family
DUF2231	PF09990.4	gi|146303157|ref|YP_001190473.1|	-	0.41	11.0	13.7	0.1	12.9	3.0	3.7	3	1	1	4	4	4	0	Predicted	membrane	protein	(DUF2231)
TusA	PF01206.12	gi|146303158|ref|YP_001190474.1|	-	4e-20	71.1	0.1	4.7e-20	70.9	0.0	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|146303158|ref|YP_001190474.1|	-	0.0014	18.1	0.0	0.0024	17.4	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
DoxD	PF04173.8	gi|146303159|ref|YP_001190475.1|	-	3.6e-50	169.9	6.7	4.5e-50	169.5	4.6	1.0	1	0	0	1	1	1	1	TQO	small	subunit	DoxD
DoxX	PF07681.7	gi|146303159|ref|YP_001190475.1|	-	3.6e-06	27.2	5.6	3.6e-06	27.2	3.9	2.1	2	0	0	2	2	2	1	DoxX
Lactonase	PF10282.4	gi|146303161|ref|YP_001190477.1|	-	2.1e-06	27.0	0.0	0.0037	16.3	0.0	2.4	1	1	1	2	2	2	2	Lactonase,	7-bladed	beta-propeller
Cytochrom_D1	PF02239.11	gi|146303161|ref|YP_001190477.1|	-	0.0047	15.2	0.0	0.17	10.1	0.0	2.2	2	0	0	2	2	2	2	Cytochrome	D1	heme	domain
DUF3439	PF11921.3	gi|146303161|ref|YP_001190477.1|	-	2.5	7.8	15.6	0.14	11.8	6.8	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3439)
DrsE	PF02635.10	gi|146303162|ref|YP_001190478.1|	-	2.7e-06	27.4	0.0	2.8e-06	27.3	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DUF3440	PF11922.3	gi|146303163|ref|YP_001190479.1|	-	0.09	12.3	0.0	7.9	5.9	0.0	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3440)
TusA	PF01206.12	gi|146303164|ref|YP_001190480.1|	-	1.6e-16	59.6	0.1	9.8e-16	57.1	0.1	2.3	3	0	0	3	3	3	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|146303164|ref|YP_001190480.1|	-	0.025	14.1	0.1	0.082	12.5	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
MacB_PCD	PF12704.2	gi|146303165|ref|YP_001190481.1|	-	0.024	14.2	1.4	0.031	13.8	1.0	1.3	1	1	0	1	1	1	0	MacB-like	periplasmic	core	domain
Rhabdo_M2	PF04785.7	gi|146303165|ref|YP_001190481.1|	-	0.04	12.9	0.2	0.054	12.5	0.1	1.1	1	0	0	1	1	1	0	Rhabdovirus	matrix	protein	M2
HemY_N	PF07219.8	gi|146303165|ref|YP_001190481.1|	-	2	8.0	4.8	3.5	7.2	3.4	1.4	1	0	0	1	1	1	0	HemY	protein	N-terminus
HpcH_HpaI	PF03328.9	gi|146303166|ref|YP_001190482.1|	-	2e-31	108.6	0.0	1.2e-29	102.7	0.0	2.1	1	1	0	1	1	1	1	HpcH/HpaI	aldolase/citrate	lyase	family
C-C_Bond_Lyase	PF15617.1	gi|146303166|ref|YP_001190482.1|	-	2.1e-11	43.2	0.0	1.3e-06	27.5	0.0	2.2	2	0	0	2	2	2	2	C-C_Bond_Lyase	of	the	TIM-Barrel	fold
AurF	PF11583.3	gi|146303168|ref|YP_001190484.1|	-	6.9e-06	25.1	1.8	1.4e-05	24.1	0.2	2.1	2	1	0	2	2	2	1	P-aminobenzoate	N-oxygenase	AurF
Rubrerythrin	PF02915.12	gi|146303168|ref|YP_001190484.1|	-	0.0015	18.8	0.0	0.0077	16.5	0.0	2.1	2	0	0	2	2	2	1	Rubrerythrin
PI3K_p85B	PF02192.11	gi|146303168|ref|YP_001190484.1|	-	0.034	13.5	0.0	0.086	12.2	0.0	1.6	1	1	0	1	1	1	0	PI3-kinase	family,	p85-binding	domain
DUF2989	PF11207.3	gi|146303168|ref|YP_001190484.1|	-	0.093	12.1	0.1	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2989)
ECH	PF00378.15	gi|146303169|ref|YP_001190485.1|	-	5.8e-72	241.7	0.4	7e-72	241.4	0.3	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
Peptidase_S49	PF01343.13	gi|146303169|ref|YP_001190485.1|	-	1e-05	25.3	0.0	0.00064	19.5	0.0	2.4	2	0	0	2	2	2	1	Peptidase	family	S49
DUF2191	PF09957.4	gi|146303169|ref|YP_001190485.1|	-	0.0012	18.6	0.4	0.02	14.7	0.1	2.7	2	1	0	2	2	2	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
PrpR_N	PF06506.6	gi|146303169|ref|YP_001190485.1|	-	0.037	13.4	0.0	0.19	11.0	0.0	2.0	2	0	0	2	2	2	0	Propionate	catabolism	activator
ECH	PF00378.15	gi|146303170|ref|YP_001190486.1|	-	1.1e-43	149.1	0.0	1.2e-43	148.9	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
ECH_C	PF13766.1	gi|146303170|ref|YP_001190486.1|	-	0.0096	16.0	0.0	0.018	15.1	0.0	1.4	1	0	0	1	1	1	1	2-enoyl-CoA	Hydratase	C-terminal	region
Thiolase_N	PF00108.18	gi|146303171|ref|YP_001190487.1|	-	9.6e-13	47.7	0.4	3.8e-10	39.1	0.0	2.2	1	1	1	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|146303171|ref|YP_001190487.1|	-	1.1e-08	34.5	0.5	7.1e-06	25.4	0.1	3.1	3	1	1	4	4	4	2	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|146303171|ref|YP_001190487.1|	-	6.7e-05	22.4	8.9	0.00016	21.2	1.6	3.0	3	1	1	4	4	4	2	Beta-ketoacyl	synthase,	N-terminal	domain
Ketoacyl-synt_C	PF02801.17	gi|146303171|ref|YP_001190487.1|	-	0.00018	21.3	2.0	0.47	10.3	0.1	3.7	4	1	0	4	4	4	2	Beta-ketoacyl	synthase,	C-terminal	domain
ACP_syn_III	PF08545.5	gi|146303171|ref|YP_001190487.1|	-	0.00075	19.1	0.4	0.061	12.9	0.3	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35	PF01796.12	gi|146303172|ref|YP_001190488.1|	-	2.6e-12	46.7	0.1	5.4e-12	45.7	0.0	1.5	1	1	1	2	2	2	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|146303172|ref|YP_001190488.1|	-	1e-11	44.3	0.5	1.6e-11	43.7	0.3	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Ribosomal_L37e	PF01907.14	gi|146303172|ref|YP_001190488.1|	-	0.065	13.0	0.5	0.12	12.1	0.3	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L37e
NMD3	PF04981.8	gi|146303172|ref|YP_001190488.1|	-	0.098	11.7	0.3	0.87	8.6	0.0	2.0	1	1	1	2	2	2	0	NMD3	family
AMP-binding	PF00501.23	gi|146303173|ref|YP_001190489.1|	-	1.4e-17	63.2	0.0	1.8e-17	62.8	0.0	1.2	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C_2	PF14535.1	gi|146303173|ref|YP_001190489.1|	-	5.2e-16	58.4	0.1	1.1e-15	57.4	0.1	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
LuxE	PF04443.7	gi|146303173|ref|YP_001190489.1|	-	0.00064	18.5	0.0	0.006	15.3	0.0	2.0	2	0	0	2	2	2	1	Acyl-protein	synthetase,	LuxE
3HCDH_N	PF02737.13	gi|146303174|ref|YP_001190490.1|	-	1e-58	197.9	0.0	1.4e-58	197.5	0.0	1.1	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|146303174|ref|YP_001190490.1|	-	1.3e-30	105.5	0.1	6.9e-24	84.0	0.0	2.7	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_binding_2	PF03446.10	gi|146303174|ref|YP_001190490.1|	-	7.3e-06	25.9	0.0	1.1e-05	25.3	0.0	1.3	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
UDPG_MGDP_dh_N	PF03721.9	gi|146303174|ref|YP_001190490.1|	-	0.00025	20.4	0.1	0.00039	19.8	0.1	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|146303174|ref|YP_001190490.1|	-	0.00038	20.0	0.1	0.00065	19.3	0.0	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146303174|ref|YP_001190490.1|	-	0.0041	16.8	0.0	0.0066	16.1	0.0	1.3	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.22	gi|146303174|ref|YP_001190490.1|	-	0.0045	17.3	0.2	0.0092	16.3	0.1	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
F420_oxidored	PF03807.12	gi|146303174|ref|YP_001190490.1|	-	0.011	16.1	0.1	0.023	15.1	0.0	1.7	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|146303174|ref|YP_001190490.1|	-	0.013	14.9	0.0	0.02	14.3	0.0	1.3	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Viral_Hsp90	PF03225.9	gi|146303174|ref|YP_001190490.1|	-	0.081	11.2	0.2	0.14	10.3	0.0	1.4	2	0	0	2	2	2	0	Viral	heat	shock	protein	Hsp90	homologue
DAO	PF01266.19	gi|146303174|ref|YP_001190490.1|	-	0.17	10.7	0.2	0.25	10.2	0.1	1.2	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
Pro_CA	PF00484.14	gi|146303175|ref|YP_001190491.1|	-	2.5e-10	40.5	0.0	3.8e-10	39.9	0.0	1.3	1	0	0	1	1	1	1	Carbonic	anhydrase
AA_permease_2	PF13520.1	gi|146303176|ref|YP_001190492.1|	-	3e-38	131.4	58.4	3.7e-38	131.1	40.5	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303176|ref|YP_001190492.1|	-	4.6e-07	28.5	46.0	5.8e-07	28.2	31.9	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Rieske	PF00355.21	gi|146303177|ref|YP_001190493.1|	-	6e-12	44.9	0.0	7.5e-12	44.6	0.0	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|146303177|ref|YP_001190493.1|	-	0.02	14.6	0.0	0.023	14.4	0.0	1.3	1	0	0	1	1	1	0	Rieske-like	[2Fe-2S]	domain
DUF723	PF05265.8	gi|146303177|ref|YP_001190493.1|	-	1.1	9.0	3.2	0.33	10.7	0.2	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF723)
CAP	PF00188.21	gi|146303178|ref|YP_001190494.1|	-	3.2e-07	30.8	0.0	4.7e-07	30.3	0.0	1.3	1	0	0	1	1	1	1	Cysteine-rich	secretory	protein	family
AMP-binding	PF00501.23	gi|146303179|ref|YP_001190495.1|	-	1.5e-91	306.8	0.0	1.8e-91	306.6	0.0	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303179|ref|YP_001190495.1|	-	4.2e-13	50.0	0.5	1.3e-12	48.4	0.1	2.0	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
Peptidase_S9	PF00326.16	gi|146303180|ref|YP_001190496.1|	-	6.4e-45	152.9	0.2	8.8e-45	152.5	0.1	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|146303180|ref|YP_001190496.1|	-	6.3e-09	35.7	0.0	1.3e-08	34.6	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|146303180|ref|YP_001190496.1|	-	2.3e-06	27.6	0.0	1.9e-05	24.6	0.0	2.0	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|146303180|ref|YP_001190496.1|	-	6.1e-06	25.6	0.0	1.7e-05	24.1	0.0	1.7	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.13	gi|146303180|ref|YP_001190496.1|	-	0.00061	19.2	0.1	0.032	13.6	0.1	2.3	1	1	1	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Abhydrolase_4	PF08386.5	gi|146303180|ref|YP_001190496.1|	-	0.015	15.1	0.0	0.034	14.0	0.0	1.5	1	0	0	1	1	1	0	TAP-like	protein
Abhydrolase_2	PF02230.11	gi|146303180|ref|YP_001190496.1|	-	0.036	13.5	0.0	0.076	12.4	0.0	1.5	1	0	0	1	1	1	0	Phospholipase/Carboxylesterase
FSH1	PF03959.8	gi|146303180|ref|YP_001190496.1|	-	0.08	12.3	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	Serine	hydrolase	(FSH1)
Thiolase_N	PF00108.18	gi|146303181|ref|YP_001190497.1|	-	5.4e-15	55.0	0.1	8e-12	44.6	0.1	2.3	2	0	0	2	2	2	2	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|146303181|ref|YP_001190497.1|	-	1.4e-08	34.1	0.1	5.9e-07	28.9	0.0	2.9	2	1	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|146303181|ref|YP_001190497.1|	-	4.1e-06	26.4	1.8	0.00012	21.7	0.4	2.5	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|146303181|ref|YP_001190497.1|	-	0.001	18.7	0.3	0.065	12.8	0.1	2.4	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
DUF35_N	PF12172.3	gi|146303182|ref|YP_001190498.1|	-	2.4e-12	46.3	0.1	4.8e-12	45.4	0.0	1.5	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|146303182|ref|YP_001190498.1|	-	1.8e-11	44.1	0.1	3e-11	43.3	0.1	1.4	1	0	0	1	1	1	1	DUF35	OB-fold	domain
Auto_anti-p27	PF06677.7	gi|146303182|ref|YP_001190498.1|	-	0.0016	18.1	2.5	0.066	12.9	2.4	2.3	1	1	1	2	2	2	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DUF2082	PF09855.4	gi|146303182|ref|YP_001190498.1|	-	0.02	14.7	0.4	0.95	9.3	0.0	2.3	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
DZR	PF12773.2	gi|146303182|ref|YP_001190498.1|	-	0.033	13.9	0.9	0.053	13.3	0.6	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-TFIIB	PF13453.1	gi|146303182|ref|YP_001190498.1|	-	0.073	12.2	0.0	4.3	6.6	0.0	2.3	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zinc_ribbon_2	PF13240.1	gi|146303182|ref|YP_001190498.1|	-	0.079	12.4	3.0	4.3	6.9	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
Cucumo_coat	PF00760.13	gi|146303182|ref|YP_001190498.1|	-	0.089	11.7	0.0	0.29	10.0	0.0	1.9	2	0	0	2	2	2	0	Cucumovirus	coat	protein
zinc_ribbon_4	PF13717.1	gi|146303182|ref|YP_001190498.1|	-	0.093	12.4	4.9	0.95	9.2	0.0	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146303182|ref|YP_001190498.1|	-	0.14	11.4	1.3	11	5.4	0.0	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
NRDD	PF13597.1	gi|146303182|ref|YP_001190498.1|	-	0.25	9.3	0.6	0.32	9.0	0.4	1.1	1	0	0	1	1	1	0	Anaerobic	ribonucleoside-triphosphate	reductase
zinc_ribbon_5	PF13719.1	gi|146303182|ref|YP_001190498.1|	-	0.4	10.3	6.7	0.88	9.2	0.0	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|146303182|ref|YP_001190498.1|	-	0.69	9.0	3.8	2.9	7.0	0.3	2.3	2	0	0	2	2	2	0	Zn-finger	in	Ran	binding	protein	and	others
ADH_N	PF08240.7	gi|146303183|ref|YP_001190499.1|	-	1.7e-20	72.7	3.9	1.5e-19	69.7	0.5	3.1	2	1	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146303183|ref|YP_001190499.1|	-	8.2e-19	67.4	0.1	1.4e-18	66.7	0.1	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146303183|ref|YP_001190499.1|	-	9.3e-14	52.4	1.3	1.3e-13	51.9	0.4	1.5	1	1	1	2	2	2	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.1	gi|146303183|ref|YP_001190499.1|	-	3.7e-05	23.7	0.4	5.3e-05	23.2	0.3	1.2	1	0	0	1	1	1	1	NADH(P)-binding
NAD_binding_7	PF13241.1	gi|146303183|ref|YP_001190499.1|	-	0.0002	21.5	0.2	0.00038	20.6	0.1	1.4	1	0	0	1	1	1	1	Putative	NAD(P)-binding
DapB_N	PF01113.15	gi|146303183|ref|YP_001190499.1|	-	0.0004	20.2	0.7	0.00066	19.6	0.5	1.4	1	0	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Epimerase	PF01370.16	gi|146303183|ref|YP_001190499.1|	-	0.00048	19.6	0.1	0.00076	18.9	0.1	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
adh_short	PF00106.20	gi|146303183|ref|YP_001190499.1|	-	0.002	18.0	0.1	0.0031	17.4	0.1	1.4	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146303183|ref|YP_001190499.1|	-	0.0041	16.8	0.1	0.0066	16.1	0.1	1.4	1	0	0	1	1	1	1	KR	domain
ELFV_dehydrog	PF00208.16	gi|146303183|ref|YP_001190499.1|	-	0.01	15.4	2.1	0.022	14.3	0.8	1.8	1	1	1	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Semialdhyde_dh	PF01118.19	gi|146303183|ref|YP_001190499.1|	-	0.033	14.4	0.2	0.079	13.2	0.1	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
NADH_4Fe-4S	PF10589.4	gi|146303183|ref|YP_001190499.1|	-	0.049	12.7	2.2	0.14	11.3	1.5	1.7	1	0	0	1	1	1	0	NADH-ubiquinone	oxidoreductase-F	iron-sulfur	binding	region
2-Hacid_dh_C	PF02826.14	gi|146303183|ref|YP_001190499.1|	-	0.065	12.3	0.2	0.11	11.6	0.1	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Oxidored_nitro	PF00148.14	gi|146303183|ref|YP_001190499.1|	-	0.071	11.7	0.0	0.12	10.9	0.0	1.3	1	1	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
AlaDh_PNT_C	PF01262.16	gi|146303183|ref|YP_001190499.1|	-	0.27	10.7	3.0	2.6	7.5	2.1	2.3	1	1	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
3HCDH_N	PF02737.13	gi|146303184|ref|YP_001190500.1|	-	1.5e-64	216.9	2.2	2.5e-64	216.2	1.5	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ECH	PF00378.15	gi|146303184|ref|YP_001190500.1|	-	1.9e-61	207.3	0.0	3.2e-61	206.5	0.0	1.4	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
3HCDH	PF00725.17	gi|146303184|ref|YP_001190500.1|	-	2.6e-43	146.3	0.0	8.1e-24	83.8	0.0	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146303184|ref|YP_001190500.1|	-	8e-07	28.9	0.8	2.8e-05	23.8	0.1	2.6	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|146303184|ref|YP_001190500.1|	-	2.1e-05	24.4	0.6	7.7e-05	22.5	0.0	2.2	3	0	0	3	3	3	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
ECH_C	PF13766.1	gi|146303184|ref|YP_001190500.1|	-	0.00031	20.8	0.1	0.0016	18.5	0.0	2.2	2	0	0	2	2	2	1	2-enoyl-CoA	Hydratase	C-terminal	region
F420_oxidored	PF03807.12	gi|146303184|ref|YP_001190500.1|	-	0.00043	20.6	0.1	0.0018	18.6	0.1	2.1	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
UDPG_MGDP_dh_N	PF03721.9	gi|146303184|ref|YP_001190500.1|	-	0.015	14.6	0.7	0.025	13.9	0.0	1.7	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Acyl-CoA_dh_1	PF00441.19	gi|146303185|ref|YP_001190501.1|	-	2.7e-41	141.1	4.1	3.9e-41	140.6	2.8	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_N	PF02771.11	gi|146303185|ref|YP_001190501.1|	-	6.2e-34	116.9	0.0	1.5e-33	115.7	0.0	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146303185|ref|YP_001190501.1|	-	9.2e-19	66.7	0.2	1.7e-18	65.8	0.2	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_2	PF08028.6	gi|146303185|ref|YP_001190501.1|	-	1.5e-14	54.4	3.5	2.3e-14	53.8	2.4	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
HpaB_N	PF11794.3	gi|146303185|ref|YP_001190501.1|	-	0.047	13.0	0.0	0.58	9.5	0.0	2.6	1	1	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
GHMP_kinases_C	PF08544.8	gi|146303185|ref|YP_001190501.1|	-	0.12	12.6	0.0	0.27	11.4	0.0	1.6	1	0	0	1	1	1	0	GHMP	kinases	C	terminal
AMP-binding	PF00501.23	gi|146303186|ref|YP_001190502.1|	-	1.2e-79	267.6	0.1	1.5e-79	267.3	0.1	1.0	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303186|ref|YP_001190502.1|	-	1.4e-16	61.2	0.0	1.1e-15	58.2	0.0	2.3	2	0	0	2	2	2	1	AMP-binding	enzyme	C-terminal	domain
DUF896	PF05979.7	gi|146303186|ref|YP_001190502.1|	-	0.0044	16.5	0.0	0.014	14.9	0.0	1.8	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF896)
APC2	PF08672.6	gi|146303186|ref|YP_001190502.1|	-	0.14	12.3	0.1	0.37	11.0	0.1	1.6	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
PmbA_TldD	PF01523.11	gi|146303187|ref|YP_001190503.1|	-	3.8e-37	128.1	0.4	7.3e-37	127.2	0.3	1.4	1	1	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.11	gi|146303188|ref|YP_001190504.1|	-	1.9e-46	158.7	0.1	2.4e-46	158.3	0.1	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
CbiA	PF01656.18	gi|146303189|ref|YP_001190505.1|	-	3.2e-07	29.9	0.0	4.8e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Saccharop_dh	PF03435.13	gi|146303189|ref|YP_001190505.1|	-	0.0072	15.3	0.1	0.034	13.1	0.1	2.1	3	0	0	3	3	3	1	Saccharopine	dehydrogenase
Fer4_NifH	PF00142.13	gi|146303189|ref|YP_001190505.1|	-	0.011	14.9	0.1	0.017	14.2	0.1	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_10	PF12846.2	gi|146303189|ref|YP_001190505.1|	-	0.014	14.8	0.0	0.015	14.7	0.0	1.1	1	0	0	1	1	1	0	AAA-like	domain
MipZ	PF09140.6	gi|146303189|ref|YP_001190505.1|	-	0.014	14.4	0.3	0.026	13.6	0.2	1.4	1	0	0	1	1	1	0	ATPase	MipZ
DUF87	PF01935.12	gi|146303189|ref|YP_001190505.1|	-	0.029	14.1	0.1	0.04	13.7	0.1	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
ArsA_ATPase	PF02374.10	gi|146303189|ref|YP_001190505.1|	-	0.12	11.3	0.6	0.21	10.6	0.4	1.3	1	0	0	1	1	1	0	Anion-transporting	ATPase
Ldh_1_N	PF00056.18	gi|146303189|ref|YP_001190505.1|	-	0.17	11.7	0.1	0.25	11.1	0.1	1.3	1	0	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
tRNA_SAD	PF07973.9	gi|146303190|ref|YP_001190506.1|	-	0.028	14.2	0.0	0.051	13.4	0.0	1.4	1	0	0	1	1	1	0	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
AMP-binding	PF00501.23	gi|146303191|ref|YP_001190507.1|	-	3.4e-77	259.5	0.0	4.4e-77	259.2	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303191|ref|YP_001190507.1|	-	1.1e-20	74.3	0.4	2.2e-20	73.3	0.3	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
MFS_1	PF07690.11	gi|146303192|ref|YP_001190508.1|	-	9.7e-49	165.9	32.6	1.3e-48	165.4	22.6	1.2	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|146303192|ref|YP_001190508.1|	-	1.3e-10	40.3	1.3	1.3e-10	40.3	0.9	2.5	1	1	1	2	2	2	2	MFS/sugar	transport	protein
DUF1228	PF06779.9	gi|146303192|ref|YP_001190508.1|	-	0.039	13.9	1.3	0.039	13.9	0.9	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1228)
ATG22	PF11700.3	gi|146303192|ref|YP_001190508.1|	-	0.058	11.8	38.4	0.12	10.8	13.7	3.1	2	1	0	2	2	2	0	Vacuole	effluxer	Atg22	like
AA_permease_2	PF13520.1	gi|146303193|ref|YP_001190509.1|	-	9.5e-32	110.0	54.4	1.7e-30	105.9	37.7	2.0	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303193|ref|YP_001190509.1|	-	1.2e-29	102.9	53.9	1.2e-29	102.9	37.4	2.3	2	1	0	2	2	2	1	Amino	acid	permease
Spore_permease	PF03845.8	gi|146303193|ref|YP_001190509.1|	-	7.4e-05	21.5	29.9	7.4e-05	21.5	20.7	1.8	1	1	1	2	2	2	1	Spore	germination	protein
AA_permease_C	PF13906.1	gi|146303193|ref|YP_001190509.1|	-	0.029	14.2	0.1	0.029	14.2	0.1	4.8	4	1	0	4	4	4	0	C-terminus	of	AA_permease
Trp_Tyr_perm	PF03222.8	gi|146303193|ref|YP_001190509.1|	-	0.82	8.4	35.3	0.15	10.8	21.8	1.6	1	1	1	2	2	2	0	Tryptophan/tyrosine	permease	family
AA_permease_2	PF13520.1	gi|146303194|ref|YP_001190510.1|	-	8.2e-27	93.7	57.7	1.1e-26	93.3	40.0	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303194|ref|YP_001190510.1|	-	5.7e-21	74.4	59.9	9.4e-21	73.6	41.4	1.4	1	1	0	1	1	1	1	Amino	acid	permease
Syndecan	PF01034.15	gi|146303194|ref|YP_001190510.1|	-	1.7	8.3	4.7	3.4	7.3	0.0	3.8	3	0	0	3	3	3	0	Syndecan	domain
PIN	PF01850.16	gi|146303196|ref|YP_001190512.1|	-	1e-10	41.9	0.1	1.2e-10	41.7	0.0	1.1	1	0	0	1	1	1	1	PIN	domain
CcdA	PF07362.7	gi|146303197|ref|YP_001190513.1|	-	0.0098	15.7	0.4	0.0098	15.7	0.3	1.6	2	0	0	2	2	2	1	Post-segregation	antitoxin	CcdA
RHH_1	PF01402.16	gi|146303197|ref|YP_001190513.1|	-	1.2	9.1	4.9	4.1	7.4	1.6	2.7	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
DUF3802	PF12290.3	gi|146303199|ref|YP_001190515.1|	-	0.0016	18.7	0.0	0.0018	18.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3802)
Oxidored_FMN	PF00724.15	gi|146303200|ref|YP_001190516.1|	-	7.8e-64	215.8	0.0	1.1e-63	215.3	0.0	1.1	1	0	0	1	1	1	1	NADH:flavin	oxidoreductase	/	NADH	oxidase	family
Pyr_redox	PF00070.22	gi|146303200|ref|YP_001190516.1|	-	4e-09	36.7	1.5	4.9e-08	33.2	0.5	2.7	2	1	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303200|ref|YP_001190516.1|	-	1.7e-08	34.3	0.0	3.7e-08	33.2	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|146303200|ref|YP_001190516.1|	-	2.9e-06	26.4	0.0	5.5e-06	25.5	0.0	1.5	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|146303200|ref|YP_001190516.1|	-	4.4e-05	22.5	0.2	6.3e-05	22.0	0.1	1.2	1	0	0	1	1	1	1	FAD	binding	domain
GIDA	PF01134.17	gi|146303200|ref|YP_001190516.1|	-	0.00017	20.5	0.1	0.00024	20.0	0.1	1.2	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.12	gi|146303200|ref|YP_001190516.1|	-	0.00028	20.0	0.2	0.00057	19.0	0.2	1.4	1	0	0	1	1	1	1	Thi4	family
Pyr_redox_3	PF13738.1	gi|146303200|ref|YP_001190516.1|	-	0.00034	20.7	0.2	0.0059	16.6	0.1	2.1	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|146303200|ref|YP_001190516.1|	-	0.00038	19.6	0.2	0.00063	18.9	0.2	1.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303200|ref|YP_001190516.1|	-	0.00053	19.1	0.5	0.00092	18.3	0.3	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146303200|ref|YP_001190516.1|	-	0.00071	19.5	0.0	0.0012	18.7	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Amino_oxidase	PF01593.19	gi|146303200|ref|YP_001190516.1|	-	0.0011	18.2	0.0	0.0017	17.4	0.0	1.3	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
HI0933_like	PF03486.9	gi|146303200|ref|YP_001190516.1|	-	0.0017	16.9	0.1	0.005	15.3	0.0	1.7	2	0	0	2	2	2	1	HI0933-like	protein
Dus	PF01207.12	gi|146303200|ref|YP_001190516.1|	-	0.002	17.0	0.0	0.007	15.2	0.0	1.8	1	1	1	2	2	2	1	Dihydrouridine	synthase	(Dus)
3HCDH_N	PF02737.13	gi|146303200|ref|YP_001190516.1|	-	0.018	14.6	0.0	0.031	13.9	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
BtpA	PF03437.10	gi|146303200|ref|YP_001190516.1|	-	0.079	12.2	0.0	2.5	7.2	0.0	2.3	2	0	0	2	2	2	0	BtpA	family
MFS_1	PF07690.11	gi|146303201|ref|YP_001190517.1|	-	8.7e-29	100.3	44.2	5.4e-19	68.1	15.3	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303201|ref|YP_001190517.1|	-	1.5e-20	73.2	24.6	1.8e-15	56.4	3.8	2.8	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
TRI12	PF06609.8	gi|146303201|ref|YP_001190517.1|	-	0.00066	18.0	9.6	0.00076	17.8	2.2	2.3	1	1	1	2	2	2	2	Fungal	trichothecene	efflux	pump	(TRI12)
Imm_superinfect	PF14373.1	gi|146303201|ref|YP_001190517.1|	-	0.0017	17.9	2.4	0.014	15.0	0.2	2.9	2	0	0	2	2	2	1	Superinfection	immunity	protein
MFS_1	PF07690.11	gi|146303202|ref|YP_001190518.1|	-	1.7e-26	92.8	67.5	2.9e-22	78.8	32.3	2.3	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|146303202|ref|YP_001190518.1|	-	1.1e-06	27.1	4.9	1.1e-06	27.1	3.4	2.1	2	0	0	2	2	2	2	Transmembrane	secretion	effector
DUF72	PF01904.13	gi|146303203|ref|YP_001190519.1|	-	5.7e-42	144.0	1.1	7.1e-42	143.7	0.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF72
Antimicrobial20	PF08256.6	gi|146303203|ref|YP_001190519.1|	-	0.33	11.3	2.8	1	9.8	0.6	2.4	2	0	0	2	2	2	0	Aurein-like	antibiotic	peptide
MFS_1	PF07690.11	gi|146303204|ref|YP_001190520.1|	-	7.2e-21	74.2	60.8	6.5e-13	48.1	18.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|146303204|ref|YP_001190520.1|	-	1e-06	27.4	18.9	1e-06	27.4	13.1	3.2	2	1	0	3	3	3	2	MFS/sugar	transport	protein
MFS_1	PF07690.11	gi|146303205|ref|YP_001190521.1|	-	1.1e-20	73.6	49.3	2.4e-20	72.5	29.2	2.1	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|146303205|ref|YP_001190521.1|	-	8.6e-06	24.4	28.1	0.00012	20.6	13.6	2.3	1	1	0	2	2	2	2	MFS/sugar	transport	protein
MFS_3	PF05977.8	gi|146303205|ref|YP_001190521.1|	-	0.0053	14.9	15.1	0.053	11.6	0.2	2.2	2	0	0	2	2	2	2	Transmembrane	secretion	effector
SoxE	PF06525.6	gi|146303206|ref|YP_001190522.1|	-	0.0083	15.4	0.9	0.011	15.0	0.6	1.2	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)
DUF3185	PF11381.3	gi|146303206|ref|YP_001190522.1|	-	0.013	15.2	0.3	0.013	15.2	0.2	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF3185)
DUF3592	PF12158.3	gi|146303206|ref|YP_001190522.1|	-	0.13	12.0	0.7	2	8.1	0.5	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3592)
DUF1404	PF07185.6	gi|146303206|ref|YP_001190522.1|	-	0.13	11.8	2.2	0.11	12.0	0.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1404)
DUF1469	PF07332.6	gi|146303206|ref|YP_001190522.1|	-	1.1	9.0	4.6	2.3	7.9	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1469)
CRPA	PF05745.6	gi|146303206|ref|YP_001190522.1|	-	1.6	8.5	4.0	8.6	6.1	0.7	2.1	2	0	0	2	2	2	0	Chlamydia	15	kDa	cysteine-rich	outer	membrane	protein	(CRPA)
TusA	PF01206.12	gi|146303207|ref|YP_001190523.1|	-	1.1e-13	50.5	0.0	3.1e-13	49.1	0.0	1.8	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Molybdopterin	PF00384.17	gi|146303208|ref|YP_001190524.1|	-	2e-11	43.2	0.0	1.3e-08	34.0	0.0	2.1	2	0	0	2	2	2	2	Molybdopterin	oxidoreductase
PAP2	PF01569.16	gi|146303210|ref|YP_001190526.1|	-	1.7e-22	79.4	4.4	1.7e-22	79.4	3.1	1.7	2	0	0	2	2	2	1	PAP2	superfamily
PAP2_C	PF14360.1	gi|146303210|ref|YP_001190526.1|	-	0.012	15.8	1.0	0.012	15.8	0.7	2.5	2	1	0	2	2	2	0	PAP2	superfamily	C-terminal
VanZ	PF04892.7	gi|146303210|ref|YP_001190526.1|	-	0.25	11.3	3.4	0.45	10.4	2.4	1.4	1	0	0	1	1	1	0	VanZ	like	family
PAP2_3	PF14378.1	gi|146303210|ref|YP_001190526.1|	-	0.27	10.7	7.7	0.97	8.9	5.3	1.9	1	1	0	1	1	1	0	PAP2	superfamily
Sugar_tr	PF00083.19	gi|146303211|ref|YP_001190527.1|	-	3.6e-47	160.9	19.7	5.7e-47	160.3	13.6	1.3	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303211|ref|YP_001190527.1|	-	3.9e-33	114.6	49.6	7.6e-29	100.5	17.6	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1129	PF06570.6	gi|146303211|ref|YP_001190527.1|	-	3.3	6.9	9.4	0.12	11.6	1.6	2.2	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1129)
RNA_pol_Rpb5_C	PF01191.14	gi|146303212|ref|YP_001190528.1|	-	0.0095	15.5	0.0	0.019	14.5	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	Rpb5,	C-terminal	domain
FMN_red	PF03358.10	gi|146303213|ref|YP_001190529.1|	-	6.3e-18	64.7	0.0	8.7e-18	64.2	0.0	1.1	1	0	0	1	1	1	1	NADPH-dependent	FMN	reductase
Flavodoxin_2	PF02525.12	gi|146303213|ref|YP_001190529.1|	-	1.1e-07	31.5	0.0	2.5e-06	27.1	0.0	2.0	2	0	0	2	2	2	1	Flavodoxin-like	fold
Flavodoxin_5	PF12724.2	gi|146303213|ref|YP_001190529.1|	-	2.5e-06	27.5	0.0	6.8e-06	26.1	0.0	1.7	2	1	0	2	2	2	1	Flavodoxin	domain
Flavodoxin_1	PF00258.20	gi|146303213|ref|YP_001190529.1|	-	0.006	16.5	0.1	1.6	8.7	0.0	2.4	1	1	1	2	2	2	2	Flavodoxin
Transketolase_C	PF02780.15	gi|146303213|ref|YP_001190529.1|	-	0.02	14.8	0.2	0.042	13.7	0.0	1.6	2	0	0	2	2	2	0	Transketolase,	C-terminal	domain
DFP	PF04127.10	gi|146303213|ref|YP_001190529.1|	-	0.13	11.8	0.1	0.21	11.1	0.0	1.2	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
DUF3834	PF12916.2	gi|146303214|ref|YP_001190530.1|	-	2.2e-82	274.9	0.3	2.7e-82	274.6	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3834)
SBP_bac_3	PF00497.15	gi|146303214|ref|YP_001190530.1|	-	0.0043	16.3	0.0	0.0092	15.2	0.0	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	3
NMT1	PF09084.6	gi|146303214|ref|YP_001190530.1|	-	0.078	12.5	0.0	2.7	7.5	0.0	2.2	2	0	0	2	2	2	0	NMT1/THI5	like
Isochorismatase	PF00857.15	gi|146303215|ref|YP_001190531.1|	-	3.6e-36	124.7	0.0	4.1e-36	124.5	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
GAS	PF13851.1	gi|146303215|ref|YP_001190531.1|	-	0.057	12.6	0.0	0.075	12.2	0.0	1.1	1	0	0	1	1	1	0	Growth-arrest	specific	micro-tubule	binding
PPDK_N	PF01326.14	gi|146303216|ref|YP_001190532.1|	-	2e-68	230.8	0.0	2.5e-68	230.5	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
TPP_enzyme_N	PF02776.13	gi|146303217|ref|YP_001190533.1|	-	5.7e-41	139.8	0.0	1.3e-40	138.6	0.0	1.5	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|146303217|ref|YP_001190533.1|	-	3.1e-12	46.3	0.9	4.6e-12	45.7	0.0	1.7	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|146303217|ref|YP_001190533.1|	-	1.1e-06	28.4	0.0	1.1e-05	25.2	0.0	2.5	2	1	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	central	domain
Colicin_V	PF02674.11	gi|146303218|ref|YP_001190534.1|	-	0.0041	16.9	7.8	0.0041	16.9	5.4	2.8	2	1	0	2	2	2	1	Colicin	V	production	protein
Colicin	PF01024.14	gi|146303218|ref|YP_001190534.1|	-	0.07	12.7	1.8	0.12	11.9	1.2	1.4	1	0	0	1	1	1	0	Colicin	pore	forming	domain
Epimerase	PF01370.16	gi|146303219|ref|YP_001190535.1|	-	1.8e-12	47.1	0.0	2.5e-12	46.7	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_4	PF07993.7	gi|146303219|ref|YP_001190535.1|	-	9.1e-08	31.3	0.0	1.1e-07	31.0	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
zf-ribbon_3	PF13248.1	gi|146303220|ref|YP_001190536.1|	-	1.1e-17	62.6	15.7	2.3e-09	36.1	3.5	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146303220|ref|YP_001190536.1|	-	6.3e-15	54.1	15.6	5.8e-08	31.9	4.4	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|146303220|ref|YP_001190536.1|	-	6.5e-14	51.4	12.1	1.8e-13	50.0	8.4	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
UPF0547	PF10571.4	gi|146303220|ref|YP_001190536.1|	-	2.1e-07	30.4	13.8	0.0012	18.4	1.8	2.4	2	0	0	2	2	2	2	Uncharacterised	protein	family	UPF0547
zf-NADH-PPase	PF09297.6	gi|146303220|ref|YP_001190536.1|	-	0.0017	17.8	13.4	0.39	10.2	0.0	4.2	3	1	1	4	4	4	3	NADH	pyrophosphatase	zinc	ribbon	domain
PolC_DP2	PF03833.8	gi|146303220|ref|YP_001190536.1|	-	0.014	13.0	5.7	0.018	12.7	4.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	II	large	subunit	DP2
zf-DHHC	PF01529.15	gi|146303220|ref|YP_001190536.1|	-	0.075	12.4	13.5	0.3	10.4	0.8	2.3	1	1	1	2	2	2	0	DHHC	palmitoyltransferase
Nudix_N_2	PF14803.1	gi|146303220|ref|YP_001190536.1|	-	0.21	11.2	19.7	0.47	10.1	0.2	4.1	4	0	0	4	4	4	0	Nudix	N-terminal
Prok-RING_1	PF14446.1	gi|146303220|ref|YP_001190536.1|	-	0.78	9.5	10.8	0.33	10.7	0.6	2.9	1	1	1	3	3	3	0	Prokaryotic	RING	finger	family	1
NMD3	PF04981.8	gi|146303220|ref|YP_001190536.1|	-	1.3	8.0	4.3	17	4.4	3.0	2.1	1	1	0	1	1	1	0	NMD3	family
RecR	PF02132.10	gi|146303220|ref|YP_001190536.1|	-	1.3	8.5	5.0	4	6.9	0.6	2.6	2	0	0	2	2	2	0	RecR	protein
NOB1_Zn_bind	PF08772.6	gi|146303220|ref|YP_001190536.1|	-	3.4	7.5	13.0	0.83	9.5	1.4	2.7	1	1	1	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.6	gi|146303220|ref|YP_001190536.1|	-	4.4	7.0	16.4	1.7e+03	-1.3	10.6	3.1	2	1	0	2	2	2	0	Putative	transposase	DNA-binding	domain
DUF35_N	PF12172.3	gi|146303220|ref|YP_001190536.1|	-	8.5	6.4	11.8	14	5.7	2.0	2.5	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
FAD_binding_4	PF01565.18	gi|146303221|ref|YP_001190537.1|	-	6.3e-45	152.0	0.0	1.3e-44	151.0	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.14	gi|146303221|ref|YP_001190537.1|	-	2e-43	148.5	0.1	2.7e-43	148.0	0.0	1.1	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
MFS_1	PF07690.11	gi|146303222|ref|YP_001190538.1|	-	6.5e-19	67.8	37.0	1.5e-12	46.9	9.5	3.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|146303222|ref|YP_001190538.1|	-	1.1e-05	23.7	0.5	0.0001	20.5	0.0	2.2	2	0	0	2	2	2	1	Transmembrane	secretion	effector
Sugar_tr	PF00083.19	gi|146303222|ref|YP_001190538.1|	-	0.035	12.7	15.3	0.24	9.9	1.6	2.8	1	1	1	2	2	2	0	Sugar	(and	other)	transporter
ADH_N	PF08240.7	gi|146303223|ref|YP_001190539.1|	-	5.3e-27	93.7	0.1	1.1e-26	92.6	0.1	1.6	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146303223|ref|YP_001190539.1|	-	7.3e-22	77.3	0.1	1.3e-21	76.4	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146303223|ref|YP_001190539.1|	-	1.5e-10	42.0	0.1	2.9e-10	41.1	0.1	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|146303223|ref|YP_001190539.1|	-	3.2e-05	23.5	0.8	5e-05	22.9	0.2	1.6	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
SIS_2	PF13580.1	gi|146303223|ref|YP_001190539.1|	-	0.011	15.5	0.8	0.15	11.7	0.1	2.2	2	0	0	2	2	2	0	SIS	domain
Complex1_LYR	PF05347.10	gi|146303223|ref|YP_001190539.1|	-	0.012	15.3	0.1	0.021	14.6	0.1	1.4	1	0	0	1	1	1	0	Complex	1	protein	(LYR	family)
adh_short	PF00106.20	gi|146303223|ref|YP_001190539.1|	-	0.069	13.0	0.1	0.13	12.1	0.1	1.5	1	0	0	1	1	1	0	short	chain	dehydrogenase
DUF2314	PF10077.4	gi|146303223|ref|YP_001190539.1|	-	0.097	12.7	0.0	0.22	11.5	0.0	1.6	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2314)
FAD_binding_7	PF03441.9	gi|146303224|ref|YP_001190540.1|	-	5.1e-89	298.1	1.0	7.1e-89	297.6	0.7	1.2	1	0	0	1	1	1	1	FAD	binding	domain	of	DNA	photolyase
DNA_photolyase	PF00875.13	gi|146303224|ref|YP_001190540.1|	-	5.5e-37	127.0	0.3	6e-36	123.6	0.0	2.1	2	0	0	2	2	2	1	DNA	photolyase
Peptidase_S9	PF00326.16	gi|146303225|ref|YP_001190541.1|	-	7.2e-42	143.0	0.0	1.3e-41	142.1	0.0	1.4	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|146303225|ref|YP_001190541.1|	-	3.6e-14	52.7	0.0	7.5e-14	51.7	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|146303225|ref|YP_001190541.1|	-	5.7e-14	52.5	0.0	7.5e-13	48.8	0.0	2.3	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
DLH	PF01738.13	gi|146303225|ref|YP_001190541.1|	-	5.6e-11	42.1	0.0	2.7e-10	39.9	0.0	2.0	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S15	PF02129.13	gi|146303225|ref|YP_001190541.1|	-	5.3e-07	29.3	0.0	0.00024	20.6	0.1	2.4	1	1	1	2	2	2	2	X-Pro	dipeptidyl-peptidase	(S15	family)
BAAT_C	PF08840.6	gi|146303225|ref|YP_001190541.1|	-	4.2e-06	26.6	0.0	0.0009	19.0	0.0	2.2	1	1	0	1	1	1	1	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_3	PF07859.8	gi|146303225|ref|YP_001190541.1|	-	0.00024	20.7	0.0	0.0021	17.6	0.0	2.4	1	1	0	1	1	1	1	alpha/beta	hydrolase	fold
Esterase	PF00756.15	gi|146303225|ref|YP_001190541.1|	-	0.00037	20.0	0.0	0.00095	18.6	0.0	1.7	2	0	0	2	2	2	1	Putative	esterase
Abhydrolase_4	PF08386.5	gi|146303225|ref|YP_001190541.1|	-	0.00045	20.0	0.0	0.0013	18.5	0.0	1.7	2	0	0	2	2	1	1	TAP-like	protein
Hydrolase_4	PF12146.3	gi|146303225|ref|YP_001190541.1|	-	0.0005	19.8	0.3	0.013	15.3	0.1	2.5	2	0	0	2	2	2	1	Putative	lysophospholipase
Abhydrolase_1	PF00561.15	gi|146303225|ref|YP_001190541.1|	-	0.0017	17.9	0.0	0.013	15.0	0.0	2.1	1	1	1	2	2	2	1	alpha/beta	hydrolase	fold
AXE1	PF05448.7	gi|146303225|ref|YP_001190541.1|	-	0.0026	16.3	0.0	0.0084	14.6	0.0	1.8	1	1	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
DPPIV_N	PF00930.16	gi|146303225|ref|YP_001190541.1|	-	0.0068	15.0	0.0	0.014	14.0	0.0	1.6	1	0	0	1	1	1	1	Dipeptidyl	peptidase	IV	(DPP	IV)	N-terminal	region
DUF2048	PF09752.4	gi|146303225|ref|YP_001190541.1|	-	0.0099	14.7	0.0	0.015	14.1	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2048)
TFIIA_gamma_N	PF02268.11	gi|146303225|ref|YP_001190541.1|	-	0.039	13.5	0.0	0.12	11.9	0.0	1.8	2	0	0	2	2	2	0	Transcription	initiation	factor	IIA,	gamma	subunit,	helical	domain
Tannase	PF07519.6	gi|146303225|ref|YP_001190541.1|	-	0.042	12.5	0.0	0.084	11.5	0.0	1.4	1	0	0	1	1	1	0	Tannase	and	feruloyl	esterase
DUF829	PF05705.9	gi|146303225|ref|YP_001190541.1|	-	0.085	12.5	0.0	0.16	11.6	0.0	1.5	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF829)
PhoPQ_related	PF10142.4	gi|146303225|ref|YP_001190541.1|	-	0.13	10.6	0.0	0.94	7.8	0.0	1.9	1	1	1	2	2	2	0	PhoPQ-activated	pathogenicity-related	protein
Peptidase_S28	PF05577.7	gi|146303225|ref|YP_001190541.1|	-	0.23	10.0	0.0	0.35	9.4	0.0	1.2	1	0	0	1	1	1	0	Serine	carboxypeptidase	S28
SBP_bac_5	PF00496.17	gi|146303226|ref|YP_001190542.1|	-	4.1e-26	91.6	14.7	5.8e-14	51.7	1.5	2.2	2	0	0	2	2	2	2	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Rifin_STEVOR	PF02009.11	gi|146303226|ref|YP_001190542.1|	-	0.2	11.2	4.8	0.34	10.5	3.3	1.2	1	0	0	1	1	1	0	Rifin/stevor	family
Protocadherin	PF08374.6	gi|146303226|ref|YP_001190542.1|	-	0.33	10.5	6.1	0.16	11.6	2.8	1.5	2	0	0	2	2	2	0	Protocadherin
IncA	PF04156.9	gi|146303227|ref|YP_001190543.1|	-	0.012	15.2	2.9	0.026	14.1	2.0	1.5	1	0	0	1	1	1	0	IncA	protein
BPD_transp_1	PF00528.17	gi|146303228|ref|YP_001190544.1|	-	1.2e-29	103.0	17.7	1.2e-29	103.0	12.2	1.6	1	1	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|146303229|ref|YP_001190545.1|	-	1.2e-20	73.8	17.0	1.2e-20	73.8	11.8	2.4	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|146303229|ref|YP_001190545.1|	-	0.00015	21.0	2.3	0.00015	21.0	1.6	3.3	4	0	0	4	4	4	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.22	gi|146303230|ref|YP_001190546.1|	-	8.1e-26	90.9	0.0	1.2e-25	90.4	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146303230|ref|YP_001190546.1|	-	9.2e-24	83.5	0.1	1.6e-23	82.7	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146303230|ref|YP_001190546.1|	-	7.3e-07	29.4	0.0	3.1e-05	24.0	0.0	2.1	1	1	1	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|146303230|ref|YP_001190546.1|	-	6e-05	22.3	1.9	0.0015	17.7	1.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|146303230|ref|YP_001190546.1|	-	0.0002	21.5	0.7	0.0024	18.0	0.5	2.1	1	1	0	1	1	1	1	AAA	domain
PRK	PF00485.13	gi|146303230|ref|YP_001190546.1|	-	0.00027	20.5	0.0	0.00051	19.6	0.0	1.5	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_16	PF13191.1	gi|146303230|ref|YP_001190546.1|	-	0.0017	18.3	0.1	0.0031	17.5	0.1	1.7	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|146303230|ref|YP_001190546.1|	-	0.0043	16.2	0.0	0.0078	15.4	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_29	PF13555.1	gi|146303230|ref|YP_001190546.1|	-	0.0059	16.1	0.0	0.011	15.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_10	PF12846.2	gi|146303230|ref|YP_001190546.1|	-	0.012	15.0	0.3	0.28	10.5	0.1	2.1	1	1	1	2	2	2	0	AAA-like	domain
AAA_5	PF07728.9	gi|146303230|ref|YP_001190546.1|	-	0.013	15.2	0.0	0.025	14.2	0.0	1.7	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
NB-ARC	PF00931.17	gi|146303230|ref|YP_001190546.1|	-	0.018	13.8	0.0	0.038	12.8	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
AAA_25	PF13481.1	gi|146303230|ref|YP_001190546.1|	-	0.025	13.9	0.3	0.086	12.2	0.0	1.9	1	1	2	3	3	3	0	AAA	domain
DUF87	PF01935.12	gi|146303230|ref|YP_001190546.1|	-	0.029	14.1	0.1	0.33	10.7	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
ArgK	PF03308.11	gi|146303230|ref|YP_001190546.1|	-	0.046	12.4	0.0	0.082	11.6	0.0	1.3	1	0	0	1	1	1	0	ArgK	protein
NTPase_1	PF03266.10	gi|146303230|ref|YP_001190546.1|	-	0.068	12.8	0.5	0.4	10.3	0.1	2.2	2	0	0	2	2	2	0	NTPase
Rad17	PF03215.10	gi|146303230|ref|YP_001190546.1|	-	0.069	11.8	0.0	0.11	11.1	0.0	1.3	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
SopE_GEF	PF07487.8	gi|146303230|ref|YP_001190546.1|	-	0.073	13.0	0.0	0.12	12.2	0.0	1.4	1	1	0	1	1	1	0	SopE	GEF	domain
RNA_helicase	PF00910.17	gi|146303230|ref|YP_001190546.1|	-	0.1	12.7	0.0	0.23	11.6	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
Sigma54_activat	PF00158.21	gi|146303230|ref|YP_001190546.1|	-	0.11	11.9	0.1	0.39	10.1	0.0	1.9	2	1	0	2	2	1	0	Sigma-54	interaction	domain
MMR_HSR1	PF01926.18	gi|146303230|ref|YP_001190546.1|	-	0.11	12.4	0.0	0.3	11.0	0.0	1.8	2	1	0	2	2	2	0	50S	ribosome-binding	GTPase
Septin	PF00735.13	gi|146303230|ref|YP_001190546.1|	-	0.12	11.3	0.0	0.19	10.6	0.0	1.3	1	0	0	1	1	1	0	Septin
Viral_helicase1	PF01443.13	gi|146303230|ref|YP_001190546.1|	-	0.14	11.6	0.0	0.24	10.9	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
ABC_tran	PF00005.22	gi|146303231|ref|YP_001190547.1|	-	9.4e-29	100.4	0.0	1.3e-28	100.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146303231|ref|YP_001190547.1|	-	3.1e-16	59.4	0.1	5.3e-16	58.7	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146303231|ref|YP_001190547.1|	-	3e-08	34.0	0.2	0.0042	17.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_18	PF13238.1	gi|146303231|ref|YP_001190547.1|	-	5.3e-05	23.5	0.2	9.1e-05	22.7	0.1	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146303231|ref|YP_001190547.1|	-	0.00011	22.3	0.4	0.00084	19.4	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146303231|ref|YP_001190547.1|	-	0.0006	19.1	0.2	0.0023	17.1	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
NB-ARC	PF00931.17	gi|146303231|ref|YP_001190547.1|	-	0.0014	17.5	0.1	0.002	17.0	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
MobB	PF03205.9	gi|146303231|ref|YP_001190547.1|	-	0.0032	17.1	0.0	0.0051	16.5	0.0	1.4	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|146303231|ref|YP_001190547.1|	-	0.0034	18.1	0.0	0.006	17.3	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|146303231|ref|YP_001190547.1|	-	0.011	15.7	0.1	0.014	15.3	0.1	1.4	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146303231|ref|YP_001190547.1|	-	0.012	15.1	0.1	0.021	14.3	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
PRK	PF00485.13	gi|146303231|ref|YP_001190547.1|	-	0.064	12.8	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
T2SE	PF00437.15	gi|146303231|ref|YP_001190547.1|	-	0.072	11.9	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
DUF258	PF03193.11	gi|146303231|ref|YP_001190547.1|	-	0.097	11.8	0.1	0.16	11.1	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_10	PF12846.2	gi|146303231|ref|YP_001190547.1|	-	0.13	11.6	0.8	0.43	9.9	0.3	2.0	1	1	1	2	2	2	0	AAA-like	domain
NACHT	PF05729.7	gi|146303231|ref|YP_001190547.1|	-	0.14	11.8	0.1	0.22	11.1	0.0	1.3	1	0	0	1	1	1	0	NACHT	domain
AAA_23	PF13476.1	gi|146303231|ref|YP_001190547.1|	-	0.23	11.7	2.7	0.55	10.5	1.9	1.7	1	1	0	1	1	1	0	AAA	domain
KaiC	PF06745.8	gi|146303231|ref|YP_001190547.1|	-	0.36	9.9	1.8	0.42	9.6	0.0	1.9	3	0	0	3	3	3	0	KaiC
zf-CCCH_2	PF14608.1	gi|146303231|ref|YP_001190547.1|	-	0.37	10.8	4.0	0.67	10.0	2.8	1.4	1	0	0	1	1	1	0	Zinc	finger	C-x8-C-x5-C-x3-H	type
UbiA	PF01040.13	gi|146303232|ref|YP_001190548.1|	-	0.00026	20.2	1.7	0.00031	20.0	1.2	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
FA_desaturase	PF00487.19	gi|146303232|ref|YP_001190548.1|	-	0.0088	15.5	5.0	0.079	12.3	2.9	2.0	1	1	1	2	2	2	1	Fatty	acid	desaturase
MerT	PF02411.10	gi|146303232|ref|YP_001190548.1|	-	0.014	15.2	0.6	0.021	14.6	0.4	1.3	1	0	0	1	1	1	0	MerT	mercuric	transport	protein
DUF454	PF04304.8	gi|146303232|ref|YP_001190548.1|	-	0.033	14.2	4.7	0.096	12.7	0.8	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF454)
SecE	PF00584.15	gi|146303232|ref|YP_001190548.1|	-	0.096	12.2	0.8	2.6	7.6	0.0	2.5	2	0	0	2	2	2	0	SecE/Sec61-gamma	subunits	of	protein	translocation	complex
zinc_ribbon_2	PF13240.1	gi|146303233|ref|YP_001190549.1|	-	8.8e-11	40.9	11.0	2.3e-05	23.7	2.8	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
DZR	PF12773.2	gi|146303233|ref|YP_001190549.1|	-	7.1e-10	38.5	8.2	1.1e-09	37.9	5.7	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|146303233|ref|YP_001190549.1|	-	6e-08	31.6	11.0	0.00078	18.5	0.7	2.2	2	0	0	2	2	2	2	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|146303233|ref|YP_001190549.1|	-	0.0001	21.3	8.3	0.05	12.7	0.3	2.2	2	0	0	2	2	2	2	Zn-finger	in	Ran	binding	protein	and	others
DUF973	PF06157.6	gi|146303233|ref|YP_001190549.1|	-	0.00016	20.7	18.6	0.00032	19.7	12.9	1.4	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
YtpI	PF14007.1	gi|146303233|ref|YP_001190549.1|	-	0.3	11.0	3.7	0.9	9.5	0.0	2.7	2	1	0	2	2	2	0	YtpI-like	protein
zf-tcix	PF14952.1	gi|146303233|ref|YP_001190549.1|	-	0.3	10.4	12.8	0.39	10.0	1.4	2.2	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zf-C4pol	PF14260.1	gi|146303233|ref|YP_001190549.1|	-	0.38	10.7	4.9	2	8.4	0.1	2.2	2	0	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
NMD3	PF04981.8	gi|146303233|ref|YP_001190549.1|	-	1.3	8.0	8.5	4.3	6.3	1.1	2.1	2	0	0	2	2	2	0	NMD3	family
DUF2616	PF11077.3	gi|146303233|ref|YP_001190549.1|	-	2.7	7.4	6.3	6.9	6.1	1.4	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2616)
OrfB_Zn_ribbon	PF07282.6	gi|146303233|ref|YP_001190549.1|	-	3.2	7.4	12.4	3.7	7.2	1.4	2.4	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
UPF0547	PF10571.4	gi|146303233|ref|YP_001190549.1|	-	4.8	6.9	18.1	0.33	10.6	0.6	3.0	2	2	1	3	3	3	0	Uncharacterised	protein	family	UPF0547
LigB	PF02900.13	gi|146303234|ref|YP_001190550.1|	-	3.6e-56	190.1	0.0	4e-56	189.9	0.0	1.0	1	0	0	1	1	1	1	Catalytic	LigB	subunit	of	aromatic	ring-opening	dioxygenase
DrsE	PF02635.10	gi|146303235|ref|YP_001190551.1|	-	2e-14	53.6	0.0	2.3e-14	53.5	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
Nramp	PF01566.13	gi|146303236|ref|YP_001190552.1|	-	2.3e-42	145.1	23.6	3e-42	144.7	16.4	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
Peptidase_M50B	PF13398.1	gi|146303236|ref|YP_001190552.1|	-	0.0037	16.6	7.5	0.0037	16.6	5.2	2.7	3	0	0	3	3	3	1	Peptidase	M50B-like
DUF2418	PF10332.4	gi|146303236|ref|YP_001190552.1|	-	5.9	7.2	5.6	7.9	6.8	0.1	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2418)
Aldo_ket_red	PF00248.16	gi|146303237|ref|YP_001190553.1|	-	3.6e-69	232.7	0.0	4.1e-69	232.5	0.0	1.0	1	0	0	1	1	1	1	Aldo/keto	reductase	family
Sigma70_r3	PF04539.11	gi|146303237|ref|YP_001190553.1|	-	0.08	12.8	0.1	0.36	10.7	0.0	2.1	2	0	0	2	2	2	0	Sigma-70	region	3
CbiA	PF01656.18	gi|146303238|ref|YP_001190554.1|	-	3.6e-11	42.8	0.0	4.8e-11	42.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146303238|ref|YP_001190554.1|	-	1.5e-06	28.2	0.0	5.4e-06	26.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303238|ref|YP_001190554.1|	-	1.1e-05	24.6	1.5	2.5e-05	23.4	0.2	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
YhjQ	PF06564.7	gi|146303238|ref|YP_001190554.1|	-	0.00027	20.4	0.1	0.00078	18.8	0.2	1.6	2	0	0	2	2	2	1	YhjQ	protein
MipZ	PF09140.6	gi|146303238|ref|YP_001190554.1|	-	0.00033	19.8	0.2	0.00065	18.8	0.0	1.5	2	0	0	2	2	2	1	ATPase	MipZ
ArgK	PF03308.11	gi|146303238|ref|YP_001190554.1|	-	0.0067	15.2	0.1	0.15	10.8	0.0	2.1	2	0	0	2	2	2	1	ArgK	protein
SRP54	PF00448.17	gi|146303238|ref|YP_001190554.1|	-	0.023	14.1	1.3	2.3	7.5	0.1	2.2	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
TrkA_C	PF02080.16	gi|146303238|ref|YP_001190554.1|	-	0.11	12.0	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	TrkA-C	domain
DUF4382	PF14321.1	gi|146303239|ref|YP_001190555.1|	-	1.6e-16	60.6	0.2	1.8e-16	60.4	0.2	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4382)
Ldh_1_N	PF00056.18	gi|146303240|ref|YP_001190556.1|	-	1.8e-30	105.6	0.1	3.8e-30	104.5	0.1	1.5	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
Ldh_1_C	PF02866.13	gi|146303240|ref|YP_001190556.1|	-	5e-12	45.9	0.0	7.5e-12	45.3	0.0	1.2	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	alpha/beta	C-terminal	domain
F420_oxidored	PF03807.12	gi|146303240|ref|YP_001190556.1|	-	0.00022	21.5	0.1	0.00056	20.2	0.0	1.8	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|146303240|ref|YP_001190556.1|	-	0.055	13.3	0.1	0.15	11.8	0.0	1.9	1	1	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Glyco_hydro_4	PF02056.11	gi|146303240|ref|YP_001190556.1|	-	0.059	12.6	0.2	0.2	10.9	0.0	2.0	2	0	0	2	2	2	0	Family	4	glycosyl	hydrolase
NAD_Gly3P_dh_N	PF01210.18	gi|146303240|ref|YP_001190556.1|	-	0.1	12.3	0.8	0.39	10.4	0.0	2.3	2	1	1	3	3	3	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
tRNA_anti-codon	PF01336.20	gi|146303241|ref|YP_001190557.1|	-	0.0096	15.7	0.7	0.023	14.5	0.5	1.7	1	1	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
KH_2	PF07650.12	gi|146303241|ref|YP_001190557.1|	-	0.02	14.4	0.8	0.22	11.0	0.3	2.1	2	0	0	2	2	2	0	KH	domain
MFS_1	PF07690.11	gi|146303242|ref|YP_001190558.1|	-	6.9e-21	74.3	46.2	6.9e-21	74.3	32.0	2.0	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303242|ref|YP_001190558.1|	-	1.4e-13	50.2	37.4	5.1e-13	48.4	8.0	2.2	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
CARDB	PF07705.6	gi|146303243|ref|YP_001190559.1|	-	9.6e-10	38.4	3.4	9.6e-10	38.4	2.4	5.5	3	3	2	5	5	4	2	CARDB
Rifin_STEVOR	PF02009.11	gi|146303243|ref|YP_001190559.1|	-	0.00011	21.9	1.0	0.00019	21.2	0.7	1.3	1	0	0	1	1	1	1	Rifin/stevor	family
DUF912	PF06024.7	gi|146303243|ref|YP_001190559.1|	-	0.0033	17.4	0.2	0.0078	16.2	0.2	1.6	1	0	0	1	1	1	1	Nucleopolyhedrovirus	protein	of	unknown	function	(DUF912)
Y_Y_Y	PF07495.8	gi|146303243|ref|YP_001190559.1|	-	0.0041	16.8	0.5	0.17	11.6	0.0	3.4	3	0	0	3	3	3	1	Y_Y_Y	domain
FtsX	PF02687.16	gi|146303243|ref|YP_001190559.1|	-	0.0086	15.8	6.8	0.11	12.2	0.5	3.3	3	0	0	3	3	3	1	FtsX-like	permease	family
TMEM154	PF15102.1	gi|146303243|ref|YP_001190559.1|	-	0.014	15.1	12.0	0.014	15.1	8.3	2.1	2	0	0	2	2	2	0	TMEM154	protein	family
WTF	PF03303.8	gi|146303243|ref|YP_001190559.1|	-	0.032	13.6	2.6	0.056	12.8	1.8	1.3	1	0	0	1	1	1	0	WTF	protein
Peptidase_M56	PF05569.6	gi|146303243|ref|YP_001190559.1|	-	0.12	11.3	1.7	0.19	10.6	1.2	1.3	1	0	0	1	1	1	0	BlaR1	peptidase	M56
DUF4064	PF13273.1	gi|146303243|ref|YP_001190559.1|	-	0.22	11.6	7.5	0.24	11.5	0.5	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4064)
DUF1180	PF06679.7	gi|146303243|ref|YP_001190559.1|	-	0.34	10.7	6.0	0.82	9.5	4.2	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
Alpha_GJ	PF03229.8	gi|146303243|ref|YP_001190559.1|	-	3.5	7.9	11.6	0.63	10.3	4.3	2.4	2	0	0	2	2	2	0	Alphavirus	glycoprotein	J
PaREP1	PF05942.6	gi|146303244|ref|YP_001190560.1|	-	0.063	13.1	0.0	0.13	12.1	0.0	1.5	2	0	0	2	2	2	0	Archaeal	PaREP1/PaREP8	family
DUF3935	PF13071.1	gi|146303245|ref|YP_001190561.1|	-	0.49	10.8	7.2	0.18	12.2	0.7	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3935)
UPF0126	PF03458.8	gi|146303245|ref|YP_001190561.1|	-	2.8	7.6	11.2	0.6	9.7	2.6	2.8	3	1	0	3	3	3	0	UPF0126	domain
DUF751	PF05421.6	gi|146303245|ref|YP_001190561.1|	-	8.3	6.7	11.2	3.8	7.8	0.1	3.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF751)
AA_permease_2	PF13520.1	gi|146303246|ref|YP_001190562.1|	-	1e-29	103.3	54.8	1e-29	103.3	38.0	2.0	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303246|ref|YP_001190562.1|	-	1.8e-23	82.6	41.3	1.8e-23	82.6	28.6	2.2	1	1	1	2	2	2	2	Amino	acid	permease
MFS_1	PF07690.11	gi|146303247|ref|YP_001190563.1|	-	2e-27	95.8	38.1	2e-27	95.8	26.4	1.9	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303247|ref|YP_001190563.1|	-	2.7e-21	75.6	28.3	1.3e-17	63.5	5.0	2.0	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
Sugar_tr	PF00083.19	gi|146303248|ref|YP_001190564.1|	-	3.8e-33	114.7	23.8	4.6e-33	114.4	16.5	1.1	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303248|ref|YP_001190564.1|	-	7.9e-25	87.3	40.5	2e-20	72.8	15.4	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
ADH_N	PF08240.7	gi|146303249|ref|YP_001190565.1|	-	1.2e-15	57.1	0.2	5.5e-14	51.8	0.1	2.5	1	1	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146303249|ref|YP_001190565.1|	-	3.5e-06	26.5	0.0	5.5e-05	22.7	0.0	2.1	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|146303249|ref|YP_001190565.1|	-	0.085	12.4	0.0	0.19	11.2	0.0	1.6	1	0	0	1	1	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
FAD_binding_3	PF01494.14	gi|146303249|ref|YP_001190565.1|	-	0.092	11.7	0.0	0.14	11.1	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
FmdA_AmdA	PF03069.10	gi|146303250|ref|YP_001190566.1|	-	1.1e-66	225.0	0.0	7e-38	130.2	0.0	2.0	1	1	1	2	2	2	2	Acetamidase/Formamidase	family
RHH_3	PF12651.2	gi|146303251|ref|YP_001190567.1|	-	0.00016	21.3	0.2	0.00031	20.3	0.1	1.5	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
RHH_1	PF01402.16	gi|146303251|ref|YP_001190567.1|	-	0.00086	19.0	0.8	0.0017	18.1	0.1	1.9	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
Cas_TM1802	PF09484.5	gi|146303251|ref|YP_001190567.1|	-	0.042	12.3	0.7	0.042	12.3	0.5	1.1	1	0	0	1	1	1	0	CRISPR-associated	protein	TM1802	(cas_TM1802)
SH2_2	PF14633.1	gi|146303251|ref|YP_001190567.1|	-	0.12	11.4	0.2	0.25	10.3	0.2	1.7	1	1	0	1	1	1	0	SH2	domain
Sugar_tr	PF00083.19	gi|146303252|ref|YP_001190568.1|	-	2.9e-21	75.5	11.7	2.9e-21	75.5	8.1	2.5	1	1	1	2	2	2	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303252|ref|YP_001190568.1|	-	1.3e-18	66.8	44.1	2.1e-18	66.1	30.6	1.3	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
TRI12	PF06609.8	gi|146303252|ref|YP_001190568.1|	-	0.0014	16.8	4.4	0.0014	16.8	3.0	1.6	1	1	0	2	2	2	1	Fungal	trichothecene	efflux	pump	(TRI12)
CBS	PF00571.23	gi|146303253|ref|YP_001190569.1|	-	5.4e-23	80.4	2.1	1.1e-12	47.4	0.0	5.3	5	2	0	5	5	5	4	CBS	domain
Fer4	PF00037.22	gi|146303253|ref|YP_001190569.1|	-	1.1e-08	34.2	22.8	5.9e-06	25.6	5.7	3.0	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303253|ref|YP_001190569.1|	-	3.3e-08	33.2	16.1	3.3e-08	33.2	11.2	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303253|ref|YP_001190569.1|	-	4e-08	32.9	28.1	8.9e-07	28.6	10.8	2.5	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303253|ref|YP_001190569.1|	-	4.5e-08	32.5	17.1	0.00025	20.8	2.4	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303253|ref|YP_001190569.1|	-	8.5e-07	28.5	22.7	0.0011	18.6	5.9	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146303253|ref|YP_001190569.1|	-	1.8e-06	28.2	18.4	2.5e-06	27.7	12.1	1.8	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303253|ref|YP_001190569.1|	-	1.3e-05	25.3	19.4	2.5e-05	24.4	13.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146303253|ref|YP_001190569.1|	-	1.8e-05	24.6	17.3	4.1e-05	23.5	12.0	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303253|ref|YP_001190569.1|	-	0.00031	20.8	15.9	0.003	17.7	3.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303253|ref|YP_001190569.1|	-	0.0016	19.1	7.8	0.033	14.9	0.2	2.6	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.1	gi|146303253|ref|YP_001190569.1|	-	0.0018	18.0	6.5	0.32	10.8	0.5	2.6	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303253|ref|YP_001190569.1|	-	0.55	10.6	18.1	0.45	10.9	3.1	2.6	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303253|ref|YP_001190569.1|	-	0.58	10.5	20.4	41	4.6	14.2	2.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146303253|ref|YP_001190569.1|	-	2.7	8.7	24.3	0.47	11.1	6.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|146303253|ref|YP_001190569.1|	-	9.7	6.8	20.4	76	3.9	5.2	3.0	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_5	PF12801.2	gi|146303254|ref|YP_001190570.1|	-	3.8e-06	26.5	1.0	3.8e-06	26.5	0.7	4.1	5	0	0	5	5	5	2	4Fe-4S	binding	domain
AAA	PF00004.24	gi|146303255|ref|YP_001190571.1|	-	5.8e-94	311.2	0.0	1.1e-45	155.0	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|146303255|ref|YP_001190571.1|	-	2.4e-16	59.4	0.0	5.8e-08	32.0	0.0	2.4	2	0	0	2	2	2	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|146303255|ref|YP_001190571.1|	-	1.2e-13	51.4	0.0	1.3e-05	25.2	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_5	PF07728.9	gi|146303255|ref|YP_001190571.1|	-	1.1e-12	47.8	0.3	9.9e-06	25.3	0.0	3.7	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_22	PF13401.1	gi|146303255|ref|YP_001190571.1|	-	1.3e-12	47.9	0.4	0.0009	19.3	0.0	4.1	2	2	0	2	2	2	2	AAA	domain
AAA_14	PF13173.1	gi|146303255|ref|YP_001190571.1|	-	6.6e-12	45.4	0.0	4.1e-05	23.4	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_2	PF07724.9	gi|146303255|ref|YP_001190571.1|	-	3.6e-11	43.2	0.0	0.00024	21.0	0.0	2.8	2	1	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.1	gi|146303255|ref|YP_001190571.1|	-	3.8e-10	39.8	0.0	0.00023	21.0	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|146303255|ref|YP_001190571.1|	-	6.9e-10	39.7	0.0	0.0016	19.2	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_19	PF13245.1	gi|146303255|ref|YP_001190571.1|	-	8.6e-10	38.2	0.0	0.0014	18.2	0.0	2.8	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_25	PF13481.1	gi|146303255|ref|YP_001190571.1|	-	2.6e-09	36.7	4.7	0.007	15.7	0.0	4.0	2	2	1	3	3	3	2	AAA	domain
TIP49	PF06068.8	gi|146303255|ref|YP_001190571.1|	-	3.4e-09	35.9	0.0	0.0015	17.3	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
IstB_IS21	PF01695.12	gi|146303255|ref|YP_001190571.1|	-	4e-09	36.1	0.0	0.0029	17.0	0.0	2.5	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.1	gi|146303255|ref|YP_001190571.1|	-	2.8e-08	33.9	0.0	0.0093	15.9	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Zeta_toxin	PF06414.7	gi|146303255|ref|YP_001190571.1|	-	5.6e-08	32.1	0.0	0.0011	18.1	0.0	2.4	2	0	0	2	2	2	2	Zeta	toxin
Mg_chelatase	PF01078.16	gi|146303255|ref|YP_001190571.1|	-	7.3e-08	31.8	0.6	0.0093	15.1	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|146303255|ref|YP_001190571.1|	-	7.3e-08	32.5	0.0	0.0075	16.4	0.0	2.8	2	0	0	2	2	2	2	RNA	helicase
AAA_18	PF13238.1	gi|146303255|ref|YP_001190571.1|	-	2.2e-07	31.2	0.0	0.005	17.1	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
Sigma54_activ_2	PF14532.1	gi|146303255|ref|YP_001190571.1|	-	2.8e-07	30.6	0.0	0.021	14.8	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|146303255|ref|YP_001190571.1|	-	8.5e-07	28.7	1.0	0.043	13.3	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|146303255|ref|YP_001190571.1|	-	1.5e-06	27.8	0.1	0.057	12.8	0.0	3.7	2	2	1	3	3	3	2	Sigma-54	interaction	domain
DUF815	PF05673.8	gi|146303255|ref|YP_001190571.1|	-	2.1e-06	26.8	0.0	0.0048	15.8	0.0	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
Parvo_NS1	PF01057.12	gi|146303255|ref|YP_001190571.1|	-	2.5e-06	26.5	0.1	0.029	13.2	0.0	2.2	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
NACHT	PF05729.7	gi|146303255|ref|YP_001190571.1|	-	5e-06	26.2	0.3	0.14	11.7	0.0	3.8	4	0	0	4	4	4	1	NACHT	domain
PhoH	PF02562.11	gi|146303255|ref|YP_001190571.1|	-	1.9e-05	23.9	0.1	0.23	10.6	0.0	2.5	2	0	0	2	2	2	2	PhoH-like	protein
Arch_ATPase	PF01637.13	gi|146303255|ref|YP_001190571.1|	-	2.3e-05	24.2	0.0	0.22	11.1	0.0	3.3	2	1	1	3	3	3	2	Archaeal	ATPase
AAA_3	PF07726.6	gi|146303255|ref|YP_001190571.1|	-	3.1e-05	23.5	0.0	0.2	11.2	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|146303255|ref|YP_001190571.1|	-	0.00012	21.0	0.0	0.15	10.8	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
KaiC	PF06745.8	gi|146303255|ref|YP_001190571.1|	-	0.00017	20.7	0.1	0.39	9.7	0.0	3.3	2	1	1	3	3	3	1	KaiC
CDC48_N	PF02359.13	gi|146303255|ref|YP_001190571.1|	-	0.0004	20.2	0.1	0.0011	18.8	0.1	1.8	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
ABC_tran	PF00005.22	gi|146303255|ref|YP_001190571.1|	-	0.00079	19.7	0.0	2.2	8.6	0.0	2.5	2	0	0	2	2	2	2	ABC	transporter
DUF2075	PF09848.4	gi|146303255|ref|YP_001190571.1|	-	0.00089	18.3	0.0	0.41	9.5	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
UPF0079	PF02367.12	gi|146303255|ref|YP_001190571.1|	-	0.00091	18.8	0.0	0.75	9.4	0.0	2.5	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_11	PF13086.1	gi|146303255|ref|YP_001190571.1|	-	0.0013	18.3	0.0	0.92	9.0	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
Vps4_C	PF09336.5	gi|146303255|ref|YP_001190571.1|	-	0.0015	18.4	0.4	0.21	11.4	0.0	3.3	3	0	0	3	3	2	1	Vps4	C	terminal	oligomerisation	domain
ResIII	PF04851.10	gi|146303255|ref|YP_001190571.1|	-	0.0015	18.3	0.0	0.36	10.6	0.0	2.5	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.1	gi|146303255|ref|YP_001190571.1|	-	0.0017	17.9	0.4	2.5	7.6	0.0	2.7	3	0	0	3	3	2	2	AAA	domain
Guanylate_kin	PF00625.16	gi|146303255|ref|YP_001190571.1|	-	0.002	17.5	0.4	7.8	5.9	0.0	3.8	2	2	2	4	4	4	0	Guanylate	kinase
ATP-synt_ab	PF00006.20	gi|146303255|ref|YP_001190571.1|	-	0.0038	16.7	0.0	0.61	9.5	0.0	2.3	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Bac_DnaA	PF00308.13	gi|146303255|ref|YP_001190571.1|	-	0.0043	16.7	0.0	2.9	7.4	0.0	2.9	2	2	0	2	2	2	0	Bacterial	dnaA	protein
SKI	PF01202.17	gi|146303255|ref|YP_001190571.1|	-	0.0056	16.5	0.6	3.7	7.4	0.0	3.2	4	0	0	4	4	3	0	Shikimate	kinase
NTPase_1	PF03266.10	gi|146303255|ref|YP_001190571.1|	-	0.007	16.0	1.7	5.6	6.6	0.0	4.2	3	2	2	5	5	4	0	NTPase
AAA_10	PF12846.2	gi|146303255|ref|YP_001190571.1|	-	0.014	14.8	3.4	8	5.8	0.0	4.0	4	1	1	5	5	5	0	AAA-like	domain
AAA_23	PF13476.1	gi|146303255|ref|YP_001190571.1|	-	0.018	15.3	0.0	5.9	7.1	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
IPT	PF01745.11	gi|146303255|ref|YP_001190571.1|	-	0.02	14.0	0.2	1.5	7.9	0.0	2.5	2	0	0	2	2	2	0	Isopentenyl	transferase
KAP_NTPase	PF07693.9	gi|146303255|ref|YP_001190571.1|	-	0.03	13.3	0.0	1.4	7.8	0.0	2.5	2	1	0	2	2	2	0	KAP	family	P-loop	domain
Molydop_binding	PF01568.16	gi|146303255|ref|YP_001190571.1|	-	0.03	14.1	0.0	3.5	7.4	0.0	2.6	1	1	1	2	2	2	0	Molydopterin	dinucleotide	binding	domain
DAP3	PF10236.4	gi|146303255|ref|YP_001190571.1|	-	0.034	13.0	0.0	2.2	7.1	0.0	2.8	3	0	0	3	3	3	0	Mitochondrial	ribosomal	death-associated	protein	3
AFG1_ATPase	PF03969.11	gi|146303255|ref|YP_001190571.1|	-	0.053	12.3	0.0	3.2	6.4	0.0	2.2	2	0	0	2	2	2	0	AFG1-like	ATPase
KTI12	PF08433.5	gi|146303255|ref|YP_001190571.1|	-	0.055	12.6	0.0	4.2	6.5	0.0	2.4	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
Viral_helicase1	PF01443.13	gi|146303255|ref|YP_001190571.1|	-	0.07	12.6	0.0	0.78	9.2	0.0	2.1	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
cobW	PF02492.14	gi|146303255|ref|YP_001190571.1|	-	0.13	11.7	1.0	9.2	5.6	0.0	3.2	3	0	0	3	3	3	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_21	PF13304.1	gi|146303255|ref|YP_001190571.1|	-	0.23	11.3	0.8	7.1	6.4	0.1	3.0	3	1	1	4	4	3	0	AAA	domain
YibE_F	PF07907.6	gi|146303257|ref|YP_001190573.1|	-	0.21	10.7	5.4	0.21	10.7	3.7	1.0	1	0	0	1	1	1	0	YibE/F-like	protein
Tweety	PF04906.8	gi|146303257|ref|YP_001190573.1|	-	1.6	7.0	5.8	0.26	9.6	1.2	1.5	1	1	1	2	2	2	0	Tweety
DUF1404	PF07185.6	gi|146303260|ref|YP_001190576.1|	-	3e-57	192.8	14.1	3.6e-57	192.6	9.8	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
DUF2628	PF10947.3	gi|146303260|ref|YP_001190576.1|	-	3	7.6	11.8	0.13	12.0	3.2	2.1	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2628)
DUF3917	PF13055.1	gi|146303261|ref|YP_001190577.1|	-	0.098	12.9	1.4	0.12	12.6	1.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3917)
EB_dh	PF09459.5	gi|146303263|ref|YP_001190579.1|	-	1.8e-06	27.6	5.4	1.8e-05	24.3	3.7	2.4	1	1	0	1	1	1	1	Ethylbenzene	dehydrogenase
DUF4345	PF14248.1	gi|146303264|ref|YP_001190580.1|	-	0.021	14.2	4.7	0.054	12.9	3.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4345)
DUF973	PF06157.6	gi|146303264|ref|YP_001190580.1|	-	0.039	12.9	1.3	0.045	12.7	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF973)
DUF4401	PF14351.1	gi|146303264|ref|YP_001190580.1|	-	0.042	12.8	1.4	0.05	12.5	1.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
FtsX	PF02687.16	gi|146303264|ref|YP_001190580.1|	-	0.058	13.1	1.9	0.069	12.9	1.3	1.1	1	0	0	1	1	1	0	FtsX-like	permease	family
Virul_fac_BrkB	PF03631.10	gi|146303264|ref|YP_001190580.1|	-	0.064	12.6	2.1	0.076	12.3	1.4	1.0	1	0	0	1	1	1	0	Virulence	factor	BrkB
Fig1	PF12351.3	gi|146303264|ref|YP_001190580.1|	-	0.088	12.6	0.2	0.11	12.3	0.2	1.0	1	0	0	1	1	1	0	Ca2+	regulator	and	membrane	fusion	protein	Fig1
DUF3040	PF11239.3	gi|146303264|ref|YP_001190580.1|	-	0.11	12.6	4.4	0.59	10.2	2.7	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
zf-DHHC	PF01529.15	gi|146303264|ref|YP_001190580.1|	-	0.17	11.2	1.7	0.18	11.1	1.2	1.0	1	0	0	1	1	1	0	DHHC	palmitoyltransferase
Tetraspannin	PF00335.15	gi|146303264|ref|YP_001190580.1|	-	0.25	10.6	5.7	0.29	10.3	4.0	1.0	1	0	0	1	1	1	0	Tetraspanin	family
PepSY_TM_3	PF13706.1	gi|146303264|ref|YP_001190580.1|	-	0.25	10.7	4.2	0.22	10.9	0.4	2.1	2	0	0	2	2	2	0	PepSY-associated	TM	helix
PepSY_TM	PF03929.11	gi|146303264|ref|YP_001190580.1|	-	0.42	11.0	6.4	2.4	8.7	1.1	2.2	2	0	0	2	2	2	0	PepSY-associated	TM	helix
Yip1	PF04893.12	gi|146303264|ref|YP_001190580.1|	-	0.47	9.9	5.7	0.52	9.7	4.0	1.0	1	0	0	1	1	1	0	Yip1	domain
Gram_pos_anchor	PF00746.16	gi|146303264|ref|YP_001190580.1|	-	1.3	8.9	11.9	4.1	7.3	1.3	2.2	2	0	0	2	2	2	0	Gram	positive	anchor
DUF4097	PF13349.1	gi|146303264|ref|YP_001190580.1|	-	1.9	8.0	4.5	0.97	8.9	2.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4097)
DUF202	PF02656.10	gi|146303264|ref|YP_001190580.1|	-	1.9	8.7	7.1	2.8	8.2	1.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF202)
YtpI	PF14007.1	gi|146303264|ref|YP_001190580.1|	-	3.2	7.7	6.9	0.94	9.4	0.5	2.2	1	1	1	2	2	2	0	YtpI-like	protein
TMEM238	PF15125.1	gi|146303264|ref|YP_001190580.1|	-	5.9	6.8	8.1	0.79	9.6	1.3	2.1	1	1	1	2	2	2	0	TMEM238	protein	family
COX2	PF00116.15	gi|146303265|ref|YP_001190581.1|	-	2.8e-09	36.8	4.5	3.4e-09	36.5	0.3	2.6	1	1	1	2	2	2	1	Cytochrome	C	oxidase	subunit	II,	periplasmic	domain
CD47	PF04549.9	gi|146303267|ref|YP_001190583.1|	-	0.087	12.8	0.9	0.096	12.6	0.6	1.1	1	0	0	1	1	1	0	CD47	transmembrane	region
PIG-P	PF08510.7	gi|146303267|ref|YP_001190583.1|	-	0.18	11.4	0.5	0.2	11.3	0.2	1.3	1	1	0	1	1	1	0	PIG-P
DUF3188	PF11384.3	gi|146303267|ref|YP_001190583.1|	-	0.23	11.0	5.0	0.6	9.7	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3188)
DUF2834	PF11196.3	gi|146303267|ref|YP_001190583.1|	-	0.23	11.6	1.8	0.38	10.9	0.1	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2834)
DUF4454	PF14628.1	gi|146303268|ref|YP_001190584.1|	-	0.051	13.1	0.0	0.081	12.5	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4454)
HlyD_3	PF13437.1	gi|146303268|ref|YP_001190584.1|	-	0.089	13.1	0.2	3.8	7.9	0.0	2.1	1	1	1	2	2	2	0	HlyD	family	secretion	protein
COX1	PF00115.15	gi|146303269|ref|YP_001190585.1|	-	1.9e-56	191.6	51.4	2e-56	191.5	33.2	1.9	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
COX1	PF00115.15	gi|146303270|ref|YP_001190586.1|	-	7.2e-59	199.5	49.6	7.2e-59	199.5	34.4	1.8	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Peptidase_M50	PF02163.17	gi|146303270|ref|YP_001190586.1|	-	0.13	11.1	3.1	2.5	7.0	2.3	2.7	3	1	0	3	3	3	0	Peptidase	family	M50
CBS	PF00571.23	gi|146303271|ref|YP_001190587.1|	-	1.6e-46	155.8	22.2	5.9e-13	48.3	1.3	4.1	4	0	0	4	4	4	4	CBS	domain
Pyr_redox_2	PF07992.9	gi|146303272|ref|YP_001190588.1|	-	2.4e-30	105.9	0.1	4.2e-29	101.8	0.1	3.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303272|ref|YP_001190588.1|	-	1.7e-18	66.8	0.1	6e-17	61.8	0.0	2.6	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Reductase_C	PF14759.1	gi|146303272|ref|YP_001190588.1|	-	7.9e-15	54.9	0.0	2.8e-14	53.1	0.0	2.0	1	0	0	1	1	1	1	Reductase	C-terminal
Pyr_redox_3	PF13738.1	gi|146303272|ref|YP_001190588.1|	-	1.6e-09	38.1	1.6	0.013	15.5	0.5	4.0	2	1	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146303272|ref|YP_001190588.1|	-	4.8e-09	35.5	2.7	4.8e-06	25.7	0.0	3.6	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.1	gi|146303272|ref|YP_001190588.1|	-	6.4e-07	29.2	0.5	0.098	12.4	0.0	4.1	3	1	1	4	4	4	2	FAD-NAD(P)-binding
K_oxygenase	PF13434.1	gi|146303272|ref|YP_001190588.1|	-	2.6e-05	23.3	0.0	0.0087	15.0	0.0	2.6	1	1	2	3	3	3	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Lycopene_cycl	PF05834.7	gi|146303272|ref|YP_001190588.1|	-	2.7e-05	23.2	0.4	0.17	10.7	0.0	3.6	2	2	2	4	4	4	2	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|146303272|ref|YP_001190588.1|	-	0.00083	17.9	0.5	0.15	10.4	0.0	3.0	3	1	1	4	4	4	1	HI0933-like	protein
CPSase_L_chain	PF00289.17	gi|146303272|ref|YP_001190588.1|	-	0.0011	19.0	0.0	0.019	15.0	0.0	2.4	3	0	0	3	3	2	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NAD_binding_8	PF13450.1	gi|146303272|ref|YP_001190588.1|	-	0.0035	17.3	0.0	0.21	11.6	0.0	2.7	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|146303272|ref|YP_001190588.1|	-	0.0062	16.2	0.0	0.017	14.7	0.0	1.7	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|146303272|ref|YP_001190588.1|	-	0.0085	15.1	0.0	0.028	13.4	0.0	1.9	2	0	0	2	2	2	1	FAD	binding	domain
APOBEC_C	PF05240.9	gi|146303272|ref|YP_001190588.1|	-	0.066	12.6	0.1	0.18	11.2	0.1	1.7	1	0	0	1	1	1	0	APOBEC-like	C-terminal	domain
DUF1188	PF06690.6	gi|146303272|ref|YP_001190588.1|	-	0.073	12.1	0.0	0.22	10.6	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
ThiF	PF00899.16	gi|146303272|ref|YP_001190588.1|	-	0.11	12.3	0.3	5.7	6.7	0.3	2.4	2	0	0	2	2	2	0	ThiF	family
ApbA	PF02558.11	gi|146303272|ref|YP_001190588.1|	-	0.14	11.6	0.3	0.59	9.5	0.2	2.2	1	1	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
FAD_binding_2	PF00890.19	gi|146303272|ref|YP_001190588.1|	-	0.17	10.6	0.7	16	4.2	0.1	3.6	4	1	1	5	5	5	0	FAD	binding	domain
HEPN	PF05168.9	gi|146303273|ref|YP_001190589.1|	-	2.1e-24	85.7	0.2	2.3e-24	85.5	0.1	1.0	1	0	0	1	1	1	1	HEPN	domain
NTP_transf_2	PF01909.18	gi|146303274|ref|YP_001190590.1|	-	2.9e-10	40.3	0.3	4.2e-10	39.8	0.2	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|146303274|ref|YP_001190590.1|	-	0.02	14.9	0.0	0.025	14.6	0.0	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
DUF294	PF03445.8	gi|146303274|ref|YP_001190590.1|	-	0.066	12.8	0.0	0.098	12.2	0.0	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
E1-E2_ATPase	PF00122.15	gi|146303275|ref|YP_001190591.1|	-	4.9e-53	179.5	2.1	1.1e-52	178.3	1.4	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|146303275|ref|YP_001190591.1|	-	4.8e-34	118.6	0.0	1.2e-33	117.3	0.0	1.7	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.21	gi|146303275|ref|YP_001190591.1|	-	7.1e-16	58.0	3.9	2.2e-10	40.5	0.6	3.2	3	0	0	3	3	3	2	Heavy-metal-associated	domain
HAD	PF12710.2	gi|146303275|ref|YP_001190591.1|	-	2e-10	41.1	0.0	6.3e-10	39.5	0.0	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|146303275|ref|YP_001190591.1|	-	0.0014	18.3	0.1	0.0079	15.7	0.1	2.0	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
YHS	PF04945.8	gi|146303276|ref|YP_001190592.1|	-	3.7e-21	74.7	2.3	4.3e-21	74.4	1.6	1.0	1	0	0	1	1	1	1	YHS	domain
zf-FCS	PF06467.9	gi|146303276|ref|YP_001190592.1|	-	2.6e-05	23.7	1.7	3.7e-05	23.2	1.2	1.2	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.5	gi|146303276|ref|YP_001190592.1|	-	7.8e-05	22.7	1.8	0.00011	22.2	1.2	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
ATPase-cat_bd	PF12156.3	gi|146303276|ref|YP_001190592.1|	-	0.029	14.8	0.1	0.033	14.7	0.1	1.1	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
Baculo_IE-1	PF05290.6	gi|146303276|ref|YP_001190592.1|	-	0.16	11.6	1.0	0.19	11.4	0.7	1.0	1	0	0	1	1	1	0	Baculovirus	immediate-early	protein	(IE-0)
Arc_trans_TRASH	PF08394.5	gi|146303277|ref|YP_001190593.1|	-	2.5e-17	62.7	6.2	4.4e-17	61.9	4.3	1.4	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_24	PF13412.1	gi|146303277|ref|YP_001190593.1|	-	1.8e-10	40.0	1.0	3.2e-10	39.2	0.7	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.7	gi|146303277|ref|YP_001190593.1|	-	8.2e-09	34.9	0.2	2.4e-08	33.5	0.2	1.7	1	0	0	1	1	1	1	HTH	domain
MarR	PF01047.17	gi|146303277|ref|YP_001190593.1|	-	2.4e-07	30.3	0.8	3.5e-07	29.8	0.2	1.6	2	0	0	2	2	1	1	MarR	family
HTH_AsnC-type	PF13404.1	gi|146303277|ref|YP_001190593.1|	-	2e-06	27.2	0.2	3.7e-06	26.3	0.1	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_23	PF13384.1	gi|146303277|ref|YP_001190593.1|	-	5.3e-06	25.9	0.1	1.1e-05	24.9	0.1	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
TrmB	PF01978.14	gi|146303277|ref|YP_001190593.1|	-	1e-05	25.1	0.7	2.3e-05	24.0	0.2	1.7	2	0	0	2	2	1	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|146303277|ref|YP_001190593.1|	-	8.1e-05	22.4	0.5	0.00022	21.0	0.1	1.9	2	0	0	2	2	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR_2	PF12802.2	gi|146303277|ref|YP_001190593.1|	-	8.7e-05	22.1	0.2	0.00018	21.1	0.1	1.5	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|146303277|ref|YP_001190593.1|	-	0.00017	20.9	0.2	0.0014	17.9	0.1	2.1	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.1	gi|146303277|ref|YP_001190593.1|	-	0.00021	21.0	0.0	0.00049	19.8	0.0	1.7	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
Rrf2	PF02082.15	gi|146303277|ref|YP_001190593.1|	-	0.00028	20.9	0.1	0.00081	19.4	0.1	1.7	2	0	0	2	2	1	1	Transcriptional	regulator
HTH_28	PF13518.1	gi|146303277|ref|YP_001190593.1|	-	0.00037	20.4	0.0	0.00095	19.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.7	gi|146303277|ref|YP_001190593.1|	-	0.00042	19.8	0.2	0.00073	19.0	0.1	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_29	PF13551.1	gi|146303277|ref|YP_001190593.1|	-	0.00049	20.2	0.0	0.00083	19.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_36	PF13730.1	gi|146303277|ref|YP_001190593.1|	-	0.00051	20.1	0.2	0.0011	19.0	0.2	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_6	PF01418.12	gi|146303277|ref|YP_001190593.1|	-	0.00059	19.5	0.0	0.0011	18.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain,	rpiR	family
Mga	PF05043.8	gi|146303277|ref|YP_001190593.1|	-	0.00083	19.5	0.1	0.0017	18.6	0.1	1.5	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
Put_DNA-bind_N	PF06971.8	gi|146303277|ref|YP_001190593.1|	-	0.00087	19.0	0.5	0.0023	17.6	0.3	1.8	1	1	0	1	1	1	1	Putative	DNA-binding	protein	N-terminus
DUF977	PF06163.6	gi|146303277|ref|YP_001190593.1|	-	0.0013	18.5	0.0	0.002	17.8	0.0	1.3	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF977)
HTH_3	PF01381.17	gi|146303277|ref|YP_001190593.1|	-	0.0016	18.2	0.8	0.0025	17.6	0.0	1.7	2	0	0	2	2	1	1	Helix-turn-helix
HTH_7	PF02796.10	gi|146303277|ref|YP_001190593.1|	-	0.0021	17.8	0.1	0.0051	16.6	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_27	PF13463.1	gi|146303277|ref|YP_001190593.1|	-	0.0028	17.9	0.4	0.0079	16.4	0.1	1.8	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|146303277|ref|YP_001190593.1|	-	0.004	16.6	0.1	0.0066	16.0	0.1	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|146303277|ref|YP_001190593.1|	-	0.0049	16.3	0.1	0.011	15.2	0.1	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_26	PF13443.1	gi|146303277|ref|YP_001190593.1|	-	0.005	17.0	0.1	0.0098	16.0	0.1	1.6	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
zf-FCS	PF06467.9	gi|146303277|ref|YP_001190593.1|	-	0.0063	16.1	1.7	0.013	15.1	1.2	1.5	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
TFIIE_alpha	PF02002.12	gi|146303277|ref|YP_001190593.1|	-	0.0088	15.5	0.2	0.022	14.2	0.0	1.7	2	0	0	2	2	1	1	TFIIE	alpha	subunit
HTH_5	PF01022.15	gi|146303277|ref|YP_001190593.1|	-	0.01	15.4	0.1	0.022	14.3	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Penicillinase_R	PF03965.11	gi|146303277|ref|YP_001190593.1|	-	0.012	15.6	0.2	0.032	14.3	0.0	1.8	2	0	0	2	2	2	0	Penicillinase	repressor
HTH_Mga	PF08280.6	gi|146303277|ref|YP_001190593.1|	-	0.015	15.0	0.1	0.032	13.9	0.1	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_20	PF12840.2	gi|146303277|ref|YP_001190593.1|	-	0.017	14.9	0.1	0.033	13.9	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Cro	PF09048.5	gi|146303277|ref|YP_001190593.1|	-	0.049	13.2	0.0	0.089	12.4	0.0	1.4	1	0	0	1	1	1	0	Cro
HTH_39	PF14090.1	gi|146303277|ref|YP_001190593.1|	-	0.052	13.0	0.1	0.11	12.0	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|146303277|ref|YP_001190593.1|	-	0.066	13.4	0.9	0.24	11.6	0.0	2.3	3	0	0	3	3	2	0	Helix-turn-helix	domain
FeoC	PF09012.5	gi|146303277|ref|YP_001190593.1|	-	0.073	12.7	1.8	0.21	11.2	0.0	2.6	3	0	0	3	3	3	0	FeoC	like	transcriptional	regulator
DUF603	PF04645.7	gi|146303277|ref|YP_001190593.1|	-	0.089	12.7	0.1	0.22	11.4	0.0	1.6	2	0	0	2	2	1	0	Protein	of	unknown	function,	DUF603
HTH_22	PF13309.1	gi|146303277|ref|YP_001190593.1|	-	0.094	12.4	0.7	0.39	10.5	0.1	2.3	2	1	1	3	3	2	0	HTH	domain
HTH_38	PF13936.1	gi|146303277|ref|YP_001190593.1|	-	0.26	10.8	0.2	0.26	10.8	0.1	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
Zn_ribbon_recom	PF13408.1	gi|146303277|ref|YP_001190593.1|	-	0.26	11.5	4.1	0.5	10.6	2.9	1.5	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Peptidase_M20	PF01546.23	gi|146303278|ref|YP_001190594.1|	-	2e-33	115.4	0.1	2.5e-33	115.1	0.1	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|146303278|ref|YP_001190594.1|	-	2.7e-15	56.0	0.0	6.9e-15	54.7	0.0	1.7	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Enoyl_reductase	PF12241.3	gi|146303278|ref|YP_001190594.1|	-	0.068	12.1	0.0	0.27	10.2	0.0	1.8	1	1	0	2	2	2	0	Trans-2-enoyl-CoA	reductase	catalytic	region
NTP_transf_2	PF01909.18	gi|146303279|ref|YP_001190595.1|	-	5.7e-10	39.3	3.3	7.2e-10	39.0	2.3	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Halogen_Hydrol	PF10112.4	gi|146303279|ref|YP_001190595.1|	-	0.021	14.2	0.7	0.19	11.1	0.4	2.1	2	0	0	2	2	2	0	5-bromo-4-chloroindolyl	phosphate	hydrolysis	protein
Adenyl_cycl_N	PF12633.2	gi|146303279|ref|YP_001190595.1|	-	0.03	13.8	0.0	0.032	13.7	0.0	1.1	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
MdcG	PF10620.4	gi|146303279|ref|YP_001190595.1|	-	0.059	12.9	0.0	0.071	12.6	0.0	1.2	1	0	0	1	1	1	0	Phosphoribosyl-dephospho-CoA	transferase	MdcG
DNA_pol_B_palm	PF14792.1	gi|146303279|ref|YP_001190595.1|	-	0.078	13.0	0.1	0.094	12.7	0.1	1.2	1	0	0	1	1	1	0	DNA	polymerase	beta	palm
DNA_pol_E_B	PF04042.11	gi|146303279|ref|YP_001190595.1|	-	0.12	11.6	0.0	0.13	11.5	0.0	1.1	1	0	0	1	1	1	0	DNA	polymerase	alpha/epsilon	subunit	B
AAA_14	PF13173.1	gi|146303280|ref|YP_001190596.1|	-	3.1e-05	23.8	0.0	7.7e-05	22.6	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|146303280|ref|YP_001190596.1|	-	0.004	16.8	0.1	0.068	12.8	0.0	2.3	1	1	1	2	2	2	1	Archaeal	ATPase
Nsp3_PL2pro	PF12124.3	gi|146303280|ref|YP_001190596.1|	-	0.011	15.2	0.1	0.027	14.0	0.1	1.6	1	0	0	1	1	1	0	Coronavirus	polyprotein	cleavage	domain
AAA_22	PF13401.1	gi|146303280|ref|YP_001190596.1|	-	0.042	13.9	0.0	0.67	10.1	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|146303280|ref|YP_001190596.1|	-	0.13	11.6	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Arginase	PF00491.16	gi|146303281|ref|YP_001190597.1|	-	3.4e-77	259.4	0.0	4.1e-77	259.1	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
UPF0489	PF12640.2	gi|146303281|ref|YP_001190597.1|	-	0.24	11.5	2.0	0.84	9.8	1.4	1.9	1	1	0	1	1	1	0	UPF0489	domain
5-FTHF_cyc-lig	PF01812.15	gi|146303282|ref|YP_001190598.1|	-	2.2e-34	118.8	0.0	2.7e-34	118.5	0.0	1.1	1	0	0	1	1	1	1	5-formyltetrahydrofolate	cyclo-ligase	family
ABM	PF03992.11	gi|146303283|ref|YP_001190599.1|	-	6.7e-16	58.0	0.0	7.7e-16	57.8	0.0	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
SOR	PF07682.6	gi|146303283|ref|YP_001190599.1|	-	0.0018	16.9	0.2	0.017	13.7	0.1	1.9	1	1	0	1	1	1	1	Sulphur	oxygenase	reductase
Dabb	PF07876.7	gi|146303283|ref|YP_001190599.1|	-	0.12	12.7	0.0	0.15	12.5	0.0	1.1	1	0	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
Cytochrom_B_N_2	PF13631.1	gi|146303284|ref|YP_001190600.1|	-	7.1e-56	188.5	9.0	7.1e-56	188.5	6.3	4.3	2	2	2	4	4	4	1	Cytochrome	b(N-terminal)/b6/petB
Vma12	PF11712.3	gi|146303284|ref|YP_001190600.1|	-	0.016	14.9	0.5	1.1	8.8	0.1	2.8	2	0	0	2	2	2	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
DUF4516	PF14990.1	gi|146303284|ref|YP_001190600.1|	-	0.056	13.0	1.0	10	5.7	0.1	3.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4516)
Rieske	PF00355.21	gi|146303285|ref|YP_001190601.1|	-	5.6e-11	41.8	0.3	1.3e-10	40.6	0.2	1.5	1	1	0	1	1	1	1	Rieske	[2Fe-2S]	domain
CytB6-F_Fe-S	PF08802.5	gi|146303285|ref|YP_001190601.1|	-	0.33	10.9	0.1	0.33	10.9	0.1	2.0	2	0	0	2	2	2	0	Cytochrome	B6-F	complex	Fe-S	subunit
EB_dh	PF09459.5	gi|146303287|ref|YP_001190603.1|	-	1e-80	270.9	2.3	1e-80	270.9	1.6	1.3	2	0	0	2	2	2	1	Ethylbenzene	dehydrogenase
SSP160	PF06933.6	gi|146303287|ref|YP_001190603.1|	-	0.0096	13.9	13.3	0.014	13.4	9.2	1.1	1	0	0	1	1	1	1	Special	lobe-specific	silk	protein	SSP160
DUF3439	PF11921.3	gi|146303287|ref|YP_001190603.1|	-	0.037	13.7	11.2	0.078	12.7	7.8	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3439)
TMEM154	PF15102.1	gi|146303287|ref|YP_001190603.1|	-	0.26	10.9	6.8	0.44	10.2	4.7	1.3	1	0	0	1	1	1	0	TMEM154	protein	family
Cir_Bir_Yir	PF06022.6	gi|146303287|ref|YP_001190603.1|	-	0.33	10.1	1.5	0.5	9.5	1.0	1.2	1	0	0	1	1	1	0	Plasmodium	variant	antigen	protein	Cir/Yir/Bir
Mucin	PF01456.12	gi|146303287|ref|YP_001190603.1|	-	9.4	6.0	22.6	18	5.0	15.7	1.4	1	0	0	1	1	1	0	Mucin-like	glycoprotein
E1-E2_ATPase	PF00122.15	gi|146303288|ref|YP_001190604.1|	-	1.6e-60	204.0	7.6	1.6e-60	204.0	5.3	2.9	2	1	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.21	gi|146303288|ref|YP_001190604.1|	-	8.2e-29	101.5	0.0	1.5e-28	100.7	0.0	1.4	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146303288|ref|YP_001190604.1|	-	1.5e-15	57.9	0.0	2.8e-15	56.9	0.0	1.5	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Cation_ATPase_N	PF00690.21	gi|146303288|ref|YP_001190604.1|	-	4.6e-14	51.6	0.1	1.3e-13	50.1	0.0	1.8	1	0	0	1	1	1	1	Cation	transporter/ATPase,	N-terminus
Hydrolase_3	PF08282.7	gi|146303288|ref|YP_001190604.1|	-	0.0001	21.9	0.1	0.00023	20.8	0.1	1.6	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like2	PF13246.1	gi|146303288|ref|YP_001190604.1|	-	0.034	14.0	0.0	0.091	12.7	0.0	1.7	1	0	0	1	1	1	0	Putative	hydrolase	of	sodium-potassium	ATPase	alpha	subunit
POR	PF01558.13	gi|146303290|ref|YP_001190606.1|	-	1.4e-40	139.0	0.0	1.6e-40	138.8	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Fer4	PF00037.22	gi|146303291|ref|YP_001190607.1|	-	5.3e-13	47.9	13.8	4.2e-09	35.6	3.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146303291|ref|YP_001190607.1|	-	6.7e-12	45.0	20.0	5.5e-08	32.4	6.9	1.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303291|ref|YP_001190607.1|	-	8.4e-11	41.2	14.3	2.3e-06	27.2	2.9	2.1	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303291|ref|YP_001190607.1|	-	2e-10	40.3	7.1	2.5e-10	40.0	4.9	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303291|ref|YP_001190607.1|	-	2.1e-09	37.6	9.6	3e-09	37.1	6.7	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303291|ref|YP_001190607.1|	-	2.1e-08	33.5	11.1	4.4e-05	23.1	1.8	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146303291|ref|YP_001190607.1|	-	2.4e-07	30.9	11.0	3e-07	30.5	7.6	1.1	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146303291|ref|YP_001190607.1|	-	2.6e-07	31.2	8.6	0.00017	22.2	2.0	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_4	PF12800.2	gi|146303291|ref|YP_001190607.1|	-	0.00056	20.0	15.1	0.01	16.1	2.8	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146303291|ref|YP_001190607.1|	-	0.0023	17.9	13.1	0.039	13.9	2.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303291|ref|YP_001190607.1|	-	0.003	17.8	10.5	0.3	11.4	2.1	2.1	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|146303291|ref|YP_001190607.1|	-	0.014	15.9	2.9	0.014	15.9	2.0	2.2	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|146303291|ref|YP_001190607.1|	-	0.15	12.7	15.6	0.2	12.3	5.5	2.5	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|146303291|ref|YP_001190607.1|	-	0.33	11.3	10.4	0.23	11.8	2.0	2.3	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|146303291|ref|YP_001190607.1|	-	0.83	10.1	14.2	0.11	12.9	3.1	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
POR_N	PF01855.14	gi|146303292|ref|YP_001190608.1|	-	2.8e-72	242.9	1.0	3.5e-72	242.6	0.7	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|146303292|ref|YP_001190608.1|	-	2.9e-07	30.4	0.0	7.3e-07	29.1	0.0	1.6	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|146303292|ref|YP_001190608.1|	-	0.058	12.8	2.7	0.15	11.5	1.9	1.7	1	1	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|146303293|ref|YP_001190609.1|	-	2.9e-22	78.8	0.0	4.3e-22	78.3	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|146303293|ref|YP_001190609.1|	-	0.0011	17.9	0.0	0.0023	16.9	0.0	1.5	2	0	0	2	2	2	1	1-deoxy-D-xylulose-5-phosphate	synthase
E1_dh	PF00676.15	gi|146303293|ref|YP_001190609.1|	-	0.015	14.0	1.7	0.035	12.8	0.0	1.9	2	0	0	2	2	2	0	Dehydrogenase	E1	component
Radical_SAM	PF04055.16	gi|146303294|ref|YP_001190610.1|	-	8.2e-28	97.6	0.1	3.4e-27	95.6	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146303294|ref|YP_001190610.1|	-	1.9e-10	40.7	0.0	8.2e-09	35.5	0.0	2.3	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|146303294|ref|YP_001190610.1|	-	8e-09	35.7	0.0	1.7e-08	34.7	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|146303295|ref|YP_001190611.1|	-	2.9e-17	63.3	0.0	5.6e-17	62.4	0.0	1.5	2	0	0	2	2	2	1	Radical	SAM	superfamily
SPASM	PF13186.1	gi|146303295|ref|YP_001190611.1|	-	5.2e-07	29.8	0.3	1.7e-06	28.2	0.2	1.9	1	0	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
Fer4_12	PF13353.1	gi|146303295|ref|YP_001190611.1|	-	6.6e-07	29.5	0.0	2.1e-06	27.9	0.0	1.7	1	1	1	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|146303295|ref|YP_001190611.1|	-	0.0015	18.5	0.0	0.004	17.1	0.0	1.7	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
AAA_assoc	PF14363.1	gi|146303295|ref|YP_001190611.1|	-	0.002	18.1	0.0	0.0037	17.2	0.0	1.4	1	0	0	1	1	1	1	Domain	associated	at	C-terminal	with	AAA
DUF1216	PF06746.6	gi|146303295|ref|YP_001190611.1|	-	0.016	15.0	0.3	0.027	14.2	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1216)
DUF521	PF04412.8	gi|146303295|ref|YP_001190611.1|	-	0.025	13.1	0.1	0.055	12.0	0.1	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF521)
YyzF	PF14116.1	gi|146303295|ref|YP_001190611.1|	-	0.03	14.2	0.3	4	7.4	0.0	2.4	2	0	0	2	2	2	0	YyzF-like	protein
NmrA	PF05368.8	gi|146303295|ref|YP_001190611.1|	-	0.14	11.4	0.0	0.25	10.5	0.0	1.5	1	1	0	1	1	1	0	NmrA-like	family
Lactamase_B	PF00753.22	gi|146303296|ref|YP_001190612.1|	-	2.3e-20	73.0	2.2	2.9e-20	72.7	1.5	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146303296|ref|YP_001190612.1|	-	7.2e-05	22.4	0.0	8.5e-05	22.1	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Peptidase_U32	PF01136.14	gi|146303297|ref|YP_001190613.1|	-	2.7e-18	65.7	0.0	1e-17	63.8	0.0	1.8	1	1	0	1	1	1	1	Peptidase	family	U32
DUF424	PF04242.8	gi|146303297|ref|YP_001190613.1|	-	0.02	14.9	0.2	0.23	11.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF424)
HpaB_N	PF11794.3	gi|146303297|ref|YP_001190613.1|	-	0.066	12.5	0.0	0.11	11.8	0.0	1.2	1	0	0	1	1	1	0	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
Radical_SAM	PF04055.16	gi|146303298|ref|YP_001190614.1|	-	3.2e-15	56.6	0.1	8.2e-15	55.3	0.1	1.8	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146303298|ref|YP_001190614.1|	-	6.4e-13	49.0	0.0	1.3e-12	48.0	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|146303298|ref|YP_001190614.1|	-	7.6e-10	38.8	0.0	1.6e-09	37.8	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
SPASM	PF13186.1	gi|146303298|ref|YP_001190614.1|	-	0.0086	16.4	0.1	0.035	14.4	0.1	2.1	1	1	0	1	1	1	1	Iron-sulfur	cluster-binding	domain
YwpF	PF14183.1	gi|146303298|ref|YP_001190614.1|	-	0.031	14.0	0.3	0.26	10.9	0.1	2.4	2	0	0	2	2	2	0	YwpF-like	protein
CbiA	PF01656.18	gi|146303300|ref|YP_001190616.1|	-	1.8e-10	40.5	0.2	2.6e-10	40.0	0.1	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146303300|ref|YP_001190616.1|	-	1.5e-07	31.4	0.0	3.6e-07	30.2	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303300|ref|YP_001190616.1|	-	3e-06	26.5	0.1	4.8e-06	25.8	0.0	1.4	1	1	0	1	1	1	1	Anion-transporting	ATPase
Lactamase_B	PF00753.22	gi|146303300|ref|YP_001190616.1|	-	0.00057	19.5	0.0	0.001	18.7	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
MipZ	PF09140.6	gi|146303300|ref|YP_001190616.1|	-	0.045	12.8	0.0	0.072	12.1	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
AAA_17	PF13207.1	gi|146303300|ref|YP_001190616.1|	-	0.066	14.0	0.8	0.17	12.6	0.2	1.9	2	1	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|146303300|ref|YP_001190616.1|	-	0.082	13.2	0.2	0.26	11.6	0.1	1.8	2	0	0	2	2	2	0	AAA	domain
AurF	PF11583.3	gi|146303301|ref|YP_001190617.1|	-	2.8e-05	23.1	0.0	0.00044	19.2	0.0	2.4	2	1	0	2	2	2	1	P-aminobenzoate	N-oxygenase	AurF
DUF2989	PF11207.3	gi|146303301|ref|YP_001190617.1|	-	0.034	13.5	0.1	0.064	12.6	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2989)
Rubrerythrin	PF02915.12	gi|146303301|ref|YP_001190617.1|	-	0.04	14.2	0.1	0.13	12.5	0.0	2.0	2	0	0	2	2	2	0	Rubrerythrin
CbiA	PF01656.18	gi|146303302|ref|YP_001190618.1|	-	3.3e-09	36.4	0.2	8.1e-09	35.1	0.1	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ArsA_ATPase	PF02374.10	gi|146303302|ref|YP_001190618.1|	-	5.9e-07	28.8	0.2	1.5e-06	27.4	0.1	1.7	1	0	0	1	1	1	1	Anion-transporting	ATPase
AAA_31	PF13614.1	gi|146303302|ref|YP_001190618.1|	-	8e-05	22.6	0.0	0.00015	21.7	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
MipZ	PF09140.6	gi|146303302|ref|YP_001190618.1|	-	0.00092	18.3	0.1	0.0036	16.4	0.0	1.8	2	0	0	2	2	2	1	ATPase	MipZ
AAA_25	PF13481.1	gi|146303302|ref|YP_001190618.1|	-	0.0032	16.8	0.0	0.006	16.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146303302|ref|YP_001190618.1|	-	0.011	16.5	0.5	0.02	15.6	0.4	1.7	1	1	0	1	1	1	0	AAA	domain
Fer4_NifH	PF00142.13	gi|146303302|ref|YP_001190618.1|	-	0.04	13.0	0.1	0.064	12.4	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_18	PF13238.1	gi|146303302|ref|YP_001190618.1|	-	0.085	13.1	0.0	0.13	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|146303302|ref|YP_001190618.1|	-	0.1	12.0	0.0	0.16	11.3	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
APS_kinase	PF01583.15	gi|146303302|ref|YP_001190618.1|	-	0.12	11.9	0.1	0.28	10.8	0.0	1.6	1	0	0	1	1	1	0	Adenylylsulphate	kinase
DUF1611	PF07755.6	gi|146303302|ref|YP_001190618.1|	-	0.12	10.9	0.1	0.2	10.2	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1611)
ABC2_membrane_2	PF12679.2	gi|146303303|ref|YP_001190619.1|	-	2.7e-12	46.1	23.4	3.6e-12	45.7	16.2	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|146303303|ref|YP_001190619.1|	-	1.2e-08	34.3	27.8	4.1e-08	32.6	19.4	1.7	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_3	PF12698.2	gi|146303303|ref|YP_001190619.1|	-	0.00059	18.9	25.1	0.00078	18.5	17.4	1.3	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC_tran	PF00005.22	gi|146303304|ref|YP_001190620.1|	-	2.4e-26	92.6	0.0	3.8e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303304|ref|YP_001190620.1|	-	5.9e-12	46.1	0.1	4.7e-06	26.7	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303304|ref|YP_001190620.1|	-	3.9e-05	22.8	0.0	0.036	13.1	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146303304|ref|YP_001190620.1|	-	8.5e-05	22.9	0.5	0.00018	21.8	0.1	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_29	PF13555.1	gi|146303304|ref|YP_001190620.1|	-	0.00022	20.6	0.1	0.00041	19.8	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|146303304|ref|YP_001190620.1|	-	0.0019	18.1	0.2	0.0049	16.8	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_24	PF13479.1	gi|146303304|ref|YP_001190620.1|	-	0.01	15.4	0.4	0.26	10.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|146303304|ref|YP_001190620.1|	-	0.014	14.8	0.1	0.48	9.8	0.0	2.3	2	1	0	2	2	2	0	AAA-like	domain
AAA_22	PF13401.1	gi|146303304|ref|YP_001190620.1|	-	0.017	15.2	0.4	0.063	13.4	0.1	2.2	2	1	0	2	2	2	0	AAA	domain
NTPase_1	PF03266.10	gi|146303304|ref|YP_001190620.1|	-	0.021	14.5	4.5	9.8	5.8	0.1	3.2	3	0	0	3	3	3	0	NTPase
Arch_ATPase	PF01637.13	gi|146303304|ref|YP_001190620.1|	-	0.028	14.1	0.5	0.11	12.2	0.0	2.1	2	1	0	2	2	2	0	Archaeal	ATPase
MobB	PF03205.9	gi|146303304|ref|YP_001190620.1|	-	0.046	13.4	0.3	0.17	11.5	0.1	2.0	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|146303304|ref|YP_001190620.1|	-	0.052	13.1	0.1	0.17	11.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
cobW	PF02492.14	gi|146303304|ref|YP_001190620.1|	-	0.053	12.9	0.0	0.095	12.1	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
MMR_HSR1	PF01926.18	gi|146303304|ref|YP_001190620.1|	-	0.08	12.9	0.0	0.13	12.2	0.0	1.7	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
SMC_N	PF02463.14	gi|146303304|ref|YP_001190620.1|	-	0.096	11.8	0.0	0.19	10.9	0.0	1.4	1	0	0	1	1	1	0	RecF/RecN/SMC	N	terminal	domain
AAA_19	PF13245.1	gi|146303304|ref|YP_001190620.1|	-	0.1	12.3	0.8	0.38	10.5	0.3	2.1	2	0	0	2	2	2	0	Part	of	AAA	domain
DUF258	PF03193.11	gi|146303304|ref|YP_001190620.1|	-	0.12	11.5	0.0	0.19	10.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
Adeno_IVa2	PF02456.10	gi|146303304|ref|YP_001190620.1|	-	0.13	10.8	0.0	0.18	10.3	0.0	1.2	1	0	0	1	1	1	0	Adenovirus	IVa2	protein
AAA_13	PF13166.1	gi|146303304|ref|YP_001190620.1|	-	0.17	10.3	0.0	0.24	9.8	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|146303304|ref|YP_001190620.1|	-	0.19	11.6	1.1	0.8	9.5	0.0	2.6	3	1	0	3	3	2	0	AAA	domain
VIT1	PF01988.14	gi|146303305|ref|YP_001190621.1|	-	2.3e-33	115.5	21.3	6.3e-32	110.8	11.6	2.6	2	1	0	2	2	2	1	VIT	family
Rubrerythrin	PF02915.12	gi|146303305|ref|YP_001190621.1|	-	4e-09	36.8	2.1	4.7e-09	36.6	0.5	1.8	2	0	0	2	2	2	1	Rubrerythrin
Ferritin_2	PF13668.1	gi|146303305|ref|YP_001190621.1|	-	0.034	14.0	0.1	5	7.0	0.0	2.3	2	0	0	2	2	2	0	Ferritin-like	domain
COQ7	PF03232.8	gi|146303305|ref|YP_001190621.1|	-	0.12	11.8	0.1	10	5.5	0.0	2.7	2	1	1	3	3	3	0	Ubiquinone	biosynthesis	protein	COQ7
TPP_enzyme_C	PF02775.16	gi|146303307|ref|YP_001190623.1|	-	5.4e-30	103.9	0.0	7.7e-30	103.4	0.0	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PFO_beta_C	PF12367.3	gi|146303307|ref|YP_001190623.1|	-	4.8e-12	45.6	0.1	2.5e-11	43.3	0.1	2.0	1	1	0	1	1	1	1	Pyruvate	ferredoxin	oxidoreductase	beta	subunit	C	terminal
POR_N	PF01855.14	gi|146303308|ref|YP_001190624.1|	-	3.3e-62	210.0	0.1	4.8e-62	209.4	0.1	1.3	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
POR	PF01558.13	gi|146303308|ref|YP_001190624.1|	-	8e-33	113.7	1.8	6.7e-32	110.7	0.7	2.2	2	0	0	2	2	2	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Transketolase_C	PF02780.15	gi|146303308|ref|YP_001190624.1|	-	4.1e-09	36.4	0.0	1.2e-08	34.8	0.0	1.8	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|146303308|ref|YP_001190624.1|	-	2.8e-05	23.6	0.3	7.3e-05	22.3	0.2	1.7	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
DUF2164	PF09932.4	gi|146303308|ref|YP_001190624.1|	-	0.00016	21.3	0.0	0.0036	17.0	0.0	2.4	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2164)
ASL_C2	PF14698.1	gi|146303308|ref|YP_001190624.1|	-	0.075	13.1	0.0	18	5.4	0.0	2.9	2	0	0	2	2	2	0	Argininosuccinate	lyase	C-terminal
PaREP1	PF05942.6	gi|146303309|ref|YP_001190625.1|	-	2.5e-13	49.8	0.1	4.3e-13	49.1	0.1	1.4	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
Ald_Xan_dh_C2	PF02738.13	gi|146303310|ref|YP_001190626.1|	-	2.6e-108	362.7	0.0	3.5e-108	362.3	0.0	1.2	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146303310|ref|YP_001190626.1|	-	2.8e-21	75.6	0.0	4.5e-21	75.0	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
TraB	PF01963.12	gi|146303311|ref|YP_001190627.1|	-	0.018	14.5	0.0	2.3	7.5	0.0	2.2	2	0	0	2	2	2	0	TraB	family
CN_hydrolase	PF00795.17	gi|146303314|ref|YP_001190630.1|	-	2.8e-09	36.5	0.0	1.6e-08	34.1	0.0	2.1	1	1	0	1	1	1	1	Carbon-nitrogen	hydrolase
CBS	PF00571.23	gi|146303315|ref|YP_001190631.1|	-	2.4e-51	171.2	2.9	2e-15	56.2	0.0	4.3	4	0	0	4	4	4	4	CBS	domain
Ribosomal_S30AE	PF02482.14	gi|146303315|ref|YP_001190631.1|	-	1.7e-09	37.9	1.0	4.3e-09	36.6	0.3	1.9	2	0	0	2	2	2	1	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
H_kinase_N	PF12282.3	gi|146303315|ref|YP_001190631.1|	-	0.00028	20.5	0.6	2.3	7.8	0.0	3.3	3	0	0	3	3	3	3	Signal	transduction	histidine	kinase
Hist_deacetyl	PF00850.14	gi|146303316|ref|YP_001190632.1|	-	5.1e-77	259.2	0.0	1e-76	258.2	0.0	1.4	1	1	1	2	2	2	1	Histone	deacetylase	domain
ATP-grasp	PF02222.17	gi|146303317|ref|YP_001190633.1|	-	4.9e-43	146.4	0.1	7.9e-43	145.7	0.1	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146303317|ref|YP_001190633.1|	-	4.1e-23	82.0	0.1	7e-23	81.3	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|146303317|ref|YP_001190633.1|	-	1.1e-11	44.3	0.0	2e-11	43.6	0.0	1.3	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
Dala_Dala_lig_C	PF07478.8	gi|146303317|ref|YP_001190633.1|	-	4.2e-09	36.0	0.0	8.3e-09	35.1	0.0	1.5	1	0	0	1	1	1	1	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|146303317|ref|YP_001190633.1|	-	3.4e-07	29.9	0.0	3.9e-06	26.4	0.0	2.4	2	1	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|146303317|ref|YP_001190633.1|	-	4.1e-07	30.0	0.1	6.5e-07	29.3	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
CPSase_L_chain	PF00289.17	gi|146303317|ref|YP_001190633.1|	-	4.7e-06	26.6	0.6	1.6e-05	24.9	0.1	2.2	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
GARS_A	PF01071.14	gi|146303317|ref|YP_001190633.1|	-	1.1e-05	25.1	0.3	6.5e-05	22.5	0.0	2.1	2	0	0	2	2	2	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.1	gi|146303317|ref|YP_001190633.1|	-	0.0036	16.5	1.2	0.0076	15.4	0.1	2.2	3	0	0	3	3	3	1	ATP-grasp	domain
2-Hacid_dh_C	PF02826.14	gi|146303317|ref|YP_001190633.1|	-	0.011	14.8	0.1	0.023	13.8	0.0	1.5	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
RmlD_sub_bind	PF04321.12	gi|146303317|ref|YP_001190633.1|	-	0.034	13.0	0.1	0.053	12.4	0.1	1.3	1	0	0	1	1	1	0	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|146303317|ref|YP_001190633.1|	-	0.048	13.1	0.0	0.075	12.4	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
potato_inhibit	PF00280.13	gi|146303317|ref|YP_001190633.1|	-	0.1	12.7	0.1	0.38	10.9	0.1	2.0	1	0	0	1	1	1	0	Potato	inhibitor	I	family
DUF4143	PF13635.1	gi|146303318|ref|YP_001190634.1|	-	0.001	19.2	0.0	0.0015	18.7	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
McrBC	PF10117.4	gi|146303318|ref|YP_001190634.1|	-	0.0033	16.3	0.0	0.0043	16.0	0.0	1.1	1	0	0	1	1	1	1	McrBC	5-methylcytosine	restriction	system	component
DUF3211	PF11485.3	gi|146303321|ref|YP_001190637.1|	-	2.2e-51	173.4	0.0	2.4e-51	173.3	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
DUF929	PF06053.6	gi|146303322|ref|YP_001190638.1|	-	2.3e-83	279.1	14.1	2.7e-83	278.8	9.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
DAO	PF01266.19	gi|146303323|ref|YP_001190639.1|	-	5.1e-12	45.3	0.1	2.8e-05	23.2	0.0	2.2	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303323|ref|YP_001190639.1|	-	0.00031	20.6	0.1	0.00061	19.7	0.1	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|146303323|ref|YP_001190639.1|	-	0.004	17.0	0.0	0.007	16.2	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
TrkA_N	PF02254.13	gi|146303323|ref|YP_001190639.1|	-	0.0078	16.2	0.1	0.019	14.9	0.0	1.6	2	0	0	2	2	2	1	TrkA-N	domain
Pyr_redox	PF00070.22	gi|146303323|ref|YP_001190639.1|	-	0.012	16.0	0.0	0.038	14.4	0.0	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|146303323|ref|YP_001190639.1|	-	0.017	14.5	0.0	0.03	13.7	0.0	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
3HCDH_N	PF02737.13	gi|146303323|ref|YP_001190639.1|	-	0.099	12.2	0.0	0.17	11.4	0.0	1.4	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|146303323|ref|YP_001190639.1|	-	0.13	11.6	0.0	0.26	10.6	0.0	1.5	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|146303323|ref|YP_001190639.1|	-	0.19	10.7	0.1	0.27	10.2	0.0	1.2	1	0	0	1	1	1	0	FAD	binding	domain
PepSY_TM_3	PF13706.1	gi|146303325|ref|YP_001190641.1|	-	1	8.8	5.7	0.2	11.0	0.3	2.2	2	0	0	2	2	2	0	PepSY-associated	TM	helix
MoCF_biosynth	PF00994.19	gi|146303326|ref|YP_001190642.1|	-	2e-31	108.3	0.1	2.3e-31	108.1	0.1	1.0	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
Fer4_8	PF13183.1	gi|146303327|ref|YP_001190643.1|	-	2.3e-09	37.1	3.8	4.9e-09	36.0	2.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303327|ref|YP_001190643.1|	-	3.5e-08	33.5	6.1	7.9e-08	32.4	4.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303327|ref|YP_001190643.1|	-	1.2e-07	32.0	3.4	0.0045	17.3	0.4	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303327|ref|YP_001190643.1|	-	1.5e-07	30.7	12.3	0.00012	21.5	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146303327|ref|YP_001190643.1|	-	1.6e-07	31.5	6.3	3e-07	30.7	4.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303327|ref|YP_001190643.1|	-	4.3e-07	29.6	6.9	1e-06	28.3	4.8	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303327|ref|YP_001190643.1|	-	4.6e-06	26.8	6.3	1.3e-05	25.4	4.5	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303327|ref|YP_001190643.1|	-	8.9e-05	22.1	9.9	0.0016	18.2	0.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303327|ref|YP_001190643.1|	-	0.00026	20.7	14.2	0.0064	16.3	2.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146303327|ref|YP_001190643.1|	-	0.00041	20.4	10.3	0.0038	17.4	0.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303327|ref|YP_001190643.1|	-	0.00061	20.1	17.6	0.11	13.1	4.0	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303327|ref|YP_001190643.1|	-	0.00068	19.4	5.9	0.0015	18.3	4.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146303327|ref|YP_001190643.1|	-	0.00072	20.2	10.4	0.012	16.3	7.3	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_15	PF13459.1	gi|146303327|ref|YP_001190643.1|	-	0.0074	16.8	4.4	0.099	13.2	0.3	2.6	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|146303327|ref|YP_001190643.1|	-	0.023	15.0	5.5	0.13	12.6	0.4	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DEAD	PF00270.24	gi|146303329|ref|YP_001190645.1|	-	3.6e-23	81.9	0.0	6.4e-22	77.8	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|146303329|ref|YP_001190645.1|	-	1.3e-17	63.4	0.0	1.1e-14	54.0	0.0	2.6	2	0	0	2	2	2	2	Helicase	conserved	C-terminal	domain
DUF1998	PF09369.5	gi|146303329|ref|YP_001190645.1|	-	9.2e-13	48.5	0.1	2.3e-12	47.3	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1998)
ResIII	PF04851.10	gi|146303329|ref|YP_001190645.1|	-	0.00022	21.1	0.0	0.00077	19.3	0.0	1.9	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SecA_DEAD	PF07517.9	gi|146303329|ref|YP_001190645.1|	-	0.014	14.6	0.0	0.027	13.7	0.0	1.4	1	0	0	1	1	1	0	SecA	DEAD-like	domain
AAA_19	PF13245.1	gi|146303329|ref|YP_001190645.1|	-	0.11	12.3	0.0	0.46	10.2	0.0	2.1	1	0	0	1	1	1	0	Part	of	AAA	domain
QueC	PF06508.8	gi|146303330|ref|YP_001190646.1|	-	2e-58	197.1	0.0	3.4e-58	196.3	0.0	1.4	1	0	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
GATase_7	PF13537.1	gi|146303330|ref|YP_001190646.1|	-	5.8e-14	51.9	0.0	1.1e-13	51.0	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.1	gi|146303330|ref|YP_001190646.1|	-	1.7e-12	47.4	0.0	3.3e-12	46.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
ThiI	PF02568.9	gi|146303330|ref|YP_001190646.1|	-	1e-11	44.7	0.1	5.7e-11	42.2	0.1	2.3	1	1	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
tRNA_Me_trans	PF03054.11	gi|146303330|ref|YP_001190646.1|	-	0.00019	20.0	0.0	0.00061	18.4	0.0	1.7	2	0	0	2	2	2	1	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|146303330|ref|YP_001190646.1|	-	0.00032	20.2	0.0	0.00073	19.1	0.0	1.5	2	0	0	2	2	2	1	Asparagine	synthase
ATP_bind_3	PF01171.15	gi|146303330|ref|YP_001190646.1|	-	0.0081	15.6	0.0	0.017	14.6	0.0	1.5	1	0	0	1	1	1	1	PP-loop	family
GATase_2	PF00310.16	gi|146303330|ref|YP_001190646.1|	-	0.027	13.1	0.0	5.2	5.6	0.0	2.7	2	1	1	3	3	3	0	Glutamine	amidotransferases	class-II
ZapA	PF05164.8	gi|146303330|ref|YP_001190646.1|	-	0.093	12.7	0.0	0.25	11.3	0.0	1.7	1	0	0	1	1	1	0	Cell	division	protein	ZapA
DUF1634	PF07843.6	gi|146303331|ref|YP_001190647.1|	-	1.6e-28	98.3	11.5	1.9e-28	98.1	8.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1634)
Peptidase_M50	PF02163.17	gi|146303331|ref|YP_001190647.1|	-	0.34	9.8	5.1	0.47	9.3	3.6	1.2	1	0	0	1	1	1	0	Peptidase	family	M50
Cytochrom_B561	PF03188.11	gi|146303331|ref|YP_001190647.1|	-	3.1	7.6	6.6	12	5.7	0.9	2.1	2	0	0	2	2	2	0	Eukaryotic	cytochrome	b561
Syndecan	PF01034.15	gi|146303331|ref|YP_001190647.1|	-	9.1	6.0	9.2	5	6.8	0.5	2.4	2	0	0	2	2	2	0	Syndecan	domain
TauE	PF01925.14	gi|146303332|ref|YP_001190648.1|	-	3.2e-42	144.6	32.1	3.9e-42	144.3	22.3	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Antitoxin-MazE	PF04014.13	gi|146303334|ref|YP_001190650.1|	-	1.9e-05	24.2	0.6	7e-05	22.4	0.1	2.1	2	0	0	2	2	2	1	Antidote-toxin	recognition	MazE
FAD_binding_4	PF01565.18	gi|146303335|ref|YP_001190651.1|	-	4.8e-20	71.4	0.1	6.9e-20	70.9	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain
DUF3986	PF13143.1	gi|146303335|ref|YP_001190651.1|	-	0.094	13.1	0.0	0.19	12.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3986)
FAD-oxidase_C	PF02913.14	gi|146303336|ref|YP_001190652.1|	-	4e-57	193.3	0.0	5.4e-57	192.9	0.0	1.2	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.18	gi|146303336|ref|YP_001190652.1|	-	6e-28	97.0	0.5	1e-27	96.3	0.3	1.4	1	0	0	1	1	1	1	FAD	binding	domain
CCG	PF02754.11	gi|146303337|ref|YP_001190653.1|	-	5.8e-18	64.6	0.3	1.1e-09	38.1	0.0	2.6	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|146303337|ref|YP_001190653.1|	-	1.1e-10	41.3	6.6	3.6e-10	39.6	4.6	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303337|ref|YP_001190653.1|	-	1.4e-10	41.3	6.7	3.5e-10	40.1	4.6	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303337|ref|YP_001190653.1|	-	6.1e-10	39.2	4.9	1.3e-09	38.2	3.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303337|ref|YP_001190653.1|	-	5.2e-08	32.1	12.2	8.8e-05	21.9	1.7	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146303337|ref|YP_001190653.1|	-	4.2e-07	29.6	7.7	3.7e-05	23.4	6.6	2.4	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303337|ref|YP_001190653.1|	-	9.2e-06	25.2	13.2	0.0014	18.4	1.7	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303337|ref|YP_001190653.1|	-	1.6e-05	24.5	13.2	0.00055	19.6	2.2	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303337|ref|YP_001190653.1|	-	2.8e-05	24.4	7.3	0.035	14.5	1.1	2.6	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146303337|ref|YP_001190653.1|	-	0.00015	22.4	2.8	0.12	13.1	0.2	2.5	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_9	PF13187.1	gi|146303337|ref|YP_001190653.1|	-	0.00023	21.3	11.1	0.14	12.4	2.0	2.6	1	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303337|ref|YP_001190653.1|	-	0.00036	20.6	11.7	0.047	14.0	1.7	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303337|ref|YP_001190653.1|	-	0.0015	18.9	16.6	0.28	11.8	2.5	2.9	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|146303337|ref|YP_001190653.1|	-	0.01	16.4	5.1	0.76	10.3	0.5	2.6	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.1	gi|146303337|ref|YP_001190653.1|	-	0.011	15.5	11.1	0.079	12.8	7.7	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|146303337|ref|YP_001190653.1|	-	0.039	13.5	0.3	0.039	13.5	0.2	2.5	1	1	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_13	PF13370.1	gi|146303337|ref|YP_001190653.1|	-	0.11	12.8	6.3	4.4	7.7	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
SMP_2	PF10144.4	gi|146303338|ref|YP_001190654.1|	-	0.12	11.4	0.0	0.2	10.7	0.0	1.3	1	0	0	1	1	1	0	Bacterial	virulence	factor	haemolysin
CbiA	PF01656.18	gi|146303339|ref|YP_001190655.1|	-	2e-28	99.1	0.0	2.4e-28	98.8	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|146303339|ref|YP_001190655.1|	-	5.1e-12	45.4	0.0	6.8e-12	45.0	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
AAA_31	PF13614.1	gi|146303339|ref|YP_001190655.1|	-	1.1e-10	41.6	0.0	1.8e-05	24.7	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303339|ref|YP_001190655.1|	-	8.7e-07	28.2	0.5	0.00056	19.0	0.1	2.3	1	1	0	2	2	2	2	Anion-transporting	ATPase
ParA	PF10609.4	gi|146303339|ref|YP_001190655.1|	-	0.00074	19.3	0.1	0.0012	18.6	0.1	1.4	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
AAA_25	PF13481.1	gi|146303339|ref|YP_001190655.1|	-	0.002	17.5	0.2	0.035	13.5	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
VirC1	PF07015.6	gi|146303339|ref|YP_001190655.1|	-	0.0059	15.7	0.1	0.022	13.8	0.0	1.8	2	0	0	2	2	2	1	VirC1	protein
Fer4_NifH	PF00142.13	gi|146303339|ref|YP_001190655.1|	-	0.022	13.9	0.1	0.042	13.0	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
RuvB_N	PF05496.7	gi|146303339|ref|YP_001190655.1|	-	0.022	13.7	0.4	0.054	12.5	0.0	1.7	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
YhjQ	PF06564.7	gi|146303339|ref|YP_001190655.1|	-	0.03	13.6	0.0	0.13	11.6	0.0	1.8	2	0	0	2	2	2	0	YhjQ	protein
AAA_19	PF13245.1	gi|146303339|ref|YP_001190655.1|	-	0.087	12.5	0.6	2.8	7.7	0.2	2.3	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_24	PF13479.1	gi|146303339|ref|YP_001190655.1|	-	0.11	12.0	0.1	0.71	9.4	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
Pyr_redox_2	PF07992.9	gi|146303341|ref|YP_001190657.1|	-	4.8e-17	62.5	0.0	1.9e-16	60.5	0.0	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303341|ref|YP_001190657.1|	-	4e-10	39.9	0.2	7.2e-06	26.3	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303341|ref|YP_001190657.1|	-	4.6e-06	25.9	0.3	0.00051	19.2	0.4	2.2	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|146303341|ref|YP_001190657.1|	-	0.00015	21.7	0.4	0.00059	19.8	0.1	2.2	3	0	0	3	3	3	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|146303341|ref|YP_001190657.1|	-	0.00033	19.6	0.0	0.00059	18.7	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|146303341|ref|YP_001190657.1|	-	0.00039	19.4	0.0	0.0023	16.9	0.0	2.0	2	0	0	2	2	2	1	Lycopene	cyclase	protein
DAO	PF01266.19	gi|146303341|ref|YP_001190657.1|	-	0.00061	18.8	1.9	0.0019	17.1	0.2	2.4	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|146303341|ref|YP_001190657.1|	-	0.0082	16.3	0.0	0.02	15.1	0.0	1.8	1	0	0	1	1	1	1	Putative	NAD(P)-binding
HI0933_like	PF03486.9	gi|146303341|ref|YP_001190657.1|	-	0.013	13.9	0.3	0.059	11.8	0.1	1.9	2	0	0	2	2	2	0	HI0933-like	protein
DUF619	PF04768.8	gi|146303341|ref|YP_001190657.1|	-	0.019	14.3	0.1	0.51	9.7	0.0	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF619)
Thi4	PF01946.12	gi|146303341|ref|YP_001190657.1|	-	0.019	14.0	0.3	0.05	12.7	0.1	1.7	2	0	0	2	2	2	0	Thi4	family
TrkA_N	PF02254.13	gi|146303341|ref|YP_001190657.1|	-	0.02	14.9	0.1	0.05	13.5	0.0	1.8	1	0	0	1	1	1	0	TrkA-N	domain
Trp_halogenase	PF04820.9	gi|146303341|ref|YP_001190657.1|	-	0.022	13.4	0.3	0.047	12.3	0.2	1.5	1	0	0	1	1	1	0	Tryptophan	halogenase
NAD_binding_9	PF13454.1	gi|146303341|ref|YP_001190657.1|	-	0.028	14.2	0.6	0.24	11.1	0.2	2.3	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Amino_oxidase	PF01593.19	gi|146303341|ref|YP_001190657.1|	-	0.034	13.2	0.0	0.051	12.6	0.0	1.2	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303341|ref|YP_001190657.1|	-	0.063	13.3	0.3	1.2	9.1	0.1	2.6	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
NTP_transf_3	PF12804.2	gi|146303342|ref|YP_001190658.1|	-	3.6e-13	49.8	0.0	4.5e-13	49.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
NTP_transferase	PF00483.18	gi|146303342|ref|YP_001190658.1|	-	2.2e-05	23.9	0.1	3.8e-05	23.1	0.0	1.5	2	1	0	2	2	2	1	Nucleotidyl	transferase
CTP_transf_3	PF02348.14	gi|146303342|ref|YP_001190658.1|	-	0.001	18.7	0.0	0.0015	18.2	0.0	1.3	1	1	0	1	1	1	1	Cytidylyltransferase
DUF1614	PF07758.6	gi|146303343|ref|YP_001190659.1|	-	3.8e-45	153.7	11.8	3.8e-45	153.7	8.2	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1614)
DUF3211	PF11485.3	gi|146303344|ref|YP_001190660.1|	-	2.9e-53	179.5	0.1	3.2e-53	179.4	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
DUF3211	PF11485.3	gi|146303345|ref|YP_001190661.1|	-	9.2e-50	168.2	0.2	1e-49	168.0	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
Aldolase_2	PF10120.4	gi|146303347|ref|YP_001190663.1|	-	9.2e-58	194.3	0.0	1.1e-57	194.1	0.0	1.1	1	0	0	1	1	1	1	Putative	aldolase
PadR	PF03551.9	gi|146303348|ref|YP_001190664.1|	-	3.7e-16	58.6	0.0	5.5e-16	58.0	0.0	1.3	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|146303348|ref|YP_001190664.1|	-	0.00085	18.9	0.5	0.0063	16.1	0.1	2.5	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146303348|ref|YP_001190664.1|	-	0.0014	18.8	0.0	0.0022	18.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Stork_head	PF10264.4	gi|146303348|ref|YP_001190664.1|	-	0.0025	17.9	0.0	0.0048	17.0	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	Storkhead-box1	domain
DUF4364	PF14277.1	gi|146303348|ref|YP_001190664.1|	-	0.0029	17.2	0.0	0.0057	16.2	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
DUF1495	PF07381.6	gi|146303348|ref|YP_001190664.1|	-	0.0044	16.6	0.1	0.013	15.1	0.1	1.9	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_45	PF14947.1	gi|146303348|ref|YP_001190664.1|	-	0.04	13.7	0.2	0.094	12.5	0.0	1.8	2	0	0	2	2	2	0	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|146303348|ref|YP_001190664.1|	-	0.059	13.4	0.0	0.11	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
ECH	PF00378.15	gi|146303349|ref|YP_001190665.1|	-	7e-26	90.8	0.0	8.8e-26	90.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
ABC2_membrane_3	PF12698.2	gi|146303350|ref|YP_001190666.1|	-	6.1e-14	51.8	27.1	7.6e-14	51.5	18.8	1.1	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane	PF01061.19	gi|146303350|ref|YP_001190666.1|	-	5.3e-12	45.3	20.7	6.7e-12	45.0	9.7	2.1	2	0	0	2	2	2	2	ABC-2	type	transporter
DUF2453	PF10507.4	gi|146303350|ref|YP_001190666.1|	-	0.043	13.6	2.5	1.5	8.6	0.1	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2453)
ABC_tran	PF00005.22	gi|146303351|ref|YP_001190667.1|	-	1.1e-33	116.3	0.0	1.7e-33	115.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303351|ref|YP_001190667.1|	-	4.3e-16	59.7	0.0	2e-10	41.1	0.0	2.2	1	1	0	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146303351|ref|YP_001190667.1|	-	1.9e-05	23.9	0.0	0.0015	17.8	0.0	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|146303351|ref|YP_001190667.1|	-	0.0015	18.9	0.8	0.0034	17.7	0.5	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|146303351|ref|YP_001190667.1|	-	0.0025	16.9	0.0	0.12	11.4	0.0	2.3	1	1	1	2	2	2	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|146303351|ref|YP_001190667.1|	-	0.0035	17.2	0.0	0.052	13.4	0.0	2.5	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_16	PF13191.1	gi|146303351|ref|YP_001190667.1|	-	0.0055	16.7	0.0	0.0089	16.0	0.0	1.4	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA	PF00004.24	gi|146303351|ref|YP_001190667.1|	-	0.0069	16.5	0.1	0.026	14.7	0.1	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_29	PF13555.1	gi|146303351|ref|YP_001190667.1|	-	0.0091	15.5	0.0	0.017	14.6	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
UB2H	PF14814.1	gi|146303351|ref|YP_001190667.1|	-	0.015	15.0	0.2	0.029	14.0	0.1	1.5	1	0	0	1	1	1	0	Bifunctional	transglycosylase	second	domain
AAA_22	PF13401.1	gi|146303351|ref|YP_001190667.1|	-	0.015	15.3	0.2	0.3	11.2	0.0	2.4	2	1	0	2	2	2	0	AAA	domain
Rad17	PF03215.10	gi|146303351|ref|YP_001190667.1|	-	0.02	13.6	0.0	0.022	13.4	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
SRP54	PF00448.17	gi|146303351|ref|YP_001190667.1|	-	0.021	14.2	0.1	0.036	13.4	0.1	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
DUF258	PF03193.11	gi|146303351|ref|YP_001190667.1|	-	0.033	13.3	0.0	0.057	12.6	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_30	PF13604.1	gi|146303351|ref|YP_001190667.1|	-	0.037	13.6	0.0	0.099	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|146303351|ref|YP_001190667.1|	-	0.037	13.4	0.3	2.4	7.5	0.1	2.2	2	0	0	2	2	2	0	AAA-like	domain
UPF0079	PF02367.12	gi|146303351|ref|YP_001190667.1|	-	0.046	13.3	0.3	0.11	12.1	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
IstB_IS21	PF01695.12	gi|146303351|ref|YP_001190667.1|	-	0.047	13.0	0.0	0.73	9.2	0.0	2.1	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_13	PF13166.1	gi|146303351|ref|YP_001190667.1|	-	0.096	11.1	0.0	0.12	10.8	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|146303351|ref|YP_001190667.1|	-	0.12	12.1	0.0	0.26	11.0	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
Fer4_10	PF13237.1	gi|146303352|ref|YP_001190668.1|	-	1.4e-06	27.9	6.2	2.2e-06	27.3	4.3	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303352|ref|YP_001190668.1|	-	3.5e-05	23.4	10.4	0.0093	15.8	2.5	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146303352|ref|YP_001190668.1|	-	5.8e-05	23.3	17.8	0.00019	21.7	7.0	2.2	2	1	2	4	4	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303352|ref|YP_001190668.1|	-	0.00019	21.6	8.2	0.00056	20.1	5.8	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|146303352|ref|YP_001190668.1|	-	0.00063	19.5	1.5	0.0015	18.3	1.1	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303352|ref|YP_001190668.1|	-	0.00085	18.8	13.9	0.084	12.5	0.4	3.0	2	1	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146303352|ref|YP_001190668.1|	-	0.0015	18.5	6.7	0.0066	16.4	4.5	2.2	2	2	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146303352|ref|YP_001190668.1|	-	0.0016	19.1	3.8	0.23	12.2	0.0	2.4	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_2	PF12797.2	gi|146303352|ref|YP_001190668.1|	-	0.0024	17.6	9.8	0.059	13.3	2.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303352|ref|YP_001190668.1|	-	0.012	15.9	6.4	0.96	9.9	0.1	3.1	3	0	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303352|ref|YP_001190668.1|	-	0.12	12.7	8.9	5.4	7.4	6.3	2.5	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146303352|ref|YP_001190668.1|	-	0.18	12.4	14.4	1.6	9.4	1.1	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|146303352|ref|YP_001190668.1|	-	0.57	9.8	6.2	0.24	11.0	1.0	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_21	PF14697.1	gi|146303352|ref|YP_001190668.1|	-	1.1	9.1	8.4	6.2	6.7	5.9	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
COX1	PF00115.15	gi|146303353|ref|YP_001190669.1|	-	2.1e-63	214.5	62.6	2.1e-63	214.5	42.1	1.7	1	1	1	2	2	2	2	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
Rdx	PF10262.4	gi|146303354|ref|YP_001190670.1|	-	1.6e-19	69.6	0.0	1.8e-19	69.5	0.0	1.0	1	0	0	1	1	1	1	Rdx	family
Radical_SAM	PF04055.16	gi|146303355|ref|YP_001190671.1|	-	5.3e-13	49.4	0.2	4.1e-12	46.5	0.0	2.1	2	0	0	2	2	2	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146303355|ref|YP_001190671.1|	-	2.5e-08	34.1	0.0	6.3e-08	32.8	0.0	1.6	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|146303355|ref|YP_001190671.1|	-	7.5e-07	29.1	0.0	1.6e-06	28.1	0.0	1.5	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
PyrI_C	PF02748.10	gi|146303355|ref|YP_001190671.1|	-	0.067	12.6	0.3	0.64	9.4	0.0	2.3	2	0	0	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
tRNA-synt_1	PF00133.17	gi|146303356|ref|YP_001190672.1|	-	3.7e-59	200.2	0.0	4e-58	196.8	0.0	2.3	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1g	PF09334.6	gi|146303356|ref|YP_001190672.1|	-	1.4e-27	96.4	0.2	2.3e-12	46.3	0.0	3.9	3	1	1	4	4	4	3	tRNA	synthetases	class	I	(M)
Anticodon_1	PF08264.8	gi|146303356|ref|YP_001190672.1|	-	1.1e-18	67.4	1.0	3.1e-18	65.9	0.7	1.8	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1_2	PF13603.1	gi|146303356|ref|YP_001190672.1|	-	1e-10	41.2	0.0	2.1e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1e	PF01406.14	gi|146303356|ref|YP_001190672.1|	-	1.9e-09	37.0	0.0	0.00029	20.0	0.0	2.8	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
Choline_kin_N	PF04428.9	gi|146303356|ref|YP_001190672.1|	-	0.079	12.4	0.0	0.2	11.1	0.0	1.6	1	0	0	1	1	1	0	Choline	kinase	N	terminus
PLDc_2	PF13091.1	gi|146303357|ref|YP_001190673.1|	-	0.0035	17.0	1.1	0.005	16.5	0.0	1.7	2	1	0	2	2	2	1	PLD-like	domain
DUF2721	PF11026.3	gi|146303357|ref|YP_001190673.1|	-	0.014	15.0	0.2	5.5	6.6	0.1	2.3	1	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2721)
DUF2244	PF10003.4	gi|146303357|ref|YP_001190673.1|	-	0.023	14.0	0.2	0.049	13.0	0.2	1.5	1	0	0	1	1	1	0	Integral	membrane	protein	(DUF2244)
SAS4	PF15460.1	gi|146303357|ref|YP_001190673.1|	-	0.024	14.5	2.1	3.4	7.5	0.1	3.2	3	0	0	3	3	3	0	Something	about	silencing,	SAS,	complex	subunit	4
DUF846	PF05832.7	gi|146303357|ref|YP_001190673.1|	-	0.048	13.3	0.1	0.071	12.8	0.1	1.2	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF846)
DUF1097	PF06496.6	gi|146303357|ref|YP_001190673.1|	-	0.063	13.0	0.0	0.088	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1097)
Wzy_C	PF04932.10	gi|146303357|ref|YP_001190673.1|	-	0.11	12.2	0.2	0.15	11.7	0.1	1.2	1	0	0	1	1	1	0	O-Antigen	ligase
Apolipoprotein	PF01442.13	gi|146303357|ref|YP_001190673.1|	-	0.11	11.9	1.9	1.8	8.0	0.2	2.5	2	1	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DUF2839	PF10999.3	gi|146303357|ref|YP_001190673.1|	-	0.29	11.1	0.0	0.29	11.1	0.0	1.8	2	0	0	2	2	1	0	Protein	of	unknown	function	(DUF2839)
TAF8_C	PF10406.4	gi|146303357|ref|YP_001190673.1|	-	0.37	10.8	2.3	0.92	9.6	1.6	1.6	1	0	0	1	1	1	0	Transcription	factor	TFIID	complex	subunit	8	C-term
DUF3188	PF11384.3	gi|146303357|ref|YP_001190673.1|	-	0.4	10.3	3.5	0.78	9.3	2.4	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3188)
Peptidase_M1	PF01433.15	gi|146303358|ref|YP_001190674.1|	-	1.5e-108	363.4	0.1	2.2e-108	362.8	0.0	1.3	1	0	0	1	1	1	1	Peptidase	family	M1
Peptidase_MA_2	PF13485.1	gi|146303358|ref|YP_001190674.1|	-	1.2e-20	73.8	1.8	2.8e-20	72.6	0.1	2.2	2	0	0	2	2	2	1	Peptidase	MA	superfamily
ERAP1_C	PF11838.3	gi|146303358|ref|YP_001190674.1|	-	3.1e-18	66.0	0.0	4.5e-18	65.5	0.0	1.2	1	0	0	1	1	1	1	ERAP1-like	C-terminal	domain
DUF4476	PF14771.1	gi|146303358|ref|YP_001190674.1|	-	0.075	13.0	0.1	0.19	11.7	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4476)
Nol1_Nop2_Fmu	PF01189.12	gi|146303359|ref|YP_001190675.1|	-	3.6e-35	121.7	0.0	4.7e-35	121.3	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|146303359|ref|YP_001190675.1|	-	3e-07	30.1	0.0	6.1e-07	29.1	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303359|ref|YP_001190675.1|	-	6.9e-07	29.5	0.0	1.2e-06	28.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|146303359|ref|YP_001190675.1|	-	8.2e-06	25.4	0.0	1.3e-05	24.8	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MTS	PF05175.9	gi|146303359|ref|YP_001190675.1|	-	0.00086	18.7	0.0	0.0014	18.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|146303359|ref|YP_001190675.1|	-	0.0011	18.0	0.0	0.0019	17.3	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
FtsJ	PF01728.14	gi|146303359|ref|YP_001190675.1|	-	0.0023	17.9	0.0	0.0033	17.4	0.0	1.2	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_11	PF08241.7	gi|146303359|ref|YP_001190675.1|	-	0.012	16.0	0.0	0.03	14.7	0.0	1.7	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303359|ref|YP_001190675.1|	-	0.014	15.8	0.0	0.028	14.8	0.0	1.5	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146303359|ref|YP_001190675.1|	-	0.024	14.6	0.0	0.042	13.8	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
RrnaAD	PF00398.15	gi|146303359|ref|YP_001190675.1|	-	0.077	12.0	0.0	0.11	11.4	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Fibrillarin	PF01269.12	gi|146303359|ref|YP_001190675.1|	-	0.086	11.7	0.0	0.13	11.2	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Methyltransf_4	PF02390.12	gi|146303359|ref|YP_001190675.1|	-	0.1	11.6	0.0	0.18	10.8	0.0	1.3	1	0	0	1	1	1	0	Putative	methyltransferase
HCV_NS1	PF01560.12	gi|146303360|ref|YP_001190676.1|	-	0.32	9.4	2.3	0.39	9.1	1.6	1.1	1	0	0	1	1	1	0	Hepatitis	C	virus	non-structural	protein	E2/NS1
7kD_DNA_binding	PF02294.13	gi|146303362|ref|YP_001190678.1|	-	1.8e-35	120.3	4.7	2.1e-35	120.2	3.2	1.0	1	0	0	1	1	1	1	7kD	DNA-binding	domain
KorB_C	PF06613.6	gi|146303362|ref|YP_001190678.1|	-	0.051	13.0	0.0	0.15	11.5	0.0	1.7	2	0	0	2	2	2	0	KorB	C-terminal	beta-barrel	domain
Ribosomal_S5	PF00333.15	gi|146303362|ref|YP_001190678.1|	-	0.18	11.5	0.9	0.31	10.7	0.6	1.6	1	1	0	1	1	1	0	Ribosomal	protein	S5,	N-terminal	domain
HAD_2	PF13419.1	gi|146303364|ref|YP_001190680.1|	-	6.3e-18	65.5	0.0	7.3e-18	65.4	0.0	1.0	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|146303364|ref|YP_001190680.1|	-	3.3e-09	37.4	0.3	1.4e-07	32.1	0.2	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146303364|ref|YP_001190680.1|	-	7.3e-07	29.5	0.0	9.3e-07	29.1	0.0	1.1	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146303364|ref|YP_001190680.1|	-	0.0037	16.9	0.0	0.01	15.5	0.0	1.7	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase_6	PF13344.1	gi|146303364|ref|YP_001190680.1|	-	0.061	13.2	0.0	0.2	11.5	0.0	1.8	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
DUF790	PF05626.6	gi|146303365|ref|YP_001190681.1|	-	4.6e-107	357.8	0.0	6.1e-107	357.4	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF790)
HTH_AraC	PF00165.18	gi|146303365|ref|YP_001190681.1|	-	0.035	13.9	0.0	2.8	7.9	0.0	3.2	3	0	0	3	3	3	0	Bacterial	regulatory	helix-turn-helix	proteins,	AraC	family
HTH_10	PF04967.7	gi|146303365|ref|YP_001190681.1|	-	0.072	12.6	0.0	3	7.5	0.0	2.8	3	0	0	3	3	3	0	HTH	DNA	binding	domain
HTH_Tnp_1	PF01527.15	gi|146303365|ref|YP_001190681.1|	-	0.11	12.5	0.0	1.3	9.0	0.0	2.4	2	0	0	2	2	2	0	Transposase
ResIII	PF04851.10	gi|146303366|ref|YP_001190682.1|	-	7.7e-25	87.7	0.0	6.1e-23	81.5	0.0	3.0	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|146303366|ref|YP_001190682.1|	-	5.9e-17	61.2	0.1	3.9e-16	58.6	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|146303366|ref|YP_001190682.1|	-	2.1e-10	40.3	0.0	1e-09	38.1	0.0	2.1	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
SNF2_N	PF00176.18	gi|146303366|ref|YP_001190682.1|	-	1e-09	37.6	0.0	1.8e-05	23.6	0.0	2.8	1	1	1	2	2	2	2	SNF2	family	N-terminal	domain
Helicase_C_2	PF13307.1	gi|146303366|ref|YP_001190682.1|	-	0.0045	16.9	0.6	0.099	12.5	0.0	2.7	3	1	0	4	4	4	1	Helicase	C-terminal	domain
RHH_2	PF03693.9	gi|146303366|ref|YP_001190682.1|	-	0.033	14.3	0.2	9.9	6.4	0.0	2.6	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0156)
AAA_30	PF13604.1	gi|146303366|ref|YP_001190682.1|	-	0.073	12.6	0.1	0.39	10.2	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
Peripla_BP_1	PF00532.16	gi|146303366|ref|YP_001190682.1|	-	0.17	11.0	0.0	0.69	9.0	0.0	2.0	3	0	0	3	3	3	0	Periplasmic	binding	proteins	and	sugar	binding	domain	of	LacI	family
Lactamase_B_2	PF12706.2	gi|146303367|ref|YP_001190683.1|	-	1.7e-07	30.9	0.0	2.4e-07	30.4	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146303367|ref|YP_001190683.1|	-	1.9e-07	30.9	3.3	7.1e-07	29.0	2.3	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|146303367|ref|YP_001190683.1|	-	3.1e-06	27.0	0.0	4.5e-06	26.4	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
DHH	PF01368.15	gi|146303367|ref|YP_001190683.1|	-	0.01	15.4	0.0	0.27	10.8	0.0	2.2	2	0	0	2	2	2	0	DHH	family
LacI	PF00356.16	gi|146303367|ref|YP_001190683.1|	-	0.11	12.1	0.0	0.31	10.7	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	lacI	family
VIT1	PF01988.14	gi|146303368|ref|YP_001190684.1|	-	3.9e-52	176.8	2.5	4.4e-52	176.6	1.8	1.0	1	0	0	1	1	1	1	VIT	family
DUF2149	PF09919.4	gi|146303368|ref|YP_001190684.1|	-	0.0095	16.0	0.3	5.2	7.2	0.0	2.5	2	0	0	2	2	2	2	Uncharacterized	conserved	protein	(DUF2149)
AAA_assoc_C	PF09821.4	gi|146303369|ref|YP_001190685.1|	-	4.3e-36	123.7	0.1	5.6e-36	123.4	0.1	1.1	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
HTH_45	PF14947.1	gi|146303369|ref|YP_001190685.1|	-	0.0082	15.9	0.1	0.36	10.6	0.0	2.3	1	1	1	2	2	2	1	Winged	helix-turn-helix
Glyco_hydro_80	PF13647.1	gi|146303369|ref|YP_001190685.1|	-	0.065	12.4	0.0	0.095	11.9	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	80	of	chitosanase	A
DUF3488	PF11992.3	gi|146303370|ref|YP_001190686.1|	-	0.3	9.6	7.1	0.36	9.4	4.9	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3488)
AA_permease_2	PF13520.1	gi|146303371|ref|YP_001190687.1|	-	1.2e-13	50.4	30.3	1.2e-13	50.4	21.0	2.1	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303371|ref|YP_001190687.1|	-	6.2e-06	24.8	38.0	6.2e-06	24.8	26.3	2.1	1	1	0	1	1	1	1	Amino	acid	permease
PaREP1	PF05942.6	gi|146303372|ref|YP_001190688.1|	-	2.6e-13	49.8	0.3	2.6e-13	49.8	0.2	1.5	2	0	0	2	2	2	1	Archaeal	PaREP1/PaREP8	family
DCD	PF06559.6	gi|146303372|ref|YP_001190688.1|	-	0.056	11.8	0.0	0.071	11.4	0.0	1.1	1	0	0	1	1	1	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
HEPN	PF05168.9	gi|146303372|ref|YP_001190688.1|	-	0.12	12.2	3.1	1.1	9.1	2.1	2.4	1	1	0	1	1	1	0	HEPN	domain
HTH_IclR	PF09339.5	gi|146303374|ref|YP_001190690.1|	-	1.4e-06	27.7	0.0	2.1e-06	27.2	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|146303374|ref|YP_001190690.1|	-	2e-06	27.3	0.2	4.4e-06	26.2	0.1	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146303374|ref|YP_001190690.1|	-	1e-05	24.8	0.2	2.3e-05	23.7	0.2	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|146303374|ref|YP_001190690.1|	-	0.00078	19.0	0.1	0.0018	17.9	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|146303374|ref|YP_001190690.1|	-	0.0033	17.1	0.1	0.0056	16.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|146303374|ref|YP_001190690.1|	-	0.023	15.0	0.1	0.04	14.2	0.1	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF2250	PF10007.4	gi|146303374|ref|YP_001190690.1|	-	0.049	13.5	0.1	0.08	12.8	0.1	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_AsnC-type	PF13404.1	gi|146303374|ref|YP_001190690.1|	-	0.083	12.4	2.4	0.22	11.0	1.6	1.7	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
NPCBM_assoc	PF10633.4	gi|146303375|ref|YP_001190691.1|	-	3.9e-13	49.2	18.6	0.01	15.8	0.0	9.0	8	3	1	9	9	9	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
CARDB	PF07705.6	gi|146303375|ref|YP_001190691.1|	-	0.00014	21.8	23.5	0.14	12.2	0.3	7.1	6	1	2	8	8	8	3	CARDB
EIAV_Rev	PF11129.3	gi|146303375|ref|YP_001190691.1|	-	0.045	13.7	0.0	17	5.3	0.0	2.6	3	0	0	3	3	3	0	Rev	protein	of	equine	infectious	anaemia	virus
DUF4625	PF15418.1	gi|146303375|ref|YP_001190691.1|	-	0.17	11.9	0.0	1.6	8.8	0.0	2.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4625)
DUF11	PF01345.13	gi|146303375|ref|YP_001190691.1|	-	2	8.5	24.3	0.22	11.5	0.6	6.5	7	0	0	7	7	7	0	Domain	of	unknown	function	DUF11
Rifin_STEVOR	PF02009.11	gi|146303375|ref|YP_001190691.1|	-	7.4	6.1	6.8	11	5.5	4.7	1.2	1	0	0	1	1	1	0	Rifin/stevor	family
MS_channel	PF00924.13	gi|146303376|ref|YP_001190692.1|	-	1.8e-21	76.4	0.6	1.8e-21	76.4	0.4	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Rhomboid	PF01694.17	gi|146303376|ref|YP_001190692.1|	-	2.1	8.3	11.1	3.4	7.6	7.7	1.3	1	0	0	1	1	1	0	Rhomboid	family
DUF2842	PF11003.3	gi|146303376|ref|YP_001190692.1|	-	4.8	7.1	11.3	6.1	6.7	1.1	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2842)
NUDIX	PF00293.23	gi|146303378|ref|YP_001190694.1|	-	5.2e-23	81.1	0.0	7.1e-23	80.7	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_4	PF14815.1	gi|146303378|ref|YP_001190694.1|	-	2.3e-06	27.0	0.0	3.8e-06	26.2	0.0	1.4	1	1	0	1	1	1	1	NUDIX	domain
GAF_3	PF13492.1	gi|146303378|ref|YP_001190694.1|	-	0.049	13.7	0.0	0.066	13.3	0.0	1.2	1	0	0	1	1	1	0	GAF	domain
Cu_amine_oxidN3	PF02728.11	gi|146303378|ref|YP_001190694.1|	-	0.09	12.8	0.0	0.16	12.0	0.0	1.5	1	1	0	1	1	1	0	Copper	amine	oxidase,	N3	domain
TIP49	PF06068.8	gi|146303379|ref|YP_001190695.1|	-	9.6e-153	508.6	2.2	1.2e-152	508.3	1.6	1.1	1	0	0	1	1	1	1	TIP49	C-terminus
AAA	PF00004.24	gi|146303379|ref|YP_001190695.1|	-	6e-10	39.4	0.3	2.8e-07	30.7	0.0	2.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|146303379|ref|YP_001190695.1|	-	2.8e-08	33.0	1.7	5.4e-06	25.6	0.0	3.1	2	1	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_16	PF13191.1	gi|146303379|ref|YP_001190695.1|	-	1.7e-06	28.1	1.0	0.0034	17.3	0.0	2.6	3	1	0	3	3	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|146303379|ref|YP_001190695.1|	-	4e-06	27.0	0.6	0.015	15.4	0.0	2.8	2	2	1	3	3	3	2	AAA	domain
Mg_chelatase	PF01078.16	gi|146303379|ref|YP_001190695.1|	-	1.7e-05	24.0	0.2	0.0001	21.5	0.0	2.0	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_5	PF07728.9	gi|146303379|ref|YP_001190695.1|	-	5.5e-05	22.9	0.1	0.0036	17.0	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|146303379|ref|YP_001190695.1|	-	0.00012	21.7	0.1	0.00044	19.9	0.1	1.9	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_25	PF13481.1	gi|146303379|ref|YP_001190695.1|	-	0.00016	21.1	0.4	0.00052	19.4	0.2	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146303379|ref|YP_001190695.1|	-	0.00034	21.4	0.1	0.0014	19.4	0.0	2.2	2	1	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|146303379|ref|YP_001190695.1|	-	0.00037	20.3	0.0	0.0013	18.6	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.12	gi|146303379|ref|YP_001190695.1|	-	0.00083	18.8	0.1	0.0021	17.4	0.1	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
DUF2075	PF09848.4	gi|146303379|ref|YP_001190695.1|	-	0.0019	17.2	0.0	0.0035	16.3	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.1	gi|146303379|ref|YP_001190695.1|	-	0.0024	18.1	0.0	0.008	16.4	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
NACHT	PF05729.7	gi|146303379|ref|YP_001190695.1|	-	0.0045	16.6	0.0	0.01	15.5	0.0	1.6	1	0	0	1	1	1	1	NACHT	domain
DnaB_C	PF03796.10	gi|146303379|ref|YP_001190695.1|	-	0.0058	15.5	0.1	0.015	14.2	0.0	1.7	2	0	0	2	2	2	1	DnaB-like	helicase	C	terminal	domain
UPF0079	PF02367.12	gi|146303379|ref|YP_001190695.1|	-	0.011	15.3	0.1	0.028	14.0	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
Sigma54_activat	PF00158.21	gi|146303379|ref|YP_001190695.1|	-	0.012	15.1	0.1	0.11	11.9	0.0	2.2	2	0	0	2	2	2	0	Sigma-54	interaction	domain
Zeta_toxin	PF06414.7	gi|146303379|ref|YP_001190695.1|	-	0.018	14.1	0.1	0.034	13.2	0.1	1.4	1	0	0	1	1	1	0	Zeta	toxin
AAA_30	PF13604.1	gi|146303379|ref|YP_001190695.1|	-	0.019	14.5	0.4	2.8	7.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|146303379|ref|YP_001190695.1|	-	0.021	15.0	0.0	0.042	14.0	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
Collagen_bind_2	PF12904.2	gi|146303379|ref|YP_001190695.1|	-	0.031	14.0	0.0	0.096	12.4	0.0	1.8	1	0	0	1	1	1	0	Putative	collagen-binding	domain	of	a	collagenase
AAA_11	PF13086.1	gi|146303379|ref|YP_001190695.1|	-	0.033	13.7	0.0	0.051	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|146303379|ref|YP_001190695.1|	-	0.033	13.8	1.0	0.5	10.0	0.4	2.6	1	1	0	1	1	1	0	Archaeal	ATPase
PhoH	PF02562.11	gi|146303379|ref|YP_001190695.1|	-	0.04	13.1	0.1	0.094	11.9	0.1	1.6	1	0	0	1	1	1	0	PhoH-like	protein
DUF815	PF05673.8	gi|146303379|ref|YP_001190695.1|	-	0.067	12.0	0.1	0.14	11.0	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF815)
AAA_14	PF13173.1	gi|146303379|ref|YP_001190695.1|	-	0.073	12.9	0.0	0.88	9.4	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.22	gi|146303379|ref|YP_001190695.1|	-	0.1	12.8	0.1	0.28	11.4	0.1	1.8	1	0	0	1	1	1	0	ABC	transporter
TFIID-31kDa	PF02291.10	gi|146303379|ref|YP_001190695.1|	-	0.12	12.1	0.2	0.62	9.8	0.0	2.1	2	0	0	2	2	2	0	Transcription	initiation	factor	IID,	31kD	subunit
PfkB	PF00294.19	gi|146303380|ref|YP_001190696.1|	-	1.9e-30	106.0	0.1	5.2e-29	101.3	0.1	2.2	1	1	0	1	1	1	1	pfkB	family	carbohydrate	kinase
IMS	PF00817.15	gi|146303381|ref|YP_001190697.1|	-	3.2e-45	153.5	0.3	9.6e-45	152.0	0.1	1.8	2	1	0	2	2	2	1	impB/mucB/samB	family
IMS_HHH	PF11798.3	gi|146303381|ref|YP_001190697.1|	-	7.9e-09	35.0	0.8	2.2e-08	33.6	0.0	2.3	2	0	0	2	2	2	1	IMS	family	HHH	motif
IMS_C	PF11799.3	gi|146303381|ref|YP_001190697.1|	-	0.0032	17.4	1.4	0.019	14.8	0.1	2.7	2	2	0	2	2	2	1	impB/mucB/samB	family	C-terminal	domain
HHH_5	PF14520.1	gi|146303381|ref|YP_001190697.1|	-	0.004	17.2	0.2	0.022	14.9	0.0	2.3	2	0	0	2	2	2	1	Helix-hairpin-helix	domain
Cdd1	PF11731.3	gi|146303381|ref|YP_001190697.1|	-	0.098	12.5	0.0	0.23	11.4	0.0	1.7	1	1	0	1	1	1	0	Pathogenicity	locus
E1-N	PF14463.1	gi|146303382|ref|YP_001190698.1|	-	0.012	15.2	0.0	0.033	13.7	0.0	1.7	1	1	1	2	2	2	0	E1	N-terminal	domain
RTC	PF01137.16	gi|146303383|ref|YP_001190699.1|	-	7.9e-77	257.0	0.4	9.6e-77	256.8	0.3	1.1	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase
RTC_insert	PF05189.8	gi|146303383|ref|YP_001190699.1|	-	9.7e-23	80.1	0.5	1.6e-22	79.4	0.3	1.4	1	0	0	1	1	1	1	RNA	3'-terminal	phosphate	cyclase	(RTC),	insert	domain
ADH_N	PF08240.7	gi|146303384|ref|YP_001190700.1|	-	8.2e-18	64.1	2.4	9.8e-18	63.9	0.3	2.1	2	1	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146303384|ref|YP_001190700.1|	-	1.8e-15	56.6	0.1	4.7e-15	55.2	0.0	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146303384|ref|YP_001190700.1|	-	3.1e-10	41.0	0.0	5.4e-10	40.2	0.0	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
TrkA_N	PF02254.13	gi|146303384|ref|YP_001190700.1|	-	0.00014	21.7	0.0	0.03	14.3	0.0	1.7	1	1	1	2	2	2	2	TrkA-N	domain
AlaDh_PNT_C	PF01262.16	gi|146303384|ref|YP_001190700.1|	-	0.0022	17.5	0.1	0.0032	17.0	0.0	1.2	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
2-Hacid_dh_C	PF02826.14	gi|146303384|ref|YP_001190700.1|	-	0.032	13.3	0.0	0.051	12.7	0.0	1.2	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|146303384|ref|YP_001190700.1|	-	0.082	13.1	0.0	0.24	11.6	0.0	1.7	1	1	0	1	1	1	0	Putative	NAD(P)-binding
Shikimate_DH	PF01488.15	gi|146303384|ref|YP_001190700.1|	-	0.1	12.7	0.1	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Pyr_redox	PF00070.22	gi|146303384|ref|YP_001190700.1|	-	0.1	13.0	0.1	0.22	11.9	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303384|ref|YP_001190700.1|	-	0.1	12.6	0.0	0.16	12.0	0.0	1.3	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|146303384|ref|YP_001190700.1|	-	0.13	11.6	0.0	0.2	11.0	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
Gln-synt_C	PF00120.19	gi|146303385|ref|YP_001190701.1|	-	2.6e-59	200.4	0.0	3.2e-59	200.1	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|146303385|ref|YP_001190701.1|	-	0.0025	17.3	0.2	0.038	13.5	0.1	2.7	2	1	0	2	2	2	1	Glutamine	synthetase,	beta-Grasp	domain
Met_10	PF02475.11	gi|146303386|ref|YP_001190702.1|	-	2.8e-42	144.5	0.0	3.3e-42	144.3	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
MTS	PF05175.9	gi|146303386|ref|YP_001190702.1|	-	0.0019	17.6	0.0	0.0031	16.9	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|146303386|ref|YP_001190702.1|	-	0.0021	18.6	0.0	0.0037	17.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146303386|ref|YP_001190702.1|	-	0.051	13.6	0.0	0.13	12.3	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
DUF4112	PF13430.1	gi|146303386|ref|YP_001190702.1|	-	0.13	12.1	0.1	0.24	11.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4112)
Amidohydro_5	PF13594.1	gi|146303387|ref|YP_001190703.1|	-	0.001	18.8	0.0	0.0022	17.7	0.0	1.5	1	0	0	1	1	1	1	Amidohydrolase
SIS	PF01380.17	gi|146303388|ref|YP_001190704.1|	-	5.4e-11	42.2	0.1	0.00035	20.1	0.0	3.0	3	0	0	3	3	3	2	SIS	domain
DUF1132	PF06575.7	gi|146303389|ref|YP_001190705.1|	-	0.098	12.9	0.0	0.12	12.6	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1132)
DUF1404	PF07185.6	gi|146303390|ref|YP_001190706.1|	-	3e-06	26.9	11.1	3e-06	26.9	7.7	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1404)
DUF1625	PF07787.7	gi|146303390|ref|YP_001190706.1|	-	0.0075	15.5	3.5	0.0075	15.5	2.4	1.6	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1625)
DUF2873	PF11395.3	gi|146303390|ref|YP_001190706.1|	-	0.08	12.5	0.5	0.08	12.5	0.3	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2873)
Vma12	PF11712.3	gi|146303390|ref|YP_001190706.1|	-	1.2	8.8	3.9	2.4	7.8	2.7	1.6	1	0	0	1	1	1	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
TP_methylase	PF00590.15	gi|146303391|ref|YP_001190707.1|	-	1.3e-45	155.7	0.0	1.5e-45	155.4	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
FAD_binding_5	PF00941.16	gi|146303392|ref|YP_001190708.1|	-	9.9e-48	161.7	0.0	1.3e-47	161.3	0.0	1.2	1	0	0	1	1	1	1	FAD	binding	domain	in	molybdopterin	dehydrogenase
CO_deh_flav_C	PF03450.12	gi|146303392|ref|YP_001190708.1|	-	9.6e-28	96.1	1.0	1.5e-27	95.5	0.7	1.3	1	0	0	1	1	1	1	CO	dehydrogenase	flavoprotein	C-terminal	domain
FAD_binding_4	PF01565.18	gi|146303392|ref|YP_001190708.1|	-	0.00077	18.9	0.0	0.0014	18.1	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Fer2_2	PF01799.15	gi|146303393|ref|YP_001190709.1|	-	1.2e-36	124.4	0.7	3.2e-36	123.0	0.0	1.9	2	0	0	2	2	2	1	[2Fe-2S]	binding	domain
Fer2	PF00111.22	gi|146303393|ref|YP_001190709.1|	-	8.1e-08	31.9	0.5	8.1e-08	31.9	0.4	1.9	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer2_3	PF13085.1	gi|146303393|ref|YP_001190709.1|	-	0.002	17.9	1.2	0.002	17.9	0.8	1.6	1	1	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
IF3_C	PF00707.17	gi|146303393|ref|YP_001190709.1|	-	0.089	12.5	0.2	0.16	11.7	0.1	1.4	1	0	0	1	1	1	0	Translation	initiation	factor	IF-3,	C-terminal	domain
NTP_transf_3	PF12804.2	gi|146303394|ref|YP_001190710.1|	-	8.1e-36	123.5	0.0	9.7e-36	123.2	0.0	1.0	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|146303394|ref|YP_001190710.1|	-	0.011	15.2	0.0	0.032	13.7	0.0	1.6	1	1	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
CofC	PF01983.11	gi|146303394|ref|YP_001190710.1|	-	0.085	11.8	0.2	0.3	10.0	0.1	1.8	1	1	0	1	1	1	0	Guanylyl	transferase	CofC	like
Fer4_8	PF13183.1	gi|146303395|ref|YP_001190711.1|	-	1.1e-09	38.2	6.4	2.1e-09	37.2	4.4	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
FAD_binding_4	PF01565.18	gi|146303395|ref|YP_001190711.1|	-	4.1e-08	32.7	0.0	9.9e-08	31.5	0.0	1.5	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_7	PF12838.2	gi|146303395|ref|YP_001190711.1|	-	1e-07	32.2	6.8	2.7e-07	30.8	4.7	1.8	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303395|ref|YP_001190711.1|	-	1.5e-07	31.6	2.9	0.0023	18.3	0.3	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303395|ref|YP_001190711.1|	-	5.4e-07	29.8	6.8	1.3e-06	28.6	4.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146303395|ref|YP_001190711.1|	-	5.4e-06	26.1	3.5	1.2e-05	25.0	2.4	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303395|ref|YP_001190711.1|	-	2e-05	24.7	11.3	0.00042	20.5	8.2	2.7	2	1	2	4	4	3	3	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303395|ref|YP_001190711.1|	-	4.3e-05	22.9	14.4	0.0015	18.0	2.6	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146303395|ref|YP_001190711.1|	-	0.00018	21.2	10.1	0.0041	16.8	8.0	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303395|ref|YP_001190711.1|	-	0.00054	20.0	13.7	0.036	14.3	1.8	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146303395|ref|YP_001190711.1|	-	0.0012	18.6	10.9	0.052	13.4	1.8	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303395|ref|YP_001190711.1|	-	0.036	13.9	12.2	0.15	12.0	1.9	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
FerA	PF08165.6	gi|146303395|ref|YP_001190711.1|	-	0.13	11.9	0.0	0.27	10.9	0.0	1.5	1	0	0	1	1	1	0	FerA	(NUC095)	domain
Fer4_20	PF14691.1	gi|146303395|ref|YP_001190711.1|	-	0.15	11.6	2.7	0.69	9.5	0.1	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.1	gi|146303395|ref|YP_001190711.1|	-	0.23	12.2	12.4	5.4	7.8	8.8	2.5	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|146303395|ref|YP_001190711.1|	-	0.56	10.9	18.6	0.6	10.8	4.1	2.8	2	0	0	2	2	2	0	4Fe-4S	binding	domain
GHMP_kinases_N	PF00288.21	gi|146303396|ref|YP_001190712.1|	-	2.7e-08	33.7	0.2	4.2e-08	33.1	0.2	1.3	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
DUF137	PF02006.11	gi|146303397|ref|YP_001190713.1|	-	1.5e-76	255.7	2.8	1.9e-76	255.4	2.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF137
Pantoate_transf	PF02548.10	gi|146303398|ref|YP_001190714.1|	-	1e-102	342.7	0.2	1.2e-102	342.5	0.1	1.0	1	0	0	1	1	1	1	Ketopantoate	hydroxymethyltransferase
PEP_mutase	PF13714.1	gi|146303398|ref|YP_001190714.1|	-	1.8e-06	27.3	0.1	3.9e-05	22.9	0.0	2.2	2	0	0	2	2	2	2	Phosphoenolpyruvate	phosphomutase
ABC_tran	PF00005.22	gi|146303400|ref|YP_001190716.1|	-	2.2e-26	92.7	0.0	3e-26	92.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303400|ref|YP_001190716.1|	-	7.2e-14	52.4	0.8	2.8e-07	30.7	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146303400|ref|YP_001190716.1|	-	0.00012	21.3	0.1	0.1	11.8	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|146303400|ref|YP_001190716.1|	-	0.00024	21.4	0.3	0.00039	20.7	0.2	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146303400|ref|YP_001190716.1|	-	0.0064	17.2	0.3	0.013	16.3	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|146303400|ref|YP_001190716.1|	-	0.011	15.2	0.1	0.021	14.3	0.1	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ArgK	PF03308.11	gi|146303400|ref|YP_001190716.1|	-	0.037	12.8	0.1	0.058	12.1	0.1	1.2	1	0	0	1	1	1	0	ArgK	protein
AAA_30	PF13604.1	gi|146303400|ref|YP_001190716.1|	-	0.066	12.7	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|146303400|ref|YP_001190716.1|	-	0.066	11.6	0.3	2.3	6.5	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_28	PF13521.1	gi|146303400|ref|YP_001190716.1|	-	0.11	12.4	0.0	0.18	11.7	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|146303400|ref|YP_001190716.1|	-	0.11	11.6	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|146303400|ref|YP_001190716.1|	-	0.15	12.0	0.0	0.17	11.8	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
ABC2_membrane_3	PF12698.2	gi|146303401|ref|YP_001190717.1|	-	1.7e-17	63.4	36.0	3e-17	62.6	24.9	1.3	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_4	PF12730.2	gi|146303401|ref|YP_001190717.1|	-	7.7e-12	44.8	32.1	1.4e-11	44.0	22.3	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.2	gi|146303401|ref|YP_001190717.1|	-	1e-09	37.6	24.3	9.9e-09	34.4	16.9	2.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
AsnC_trans_reg	PF01037.16	gi|146303402|ref|YP_001190718.1|	-	6.7e-11	41.7	0.1	7.3e-11	41.6	0.1	1.1	1	0	0	1	1	1	1	AsnC	family
ACT_4	PF13291.1	gi|146303402|ref|YP_001190718.1|	-	0.042	14.1	0.6	0.77	10.1	0.1	2.1	1	1	0	2	2	2	0	ACT	domain
NapD	PF03927.8	gi|146303402|ref|YP_001190718.1|	-	0.074	12.8	0.0	2.2	8.1	0.0	2.0	1	1	1	2	2	2	0	NapD	protein
Latarcin	PF10279.4	gi|146303402|ref|YP_001190718.1|	-	0.081	13.1	0.1	2.7	8.2	0.0	2.0	2	0	0	2	2	2	0	Latarcin	precursor
RHH_1	PF01402.16	gi|146303403|ref|YP_001190719.1|	-	0.0058	16.4	0.0	0.02	14.7	0.0	1.9	2	1	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
BLOC1_2	PF10046.4	gi|146303403|ref|YP_001190719.1|	-	0.033	14.3	1.1	0.047	13.8	0.8	1.3	1	1	0	1	1	1	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
RHH_1	PF01402.16	gi|146303404|ref|YP_001190720.1|	-	6.7e-10	38.4	0.7	1.1e-09	37.7	0.3	1.5	1	1	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|146303404|ref|YP_001190720.1|	-	0.004	16.8	0.6	0.0052	16.4	0.4	1.3	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
Lactamase_B_3	PF13483.1	gi|146303405|ref|YP_001190721.1|	-	3.9e-26	91.7	0.0	5e-26	91.3	0.0	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|146303405|ref|YP_001190721.1|	-	4e-10	39.5	0.2	5.7e-05	22.7	0.0	2.1	1	1	1	2	2	2	2	Beta-lactamase	superfamily	domain
HMGL-like	PF00682.14	gi|146303406|ref|YP_001190722.1|	-	6.7e-81	271.4	1.6	9.7e-81	270.8	1.1	1.2	1	0	0	1	1	1	1	HMGL-like
AP_endonuc_2	PF01261.19	gi|146303406|ref|YP_001190722.1|	-	0.11	11.8	0.3	2.9	7.1	0.1	3.2	2	1	0	2	2	2	0	Xylose	isomerase-like	TIM	barrel
MAF_flag10	PF01973.13	gi|146303407|ref|YP_001190723.1|	-	1.4e-21	76.7	0.0	1.8e-21	76.3	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF115
Peptidase_C9	PF01707.11	gi|146303407|ref|YP_001190723.1|	-	0.0099	15.4	0.1	0.27	10.8	0.0	2.0	1	1	1	2	2	2	1	Peptidase	family	C9
TPK_catalytic	PF04263.11	gi|146303407|ref|YP_001190723.1|	-	0.014	14.9	0.1	0.029	13.9	0.0	1.5	2	0	0	2	2	2	0	Thiamin	pyrophosphokinase,	catalytic	domain
HEPN	PF05168.9	gi|146303409|ref|YP_001190725.1|	-	0.00021	21.1	0.0	0.00029	20.7	0.0	1.3	1	1	0	1	1	1	1	HEPN	domain
Med30	PF11315.3	gi|146303409|ref|YP_001190725.1|	-	0.045	13.8	0.0	0.37	10.9	0.0	2.1	2	1	0	2	2	2	0	Mediator	complex	subunit	30
PK	PF00224.16	gi|146303409|ref|YP_001190725.1|	-	0.05	12.2	0.0	0.053	12.1	0.0	1.1	1	0	0	1	1	1	0	Pyruvate	kinase,	barrel	domain
FliM	PF02154.10	gi|146303409|ref|YP_001190725.1|	-	0.13	11.9	0.1	0.18	11.4	0.0	1.2	1	0	0	1	1	1	0	Flagellar	motor	switch	protein	FliM
B-block_TFIIIC	PF04182.7	gi|146303410|ref|YP_001190726.1|	-	0.05	13.4	0.0	0.088	12.6	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
Prefoldin_3	PF13758.1	gi|146303411|ref|YP_001190727.1|	-	0.071	12.8	0.2	1.6	8.5	0.0	2.2	2	0	0	2	2	2	0	Prefoldin	subunit
PTPS	PF01242.14	gi|146303412|ref|YP_001190728.1|	-	3.9e-24	84.6	0.0	4.6e-24	84.4	0.0	1.0	1	0	0	1	1	1	1	6-pyruvoyl	tetrahydropterin	synthase
DUF866	PF05907.8	gi|146303413|ref|YP_001190729.1|	-	0.043	13.3	0.1	0.058	12.8	0.1	1.1	1	0	0	1	1	1	0	Eukaryotic	protein	of	unknown	function	(DUF866)
CdhD	PF03599.11	gi|146303414|ref|YP_001190730.1|	-	5.2e-05	21.9	0.0	0.00021	19.9	0.0	1.8	2	0	0	2	2	2	1	CO	dehydrogenase/acetyl-CoA	synthase	delta	subunit
DUF4346	PF14251.1	gi|146303414|ref|YP_001190730.1|	-	0.00032	20.4	0.1	0.001	18.7	0.0	1.9	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4346)
DUF512	PF04459.7	gi|146303414|ref|YP_001190730.1|	-	0.0053	15.8	0.0	0.012	14.6	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF512)
Pterin_bind	PF00809.17	gi|146303414|ref|YP_001190730.1|	-	0.039	13.3	0.2	0.22	10.8	0.1	2.2	1	1	1	2	2	2	0	Pterin	binding	enzyme
Pyr_redox_2	PF07992.9	gi|146303415|ref|YP_001190731.1|	-	1e-31	110.3	0.4	1.4e-31	109.9	0.3	1.1	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303415|ref|YP_001190731.1|	-	1.4e-15	57.8	0.0	7.7e-15	55.5	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303415|ref|YP_001190731.1|	-	2.8e-13	50.0	0.5	2.8e-13	50.0	0.4	2.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303415|ref|YP_001190731.1|	-	3.8e-06	25.6	0.8	0.017	13.6	0.0	3.2	3	0	0	3	3	3	2	HI0933-like	protein
K_oxygenase	PF13434.1	gi|146303415|ref|YP_001190731.1|	-	4.8e-06	25.7	0.1	0.0043	16.0	0.0	3.0	2	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.19	gi|146303415|ref|YP_001190731.1|	-	1.7e-05	23.8	3.9	0.45	9.3	0.1	4.0	2	1	1	3	3	3	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146303415|ref|YP_001190731.1|	-	6.9e-05	22.1	1.4	0.024	13.7	0.0	2.6	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|146303415|ref|YP_001190731.1|	-	0.00032	19.8	0.4	0.35	9.9	0.0	2.6	2	1	0	2	2	2	2	Thi4	family
NAD_binding_7	PF13241.1	gi|146303415|ref|YP_001190731.1|	-	0.0005	20.2	1.1	0.02	15.1	0.2	2.4	2	0	0	2	2	2	1	Putative	NAD(P)-binding
DAO	PF01266.19	gi|146303415|ref|YP_001190731.1|	-	0.00052	19.0	4.7	0.062	12.1	0.8	3.7	2	1	0	2	2	2	2	FAD	dependent	oxidoreductase
FMO-like	PF00743.14	gi|146303415|ref|YP_001190731.1|	-	0.00079	17.7	0.0	0.0011	17.2	0.0	1.1	1	0	0	1	1	1	1	Flavin-binding	monooxygenase-like
GIDA	PF01134.17	gi|146303415|ref|YP_001190731.1|	-	0.0032	16.4	7.2	1.6	7.4	0.1	4.3	3	2	2	5	5	5	2	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.1	gi|146303415|ref|YP_001190731.1|	-	0.027	14.2	0.3	1.8	8.3	0.0	3.0	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|146303415|ref|YP_001190731.1|	-	0.036	12.9	1.1	12	4.6	0.0	3.2	3	1	0	3	3	3	0	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.16	gi|146303415|ref|YP_001190731.1|	-	0.05	13.1	1.1	13	5.2	0.0	3.4	3	1	1	4	4	4	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Mqo	PF06039.10	gi|146303415|ref|YP_001190731.1|	-	0.091	10.9	0.0	0.14	10.2	0.0	1.2	1	0	0	1	1	1	0	Malate:quinone	oxidoreductase	(Mqo)
FAD_binding_3	PF01494.14	gi|146303415|ref|YP_001190731.1|	-	0.11	11.5	0.0	0.49	9.3	0.0	1.9	2	0	0	2	2	2	0	FAD	binding	domain
Shikimate_DH	PF01488.15	gi|146303415|ref|YP_001190731.1|	-	0.11	12.6	0.3	0.46	10.5	0.1	2.0	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
Inositol_P	PF00459.20	gi|146303416|ref|YP_001190732.1|	-	2e-29	102.7	0.0	2.1e-29	102.6	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.15	gi|146303416|ref|YP_001190732.1|	-	0.0001	21.3	0.0	0.00013	20.9	0.0	1.2	1	0	0	1	1	1	1	Fructose-1-6-bisphosphatase
AAA	PF00004.24	gi|146303417|ref|YP_001190733.1|	-	1.3e-82	274.5	0.0	2.4e-40	137.7	0.1	2.5	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|146303417|ref|YP_001190733.1|	-	4.8e-15	56.4	0.6	8.3e-07	29.8	0.1	3.2	3	1	0	3	3	2	2	AAA	domain
AAA_14	PF13173.1	gi|146303417|ref|YP_001190733.1|	-	5e-15	55.5	0.2	5.6e-07	29.5	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
AAA_2	PF07724.9	gi|146303417|ref|YP_001190733.1|	-	8.7e-14	51.7	4.3	2.5e-07	30.7	0.0	3.7	5	0	0	5	5	3	2	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|146303417|ref|YP_001190733.1|	-	3.6e-13	49.1	0.1	7.7e-06	25.1	0.0	3.9	5	0	0	5	5	4	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_22	PF13401.1	gi|146303417|ref|YP_001190733.1|	-	3.8e-12	46.4	4.1	0.0009	19.3	0.5	5.1	3	2	0	3	3	3	2	AAA	domain
AAA_5	PF07728.9	gi|146303417|ref|YP_001190733.1|	-	1.2e-10	41.2	3.7	0.00072	19.2	0.6	4.2	3	2	0	3	3	2	2	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|146303417|ref|YP_001190733.1|	-	2.9e-10	40.4	0.1	0.0011	19.0	0.0	3.5	2	2	1	3	3	3	2	AAA	ATPase	domain
AAA_33	PF13671.1	gi|146303417|ref|YP_001190733.1|	-	1.5e-08	34.5	0.0	0.007	16.2	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
AAA_18	PF13238.1	gi|146303417|ref|YP_001190733.1|	-	2.3e-08	34.3	0.0	0.0011	19.3	0.0	3.0	2	0	0	2	2	2	2	AAA	domain
RNA_helicase	PF00910.17	gi|146303417|ref|YP_001190733.1|	-	2.8e-08	33.9	0.0	0.005	17.0	0.0	3.3	3	0	0	3	3	2	2	RNA	helicase
IstB_IS21	PF01695.12	gi|146303417|ref|YP_001190733.1|	-	3.2e-08	33.1	0.1	0.0049	16.3	0.1	2.8	2	1	1	3	3	2	2	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|146303417|ref|YP_001190733.1|	-	3.6e-08	33.0	0.9	0.0036	16.7	0.5	3.3	2	1	0	2	2	2	2	AAA	domain
NACHT	PF05729.7	gi|146303417|ref|YP_001190733.1|	-	4.3e-07	29.7	0.3	0.14	11.7	0.1	4.0	2	2	2	4	4	4	2	NACHT	domain
Mg_chelatase	PF01078.16	gi|146303417|ref|YP_001190733.1|	-	5.2e-07	29.0	2.2	0.0021	17.2	0.1	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.6	gi|146303417|ref|YP_001190733.1|	-	1.1e-06	28.2	0.1	0.0099	15.4	0.0	3.1	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|146303417|ref|YP_001190733.1|	-	1.2e-06	27.7	0.1	0.0054	15.8	0.0	3.0	3	0	0	3	3	3	2	Zeta	toxin
AAA_28	PF13521.1	gi|146303417|ref|YP_001190733.1|	-	1.3e-06	28.4	0.0	0.11	12.4	0.0	3.1	4	0	0	4	4	2	2	AAA	domain
Arch_ATPase	PF01637.13	gi|146303417|ref|YP_001190733.1|	-	2.8e-06	27.2	3.7	0.14	11.8	0.0	4.9	2	2	1	4	4	4	2	Archaeal	ATPase
AFG1_ATPase	PF03969.11	gi|146303417|ref|YP_001190733.1|	-	6.9e-06	25.0	0.3	0.016	14.0	0.0	2.9	2	2	1	3	3	3	2	AFG1-like	ATPase
Rad17	PF03215.10	gi|146303417|ref|YP_001190733.1|	-	6.9e-06	25.0	0.1	0.045	12.4	0.0	2.7	2	1	1	3	3	3	2	Rad17	cell	cycle	checkpoint	protein
TIP49	PF06068.8	gi|146303417|ref|YP_001190733.1|	-	1.9e-05	23.5	0.0	0.063	11.9	0.0	2.4	2	0	0	2	2	2	2	TIP49	C-terminus
ABC_tran	PF00005.22	gi|146303417|ref|YP_001190733.1|	-	3.1e-05	24.3	0.1	0.11	12.7	0.0	2.8	2	1	0	2	2	2	2	ABC	transporter
AAA_24	PF13479.1	gi|146303417|ref|YP_001190733.1|	-	3.5e-05	23.5	11.7	0.0027	17.3	0.3	4.7	5	0	0	5	5	5	1	AAA	domain
Vps4_C	PF09336.5	gi|146303417|ref|YP_001190733.1|	-	5.2e-05	23.0	1.2	0.015	15.2	0.0	3.1	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
AAA_19	PF13245.1	gi|146303417|ref|YP_001190733.1|	-	8.1e-05	22.2	0.2	0.52	10.1	0.0	2.7	2	0	0	2	2	2	2	Part	of	AAA	domain
Bac_DnaA	PF00308.13	gi|146303417|ref|YP_001190733.1|	-	9.7e-05	22.1	0.0	0.32	10.6	0.0	3.0	2	2	0	2	2	2	2	Bacterial	dnaA	protein
UPF0079	PF02367.12	gi|146303417|ref|YP_001190733.1|	-	0.00023	20.7	0.1	0.26	10.9	0.0	2.7	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
Guanylate_kin	PF00625.16	gi|146303417|ref|YP_001190733.1|	-	0.00044	19.7	0.1	0.55	9.6	0.0	3.9	3	2	1	4	4	3	1	Guanylate	kinase
Sigma54_activat	PF00158.21	gi|146303417|ref|YP_001190733.1|	-	0.00057	19.4	0.0	1.5	8.2	0.0	3.0	2	1	0	2	2	2	2	Sigma-54	interaction	domain
Sigma54_activ_2	PF14532.1	gi|146303417|ref|YP_001190733.1|	-	0.0012	18.8	0.0	2.3	8.2	0.0	2.7	2	0	0	2	2	2	1	Sigma-54	interaction	domain
MMR_HSR1	PF01926.18	gi|146303417|ref|YP_001190733.1|	-	0.0015	18.5	0.1	0.55	10.2	0.0	3.5	3	1	0	3	3	3	1	50S	ribosome-binding	GTPase
AAA_10	PF12846.2	gi|146303417|ref|YP_001190733.1|	-	0.0021	17.5	1.7	4.7	6.5	0.0	3.7	3	1	1	4	4	3	0	AAA-like	domain
ATP-synt_ab	PF00006.20	gi|146303417|ref|YP_001190733.1|	-	0.0025	17.3	0.0	2.2	7.7	0.0	2.4	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
AAA_30	PF13604.1	gi|146303417|ref|YP_001190733.1|	-	0.0026	17.3	0.1	1.7	8.1	0.0	2.7	2	0	0	2	2	2	1	AAA	domain
Parvo_NS1	PF01057.12	gi|146303417|ref|YP_001190733.1|	-	0.0028	16.5	0.0	0.25	10.1	0.0	2.5	2	0	0	2	2	2	1	Parvovirus	non-structural	protein	NS1
SKI	PF01202.17	gi|146303417|ref|YP_001190733.1|	-	0.003	17.4	0.0	0.48	10.2	0.0	3.0	2	0	0	2	2	2	1	Shikimate	kinase
KTI12	PF08433.5	gi|146303417|ref|YP_001190733.1|	-	0.0032	16.7	1.9	0.19	10.9	0.0	3.4	4	1	0	4	4	4	1	Chromatin	associated	protein	KTI12
KaiC	PF06745.8	gi|146303417|ref|YP_001190733.1|	-	0.0038	16.3	0.4	2.4	7.1	0.0	3.1	3	0	0	3	3	3	1	KaiC
ResIII	PF04851.10	gi|146303417|ref|YP_001190733.1|	-	0.0055	16.5	1.7	2.2	8.0	0.0	3.4	2	2	1	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
PPV_E1_C	PF00519.12	gi|146303417|ref|YP_001190733.1|	-	0.0059	15.2	0.0	0.31	9.6	0.0	2.1	2	0	0	2	2	2	1	Papillomavirus	helicase
SRPRB	PF09439.5	gi|146303417|ref|YP_001190733.1|	-	0.0061	15.7	0.2	5.8	6.0	0.0	3.9	4	0	0	4	4	4	0	Signal	recognition	particle	receptor	beta	subunit
DUF258	PF03193.11	gi|146303417|ref|YP_001190733.1|	-	0.0066	15.6	0.0	1.8	7.7	0.0	2.7	3	0	0	3	3	2	1	Protein	of	unknown	function,	DUF258
Viral_helicase1	PF01443.13	gi|146303417|ref|YP_001190733.1|	-	0.0089	15.5	0.0	0.96	8.9	0.0	2.5	2	0	0	2	2	2	1	Viral	(Superfamily	1)	RNA	helicase
KAP_NTPase	PF07693.9	gi|146303417|ref|YP_001190733.1|	-	0.011	14.7	0.2	1.1	8.1	0.0	3.2	2	1	2	4	4	4	0	KAP	family	P-loop	domain
ScpA_ScpB	PF02616.9	gi|146303417|ref|YP_001190733.1|	-	0.013	15.1	2.4	0.042	13.4	1.7	1.8	1	0	0	1	1	1	0	ScpA/B	protein
PhoH	PF02562.11	gi|146303417|ref|YP_001190733.1|	-	0.016	14.4	0.2	7.7	5.6	0.1	3.0	2	1	0	2	2	2	0	PhoH-like	protein
NB-ARC	PF00931.17	gi|146303417|ref|YP_001190733.1|	-	0.021	13.6	0.1	1.2	7.9	0.0	2.5	2	0	0	2	2	2	0	NB-ARC	domain
NTPase_1	PF03266.10	gi|146303417|ref|YP_001190733.1|	-	0.024	14.3	0.0	1.4	8.6	0.0	2.9	2	0	0	2	2	2	0	NTPase
Glutaredoxin	PF00462.19	gi|146303417|ref|YP_001190733.1|	-	0.039	13.9	0.0	0.49	10.4	0.0	2.8	3	0	0	3	3	2	0	Glutaredoxin
PduV-EutP	PF10662.4	gi|146303417|ref|YP_001190733.1|	-	0.069	12.6	0.0	1.9	7.9	0.0	2.5	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
DUF1049	PF06305.6	gi|146303417|ref|YP_001190733.1|	-	0.11	12.0	0.0	0.24	10.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1049)
AAA_23	PF13476.1	gi|146303417|ref|YP_001190733.1|	-	2.1	8.6	11.3	53	4.0	0.0	4.2	3	1	1	4	4	4	0	AAA	domain
DAO	PF01266.19	gi|146303418|ref|YP_001190734.1|	-	2.5e-17	62.8	2.8	2e-15	56.5	1.9	2.6	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.19	gi|146303418|ref|YP_001190734.1|	-	1.8e-12	47.1	0.7	2.3e-09	36.8	0.0	2.4	2	1	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303418|ref|YP_001190734.1|	-	3.1e-10	39.9	0.8	5.5e-10	39.1	0.1	1.8	2	0	0	2	2	1	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|146303418|ref|YP_001190734.1|	-	8.5e-08	31.5	1.7	3.2e-07	29.6	0.2	2.2	2	1	0	2	2	2	1	Thi4	family
FAD_binding_2	PF00890.19	gi|146303418|ref|YP_001190734.1|	-	1.2e-06	27.7	1.6	0.002	17.0	0.6	2.7	3	0	0	3	3	3	2	FAD	binding	domain
Pyr_redox	PF00070.22	gi|146303418|ref|YP_001190734.1|	-	1.8e-06	28.2	1.3	0.0048	17.2	0.3	2.7	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303418|ref|YP_001190734.1|	-	6e-06	25.5	0.2	0.00023	20.3	0.1	2.1	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146303418|ref|YP_001190734.1|	-	1.1e-05	25.3	0.0	5e-05	23.2	0.0	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303418|ref|YP_001190734.1|	-	5.2e-05	21.8	0.8	0.0043	15.5	0.3	2.2	2	0	0	2	2	2	1	HI0933-like	protein
Trp_halogenase	PF04820.9	gi|146303418|ref|YP_001190734.1|	-	6.5e-05	21.7	2.2	0.12	10.9	0.3	2.2	2	0	0	2	2	2	2	Tryptophan	halogenase
FAD_oxidored	PF12831.2	gi|146303418|ref|YP_001190734.1|	-	7.2e-05	22.0	0.7	0.00036	19.7	0.2	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|146303418|ref|YP_001190734.1|	-	0.00052	18.9	1.4	0.06	12.1	0.4	2.2	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.1	gi|146303418|ref|YP_001190734.1|	-	0.0037	17.3	0.2	0.025	14.6	0.3	2.0	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GDI	PF00996.13	gi|146303418|ref|YP_001190734.1|	-	0.067	11.4	0.1	4.7	5.4	0.0	2.1	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
UDPG_MGDP_dh_N	PF03721.9	gi|146303418|ref|YP_001190734.1|	-	0.096	12.0	0.1	0.17	11.2	0.1	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
XdhC_C	PF13478.1	gi|146303418|ref|YP_001190734.1|	-	0.1	12.8	0.0	8.2	6.7	0.0	2.4	2	0	0	2	2	2	0	XdhC	Rossmann	domain
NAD_binding_9	PF13454.1	gi|146303418|ref|YP_001190734.1|	-	0.12	12.1	0.0	0.24	11.1	0.0	1.6	1	0	0	1	1	1	0	FAD-NAD(P)-binding
Phosphodiest	PF01663.17	gi|146303419|ref|YP_001190735.1|	-	1.6e-17	63.8	0.2	5.6e-16	58.8	0.1	2.5	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|146303419|ref|YP_001190735.1|	-	1.1e-05	25.2	0.0	0.14	11.7	0.0	2.3	2	0	0	2	2	2	2	PglZ	domain
Metalloenzyme	PF01676.13	gi|146303419|ref|YP_001190735.1|	-	0.002	17.5	0.0	0.087	12.1	0.0	2.2	2	0	0	2	2	2	2	Metalloenzyme	superfamily
Pribosyltran	PF00156.22	gi|146303420|ref|YP_001190736.1|	-	9e-19	67.4	0.1	1.2e-18	67.0	0.1	1.1	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
UPRTase	PF14681.1	gi|146303420|ref|YP_001190736.1|	-	0.0071	15.5	0.0	0.0085	15.3	0.0	1.1	1	0	0	1	1	1	1	Uracil	phosphoribosyltransferase
MM_CoA_mutase	PF01642.17	gi|146303421|ref|YP_001190737.1|	-	1.4e-189	630.5	0.0	1.6e-189	630.3	0.0	1.0	1	0	0	1	1	1	1	Methylmalonyl-CoA	mutase
Glyoxalase_4	PF13669.1	gi|146303422|ref|YP_001190738.1|	-	8.5e-22	77.2	0.0	9.9e-22	77.0	0.0	1.0	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase	PF00903.20	gi|146303422|ref|YP_001190738.1|	-	1.1e-11	44.7	0.0	1.3e-11	44.5	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|146303422|ref|YP_001190738.1|	-	2.6e-09	37.2	0.0	3.2e-09	36.9	0.0	1.2	1	0	0	1	1	1	1	Glyoxalase-like	domain
Glyoxalase_2	PF12681.2	gi|146303422|ref|YP_001190738.1|	-	1.8e-06	28.5	0.0	2.1e-06	28.3	0.0	1.1	1	0	0	1	1	1	1	Glyoxalase-like	domain
HSP20	PF00011.16	gi|146303423|ref|YP_001190739.1|	-	2.7e-12	46.4	4.7	3.9e-11	42.6	3.3	2.1	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
CS	PF04969.11	gi|146303423|ref|YP_001190739.1|	-	3.4e-06	27.5	1.3	5.7e-06	26.7	0.9	1.3	1	0	0	1	1	1	1	CS	domain
PIH1	PF08190.7	gi|146303423|ref|YP_001190739.1|	-	0.0007	19.1	0.2	0.00086	18.8	0.2	1.1	1	0	0	1	1	1	1	pre-RNA	processing	PIH1/Nop17
PBP5_C	PF07943.8	gi|146303423|ref|YP_001190739.1|	-	0.7	9.9	7.3	1.5	8.9	5.0	1.5	1	0	0	1	1	1	0	Penicillin-binding	protein	5,	C-terminal	domain
zf-ZPR1	PF03367.8	gi|146303424|ref|YP_001190740.1|	-	1.5e-21	76.2	0.0	2.9e-20	72.0	0.0	2.0	1	1	0	1	1	1	1	ZPR1	zinc-finger	domain
zf-tcix	PF14952.1	gi|146303424|ref|YP_001190740.1|	-	0.091	12.1	0.4	0.091	12.1	0.3	2.1	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
TF_Zn_Ribbon	PF08271.7	gi|146303424|ref|YP_001190740.1|	-	0.094	12.0	1.9	0.29	10.4	1.1	2.0	1	1	1	2	2	2	0	TFIIB	zinc-binding
Lar_restr_allev	PF14354.1	gi|146303424|ref|YP_001190740.1|	-	0.12	12.7	0.2	0.24	11.7	0.2	1.5	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
Rubredoxin	PF00301.15	gi|146303424|ref|YP_001190740.1|	-	0.13	12.2	4.4	1.9	8.4	0.7	2.6	2	0	0	2	2	2	0	Rubredoxin
GTP_EFTU	PF00009.22	gi|146303425|ref|YP_001190741.1|	-	2.5e-25	89.0	0.0	7.3e-25	87.4	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.12	gi|146303425|ref|YP_001190741.1|	-	1.3e-14	54.1	0.0	3.1e-14	52.9	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.20	gi|146303425|ref|YP_001190741.1|	-	3.9e-08	33.2	0.7	2.3e-06	27.6	0.1	2.9	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
PduV-EutP	PF10662.4	gi|146303425|ref|YP_001190741.1|	-	0.00013	21.4	1.9	0.39	10.2	0.0	3.9	3	1	0	4	4	4	2	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|146303425|ref|YP_001190741.1|	-	0.00073	19.4	0.1	0.0021	18.0	0.0	1.8	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
COXG	PF06240.8	gi|146303426|ref|YP_001190742.1|	-	5.2e-12	45.6	0.0	6.8e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
Proteasome_A_N	PF10584.4	gi|146303426|ref|YP_001190742.1|	-	0.07	12.4	2.6	0.072	12.4	0.0	2.2	3	0	0	3	3	3	0	Proteasome	subunit	A	N-terminal	signature
COXG	PF06240.8	gi|146303427|ref|YP_001190743.1|	-	1.3e-39	135.0	0.4	1.5e-39	134.8	0.3	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DUF3211	PF11485.3	gi|146303427|ref|YP_001190743.1|	-	0.00011	22.3	0.0	0.00019	21.4	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
Polyketide_cyc2	PF10604.4	gi|146303427|ref|YP_001190743.1|	-	0.00033	20.8	0.0	0.00037	20.6	0.0	1.0	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
UQ_con	PF00179.21	gi|146303427|ref|YP_001190743.1|	-	0.11	11.8	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Ubiquitin-conjugating	enzyme
MoaE	PF02391.12	gi|146303428|ref|YP_001190744.1|	-	1.9e-19	69.6	0.1	2.8e-19	69.0	0.1	1.2	1	0	0	1	1	1	1	MoaE	protein
ThiS	PF02597.15	gi|146303428|ref|YP_001190744.1|	-	1.1e-10	41.7	0.0	2.7e-10	40.5	0.0	1.7	1	0	0	1	1	1	1	ThiS	family
T_Ag_DNA_bind	PF02217.11	gi|146303428|ref|YP_001190744.1|	-	0.11	12.8	0.0	0.65	10.4	0.0	2.0	2	0	0	2	2	2	0	Origin	of	replication	binding	protein
Phos_pyr_kin	PF08543.7	gi|146303429|ref|YP_001190745.1|	-	8.2e-76	254.4	0.1	1.3e-75	253.7	0.1	1.3	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
Aldolase_2	PF10120.4	gi|146303429|ref|YP_001190745.1|	-	4.9e-56	188.7	0.0	8.9e-56	187.9	0.0	1.5	1	0	0	1	1	1	1	Putative	aldolase
PfkB	PF00294.19	gi|146303429|ref|YP_001190745.1|	-	4e-06	26.1	0.0	6.1e-06	25.5	0.0	1.3	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Carb_kinase	PF01256.12	gi|146303429|ref|YP_001190745.1|	-	2.8e-05	23.5	0.1	4.2e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Carbohydrate	kinase
Toprim_4	PF13662.1	gi|146303429|ref|YP_001190745.1|	-	0.028	14.4	0.0	0.69	9.9	0.0	2.3	2	0	0	2	2	2	0	Toprim	domain
HD_3	PF13023.1	gi|146303430|ref|YP_001190746.1|	-	6.4e-15	55.2	0.0	2.7e-14	53.2	0.0	1.8	1	1	0	1	1	1	1	HD	domain
HD	PF01966.17	gi|146303430|ref|YP_001190746.1|	-	3.9e-06	26.8	0.2	6e-06	26.2	0.1	1.3	1	1	0	1	1	1	1	HD	domain
HDOD	PF08668.7	gi|146303430|ref|YP_001190746.1|	-	0.00011	21.5	0.0	0.00019	20.7	0.0	1.3	1	0	0	1	1	1	1	HDOD	domain
HD_2	PF12917.2	gi|146303430|ref|YP_001190746.1|	-	0.00088	19.1	0.2	0.026	14.2	0.1	2.0	1	1	0	1	1	1	1	HD	containing	hydrolase-like	enzyme
Thioesterase	PF00975.15	gi|146303430|ref|YP_001190746.1|	-	0.0062	16.7	0.1	0.14	12.3	0.0	2.1	2	0	0	2	2	2	1	Thioesterase	domain
DUF2802	PF10975.3	gi|146303430|ref|YP_001190746.1|	-	0.022	14.4	0.1	0.16	11.7	0.1	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
DUF433	PF04255.9	gi|146303430|ref|YP_001190746.1|	-	0.078	12.4	0.0	0.16	11.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF433)
Pyrophosphatase	PF00719.14	gi|146303431|ref|YP_001190747.1|	-	8.4e-62	207.2	0.7	9.4e-62	207.0	0.5	1.0	1	0	0	1	1	1	1	Inorganic	pyrophosphatase
Glyco_tranf_2_3	PF13641.1	gi|146303432|ref|YP_001190748.1|	-	1.3e-37	129.8	0.0	1.6e-37	129.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|146303432|ref|YP_001190748.1|	-	1.9e-26	93.0	1.2	1.9e-26	93.0	0.9	1.7	1	1	1	2	2	2	1	Glycosyl	transferase	family	group	2
Glyco_transf_21	PF13506.1	gi|146303432|ref|YP_001190748.1|	-	5.6e-17	61.5	0.1	1.2e-16	60.5	0.0	1.5	2	0	0	2	2	2	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.21	gi|146303432|ref|YP_001190748.1|	-	1.1e-16	60.9	0.0	1.5e-16	60.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_2	PF10111.4	gi|146303432|ref|YP_001190748.1|	-	4.2e-10	39.1	0.0	6.1e-10	38.6	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Cellulose_synt	PF03552.9	gi|146303432|ref|YP_001190748.1|	-	0.011	14.0	0.6	0.011	14.0	0.4	1.4	2	0	0	2	2	2	0	Cellulose	synthase
YwiC	PF14256.1	gi|146303432|ref|YP_001190748.1|	-	0.11	12.5	5.9	0.042	13.9	2.0	1.8	1	1	1	2	2	2	0	YwiC-like	protein
T2SE	PF00437.15	gi|146303433|ref|YP_001190749.1|	-	6.5e-46	156.4	0.0	1.1e-45	155.6	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF87	PF01935.12	gi|146303433|ref|YP_001190749.1|	-	0.011	15.5	0.1	0.038	13.7	0.0	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
MobB	PF03205.9	gi|146303433|ref|YP_001190749.1|	-	0.014	15.0	0.1	0.032	13.9	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
SRP54	PF00448.17	gi|146303433|ref|YP_001190749.1|	-	0.026	13.9	0.0	0.051	13.0	0.0	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_17	PF13207.1	gi|146303433|ref|YP_001190749.1|	-	0.029	15.1	0.5	0.11	13.3	0.3	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_29	PF13555.1	gi|146303433|ref|YP_001190749.1|	-	0.034	13.6	0.2	0.33	10.4	0.0	2.3	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
cobW	PF02492.14	gi|146303433|ref|YP_001190749.1|	-	0.041	13.3	0.1	0.082	12.3	0.0	1.5	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_14	PF13173.1	gi|146303433|ref|YP_001190749.1|	-	0.066	13.1	0.1	0.62	9.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
Viral_helicase1	PF01443.13	gi|146303433|ref|YP_001190749.1|	-	0.078	12.4	0.0	0.14	11.6	0.0	1.4	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_18	PF13238.1	gi|146303433|ref|YP_001190749.1|	-	0.1	12.8	0.2	1.8	8.9	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|146303433|ref|YP_001190749.1|	-	0.16	11.9	0.1	0.87	9.5	0.0	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_30	PF13604.1	gi|146303433|ref|YP_001190749.1|	-	0.18	11.4	0.0	0.38	10.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
T2SF	PF00482.18	gi|146303434|ref|YP_001190750.1|	-	4.4e-13	49.2	4.4	4.1e-09	36.3	0.5	5.2	6	0	0	6	6	6	2	Type	II	secretion	system	(T2SS),	protein	F
TAF	PF02969.12	gi|146303434|ref|YP_001190750.1|	-	0.096	12.6	0.1	0.22	11.5	0.1	1.5	1	0	0	1	1	1	0	TATA	box	binding	protein	associated	factor	(TAF)
BNIP3	PF06553.7	gi|146303434|ref|YP_001190750.1|	-	0.42	9.9	0.8	0.77	9.0	0.5	1.4	1	0	0	1	1	1	0	BNIP3
DUF3883	PF13020.1	gi|146303435|ref|YP_001190751.1|	-	0.0085	15.8	0.0	0.017	14.8	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3883)
Hjc	PF01870.13	gi|146303435|ref|YP_001190751.1|	-	0.049	13.2	0.0	0.087	12.4	0.0	1.4	1	0	0	1	1	1	0	Archaeal	holliday	junction	resolvase	(hjc)
KH_1	PF00013.24	gi|146303436|ref|YP_001190752.1|	-	1.5e-07	30.9	1.5	2.9e-07	30.0	1.0	1.4	1	0	0	1	1	1	1	KH	domain
KH_3	PF13014.1	gi|146303436|ref|YP_001190752.1|	-	0.00031	20.2	1.0	0.00062	19.3	0.7	1.4	1	0	0	1	1	1	1	KH	domain
RIO1	PF01163.17	gi|146303437|ref|YP_001190753.1|	-	1.8e-56	190.5	0.1	2.2e-56	190.2	0.1	1.1	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|146303437|ref|YP_001190753.1|	-	2.4e-06	27.4	0.0	2.7e-05	24.0	0.0	2.1	1	1	0	2	2	2	1	Phosphotransferase	enzyme	family
Kdo	PF06293.9	gi|146303437|ref|YP_001190753.1|	-	0.0014	17.6	0.0	0.013	14.5	0.0	2.1	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
eIF-1a	PF01176.14	gi|146303438|ref|YP_001190754.1|	-	7.9e-26	89.2	0.2	1e-25	88.9	0.1	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
Thiolase_N	PF00108.18	gi|146303439|ref|YP_001190755.1|	-	1.1e-89	299.9	0.1	1.3e-89	299.6	0.0	1.1	1	0	0	1	1	1	1	Thiolase,	N-terminal	domain
Thiolase_C	PF02803.13	gi|146303439|ref|YP_001190755.1|	-	3.1e-34	117.0	0.3	7.5e-34	115.8	0.0	1.8	2	1	0	2	2	2	1	Thiolase,	C-terminal	domain
ketoacyl-synt	PF00109.21	gi|146303439|ref|YP_001190755.1|	-	1.8e-06	27.5	4.6	2.5e-05	23.9	2.4	2.2	1	1	1	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|146303439|ref|YP_001190755.1|	-	0.00082	18.9	1.5	0.021	14.4	0.3	2.3	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Radical_SAM	PF04055.16	gi|146303440|ref|YP_001190756.1|	-	4.4e-25	88.7	0.1	1.6e-24	86.9	0.0	2.0	3	0	0	3	3	3	1	Radical	SAM	superfamily
UPF0004	PF00919.15	gi|146303440|ref|YP_001190756.1|	-	3.4e-21	74.8	0.1	6e-21	74.1	0.0	1.4	1	0	0	1	1	1	1	Uncharacterized	protein	family	UPF0004
TRAM	PF01938.15	gi|146303440|ref|YP_001190756.1|	-	4.3e-10	39.2	0.4	1.1e-09	37.8	0.0	1.9	2	0	0	2	2	2	1	TRAM	domain
eIF-5_eIF-2B	PF01873.12	gi|146303441|ref|YP_001190757.1|	-	2.5e-30	104.7	0.7	2.9e-30	104.5	0.5	1.0	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
DUF2387	PF09526.5	gi|146303441|ref|YP_001190757.1|	-	0.0082	16.0	0.3	0.014	15.2	0.2	1.4	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
Ribosomal_S27e	PF01667.12	gi|146303441|ref|YP_001190757.1|	-	0.067	12.7	0.6	0.13	11.8	0.4	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
Elf1	PF05129.8	gi|146303441|ref|YP_001190757.1|	-	0.097	12.3	0.7	0.2	11.3	0.5	1.5	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Cys_rich_KTR	PF14205.1	gi|146303441|ref|YP_001190757.1|	-	0.14	11.6	6.5	0.62	9.5	0.1	2.9	2	1	1	3	3	3	0	Cysteine-rich	KTR
DUF424	PF04242.8	gi|146303442|ref|YP_001190758.1|	-	4.3e-26	90.7	0.7	4.8e-26	90.6	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF424)
NMD3	PF04981.8	gi|146303443|ref|YP_001190759.1|	-	2.2e-50	171.0	1.9	2.5e-50	170.8	1.3	1.0	1	0	0	1	1	1	1	NMD3	family
TEX33	PF15400.1	gi|146303443|ref|YP_001190759.1|	-	0.02	15.2	0.0	0.038	14.3	0.0	1.4	1	0	0	1	1	1	0	Testis-expressed	sequence	33	protein	family
zf-C4pol	PF14260.1	gi|146303443|ref|YP_001190759.1|	-	0.054	13.5	3.3	2.4	8.2	0.0	2.8	2	1	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
GATA	PF00320.22	gi|146303443|ref|YP_001190759.1|	-	0.18	11.1	1.6	9.1	5.7	0.1	2.7	2	1	0	2	2	2	0	GATA	zinc	finger
DZR	PF12773.2	gi|146303443|ref|YP_001190759.1|	-	0.66	9.8	6.0	1.4	8.8	0.6	2.8	2	1	0	2	2	2	0	Double	zinc	ribbon
RNase_HII	PF01351.13	gi|146303444|ref|YP_001190760.1|	-	9.5e-47	159.2	0.0	1.1e-46	159.0	0.0	1.0	1	0	0	1	1	1	1	Ribonuclease	HII
Hexapep_2	PF14602.1	gi|146303444|ref|YP_001190760.1|	-	0.0077	15.7	0.4	0.015	14.8	0.3	1.4	1	0	0	1	1	1	1	Hexapeptide	repeat	of	succinyl-transferase
TGS	PF02824.16	gi|146303445|ref|YP_001190761.1|	-	1.5e-19	69.5	0.0	2.6e-19	68.8	0.0	1.4	1	0	0	1	1	1	1	TGS	domain
ApbE	PF02424.10	gi|146303445|ref|YP_001190761.1|	-	0.023	13.9	0.0	0.038	13.2	0.0	1.3	1	0	0	1	1	1	0	ApbE	family
Img2	PF05046.9	gi|146303446|ref|YP_001190762.1|	-	0.15	12.3	0.4	0.33	11.2	0.3	1.6	1	1	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DUF1152	PF06626.7	gi|146303447|ref|YP_001190763.1|	-	5.6e-121	403.2	1.5	6.2e-121	403.0	1.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1152)
VWA_2	PF13519.1	gi|146303450|ref|YP_001190766.1|	-	2.9e-08	34.0	0.0	6.4e-08	32.8	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|146303450|ref|YP_001190766.1|	-	1.5e-06	27.9	0.0	3.4e-06	26.8	0.0	1.6	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|146303450|ref|YP_001190766.1|	-	8.3e-06	25.1	0.0	1.8e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
VWA	PF00092.23	gi|146303450|ref|YP_001190766.1|	-	4.8e-05	23.1	0.1	4.8e-05	23.1	0.0	2.0	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
Activator-TraM	PF11657.3	gi|146303450|ref|YP_001190766.1|	-	0.0085	15.5	1.9	0.019	14.4	1.3	1.5	1	0	0	1	1	1	1	Transcriptional	activator	TraM
PP2C_2	PF13672.1	gi|146303450|ref|YP_001190766.1|	-	0.015	14.7	2.1	2.1	7.6	0.0	2.3	2	0	0	2	2	2	0	Protein	phosphatase	2C
SpoVAE	PF14097.1	gi|146303450|ref|YP_001190766.1|	-	0.025	13.9	1.7	4.9	6.5	0.0	2.8	3	0	0	3	3	3	0	Stage	V	sporulation	protein	AE1
LEDGF	PF11467.3	gi|146303450|ref|YP_001190766.1|	-	0.033	13.8	0.5	0.26	10.9	0.5	2.2	2	0	0	2	2	2	0	Lens	epithelium-derived	growth	factor	(LEDGF)
AAA_5	PF07728.9	gi|146303451|ref|YP_001190767.1|	-	4.2e-27	94.5	0.0	9.7e-27	93.3	0.0	1.6	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_16	PF13191.1	gi|146303451|ref|YP_001190767.1|	-	1.7e-07	31.3	0.2	5.5e-07	29.7	0.0	1.9	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|146303451|ref|YP_001190767.1|	-	2.9e-05	24.2	0.5	0.00019	21.5	0.0	2.5	2	2	1	3	3	3	1	AAA	domain
Mg_chelatase	PF01078.16	gi|146303451|ref|YP_001190767.1|	-	0.00013	21.2	0.0	0.00078	18.6	0.0	2.0	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_3	PF07726.6	gi|146303451|ref|YP_001190767.1|	-	0.00018	21.1	0.0	0.0003	20.3	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MCM	PF00493.18	gi|146303451|ref|YP_001190767.1|	-	0.00022	20.1	0.1	0.014	14.2	0.0	2.2	2	0	0	2	2	2	1	MCM2/3/5	family
AAA	PF00004.24	gi|146303451|ref|YP_001190767.1|	-	0.00038	20.6	0.1	0.0017	18.5	0.0	2.1	2	1	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activat	PF00158.21	gi|146303451|ref|YP_001190767.1|	-	0.0041	16.6	0.0	0.014	14.8	0.0	1.8	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|146303451|ref|YP_001190767.1|	-	0.011	16.5	0.2	0.13	13.0	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|146303451|ref|YP_001190767.1|	-	0.055	13.2	0.0	0.12	12.1	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
HGD-D	PF06050.8	gi|146303451|ref|YP_001190767.1|	-	0.097	11.4	0.3	0.21	10.3	0.1	1.6	2	0	0	2	2	2	0	2-hydroxyglutaryl-CoA	dehydratase,	D-component
tRNA_anti-codon	PF01336.20	gi|146303452|ref|YP_001190768.1|	-	1.5e-05	24.7	1.1	2.2e-05	24.1	0.8	1.3	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
GRP	PF07172.6	gi|146303452|ref|YP_001190768.1|	-	0.006	17.0	10.5	0.011	16.1	7.3	1.4	1	0	0	1	1	1	1	Glycine	rich	protein	family
T2SS-T3SS_pil_N	PF13629.1	gi|146303452|ref|YP_001190768.1|	-	0.06	12.8	0.8	1.8	8.1	0.1	2.3	1	1	1	2	2	2	0	Pilus	formation	protein	N	terminal	region
PqqD	PF05402.7	gi|146303453|ref|YP_001190769.1|	-	2.3e-13	49.9	0.9	3.2e-13	49.4	0.6	1.3	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
MoeA_N	PF03453.12	gi|146303454|ref|YP_001190770.1|	-	2.7e-39	134.1	0.0	6.2e-39	132.9	0.0	1.6	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|146303454|ref|YP_001190770.1|	-	2e-31	108.3	0.1	3.2e-31	107.6	0.1	1.3	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
MoeA_C	PF03454.10	gi|146303454|ref|YP_001190770.1|	-	6.3e-11	42.0	0.0	1.9e-10	40.5	0.0	1.8	1	0	0	1	1	1	1	MoeA	C-terminal	region	(domain	IV)
T2SE	PF00437.15	gi|146303454|ref|YP_001190770.1|	-	0.12	11.2	0.1	0.36	9.6	0.0	1.8	1	1	1	2	2	2	0	Type	II/IV	secretion	system	protein
GHMP_kinases_N	PF00288.21	gi|146303455|ref|YP_001190771.1|	-	4.2e-19	68.3	1.5	9.1e-19	67.3	1.0	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|146303455|ref|YP_001190771.1|	-	7.8e-09	35.6	0.2	2.6e-08	33.9	0.0	1.9	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
Cys_Met_Meta_PP	PF01053.15	gi|146303456|ref|YP_001190772.1|	-	1.3e-124	415.4	0.0	1.4e-124	415.2	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
Aminotran_5	PF00266.14	gi|146303456|ref|YP_001190772.1|	-	0.0001	21.2	0.0	0.00021	20.1	0.0	1.5	2	0	0	2	2	2	1	Aminotransferase	class-V
Met_gamma_lyase	PF06838.6	gi|146303456|ref|YP_001190772.1|	-	0.054	11.7	0.2	0.92	7.7	0.0	2.0	2	0	0	2	2	2	0	Methionine	gamma-lyase
CCG	PF02754.11	gi|146303458|ref|YP_001190774.1|	-	1.1e-34	118.3	1.2	5.2e-19	68.0	0.2	2.2	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer2_3	PF13085.1	gi|146303459|ref|YP_001190775.1|	-	4.3e-34	116.6	1.3	7.3e-34	115.9	0.2	1.8	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_8	PF13183.1	gi|146303459|ref|YP_001190775.1|	-	2.9e-11	43.1	3.2	2.9e-11	43.1	2.2	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303459|ref|YP_001190775.1|	-	1.1e-09	38.4	2.8	1.1e-09	38.4	1.9	2.5	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303459|ref|YP_001190775.1|	-	3.6e-08	33.6	4.6	3.6e-08	33.6	3.2	2.4	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303459|ref|YP_001190775.1|	-	2.3e-07	30.4	4.4	2.3e-07	30.4	3.0	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303459|ref|YP_001190775.1|	-	2.7e-06	27.6	12.6	3.5e-05	24.0	4.0	2.9	2	2	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303459|ref|YP_001190775.1|	-	1.1e-05	25.7	1.2	1.1e-05	25.7	0.8	3.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303459|ref|YP_001190775.1|	-	6.2e-05	22.6	16.1	0.00026	20.6	0.9	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146303459|ref|YP_001190775.1|	-	0.0003	20.2	19.6	0.0062	16.0	1.7	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146303459|ref|YP_001190775.1|	-	0.00069	19.3	19.2	0.0031	17.3	0.9	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303459|ref|YP_001190775.1|	-	0.0012	19.4	7.4	0.0012	19.4	5.1	3.1	3	2	1	4	4	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|146303459|ref|YP_001190775.1|	-	0.0036	17.1	10.1	0.064	13.1	0.2	3.0	3	1	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer2	PF00111.22	gi|146303459|ref|YP_001190775.1|	-	0.0063	16.2	0.6	0.0063	16.2	0.4	2.2	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_15	PF13459.1	gi|146303459|ref|YP_001190775.1|	-	0.011	16.3	8.2	0.086	13.4	0.3	3.1	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer2_4	PF13510.1	gi|146303459|ref|YP_001190775.1|	-	0.046	13.5	0.2	0.098	12.4	0.2	1.5	1	0	0	1	1	1	0	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_4	PF12800.2	gi|146303459|ref|YP_001190775.1|	-	0.062	13.6	18.5	0.098	13.0	0.7	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|146303459|ref|YP_001190775.1|	-	0.5	10.8	11.1	0.23	11.8	2.0	2.8	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
FAD_binding_2	PF00890.19	gi|146303460|ref|YP_001190776.1|	-	3.6e-111	371.9	0.4	4.6e-111	371.6	0.3	1.1	1	0	0	1	1	1	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|146303460|ref|YP_001190776.1|	-	4.3e-46	155.9	0.4	7.2e-46	155.2	0.3	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
DAO	PF01266.19	gi|146303460|ref|YP_001190776.1|	-	3.3e-09	36.1	0.7	2.6e-06	26.5	0.3	2.3	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|146303460|ref|YP_001190776.1|	-	1.1e-05	24.6	0.2	0.084	11.9	0.1	3.3	3	0	0	3	3	3	2	Thi4	family
HI0933_like	PF03486.9	gi|146303460|ref|YP_001190776.1|	-	1.1e-05	24.1	1.2	0.00057	18.4	0.1	2.7	3	0	0	3	3	3	1	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|146303460|ref|YP_001190776.1|	-	3.7e-05	23.7	5.5	0.0011	18.8	2.8	3.2	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146303460|ref|YP_001190776.1|	-	0.00022	20.2	1.1	0.0097	14.8	0.7	2.3	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|146303460|ref|YP_001190776.1|	-	0.00062	19.7	0.2	0.0026	17.7	0.1	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|146303460|ref|YP_001190776.1|	-	0.0013	17.8	0.1	0.0023	17.0	0.1	1.3	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146303460|ref|YP_001190776.1|	-	0.11	11.5	0.6	0.55	9.2	0.4	2.0	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|146303460|ref|YP_001190776.1|	-	0.36	11.2	2.3	0.81	10.1	0.7	2.4	2	0	0	2	2	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Hydrolase_6	PF13344.1	gi|146303461|ref|YP_001190777.1|	-	2.3e-22	78.7	0.0	6.1e-22	77.4	0.0	1.7	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146303461|ref|YP_001190777.1|	-	7.8e-18	63.9	0.0	2e-17	62.6	0.0	1.7	2	0	0	2	2	2	1	HAD-hyrolase-like
HAD_2	PF13419.1	gi|146303461|ref|YP_001190777.1|	-	1.7e-05	25.1	0.0	0.01	16.0	0.0	2.3	2	0	0	2	2	2	2	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|146303461|ref|YP_001190777.1|	-	0.00018	21.9	0.2	0.0041	17.5	0.1	2.4	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
PGP_phosphatase	PF09419.5	gi|146303461|ref|YP_001190777.1|	-	0.00058	19.2	0.1	0.016	14.5	0.0	2.3	2	0	0	2	2	2	1	Mitochondrial	PGP	phosphatase
Hydrolase_3	PF08282.7	gi|146303461|ref|YP_001190777.1|	-	0.14	11.7	0.1	0.57	9.7	0.0	1.9	2	0	0	2	2	2	0	haloacid	dehalogenase-like	hydrolase
DUF2070	PF09843.4	gi|146303463|ref|YP_001190779.1|	-	5.2e-38	130.3	0.0	7.3e-38	129.8	0.0	1.2	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
DUF3902	PF13042.1	gi|146303463|ref|YP_001190779.1|	-	0.026	13.8	0.6	0.026	13.8	0.4	3.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3902)
DAO	PF01266.19	gi|146303464|ref|YP_001190780.1|	-	5.3e-13	48.6	0.0	7.6e-08	31.6	0.0	2.3	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|146303464|ref|YP_001190780.1|	-	4.8e-12	45.4	0.0	2e-05	23.6	0.0	2.1	2	0	0	2	2	2	2	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|146303464|ref|YP_001190780.1|	-	3.4e-10	39.5	0.0	1.4e-09	37.5	0.0	1.8	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146303464|ref|YP_001190780.1|	-	3.3e-09	36.9	0.0	6.4e-09	35.9	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|146303464|ref|YP_001190780.1|	-	1.1e-08	34.6	0.1	6.4e-08	32.0	0.1	2.0	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|146303464|ref|YP_001190780.1|	-	1.9e-08	33.6	0.0	3.4e-07	29.4	0.0	2.1	2	0	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|146303464|ref|YP_001190780.1|	-	1.2e-06	28.3	0.0	3.4e-06	26.9	0.0	1.8	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.9	gi|146303464|ref|YP_001190780.1|	-	1.5e-06	27.1	0.0	0.0044	15.7	0.0	2.1	2	0	0	2	2	2	2	Tryptophan	halogenase
Thi4	PF01946.12	gi|146303464|ref|YP_001190780.1|	-	3.7e-05	22.9	0.0	0.00034	19.7	0.0	2.2	1	1	0	1	1	1	1	Thi4	family
Lycopene_cycl	PF05834.7	gi|146303464|ref|YP_001190780.1|	-	6.4e-05	22.0	0.0	0.00017	20.6	0.0	1.7	1	1	0	1	1	1	1	Lycopene	cyclase	protein
Pyr_redox	PF00070.22	gi|146303464|ref|YP_001190780.1|	-	0.00062	20.1	0.0	0.003	17.9	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303464|ref|YP_001190780.1|	-	0.0011	17.5	0.0	0.0017	16.8	0.0	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|146303464|ref|YP_001190780.1|	-	0.0052	16.8	0.1	0.014	15.5	0.1	1.7	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Shikimate_DH	PF01488.15	gi|146303464|ref|YP_001190780.1|	-	0.066	13.3	0.1	0.19	11.8	0.0	1.7	1	0	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
3HCDH_N	PF02737.13	gi|146303464|ref|YP_001190780.1|	-	0.083	12.5	0.0	0.18	11.4	0.0	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
GDI	PF00996.13	gi|146303464|ref|YP_001190780.1|	-	0.088	11.1	0.0	0.31	9.3	0.0	1.8	2	0	0	2	2	2	0	GDP	dissociation	inhibitor
NAD_binding_9	PF13454.1	gi|146303464|ref|YP_001190780.1|	-	0.089	12.5	0.0	0.21	11.3	0.0	1.6	1	0	0	1	1	1	0	FAD-NAD(P)-binding
NAD_binding_7	PF13241.1	gi|146303464|ref|YP_001190780.1|	-	0.14	12.4	0.0	0.38	11.0	0.0	1.9	1	1	0	1	1	1	0	Putative	NAD(P)-binding
Metallophos_2	PF12850.2	gi|146303467|ref|YP_001190783.1|	-	1.2e-10	41.4	0.0	1.4e-10	41.2	0.0	1.0	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF4445	PF14574.1	gi|146303467|ref|YP_001190783.1|	-	0.064	11.4	0.0	0.072	11.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4445)
Asparaginase_2	PF01112.13	gi|146303468|ref|YP_001190784.1|	-	3.5e-56	190.2	2.4	5.5e-36	123.8	0.2	2.0	1	1	1	2	2	2	2	Asparaginase
UBA	PF00627.26	gi|146303468|ref|YP_001190784.1|	-	0.018	14.8	0.4	0.69	9.8	0.0	2.6	2	0	0	2	2	2	0	UBA/TS-N	domain
Transgly_assoc	PF04226.8	gi|146303469|ref|YP_001190785.1|	-	0.55	10.3	5.6	1.5	8.9	0.4	2.6	2	0	0	2	2	2	0	Transglycosylase	associated	protein
Pyr_redox_2	PF07992.9	gi|146303470|ref|YP_001190786.1|	-	1.9e-09	37.7	0.0	3.4e-09	36.8	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303470|ref|YP_001190786.1|	-	6.1e-05	22.9	0.1	0.00016	21.6	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|146303470|ref|YP_001190786.1|	-	0.00036	19.5	0.5	0.018	13.9	0.1	2.3	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
HI0933_like	PF03486.9	gi|146303470|ref|YP_001190786.1|	-	0.0025	16.3	0.2	0.038	12.4	0.1	2.1	2	0	0	2	2	2	1	HI0933-like	protein
Pyr_redox	PF00070.22	gi|146303470|ref|YP_001190786.1|	-	0.0027	18.0	0.4	0.011	16.1	0.1	2.1	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303470|ref|YP_001190786.1|	-	0.0069	16.4	0.3	0.041	13.9	0.2	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303470|ref|YP_001190786.1|	-	0.01	14.9	0.2	0.014	14.4	0.1	1.2	1	0	0	1	1	1	0	FAD	binding	domain
GIDA	PF01134.17	gi|146303470|ref|YP_001190786.1|	-	0.02	13.7	0.1	0.54	9.0	0.0	2.1	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.1	gi|146303470|ref|YP_001190786.1|	-	0.026	14.2	0.1	6.8	6.4	0.0	2.4	2	0	0	2	2	2	0	FAD-NAD(P)-binding
HTH_AsnC-type	PF13404.1	gi|146303471|ref|YP_001190787.1|	-	4e-17	61.4	0.6	7.3e-17	60.6	0.4	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|146303471|ref|YP_001190787.1|	-	9.6e-16	57.2	0.3	1.4e-15	56.7	0.2	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|146303471|ref|YP_001190787.1|	-	1.6e-15	56.2	0.3	1.6e-15	56.2	0.2	2.2	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|146303471|ref|YP_001190787.1|	-	3.4e-06	26.6	0.1	1.3e-05	24.7	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|146303471|ref|YP_001190787.1|	-	7.4e-06	25.5	0.1	2.8e-05	23.6	0.1	2.0	1	0	0	1	1	1	1	HTH	domain
HTH_27	PF13463.1	gi|146303471|ref|YP_001190787.1|	-	1.3e-05	25.4	1.1	0.00034	20.8	0.0	2.8	2	1	1	3	3	3	1	Winged	helix	DNA-binding	domain
HTH_IclR	PF09339.5	gi|146303471|ref|YP_001190787.1|	-	0.00019	20.9	0.0	0.00061	19.3	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303471|ref|YP_001190787.1|	-	0.00074	19.2	0.0	0.0026	17.5	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|146303471|ref|YP_001190787.1|	-	0.0011	18.6	0.1	0.0045	16.6	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|146303471|ref|YP_001190787.1|	-	0.003	17.2	0.1	0.0085	15.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_Tnp_ISL3	PF13542.1	gi|146303471|ref|YP_001190787.1|	-	0.005	15.9	0.1	0.02	14.0	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Mga	PF05043.8	gi|146303471|ref|YP_001190787.1|	-	0.005	17.0	0.1	0.013	15.7	0.0	1.7	1	1	0	2	2	2	1	Mga	helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|146303471|ref|YP_001190787.1|	-	0.0069	16.1	0.0	0.015	14.9	0.0	1.6	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
ACT_4	PF13291.1	gi|146303471|ref|YP_001190787.1|	-	0.013	15.7	0.1	0.1	12.9	0.0	2.2	1	1	1	2	2	2	0	ACT	domain
Sigma70_r4	PF04545.11	gi|146303471|ref|YP_001190787.1|	-	0.018	14.3	0.1	0.26	10.6	0.0	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
PCI	PF01399.22	gi|146303471|ref|YP_001190787.1|	-	0.032	14.5	0.5	0.14	12.4	0.0	2.0	2	1	0	2	2	2	0	PCI	domain
TrmB	PF01978.14	gi|146303471|ref|YP_001190787.1|	-	0.037	13.7	2.3	0.26	11.0	0.0	2.7	1	1	1	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_34	PF13601.1	gi|146303471|ref|YP_001190787.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Phage_rep_O	PF04492.8	gi|146303471|ref|YP_001190787.1|	-	0.11	12.7	0.2	2	8.6	0.1	2.1	1	1	1	2	2	2	0	Bacteriophage	replication	protein	O
LAGLIDADG_1	PF00961.14	gi|146303471|ref|YP_001190787.1|	-	0.14	12.7	0.4	0.26	11.8	0.3	1.6	1	0	0	1	1	1	0	LAGLIDADG	endonuclease
PNP_UDP_1	PF01048.15	gi|146303472|ref|YP_001190788.1|	-	1.5e-44	151.7	0.0	1.7e-44	151.5	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
CedA	PF10729.4	gi|146303472|ref|YP_001190788.1|	-	0.094	12.2	0.0	2.6	7.6	0.0	2.5	2	1	0	2	2	2	0	Cell	division	activator	CedA
polyprenyl_synt	PF00348.12	gi|146303474|ref|YP_001190790.1|	-	6.8e-34	116.8	0.1	9.1e-34	116.4	0.1	1.1	1	0	0	1	1	1	1	Polyprenyl	synthetase
Kinetocho_Slk19	PF12709.2	gi|146303474|ref|YP_001190790.1|	-	0.084	12.9	0.1	0.19	11.8	0.1	1.5	1	0	0	1	1	1	0	Central	kinetochore-associated
RimK	PF08443.6	gi|146303475|ref|YP_001190791.1|	-	1.7e-36	125.5	0.0	2.6e-36	124.8	0.0	1.3	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146303475|ref|YP_001190791.1|	-	9.1e-16	58.1	0.0	1.3e-15	57.5	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|146303475|ref|YP_001190791.1|	-	6.8e-12	44.8	0.0	1.1e-11	44.2	0.0	1.2	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146303475|ref|YP_001190791.1|	-	4e-09	35.6	0.0	2.5e-08	33.0	0.0	1.9	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|146303475|ref|YP_001190791.1|	-	5.4e-09	36.1	0.0	8.8e-09	35.4	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Synapsin_C	PF02750.9	gi|146303475|ref|YP_001190791.1|	-	0.00045	19.3	0.0	0.00063	18.9	0.0	1.2	1	0	0	1	1	1	1	Synapsin,	ATP	binding	domain
ATPgrasp_YheCD	PF14398.1	gi|146303475|ref|YP_001190791.1|	-	0.0019	17.0	0.0	0.15	10.7	0.0	2.3	2	0	0	2	2	2	2	YheC/D	like	ATP-grasp
DUF4343	PF14243.1	gi|146303475|ref|YP_001190791.1|	-	0.063	13.1	0.1	0.16	11.8	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4343)
RIO1	PF01163.17	gi|146303475|ref|YP_001190791.1|	-	0.12	11.6	0.0	0.22	10.8	0.0	1.3	1	0	0	1	1	1	0	RIO1	family
TP_methylase	PF00590.15	gi|146303476|ref|YP_001190792.1|	-	2.3e-27	96.0	0.0	2.7e-27	95.8	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
TP_methylase	PF00590.15	gi|146303477|ref|YP_001190793.1|	-	4.9e-46	157.0	0.0	5.8e-46	156.8	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Radical_SAM	PF04055.16	gi|146303477|ref|YP_001190793.1|	-	0.00028	21.1	0.0	0.00042	20.5	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
MULE	PF10551.4	gi|146303477|ref|YP_001190793.1|	-	0.023	14.8	0.0	0.043	13.9	0.0	1.4	1	0	0	1	1	1	0	MULE	transposase	domain
PGM_PMM_I	PF02878.11	gi|146303477|ref|YP_001190793.1|	-	0.1	12.0	0.0	0.15	11.5	0.0	1.2	1	0	0	1	1	1	0	Phosphoglucomutase/phosphomannomutase,	alpha/beta/alpha	domain	I
Band_7	PF01145.20	gi|146303478|ref|YP_001190794.1|	-	2.3e-37	128.6	1.7	3.2e-37	128.1	1.2	1.2	1	0	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|146303478|ref|YP_001190794.1|	-	0.011	15.2	0.1	0.04	13.4	0.2	1.8	2	0	0	2	2	2	0	SPFH	domain-Band	7	family
ComK	PF06338.6	gi|146303478|ref|YP_001190794.1|	-	0.034	13.5	0.0	0.061	12.7	0.0	1.4	1	0	0	1	1	1	0	ComK	protein
CitX	PF03802.9	gi|146303478|ref|YP_001190794.1|	-	0.098	12.0	0.2	0.14	11.5	0.1	1.2	1	0	0	1	1	1	0	Apo-citrate	lyase	phosphoribosyl-dephospho-CoA	transferase
RBFA	PF02033.13	gi|146303478|ref|YP_001190794.1|	-	0.1	12.6	1.0	0.26	11.3	0.1	2.0	2	0	0	2	2	2	0	Ribosome-binding	factor	A
Thermopsin	PF05317.6	gi|146303479|ref|YP_001190795.1|	-	1.9e-53	181.1	8.8	1.9e-53	181.1	6.1	2.6	2	1	0	2	2	2	1	Thermopsin
DUF1861	PF08950.5	gi|146303479|ref|YP_001190795.1|	-	0.014	14.1	0.0	0.024	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1861)
NfeD	PF01957.13	gi|146303480|ref|YP_001190796.1|	-	7.4e-15	55.3	2.8	1.2e-14	54.6	1.9	1.4	1	1	0	1	1	1	1	NfeD-like	C-terminal,	partner-binding
SAF	PF08666.7	gi|146303480|ref|YP_001190796.1|	-	0.11	12.8	0.7	15	6.0	0.1	2.3	2	0	0	2	2	2	0	SAF	domain
MMPL	PF03176.10	gi|146303480|ref|YP_001190796.1|	-	0.13	10.9	5.3	0.18	10.5	3.7	1.2	1	0	0	1	1	1	0	MMPL	family
TMEM154	PF15102.1	gi|146303480|ref|YP_001190796.1|	-	0.45	10.2	0.1	0.45	10.2	0.1	2.2	2	0	0	2	2	2	0	TMEM154	protein	family
Tenui_PVC2	PF06656.6	gi|146303480|ref|YP_001190796.1|	-	1.4	6.6	5.0	1.6	6.4	3.5	1.1	1	0	0	1	1	1	0	Tenuivirus	PVC2	protein
AIG2	PF06094.7	gi|146303482|ref|YP_001190798.1|	-	1.3e-21	76.9	8.6	1.3e-14	54.4	1.6	2.2	2	0	0	2	2	2	2	AIG2-like	family
AIG2_2	PF13772.1	gi|146303482|ref|YP_001190798.1|	-	9.5e-15	54.4	1.1	5.7e-09	35.9	0.1	2.2	2	0	0	2	2	2	2	AIG2-like	family
Pterin_4a	PF01329.14	gi|146303483|ref|YP_001190799.1|	-	7.6e-28	96.1	0.0	8.2e-28	96.0	0.0	1.0	1	0	0	1	1	1	1	Pterin	4	alpha	carbinolamine	dehydratase
Cdc6_C	PF09079.6	gi|146303484|ref|YP_001190800.1|	-	3.8e-16	58.5	0.1	8.9e-16	57.3	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA	PF00004.24	gi|146303484|ref|YP_001190800.1|	-	3.4e-08	33.7	0.0	9.2e-08	32.3	0.0	1.7	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|146303484|ref|YP_001190800.1|	-	4.1e-08	33.4	0.0	9.8e-08	32.2	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
NB-ARC	PF00931.17	gi|146303484|ref|YP_001190800.1|	-	1.6e-05	23.9	0.1	9e-05	21.4	0.0	1.9	2	0	0	2	2	2	1	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|146303484|ref|YP_001190800.1|	-	0.015	15.0	0.6	0.015	15.0	0.4	2.1	2	2	0	2	2	2	0	Archaeal	ATPase
DUF87	PF01935.12	gi|146303484|ref|YP_001190800.1|	-	0.029	14.2	0.0	0.084	12.6	0.0	1.7	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
Sigma54_activat	PF00158.21	gi|146303484|ref|YP_001190800.1|	-	0.044	13.2	0.0	0.37	10.2	0.0	2.4	3	0	0	3	3	3	0	Sigma-54	interaction	domain
Seryl_tRNA_N	PF02403.17	gi|146303485|ref|YP_001190801.1|	-	0.00041	20.3	3.1	0.11	12.5	0.3	2.1	2	0	0	2	2	2	2	Seryl-tRNA	synthetase	N-terminal	domain
Prefoldin_2	PF01920.15	gi|146303485|ref|YP_001190801.1|	-	0.0083	15.8	3.0	1.6	8.5	0.1	2.1	2	0	0	2	2	2	2	Prefoldin	subunit
DUF4140	PF13600.1	gi|146303485|ref|YP_001190801.1|	-	0.016	15.6	5.1	0.25	11.7	0.3	2.1	2	0	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Imm38	PF15599.1	gi|146303485|ref|YP_001190801.1|	-	0.045	13.2	0.1	0.08	12.4	0.1	1.4	1	1	0	1	1	1	0	Immunity	protein	38
DUF4201	PF13870.1	gi|146303485|ref|YP_001190801.1|	-	0.051	13.0	5.6	0.86	9.0	0.8	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4201)
Phage_int_SAM_5	PF13102.1	gi|146303485|ref|YP_001190801.1|	-	0.053	13.5	2.3	0.09	12.7	1.6	1.4	1	0	0	1	1	1	0	Phage	integrase	SAM-like	domain
Toxin_52	PF15605.1	gi|146303485|ref|YP_001190801.1|	-	0.12	12.2	0.9	1.8	8.4	0.0	2.0	2	0	0	2	2	2	0	Putative	toxin	52
Imm29	PF15575.1	gi|146303485|ref|YP_001190801.1|	-	0.15	11.6	0.1	0.16	11.5	0.1	1.1	1	0	0	1	1	1	0	Immunity	protein	29
MORN_2	PF07661.8	gi|146303485|ref|YP_001190801.1|	-	0.16	12.0	2.5	2.8	8.2	0.3	3.0	1	1	0	2	2	2	0	MORN	repeat	variant
DivIC	PF04977.10	gi|146303485|ref|YP_001190801.1|	-	0.16	11.4	7.5	1.4	8.4	0.3	2.1	2	0	0	2	2	2	0	Septum	formation	initiator
XhlA	PF10779.4	gi|146303485|ref|YP_001190801.1|	-	0.31	10.9	4.4	3.2	7.7	0.2	2.1	2	0	0	2	2	2	0	Haemolysin	XhlA
BLOC1_2	PF10046.4	gi|146303485|ref|YP_001190801.1|	-	0.31	11.2	2.0	2.9	8.0	0.1	2.1	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Rootletin	PF15035.1	gi|146303485|ref|YP_001190801.1|	-	0.46	10.4	9.3	0.16	11.9	1.2	2.0	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
FlaC_arch	PF05377.6	gi|146303485|ref|YP_001190801.1|	-	0.46	10.4	3.9	7.9	6.4	0.3	2.3	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF1319	PF07028.6	gi|146303485|ref|YP_001190801.1|	-	0.5	10.5	3.9	8.8	6.5	0.4	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1319)
Vac_Fusion	PF02346.11	gi|146303485|ref|YP_001190801.1|	-	0.82	9.1	4.5	0.85	9.0	0.0	2.2	2	0	0	2	2	2	0	Chordopoxvirus	fusion	protein
TSC22	PF01166.13	gi|146303485|ref|YP_001190801.1|	-	0.83	9.6	6.4	1.9	8.5	0.6	2.2	2	0	0	2	2	2	0	TSC-22/dip/bun	family
DegS	PF05384.6	gi|146303485|ref|YP_001190801.1|	-	0.83	8.8	8.6	0.48	9.6	2.0	2.1	1	1	1	2	2	2	0	Sensor	protein	DegS
Occludin_ELL	PF07303.8	gi|146303485|ref|YP_001190801.1|	-	0.86	10.3	3.8	2.1	9.1	2.6	1.6	1	1	0	1	1	1	0	Occludin	homology	domain
bZIP_1	PF00170.16	gi|146303485|ref|YP_001190801.1|	-	1.3	9.0	9.4	2	8.4	0.7	2.3	2	0	0	2	2	2	0	bZIP	transcription	factor
DUF3375	PF11855.3	gi|146303485|ref|YP_001190801.1|	-	2.5	6.7	6.5	0.28	9.8	0.5	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3375)
DUF972	PF06156.8	gi|146303485|ref|YP_001190801.1|	-	3.8	7.9	5.7	21	5.5	0.3	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
Iso_dh	PF00180.15	gi|146303486|ref|YP_001190802.1|	-	1.3e-105	353.1	0.1	1.6e-105	352.8	0.1	1.1	1	0	0	1	1	1	1	Isocitrate/isopropylmalate	dehydrogenase
Methyltransf_11	PF08241.7	gi|146303487|ref|YP_001190803.1|	-	9e-16	58.1	0.0	1.2e-15	57.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146303487|ref|YP_001190803.1|	-	2.2e-10	40.5	0.0	2.8e-10	40.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303487|ref|YP_001190803.1|	-	7.1e-10	38.6	0.0	1.1e-09	38.0	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303487|ref|YP_001190803.1|	-	9.1e-10	38.8	0.0	1.2e-09	38.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303487|ref|YP_001190803.1|	-	5.4e-09	36.6	0.0	7.6e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146303487|ref|YP_001190803.1|	-	9.6e-09	34.6	0.0	1.2e-08	34.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_29	PF03141.11	gi|146303487|ref|YP_001190803.1|	-	3.1e-07	29.1	0.0	3.6e-07	28.9	0.0	1.0	1	0	0	1	1	1	1	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Methyltransf_26	PF13659.1	gi|146303487|ref|YP_001190803.1|	-	8.6e-07	28.9	0.0	1.2e-06	28.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|146303487|ref|YP_001190803.1|	-	2e-06	27.2	0.0	4.2e-06	26.2	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.7	gi|146303487|ref|YP_001190803.1|	-	5.1e-05	23.6	0.0	7e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|146303487|ref|YP_001190803.1|	-	0.00016	20.9	0.0	0.00016	20.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_8	PF05148.10	gi|146303487|ref|YP_001190803.1|	-	0.00026	20.6	0.0	0.005	16.4	0.0	2.2	1	1	0	1	1	1	1	Hypothetical	methyltransferase
CMAS	PF02353.15	gi|146303487|ref|YP_001190803.1|	-	0.0025	16.9	0.0	0.0034	16.4	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Pro-kuma_activ	PF09286.6	gi|146303488|ref|YP_001190804.1|	-	2.7e-12	46.9	0.5	1.1e-11	44.9	0.1	2.2	2	0	0	2	2	2	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.17	gi|146303488|ref|YP_001190804.1|	-	8.2e-08	31.7	0.5	2e-07	30.4	0.3	1.6	1	0	0	1	1	1	1	Subtilase	family
DUF948	PF06103.6	gi|146303490|ref|YP_001190806.1|	-	0.0006	19.6	6.4	0.04	13.7	1.5	2.9	2	1	1	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF3450	PF11932.3	gi|146303490|ref|YP_001190806.1|	-	0.00092	18.5	4.2	0.00092	18.5	2.9	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF3450)
Nop	PF01798.13	gi|146303490|ref|YP_001190806.1|	-	0.016	14.5	3.1	0.035	13.3	0.0	2.9	2	2	2	4	4	4	0	Putative	snoRNA	binding	domain
Prominin	PF05478.6	gi|146303490|ref|YP_001190806.1|	-	0.083	10.4	5.6	0.12	9.9	3.9	1.1	1	0	0	1	1	1	0	Prominin
Baculo_PEP_C	PF04513.7	gi|146303490|ref|YP_001190806.1|	-	0.38	10.5	2.8	9.5	6.0	0.4	2.7	2	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Apolipoprotein	PF01442.13	gi|146303490|ref|YP_001190806.1|	-	0.5	9.8	15.2	1.7	8.1	0.9	2.4	1	1	0	2	2	2	0	Apolipoprotein	A1/A4/E	domain
DUF1268	PF06896.6	gi|146303490|ref|YP_001190806.1|	-	0.58	10.5	11.5	3.7	7.9	2.2	3.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF1268)
SecA_DEAD	PF07517.9	gi|146303490|ref|YP_001190806.1|	-	0.59	9.3	3.7	2	7.6	0.2	2.2	2	0	0	2	2	2	0	SecA	DEAD-like	domain
Lectin_N	PF03954.9	gi|146303490|ref|YP_001190806.1|	-	0.61	9.4	5.8	9.2	5.6	0.2	2.7	2	1	1	3	3	3	0	Hepatic	lectin,	N-terminal	domain
Tup_N	PF08581.5	gi|146303490|ref|YP_001190806.1|	-	0.65	10.2	11.0	0.97	9.6	0.3	3.3	2	1	1	3	3	3	0	Tup	N-terminal
tRNA-synt_1e	PF01406.14	gi|146303490|ref|YP_001190806.1|	-	0.75	8.8	3.5	0.4	9.7	0.3	1.8	1	1	1	2	2	2	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Sec8_exocyst	PF04048.9	gi|146303490|ref|YP_001190806.1|	-	1	9.0	11.5	1.9	8.1	4.1	3.1	2	1	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
AAA_13	PF13166.1	gi|146303490|ref|YP_001190806.1|	-	1.1	7.6	16.3	1.5	7.1	11.3	1.1	1	0	0	1	1	1	0	AAA	domain
DUF1837	PF08878.6	gi|146303490|ref|YP_001190806.1|	-	1.4	8.4	10.4	0.73	9.3	1.2	2.5	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1837)
Cor1	PF04803.7	gi|146303490|ref|YP_001190806.1|	-	3.2	7.5	12.5	0.51	10.1	4.9	2.3	2	1	1	3	3	3	0	Cor1/Xlr/Xmr	conserved	region
Syntaxin	PF00804.20	gi|146303490|ref|YP_001190806.1|	-	5.6	7.1	13.1	2.4	8.3	2.5	3.1	1	1	1	2	2	2	0	Syntaxin
NPV_P10	PF05531.7	gi|146303490|ref|YP_001190806.1|	-	6	7.2	7.4	2.8	8.2	0.8	3.1	2	1	1	3	3	3	0	Nucleopolyhedrovirus	P10	protein
FliD_N	PF02465.13	gi|146303490|ref|YP_001190806.1|	-	6.3	7.2	7.9	5.3	7.4	1.2	3.1	1	1	1	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
Semialdhyde_dh	PF01118.19	gi|146303492|ref|YP_001190808.1|	-	6.1e-30	104.0	0.0	1.8e-29	102.4	0.0	1.8	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|146303492|ref|YP_001190808.1|	-	2.7e-22	79.4	0.0	3.9e-22	78.9	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
PgaD	PF13994.1	gi|146303493|ref|YP_001190809.1|	-	0.42	10.0	5.5	2.9	7.3	0.2	2.7	2	1	1	3	3	3	0	PgaD-like	protein
ILVD_EDD	PF00920.16	gi|146303494|ref|YP_001190810.1|	-	1.3e-215	716.7	0.0	1.5e-215	716.5	0.0	1.0	1	0	0	1	1	1	1	Dehydratase	family
PMSR	PF01625.16	gi|146303495|ref|YP_001190811.1|	-	3e-63	212.3	0.2	3.6e-63	212.1	0.1	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
CbiA	PF01656.18	gi|146303496|ref|YP_001190812.1|	-	2.7e-05	23.6	0.1	4.8e-05	22.8	0.1	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_26	PF13500.1	gi|146303496|ref|YP_001190812.1|	-	0.0075	15.8	0.1	0.017	14.7	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
MipZ	PF09140.6	gi|146303496|ref|YP_001190812.1|	-	0.066	12.2	0.0	0.1	11.6	0.0	1.2	1	0	0	1	1	1	0	ATPase	MipZ
DUF2075	PF09848.4	gi|146303496|ref|YP_001190812.1|	-	0.3	9.9	0.8	0.32	9.9	0.1	1.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
PadR	PF03551.9	gi|146303498|ref|YP_001190814.1|	-	7.2e-12	44.9	0.3	9.7e-12	44.4	0.2	1.2	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|146303498|ref|YP_001190814.1|	-	0.00095	19.4	0.0	0.0013	18.9	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|146303498|ref|YP_001190814.1|	-	0.022	14.5	1.6	0.087	12.6	0.0	2.3	2	1	1	3	3	3	0	Winged	helix-turn-helix
PaaX	PF07848.7	gi|146303498|ref|YP_001190814.1|	-	0.039	13.9	0.0	0.051	13.5	0.0	1.3	1	0	0	1	1	1	0	PaaX-like	protein
DUF4364	PF14277.1	gi|146303498|ref|YP_001190814.1|	-	0.047	13.3	0.0	0.067	12.8	0.0	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
RQC	PF09382.5	gi|146303498|ref|YP_001190814.1|	-	0.054	13.2	0.0	0.098	12.3	0.0	1.5	1	0	0	1	1	1	0	RQC	domain
FIBP	PF05427.6	gi|146303498|ref|YP_001190814.1|	-	0.069	12.3	0.1	0.069	12.3	0.0	1.1	1	0	0	1	1	1	0	Acidic	fibroblast	growth	factor	binding	(FIBP)
Ribosomal_S19e	PF01090.14	gi|146303498|ref|YP_001190814.1|	-	0.084	12.3	0.0	0.11	11.8	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S19e
NAD_synthase	PF02540.12	gi|146303499|ref|YP_001190815.1|	-	1.4e-74	250.0	0.0	1.6e-74	249.9	0.0	1.0	1	0	0	1	1	1	1	NAD	synthase
tRNA_Me_trans	PF03054.11	gi|146303499|ref|YP_001190815.1|	-	1.1e-05	24.1	0.0	0.0013	17.3	0.0	2.1	2	0	0	2	2	2	2	tRNA	methyl	transferase
Asn_synthase	PF00733.16	gi|146303499|ref|YP_001190815.1|	-	0.00026	20.5	0.0	0.00034	20.1	0.0	1.1	1	0	0	1	1	1	1	Asparagine	synthase
ThiI	PF02568.9	gi|146303499|ref|YP_001190815.1|	-	0.003	17.0	0.0	0.0044	16.4	0.0	1.2	1	0	0	1	1	1	1	Thiamine	biosynthesis	protein	(ThiI)
QueC	PF06508.8	gi|146303499|ref|YP_001190815.1|	-	0.0065	15.7	0.0	0.012	14.8	0.0	1.4	2	0	0	2	2	2	1	Queuosine	biosynthesis	protein	QueC
HTH_5	PF01022.15	gi|146303500|ref|YP_001190816.1|	-	4.8e-10	38.9	0.1	6.7e-10	38.4	0.0	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|146303500|ref|YP_001190816.1|	-	1.1e-09	37.9	0.1	1.4e-09	37.5	0.1	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146303500|ref|YP_001190816.1|	-	1.6e-06	27.7	0.2	2.1e-06	27.3	0.2	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146303500|ref|YP_001190816.1|	-	6.1e-06	25.5	0.1	1.1e-05	24.6	0.1	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_12	PF08461.5	gi|146303500|ref|YP_001190816.1|	-	3.9e-05	23.2	0.3	7.7e-05	22.3	0.2	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
MarR_2	PF12802.2	gi|146303500|ref|YP_001190816.1|	-	4e-05	23.1	0.0	5.5e-05	22.7	0.0	1.1	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|146303500|ref|YP_001190816.1|	-	5.1e-05	22.8	0.1	6.9e-05	22.4	0.1	1.2	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.11	gi|146303500|ref|YP_001190816.1|	-	0.00022	21.2	0.5	0.00027	21.0	0.3	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
MarR	PF01047.17	gi|146303500|ref|YP_001190816.1|	-	0.0003	20.4	0.0	0.00042	19.9	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|146303500|ref|YP_001190816.1|	-	0.0014	18.9	0.1	0.0018	18.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.1	gi|146303500|ref|YP_001190816.1|	-	0.0043	16.8	0.1	0.0055	16.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
Fe_dep_repress	PF01325.14	gi|146303500|ref|YP_001190816.1|	-	0.0045	16.8	0.1	0.012	15.5	0.1	1.8	1	1	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_29	PF13551.1	gi|146303500|ref|YP_001190816.1|	-	0.0069	16.5	0.1	0.011	15.9	0.0	1.4	1	1	0	1	1	1	1	Winged	helix-turn	helix
Rrf2	PF02082.15	gi|146303500|ref|YP_001190816.1|	-	0.016	15.2	0.1	0.02	15.0	0.0	1.2	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_28	PF13518.1	gi|146303500|ref|YP_001190816.1|	-	0.018	15.0	0.1	0.026	14.5	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.16	gi|146303500|ref|YP_001190816.1|	-	0.025	14.0	0.0	0.04	13.3	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
LexA_DNA_bind	PF01726.11	gi|146303500|ref|YP_001190816.1|	-	0.032	13.7	0.0	0.051	13.1	0.0	1.4	1	1	0	1	1	1	0	LexA	DNA	binding	domain
DUF2250	PF10007.4	gi|146303500|ref|YP_001190816.1|	-	0.047	13.6	0.1	0.055	13.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.5	gi|146303500|ref|YP_001190816.1|	-	0.05	13.1	0.1	0.065	12.8	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
PadR	PF03551.9	gi|146303500|ref|YP_001190816.1|	-	0.056	13.2	0.7	0.11	12.2	0.5	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_34	PF13601.1	gi|146303500|ref|YP_001190816.1|	-	0.065	13.2	0.1	0.077	13.0	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|146303500|ref|YP_001190816.1|	-	0.077	12.5	0.0	0.13	11.8	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Ftsk_gamma	PF09397.5	gi|146303500|ref|YP_001190816.1|	-	0.077	12.7	0.0	0.13	12.0	0.0	1.4	1	0	0	1	1	1	0	Ftsk	gamma	domain
DUF4423	PF14394.1	gi|146303500|ref|YP_001190816.1|	-	0.084	12.4	0.0	0.099	12.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
DUF2513	PF10711.4	gi|146303500|ref|YP_001190816.1|	-	0.088	12.9	0.0	0.1	12.6	0.0	1.2	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2513)
Phage_rep_org_N	PF09681.5	gi|146303500|ref|YP_001190816.1|	-	0.11	12.0	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
Clr5	PF14420.1	gi|146303500|ref|YP_001190816.1|	-	0.13	12.1	0.5	0.45	10.4	0.1	2.0	1	1	1	2	2	2	0	Clr5	domain
DUF1495	PF07381.6	gi|146303500|ref|YP_001190816.1|	-	0.15	11.7	0.5	2.6	7.7	0.3	2.0	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
DUF340	PF03956.8	gi|146303501|ref|YP_001190817.1|	-	6.1e-51	172.4	16.4	6.1e-51	172.4	11.3	2.1	2	0	0	2	2	2	1	Membrane	protein	of	unknown	function	(DUF340)
SPW	PF03779.9	gi|146303501|ref|YP_001190817.1|	-	1.1	8.6	8.9	0.16	11.3	1.5	3.1	3	0	0	3	3	3	0	SPW	repeat
Methyltransf_23	PF13489.1	gi|146303502|ref|YP_001190818.1|	-	1.2e-12	47.8	0.0	4.9e-12	45.8	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303502|ref|YP_001190818.1|	-	4.7e-12	46.1	0.0	9.1e-12	45.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303502|ref|YP_001190818.1|	-	3.4e-11	42.9	0.0	4.6e-11	42.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303502|ref|YP_001190818.1|	-	4.7e-11	43.2	0.0	9.4e-11	42.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303502|ref|YP_001190818.1|	-	3.1e-10	40.4	0.0	6e-10	39.4	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303502|ref|YP_001190818.1|	-	1.3e-08	35.2	0.0	2.1e-08	34.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146303502|ref|YP_001190818.1|	-	1.3e-08	34.8	0.0	3.9e-08	33.3	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146303502|ref|YP_001190818.1|	-	5.9e-07	28.8	0.1	1.7e-06	27.3	0.1	1.7	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|146303502|ref|YP_001190818.1|	-	2.3e-05	23.8	0.0	5.2e-05	22.6	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	small	domain
TehB	PF03848.9	gi|146303502|ref|YP_001190818.1|	-	3.5e-05	23.0	0.1	5.7e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
CMAS	PF02353.15	gi|146303502|ref|YP_001190818.1|	-	0.003	16.6	0.0	0.0058	15.7	0.0	1.5	2	0	0	2	2	2	1	Mycolic	acid	cyclopropane	synthetase
NodS	PF05401.6	gi|146303502|ref|YP_001190818.1|	-	0.031	13.6	0.0	0.045	13.1	0.0	1.4	1	0	0	1	1	1	0	Nodulation	protein	S	(NodS)
PCMT	PF01135.14	gi|146303502|ref|YP_001190818.1|	-	0.035	13.6	0.0	0.059	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
PrmA	PF06325.8	gi|146303502|ref|YP_001190818.1|	-	0.096	11.7	0.0	0.18	10.8	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
FmrO	PF07091.6	gi|146303502|ref|YP_001190818.1|	-	0.13	11.2	0.0	0.21	10.5	0.0	1.4	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
MetW	PF07021.7	gi|146303502|ref|YP_001190818.1|	-	0.13	11.6	0.0	0.27	10.5	0.0	1.5	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
UDG	PF03167.14	gi|146303503|ref|YP_001190819.1|	-	1.5e-29	102.4	0.0	1.8e-29	102.1	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
NTPase_1	PF03266.10	gi|146303504|ref|YP_001190820.1|	-	2.6e-41	141.1	0.1	3.1e-41	140.8	0.1	1.1	1	0	0	1	1	1	1	NTPase
Arch_ATPase	PF01637.13	gi|146303504|ref|YP_001190820.1|	-	1.1e-05	25.2	0.1	1.4e-05	24.9	0.0	1.4	1	1	0	1	1	1	1	Archaeal	ATPase
NACHT	PF05729.7	gi|146303504|ref|YP_001190820.1|	-	0.00015	21.4	0.1	0.0004	20.0	0.1	1.9	1	1	0	1	1	1	1	NACHT	domain
KTI12	PF08433.5	gi|146303504|ref|YP_001190820.1|	-	0.00019	20.7	0.0	0.0018	17.5	0.0	2.0	1	1	1	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_19	PF13245.1	gi|146303504|ref|YP_001190820.1|	-	0.00024	20.7	0.0	0.0004	20.0	0.0	1.3	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_22	PF13401.1	gi|146303504|ref|YP_001190820.1|	-	0.00045	20.3	0.1	0.0012	18.9	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|146303504|ref|YP_001190820.1|	-	0.00053	20.3	0.3	0.0012	19.1	0.1	1.6	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|146303504|ref|YP_001190820.1|	-	0.00059	20.0	0.0	0.001	19.3	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|146303504|ref|YP_001190820.1|	-	0.00064	20.5	0.4	0.00084	20.1	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|146303504|ref|YP_001190820.1|	-	0.0019	18.1	0.1	0.0024	17.8	0.0	1.4	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
IstB_IS21	PF01695.12	gi|146303504|ref|YP_001190820.1|	-	0.0022	17.4	0.0	0.92	8.9	0.0	2.1	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_16	PF13191.1	gi|146303504|ref|YP_001190820.1|	-	0.0025	17.8	0.0	0.0031	17.5	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
cobW	PF02492.14	gi|146303504|ref|YP_001190820.1|	-	0.0034	16.8	0.1	0.015	14.7	0.0	1.9	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|146303504|ref|YP_001190820.1|	-	0.0042	16.7	0.2	0.009	15.7	0.0	1.6	2	0	0	2	2	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ArgK	PF03308.11	gi|146303504|ref|YP_001190820.1|	-	0.0042	15.9	0.1	0.0083	14.9	0.0	1.5	1	0	0	1	1	1	1	ArgK	protein
RNA_helicase	PF00910.17	gi|146303504|ref|YP_001190820.1|	-	0.0058	16.7	0.0	0.042	14.0	0.0	2.0	2	0	0	2	2	2	1	RNA	helicase
Pox_A32	PF04665.7	gi|146303504|ref|YP_001190820.1|	-	0.0077	15.5	0.0	0.25	10.6	0.0	2.2	2	0	0	2	2	2	1	Poxvirus	A32	protein
AAA_24	PF13479.1	gi|146303504|ref|YP_001190820.1|	-	0.01	15.4	0.0	0.019	14.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|146303504|ref|YP_001190820.1|	-	0.01	16.2	0.1	0.02	15.3	0.0	1.5	1	1	0	1	1	1	0	Miro-like	protein
Zeta_toxin	PF06414.7	gi|146303504|ref|YP_001190820.1|	-	0.016	14.3	0.0	0.025	13.6	0.0	1.2	1	0	0	1	1	1	0	Zeta	toxin
NB-ARC	PF00931.17	gi|146303504|ref|YP_001190820.1|	-	0.023	13.5	0.0	0.039	12.8	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
DUF258	PF03193.11	gi|146303504|ref|YP_001190820.1|	-	0.029	13.5	0.0	0.045	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ABC_tran	PF00005.22	gi|146303504|ref|YP_001190820.1|	-	0.032	14.5	0.0	0.065	13.5	0.0	1.5	1	0	0	1	1	1	0	ABC	transporter
AAA_14	PF13173.1	gi|146303504|ref|YP_001190820.1|	-	0.033	14.0	0.1	0.07	13.0	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|146303504|ref|YP_001190820.1|	-	0.039	13.9	0.1	0.068	13.1	0.1	1.4	1	0	0	1	1	1	0	AAA	domain
Viral_helicase1	PF01443.13	gi|146303504|ref|YP_001190820.1|	-	0.041	13.4	0.1	0.074	12.5	0.1	1.6	1	1	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
PIF1	PF05970.9	gi|146303504|ref|YP_001190820.1|	-	0.044	12.7	0.1	0.25	10.2	0.1	2.1	1	1	0	1	1	1	0	PIF1-like	helicase
AAA_33	PF13671.1	gi|146303504|ref|YP_001190820.1|	-	0.047	13.5	0.1	0.063	13.1	0.1	1.7	1	1	0	1	1	1	0	AAA	domain
Bac_DnaA	PF00308.13	gi|146303504|ref|YP_001190820.1|	-	0.049	13.2	0.0	5.4	6.5	0.0	2.1	2	0	0	2	2	2	0	Bacterial	dnaA	protein
AAA_10	PF12846.2	gi|146303504|ref|YP_001190820.1|	-	0.067	12.6	0.0	0.085	12.2	0.0	1.2	1	0	0	1	1	1	0	AAA-like	domain
AAA_29	PF13555.1	gi|146303504|ref|YP_001190820.1|	-	0.09	12.3	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_11	PF13086.1	gi|146303504|ref|YP_001190820.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.6	1	1	0	1	1	1	0	AAA	domain
Chlor_dismutase	PF06778.7	gi|146303506|ref|YP_001190822.1|	-	1.4e-51	174.9	0.2	4.4e-51	173.3	0.0	1.7	1	1	1	2	2	2	1	Chlorite	dismutase
2_5_RNA_ligase2	PF13563.1	gi|146303506|ref|YP_001190822.1|	-	0.053	13.2	0.0	0.08	12.6	0.0	1.3	1	0	0	1	1	1	0	2'-5'	RNA	ligase	superfamily
NUDIX	PF00293.23	gi|146303507|ref|YP_001190823.1|	-	4.5e-17	61.9	0.0	5.5e-17	61.6	0.0	1.1	1	0	0	1	1	1	1	NUDIX	domain
SNARE_assoc	PF09335.6	gi|146303508|ref|YP_001190824.1|	-	0.0038	17.4	3.3	0.0038	17.4	2.3	2.0	2	1	0	2	2	2	1	SNARE	associated	Golgi	protein
Pox_A9	PF04835.7	gi|146303508|ref|YP_001190824.1|	-	0.081	12.8	0.3	0.23	11.3	0.1	1.9	2	0	0	2	2	2	0	A9	protein	conserved	region
HIT	PF01230.18	gi|146303509|ref|YP_001190825.1|	-	4.6e-23	81.5	0.0	7.8e-23	80.8	0.0	1.3	1	0	0	1	1	1	1	HIT	domain
DcpS_C	PF11969.3	gi|146303509|ref|YP_001190825.1|	-	8.1e-12	45.4	0.0	1.2e-11	44.8	0.0	1.3	1	0	0	1	1	1	1	Scavenger	mRNA	decapping	enzyme	C-term	binding
FAD_binding_4	PF01565.18	gi|146303510|ref|YP_001190826.1|	-	3.8e-38	130.1	0.0	9e-38	128.8	0.0	1.7	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.1	gi|146303510|ref|YP_001190826.1|	-	2.5e-08	34.1	1.7	5.4e-08	33.0	1.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303510|ref|YP_001190826.1|	-	3.9e-08	32.9	1.8	1.6e-07	30.9	1.5	1.8	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146303510|ref|YP_001190826.1|	-	2.9e-07	30.4	4.9	8.4e-07	28.9	3.4	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303510|ref|YP_001190826.1|	-	4.8e-07	30.1	4.6	0.0017	18.7	0.0	2.7	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303510|ref|YP_001190826.1|	-	1.7e-06	28.2	3.9	4.2e-06	27.0	2.7	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
FAD-oxidase_C	PF02913.14	gi|146303510|ref|YP_001190826.1|	-	4.8e-05	22.8	0.1	0.00021	20.7	0.0	2.1	2	1	1	3	3	3	1	FAD	linked	oxidases,	C-terminal	domain
Fer4_9	PF13187.1	gi|146303510|ref|YP_001190826.1|	-	0.001	19.3	11.1	0.017	15.3	1.8	2.6	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146303510|ref|YP_001190826.1|	-	0.0023	17.7	6.9	0.055	13.3	0.3	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
GlnE	PF03710.10	gi|146303510|ref|YP_001190826.1|	-	0.0071	15.6	0.0	0.015	14.5	0.0	1.5	1	0	0	1	1	1	1	Glutamate-ammonia	ligase	adenylyltransferase
Fer4_6	PF12837.2	gi|146303510|ref|YP_001190826.1|	-	0.013	15.3	3.8	0.013	15.3	2.6	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|146303510|ref|YP_001190826.1|	-	0.015	14.9	2.5	3.7	7.2	0.4	2.4	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4	PF00037.22	gi|146303510|ref|YP_001190826.1|	-	0.02	14.4	17.2	0.081	12.5	3.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146303510|ref|YP_001190826.1|	-	0.032	14.1	13.0	0.033	14.0	1.7	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Semialdhyde_dh	PF01118.19	gi|146303510|ref|YP_001190826.1|	-	0.076	13.3	0.0	0.43	10.8	0.0	2.3	2	0	0	2	2	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
Fer4_16	PF13484.1	gi|146303510|ref|YP_001190826.1|	-	0.18	12.5	10.8	3	8.6	8.0	2.4	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_3	PF12798.2	gi|146303510|ref|YP_001190826.1|	-	6	7.6	19.0	2	9.1	4.0	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Peptidase_M61	PF05299.7	gi|146303511|ref|YP_001190827.1|	-	7.8e-35	119.5	0.4	1.3e-34	118.8	0.3	1.3	1	0	0	1	1	1	1	M61	glycyl	aminopeptidase
Peptidase_MA_2	PF13485.1	gi|146303511|ref|YP_001190827.1|	-	1e-10	41.7	0.2	1.7e-10	40.9	0.2	1.4	1	0	0	1	1	1	1	Peptidase	MA	superfamily
PDZ_2	PF13180.1	gi|146303511|ref|YP_001190827.1|	-	0.001	18.9	3.8	0.0018	18.0	0.3	3.1	3	1	0	3	3	3	1	PDZ	domain
EcoRII-N	PF09217.5	gi|146303511|ref|YP_001190827.1|	-	0.066	12.7	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease	EcoRII,	N-terminal
GRASP55_65	PF04495.9	gi|146303511|ref|YP_001190827.1|	-	0.14	12.1	0.0	0.3	11.0	0.0	1.5	1	0	0	1	1	1	0	GRASP55/65	PDZ-like	domain
AP_endonuc_2	PF01261.19	gi|146303512|ref|YP_001190828.1|	-	2e-20	73.0	0.0	2.5e-20	72.6	0.0	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
UvdE	PF03851.9	gi|146303512|ref|YP_001190828.1|	-	0.0038	16.2	0.0	0.0054	15.7	0.0	1.2	1	0	0	1	1	1	1	UV-endonuclease	UvdE
DeoC	PF01791.4	gi|146303512|ref|YP_001190828.1|	-	0.066	12.4	0.0	0.094	11.9	0.0	1.2	1	0	0	1	1	1	0	DeoC/LacD	family	aldolase
Hydrolase_3	PF08282.7	gi|146303513|ref|YP_001190829.1|	-	1.6e-19	70.4	0.0	1.8e-14	53.9	0.1	2.1	1	1	0	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|146303513|ref|YP_001190829.1|	-	2.1e-06	27.2	0.0	0.0009	18.6	0.0	2.1	2	0	0	2	2	2	2	Sucrose-6F-phosphate	phosphohydrolase
Trehalose_PPase	PF02358.11	gi|146303513|ref|YP_001190829.1|	-	0.011	14.6	0.0	0.97	8.2	0.0	2.1	2	0	0	2	2	2	0	Trehalose-phosphatase
MTS	PF05175.9	gi|146303514|ref|YP_001190830.1|	-	5.4e-13	48.6	0.0	7.2e-13	48.2	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|146303514|ref|YP_001190830.1|	-	1.1e-09	38.3	0.1	1.6e-09	37.8	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303514|ref|YP_001190830.1|	-	9.1e-08	31.8	0.0	1.2e-07	31.4	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303514|ref|YP_001190830.1|	-	2e-07	31.5	0.0	2.4e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303514|ref|YP_001190830.1|	-	4.4e-07	30.1	0.4	6.2e-07	29.7	0.2	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303514|ref|YP_001190830.1|	-	1.2e-05	25.7	0.1	2.5e-05	24.6	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303514|ref|YP_001190830.1|	-	0.00028	21.3	0.1	0.00045	20.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|146303514|ref|YP_001190830.1|	-	0.00053	19.6	0.0	0.00068	19.2	0.0	1.1	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_23	PF13489.1	gi|146303514|ref|YP_001190830.1|	-	0.0044	16.7	0.0	0.0062	16.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.9	gi|146303514|ref|YP_001190830.1|	-	0.0088	15.2	0.0	0.013	14.6	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
FmrO	PF07091.6	gi|146303514|ref|YP_001190830.1|	-	0.009	15.0	0.0	0.013	14.5	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
Ubie_methyltran	PF01209.13	gi|146303514|ref|YP_001190830.1|	-	0.0099	15.0	0.0	0.012	14.7	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
N6_Mtase	PF02384.11	gi|146303514|ref|YP_001190830.1|	-	0.019	14.0	0.0	0.96	8.4	0.0	2.1	2	0	0	2	2	2	0	N-6	DNA	Methylase
PrmA	PF06325.8	gi|146303514|ref|YP_001190830.1|	-	0.022	13.8	0.0	0.029	13.4	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
HAD_2	PF13419.1	gi|146303515|ref|YP_001190831.1|	-	6.9e-23	81.7	0.0	8.2e-23	81.5	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|146303515|ref|YP_001190831.1|	-	1.1e-07	32.5	0.0	1.1e-06	29.2	0.0	2.0	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146303515|ref|YP_001190831.1|	-	1.9e-05	24.2	0.0	0.00011	21.7	0.0	2.2	2	0	0	2	2	2	1	HAD-hyrolase-like
Hydrolase_6	PF13344.1	gi|146303515|ref|YP_001190831.1|	-	0.017	14.9	0.0	0.042	13.7	0.0	1.7	2	0	0	2	2	2	0	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146303515|ref|YP_001190831.1|	-	0.017	15.2	0.0	0.54	10.3	0.0	2.1	1	1	1	2	2	2	0	haloacid	dehalogenase-like	hydrolase
HypA	PF01155.14	gi|146303516|ref|YP_001190832.1|	-	0.001	18.7	0.2	0.0015	18.1	0.1	1.2	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
DUF1451	PF07295.6	gi|146303516|ref|YP_001190832.1|	-	0.0025	17.5	0.3	0.0042	16.8	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1451)
DZR	PF12773.2	gi|146303516|ref|YP_001190832.1|	-	0.0055	16.5	1.9	0.0082	15.9	1.3	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-ISL3	PF14690.1	gi|146303516|ref|YP_001190832.1|	-	0.067	13.2	2.7	1.9	8.5	0.1	2.4	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
PhnA_Zn_Ribbon	PF08274.7	gi|146303516|ref|YP_001190832.1|	-	0.11	12.3	6.1	1.7	8.5	0.3	2.2	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
SprT-like	PF10263.4	gi|146303516|ref|YP_001190832.1|	-	0.11	12.1	0.2	0.12	11.9	0.2	1.1	1	0	0	1	1	1	0	SprT-like	family
zf-ribbon_3	PF13248.1	gi|146303516|ref|YP_001190832.1|	-	0.13	11.5	1.2	3.9	6.7	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146303516|ref|YP_001190832.1|	-	0.15	11.5	3.9	1.7	8.2	2.7	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
DUF35_N	PF12172.3	gi|146303516|ref|YP_001190832.1|	-	0.23	11.3	3.2	8.7	6.3	0.0	2.2	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-RING_3	PF14369.1	gi|146303516|ref|YP_001190832.1|	-	0.33	10.9	2.4	0.63	10.0	1.7	1.5	1	0	0	1	1	1	0	zinc-finger
zf-MYND	PF01753.13	gi|146303516|ref|YP_001190832.1|	-	0.63	9.9	3.4	0.97	9.3	2.4	1.2	1	0	0	1	1	1	0	MYND	finger
DNA_RNApol_7kD	PF03604.8	gi|146303516|ref|YP_001190832.1|	-	0.66	9.4	3.7	1.3	8.5	2.6	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn-ribbon_8	PF09723.5	gi|146303516|ref|YP_001190832.1|	-	0.99	9.4	6.4	3.3	7.7	4.5	1.8	1	1	0	1	1	1	0	Zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146303516|ref|YP_001190832.1|	-	1	8.7	3.2	6.3	6.2	0.2	2.3	2	0	0	2	2	2	0	TFIIB	zinc-binding
DiS_P_DiS	PF06750.8	gi|146303516|ref|YP_001190832.1|	-	1.1	9.1	3.6	21	5.0	2.5	2.1	1	1	0	1	1	1	0	Bacterial	Peptidase	A24	N-terminal	domain
Zn_Tnp_IS1595	PF12760.2	gi|146303516|ref|YP_001190832.1|	-	1.6	8.6	5.0	3	7.7	0.4	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|146303516|ref|YP_001190832.1|	-	2.7	7.6	8.4	2.4	7.8	0.1	2.2	2	0	0	2	2	2	0	Sec23/Sec24	zinc	finger
RmlD_sub_bind	PF04321.12	gi|146303517|ref|YP_001190833.1|	-	3.3e-16	59.0	0.0	4.1e-16	58.7	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|146303517|ref|YP_001190833.1|	-	3.6e-07	29.8	0.0	6.5e-07	29.0	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
DBI_PRT	PF02277.12	gi|146303518|ref|YP_001190834.1|	-	7.7e-26	90.9	4.1	1.3e-25	90.1	2.8	1.4	1	1	0	1	1	1	1	Phosphoribosyltransferase
Aminotran_5	PF00266.14	gi|146303520|ref|YP_001190836.1|	-	3.7e-50	170.7	0.0	5.2e-50	170.2	0.0	1.2	1	0	0	1	1	1	1	Aminotransferase	class-V
DegT_DnrJ_EryC1	PF01041.12	gi|146303520|ref|YP_001190836.1|	-	2.4e-05	23.5	0.0	4.6e-05	22.6	0.0	1.3	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_1_2	PF00155.16	gi|146303520|ref|YP_001190836.1|	-	8.7e-05	21.6	0.0	0.00053	19.0	0.0	1.9	2	0	0	2	2	2	1	Aminotransferase	class	I	and	II
Cys_Met_Meta_PP	PF01053.15	gi|146303520|ref|YP_001190836.1|	-	0.00052	18.4	0.0	0.00089	17.6	0.0	1.3	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
SLA_LP_auto_ag	PF05889.8	gi|146303520|ref|YP_001190836.1|	-	0.053	11.9	0.4	0.95	7.8	0.1	2.6	2	1	0	2	2	2	0	Soluble	liver	antigen/liver	pancreas	antigen	(SLA/LP	autoantigen)
Zn-ribbon_8	PF09723.5	gi|146303522|ref|YP_001190838.1|	-	0.0018	18.2	6.6	0.014	15.3	4.6	2.2	1	1	0	1	1	1	1	Zinc	ribbon	domain
zf-C3HC4_3	PF13920.1	gi|146303522|ref|YP_001190838.1|	-	0.0021	17.6	0.6	0.0031	17.1	0.4	1.2	1	0	0	1	1	1	1	Zinc	finger,	C3HC4	type	(RING	finger)
NOB1_Zn_bind	PF08772.6	gi|146303522|ref|YP_001190838.1|	-	0.004	16.9	1.4	0.0069	16.1	0.9	1.4	1	0	0	1	1	1	1	Nin	one	binding	(NOB1)	Zn-ribbon	like
zf-C2H2	PF00096.21	gi|146303522|ref|YP_001190838.1|	-	0.019	15.2	3.0	0.1	13.0	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
DZR	PF12773.2	gi|146303522|ref|YP_001190838.1|	-	0.027	14.3	1.2	0.041	13.6	0.8	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-RING_5	PF14634.1	gi|146303522|ref|YP_001190838.1|	-	0.049	13.3	1.4	0.078	12.7	1.0	1.3	1	0	0	1	1	1	0	zinc-RING	finger	domain
DUF1289	PF06945.8	gi|146303522|ref|YP_001190838.1|	-	0.05	13.0	0.8	0.14	11.6	0.5	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1289)
Prim_Zn_Ribbon	PF08273.7	gi|146303522|ref|YP_001190838.1|	-	0.13	12.3	0.2	0.13	12.3	0.1	2.0	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
TFIIS_C	PF01096.13	gi|146303522|ref|YP_001190838.1|	-	0.14	11.7	2.2	1.2	8.7	0.1	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-C2HC_2	PF13913.1	gi|146303522|ref|YP_001190838.1|	-	0.21	11.3	0.5	0.21	11.3	0.3	2.3	1	1	1	2	2	2	0	zinc-finger	of	a	C2HC-type
zf-NADH-PPase	PF09297.6	gi|146303522|ref|YP_001190838.1|	-	0.3	10.6	2.3	16	5.0	0.5	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zf-H2C2_2	PF13465.1	gi|146303522|ref|YP_001190838.1|	-	0.39	11.1	3.4	2	8.8	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
HypA	PF01155.14	gi|146303522|ref|YP_001190838.1|	-	0.42	10.3	2.7	0.62	9.7	1.9	1.6	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DUF2072	PF09845.4	gi|146303522|ref|YP_001190838.1|	-	1.9	8.4	4.6	4.1	7.3	1.7	2.0	2	0	0	2	2	2	0	Zn-ribbon	containing	protein	(DUF2072)
NAD_kinase	PF01513.16	gi|146303523|ref|YP_001190839.1|	-	1.1e-20	73.5	0.3	1.5e-20	73.1	0.2	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|146303523|ref|YP_001190839.1|	-	0.02	14.3	0.0	0.035	13.5	0.0	1.4	1	0	0	1	1	1	0	Diacylglycerol	kinase	catalytic	domain
Antitoxin-MazE	PF04014.13	gi|146303523|ref|YP_001190839.1|	-	0.062	13.0	0.0	0.29	10.9	0.0	2.1	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
Glyco_tran_28_C	PF04101.11	gi|146303523|ref|YP_001190839.1|	-	0.093	12.3	0.0	0.13	11.9	0.0	1.3	1	0	0	1	1	1	0	Glycosyltransferase	family	28	C-terminal	domain
MFS_1	PF07690.11	gi|146303524|ref|YP_001190840.1|	-	2e-25	89.2	43.4	2e-25	89.2	30.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|146303524|ref|YP_001190840.1|	-	5	5.0	14.1	0.1	10.6	0.8	2.9	2	1	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Pyr_redox_2	PF07992.9	gi|146303526|ref|YP_001190842.1|	-	3.3e-22	79.3	0.0	5.2e-22	78.7	0.0	1.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303526|ref|YP_001190842.1|	-	5.7e-19	68.9	0.6	1.1e-13	51.7	0.0	2.7	2	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303526|ref|YP_001190842.1|	-	2.8e-14	53.2	0.3	1.3e-10	41.5	0.0	3.0	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303526|ref|YP_001190842.1|	-	2.8e-10	39.2	1.6	5.3e-05	21.8	0.0	3.7	5	0	0	5	5	5	2	HI0933-like	protein
K_oxygenase	PF13434.1	gi|146303526|ref|YP_001190842.1|	-	3.7e-10	39.2	1.0	7e-09	35.0	0.0	2.8	3	1	1	4	4	4	1	L-lysine	6-monooxygenase	(NADPH-requiring)
DAO	PF01266.19	gi|146303526|ref|YP_001190842.1|	-	8.7e-08	31.4	3.2	0.0012	17.8	0.2	3.1	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|146303526|ref|YP_001190842.1|	-	3.6e-06	27.1	0.2	0.001	19.2	0.1	2.5	2	0	0	2	2	2	1	Putative	NAD(P)-binding
NAD_binding_8	PF13450.1	gi|146303526|ref|YP_001190842.1|	-	2.1e-05	24.4	0.1	0.00078	19.4	0.1	2.4	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|146303526|ref|YP_001190842.1|	-	0.00014	21.0	4.0	0.0039	16.3	0.1	3.5	4	1	0	4	4	4	1	Thi4	family
FMO-like	PF00743.14	gi|146303526|ref|YP_001190842.1|	-	0.00025	19.3	0.2	0.00069	17.9	0.0	1.7	2	0	0	2	2	2	1	Flavin-binding	monooxygenase-like
FAD_binding_2	PF00890.19	gi|146303526|ref|YP_001190842.1|	-	0.00053	18.9	2.5	1.2	7.9	0.0	4.3	2	1	0	4	4	4	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146303526|ref|YP_001190842.1|	-	0.00079	18.6	0.8	0.013	14.6	0.0	2.4	2	1	0	2	2	2	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303526|ref|YP_001190842.1|	-	0.0078	15.3	0.8	3.1	6.7	0.0	3.3	3	1	1	4	4	4	1	FAD	binding	domain
NAD_binding_9	PF13454.1	gi|146303526|ref|YP_001190842.1|	-	0.0093	15.7	2.5	2.4	7.9	0.0	3.3	3	1	0	3	3	3	1	FAD-NAD(P)-binding
Spermine_synth	PF01564.12	gi|146303526|ref|YP_001190842.1|	-	0.022	13.7	0.9	0.53	9.1	0.0	2.2	2	0	0	2	2	2	0	Spermine/spermidine	synthase
GIDA	PF01134.17	gi|146303526|ref|YP_001190842.1|	-	0.024	13.5	0.3	16	4.1	0.0	3.5	4	0	0	4	4	4	0	Glucose	inhibited	division	protein	A
Oxidored_nitro	PF00148.14	gi|146303526|ref|YP_001190842.1|	-	0.088	11.4	0.1	0.18	10.4	0.0	1.5	1	1	1	2	2	2	0	Nitrogenase	component	1	type	Oxidoreductase
Met_10	PF02475.11	gi|146303527|ref|YP_001190843.1|	-	1.5e-29	103.0	0.0	2.1e-29	102.5	0.0	1.1	1	0	0	1	1	1	1	Met-10+	like-protein
Methyltransf_26	PF13659.1	gi|146303527|ref|YP_001190843.1|	-	1.8e-06	27.9	0.0	3.4e-06	27.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303527|ref|YP_001190843.1|	-	1.1e-05	25.8	0.0	2.7e-05	24.5	0.0	1.8	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303527|ref|YP_001190843.1|	-	3.7e-05	23.3	0.0	8.4e-05	22.2	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146303527|ref|YP_001190843.1|	-	4.9e-05	22.5	0.0	0.00011	21.4	0.0	1.5	2	0	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|146303527|ref|YP_001190843.1|	-	0.00011	21.6	0.0	0.0015	17.9	0.0	2.1	2	0	0	2	2	2	1	Methyltransferase	small	domain
Methyltransf_15	PF09445.5	gi|146303527|ref|YP_001190843.1|	-	0.0035	16.9	0.0	0.043	13.3	0.0	2.1	1	1	1	2	2	2	1	RNA	cap	guanine-N2	methyltransferase
Methyltransf_25	PF13649.1	gi|146303527|ref|YP_001190843.1|	-	0.0039	17.5	0.0	0.0072	16.6	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
SAS4	PF15460.1	gi|146303527|ref|YP_001190843.1|	-	0.019	14.8	0.0	0.038	13.8	0.0	1.5	1	0	0	1	1	1	0	Something	about	silencing,	SAS,	complex	subunit	4
Methyltransf_18	PF12847.2	gi|146303527|ref|YP_001190843.1|	-	0.033	14.7	0.0	0.052	14.1	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
MetW	PF07021.7	gi|146303527|ref|YP_001190843.1|	-	0.077	12.3	0.0	0.24	10.7	0.0	1.8	1	1	1	2	2	2	0	Methionine	biosynthesis	protein	MetW
DUF371	PF04027.8	gi|146303528|ref|YP_001190844.1|	-	1.5e-42	144.3	0.0	1.9e-42	144.0	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF371)
Rpr2	PF04032.11	gi|146303529|ref|YP_001190845.1|	-	9.5e-19	67.0	0.2	1.2e-18	66.7	0.1	1.1	1	0	0	1	1	1	1	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
EMG1	PF03587.9	gi|146303530|ref|YP_001190846.1|	-	2.2e-41	141.4	0.0	2.4e-41	141.2	0.0	1.0	1	0	0	1	1	1	1	EMG1/NEP1	methyltransferase
DUF2312	PF10073.4	gi|146303531|ref|YP_001190847.1|	-	0.085	12.2	2.4	0.3	10.4	0.3	2.8	3	1	0	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2312)
RHH_1	PF01402.16	gi|146303531|ref|YP_001190847.1|	-	0.11	12.4	0.9	0.79	9.7	0.1	2.4	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
eRF1_2	PF03464.10	gi|146303532|ref|YP_001190848.1|	-	2e-35	122.0	0.0	3.6e-35	121.1	0.0	1.4	1	0	0	1	1	1	1	eRF1	domain	2
eRF1_3	PF03465.10	gi|146303532|ref|YP_001190848.1|	-	4.1e-21	75.3	2.9	1.4e-20	73.6	0.8	2.6	2	2	0	2	2	2	1	eRF1	domain	3
eRF1_1	PF03463.10	gi|146303532|ref|YP_001190848.1|	-	6e-16	58.2	0.0	1.3e-15	57.1	0.0	1.6	1	0	0	1	1	1	1	eRF1	domain	1
SpoU_sub_bind	PF08032.7	gi|146303532|ref|YP_001190848.1|	-	0.0035	17.4	0.1	0.011	15.8	0.0	1.8	1	0	0	1	1	1	1	RNA	2'-O	ribose	methyltransferase	substrate	binding
Pribosyltran	PF00156.22	gi|146303533|ref|YP_001190849.1|	-	1.7e-18	66.5	0.2	2.6e-18	65.9	0.2	1.2	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
Tox-REase-2	PF15646.1	gi|146303533|ref|YP_001190849.1|	-	0.041	13.7	0.0	0.072	12.9	0.0	1.4	1	0	0	1	1	1	0	Restriction	endonuclease	fold	toxin	2
UPRTase	PF14681.1	gi|146303533|ref|YP_001190849.1|	-	0.049	12.8	0.0	0.064	12.4	0.0	1.1	1	0	0	1	1	1	0	Uracil	phosphoribosyltransferase
PRTase_2	PF15609.1	gi|146303533|ref|YP_001190849.1|	-	0.1	11.8	0.1	0.14	11.4	0.1	1.2	1	0	0	1	1	1	0	Phosphoribosyl	transferase
MS_channel	PF00924.13	gi|146303535|ref|YP_001190851.1|	-	1.6e-19	70.0	3.2	1.6e-19	70.0	2.2	1.8	2	0	0	2	2	2	1	Mechanosensitive	ion	channel
Gly-zipper_OmpA	PF13436.1	gi|146303535|ref|YP_001190851.1|	-	0.025	14.2	9.7	0.038	13.6	6.7	1.2	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
DUF4117	PF13491.1	gi|146303535|ref|YP_001190851.1|	-	0.19	11.1	13.5	0.18	11.2	8.1	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4117)
DUF2244	PF10003.4	gi|146303535|ref|YP_001190851.1|	-	0.27	10.6	1.6	0.49	9.7	0.4	1.9	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
Bacteriocin_IIc	PF10439.4	gi|146303535|ref|YP_001190851.1|	-	2.3	8.4	10.4	4.2	7.5	7.2	1.5	1	0	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
DUF998	PF06197.8	gi|146303536|ref|YP_001190852.1|	-	7.7e-32	110.0	11.2	9e-32	109.8	7.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF998)
DUF4229	PF14012.1	gi|146303536|ref|YP_001190852.1|	-	0.016	15.0	0.4	0.016	15.0	0.3	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4229)
Hormone_1	PF00103.15	gi|146303537|ref|YP_001190853.1|	-	0.15	11.3	0.0	0.27	10.5	0.0	1.3	1	0	0	1	1	1	0	Somatotropin	hormone	family
Amidase	PF01425.16	gi|146303538|ref|YP_001190854.1|	-	7.8e-88	295.2	1.1	3.2e-87	293.2	0.7	1.7	1	1	0	1	1	1	1	Amidase
PEPcase_2	PF14010.1	gi|146303539|ref|YP_001190855.1|	-	1.2e-200	666.9	2.0	1.4e-200	666.8	1.4	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxylase
AhpC-TSA	PF00578.16	gi|146303540|ref|YP_001190856.1|	-	5.1e-43	145.6	0.0	5.9e-43	145.4	0.0	1.0	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146303540|ref|YP_001190856.1|	-	2.8e-27	95.0	0.0	3.3e-27	94.8	0.0	1.0	1	0	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.1	gi|146303540|ref|YP_001190856.1|	-	0.00018	21.5	0.0	0.00024	21.1	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin-like
DUF899	PF05988.7	gi|146303540|ref|YP_001190856.1|	-	0.00067	19.1	0.0	0.00088	18.7	0.0	1.2	1	0	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF899)
AhpC-TSA_2	PF13911.1	gi|146303540|ref|YP_001190856.1|	-	0.00079	19.3	0.0	0.0012	18.7	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	antioxidant	enzyme
M60-like	PF13402.1	gi|146303540|ref|YP_001190856.1|	-	0.0045	15.9	0.0	0.0052	15.7	0.0	1.1	1	0	0	1	1	1	1	Peptidase	M60-like	family
Carb_kinase	PF01256.12	gi|146303541|ref|YP_001190857.1|	-	4.5e-51	173.4	0.0	5.8e-51	173.1	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate	kinase
YjeF_N	PF03853.10	gi|146303541|ref|YP_001190857.1|	-	4.5e-42	143.5	0.0	9.5e-42	142.4	0.0	1.6	1	0	0	1	1	1	1	YjeF-related	protein	N-terminus
HK	PF02110.10	gi|146303541|ref|YP_001190857.1|	-	9.7e-07	28.2	0.0	1.4e-05	24.3	0.0	2.1	2	0	0	2	2	2	1	Hydroxyethylthiazole	kinase	family
Phos_pyr_kin	PF08543.7	gi|146303541|ref|YP_001190857.1|	-	0.00019	20.7	0.0	0.00039	19.6	0.0	1.4	1	0	0	1	1	1	1	Phosphomethylpyrimidine	kinase
adh_short	PF00106.20	gi|146303541|ref|YP_001190857.1|	-	0.0029	17.5	0.4	0.017	15.0	0.1	2.1	2	0	0	2	2	2	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146303541|ref|YP_001190857.1|	-	0.0091	15.6	1.3	0.011	15.4	0.1	1.6	2	0	0	2	2	2	1	KR	domain
DAO	PF01266.19	gi|146303541|ref|YP_001190857.1|	-	0.016	14.0	0.0	0.041	12.7	0.0	1.6	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
Phage_CII	PF05269.6	gi|146303542|ref|YP_001190858.1|	-	0.00026	20.9	1.5	3	7.8	0.0	3.4	3	0	0	3	3	3	2	Bacteriophage	CII	protein
Fz	PF01392.17	gi|146303542|ref|YP_001190858.1|	-	0.00035	20.9	4.7	3.5	8.0	0.1	3.1	1	1	2	3	3	3	2	Fz	domain
DUF3240	PF11582.3	gi|146303542|ref|YP_001190858.1|	-	0.0011	18.8	2.5	0.66	9.9	0.1	3.0	1	1	2	3	3	3	2	Protein	of	unknown	function	(DUF3240)
DUF905	PF06006.7	gi|146303542|ref|YP_001190858.1|	-	0.0023	17.2	0.7	18	4.7	0.0	3.2	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF905)
DUF2274	PF10038.4	gi|146303542|ref|YP_001190858.1|	-	0.0064	16.5	6.0	1.3	9.1	0.1	3.1	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF2274)
Ser_hydrolase	PF06821.8	gi|146303542|ref|YP_001190858.1|	-	0.0083	15.7	2.7	16	5.0	0.0	3.1	3	0	0	3	3	3	0	Serine	hydrolase
Rpr2	PF04032.11	gi|146303542|ref|YP_001190858.1|	-	0.016	15.0	0.6	40	4.1	0.0	3.1	3	0	0	3	3	3	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
Imm2	PF14426.1	gi|146303542|ref|YP_001190858.1|	-	0.025	14.5	1.2	0.18	11.8	0.0	2.8	3	0	0	3	3	3	0	Immunity	protein	Imm2
Imm22	PF15592.1	gi|146303542|ref|YP_001190858.1|	-	0.036	14.3	0.1	2	8.7	0.0	2.7	1	1	2	3	3	3	0	Immunity	protein	22
CABS1	PF15367.1	gi|146303542|ref|YP_001190858.1|	-	0.048	12.5	6.9	1.7	7.4	0.3	3.0	1	1	2	3	3	3	0	Calcium-binding	and	spermatid-specific	protein	1
DUF1878	PF08963.5	gi|146303542|ref|YP_001190858.1|	-	0.058	13.6	8.4	5.2	7.3	0.3	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1878)
DUF2024	PF09630.5	gi|146303542|ref|YP_001190858.1|	-	0.064	12.9	12.9	4.4	7.1	0.4	3.2	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF2024)
GATase_7	PF13537.1	gi|146303542|ref|YP_001190858.1|	-	0.088	12.5	3.9	19	4.9	0.1	3.2	1	1	2	3	3	3	0	Glutamine	amidotransferase	domain
APS_kinase	PF01583.15	gi|146303542|ref|YP_001190858.1|	-	0.13	11.9	2.8	28	4.3	0.1	3.0	1	1	2	3	3	3	0	Adenylylsulphate	kinase
DUF600	PF04634.7	gi|146303542|ref|YP_001190858.1|	-	0.21	11.6	3.3	19	5.2	0.3	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function,	DUF600
DUF2924	PF11149.3	gi|146303542|ref|YP_001190858.1|	-	1.9	8.5	5.6	10	6.1	0.5	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2924)
DUF863	PF05904.6	gi|146303542|ref|YP_001190858.1|	-	3	5.9	11.6	1.9	6.6	1.6	2.0	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF863)
Microtub_assoc	PF07989.6	gi|146303542|ref|YP_001190858.1|	-	6.1	6.7	17.9	11	5.9	0.3	3.9	4	0	0	4	4	4	0	Microtubule	associated
THP2	PF09432.5	gi|146303542|ref|YP_001190858.1|	-	9.3	6.1	10.2	17	5.2	0.5	3.2	2	1	2	4	4	4	0	Tho	complex	subunit	THP2
DUF87	PF01935.12	gi|146303543|ref|YP_001190859.1|	-	5.1e-44	150.8	0.2	8e-44	150.1	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|146303543|ref|YP_001190859.1|	-	2.1e-25	89.7	1.0	6.8e-25	88.1	0.7	1.8	1	1	0	1	1	1	1	AAA-like	domain
DUF853	PF05872.7	gi|146303543|ref|YP_001190859.1|	-	6.3e-13	47.9	0.2	6.2e-06	24.8	0.0	2.7	3	0	0	3	3	3	2	Bacterial	protein	of	unknown	function	(DUF853)
HAS-barrel	PF09378.5	gi|146303543|ref|YP_001190859.1|	-	5.4e-11	42.2	0.1	3.1e-10	39.8	0.0	2.3	2	0	0	2	2	2	1	HAS	barrel	domain
TrwB_AAD_bind	PF10412.4	gi|146303543|ref|YP_001190859.1|	-	1e-08	34.2	0.0	9.5e-06	24.4	0.0	2.2	2	0	0	2	2	2	2	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FtsK_SpoIIIE	PF01580.13	gi|146303543|ref|YP_001190859.1|	-	1.5e-06	27.8	2.7	6.9e-05	22.4	0.0	2.7	3	1	0	3	3	3	1	FtsK/SpoIIIE	family
PP2C_C	PF07830.8	gi|146303543|ref|YP_001190859.1|	-	0.27	11.3	2.0	0.42	10.7	0.0	2.2	2	0	0	2	2	2	0	Protein	serine/threonine	phosphatase	2C,	C-terminal	domain
Metallophos	PF00149.23	gi|146303544|ref|YP_001190860.1|	-	3.1e-12	46.3	0.8	5.9e-12	45.4	0.6	1.5	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|146303544|ref|YP_001190860.1|	-	3.6e-11	43.1	0.0	6.6e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
DUF217	PF02697.9	gi|146303544|ref|YP_001190860.1|	-	0.013	15.7	1.4	0.041	14.1	0.8	2.1	2	0	0	2	2	2	0	Uncharacterized	ACR,	COG1753
DUF3818	PF12825.2	gi|146303544|ref|YP_001190860.1|	-	0.065	11.9	0.3	0.11	11.1	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	in	PX-proteins	(DUF3818)
RA	PF00788.18	gi|146303544|ref|YP_001190860.1|	-	0.065	13.7	0.0	0.13	12.7	0.0	1.5	1	0	0	1	1	1	0	Ras	association	(RalGDS/AF-6)	domain
SMC_N	PF02463.14	gi|146303545|ref|YP_001190861.1|	-	1.7e-19	69.9	25.2	3.9e-19	68.7	17.5	1.7	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.1	gi|146303545|ref|YP_001190861.1|	-	4.2e-19	68.5	61.2	2.2e-08	33.0	5.9	5.8	2	1	3	5	5	5	4	AAA	domain
Rad50_zn_hook	PF04423.9	gi|146303545|ref|YP_001190861.1|	-	3e-14	52.1	0.6	3e-14	52.1	0.4	6.3	7	1	0	7	7	4	1	Rad50	zinc	hook	motif
AAA_23	PF13476.1	gi|146303545|ref|YP_001190861.1|	-	4.4e-11	43.5	100.2	1.5e+04	-7.5	69.5	5.8	1	1	0	1	1	0	0	AAA	domain
AAA_21	PF13304.1	gi|146303545|ref|YP_001190861.1|	-	2.8e-10	40.6	22.2	5.9e-06	26.4	2.1	4.4	2	2	2	4	4	4	2	AAA	domain
SbcCD_C	PF13558.1	gi|146303545|ref|YP_001190861.1|	-	2.7e-08	33.5	0.1	7.6e-08	32.1	0.0	1.8	1	0	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
IncA	PF04156.9	gi|146303545|ref|YP_001190861.1|	-	4.4e-07	29.6	114.9	0.0016	18.0	6.9	6.3	1	1	5	6	6	6	3	IncA	protein
AAA_29	PF13555.1	gi|146303545|ref|YP_001190861.1|	-	4.5e-06	26.0	0.0	1e-05	24.9	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_15	PF13175.1	gi|146303545|ref|YP_001190861.1|	-	1.1e-05	24.6	38.0	0.0008	18.5	0.0	3.2	2	1	0	2	2	2	1	AAA	ATPase	domain
Reo_sigmaC	PF04582.7	gi|146303545|ref|YP_001190861.1|	-	1.5e-05	24.3	24.7	0.041	13.0	0.2	5.2	2	2	4	6	6	6	4	Reovirus	sigma	C	capsid	protein
Tropomyosin_1	PF12718.2	gi|146303545|ref|YP_001190861.1|	-	2.1e-05	24.4	105.5	0.00025	20.9	14.2	6.6	2	2	3	5	5	5	2	Tropomyosin	like
AAA_27	PF13514.1	gi|146303545|ref|YP_001190861.1|	-	3.8e-05	21.6	90.6	0.0037	15.0	0.0	5.0	4	2	0	4	4	4	3	AAA	domain
HOOK	PF05622.7	gi|146303545|ref|YP_001190861.1|	-	5.2e-05	21.2	40.1	5.2e-05	21.2	27.8	2.2	2	0	0	2	2	1	1	HOOK	protein
ABC_tran	PF00005.22	gi|146303545|ref|YP_001190861.1|	-	0.00016	21.9	37.0	1.5e+04	-14.2	25.6	6.3	1	1	0	1	1	0	0	ABC	transporter
ADIP	PF11559.3	gi|146303545|ref|YP_001190861.1|	-	0.00062	19.6	14.1	0.00062	19.6	9.8	8.4	2	2	5	8	8	7	2	Afadin-	and	alpha	-actinin-Binding
Spc7	PF08317.6	gi|146303545|ref|YP_001190861.1|	-	0.0015	17.2	90.4	0.0074	14.9	6.0	6.3	2	2	4	6	6	5	4	Spc7	kinetochore	protein
DUF2353	PF09789.4	gi|146303545|ref|YP_001190861.1|	-	0.0015	17.8	16.4	0.0015	17.8	11.4	4.2	1	1	1	4	4	3	2	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF258	PF03193.11	gi|146303545|ref|YP_001190861.1|	-	0.0019	17.4	0.6	0.0071	15.5	0.0	2.3	2	0	0	2	2	1	1	Protein	of	unknown	function,	DUF258
Fib_alpha	PF08702.5	gi|146303545|ref|YP_001190861.1|	-	0.0022	18.1	2.0	0.0022	18.1	1.4	7.0	1	1	6	8	8	8	3	Fibrinogen	alpha/beta	chain	family
CENP-F_leu_zip	PF10473.4	gi|146303545|ref|YP_001190861.1|	-	0.0028	17.5	18.3	0.0028	17.5	12.7	6.1	2	2	3	5	5	3	1	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
TMF_TATA_bd	PF12325.3	gi|146303545|ref|YP_001190861.1|	-	0.0045	16.7	21.6	0.0045	16.7	15.0	7.8	2	2	6	8	8	7	2	TATA	element	modulatory	factor	1	TATA	binding
LPP	PF04728.8	gi|146303545|ref|YP_001190861.1|	-	0.0091	15.7	0.3	0.65	9.8	0.0	3.8	3	0	0	3	3	2	1	Lipoprotein	leucine-zipper
DUF869	PF05911.6	gi|146303545|ref|YP_001190861.1|	-	0.021	13.0	76.6	0.031	12.5	9.6	3.3	1	1	2	3	3	3	0	Plant	protein	of	unknown	function	(DUF869)
MMR_HSR1	PF01926.18	gi|146303545|ref|YP_001190861.1|	-	0.026	14.4	1.1	0.1	12.5	0.4	2.4	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
DUF3584	PF12128.3	gi|146303545|ref|YP_001190861.1|	-	0.04	11.2	79.6	0.014	12.7	14.9	3.7	1	1	1	3	3	3	0	Protein	of	unknown	function	(DUF3584)
ATG16	PF08614.6	gi|146303545|ref|YP_001190861.1|	-	0.044	13.5	91.9	0.068	12.9	10.2	7.7	1	1	4	5	5	4	0	Autophagy	protein	16	(ATG16)
Miro	PF08477.8	gi|146303545|ref|YP_001190861.1|	-	0.072	13.5	3.1	0.19	12.2	0.0	3.2	3	0	0	3	3	2	0	Miro-like	protein
Myosin_tail_1	PF01576.14	gi|146303545|ref|YP_001190861.1|	-	0.085	10.5	105.2	0.048	11.4	38.4	3.8	1	1	2	3	3	3	0	Myosin	tail
Spectrin	PF00435.16	gi|146303545|ref|YP_001190861.1|	-	0.26	11.6	71.8	0.26	11.5	2.7	8.4	1	1	8	9	9	9	0	Spectrin	repeat
TPR_MLP1_2	PF07926.7	gi|146303545|ref|YP_001190861.1|	-	0.4	10.4	86.7	0.026	14.2	10.0	7.2	1	1	4	5	5	4	0	TPR/MLP1/MLP2-like	protein
APG6	PF04111.7	gi|146303545|ref|YP_001190861.1|	-	0.52	9.3	96.7	0.066	12.2	17.0	5.5	1	1	4	6	6	6	0	Autophagy	protein	Apg6
Vip3A_N	PF12495.3	gi|146303545|ref|YP_001190861.1|	-	0.55	9.8	10.9	0.03	14.0	1.5	3.1	4	0	0	4	4	4	0	Vegetative	insecticide	protein	3A	N	terminal
Bacillus_HBL	PF05791.6	gi|146303545|ref|YP_001190861.1|	-	0.72	9.1	45.2	0.69	9.2	0.0	6.9	4	2	2	7	7	7	0	Bacillus	haemolytic	enterotoxin	(HBL)
SET	PF00856.23	gi|146303545|ref|YP_001190861.1|	-	1.5	9.0	0.0	1.5	9.0	0.0	3.4	2	1	0	2	2	1	0	SET	domain
NPV_P10	PF05531.7	gi|146303545|ref|YP_001190861.1|	-	2.3	8.5	38.6	3.1	8.0	0.1	9.4	6	3	4	10	10	10	0	Nucleopolyhedrovirus	P10	protein
MscS_porin	PF12795.2	gi|146303545|ref|YP_001190861.1|	-	3.1	7.0	70.5	0.054	12.8	7.5	4.9	2	2	2	4	4	4	0	Mechanosensitive	ion	channel	porin	domain
NurA	PF09376.5	gi|146303546|ref|YP_001190862.1|	-	4.3e-28	98.4	0.4	6.1e-28	97.9	0.3	1.2	1	0	0	1	1	1	1	NurA	domain
Methyltransf_11	PF08241.7	gi|146303547|ref|YP_001190863.1|	-	1.5e-09	38.1	0.0	3e-09	37.2	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303547|ref|YP_001190863.1|	-	0.01	16.1	0.0	0.022	15.1	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303547|ref|YP_001190863.1|	-	0.046	13.2	0.0	0.13	11.7	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
Homez	PF11569.3	gi|146303547|ref|YP_001190863.1|	-	0.18	10.8	0.5	2	7.5	0.0	2.1	2	0	0	2	2	2	0	Homeodomain	leucine-zipper	encoding,	Homez
CBS	PF00571.23	gi|146303549|ref|YP_001190865.1|	-	2e-43	145.8	10.8	7.1e-13	48.1	0.4	4.1	4	0	0	4	4	4	4	CBS	domain
Ribosomal_L9_C	PF03948.9	gi|146303549|ref|YP_001190865.1|	-	0.01	15.8	0.2	2.9	8.0	0.0	3.2	2	1	1	3	3	3	0	Ribosomal	protein	L9,	C-terminal	domain
PRC	PF05239.11	gi|146303549|ref|YP_001190865.1|	-	0.96	9.3	4.7	4.1	7.3	0.1	3.2	3	0	0	3	3	3	0	PRC-barrel	domain
FUR	PF01475.14	gi|146303550|ref|YP_001190866.1|	-	2.9e-22	78.8	0.0	3.4e-22	78.6	0.0	1.1	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_20	PF12840.2	gi|146303550|ref|YP_001190866.1|	-	0.0011	18.7	0.0	0.0021	17.8	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|146303550|ref|YP_001190866.1|	-	0.0052	16.3	0.1	0.11	12.2	0.0	2.6	2	1	0	2	2	2	1	HTH	domain
HTH_CodY	PF08222.6	gi|146303550|ref|YP_001190866.1|	-	0.0055	16.0	0.1	0.017	14.4	0.0	1.8	1	1	0	1	1	1	1	CodY	helix-turn-helix	domain
PadR	PF03551.9	gi|146303550|ref|YP_001190866.1|	-	0.0083	15.8	0.0	0.015	15.0	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HxlR	PF01638.12	gi|146303550|ref|YP_001190866.1|	-	0.0085	15.7	0.0	0.013	15.1	0.0	1.4	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
TrmB	PF01978.14	gi|146303550|ref|YP_001190866.1|	-	0.017	14.8	0.0	0.032	13.9	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Penicillinase_R	PF03965.11	gi|146303550|ref|YP_001190866.1|	-	0.018	15.1	0.0	0.027	14.5	0.0	1.3	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_32	PF13565.1	gi|146303550|ref|YP_001190866.1|	-	0.025	15.3	0.0	0.043	14.6	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_24	PF13412.1	gi|146303550|ref|YP_001190866.1|	-	0.045	13.1	1.0	0.15	11.4	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
DUF4423	PF14394.1	gi|146303550|ref|YP_001190866.1|	-	0.087	12.3	0.0	0.12	11.9	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
GntR	PF00392.16	gi|146303550|ref|YP_001190866.1|	-	0.14	11.6	0.0	0.3	10.5	0.0	1.6	1	1	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
IU_nuc_hydro	PF01156.14	gi|146303551|ref|YP_001190867.1|	-	9.5e-82	274.6	0.0	1.1e-81	274.5	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
AAA_23	PF13476.1	gi|146303552|ref|YP_001190868.1|	-	3.5e-07	30.7	32.6	3.5e-07	30.7	22.6	3.5	1	1	1	2	2	2	1	AAA	domain
FlxA	PF14282.1	gi|146303552|ref|YP_001190868.1|	-	0.0015	18.4	54.7	0.14	12.0	3.2	4.4	2	2	2	4	4	4	4	FlxA-like	protein
Matrilin_ccoil	PF10393.4	gi|146303552|ref|YP_001190868.1|	-	0.021	14.1	0.6	0.021	14.1	0.4	4.3	4	1	1	5	5	5	0	Trimeric	coiled-coil	oligomerisation	domain	of	matrilin
AAA_13	PF13166.1	gi|146303552|ref|YP_001190868.1|	-	0.03	12.8	55.2	0.015	13.8	5.8	3.7	1	1	2	4	4	4	0	AAA	domain
DUF3198	PF11433.3	gi|146303552|ref|YP_001190868.1|	-	0.063	13.1	10.1	8.1	6.4	1.0	4.2	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3198)
SMC_N	PF02463.14	gi|146303552|ref|YP_001190868.1|	-	0.064	12.4	25.0	2.9	7.0	16.8	2.6	2	1	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
Filament	PF00038.16	gi|146303552|ref|YP_001190868.1|	-	0.2	11.0	55.0	2.1	7.7	3.6	3.0	2	1	0	2	2	2	0	Intermediate	filament	protein
DUF869	PF05911.6	gi|146303552|ref|YP_001190868.1|	-	0.8	7.8	50.3	0.82	7.8	12.2	2.1	1	1	1	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
DUF3450	PF11932.3	gi|146303552|ref|YP_001190868.1|	-	3.5	6.8	35.2	0.96	8.6	5.7	4.6	2	2	1	4	4	4	0	Protein	of	unknown	function	(DUF3450)
Reo_sigmaC	PF04582.7	gi|146303552|ref|YP_001190868.1|	-	4	6.5	10.0	4.6	6.3	2.2	2.6	2	1	1	3	3	3	0	Reovirus	sigma	C	capsid	protein
CBS	PF00571.23	gi|146303554|ref|YP_001190870.1|	-	5.6e-32	109.2	3.7	5.5e-17	61.2	0.1	2.1	2	0	0	2	2	2	2	CBS	domain
DUF1840	PF08895.6	gi|146303554|ref|YP_001190870.1|	-	0.0016	18.4	1.2	1.5	8.8	0.0	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF1840)
Ribosomal_L9_C	PF03948.9	gi|146303554|ref|YP_001190870.1|	-	0.017	15.1	0.2	3.2	7.8	0.0	2.3	1	1	1	2	2	2	0	Ribosomal	protein	L9,	C-terminal	domain
Rad50_zn_hook	PF04423.9	gi|146303554|ref|YP_001190870.1|	-	0.018	14.4	0.0	0.036	13.5	0.0	1.5	1	0	0	1	1	1	0	Rad50	zinc	hook	motif
IF3_N	PF05198.11	gi|146303554|ref|YP_001190870.1|	-	0.25	11.2	1.9	22	5.0	0.0	3.0	2	2	0	2	2	2	0	Translation	initiation	factor	IF-3,	N-terminal	domain
Metallophos_2	PF12850.2	gi|146303555|ref|YP_001190871.1|	-	1.7e-06	27.9	0.0	9.3e-06	25.5	0.0	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|146303555|ref|YP_001190871.1|	-	0.00081	18.6	0.1	0.0021	17.2	0.1	1.7	1	0	0	1	1	1	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|146303555|ref|YP_001190871.1|	-	0.023	14.0	5.8	0.56	9.5	4.0	2.7	1	1	0	1	1	1	0	Calcineurin-like	phosphoesterase
His_Phos_1	PF00300.17	gi|146303556|ref|YP_001190872.1|	-	1.6e-26	93.3	0.0	2e-26	92.9	0.0	1.1	1	0	0	1	1	1	1	Histidine	phosphatase	superfamily	(branch	1)
ATP_bind_4	PF01902.12	gi|146303556|ref|YP_001190872.1|	-	0.1	11.9	0.1	16	4.8	0.0	2.6	1	1	2	3	3	3	0	ATP-binding	region
tRNA_deacylase	PF04414.7	gi|146303557|ref|YP_001190873.1|	-	2.2e-62	209.9	0.1	2.6e-62	209.7	0.1	1.0	1	0	0	1	1	1	1	D-aminoacyl-tRNA	deacylase
DAO	PF01266.19	gi|146303558|ref|YP_001190874.1|	-	1.9e-15	56.6	0.0	2.9e-13	49.4	0.0	2.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|146303558|ref|YP_001190874.1|	-	0.056	13.3	0.0	0.087	12.6	0.0	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303558|ref|YP_001190874.1|	-	0.24	11.8	2.8	1.3	9.4	2.0	2.2	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thioredoxin	PF00085.15	gi|146303559|ref|YP_001190875.1|	-	1e-26	92.5	0.0	1.5e-26	92.0	0.0	1.2	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|146303559|ref|YP_001190875.1|	-	5.2e-08	33.0	0.4	3.3e-06	27.2	0.0	2.5	2	1	0	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|146303559|ref|YP_001190875.1|	-	1.5e-06	28.2	0.1	0.0024	17.9	0.0	2.6	2	1	1	3	3	3	2	Thioredoxin-like
Phosducin	PF02114.11	gi|146303559|ref|YP_001190875.1|	-	0.00012	20.9	0.0	0.00016	20.5	0.0	1.1	1	0	0	1	1	1	1	Phosducin
Thioredoxin_9	PF14595.1	gi|146303559|ref|YP_001190875.1|	-	0.00013	21.4	0.2	0.00031	20.3	0.1	1.6	1	1	1	2	2	2	1	Thioredoxin
AhpC-TSA	PF00578.16	gi|146303559|ref|YP_001190875.1|	-	0.00023	20.8	0.1	0.15	11.7	0.0	2.3	1	1	1	2	2	2	2	AhpC/TSA	family
HyaE	PF07449.6	gi|146303559|ref|YP_001190875.1|	-	0.00035	20.4	0.0	0.001	18.9	0.0	1.8	1	1	0	1	1	1	1	Hydrogenase-1	expression	protein	HyaE
Redoxin	PF08534.5	gi|146303559|ref|YP_001190875.1|	-	0.0014	18.1	0.0	0.0033	16.9	0.0	1.5	1	1	1	2	2	2	1	Redoxin
Thioredoxin_3	PF13192.1	gi|146303559|ref|YP_001190875.1|	-	0.002	17.8	0.1	0.0049	16.6	0.0	1.7	2	0	0	2	2	2	1	Thioredoxin	domain
Thioredoxin_7	PF13899.1	gi|146303559|ref|YP_001190875.1|	-	0.069	13.1	1.4	2.2	8.3	0.5	2.7	1	1	1	2	2	2	0	Thioredoxin-like
NTPase_I-T	PF01931.13	gi|146303561|ref|YP_001190877.1|	-	6.2e-42	143.1	0.1	7e-42	143.0	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF84
VitK2_biosynth	PF02621.9	gi|146303562|ref|YP_001190878.1|	-	1.9e-46	158.3	0.0	2.1e-46	158.1	0.0	1.0	1	0	0	1	1	1	1	Menaquinone	biosynthesis
Rhodanese	PF00581.15	gi|146303563|ref|YP_001190879.1|	-	2.4e-11	43.9	0.0	3.4e-11	43.4	0.0	1.2	1	0	0	1	1	1	1	Rhodanese-like	domain
AIRS_C	PF02769.17	gi|146303564|ref|YP_001190880.1|	-	5.7e-06	26.4	0.1	2e-05	24.6	0.0	1.9	1	1	1	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
HeH	PF12949.2	gi|146303564|ref|YP_001190880.1|	-	0.14	11.7	1.0	4.3	6.9	0.1	2.5	2	0	0	2	2	2	0	HeH/LEM	domain
Ald_Xan_dh_C2	PF02738.13	gi|146303565|ref|YP_001190881.1|	-	2.2e-141	471.8	0.0	2.7e-141	471.5	0.0	1.0	1	0	0	1	1	1	1	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146303565|ref|YP_001190881.1|	-	1.6e-25	89.3	0.0	3.6e-25	88.2	0.0	1.6	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
DUF2203	PF09969.4	gi|146303566|ref|YP_001190882.1|	-	1.6e-35	121.9	0.1	2.4e-35	121.3	0.1	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2203)
OEP	PF02321.13	gi|146303566|ref|YP_001190882.1|	-	0.16	11.5	0.4	0.21	11.1	0.3	1.1	1	0	0	1	1	1	0	Outer	membrane	efflux	protein
Cadherin-like	PF12733.2	gi|146303569|ref|YP_001190885.1|	-	0.049	13.9	2.8	1.4	9.2	0.1	2.6	1	1	1	2	2	2	0	Cadherin-like	beta	sandwich	domain
Thioredox_DsbH	PF03190.10	gi|146303570|ref|YP_001190886.1|	-	1.2e-60	203.9	0.0	2e-60	203.1	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF255
Thioredoxin_7	PF13899.1	gi|146303570|ref|YP_001190886.1|	-	1.1e-17	63.7	0.1	2.2e-17	62.8	0.1	1.5	1	0	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.1	gi|146303570|ref|YP_001190886.1|	-	1.5e-06	28.3	0.0	3.3e-06	27.2	0.0	1.5	1	0	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin	PF00085.15	gi|146303570|ref|YP_001190886.1|	-	3.7e-05	23.3	0.1	8.1e-05	22.2	0.1	1.5	1	0	0	1	1	1	1	Thioredoxin
adh_short_C2	PF13561.1	gi|146303571|ref|YP_001190887.1|	-	3.9e-20	72.6	0.0	7.8e-20	71.6	0.0	1.5	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|146303571|ref|YP_001190887.1|	-	7e-15	55.3	0.1	9.1e-15	54.9	0.1	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146303571|ref|YP_001190887.1|	-	6.8e-05	22.6	0.2	0.00013	21.7	0.1	1.5	1	1	0	1	1	1	1	KR	domain
DUF4350	PF14258.1	gi|146303571|ref|YP_001190887.1|	-	0.0023	18.0	0.9	0.45	10.7	0.1	2.8	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4350)
THF_DHG_CYH_C	PF02882.14	gi|146303571|ref|YP_001190887.1|	-	0.0032	16.5	0.0	0.0061	15.6	0.0	1.5	1	0	0	1	1	1	1	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146303571|ref|YP_001190887.1|	-	0.041	13.6	0.0	0.08	12.6	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_10	PF13460.1	gi|146303571|ref|YP_001190887.1|	-	0.057	13.4	0.1	0.74	9.7	0.1	2.1	1	1	0	1	1	1	0	NADH(P)-binding
YjeF_N	PF03853.10	gi|146303571|ref|YP_001190887.1|	-	0.12	11.9	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	YjeF-related	protein	N-terminus
ubiquitin	PF00240.18	gi|146303571|ref|YP_001190887.1|	-	0.14	11.5	0.2	1.7	8.1	0.0	2.5	3	0	0	3	3	3	0	Ubiquitin	family
Glyco_transf_21	PF13506.1	gi|146303573|ref|YP_001190889.1|	-	7.5e-18	64.4	0.0	1.9e-17	63.1	0.0	1.6	1	1	1	2	2	2	1	Glycosyl	transferase	family	21
Glycos_transf_2	PF00535.21	gi|146303573|ref|YP_001190889.1|	-	3.6e-16	59.3	0.0	5.6e-16	58.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|146303573|ref|YP_001190889.1|	-	1.4e-15	57.7	0.0	1.8e-15	57.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|146303573|ref|YP_001190889.1|	-	0.055	13.1	5.0	0.12	12.0	3.4	1.5	1	1	0	1	1	1	0	Glycosyl	transferase	family	group	2
Trp_repressor	PF01371.14	gi|146303574|ref|YP_001190890.1|	-	3.3e-06	26.9	0.2	5.7e-06	26.1	0.1	1.5	1	1	0	1	1	1	1	Trp	repressor	protein
HTH_23	PF13384.1	gi|146303574|ref|YP_001190890.1|	-	4.5e-06	26.1	0.0	2.2e-05	23.9	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|146303574|ref|YP_001190890.1|	-	2.3e-05	23.8	0.1	4e-05	23.0	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_7	PF02796.10	gi|146303574|ref|YP_001190890.1|	-	4.2e-05	23.3	0.3	0.00027	20.7	0.1	2.2	2	1	0	2	2	2	1	Helix-turn-helix	domain	of	resolvase
GerE	PF00196.14	gi|146303574|ref|YP_001190890.1|	-	0.00097	18.4	0.0	0.0015	17.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
HTH_28	PF13518.1	gi|146303574|ref|YP_001190890.1|	-	0.0011	18.8	0.0	0.0019	18.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|146303574|ref|YP_001190890.1|	-	0.0023	17.3	0.1	0.0042	16.5	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|146303574|ref|YP_001190890.1|	-	0.0027	17.2	0.0	0.15	11.5	0.0	2.4	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_3	PF01381.17	gi|146303574|ref|YP_001190890.1|	-	0.0043	16.8	0.0	0.0095	15.7	0.0	1.6	2	0	0	2	2	1	1	Helix-turn-helix
HTH_24	PF13412.1	gi|146303574|ref|YP_001190890.1|	-	0.0059	15.9	0.0	0.076	12.4	0.0	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_ISL3	PF13542.1	gi|146303574|ref|YP_001190890.1|	-	0.006	15.7	0.3	0.033	13.3	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_29	PF13551.1	gi|146303574|ref|YP_001190890.1|	-	0.01	15.9	0.0	0.024	14.8	0.0	1.6	1	1	0	1	1	1	0	Winged	helix-turn	helix
HTH_17	PF12728.2	gi|146303574|ref|YP_001190890.1|	-	0.016	15.4	0.1	0.068	13.4	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Phage_terminase	PF10668.4	gi|146303574|ref|YP_001190890.1|	-	0.029	14.1	0.0	0.053	13.2	0.0	1.4	1	0	0	1	1	1	0	Phage	terminase	small	subunit
Sigma70_r4	PF04545.11	gi|146303574|ref|YP_001190890.1|	-	0.034	13.4	0.0	0.066	12.5	0.0	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Tnp_1	PF01527.15	gi|146303574|ref|YP_001190890.1|	-	0.047	13.6	0.0	0.066	13.1	0.0	1.3	1	0	0	1	1	1	0	Transposase
HTH_psq	PF05225.11	gi|146303574|ref|YP_001190890.1|	-	0.083	12.4	0.0	0.17	11.4	0.0	1.5	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_Crp_2	PF13545.1	gi|146303574|ref|YP_001190890.1|	-	0.095	12.5	0.0	0.21	11.3	0.0	1.6	2	0	0	2	2	1	0	Crp-like	helix-turn-helix	domain
NUMOD1	PF07453.8	gi|146303574|ref|YP_001190890.1|	-	0.096	12.5	0.2	0.16	11.8	0.1	1.4	1	0	0	1	1	1	0	NUMOD1	domain
HTH_10	PF04967.7	gi|146303574|ref|YP_001190890.1|	-	0.12	12.0	0.0	0.18	11.3	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_36	PF13730.1	gi|146303574|ref|YP_001190890.1|	-	0.12	12.4	0.0	0.26	11.4	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|146303574|ref|YP_001190890.1|	-	0.13	11.9	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	HTH	domain
MttA_Hcf106	PF02416.11	gi|146303576|ref|YP_001190892.1|	-	1.1e-11	43.5	0.9	2.3e-11	42.5	0.6	1.7	1	1	0	1	1	1	1	mttA/Hcf106	family
DUF3294	PF07957.6	gi|146303576|ref|YP_001190892.1|	-	0.0026	17.3	6.5	0.0033	16.9	4.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3294)
DUF3450	PF11932.3	gi|146303576|ref|YP_001190892.1|	-	0.003	16.8	2.5	0.003	16.8	1.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
DUF1510	PF07423.6	gi|146303576|ref|YP_001190892.1|	-	0.0062	15.9	0.4	0.0071	15.7	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1510)
DUF2968	PF11180.3	gi|146303576|ref|YP_001190892.1|	-	0.0077	15.6	10.0	0.0096	15.3	6.9	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2968)
DUF3393	PF11873.3	gi|146303576|ref|YP_001190892.1|	-	0.013	14.9	0.2	0.014	14.8	0.1	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3393)
Dynamitin	PF04912.9	gi|146303576|ref|YP_001190892.1|	-	0.017	13.9	4.5	0.018	13.8	3.1	1.0	1	0	0	1	1	1	0	Dynamitin
EMP24_GP25L	PF01105.19	gi|146303576|ref|YP_001190892.1|	-	0.018	14.7	2.6	0.027	14.1	1.8	1.3	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
ROS_MUCR	PF05443.6	gi|146303576|ref|YP_001190892.1|	-	0.023	14.4	0.5	2	8.2	0.0	2.0	1	1	1	2	2	2	0	ROS/MUCR	transcriptional	regulator	protein
DUF3573	PF12097.3	gi|146303576|ref|YP_001190892.1|	-	0.026	13.1	1.1	0.025	13.2	0.8	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
APG6	PF04111.7	gi|146303576|ref|YP_001190892.1|	-	0.054	12.5	5.3	0.067	12.2	3.7	1.0	1	0	0	1	1	1	0	Autophagy	protein	Apg6
ANTH	PF07651.11	gi|146303576|ref|YP_001190892.1|	-	0.058	12.0	2.0	0.071	11.8	1.4	1.2	1	0	0	1	1	1	0	ANTH	domain
V_ATPase_I	PF01496.14	gi|146303576|ref|YP_001190892.1|	-	0.058	11.2	0.6	0.061	11.1	0.4	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
Complex1_LYR_2	PF13233.1	gi|146303576|ref|YP_001190892.1|	-	0.063	13.7	1.1	0.072	13.5	0.8	1.1	1	0	0	1	1	1	0	Complex1_LYR-like
DUF2149	PF09919.4	gi|146303576|ref|YP_001190892.1|	-	0.065	13.3	3.0	0.15	12.2	2.1	1.7	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2149)
PetL	PF05115.9	gi|146303576|ref|YP_001190892.1|	-	0.11	12.4	2.0	0.16	11.9	1.4	1.2	1	0	0	1	1	1	0	Cytochrome	B6-F	complex	subunit	VI	(PetL)
Ribosomal_L29	PF00831.18	gi|146303576|ref|YP_001190892.1|	-	0.12	12.1	4.1	0.1	12.2	1.8	1.7	1	1	1	2	2	2	0	Ribosomal	L29	protein
Mnd1	PF03962.10	gi|146303576|ref|YP_001190892.1|	-	0.16	11.6	5.9	0.18	11.4	4.1	1.0	1	0	0	1	1	1	0	Mnd1	family
HflK_N	PF12221.3	gi|146303576|ref|YP_001190892.1|	-	0.21	11.3	1.6	1.2	8.9	0.1	2.1	2	0	0	2	2	2	0	Bacterial	membrane	protein	N	terminal
DUF4446	PF14584.1	gi|146303576|ref|YP_001190892.1|	-	0.25	11.1	3.4	1.2	8.9	2.2	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF4446)
DUF4140	PF13600.1	gi|146303576|ref|YP_001190892.1|	-	0.31	11.5	3.1	0.4	11.1	2.1	1.1	1	0	0	1	1	1	0	N-terminal	domain	of	unknown	function	(DUF4140)
Sigma_reg_N	PF13800.1	gi|146303576|ref|YP_001190892.1|	-	0.43	10.6	2.4	1.2	9.2	1.6	1.7	1	1	0	1	1	1	0	Sigma	factor	regulator	N-terminal
FlxA	PF14282.1	gi|146303576|ref|YP_001190892.1|	-	1.8	8.5	20.8	35	4.4	14.0	2.0	1	1	1	2	2	2	0	FlxA-like	protein
DUF4407	PF14362.1	gi|146303576|ref|YP_001190892.1|	-	2	7.3	7.7	2.7	6.8	5.3	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4407)
Spc24	PF08286.6	gi|146303576|ref|YP_001190892.1|	-	7.4	6.3	8.6	1e+02	2.6	6.0	2.1	1	1	0	1	1	1	0	Spc24	subunit	of	Ndc80
EAP30	PF04157.11	gi|146303576|ref|YP_001190892.1|	-	9.5	5.3	9.1	13	4.8	6.3	1.2	1	0	0	1	1	1	0	EAP30/Vps36	family
MttA_Hcf106	PF02416.11	gi|146303577|ref|YP_001190893.1|	-	1.8e-05	23.7	0.2	2.2e-05	23.4	0.1	1.5	1	1	0	1	1	1	1	mttA/Hcf106	family
TMF_DNA_bd	PF12329.3	gi|146303577|ref|YP_001190893.1|	-	0.00045	19.9	5.6	0.087	12.6	0.3	2.1	2	0	0	2	2	2	2	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin_2	PF01920.15	gi|146303577|ref|YP_001190893.1|	-	0.0015	18.2	1.9	0.68	9.7	0.2	2.1	2	0	0	2	2	2	2	Prefoldin	subunit
DivIC	PF04977.10	gi|146303577|ref|YP_001190893.1|	-	0.0024	17.2	1.2	0.2	11.1	0.2	2.2	2	0	0	2	2	2	1	Septum	formation	initiator
DUF3375	PF11855.3	gi|146303577|ref|YP_001190893.1|	-	0.0027	16.5	1.3	0.0042	15.8	0.2	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3375)
FlxA	PF14282.1	gi|146303577|ref|YP_001190893.1|	-	0.0035	17.2	1.4	0.068	13.1	0.0	2.1	2	0	0	2	2	2	1	FlxA-like	protein
Med9	PF07544.8	gi|146303577|ref|YP_001190893.1|	-	0.0058	16.3	0.6	0.085	12.6	0.0	2.2	2	0	0	2	2	2	1	RNA	polymerase	II	transcription	mediator	complex	subunit	9
Myosin_tail_1	PF01576.14	gi|146303577|ref|YP_001190893.1|	-	0.0072	14.1	0.2	0.0096	13.6	0.1	1.1	1	0	0	1	1	1	1	Myosin	tail
GrpE	PF01025.14	gi|146303577|ref|YP_001190893.1|	-	0.018	14.5	0.5	4.9	6.6	0.1	2.1	2	0	0	2	2	2	0	GrpE
Ctf8	PF09696.5	gi|146303577|ref|YP_001190893.1|	-	0.02	14.6	0.0	0.03	14.1	0.0	1.3	1	0	0	1	1	1	0	Ctf8
DUF948	PF06103.6	gi|146303577|ref|YP_001190893.1|	-	0.025	14.4	0.1	0.33	10.8	0.0	2.0	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
Snapin_Pallidin	PF14712.1	gi|146303577|ref|YP_001190893.1|	-	0.032	14.5	0.8	8.6	6.7	0.0	2.1	2	0	0	2	2	2	0	Snapin/Pallidin
Fib_alpha	PF08702.5	gi|146303577|ref|YP_001190893.1|	-	0.033	14.3	0.0	0.048	13.7	0.0	1.1	1	0	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
CorA	PF01544.13	gi|146303577|ref|YP_001190893.1|	-	0.035	13.1	0.2	0.035	13.1	0.2	1.3	2	0	0	2	2	1	0	CorA-like	Mg2+	transporter	protein
DUF972	PF06156.8	gi|146303577|ref|YP_001190893.1|	-	0.036	14.4	0.1	9.9	6.5	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF972)
bZIP_2	PF07716.10	gi|146303577|ref|YP_001190893.1|	-	0.044	13.6	2.7	0.55	10.0	0.5	2.2	2	0	0	2	2	2	0	Basic	region	leucine	zipper
DivIVA	PF05103.8	gi|146303577|ref|YP_001190893.1|	-	0.045	13.7	0.2	10	6.1	0.0	2.0	2	0	0	2	2	2	0	DivIVA	protein
TMF_TATA_bd	PF12325.3	gi|146303577|ref|YP_001190893.1|	-	0.05	13.3	1.2	2.1	8.0	0.0	2.1	2	0	0	2	2	2	0	TATA	element	modulatory	factor	1	TATA	binding
DUF4200	PF13863.1	gi|146303577|ref|YP_001190893.1|	-	0.067	13.1	0.9	0.54	10.2	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
Seryl_tRNA_N	PF02403.17	gi|146303577|ref|YP_001190893.1|	-	0.068	13.1	0.6	8.7	6.4	0.1	2.1	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Paralemmin	PF03285.10	gi|146303577|ref|YP_001190893.1|	-	0.071	12.5	0.5	0.071	12.5	0.3	1.6	1	1	1	2	2	2	0	Paralemmin
MHC2-interact	PF09307.5	gi|146303577|ref|YP_001190893.1|	-	0.087	12.6	0.5	0.97	9.2	0.0	2.0	1	1	1	2	2	2	0	CLIP,	MHC2	interacting
DUF1469	PF07332.6	gi|146303577|ref|YP_001190893.1|	-	0.088	12.5	0.8	0.21	11.3	0.0	1.9	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF1469)
DUF2205	PF10224.4	gi|146303577|ref|YP_001190893.1|	-	0.097	12.2	1.3	10	5.7	0.1	2.3	2	1	0	2	2	2	0	Predicted	coiled-coil	protein	(DUF2205)
Cluap1	PF10234.4	gi|146303577|ref|YP_001190893.1|	-	0.097	11.8	0.2	0.13	11.4	0.1	1.1	1	0	0	1	1	1	0	Clusterin-associated	protein-1
DUF1192	PF06698.6	gi|146303577|ref|YP_001190893.1|	-	0.098	12.4	2.3	0.14	11.9	0.3	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1192)
Spc24	PF08286.6	gi|146303577|ref|YP_001190893.1|	-	0.11	12.2	1.3	6.5	6.4	0.0	2.1	2	0	0	2	2	2	0	Spc24	subunit	of	Ndc80
DUF4140	PF13600.1	gi|146303577|ref|YP_001190893.1|	-	0.11	12.9	4.0	0.11	12.9	0.6	2.0	1	1	1	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
ATG16	PF08614.6	gi|146303577|ref|YP_001190893.1|	-	0.11	12.2	1.8	1.5	8.5	0.2	2.0	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
PilJ	PF13675.1	gi|146303577|ref|YP_001190893.1|	-	0.13	12.5	0.4	1.2	9.5	0.0	2.0	1	1	1	2	2	2	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
CENP-K	PF11802.3	gi|146303577|ref|YP_001190893.1|	-	0.13	11.4	0.7	0.4	9.8	0.4	1.7	1	1	0	1	1	1	0	Centromere-associated	protein	K
DUF3573	PF12097.3	gi|146303577|ref|YP_001190893.1|	-	0.16	10.5	0.0	0.24	9.9	0.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3573)
Macoilin	PF09726.4	gi|146303577|ref|YP_001190893.1|	-	0.24	9.6	1.3	0.83	7.8	0.8	1.6	1	1	1	2	2	2	0	Transmembrane	protein
IFP_35_N	PF07334.8	gi|146303577|ref|YP_001190893.1|	-	0.29	11.1	2.0	1.8	8.5	0.5	2.2	2	0	0	2	2	2	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
Mnd1	PF03962.10	gi|146303577|ref|YP_001190893.1|	-	0.32	10.6	2.3	1.7	8.2	1.6	1.8	1	1	0	1	1	1	0	Mnd1	family
CENP-Q	PF13094.1	gi|146303577|ref|YP_001190893.1|	-	0.33	10.9	4.7	0.76	9.7	0.7	2.0	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
AKNA	PF12443.3	gi|146303577|ref|YP_001190893.1|	-	1.4	8.9	3.8	6.1	6.9	0.6	2.2	1	1	1	2	2	2	0	AT-hook-containing	transcription	factor
DUF1049	PF06305.6	gi|146303577|ref|YP_001190893.1|	-	1.7	8.1	6.8	1.6	8.2	1.1	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1049)
Sugarporin_N	PF11471.3	gi|146303577|ref|YP_001190893.1|	-	2.8	7.6	5.0	7.2	6.3	0.9	2.4	2	0	0	2	2	2	0	Maltoporin	periplasmic	N-terminal	extension
TatC	PF00902.13	gi|146303578|ref|YP_001190894.1|	-	1.4e-51	174.9	22.6	2.2e-51	174.3	15.7	1.3	1	0	0	1	1	1	1	Sec-independent	protein	translocase	protein	(TatC)
TetR_C_8	PF14278.1	gi|146303579|ref|YP_001190895.1|	-	0.016	15.5	0.0	0.042	14.2	0.0	1.6	2	0	0	2	2	2	0	Transcriptional	regulator	C-terminal	region
HTH_24	PF13412.1	gi|146303580|ref|YP_001190896.1|	-	1.1e-28	98.3	0.1	5.1e-16	57.8	0.0	2.3	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|146303580|ref|YP_001190896.1|	-	8.7e-20	69.9	0.0	8.2e-11	41.2	0.0	2.3	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303580|ref|YP_001190896.1|	-	5.5e-13	48.5	0.0	1.7e-05	24.4	0.0	2.3	2	0	0	2	2	2	2	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|146303580|ref|YP_001190896.1|	-	1.4e-12	47.0	0.0	2.5e-05	23.8	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_5	PF01022.15	gi|146303580|ref|YP_001190896.1|	-	6.2e-11	41.7	0.0	0.00012	21.7	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|146303580|ref|YP_001190896.1|	-	2.3e-10	40.0	0.0	0.00033	20.2	0.0	2.5	2	0	0	2	2	2	2	MarR	family
HTH_11	PF08279.7	gi|146303580|ref|YP_001190896.1|	-	3.9e-09	36.0	0.0	0.0027	17.2	0.0	2.9	3	0	0	3	3	3	2	HTH	domain
TrmB	PF01978.14	gi|146303580|ref|YP_001190896.1|	-	8.1e-08	31.8	0.1	3.1e-05	23.5	0.0	2.4	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Fe_dep_repress	PF01325.14	gi|146303580|ref|YP_001190896.1|	-	1.2e-07	31.5	0.1	0.011	15.6	0.0	2.6	3	0	0	3	3	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_23	PF13384.1	gi|146303580|ref|YP_001190896.1|	-	1.2e-07	31.1	0.0	0.016	14.8	0.0	2.4	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_27	PF13463.1	gi|146303580|ref|YP_001190896.1|	-	1.5e-06	28.4	0.0	0.065	13.5	0.0	2.5	2	0	0	2	2	2	2	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|146303580|ref|YP_001190896.1|	-	3.7e-06	26.8	0.0	0.0021	18.0	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|146303580|ref|YP_001190896.1|	-	1.3e-05	25.1	0.0	0.16	11.9	0.0	2.8	3	0	0	3	3	2	2	Winged	helix	DNA-binding	domain
HTH_10	PF04967.7	gi|146303580|ref|YP_001190896.1|	-	1.6e-05	24.3	0.0	0.18	11.3	0.0	2.5	2	0	0	2	2	2	2	HTH	DNA	binding	domain
HTH_8	PF02954.14	gi|146303580|ref|YP_001190896.1|	-	6.3e-05	22.4	0.0	0.22	11.0	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	Fis	family
HTH_30	PF13556.1	gi|146303580|ref|YP_001190896.1|	-	8.7e-05	22.0	0.0	0.075	12.6	0.0	2.4	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
Rrf2	PF02082.15	gi|146303580|ref|YP_001190896.1|	-	0.00021	21.3	0.0	0.44	10.6	0.0	2.4	2	0	0	2	2	2	2	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|146303580|ref|YP_001190896.1|	-	0.00023	20.6	0.1	0.29	10.6	0.0	2.7	3	0	0	3	3	2	1	TFIIE	alpha	subunit
Sigma70_r4_2	PF08281.7	gi|146303580|ref|YP_001190896.1|	-	0.00031	20.1	0.1	0.033	13.6	0.0	2.4	2	0	0	2	2	2	1	Sigma-70,	region	4
EAP30	PF04157.11	gi|146303580|ref|YP_001190896.1|	-	0.00065	18.9	0.0	0.0076	15.4	0.0	2.0	2	0	0	2	2	2	1	EAP30/Vps36	family
FeoC	PF09012.5	gi|146303580|ref|YP_001190896.1|	-	0.00066	19.3	0.0	0.02	14.5	0.0	2.4	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
RepL	PF05732.6	gi|146303580|ref|YP_001190896.1|	-	0.0013	18.0	0.0	1.2	8.3	0.0	2.4	2	0	0	2	2	2	2	Firmicute	plasmid	replication	protein	(RepL)
HxlR	PF01638.12	gi|146303580|ref|YP_001190896.1|	-	0.0016	18.0	0.1	1.3	8.6	0.0	2.7	3	0	0	3	3	2	1	HxlR-like	helix-turn-helix
GntR	PF00392.16	gi|146303580|ref|YP_001190896.1|	-	0.0024	17.2	0.0	0.48	9.8	0.0	2.8	3	0	0	3	3	2	1	Bacterial	regulatory	proteins,	gntR	family
LexA_DNA_bind	PF01726.11	gi|146303580|ref|YP_001190896.1|	-	0.003	17.0	0.0	0.027	14.0	0.0	2.2	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|146303580|ref|YP_001190896.1|	-	0.003	17.0	0.0	0.34	10.4	0.0	2.7	3	0	0	3	3	2	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|146303580|ref|YP_001190896.1|	-	0.0035	17.0	0.0	2.1	8.1	0.0	2.4	2	0	0	2	2	2	1	Crp-like	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|146303580|ref|YP_001190896.1|	-	0.0045	16.2	0.0	0.18	11.1	0.0	2.3	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_1	PF00126.22	gi|146303580|ref|YP_001190896.1|	-	0.0055	16.4	0.0	1.7	8.4	0.0	2.4	2	0	0	2	2	2	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
TetR_N	PF00440.18	gi|146303580|ref|YP_001190896.1|	-	0.0066	16.0	0.0	0.15	11.6	0.0	2.3	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
HTH_3	PF01381.17	gi|146303580|ref|YP_001190896.1|	-	0.013	15.3	0.1	2.7	7.9	0.0	2.9	3	0	0	3	3	3	0	Helix-turn-helix
CENP-B_N	PF04218.8	gi|146303580|ref|YP_001190896.1|	-	0.015	14.6	0.2	0.67	9.4	0.0	2.8	3	0	0	3	3	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_IclR	PF09339.5	gi|146303580|ref|YP_001190896.1|	-	0.019	14.5	0.0	0.39	10.3	0.0	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_Tnp_Tc3_2	PF01498.13	gi|146303580|ref|YP_001190896.1|	-	0.025	14.6	0.0	0.15	12.0	0.0	2.1	2	0	0	2	2	2	0	Transposase
IF2_N	PF04760.10	gi|146303580|ref|YP_001190896.1|	-	0.03	13.9	0.0	0.18	11.4	0.0	2.1	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
HTH_9	PF08221.6	gi|146303580|ref|YP_001190896.1|	-	0.036	13.9	0.1	14	5.6	0.0	2.6	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_38	PF13936.1	gi|146303580|ref|YP_001190896.1|	-	0.048	13.2	0.0	5.1	6.7	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
Put_DNA-bind_N	PF06971.8	gi|146303580|ref|YP_001190896.1|	-	0.05	13.3	0.0	1.8	8.4	0.1	2.9	3	0	0	3	3	2	0	Putative	DNA-binding	protein	N-terminus
HTH_Tnp_IS630	PF01710.11	gi|146303580|ref|YP_001190896.1|	-	0.075	12.7	0.0	5.8	6.6	0.0	2.3	2	0	0	2	2	2	0	Transposase
HTH_39	PF14090.1	gi|146303580|ref|YP_001190896.1|	-	0.086	12.3	0.0	4.7	6.7	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|146303580|ref|YP_001190896.1|	-	0.096	12.8	0.0	2.6	8.2	0.0	2.3	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|146303580|ref|YP_001190896.1|	-	0.11	12.2	0.0	12	5.7	0.0	2.4	2	0	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
Sigma70_r3	PF04539.11	gi|146303580|ref|YP_001190896.1|	-	0.11	12.3	0.0	0.49	10.3	0.0	2.0	2	0	0	2	2	2	0	Sigma-70	region	3
B-block_TFIIIC	PF04182.7	gi|146303580|ref|YP_001190896.1|	-	0.11	12.2	0.0	6.2	6.7	0.0	2.4	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
DDE_1	PF03184.14	gi|146303580|ref|YP_001190896.1|	-	0.12	11.5	0.0	0.18	10.9	0.0	1.2	1	0	0	1	1	1	0	DDE	superfamily	endonuclease
GerE	PF00196.14	gi|146303580|ref|YP_001190896.1|	-	0.15	11.4	0.0	0.42	9.9	0.0	1.7	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	luxR	family
Thioredoxin_8	PF13905.1	gi|146303581|ref|YP_001190897.1|	-	0.045	13.8	0.0	0.057	13.5	0.0	1.1	1	0	0	1	1	1	0	Thioredoxin-like
MA-Mit	PF09245.5	gi|146303581|ref|YP_001190897.1|	-	0.12	11.6	0.4	1.1	8.4	0.1	1.9	1	1	1	2	2	2	0	Mycoplasma	arthritidis-derived	mitogen
SbmA_BacA	PF05992.7	gi|146303582|ref|YP_001190898.1|	-	0.0041	16.3	0.0	0.0041	16.3	0.0	1.0	1	0	0	1	1	1	1	SbmA/BacA-like	family
DUF929	PF06053.6	gi|146303583|ref|YP_001190899.1|	-	1.5e-55	187.9	9.6	2.5e-55	187.2	6.7	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
Thioredoxin_7	PF13899.1	gi|146303583|ref|YP_001190899.1|	-	0.00019	21.4	0.0	0.00045	20.1	0.0	1.6	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|146303583|ref|YP_001190899.1|	-	0.00022	20.8	0.0	0.00049	19.7	0.0	1.5	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146303583|ref|YP_001190899.1|	-	0.001	18.6	0.0	0.0021	17.6	0.0	1.5	1	0	0	1	1	1	1	Redoxin
Thioredoxin_2	PF13098.1	gi|146303583|ref|YP_001190899.1|	-	0.073	13.2	0.1	0.15	12.2	0.1	1.7	1	1	0	1	1	1	0	Thioredoxin-like	domain
zf-ribbon_3	PF13248.1	gi|146303583|ref|YP_001190899.1|	-	0.11	11.7	0.1	0.18	11.0	0.1	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Fer4_10	PF13237.1	gi|146303585|ref|YP_001190901.1|	-	1.2e-06	28.1	5.2	2.1e-06	27.4	3.6	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303585|ref|YP_001190901.1|	-	1.2e-05	25.5	7.0	2.3e-05	24.5	4.9	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303585|ref|YP_001190901.1|	-	0.00032	20.9	9.8	0.01	16.1	7.4	2.4	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303585|ref|YP_001190901.1|	-	0.00038	20.2	9.1	0.066	13.1	2.3	2.7	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146303585|ref|YP_001190901.1|	-	0.00086	19.2	5.9	0.0017	18.3	2.5	2.3	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
DUF2626	PF11117.3	gi|146303585|ref|YP_001190901.1|	-	0.0012	19.1	3.2	0.0012	19.1	2.2	3.4	3	1	1	4	4	3	1	Protein	of	unknown	function	(DUF2626)
Fer4_6	PF12837.2	gi|146303585|ref|YP_001190901.1|	-	0.0061	16.3	9.8	0.38	10.7	1.5	2.5	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303585|ref|YP_001190901.1|	-	0.03	14.1	4.9	0.077	12.8	3.4	1.7	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_11	PF13247.1	gi|146303585|ref|YP_001190901.1|	-	0.049	13.5	2.0	0.091	12.6	1.4	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303585|ref|YP_001190901.1|	-	0.051	13.1	10.6	0.065	12.8	0.5	2.9	2	1	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303585|ref|YP_001190901.1|	-	0.054	14.2	4.2	2.7	8.8	0.1	2.4	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_20	PF14691.1	gi|146303585|ref|YP_001190901.1|	-	0.42	10.2	5.3	0.21	11.2	1.7	1.8	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_17	PF13534.1	gi|146303585|ref|YP_001190901.1|	-	0.6	10.5	11.8	0.37	11.1	4.5	2.5	2	1	0	2	2	1	0	4Fe-4S	dicluster	domain
Cytochrome-c551	PF10643.4	gi|146303585|ref|YP_001190901.1|	-	0.68	9.1	6.1	1.6	8.0	4.2	1.6	1	0	0	1	1	1	0	Photosystem	P840	reaction-centre	cytochrome	c-551
Fer4_4	PF12800.2	gi|146303585|ref|YP_001190901.1|	-	0.81	10.1	8.1	0.94	9.9	1.4	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146303585|ref|YP_001190901.1|	-	1.3	9.7	14.2	0.21	12.2	1.4	2.8	2	0	0	2	2	2	0	4Fe-4S	binding	domain
VKOR	PF07884.9	gi|146303586|ref|YP_001190902.1|	-	1.1e-19	70.7	11.2	1.7e-19	70.0	7.7	1.3	1	1	0	1	1	1	1	Vitamin	K	epoxide	reductase	family
PQQ_2	PF13360.1	gi|146303587|ref|YP_001190903.1|	-	1.6e-41	142.3	1.8	2.9e-15	56.3	0.0	3.2	1	1	2	3	3	3	3	PQQ-like	domain
PQQ	PF01011.16	gi|146303587|ref|YP_001190903.1|	-	1.3e-24	84.4	6.1	0.008	15.6	0.0	7.6	7	0	0	7	7	7	7	PQQ	enzyme	repeat
PQQ_3	PF13570.1	gi|146303587|ref|YP_001190903.1|	-	4.9e-07	29.8	24.0	0.03	14.5	0.2	8.4	8	1	0	8	8	8	3	PQQ-like	domain
SMC_N	PF02463.14	gi|146303588|ref|YP_001190904.1|	-	7e-12	45.0	0.3	2.2e-06	27.0	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_21	PF13304.1	gi|146303588|ref|YP_001190904.1|	-	7.6e-12	45.7	2.5	3.7e-07	30.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
ABC_tran	PF00005.22	gi|146303588|ref|YP_001190904.1|	-	7.7e-11	42.4	1.0	5.9e-08	33.1	0.7	2.3	1	1	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.1	gi|146303588|ref|YP_001190904.1|	-	4.2e-08	33.7	0.0	6.9e-08	33.0	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
AAA_13	PF13166.1	gi|146303588|ref|YP_001190904.1|	-	6.1e-07	28.3	0.2	0.001	17.6	0.0	2.3	1	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303588|ref|YP_001190904.1|	-	9.4e-07	28.2	0.0	0.0016	17.5	0.0	2.2	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|146303588|ref|YP_001190904.1|	-	4.8e-06	26.6	0.0	7.5e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|146303588|ref|YP_001190904.1|	-	9.8e-05	22.1	0.0	0.0025	17.7	0.0	2.2	1	1	0	1	1	1	1	Putative	exonuclease	SbcCD,	C	subunit
NACHT	PF05729.7	gi|146303588|ref|YP_001190904.1|	-	0.00011	21.8	0.1	0.00021	21.0	0.1	1.8	1	1	0	1	1	1	1	NACHT	domain
Arch_ATPase	PF01637.13	gi|146303588|ref|YP_001190904.1|	-	0.00014	21.6	0.0	0.00024	20.8	0.0	1.4	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_29	PF13555.1	gi|146303588|ref|YP_001190904.1|	-	0.00033	20.1	0.1	0.00071	19.0	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_22	PF13401.1	gi|146303588|ref|YP_001190904.1|	-	0.0018	18.4	0.0	0.0028	17.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|146303588|ref|YP_001190904.1|	-	0.0049	16.3	0.1	0.0082	15.6	0.1	1.3	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
MobB	PF03205.9	gi|146303588|ref|YP_001190904.1|	-	0.0074	16.0	0.0	0.016	14.9	0.0	1.7	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Zeta_toxin	PF06414.7	gi|146303588|ref|YP_001190904.1|	-	0.0075	15.3	0.0	0.015	14.4	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA	PF00004.24	gi|146303588|ref|YP_001190904.1|	-	0.0086	16.2	0.0	0.016	15.4	0.0	1.5	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
ABC_ATPase	PF09818.4	gi|146303588|ref|YP_001190904.1|	-	0.01	14.4	0.1	0.071	11.6	0.0	2.0	2	0	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
DUF258	PF03193.11	gi|146303588|ref|YP_001190904.1|	-	0.011	14.9	0.1	0.014	14.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
cobW	PF02492.14	gi|146303588|ref|YP_001190904.1|	-	0.011	15.1	0.5	0.027	13.9	0.1	1.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
NTPase_1	PF03266.10	gi|146303588|ref|YP_001190904.1|	-	0.014	15.1	0.3	0.056	13.1	0.2	2.1	1	1	0	1	1	1	0	NTPase
Miro	PF08477.8	gi|146303588|ref|YP_001190904.1|	-	0.016	15.7	0.0	0.026	14.9	0.0	1.7	1	1	0	1	1	1	0	Miro-like	protein
AAA_30	PF13604.1	gi|146303588|ref|YP_001190904.1|	-	0.021	14.4	0.0	0.052	13.1	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
AAA_33	PF13671.1	gi|146303588|ref|YP_001190904.1|	-	0.022	14.6	0.0	0.055	13.3	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|146303588|ref|YP_001190904.1|	-	0.026	13.9	0.1	0.045	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA-like	domain
UPF0079	PF02367.12	gi|146303588|ref|YP_001190904.1|	-	0.028	14.0	0.0	0.065	12.8	0.0	1.6	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
DUF3584	PF12128.3	gi|146303588|ref|YP_001190904.1|	-	0.06	10.6	0.2	0.089	10.1	0.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
DUF87	PF01935.12	gi|146303588|ref|YP_001190904.1|	-	0.064	13.0	0.7	0.18	11.6	0.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
AAA_14	PF13173.1	gi|146303588|ref|YP_001190904.1|	-	0.12	12.2	0.1	0.26	11.1	0.0	1.9	1	1	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|146303588|ref|YP_001190904.1|	-	0.14	12.1	0.5	0.39	10.6	0.4	1.8	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_19	PF13245.1	gi|146303588|ref|YP_001190904.1|	-	0.15	11.8	0.0	0.29	10.9	0.0	1.5	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|146303588|ref|YP_001190904.1|	-	0.23	11.7	0.8	2.1	8.6	0.6	2.1	1	1	0	1	1	1	0	AAA	domain
FecCD	PF01032.13	gi|146303589|ref|YP_001190905.1|	-	2.4e-64	217.1	36.8	2.8e-64	216.9	25.5	1.0	1	0	0	1	1	1	1	FecCD	transport	family
ABC-3	PF00950.12	gi|146303589|ref|YP_001190905.1|	-	5.5e-05	22.5	25.9	8.2e-05	22.0	17.9	1.3	1	0	0	1	1	1	1	ABC	3	transport	family
DUF4396	PF14342.1	gi|146303589|ref|YP_001190905.1|	-	0.36	10.9	11.0	1.4	9.0	4.7	3.4	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4396)
UPF0220	PF05255.6	gi|146303589|ref|YP_001190905.1|	-	0.45	9.7	11.5	0.02	14.1	3.5	2.2	2	1	0	2	2	2	0	Uncharacterised	protein	family	(UPF0220)
Peripla_BP_2	PF01497.13	gi|146303590|ref|YP_001190906.1|	-	6.5e-20	71.2	0.0	7.7e-20	71.0	0.0	1.1	1	0	0	1	1	1	1	Periplasmic	binding	protein
Med21	PF11221.3	gi|146303590|ref|YP_001190906.1|	-	0.14	12.1	0.0	0.26	11.2	0.0	1.3	1	0	0	1	1	1	0	Subunit	21	of	Mediator	complex
TrkA_N	PF02254.13	gi|146303591|ref|YP_001190907.1|	-	2.5e-19	69.3	0.1	4.5e-19	68.5	0.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
TrkA_C	PF02080.16	gi|146303591|ref|YP_001190907.1|	-	0.00016	21.1	0.3	0.0041	16.6	0.0	2.5	2	1	0	2	2	2	1	TrkA-C	domain
Ion_trans_2	PF07885.11	gi|146303591|ref|YP_001190907.1|	-	0.01	15.5	5.4	0.021	14.5	3.8	1.5	1	0	0	1	1	1	0	Ion	channel
AlaDh_PNT_C	PF01262.16	gi|146303591|ref|YP_001190907.1|	-	0.025	14.1	0.2	0.091	12.3	0.0	1.9	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
DUF2122	PF09895.4	gi|146303591|ref|YP_001190907.1|	-	0.075	13.2	0.1	0.18	12.0	0.0	1.7	1	0	0	1	1	1	0	RecB-family	nuclease	(DUF2122)
Pox_RNA_pol	PF03293.9	gi|146303591|ref|YP_001190907.1|	-	0.089	12.2	0.0	0.16	11.5	0.0	1.3	1	0	0	1	1	1	0	Poxvirus	DNA-directed	RNA	polymerase,	18	kD	subunit
OsmC	PF02566.14	gi|146303592|ref|YP_001190908.1|	-	7.2e-08	32.5	0.0	1e-07	32.0	0.0	1.1	1	0	0	1	1	1	1	OsmC-like	protein
TrmB	PF01978.14	gi|146303593|ref|YP_001190909.1|	-	0.00026	20.6	0.0	0.00039	20.0	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146303593|ref|YP_001190909.1|	-	0.0024	17.2	0.5	0.0046	16.3	0.1	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_IclR	PF09339.5	gi|146303593|ref|YP_001190909.1|	-	0.0087	15.6	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.1	gi|146303593|ref|YP_001190909.1|	-	0.012	15.9	0.0	0.021	15.1	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_Crp_2	PF13545.1	gi|146303593|ref|YP_001190909.1|	-	0.022	14.5	0.0	0.054	13.2	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_45	PF14947.1	gi|146303593|ref|YP_001190909.1|	-	0.06	13.1	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_psq	PF05225.11	gi|146303593|ref|YP_001190909.1|	-	0.09	12.3	0.1	0.21	11.1	0.0	1.6	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
BMC	PF00936.14	gi|146303594|ref|YP_001190910.1|	-	0.057	13.1	0.0	0.22	11.2	0.0	1.9	2	0	0	2	2	2	0	BMC	domain
NrfD	PF03916.9	gi|146303595|ref|YP_001190911.1|	-	2.1e-08	33.9	31.6	7.2e-08	32.1	18.3	2.2	2	0	0	2	2	2	2	Polysulphide	reductase,	NrfD
TPR_11	PF13414.1	gi|146303596|ref|YP_001190912.1|	-	2.5e-28	97.4	3.7	2.3e-08	33.5	0.6	5.0	4	1	1	5	5	5	3	TPR	repeat
TPR_16	PF13432.1	gi|146303596|ref|YP_001190912.1|	-	1.7e-24	85.8	1.7	4.2e-07	30.4	0.2	4.2	4	0	0	4	4	4	3	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|146303596|ref|YP_001190912.1|	-	4.4e-24	84.5	1.8	1.5e-05	25.2	0.0	4.3	3	1	1	4	4	4	4	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|146303596|ref|YP_001190912.1|	-	1.2e-18	65.7	0.4	0.098	12.9	0.1	7.5	8	0	0	8	8	7	5	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|146303596|ref|YP_001190912.1|	-	3e-18	64.2	5.8	0.0097	15.7	0.0	7.9	8	1	0	8	8	8	4	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|146303596|ref|YP_001190912.1|	-	2.5e-14	51.9	11.6	0.034	13.9	0.2	7.0	7	1	1	8	8	8	4	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|146303596|ref|YP_001190912.1|	-	2.7e-14	52.3	3.5	0.028	15.0	0.1	6.2	2	1	5	7	7	7	3	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|146303596|ref|YP_001190912.1|	-	6.6e-14	51.8	3.5	0.0049	16.9	0.0	4.1	1	1	2	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_1	PF00515.23	gi|146303596|ref|YP_001190912.1|	-	4.4e-13	48.2	9.7	0.036	13.6	0.1	7.8	8	1	0	8	8	8	4	Tetratricopeptide	repeat
TPR_9	PF13371.1	gi|146303596|ref|YP_001190912.1|	-	1.8e-12	46.9	1.1	0.0001	22.0	0.0	4.4	3	2	1	4	4	4	3	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|146303596|ref|YP_001190912.1|	-	3.3e-12	46.1	9.2	0.0065	16.3	0.0	5.4	1	1	4	5	5	5	5	Tetratricopeptide	repeat
NARP1	PF12569.3	gi|146303596|ref|YP_001190912.1|	-	3.2e-09	36.1	6.1	0.0021	16.8	0.0	3.8	2	1	2	4	4	4	3	NMDA	receptor-regulated	protein	1
TPR_4	PF07721.9	gi|146303596|ref|YP_001190912.1|	-	1.4e-08	34.3	0.1	0.25	11.8	0.0	4.6	4	0	0	4	4	4	2	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|146303596|ref|YP_001190912.1|	-	5.4e-08	32.0	0.2	1.5	8.8	0.0	5.3	5	0	0	5	5	5	2	Tetratricopeptide	repeat
TPR_15	PF13429.1	gi|146303596|ref|YP_001190912.1|	-	1.4e-05	24.3	1.1	0.13	11.2	0.0	3.1	1	1	2	3	3	3	3	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|146303596|ref|YP_001190912.1|	-	4.7e-05	23.5	5.8	3.5	8.2	0.0	6.3	7	0	0	7	7	7	1	Tetratricopeptide	repeat
TPR_5	PF12688.2	gi|146303596|ref|YP_001190912.1|	-	0.00017	21.6	0.1	0.0013	18.7	0.0	2.4	1	1	1	2	2	2	1	Tetratrico	peptide	repeat
ChAPs	PF09295.5	gi|146303596|ref|YP_001190912.1|	-	0.00028	19.8	0.1	0.016	14.0	0.0	2.0	1	1	1	2	2	2	1	ChAPs	(Chs5p-Arf1p-binding	proteins)
DUF3808	PF10300.4	gi|146303596|ref|YP_001190912.1|	-	0.00058	18.5	0.5	0.042	12.3	0.0	2.6	1	1	1	3	3	3	1	Protein	of	unknown	function	(DUF3808)
TPR_21	PF09976.4	gi|146303596|ref|YP_001190912.1|	-	0.00079	19.3	2.6	2.1	8.2	0.1	4.5	2	1	2	4	4	4	1	Tetratricopeptide	repeat
Fis1_TPR_C	PF14853.1	gi|146303596|ref|YP_001190912.1|	-	0.00086	19.1	2.8	0.65	9.9	0.0	4.4	4	0	0	4	4	4	1	Fis1	C-terminal	tetratricopeptide	repeat
TPR_20	PF14561.1	gi|146303596|ref|YP_001190912.1|	-	0.0033	17.5	2.2	12	6.0	0.1	4.3	2	2	1	4	4	4	0	Tetratricopeptide	repeat
TPR_10	PF13374.1	gi|146303596|ref|YP_001190912.1|	-	0.0043	16.9	5.7	1.4	8.9	0.2	5.0	5	0	0	5	5	5	1	Tetratricopeptide	repeat
YfdX	PF10938.3	gi|146303596|ref|YP_001190912.1|	-	0.015	14.9	2.8	5	6.7	0.0	3.5	3	3	0	3	3	3	0	YfdX	protein
Coatomer_E	PF04733.9	gi|146303596|ref|YP_001190912.1|	-	0.03	13.5	0.1	0.12	11.5	0.0	2.0	1	1	1	2	2	2	0	Coatomer	epsilon	subunit
PPR	PF01535.15	gi|146303596|ref|YP_001190912.1|	-	0.041	13.8	4.7	11	6.1	0.0	5.1	6	1	0	6	6	5	0	PPR	repeat
PPR_1	PF12854.2	gi|146303596|ref|YP_001190912.1|	-	0.06	12.8	3.3	4.1	6.9	0.1	3.9	3	1	1	4	4	4	0	PPR	repeat
Molybdopterin	PF00384.17	gi|146303597|ref|YP_001190913.1|	-	1.3e-05	24.1	0.0	0.0027	16.5	0.0	3.2	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase
TAT_signal	PF10518.4	gi|146303597|ref|YP_001190913.1|	-	0.0004	20.1	0.9	0.0013	18.5	0.6	1.9	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Molybdop_Fe4S4	PF04879.11	gi|146303597|ref|YP_001190913.1|	-	0.096	12.5	0.1	0.22	11.3	0.1	1.6	1	0	0	1	1	1	0	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer4_11	PF13247.1	gi|146303598|ref|YP_001190914.1|	-	2.5e-23	81.8	7.8	2.5e-23	81.8	5.4	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303598|ref|YP_001190914.1|	-	3.2e-13	49.7	19.9	5.8e-08	32.8	4.4	2.9	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303598|ref|YP_001190914.1|	-	1.2e-12	47.9	14.8	7.4e-07	29.4	1.7	2.7	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303598|ref|YP_001190914.1|	-	8.7e-09	35.0	16.2	0.00042	20.0	3.3	2.8	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303598|ref|YP_001190914.1|	-	8.9e-05	22.1	26.4	0.042	13.7	0.3	4.6	5	0	0	5	5	4	3	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146303598|ref|YP_001190914.1|	-	0.0001	22.3	27.8	0.038	14.3	1.3	4.7	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146303598|ref|YP_001190914.1|	-	0.00018	21.4	17.2	0.00049	20.0	3.0	3.1	2	2	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146303598|ref|YP_001190914.1|	-	0.00041	20.7	9.7	0.66	10.4	0.1	3.6	3	0	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146303598|ref|YP_001190914.1|	-	0.0013	19.1	33.8	0.053	14.1	4.9	4.3	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146303598|ref|YP_001190914.1|	-	0.0039	16.7	26.1	0.011	15.3	0.6	4.4	4	0	0	4	4	4	3	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303598|ref|YP_001190914.1|	-	0.026	14.3	19.2	0.44	10.4	0.2	3.7	3	1	1	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303598|ref|YP_001190914.1|	-	0.051	13.9	19.4	0.58	10.5	0.2	3.7	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303598|ref|YP_001190914.1|	-	3.7	7.5	27.7	0.34	10.8	2.6	5.0	5	0	0	5	5	5	0	4Fe-4S	binding	domain
Fer4_20	PF14691.1	gi|146303598|ref|YP_001190914.1|	-	6.3	6.4	16.6	0.24	11.0	1.2	3.3	2	1	2	4	4	4	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_15	PF13459.1	gi|146303598|ref|YP_001190914.1|	-	6.9	7.3	17.4	0.33	11.5	1.3	3.3	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Nitrate_red_del	PF02613.10	gi|146303599|ref|YP_001190915.1|	-	2.8e-11	43.3	0.0	3.9e-11	42.9	0.0	1.2	1	0	0	1	1	1	1	Nitrate	reductase	delta	subunit
Fer4_7	PF12838.2	gi|146303600|ref|YP_001190916.1|	-	8.4e-07	29.2	20.1	0.0038	17.5	0.7	3.6	3	1	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303600|ref|YP_001190916.1|	-	2.4e-06	27.6	19.0	0.022	15.0	3.8	3.8	3	2	1	4	4	4	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303600|ref|YP_001190916.1|	-	1e-05	25.2	22.9	0.0067	16.2	1.1	3.6	2	1	1	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303600|ref|YP_001190916.1|	-	1.4e-05	24.6	29.0	0.00062	19.5	3.3	4.4	5	0	0	5	5	4	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146303600|ref|YP_001190916.1|	-	2e-05	24.0	33.7	3.5e-05	23.2	2.9	4.8	6	0	0	6	6	6	3	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|146303600|ref|YP_001190916.1|	-	2e-05	24.8	10.8	0.18	12.1	0.1	3.9	3	1	0	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|146303600|ref|YP_001190916.1|	-	2e-05	25.0	10.3	0.067	13.7	1.1	4.6	4	0	0	4	4	4	1	4Fe-4S	single	cluster	domain
Fer4_21	PF14697.1	gi|146303600|ref|YP_001190916.1|	-	8.2e-05	22.3	6.0	8.2e-05	22.3	4.2	3.0	2	1	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303600|ref|YP_001190916.1|	-	0.00041	20.1	2.0	0.00041	20.1	1.4	4.9	5	0	0	5	5	5	3	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146303600|ref|YP_001190916.1|	-	0.00083	19.3	16.6	0.16	12.0	6.4	3.6	2	1	2	4	4	4	4	4Fe-4S	dicluster	domain
Fer4_19	PF06902.6	gi|146303600|ref|YP_001190916.1|	-	0.054	13.3	4.9	3.8	7.3	0.1	3.5	3	0	0	3	3	3	0	Divergent	4Fe-4S	mono-cluster
Fer4_18	PF13746.1	gi|146303600|ref|YP_001190916.1|	-	0.067	13.6	14.0	0.41	11.1	0.4	3.5	3	1	0	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146303600|ref|YP_001190916.1|	-	0.3	11.5	28.4	0.07	13.4	2.6	4.8	5	0	0	5	5	4	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|146303600|ref|YP_001190916.1|	-	5.8	7.3	18.2	5.3	7.5	1.5	4.4	4	0	0	4	4	4	0	4Fe-4S	single	cluster	domain
HAD_2	PF13419.1	gi|146303601|ref|YP_001190917.1|	-	6.4e-06	26.4	0.0	7.7e-06	26.2	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
DUF2299	PF10061.4	gi|146303602|ref|YP_001190918.1|	-	8.7e-44	148.3	0.0	9.6e-44	148.1	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
MS_channel	PF00924.13	gi|146303603|ref|YP_001190919.1|	-	8.1e-30	103.6	0.1	1.9e-29	102.4	0.1	1.6	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DUF1098	PF06497.6	gi|146303604|ref|YP_001190920.1|	-	0.044	13.8	0.1	0.1	12.6	0.1	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1098)
CompInhib_SCIN	PF11546.3	gi|146303604|ref|YP_001190920.1|	-	0.079	12.8	0.1	1.2	8.9	0.0	2.2	2	0	0	2	2	2	0	Staphylococcal	complement	inhibitor	SCIN
Band_7	PF01145.20	gi|146303605|ref|YP_001190921.1|	-	4.7e-24	85.2	0.0	8.9e-24	84.3	0.0	1.4	1	1	0	1	1	1	1	SPFH	domain	/	Band	7	family
Band_7_1	PF13421.1	gi|146303605|ref|YP_001190921.1|	-	6.3e-08	32.3	0.3	2.5e-07	30.4	0.2	1.8	1	1	0	1	1	1	1	SPFH	domain-Band	7	family
Chs3p	PF12271.3	gi|146303606|ref|YP_001190922.1|	-	0.37	9.7	6.1	0.46	9.3	4.2	1.0	1	0	0	1	1	1	0	Chitin	synthase	III	catalytic	subunit
DUF1385	PF07136.6	gi|146303606|ref|YP_001190922.1|	-	0.62	9.0	7.5	3.1	6.8	1.5	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1385)
DUF4149	PF13664.1	gi|146303606|ref|YP_001190922.1|	-	0.87	9.6	7.9	1.4	9.0	5.2	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4149)
SoxE	PF06525.6	gi|146303609|ref|YP_001190925.1|	-	7.4e-85	283.1	10.7	8.8e-85	282.9	7.4	1.1	1	0	0	1	1	1	1	Sulfocyanin	(SoxE)
DUF2154	PF09922.4	gi|146303609|ref|YP_001190925.1|	-	0.056	13.1	0.3	7.9	6.2	0.0	2.3	2	0	0	2	2	2	0	Cell	wall-active	antibiotics	response	protein	(DUF2154)
RE_XamI	PF09572.5	gi|146303609|ref|YP_001190925.1|	-	0.098	12.0	0.3	0.14	11.6	0.2	1.1	1	0	0	1	1	1	0	XamI	restriction	endonuclease
DUF2427	PF10348.4	gi|146303609|ref|YP_001190925.1|	-	0.14	11.7	1.6	0.25	10.9	0.8	1.7	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF2427)
DUF1312	PF07009.6	gi|146303609|ref|YP_001190925.1|	-	0.27	11.0	1.5	2.9	7.7	1.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1312)
Aminotran_5	PF00266.14	gi|146303611|ref|YP_001190927.1|	-	1.4e-35	122.7	0.0	1.7e-35	122.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-V
Ribul_P_3_epim	PF00834.14	gi|146303611|ref|YP_001190927.1|	-	0.11	11.5	0.1	0.34	9.9	0.0	1.8	2	0	0	2	2	2	0	Ribulose-phosphate	3	epimerase	family
OKR_DC_1	PF01276.15	gi|146303611|ref|YP_001190927.1|	-	0.17	10.4	0.0	0.6	8.6	0.0	1.8	1	1	0	1	1	1	0	Orn/Lys/Arg	decarboxylase,	major	domain
Aconitase_C	PF00694.14	gi|146303612|ref|YP_001190928.1|	-	8.2e-23	80.9	0.0	1.1e-22	80.5	0.0	1.3	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Aconitase_2_N	PF06434.8	gi|146303612|ref|YP_001190928.1|	-	9.6e-05	21.8	2.4	0.0068	15.8	1.7	2.1	1	1	0	1	1	1	1	Aconitate	hydratase	2	N-terminus
Sipho_tail	PF05709.6	gi|146303612|ref|YP_001190928.1|	-	0.018	14.1	0.0	0.019	14.1	0.0	1.1	1	0	0	1	1	1	0	Phage	tail	protein
PEP-utilizers	PF00391.18	gi|146303612|ref|YP_001190928.1|	-	0.082	12.4	1.0	0.42	10.2	0.7	2.3	1	1	0	1	1	1	0	PEP-utilising	enzyme,	mobile	domain
Lon_C	PF05362.8	gi|146303612|ref|YP_001190928.1|	-	0.094	12.0	1.9	1.1	8.5	0.2	2.1	2	0	0	2	2	2	0	Lon	protease	(S16)	C-terminal	proteolytic	domain
Aconitase	PF00330.15	gi|146303613|ref|YP_001190929.1|	-	9.8e-59	199.0	3.5	6.8e-38	130.3	0.3	2.3	1	1	1	2	2	2	2	Aconitase	family	(aconitate	hydratase)
DUF521	PF04412.8	gi|146303613|ref|YP_001190929.1|	-	0.0061	15.1	0.0	0.01	14.4	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF521)
UPF0547	PF10571.4	gi|146303614|ref|YP_001190930.1|	-	6e-07	29.0	1.3	8.5e-07	28.5	0.9	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|146303614|ref|YP_001190930.1|	-	0.00019	20.5	13.1	0.0027	16.8	4.0	2.0	1	1	1	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146303614|ref|YP_001190930.1|	-	0.00039	19.6	1.5	0.34	10.2	0.1	2.1	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-TFIIB	PF13453.1	gi|146303614|ref|YP_001190930.1|	-	0.0026	16.8	0.3	0.0032	16.6	0.2	1.2	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DZR	PF12773.2	gi|146303614|ref|YP_001190930.1|	-	0.003	17.3	2.2	0.0075	16.0	1.6	1.6	1	1	0	1	1	1	1	Double	zinc	ribbon
DUF2387	PF09526.5	gi|146303614|ref|YP_001190930.1|	-	0.0042	16.9	0.2	0.0043	16.9	0.1	1.1	1	0	0	1	1	1	1	Probable	metal-binding	protein	(DUF2387)
eIF-5_eIF-2B	PF01873.12	gi|146303614|ref|YP_001190930.1|	-	0.0044	16.6	1.2	0.0054	16.3	0.8	1.1	1	0	0	1	1	1	1	Domain	found	in	IF2B/IF5
RNA_POL_M_15KD	PF02150.11	gi|146303614|ref|YP_001190930.1|	-	0.0061	16.2	0.7	0.0085	15.7	0.5	1.3	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
DUF2072	PF09845.4	gi|146303614|ref|YP_001190930.1|	-	0.0083	16.0	1.0	0.01	15.7	0.7	1.2	1	0	0	1	1	1	1	Zn-ribbon	containing	protein	(DUF2072)
HypA	PF01155.14	gi|146303614|ref|YP_001190930.1|	-	0.0096	15.6	0.2	0.011	15.4	0.1	1.1	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-C4_Topoisom	PF01396.14	gi|146303614|ref|YP_001190930.1|	-	0.012	15.0	1.5	2.1	7.9	0.0	2.2	2	0	0	2	2	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
OrfB_Zn_ribbon	PF07282.6	gi|146303614|ref|YP_001190930.1|	-	0.019	14.6	1.8	0.032	13.8	1.2	1.4	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_2	PF13240.1	gi|146303614|ref|YP_001190930.1|	-	0.02	14.3	6.0	0.43	10.1	4.1	2.2	1	1	0	1	1	1	0	zinc-ribbon	domain
zf-H2C2_2	PF13465.1	gi|146303614|ref|YP_001190930.1|	-	0.024	14.9	1.6	0.46	10.8	0.0	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
zf-LITAF-like	PF10601.4	gi|146303614|ref|YP_001190930.1|	-	0.024	14.4	0.4	5.3	6.9	0.1	2.1	2	0	0	2	2	2	0	LITAF-like	zinc	ribbon	domain
DUF329	PF03884.9	gi|146303614|ref|YP_001190930.1|	-	0.025	14.1	1.2	1.8	8.1	0.1	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
IBR	PF01485.16	gi|146303614|ref|YP_001190930.1|	-	0.028	14.2	1.1	0.038	13.8	0.7	1.3	1	0	0	1	1	1	0	IBR	domain
Auto_anti-p27	PF06677.7	gi|146303614|ref|YP_001190930.1|	-	0.032	14.0	2.7	0.66	9.7	2.2	2.1	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Opy2	PF09463.5	gi|146303614|ref|YP_001190930.1|	-	0.033	14.2	1.5	4.8	7.3	0.1	2.1	2	0	0	2	2	2	0	Opy2	protein
zinc_ribbon_5	PF13719.1	gi|146303614|ref|YP_001190930.1|	-	0.035	13.6	5.6	0.2	11.2	3.9	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|146303614|ref|YP_001190930.1|	-	0.035	13.7	5.3	0.16	11.6	3.7	2.0	1	1	0	1	1	1	0	zinc-ribbon	domain
CpXC	PF14353.1	gi|146303614|ref|YP_001190930.1|	-	0.038	13.9	2.8	0.39	10.6	0.0	2.0	1	1	1	2	2	2	0	CpXC	protein
Spt4	PF06093.8	gi|146303614|ref|YP_001190930.1|	-	0.047	13.5	0.8	0.084	12.7	0.6	1.5	1	1	0	1	1	1	0	Spt4/RpoE2	zinc	finger
zf-IS66	PF13005.2	gi|146303614|ref|YP_001190930.1|	-	0.052	13.5	0.5	9.1	6.3	0.0	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
Nudix_N_2	PF14803.1	gi|146303614|ref|YP_001190930.1|	-	0.053	13.2	3.0	1.8	8.2	0.2	2.2	2	0	0	2	2	2	0	Nudix	N-terminal
ADK_lid	PF05191.9	gi|146303614|ref|YP_001190930.1|	-	0.06	13.0	6.5	0.41	10.3	0.7	2.2	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
zf-ISL3	PF14690.1	gi|146303614|ref|YP_001190930.1|	-	0.082	12.9	4.4	1.9	8.5	0.3	2.2	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
YhfH	PF14149.1	gi|146303614|ref|YP_001190930.1|	-	0.083	12.6	0.3	4.1	7.2	0.0	2.1	2	0	0	2	2	2	0	YhfH-like	protein
zf-HYPF	PF07503.7	gi|146303614|ref|YP_001190930.1|	-	0.096	12.1	2.0	0.72	9.3	0.1	2.1	2	0	0	2	2	2	0	HypF	finger
Toxin-deaminase	PF14424.1	gi|146303614|ref|YP_001190930.1|	-	0.1	12.5	0.8	0.12	12.3	0.3	1.4	1	1	0	1	1	1	0	The	BURPS668_1122	family	of	deaminases
Elf1	PF05129.8	gi|146303614|ref|YP_001190930.1|	-	0.11	12.2	0.8	0.12	12.1	0.5	1.1	1	0	0	1	1	1	0	Transcription	elongation	factor	Elf1	like
Cys_rich_CPCC	PF14206.1	gi|146303614|ref|YP_001190930.1|	-	0.12	11.9	1.1	0.89	9.1	0.1	2.0	2	0	0	2	2	2	0	Cysteine-rich	CPCC
zf-NADH-PPase	PF09297.6	gi|146303614|ref|YP_001190930.1|	-	0.13	11.8	1.9	3.6	7.1	0.0	2.1	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF2256	PF10013.4	gi|146303614|ref|YP_001190930.1|	-	0.14	11.9	1.3	2.2	8.0	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2256)
DNA_ligase_ZBD	PF03119.11	gi|146303614|ref|YP_001190930.1|	-	0.14	11.8	4.7	0.42	10.3	0.1	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
A2L_zn_ribbon	PF08792.5	gi|146303614|ref|YP_001190930.1|	-	0.16	11.4	1.8	1.4	8.4	0.2	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|146303614|ref|YP_001190930.1|	-	0.29	10.9	4.2	1.7	8.4	0.7	2.1	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|146303614|ref|YP_001190930.1|	-	0.3	10.7	2.5	4.4	7.0	0.1	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
Sgf11	PF08209.6	gi|146303614|ref|YP_001190930.1|	-	0.32	10.3	3.0	5.8	6.3	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
DUF1272	PF06906.6	gi|146303614|ref|YP_001190930.1|	-	0.33	10.8	2.9	4.3	7.2	2.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1272)
zinc-ribbons_6	PF07191.7	gi|146303614|ref|YP_001190930.1|	-	0.35	10.6	2.5	2.3	8.0	1.8	1.9	1	1	0	1	1	1	0	zinc-ribbons
zf-AN1	PF01428.11	gi|146303614|ref|YP_001190930.1|	-	0.44	10.4	3.1	1.9	8.4	2.2	1.8	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zf-RING_3	PF14369.1	gi|146303614|ref|YP_001190930.1|	-	0.44	10.5	6.1	0.99	9.4	0.3	2.1	1	1	1	2	2	2	0	zinc-finger
DUF2225	PF09986.4	gi|146303614|ref|YP_001190930.1|	-	0.56	9.6	4.5	6.6	6.1	0.3	2.0	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2225)
Zn_Tnp_IS91	PF14319.1	gi|146303614|ref|YP_001190930.1|	-	0.59	9.6	2.8	2.8	7.5	0.1	2.0	1	1	1	2	2	2	0	Transposase	zinc-binding	domain
zf-C2H2	PF00096.21	gi|146303614|ref|YP_001190930.1|	-	0.69	10.3	4.4	1.2	9.6	0.3	2.2	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
Zn_Tnp_IS1	PF03811.8	gi|146303614|ref|YP_001190930.1|	-	0.8	9.2	4.3	9.9	5.7	0.1	2.2	1	1	1	2	2	2	0	InsA	N-terminal	domain
zf-C2HC_2	PF13913.1	gi|146303614|ref|YP_001190930.1|	-	0.92	9.2	4.6	3.4	7.4	0.3	2.2	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
Zn-ribbon_8	PF09723.5	gi|146303614|ref|YP_001190930.1|	-	1.2	9.1	6.1	8.3	6.4	0.5	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-C3HC4_3	PF13920.1	gi|146303614|ref|YP_001190930.1|	-	1.2	8.8	6.2	1.3	8.7	0.7	2.1	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
Ogr_Delta	PF04606.7	gi|146303614|ref|YP_001190930.1|	-	1.3	8.7	4.6	1.2	8.8	0.1	2.1	1	1	1	2	2	2	0	Ogr/Delta-like	zinc	finger
Rubredoxin	PF00301.15	gi|146303614|ref|YP_001190930.1|	-	4.3	7.2	5.6	10	6.0	0.5	2.1	1	1	1	2	2	2	0	Rubredoxin
DUF1610	PF07754.6	gi|146303614|ref|YP_001190930.1|	-	4.4	7.5	9.6	0.78	9.9	1.1	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
zf-RING_4	PF14570.1	gi|146303614|ref|YP_001190930.1|	-	9.2	5.9	7.3	14	5.4	0.7	2.1	1	1	1	2	2	2	0	RING/Ubox	like	zinc-binding	domain
HTH_24	PF13412.1	gi|146303615|ref|YP_001190931.1|	-	6.1e-26	89.5	0.0	9.6e-12	44.1	0.0	2.7	3	0	0	3	3	2	2	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|146303615|ref|YP_001190931.1|	-	1.3e-18	66.2	0.0	1.1e-09	37.6	0.0	2.4	2	0	0	2	2	2	2	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146303615|ref|YP_001190931.1|	-	1.6e-11	43.7	0.1	0.00022	20.8	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_5	PF01022.15	gi|146303615|ref|YP_001190931.1|	-	5e-11	42.0	0.0	1.3e-06	27.9	0.0	2.4	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|146303615|ref|YP_001190931.1|	-	2.4e-10	39.9	0.1	3.8e-06	26.4	0.0	2.3	2	0	0	2	2	2	2	MarR	family
HTH_11	PF08279.7	gi|146303615|ref|YP_001190931.1|	-	3.2e-09	36.2	0.1	8.9e-06	25.2	0.0	2.5	2	0	0	2	2	2	2	HTH	domain
HTH_23	PF13384.1	gi|146303615|ref|YP_001190931.1|	-	1.6e-07	30.7	0.1	0.0006	19.3	0.0	2.5	2	0	0	2	2	2	2	Homeodomain-like	domain
HTH_20	PF12840.2	gi|146303615|ref|YP_001190931.1|	-	1.9e-07	30.7	0.0	1.9e-05	24.3	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
Sigma70_r4_2	PF08281.7	gi|146303615|ref|YP_001190931.1|	-	4e-07	29.3	0.3	0.0027	17.1	0.0	2.4	2	0	0	2	2	2	2	Sigma-70,	region	4
Fe_dep_repress	PF01325.14	gi|146303615|ref|YP_001190931.1|	-	2.2e-06	27.5	0.6	0.036	14.0	0.0	2.8	3	0	0	3	3	2	2	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|146303615|ref|YP_001190931.1|	-	3.7e-06	26.5	3.5	0.00017	21.1	0.1	2.8	3	0	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.7	gi|146303615|ref|YP_001190931.1|	-	8.2e-06	25.2	0.0	3.4e-05	23.2	0.1	1.9	2	0	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
HTH_10	PF04967.7	gi|146303615|ref|YP_001190931.1|	-	2.8e-05	23.6	0.0	0.024	14.1	0.0	2.5	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_Tnp_Tc3_2	PF01498.13	gi|146303615|ref|YP_001190931.1|	-	2.9e-05	24.0	1.0	0.0002	21.3	0.1	2.3	2	0	0	2	2	2	1	Transposase
GerE	PF00196.14	gi|146303615|ref|YP_001190931.1|	-	3e-05	23.2	0.2	0.29	10.5	0.0	2.6	2	0	0	2	2	2	2	Bacterial	regulatory	proteins,	luxR	family
Sigma70_r4	PF04545.11	gi|146303615|ref|YP_001190931.1|	-	0.00011	21.3	0.2	0.33	10.3	0.0	2.4	2	0	0	2	2	2	2	Sigma-70,	region	4
HTH_Mga	PF08280.6	gi|146303615|ref|YP_001190931.1|	-	0.00014	21.5	0.1	0.0057	16.3	0.0	2.4	2	0	0	2	2	2	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_38	PF13936.1	gi|146303615|ref|YP_001190931.1|	-	0.0002	20.8	0.3	0.042	13.3	0.0	3.0	3	0	0	3	3	2	1	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|146303615|ref|YP_001190931.1|	-	0.00029	20.7	0.1	0.035	14.0	0.0	2.4	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|146303615|ref|YP_001190931.1|	-	0.00048	20.1	0.1	0.092	12.8	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
TFIIE_alpha	PF02002.12	gi|146303615|ref|YP_001190931.1|	-	0.0005	19.5	1.0	0.0028	17.1	0.0	2.2	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|146303615|ref|YP_001190931.1|	-	0.00055	20.2	0.1	0.91	9.8	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|146303615|ref|YP_001190931.1|	-	0.0009	19.2	0.0	0.021	14.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
NUMOD1	PF07453.8	gi|146303615|ref|YP_001190931.1|	-	0.0018	18.0	0.1	8.1	6.4	0.0	3.8	3	0	0	3	3	3	0	NUMOD1	domain
HTH_12	PF08461.5	gi|146303615|ref|YP_001190931.1|	-	0.0021	17.7	1.2	0.17	11.6	0.0	2.5	2	0	0	2	2	2	1	Ribonuclease	R	winged-helix	domain
B-block_TFIIIC	PF04182.7	gi|146303615|ref|YP_001190931.1|	-	0.0042	16.9	0.0	1.1	9.1	0.0	2.3	2	0	0	2	2	2	1	B-block	binding	subunit	of	TFIIIC
HTH_30	PF13556.1	gi|146303615|ref|YP_001190931.1|	-	0.0057	16.2	0.2	0.077	12.6	0.0	2.3	2	0	0	2	2	2	1	PucR	C-terminal	helix-turn-helix	domain
LexA_DNA_bind	PF01726.11	gi|146303615|ref|YP_001190931.1|	-	0.0058	16.1	0.1	0.96	9.0	0.0	2.4	2	0	0	2	2	2	1	LexA	DNA	binding	domain
RepL	PF05732.6	gi|146303615|ref|YP_001190931.1|	-	0.0063	15.7	0.0	0.39	9.9	0.0	2.2	2	0	0	2	2	2	1	Firmicute	plasmid	replication	protein	(RepL)
Ribosomal_S25	PF03297.10	gi|146303615|ref|YP_001190931.1|	-	0.0096	15.9	0.0	0.021	14.8	0.0	1.5	1	0	0	1	1	1	1	S25	ribosomal	protein
FeoC	PF09012.5	gi|146303615|ref|YP_001190931.1|	-	0.01	15.5	0.0	4	7.2	0.0	2.4	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
HTH_Tnp_ISL3	PF13542.1	gi|146303615|ref|YP_001190931.1|	-	0.011	14.8	0.0	1.2	8.3	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_32	PF13565.1	gi|146303615|ref|YP_001190931.1|	-	0.016	15.9	0.0	0.089	13.6	0.0	2.1	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_8	PF02954.14	gi|146303615|ref|YP_001190931.1|	-	0.021	14.3	0.1	0.06	12.8	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
DUF1181	PF06680.6	gi|146303615|ref|YP_001190931.1|	-	0.022	14.4	0.0	0.044	13.4	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1181)
HTH_17	PF12728.2	gi|146303615|ref|YP_001190931.1|	-	0.028	14.6	0.1	0.14	12.3	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|146303615|ref|YP_001190931.1|	-	0.031	14.3	0.1	0.9	9.7	0.0	2.6	2	0	0	2	2	2	0	Helix-turn-helix	domain
Cullin	PF00888.17	gi|146303615|ref|YP_001190931.1|	-	0.033	12.7	0.0	0.077	11.5	0.0	1.6	2	0	0	2	2	2	0	Cullin	family
HTH_40	PF14493.1	gi|146303615|ref|YP_001190931.1|	-	0.045	13.9	0.0	9.1	6.5	0.0	2.7	2	1	1	3	3	2	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|146303615|ref|YP_001190931.1|	-	0.048	13.8	0.1	13	5.9	0.0	2.2	2	0	0	2	2	2	0	Winged	helix-turn	helix
HTH_9	PF08221.6	gi|146303615|ref|YP_001190931.1|	-	0.049	13.5	0.1	5	7.0	0.0	2.3	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Myb_DNA-bind_6	PF13921.1	gi|146303615|ref|YP_001190931.1|	-	0.072	13.1	0.1	0.36	10.9	0.0	2.1	2	0	0	2	2	2	0	Myb-like	DNA-binding	domain
HTH_1	PF00126.22	gi|146303615|ref|YP_001190931.1|	-	0.088	12.5	0.0	0.93	9.2	0.0	2.1	2	0	0	2	2	2	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_3	PF01381.17	gi|146303615|ref|YP_001190931.1|	-	0.11	12.3	0.0	1.3	8.9	0.0	2.4	2	0	0	2	2	2	0	Helix-turn-helix
HTH_IclR	PF09339.5	gi|146303615|ref|YP_001190931.1|	-	0.11	12.0	0.0	0.51	9.9	0.0	2.1	3	0	0	3	3	2	0	IclR	helix-turn-helix	domain
Put_DNA-bind_N	PF06971.8	gi|146303615|ref|YP_001190931.1|	-	0.22	11.2	1.4	0.61	9.8	0.0	2.4	2	1	0	2	2	2	0	Putative	DNA-binding	protein	N-terminus
Pkinase	PF00069.20	gi|146303616|ref|YP_001190932.1|	-	1.8e-28	99.4	0.0	4.3e-28	98.1	0.0	1.6	2	0	0	2	2	2	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|146303616|ref|YP_001190932.1|	-	1.1e-16	60.6	0.0	2.2e-16	59.6	0.0	1.5	1	0	0	1	1	1	1	Protein	tyrosine	kinase
TPR_16	PF13432.1	gi|146303616|ref|YP_001190932.1|	-	1.5e-07	31.8	1.8	5.8e-05	23.6	0.3	4.1	3	1	1	4	4	4	2	Tetratricopeptide	repeat
TPR_11	PF13414.1	gi|146303616|ref|YP_001190932.1|	-	6.9e-07	28.8	3.4	0.00019	21.0	0.1	3.7	2	1	1	3	3	3	2	TPR	repeat
Apc3	PF12895.2	gi|146303616|ref|YP_001190932.1|	-	5.5e-06	26.4	0.5	0.03	14.4	0.0	2.7	2	0	0	2	2	2	2	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_14	PF13428.1	gi|146303616|ref|YP_001190932.1|	-	0.00013	22.2	1.9	1.3	9.8	0.0	4.8	4	1	1	5	5	4	1	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|146303616|ref|YP_001190932.1|	-	0.00031	20.2	2.0	0.0051	16.3	0.0	3.7	3	0	0	3	3	3	1	Tetratricopeptide	repeat
TPR_2	PF07719.12	gi|146303616|ref|YP_001190932.1|	-	0.00054	19.6	7.3	0.013	15.3	0.1	4.9	3	2	2	5	5	5	1	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|146303616|ref|YP_001190932.1|	-	0.00075	19.7	0.7	1.8	8.9	0.2	3.1	2	1	0	2	2	2	2	Tetratricopeptide	repeat
BTAD	PF03704.12	gi|146303616|ref|YP_001190932.1|	-	0.0022	18.3	0.2	13	6.0	0.0	4.0	4	1	0	4	4	3	0	Bacterial	transcriptional	activator	domain
PPR	PF01535.15	gi|146303616|ref|YP_001190932.1|	-	0.0037	17.1	1.4	10	6.3	0.0	4.4	4	0	0	4	4	4	0	PPR	repeat
Kdo	PF06293.9	gi|146303616|ref|YP_001190932.1|	-	0.013	14.5	0.0	0.042	12.8	0.0	1.8	2	0	0	2	2	2	0	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
TPR_6	PF13174.1	gi|146303616|ref|YP_001190932.1|	-	0.015	15.7	0.7	1.7e+02	3.0	0.0	5.1	5	0	0	5	5	4	0	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|146303616|ref|YP_001190932.1|	-	0.019	14.9	2.2	3	7.8	0.0	3.6	3	1	0	3	3	3	0	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|146303616|ref|YP_001190932.1|	-	0.046	13.5	0.3	1.2	9.0	0.0	3.3	3	0	0	3	3	3	0	Tetratricopeptide	repeat
PPR_2	PF13041.1	gi|146303616|ref|YP_001190932.1|	-	0.087	12.8	0.1	3.8	7.5	0.1	2.9	3	0	0	3	3	2	0	PPR	repeat	family
TPR_20	PF14561.1	gi|146303616|ref|YP_001190932.1|	-	0.092	12.8	0.3	0.43	10.7	0.0	2.2	3	0	0	3	3	2	0	Tetratricopeptide	repeat
APH	PF01636.18	gi|146303616|ref|YP_001190932.1|	-	0.11	12.2	0.0	14	5.3	0.0	2.4	1	1	1	2	2	2	0	Phosphotransferase	enzyme	family
TPR_10	PF13374.1	gi|146303616|ref|YP_001190932.1|	-	0.18	11.8	0.7	3.6	7.6	0.0	2.6	2	0	0	2	2	2	0	Tetratricopeptide	repeat
AAA	PF00004.24	gi|146303617|ref|YP_001190933.1|	-	0.00022	21.4	0.2	0.00032	20.9	0.1	1.2	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF3502	PF12010.3	gi|146303617|ref|YP_001190933.1|	-	0.12	12.3	0.1	2.3	8.1	0.0	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3502)
Metallophos_3	PF14582.1	gi|146303618|ref|YP_001190934.1|	-	0.058	12.5	0.0	0.069	12.3	0.0	1.0	1	0	0	1	1	1	0	Metallophosphoesterase,	calcineurin	superfamily
PIN_3	PF13470.1	gi|146303618|ref|YP_001190934.1|	-	0.13	12.9	0.0	0.36	11.4	0.0	1.7	1	1	1	2	2	2	0	PIN	domain
PhoU	PF01895.14	gi|146303619|ref|YP_001190935.1|	-	0.14	12.5	2.8	6.2	7.3	0.0	2.7	1	1	1	2	2	2	0	PhoU	domain
CBS	PF00571.23	gi|146303620|ref|YP_001190936.1|	-	2.4e-51	171.2	9.2	2.3e-14	52.9	0.2	4.1	4	0	0	4	4	4	4	CBS	domain
BiPBP_C	PF06832.7	gi|146303620|ref|YP_001190936.1|	-	0.014	15.3	0.0	1	9.2	0.0	2.4	2	0	0	2	2	2	0	Penicillin-Binding	Protein	C-terminus	Family
T2SE_Nter	PF05157.10	gi|146303620|ref|YP_001190936.1|	-	0.051	13.6	0.0	0.26	11.3	0.0	2.2	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	E,	N-terminal	domain
DUF3659	PF12396.3	gi|146303620|ref|YP_001190936.1|	-	0.1	12.2	0.4	0.82	9.3	0.1	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3659)
Arch_ATPase	PF01637.13	gi|146303620|ref|YP_001190936.1|	-	0.11	12.2	0.0	0.35	10.5	0.0	1.7	2	1	0	2	2	2	0	Archaeal	ATPase
Topoisom_bac	PF01131.15	gi|146303621|ref|YP_001190937.1|	-	4.7e-112	374.7	0.0	6e-112	374.4	0.0	1.1	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim_Crpt	PF13342.1	gi|146303621|ref|YP_001190937.1|	-	2.6e-14	52.6	2.8	2.6e-14	52.6	2.0	2.2	2	0	0	2	2	2	1	C-terminal	repeat	of	topoisomerase
Toprim	PF01751.17	gi|146303621|ref|YP_001190937.1|	-	1.8e-11	43.8	0.0	4.4e-11	42.6	0.0	1.7	1	0	0	1	1	1	1	Toprim	domain
DUF2959	PF11172.3	gi|146303621|ref|YP_001190937.1|	-	0.0018	18.0	0.5	1.1	8.9	0.1	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF2959)
HTH_45	PF14947.1	gi|146303621|ref|YP_001190937.1|	-	0.03	14.1	0.0	0.083	12.7	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix
DUF217	PF02697.9	gi|146303622|ref|YP_001190938.1|	-	0.075	13.2	0.3	0.12	12.6	0.2	1.3	1	0	0	1	1	1	0	Uncharacterized	ACR,	COG1753
DUF3502	PF12010.3	gi|146303622|ref|YP_001190938.1|	-	0.12	12.3	0.3	0.2	11.6	0.2	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3502)
Lactamase_B	PF00753.22	gi|146303623|ref|YP_001190939.1|	-	2.7e-07	30.4	1.7	9.2e-07	28.6	1.2	1.8	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146303623|ref|YP_001190939.1|	-	0.034	13.6	0.1	0.087	12.3	0.0	1.6	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
IF-2	PF11987.3	gi|146303623|ref|YP_001190939.1|	-	0.064	13.1	0.5	0.13	12.1	0.3	1.5	1	0	0	1	1	1	0	Translation-initiation	factor	2
Radical_SAM	PF04055.16	gi|146303626|ref|YP_001190942.1|	-	7.2e-07	29.5	0.0	1.4e-06	28.5	0.0	1.4	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146303626|ref|YP_001190942.1|	-	0.012	15.6	0.0	0.022	14.7	0.0	1.4	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Phosphodiest	PF01663.17	gi|146303627|ref|YP_001190943.1|	-	1e-19	71.1	0.1	5.2e-17	62.2	0.1	2.1	1	1	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
PglZ	PF08665.7	gi|146303627|ref|YP_001190943.1|	-	2.9e-05	23.8	0.0	0.0014	18.3	0.0	2.3	2	0	0	2	2	2	2	PglZ	domain
Sugar_tr	PF00083.19	gi|146303628|ref|YP_001190944.1|	-	6.3e-42	143.6	24.3	2e-41	142.0	16.9	1.6	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303628|ref|YP_001190944.1|	-	2.9e-23	82.1	50.4	1.6e-19	69.8	17.1	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF4231	PF14015.1	gi|146303628|ref|YP_001190944.1|	-	0.3	11.0	0.1	0.3	11.0	0.1	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4231)
CbiQ	PF02361.11	gi|146303629|ref|YP_001190945.1|	-	7.6e-16	58.3	10.2	7.6e-16	58.3	7.1	1.7	2	0	0	2	2	2	1	Cobalt	transport	protein
ABC_tran	PF00005.22	gi|146303630|ref|YP_001190946.1|	-	3.2e-45	153.7	0.0	6e-22	78.4	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|146303630|ref|YP_001190946.1|	-	6.2e-23	82.1	7.5	5.4e-07	29.8	0.0	4.1	2	2	1	3	3	3	3	AAA	domain
AAA_29	PF13555.1	gi|146303630|ref|YP_001190946.1|	-	4.1e-10	39.0	0.9	0.00028	20.3	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|146303630|ref|YP_001190946.1|	-	5.9e-10	38.7	0.3	0.0011	18.2	0.0	3.5	4	0	0	4	4	4	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|146303630|ref|YP_001190946.1|	-	1.9e-09	38.1	0.4	0.0002	21.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303630|ref|YP_001190946.1|	-	2.5e-07	30.1	0.3	0.098	11.6	0.0	3.9	4	0	0	4	4	4	2	AAA	ATPase	domain
AAA_16	PF13191.1	gi|146303630|ref|YP_001190946.1|	-	4.9e-07	29.8	0.0	0.007	16.3	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
T2SE	PF00437.15	gi|146303630|ref|YP_001190946.1|	-	1.3e-06	27.4	0.6	0.0001	21.3	0.0	2.4	2	0	0	2	2	2	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|146303630|ref|YP_001190946.1|	-	1.5e-06	27.8	2.0	0.039	13.7	0.1	3.2	3	0	0	3	3	3	2	Part	of	AAA	domain
AAA_22	PF13401.1	gi|146303630|ref|YP_001190946.1|	-	2.4e-06	27.7	0.5	0.058	13.5	0.2	2.8	2	2	0	2	2	2	2	AAA	domain
AAA_17	PF13207.1	gi|146303630|ref|YP_001190946.1|	-	4.4e-06	27.5	0.1	0.0062	17.3	0.0	3.2	3	0	0	3	3	3	1	AAA	domain
NACHT	PF05729.7	gi|146303630|ref|YP_001190946.1|	-	1.1e-05	25.1	1.8	0.021	14.5	0.1	2.5	2	0	0	2	2	2	2	NACHT	domain
DUF258	PF03193.11	gi|146303630|ref|YP_001190946.1|	-	3.6e-05	23.0	0.3	0.03	13.5	0.0	2.3	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
SbcCD_C	PF13558.1	gi|146303630|ref|YP_001190946.1|	-	6.7e-05	22.7	0.0	0.068	13.0	0.0	3.2	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.9	gi|146303630|ref|YP_001190946.1|	-	8.3e-05	22.3	1.7	0.75	9.5	0.1	3.4	3	0	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA_18	PF13238.1	gi|146303630|ref|YP_001190946.1|	-	0.00011	22.4	0.2	0.053	13.8	0.0	2.7	3	0	0	3	3	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|146303630|ref|YP_001190946.1|	-	0.00012	21.2	0.3	0.13	11.3	0.0	2.3	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
AAA_30	PF13604.1	gi|146303630|ref|YP_001190946.1|	-	0.00017	21.2	0.1	0.38	10.2	0.0	2.9	2	1	0	2	2	2	1	AAA	domain
AAA_25	PF13481.1	gi|146303630|ref|YP_001190946.1|	-	0.00019	20.8	0.1	0.2	11.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|146303630|ref|YP_001190946.1|	-	0.00035	20.0	0.9	0.11	11.8	0.1	2.3	2	0	0	2	2	2	1	AAA-like	domain
MMR_HSR1	PF01926.18	gi|146303630|ref|YP_001190946.1|	-	0.00038	20.3	1.2	0.022	14.7	0.0	2.5	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
FtsK_SpoIIIE	PF01580.13	gi|146303630|ref|YP_001190946.1|	-	0.00048	19.6	0.8	0.1	12.0	0.0	2.4	2	1	0	2	2	2	1	FtsK/SpoIIIE	family
cobW	PF02492.14	gi|146303630|ref|YP_001190946.1|	-	0.00054	19.4	1.7	0.59	9.5	0.0	2.4	2	0	0	2	2	2	2	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|146303630|ref|YP_001190946.1|	-	0.0006	19.5	0.7	0.3	10.7	0.0	2.6	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NTPase_1	PF03266.10	gi|146303630|ref|YP_001190946.1|	-	0.00084	19.0	0.4	1.4	8.6	0.1	2.6	2	0	0	2	2	2	2	NTPase
UPF0079	PF02367.12	gi|146303630|ref|YP_001190946.1|	-	0.00088	18.8	0.6	0.65	9.6	0.2	2.5	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
Arch_ATPase	PF01637.13	gi|146303630|ref|YP_001190946.1|	-	0.0012	18.5	1.8	0.64	9.6	0.1	2.4	2	0	0	2	2	2	2	Archaeal	ATPase
ABC_ATPase	PF09818.4	gi|146303630|ref|YP_001190946.1|	-	0.0015	17.1	0.2	0.45	9.0	0.0	2.3	2	0	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_33	PF13671.1	gi|146303630|ref|YP_001190946.1|	-	0.0039	17.0	0.1	4.1	7.2	0.0	2.8	3	1	0	3	3	3	0	AAA	domain
Miro	PF08477.8	gi|146303630|ref|YP_001190946.1|	-	0.0085	16.5	0.1	5.5	7.5	0.1	2.3	2	0	0	2	2	2	0	Miro-like	protein
NB-ARC	PF00931.17	gi|146303630|ref|YP_001190946.1|	-	0.01	14.7	0.3	2.9	6.6	0.1	2.4	2	0	0	2	2	2	0	NB-ARC	domain
AAA	PF00004.24	gi|146303630|ref|YP_001190946.1|	-	0.015	15.4	0.1	0.56	10.4	0.0	2.4	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PduV-EutP	PF10662.4	gi|146303630|ref|YP_001190946.1|	-	0.019	14.4	1.4	4.7	6.7	0.2	2.3	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
G-alpha	PF00503.15	gi|146303630|ref|YP_001190946.1|	-	0.025	13.2	0.1	1	7.9	0.0	2.1	2	0	0	2	2	2	0	G-protein	alpha	subunit
Zeta_toxin	PF06414.7	gi|146303630|ref|YP_001190946.1|	-	0.033	13.3	0.1	1.4	7.9	0.0	2.2	2	0	0	2	2	2	0	Zeta	toxin
Dynamin_N	PF00350.18	gi|146303630|ref|YP_001190946.1|	-	0.034	13.9	0.6	0.38	10.5	0.0	2.4	3	0	0	3	3	2	0	Dynamin	family
AAA_14	PF13173.1	gi|146303630|ref|YP_001190946.1|	-	0.037	13.9	1.7	2.3	8.1	0.1	2.9	3	0	0	3	3	2	0	AAA	domain
RNA_helicase	PF00910.17	gi|146303630|ref|YP_001190946.1|	-	0.045	13.9	0.1	4.4	7.5	0.0	2.3	2	0	0	2	2	2	0	RNA	helicase
ATP_bind_1	PF03029.12	gi|146303630|ref|YP_001190946.1|	-	0.048	13.1	0.0	4.6	6.7	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.1	gi|146303630|ref|YP_001190946.1|	-	0.063	13.2	0.6	7.1	6.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_13	PF13166.1	gi|146303630|ref|YP_001190946.1|	-	0.081	11.3	0.3	1.2	7.4	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|146303630|ref|YP_001190946.1|	-	0.091	12.1	0.4	2.5	7.5	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
DUF87	PF01935.12	gi|146303630|ref|YP_001190946.1|	-	0.13	12.0	1.2	0.72	9.6	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF87
Viral_helicase1	PF01443.13	gi|146303630|ref|YP_001190946.1|	-	0.15	11.5	0.1	8.1	5.8	0.0	2.5	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
AAA_24	PF13479.1	gi|146303630|ref|YP_001190946.1|	-	0.15	11.5	0.1	11	5.5	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Pox_A32	PF04665.7	gi|146303630|ref|YP_001190946.1|	-	0.18	11.0	0.6	7.6	5.7	0.1	2.1	2	0	0	2	2	2	0	Poxvirus	A32	protein
Adeno_IVa2	PF02456.10	gi|146303630|ref|YP_001190946.1|	-	0.22	10.1	0.0	15	4.1	0.0	2.1	2	0	0	2	2	2	0	Adenovirus	IVa2	protein
KaiC	PF06745.8	gi|146303630|ref|YP_001190946.1|	-	0.84	8.7	3.0	1.1	8.3	0.0	2.4	3	0	0	3	3	3	0	KaiC
DUF3584	PF12128.3	gi|146303630|ref|YP_001190946.1|	-	7.4	3.7	6.8	0.46	7.7	0.9	1.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3584)
DUF2127	PF09900.4	gi|146303631|ref|YP_001190947.1|	-	0.15	12.1	0.3	0.15	12.1	0.2	1.7	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2127)
Tmemb_170	PF10190.4	gi|146303631|ref|YP_001190947.1|	-	4.2	7.4	7.1	3.2	7.8	0.4	2.6	2	1	0	2	2	2	0	Putative	transmembrane	protein	170
PQQ_2	PF13360.1	gi|146303632|ref|YP_001190948.1|	-	8.6e-05	22.1	1.5	0.0014	18.1	0.2	2.8	1	1	1	2	2	2	1	PQQ-like	domain
Arylesterase	PF01731.15	gi|146303632|ref|YP_001190948.1|	-	0.0018	18.2	2.4	0.065	13.2	0.1	2.9	2	0	0	2	2	2	1	Arylesterase
Lactonase	PF10282.4	gi|146303632|ref|YP_001190948.1|	-	0.0026	16.8	3.0	0.019	14.0	0.5	2.4	2	0	0	2	2	2	1	Lactonase,	7-bladed	beta-propeller
SGL	PF08450.7	gi|146303632|ref|YP_001190948.1|	-	0.11	11.7	0.9	23	4.2	0.0	2.9	2	1	1	3	3	3	0	SMP-30/Gluconolaconase/LRE-like	region
DUF1900	PF08954.6	gi|146303632|ref|YP_001190948.1|	-	0.16	11.4	0.4	3.1	7.3	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1900)
PQQ_3	PF13570.1	gi|146303632|ref|YP_001190948.1|	-	0.24	11.7	13.2	6.4	7.1	0.1	4.6	5	1	1	6	6	6	0	PQQ-like	domain
NHL	PF01436.16	gi|146303632|ref|YP_001190948.1|	-	1.2	9.2	7.9	9.5	6.3	0.1	3.7	4	0	0	4	4	4	0	NHL	repeat
Pro-kuma_activ	PF09286.6	gi|146303633|ref|YP_001190949.1|	-	2.3e-22	79.5	0.1	4.8e-22	78.5	0.1	1.4	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.17	gi|146303633|ref|YP_001190949.1|	-	1.7e-08	34.0	0.8	1.7e-08	34.0	0.6	2.0	2	0	0	2	2	2	1	Subtilase	family
Big_3_4	PF13754.1	gi|146303633|ref|YP_001190949.1|	-	0.0072	16.6	1.1	0.0072	16.6	0.8	4.2	3	0	0	3	3	3	1	Bacterial	Ig-like	domain	(group	3)
MFS_1	PF07690.11	gi|146303634|ref|YP_001190950.1|	-	1.3e-28	99.7	48.4	4.5e-19	68.3	15.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Lysine_decarbox	PF03641.9	gi|146303635|ref|YP_001190951.1|	-	0.00041	20.1	0.1	0.00057	19.7	0.1	1.3	1	0	0	1	1	1	1	Possible	lysine	decarboxylase
Nuc_deoxyrib_tr	PF05014.10	gi|146303635|ref|YP_001190951.1|	-	0.0064	16.3	0.0	0.011	15.5	0.0	1.5	1	0	0	1	1	1	1	Nucleoside	2-deoxyribosyltransferase
Methyltransf_11	PF08241.7	gi|146303636|ref|YP_001190952.1|	-	3.4e-12	46.6	0.0	5.1e-12	46.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303636|ref|YP_001190952.1|	-	2.4e-06	28.0	0.0	3.4e-06	27.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146303636|ref|YP_001190952.1|	-	2.7e-06	27.1	0.0	3.4e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303636|ref|YP_001190952.1|	-	5.3e-06	26.1	0.0	7.6e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|146303636|ref|YP_001190952.1|	-	2.7e-05	23.5	0.0	3.6e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.7	gi|146303636|ref|YP_001190952.1|	-	8e-05	23.0	0.0	0.00012	22.5	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303636|ref|YP_001190952.1|	-	0.004	17.4	0.0	0.007	16.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_9	PF08003.6	gi|146303636|ref|YP_001190952.1|	-	0.0043	15.7	0.0	0.005	15.5	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
Methyltransf_26	PF13659.1	gi|146303636|ref|YP_001190952.1|	-	0.0096	15.9	0.0	0.014	15.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
FmrO	PF07091.6	gi|146303636|ref|YP_001190952.1|	-	0.012	14.6	0.0	0.015	14.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	RNA	methyltransferase	(FmrO)
TehB	PF03848.9	gi|146303636|ref|YP_001190952.1|	-	0.042	13.0	0.0	0.055	12.6	0.0	1.2	1	0	0	1	1	1	0	Tellurite	resistance	protein	TehB
MetW	PF07021.7	gi|146303636|ref|YP_001190952.1|	-	0.051	12.9	0.0	0.078	12.3	0.0	1.3	1	1	0	1	1	1	0	Methionine	biosynthesis	protein	MetW
HTH_10	PF04967.7	gi|146303637|ref|YP_001190953.1|	-	5.7e-18	64.2	0.0	9.6e-18	63.5	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Sigma70_r4	PF04545.11	gi|146303637|ref|YP_001190953.1|	-	0.00013	21.1	0.0	0.00024	20.3	0.0	1.4	1	0	0	1	1	1	1	Sigma-70,	region	4
MarR_2	PF12802.2	gi|146303637|ref|YP_001190953.1|	-	0.012	15.2	0.0	0.027	14.1	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Fe_dep_repress	PF01325.14	gi|146303637|ref|YP_001190953.1|	-	0.025	14.5	0.1	0.071	13.0	0.0	1.8	1	1	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_27	PF13463.1	gi|146303637|ref|YP_001190953.1|	-	0.031	14.5	0.0	0.12	12.6	0.0	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Sigma70_r4_2	PF08281.7	gi|146303637|ref|YP_001190953.1|	-	0.033	13.6	0.2	0.25	10.8	0.1	2.3	2	0	0	2	2	2	0	Sigma-70,	region	4
NhaB	PF06450.7	gi|146303639|ref|YP_001190955.1|	-	0.075	11.6	9.8	0.13	10.8	6.8	1.4	1	0	0	1	1	1	0	Bacterial	Na+/H+	antiporter	B	(NhaB)
CAAD	PF14159.1	gi|146303639|ref|YP_001190955.1|	-	0.5	10.0	3.1	0.51	10.0	0.1	2.5	2	0	0	2	2	2	0	CAAD	domains	of	cyanobacterial	aminoacyl-tRNA	synthetase
MFS_1	PF07690.11	gi|146303640|ref|YP_001190956.1|	-	3.1e-55	187.3	40.1	3.1e-55	187.3	27.8	1.6	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303640|ref|YP_001190956.1|	-	7.9e-08	31.3	13.5	7.9e-08	31.3	9.3	2.7	2	1	0	2	2	2	2	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|146303640|ref|YP_001190956.1|	-	0.01	14.0	19.9	0.003	15.7	4.9	2.7	2	1	0	2	2	2	2	Transmembrane	secretion	effector
UNC-93	PF05978.11	gi|146303640|ref|YP_001190956.1|	-	0.53	9.7	10.9	0.059	12.8	1.1	3.0	3	0	0	3	3	3	0	Ion	channel	regulatory	protein	UNC-93
MFS_1	PF07690.11	gi|146303641|ref|YP_001190957.1|	-	4.2e-25	88.2	55.3	4.2e-25	88.2	38.3	1.6	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303641|ref|YP_001190957.1|	-	6.4e-20	71.1	36.9	4.6e-17	61.7	8.2	2.3	1	1	1	2	2	2	2	Sugar	(and	other)	transporter
SbcD_C	PF12320.3	gi|146303642|ref|YP_001190958.1|	-	0.0029	17.6	1.2	0.0085	16.1	0.1	2.2	1	1	1	2	2	2	1	Type	5	capsule	protein	repressor	C-terminal	domain
DIRP	PF06584.8	gi|146303642|ref|YP_001190958.1|	-	0.012	15.4	0.1	0.025	14.4	0.1	1.6	1	1	0	1	1	1	0	DIRP
CorA	PF01544.13	gi|146303642|ref|YP_001190958.1|	-	0.017	14.2	0.3	0.024	13.6	0.1	1.4	1	1	0	1	1	1	0	CorA-like	Mg2+	transporter	protein
DUF489	PF04356.7	gi|146303642|ref|YP_001190958.1|	-	0.039	13.5	0.1	0.25	10.8	0.0	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF489)
DivIC	PF04977.10	gi|146303642|ref|YP_001190958.1|	-	0.052	13.0	1.6	0.24	10.9	1.1	2.1	1	1	0	1	1	1	0	Septum	formation	initiator
ALIX_LYPXL_bnd	PF13949.1	gi|146303642|ref|YP_001190958.1|	-	0.08	11.8	0.7	0.11	11.4	0.5	1.1	1	0	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
Prefoldin_3	PF13758.1	gi|146303642|ref|YP_001190958.1|	-	0.088	12.5	1.0	0.73	9.6	0.1	2.1	2	0	0	2	2	2	0	Prefoldin	subunit
FeoC	PF09012.5	gi|146303642|ref|YP_001190958.1|	-	0.16	11.6	0.4	0.79	9.4	0.0	2.3	3	0	0	3	3	3	0	FeoC	like	transcriptional	regulator
MutS_IV	PF05190.13	gi|146303642|ref|YP_001190958.1|	-	0.24	11.6	2.3	0.93	9.7	0.7	2.5	2	1	1	3	3	3	0	MutS	family	domain	IV
AAA_22	PF13401.1	gi|146303643|ref|YP_001190959.1|	-	0.0052	16.9	0.0	0.014	15.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|146303643|ref|YP_001190959.1|	-	0.013	15.7	0.0	0.04	14.2	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|146303643|ref|YP_001190959.1|	-	0.032	14.2	0.0	0.084	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_17	PF13207.1	gi|146303643|ref|YP_001190959.1|	-	0.046	14.5	0.1	0.17	12.7	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|146303643|ref|YP_001190959.1|	-	0.055	13.0	0.0	0.12	11.9	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.24	gi|146303643|ref|YP_001190959.1|	-	0.093	12.9	0.0	0.27	11.4	0.0	1.8	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.17	gi|146303643|ref|YP_001190959.1|	-	0.1	11.4	0.0	0.23	10.2	0.0	1.5	1	0	0	1	1	1	0	NB-ARC	domain
Pkinase	PF00069.20	gi|146303644|ref|YP_001190960.1|	-	6.9e-25	87.6	0.0	1.3e-24	86.7	0.0	1.4	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|146303644|ref|YP_001190960.1|	-	2.6e-08	33.2	0.0	6.2e-08	32.0	0.0	1.7	1	1	0	1	1	1	1	Protein	tyrosine	kinase
RIO1	PF01163.17	gi|146303644|ref|YP_001190960.1|	-	0.017	14.5	0.0	0.031	13.6	0.0	1.4	1	0	0	1	1	1	0	RIO1	family
PIN	PF01850.16	gi|146303645|ref|YP_001190961.1|	-	1.3e-12	48.0	0.0	1.5e-12	47.8	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|146303646|ref|YP_001190962.1|	-	1.2e-11	44.0	0.6	1.7e-11	43.5	0.4	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF104	PF01954.11	gi|146303646|ref|YP_001190962.1|	-	0.037	14.0	0.2	0.062	13.3	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	DUF104
Sugar_tr	PF00083.19	gi|146303647|ref|YP_001190963.1|	-	3.2e-52	177.6	20.0	4e-52	177.2	13.9	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303647|ref|YP_001190963.1|	-	1.3e-27	96.4	52.9	1.3e-22	80.0	24.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1129	PF06570.6	gi|146303647|ref|YP_001190963.1|	-	0.01	15.1	1.0	0.01	15.1	0.7	2.8	2	1	2	4	4	4	0	Protein	of	unknown	function	(DUF1129)
DUF4500	PF14937.1	gi|146303648|ref|YP_001190964.1|	-	0.31	10.9	1.1	3.4	7.5	0.4	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4500)
PadR	PF03551.9	gi|146303649|ref|YP_001190965.1|	-	2.5e-18	65.6	0.1	5.9e-18	64.4	0.0	1.6	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
DUF505	PF04458.7	gi|146303649|ref|YP_001190965.1|	-	0.0003	19.0	0.0	0.00038	18.7	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
DUF4364	PF14277.1	gi|146303649|ref|YP_001190965.1|	-	0.0009	18.8	0.0	0.0017	17.9	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4364)
HTH_45	PF14947.1	gi|146303649|ref|YP_001190965.1|	-	0.0014	18.3	0.7	0.0036	17.0	0.0	2.0	3	0	0	3	3	3	1	Winged	helix-turn-helix
HTH_42	PF06224.7	gi|146303649|ref|YP_001190965.1|	-	0.0038	16.5	0.0	0.0038	16.5	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|146303649|ref|YP_001190965.1|	-	0.0047	16.6	0.1	0.03	14.0	0.1	2.1	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146303649|ref|YP_001190965.1|	-	0.0072	16.6	0.0	0.018	15.3	0.0	1.7	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
AphA_like	PF14557.1	gi|146303649|ref|YP_001190965.1|	-	0.0084	15.6	0.0	0.0089	15.5	0.0	1.2	1	0	0	1	1	1	1	Putative	AphA-like	transcriptional	regulator
PaaX	PF07848.7	gi|146303649|ref|YP_001190965.1|	-	0.019	14.9	0.0	0.039	13.9	0.0	1.6	1	1	0	1	1	1	0	PaaX-like	protein
MarR	PF01047.17	gi|146303649|ref|YP_001190965.1|	-	0.032	13.9	0.0	0.21	11.2	0.0	2.0	2	0	0	2	2	2	0	MarR	family
HTH_34	PF13601.1	gi|146303649|ref|YP_001190965.1|	-	0.064	13.2	0.2	0.21	11.6	0.0	2.0	2	1	0	2	2	2	0	Winged	helix	DNA-binding	domain
DUF1495	PF07381.6	gi|146303649|ref|YP_001190965.1|	-	0.069	12.8	0.0	0.15	11.7	0.0	1.5	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain	(DUF1495)
FUR	PF01475.14	gi|146303649|ref|YP_001190965.1|	-	0.077	12.9	0.0	0.12	12.3	0.0	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
DUF3116	PF11313.3	gi|146303649|ref|YP_001190965.1|	-	0.081	12.5	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
ABC_tran	PF00005.22	gi|146303650|ref|YP_001190966.1|	-	9.6e-28	97.1	0.0	1.6e-27	96.5	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303650|ref|YP_001190966.1|	-	4.7e-14	53.0	0.0	1.5e-08	35.0	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303650|ref|YP_001190966.1|	-	1.7e-05	24.1	0.0	0.053	12.5	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146303650|ref|YP_001190966.1|	-	8.2e-05	22.0	0.0	0.00016	21.0	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|146303650|ref|YP_001190966.1|	-	0.005	16.8	0.1	0.014	15.3	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|146303650|ref|YP_001190966.1|	-	0.0078	15.4	0.1	0.013	14.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|146303650|ref|YP_001190966.1|	-	0.0078	16.5	0.0	0.0099	16.2	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
UPF0079	PF02367.12	gi|146303650|ref|YP_001190966.1|	-	0.018	14.6	0.0	0.041	13.5	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_17	PF13207.1	gi|146303650|ref|YP_001190966.1|	-	0.056	14.2	0.0	0.3	11.9	0.0	2.0	2	1	0	2	2	2	0	AAA	domain
AAA_5	PF07728.9	gi|146303650|ref|YP_001190966.1|	-	0.065	12.9	0.1	0.62	9.7	0.0	2.2	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SMC_N	PF02463.14	gi|146303650|ref|YP_001190966.1|	-	0.066	12.4	0.0	3.6	6.7	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
ABC2_membrane	PF01061.19	gi|146303651|ref|YP_001190967.1|	-	7.9e-11	41.5	25.0	7.9e-11	41.5	17.3	2.0	2	1	0	2	2	2	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.2	gi|146303651|ref|YP_001190967.1|	-	6.5e-05	22.1	25.2	8.6e-05	21.7	17.5	1.2	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
DUF488	PF04343.8	gi|146303652|ref|YP_001190968.1|	-	4.3e-34	117.5	0.9	5e-34	117.3	0.7	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF488
AA_permease_2	PF13520.1	gi|146303653|ref|YP_001190969.1|	-	1.4e-09	37.0	65.0	2.1e-09	36.4	45.0	1.3	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303653|ref|YP_001190969.1|	-	2.4e-07	29.4	52.9	3.7e-07	28.8	36.7	1.3	1	0	0	1	1	1	1	Amino	acid	permease
S1FA	PF04689.8	gi|146303653|ref|YP_001190969.1|	-	0.76	9.6	2.8	1.4	8.8	0.1	2.9	2	0	0	2	2	2	0	DNA	binding	protein	S1FA
Amidinotransf	PF02274.12	gi|146303654|ref|YP_001190970.1|	-	4.4e-45	153.9	0.0	5.7e-45	153.5	0.0	1.1	1	0	0	1	1	1	1	Amidinotransferase
Cep57_CLD_2	PF14197.1	gi|146303654|ref|YP_001190970.1|	-	0.65	9.9	5.1	0.3	11.0	1.7	1.8	2	0	0	2	2	2	0	Centrosome	localisation	domain	of	PPC89
Metallophos_2	PF12850.2	gi|146303655|ref|YP_001190971.1|	-	3.1e-10	40.1	0.0	3.6e-09	36.6	0.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|146303655|ref|YP_001190971.1|	-	1.3e-08	34.5	0.0	5.3e-08	32.4	0.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_3	PF14582.1	gi|146303655|ref|YP_001190971.1|	-	1.2e-07	31.2	0.3	2.4e-05	23.6	0.2	2.9	2	1	0	2	2	2	2	Metallophosphoesterase,	calcineurin	superfamily
NAD_Gly3P_dh_N	PF01210.18	gi|146303655|ref|YP_001190971.1|	-	0.15	11.7	0.0	0.35	10.6	0.0	1.5	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Metallophos_2	PF12850.2	gi|146303656|ref|YP_001190972.1|	-	9.2e-10	38.5	0.0	5.5e-08	32.8	0.0	2.1	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos_3	PF14582.1	gi|146303656|ref|YP_001190972.1|	-	3.4e-06	26.4	0.0	4.4e-05	22.7	0.1	2.2	2	0	0	2	2	2	1	Metallophosphoesterase,	calcineurin	superfamily
Metallophos	PF00149.23	gi|146303656|ref|YP_001190972.1|	-	6.5e-05	22.4	1.7	0.0016	17.8	1.2	2.3	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Alpha-E	PF04168.7	gi|146303657|ref|YP_001190973.1|	-	2.1e-05	24.0	0.3	9.4e-05	21.9	0.1	1.8	1	1	1	2	2	2	1	A	predicted	alpha-helical	domain	with	a	conserved	ER	motif.
Transglut_core	PF01841.14	gi|146303658|ref|YP_001190974.1|	-	1.6e-22	79.8	0.0	2.8e-22	79.0	0.0	1.4	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Bact_transglu_N	PF08379.5	gi|146303658|ref|YP_001190974.1|	-	3.8e-15	55.9	0.4	7.2e-15	55.0	0.3	1.5	1	0	0	1	1	1	1	Bacterial	transglutaminase-like	N-terminal	region
DUF553	PF04473.7	gi|146303658|ref|YP_001190974.1|	-	6.5e-07	28.7	0.0	1.2e-06	27.8	0.0	1.5	1	1	0	1	1	1	1	Transglutaminase-like	domain
Transglut_core3	PF13471.1	gi|146303658|ref|YP_001190974.1|	-	1.9e-05	24.4	0.0	2.8e-05	23.9	0.0	1.3	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
CP_ATPgrasp_1	PF04174.8	gi|146303659|ref|YP_001190975.1|	-	4.6e-83	278.5	0.0	5.6e-83	278.2	0.0	1.1	1	0	0	1	1	1	1	A	circularly	permuted	ATPgrasp
CP_ATPgrasp_2	PF14403.1	gi|146303659|ref|YP_001190975.1|	-	9.3e-10	37.7	0.0	5.2e-09	35.2	0.0	1.9	1	1	0	1	1	1	1	Circularly	permuted	ATP-grasp	type	2
ATPgrasp_ST	PF14397.1	gi|146303659|ref|YP_001190975.1|	-	4.3e-05	22.7	0.1	8e-05	21.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-transfer	associated	ATP-grasp
ATP-grasp_3	PF02655.9	gi|146303659|ref|YP_001190975.1|	-	0.0047	16.8	1.1	0.71	9.7	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146303659|ref|YP_001190975.1|	-	0.015	14.0	0.0	1.3	7.7	0.0	2.3	2	0	0	2	2	2	0	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
GSH-S_ATP	PF02955.11	gi|146303659|ref|YP_001190975.1|	-	0.064	12.3	0.1	0.23	10.5	0.0	1.9	2	0	0	2	2	2	0	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
NIR_SIR	PF01077.17	gi|146303660|ref|YP_001190976.1|	-	8.4e-26	90.2	0.7	1e-15	57.4	0.0	2.5	2	0	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|146303660|ref|YP_001190976.1|	-	1.4e-10	40.5	0.1	3.7e-07	29.6	0.0	3.2	3	0	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
DGC	PF08859.6	gi|146303660|ref|YP_001190976.1|	-	0.12	12.2	0.2	0.35	10.7	0.2	1.7	1	0	0	1	1	1	0	DGC	domain
MFS_1	PF07690.11	gi|146303661|ref|YP_001190977.1|	-	2e-41	141.8	77.1	3.5e-29	101.6	30.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303661|ref|YP_001190977.1|	-	0.00049	18.8	37.1	0.0011	17.6	10.3	2.1	2	0	0	2	2	2	2	Sugar	(and	other)	transporter
OATP	PF03137.15	gi|146303661|ref|YP_001190977.1|	-	0.027	12.5	5.4	0.036	12.1	0.1	2.3	2	1	0	2	2	2	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Molybdopterin	PF00384.17	gi|146303662|ref|YP_001190978.1|	-	9.2e-62	209.1	0.0	1.1e-61	208.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|146303662|ref|YP_001190978.1|	-	3.6e-20	71.8	0.0	8.7e-20	70.5	0.0	1.7	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|146303662|ref|YP_001190978.1|	-	4.1e-08	32.9	2.6	2e-07	30.7	1.8	2.1	1	1	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
UBA_2	PF08587.6	gi|146303662|ref|YP_001190978.1|	-	0.1	12.8	0.0	6.7	6.9	0.0	2.5	2	0	0	2	2	2	0	Ubiquitin	associated	domain	(UBA)
UreD	PF01774.12	gi|146303663|ref|YP_001190979.1|	-	1.5e-12	47.4	0.0	2e-12	47.0	0.0	1.2	1	0	0	1	1	1	1	UreD	urease	accessory	protein
cobW	PF02492.14	gi|146303664|ref|YP_001190980.1|	-	9.8e-31	106.5	0.0	1.1e-30	106.3	0.0	1.0	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
ArgK	PF03308.11	gi|146303664|ref|YP_001190980.1|	-	2.2e-09	36.5	0.1	3.5e-09	35.8	0.0	1.3	1	1	0	1	1	1	1	ArgK	protein
MobB	PF03205.9	gi|146303664|ref|YP_001190980.1|	-	1.9e-05	24.3	0.0	3.1e-05	23.7	0.0	1.5	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_17	PF13207.1	gi|146303664|ref|YP_001190980.1|	-	0.00019	22.2	0.2	0.0003	21.5	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|146303664|ref|YP_001190980.1|	-	0.00044	20.5	0.0	0.00073	19.8	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_10	PF12846.2	gi|146303664|ref|YP_001190980.1|	-	0.00077	18.9	0.0	0.00086	18.8	0.0	1.2	1	0	0	1	1	1	1	AAA-like	domain
GTP_EFTU	PF00009.22	gi|146303664|ref|YP_001190980.1|	-	0.00094	18.6	0.0	1.3	8.3	0.0	2.5	2	1	0	2	2	2	2	Elongation	factor	Tu	GTP	binding	domain
LpxK	PF02606.9	gi|146303664|ref|YP_001190980.1|	-	0.0011	17.9	0.1	0.0016	17.4	0.0	1.2	1	0	0	1	1	1	1	Tetraacyldisaccharide-1-P	4'-kinase
SRP54	PF00448.17	gi|146303664|ref|YP_001190980.1|	-	0.0026	17.2	0.0	0.0053	16.2	0.0	1.5	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|146303664|ref|YP_001190980.1|	-	0.0045	17.1	0.0	0.014	15.5	0.0	1.9	2	1	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|146303664|ref|YP_001190980.1|	-	0.01	16.1	0.1	0.016	15.4	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
Miro	PF08477.8	gi|146303664|ref|YP_001190980.1|	-	0.01	16.3	0.0	0.03	14.8	0.0	1.8	2	0	0	2	2	2	0	Miro-like	protein
NTPase_1	PF03266.10	gi|146303664|ref|YP_001190980.1|	-	0.013	15.1	0.0	0.018	14.7	0.0	1.4	1	0	0	1	1	1	0	NTPase
UPF0079	PF02367.12	gi|146303664|ref|YP_001190980.1|	-	0.017	14.7	0.0	0.027	14.0	0.0	1.4	1	1	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
KAP_NTPase	PF07693.9	gi|146303664|ref|YP_001190980.1|	-	0.02	13.8	0.0	0.02	13.8	0.0	1.1	1	0	0	1	1	1	0	KAP	family	P-loop	domain
AAA	PF00004.24	gi|146303664|ref|YP_001190980.1|	-	0.036	14.2	0.0	0.057	13.6	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|146303664|ref|YP_001190980.1|	-	0.048	13.6	0.0	0.075	13.0	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
Thymidylate_kin	PF02223.12	gi|146303664|ref|YP_001190980.1|	-	0.05	12.9	0.0	0.15	11.3	0.0	1.8	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_24	PF13479.1	gi|146303664|ref|YP_001190980.1|	-	0.065	12.7	0.2	0.14	11.7	0.1	1.8	1	1	0	1	1	1	0	AAA	domain
ATP_bind_1	PF03029.12	gi|146303664|ref|YP_001190980.1|	-	0.089	12.3	0.1	0.31	10.5	0.0	1.9	3	0	0	3	3	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_28	PF13521.1	gi|146303664|ref|YP_001190980.1|	-	0.089	12.7	0.0	0.19	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|146303664|ref|YP_001190980.1|	-	0.1	12.0	0.0	0.67	9.4	0.0	2.0	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Arch_ATPase	PF01637.13	gi|146303664|ref|YP_001190980.1|	-	0.11	12.2	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
MMR_HSR1	PF01926.18	gi|146303664|ref|YP_001190980.1|	-	0.11	12.4	0.1	0.25	11.2	0.1	1.9	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|146303664|ref|YP_001190980.1|	-	0.11	12.8	0.2	0.55	10.5	0.1	1.9	2	0	0	2	2	2	0	AAA	domain
UreF	PF01730.11	gi|146303665|ref|YP_001190981.1|	-	1.6e-16	60.6	0.0	1.9e-16	60.4	0.0	1.1	1	0	0	1	1	1	1	UreF
UreE_C	PF05194.7	gi|146303666|ref|YP_001190982.1|	-	5.5e-06	26.3	0.0	8.1e-06	25.8	0.0	1.3	1	0	0	1	1	1	1	UreE	urease	accessory	protein,	C-terminal	domain
Amidohydro_1	PF01979.15	gi|146303667|ref|YP_001190983.1|	-	2.2e-49	168.9	0.4	2.8e-49	168.5	0.3	1.1	1	0	0	1	1	1	1	Amidohydrolase	family
Urease_alpha	PF00449.15	gi|146303667|ref|YP_001190983.1|	-	3.3e-47	159.5	1.4	6e-47	158.7	1.0	1.5	1	0	0	1	1	1	1	Urease	alpha-subunit,	N-terminal	domain
Amidohydro_5	PF13594.1	gi|146303667|ref|YP_001190983.1|	-	1.2e-10	41.0	2.4	4.7e-10	39.1	1.7	2.1	1	1	0	1	1	1	1	Amidohydrolase
Amidohydro_4	PF13147.1	gi|146303667|ref|YP_001190983.1|	-	1.2e-06	28.7	1.0	0.00056	20.0	0.5	3.3	2	1	1	3	3	3	2	Amidohydrolase
Amidohydro_3	PF07969.6	gi|146303667|ref|YP_001190983.1|	-	4.5e-05	22.8	4.1	0.0011	18.3	0.2	2.4	1	1	1	2	2	2	2	Amidohydrolase	family
Urease_gamma	PF00547.13	gi|146303668|ref|YP_001190984.1|	-	9.9e-41	137.7	0.7	1.8e-40	136.9	0.5	1.4	1	0	0	1	1	1	1	Urease,	gamma	subunit
Urease_beta	PF00699.15	gi|146303668|ref|YP_001190984.1|	-	3.8e-39	132.5	0.2	9.9e-39	131.2	0.0	1.7	2	0	0	2	2	2	1	Urease	beta	subunit
AA_permease_2	PF13520.1	gi|146303669|ref|YP_001190985.1|	-	3.3e-30	104.9	56.6	6.8e-30	103.9	39.3	1.5	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303669|ref|YP_001190985.1|	-	7.2e-18	64.1	49.8	1.3e-17	63.2	34.5	1.5	1	1	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.8	gi|146303669|ref|YP_001190985.1|	-	2.7e-08	32.8	19.1	2.7e-08	32.8	13.2	2.7	2	2	0	2	2	2	1	Spore	germination	protein
Lactamase_B	PF00753.22	gi|146303670|ref|YP_001190986.1|	-	9.7e-25	87.3	0.1	1.2e-24	87.0	0.1	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146303670|ref|YP_001190986.1|	-	6.2e-05	22.6	0.0	8.9e-05	22.1	0.0	1.5	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|146303670|ref|YP_001190986.1|	-	0.0014	18.3	0.0	0.0029	17.3	0.0	1.4	1	1	0	1	1	1	1	Beta-lactamase	superfamily	domain
MFS_1	PF07690.11	gi|146303671|ref|YP_001190987.1|	-	1.3e-57	195.0	52.3	1.1e-56	192.0	33.6	2.2	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303671|ref|YP_001190987.1|	-	9.6e-08	31.0	15.4	9.6e-08	31.0	10.7	3.3	2	1	1	3	3	3	2	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|146303671|ref|YP_001190987.1|	-	1e-06	27.1	10.6	1e-06	27.1	7.4	2.3	2	0	0	2	2	2	2	Transmembrane	secretion	effector
MFS_2	PF13347.1	gi|146303671|ref|YP_001190987.1|	-	9.8e-05	20.9	16.2	9.8e-05	20.9	11.3	3.5	2	1	1	3	3	3	2	MFS/sugar	transport	protein
Aminotran_1_2	PF00155.16	gi|146303672|ref|YP_001190988.1|	-	5.9e-29	101.1	0.0	7e-29	100.8	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
SpoOE-like	PF09388.5	gi|146303672|ref|YP_001190988.1|	-	0.26	10.8	1.2	19	4.8	0.0	3.8	5	0	0	5	5	5	0	Spo0E	like	sporulation	regulatory	protein
AIM24	PF01987.12	gi|146303673|ref|YP_001190989.1|	-	2.2e-57	193.9	2.5	2.6e-57	193.7	1.7	1.0	1	0	0	1	1	1	1	Mitochondrial	biogenesis	AIM24
TusA	PF01206.12	gi|146303674|ref|YP_001190990.1|	-	2e-19	68.9	0.2	2.4e-19	68.6	0.1	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|146303674|ref|YP_001190990.1|	-	2.9e-06	26.7	0.0	4e-06	26.2	0.0	1.4	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
SpoA	PF01052.15	gi|146303674|ref|YP_001190990.1|	-	0.022	14.3	0.1	0.75	9.4	0.0	2.1	1	1	1	2	2	2	0	Surface	presentation	of	antigens	(SPOA)
Cupin_2	PF07883.6	gi|146303675|ref|YP_001190991.1|	-	1.2e-15	56.7	0.4	1.5e-15	56.4	0.3	1.2	1	0	0	1	1	1	1	Cupin	domain
MannoseP_isomer	PF01050.13	gi|146303675|ref|YP_001190991.1|	-	7.2e-08	32.1	0.1	7.7e-08	32.0	0.1	1.2	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
AraC_binding	PF02311.14	gi|146303675|ref|YP_001190991.1|	-	2e-07	30.7	0.7	2.8e-07	30.2	0.5	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_6	PF12852.2	gi|146303675|ref|YP_001190991.1|	-	0.00039	20.0	0.0	0.00046	19.8	0.0	1.1	1	0	0	1	1	1	1	Cupin
Cupin_1	PF00190.17	gi|146303675|ref|YP_001190991.1|	-	0.00086	18.7	0.0	0.0012	18.2	0.0	1.2	1	0	0	1	1	1	1	Cupin
Cupin_3	PF05899.7	gi|146303675|ref|YP_001190991.1|	-	0.0027	17.0	0.1	0.0041	16.4	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Ectoine_synth	PF06339.7	gi|146303675|ref|YP_001190991.1|	-	0.045	13.6	0.2	0.053	13.4	0.1	1.1	1	0	0	1	1	1	0	Ectoine	synthase
B12-binding	PF02310.14	gi|146303676|ref|YP_001190992.1|	-	0.022	14.6	0.0	0.042	13.7	0.0	1.4	1	0	0	1	1	1	0	B12	binding	domain
Herpes_IR6	PF06307.7	gi|146303676|ref|YP_001190992.1|	-	0.12	11.6	0.2	0.23	10.7	0.1	1.3	1	0	0	1	1	1	0	Herpesvirus	IR6	protein
DUF504	PF04457.7	gi|146303677|ref|YP_001190993.1|	-	3.6e-18	65.4	1.8	3.6e-18	65.4	1.3	1.8	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF504)
FAINT	PF04385.10	gi|146303677|ref|YP_001190993.1|	-	0.0043	16.8	0.4	2.3	8.1	0.0	2.4	3	0	0	3	3	3	2	Domain	of	unknown	function,	DUF529
TBPIP_N	PF15517.1	gi|146303677|ref|YP_001190993.1|	-	0.072	12.7	0.2	0.1	12.2	0.1	1.3	1	1	0	1	1	1	0	TBP-interacting	protein	N-terminus
RHH_1	PF01402.16	gi|146303678|ref|YP_001190994.1|	-	1.7e-07	30.8	4.1	1.1e-06	28.2	0.4	2.3	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
CcdA	PF07362.7	gi|146303678|ref|YP_001190994.1|	-	1.8e-07	30.8	0.8	2.3e-07	30.5	0.6	1.2	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
Nup84_Nup100	PF04121.8	gi|146303678|ref|YP_001190994.1|	-	0.0042	14.8	0.9	0.0047	14.6	0.6	1.0	1	0	0	1	1	1	1	Nuclear	pore	protein	84	/	107
HTH_AsnC-type	PF13404.1	gi|146303678|ref|YP_001190994.1|	-	0.012	15.1	4.4	0.054	13.0	0.7	2.4	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
CRF	PF00473.12	gi|146303678|ref|YP_001190994.1|	-	0.04	14.0	3.3	0.04	14.0	2.3	1.6	2	0	0	2	2	2	0	Corticotropin-releasing	factor	family
Rho_N	PF07498.7	gi|146303678|ref|YP_001190994.1|	-	0.072	12.8	0.1	0.11	12.2	0.1	1.5	1	0	0	1	1	1	0	Rho	termination	factor,	N-terminal	domain
HTH_11	PF08279.7	gi|146303678|ref|YP_001190994.1|	-	0.085	12.5	0.6	0.19	11.3	0.3	1.7	2	0	0	2	2	2	0	HTH	domain
Hypoth_Ymh	PF09509.5	gi|146303678|ref|YP_001190994.1|	-	0.11	12.1	0.1	0.13	11.9	0.1	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(Hypoth_ymh)
DUF2258	PF10015.4	gi|146303678|ref|YP_001190994.1|	-	0.14	12.0	2.7	0.5	10.1	1.9	1.9	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
Ribosomal_L32e	PF01655.13	gi|146303678|ref|YP_001190994.1|	-	0.2	11.6	1.6	0.79	9.8	0.0	2.1	2	0	0	2	2	2	0	Ribosomal	protein	L32
Histone_HNS	PF00816.16	gi|146303678|ref|YP_001190994.1|	-	0.21	12.0	1.3	0.84	10.1	0.3	1.9	1	1	1	2	2	2	0	H-NS	histone	family
RP-C	PF03428.8	gi|146303678|ref|YP_001190994.1|	-	0.29	10.5	4.5	0.32	10.4	3.1	1.1	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
PIN	PF01850.16	gi|146303679|ref|YP_001190995.1|	-	4.5e-07	30.2	0.5	5.7e-07	29.9	0.4	1.1	1	0	0	1	1	1	1	PIN	domain
GRIM-19	PF06212.7	gi|146303681|ref|YP_001190997.1|	-	0.12	12.0	0.0	0.15	11.7	0.0	1.1	1	0	0	1	1	1	0	GRIM-19	protein
DUF973	PF06157.6	gi|146303682|ref|YP_001190998.1|	-	4.2e-46	157.1	23.2	4.9e-46	156.9	16.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF973)
Cation_efflux	PF01545.16	gi|146303683|ref|YP_001190999.1|	-	2.6e-42	144.8	9.2	2.9e-42	144.6	6.4	1.0	1	0	0	1	1	1	1	Cation	efflux	family
UPF0154	PF03672.8	gi|146303683|ref|YP_001190999.1|	-	0.18	11.4	0.4	0.51	9.9	0.3	1.8	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0154)
DUF4231	PF14015.1	gi|146303683|ref|YP_001190999.1|	-	3.8	7.5	11.4	3	7.8	2.5	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4231)
DUF3494	PF11999.3	gi|146303684|ref|YP_001191000.1|	-	0.084	12.4	0.0	0.12	11.9	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3494)
ADH_N	PF08240.7	gi|146303685|ref|YP_001191001.1|	-	1.5e-28	98.7	1.5	4.1e-28	97.3	1.0	1.8	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146303685|ref|YP_001191001.1|	-	5.4e-24	84.1	1.0	1.4e-23	82.8	0.7	1.7	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146303685|ref|YP_001191001.1|	-	3.6e-14	53.7	0.5	6.6e-14	52.8	0.1	1.7	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
AlaDh_PNT_C	PF01262.16	gi|146303685|ref|YP_001191001.1|	-	0.00011	21.7	1.4	0.00018	21.1	0.2	1.8	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
DapB_N	PF01113.15	gi|146303685|ref|YP_001191001.1|	-	0.00052	19.9	2.6	0.031	14.1	1.8	2.3	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
NAD_binding_10	PF13460.1	gi|146303685|ref|YP_001191001.1|	-	0.0013	18.7	0.4	0.0027	17.7	0.2	1.5	1	1	0	1	1	1	1	NADH(P)-binding
ELFV_dehydrog	PF00208.16	gi|146303685|ref|YP_001191001.1|	-	0.0066	16.0	1.1	0.011	15.3	0.6	1.5	1	1	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
NmrA	PF05368.8	gi|146303685|ref|YP_001191001.1|	-	0.032	13.4	0.1	0.053	12.7	0.1	1.4	1	0	0	1	1	1	0	NmrA-like	family
2-Hacid_dh_C	PF02826.14	gi|146303685|ref|YP_001191001.1|	-	0.033	13.3	0.1	0.062	12.4	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.16	gi|146303685|ref|YP_001191001.1|	-	0.037	13.4	0.1	0.054	12.9	0.0	1.2	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
PHD_2	PF13831.1	gi|146303685|ref|YP_001191001.1|	-	0.23	10.7	0.1	0.23	10.7	0.0	1.8	2	0	0	2	2	2	0	PHD-finger
ThiC	PF01964.13	gi|146303686|ref|YP_001191002.1|	-	5e-181	601.8	0.0	5.9e-181	601.5	0.0	1.0	1	0	0	1	1	1	1	ThiC	family
DapB_N	PF01113.15	gi|146303686|ref|YP_001191002.1|	-	0.028	14.3	0.0	0.053	13.4	0.0	1.5	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
MFS_1	PF07690.11	gi|146303687|ref|YP_001191003.1|	-	1.1e-50	172.3	42.6	1.1e-50	172.3	29.5	2.2	1	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303687|ref|YP_001191003.1|	-	1.1e-09	37.4	11.8	1.1e-09	37.4	8.2	3.1	3	0	0	3	3	3	2	Sugar	(and	other)	transporter
Peptidase_M50	PF02163.17	gi|146303687|ref|YP_001191003.1|	-	0.022	13.7	0.1	0.17	10.8	0.1	2.8	1	1	0	1	1	1	0	Peptidase	family	M50
ATPase_gene1	PF09527.5	gi|146303687|ref|YP_001191003.1|	-	0.022	14.5	2.3	0.022	14.5	1.6	5.0	8	1	0	8	8	8	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
PIN	PF01850.16	gi|146303688|ref|YP_001191004.1|	-	8.8e-12	45.4	0.0	1.3e-11	44.8	0.0	1.3	1	1	0	1	1	1	1	PIN	domain
RHH_1	PF01402.16	gi|146303689|ref|YP_001191005.1|	-	0.00077	19.2	1.7	0.17	11.8	0.2	2.2	2	0	0	2	2	2	2	Ribbon-helix-helix	protein,	copG	family
Methyltransf_23	PF13489.1	gi|146303690|ref|YP_001191006.1|	-	2.4e-13	50.0	0.0	4.5e-13	49.2	0.0	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303690|ref|YP_001191006.1|	-	3.4e-13	49.8	0.0	6.9e-13	48.9	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146303690|ref|YP_001191006.1|	-	4.2e-09	36.1	0.0	3.8e-08	33.0	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303690|ref|YP_001191006.1|	-	1.6e-08	34.9	0.2	1.3e-07	31.9	0.1	2.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303690|ref|YP_001191006.1|	-	8.3e-07	29.5	0.1	4.3e-06	27.2	0.1	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|146303690|ref|YP_001191006.1|	-	1.1e-06	28.2	0.0	1.7e-06	27.5	0.0	1.3	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_9	PF08003.6	gi|146303690|ref|YP_001191006.1|	-	6.3e-05	21.8	0.1	0.00042	19.1	0.0	2.0	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1698)
MTS	PF05175.9	gi|146303690|ref|YP_001191006.1|	-	0.00087	18.7	0.1	0.016	14.5	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	small	domain
Ubie_methyltran	PF01209.13	gi|146303690|ref|YP_001191006.1|	-	0.032	13.3	0.0	0.15	11.1	0.0	2.1	2	1	0	2	2	2	0	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|146303690|ref|YP_001191006.1|	-	0.048	14.0	0.2	0.89	9.9	0.1	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
Methyltransf_29	PF03141.11	gi|146303690|ref|YP_001191006.1|	-	0.062	11.6	0.0	0.34	9.1	0.0	1.9	1	1	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
Biotin_carb_C	PF02785.14	gi|146303690|ref|YP_001191006.1|	-	0.12	12.4	0.0	0.22	11.5	0.0	1.4	1	0	0	1	1	1	0	Biotin	carboxylase	C-terminal	domain
Methyltransf_26	PF13659.1	gi|146303690|ref|YP_001191006.1|	-	0.16	12.0	0.1	1.2	9.2	0.1	2.1	1	1	0	1	1	1	0	Methyltransferase	domain
Glyco_hydro_31	PF01055.21	gi|146303691|ref|YP_001191007.1|	-	1.1e-136	456.2	0.3	1.3e-136	455.9	0.2	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
Gal_mutarotas_2	PF13802.1	gi|146303691|ref|YP_001191007.1|	-	3.5e-16	58.8	0.2	8.5e-16	57.5	0.1	1.7	1	0	0	1	1	1	1	Galactose	mutarotase-like
CBM_48	PF02922.13	gi|146303692|ref|YP_001191008.1|	-	1.1e-13	51.0	0.0	1.2e-13	50.8	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate-binding	module	48	(Isoamylase	N-terminal	domain)
HypA	PF01155.14	gi|146303693|ref|YP_001191009.1|	-	5e-25	87.3	0.0	5.7e-25	87.1	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	expression/synthesis	hypA	family
zf-ISL3	PF14690.1	gi|146303693|ref|YP_001191009.1|	-	0.0028	17.6	0.1	0.3	11.1	0.0	2.3	2	0	0	2	2	2	1	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Zn_Tnp_IS1595	PF12760.2	gi|146303693|ref|YP_001191009.1|	-	0.0034	17.1	0.3	1.5	8.6	0.1	2.2	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|146303693|ref|YP_001191009.1|	-	0.0057	16.9	0.1	1.3	9.3	0.0	2.2	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
Zn-ribbon_8	PF09723.5	gi|146303693|ref|YP_001191009.1|	-	0.0061	16.4	0.3	1.7	8.6	0.0	2.3	2	0	0	2	2	2	1	Zinc	ribbon	domain
zf-ribbon_3	PF13248.1	gi|146303693|ref|YP_001191009.1|	-	0.012	14.7	1.1	0.68	9.2	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146303693|ref|YP_001191009.1|	-	0.016	14.7	0.7	2.7	7.6	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|146303693|ref|YP_001191009.1|	-	0.023	14.3	0.6	3.4	7.4	0.0	2.4	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-RING_3	PF14369.1	gi|146303693|ref|YP_001191009.1|	-	0.026	14.5	0.7	7.3	6.6	0.1	2.3	2	0	0	2	2	2	0	zinc-finger
zf-HYPF	PF07503.7	gi|146303693|ref|YP_001191009.1|	-	0.03	13.7	1.3	1	8.8	0.0	2.3	2	0	0	2	2	2	0	HypF	finger
DNA_RNApol_7kD	PF03604.8	gi|146303693|ref|YP_001191009.1|	-	0.079	12.4	0.5	14	5.2	0.1	2.4	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_ribbon_recom	PF13408.1	gi|146303693|ref|YP_001191009.1|	-	0.11	12.7	0.6	11	6.4	0.1	2.4	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
Tmemb_55A	PF09788.4	gi|146303693|ref|YP_001191009.1|	-	0.13	11.4	0.1	0.16	11.0	0.0	1.1	1	0	0	1	1	1	0	Transmembrane	protein	55A
zf-IS66	PF13005.2	gi|146303693|ref|YP_001191009.1|	-	0.13	12.2	0.9	3.5	7.6	0.2	2.4	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
zf-C2H2_4	PF13894.1	gi|146303693|ref|YP_001191009.1|	-	0.15	12.4	1.1	7.8	7.0	0.0	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
zinc_ribbon_2	PF13240.1	gi|146303693|ref|YP_001191009.1|	-	0.17	11.4	4.0	0.45	10.0	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146303693|ref|YP_001191009.1|	-	0.27	10.5	3.2	7.3	5.9	0.6	2.5	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-C2H2	PF00096.21	gi|146303693|ref|YP_001191009.1|	-	1.4	9.4	5.2	4.2	7.8	0.5	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-C2H2_6	PF13912.1	gi|146303693|ref|YP_001191009.1|	-	1.4	8.8	7.1	0.44	10.5	1.1	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
CbiA	PF01656.18	gi|146303694|ref|YP_001191010.1|	-	5.5e-16	58.5	0.0	6.4e-16	58.3	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ParA	PF10609.4	gi|146303694|ref|YP_001191010.1|	-	1.6e-09	37.5	0.0	3.5e-09	36.4	0.0	1.6	1	0	0	1	1	1	1	ParA/MinD	ATPase	like
AAA_31	PF13614.1	gi|146303694|ref|YP_001191010.1|	-	3.3e-08	33.6	0.1	9.7e-07	28.8	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303694|ref|YP_001191010.1|	-	4.6e-05	22.6	0.4	0.00069	18.7	0.1	2.6	1	1	2	3	3	3	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146303694|ref|YP_001191010.1|	-	0.0065	15.5	0.1	0.02	13.9	0.0	1.7	1	1	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|146303694|ref|YP_001191010.1|	-	0.16	11.3	0.0	1.1	8.5	0.0	2.0	1	1	0	1	1	1	0	YhjQ	protein
Sua5_yciO_yrdC	PF01300.13	gi|146303695|ref|YP_001191011.1|	-	6.9e-49	165.5	0.0	2.1e-48	163.9	0.0	1.8	2	0	0	2	2	2	1	Telomere	recombination
zf-HYPF	PF07503.7	gi|146303695|ref|YP_001191011.1|	-	1.5e-32	110.6	13.9	1.2e-16	59.8	2.3	2.4	2	0	0	2	2	2	2	HypF	finger
Acylphosphatase	PF00708.13	gi|146303695|ref|YP_001191011.1|	-	9.9e-19	67.2	0.0	2e-18	66.2	0.0	1.5	1	0	0	1	1	1	1	Acylphosphatase
Peptidase_M22	PF00814.20	gi|146303695|ref|YP_001191011.1|	-	1.5e-06	27.9	0.0	0.00012	21.6	0.0	2.1	2	0	0	2	2	2	2	Glycoprotease	family
HycI	PF01750.13	gi|146303696|ref|YP_001191012.1|	-	1.4e-10	40.8	0.4	5.2e-10	38.9	0.3	1.8	1	1	0	1	1	1	1	Hydrogenase	maturation	protease
HupF_HypC	PF01455.13	gi|146303697|ref|YP_001191013.1|	-	1.7e-16	59.9	0.2	1.9e-16	59.7	0.1	1.0	1	0	0	1	1	1	1	HupF/HypC	family
GcpE	PF04551.9	gi|146303697|ref|YP_001191013.1|	-	0.03	13.1	0.2	0.065	12.0	0.1	1.5	1	1	0	1	1	1	0	GcpE	protein
HupF_HypC	PF01455.13	gi|146303698|ref|YP_001191014.1|	-	3.8e-17	62.0	0.0	4.4e-17	61.8	0.0	1.1	1	0	0	1	1	1	1	HupF/HypC	family
Strep_SA_rep	PF06696.6	gi|146303698|ref|YP_001191014.1|	-	0.13	12.0	0.1	0.2	11.4	0.1	1.3	1	0	0	1	1	1	0	Streptococcal	surface	antigen	repeat
DUF3463	PF11946.3	gi|146303699|ref|YP_001191015.1|	-	3.8e-28	97.8	3.2	5.4e-28	97.3	2.2	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF3463)
Radical_SAM	PF04055.16	gi|146303699|ref|YP_001191015.1|	-	8e-19	68.4	0.1	1.8e-18	67.2	0.0	1.6	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146303699|ref|YP_001191015.1|	-	5.4e-07	29.8	0.1	8.2e-06	25.9	0.0	2.3	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_14	PF13394.1	gi|146303699|ref|YP_001191015.1|	-	3.7e-05	23.7	0.0	0.00012	22.0	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
NiFeSe_Hases	PF00374.14	gi|146303700|ref|YP_001191016.1|	-	9e-17	61.0	0.0	3.9e-10	39.1	0.0	3.1	3	0	0	3	3	3	3	Nickel-dependent	hydrogenase
HemN_C	PF06969.11	gi|146303701|ref|YP_001191017.1|	-	2.9e-08	33.6	0.5	0.00066	19.6	0.1	2.4	2	0	0	2	2	2	2	HemN	C-terminal	domain
HTH_45	PF14947.1	gi|146303701|ref|YP_001191017.1|	-	1.3e-06	28.0	2.4	0.0037	17.0	0.2	2.2	2	0	0	2	2	2	2	Winged	helix-turn-helix
HTH_27	PF13463.1	gi|146303701|ref|YP_001191017.1|	-	0.006	16.8	0.1	0.21	11.9	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
SelB-wing_2	PF09106.6	gi|146303701|ref|YP_001191017.1|	-	0.036	13.9	0.1	1.2	9.0	0.0	2.4	2	0	0	2	2	2	0	Elongation	factor	SelB,	winged	helix
DUF4357	PF14267.1	gi|146303701|ref|YP_001191017.1|	-	0.073	12.6	0.5	0.35	10.5	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4357)
MarR_2	PF12802.2	gi|146303701|ref|YP_001191017.1|	-	0.096	12.3	0.5	21	4.8	0.0	3.0	3	0	0	3	3	3	0	MarR	family
DUF2250	PF10007.4	gi|146303701|ref|YP_001191017.1|	-	0.3	11.0	1.8	1.6	8.6	0.2	2.2	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
NiFeSe_Hases	PF00374.14	gi|146303703|ref|YP_001191019.1|	-	1.8e-64	218.4	0.2	1.2e-44	152.9	0.1	3.2	2	1	0	2	2	2	2	Nickel-dependent	hydrogenase
Oxidored_q6	PF01058.17	gi|146303704|ref|YP_001191020.1|	-	2.4e-32	111.3	0.0	3.7e-32	110.7	0.0	1.3	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
NiFe_hyd_SSU_C	PF14720.1	gi|146303704|ref|YP_001191020.1|	-	3.4e-23	81.4	5.6	5.2e-23	80.8	3.8	1.3	1	0	0	1	1	1	1	NiFe/NiFeSe	hydrogenase	small	subunit	C-terminal
DUF771	PF05595.6	gi|146303704|ref|YP_001191020.1|	-	0.009	15.9	0.0	1.5	8.8	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF771)
DUF1641	PF07849.6	gi|146303705|ref|YP_001191021.1|	-	0.00075	19.0	0.0	0.0021	17.6	0.0	1.8	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1641)
Peptidase_M42	PF05343.9	gi|146303705|ref|YP_001191021.1|	-	0.068	11.9	0.1	0.097	11.4	0.1	1.2	1	0	0	1	1	1	0	M42	glutamyl	aminopeptidase
RLL	PF10036.4	gi|146303705|ref|YP_001191021.1|	-	0.086	12.2	0.1	0.09	12.1	0.0	1.1	1	0	0	1	1	1	0	Putative	carnitine	deficiency-associated	protein
Tape_meas_lam_C	PF09718.5	gi|146303705|ref|YP_001191021.1|	-	0.11	12.4	0.1	0.36	10.7	0.0	1.8	2	0	0	2	2	2	0	Lambda	phage	tail	tape-measure	protein	(Tape_meas_lam_C)
PTPA	PF03095.10	gi|146303705|ref|YP_001191021.1|	-	0.15	11.2	0.0	0.17	11.0	0.0	1.3	1	1	0	1	1	1	0	Phosphotyrosyl	phosphate	activator	(PTPA)	protein
HxlR	PF01638.12	gi|146303706|ref|YP_001191022.1|	-	5.2e-20	70.8	0.2	6.1e-20	70.6	0.2	1.1	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_34	PF13601.1	gi|146303706|ref|YP_001191022.1|	-	8.6e-06	25.7	0.1	1.1e-05	25.3	0.1	1.2	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR	PF01047.17	gi|146303706|ref|YP_001191022.1|	-	0.001	18.7	0.2	0.0023	17.6	0.1	1.5	1	0	0	1	1	1	1	MarR	family
Cdc6_C	PF09079.6	gi|146303706|ref|YP_001191022.1|	-	0.0018	17.9	0.1	0.0036	17.0	0.0	1.5	1	1	0	1	1	1	1	CDC6,	C	terminal
HTH_24	PF13412.1	gi|146303706|ref|YP_001191022.1|	-	0.003	16.9	0.3	0.0051	16.1	0.2	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|146303706|ref|YP_001191022.1|	-	0.004	16.9	0.0	0.0061	16.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
PadR	PF03551.9	gi|146303706|ref|YP_001191022.1|	-	0.014	15.1	0.0	0.024	14.3	0.0	1.5	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|146303706|ref|YP_001191022.1|	-	0.12	12.0	0.2	0.2	11.3	0.2	1.4	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
MTD	PF01993.13	gi|146303707|ref|YP_001191023.1|	-	0.043	12.8	0.1	0.045	12.7	0.1	1.1	1	0	0	1	1	1	0	methylene-5,6,7,8-tetrahydromethanopterin	dehydrogenase
DUF59	PF01883.14	gi|146303708|ref|YP_001191024.1|	-	0.031	14.2	0.0	0.042	13.8	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF59
Aldolase_II	PF00596.16	gi|146303709|ref|YP_001191025.1|	-	3.6e-43	147.3	0.0	4.1e-43	147.1	0.0	1.0	1	0	0	1	1	1	1	Class	II	Aldolase	and	Adducin	N-terminal	domain
HypD	PF01924.11	gi|146303710|ref|YP_001191026.1|	-	3.9e-127	423.8	0.0	4.4e-127	423.6	0.0	1.0	1	0	0	1	1	1	1	Hydrogenase	formation	hypA	family
HupF_HypC	PF01455.13	gi|146303711|ref|YP_001191027.1|	-	4.6e-22	77.7	0.0	5.5e-22	77.5	0.0	1.1	1	0	0	1	1	1	1	HupF/HypC	family
PhnA_Zn_Ribbon	PF08274.7	gi|146303712|ref|YP_001191028.1|	-	0.04	13.7	0.1	0.46	10.3	0.1	2.3	1	1	1	2	2	2	0	PhnA	Zinc-Ribbon
Desulfoferrod_N	PF06397.7	gi|146303712|ref|YP_001191028.1|	-	0.066	12.6	0.9	0.066	12.6	0.6	2.6	3	1	0	3	3	3	0	Desulfoferrodoxin,	N-terminal	domain
zf-FCS	PF06467.9	gi|146303712|ref|YP_001191028.1|	-	0.12	12.0	3.9	2.1	8.0	0.2	2.5	2	1	0	2	2	2	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-dskA_traR	PF01258.12	gi|146303712|ref|YP_001191028.1|	-	0.16	11.7	1.5	0.3	10.8	0.1	2.0	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
zinc-ribbons_6	PF07191.7	gi|146303712|ref|YP_001191028.1|	-	0.2	11.4	2.3	2.5	7.9	1.5	2.1	1	1	0	1	1	1	0	zinc-ribbons
YdjO	PF14169.1	gi|146303712|ref|YP_001191028.1|	-	0.25	10.8	3.4	2.2	7.8	0.1	2.6	1	1	1	2	2	2	0	Cold-inducible	protein	YdjO
YhfH	PF14149.1	gi|146303712|ref|YP_001191028.1|	-	0.25	11.1	3.2	0.6	9.9	0.8	2.2	2	0	0	2	2	2	0	YhfH-like	protein
zf-C3HC	PF07967.8	gi|146303712|ref|YP_001191028.1|	-	0.53	10.0	2.4	2.9	7.6	1.6	2.0	1	1	0	1	1	1	0	C3HC	zinc	finger-like
DZR	PF12773.2	gi|146303712|ref|YP_001191028.1|	-	0.85	9.4	3.1	3	7.7	2.1	2.1	1	1	0	1	1	1	0	Double	zinc	ribbon
zf-Sec23_Sec24	PF04810.10	gi|146303712|ref|YP_001191028.1|	-	1.4	8.5	5.1	3.3	7.3	0.1	2.5	2	1	0	2	2	2	0	Sec23/Sec24	zinc	finger
A2L_zn_ribbon	PF08792.5	gi|146303712|ref|YP_001191028.1|	-	2.8	7.5	5.8	16	5.0	0.3	3.2	3	1	1	4	4	4	0	A2L	zinc	ribbon	domain
DUF4428	PF14471.1	gi|146303712|ref|YP_001191028.1|	-	3	7.6	7.0	4.4	7.1	0.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
zf-BED	PF02892.10	gi|146303712|ref|YP_001191028.1|	-	9.4	6.0	11.4	1.7	8.4	0.4	3.2	2	1	1	3	3	3	0	BED	zinc	finger
AIRS_C	PF02769.17	gi|146303713|ref|YP_001191029.1|	-	1e-17	64.5	0.8	1.5e-17	64.0	0.6	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|146303713|ref|YP_001191029.1|	-	2.5e-15	56.5	0.2	5e-15	55.5	0.2	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
AA_permease_2	PF13520.1	gi|146303715|ref|YP_001191031.1|	-	1.2e-23	83.3	46.3	1.5e-23	83.0	32.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303715|ref|YP_001191031.1|	-	4.3e-18	64.9	38.7	1.1e-16	60.2	27.0	2.0	1	1	0	1	1	1	1	Amino	acid	permease
SGL	PF08450.7	gi|146303716|ref|YP_001191032.1|	-	0.00013	21.4	0.1	0.049	12.9	0.0	2.6	3	0	0	3	3	3	2	SMP-30/Gluconolaconase/LRE-like	region
NHL	PF01436.16	gi|146303716|ref|YP_001191032.1|	-	0.019	14.8	3.6	17	5.5	0.1	5.2	6	0	0	6	6	6	0	NHL	repeat
Sema	PF01403.14	gi|146303716|ref|YP_001191032.1|	-	0.098	11.1	0.1	3.8	5.9	0.0	2.3	2	0	0	2	2	2	0	Sema	domain
SBBP	PF06739.6	gi|146303716|ref|YP_001191032.1|	-	1.5	8.7	12.3	4.5	7.1	0.0	4.9	5	0	0	5	5	5	0	Beta-propeller	repeat
DUF3211	PF11485.3	gi|146303718|ref|YP_001191034.1|	-	2.5e-48	163.5	0.0	2.8e-48	163.4	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
Thioredoxin	PF00085.15	gi|146303719|ref|YP_001191035.1|	-	2e-07	30.6	0.0	3.9e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_8	PF13905.1	gi|146303719|ref|YP_001191035.1|	-	0.048	13.7	0.0	0.14	12.3	0.0	1.8	1	0	0	1	1	1	0	Thioredoxin-like
DUF3176	PF11374.3	gi|146303719|ref|YP_001191035.1|	-	0.099	12.5	0.0	0.25	11.2	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3176)
SLAC1	PF03595.12	gi|146303720|ref|YP_001191036.1|	-	0.0085	14.7	14.1	0.01	14.4	9.8	1.0	1	0	0	1	1	1	1	Voltage-dependent	anion	channel
Abi	PF02517.11	gi|146303721|ref|YP_001191037.1|	-	1.5e-11	44.2	3.2	3.2e-11	43.2	2.2	1.8	1	1	0	1	1	1	1	CAAX	protease	self-immunity
Polysacc_deac_1	PF01522.16	gi|146303723|ref|YP_001191039.1|	-	0.1	12.2	0.0	0.29	10.7	0.0	1.8	1	1	0	1	1	1	0	Polysaccharide	deacetylase
NiFe_hyd_SSU_C	PF14720.1	gi|146303724|ref|YP_001191040.1|	-	3.5e-22	78.2	1.0	5.6e-22	77.5	0.7	1.3	1	0	0	1	1	1	1	NiFe/NiFeSe	hydrogenase	small	subunit	C-terminal
Oxidored_q6	PF01058.17	gi|146303724|ref|YP_001191040.1|	-	7.5e-15	54.7	0.0	2.3e-13	49.9	0.0	2.8	1	1	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
TAT_signal	PF10518.4	gi|146303724|ref|YP_001191040.1|	-	0.0016	18.3	1.0	0.0016	18.3	0.7	3.8	3	0	0	3	3	3	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
NiFeSe_Hases	PF00374.14	gi|146303725|ref|YP_001191041.1|	-	4.7e-12	45.4	1.1	4.7e-06	25.6	0.7	4.0	2	2	0	2	2	2	2	Nickel-dependent	hydrogenase
Nitrate_red_gam	PF02665.9	gi|146303726|ref|YP_001191042.1|	-	0.00022	20.6	1.1	0.00022	20.6	0.8	3.3	2	1	2	4	4	4	2	Nitrate	reductase	gamma	subunit
MerC	PF03203.9	gi|146303726|ref|YP_001191042.1|	-	0.011	16.0	2.3	0.011	16.0	1.6	2.5	2	1	1	3	3	3	0	MerC	mercury	resistance	protein
Fer4_8	PF13183.1	gi|146303727|ref|YP_001191043.1|	-	8.1e-11	41.7	1.3	1.7e-10	40.7	0.9	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146303727|ref|YP_001191043.1|	-	6.9e-06	26.3	1.0	2.2e-05	24.7	0.7	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303727|ref|YP_001191043.1|	-	7.7e-06	25.5	6.8	0.0038	17.0	0.8	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303727|ref|YP_001191043.1|	-	8e-06	26.1	0.5	0.18	12.2	0.0	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146303727|ref|YP_001191043.1|	-	2.7e-05	24.3	3.3	9.1e-05	22.6	2.3	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303727|ref|YP_001191043.1|	-	6e-05	22.7	6.3	0.0002	21.0	4.4	1.9	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303727|ref|YP_001191043.1|	-	0.00035	20.8	6.1	0.002	18.4	4.4	2.1	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303727|ref|YP_001191043.1|	-	0.00098	18.6	10.8	0.019	14.5	1.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146303727|ref|YP_001191043.1|	-	0.0026	17.9	10.4	0.19	12.1	1.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146303727|ref|YP_001191043.1|	-	0.0039	17.0	1.7	1.4	8.8	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
TPR_2	PF07719.12	gi|146303727|ref|YP_001191043.1|	-	0.01	15.6	0.4	0.13	12.2	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Fer4_16	PF13484.1	gi|146303727|ref|YP_001191043.1|	-	0.011	16.4	5.2	0.041	14.6	3.6	2.1	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4_13	PF13370.1	gi|146303727|ref|YP_001191043.1|	-	0.17	12.2	8.5	1.4	9.4	0.8	2.5	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|146303727|ref|YP_001191043.1|	-	0.71	10.4	3.3	31	5.2	0.2	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|146303727|ref|YP_001191043.1|	-	1.6	9.5	12.7	0.36	11.4	1.6	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Mur_ligase	PF01225.20	gi|146303728|ref|YP_001191044.1|	-	0.024	14.7	0.0	0.03	14.4	0.0	1.3	1	0	0	1	1	1	0	Mur	ligase	family,	catalytic	domain
RTX	PF02382.10	gi|146303728|ref|YP_001191044.1|	-	0.034	12.4	0.0	0.036	12.3	0.0	1.1	1	0	0	1	1	1	0	RTX	N-terminal	domain
CbiA	PF01656.18	gi|146303730|ref|YP_001191046.1|	-	1.3e-12	47.5	0.0	2.8e-12	46.4	0.0	1.5	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146303730|ref|YP_001191046.1|	-	5.6e-06	26.3	0.1	2.3e-05	24.4	0.0	2.0	3	1	0	3	3	3	1	AAA	domain
AAA_26	PF13500.1	gi|146303730|ref|YP_001191046.1|	-	0.00014	21.5	0.2	0.031	13.8	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303730|ref|YP_001191046.1|	-	0.00051	19.1	0.2	0.002	17.2	0.1	1.9	2	0	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146303730|ref|YP_001191046.1|	-	0.013	14.6	0.1	0.022	13.8	0.1	1.3	1	0	0	1	1	1	0	ATPase	MipZ
IstB_IS21	PF01695.12	gi|146303730|ref|YP_001191046.1|	-	0.087	12.2	0.0	0.15	11.4	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
TINF2_N	PF14973.1	gi|146303731|ref|YP_001191047.1|	-	0.0022	18.1	1.3	0.83	9.7	0.0	2.2	2	0	0	2	2	2	2	TERF1-interacting	nuclear	factor	2	N-terminus
DUF1237	PF06824.6	gi|146303731|ref|YP_001191047.1|	-	0.086	11.4	0.0	0.11	11.0	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1237)
IncA	PF04156.9	gi|146303731|ref|YP_001191047.1|	-	0.17	11.4	7.9	0.2	11.2	4.6	1.7	2	0	0	2	2	2	0	IncA	protein
Colicin-DNase	PF12639.2	gi|146303731|ref|YP_001191047.1|	-	0.18	12.0	2.0	0.27	11.4	1.4	1.4	1	0	0	1	1	1	0	DNase/tRNase	domain	of	colicin-like	bacteriocin
SpoVR	PF04293.8	gi|146303731|ref|YP_001191047.1|	-	0.79	8.0	4.8	1.1	7.5	3.4	1.1	1	0	0	1	1	1	0	SpoVR	like	protein
SWI-SNF_Ssr4	PF08549.5	gi|146303731|ref|YP_001191047.1|	-	1.1	7.4	4.2	1.4	7.1	2.9	1.1	1	0	0	1	1	1	0	Fungal	domain	of	unknown	function	(DUF1750)
UDPG_MGDP_dh	PF00984.14	gi|146303732|ref|YP_001191048.1|	-	0.025	14.7	0.6	0.033	14.3	0.4	1.3	1	1	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
DALR_1	PF05746.10	gi|146303732|ref|YP_001191048.1|	-	0.032	14.1	0.0	0.035	14.0	0.0	1.1	1	0	0	1	1	1	0	DALR	anticodon	binding	domain
LSM	PF01423.17	gi|146303732|ref|YP_001191048.1|	-	0.038	13.5	0.5	0.057	12.9	0.3	1.4	1	1	0	1	1	1	0	LSM	domain
DUF3510	PF12022.3	gi|146303732|ref|YP_001191048.1|	-	0.084	12.9	0.3	0.095	12.8	0.2	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3510)
Neurensin	PF14927.1	gi|146303733|ref|YP_001191049.1|	-	0.62	9.4	4.8	0.24	10.8	0.2	2.2	2	1	0	2	2	2	0	Neurensin
Colicin_V	PF02674.11	gi|146303733|ref|YP_001191049.1|	-	3.1	7.6	12.5	1.3	8.8	1.3	2.5	1	1	0	2	2	2	0	Colicin	V	production	protein
DUF2269	PF10027.4	gi|146303733|ref|YP_001191049.1|	-	8	6.2	8.6	3.4e+02	0.9	5.9	2.4	1	1	0	1	1	1	0	Predicted	integral	membrane	protein	(DUF2269)
AIRS_C	PF02769.17	gi|146303734|ref|YP_001191050.1|	-	1.6e-14	54.1	0.0	2.4e-14	53.5	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|146303734|ref|YP_001191050.1|	-	2.5e-07	30.8	0.0	4.4e-07	30.0	0.0	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
DUF3104	PF11302.3	gi|146303734|ref|YP_001191050.1|	-	0.055	12.8	0.2	3	7.3	0.0	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3104)
ChpXY	PF10216.4	gi|146303734|ref|YP_001191050.1|	-	0.096	11.5	0.0	0.41	9.4	0.0	1.8	2	0	0	2	2	2	0	CO2	hydration	protein	(ChpXY)
CbiA	PF01656.18	gi|146303735|ref|YP_001191051.1|	-	2e-12	46.9	0.1	3.3e-11	42.9	0.1	2.1	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146303735|ref|YP_001191051.1|	-	4.3e-08	33.2	0.2	1.7e-06	28.0	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146303735|ref|YP_001191051.1|	-	7.5e-05	21.9	0.8	0.00057	19.0	0.0	2.4	2	1	0	2	2	2	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146303735|ref|YP_001191051.1|	-	0.0028	16.7	0.1	0.0074	15.4	0.0	1.7	1	0	0	1	1	1	1	ATPase	MipZ
RNase_E_G	PF10150.4	gi|146303735|ref|YP_001191051.1|	-	0.039	13.1	0.0	0.09	11.9	0.0	1.6	2	0	0	2	2	2	0	Ribonuclease	E/G	family
Fer4_NifH	PF00142.13	gi|146303735|ref|YP_001191051.1|	-	0.057	12.6	0.2	0.38	9.8	0.0	2.0	2	0	0	2	2	2	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
DUF650	PF04894.7	gi|146303737|ref|YP_001191053.1|	-	1.6e-96	322.9	0.0	2.1e-96	322.5	0.0	1.2	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|146303737|ref|YP_001191053.1|	-	3.6e-38	129.5	0.0	6.2e-38	128.8	0.0	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
Radical_SAM	PF04055.16	gi|146303738|ref|YP_001191054.1|	-	1.7e-11	44.5	0.0	2.8e-11	43.8	0.0	1.4	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146303738|ref|YP_001191054.1|	-	0.035	14.1	0.6	1.1	9.3	0.2	2.8	3	1	0	3	3	3	0	4Fe-4S	single	cluster	domain
DUF1848	PF08902.6	gi|146303738|ref|YP_001191054.1|	-	2.2	7.7	6.1	25	4.3	0.0	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1848)
TP_methylase	PF00590.15	gi|146303739|ref|YP_001191055.1|	-	1.1e-39	136.3	0.0	1.3e-39	136.1	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
NIR_SIR	PF01077.17	gi|146303740|ref|YP_001191056.1|	-	9.3e-34	116.0	0.0	2.5e-27	95.1	0.0	2.6	2	1	0	2	2	2	2	Nitrite	and	sulphite	reductase	4Fe-4S	domain
NIR_SIR_ferr	PF03460.12	gi|146303740|ref|YP_001191056.1|	-	3.5e-20	71.3	0.0	3.7e-10	39.2	0.0	3.3	3	1	0	3	3	3	2	Nitrite/Sulfite	reductase	ferredoxin-like	half	domain
PAPS_reduct	PF01507.14	gi|146303741|ref|YP_001191057.1|	-	2.5e-42	144.6	0.1	3.1e-42	144.3	0.0	1.1	1	0	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
DDE_2	PF02914.10	gi|146303741|ref|YP_001191057.1|	-	0.004	16.7	0.0	0.0058	16.1	0.0	1.2	1	0	0	1	1	1	1	Bacteriophage	Mu	transposase
ATP-sulfurylase	PF01747.12	gi|146303742|ref|YP_001191058.1|	-	1.2e-79	266.5	0.0	1.7e-79	266.0	0.0	1.1	1	0	0	1	1	1	1	ATP-sulfurylase
PUA_2	PF14306.1	gi|146303742|ref|YP_001191058.1|	-	4.9e-38	130.0	0.0	7.8e-38	129.4	0.0	1.3	1	0	0	1	1	1	1	PUA-like	domain
DUF3611	PF12263.3	gi|146303743|ref|YP_001191059.1|	-	1.7	8.0	7.0	1.9	7.8	3.2	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3611)
Zip	PF02535.17	gi|146303743|ref|YP_001191059.1|	-	2.9	6.8	10.8	3.6	6.4	7.5	1.2	1	0	0	1	1	1	0	ZIP	Zinc	transporter
Copper-bind	PF00127.15	gi|146303744|ref|YP_001191060.1|	-	4.3e-06	26.8	0.1	7.5e-06	26.0	0.1	1.5	1	0	0	1	1	1	1	Copper	binding	proteins,	plastocyanin/azurin	family
SoxE	PF06525.6	gi|146303744|ref|YP_001191060.1|	-	0.0015	17.8	0.4	0.0015	17.8	0.3	2.6	2	2	0	2	2	2	1	Sulfocyanin	(SoxE)
Cu-oxidase_3	PF07732.10	gi|146303744|ref|YP_001191060.1|	-	0.0041	16.8	1.3	0.0075	15.9	0.2	2.0	2	0	0	2	2	2	1	Multicopper	oxidase
Cu_bind_like	PF02298.12	gi|146303744|ref|YP_001191060.1|	-	0.038	13.7	0.1	0.12	12.1	0.0	1.8	2	0	0	2	2	2	0	Plastocyanin-like	domain
Cu-oxidase_2	PF07731.9	gi|146303744|ref|YP_001191060.1|	-	0.075	12.5	0.0	0.14	11.6	0.0	1.5	1	0	0	1	1	1	0	Multicopper	oxidase
SBP56	PF05694.6	gi|146303745|ref|YP_001191061.1|	-	8.2e-209	693.8	0.0	9.3e-209	693.6	0.0	1.0	1	0	0	1	1	1	1	56kDa	selenium	binding	protein	(SBP56)
DUF1264	PF06884.6	gi|146303745|ref|YP_001191061.1|	-	0.15	11.5	0.0	0.25	10.7	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1264)
Rad54_N	PF08658.5	gi|146303745|ref|YP_001191061.1|	-	0.19	11.4	0.0	0.31	10.7	0.0	1.2	1	0	0	1	1	1	0	Rad54	N	terminal
Hjc	PF01870.13	gi|146303747|ref|YP_001191063.1|	-	2.4e-22	78.3	0.1	3.3e-22	77.8	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
CBS	PF00571.23	gi|146303748|ref|YP_001191064.1|	-	2.5e-16	59.2	3.3	7.2e-10	38.5	0.5	2.1	2	0	0	2	2	2	2	CBS	domain
MFS_1	PF07690.11	gi|146303749|ref|YP_001191065.1|	-	6.6e-28	97.4	46.1	6.6e-28	97.4	32.0	2.0	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|146303749|ref|YP_001191065.1|	-	1.2	7.1	16.6	0.032	12.3	0.6	3.1	2	1	0	3	3	3	0	Transmembrane	secretion	effector
TFIIE_alpha	PF02002.12	gi|146303750|ref|YP_001191066.1|	-	0.00045	19.6	0.0	0.0005	19.5	0.0	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_20	PF12840.2	gi|146303750|ref|YP_001191066.1|	-	0.003	17.3	0.0	0.0047	16.6	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146303750|ref|YP_001191066.1|	-	0.0054	16.4	0.1	0.0084	15.7	0.1	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146303750|ref|YP_001191066.1|	-	0.03	14.6	0.1	0.039	14.2	0.0	1.2	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|146303750|ref|YP_001191066.1|	-	0.032	14.2	0.0	0.039	13.9	0.0	1.1	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|146303750|ref|YP_001191066.1|	-	0.034	13.8	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HxlR	PF01638.12	gi|146303750|ref|YP_001191066.1|	-	0.059	13.0	0.1	0.069	12.7	0.1	1.1	1	0	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_43	PF09904.4	gi|146303750|ref|YP_001191066.1|	-	0.065	13.0	0.0	0.069	12.9	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF2582	PF10771.4	gi|146303750|ref|YP_001191066.1|	-	0.072	12.9	0.0	0.11	12.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2582)
Zip	PF02535.17	gi|146303751|ref|YP_001191067.1|	-	4.6e-06	25.8	6.4	4.6e-06	25.8	4.4	2.2	2	1	0	2	2	2	1	ZIP	Zinc	transporter
MFS_1	PF07690.11	gi|146303752|ref|YP_001191068.1|	-	1e-17	63.9	67.0	1.1e-12	47.4	22.2	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
DUF1028	PF06267.7	gi|146303753|ref|YP_001191069.1|	-	3e-68	229.0	0.0	4e-68	228.5	0.0	1.1	1	0	0	1	1	1	1	Family	of	unknown	function	(DUF1028)
PG_binding_2	PF08823.6	gi|146303753|ref|YP_001191069.1|	-	6.6e-07	29.3	0.1	1.4e-06	28.2	0.1	1.6	1	0	0	1	1	1	1	Putative	peptidoglycan	binding	domain
P5CR_dimer	PF14748.1	gi|146303754|ref|YP_001191070.1|	-	7.4e-31	106.3	0.0	1.5e-30	105.3	0.0	1.6	1	0	0	1	1	1	1	Pyrroline-5-carboxylate	reductase	dimerisation
F420_oxidored	PF03807.12	gi|146303754|ref|YP_001191070.1|	-	3e-16	59.6	0.1	9.1e-16	58.0	0.0	1.8	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|146303754|ref|YP_001191070.1|	-	6.5e-06	26.0	0.2	0.00013	21.8	0.0	2.3	1	1	1	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_10	PF13460.1	gi|146303754|ref|YP_001191070.1|	-	0.0002	21.4	0.3	0.00035	20.6	0.2	1.4	1	0	0	1	1	1	1	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|146303754|ref|YP_001191070.1|	-	0.00021	21.0	0.6	0.0057	16.3	0.4	2.4	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|146303754|ref|YP_001191070.1|	-	0.00048	19.5	0.1	0.00086	18.7	0.1	1.4	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
2-Hacid_dh_C	PF02826.14	gi|146303754|ref|YP_001191070.1|	-	0.0034	16.5	0.1	0.021	13.9	0.0	2.0	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|146303754|ref|YP_001191070.1|	-	0.02	14.5	0.6	0.042	13.5	0.1	1.8	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Epimerase	PF01370.16	gi|146303754|ref|YP_001191070.1|	-	0.038	13.4	0.1	0.16	11.3	0.1	1.9	1	1	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
NmrA	PF05368.8	gi|146303754|ref|YP_001191070.1|	-	0.14	11.4	0.1	0.19	10.9	0.1	1.3	1	0	0	1	1	1	0	NmrA-like	family
CHAD	PF05235.9	gi|146303755|ref|YP_001191071.1|	-	2.2e-08	33.9	0.2	0.0023	17.5	0.3	2.2	1	1	1	2	2	2	2	CHAD	domain
Thymidylate_kin	PF02223.12	gi|146303756|ref|YP_001191072.1|	-	6.6e-08	32.1	0.0	1.4e-07	31.0	0.0	1.5	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_17	PF13207.1	gi|146303756|ref|YP_001191072.1|	-	0.061	14.1	0.0	0.091	13.5	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|146303756|ref|YP_001191072.1|	-	0.11	12.0	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	AAA	domain
Thymidylate_kin	PF02223.12	gi|146303757|ref|YP_001191073.1|	-	1.7e-26	92.7	0.0	2.8e-26	92.0	0.0	1.3	1	1	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.1	gi|146303757|ref|YP_001191073.1|	-	4.4e-05	23.8	0.0	0.00014	22.1	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146303757|ref|YP_001191073.1|	-	0.0052	17.5	0.1	0.11	13.3	0.0	2.3	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|146303757|ref|YP_001191073.1|	-	0.11	12.6	0.0	0.22	11.6	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
Ppx-GppA	PF02541.11	gi|146303758|ref|YP_001191074.1|	-	9.4e-39	133.3	0.0	1.3e-38	132.8	0.0	1.1	1	0	0	1	1	1	1	Ppx/GppA	phosphatase	family
His_Phos_1	PF00300.17	gi|146303759|ref|YP_001191075.1|	-	1.9e-16	60.5	0.0	4.7e-15	56.0	0.0	2.0	1	1	1	2	2	2	1	Histidine	phosphatase	superfamily	(branch	1)
LCAT	PF02450.10	gi|146303759|ref|YP_001191075.1|	-	0.021	13.8	0.0	0.031	13.2	0.0	1.2	1	0	0	1	1	1	0	Lecithin:cholesterol	acyltransferase
V-SNARE	PF05008.10	gi|146303759|ref|YP_001191075.1|	-	0.31	11.2	2.0	1.9	8.6	0.1	2.5	2	1	1	3	3	3	0	Vesicle	transport	v-SNARE	protein	N-terminus
Amidohydro_2	PF04909.9	gi|146303761|ref|YP_001191077.1|	-	7.3e-41	140.5	0.5	1.2e-40	139.8	0.1	1.5	2	0	0	2	2	2	1	Amidohydrolase
CbiA	PF01656.18	gi|146303762|ref|YP_001191078.1|	-	3.2e-05	23.4	0.0	5.4e-05	22.6	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
TENA_THI-4	PF03070.11	gi|146303763|ref|YP_001191079.1|	-	1.2e-29	103.5	0.4	1.7e-29	103.0	0.3	1.1	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Haem_oxygenas_2	PF14518.1	gi|146303763|ref|YP_001191079.1|	-	0.00035	20.6	0.1	0.00089	19.3	0.0	1.7	2	0	0	2	2	2	1	Iron-containing	redox	enzyme
EF-hand_like	PF09279.6	gi|146303763|ref|YP_001191079.1|	-	0.077	13.0	0.1	0.15	12.1	0.1	1.4	1	0	0	1	1	1	0	Phosphoinositide-specific	phospholipase	C,	efhand-like
Ta0938	PF11494.3	gi|146303764|ref|YP_001191080.1|	-	1.3e-59	198.7	4.5	1.5e-59	198.6	3.1	1.0	1	0	0	1	1	1	1	Ta0938
ChW	PF07538.6	gi|146303764|ref|YP_001191080.1|	-	0.027	13.9	0.1	0.065	12.7	0.0	1.7	1	0	0	1	1	1	0	Clostridial	hydrophobic	W
Metallophos	PF00149.23	gi|146303764|ref|YP_001191080.1|	-	0.06	12.7	0.0	0.069	12.5	0.0	1.1	1	0	0	1	1	1	0	Calcineurin-like	phosphoesterase
YHS	PF04945.8	gi|146303764|ref|YP_001191080.1|	-	0.064	13.1	0.3	0.12	12.2	0.2	1.4	1	0	0	1	1	1	0	YHS	domain
Toxin_56	PF15534.1	gi|146303764|ref|YP_001191080.1|	-	0.12	12.9	0.0	0.17	12.4	0.0	1.2	1	0	0	1	1	1	0	Putative	toxin	56
zf-H2C2_2	PF13465.1	gi|146303764|ref|YP_001191080.1|	-	0.28	11.5	0.2	0.28	11.5	0.1	1.8	2	0	0	2	2	2	0	Zinc-finger	double	domain
Glyco_hydro_15	PF00723.16	gi|146303765|ref|YP_001191081.1|	-	2.4e-51	174.7	0.0	5.4e-51	173.5	0.0	1.5	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	15
TPR_19	PF14559.1	gi|146303765|ref|YP_001191081.1|	-	0.084	13.2	0.6	0.28	11.5	0.0	2.1	3	0	0	3	3	3	0	Tetratricopeptide	repeat
DUF973	PF06157.6	gi|146303766|ref|YP_001191082.1|	-	1.6e-42	145.4	36.7	1.7e-35	122.3	13.3	2.9	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF973)
DUF3975	PF13126.1	gi|146303766|ref|YP_001191082.1|	-	0.24	11.5	6.5	0.56	10.3	4.4	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3975)
ADC	PF06314.6	gi|146303767|ref|YP_001191083.1|	-	5.7e-56	189.5	0.4	7e-56	189.2	0.2	1.0	1	0	0	1	1	1	1	Acetoacetate	decarboxylase	(ADC)
HTH_10	PF04967.7	gi|146303768|ref|YP_001191084.1|	-	3.1e-16	58.6	0.0	4.9e-16	58.0	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
TetR_N	PF00440.18	gi|146303768|ref|YP_001191084.1|	-	0.053	13.1	0.0	0.099	12.3	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	tetR	family
Sugar_tr	PF00083.19	gi|146303769|ref|YP_001191085.1|	-	3.6e-41	141.1	19.3	5.2e-41	140.6	13.4	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303769|ref|YP_001191085.1|	-	1.8e-25	89.4	63.5	7.7e-18	64.3	18.8	3.5	1	1	1	3	3	3	2	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|146303769|ref|YP_001191085.1|	-	0.00025	19.2	1.5	0.00025	19.2	1.1	2.5	2	1	0	2	2	2	1	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF485	PF04341.7	gi|146303769|ref|YP_001191085.1|	-	0.084	12.5	0.3	0.084	12.5	0.2	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function,	DUF485
DUF1228	PF06779.9	gi|146303769|ref|YP_001191085.1|	-	0.092	12.7	0.3	0.092	12.7	0.2	3.7	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1228)
Flavin_Reduct	PF01613.13	gi|146303770|ref|YP_001191086.1|	-	3.1e-30	105.0	0.0	3.5e-30	104.9	0.0	1.0	1	0	0	1	1	1	1	Flavin	reductase	like	domain
Glyoxalase	PF00903.20	gi|146303771|ref|YP_001191087.1|	-	1.3e-20	73.6	0.6	3.3e-13	49.7	0.3	2.2	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|146303771|ref|YP_001191087.1|	-	5.5e-12	46.2	0.3	1.5e-05	25.5	0.0	2.3	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|146303771|ref|YP_001191087.1|	-	2.3e-09	37.2	0.3	0.00022	21.2	0.1	3.0	2	2	1	3	3	3	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
HpaB_N	PF11794.3	gi|146303772|ref|YP_001191088.1|	-	1.7e-74	250.5	0.0	2.7e-74	249.9	0.0	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|146303772|ref|YP_001191088.1|	-	6e-55	185.2	0.1	1.1e-54	184.4	0.0	1.5	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Rieske	PF00355.21	gi|146303773|ref|YP_001191089.1|	-	1.5e-13	50.1	0.1	1.6e-13	50.0	0.1	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|146303773|ref|YP_001191089.1|	-	3.3e-13	49.2	0.0	3.9e-13	49.0	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
PQQ_3	PF13570.1	gi|146303773|ref|YP_001191089.1|	-	0.051	13.8	0.0	0.082	13.2	0.0	1.4	1	0	0	1	1	1	0	PQQ-like	domain
HEPN	PF05168.9	gi|146303774|ref|YP_001191090.1|	-	8.7e-16	57.8	0.2	9.4e-16	57.7	0.1	1.0	1	0	0	1	1	1	1	HEPN	domain
GTPase_Cys_C	PF12631.2	gi|146303774|ref|YP_001191090.1|	-	0.055	13.8	0.2	0.51	10.7	0.1	1.9	1	1	0	1	1	1	0	Catalytic	cysteine-containing	C-terminus	of	GTPase,	MnmE
NTP_transf_2	PF01909.18	gi|146303775|ref|YP_001191091.1|	-	1.7e-08	34.6	0.3	2.1e-08	34.3	0.2	1.3	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Adenyl_cycl_N	PF12633.2	gi|146303775|ref|YP_001191091.1|	-	0.071	12.6	0.0	0.081	12.4	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
MFS_1	PF07690.11	gi|146303777|ref|YP_001191093.1|	-	1.5e-39	135.6	49.1	3.5e-38	131.2	27.8	3.0	2	1	0	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303777|ref|YP_001191093.1|	-	1.9e-08	33.3	8.2	1.9e-08	33.3	5.7	3.0	2	2	0	2	2	2	1	Sugar	(and	other)	transporter
OATP	PF03137.15	gi|146303777|ref|YP_001191093.1|	-	9e-06	24.0	5.9	0.021	12.9	0.1	3.5	2	1	1	3	3	3	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
Methyltransf_31	PF13847.1	gi|146303779|ref|YP_001191095.1|	-	1.7e-17	63.4	0.0	2e-17	63.1	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303779|ref|YP_001191095.1|	-	1.1e-15	57.8	0.0	1.4e-15	57.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146303779|ref|YP_001191095.1|	-	3.5e-11	43.0	0.0	4.1e-11	42.8	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146303779|ref|YP_001191095.1|	-	1.9e-08	34.3	0.0	2.8e-08	33.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303779|ref|YP_001191095.1|	-	4.9e-07	30.3	0.0	7e-07	29.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146303779|ref|YP_001191095.1|	-	5.8e-07	28.8	0.0	9.8e-07	28.1	0.0	1.2	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|146303779|ref|YP_001191095.1|	-	8.9e-07	29.2	0.0	1.5e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303779|ref|YP_001191095.1|	-	1.4e-06	28.7	0.0	2e-06	28.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|146303779|ref|YP_001191095.1|	-	3.8e-06	26.5	0.0	6.8e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
MetW	PF07021.7	gi|146303779|ref|YP_001191095.1|	-	6.4e-05	22.4	0.0	9.3e-05	21.8	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
FtsJ	PF01728.14	gi|146303779|ref|YP_001191095.1|	-	9e-05	22.5	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	FtsJ-like	methyltransferase
MTS	PF05175.9	gi|146303779|ref|YP_001191095.1|	-	0.0022	17.3	0.0	0.0028	17.0	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.15	gi|146303779|ref|YP_001191095.1|	-	0.015	14.2	0.0	0.025	13.6	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
PrmA	PF06325.8	gi|146303779|ref|YP_001191095.1|	-	0.019	14.0	0.0	0.048	12.7	0.0	1.6	1	1	1	2	2	2	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
ICMT	PF04140.9	gi|146303780|ref|YP_001191096.1|	-	9.9e-18	64.1	0.2	1.8e-17	63.3	0.2	1.4	1	0	0	1	1	1	1	Isoprenylcysteine	carboxyl	methyltransferase	(ICMT)	family
PEMT	PF04191.8	gi|146303780|ref|YP_001191096.1|	-	3.7e-16	59.1	0.8	3.7e-16	59.1	0.6	1.7	2	0	0	2	2	2	1	Phospholipid	methyltransferase
DUF1295	PF06966.7	gi|146303780|ref|YP_001191096.1|	-	7.3e-06	25.4	0.3	9e-06	25.1	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1295)
Steroid_dh	PF02544.11	gi|146303780|ref|YP_001191096.1|	-	0.025	14.3	1.6	0.97	9.1	0.0	2.2	2	0	0	2	2	2	0	3-oxo-5-alpha-steroid	4-dehydrogenase
HTH_5	PF01022.15	gi|146303781|ref|YP_001191097.1|	-	8.5e-18	63.7	1.7	1.1e-17	63.3	0.2	1.9	2	0	0	2	2	2	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|146303781|ref|YP_001191097.1|	-	1.4e-09	37.5	0.0	2.1e-09	37.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146303781|ref|YP_001191097.1|	-	2.7e-06	26.9	0.0	8.4e-06	25.4	0.0	1.7	1	1	1	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.1	gi|146303781|ref|YP_001191097.1|	-	3.3e-06	26.5	0.1	5.6e-06	25.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.1	gi|146303781|ref|YP_001191097.1|	-	6.1e-05	22.9	0.1	0.00012	22.0	0.0	1.5	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
KorB	PF08535.5	gi|146303781|ref|YP_001191097.1|	-	0.0002	21.4	0.0	0.00082	19.4	0.0	1.8	2	0	0	2	2	2	1	KorB	domain
Sigma70_r4	PF04545.11	gi|146303781|ref|YP_001191097.1|	-	0.00049	19.3	0.0	0.0053	16.0	0.0	2.1	2	0	0	2	2	2	1	Sigma-70,	region	4
Rrf2	PF02082.15	gi|146303781|ref|YP_001191097.1|	-	0.0018	18.3	0.0	0.0026	17.8	0.0	1.2	1	0	0	1	1	1	1	Transcriptional	regulator
LexA_DNA_bind	PF01726.11	gi|146303781|ref|YP_001191097.1|	-	0.0027	17.2	0.0	0.0041	16.6	0.0	1.3	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_24	PF13412.1	gi|146303781|ref|YP_001191097.1|	-	0.0058	15.9	0.0	0.013	14.9	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|146303781|ref|YP_001191097.1|	-	0.0084	15.7	0.1	0.019	14.6	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.5	gi|146303781|ref|YP_001191097.1|	-	0.017	14.6	0.0	0.029	13.9	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|146303781|ref|YP_001191097.1|	-	0.018	14.6	0.0	0.031	13.9	0.0	1.4	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_29	PF13551.1	gi|146303781|ref|YP_001191097.1|	-	0.032	14.3	0.0	0.039	14.0	0.0	1.1	1	0	0	1	1	1	0	Winged	helix-turn	helix
PaaX	PF07848.7	gi|146303781|ref|YP_001191097.1|	-	0.032	14.2	0.0	0.059	13.3	0.0	1.5	1	0	0	1	1	1	0	PaaX-like	protein
HTH_41	PF14502.1	gi|146303781|ref|YP_001191097.1|	-	0.035	13.7	0.0	0.062	12.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_40	PF14493.1	gi|146303781|ref|YP_001191097.1|	-	0.057	13.6	0.1	0.081	13.1	0.0	1.3	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|146303781|ref|YP_001191097.1|	-	0.07	12.9	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
IU_nuc_hydro	PF01156.14	gi|146303782|ref|YP_001191098.1|	-	2.1e-75	253.8	0.0	2.3e-75	253.7	0.0	1.0	1	0	0	1	1	1	1	Inosine-uridine	preferring	nucleoside	hydrolase
adh_short	PF00106.20	gi|146303783|ref|YP_001191099.1|	-	1.4e-34	119.4	0.1	2e-34	118.9	0.1	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|146303783|ref|YP_001191099.1|	-	3.8e-33	115.2	0.0	4.4e-33	115.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|146303783|ref|YP_001191099.1|	-	1.2e-16	60.8	0.1	1.7e-16	60.3	0.1	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.16	gi|146303783|ref|YP_001191099.1|	-	0.00021	20.8	0.1	0.00033	20.1	0.0	1.4	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
PolyA_pol	PF01743.15	gi|146303783|ref|YP_001191099.1|	-	0.016	15.3	0.0	0.046	13.9	0.0	1.7	1	1	0	1	1	1	0	Poly	A	polymerase	head	domain
NAD_binding_10	PF13460.1	gi|146303783|ref|YP_001191099.1|	-	0.057	13.4	0.8	0.27	11.2	0.5	2.0	1	1	0	1	1	1	0	NADH(P)-binding
Eno-Rase_NADH_b	PF12242.3	gi|146303783|ref|YP_001191099.1|	-	0.1	12.3	0.4	0.27	11.0	0.3	1.7	1	0	0	1	1	1	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
Glyco_transf_28	PF03033.15	gi|146303783|ref|YP_001191099.1|	-	0.11	12.2	0.0	0.24	11.1	0.0	1.6	1	0	0	1	1	1	0	Glycosyltransferase	family	28	N-terminal	domain
Thiolase_C	PF02803.13	gi|146303784|ref|YP_001191100.1|	-	0.00034	20.0	0.0	0.0007	19.0	0.0	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
DUF35_N	PF12172.3	gi|146303785|ref|YP_001191101.1|	-	1.3e-07	31.3	2.2	2e-07	30.7	1.5	1.3	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF35	PF01796.12	gi|146303785|ref|YP_001191101.1|	-	6.3e-07	29.5	2.7	1e-05	25.6	1.8	2.1	1	1	0	1	1	1	1	DUF35	OB-fold	domain
FdhE	PF04216.7	gi|146303785|ref|YP_001191101.1|	-	0.027	14.1	0.2	0.035	13.8	0.2	1.1	1	0	0	1	1	1	0	Protein	involved	in	formate	dehydrogenase	formation
Zn-ribbon_8	PF09723.5	gi|146303785|ref|YP_001191101.1|	-	1.6	8.7	4.2	21	5.1	2.9	2.1	1	1	0	1	1	1	0	Zinc	ribbon	domain
Phosphoesterase	PF04185.9	gi|146303786|ref|YP_001191102.1|	-	2.7e-66	224.3	1.6	3.4e-66	223.9	1.1	1.1	1	0	0	1	1	1	1	Phosphoesterase	family
BacA	PF02673.13	gi|146303787|ref|YP_001191103.1|	-	1.1e-52	178.8	24.4	1.3e-52	178.5	16.9	1.0	1	0	0	1	1	1	1	Bacitracin	resistance	protein	BacA
DUF4396	PF14342.1	gi|146303787|ref|YP_001191103.1|	-	0.71	9.9	14.4	0.11	12.6	1.8	2.7	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4396)
Tom22	PF04281.8	gi|146303787|ref|YP_001191103.1|	-	5.9	6.4	5.5	0.8	9.2	0.2	2.1	3	0	0	3	3	3	0	Mitochondrial	import	receptor	subunit	Tom22
Peptidase_M48	PF01435.13	gi|146303788|ref|YP_001191104.1|	-	3.8e-30	105.1	0.0	7.2e-30	104.2	0.0	1.4	1	0	0	1	1	1	1	Peptidase	family	M48
Glyco_hydro_75	PF07335.6	gi|146303788|ref|YP_001191104.1|	-	0.087	12.7	0.0	0.13	12.1	0.0	1.2	1	0	0	1	1	1	0	Fungal	chitosanase	of	glycosyl	hydrolase	group	75
Peptidase_M56	PF05569.6	gi|146303788|ref|YP_001191104.1|	-	0.18	10.7	3.0	0.36	9.7	0.0	2.4	3	0	0	3	3	3	0	BlaR1	peptidase	M56
MFS_1	PF07690.11	gi|146303789|ref|YP_001191105.1|	-	4.7e-22	78.1	36.0	4.7e-22	78.1	25.0	2.0	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303789|ref|YP_001191105.1|	-	1.7e-17	63.1	32.6	8e-17	60.9	22.6	1.9	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_2	PF13347.1	gi|146303789|ref|YP_001191105.1|	-	8.2	4.6	47.2	0.098	11.0	8.5	3.1	3	1	0	3	3	3	0	MFS/sugar	transport	protein
DUF1290	PF06947.7	gi|146303790|ref|YP_001191106.1|	-	0.019	14.8	1.7	0.019	14.8	1.2	2.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1290)
MotA_ExbB	PF01618.11	gi|146303790|ref|YP_001191106.1|	-	0.16	11.5	1.4	0.59	9.7	0.0	2.1	1	1	1	2	2	2	0	MotA/TolQ/ExbB	proton	channel	family
EOS1	PF12326.3	gi|146303790|ref|YP_001191106.1|	-	0.33	10.5	5.1	0.7	9.5	3.5	1.5	1	0	0	1	1	1	0	N-glycosylation	protein
UPF0370	PF13980.1	gi|146303790|ref|YP_001191106.1|	-	1.8	8.4	4.2	0.44	10.3	0.3	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	(UPF0370)
AMP-binding	PF00501.23	gi|146303791|ref|YP_001191107.1|	-	6.9e-80	268.4	0.0	8.9e-80	268.1	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303791|ref|YP_001191107.1|	-	4.4e-24	85.2	0.4	8.3e-24	84.3	0.3	1.5	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
GH3	PF03321.8	gi|146303791|ref|YP_001191107.1|	-	0.0039	15.7	0.1	0.0058	15.2	0.0	1.2	1	0	0	1	1	1	1	GH3	auxin-responsive	promoter
AAA_14	PF13173.1	gi|146303792|ref|YP_001191108.1|	-	1.6e-30	105.6	0.0	3.6e-30	104.4	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.1	gi|146303792|ref|YP_001191108.1|	-	8.4e-10	38.6	0.1	1.7e-09	37.7	0.1	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
AAA_17	PF13207.1	gi|146303792|ref|YP_001191108.1|	-	0.065	14.0	2.4	0.37	11.6	0.0	2.9	2	2	1	3	3	3	0	AAA	domain
Usp	PF00582.21	gi|146303793|ref|YP_001191109.1|	-	8e-33	113.5	1.0	9.6e-33	113.3	0.7	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
Ldh_2	PF02615.9	gi|146303793|ref|YP_001191109.1|	-	0.02	13.6	0.1	0.025	13.3	0.1	1.2	1	0	0	1	1	1	0	Malate/L-lactate	dehydrogenase
DXP_reductoisom	PF02670.11	gi|146303793|ref|YP_001191109.1|	-	0.038	14.5	0.0	0.086	13.3	0.0	1.6	1	1	0	1	1	1	0	1-deoxy-D-xylulose	5-phosphate	reductoisomerase
Thermopsin	PF05317.6	gi|146303794|ref|YP_001191110.1|	-	3.1e-85	285.3	16.8	3.1e-85	285.3	11.7	2.0	2	0	0	2	2	2	1	Thermopsin
BiPBP_C	PF06832.7	gi|146303794|ref|YP_001191110.1|	-	1.3e-16	60.2	0.0	0.00074	19.3	0.0	6.2	4	2	2	6	6	6	3	Penicillin-Binding	Protein	C-terminus	Family
PKD	PF00801.15	gi|146303794|ref|YP_001191110.1|	-	2.3e-10	40.0	35.9	0.02	14.6	0.5	7.2	6	0	0	6	6	6	5	PKD	domain
DUF4399	PF14347.1	gi|146303794|ref|YP_001191110.1|	-	7.6e-09	35.4	1.2	0.28	11.2	0.0	5.3	5	0	0	5	5	5	2	Domain	of	unknown	function	(DUF4399)
SprB	PF13573.1	gi|146303794|ref|YP_001191110.1|	-	1.1e-08	34.5	42.8	0.013	15.0	0.1	8.0	7	0	0	7	7	7	6	SprB	repeat
Big_3_4	PF13754.1	gi|146303794|ref|YP_001191110.1|	-	1.7e-08	34.6	40.5	0.1	12.9	3.4	7.7	7	1	0	7	7	7	4	Bacterial	Ig-like	domain	(group	3)
DUF4625	PF15418.1	gi|146303794|ref|YP_001191110.1|	-	9.4e-07	29.0	0.0	0.019	15.0	0.0	4.3	4	0	0	4	4	4	1	Domain	of	unknown	function	(DUF4625)
DUF1918	PF08940.6	gi|146303794|ref|YP_001191110.1|	-	1.4e-05	24.3	1.5	7.7	5.9	0.0	5.5	6	0	0	6	6	6	1	Domain	of	unknown	function	(DUF1918)
Y_Y_Y	PF07495.8	gi|146303794|ref|YP_001191110.1|	-	0.00013	21.6	7.3	0.26	11.0	0.0	5.9	6	0	0	6	6	6	2	Y_Y_Y	domain
ChitinaseA_N	PF08329.5	gi|146303794|ref|YP_001191110.1|	-	0.00023	20.9	0.0	0.035	13.8	0.0	3.5	3	0	0	3	3	3	1	Chitinase	A,	N-terminal	domain
Ig_3	PF13927.1	gi|146303794|ref|YP_001191110.1|	-	0.002	18.5	32.0	5.7	7.5	0.3	7.9	8	0	0	8	8	8	2	Immunoglobulin	domain
He_PIG	PF05345.7	gi|146303794|ref|YP_001191110.1|	-	4.9	7.2	33.3	0.31	11.1	1.5	7.0	6	0	0	6	6	6	0	Putative	Ig	domain
Apolipoprotein	PF01442.13	gi|146303797|ref|YP_001191113.1|	-	3.9e-17	62.4	5.7	5.6e-09	35.7	0.6	2.2	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
DUF883	PF05957.8	gi|146303797|ref|YP_001191113.1|	-	1.2e-05	25.5	9.1	0.12	12.8	0.5	3.9	1	1	2	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF883)
Baculo_PEP_C	PF04513.7	gi|146303797|ref|YP_001191113.1|	-	1.9e-05	24.5	0.0	0.033	14.0	0.0	3.1	2	1	1	3	3	3	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Phasin	PF05597.6	gi|146303797|ref|YP_001191113.1|	-	6.6e-05	22.6	15.6	0.22	11.2	0.4	3.6	1	1	1	3	3	3	3	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
TPR_MLP1_2	PF07926.7	gi|146303797|ref|YP_001191113.1|	-	0.0031	17.2	0.0	0.091	12.5	0.0	2.8	1	1	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
DUF550	PF04447.7	gi|146303797|ref|YP_001191113.1|	-	0.011	15.3	3.1	0.71	9.5	0.2	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF550)
DUF4456	PF14644.1	gi|146303797|ref|YP_001191113.1|	-	0.016	14.4	9.6	0.12	11.5	0.1	3.1	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4456)
SF-assemblin	PF06705.6	gi|146303797|ref|YP_001191113.1|	-	0.038	13.1	20.5	0.083	12.0	11.3	2.2	1	1	1	2	2	2	0	SF-assemblin/beta	giardin
DUF948	PF06103.6	gi|146303797|ref|YP_001191113.1|	-	0.049	13.4	2.9	13	5.7	0.0	3.6	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
Fib_alpha	PF08702.5	gi|146303797|ref|YP_001191113.1|	-	0.06	13.4	8.0	0.9	9.6	0.7	2.9	1	1	3	4	4	4	0	Fibrinogen	alpha/beta	chain	family
Prominin	PF05478.6	gi|146303797|ref|YP_001191113.1|	-	0.068	10.7	6.8	0.85	7.0	0.1	3.0	1	1	1	3	3	3	0	Prominin
DUF2167	PF09935.4	gi|146303797|ref|YP_001191113.1|	-	0.074	11.8	1.3	0.14	11.0	0.7	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2167)
Mer2	PF09074.5	gi|146303797|ref|YP_001191113.1|	-	0.096	12.5	9.7	0.13	12.1	3.3	2.6	1	1	1	2	2	2	0	Mer2
Apo-CIII	PF05778.7	gi|146303797|ref|YP_001191113.1|	-	0.11	11.9	6.3	2.9	7.3	0.1	3.9	2	1	1	3	3	3	0	Apolipoprotein	CIII	(Apo-CIII)
YlqD	PF11068.3	gi|146303797|ref|YP_001191113.1|	-	0.12	12.4	12.8	0.69	9.9	2.2	3.0	1	1	2	3	3	3	0	YlqD	protein
SDH_alpha	PF03313.10	gi|146303797|ref|YP_001191113.1|	-	0.12	11.3	0.0	1.4	7.9	0.0	2.2	1	1	0	1	1	1	0	Serine	dehydratase	alpha	chain
DUF1664	PF07889.7	gi|146303797|ref|YP_001191113.1|	-	0.35	10.6	12.8	0.22	11.3	1.0	3.1	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
V-ATPase_G	PF03179.10	gi|146303797|ref|YP_001191113.1|	-	0.63	10.3	20.8	0.14	12.4	3.2	3.9	1	1	5	6	6	6	0	Vacuolar	(H+)-ATPase	G	subunit
Exonuc_VII_L	PF02601.10	gi|146303797|ref|YP_001191113.1|	-	0.65	9.1	4.7	3.5	6.7	3.2	1.9	1	1	0	1	1	1	0	Exonuclease	VII,	large	subunit
Apc4	PF12896.2	gi|146303797|ref|YP_001191113.1|	-	1.2	8.4	4.9	2	7.6	1.2	2.7	1	1	3	4	4	4	0	Anaphase-promoting	complex,	cyclosome,	subunit	4
TryThrA_C	PF12319.3	gi|146303797|ref|YP_001191113.1|	-	1.3	8.1	15.6	0.43	9.7	5.0	2.5	1	1	0	2	2	2	0	Tryptophan-Threonine-rich	plasmodium	antigen	C	terminal
OmpH	PF03938.9	gi|146303797|ref|YP_001191113.1|	-	2.4	8.0	11.0	9.4	6.1	0.0	2.8	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
GnsAB	PF08178.6	gi|146303797|ref|YP_001191113.1|	-	3.4	7.3	10.4	4.2	7.1	0.5	3.8	2	1	1	3	3	3	0	GnsA/GnsB	family
HSBP1	PF06825.7	gi|146303797|ref|YP_001191113.1|	-	3.7	7.1	23.1	8.3	6.0	0.4	6.4	4	2	1	5	5	5	0	Heat	shock	factor	binding	protein	1
Uds1	PF15456.1	gi|146303797|ref|YP_001191113.1|	-	6.7	6.7	10.9	4.4	7.3	0.3	3.6	1	1	2	3	3	3	0	Up-regulated	During	Septation
HSCB_C	PF07743.8	gi|146303797|ref|YP_001191113.1|	-	9	6.8	16.8	40	4.7	0.0	5.0	1	1	2	4	4	4	0	HSCB	C-terminal	oligomerisation	domain
YtxH	PF12732.2	gi|146303797|ref|YP_001191113.1|	-	9.2	6.7	23.1	7.3	7.0	1.8	4.8	1	1	1	2	2	1	0	YtxH-like	protein
AAA_5	PF07728.9	gi|146303799|ref|YP_001191115.1|	-	5.1e-17	61.9	0.0	2.2e-16	59.8	0.0	2.1	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|146303799|ref|YP_001191115.1|	-	8.3e-06	26.6	0.9	2.8e-05	24.9	0.0	2.4	3	1	0	3	3	1	1	AAA	domain
AAA_16	PF13191.1	gi|146303799|ref|YP_001191115.1|	-	3.9e-05	23.7	0.0	0.00016	21.6	0.0	2.0	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.1	gi|146303799|ref|YP_001191115.1|	-	6.6e-05	23.0	0.2	0.0071	16.4	0.0	3.0	2	1	0	2	2	2	1	AAA	domain
AAA	PF00004.24	gi|146303799|ref|YP_001191115.1|	-	0.00018	21.7	0.0	0.00067	19.8	0.0	2.1	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|146303799|ref|YP_001191115.1|	-	0.002	18.4	0.1	0.011	16.0	0.0	2.4	2	0	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|146303799|ref|YP_001191115.1|	-	0.0026	17.2	0.0	0.006	16.0	0.0	1.6	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|146303799|ref|YP_001191115.1|	-	0.0031	16.9	0.0	0.0059	16.0	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146303799|ref|YP_001191115.1|	-	0.0039	17.0	0.0	0.0076	16.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|146303799|ref|YP_001191115.1|	-	0.0082	15.8	0.0	0.014	15.0	0.0	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_14	PF13173.1	gi|146303799|ref|YP_001191115.1|	-	0.0091	15.8	0.1	0.085	12.7	0.0	2.8	3	1	0	3	3	3	1	AAA	domain
Mg_chelatase	PF01078.16	gi|146303799|ref|YP_001191115.1|	-	0.0096	15.1	0.0	0.02	14.0	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|146303799|ref|YP_001191115.1|	-	0.015	15.4	0.0	0.12	12.5	0.0	2.5	2	0	0	2	2	2	0	RNA	helicase
SRP54	PF00448.17	gi|146303799|ref|YP_001191115.1|	-	0.035	13.5	0.0	0.062	12.7	0.0	1.3	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_2	PF07724.9	gi|146303799|ref|YP_001191115.1|	-	0.036	13.9	0.0	0.086	12.7	0.0	1.6	1	1	0	1	1	1	0	AAA	domain	(Cdc48	subfamily)
RuvB_N	PF05496.7	gi|146303799|ref|YP_001191115.1|	-	0.036	13.0	0.0	0.07	12.1	0.0	1.4	1	0	0	1	1	1	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
Zeta_toxin	PF06414.7	gi|146303799|ref|YP_001191115.1|	-	0.042	12.9	0.0	0.11	11.5	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
AAA_28	PF13521.1	gi|146303799|ref|YP_001191115.1|	-	0.061	13.2	0.0	0.13	12.2	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DUF1500	PF07389.7	gi|146303799|ref|YP_001191115.1|	-	0.064	13.2	0.5	0.16	11.9	0.4	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1500)
NACHT	PF05729.7	gi|146303799|ref|YP_001191115.1|	-	0.093	12.3	0.0	0.23	11.1	0.0	1.6	1	0	0	1	1	1	0	NACHT	domain
MobB	PF03205.9	gi|146303799|ref|YP_001191115.1|	-	0.099	12.3	0.0	0.23	11.1	0.0	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
ATP-synt_ab	PF00006.20	gi|146303799|ref|YP_001191115.1|	-	0.1	12.0	0.0	0.18	11.2	0.0	1.4	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TIP49	PF06068.8	gi|146303799|ref|YP_001191115.1|	-	0.12	11.0	0.0	0.27	9.9	0.0	1.5	1	0	0	1	1	1	0	TIP49	C-terminus
AAA_3	PF07726.6	gi|146303799|ref|YP_001191115.1|	-	0.13	11.9	0.0	1.6	8.3	0.0	2.5	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF4098	PF13345.1	gi|146303800|ref|YP_001191116.1|	-	2.8e-06	27.1	20.4	0.00033	20.5	2.7	5.0	1	1	3	4	4	4	2	Domain	of	unknown	function	(DUF4098)
Shisa	PF13908.1	gi|146303800|ref|YP_001191116.1|	-	0.043	14.0	1.6	0.084	13.0	1.1	1.5	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
DUF2092	PF09865.4	gi|146303800|ref|YP_001191116.1|	-	0.11	11.5	0.0	0.27	10.2	0.0	1.5	1	1	0	1	1	1	0	Predicted	periplasmic	protein	(DUF2092)
DUF904	PF06005.7	gi|146303801|ref|YP_001191117.1|	-	0.00099	19.3	0.8	0.0014	18.8	0.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF904)
DUF3450	PF11932.3	gi|146303801|ref|YP_001191117.1|	-	0.0018	17.5	0.7	0.0026	17.0	0.5	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3450)
DUF4330	PF14221.1	gi|146303801|ref|YP_001191117.1|	-	0.0026	17.6	7.9	0.0026	17.6	5.5	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4330)
IncA	PF04156.9	gi|146303801|ref|YP_001191117.1|	-	0.0087	15.6	2.2	0.016	14.7	1.5	1.3	1	1	0	1	1	1	1	IncA	protein
Lzipper-MIP1	PF14389.1	gi|146303801|ref|YP_001191117.1|	-	0.018	15.1	0.1	0.027	14.5	0.1	1.2	1	0	0	1	1	1	0	Leucine-zipper	of	ternary	complex	factor	MIP1
KLRAQ	PF10205.4	gi|146303801|ref|YP_001191117.1|	-	0.098	12.7	0.1	0.15	12.1	0.1	1.3	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein
DUF3139	PF11337.3	gi|146303801|ref|YP_001191117.1|	-	0.13	12.5	2.8	0.17	12.1	1.6	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3139)
bZIP_1	PF00170.16	gi|146303801|ref|YP_001191117.1|	-	0.15	12.0	0.3	0.23	11.4	0.2	1.2	1	0	0	1	1	1	0	bZIP	transcription	factor
bZIP_2	PF07716.10	gi|146303801|ref|YP_001191117.1|	-	0.27	11.0	1.3	0.41	10.5	0.9	1.3	1	0	0	1	1	1	0	Basic	region	leucine	zipper
DUF948	PF06103.6	gi|146303801|ref|YP_001191117.1|	-	0.46	10.3	6.9	0.21	11.4	1.0	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
UPF0118	PF01594.11	gi|146303801|ref|YP_001191117.1|	-	0.52	9.2	7.2	0.66	8.8	5.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF20
DivIC	PF04977.10	gi|146303801|ref|YP_001191117.1|	-	0.74	9.3	8.8	0.34	10.4	3.7	2.2	2	1	0	2	2	2	0	Septum	formation	initiator
MerE	PF05052.7	gi|146303802|ref|YP_001191118.1|	-	0.016	15.1	0.1	0.12	12.3	0.0	2.2	2	0	0	2	2	2	0	MerE	protein
DUF4307	PF14155.1	gi|146303802|ref|YP_001191118.1|	-	0.087	12.6	0.3	0.17	11.6	0.2	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4307)
Shisa	PF13908.1	gi|146303802|ref|YP_001191118.1|	-	0.091	12.9	0.0	0.13	12.4	0.0	1.2	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
Methyltransf_31	PF13847.1	gi|146303803|ref|YP_001191119.1|	-	2e-13	50.2	0.0	3.8e-13	49.3	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146303803|ref|YP_001191119.1|	-	2.2e-12	47.2	0.0	4.8e-12	46.2	0.0	1.6	2	0	0	2	2	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146303803|ref|YP_001191119.1|	-	1.5e-11	44.6	0.0	2.5e-11	43.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146303803|ref|YP_001191119.1|	-	4.3e-11	43.3	0.0	9.8e-11	42.2	0.0	1.5	2	0	0	2	2	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|146303803|ref|YP_001191119.1|	-	3.1e-10	39.6	0.0	4.4e-10	39.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|146303803|ref|YP_001191119.1|	-	5.6e-08	32.8	0.0	9.5e-08	32.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146303803|ref|YP_001191119.1|	-	8.9e-08	32.0	0.0	1.2e-07	31.5	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146303803|ref|YP_001191119.1|	-	1.4e-07	31.8	0.0	2.4e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|146303803|ref|YP_001191119.1|	-	1.5e-05	24.6	0.0	1.8e-05	24.4	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|146303803|ref|YP_001191119.1|	-	6.4e-05	22.2	0.0	8.5e-05	21.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
PCMT	PF01135.14	gi|146303803|ref|YP_001191119.1|	-	0.00051	19.6	0.0	0.002	17.6	0.0	1.7	2	0	0	2	2	2	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Met_10	PF02475.11	gi|146303803|ref|YP_001191119.1|	-	0.00055	19.5	0.0	0.00077	19.0	0.0	1.2	1	0	0	1	1	1	1	Met-10+	like-protein
FmrO	PF07091.6	gi|146303803|ref|YP_001191119.1|	-	0.00062	18.8	0.0	0.00077	18.5	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	methyltransferase	(FmrO)
NodS	PF05401.6	gi|146303803|ref|YP_001191119.1|	-	0.00068	19.0	0.0	0.001	18.4	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
CMAS	PF02353.15	gi|146303803|ref|YP_001191119.1|	-	0.00085	18.4	0.0	0.0011	18.1	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_24	PF13578.1	gi|146303803|ref|YP_001191119.1|	-	0.0011	19.7	0.0	0.0053	17.5	0.0	2.1	2	1	1	3	3	3	1	Methyltransferase	domain
Methyltransf_2	PF00891.13	gi|146303803|ref|YP_001191119.1|	-	0.0019	17.4	0.0	0.0026	16.9	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_4	PF02390.12	gi|146303803|ref|YP_001191119.1|	-	0.011	14.8	0.0	0.014	14.4	0.0	1.2	1	0	0	1	1	1	0	Putative	methyltransferase
GidB	PF02527.10	gi|146303803|ref|YP_001191119.1|	-	0.043	12.9	0.0	0.096	11.8	0.0	1.5	1	1	0	1	1	1	0	rRNA	small	subunit	methyltransferase	G
ChaB	PF06150.7	gi|146303803|ref|YP_001191119.1|	-	0.055	13.2	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	ChaB
Apolipoprotein	PF01442.13	gi|146303804|ref|YP_001191120.1|	-	1.2e-07	31.4	11.5	1.9e-07	30.7	7.9	1.3	1	0	0	1	1	1	1	Apolipoprotein	A1/A4/E	domain
HSBP1	PF06825.7	gi|146303804|ref|YP_001191120.1|	-	0.00041	19.8	14.8	0.031	13.8	3.2	4.1	2	1	1	3	3	3	1	Heat	shock	factor	binding	protein	1
Phasin_2	PF09361.5	gi|146303804|ref|YP_001191120.1|	-	0.0014	18.5	0.1	0.33	11.0	0.0	2.5	3	0	0	3	3	2	1	Phasin	protein
YlqD	PF11068.3	gi|146303804|ref|YP_001191120.1|	-	0.0016	18.4	12.3	0.0084	16.1	4.1	2.3	1	1	1	2	2	2	2	YlqD	protein
DUF4456	PF14644.1	gi|146303804|ref|YP_001191120.1|	-	0.0053	16.0	7.3	0.16	11.2	1.7	2.4	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4456)
MIS13	PF08202.6	gi|146303804|ref|YP_001191120.1|	-	0.015	14.4	9.5	0.013	14.5	2.3	2.1	1	1	1	2	2	2	0	Mis12-Mtw1	protein	family
PaaSYMP	PF14738.1	gi|146303804|ref|YP_001191120.1|	-	0.016	14.9	16.5	0.072	12.8	2.2	2.8	1	1	2	3	3	3	0	Solute	carrier	(proton/amino	acid	symporter),	TRAMD3	or	PAT1
DUF4351	PF14261.1	gi|146303804|ref|YP_001191120.1|	-	0.028	14.2	4.0	0.38	10.6	0.2	3.6	1	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4351)
Phasin	PF05597.6	gi|146303804|ref|YP_001191120.1|	-	0.03	14.0	12.0	0.86	9.3	1.1	3.3	1	1	2	3	3	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
Spectrin	PF00435.16	gi|146303804|ref|YP_001191120.1|	-	0.056	13.7	10.0	2.7	8.3	0.5	3.0	1	1	3	4	4	4	0	Spectrin	repeat
Baculo_PEP_C	PF04513.7	gi|146303804|ref|YP_001191120.1|	-	0.064	13.0	0.8	8	6.2	0.1	2.4	1	1	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
PLAC9	PF15205.1	gi|146303804|ref|YP_001191120.1|	-	0.069	13.4	0.3	0.24	11.7	0.0	1.9	2	0	0	2	2	1	0	Placenta-specific	protein	9
Ded_cyto	PF06920.8	gi|146303804|ref|YP_001191120.1|	-	0.082	12.1	7.4	0.059	12.6	0.5	2.2	1	1	1	2	2	2	0	Dedicator	of	cytokinesis
UPF0449	PF15136.1	gi|146303804|ref|YP_001191120.1|	-	0.083	13.0	0.7	0.083	13.0	0.5	3.5	1	1	1	2	2	1	0	Uncharacterised	protein	family	UPF0449
DUF826	PF05696.6	gi|146303804|ref|YP_001191120.1|	-	0.087	12.9	7.5	1.9	8.7	2.0	3.3	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF826)
DUF883	PF05957.8	gi|146303804|ref|YP_001191120.1|	-	0.094	13.1	9.2	0.9	9.9	1.0	2.6	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
Raptor_N	PF14538.1	gi|146303804|ref|YP_001191120.1|	-	0.11	12.3	0.3	0.24	11.2	0.1	1.7	1	1	0	1	1	1	0	Raptor	N-terminal	CASPase	like	domain
DUF948	PF06103.6	gi|146303804|ref|YP_001191120.1|	-	0.13	12.1	0.5	16	5.4	0.0	2.7	2	1	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF948)
ZapA	PF05164.8	gi|146303804|ref|YP_001191120.1|	-	0.14	12.1	8.5	23	5.0	0.1	4.4	1	1	4	5	5	5	0	Cell	division	protein	ZapA
DUF4407	PF14362.1	gi|146303804|ref|YP_001191120.1|	-	0.23	10.3	8.2	0.48	9.3	5.3	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
Vwaint	PF14624.1	gi|146303804|ref|YP_001191120.1|	-	0.27	11.3	1.3	45	4.2	0.1	3.3	2	1	1	3	3	3	0	VWA	/	Hh	protein	intein-like
ApoLp-III	PF07464.6	gi|146303804|ref|YP_001191120.1|	-	0.28	11.1	7.0	0.5	10.3	4.4	1.8	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
DUF4047	PF13256.1	gi|146303804|ref|YP_001191120.1|	-	0.37	10.7	11.0	0.088	12.7	5.0	1.8	1	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4047)
Prominin	PF05478.6	gi|146303804|ref|YP_001191120.1|	-	0.38	8.2	6.3	1.1	6.7	0.4	2.1	1	1	1	2	2	2	0	Prominin
V-ATPase_G	PF03179.10	gi|146303804|ref|YP_001191120.1|	-	0.73	10.1	15.7	0.76	10.1	2.4	2.9	1	1	2	3	3	3	0	Vacuolar	(H+)-ATPase	G	subunit
HSCB_C	PF07743.8	gi|146303804|ref|YP_001191120.1|	-	0.85	10.1	14.6	11	6.5	2.1	3.2	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
DUF2479	PF10651.4	gi|146303804|ref|YP_001191120.1|	-	0.87	9.0	12.8	3.4	7.1	0.6	3.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF2479)
HalX	PF08663.5	gi|146303804|ref|YP_001191120.1|	-	1	9.4	18.3	0.36	10.8	0.7	4.1	1	1	2	4	4	4	0	HalX	domain
bZIP_1	PF00170.16	gi|146303804|ref|YP_001191120.1|	-	1.1	9.2	11.9	0.62	10.0	0.3	3.8	1	1	2	3	3	3	0	bZIP	transcription	factor
TPD52	PF04201.10	gi|146303804|ref|YP_001191120.1|	-	1.2	8.7	7.7	2.2	7.9	5.3	1.6	1	1	0	1	1	1	0	Tumour	protein	D52	family
Phage_GPO	PF05929.6	gi|146303804|ref|YP_001191120.1|	-	1.3	8.2	10.6	2.8	7.1	4.2	2.1	1	1	1	2	2	2	0	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
MutS_III	PF05192.13	gi|146303804|ref|YP_001191120.1|	-	1.3	8.7	5.8	4.9	6.8	4.0	1.8	1	1	0	1	1	1	0	MutS	domain	III
DUF3618	PF12277.3	gi|146303804|ref|YP_001191120.1|	-	1.6	8.7	7.1	2.8	8.0	0.6	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3618)
DUF4482	PF14818.1	gi|146303804|ref|YP_001191120.1|	-	1.7	9.2	13.0	1.2	9.8	1.2	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4482)
DUF2164	PF09932.4	gi|146303804|ref|YP_001191120.1|	-	1.9	8.3	11.0	1.7	8.5	0.0	4.3	2	1	1	3	3	3	0	Uncharacterized	conserved	protein	(DUF2164)
CENP-Q	PF13094.1	gi|146303804|ref|YP_001191120.1|	-	2.2	8.2	11.0	6.1	6.8	7.5	1.9	1	1	1	2	2	2	0	CENP-Q,	a	CENPA-CAD	centromere	complex	subunit
Syntaxin	PF00804.20	gi|146303804|ref|YP_001191120.1|	-	2.3	8.4	11.5	0.68	10.1	1.9	2.7	1	1	1	2	2	2	0	Syntaxin
TipAS	PF07739.8	gi|146303804|ref|YP_001191120.1|	-	2.5	8.4	12.8	3.8	7.8	1.5	3.1	1	1	2	3	3	3	0	TipAS	antibiotic-recognition	domain
OmpH	PF03938.9	gi|146303804|ref|YP_001191120.1|	-	2.7	7.8	16.5	2.2e+02	1.7	11.4	2.1	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
Lipoprotein_6	PF01441.14	gi|146303804|ref|YP_001191120.1|	-	3	7.6	5.9	2.5	7.9	0.3	2.1	1	1	1	2	2	2	0	Lipoprotein
DUF4164	PF13747.1	gi|146303804|ref|YP_001191120.1|	-	3.1	7.9	13.7	10	6.3	2.4	2.9	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4164)
Vicilin_N	PF04702.7	gi|146303804|ref|YP_001191120.1|	-	3.4	7.2	13.9	8.4	5.9	9.5	1.8	1	1	0	1	1	1	0	Vicilin	N	terminal	region
IncA	PF04156.9	gi|146303804|ref|YP_001191120.1|	-	4.1	6.9	19.0	5.4	6.5	4.6	2.2	1	1	1	2	2	2	0	IncA	protein
Exonuc_VII_L	PF02601.10	gi|146303804|ref|YP_001191120.1|	-	4.6	6.3	10.1	6.5	5.8	7.0	1.3	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
MerR-DNA-bind	PF09278.6	gi|146303804|ref|YP_001191120.1|	-	5	7.5	7.8	33	4.9	1.5	3.3	1	1	1	2	2	2	0	MerR,	DNA	binding
Ribosomal_S30AE	PF02482.14	gi|146303804|ref|YP_001191120.1|	-	7	7.1	16.0	12	6.3	0.4	4.7	1	1	3	4	4	4	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
DUF4257	PF14074.1	gi|146303805|ref|YP_001191121.1|	-	0.47	10.1	0.1	0.47	10.1	0.1	3.0	3	1	0	3	3	3	0	Protein	of	unknown	function	(DUF4257)
ABC_tran	PF00005.22	gi|146303806|ref|YP_001191122.1|	-	3.4e-48	163.4	0.0	1.8e-23	83.3	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|146303806|ref|YP_001191122.1|	-	2.2e-21	77.0	0.5	7.6e-06	26.0	0.0	4.1	3	1	1	4	4	4	4	AAA	domain
AAA_29	PF13555.1	gi|146303806|ref|YP_001191122.1|	-	1.7e-11	43.4	1.6	0.00015	21.1	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|146303806|ref|YP_001191122.1|	-	1.1e-10	41.1	0.7	0.00041	19.6	0.0	4.0	2	2	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_16	PF13191.1	gi|146303806|ref|YP_001191122.1|	-	3.5e-09	36.9	0.1	0.00023	21.2	0.1	2.4	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146303806|ref|YP_001191122.1|	-	1.3e-08	35.4	0.0	1.8e-05	25.1	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|146303806|ref|YP_001191122.1|	-	2.5e-08	33.7	0.1	0.057	12.8	0.0	3.9	4	1	0	4	4	4	3	AAA-like	domain
DUF258	PF03193.11	gi|146303806|ref|YP_001191122.1|	-	1.2e-07	31.0	0.4	0.006	15.7	0.0	2.2	2	0	0	2	2	2	2	Protein	of	unknown	function,	DUF258
NACHT	PF05729.7	gi|146303806|ref|YP_001191122.1|	-	1.5e-06	27.9	0.2	0.021	14.5	0.0	2.7	3	0	0	3	3	2	2	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|146303806|ref|YP_001191122.1|	-	2.4e-06	27.1	0.3	0.01	15.3	0.0	2.3	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
UPF0079	PF02367.12	gi|146303806|ref|YP_001191122.1|	-	5.7e-06	25.9	1.1	0.00037	20.1	0.2	2.4	2	0	0	2	2	2	1	Uncharacterised	P-loop	hydrolase	UPF0079
AAA_22	PF13401.1	gi|146303806|ref|YP_001191122.1|	-	6.7e-06	26.2	2.5	0.13	12.4	0.1	3.3	2	2	0	2	2	2	2	AAA	domain
ABC_ATPase	PF09818.4	gi|146303806|ref|YP_001191122.1|	-	8.5e-06	24.6	1.3	0.39	9.2	0.1	4.2	4	0	0	4	4	4	1	Predicted	ATPase	of	the	ABC	class
Miro	PF08477.8	gi|146303806|ref|YP_001191122.1|	-	1.1e-05	25.9	0.9	0.21	12.0	0.2	2.5	2	0	0	2	2	2	2	Miro-like	protein
AAA_25	PF13481.1	gi|146303806|ref|YP_001191122.1|	-	1.1e-05	24.9	0.1	0.17	11.2	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303806|ref|YP_001191122.1|	-	1.7e-05	24.0	0.0	0.031	13.3	0.0	3.4	4	0	0	4	4	4	1	AAA	ATPase	domain
SbcCD_C	PF13558.1	gi|146303806|ref|YP_001191122.1|	-	3.5e-05	23.6	0.0	0.0034	17.2	0.0	3.1	2	1	0	2	2	2	1	Putative	exonuclease	SbcCD,	C	subunit
Mg_chelatase	PF01078.16	gi|146303806|ref|YP_001191122.1|	-	4.2e-05	22.7	0.1	0.066	12.3	0.0	2.2	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
MobB	PF03205.9	gi|146303806|ref|YP_001191122.1|	-	4.4e-05	23.2	0.1	0.29	10.8	0.0	2.7	2	0	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|146303806|ref|YP_001191122.1|	-	6.3e-05	22.8	0.0	0.58	10.0	0.0	2.8	3	0	0	3	3	2	2	AAA	domain
AAA_30	PF13604.1	gi|146303806|ref|YP_001191122.1|	-	7.3e-05	22.4	0.0	0.23	11.0	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
MMR_HSR1	PF01926.18	gi|146303806|ref|YP_001191122.1|	-	8.4e-05	22.5	0.0	0.49	10.3	0.0	2.5	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
PduV-EutP	PF10662.4	gi|146303806|ref|YP_001191122.1|	-	8.5e-05	22.0	0.6	0.14	11.6	0.1	2.5	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
T2SE	PF00437.15	gi|146303806|ref|YP_001191122.1|	-	0.00012	21.0	1.0	0.37	9.6	0.0	2.5	2	0	0	2	2	2	2	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|146303806|ref|YP_001191122.1|	-	0.00016	21.3	0.4	0.25	11.1	0.0	3.2	3	1	0	3	3	2	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|146303806|ref|YP_001191122.1|	-	0.00023	21.9	2.0	0.33	11.7	0.0	2.8	2	1	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|146303806|ref|YP_001191122.1|	-	0.00031	20.5	0.0	0.051	13.2	0.0	2.3	2	0	0	2	2	2	1	Archaeal	ATPase
NB-ARC	PF00931.17	gi|146303806|ref|YP_001191122.1|	-	0.00033	19.6	0.4	0.059	12.2	0.1	2.2	2	0	0	2	2	2	1	NB-ARC	domain
AAA_24	PF13479.1	gi|146303806|ref|YP_001191122.1|	-	0.00048	19.7	0.7	0.2	11.1	0.0	2.6	2	0	0	2	2	2	1	AAA	domain
AAA_18	PF13238.1	gi|146303806|ref|YP_001191122.1|	-	0.00067	19.9	0.1	2.1	8.6	0.0	2.9	3	0	0	3	3	2	1	AAA	domain
DLIC	PF05783.6	gi|146303806|ref|YP_001191122.1|	-	0.00083	18.1	0.5	0.23	10.0	0.0	2.2	2	0	0	2	2	2	1	Dynein	light	intermediate	chain	(DLIC)
NTPase_1	PF03266.10	gi|146303806|ref|YP_001191122.1|	-	0.00088	19.0	0.7	0.86	9.2	0.0	2.8	3	0	0	3	3	2	1	NTPase
DUF87	PF01935.12	gi|146303806|ref|YP_001191122.1|	-	0.00095	19.0	0.8	0.023	14.5	0.1	2.4	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
RNA_helicase	PF00910.17	gi|146303806|ref|YP_001191122.1|	-	0.001	19.2	0.0	2.5	8.3	0.0	2.7	2	0	0	2	2	2	0	RNA	helicase
AAA_5	PF07728.9	gi|146303806|ref|YP_001191122.1|	-	0.0011	18.6	0.4	0.97	9.1	0.0	2.6	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
cobW	PF02492.14	gi|146303806|ref|YP_001191122.1|	-	0.0014	18.1	0.9	0.16	11.4	0.1	2.4	2	0	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
ATP_bind_1	PF03029.12	gi|146303806|ref|YP_001191122.1|	-	0.0015	18.1	0.4	0.56	9.6	0.1	2.8	3	0	0	3	3	3	1	Conserved	hypothetical	ATP	binding	protein
AAA	PF00004.24	gi|146303806|ref|YP_001191122.1|	-	0.0021	18.2	0.0	0.27	11.4	0.0	2.4	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Pox_A32	PF04665.7	gi|146303806|ref|YP_001191122.1|	-	0.0044	16.3	0.1	0.21	10.8	0.0	2.4	2	0	0	2	2	2	1	Poxvirus	A32	protein
Zeta_toxin	PF06414.7	gi|146303806|ref|YP_001191122.1|	-	0.0046	16.0	0.1	0.79	8.7	0.0	2.8	3	0	0	3	3	3	1	Zeta	toxin
DUF815	PF05673.8	gi|146303806|ref|YP_001191122.1|	-	0.01	14.7	1.1	1.6	7.6	0.1	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
KaiC	PF06745.8	gi|146303806|ref|YP_001191122.1|	-	0.011	14.9	0.5	1.1	8.2	0.0	2.7	3	0	0	3	3	2	0	KaiC
AAA_28	PF13521.1	gi|146303806|ref|YP_001191122.1|	-	0.017	15.1	0.0	3.5	7.5	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
PIF1	PF05970.9	gi|146303806|ref|YP_001191122.1|	-	0.021	13.7	0.0	2.8	6.7	0.0	2.2	2	0	0	2	2	2	0	PIF1-like	helicase
SRP54	PF00448.17	gi|146303806|ref|YP_001191122.1|	-	0.024	14.0	0.4	0.91	8.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
G-alpha	PF00503.15	gi|146303806|ref|YP_001191122.1|	-	0.031	12.9	0.4	0.61	8.7	0.1	2.1	2	0	0	2	2	2	0	G-protein	alpha	subunit
AAA_14	PF13173.1	gi|146303806|ref|YP_001191122.1|	-	0.031	14.1	0.4	2.1	8.2	0.0	2.8	2	2	1	3	3	2	0	AAA	domain
Septin	PF00735.13	gi|146303806|ref|YP_001191122.1|	-	0.031	13.2	0.7	0.98	8.3	0.1	2.1	2	0	0	2	2	2	0	Septin
ATP-synt_ab	PF00006.20	gi|146303806|ref|YP_001191122.1|	-	0.035	13.5	0.2	5	6.5	0.0	2.6	2	1	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
IstB_IS21	PF01695.12	gi|146303806|ref|YP_001191122.1|	-	0.037	13.4	0.1	8.8	5.7	0.0	2.6	3	0	0	3	3	2	0	IstB-like	ATP	binding	protein
PhoH	PF02562.11	gi|146303806|ref|YP_001191122.1|	-	0.08	12.1	0.0	4.1	6.5	0.0	2.5	3	0	0	3	3	2	0	PhoH-like	protein
SH3_2	PF07653.12	gi|146303806|ref|YP_001191122.1|	-	0.082	12.4	0.0	16	5.0	0.0	2.5	2	0	0	2	2	2	0	Variant	SH3	domain
Gtr1_RagA	PF04670.7	gi|146303806|ref|YP_001191122.1|	-	0.12	11.5	1.9	5.2	6.1	0.1	2.2	2	0	0	2	2	2	0	Gtr1/RagA	G	protein	conserved	region
PRK	PF00485.13	gi|146303806|ref|YP_001191122.1|	-	0.14	11.7	0.0	18	4.8	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Thymidylate_kin	PF02223.12	gi|146303806|ref|YP_001191122.1|	-	0.16	11.3	0.1	2.4	7.5	0.0	2.2	2	0	0	2	2	2	0	Thymidylate	kinase
GTP_EFTU	PF00009.22	gi|146303806|ref|YP_001191122.1|	-	0.21	11.0	0.4	12	5.2	0.0	2.4	3	0	0	3	3	2	0	Elongation	factor	Tu	GTP	binding	domain
AAA_13	PF13166.1	gi|146303806|ref|YP_001191122.1|	-	0.25	9.7	0.0	2.5	6.4	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
KH_2	PF07650.12	gi|146303806|ref|YP_001191122.1|	-	0.28	10.7	2.1	12	5.5	0.2	2.8	2	0	0	2	2	2	0	KH	domain
CPT	PF07931.7	gi|146303806|ref|YP_001191122.1|	-	0.32	10.5	1.8	17	5.0	0.0	2.9	3	0	0	3	3	3	0	Chloramphenicol	phosphotransferase-like	protein
Dynamin_N	PF00350.18	gi|146303806|ref|YP_001191122.1|	-	0.42	10.3	4.5	8.1	6.2	0.0	2.5	2	0	0	2	2	2	0	Dynamin	family
CbiQ	PF02361.11	gi|146303807|ref|YP_001191123.1|	-	3.1e-09	36.7	19.8	7e-09	35.5	13.7	1.7	1	1	0	1	1	1	1	Cobalt	transport	protein
Phosphoesterase	PF04185.9	gi|146303808|ref|YP_001191124.1|	-	3.7e-65	220.5	0.6	3.1e-64	217.5	0.4	1.9	1	1	0	1	1	1	1	Phosphoesterase	family
Sulfatase	PF00884.18	gi|146303808|ref|YP_001191124.1|	-	0.013	14.7	0.0	0.44	9.6	0.0	2.1	2	0	0	2	2	2	0	Sulfatase
UbiA	PF01040.13	gi|146303809|ref|YP_001191125.1|	-	8.2e-43	146.4	16.6	1e-42	146.1	11.5	1.0	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
TPP_enzyme_N	PF02776.13	gi|146303810|ref|YP_001191126.1|	-	1.9e-45	154.4	0.0	6.8e-45	152.6	0.0	2.0	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|146303810|ref|YP_001191126.1|	-	5.1e-34	116.9	0.0	9.8e-34	116.0	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
TPP_enzyme_C	PF02775.16	gi|146303810|ref|YP_001191126.1|	-	3.7e-31	107.7	0.0	6.3e-30	103.7	0.0	2.8	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
Pyr_redox_2	PF07992.9	gi|146303812|ref|YP_001191128.1|	-	4.5e-15	56.0	0.3	1.2e-13	51.3	0.4	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146303812|ref|YP_001191128.1|	-	0.00011	22.5	8.4	0.025	15.0	0.7	2.6	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303812|ref|YP_001191128.1|	-	0.01	15.8	0.2	0.022	14.7	0.2	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.19	gi|146303812|ref|YP_001191128.1|	-	0.011	14.7	2.6	0.029	13.2	0.5	2.2	2	1	0	2	2	2	0	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.1	gi|146303812|ref|YP_001191128.1|	-	0.013	15.2	0.2	0.55	9.9	0.1	2.5	2	0	0	2	2	2	0	FAD-NAD(P)-binding
Trp_halogenase	PF04820.9	gi|146303812|ref|YP_001191128.1|	-	0.016	13.8	1.9	0.025	13.2	1.0	1.6	1	1	0	1	1	1	0	Tryptophan	halogenase
ThiF	PF00899.16	gi|146303812|ref|YP_001191128.1|	-	0.056	13.2	0.1	0.13	12.0	0.1	1.6	1	0	0	1	1	1	0	ThiF	family
FAD_binding_2	PF00890.19	gi|146303812|ref|YP_001191128.1|	-	0.28	9.9	1.5	0.46	9.2	0.5	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|146303812|ref|YP_001191128.1|	-	0.61	10.1	3.4	11	5.9	0.7	3.1	3	1	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
AAA_14	PF13173.1	gi|146303813|ref|YP_001191129.1|	-	7.7e-22	77.5	0.0	1.8e-21	76.3	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.1	gi|146303813|ref|YP_001191129.1|	-	3.4e-09	36.7	0.0	1e-08	35.2	0.0	1.7	2	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4143)
AAA_16	PF13191.1	gi|146303813|ref|YP_001191129.1|	-	1.3e-05	25.2	0.0	0.00054	19.9	0.0	2.4	2	1	0	2	2	2	1	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|146303813|ref|YP_001191129.1|	-	8.1e-05	22.4	0.2	0.00036	20.2	0.0	2.1	2	1	1	3	3	3	1	Archaeal	ATPase
FtsK_SpoIIIE	PF01580.13	gi|146303813|ref|YP_001191129.1|	-	0.00037	20.0	0.0	0.00082	18.8	0.0	1.5	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA	PF00004.24	gi|146303813|ref|YP_001191129.1|	-	0.00093	19.3	0.0	0.0033	17.6	0.0	1.9	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|146303813|ref|YP_001191129.1|	-	0.0045	16.6	0.0	0.011	15.3	0.0	1.7	1	0	0	1	1	1	1	NACHT	domain
AAA_22	PF13401.1	gi|146303813|ref|YP_001191129.1|	-	0.01	15.9	0.0	0.053	13.6	0.0	2.1	2	1	1	3	3	3	0	AAA	domain
RNA_helicase	PF00910.17	gi|146303813|ref|YP_001191129.1|	-	0.012	15.7	0.0	0.028	14.5	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
DUF2410	PF10307.4	gi|146303813|ref|YP_001191129.1|	-	0.014	14.7	0.1	0.03	13.6	0.0	1.5	1	0	0	1	1	1	0	Hypothetical	protein	(DUF2410)
AAA_25	PF13481.1	gi|146303813|ref|YP_001191129.1|	-	0.17	11.2	0.0	0.29	10.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Lactate_perm	PF02652.9	gi|146303814|ref|YP_001191130.1|	-	2.4e-100	336.5	38.7	4.5e-100	335.6	26.8	1.4	1	1	0	1	1	1	1	L-lactate	permease
Malate_synthase	PF01274.17	gi|146303815|ref|YP_001191131.1|	-	2.5e-30	104.9	0.0	6e-27	93.8	0.0	2.8	3	0	0	3	3	3	2	Malate	synthase
DUF2258	PF10015.4	gi|146303816|ref|YP_001191132.1|	-	4.2e-30	103.3	2.6	4.2e-30	103.3	1.8	1.7	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
HALZ	PF02183.13	gi|146303816|ref|YP_001191132.1|	-	0.0039	16.8	2.0	0.01	15.5	1.4	1.8	1	0	0	1	1	1	1	Homeobox	associated	leucine	zipper
MutS_II	PF05188.12	gi|146303816|ref|YP_001191132.1|	-	0.024	14.6	1.0	0.04	13.9	0.7	1.3	1	0	0	1	1	1	0	MutS	domain	II
bZIP_1	PF00170.16	gi|146303816|ref|YP_001191132.1|	-	0.045	13.7	3.0	0.045	13.7	2.1	2.1	2	0	0	2	2	2	0	bZIP	transcription	factor
Peptidase_M26_N	PF05342.9	gi|146303816|ref|YP_001191132.1|	-	0.047	12.6	2.5	2.6	6.9	0.1	2.9	2	1	1	3	3	3	0	M26	IgA1-specific	Metallo-endopeptidase	N-terminal	region
DUF2553	PF10830.3	gi|146303816|ref|YP_001191132.1|	-	0.087	13.3	0.6	0.18	12.3	0.4	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2553)
FlaC_arch	PF05377.6	gi|146303816|ref|YP_001191132.1|	-	0.21	11.4	3.4	0.18	11.7	0.5	2.2	2	0	0	2	2	2	0	Flagella	accessory	protein	C	(FlaC)
DUF904	PF06005.7	gi|146303816|ref|YP_001191132.1|	-	0.24	11.6	7.8	0.87	9.9	5.4	2.1	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
Rootletin	PF15035.1	gi|146303816|ref|YP_001191132.1|	-	0.26	11.2	7.6	0.39	10.6	5.3	1.7	1	1	0	1	1	1	0	Ciliary	rootlet	component,	centrosome	cohesion
UPF0449	PF15136.1	gi|146303816|ref|YP_001191132.1|	-	0.48	10.6	3.3	1.6	9.0	2.1	2.0	2	1	0	2	2	2	0	Uncharacterised	protein	family	UPF0449
DivIVA	PF05103.8	gi|146303816|ref|YP_001191132.1|	-	0.56	10.2	7.5	4.4	7.3	1.8	2.9	1	1	2	3	3	3	0	DivIVA	protein
DUF1640	PF07798.6	gi|146303816|ref|YP_001191132.1|	-	2.4	8.1	9.1	18	5.3	6.3	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1640)
DUF972	PF06156.8	gi|146303816|ref|YP_001191132.1|	-	7.3	6.9	8.4	2.5	8.4	1.6	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF972)
IFP_35_N	PF07334.8	gi|146303816|ref|YP_001191132.1|	-	8.2	6.4	8.2	2.2	8.3	2.9	2.0	1	1	1	2	2	2	0	Interferon-induced	35	kDa	protein	(IFP	35)	N-terminus
NTP_transf_2	PF01909.18	gi|146303817|ref|YP_001191133.1|	-	3e-11	43.5	0.2	3.6e-11	43.2	0.1	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
DNA_pol_B_palm	PF14792.1	gi|146303817|ref|YP_001191133.1|	-	0.038	14.0	0.0	0.098	12.7	0.0	1.7	2	0	0	2	2	2	0	DNA	polymerase	beta	palm
DUF294	PF03445.8	gi|146303817|ref|YP_001191133.1|	-	0.086	12.4	0.0	0.13	11.8	0.0	1.3	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|146303818|ref|YP_001191134.1|	-	1.7e-37	127.9	0.1	1.9e-37	127.7	0.1	1.0	1	0	0	1	1	1	1	HEPN	domain
SBP_bac_5	PF00496.17	gi|146303819|ref|YP_001191135.1|	-	1.6e-60	204.9	1.0	6.3e-60	202.9	0.7	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
Glycoprotein_G	PF00802.14	gi|146303819|ref|YP_001191135.1|	-	0.0078	15.3	6.0	0.012	14.7	4.2	1.2	1	0	0	1	1	1	1	Pneumovirus	attachment	glycoprotein	G
PINIT	PF14324.1	gi|146303819|ref|YP_001191135.1|	-	0.11	12.5	3.0	11	6.0	0.4	2.4	2	0	0	2	2	2	0	PINIT	domain
BPD_transp_1	PF00528.17	gi|146303820|ref|YP_001191136.1|	-	5.5e-43	146.6	7.0	5.5e-43	146.6	4.8	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3733	PF12534.3	gi|146303820|ref|YP_001191136.1|	-	0.24	10.7	1.3	0.46	9.8	0.2	2.0	2	0	0	2	2	2	0	Leucine-rich	repeat	containing	protein	8
BPD_transp_1	PF00528.17	gi|146303821|ref|YP_001191137.1|	-	9.6e-29	100.2	12.8	9.6e-29	100.2	8.8	1.9	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|146303821|ref|YP_001191137.1|	-	0.011	15.1	1.9	0.011	15.1	1.3	3.1	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.22	gi|146303822|ref|YP_001191138.1|	-	4.9e-30	104.6	0.0	6.6e-30	104.1	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146303822|ref|YP_001191138.1|	-	1.7e-21	76.3	0.2	2.8e-21	75.6	0.1	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146303822|ref|YP_001191138.1|	-	2.6e-10	40.7	1.0	1.9e-05	24.7	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146303822|ref|YP_001191138.1|	-	5.2e-07	29.1	0.2	2.7e-06	26.7	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|146303822|ref|YP_001191138.1|	-	3.5e-05	23.2	0.0	7.2e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|146303822|ref|YP_001191138.1|	-	0.0014	18.6	0.2	0.0027	17.7	0.1	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146303822|ref|YP_001191138.1|	-	0.0022	18.3	0.0	0.003	17.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|146303822|ref|YP_001191138.1|	-	0.0023	16.7	0.4	0.004	15.9	0.0	1.5	2	0	0	2	2	2	1	ArgK	protein
AAA_25	PF13481.1	gi|146303822|ref|YP_001191138.1|	-	0.0036	16.7	0.1	0.023	14.1	0.0	2.2	3	0	0	3	3	3	1	AAA	domain
AAA_22	PF13401.1	gi|146303822|ref|YP_001191138.1|	-	0.0064	16.6	0.1	0.014	15.5	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_10	PF12846.2	gi|146303822|ref|YP_001191138.1|	-	0.008	15.6	0.5	0.045	13.1	0.2	1.8	1	1	0	2	2	2	1	AAA-like	domain
NACHT	PF05729.7	gi|146303822|ref|YP_001191138.1|	-	0.011	15.4	0.0	0.021	14.4	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
MMR_HSR1	PF01926.18	gi|146303822|ref|YP_001191138.1|	-	0.011	15.6	0.0	0.022	14.7	0.0	1.5	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|146303822|ref|YP_001191138.1|	-	0.012	15.2	0.0	0.022	14.4	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF87	PF01935.12	gi|146303822|ref|YP_001191138.1|	-	0.016	15.0	0.1	0.031	14.1	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
FtsK_SpoIIIE	PF01580.13	gi|146303822|ref|YP_001191138.1|	-	0.016	14.7	0.0	0.029	13.8	0.0	1.3	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
AAA_17	PF13207.1	gi|146303822|ref|YP_001191138.1|	-	0.018	15.8	0.9	0.044	14.6	0.4	1.9	2	1	0	2	2	1	0	AAA	domain
NB-ARC	PF00931.17	gi|146303822|ref|YP_001191138.1|	-	0.025	13.4	0.3	0.041	12.7	0.2	1.2	1	0	0	1	1	1	0	NB-ARC	domain
MIG-14_Wnt-bd	PF06664.7	gi|146303822|ref|YP_001191138.1|	-	0.026	13.3	0.0	0.036	12.8	0.0	1.1	1	0	0	1	1	1	0	Wnt-binding	factor	required	for	Wnt	secretion
Mg_chelatase	PF01078.16	gi|146303822|ref|YP_001191138.1|	-	0.037	13.1	0.0	0.074	12.2	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
AAA_33	PF13671.1	gi|146303822|ref|YP_001191138.1|	-	0.038	13.8	0.0	0.055	13.3	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|146303822|ref|YP_001191138.1|	-	0.044	12.9	0.0	0.088	11.9	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA_19	PF13245.1	gi|146303822|ref|YP_001191138.1|	-	0.046	13.4	0.1	0.17	11.6	0.1	1.9	2	0	0	2	2	1	0	Part	of	AAA	domain
ELFV_dehydrog_N	PF02812.13	gi|146303822|ref|YP_001191138.1|	-	0.053	13.0	0.0	0.092	12.3	0.0	1.4	1	0	0	1	1	1	0	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
ABC_ATPase	PF09818.4	gi|146303822|ref|YP_001191138.1|	-	0.063	11.8	3.5	1.9	7.0	0.1	2.4	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.1	gi|146303822|ref|YP_001191138.1|	-	0.064	13.5	0.3	0.12	12.6	0.2	1.6	1	1	0	1	1	1	0	AAA	domain
PRK	PF00485.13	gi|146303822|ref|YP_001191138.1|	-	0.1	12.1	0.1	0.15	11.5	0.0	1.3	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
RNA_helicase	PF00910.17	gi|146303822|ref|YP_001191138.1|	-	0.11	12.6	0.0	0.24	11.6	0.0	1.7	1	0	0	1	1	1	0	RNA	helicase
NTPase_1	PF03266.10	gi|146303822|ref|YP_001191138.1|	-	0.12	12.1	0.1	0.21	11.2	0.1	1.4	1	0	0	1	1	1	0	NTPase
ATP-synt_ab	PF00006.20	gi|146303822|ref|YP_001191138.1|	-	0.13	11.6	0.1	0.38	10.2	0.1	1.5	1	1	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
T2SE	PF00437.15	gi|146303822|ref|YP_001191138.1|	-	0.2	10.5	1.0	0.33	9.8	0.1	1.7	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ABC_tran	PF00005.22	gi|146303823|ref|YP_001191139.1|	-	1.8e-30	106.0	0.0	2.8e-30	105.3	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146303823|ref|YP_001191139.1|	-	1.3e-13	51.0	0.1	2.3e-13	50.2	0.0	1.4	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146303823|ref|YP_001191139.1|	-	4.2e-13	49.9	2.0	3.2e-09	37.1	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_22	PF13401.1	gi|146303823|ref|YP_001191139.1|	-	0.00014	21.9	0.1	0.063	13.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|146303823|ref|YP_001191139.1|	-	0.00015	21.0	0.9	0.092	11.9	0.0	2.1	1	1	1	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|146303823|ref|YP_001191139.1|	-	0.00023	20.6	0.5	0.00041	19.8	0.3	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.1	gi|146303823|ref|YP_001191139.1|	-	0.00026	21.0	0.4	0.00037	20.5	0.3	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|146303823|ref|YP_001191139.1|	-	0.0014	17.8	0.8	0.081	11.9	0.1	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_25	PF13481.1	gi|146303823|ref|YP_001191139.1|	-	0.0025	17.2	0.4	0.0056	16.1	0.3	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|146303823|ref|YP_001191139.1|	-	0.0029	17.9	0.1	0.012	15.8	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
AAA_13	PF13166.1	gi|146303823|ref|YP_001191139.1|	-	0.018	13.5	0.4	0.52	8.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
AAA_10	PF12846.2	gi|146303823|ref|YP_001191139.1|	-	0.02	14.3	0.1	0.04	13.3	0.0	1.5	2	0	0	2	2	2	0	AAA-like	domain
ATP-synt_ab	PF00006.20	gi|146303823|ref|YP_001191139.1|	-	0.023	14.2	0.1	0.026	14.0	0.1	1.3	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
DUF258	PF03193.11	gi|146303823|ref|YP_001191139.1|	-	0.049	12.8	0.1	0.1	11.7	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
MMR_HSR1	PF01926.18	gi|146303823|ref|YP_001191139.1|	-	0.063	13.2	0.2	0.095	12.6	0.1	1.5	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA	PF00004.24	gi|146303823|ref|YP_001191139.1|	-	0.082	13.1	0.5	0.3	11.3	0.3	1.9	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SE	PF00437.15	gi|146303823|ref|YP_001191139.1|	-	0.086	11.7	0.5	0.16	10.8	0.3	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.7	gi|146303823|ref|YP_001191139.1|	-	0.091	12.4	0.2	0.17	11.5	0.2	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_5	PF07728.9	gi|146303823|ref|YP_001191139.1|	-	0.097	12.3	0.2	0.41	10.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
SbcCD_C	PF13558.1	gi|146303823|ref|YP_001191139.1|	-	0.1	12.4	0.0	0.35	10.8	0.0	1.9	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
IstB_IS21	PF01695.12	gi|146303823|ref|YP_001191139.1|	-	0.11	11.9	0.2	0.39	10.0	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
MobB	PF03205.9	gi|146303823|ref|YP_001191139.1|	-	0.11	12.1	0.1	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Sigma54_activat	PF00158.21	gi|146303823|ref|YP_001191139.1|	-	0.13	11.6	0.5	0.91	8.9	0.0	2.3	2	1	0	2	2	2	0	Sigma-54	interaction	domain
DUF87	PF01935.12	gi|146303823|ref|YP_001191139.1|	-	0.2	11.4	1.2	0.37	10.5	0.8	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	DUF87
Arch_ATPase	PF01637.13	gi|146303824|ref|YP_001191140.1|	-	1e-30	107.1	1.9	6.4e-30	104.5	1.3	2.3	1	1	0	1	1	1	1	Archaeal	ATPase
DUF234	PF03008.9	gi|146303824|ref|YP_001191140.1|	-	3e-22	78.6	0.8	1.4e-21	76.5	0.6	2.2	1	0	0	1	1	1	1	Archaea	bacterial	proteins	of	unknown	function
AAA_14	PF13173.1	gi|146303824|ref|YP_001191140.1|	-	7.3e-09	35.6	0.1	1.3e-08	34.8	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146303824|ref|YP_001191140.1|	-	6.1e-06	26.4	0.0	1.7e-05	24.9	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|146303824|ref|YP_001191140.1|	-	6.6e-05	22.9	0.0	0.00026	21.0	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
Peptidase_M19	PF01244.16	gi|146303825|ref|YP_001191141.1|	-	4.8e-68	229.4	0.0	5.4e-68	229.2	0.0	1.0	1	0	0	1	1	1	1	Membrane	dipeptidase	(Peptidase	family	M19)
DUF421	PF04239.7	gi|146303825|ref|YP_001191141.1|	-	0.01	15.3	0.0	0.17	11.3	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF421)
Acetyltransf_1	PF00583.19	gi|146303826|ref|YP_001191142.1|	-	9.1e-15	54.4	0.2	1.2e-14	54.0	0.1	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_4	PF13420.1	gi|146303826|ref|YP_001191142.1|	-	3.5e-12	46.5	0.0	4.2e-12	46.2	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|146303826|ref|YP_001191142.1|	-	8.4e-11	42.0	0.0	9.8e-11	41.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|146303826|ref|YP_001191142.1|	-	2.6e-10	40.3	0.1	3.6e-10	39.8	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|146303826|ref|YP_001191142.1|	-	3.4e-10	39.8	0.0	4.8e-10	39.3	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|146303826|ref|YP_001191142.1|	-	3.4e-07	29.9	0.0	6.4e-07	29.0	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_3	PF13302.1	gi|146303826|ref|YP_001191142.1|	-	1.4e-05	25.2	0.0	1.6e-05	25.0	0.0	1.0	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|146303826|ref|YP_001191142.1|	-	3.2e-05	23.8	0.0	4.1e-05	23.5	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|146303826|ref|YP_001191142.1|	-	0.00026	20.8	0.0	0.00044	20.0	0.0	1.4	1	0	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_13	PF13880.1	gi|146303826|ref|YP_001191142.1|	-	0.0079	15.9	0.0	0.014	15.1	0.0	1.4	1	0	0	1	1	1	1	ESCO1/2	acetyl-transferase
DUF3749	PF12568.3	gi|146303826|ref|YP_001191142.1|	-	0.0094	15.5	0.0	0.013	15.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Mec-17	PF05301.6	gi|146303826|ref|YP_001191142.1|	-	0.08	12.8	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Touch	receptor	neuron	protein	Mec-17
MOZ_SAS	PF01853.13	gi|146303826|ref|YP_001191142.1|	-	0.11	11.6	0.0	0.15	11.3	0.0	1.2	1	0	0	1	1	1	0	MOZ/SAS	family
Malic_M	PF03949.10	gi|146303827|ref|YP_001191143.1|	-	8e-63	212.3	0.1	1e-62	212.0	0.1	1.1	1	0	0	1	1	1	1	Malic	enzyme,	NAD	binding	domain
malic	PF00390.14	gi|146303827|ref|YP_001191143.1|	-	1.1e-27	96.8	0.0	6.3e-25	87.8	0.0	2.5	1	1	0	1	1	1	1	Malic	enzyme,	N-terminal	domain
EAL	PF00563.15	gi|146303827|ref|YP_001191143.1|	-	0.01	15.3	0.0	0.036	13.5	0.0	1.8	2	0	0	2	2	2	0	EAL	domain
THF_DHG_CYH_C	PF02882.14	gi|146303827|ref|YP_001191143.1|	-	0.065	12.3	0.0	0.21	10.6	0.0	1.9	1	1	1	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Shikimate_DH	PF01488.15	gi|146303827|ref|YP_001191143.1|	-	0.098	12.7	0.1	0.36	10.9	0.0	1.9	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Sugar_tr	PF00083.19	gi|146303828|ref|YP_001191144.1|	-	2.9e-31	108.5	28.5	1.6e-28	99.5	19.7	2.2	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303828|ref|YP_001191144.1|	-	4.7e-29	101.1	69.5	4.9e-25	87.9	28.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PIG-L	PF02585.12	gi|146303829|ref|YP_001191145.1|	-	2.2e-21	76.6	0.0	3.3e-21	76.1	0.0	1.2	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
Glyco_trans_4_2	PF13477.1	gi|146303829|ref|YP_001191145.1|	-	0.015	15.0	0.1	0.081	12.7	0.0	2.2	3	0	0	3	3	3	0	Glycosyl	transferase	4-like
Methyltransf_6	PF03737.10	gi|146303830|ref|YP_001191146.1|	-	2.1e-29	102.3	0.4	2.8e-29	101.9	0.2	1.1	1	0	0	1	1	1	1	Demethylmenaquinone	methyltransferase
2-Hacid_dh_C	PF02826.14	gi|146303832|ref|YP_001191148.1|	-	2.9e-65	218.7	0.0	4.3e-65	218.1	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|146303832|ref|YP_001191148.1|	-	7.4e-22	77.2	0.0	9.2e-22	76.9	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|146303832|ref|YP_001191148.1|	-	1.1e-06	28.6	0.0	4.1e-06	26.7	0.0	1.8	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|146303832|ref|YP_001191148.1|	-	6.3e-06	26.1	0.0	1.6e-05	24.7	0.0	1.7	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
UDPG_MGDP_dh_C	PF03720.10	gi|146303832|ref|YP_001191148.1|	-	0.00023	21.2	0.0	0.013	15.6	0.0	2.4	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
ELFV_dehydrog	PF00208.16	gi|146303832|ref|YP_001191148.1|	-	0.0017	17.9	0.0	0.0028	17.2	0.0	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
IlvN	PF07991.7	gi|146303832|ref|YP_001191148.1|	-	0.0035	16.7	0.0	0.0071	15.7	0.0	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|146303832|ref|YP_001191148.1|	-	0.04	14.3	0.1	0.17	12.3	0.0	2.1	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.15	gi|146303832|ref|YP_001191148.1|	-	0.083	12.9	0.3	0.44	10.6	0.0	2.1	2	0	0	2	2	2	0	Shikimate	/	quinate	5-dehydrogenase
NAD_binding_7	PF13241.1	gi|146303832|ref|YP_001191148.1|	-	0.11	12.7	0.0	0.29	11.4	0.0	1.7	2	0	0	2	2	2	0	Putative	NAD(P)-binding
FCD	PF07729.7	gi|146303833|ref|YP_001191149.1|	-	2e-29	102.4	2.2	2.8e-29	101.9	1.5	1.2	1	0	0	1	1	1	1	FCD	domain
GntR	PF00392.16	gi|146303833|ref|YP_001191149.1|	-	9.7e-16	56.9	0.3	2.9e-15	55.4	0.0	2.0	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
HTH_DeoR	PF08220.7	gi|146303833|ref|YP_001191149.1|	-	0.0011	18.4	0.5	0.0037	16.7	0.1	2.1	2	1	0	2	2	2	1	DeoR-like	helix-turn-helix	domain
PaaX	PF07848.7	gi|146303833|ref|YP_001191149.1|	-	0.0042	17.0	0.1	0.01	15.8	0.0	1.7	1	1	0	1	1	1	1	PaaX-like	protein
RepL	PF05732.6	gi|146303833|ref|YP_001191149.1|	-	0.0044	16.2	0.1	0.0064	15.7	0.0	1.5	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
Penicillinase_R	PF03965.11	gi|146303833|ref|YP_001191149.1|	-	0.0044	17.0	0.3	0.038	14.0	0.2	2.3	1	1	1	2	2	2	1	Penicillinase	repressor
TrmB	PF01978.14	gi|146303833|ref|YP_001191149.1|	-	0.012	15.2	0.2	0.048	13.3	0.0	2.0	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_41	PF14502.1	gi|146303833|ref|YP_001191149.1|	-	0.032	13.8	0.0	0.067	12.8	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR	PF01047.17	gi|146303833|ref|YP_001191149.1|	-	0.036	13.7	0.3	0.42	10.3	0.0	2.4	2	0	0	2	2	2	0	MarR	family
HTH_Crp_2	PF13545.1	gi|146303833|ref|YP_001191149.1|	-	0.042	13.6	0.0	0.1	12.3	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_24	PF13412.1	gi|146303833|ref|YP_001191149.1|	-	0.063	12.6	0.1	0.2	11.0	0.0	2.0	2	0	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
Lambda_tail_I	PF06805.7	gi|146303833|ref|YP_001191149.1|	-	0.11	12.2	0.0	0.22	11.3	0.0	1.6	1	0	0	1	1	1	0	Bacteriophage	lambda	tail	assembly	protein	I
Methyltransf_24	PF13578.1	gi|146303834|ref|YP_001191150.1|	-	8.2e-15	55.5	0.0	1.1e-14	55.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CmcI	PF04989.7	gi|146303834|ref|YP_001191150.1|	-	3.9e-06	26.3	0.0	6.1e-06	25.7	0.0	1.3	1	0	0	1	1	1	1	Cephalosporin	hydroxylase
Methyltransf_3	PF01596.12	gi|146303834|ref|YP_001191150.1|	-	0.00029	19.9	0.0	0.00033	19.7	0.0	1.1	1	0	0	1	1	1	1	O-methyltransferase
Fe-ADH	PF00465.14	gi|146303835|ref|YP_001191151.1|	-	3e-42	144.5	0.0	8.6e-42	143.0	0.0	1.6	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.1	gi|146303835|ref|YP_001191151.1|	-	2.2e-09	37.0	0.0	3.1e-09	36.4	0.0	1.2	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|146303835|ref|YP_001191151.1|	-	0.046	12.6	0.1	0.83	8.5	0.1	2.3	2	1	0	2	2	2	0	3-dehydroquinate	synthase
Ald_Xan_dh_C2	PF02738.13	gi|146303836|ref|YP_001191152.1|	-	1.1e-102	344.1	0.1	1.3e-80	271.3	0.0	2.1	1	1	1	2	2	2	2	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146303836|ref|YP_001191152.1|	-	1.2e-11	44.7	0.0	4.1e-11	42.9	0.0	1.9	1	1	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
Sigma70_r3	PF04539.11	gi|146303836|ref|YP_001191152.1|	-	0.25	11.2	1.4	25	4.8	0.0	2.7	2	0	0	2	2	2	0	Sigma-70	region	3
DUF217	PF02697.9	gi|146303837|ref|YP_001191153.1|	-	1.3e-23	83.0	6.2	1.4e-23	82.8	4.3	1.0	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
PqqD	PF05402.7	gi|146303837|ref|YP_001191153.1|	-	0.06	13.3	0.2	0.25	11.3	0.0	1.8	1	1	1	2	2	2	0	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
Mei5	PF10376.4	gi|146303837|ref|YP_001191153.1|	-	0.088	12.3	1.2	0.097	12.1	0.8	1.1	1	0	0	1	1	1	0	Double-strand	recombination	repair	protein
Trp_syntA	PF00290.15	gi|146303837|ref|YP_001191153.1|	-	0.11	11.0	0.0	0.12	10.9	0.0	1.1	1	0	0	1	1	1	0	Tryptophan	synthase	alpha	chain
DUF104	PF01954.11	gi|146303837|ref|YP_001191153.1|	-	0.32	11.0	5.8	4.2	7.4	1.2	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	DUF104
HTH_24	PF13412.1	gi|146303838|ref|YP_001191154.1|	-	3e-07	29.7	0.1	0.0031	16.8	0.0	3.1	3	0	0	3	3	3	2	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.11	gi|146303838|ref|YP_001191154.1|	-	0.005	16.9	0.7	0.011	15.8	0.1	1.8	2	0	0	2	2	2	1	Penicillinase	repressor
HTH_AsnC-type	PF13404.1	gi|146303838|ref|YP_001191154.1|	-	0.011	15.2	0.5	4.9	6.7	0.0	2.9	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303838|ref|YP_001191154.1|	-	0.048	13.4	0.0	6.6	6.6	0.0	3.0	2	2	1	3	3	3	0	Helix-turn-helix	domain
HTH_45	PF14947.1	gi|146303838|ref|YP_001191154.1|	-	0.17	11.7	2.1	2.2	8.1	0.0	3.4	2	2	1	3	3	3	0	Winged	helix-turn-helix
MFS_1	PF07690.11	gi|146303839|ref|YP_001191155.1|	-	4.2e-25	88.2	46.0	1.7e-15	56.5	11.8	2.8	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
LacY_symp	PF01306.14	gi|146303839|ref|YP_001191155.1|	-	4.2e-06	25.5	15.1	0.00012	20.7	4.0	2.2	2	0	0	2	2	2	2	LacY	proton/sugar	symporter
Tir_receptor_C	PF07489.6	gi|146303839|ref|YP_001191155.1|	-	0.077	12.7	0.3	0.13	11.9	0.2	1.3	1	0	0	1	1	1	0	Translocated	intimin	receptor	(Tir)	C-terminus
ABC_tran	PF00005.22	gi|146303840|ref|YP_001191156.1|	-	6.8e-25	87.9	0.0	1.5e-24	86.8	0.0	1.6	2	0	0	2	2	2	1	ABC	transporter
AAA_21	PF13304.1	gi|146303840|ref|YP_001191156.1|	-	6.9e-15	55.7	0.5	2.7e-08	34.1	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303840|ref|YP_001191156.1|	-	1.4e-05	24.3	0.0	0.01	14.9	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_22	PF13401.1	gi|146303840|ref|YP_001191156.1|	-	0.00011	22.3	0.0	0.017	15.2	0.0	2.2	1	1	1	2	2	2	1	AAA	domain
ArgK	PF03308.11	gi|146303840|ref|YP_001191156.1|	-	0.0005	18.9	0.9	0.001	17.9	0.0	1.9	2	1	1	3	3	3	1	ArgK	protein
AAA_23	PF13476.1	gi|146303840|ref|YP_001191156.1|	-	0.0009	19.6	0.2	0.0019	18.5	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|146303840|ref|YP_001191156.1|	-	0.006	16.0	0.1	0.01	15.2	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
AAA_29	PF13555.1	gi|146303840|ref|YP_001191156.1|	-	0.01	15.3	0.5	0.019	14.4	0.4	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ATP_bind_1	PF03029.12	gi|146303840|ref|YP_001191156.1|	-	0.014	14.9	0.0	0.034	13.6	0.0	1.7	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
MobB	PF03205.9	gi|146303840|ref|YP_001191156.1|	-	0.022	14.4	0.2	0.05	13.3	0.2	1.6	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|146303840|ref|YP_001191156.1|	-	0.037	13.6	0.1	0.1	12.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|146303840|ref|YP_001191156.1|	-	0.047	12.8	0.1	0.1	11.7	0.1	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
AAA	PF00004.24	gi|146303840|ref|YP_001191156.1|	-	0.049	13.8	0.1	0.12	12.5	0.0	1.7	2	1	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.14	gi|146303840|ref|YP_001191156.1|	-	0.12	11.5	0.3	3.8	6.6	0.3	2.2	1	1	1	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
YIEGIA	PF14045.1	gi|146303841|ref|YP_001191157.1|	-	0.18	10.3	2.4	7.8	5.0	0.2	2.2	2	0	0	2	2	2	0	YIEGIA	protein
DIM	PF08194.7	gi|146303842|ref|YP_001191158.1|	-	0.27	11.2	1.2	9.5	6.2	0.4	2.9	3	0	0	3	3	3	0	DIM	protein
AIG1	PF04548.11	gi|146303843|ref|YP_001191159.1|	-	0.028	13.5	0.0	0.031	13.3	0.0	1.1	1	0	0	1	1	1	0	AIG1	family
Abhydrolase_3	PF07859.8	gi|146303844|ref|YP_001191160.1|	-	3.2e-73	245.7	0.0	4e-73	245.4	0.0	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.23	gi|146303844|ref|YP_001191160.1|	-	2.3e-11	43.1	1.1	6.1e-11	41.7	0.8	1.5	1	1	0	1	1	1	1	Carboxylesterase	family
Abhydrolase_5	PF12695.2	gi|146303844|ref|YP_001191160.1|	-	7.8e-09	35.4	0.2	1.1e-08	34.9	0.1	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.7	gi|146303844|ref|YP_001191160.1|	-	1.3e-05	23.9	0.0	0.05	12.0	0.0	2.2	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
DUF2424	PF10340.4	gi|146303844|ref|YP_001191160.1|	-	4.8e-05	22.1	0.0	6.8e-05	21.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2424)
Chlorophyllase2	PF12740.2	gi|146303844|ref|YP_001191160.1|	-	0.00048	19.0	0.0	0.00072	18.5	0.0	1.2	1	0	0	1	1	1	1	Chlorophyllase	enzyme
Peptidase_S9	PF00326.16	gi|146303844|ref|YP_001191160.1|	-	0.00096	18.4	0.0	0.002	17.3	0.0	1.4	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Esterase_phd	PF10503.4	gi|146303844|ref|YP_001191160.1|	-	0.036	13.3	0.0	0.27	10.4	0.0	2.1	2	0	0	2	2	2	0	Esterase	PHB	depolymerase
PAF-AH_p_II	PF03403.8	gi|146303844|ref|YP_001191160.1|	-	0.12	10.6	0.0	9	4.4	0.0	2.1	2	0	0	2	2	2	0	Platelet-activating	factor	acetylhydrolase,	isoform	II
Amino_oxidase	PF01593.19	gi|146303845|ref|YP_001191161.1|	-	1.3e-18	67.3	0.0	1e-16	61.0	0.0	2.0	2	0	0	2	2	2	1	Flavin	containing	amine	oxidoreductase
DAO	PF01266.19	gi|146303845|ref|YP_001191161.1|	-	2.2e-15	56.4	0.2	6.8e-08	31.7	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146303845|ref|YP_001191161.1|	-	3.5e-13	49.3	0.0	7e-13	48.3	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|146303845|ref|YP_001191161.1|	-	3.7e-06	27.2	1.0	0.011	16.0	0.4	2.9	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303845|ref|YP_001191161.1|	-	1.9e-05	23.3	0.1	0.11	10.9	0.5	2.1	2	0	0	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|146303845|ref|YP_001191161.1|	-	2.2e-05	23.4	0.5	0.0014	17.5	0.4	2.1	2	0	0	2	2	2	1	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146303845|ref|YP_001191161.1|	-	3.9e-05	23.6	0.1	0.013	15.3	0.1	2.3	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|146303845|ref|YP_001191161.1|	-	0.0023	17.0	0.0	0.67	8.9	0.0	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303845|ref|YP_001191161.1|	-	0.0064	16.5	0.1	1.4	8.9	0.0	2.3	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303845|ref|YP_001191161.1|	-	0.012	14.6	0.5	0.028	13.4	0.2	1.6	2	0	0	2	2	2	0	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|146303845|ref|YP_001191161.1|	-	0.039	12.5	1.6	0.46	9.0	0.3	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
Thi4	PF01946.12	gi|146303845|ref|YP_001191161.1|	-	0.044	12.8	0.5	0.07	12.2	0.4	1.3	1	0	0	1	1	1	0	Thi4	family
FA_hydroxylase	PF04116.8	gi|146303846|ref|YP_001191162.1|	-	5.4e-09	36.4	14.3	7e-09	36.0	9.9	1.2	1	0	0	1	1	1	1	Fatty	acid	hydroxylase	superfamily
SQS_PSY	PF00494.14	gi|146303847|ref|YP_001191163.1|	-	8.4e-49	166.2	0.1	9.6e-49	166.0	0.0	1.0	1	0	0	1	1	1	1	Squalene/phytoene	synthase
FR47	PF08445.5	gi|146303850|ref|YP_001191166.1|	-	2e-13	49.8	0.0	3.3e-13	49.1	0.0	1.4	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_1	PF00583.19	gi|146303850|ref|YP_001191166.1|	-	1.3e-10	41.1	0.0	2.2e-10	40.3	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_7	PF13508.1	gi|146303850|ref|YP_001191166.1|	-	2.1e-07	31.0	0.0	4e-07	30.0	0.0	1.5	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|146303850|ref|YP_001191166.1|	-	4.2e-05	23.6	0.0	7.4e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_9	PF13527.1	gi|146303850|ref|YP_001191166.1|	-	0.003	17.4	0.0	0.008	16.0	0.0	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_CG	PF14542.1	gi|146303850|ref|YP_001191166.1|	-	0.0031	17.3	0.0	0.0055	16.5	0.0	1.5	1	1	0	1	1	1	1	GCN5-related	N-acetyl-transferase
Acetyltransf_3	PF13302.1	gi|146303850|ref|YP_001191166.1|	-	0.014	15.5	0.0	0.024	14.8	0.0	1.5	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|146303850|ref|YP_001191166.1|	-	0.028	14.2	0.0	0.048	13.5	0.0	1.3	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
AhpC-TSA	PF00578.16	gi|146303851|ref|YP_001191167.1|	-	1.5e-34	118.3	0.0	2.4e-34	117.6	0.0	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146303851|ref|YP_001191167.1|	-	5.1e-17	61.7	0.0	7.8e-17	61.1	0.0	1.3	1	1	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.4	gi|146303851|ref|YP_001191167.1|	-	2.1e-11	43.2	0.0	5.3e-11	41.9	0.0	1.7	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
GATase_6	PF13522.1	gi|146303852|ref|YP_001191168.1|	-	6.6e-07	29.3	0.0	9.1e-07	28.8	0.0	1.3	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|146303852|ref|YP_001191168.1|	-	3.2e-05	22.7	0.0	4e-05	22.4	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
Na_H_Exchanger	PF00999.16	gi|146303853|ref|YP_001191169.1|	-	2.4e-45	154.6	53.3	3e-45	154.3	36.9	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DDE_Tnp_1_assoc	PF13808.1	gi|146303853|ref|YP_001191169.1|	-	0.089	12.4	1.2	6	6.6	0.1	2.6	2	0	0	2	2	2	0	DDE_Tnp_1-associated
DrsE	PF02635.10	gi|146303854|ref|YP_001191170.1|	-	4e-17	62.4	0.6	4.8e-17	62.1	0.4	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.1	gi|146303854|ref|YP_001191170.1|	-	0.00028	20.6	0.7	0.00043	20.0	0.5	1.3	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
HSP20	PF00011.16	gi|146303855|ref|YP_001191171.1|	-	0.00029	20.6	3.8	0.0059	16.4	0.4	2.9	2	2	1	3	3	3	2	Hsp20/alpha	crystallin	family
CS	PF04969.11	gi|146303855|ref|YP_001191171.1|	-	0.081	13.4	0.6	0.16	12.5	0.4	1.6	1	0	0	1	1	1	0	CS	domain
D123	PF07065.9	gi|146303856|ref|YP_001191172.1|	-	0.089	11.8	1.2	0.16	11.0	0.8	1.3	1	0	0	1	1	1	0	D123
FAD_binding_3	PF01494.14	gi|146303857|ref|YP_001191173.1|	-	0.0045	16.1	0.0	0.0094	15.0	0.0	1.5	2	0	0	2	2	2	1	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|146303857|ref|YP_001191173.1|	-	0.0089	16.0	0.0	0.018	15.0	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|146303857|ref|YP_001191173.1|	-	0.016	13.7	0.1	0.023	13.2	0.1	1.2	1	0	0	1	1	1	0	HI0933-like	protein
Pyr_redox_2	PF07992.9	gi|146303857|ref|YP_001191173.1|	-	0.06	13.2	0.1	0.095	12.5	0.1	1.5	1	1	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|146303857|ref|YP_001191173.1|	-	0.075	11.9	0.1	2	7.2	0.1	2.6	3	0	0	3	3	3	0	Lycopene	cyclase	protein
CbiZ	PF01955.13	gi|146303858|ref|YP_001191174.1|	-	3.9e-34	118.1	0.0	4.5e-34	117.9	0.0	1.0	1	0	0	1	1	1	1	Adenosylcobinamide	amidohydrolase
MgrB	PF13998.1	gi|146303858|ref|YP_001191174.1|	-	0.17	11.6	0.9	1.7	8.4	0.2	2.5	2	0	0	2	2	2	0	MgrB	protein
DUF929	PF06053.6	gi|146303859|ref|YP_001191175.1|	-	6.8e-76	254.6	6.9	7.8e-76	254.4	4.8	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
HAD_2	PF13419.1	gi|146303860|ref|YP_001191176.1|	-	1.6e-22	80.5	0.0	2.2e-22	80.1	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146303860|ref|YP_001191176.1|	-	0.024	14.3	0.0	0.046	13.4	0.0	1.4	1	0	0	1	1	1	0	HAD-hyrolase-like
UPF0175	PF03683.8	gi|146303862|ref|YP_001191178.1|	-	0.077	12.4	1.4	0.27	10.7	1.0	2.1	1	1	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
Pyr_redox_2	PF07992.9	gi|146303863|ref|YP_001191179.1|	-	1.7e-24	86.8	2.5	9.1e-23	81.1	1.7	3.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146303863|ref|YP_001191179.1|	-	1.5e-23	82.9	0.0	3.2e-23	81.8	0.0	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|146303863|ref|YP_001191179.1|	-	1.4e-12	47.8	6.2	4.3e-12	46.2	0.8	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303863|ref|YP_001191179.1|	-	1.1e-09	38.6	0.2	5.5e-08	33.1	0.0	2.5	1	1	1	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146303863|ref|YP_001191179.1|	-	8.5e-09	34.7	10.3	0.00068	18.6	0.3	4.0	3	1	1	4	4	4	3	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|146303863|ref|YP_001191179.1|	-	1.5e-07	30.6	9.7	0.0047	15.8	0.0	4.6	3	1	2	5	5	5	2	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|146303863|ref|YP_001191179.1|	-	9.9e-07	28.7	2.7	4.2e-05	23.4	0.1	2.6	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
FAD_oxidored	PF12831.2	gi|146303863|ref|YP_001191179.1|	-	5.2e-05	22.5	0.1	0.00023	20.3	0.0	2.0	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_7	PF13241.1	gi|146303863|ref|YP_001191179.1|	-	0.00012	22.2	0.1	0.15	12.2	0.1	2.5	2	0	0	2	2	2	2	Putative	NAD(P)-binding
FAD_binding_2	PF00890.19	gi|146303863|ref|YP_001191179.1|	-	0.00014	20.8	0.2	0.00031	19.7	0.2	1.6	1	0	0	1	1	1	1	FAD	binding	domain
K_oxygenase	PF13434.1	gi|146303863|ref|YP_001191179.1|	-	0.00029	19.8	0.0	0.00041	19.3	0.0	1.2	1	0	0	1	1	1	1	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_3	PF01494.14	gi|146303863|ref|YP_001191179.1|	-	0.00091	18.3	0.9	0.038	13.0	0.1	2.4	2	0	0	2	2	2	1	FAD	binding	domain
Thi4	PF01946.12	gi|146303863|ref|YP_001191179.1|	-	0.0019	17.3	3.8	0.0038	16.3	0.1	2.7	3	1	0	3	3	3	1	Thi4	family
UDPG_MGDP_dh_N	PF03721.9	gi|146303863|ref|YP_001191179.1|	-	0.0032	16.8	0.1	0.0032	16.8	0.1	2.4	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|146303863|ref|YP_001191179.1|	-	0.0046	16.6	2.5	0.013	15.1	0.1	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|146303863|ref|YP_001191179.1|	-	0.0069	15.5	0.6	0.29	10.2	0.0	2.4	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
HI0933_like	PF03486.9	gi|146303863|ref|YP_001191179.1|	-	0.011	14.2	6.5	0.028	12.8	0.2	3.3	3	1	1	4	4	4	0	HI0933-like	protein
NAD_Gly3P_dh_N	PF01210.18	gi|146303863|ref|YP_001191179.1|	-	0.015	15.0	0.5	0.17	11.6	0.0	2.3	2	0	0	2	2	2	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
AlaDh_PNT_C	PF01262.16	gi|146303863|ref|YP_001191179.1|	-	0.019	14.5	0.0	0.057	12.9	0.0	1.8	2	0	0	2	2	1	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.1	gi|146303863|ref|YP_001191179.1|	-	0.021	14.6	1.7	3.2	7.4	0.0	3.1	2	1	1	3	3	3	0	FAD-NAD(P)-binding
Lycopene_cycl	PF05834.7	gi|146303863|ref|YP_001191179.1|	-	0.2	10.5	2.8	0.24	10.2	0.1	2.3	2	1	1	3	3	3	0	Lycopene	cyclase	protein
Pirin	PF02678.11	gi|146303864|ref|YP_001191180.1|	-	2e-38	130.5	0.0	4.9e-36	122.8	0.0	2.2	2	0	0	2	2	2	2	Pirin
Pirin_C	PF05726.8	gi|146303864|ref|YP_001191180.1|	-	2.2e-31	107.9	0.0	2.7e-30	104.5	0.0	2.1	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.6	gi|146303864|ref|YP_001191180.1|	-	0.0027	17.1	1.2	0.12	11.9	0.1	2.8	3	1	0	3	3	3	1	Cupin	domain
Cupin_3	PF05899.7	gi|146303864|ref|YP_001191180.1|	-	0.04	13.3	0.1	2	7.8	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF861)
KOW	PF00467.24	gi|146303864|ref|YP_001191180.1|	-	0.11	12.2	4.9	2.6	7.8	0.6	3.0	3	0	0	3	3	3	0	KOW	motif
NTP_transf_2	PF01909.18	gi|146303865|ref|YP_001191181.1|	-	4.3e-06	26.9	0.8	6.2e-06	26.4	0.5	1.3	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
Sugar_tr	PF00083.19	gi|146303866|ref|YP_001191182.1|	-	5.5e-48	163.6	23.6	6.8e-47	160.0	16.4	1.9	1	1	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303866|ref|YP_001191182.1|	-	1.8e-36	125.5	41.0	7.4e-30	103.8	21.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|146303866|ref|YP_001191182.1|	-	2e-06	26.4	17.6	0.0033	15.8	4.4	3.1	2	1	1	3	3	3	3	MFS/sugar	transport	protein
DUF1228	PF06779.9	gi|146303866|ref|YP_001191182.1|	-	0.019	15.0	0.2	0.019	15.0	0.1	3.9	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1228)
MFS_3	PF05977.8	gi|146303866|ref|YP_001191182.1|	-	0.59	8.1	15.3	0.063	11.3	0.5	2.3	2	0	0	2	2	2	0	Transmembrane	secretion	effector
OATP	PF03137.15	gi|146303866|ref|YP_001191182.1|	-	0.94	7.4	4.7	5	5.0	1.8	2.8	1	1	2	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF2244	PF10003.4	gi|146303866|ref|YP_001191182.1|	-	3.5	6.9	7.9	28	4.0	0.1	3.0	2	0	0	2	2	2	0	Integral	membrane	protein	(DUF2244)
MFS_1	PF07690.11	gi|146303867|ref|YP_001191183.1|	-	4.7e-51	173.5	56.2	1.4e-40	139.0	24.7	2.4	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146303867|ref|YP_001191183.1|	-	2.5e-10	39.5	6.6	2.5e-10	39.5	4.6	2.6	2	1	0	2	2	2	1	Sugar	(and	other)	transporter
MFS_2	PF13347.1	gi|146303867|ref|YP_001191183.1|	-	2.5e-05	22.9	31.3	0.00024	19.6	2.9	3.2	1	1	1	2	2	2	2	MFS/sugar	transport	protein
OATP	PF03137.15	gi|146303867|ref|YP_001191183.1|	-	0.0024	16.0	11.7	0.0085	14.1	0.7	3.4	2	1	1	3	3	3	3	Organic	Anion	Transporter	Polypeptide	(OATP)	family
SIR2	PF02146.12	gi|146303868|ref|YP_001191184.1|	-	1.6e-48	164.7	0.0	1.9e-48	164.5	0.0	1.1	1	0	0	1	1	1	1	Sir2	family
XPG_I	PF00867.13	gi|146303868|ref|YP_001191184.1|	-	0.023	14.7	0.0	0.042	13.9	0.0	1.4	1	0	0	1	1	1	0	XPG	I-region
Zn-ribbon_8	PF09723.5	gi|146303868|ref|YP_001191184.1|	-	0.051	13.5	0.6	0.099	12.6	0.4	1.5	1	0	0	1	1	1	0	Zinc	ribbon	domain
SIS	PF01380.17	gi|146303868|ref|YP_001191184.1|	-	0.12	11.9	0.3	0.33	10.5	0.0	1.8	2	0	0	2	2	2	0	SIS	domain
TauE	PF01925.14	gi|146303869|ref|YP_001191185.1|	-	3.2e-36	125.0	37.8	3.9e-36	124.7	26.2	1.0	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
DUF939	PF06081.6	gi|146303869|ref|YP_001191185.1|	-	0.0022	17.8	7.8	0.0022	17.8	5.4	2.2	1	1	0	1	1	1	1	Bacterial	protein	of	unknown	function	(DUF939)
DUF2892	PF11127.3	gi|146303869|ref|YP_001191185.1|	-	0.07	12.9	0.4	0.07	12.9	0.3	4.7	3	1	1	4	4	4	0	Protein	of	unknown	function	(DUF2892)
AAA_10	PF12846.2	gi|146303870|ref|YP_001191186.1|	-	9.3e-18	64.6	0.6	4.3e-17	62.5	0.4	1.9	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|146303870|ref|YP_001191186.1|	-	8.6e-11	42.0	0.3	2.6e-10	40.4	0.1	1.9	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|146303870|ref|YP_001191186.1|	-	1.1e-09	37.2	0.2	0.00023	19.6	0.0	2.2	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|146303870|ref|YP_001191186.1|	-	8.1e-09	35.2	0.0	0.0012	18.3	0.0	2.2	2	0	0	2	2	2	2	FtsK/SpoIIIE	family
AAA	PF00004.24	gi|146303870|ref|YP_001191186.1|	-	0.0001	22.5	1.3	0.13	12.4	0.0	2.6	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
TrwB_AAD_bind	PF10412.4	gi|146303870|ref|YP_001191186.1|	-	0.00013	20.6	0.0	0.00021	20.0	0.0	1.3	1	0	0	1	1	1	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DEAD	PF00270.24	gi|146303870|ref|YP_001191186.1|	-	0.00073	19.0	0.0	0.4	10.1	0.0	2.3	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|146303870|ref|YP_001191186.1|	-	0.0014	18.7	0.1	0.5	10.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
NACHT	PF05729.7	gi|146303870|ref|YP_001191186.1|	-	0.0021	17.7	0.2	2.2	7.9	0.1	2.3	2	0	0	2	2	2	2	NACHT	domain
Zot	PF05707.7	gi|146303870|ref|YP_001191186.1|	-	0.0047	16.4	0.0	0.021	14.2	0.0	2.1	3	0	0	3	3	3	1	Zonular	occludens	toxin	(Zot)
DUF3584	PF12128.3	gi|146303870|ref|YP_001191186.1|	-	0.016	12.5	0.3	0.023	12.0	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
Zeta_toxin	PF06414.7	gi|146303870|ref|YP_001191186.1|	-	0.018	14.1	0.0	0.034	13.2	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
ABC_tran	PF00005.22	gi|146303870|ref|YP_001191186.1|	-	0.028	14.7	0.0	0.067	13.4	0.0	1.7	1	0	0	1	1	1	0	ABC	transporter
ResIII	PF04851.10	gi|146303870|ref|YP_001191186.1|	-	0.034	13.9	0.0	1.7	8.4	0.0	2.2	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.1	gi|146303870|ref|YP_001191186.1|	-	0.04	13.3	0.1	2.4	7.5	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.1	gi|146303870|ref|YP_001191186.1|	-	0.04	13.9	0.2	1.1	9.1	0.0	2.2	2	0	0	2	2	2	0	AAA	ATPase	domain
Miro	PF08477.8	gi|146303870|ref|YP_001191186.1|	-	0.075	13.5	0.0	0.14	12.6	0.0	1.5	1	0	0	1	1	1	0	Miro-like	protein
AAA_18	PF13238.1	gi|146303870|ref|YP_001191186.1|	-	0.12	12.7	0.1	0.31	11.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
NurA	PF09376.5	gi|146303871|ref|YP_001191187.1|	-	1.2e-13	51.1	0.5	1.8e-13	50.5	0.3	1.2	1	0	0	1	1	1	1	NurA	domain
Phage_tube	PF04985.9	gi|146303872|ref|YP_001191188.1|	-	0.032	13.6	0.0	0.046	13.1	0.0	1.3	1	0	0	1	1	1	0	Phage	tail	tube	protein	FII
PMBR	PF09373.5	gi|146303872|ref|YP_001191188.1|	-	0.11	12.5	1.1	0.95	9.5	0.1	2.5	3	0	0	3	3	3	0	Pseudomurein-binding	repeat
Macro	PF01661.16	gi|146303873|ref|YP_001191189.1|	-	1.4e-37	128.1	0.0	2e-37	127.7	0.0	1.2	1	0	0	1	1	1	1	Macro	domain
AAA_21	PF13304.1	gi|146303874|ref|YP_001191190.1|	-	6.3e-18	65.7	4.7	1.1e-16	61.6	3.3	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|146303874|ref|YP_001191190.1|	-	4.2e-12	45.8	2.2	1.4e-05	24.3	0.1	2.3	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146303874|ref|YP_001191190.1|	-	3.5e-09	37.2	0.3	8.5e-09	36.0	0.2	1.5	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|146303874|ref|YP_001191190.1|	-	9.5e-06	25.0	0.0	2.2e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
SMC_N	PF02463.14	gi|146303874|ref|YP_001191190.1|	-	8.8e-05	21.8	0.0	0.034	13.3	0.0	2.5	3	0	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.3	gi|146303874|ref|YP_001191190.1|	-	0.0018	17.4	0.1	0.0056	15.8	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2813)
ABC_tran	PF00005.22	gi|146303874|ref|YP_001191190.1|	-	0.021	15.0	0.0	0.046	14.0	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
AAA_13	PF13166.1	gi|146303874|ref|YP_001191190.1|	-	0.061	11.7	0.3	3.9	5.8	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
Laminin_II	PF06009.7	gi|146303876|ref|YP_001191192.1|	-	0.00079	19.1	2.4	0.099	12.3	0.0	3.0	1	1	2	3	3	3	1	Laminin	Domain	II
BLOC1_2	PF10046.4	gi|146303876|ref|YP_001191192.1|	-	0.002	18.2	2.3	0.11	12.7	0.4	3.1	2	1	1	3	3	3	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
DUF972	PF06156.8	gi|146303876|ref|YP_001191192.1|	-	0.013	15.8	5.0	0.12	12.6	0.5	3.1	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF972)
CPSase_L_D3	PF02787.14	gi|146303876|ref|YP_001191192.1|	-	0.02	14.6	0.1	1.9	8.2	0.0	2.3	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
Tropomyosin_1	PF12718.2	gi|146303876|ref|YP_001191192.1|	-	0.021	14.6	3.7	0.22	11.3	0.5	2.2	2	0	0	2	2	2	0	Tropomyosin	like
DUF948	PF06103.6	gi|146303876|ref|YP_001191192.1|	-	0.022	14.6	2.9	3.5	7.5	0.1	3.5	2	1	2	4	4	4	0	Bacterial	protein	of	unknown	function	(DUF948)
P4Ha_N	PF08336.6	gi|146303876|ref|YP_001191192.1|	-	0.037	13.8	2.2	2.5	7.9	0.2	2.4	2	0	0	2	2	2	0	Prolyl	4-Hydroxylase	alpha-subunit,	N-terminal	region
DUF3038	PF11237.3	gi|146303876|ref|YP_001191192.1|	-	0.038	13.7	0.7	0.081	12.7	0.2	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3038)
Seryl_tRNA_N	PF02403.17	gi|146303876|ref|YP_001191192.1|	-	0.042	13.8	4.5	1.7	8.7	0.7	3.5	3	1	1	4	4	4	0	Seryl-tRNA	synthetase	N-terminal	domain
PrkA	PF06798.7	gi|146303876|ref|YP_001191192.1|	-	0.058	12.6	3.3	0.14	11.4	1.5	2.0	1	1	1	2	2	2	0	PrkA	serine	protein	kinase	C-terminal	domain
FlgN	PF05130.7	gi|146303876|ref|YP_001191192.1|	-	0.058	13.6	2.8	2.2	8.5	0.9	2.8	1	1	1	2	2	2	0	FlgN	protein
AAA_13	PF13166.1	gi|146303876|ref|YP_001191192.1|	-	0.083	11.3	0.1	0.11	10.9	0.1	1.1	1	0	0	1	1	1	0	AAA	domain
DUF3407	PF11887.3	gi|146303876|ref|YP_001191192.1|	-	0.097	11.9	0.1	18	4.4	0.0	2.5	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3407)
DUF4378	PF14309.1	gi|146303876|ref|YP_001191192.1|	-	0.11	12.5	7.1	2	8.4	0.0	2.8	3	1	1	4	4	3	0	Domain	of	unknown	function	(DUF4378)
SipA	PF09052.5	gi|146303876|ref|YP_001191192.1|	-	0.13	10.6	0.2	0.15	10.4	0.2	1.1	1	0	0	1	1	1	0	Salmonella	invasion	protein	A
Spc7	PF08317.6	gi|146303876|ref|YP_001191192.1|	-	0.15	10.7	4.7	1.9	7.0	0.4	2.3	1	1	1	2	2	2	0	Spc7	kinetochore	protein
Apolipoprotein	PF01442.13	gi|146303876|ref|YP_001191192.1|	-	0.16	11.4	7.5	4.9	6.6	5.2	2.6	1	1	0	1	1	1	0	Apolipoprotein	A1/A4/E	domain
V_ATPase_I	PF01496.14	gi|146303876|ref|YP_001191192.1|	-	0.19	9.5	2.0	0.32	8.7	1.2	1.6	1	1	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
DASH_Dad2	PF08654.5	gi|146303876|ref|YP_001191192.1|	-	0.45	10.5	4.3	0.44	10.5	1.0	2.5	2	1	0	2	2	2	0	DASH	complex	subunit	Dad2
Occludin_ELL	PF07303.8	gi|146303876|ref|YP_001191192.1|	-	0.62	10.8	2.5	9.5	7.0	0.1	2.7	3	0	0	3	3	2	0	Occludin	homology	domain
Mto2_bdg	PF12808.2	gi|146303876|ref|YP_001191192.1|	-	0.96	9.6	5.9	0.9	9.6	0.6	2.8	2	1	0	2	2	2	0	Micro-tubular	organiser	Mto1	C-term	Mto2-binding	region
IncA	PF04156.9	gi|146303876|ref|YP_001191192.1|	-	5.9	6.4	7.5	6.3	6.3	1.4	2.5	1	1	0	2	2	2	0	IncA	protein
AAA_14	PF13173.1	gi|146303877|ref|YP_001191193.1|	-	1.3e-08	34.7	0.0	2.3e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Fe_dep_repress	PF01325.14	gi|146303877|ref|YP_001191193.1|	-	0.00021	21.1	0.1	0.00055	19.8	0.1	1.6	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
AAA_22	PF13401.1	gi|146303877|ref|YP_001191193.1|	-	0.00027	21.0	0.1	0.043	13.9	0.0	2.4	1	1	0	1	1	1	1	AAA	domain
Arch_ATPase	PF01637.13	gi|146303877|ref|YP_001191193.1|	-	0.00031	20.5	0.1	0.27	10.9	0.1	2.9	1	1	0	2	2	2	2	Archaeal	ATPase
TrmB	PF01978.14	gi|146303877|ref|YP_001191193.1|	-	0.019	14.6	1.5	0.034	13.8	0.1	2.1	3	0	0	3	3	3	0	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146303877|ref|YP_001191193.1|	-	0.11	12.1	1.0	0.27	10.9	0.0	2.2	3	0	0	3	3	3	0	MarR	family
AAA_25	PF13481.1	gi|146303877|ref|YP_001191193.1|	-	0.13	11.6	0.1	2	7.7	0.0	2.5	2	1	1	3	3	3	0	AAA	domain
Penicillinase_R	PF03965.11	gi|146303877|ref|YP_001191193.1|	-	0.14	12.2	0.0	0.35	10.9	0.0	1.6	1	0	0	1	1	1	0	Penicillinase	repressor
Oxidored_molyb	PF00174.14	gi|146303879|ref|YP_001191195.1|	-	5.5e-40	136.5	0.0	6.5e-40	136.2	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
TPP_enzyme_N	PF02776.13	gi|146303880|ref|YP_001191196.1|	-	3.2e-35	121.1	0.0	4.8e-35	120.5	0.0	1.3	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|146303880|ref|YP_001191196.1|	-	1.9e-15	56.7	0.0	3.8e-15	55.7	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|146303880|ref|YP_001191196.1|	-	1.8e-10	40.7	0.0	4.8e-10	39.3	0.0	1.8	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
OrfB_Zn_ribbon	PF07282.6	gi|146303881|ref|YP_001191197.1|	-	1.7e-17	62.7	0.0	3.1e-17	61.9	0.0	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Resolvase	PF00239.16	gi|146303882|ref|YP_001191198.1|	-	3.6e-19	69.0	0.1	5.2e-19	68.5	0.1	1.2	1	0	0	1	1	1	1	Resolvase,	N	terminal	domain
HTH_17	PF12728.2	gi|146303882|ref|YP_001191198.1|	-	9.3e-13	48.2	1.0	1.8e-12	47.3	0.7	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MerR	PF00376.18	gi|146303882|ref|YP_001191198.1|	-	1.5e-05	24.4	0.4	3.6e-05	23.2	0.3	1.7	1	0	0	1	1	1	1	MerR	family	regulatory	protein
MerR_1	PF13411.1	gi|146303882|ref|YP_001191198.1|	-	0.00019	21.1	0.2	0.0004	20.0	0.1	1.7	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
HTH_23	PF13384.1	gi|146303882|ref|YP_001191198.1|	-	0.00064	19.2	0.0	0.0018	17.8	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_28	PF13518.1	gi|146303882|ref|YP_001191198.1|	-	0.0013	18.6	0.5	0.003	17.5	0.1	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|146303882|ref|YP_001191198.1|	-	0.044	13.9	0.1	0.082	13.0	0.1	1.7	1	1	0	1	1	1	0	Winged	helix-turn	helix
Fanconi_A	PF03511.9	gi|146303882|ref|YP_001191198.1|	-	0.088	12.6	0.0	0.21	11.3	0.0	1.6	1	0	0	1	1	1	0	Fanconi	anaemia	group	A	protein
Phage_AlpA	PF05930.7	gi|146303882|ref|YP_001191198.1|	-	0.11	12.1	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	Prophage	CP4-57	regulatory	protein	(AlpA)
Exc	PF07825.6	gi|146303882|ref|YP_001191198.1|	-	0.14	11.8	0.1	0.24	11.1	0.1	1.3	1	0	0	1	1	1	0	Excisionase-like	protein
Sdh_cyt	PF01127.17	gi|146303883|ref|YP_001191199.1|	-	3.7e-07	29.9	7.4	4.7e-07	29.6	5.1	1.1	1	0	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Sdh_cyt	PF01127.17	gi|146303884|ref|YP_001191200.1|	-	5.2e-11	42.4	8.8	7e-11	42.0	5.8	1.4	1	1	0	1	1	1	1	Succinate	dehydrogenase/Fumarate	reductase	transmembrane	subunit
Ferric_reduct	PF01794.14	gi|146303884|ref|YP_001191200.1|	-	0.0063	16.6	9.5	0.04	14.0	6.6	1.9	1	1	0	1	1	1	1	Ferric	reductase	like	transmembrane	component
Cytochrom_B_N	PF00033.14	gi|146303884|ref|YP_001191200.1|	-	0.0069	15.7	8.7	0.09	12.1	0.3	2.1	2	0	0	2	2	2	2	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|146303884|ref|YP_001191200.1|	-	0.029	13.7	11.3	0.4	10.0	1.3	2.1	1	1	1	2	2	2	0	Prokaryotic	cytochrome	b561
DUF2231	PF09990.4	gi|146303884|ref|YP_001191200.1|	-	0.28	11.5	10.1	3.6	7.9	3.0	2.2	2	0	0	2	2	2	0	Predicted	membrane	protein	(DUF2231)
DUF3413	PF11893.3	gi|146303884|ref|YP_001191200.1|	-	0.36	9.6	3.7	0.067	12.0	0.3	1.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3413)
CopD	PF05425.8	gi|146303884|ref|YP_001191200.1|	-	6.3	7.0	8.5	20	5.4	5.8	1.8	1	1	0	1	1	1	0	Copper	resistance	protein	D
FAD_binding_2	PF00890.19	gi|146303885|ref|YP_001191201.1|	-	2.8e-93	313.0	0.5	4e-93	312.5	0.2	1.3	2	0	0	2	2	2	1	FAD	binding	domain
Succ_DH_flav_C	PF02910.15	gi|146303885|ref|YP_001191201.1|	-	7.4e-41	139.0	0.0	1.2e-40	138.3	0.0	1.4	1	0	0	1	1	1	1	Fumarate	reductase	flavoprotein	C-term
Pyr_redox_2	PF07992.9	gi|146303885|ref|YP_001191201.1|	-	0.0015	18.4	0.1	0.81	9.5	0.1	3.2	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Fumerase_C	PF05683.7	gi|146303886|ref|YP_001191202.1|	-	9.3e-41	139.2	0.0	1e-40	139.0	0.0	1.0	1	0	0	1	1	1	1	Fumarase	C-terminus
Fumerase	PF05681.9	gi|146303887|ref|YP_001191203.1|	-	3.5e-90	301.7	0.0	4.4e-90	301.4	0.0	1.0	1	0	0	1	1	1	1	Fumarate	hydratase	(Fumerase)
Sugar_tr	PF00083.19	gi|146303888|ref|YP_001191204.1|	-	2.2e-36	125.4	28.9	2.6e-36	125.2	20.0	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303888|ref|YP_001191204.1|	-	4e-26	91.5	37.5	4e-26	91.5	26.0	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
FAD_binding_4	PF01565.18	gi|146303889|ref|YP_001191205.1|	-	1e-42	144.8	0.3	5e-42	142.6	0.0	2.2	3	0	0	3	3	3	1	FAD	binding	domain
FAD-oxidase_C	PF02913.14	gi|146303889|ref|YP_001191205.1|	-	5.2e-33	114.4	0.0	8.1e-33	113.7	0.0	1.3	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
Aldedh	PF00171.17	gi|146303890|ref|YP_001191206.1|	-	1.2e-143	478.7	0.0	1.5e-143	478.4	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
AA_permease_2	PF13520.1	gi|146303891|ref|YP_001191207.1|	-	2.9e-39	134.8	57.1	3.6e-39	134.4	39.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146303891|ref|YP_001191207.1|	-	1e-23	83.4	53.0	3.7e-23	81.6	36.7	1.6	1	1	0	1	1	1	1	Amino	acid	permease
Ldh_2	PF02615.9	gi|146303892|ref|YP_001191208.1|	-	2.4e-69	233.6	0.0	4.2e-69	232.8	0.0	1.4	1	1	0	1	1	1	1	Malate/L-lactate	dehydrogenase
SAF	PF08666.7	gi|146303893|ref|YP_001191209.1|	-	1.4e-13	51.0	0.1	1.8e-13	50.6	0.1	1.2	1	0	0	1	1	1	1	SAF	domain
SET	PF00856.23	gi|146303893|ref|YP_001191209.1|	-	0.02	15.1	0.0	1.4	9.1	0.0	2.6	2	1	1	3	3	3	0	SET	domain
DUF2190	PF09956.4	gi|146303893|ref|YP_001191209.1|	-	0.05	13.3	0.0	2.8	7.7	0.0	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2190)
GD_AH_C	PF04295.8	gi|146303894|ref|YP_001191210.1|	-	1.1e-128	429.3	0.4	1.2e-128	429.1	0.2	1.0	1	0	0	1	1	1	1	D-galactarate	dehydratase	/	Altronate	hydrolase,	C	terminus
Coiled	PF05710.7	gi|146303894|ref|YP_001191210.1|	-	0.019	15.4	0.2	0.05	14.0	0.1	1.7	1	0	0	1	1	1	0	Coiled	coil
MR_MLE_C	PF13378.1	gi|146303895|ref|YP_001191211.1|	-	2.3e-20	72.6	0.0	4.9e-20	71.5	0.0	1.5	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE	PF01188.16	gi|146303895|ref|YP_001191211.1|	-	2.7e-14	53.4	0.1	5e-14	52.5	0.0	1.5	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
MR_MLE_N	PF02746.11	gi|146303895|ref|YP_001191211.1|	-	4.6e-09	36.2	0.0	7.7e-09	35.5	0.0	1.3	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
FCD	PF07729.7	gi|146303896|ref|YP_001191212.1|	-	8e-25	87.5	2.6	1.2e-24	87.0	1.4	1.6	2	0	0	2	2	2	1	FCD	domain
GntR	PF00392.16	gi|146303896|ref|YP_001191212.1|	-	1.6e-15	56.2	0.1	3.6e-15	55.1	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.1	gi|146303896|ref|YP_001191212.1|	-	4.6e-05	22.7	0.2	0.00016	20.9	0.1	2.1	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|146303896|ref|YP_001191212.1|	-	0.0032	17.1	0.1	0.0081	15.8	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
EAP30	PF04157.11	gi|146303896|ref|YP_001191212.1|	-	0.0037	16.4	0.4	0.073	12.2	0.0	2.2	2	0	0	2	2	2	1	EAP30/Vps36	family
HTH_11	PF08279.7	gi|146303896|ref|YP_001191212.1|	-	0.0076	15.8	0.6	0.029	13.9	0.0	2.3	3	0	0	3	3	3	1	HTH	domain
DUF2458	PF10454.4	gi|146303896|ref|YP_001191212.1|	-	0.0096	15.8	1.1	0.021	14.6	0.3	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2458)
HTH_Crp_2	PF13545.1	gi|146303896|ref|YP_001191212.1|	-	0.013	15.2	0.0	0.054	13.2	0.0	2.1	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_41	PF14502.1	gi|146303896|ref|YP_001191212.1|	-	0.017	14.7	0.0	0.032	13.8	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
FadR_C	PF07840.7	gi|146303896|ref|YP_001191212.1|	-	0.024	14.2	0.3	0.16	11.5	0.2	1.9	1	1	0	1	1	1	0	FadR	C-terminal	domain
HTH_5	PF01022.15	gi|146303896|ref|YP_001191212.1|	-	0.029	14.0	0.0	0.06	13.0	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
FUR	PF01475.14	gi|146303896|ref|YP_001191212.1|	-	0.044	13.6	1.0	5.2	7.0	0.0	2.8	3	0	0	3	3	3	0	Ferric	uptake	regulator	family
HTH_36	PF13730.1	gi|146303896|ref|YP_001191212.1|	-	0.048	13.7	0.0	0.096	12.8	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
AAA_11	PF13086.1	gi|146303896|ref|YP_001191212.1|	-	0.059	12.9	0.4	0.082	12.4	0.3	1.1	1	0	0	1	1	1	0	AAA	domain
RepL	PF05732.6	gi|146303896|ref|YP_001191212.1|	-	0.071	12.3	0.0	0.15	11.2	0.0	1.5	1	0	0	1	1	1	0	Firmicute	plasmid	replication	protein	(RepL)
TFIIE_alpha	PF02002.12	gi|146303896|ref|YP_001191212.1|	-	0.11	12.0	3.2	0.095	12.2	0.4	2.4	2	1	0	2	2	2	0	TFIIE	alpha	subunit
TnpV	PF14198.1	gi|146303896|ref|YP_001191212.1|	-	0.19	11.6	2.4	0.96	9.3	0.1	2.7	2	1	1	3	3	3	0	Transposon-encoded	protein	TnpV
Hydantoinase_A	PF01968.13	gi|146303897|ref|YP_001191213.1|	-	2e-83	279.8	0.9	4.4e-81	272.1	0.1	2.4	2	0	0	2	2	2	2	Hydantoinase/oxoprolinase
Hydant_A_N	PF05378.8	gi|146303897|ref|YP_001191213.1|	-	2.1e-50	170.6	0.2	3.8e-50	169.8	0.2	1.5	1	0	0	1	1	1	1	Hydantoinase/oxoprolinase	N-terminal	region
Myb_DNA-bind_2	PF08914.6	gi|146303897|ref|YP_001191213.1|	-	0.12	12.1	0.0	0.25	11.1	0.0	1.5	1	0	0	1	1	1	0	Rap1	Myb	domain
EutA	PF06277.6	gi|146303897|ref|YP_001191213.1|	-	1.6	7.2	4.4	0.46	9.0	0.3	2.0	3	0	0	3	3	3	0	Ethanolamine	utilisation	protein	EutA
Hydantoinase_B	PF02538.9	gi|146303898|ref|YP_001191214.1|	-	7.6e-157	522.7	0.0	9.6e-157	522.3	0.0	1.0	1	0	0	1	1	1	1	Hydantoinase	B/oxoprolinase
TrkA_C	PF02080.16	gi|146303898|ref|YP_001191214.1|	-	0.034	13.7	0.3	1	9.0	0.1	2.6	2	0	0	2	2	2	0	TrkA-C	domain
AAA_21	PF13304.1	gi|146303900|ref|YP_001191216.1|	-	5.5e-08	33.1	0.6	5.5e-07	29.8	0.4	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_23	PF13476.1	gi|146303900|ref|YP_001191216.1|	-	4.6e-05	23.8	0.1	6.7e-05	23.3	0.0	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146303900|ref|YP_001191216.1|	-	0.001	18.3	0.1	0.14	11.3	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|146303900|ref|YP_001191216.1|	-	0.03	13.8	0.0	0.065	12.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
zinc_ribbon_6	PF14599.1	gi|146303901|ref|YP_001191217.1|	-	0.022	14.5	1.7	0.05	13.4	1.2	1.5	1	0	0	1	1	1	0	Zinc-ribbon
AAA_21	PF13304.1	gi|146303902|ref|YP_001191218.1|	-	1.7e-19	70.9	7.7	3.6e-16	59.9	5.3	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|146303902|ref|YP_001191218.1|	-	6.9e-15	54.9	10.6	1.1e-11	44.4	6.5	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146303902|ref|YP_001191218.1|	-	1e-13	52.0	3.8	3.1e-13	50.5	2.6	1.8	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146303902|ref|YP_001191218.1|	-	0.00027	20.2	1.1	0.00042	19.6	0.2	1.8	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.3	gi|146303902|ref|YP_001191218.1|	-	0.00036	19.7	1.3	0.02	13.9	0.0	2.8	3	1	1	4	4	4	1	Protein	of	unknown	function	(DUF2813)
AAA_29	PF13555.1	gi|146303902|ref|YP_001191218.1|	-	0.0027	17.2	0.0	0.0053	16.2	0.0	1.5	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
Arch_ATPase	PF01637.13	gi|146303902|ref|YP_001191218.1|	-	0.0045	16.7	0.9	0.0045	16.7	0.6	1.9	2	0	0	2	2	2	1	Archaeal	ATPase
Miro	PF08477.8	gi|146303902|ref|YP_001191218.1|	-	0.0048	17.3	0.7	0.25	11.8	0.0	2.5	2	0	0	2	2	2	1	Miro-like	protein
Med6	PF04934.9	gi|146303902|ref|YP_001191218.1|	-	0.0086	15.6	0.7	0.014	14.9	0.5	1.3	1	0	0	1	1	1	1	MED6	mediator	sub	complex	component
AAA_13	PF13166.1	gi|146303902|ref|YP_001191218.1|	-	0.02	13.3	3.2	1	7.7	3.1	2.7	2	1	0	2	2	2	0	AAA	domain
DUF1841	PF08897.6	gi|146303902|ref|YP_001191218.1|	-	0.021	14.6	0.2	0.049	13.4	0.1	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1841)
ABC_tran	PF00005.22	gi|146303902|ref|YP_001191218.1|	-	0.022	15.0	0.0	0.055	13.7	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
MMR_HSR1	PF01926.18	gi|146303902|ref|YP_001191218.1|	-	0.044	13.7	1.1	0.16	11.8	0.6	2.4	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
MobB	PF03205.9	gi|146303902|ref|YP_001191218.1|	-	0.064	12.9	1.0	0.12	12.1	0.0	1.9	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_16	PF13191.1	gi|146303903|ref|YP_001191219.1|	-	0.00032	20.7	0.2	0.045	13.7	0.0	3.7	3	0	0	3	3	3	1	AAA	ATPase	domain
Hemagglutinin	PF00509.13	gi|146303903|ref|YP_001191219.1|	-	0.0018	16.4	1.5	0.0029	15.8	1.1	1.2	1	0	0	1	1	1	1	Haemagglutinin
AAA_25	PF13481.1	gi|146303903|ref|YP_001191219.1|	-	0.016	14.6	0.1	0.09	12.1	0.0	2.4	3	0	0	3	3	3	0	AAA	domain
Syntaxin	PF00804.20	gi|146303903|ref|YP_001191219.1|	-	0.017	15.2	2.3	0.042	14.0	0.7	2.4	2	0	0	2	2	2	0	Syntaxin
Baculo_PEP_C	PF04513.7	gi|146303903|ref|YP_001191219.1|	-	0.026	14.3	0.7	0.37	10.6	0.2	2.7	2	0	0	2	2	2	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF258	PF03193.11	gi|146303903|ref|YP_001191219.1|	-	0.049	12.8	0.0	0.13	11.3	0.0	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
DUF948	PF06103.6	gi|146303903|ref|YP_001191219.1|	-	0.088	12.6	6.0	0.63	9.9	1.7	3.5	3	0	0	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
DUF869	PF05911.6	gi|146303903|ref|YP_001191219.1|	-	0.14	10.3	5.8	0.045	11.9	1.4	1.9	2	0	0	2	2	2	0	Plant	protein	of	unknown	function	(DUF869)
SPOB_a	PF14689.1	gi|146303903|ref|YP_001191219.1|	-	0.51	9.9	3.7	0.54	9.8	0.1	3.0	3	0	0	3	3	3	0	Sensor_kinase_SpoOB-type,	alpha-helical	domain
Cortex-I_coil	PF09304.5	gi|146303903|ref|YP_001191219.1|	-	0.54	10.3	8.2	0.17	11.9	0.4	3.6	4	0	0	4	4	4	0	Cortexillin	I,	coiled	coil
GP41	PF00517.12	gi|146303903|ref|YP_001191219.1|	-	0.59	9.6	1.9	0.96	8.9	0.7	1.7	2	0	0	2	2	2	0	Retroviral	envelope	protein
APG6	PF04111.7	gi|146303903|ref|YP_001191219.1|	-	0.62	9.0	6.3	0.081	11.9	1.2	1.8	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF1319	PF07028.6	gi|146303903|ref|YP_001191219.1|	-	1.4	9.1	10.4	0.056	13.6	1.5	2.8	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1319)
Laminin_II	PF06009.7	gi|146303903|ref|YP_001191219.1|	-	2	8.1	7.0	0.29	10.8	0.4	2.7	3	0	0	3	3	3	0	Laminin	Domain	II
DUF1664	PF07889.7	gi|146303903|ref|YP_001191219.1|	-	4.8	7.0	9.7	0.52	10.1	1.5	3.3	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Fzo_mitofusin	PF04799.8	gi|146303903|ref|YP_001191219.1|	-	8.2	5.7	8.9	3.4	7.0	0.7	3.7	4	0	0	4	4	4	0	fzo-like	conserved	region
Transp_cyt_pur	PF02133.10	gi|146303904|ref|YP_001191220.1|	-	7.4e-15	54.4	32.7	2.4e-14	52.7	22.7	1.6	1	1	0	1	1	1	1	Permease	for	cytosine/purines,	uracil,	thiamine,	allantoin
Myc_target_1	PF15179.1	gi|146303904|ref|YP_001191220.1|	-	0.34	10.4	3.5	0.2	11.1	0.2	2.0	2	0	0	2	2	2	0	Myc	target	protein	1
BtpA	PF03437.10	gi|146303905|ref|YP_001191221.1|	-	2.9e-80	269.1	0.0	3.8e-80	268.8	0.0	1.0	1	0	0	1	1	1	1	BtpA	family
Trp_syntA	PF00290.15	gi|146303905|ref|YP_001191221.1|	-	0.0016	16.9	0.7	0.0023	16.5	0.1	1.5	2	0	0	2	2	2	1	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|146303905|ref|YP_001191221.1|	-	0.0018	17.5	0.4	0.0041	16.4	0.0	1.8	2	0	0	2	2	2	1	PcrB	family
FMN_dh	PF01070.13	gi|146303905|ref|YP_001191221.1|	-	0.011	14.6	0.7	0.13	11.1	0.2	2.0	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
His_biosynth	PF00977.16	gi|146303905|ref|YP_001191221.1|	-	0.052	12.7	0.0	0.13	11.5	0.0	1.7	2	0	0	2	2	2	0	Histidine	biosynthesis	protein
DUF2276	PF10040.4	gi|146303906|ref|YP_001191222.1|	-	4.6e-22	78.4	0.1	1.1e-21	77.2	0.0	1.6	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2276)
AAA_14	PF13173.1	gi|146303907|ref|YP_001191223.1|	-	6.4e-30	103.6	0.0	1.4e-29	102.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
DUF4143	PF13635.1	gi|146303907|ref|YP_001191223.1|	-	2.4e-11	43.6	0.4	5.7e-11	42.4	0.2	2.0	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4143)
Mrr_cat	PF04471.7	gi|146303907|ref|YP_001191223.1|	-	0.0009	19.0	0.1	0.002	17.9	0.1	1.5	1	0	0	1	1	1	1	Restriction	endonuclease
AAA_25	PF13481.1	gi|146303907|ref|YP_001191223.1|	-	0.07	12.5	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
DUF2104	PF09877.4	gi|146303908|ref|YP_001191224.1|	-	0.071	13.0	0.0	0.14	12.0	0.0	1.5	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2104)
Pab87_oct	PF13969.1	gi|146303908|ref|YP_001191224.1|	-	0.095	12.7	0.0	0.2	11.7	0.0	1.6	1	0	0	1	1	1	0	Pab87	octamerisation	domain
DUF2089	PF09862.4	gi|146303909|ref|YP_001191225.1|	-	0.067	12.9	0.0	0.16	11.8	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
DEAD	PF00270.24	gi|146303910|ref|YP_001191226.1|	-	4.2e-13	49.1	0.0	1.2e-11	44.4	0.0	2.6	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|146303910|ref|YP_001191226.1|	-	4.3e-05	23.4	0.0	0.00012	21.9	0.0	1.7	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|146303910|ref|YP_001191226.1|	-	5.6e-05	22.9	0.2	0.00028	20.6	0.1	2.3	2	1	0	2	2	2	1	Helicase	conserved	C-terminal	domain
PhoH	PF02562.11	gi|146303910|ref|YP_001191226.1|	-	0.00079	18.7	0.0	0.0015	17.7	0.0	1.4	1	0	0	1	1	1	1	PhoH-like	protein
IstB_IS21	PF01695.12	gi|146303910|ref|YP_001191226.1|	-	0.00088	18.7	0.0	0.0023	17.3	0.0	1.7	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_25	PF13481.1	gi|146303910|ref|YP_001191226.1|	-	0.014	14.8	0.0	0.042	13.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
Cas_Cas5d	PF09704.5	gi|146303911|ref|YP_001191227.1|	-	2.3e-16	60.0	0.3	2.8e-16	59.8	0.2	1.0	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas5)
DevR	PF01905.11	gi|146303912|ref|YP_001191228.1|	-	1.5e-78	263.3	0.0	1.9e-78	263.0	0.0	1.1	1	0	0	1	1	1	1	CRISPR-associated	negative	auto-regulator	DevR/Csa2
Cas_Csa5	PF09702.5	gi|146303913|ref|YP_001191229.1|	-	6.6e-46	154.7	0.2	7.8e-46	154.4	0.1	1.1	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Csa5)
ACPS	PF01648.15	gi|146303913|ref|YP_001191229.1|	-	0.0059	16.4	0.0	0.0088	15.8	0.0	1.2	1	0	0	1	1	1	1	4'-phosphopantetheinyl	transferase	superfamily
Cadherin-like	PF12733.2	gi|146303913|ref|YP_001191229.1|	-	0.087	13.1	0.6	0.15	12.3	0.1	1.6	2	0	0	2	2	2	0	Cadherin-like	beta	sandwich	domain
HTH_24	PF13412.1	gi|146303914|ref|YP_001191230.1|	-	5.2e-08	32.1	0.0	2.7e-07	29.8	0.0	2.3	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_45	PF14947.1	gi|146303914|ref|YP_001191230.1|	-	3.1e-05	23.6	0.2	7.7e-05	22.4	0.0	1.7	2	0	0	2	2	2	1	Winged	helix-turn-helix
HTH_IclR	PF09339.5	gi|146303914|ref|YP_001191230.1|	-	0.0001	21.7	0.1	0.0003	20.3	0.0	1.9	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146303914|ref|YP_001191230.1|	-	0.00022	20.8	0.0	0.00082	18.9	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|146303914|ref|YP_001191230.1|	-	0.00027	21.1	0.1	0.00094	19.4	0.1	1.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HemN_C	PF06969.11	gi|146303914|ref|YP_001191230.1|	-	0.0018	18.3	0.0	0.0042	17.1	0.0	1.7	1	0	0	1	1	1	1	HemN	C-terminal	domain
MarR	PF01047.17	gi|146303914|ref|YP_001191230.1|	-	0.0035	16.9	0.0	0.014	15.0	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.15	gi|146303914|ref|YP_001191230.1|	-	0.016	14.8	0.0	0.045	13.4	0.0	1.8	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|146303914|ref|YP_001191230.1|	-	0.018	14.7	0.0	0.052	13.2	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
GTP_EFTU	PF00009.22	gi|146303914|ref|YP_001191230.1|	-	0.052	12.9	0.0	0.073	12.5	0.0	1.2	1	0	0	1	1	1	0	Elongation	factor	Tu	GTP	binding	domain
HTH_AsnC-type	PF13404.1	gi|146303914|ref|YP_001191230.1|	-	0.057	12.9	0.4	0.33	10.5	0.3	2.3	1	1	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303914|ref|YP_001191230.1|	-	0.069	12.9	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF911	PF06023.7	gi|146303915|ref|YP_001191231.1|	-	1.9e-80	270.1	0.0	4.2e-80	269.0	0.0	1.5	1	1	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF911)
Cas_Cas1	PF01867.11	gi|146303916|ref|YP_001191232.1|	-	8.2e-52	176.0	0.0	2e-51	174.7	0.0	1.6	1	1	0	1	1	1	1	CRISPR	associated	protein	Cas1
Terminase_5	PF06056.7	gi|146303916|ref|YP_001191232.1|	-	0.046	13.2	0.5	0.082	12.4	0.4	1.4	1	0	0	1	1	1	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
CRISPR_Cas2	PF09827.4	gi|146303918|ref|YP_001191234.1|	-	4.2e-20	71.6	0.0	4.7e-20	71.5	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas2
Cas_Cas4	PF01930.12	gi|146303919|ref|YP_001191235.1|	-	2.2e-16	60.2	0.0	2.8e-16	59.8	0.0	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF83
PDDEXK_1	PF12705.2	gi|146303919|ref|YP_001191235.1|	-	6.7e-08	32.2	0.0	1.4e-05	24.6	0.0	2.2	1	1	0	2	2	2	2	PD-(D/E)XK	nuclease	superfamily
HTH_1	PF00126.22	gi|146303920|ref|YP_001191236.1|	-	0.00069	19.3	0.1	0.0012	18.5	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_8	PF02954.14	gi|146303920|ref|YP_001191236.1|	-	0.0092	15.5	0.4	0.021	14.3	0.3	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_20	PF12840.2	gi|146303920|ref|YP_001191236.1|	-	0.012	15.3	0.1	0.024	14.4	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|146303920|ref|YP_001191236.1|	-	0.11	12.2	0.0	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
DUF2276	PF10040.4	gi|146303921|ref|YP_001191237.1|	-	2.6e-22	79.2	0.1	3.7e-22	78.8	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2276)
Cas_NE0113	PF09623.5	gi|146303922|ref|YP_001191238.1|	-	1.5e-06	27.8	0.0	3.6e-05	23.3	0.0	2.1	1	1	0	1	1	1	1	CRISPR-associated	protein	NE0113	(Cas_NE0113)
Cas_Cas02710	PF09670.5	gi|146303922|ref|YP_001191238.1|	-	0.0011	17.7	0.0	0.0014	17.3	0.0	1.2	1	0	0	1	1	1	1	CRISPR-associated	protein	(Cas_Cas02710)
Cas_DxTHG	PF09455.5	gi|146303923|ref|YP_001191239.1|	-	1.9e-55	188.5	0.1	2.2e-55	188.3	0.1	1.0	1	0	0	1	1	1	1	CRISPR-associated	(Cas)	DxTHG	family
LPP20	PF02169.11	gi|146303923|ref|YP_001191239.1|	-	0.074	13.1	0.1	0.18	11.9	0.1	1.7	1	0	0	1	1	1	0	LPP20	lipoprotein
Sulf_transp	PF04143.9	gi|146303925|ref|YP_001191241.1|	-	1.1e-15	57.3	24.3	6.1e-08	32.5	5.1	3.4	2	0	0	2	2	2	2	Sulphur	transport
DUF2207	PF09972.4	gi|146303926|ref|YP_001191242.1|	-	0.0039	15.8	0.0	0.0046	15.6	0.0	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2207)
DUF4231	PF14015.1	gi|146303926|ref|YP_001191242.1|	-	0.025	14.5	0.0	0.026	14.5	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Cyto_ox_2	PF02322.10	gi|146303926|ref|YP_001191242.1|	-	0.029	13.5	0.4	0.032	13.4	0.3	1.0	1	0	0	1	1	1	0	Cytochrome	oxidase	subunit	II
DUF1772	PF08592.6	gi|146303926|ref|YP_001191242.1|	-	0.051	13.3	0.1	0.051	13.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1772)
ABC2_membrane_4	PF12730.2	gi|146303926|ref|YP_001191242.1|	-	0.096	11.8	0.9	0.12	11.5	0.7	1.0	1	0	0	1	1	1	0	ABC-2	family	transporter	protein
Pox_A14	PF05767.7	gi|146303926|ref|YP_001191242.1|	-	0.12	12.3	0.8	10	6.1	0.1	2.0	1	1	1	2	2	2	0	Poxvirus	virion	envelope	protein	A14
DUF2276	PF10040.4	gi|146303927|ref|YP_001191243.1|	-	3.9e-06	27.0	0.0	3.9e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2276)
DUF3943	PF13084.1	gi|146303927|ref|YP_001191243.1|	-	0.012	15.1	0.0	0.017	14.6	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3943)
Cas_Cas6	PF01881.11	gi|146303927|ref|YP_001191243.1|	-	0.06	13.5	0.0	0.073	13.3	0.0	1.2	1	0	0	1	1	1	0	CRISPR	associated	protein	Cas6
Delta_lysin	PF05372.6	gi|146303928|ref|YP_001191244.1|	-	0.22	10.9	2.1	0.25	10.7	0.0	2.1	2	0	0	2	2	2	0	Delta	lysin	family
RAMPs	PF03787.10	gi|146303929|ref|YP_001191245.1|	-	2e-24	86.6	0.0	3.2e-24	85.9	0.0	1.3	1	1	0	1	1	1	1	RAMP	superfamily
TnpB_IS66	PF05717.8	gi|146303929|ref|YP_001191245.1|	-	0.035	13.5	0.0	0.06	12.7	0.0	1.4	1	0	0	1	1	1	0	IS66	Orf2	like	protein
RAMPs	PF03787.10	gi|146303930|ref|YP_001191246.1|	-	4.9e-27	95.1	0.0	7.8e-27	94.5	0.0	1.3	1	0	0	1	1	1	1	RAMP	superfamily
OB_RNB	PF08206.6	gi|146303930|ref|YP_001191246.1|	-	0.07	12.6	0.1	0.14	11.7	0.0	1.5	1	0	0	1	1	1	0	Ribonuclease	B	OB	domain
RAMPs	PF03787.10	gi|146303931|ref|YP_001191247.1|	-	7.5e-11	42.2	0.0	9.3e-11	41.9	0.0	1.3	1	1	0	1	1	1	1	RAMP	superfamily
HD	PF01966.17	gi|146303932|ref|YP_001191248.1|	-	0.015	15.3	0.0	0.047	13.6	0.0	1.9	1	0	0	1	1	1	0	HD	domain
RAMPs	PF03787.10	gi|146303933|ref|YP_001191249.1|	-	5.9e-11	42.6	0.0	1.5e-10	41.2	0.0	1.6	1	1	0	1	1	1	1	RAMP	superfamily
RAMPs	PF03787.10	gi|146303934|ref|YP_001191250.1|	-	0.017	14.9	1.0	0.14	12.0	0.7	2.2	1	1	0	1	1	1	0	RAMP	superfamily
RAMPs	PF03787.10	gi|146303935|ref|YP_001191251.1|	-	6.4e-15	55.5	0.0	1.4e-14	54.4	0.0	1.5	1	1	0	1	1	1	1	RAMP	superfamily
Rcd1	PF04078.8	gi|146303935|ref|YP_001191251.1|	-	0.15	10.9	0.0	0.21	10.3	0.0	1.2	1	0	0	1	1	1	0	Cell	differentiation	family,	Rcd1-like
PIN_4	PF13638.1	gi|146303936|ref|YP_001191252.1|	-	0.037	14.1	0.0	0.25	11.4	0.0	2.1	1	1	1	2	2	2	0	PIN	domain
COP23	PF14218.1	gi|146303936|ref|YP_001191252.1|	-	0.11	12.0	0.0	0.27	10.7	0.0	1.6	1	0	0	1	1	1	0	Circadian	oscillating	protein	COP23
Integrase_DNA	PF02920.10	gi|146303936|ref|YP_001191252.1|	-	0.18	11.2	2.5	4.2	6.8	0.3	2.5	2	0	0	2	2	2	0	DNA	binding	domain	of	tn916	integrase
Cas_Cas1	PF01867.11	gi|146303938|ref|YP_001191254.1|	-	8.9e-19	67.6	0.0	9.7e-19	67.5	0.0	1.0	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas1
Cas_Cas6	PF01881.11	gi|146303939|ref|YP_001191255.1|	-	1.1e-13	51.7	0.0	1.4e-13	51.3	0.0	1.1	1	0	0	1	1	1	1	CRISPR	associated	protein	Cas6
HD	PF01966.17	gi|146303940|ref|YP_001191256.1|	-	3.7e-05	23.7	0.1	5.9e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	HD	domain
DEAD	PF00270.24	gi|146303940|ref|YP_001191256.1|	-	0.00027	20.4	0.0	0.00049	19.6	0.0	1.4	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
Arch_ATPase	PF01637.13	gi|146303941|ref|YP_001191257.1|	-	4e-21	75.8	0.0	9.1e-21	74.6	0.0	1.6	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_16	PF13191.1	gi|146303941|ref|YP_001191257.1|	-	1.2e-07	31.9	0.0	4.5e-07	30.0	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|146303941|ref|YP_001191257.1|	-	3.6e-07	30.1	0.0	0.0036	17.2	0.0	2.3	1	1	1	2	2	2	2	AAA	domain
AAA_35	PF14516.1	gi|146303941|ref|YP_001191257.1|	-	0.0023	16.6	0.0	0.65	8.5	0.0	2.7	3	0	0	3	3	3	2	AAA-like	domain
AAA_22	PF13401.1	gi|146303941|ref|YP_001191257.1|	-	0.0094	16.0	0.0	0.079	13.0	0.0	2.2	1	1	0	1	1	1	1	AAA	domain
DUF4190	PF13828.1	gi|146303942|ref|YP_001191258.1|	-	7	6.2	18.8	0.47	10.0	3.4	3.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4190)
Penicil_amidase	PF01804.13	gi|146303943|ref|YP_001191259.1|	-	4.8e-188	627.6	3.6	5.9e-188	627.3	2.5	1.0	1	0	0	1	1	1	1	Penicillin	amidase
TPP_enzyme_N	PF02776.13	gi|146303944|ref|YP_001191260.1|	-	3.3e-45	153.6	0.0	6.8e-44	149.3	0.0	2.3	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|146303944|ref|YP_001191260.1|	-	1.2e-34	119.0	0.1	4.5e-34	117.2	0.1	1.9	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|146303944|ref|YP_001191260.1|	-	2e-20	72.9	0.0	4.6e-20	71.7	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
CW_binding_2	PF04122.7	gi|146303944|ref|YP_001191260.1|	-	0.14	12.3	0.0	3.5	7.8	0.0	2.6	3	0	0	3	3	3	0	Putative	cell	wall	binding	repeat	2
COXG	PF06240.8	gi|146303945|ref|YP_001191261.1|	-	5.6e-27	94.1	0.0	6.2e-27	93.9	0.0	1.0	1	0	0	1	1	1	1	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
DAO	PF01266.19	gi|146303946|ref|YP_001191262.1|	-	2.5e-49	168.1	0.6	2.9e-49	167.8	0.4	1.0	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|146303946|ref|YP_001191262.1|	-	3.3e-09	36.2	0.2	0.00029	20.0	0.4	2.8	2	1	0	2	2	2	2	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146303946|ref|YP_001191262.1|	-	4.5e-07	29.9	0.2	2.7e-05	24.1	0.2	2.2	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146303946|ref|YP_001191262.1|	-	0.00021	19.9	2.3	0.00043	18.8	0.4	1.9	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_8	PF13450.1	gi|146303946|ref|YP_001191262.1|	-	0.00029	20.8	1.1	0.0012	18.8	0.8	2.1	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_2	PF00890.19	gi|146303946|ref|YP_001191262.1|	-	0.00071	18.5	2.0	0.0011	17.9	1.4	1.4	1	1	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146303946|ref|YP_001191262.1|	-	0.0023	17.0	1.5	0.0073	15.4	0.5	1.8	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146303946|ref|YP_001191262.1|	-	0.013	15.5	0.3	0.05	13.6	0.1	1.9	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|146303946|ref|YP_001191262.1|	-	0.026	13.6	0.3	0.058	12.4	0.2	1.6	1	0	0	1	1	1	0	Thi4	family
Pyr_redox	PF00070.22	gi|146303946|ref|YP_001191262.1|	-	0.028	14.7	4.1	0.075	13.4	0.9	3.0	3	0	0	3	3	3	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|146303946|ref|YP_001191262.1|	-	0.13	11.7	0.2	0.23	10.9	0.2	1.4	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.17	gi|146303946|ref|YP_001191262.1|	-	0.26	10.1	4.8	0.062	12.1	0.7	1.9	3	0	0	3	3	3	0	Glucose	inhibited	division	protein	A
GDPD	PF03009.12	gi|146303947|ref|YP_001191263.1|	-	2.7e-46	158.1	0.0	4.5e-46	157.4	0.0	1.3	1	1	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
GDPD_2	PF13653.1	gi|146303947|ref|YP_001191263.1|	-	0.0011	19.1	0.1	0.0031	17.6	0.1	1.8	1	0	0	1	1	1	1	Glycerophosphoryl	diester	phosphodiesterase	family
BPD_transp_1	PF00528.17	gi|146303948|ref|YP_001191264.1|	-	3.8e-12	46.1	46.1	2.5e-07	30.3	11.8	4.6	2	2	2	4	4	4	2	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.22	gi|146303949|ref|YP_001191265.1|	-	1.3e-35	122.6	0.0	1.9e-35	122.1	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146303949|ref|YP_001191265.1|	-	5.7e-11	42.9	0.2	1.3e-05	25.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
AAA_15	PF13175.1	gi|146303949|ref|YP_001191265.1|	-	1.5e-06	27.5	0.1	0.026	13.6	0.0	2.1	1	1	1	2	2	2	2	AAA	ATPase	domain
TOBE_2	PF08402.5	gi|146303949|ref|YP_001191265.1|	-	5.6e-06	26.2	0.2	1.9e-05	24.5	0.0	2.0	2	0	0	2	2	1	1	TOBE	domain
SMC_N	PF02463.14	gi|146303949|ref|YP_001191265.1|	-	9.8e-06	24.9	0.0	1.8e-05	24.0	0.0	1.4	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE	PF03459.12	gi|146303949|ref|YP_001191265.1|	-	0.00055	19.9	0.0	0.0013	18.8	0.0	1.6	1	0	0	1	1	1	1	TOBE	domain
AAA_16	PF13191.1	gi|146303949|ref|YP_001191265.1|	-	0.002	18.1	0.1	0.004	17.1	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|146303949|ref|YP_001191265.1|	-	0.0021	18.3	0.3	0.0046	17.2	0.2	1.7	1	1	0	1	1	1	1	AAA	domain
DUF258	PF03193.11	gi|146303949|ref|YP_001191265.1|	-	0.0023	17.1	0.0	0.0041	16.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_17	PF13207.1	gi|146303949|ref|YP_001191265.1|	-	0.0025	18.6	0.1	0.0059	17.4	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|146303949|ref|YP_001191265.1|	-	0.0031	17.0	0.2	0.006	16.0	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|146303949|ref|YP_001191265.1|	-	0.0083	16.4	0.4	0.026	14.8	0.1	1.8	2	0	0	2	2	2	1	AAA	domain
AAA_19	PF13245.1	gi|146303949|ref|YP_001191265.1|	-	0.014	15.0	0.0	0.035	13.8	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_22	PF13401.1	gi|146303949|ref|YP_001191265.1|	-	0.016	15.3	0.1	0.042	14.0	0.1	1.9	1	1	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|146303949|ref|YP_001191265.1|	-	0.022	14.7	0.2	0.061	13.2	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
UPF0079	PF02367.12	gi|146303949|ref|YP_001191265.1|	-	0.023	14.3	0.1	0.049	13.2	0.1	1.5	1	0	0	1	1	1	0	Uncharacterised	P-loop	hydrolase	UPF0079
G-alpha	PF00503.15	gi|146303949|ref|YP_001191265.1|	-	0.026	13.2	0.0	0.029	13.0	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
AAA_10	PF12846.2	gi|146303949|ref|YP_001191265.1|	-	0.035	13.5	0.1	0.19	11.1	0.0	2.1	2	1	1	3	3	3	0	AAA-like	domain
AAA_33	PF13671.1	gi|146303949|ref|YP_001191265.1|	-	0.042	13.7	0.0	0.096	12.5	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_30	PF13604.1	gi|146303949|ref|YP_001191265.1|	-	0.053	13.1	0.1	0.14	11.6	0.0	1.7	2	0	0	2	2	1	0	AAA	domain
AAA	PF00004.24	gi|146303949|ref|YP_001191265.1|	-	0.053	13.7	0.3	0.42	10.8	0.2	2.2	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_25	PF13481.1	gi|146303949|ref|YP_001191265.1|	-	0.054	12.9	0.0	0.12	11.7	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
Miro	PF08477.8	gi|146303949|ref|YP_001191265.1|	-	0.054	13.9	0.0	0.12	12.9	0.0	1.6	1	0	0	1	1	1	0	Miro-like	protein
Arch_ATPase	PF01637.13	gi|146303949|ref|YP_001191265.1|	-	0.066	12.9	0.0	0.1	12.2	0.0	1.3	1	0	0	1	1	1	0	Archaeal	ATPase
NACHT	PF05729.7	gi|146303949|ref|YP_001191265.1|	-	0.084	12.5	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
DUF815	PF05673.8	gi|146303949|ref|YP_001191265.1|	-	0.1	11.5	0.1	5.8	5.7	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF815)
FtsK_SpoIIIE	PF01580.13	gi|146303949|ref|YP_001191265.1|	-	0.1	12.0	0.2	0.23	10.9	0.1	1.5	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
cobW	PF02492.14	gi|146303949|ref|YP_001191265.1|	-	0.11	11.9	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
SBP_bac_8	PF13416.1	gi|146303950|ref|YP_001191266.1|	-	9.3e-17	61.6	0.5	1.8e-16	60.7	0.3	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|146303950|ref|YP_001191266.1|	-	2.2e-12	47.3	2.3	3.2e-05	23.8	0.0	2.8	2	1	1	3	3	3	2	Bacterial	extracellular	solute-binding	protein
SBP_bac_11	PF13531.1	gi|146303950|ref|YP_001191266.1|	-	0.00032	20.3	0.1	0.03	13.9	0.0	2.6	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_6	PF13343.1	gi|146303950|ref|YP_001191266.1|	-	0.0041	16.4	0.0	0.0075	15.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
DUF1628	PF07790.6	gi|146303950|ref|YP_001191266.1|	-	0.007	17.0	1.0	0.014	16.1	0.7	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1628)
OppC_N	PF12911.2	gi|146303950|ref|YP_001191266.1|	-	0.23	10.8	1.6	4.7	6.6	0.1	2.9	2	0	0	2	2	2	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
AA_permease	PF00324.16	gi|146303951|ref|YP_001191267.1|	-	2e-25	89.1	46.7	2.5e-25	88.7	32.3	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.1	gi|146303951|ref|YP_001191267.1|	-	2.7e-24	85.5	48.8	3.2e-24	85.2	33.9	1.0	1	0	0	1	1	1	1	Amino	acid	permease
Antitoxin-MazE	PF04014.13	gi|146303952|ref|YP_001191268.1|	-	1.5e-08	34.1	0.8	2.1e-08	33.7	0.5	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PIN	PF01850.16	gi|146303953|ref|YP_001191269.1|	-	8.8e-13	48.6	0.8	1.1e-12	48.3	0.6	1.1	1	0	0	1	1	1	1	PIN	domain
DUF432	PF04254.8	gi|146303954|ref|YP_001191270.1|	-	3e-36	124.0	0.4	3.7e-36	123.7	0.3	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF432)
MS_channel	PF00924.13	gi|146303955|ref|YP_001191271.1|	-	2.1e-45	154.6	5.5	2.7e-45	154.2	3.8	1.1	1	0	0	1	1	1	1	Mechanosensitive	ion	channel
DUF3464	PF11947.3	gi|146303955|ref|YP_001191271.1|	-	0.28	10.6	3.0	0.35	10.3	0.5	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3464)
FtsX	PF02687.16	gi|146303955|ref|YP_001191271.1|	-	0.77	9.5	13.0	0.73	9.6	1.6	2.4	1	1	1	2	2	2	0	FtsX-like	permease	family
FAM70	PF14967.1	gi|146303955|ref|YP_001191271.1|	-	1.6	7.8	8.9	2.7	7.1	6.1	1.3	1	0	0	1	1	1	0	FAM70	protein
PTS_EIIC	PF02378.13	gi|146303955|ref|YP_001191271.1|	-	6	5.5	15.9	5.9	5.6	9.6	1.7	1	1	1	2	2	2	0	Phosphotransferase	system,	EIIC
Zip	PF02535.17	gi|146303958|ref|YP_001191274.1|	-	8.4	5.2	8.0	14	4.5	5.5	1.5	1	1	0	1	1	1	0	ZIP	Zinc	transporter
Tetraspannin	PF00335.15	gi|146303958|ref|YP_001191274.1|	-	8.7	5.5	6.0	20	4.3	4.1	1.6	1	1	0	1	1	1	0	Tetraspanin	family
HTH_IclR	PF09339.5	gi|146303959|ref|YP_001191275.1|	-	1.4e-09	37.4	0.0	2.5e-09	36.5	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146303959|ref|YP_001191275.1|	-	8.5e-06	25.3	0.1	2.2e-05	24.0	0.1	1.7	1	1	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|146303959|ref|YP_001191275.1|	-	3e-05	23.6	0.0	5.1e-05	22.8	0.0	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|146303959|ref|YP_001191275.1|	-	3.9e-05	23.3	0.0	7.7e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|146303959|ref|YP_001191275.1|	-	0.00047	19.4	0.5	0.00087	18.6	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_36	PF13730.1	gi|146303959|ref|YP_001191275.1|	-	0.00083	19.4	0.0	0.0019	18.2	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|146303959|ref|YP_001191275.1|	-	0.0065	16.1	0.0	0.014	15.0	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|146303959|ref|YP_001191275.1|	-	0.016	15.4	0.1	0.062	13.6	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_28	PF13518.1	gi|146303959|ref|YP_001191275.1|	-	0.026	14.5	0.1	0.054	13.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF2681	PF10883.3	gi|146303959|ref|YP_001191275.1|	-	0.032	14.4	0.6	0.059	13.5	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2681)
SID-1_RNA_chan	PF13965.1	gi|146303959|ref|YP_001191275.1|	-	0.041	12.0	0.1	0.057	11.5	0.1	1.2	1	0	0	1	1	1	0	dsRNA-gated	channel	SID-1
HTH_psq	PF05225.11	gi|146303959|ref|YP_001191275.1|	-	0.053	13.0	1.8	5.7	6.5	0.0	2.6	2	0	0	2	2	2	0	helix-turn-helix,	Psq	domain
Zn_peptidase	PF04228.8	gi|146303959|ref|YP_001191275.1|	-	0.097	11.8	0.1	0.18	11.0	0.1	1.4	1	0	0	1	1	1	0	Putative	neutral	zinc	metallopeptidase
Rieske	PF00355.21	gi|146303960|ref|YP_001191276.1|	-	2.6e-15	55.7	0.0	6.7e-15	54.4	0.0	1.7	2	0	0	2	2	2	1	Rieske	[2Fe-2S]	domain
Cytochrom_B_N	PF00033.14	gi|146303960|ref|YP_001191276.1|	-	2.4e-13	49.8	11.0	3.4e-13	49.3	6.5	2.0	1	1	1	2	2	2	2	Cytochrome	b(N-terminal)/b6/petB
Ni_hydr_CYTB	PF01292.15	gi|146303960|ref|YP_001191276.1|	-	3.7e-10	39.4	11.2	1.3e-09	37.7	6.9	2.4	3	1	0	3	3	3	1	Prokaryotic	cytochrome	b561
Rieske_2	PF13806.1	gi|146303960|ref|YP_001191276.1|	-	0.00094	18.8	0.0	0.0019	17.8	0.0	1.6	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
TAT_signal	PF10518.4	gi|146303960|ref|YP_001191276.1|	-	0.58	10.3	3.4	2.1	8.5	2.4	2.0	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
DUF605	PF04652.11	gi|146303961|ref|YP_001191277.1|	-	1.2	8.4	15.3	1.5	8.1	10.6	1.1	1	0	0	1	1	1	0	Vta1	like
DUF2981	PF11200.3	gi|146303961|ref|YP_001191277.1|	-	7.2	5.5	16.0	2.6	7.0	9.4	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2981)
DNA_pol_viral_N	PF00242.12	gi|146303961|ref|YP_001191277.1|	-	7.8	5.4	16.0	12	4.8	11.1	1.2	1	0	0	1	1	1	0	DNA	polymerase	(viral)	N-terminal	domain
DUF1628	PF07790.6	gi|146303962|ref|YP_001191278.1|	-	4.6e-08	33.6	1.7	4.6e-08	33.6	1.2	1.8	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1628)
DUF1573	PF07610.6	gi|146303962|ref|YP_001191278.1|	-	0.045	13.3	2.3	2.1	7.9	0.2	2.9	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1573)
DUF1628	PF07790.6	gi|146303963|ref|YP_001191279.1|	-	0.1	13.3	1.2	0.15	12.8	0.3	1.7	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
Fun_ATP-synt_8	PF05933.8	gi|146303964|ref|YP_001191280.1|	-	0.15	12.0	0.5	0.15	12.0	0.4	2.0	2	0	0	2	2	2	0	Fungal	ATP	synthase	protein	8	(A6L)
T2SE	PF00437.15	gi|146303966|ref|YP_001191282.1|	-	1.3e-35	122.6	0.0	2.2e-35	121.8	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|146303966|ref|YP_001191282.1|	-	6.2e-06	25.6	0.0	1.7e-05	24.2	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|146303966|ref|YP_001191282.1|	-	5.7e-05	23.4	0.0	0.00013	22.2	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
Zeta_toxin	PF06414.7	gi|146303966|ref|YP_001191282.1|	-	7.7e-05	21.8	0.0	0.00016	20.8	0.0	1.4	1	0	0	1	1	1	1	Zeta	toxin
AAA_17	PF13207.1	gi|146303966|ref|YP_001191282.1|	-	0.00024	21.8	0.0	0.00093	20.0	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|146303966|ref|YP_001191282.1|	-	0.00025	20.7	0.1	0.0033	17.1	0.0	2.4	3	0	0	3	3	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF258	PF03193.11	gi|146303966|ref|YP_001191282.1|	-	0.00047	19.3	0.0	0.00076	18.6	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|146303966|ref|YP_001191282.1|	-	0.00048	20.1	0.0	0.00076	19.5	0.0	1.4	1	0	0	1	1	1	1	AAA	ATPase	domain
MMR_HSR1	PF01926.18	gi|146303966|ref|YP_001191282.1|	-	0.00072	19.4	0.1	0.0022	17.9	0.0	1.9	2	0	0	2	2	1	1	50S	ribosome-binding	GTPase
AAA_23	PF13476.1	gi|146303966|ref|YP_001191282.1|	-	0.0013	19.1	0.0	0.0026	18.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146303966|ref|YP_001191282.1|	-	0.0024	17.7	0.0	0.0046	16.8	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146303966|ref|YP_001191282.1|	-	0.0026	17.9	0.0	0.0066	16.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|146303966|ref|YP_001191282.1|	-	0.0028	17.1	0.0	0.0066	15.9	0.0	1.6	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
Miro	PF08477.8	gi|146303966|ref|YP_001191282.1|	-	0.0028	18.1	0.0	0.0054	17.2	0.0	1.5	1	0	0	1	1	1	1	Miro-like	protein
Septin	PF00735.13	gi|146303966|ref|YP_001191282.1|	-	0.0082	15.1	0.0	0.015	14.3	0.0	1.3	1	0	0	1	1	1	1	Septin
Dynamin_N	PF00350.18	gi|146303966|ref|YP_001191282.1|	-	0.0094	15.7	0.0	0.017	14.9	0.0	1.5	1	0	0	1	1	1	1	Dynamin	family
cobW	PF02492.14	gi|146303966|ref|YP_001191282.1|	-	0.015	14.7	0.0	0.027	13.9	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
DUF3368	PF11848.3	gi|146303966|ref|YP_001191282.1|	-	0.017	14.6	0.0	0.44	10.1	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3368)
AAA_21	PF13304.1	gi|146303966|ref|YP_001191282.1|	-	0.025	14.5	0.0	0.065	13.1	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
NB-ARC	PF00931.17	gi|146303966|ref|YP_001191282.1|	-	0.032	13.1	0.1	0.054	12.3	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
Arch_ATPase	PF01637.13	gi|146303966|ref|YP_001191282.1|	-	0.033	13.9	0.0	0.058	13.0	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_18	PF13238.1	gi|146303966|ref|YP_001191282.1|	-	0.034	14.4	0.0	0.091	13.0	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_19	PF13245.1	gi|146303966|ref|YP_001191282.1|	-	0.044	13.5	0.0	0.1	12.3	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA_10	PF12846.2	gi|146303966|ref|YP_001191282.1|	-	0.047	13.1	0.2	0.099	12.0	0.1	1.5	1	0	0	1	1	1	0	AAA-like	domain
NACHT	PF05729.7	gi|146303966|ref|YP_001191282.1|	-	0.079	12.6	0.2	0.16	11.6	0.1	1.5	1	0	0	1	1	1	0	NACHT	domain
ABC_ATPase	PF09818.4	gi|146303966|ref|YP_001191282.1|	-	0.093	11.2	0.1	0.16	10.5	0.1	1.2	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_30	PF13604.1	gi|146303966|ref|YP_001191282.1|	-	0.1	12.1	0.0	0.17	11.4	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
PduV-EutP	PF10662.4	gi|146303966|ref|YP_001191282.1|	-	0.1	12.0	0.1	0.21	11.0	0.0	1.5	1	0	0	1	1	1	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_25	PF13481.1	gi|146303966|ref|YP_001191282.1|	-	0.11	11.8	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|146303966|ref|YP_001191282.1|	-	0.13	12.2	0.1	0.37	10.7	0.0	1.8	2	0	0	2	2	1	0	AAA	domain
CPT	PF07931.7	gi|146303966|ref|YP_001191282.1|	-	0.14	11.7	0.0	0.26	10.8	0.0	1.4	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
T2SF	PF00482.18	gi|146303967|ref|YP_001191283.1|	-	0.0003	20.7	0.1	0.0003	20.7	0.1	3.5	5	1	0	5	5	5	1	Type	II	secretion	system	(T2SS),	protein	F
TPP_enzyme_C	PF02775.16	gi|146303968|ref|YP_001191284.1|	-	5.9e-18	64.9	0.1	8.3e-18	64.4	0.1	1.2	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
DXP_synthase_N	PF13292.1	gi|146303968|ref|YP_001191284.1|	-	0.0071	15.3	0.0	0.013	14.4	0.0	1.4	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
POR_N	PF01855.14	gi|146303969|ref|YP_001191285.1|	-	1.9e-62	210.7	0.0	2.5e-62	210.4	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Transketolase_C	PF02780.15	gi|146303969|ref|YP_001191285.1|	-	2.7e-05	24.1	0.0	9.3e-05	22.3	0.0	1.8	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|146303969|ref|YP_001191285.1|	-	0.0085	15.5	0.1	0.014	14.8	0.1	1.4	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_21	PF14697.1	gi|146303970|ref|YP_001191286.1|	-	3.6e-12	45.9	12.8	5.5e-12	45.3	8.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146303970|ref|YP_001191286.1|	-	1.1e-09	37.4	20.0	7.7e-06	25.2	3.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146303970|ref|YP_001191286.1|	-	9.6e-07	29.4	9.5	0.0001	22.9	1.3	2.6	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_7	PF12838.2	gi|146303970|ref|YP_001191286.1|	-	1.1e-06	28.9	13.9	1.7e-06	28.3	9.2	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146303970|ref|YP_001191286.1|	-	1.3e-06	28.0	12.9	2.3e-06	27.2	8.9	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146303970|ref|YP_001191286.1|	-	3e-06	26.8	13.9	0.0045	16.8	2.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146303970|ref|YP_001191286.1|	-	1.4e-05	25.2	18.3	2.8e-05	24.2	12.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146303970|ref|YP_001191286.1|	-	7.3e-05	23.0	8.3	0.042	14.1	1.2	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146303970|ref|YP_001191286.1|	-	0.00025	21.0	14.0	0.0033	17.4	8.5	2.3	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146303970|ref|YP_001191286.1|	-	0.0013	18.5	22.2	0.021	14.6	5.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_18	PF13746.1	gi|146303970|ref|YP_001191286.1|	-	0.0062	16.9	16.0	0.061	13.7	4.1	2.8	2	1	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|146303970|ref|YP_001191286.1|	-	0.017	15.4	4.8	0.017	15.4	3.3	2.8	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_4	PF12800.2	gi|146303970|ref|YP_001191286.1|	-	0.088	13.1	18.5	0.29	11.5	3.6	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|146303970|ref|YP_001191286.1|	-	1.1	9.8	17.8	1.3	9.6	3.1	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
HTH_24	PF13412.1	gi|146303971|ref|YP_001191287.1|	-	3.4e-10	39.1	0.3	5.4e-10	38.5	0.2	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|146303971|ref|YP_001191287.1|	-	2.4e-08	33.3	0.0	4.2e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303971|ref|YP_001191287.1|	-	7.3e-08	32.0	0.0	1.1e-07	31.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|146303971|ref|YP_001191287.1|	-	3.2e-06	26.7	0.0	5.1e-06	26.0	0.0	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_11	PF08279.7	gi|146303971|ref|YP_001191287.1|	-	0.00075	19.0	0.1	0.0013	18.2	0.1	1.4	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.2	gi|146303971|ref|YP_001191287.1|	-	0.0051	16.4	0.0	0.0094	15.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_DeoR	PF08220.7	gi|146303971|ref|YP_001191287.1|	-	0.011	15.2	0.0	0.04	13.4	0.0	1.9	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
HTH_8	PF02954.14	gi|146303971|ref|YP_001191287.1|	-	0.018	14.5	0.0	0.073	12.6	0.0	2.0	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
HTH_27	PF13463.1	gi|146303971|ref|YP_001191287.1|	-	0.028	14.7	0.1	0.059	13.6	0.0	1.6	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_30	PF13556.1	gi|146303971|ref|YP_001191287.1|	-	0.036	13.6	0.0	0.078	12.5	0.0	1.5	1	0	0	1	1	1	0	PucR	C-terminal	helix-turn-helix	domain
Sigma70_r4	PF04545.11	gi|146303971|ref|YP_001191287.1|	-	0.056	12.7	0.0	0.095	12.0	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
MarR	PF01047.17	gi|146303971|ref|YP_001191287.1|	-	0.066	12.9	0.2	0.24	11.1	0.0	1.8	2	0	0	2	2	2	0	MarR	family
TrmB	PF01978.14	gi|146303971|ref|YP_001191287.1|	-	0.097	12.3	0.3	0.19	11.4	0.2	1.5	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_38	PF13936.1	gi|146303971|ref|YP_001191287.1|	-	0.11	12.0	0.0	0.22	11.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4038	PF13204.1	gi|146303971|ref|YP_001191287.1|	-	0.14	11.4	0.0	0.15	11.3	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4038)
Sporozoite_P67	PF05642.6	gi|146303972|ref|YP_001191288.1|	-	0.87	7.3	2.9	0.84	7.4	2.0	1.0	1	0	0	1	1	1	0	Sporozoite	P67	surface	antigen
IncA	PF04156.9	gi|146303972|ref|YP_001191288.1|	-	5.6	6.5	7.5	6.7	6.2	5.2	1.0	1	0	0	1	1	1	0	IncA	protein
MFS_1	PF07690.11	gi|146303973|ref|YP_001191289.1|	-	1.2e-20	73.6	61.7	5.5e-11	41.7	20.6	2.5	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Copper-bind	PF00127.15	gi|146303975|ref|YP_001191291.1|	-	2.7e-19	69.2	0.0	2.8e-08	33.8	0.0	3.0	2	2	0	2	2	2	2	Copper	binding	proteins,	plastocyanin/azurin	family
Cupredoxin_1	PF13473.1	gi|146303975|ref|YP_001191291.1|	-	1.9e-05	24.5	2.2	0.65	9.9	0.1	4.2	3	1	0	3	3	3	1	Cupredoxin-like	domain
DUF948	PF06103.6	gi|146303975|ref|YP_001191291.1|	-	0.002	17.9	2.9	0.17	11.7	1.1	3.0	2	1	0	2	2	2	1	Bacterial	protein	of	unknown	function	(DUF948)
BLOC1_2	PF10046.4	gi|146303975|ref|YP_001191291.1|	-	0.0058	16.7	1.2	0.012	15.7	0.2	1.9	2	0	0	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Phage_GP20	PF06810.6	gi|146303975|ref|YP_001191291.1|	-	0.0067	15.8	0.1	0.011	15.1	0.1	1.3	1	0	0	1	1	1	1	Phage	minor	structural	protein	GP20
NPV_P10	PF05531.7	gi|146303975|ref|YP_001191291.1|	-	0.013	15.7	4.0	0.092	13.0	2.6	2.2	1	1	0	1	1	1	0	Nucleopolyhedrovirus	P10	protein
T2SF	PF00482.18	gi|146303975|ref|YP_001191291.1|	-	0.059	13.2	1.1	0.16	11.8	0.8	1.7	1	0	0	1	1	1	0	Type	II	secretion	system	(T2SS),	protein	F
Rifin_STEVOR	PF02009.11	gi|146303975|ref|YP_001191291.1|	-	0.24	10.9	0.6	0.34	10.5	0.4	1.2	1	0	0	1	1	1	0	Rifin/stevor	family
DASH_Dam1	PF08653.5	gi|146303975|ref|YP_001191291.1|	-	0.25	11.1	1.4	2.6	7.8	0.0	2.2	1	1	1	2	2	2	0	DASH	complex	subunit	Dam1
TMF_DNA_bd	PF12329.3	gi|146303975|ref|YP_001191291.1|	-	0.32	10.8	2.0	0.66	9.8	1.1	1.7	1	1	1	2	2	2	0	TATA	element	modulatory	factor	1	DNA	binding
MbeD_MobD	PF04899.7	gi|146303975|ref|YP_001191291.1|	-	0.69	9.8	7.6	7.3	6.5	2.5	2.9	1	1	1	2	2	2	0	MbeD/MobD	like
FliD_N	PF02465.13	gi|146303975|ref|YP_001191291.1|	-	1.1	9.7	14.0	0.074	13.4	4.0	2.5	2	1	0	2	2	2	0	Flagellar	hook-associated	protein	2	N-terminus
Syntaxin_2	PF14523.1	gi|146303975|ref|YP_001191291.1|	-	6.7	6.8	10.4	6.1	6.9	1.9	2.6	1	1	1	2	2	2	0	Syntaxin-like	protein
DUF4149	PF13664.1	gi|146303976|ref|YP_001191292.1|	-	0.0033	17.4	0.9	0.0033	17.4	0.7	2.4	3	0	0	3	3	3	1	Domain	of	unknown	function	(DUF4149)
DUF2269	PF10027.4	gi|146303976|ref|YP_001191292.1|	-	0.014	15.1	5.2	0.055	13.2	1.9	2.2	2	0	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
DUF1772	PF08592.6	gi|146303976|ref|YP_001191292.1|	-	0.33	10.6	7.0	0.028	14.1	1.0	2.0	2	1	0	3	3	3	0	Domain	of	unknown	function	(DUF1772)
PepSY_TM_2	PF13703.1	gi|146303976|ref|YP_001191292.1|	-	1.4	9.1	0.0	1.4	9.1	0.0	2.9	1	1	2	3	3	3	0	PepSY-associated	TM	helix
DUF1772	PF08592.6	gi|146303977|ref|YP_001191293.1|	-	0.00052	19.7	0.3	0.001	18.8	0.1	1.5	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1772)
IncA	PF04156.9	gi|146303977|ref|YP_001191293.1|	-	0.018	14.6	0.3	0.033	13.7	0.2	1.5	1	1	0	1	1	1	0	IncA	protein
DUF2269	PF10027.4	gi|146303977|ref|YP_001191293.1|	-	0.32	10.7	7.7	1.1	9.0	3.8	2.1	1	1	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
HAMP	PF00672.20	gi|146303977|ref|YP_001191293.1|	-	0.5	10.5	0.0	0.5	10.5	0.0	2.9	3	1	1	4	4	4	0	HAMP	domain
DUF4407	PF14362.1	gi|146303977|ref|YP_001191293.1|	-	0.61	8.9	9.2	0.045	12.7	2.2	1.9	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4407)
HTH_24	PF13412.1	gi|146303978|ref|YP_001191294.1|	-	3.6e-12	45.4	0.2	6.1e-12	44.7	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|146303978|ref|YP_001191294.1|	-	4e-10	39.0	0.3	6.9e-10	38.3	0.2	1.4	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146303978|ref|YP_001191294.1|	-	1.8e-08	34.0	0.0	2.8e-08	33.4	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
AsnC_trans_reg	PF01037.16	gi|146303978|ref|YP_001191294.1|	-	7.9e-08	31.9	0.1	1.3e-07	31.1	0.1	1.4	1	0	0	1	1	1	1	AsnC	family
MarR_2	PF12802.2	gi|146303978|ref|YP_001191294.1|	-	0.00011	21.8	0.0	0.00017	21.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|146303978|ref|YP_001191294.1|	-	0.00072	19.1	0.0	0.0014	18.2	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_8	PF02954.14	gi|146303978|ref|YP_001191294.1|	-	0.0027	17.2	0.0	0.0043	16.5	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	Fis	family
HTH_30	PF13556.1	gi|146303978|ref|YP_001191294.1|	-	0.0038	16.7	0.1	0.045	13.3	0.0	2.4	3	0	0	3	3	3	1	PucR	C-terminal	helix-turn-helix	domain
HTH_10	PF04967.7	gi|146303978|ref|YP_001191294.1|	-	0.0055	16.2	0.0	0.013	15.0	0.0	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
MarR	PF01047.17	gi|146303978|ref|YP_001191294.1|	-	0.0092	15.6	0.0	0.016	14.8	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_Mga	PF08280.6	gi|146303978|ref|YP_001191294.1|	-	0.0092	15.7	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
TrmB	PF01978.14	gi|146303978|ref|YP_001191294.1|	-	0.0099	15.5	0.0	0.022	14.4	0.0	1.5	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
TFIIE_alpha	PF02002.12	gi|146303978|ref|YP_001191294.1|	-	0.014	14.8	0.1	0.032	13.7	0.1	1.5	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_34	PF13601.1	gi|146303978|ref|YP_001191294.1|	-	0.021	14.8	0.1	0.072	13.1	0.0	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_27	PF13463.1	gi|146303978|ref|YP_001191294.1|	-	0.076	13.3	0.1	0.17	12.2	0.0	1.6	2	0	0	2	2	1	0	Winged	helix	DNA-binding	domain
B-block_TFIIIC	PF04182.7	gi|146303978|ref|YP_001191294.1|	-	0.13	12.1	0.1	0.5	10.2	0.0	1.8	2	0	0	2	2	2	0	B-block	binding	subunit	of	TFIIIC
Rhodanese	PF00581.15	gi|146303979|ref|YP_001191295.1|	-	6.6e-39	132.7	0.2	5.3e-20	71.8	0.0	2.1	2	0	0	2	2	2	2	Rhodanese-like	domain
Transket_pyr	PF02779.19	gi|146303981|ref|YP_001191297.1|	-	5.1e-43	146.6	0.2	7.4e-43	146.1	0.1	1.2	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|146303981|ref|YP_001191297.1|	-	1.4e-33	115.4	0.1	4.4e-33	113.8	0.0	1.8	2	0	0	2	2	2	1	Transketolase,	C-terminal	domain
E1_dh	PF00676.15	gi|146303982|ref|YP_001191298.1|	-	3.7e-79	265.5	0.0	4.6e-79	265.2	0.0	1.1	1	0	0	1	1	1	1	Dehydrogenase	E1	component
DXP_synthase_N	PF13292.1	gi|146303982|ref|YP_001191298.1|	-	1.1e-07	31.0	0.0	1.6e-07	30.5	0.0	1.3	1	0	0	1	1	1	1	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|146303982|ref|YP_001191298.1|	-	3.1e-06	26.8	0.1	9.7e-06	25.2	0.1	1.9	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
PIN	PF01850.16	gi|146303983|ref|YP_001191299.1|	-	2.6e-17	63.2	0.1	3.1e-17	63.0	0.1	1.0	1	0	0	1	1	1	1	PIN	domain
CcdA	PF07362.7	gi|146303984|ref|YP_001191300.1|	-	0.0098	15.7	0.2	0.013	15.3	0.1	1.2	1	0	0	1	1	1	1	Post-segregation	antitoxin	CcdA
CBFB_NFYA	PF02045.10	gi|146303984|ref|YP_001191300.1|	-	0.14	12.7	0.5	0.14	12.7	0.4	1.5	2	0	0	2	2	2	0	CCAAT-binding	transcription	factor	(CBF-B/NF-YA)	subunit	B
AHH	PF14412.1	gi|146303984|ref|YP_001191300.1|	-	0.16	11.9	1.0	0.23	11.4	0.5	1.3	1	1	0	1	1	1	0	A	nuclease	family	of	the	HNH/ENDO	VII	superfamily	with	conserved	AHH
MaoC_dehydratas	PF01575.14	gi|146303985|ref|YP_001191301.1|	-	2.8e-27	94.5	0.0	2.5e-12	46.2	0.0	2.1	2	0	0	2	2	2	2	MaoC	like	domain
MaoC_dehydrat_N	PF13452.1	gi|146303985|ref|YP_001191301.1|	-	4e-07	29.8	0.0	2.1e-05	24.3	0.0	2.3	2	0	0	2	2	2	1	N-terminal	half	of	MaoC	dehydratase
4HBT	PF03061.17	gi|146303985|ref|YP_001191301.1|	-	0.015	15.3	0.1	3.6	7.7	0.0	2.9	2	0	0	2	2	2	0	Thioesterase	superfamily
AcetylCoA_hyd_C	PF13336.1	gi|146303986|ref|YP_001191302.1|	-	1.5e-41	141.6	0.0	2.1e-41	141.1	0.0	1.2	1	0	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	C-terminal	domain
AcetylCoA_hydro	PF02550.10	gi|146303986|ref|YP_001191302.1|	-	4.7e-13	49.3	0.0	7.7e-13	48.6	0.0	1.2	1	0	0	1	1	1	1	Acetyl-CoA	hydrolase/transferase	N-terminal	domain
CitF	PF04223.7	gi|146303986|ref|YP_001191302.1|	-	9.3e-08	31.1	0.2	1.5e-07	30.5	0.1	1.2	1	0	0	1	1	1	1	Citrate	lyase,	alpha	subunit	(CitF)
Acyl-CoA_dh_1	PF00441.19	gi|146303987|ref|YP_001191303.1|	-	2.1e-25	89.5	0.0	3.4e-25	88.8	0.0	1.3	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146303987|ref|YP_001191303.1|	-	3.2e-16	58.5	0.0	5.8e-16	57.7	0.0	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.11	gi|146303987|ref|YP_001191303.1|	-	2.4e-09	37.7	0.0	4.5e-09	36.8	0.0	1.5	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|146303987|ref|YP_001191303.1|	-	5.1e-07	30.0	0.0	8.2e-07	29.3	0.0	1.2	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Amidohydro_1	PF01979.15	gi|146303988|ref|YP_001191304.1|	-	1.1e-38	133.7	0.0	1.2e-38	133.5	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|146303988|ref|YP_001191304.1|	-	4.6e-15	56.3	0.0	8.8e-07	29.2	0.0	2.4	1	1	1	2	2	2	2	Amidohydrolase
Amidohydro_3	PF07969.6	gi|146303988|ref|YP_001191304.1|	-	7.5e-09	35.2	2.4	4.9e-06	26.0	0.0	2.8	1	1	1	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|146303988|ref|YP_001191304.1|	-	1.6e-08	34.2	0.0	3.6e-08	33.0	0.0	1.6	1	0	0	1	1	1	1	Amidohydrolase
HpaB_N	PF11794.3	gi|146303989|ref|YP_001191305.1|	-	2.2e-71	240.3	0.4	4e-71	239.5	0.3	1.4	1	1	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|146303989|ref|YP_001191305.1|	-	5.1e-48	162.6	0.1	6.8e-48	162.2	0.1	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Acyl-CoA_dh_1	PF00441.19	gi|146303989|ref|YP_001191305.1|	-	0.036	14.1	0.0	0.066	13.3	0.0	1.5	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase,	C-terminal	domain
HTH_10	PF04967.7	gi|146303990|ref|YP_001191306.1|	-	8.5e-15	54.0	0.0	1.3e-14	53.4	0.0	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
Apt1	PF10351.4	gi|146303990|ref|YP_001191306.1|	-	0.072	11.9	0.1	0.11	11.3	0.1	1.3	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
LacI	PF00356.16	gi|146303990|ref|YP_001191306.1|	-	0.12	11.9	0.5	0.57	9.8	0.1	2.3	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	lacI	family
Sugar_tr	PF00083.19	gi|146303991|ref|YP_001191307.1|	-	2.5e-42	145.0	31.0	3.5e-42	144.5	21.5	1.3	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146303991|ref|YP_001191307.1|	-	2.7e-40	138.1	43.6	2.7e-40	138.1	30.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_2	PF13347.1	gi|146303991|ref|YP_001191307.1|	-	9e-09	34.2	31.4	7.9e-07	27.8	5.6	3.0	2	1	1	3	3	3	2	MFS/sugar	transport	protein
DUF1228	PF06779.9	gi|146303991|ref|YP_001191307.1|	-	0.0058	16.6	0.5	0.0058	16.6	0.4	3.4	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF1228)
DUF4538	PF15061.1	gi|146303991|ref|YP_001191307.1|	-	2.2	7.6	5.8	0.65	9.3	0.5	2.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4538)
adh_short	PF00106.20	gi|146303992|ref|YP_001191308.1|	-	1.1e-29	103.5	0.1	2.2e-29	102.5	0.0	1.5	2	0	0	2	2	2	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|146303992|ref|YP_001191308.1|	-	3.2e-27	95.8	0.0	3.9e-27	95.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
KR	PF08659.5	gi|146303992|ref|YP_001191308.1|	-	4.1e-08	33.1	0.0	1.2e-07	31.5	0.0	1.7	2	0	0	2	2	2	1	KR	domain
DUF3022	PF11226.3	gi|146303992|ref|YP_001191308.1|	-	0.068	13.0	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3022)
AMP-binding	PF00501.23	gi|146303993|ref|YP_001191309.1|	-	1.2e-75	254.5	0.0	1.6e-75	254.0	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146303993|ref|YP_001191309.1|	-	1e-16	61.6	0.0	2.3e-16	60.4	0.0	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
HTH_20	PF12840.2	gi|146303993|ref|YP_001191309.1|	-	1.3e-11	44.0	0.0	3.6e-11	42.7	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|146303993|ref|YP_001191309.1|	-	2.3e-07	30.3	0.0	6.1e-07	29.0	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.2	gi|146303993|ref|YP_001191309.1|	-	0.14	11.8	0.0	0.33	10.6	0.0	1.6	1	0	0	1	1	1	0	MarR	family
TAF1D	PF15333.1	gi|146303994|ref|YP_001191310.1|	-	0.07	12.9	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	TATA	box-binding	protein-associated	factor	1D
Nitroreductase	PF00881.19	gi|146303995|ref|YP_001191311.1|	-	3.5e-27	95.2	0.0	4.5e-27	94.8	0.0	1.1	1	0	0	1	1	1	1	Nitroreductase	family
TM_helix	PF05552.7	gi|146303996|ref|YP_001191312.1|	-	1.5e-13	50.1	8.3	2e-08	33.7	0.6	4.3	4	1	1	5	5	5	2	Conserved	TM	helix
Thermopsin	PF05317.6	gi|146303999|ref|YP_001191315.1|	-	3.3e-94	314.7	23.0	3.7e-94	314.5	15.9	1.0	1	0	0	1	1	1	1	Thermopsin
Thermopsin	PF05317.6	gi|146304000|ref|YP_001191316.1|	-	1.8e-60	204.1	25.9	1.8e-60	204.1	17.9	5.7	3	2	1	4	4	4	1	Thermopsin
DUF3961	PF13106.1	gi|146304001|ref|YP_001191317.1|	-	0.028	13.9	2.9	0.028	13.9	2.0	2.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF3961)
DUF4191	PF13829.1	gi|146304001|ref|YP_001191317.1|	-	0.11	11.6	1.5	0.12	11.4	0.1	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4191)
DUF4231	PF14015.1	gi|146304001|ref|YP_001191317.1|	-	0.13	12.2	12.3	0.86	9.6	0.6	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF4231)
NfeD	PF01957.13	gi|146304001|ref|YP_001191317.1|	-	1.2	9.3	4.1	1.2	9.2	0.1	2.4	3	0	0	3	3	3	0	NfeD-like	C-terminal,	partner-binding
DUF843	PF05814.6	gi|146304001|ref|YP_001191317.1|	-	2	8.2	15.9	0.029	14.1	4.3	2.6	1	1	2	3	3	3	0	Baculovirus	protein	of	unknown	function	(DUF843)
DUF3043	PF11241.3	gi|146304001|ref|YP_001191317.1|	-	2.5	7.6	6.1	13	5.3	0.2	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3043)
ABC_tran	PF00005.22	gi|146304002|ref|YP_001191318.1|	-	3.8e-28	98.4	0.0	5.2e-28	98.0	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304002|ref|YP_001191318.1|	-	7.9e-12	45.7	0.4	2.4e-05	24.4	0.1	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146304002|ref|YP_001191318.1|	-	0.00039	19.7	0.6	0.091	11.9	0.0	2.1	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|146304002|ref|YP_001191318.1|	-	0.0012	17.9	0.1	0.11	11.5	0.1	2.2	1	1	1	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146304002|ref|YP_001191318.1|	-	0.0022	17.4	0.1	0.0041	16.6	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_30	PF13604.1	gi|146304002|ref|YP_001191318.1|	-	0.003	17.1	0.0	0.0049	16.4	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MobB	PF03205.9	gi|146304002|ref|YP_001191318.1|	-	0.047	13.3	0.1	1.4	8.6	0.0	2.1	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_23	PF13476.1	gi|146304002|ref|YP_001191318.1|	-	0.33	11.2	2.1	0.53	10.5	0.3	1.8	1	1	1	2	2	2	0	AAA	domain
Sec62	PF03839.11	gi|146304003|ref|YP_001191319.1|	-	2.6	7.3	7.9	0.18	11.2	1.4	2.0	2	0	0	2	2	2	0	Translocation	protein	Sec62
AAA_21	PF13304.1	gi|146304004|ref|YP_001191320.1|	-	4.5e-28	99.0	0.9	1.3e-27	97.5	0.6	1.7	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146304004|ref|YP_001191320.1|	-	3.4e-11	42.7	2.1	4.5e-09	35.8	0.4	2.3	2	1	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_23	PF13476.1	gi|146304004|ref|YP_001191320.1|	-	1.6e-09	38.4	0.3	3.1e-09	37.4	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_15	PF13175.1	gi|146304004|ref|YP_001191320.1|	-	4.6e-08	32.5	0.6	7.8e-05	21.8	0.0	2.1	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146304004|ref|YP_001191320.1|	-	2.1e-05	23.9	0.1	7.3e-05	22.2	0.0	1.9	1	1	1	2	2	2	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|146304004|ref|YP_001191320.1|	-	0.035	14.3	0.0	0.068	13.4	0.0	1.4	1	0	0	1	1	1	0	ABC	transporter
AAA_16	PF13191.1	gi|146304004|ref|YP_001191320.1|	-	0.097	12.6	0.0	0.46	10.4	0.0	1.9	2	0	0	2	2	2	0	AAA	ATPase	domain
Lactamase_B	PF00753.22	gi|146304005|ref|YP_001191321.1|	-	2.4e-09	37.1	1.5	3.5e-09	36.6	1.0	1.5	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146304005|ref|YP_001191321.1|	-	4.1e-05	23.2	0.0	4.8e-05	22.9	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.1	gi|146304005|ref|YP_001191321.1|	-	0.02	14.6	0.0	0.033	13.8	0.0	1.4	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
Ubie_methyltran	PF01209.13	gi|146304006|ref|YP_001191322.1|	-	4e-20	71.9	0.1	7.5e-20	71.0	0.1	1.3	1	1	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_11	PF08241.7	gi|146304006|ref|YP_001191322.1|	-	1.4e-14	54.3	0.1	2.1e-14	53.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146304006|ref|YP_001191322.1|	-	4e-09	36.7	0.1	9.3e-09	35.5	0.0	1.7	2	0	0	2	2	1	1	Methyltransferase	domain
MetW	PF07021.7	gi|146304006|ref|YP_001191322.1|	-	8.7e-09	35.0	0.0	1.2e-08	34.6	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_31	PF13847.1	gi|146304006|ref|YP_001191322.1|	-	1.3e-08	34.6	0.0	3.5e-08	33.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146304006|ref|YP_001191322.1|	-	2.1e-07	30.7	0.0	3e-07	30.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146304006|ref|YP_001191322.1|	-	2.4e-06	27.9	0.0	4.7e-06	27.0	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146304006|ref|YP_001191322.1|	-	3.7e-05	24.2	0.0	0.00022	21.8	0.0	2.0	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|146304006|ref|YP_001191322.1|	-	0.028	14.0	0.0	0.049	13.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146304006|ref|YP_001191322.1|	-	0.039	13.9	0.0	0.065	13.2	0.0	1.6	1	1	0	1	1	1	0	Methyltransferase	domain
MTS	PF05175.9	gi|146304006|ref|YP_001191322.1|	-	0.11	11.8	0.0	0.23	10.8	0.0	1.5	1	1	0	1	1	1	0	Methyltransferase	small	domain
DUF981	PF06168.6	gi|146304007|ref|YP_001191323.1|	-	1.2e-67	227.4	17.1	1.3e-67	227.2	11.8	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF981)
Colicin_V	PF02674.11	gi|146304007|ref|YP_001191323.1|	-	2.2e-05	24.3	7.3	2.2e-05	24.3	5.1	2.5	3	1	0	3	3	3	1	Colicin	V	production	protein
Cyt_c_ox_IV	PF12270.3	gi|146304007|ref|YP_001191323.1|	-	0.12	12.0	0.1	0.12	12.0	0.1	2.6	2	1	1	3	3	3	0	Cytochrome	c	oxidase	subunit	IV
DUF4436	PF14494.1	gi|146304007|ref|YP_001191323.1|	-	3.3	6.9	8.3	0.31	10.2	2.1	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4436)
Tetraspannin	PF00335.15	gi|146304007|ref|YP_001191323.1|	-	5.3	6.2	21.0	5.1	6.2	5.3	3.0	1	1	2	3	3	3	0	Tetraspanin	family
Hemerythrin	PF01814.18	gi|146304008|ref|YP_001191324.1|	-	0.00048	20.2	0.3	0.0013	18.8	0.2	1.7	1	1	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
Pyr_redox_2	PF07992.9	gi|146304009|ref|YP_001191325.1|	-	9.2e-38	130.1	4.1	2.8e-36	125.2	2.8	3.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146304009|ref|YP_001191325.1|	-	1.5e-30	105.4	0.7	3e-30	104.4	0.5	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|146304009|ref|YP_001191325.1|	-	1.1e-10	41.8	0.3	1.1e-10	41.8	0.2	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146304009|ref|YP_001191325.1|	-	2.3e-10	40.8	0.0	1.8e-05	24.8	0.0	2.7	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146304009|ref|YP_001191325.1|	-	3.5e-09	36.0	5.3	0.0013	17.6	0.5	3.6	3	1	0	4	4	4	3	Glucose	inhibited	division	protein	A
HI0933_like	PF03486.9	gi|146304009|ref|YP_001191325.1|	-	1.3e-06	27.2	3.0	0.0042	15.6	0.0	3.1	3	0	0	3	3	3	2	HI0933-like	protein
DAO	PF01266.19	gi|146304009|ref|YP_001191325.1|	-	2.8e-06	26.5	4.7	0.00028	19.9	0.5	3.1	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
K_oxygenase	PF13434.1	gi|146304009|ref|YP_001191325.1|	-	0.16	10.8	0.0	0.9	8.3	0.0	1.9	1	1	1	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
FAD_binding_2	PF00890.19	gi|146304009|ref|YP_001191325.1|	-	0.22	10.3	9.3	3.3	6.4	0.0	3.2	2	1	0	3	3	3	0	FAD	binding	domain
zf-FCS	PF06467.9	gi|146304010|ref|YP_001191326.1|	-	1.1e-08	34.6	1.4	1.5e-08	34.0	1.0	1.3	1	0	0	1	1	1	1	MYM-type	Zinc	finger	with	FCS	sequence	motif
Arc_trans_TRASH	PF08394.5	gi|146304010|ref|YP_001191326.1|	-	7.7e-05	22.7	2.4	0.00014	21.9	1.7	1.5	1	0	0	1	1	1	1	Archaeal	TRASH	domain
YHS	PF04945.8	gi|146304010|ref|YP_001191326.1|	-	9.7e-05	22.1	1.3	0.00014	21.6	0.9	1.2	1	0	0	1	1	1	1	YHS	domain
zf-FPG_IleRS	PF06827.9	gi|146304010|ref|YP_001191326.1|	-	0.00053	19.5	7.6	0.0043	16.6	5.2	2.1	1	1	0	1	1	1	1	Zinc	finger	found	in	FPG	and	IleRS
DUF1610	PF07754.6	gi|146304010|ref|YP_001191326.1|	-	0.0047	17.0	0.2	0.0047	17.0	0.1	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1610)
ATPase-cat_bd	PF12156.3	gi|146304010|ref|YP_001191326.1|	-	0.0061	17.0	9.4	0.0077	16.7	6.5	1.2	1	0	0	1	1	1	1	Putative	metal-binding	domain	of	cation	transport	ATPase
DUF2175	PF09943.4	gi|146304010|ref|YP_001191326.1|	-	0.0064	16.5	3.2	0.0077	16.2	2.2	1.2	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
Ta0938	PF11494.3	gi|146304010|ref|YP_001191326.1|	-	0.024	14.7	0.1	0.026	14.6	0.1	1.1	1	0	0	1	1	1	0	Ta0938
Ribosomal_L24e	PF01246.15	gi|146304010|ref|YP_001191326.1|	-	0.027	14.3	0.6	0.041	13.7	0.4	1.3	1	0	0	1	1	1	0	Ribosomal	protein	L24e
Rad50_zn_hook	PF04423.9	gi|146304010|ref|YP_001191326.1|	-	0.15	11.5	0.3	0.15	11.5	0.2	1.6	2	0	0	2	2	1	0	Rad50	zinc	hook	motif
LIM	PF00412.17	gi|146304010|ref|YP_001191326.1|	-	0.28	11.2	9.8	8.3	6.5	6.8	2.1	1	1	0	1	1	1	0	LIM	domain
Zn_ribbon_recom	PF13408.1	gi|146304010|ref|YP_001191326.1|	-	0.38	11.0	7.5	0.45	10.8	5.2	1.1	1	0	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Zn_ribbon_2	PF12674.2	gi|146304010|ref|YP_001191326.1|	-	0.42	10.9	4.4	0.51	10.7	3.1	1.2	1	0	0	1	1	1	0	Putative	zinc	ribbon	domain
zf-C3HC4_3	PF13920.1	gi|146304010|ref|YP_001191326.1|	-	5.7	6.6	11.2	17	5.2	7.8	1.7	1	1	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
B12-binding	PF02310.14	gi|146304011|ref|YP_001191327.1|	-	1.6e-21	76.3	0.2	6.3e-21	74.4	0.1	2.0	2	1	0	2	2	2	1	B12	binding	domain
Radical_SAM	PF04055.16	gi|146304011|ref|YP_001191327.1|	-	2.8e-18	66.6	0.0	8.6e-18	65.0	0.0	1.9	2	0	0	2	2	2	1	Radical	SAM	superfamily
PTS_2-RNA	PF01885.11	gi|146304011|ref|YP_001191327.1|	-	0.1	11.9	0.0	0.22	10.8	0.0	1.5	1	0	0	1	1	1	0	RNA	2'-phosphotransferase,	Tpt1	/	KptA	family
PIN	PF01850.16	gi|146304013|ref|YP_001191329.1|	-	1.1e-14	54.8	1.0	1.2e-14	54.6	0.7	1.0	1	0	0	1	1	1	1	PIN	domain
DUF217	PF02697.9	gi|146304014|ref|YP_001191330.1|	-	0.086	13.1	1.6	0.13	12.5	1.1	1.5	1	1	0	1	1	1	0	Uncharacterized	ACR,	COG1753
TBPIP_N	PF15517.1	gi|146304014|ref|YP_001191330.1|	-	0.087	12.4	0.1	0.1	12.2	0.0	1.1	1	0	0	1	1	1	0	TBP-interacting	protein	N-terminus
HEAT_2	PF13646.1	gi|146304015|ref|YP_001191331.1|	-	0.0047	17.1	0.0	0.082	13.2	0.0	2.2	1	1	1	2	2	2	1	HEAT	repeats
Arm	PF00514.18	gi|146304015|ref|YP_001191331.1|	-	0.02	14.7	0.1	0.55	10.1	0.0	2.6	2	0	0	2	2	2	0	Armadillo/beta-catenin-like	repeat
HEAT	PF02985.17	gi|146304015|ref|YP_001191331.1|	-	0.022	14.7	0.1	0.078	13.0	0.0	1.9	2	0	0	2	2	2	0	HEAT	repeat
ETF	PF01012.16	gi|146304016|ref|YP_001191332.1|	-	1.2e-77	259.2	0.9	2.7e-38	131.2	0.7	2.7	3	0	0	3	3	3	2	Electron	transfer	flavoprotein	domain
ETF_alpha	PF00766.14	gi|146304016|ref|YP_001191332.1|	-	5.7e-33	112.4	0.9	1.1e-32	111.4	0.7	1.5	1	0	0	1	1	1	1	Electron	transfer	flavoprotein	FAD-binding	domain
Usp	PF00582.21	gi|146304016|ref|YP_001191332.1|	-	0.051	13.7	0.1	0.39	10.9	0.0	2.3	2	0	0	2	2	2	0	Universal	stress	protein	family
DAO	PF01266.19	gi|146304017|ref|YP_001191333.1|	-	3e-11	42.8	1.8	4e-05	22.6	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|146304017|ref|YP_001191333.1|	-	3.5e-09	36.2	0.6	4.2e-09	35.9	0.4	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
Pyr_redox_2	PF07992.9	gi|146304017|ref|YP_001191333.1|	-	4e-07	30.1	1.0	8.8e-07	28.9	0.7	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146304017|ref|YP_001191333.1|	-	8.3e-07	28.3	0.5	0.0002	20.5	0.4	2.5	1	1	0	1	1	1	1	FAD	binding	domain
HI0933_like	PF03486.9	gi|146304017|ref|YP_001191333.1|	-	1.4e-06	27.0	3.8	2.1e-06	26.4	0.8	2.0	2	0	0	2	2	2	1	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|146304017|ref|YP_001191333.1|	-	5.3e-06	25.5	3.3	5.3e-06	25.5	2.3	1.5	2	0	0	2	2	2	1	FAD	binding	domain
GIDA	PF01134.17	gi|146304017|ref|YP_001191333.1|	-	5.4e-06	25.5	4.1	1.5e-05	24.0	2.9	1.7	1	1	0	1	1	1	1	Glucose	inhibited	division	protein	A
NAD_binding_8	PF13450.1	gi|146304017|ref|YP_001191333.1|	-	1.3e-05	25.1	0.2	3.3e-05	23.8	0.1	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|146304017|ref|YP_001191333.1|	-	0.00017	21.7	0.1	0.00036	20.6	0.1	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.12	gi|146304017|ref|YP_001191333.1|	-	0.00023	20.3	0.4	0.00044	19.4	0.3	1.4	1	0	0	1	1	1	1	Thi4	family
Pyr_redox	PF00070.22	gi|146304017|ref|YP_001191333.1|	-	0.013	15.8	0.2	0.033	14.5	0.1	1.7	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|146304017|ref|YP_001191333.1|	-	0.014	14.2	0.6	0.024	13.5	0.4	1.3	1	0	0	1	1	1	0	Lycopene	cyclase	protein
Nuc_rec_co-act	PF08815.5	gi|146304017|ref|YP_001191333.1|	-	0.12	11.8	0.0	0.55	9.8	0.0	1.9	2	0	0	2	2	2	0	Nuclear	receptor	coactivator
Fer4_7	PF12838.2	gi|146304018|ref|YP_001191334.1|	-	7.6e-07	29.4	24.3	6.4e-05	23.2	9.1	2.1	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304018|ref|YP_001191334.1|	-	9.9e-06	25.2	11.3	2.1e-05	24.2	7.9	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146304018|ref|YP_001191334.1|	-	1e-05	24.8	1.8	1e-05	24.8	1.2	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146304018|ref|YP_001191334.1|	-	1e-05	25.4	6.1	0.00033	20.6	0.4	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146304018|ref|YP_001191334.1|	-	2.5e-05	24.4	13.0	0.00031	20.9	8.8	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146304018|ref|YP_001191334.1|	-	2.5e-05	23.8	12.2	3.8e-05	23.3	0.7	2.5	2	1	0	2	2	2	1	4Fe-4S	binding	domain
ETF_QO	PF05187.8	gi|146304018|ref|YP_001191334.1|	-	0.00055	19.9	0.5	0.00071	19.5	0.4	1.1	1	0	0	1	1	1	1	Electron	transfer	flavoprotein-ubiquinone	oxidoreductase
Fer4_6	PF12837.2	gi|146304018|ref|YP_001191334.1|	-	0.0006	19.5	15.2	0.0012	18.6	1.7	2.9	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304018|ref|YP_001191334.1|	-	0.00084	19.4	3.1	0.00084	19.4	2.2	2.6	2	1	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|146304018|ref|YP_001191334.1|	-	0.0015	18.3	5.6	0.0021	17.8	3.9	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146304018|ref|YP_001191334.1|	-	0.0032	17.9	16.4	0.021	15.3	3.1	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|146304018|ref|YP_001191334.1|	-	0.0059	16.9	2.2	0.0059	16.9	1.5	2.4	1	1	2	3	3	3	1	4Fe-4S	dicluster	domain
A2L_zn_ribbon	PF08792.5	gi|146304018|ref|YP_001191334.1|	-	0.056	12.9	3.9	0.45	10.0	0.3	2.4	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
Fer4_16	PF13484.1	gi|146304018|ref|YP_001191334.1|	-	0.11	13.2	13.1	0.21	12.3	1.8	2.4	1	1	2	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.1	gi|146304018|ref|YP_001191334.1|	-	0.14	12.0	13.8	1.4	8.8	9.6	2.4	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304018|ref|YP_001191334.1|	-	0.43	11.0	14.6	94	3.5	10.1	2.5	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
zf-C2HC5	PF06221.8	gi|146304018|ref|YP_001191334.1|	-	5.7	6.7	10.3	0.56	10.0	1.2	2.2	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
Fer4_20	PF14691.1	gi|146304018|ref|YP_001191334.1|	-	8.6	6.0	11.4	5.8	6.5	1.9	2.1	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
CBS	PF00571.23	gi|146304019|ref|YP_001191335.1|	-	8.5e-25	86.2	2.5	6e-12	45.1	0.8	2.0	2	0	0	2	2	2	2	CBS	domain
PUA_2	PF14306.1	gi|146304019|ref|YP_001191335.1|	-	0.069	12.5	0.1	0.22	10.8	0.0	1.7	2	0	0	2	2	2	0	PUA-like	domain
MFS_1	PF07690.11	gi|146304020|ref|YP_001191336.1|	-	2.6e-23	82.3	51.5	1.5e-12	46.8	18.7	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_1	PF07690.11	gi|146304021|ref|YP_001191337.1|	-	1.5e-40	138.9	54.8	2.1e-25	89.2	16.4	3.1	1	1	2	3	3	3	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146304021|ref|YP_001191337.1|	-	6.6e-05	21.6	40.7	0.0012	17.4	10.7	3.8	3	1	0	4	4	4	3	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|146304021|ref|YP_001191337.1|	-	0.00021	19.5	2.4	0.00021	19.5	1.7	2.1	3	0	0	3	3	3	1	Transmembrane	secretion	effector
DUF3464	PF11947.3	gi|146304021|ref|YP_001191337.1|	-	0.82	9.1	0.0	0.82	9.1	0.0	3.2	4	1	1	5	5	5	0	Protein	of	unknown	function	(DUF3464)
DUF2583	PF10762.4	gi|146304021|ref|YP_001191337.1|	-	4.8	7.3	11.5	0.26	11.4	0.1	4.0	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF2583)
DUF3211	PF11485.3	gi|146304022|ref|YP_001191338.1|	-	1e-46	158.3	0.1	1.1e-46	158.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
Polyketide_cyc2	PF10604.4	gi|146304022|ref|YP_001191338.1|	-	0.00048	20.3	0.0	0.0006	19.9	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
COXG	PF06240.8	gi|146304022|ref|YP_001191338.1|	-	0.022	14.4	0.0	0.13	11.9	0.0	1.9	1	1	1	2	2	2	0	Carbon	monoxide	dehydrogenase	subunit	G	(CoxG)
RmlD_sub_bind	PF04321.12	gi|146304023|ref|YP_001191339.1|	-	2.1e-65	220.4	0.0	2.3e-65	220.3	0.0	1.0	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Epimerase	PF01370.16	gi|146304023|ref|YP_001191339.1|	-	2e-19	69.9	0.0	5.5e-19	68.5	0.0	1.6	1	1	1	2	2	2	1	NAD	dependent	epimerase/dehydratase	family
NAD_binding_4	PF07993.7	gi|146304023|ref|YP_001191339.1|	-	4e-12	45.5	0.0	2.9e-10	39.5	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
Polysacc_synt_2	PF02719.10	gi|146304023|ref|YP_001191339.1|	-	1.6e-10	40.3	0.1	1.9e-07	30.3	0.0	2.8	1	1	1	2	2	2	2	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|146304023|ref|YP_001191339.1|	-	5.3e-08	31.9	0.4	9.4e-07	27.7	0.3	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.1	gi|146304023|ref|YP_001191339.1|	-	0.0012	18.8	0.0	0.0021	18.0	0.0	1.4	1	0	0	1	1	1	1	NADH(P)-binding
DapB_N	PF01113.15	gi|146304023|ref|YP_001191339.1|	-	0.0053	16.6	0.1	0.011	15.6	0.0	1.6	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
HTH_45	PF14947.1	gi|146304026|ref|YP_001191342.1|	-	2.7e-25	87.9	1.1	3.5e-25	87.6	0.8	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HemN_C	PF06969.11	gi|146304026|ref|YP_001191342.1|	-	0.0037	17.2	0.0	0.0079	16.2	0.0	1.6	2	0	0	2	2	2	1	HemN	C-terminal	domain
AAA_assoc_C	PF09821.4	gi|146304026|ref|YP_001191342.1|	-	0.029	14.6	0.0	0.036	14.3	0.0	1.2	1	0	0	1	1	1	0	C-terminal	AAA-associated	domain
DUF2806	PF10987.3	gi|146304026|ref|YP_001191342.1|	-	0.032	13.7	0.1	0.035	13.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2806)
DUF4546	PF15079.1	gi|146304026|ref|YP_001191342.1|	-	0.073	12.1	3.7	0.1	11.7	2.6	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4546)
DUF4393	PF14337.1	gi|146304026|ref|YP_001191342.1|	-	0.075	12.4	0.0	0.084	12.3	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4393)
DUF4405	PF14358.1	gi|146304027|ref|YP_001191343.1|	-	0.053	13.6	3.0	0.06	13.4	0.2	2.3	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4405)
Peptidase_S24	PF00717.18	gi|146304029|ref|YP_001191345.1|	-	2.1e-06	27.2	0.7	4.4e-06	26.2	0.3	1.7	2	0	0	2	2	2	1	Peptidase	S24-like
DUF4477	PF14780.1	gi|146304030|ref|YP_001191346.1|	-	0.00066	19.0	0.2	0.00097	18.5	0.1	1.3	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4477)
Rieske	PF00355.21	gi|146304031|ref|YP_001191347.1|	-	7.5e-14	51.0	0.2	8.1e-14	50.9	0.1	1.1	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|146304031|ref|YP_001191347.1|	-	3.2e-08	33.2	0.0	3.9e-08	32.9	0.0	1.1	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
Ferritin	PF00210.19	gi|146304032|ref|YP_001191348.1|	-	2.7e-21	75.8	0.5	3.5e-21	75.4	0.4	1.1	1	0	0	1	1	1	1	Ferritin-like	domain
Rubrerythrin	PF02915.12	gi|146304032|ref|YP_001191348.1|	-	4.5e-06	27.0	0.6	5.7e-06	26.6	0.4	1.1	1	0	0	1	1	1	1	Rubrerythrin
DUF4439	PF14530.1	gi|146304032|ref|YP_001191348.1|	-	0.094	13.1	0.2	1.1	9.7	0.0	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4439)
Ferritin_2	PF13668.1	gi|146304032|ref|YP_001191348.1|	-	0.11	12.4	0.0	0.17	11.8	0.0	1.3	1	1	0	1	1	1	0	Ferritin-like	domain
Nramp	PF01566.13	gi|146304033|ref|YP_001191349.1|	-	3e-32	111.7	18.6	4.2e-32	111.3	12.9	1.1	1	0	0	1	1	1	1	Natural	resistance-associated	macrophage	protein
HTH_45	PF14947.1	gi|146304035|ref|YP_001191351.1|	-	7.9e-26	89.6	1.2	1e-25	89.3	0.8	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_24	PF13412.1	gi|146304035|ref|YP_001191351.1|	-	0.00045	19.5	0.0	0.0011	18.3	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Ribosomal_S19e	PF01090.14	gi|146304035|ref|YP_001191351.1|	-	0.011	15.1	0.0	0.014	14.8	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	protein	S19e
TrmB	PF01978.14	gi|146304035|ref|YP_001191351.1|	-	0.065	12.9	0.1	0.2	11.4	0.0	1.7	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
DUF724	PF05266.9	gi|146304035|ref|YP_001191351.1|	-	0.076	12.6	0.1	0.083	12.4	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
NAD_kinase	PF01513.16	gi|146304036|ref|YP_001191352.1|	-	1e-30	106.5	0.0	1.4e-30	106.0	0.0	1.1	1	0	0	1	1	1	1	ATP-NAD	kinase
TrmB	PF01978.14	gi|146304036|ref|YP_001191352.1|	-	1.2e-05	24.8	0.8	3.1e-05	23.5	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146304036|ref|YP_001191352.1|	-	4.4e-05	23.7	0.0	0.00025	21.2	0.0	2.2	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
HTH_9	PF08221.6	gi|146304036|ref|YP_001191352.1|	-	0.00088	19.1	0.0	0.002	17.9	0.0	1.6	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_5	PF01022.15	gi|146304036|ref|YP_001191352.1|	-	0.0012	18.4	0.0	0.0026	17.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_DeoR	PF08220.7	gi|146304036|ref|YP_001191352.1|	-	0.0024	17.3	0.0	0.006	16.0	0.0	1.6	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304036|ref|YP_001191352.1|	-	0.0027	17.3	0.0	0.0061	16.1	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|146304036|ref|YP_001191352.1|	-	0.003	17.3	0.0	0.0067	16.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF3489	PF11994.3	gi|146304036|ref|YP_001191352.1|	-	0.0034	17.2	0.0	0.008	16.0	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3489)
HTH_24	PF13412.1	gi|146304036|ref|YP_001191352.1|	-	0.004	16.5	1.2	0.012	15.0	0.0	2.4	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
MarR	PF01047.17	gi|146304036|ref|YP_001191352.1|	-	0.027	14.1	0.0	0.053	13.2	0.0	1.4	1	0	0	1	1	1	0	MarR	family
Penicillinase_R	PF03965.11	gi|146304036|ref|YP_001191352.1|	-	0.03	14.4	0.0	0.055	13.5	0.0	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
PaaX	PF07848.7	gi|146304036|ref|YP_001191352.1|	-	0.033	14.1	0.1	0.72	9.8	0.0	2.7	2	0	0	2	2	2	0	PaaX-like	protein
PK_C	PF02887.11	gi|146304036|ref|YP_001191352.1|	-	0.044	13.3	0.1	0.55	9.7	0.0	2.2	1	1	0	1	1	1	0	Pyruvate	kinase,	alpha/beta	domain
TFIIE_alpha	PF02002.12	gi|146304036|ref|YP_001191352.1|	-	0.049	13.1	0.0	0.18	11.3	0.0	1.9	2	0	0	2	2	2	0	TFIIE	alpha	subunit
GntR	PF00392.16	gi|146304036|ref|YP_001191352.1|	-	0.065	12.6	0.0	0.28	10.6	0.0	2.1	2	0	0	2	2	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_36	PF13730.1	gi|146304036|ref|YP_001191352.1|	-	0.077	13.1	0.0	0.22	11.6	0.0	1.8	2	0	0	2	2	1	0	Helix-turn-helix	domain
MerR	PF00376.18	gi|146304036|ref|YP_001191352.1|	-	0.078	12.5	0.0	0.21	11.1	0.0	1.7	1	0	0	1	1	1	0	MerR	family	regulatory	protein
HTH_12	PF08461.5	gi|146304036|ref|YP_001191352.1|	-	0.094	12.4	0.1	0.31	10.7	0.0	2.0	1	1	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
DUF4423	PF14394.1	gi|146304036|ref|YP_001191352.1|	-	0.098	12.1	0.0	0.19	11.2	0.0	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Sulfolobus_pRN	PF05584.6	gi|146304036|ref|YP_001191352.1|	-	0.11	12.4	0.1	0.23	11.4	0.1	1.5	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
FeoC	PF09012.5	gi|146304036|ref|YP_001191352.1|	-	0.14	11.9	0.0	0.26	11.0	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
AA_permease_2	PF13520.1	gi|146304037|ref|YP_001191353.1|	-	1.7e-27	96.0	52.1	1.7e-27	96.0	36.1	1.3	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146304037|ref|YP_001191353.1|	-	4e-06	25.4	47.2	5.7e-06	24.9	32.7	1.2	1	0	0	1	1	1	1	Amino	acid	permease
Ald_Xan_dh_C2	PF02738.13	gi|146304038|ref|YP_001191354.1|	-	2.4e-97	326.5	0.1	3.1e-76	256.8	0.0	2.1	1	1	1	2	2	2	2	Molybdopterin-binding	domain	of	aldehyde	dehydrogenase
Ald_Xan_dh_C	PF01315.17	gi|146304038|ref|YP_001191354.1|	-	1.8e-09	37.6	0.0	4.7e-09	36.3	0.0	1.8	1	0	0	1	1	1	1	Aldehyde	oxidase	and	xanthine	dehydrogenase,	a/b	hammerhead	domain
SLAC1	PF03595.12	gi|146304039|ref|YP_001191355.1|	-	3e-51	174.0	34.4	3.4e-51	173.8	23.9	1.0	1	0	0	1	1	1	1	Voltage-dependent	anion	channel
DUF302	PF03625.9	gi|146304040|ref|YP_001191356.1|	-	3.3e-18	64.9	0.0	4.5e-18	64.5	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF302
Fer4_9	PF13187.1	gi|146304042|ref|YP_001191358.1|	-	4.4e-05	23.6	13.6	0.00019	21.6	8.6	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304042|ref|YP_001191358.1|	-	0.00023	20.9	2.4	0.00023	20.9	1.7	1.8	2	0	0	2	2	1	1	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146304042|ref|YP_001191358.1|	-	0.00028	20.3	2.4	0.00028	20.3	1.7	2.1	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146304042|ref|YP_001191358.1|	-	0.0019	17.9	11.0	0.0042	16.8	7.7	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304042|ref|YP_001191358.1|	-	0.0056	17.0	3.1	0.0056	17.0	2.1	2.5	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146304042|ref|YP_001191358.1|	-	0.026	15.0	7.0	0.026	15.0	4.8	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146304042|ref|YP_001191358.1|	-	0.065	13.1	14.6	0.07	13.0	2.9	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146304042|ref|YP_001191358.1|	-	0.082	13.6	7.9	0.085	13.6	0.9	2.4	2	0	0	2	2	2	0	4Fe-4S	double	cluster	binding	domain
Fer4_11	PF13247.1	gi|146304042|ref|YP_001191358.1|	-	0.19	11.6	6.9	0.34	10.8	4.8	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146304042|ref|YP_001191358.1|	-	0.23	11.3	14.1	1.2	9.0	9.8	2.0	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304042|ref|YP_001191358.1|	-	0.27	11.6	18.0	0.054	13.8	3.1	2.4	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146304042|ref|YP_001191358.1|	-	1	9.4	17.0	0.79	9.7	9.7	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146304042|ref|YP_001191358.1|	-	7.3	7.2	14.9	0.17	12.3	3.0	2.4	2	0	0	2	2	2	0	4Fe-4S	binding	domain
SpoIIE	PF07228.7	gi|146304043|ref|YP_001191359.1|	-	0.0032	17.1	1.8	2.7	7.6	0.0	4.4	3	1	3	6	6	6	1	Stage	II	sporulation	protein	E	(SpoIIE)
TMEM154	PF15102.1	gi|146304043|ref|YP_001191359.1|	-	0.063	12.9	3.0	0.11	12.1	2.1	1.4	1	0	0	1	1	1	0	TMEM154	protein	family
DUF3242	PF11586.3	gi|146304043|ref|YP_001191359.1|	-	0.1	12.1	5.4	12	5.4	0.0	3.9	3	2	2	5	5	5	0	Protein	of	unknown	function	(DUF3242)
DUF1180	PF06679.7	gi|146304043|ref|YP_001191359.1|	-	0.15	11.9	2.6	0.25	11.2	1.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
DUF1517	PF07466.6	gi|146304043|ref|YP_001191359.1|	-	0.7	8.8	3.8	1.6	7.6	2.6	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1517)
DUF2147	PF09917.4	gi|146304043|ref|YP_001191359.1|	-	1.9	8.7	6.9	36	4.6	0.0	4.6	4	1	2	6	6	6	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2147)
HEPN	PF05168.9	gi|146304044|ref|YP_001191360.1|	-	3.2e-27	94.7	4.2	4.5e-27	94.2	2.9	1.2	1	0	0	1	1	1	1	HEPN	domain
PXA	PF02194.10	gi|146304044|ref|YP_001191360.1|	-	0.018	14.5	1.0	0.074	12.6	0.2	2.0	1	1	1	2	2	2	0	PXA	domain
MIT	PF04212.13	gi|146304044|ref|YP_001191360.1|	-	0.025	14.4	0.1	0.048	13.5	0.1	1.5	1	0	0	1	1	1	0	MIT	(microtubule	interacting	and	transport)	domain
DUF4398	PF14346.1	gi|146304044|ref|YP_001191360.1|	-	0.083	12.9	0.2	0.18	11.8	0.0	1.6	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4398)
XhlA	PF10779.4	gi|146304044|ref|YP_001191360.1|	-	0.71	9.8	4.2	1.1	9.1	2.5	1.8	1	1	1	2	2	2	0	Haemolysin	XhlA
Syntaxin-6_N	PF09177.6	gi|146304044|ref|YP_001191360.1|	-	0.78	10.1	4.7	5.1	7.5	0.1	2.5	2	1	1	3	3	3	0	Syntaxin	6,	N-terminal
NTP_transf_2	PF01909.18	gi|146304045|ref|YP_001191361.1|	-	1.7e-10	41.1	0.1	2.1e-10	40.7	0.1	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
MarR	PF01047.17	gi|146304046|ref|YP_001191362.1|	-	2.9e-11	42.9	0.2	8.4e-11	41.4	0.1	1.9	1	1	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|146304046|ref|YP_001191362.1|	-	8.3e-11	41.4	0.1	1.6e-10	40.4	0.1	1.6	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|146304046|ref|YP_001191362.1|	-	5.6e-08	32.9	0.1	1.1e-07	32.0	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_34	PF13601.1	gi|146304046|ref|YP_001191362.1|	-	3.3e-05	23.8	0.1	5.4e-05	23.1	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|146304046|ref|YP_001191362.1|	-	7.6e-05	22.0	0.0	7.6e-05	22.0	0.0	2.9	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|146304046|ref|YP_001191362.1|	-	0.0042	16.7	3.6	0.0067	16.1	0.3	2.6	1	1	2	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
Tautomerase_2	PF14552.1	gi|146304046|ref|YP_001191362.1|	-	0.013	15.4	0.3	0.029	14.3	0.2	1.6	1	0	0	1	1	1	0	Tautomerase	enzyme
BTAD	PF03704.12	gi|146304046|ref|YP_001191362.1|	-	0.014	15.6	0.8	0.024	14.9	0.1	1.7	2	0	0	2	2	2	0	Bacterial	transcriptional	activator	domain
Peptidase_A25	PF03418.9	gi|146304046|ref|YP_001191362.1|	-	0.014	14.1	1.8	0.018	13.7	1.3	1.1	1	0	0	1	1	1	0	Germination	protease
Penicillinase_R	PF03965.11	gi|146304046|ref|YP_001191362.1|	-	0.021	14.8	0.5	0.053	13.6	0.3	1.7	1	1	0	1	1	1	0	Penicillinase	repressor
GntR	PF00392.16	gi|146304046|ref|YP_001191362.1|	-	0.064	12.6	0.8	0.22	10.9	0.0	2.2	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HxlR	PF01638.12	gi|146304046|ref|YP_001191362.1|	-	0.1	12.2	0.5	0.18	11.4	0.2	1.5	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
DUF3782	PF12644.2	gi|146304046|ref|YP_001191362.1|	-	0.34	10.7	2.3	0.52	10.1	1.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3782)
MFS_1	PF07690.11	gi|146304047|ref|YP_001191363.1|	-	1.6e-37	129.0	65.5	1.6e-37	129.0	45.4	3.8	1	1	1	2	2	2	1	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146304047|ref|YP_001191363.1|	-	5.5e-06	25.2	44.6	2.9e-05	22.8	9.4	3.4	3	1	1	4	4	4	2	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|146304047|ref|YP_001191363.1|	-	0.0018	16.4	3.9	0.0018	16.4	2.7	2.4	2	0	0	2	2	2	1	Transmembrane	secretion	effector
DUF2583	PF10762.4	gi|146304047|ref|YP_001191363.1|	-	1.5	9.0	7.8	0.52	10.4	0.1	3.7	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2583)
Asp_Glu_race	PF01177.17	gi|146304049|ref|YP_001191365.1|	-	0.0056	16.6	0.0	0.0064	16.4	0.0	1.1	1	0	0	1	1	1	1	Asp/Glu/Hydantoin	racemase
Baculo_19	PF04798.7	gi|146304049|ref|YP_001191365.1|	-	0.12	11.7	0.0	0.12	11.7	0.0	1.1	1	0	0	1	1	1	0	Baculovirus	19	kDa	protein	conserved	region
2-Hacid_dh_C	PF02826.14	gi|146304050|ref|YP_001191366.1|	-	3e-33	114.4	0.0	4.1e-33	114.0	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|146304050|ref|YP_001191366.1|	-	2.7e-14	52.7	0.0	3.1e-14	52.5	0.0	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_10	PF13460.1	gi|146304050|ref|YP_001191366.1|	-	0.014	15.3	0.0	0.028	14.4	0.0	1.5	1	0	0	1	1	1	0	NADH(P)-binding
F420_oxidored	PF03807.12	gi|146304050|ref|YP_001191366.1|	-	0.054	13.9	0.0	0.36	11.2	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
Radical_SAM	PF04055.16	gi|146304051|ref|YP_001191367.1|	-	8.5e-20	71.5	0.0	3.2e-18	66.4	0.0	2.2	2	0	0	2	2	2	1	Radical	SAM	superfamily
B12-binding	PF02310.14	gi|146304051|ref|YP_001191367.1|	-	0.00013	21.7	0.0	0.00026	20.8	0.0	1.5	1	0	0	1	1	1	1	B12	binding	domain
DLH	PF01738.13	gi|146304052|ref|YP_001191368.1|	-	7.1e-57	192.1	0.0	4.4e-56	189.6	0.0	1.8	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Abhydrolase_5	PF12695.2	gi|146304052|ref|YP_001191368.1|	-	2e-08	34.1	0.0	3.8e-08	33.1	0.0	1.4	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_6	PF12697.2	gi|146304052|ref|YP_001191368.1|	-	1.7e-07	31.3	0.0	0.0041	17.0	0.0	2.1	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
BAAT_C	PF08840.6	gi|146304052|ref|YP_001191368.1|	-	0.00082	19.1	0.1	0.47	10.1	0.0	2.5	1	1	2	3	3	3	2	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Abhydrolase_1	PF00561.15	gi|146304052|ref|YP_001191368.1|	-	0.015	14.8	0.0	0.039	13.5	0.0	1.7	2	0	0	2	2	2	0	alpha/beta	hydrolase	fold
TrmB	PF01978.14	gi|146304052|ref|YP_001191368.1|	-	0.08	12.6	0.0	0.22	11.2	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
ABC_tran	PF00005.22	gi|146304053|ref|YP_001191369.1|	-	1.7e-34	119.0	0.0	2.5e-34	118.4	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304053|ref|YP_001191369.1|	-	6e-07	29.7	0.0	0.0018	18.3	0.0	2.2	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146304053|ref|YP_001191369.1|	-	0.00038	19.7	0.1	0.00096	18.4	0.1	1.6	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
DUF258	PF03193.11	gi|146304053|ref|YP_001191369.1|	-	0.0006	19.0	0.0	0.0015	17.7	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_16	PF13191.1	gi|146304053|ref|YP_001191369.1|	-	0.0013	18.7	0.0	0.0063	16.5	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_15	PF13175.1	gi|146304053|ref|YP_001191369.1|	-	0.0034	16.5	0.0	0.49	9.3	0.0	2.4	1	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146304053|ref|YP_001191369.1|	-	0.0076	15.7	0.0	0.015	14.8	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|146304053|ref|YP_001191369.1|	-	0.014	14.7	0.0	0.19	11.0	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
TOBE_2	PF08402.5	gi|146304053|ref|YP_001191369.1|	-	0.015	15.2	0.0	0.039	13.9	0.0	1.7	1	0	0	1	1	1	0	TOBE	domain
Arch_ATPase	PF01637.13	gi|146304053|ref|YP_001191369.1|	-	0.056	13.1	0.0	0.092	12.4	0.0	1.5	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_23	PF13476.1	gi|146304053|ref|YP_001191369.1|	-	0.061	13.6	0.3	0.31	11.3	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
BPD_transp_1	PF00528.17	gi|146304054|ref|YP_001191370.1|	-	4.6e-17	62.1	17.7	4.6e-17	62.1	12.3	2.0	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|146304055|ref|YP_001191371.1|	-	3.2e-14	52.8	19.0	5.7e-14	52.0	13.2	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
YqzM	PF14141.1	gi|146304055|ref|YP_001191371.1|	-	1.1	9.0	5.0	0.99	9.2	0.2	2.8	2	0	0	2	2	2	0	YqzM-like	protein
SBP_bac_1	PF01547.20	gi|146304056|ref|YP_001191372.1|	-	6.1e-25	88.6	0.3	1e-24	87.8	0.2	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.1	gi|146304056|ref|YP_001191372.1|	-	3.8e-20	72.7	0.3	7.1e-20	71.8	0.1	1.4	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	protein
Shisa	PF13908.1	gi|146304056|ref|YP_001191372.1|	-	0.0088	16.2	0.8	0.019	15.1	0.5	1.5	1	0	0	1	1	1	1	Wnt	and	FGF	inhibitory	regulator
SBP_bac_11	PF13531.1	gi|146304056|ref|YP_001191372.1|	-	0.053	13.1	0.0	6.8	6.2	0.0	2.6	3	0	0	3	3	3	0	Bacterial	extracellular	solute-binding	protein
Thiolase_C	PF02803.13	gi|146304057|ref|YP_001191373.1|	-	0.00011	21.6	0.1	0.00023	20.5	0.1	1.5	1	0	0	1	1	1	1	Thiolase,	C-terminal	domain
Thiolase_N	PF00108.18	gi|146304057|ref|YP_001191373.1|	-	0.00034	19.6	0.1	0.0011	18.0	0.0	1.9	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|146304057|ref|YP_001191373.1|	-	0.0011	18.5	0.1	0.0056	16.3	0.1	2.1	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
AMP-binding	PF00501.23	gi|146304058|ref|YP_001191374.1|	-	1.3e-76	257.6	0.0	1.7e-76	257.3	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146304058|ref|YP_001191374.1|	-	9e-17	61.7	1.0	2.2e-16	60.5	0.7	1.7	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
SGL	PF08450.7	gi|146304059|ref|YP_001191375.1|	-	2.2e-57	194.2	0.0	2.5e-57	194.0	0.0	1.0	1	0	0	1	1	1	1	SMP-30/Gluconolaconase/LRE-like	region
Reg_prop	PF07494.6	gi|146304059|ref|YP_001191375.1|	-	0.089	12.8	0.1	22	5.4	0.0	2.8	2	0	0	2	2	2	0	Two	component	regulator	propeller
HSP20	PF00011.16	gi|146304060|ref|YP_001191376.1|	-	2.8e-12	46.3	0.1	3.5e-12	46.0	0.0	1.1	1	0	0	1	1	1	1	Hsp20/alpha	crystallin	family
ABC1	PF03109.11	gi|146304061|ref|YP_001191377.1|	-	7e-26	90.5	0.0	1.5e-25	89.4	0.0	1.5	1	0	0	1	1	1	1	ABC1	family
RIO1	PF01163.17	gi|146304061|ref|YP_001191377.1|	-	3.2e-08	33.1	0.1	1.6e-06	27.6	0.0	2.8	3	0	0	3	3	3	1	RIO1	family
APH	PF01636.18	gi|146304061|ref|YP_001191377.1|	-	0.00012	21.9	0.5	0.0018	18.0	0.1	2.4	3	0	0	3	3	3	1	Phosphotransferase	enzyme	family
Pkinase	PF00069.20	gi|146304061|ref|YP_001191377.1|	-	0.0031	16.7	0.0	0.0057	15.8	0.0	1.4	1	0	0	1	1	1	1	Protein	kinase	domain
DHDPS	PF00701.17	gi|146304062|ref|YP_001191378.1|	-	1.6e-41	141.8	0.0	1.8e-41	141.6	0.0	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
PfkB	PF00294.19	gi|146304063|ref|YP_001191379.1|	-	1.9e-40	138.8	0.0	2.4e-40	138.5	0.0	1.0	1	0	0	1	1	1	1	pfkB	family	carbohydrate	kinase
Aldedh	PF00171.17	gi|146304064|ref|YP_001191380.1|	-	5.4e-111	371.1	0.0	6.2e-111	370.9	0.0	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Polyketide_cyc2	PF10604.4	gi|146304065|ref|YP_001191381.1|	-	0.015	15.4	0.0	0.026	14.6	0.0	1.4	1	0	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
DUF3211	PF11485.3	gi|146304065|ref|YP_001191381.1|	-	0.023	14.7	0.6	0.036	14.0	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3211)
Peptidase_S9	PF00326.16	gi|146304066|ref|YP_001191382.1|	-	2.1e-43	148.0	0.0	3.3e-43	147.4	0.0	1.2	1	0	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_5	PF12695.2	gi|146304066|ref|YP_001191382.1|	-	2.8e-05	23.9	0.0	4.9e-05	23.1	0.0	1.5	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
ADH_N	PF08240.7	gi|146304067|ref|YP_001191383.1|	-	2.4e-17	62.6	0.0	3.8e-17	62.0	0.0	1.3	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
DapB_N	PF01113.15	gi|146304067|ref|YP_001191383.1|	-	0.00021	21.2	0.0	0.00067	19.5	0.0	1.9	2	0	0	2	2	2	1	Dihydrodipicolinate	reductase,	N-terminus
ADH_zinc_N	PF00107.21	gi|146304067|ref|YP_001191383.1|	-	0.0012	18.3	0.0	0.0042	16.6	0.0	1.9	1	1	0	1	1	1	1	Zinc-binding	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|146304067|ref|YP_001191383.1|	-	0.0019	17.3	0.0	0.0029	16.7	0.0	1.2	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Pyr_redox	PF00070.22	gi|146304067|ref|YP_001191383.1|	-	0.051	13.9	0.0	0.17	12.3	0.0	1.9	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146304067|ref|YP_001191383.1|	-	0.062	12.3	0.0	0.11	11.5	0.0	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146304067|ref|YP_001191383.1|	-	0.073	12.9	0.0	0.11	12.3	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
AdoHcyase_NAD	PF00670.16	gi|146304067|ref|YP_001191383.1|	-	0.091	12.5	0.0	0.14	12.0	0.0	1.4	1	0	0	1	1	1	0	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
Shikimate_DH	PF01488.15	gi|146304067|ref|YP_001191383.1|	-	0.13	12.3	0.0	0.36	10.9	0.0	1.8	1	1	0	1	1	1	0	Shikimate	/	quinate	5-dehydrogenase
Radical_SAM	PF04055.16	gi|146304068|ref|YP_001191384.1|	-	4.7e-16	59.4	0.1	2.2e-15	57.1	0.1	2.0	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146304068|ref|YP_001191384.1|	-	1.9e-08	34.3	0.0	5.5e-08	32.8	0.0	1.8	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|146304068|ref|YP_001191384.1|	-	1.5e-07	31.6	0.1	4.7e-07	30.0	0.0	1.9	1	1	0	1	1	1	1	4Fe-4S	single	cluster	domain
TBPIP_N	PF15517.1	gi|146304068|ref|YP_001191384.1|	-	0.011	15.3	0.0	0.021	14.4	0.0	1.5	1	0	0	1	1	1	0	TBP-interacting	protein	N-terminus
MR_MLE_C	PF13378.1	gi|146304069|ref|YP_001191385.1|	-	1e-24	86.6	0.0	1.7e-24	85.8	0.0	1.4	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.11	gi|146304069|ref|YP_001191385.1|	-	3.2e-15	56.1	0.0	7.4e-15	54.9	0.0	1.6	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
MR_MLE	PF01188.16	gi|146304069|ref|YP_001191385.1|	-	5.1e-15	55.7	0.1	1.1e-13	51.4	0.0	2.5	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	C-terminal	domain
PIG-L	PF02585.12	gi|146304070|ref|YP_001191386.1|	-	2e-31	109.1	0.1	2.7e-31	108.7	0.0	1.2	1	0	0	1	1	1	1	GlcNAc-PI	de-N-acetylase
NicO	PF03824.11	gi|146304071|ref|YP_001191387.1|	-	1.6e-77	260.6	13.0	2.2e-77	260.1	9.0	1.2	1	0	0	1	1	1	1	High-affinity	nickel-transport	protein
Glycos_transf_1	PF00534.15	gi|146304072|ref|YP_001191388.1|	-	3.2e-16	59.2	0.0	6.1e-16	58.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304072|ref|YP_001191388.1|	-	6.3e-12	45.7	0.0	3.4e-11	43.4	0.0	2.0	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146304072|ref|YP_001191388.1|	-	0.016	15.4	0.0	0.049	13.9	0.0	1.8	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
PIN	PF01850.16	gi|146304073|ref|YP_001191389.1|	-	4.7e-17	62.4	0.0	5.3e-17	62.2	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
Antitoxin-MazE	PF04014.13	gi|146304074|ref|YP_001191390.1|	-	1.8e-09	37.0	0.7	2.6e-09	36.5	0.5	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
GATase	PF00117.23	gi|146304075|ref|YP_001191391.1|	-	3e-17	62.6	0.0	4.1e-17	62.2	0.0	1.1	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146304075|ref|YP_001191391.1|	-	1.3e-06	28.0	0.2	2.6e-06	27.0	0.0	1.6	2	0	0	2	2	2	1	Peptidase	C26
GATase_3	PF07685.9	gi|146304075|ref|YP_001191391.1|	-	0.0065	16.0	0.2	0.0097	15.5	0.1	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
HTS	PF04204.11	gi|146304075|ref|YP_001191391.1|	-	0.031	13.0	0.0	0.044	12.5	0.0	1.1	1	0	0	1	1	1	0	Homoserine	O-succinyltransferase
Cyclase	PF04199.8	gi|146304076|ref|YP_001191392.1|	-	3.3e-34	118.0	0.0	4.1e-34	117.7	0.0	1.1	1	0	0	1	1	1	1	Putative	cyclase
OsmC	PF02566.14	gi|146304077|ref|YP_001191393.1|	-	9e-12	45.0	0.0	1.8e-11	44.1	0.0	1.5	1	0	0	1	1	1	1	OsmC-like	protein
AA_permease	PF00324.16	gi|146304078|ref|YP_001191394.1|	-	4.1e-30	104.5	54.0	5.6e-30	104.1	37.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.1	gi|146304078|ref|YP_001191394.1|	-	1.2e-24	86.6	58.8	1.8e-24	86.0	40.8	1.2	1	0	0	1	1	1	1	Amino	acid	permease
AhpC-TSA	PF00578.16	gi|146304080|ref|YP_001191396.1|	-	2.4e-39	133.8	0.0	2.9e-39	133.5	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146304080|ref|YP_001191396.1|	-	1.6e-22	79.6	0.0	1.8e-22	79.4	0.0	1.0	1	0	0	1	1	1	1	Redoxin
DUF899	PF05988.7	gi|146304080|ref|YP_001191396.1|	-	0.019	14.4	0.0	0.02	14.3	0.0	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF899)
Thioredoxin_8	PF13905.1	gi|146304080|ref|YP_001191396.1|	-	0.028	14.5	0.0	0.045	13.8	0.0	1.3	1	0	0	1	1	1	0	Thioredoxin-like
DUF2012	PF09430.5	gi|146304081|ref|YP_001191397.1|	-	0.0031	17.3	0.0	0.0046	16.8	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2012)
Molybdopterin	PF00384.17	gi|146304084|ref|YP_001191400.1|	-	1.6e-84	284.1	0.0	2e-84	283.8	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|146304084|ref|YP_001191400.1|	-	2.1e-22	79.0	0.0	4.2e-22	78.0	0.0	1.5	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|146304084|ref|YP_001191400.1|	-	5.6e-19	67.6	0.6	5.6e-19	67.6	0.4	2.3	2	0	0	2	2	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
Fer2_4	PF13510.1	gi|146304084|ref|YP_001191400.1|	-	1e-16	60.5	0.1	2.8e-16	59.1	0.1	1.8	1	0	0	1	1	1	1	2Fe-2S	iron-sulfur	cluster	binding	domain
NADH-G_4Fe-4S_3	PF10588.4	gi|146304084|ref|YP_001191400.1|	-	6e-11	41.3	0.8	6e-11	41.3	0.6	2.1	2	0	0	2	2	1	1	NADH-ubiquinone	oxidoreductase-G	iron-sulfur	binding	region
Fer4	PF00037.22	gi|146304084|ref|YP_001191400.1|	-	2.5e-10	39.5	19.5	3.7e-06	26.3	2.4	3.5	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146304084|ref|YP_001191400.1|	-	4.4e-08	33.3	7.4	4.4e-08	33.3	5.1	3.5	3	0	0	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146304084|ref|YP_001191400.1|	-	5.8e-08	32.4	6.1	5.8e-08	32.4	4.3	2.5	3	0	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304084|ref|YP_001191400.1|	-	3.5e-07	29.8	18.4	0.00027	20.6	2.1	3.1	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146304084|ref|YP_001191400.1|	-	4.2e-06	26.9	10.6	4.2e-06	26.9	7.3	3.6	2	1	1	3	3	3	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304084|ref|YP_001191400.1|	-	8.4e-06	25.4	11.7	8.4e-06	25.4	8.1	3.4	2	2	2	4	4	3	2	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146304084|ref|YP_001191400.1|	-	1.3e-05	25.0	9.4	1.3e-05	25.0	6.5	2.9	1	1	2	3	3	3	2	4Fe-4S	dicluster	domain
Fer2	PF00111.22	gi|146304084|ref|YP_001191400.1|	-	2.4e-05	23.9	0.2	2.4e-05	23.9	0.1	2.7	2	0	0	2	2	2	1	2Fe-2S	iron-sulfur	cluster	binding	domain
Fer4_2	PF12797.2	gi|146304084|ref|YP_001191400.1|	-	7.6e-05	22.4	11.4	0.0011	18.7	1.7	3.3	4	0	0	4	4	2	2	4Fe-4S	binding	domain
Fer4_16	PF13484.1	gi|146304084|ref|YP_001191400.1|	-	0.00029	21.5	15.9	0.0013	19.3	1.9	3.7	3	1	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
TPP_enzyme_M	PF00205.17	gi|146304084|ref|YP_001191400.1|	-	0.00076	19.2	0.2	0.27	10.9	0.0	3.2	3	0	0	3	3	3	1	Thiamine	pyrophosphate	enzyme,	central	domain
Fer4_18	PF13746.1	gi|146304084|ref|YP_001191400.1|	-	0.0019	18.6	0.8	0.0019	18.6	0.5	3.3	3	1	0	3	3	2	1	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|146304084|ref|YP_001191400.1|	-	0.0032	17.9	5.8	0.27	11.8	1.2	2.9	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_17	PF13534.1	gi|146304084|ref|YP_001191400.1|	-	0.013	15.8	16.9	0.13	12.5	2.3	3.1	2	2	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_13	PF13370.1	gi|146304084|ref|YP_001191400.1|	-	0.41	11.0	11.4	3.9	7.9	1.5	2.7	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_3	PF12798.2	gi|146304084|ref|YP_001191400.1|	-	4.1	8.1	34.4	0.057	14.0	5.4	3.5	4	0	0	4	4	2	0	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304084|ref|YP_001191400.1|	-	9.5	6.8	27.6	0.031	14.6	1.8	3.5	4	0	0	4	4	2	0	4Fe-4S	binding	domain
DUF1641	PF07849.6	gi|146304085|ref|YP_001191401.1|	-	1.8e-13	49.8	0.2	3.9e-13	48.7	0.1	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
Baculo_PEP_C	PF04513.7	gi|146304085|ref|YP_001191401.1|	-	0.24	11.2	3.9	0.47	10.2	2.7	1.5	1	1	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
FdhD-NarQ	PF02634.10	gi|146304086|ref|YP_001191402.1|	-	1.6e-71	240.4	0.0	1.8e-71	240.3	0.0	1.0	1	0	0	1	1	1	1	FdhD/NarQ	family
HpaB_N	PF11794.3	gi|146304087|ref|YP_001191403.1|	-	9e-91	303.9	0.2	1.7e-90	303.0	0.1	1.5	2	0	0	2	2	2	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|146304087|ref|YP_001191403.1|	-	2.1e-64	216.1	0.1	3.2e-64	215.5	0.1	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
Phytoreo_P8	PF07124.6	gi|146304087|ref|YP_001191403.1|	-	0.11	11.1	0.0	0.19	10.3	0.0	1.3	1	0	0	1	1	1	0	Phytoreovirus	outer	capsid	protein	P8
Glyco_hydro_15	PF00723.16	gi|146304088|ref|YP_001191404.1|	-	1.1e-46	159.2	0.0	1.6e-44	152.2	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	15
TPR_4	PF07721.9	gi|146304088|ref|YP_001191404.1|	-	0.00083	19.5	1.0	0.0066	16.7	0.1	2.5	2	0	0	2	2	2	1	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|146304088|ref|YP_001191404.1|	-	0.011	16.3	0.2	0.12	13.0	0.0	2.4	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|146304088|ref|YP_001191404.1|	-	0.039	14.2	0.0	0.12	12.6	0.0	1.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|146304088|ref|YP_001191404.1|	-	0.064	13.7	0.2	0.31	11.5	0.0	2.2	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|146304088|ref|YP_001191404.1|	-	0.11	12.3	0.0	1.1	9.3	0.0	2.3	2	0	0	2	2	2	0	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|146304088|ref|YP_001191404.1|	-	0.13	12.0	0.0	0.57	10.1	0.0	2.1	1	0	0	1	1	1	0	Tetratricopeptide	repeat
TPR_10	PF13374.1	gi|146304088|ref|YP_001191404.1|	-	0.17	11.8	0.1	0.82	9.6	0.0	2.2	3	0	0	3	3	3	0	Tetratricopeptide	repeat
Pyr_redox_2	PF07992.9	gi|146304089|ref|YP_001191405.1|	-	1e-12	48.3	0.0	1.7e-12	47.6	0.0	1.4	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146304089|ref|YP_001191405.1|	-	2.8e-06	26.4	0.1	0.076	11.9	0.0	2.9	2	1	1	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox	PF00070.22	gi|146304089|ref|YP_001191405.1|	-	5.5e-05	23.5	0.2	0.024	15.0	0.0	2.8	2	1	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304089|ref|YP_001191405.1|	-	0.0025	17.7	0.0	0.0061	16.5	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
NAD_binding_9	PF13454.1	gi|146304089|ref|YP_001191405.1|	-	0.019	14.7	0.1	12	5.6	0.0	2.8	3	0	0	3	3	3	0	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.1	gi|146304089|ref|YP_001191405.1|	-	0.034	14.2	0.0	4.3	7.3	0.0	2.4	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Trp_halogenase	PF04820.9	gi|146304089|ref|YP_001191405.1|	-	0.091	11.3	0.5	0.29	9.7	0.0	2.0	2	1	1	3	3	3	0	Tryptophan	halogenase
T2SF	PF00482.18	gi|146304090|ref|YP_001191406.1|	-	0.00019	21.3	10.8	0.00022	21.1	0.0	3.6	3	0	0	3	3	3	2	Type	II	secretion	system	(T2SS),	protein	F
T2SE	PF00437.15	gi|146304091|ref|YP_001191407.1|	-	2.2e-47	161.2	0.0	3.2e-47	160.7	0.0	1.2	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_29	PF13555.1	gi|146304091|ref|YP_001191407.1|	-	0.0051	16.3	0.0	0.012	15.0	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
ABC_tran	PF00005.22	gi|146304091|ref|YP_001191407.1|	-	0.023	14.9	0.0	0.083	13.1	0.0	1.9	2	0	0	2	2	2	0	ABC	transporter
FtsK_SpoIIIE	PF01580.13	gi|146304091|ref|YP_001191407.1|	-	0.029	13.8	0.3	0.069	12.6	0.0	1.7	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
DEAD	PF00270.24	gi|146304091|ref|YP_001191407.1|	-	0.09	12.2	0.0	0.24	10.8	0.0	1.7	2	0	0	2	2	2	0	DEAD/DEAH	box	helicase
3H	PF02829.9	gi|146304091|ref|YP_001191407.1|	-	0.13	12.2	0.2	0.49	10.4	0.0	2.0	2	0	0	2	2	2	0	3H	domain
AAA_22	PF13401.1	gi|146304091|ref|YP_001191407.1|	-	0.13	12.3	0.0	0.32	11.1	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
AAA_23	PF13476.1	gi|146304091|ref|YP_001191407.1|	-	0.42	10.9	3.8	0.64	10.3	0.1	2.5	3	0	0	3	3	3	0	AAA	domain
KaiC	PF06745.8	gi|146304092|ref|YP_001191408.1|	-	1.2e-15	57.2	0.0	1.6e-15	56.8	0.0	1.1	1	0	0	1	1	1	1	KaiC
DUF835	PF05763.7	gi|146304092|ref|YP_001191408.1|	-	0.0043	16.5	0.1	0.0085	15.6	0.1	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF835)
DUF2075	PF09848.4	gi|146304092|ref|YP_001191408.1|	-	0.018	14.0	0.1	0.023	13.6	0.0	1.1	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.10	gi|146304092|ref|YP_001191408.1|	-	0.091	12.4	0.5	0.25	11.0	0.0	1.9	2	0	0	2	2	2	0	NTPase
Gpi16	PF04113.9	gi|146304093|ref|YP_001191409.1|	-	0.0073	14.3	0.3	0.011	13.8	0.2	1.2	1	0	0	1	1	1	1	Gpi16	subunit,	GPI	transamidase	component
Arch_flagellin	PF01917.11	gi|146304094|ref|YP_001191410.1|	-	1.3e-08	34.7	8.9	2e-07	30.8	6.2	1.9	1	1	0	1	1	1	1	Archaebacterial	flagellin
CARDB	PF07705.6	gi|146304094|ref|YP_001191410.1|	-	0.0093	16.0	0.5	0.024	14.6	0.3	1.7	1	1	0	1	1	1	1	CARDB
SF-assemblin	PF06705.6	gi|146304095|ref|YP_001191411.1|	-	0.019	14.1	1.3	0.02	14.0	0.2	1.4	2	0	0	2	2	2	0	SF-assemblin/beta	giardin
Syntaxin-6_N	PF09177.6	gi|146304095|ref|YP_001191411.1|	-	0.019	15.3	0.8	0.045	14.1	0.5	1.7	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Reo_sigmaC	PF04582.7	gi|146304095|ref|YP_001191411.1|	-	0.057	12.5	2.0	0.083	12.0	1.4	1.3	1	0	0	1	1	1	0	Reovirus	sigma	C	capsid	protein
DUF2250	PF10007.4	gi|146304095|ref|YP_001191411.1|	-	0.074	12.9	0.3	0.29	11.0	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Arch_flagellin	PF01917.11	gi|146304096|ref|YP_001191412.1|	-	1.3e-16	60.8	8.3	7.3e-16	58.3	5.6	2.1	1	1	0	1	1	1	1	Archaebacterial	flagellin
CbiA	PF01656.18	gi|146304100|ref|YP_001191416.1|	-	1.6e-10	40.6	0.2	2.5e-10	40.1	0.1	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|146304100|ref|YP_001191416.1|	-	0.00068	18.8	0.0	0.0014	17.7	0.0	1.5	1	1	0	1	1	1	1	ATPase	MipZ
AAA_14	PF13173.1	gi|146304100|ref|YP_001191416.1|	-	0.0019	18.1	1.4	0.02	14.7	0.8	2.3	1	1	0	1	1	1	1	AAA	domain
AAA_26	PF13500.1	gi|146304100|ref|YP_001191416.1|	-	0.043	13.4	0.9	0.72	9.4	0.1	2.0	2	0	0	2	2	2	0	AAA	domain
RHH_1	PF01402.16	gi|146304101|ref|YP_001191417.1|	-	8.2e-07	28.6	0.7	1.8e-06	27.6	0.1	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|146304101|ref|YP_001191417.1|	-	0.00013	21.6	0.9	0.00027	20.6	0.6	1.6	1	0	0	1	1	1	1	Ribbon-helix-helix	domain
TraY	PF05509.6	gi|146304101|ref|YP_001191417.1|	-	0.083	12.6	0.2	0.18	11.5	0.2	1.6	1	0	0	1	1	1	0	TraY	domain
Tmpp129	PF10272.4	gi|146304101|ref|YP_001191417.1|	-	0.17	10.5	1.2	0.2	10.3	0.8	1.0	1	0	0	1	1	1	0	Putative	transmembrane	protein	precursor
DUF2101	PF09874.4	gi|146304102|ref|YP_001191418.1|	-	0.013	15.0	3.1	0.014	14.8	2.1	1.1	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2101)
CbiA	PF01656.18	gi|146304103|ref|YP_001191419.1|	-	1.4e-17	63.7	0.0	1.7e-17	63.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146304103|ref|YP_001191419.1|	-	1.1e-06	28.6	0.0	1.7e-06	28.0	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304103|ref|YP_001191419.1|	-	0.00024	20.2	0.0	0.00048	19.2	0.0	1.5	2	0	0	2	2	2	1	Anion-transporting	ATPase
AAA_18	PF13238.1	gi|146304103|ref|YP_001191419.1|	-	0.01	16.1	0.0	0.033	14.5	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
MipZ	PF09140.6	gi|146304103|ref|YP_001191419.1|	-	0.012	14.7	0.0	0.018	14.0	0.0	1.3	1	0	0	1	1	1	0	ATPase	MipZ
AAA_5	PF07728.9	gi|146304103|ref|YP_001191419.1|	-	0.017	14.8	0.0	0.032	13.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_17	PF13207.1	gi|146304103|ref|YP_001191419.1|	-	0.086	13.6	0.2	0.12	13.2	0.1	1.6	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|146304103|ref|YP_001191419.1|	-	0.16	11.7	0.1	0.4	10.3	0.1	1.7	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
HTH_24	PF13412.1	gi|146304104|ref|YP_001191420.1|	-	3.9e-08	32.5	0.4	6.7e-05	22.1	0.1	2.6	2	0	0	2	2	2	2	Winged	helix-turn-helix	DNA-binding
TrmB	PF01978.14	gi|146304104|ref|YP_001191420.1|	-	2.8e-07	30.1	0.2	0.00023	20.8	0.0	2.3	2	0	0	2	2	2	2	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146304104|ref|YP_001191420.1|	-	1.1e-06	28.9	0.0	4.7e-05	23.6	0.0	2.4	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|146304104|ref|YP_001191420.1|	-	1.7e-06	27.5	0.0	0.00035	20.1	0.0	2.5	2	0	0	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|146304104|ref|YP_001191420.1|	-	2.6e-06	26.9	0.2	0.00035	20.1	0.0	2.5	2	0	0	2	2	2	1	HTH	domain
HTH_45	PF14947.1	gi|146304104|ref|YP_001191420.1|	-	6.2e-06	25.9	1.0	0.024	14.4	0.1	2.8	2	1	0	2	2	2	2	Winged	helix-turn-helix
HxlR	PF01638.12	gi|146304104|ref|YP_001191420.1|	-	6.7e-06	25.6	0.2	0.015	14.9	0.0	2.4	2	0	0	2	2	2	2	HxlR-like	helix-turn-helix
HTH_5	PF01022.15	gi|146304104|ref|YP_001191420.1|	-	1e-05	25.1	0.0	0.0071	15.9	0.0	2.5	2	0	0	2	2	2	2	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.17	gi|146304104|ref|YP_001191420.1|	-	5.5e-05	22.7	0.0	0.00049	19.7	0.0	2.3	2	0	0	2	2	2	1	MarR	family
HTH_10	PF04967.7	gi|146304104|ref|YP_001191420.1|	-	0.0032	17.0	0.9	0.37	10.3	0.0	2.6	3	0	0	3	3	3	1	HTH	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|146304104|ref|YP_001191420.1|	-	0.0032	16.9	0.0	0.4	10.2	0.0	2.5	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146304104|ref|YP_001191420.1|	-	0.0046	16.7	0.0	1.2	8.9	0.0	2.6	2	0	0	2	2	2	1	Helix-turn-helix	domain
FeoC	PF09012.5	gi|146304104|ref|YP_001191420.1|	-	0.0049	16.5	0.0	2.1	8.1	0.0	2.3	2	0	0	2	2	2	1	FeoC	like	transcriptional	regulator
Fe_dep_repress	PF01325.14	gi|146304104|ref|YP_001191420.1|	-	0.012	15.5	0.2	1.7	8.6	0.0	2.6	2	0	0	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_9	PF08221.6	gi|146304104|ref|YP_001191420.1|	-	0.023	14.5	0.1	1.3	8.9	0.0	2.6	2	0	0	2	2	2	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_28	PF13518.1	gi|146304104|ref|YP_001191420.1|	-	0.023	14.6	0.0	0.16	12.0	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_36	PF13730.1	gi|146304104|ref|YP_001191420.1|	-	0.033	14.2	0.6	5.2	7.2	0.0	2.7	2	0	0	2	2	2	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|146304104|ref|YP_001191420.1|	-	0.036	14.1	0.4	0.55	10.3	0.0	2.6	3	0	0	3	3	3	0	Transcriptional	regulator
Mrr_N	PF14338.1	gi|146304104|ref|YP_001191420.1|	-	0.045	13.8	0.2	3.2	7.9	0.0	2.7	3	0	0	3	3	3	0	Mrr	N-terminal	domain
MerR	PF00376.18	gi|146304104|ref|YP_001191420.1|	-	0.049	13.1	0.1	0.82	9.2	0.0	2.6	2	1	0	2	2	2	0	MerR	family	regulatory	protein
HTH_7	PF02796.10	gi|146304104|ref|YP_001191420.1|	-	0.054	13.3	0.2	3.8	7.4	0.0	3.0	2	1	1	3	3	3	0	Helix-turn-helix	domain	of	resolvase
HTH_Tnp_ISL3	PF13542.1	gi|146304104|ref|YP_001191420.1|	-	0.058	12.5	0.0	1.4	8.1	0.0	2.5	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	transposase	family	ISL3
NUMOD1	PF07453.8	gi|146304104|ref|YP_001191420.1|	-	0.064	13.1	1.4	0.24	11.2	0.0	2.6	2	0	0	2	2	2	0	NUMOD1	domain
HTH_23	PF13384.1	gi|146304104|ref|YP_001191420.1|	-	0.12	12.0	0.0	0.48	10.1	0.0	1.9	2	0	0	2	2	2	0	Homeodomain-like	domain
TetR_N	PF00440.18	gi|146304104|ref|YP_001191420.1|	-	0.13	11.9	0.0	10	5.8	0.0	2.6	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	tetR	family
Nucleoporin_N	PF08801.6	gi|146304105|ref|YP_001191421.1|	-	0.075	11.7	0.4	0.13	11.0	0.3	1.3	1	0	0	1	1	1	0	Nup133	N	terminal	like
BsuPI	PF12690.2	gi|146304105|ref|YP_001191421.1|	-	0.12	12.1	0.0	0.65	9.7	0.0	1.9	2	0	0	2	2	2	0	Intracellular	proteinase	inhibitor
SprB	PF13573.1	gi|146304105|ref|YP_001191421.1|	-	0.85	9.2	4.3	0.8	9.3	0.5	2.4	2	0	0	2	2	2	0	SprB	repeat
Bax1-I	PF01027.15	gi|146304106|ref|YP_001191422.1|	-	0.013	15.0	2.6	0.014	14.9	1.8	1.0	1	0	0	1	1	1	0	Inhibitor	of	apoptosis-promoting	Bax1
SdpI	PF13630.1	gi|146304106|ref|YP_001191422.1|	-	0.063	12.9	1.6	0.086	12.5	1.1	1.1	1	0	0	1	1	1	0	SdpI/YhfL	protein	family
CoA_binding_3	PF13727.1	gi|146304106|ref|YP_001191422.1|	-	0.23	11.2	1.3	0.26	11.1	0.9	1.1	1	0	0	1	1	1	0	CoA-binding	domain
CbiA	PF01656.18	gi|146304107|ref|YP_001191423.1|	-	4.8e-07	29.3	0.0	6.2e-07	29.0	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146304107|ref|YP_001191423.1|	-	1.7e-06	28.0	0.0	3.1e-06	27.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304107|ref|YP_001191423.1|	-	0.00033	19.8	0.2	0.00058	18.9	0.1	1.4	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146304107|ref|YP_001191423.1|	-	0.005	15.9	0.0	0.0085	15.1	0.0	1.3	1	0	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|146304107|ref|YP_001191423.1|	-	0.036	13.4	0.0	0.046	13.0	0.0	1.3	1	0	0	1	1	1	0	YhjQ	protein
APS_kinase	PF01583.15	gi|146304107|ref|YP_001191423.1|	-	0.057	13.0	0.0	0.11	12.1	0.0	1.4	1	0	0	1	1	1	0	Adenylylsulphate	kinase
Fer4_NifH	PF00142.13	gi|146304107|ref|YP_001191423.1|	-	0.084	12.0	0.1	0.11	11.6	0.1	1.2	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
CbiA	PF01656.18	gi|146304108|ref|YP_001191424.1|	-	3.3e-11	42.9	0.0	4.8e-11	42.4	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146304108|ref|YP_001191424.1|	-	1.9e-06	27.9	0.0	4e-06	26.8	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304108|ref|YP_001191424.1|	-	3.5e-05	23.0	0.0	5e-05	22.4	0.0	1.4	1	1	0	1	1	1	1	Anion-transporting	ATPase
CbiA	PF01656.18	gi|146304109|ref|YP_001191425.1|	-	3e-09	36.5	0.0	3.3e-09	36.4	0.0	1.1	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146304109|ref|YP_001191425.1|	-	3.1e-06	27.2	0.0	3.9e-06	26.8	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304109|ref|YP_001191425.1|	-	1.7e-05	24.0	0.1	2.1e-05	23.7	0.0	1.1	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146304109|ref|YP_001191425.1|	-	0.00028	20.0	0.0	0.00033	19.8	0.0	1.1	1	0	0	1	1	1	1	ATPase	MipZ
YhjQ	PF06564.7	gi|146304109|ref|YP_001191425.1|	-	0.0097	15.2	0.1	0.012	14.9	0.0	1.1	1	0	0	1	1	1	1	YhjQ	protein
Fer4_NifH	PF00142.13	gi|146304109|ref|YP_001191425.1|	-	0.028	13.6	0.0	0.028	13.5	0.0	1.1	1	0	0	1	1	1	0	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
4HBT_2	PF13279.1	gi|146304111|ref|YP_001191427.1|	-	2.1e-07	31.4	0.1	3.1e-07	30.8	0.1	1.3	1	0	0	1	1	1	1	Thioesterase-like	superfamily
4HBT	PF03061.17	gi|146304111|ref|YP_001191427.1|	-	0.00013	22.0	0.0	0.00018	21.5	0.0	1.3	1	0	0	1	1	1	1	Thioesterase	superfamily
MFS_1	PF07690.11	gi|146304112|ref|YP_001191428.1|	-	4e-29	101.4	57.8	3.3e-22	78.6	20.1	2.1	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
HTH_CodY	PF08222.6	gi|146304112|ref|YP_001191428.1|	-	0.065	12.5	0.4	1.9	7.8	0.1	2.6	2	0	0	2	2	2	0	CodY	helix-turn-helix	domain
NTP_transf_2	PF01909.18	gi|146304113|ref|YP_001191429.1|	-	4.9e-09	36.4	0.1	6e-09	36.1	0.0	1.2	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
DUF294	PF03445.8	gi|146304113|ref|YP_001191429.1|	-	0.037	13.6	0.0	0.054	13.0	0.0	1.5	1	1	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HEPN	PF05168.9	gi|146304114|ref|YP_001191430.1|	-	8.7e-28	96.5	0.2	9.5e-28	96.4	0.1	1.0	1	0	0	1	1	1	1	HEPN	domain
MIase	PF02426.11	gi|146304116|ref|YP_001191432.1|	-	6.7e-08	32.2	0.0	7.5e-08	32.0	0.0	1.1	1	0	0	1	1	1	1	Muconolactone	delta-isomerase
TENA_THI-4	PF03070.11	gi|146304117|ref|YP_001191433.1|	-	4.2e-40	137.7	0.2	4.9e-40	137.5	0.1	1.0	1	0	0	1	1	1	1	TENA/THI-4/PQQC	family
Sec3-PIP2_bind	PF15277.1	gi|146304117|ref|YP_001191433.1|	-	0.035	13.9	0.4	0.17	11.7	0.1	2.0	2	0	0	2	2	2	0	Exocyst	complex	component	SEC3	N-terminal	PIP2	binding	PH
Grp1_Fun34_YaaH	PF01184.14	gi|146304118|ref|YP_001191434.1|	-	6.4e-50	169.3	26.9	8.1e-50	169.0	18.7	1.1	1	0	0	1	1	1	1	GPR1/FUN34/yaaH	family
AMP-binding	PF00501.23	gi|146304119|ref|YP_001191435.1|	-	9.5e-89	297.6	0.0	1.4e-88	297.0	0.0	1.3	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146304119|ref|YP_001191435.1|	-	6.1e-23	81.5	0.7	1.7e-22	80.1	0.5	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Hex_IIIa	PF02455.11	gi|146304119|ref|YP_001191435.1|	-	0.043	12.5	0.0	0.062	11.9	0.0	1.2	1	0	0	1	1	1	0	Hexon-associated	protein	(IIIa)
ResIII	PF04851.10	gi|146304120|ref|YP_001191436.1|	-	2.5e-18	66.5	0.0	5.6e-17	62.1	0.0	2.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|146304120|ref|YP_001191436.1|	-	3.2e-17	62.1	0.0	8.1e-17	60.8	0.0	1.7	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|146304120|ref|YP_001191436.1|	-	1.3e-11	44.2	0.0	4.1e-10	39.4	0.0	2.8	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_26	PF13500.1	gi|146304120|ref|YP_001191436.1|	-	0.0034	17.0	0.0	0.0084	15.7	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
Flavi_DEAD	PF07652.9	gi|146304120|ref|YP_001191436.1|	-	0.004	16.9	0.7	0.25	11.0	0.0	3.1	3	1	0	3	3	3	1	Flavivirus	DEAD	domain
T2SE	PF00437.15	gi|146304120|ref|YP_001191436.1|	-	0.0046	15.9	0.0	0.01	14.7	0.0	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_19	PF13245.1	gi|146304120|ref|YP_001191436.1|	-	0.0059	16.3	0.0	0.03	14.0	0.0	2.1	2	0	0	2	2	2	1	Part	of	AAA	domain
CbiA	PF01656.18	gi|146304120|ref|YP_001191436.1|	-	0.0087	15.4	0.0	0.12	11.7	0.0	2.6	3	0	0	3	3	3	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Helicase_C_2	PF13307.1	gi|146304120|ref|YP_001191436.1|	-	0.0088	16.0	0.0	2.5	8.0	0.0	3.3	2	1	1	3	3	3	1	Helicase	C-terminal	domain
Thymidylate_kin	PF02223.12	gi|146304120|ref|YP_001191436.1|	-	0.023	14.0	0.1	4.2	6.7	0.0	2.4	2	0	0	2	2	2	0	Thymidylate	kinase
AAA_30	PF13604.1	gi|146304120|ref|YP_001191436.1|	-	0.035	13.6	0.0	0.11	12.0	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|146304120|ref|YP_001191436.1|	-	0.035	13.0	0.0	0.057	12.3	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
MobB	PF03205.9	gi|146304120|ref|YP_001191436.1|	-	0.087	12.5	0.4	32	4.2	0.0	3.7	4	1	1	5	5	5	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|146304120|ref|YP_001191436.1|	-	0.098	12.8	0.1	13	5.9	0.0	3.2	3	1	0	3	3	3	0	AAA	domain
AAA_11	PF13086.1	gi|146304120|ref|YP_001191436.1|	-	0.17	11.4	0.0	1.7	8.1	0.0	2.2	1	1	1	2	2	2	0	AAA	domain
MFS_1	PF07690.11	gi|146304121|ref|YP_001191437.1|	-	3.6e-11	42.3	42.3	3.6e-11	42.3	29.3	1.7	1	1	0	1	1	1	1	Major	Facilitator	Superfamily
FixP_N	PF14715.1	gi|146304121|ref|YP_001191437.1|	-	0.77	9.1	6.2	2.8	7.4	4.3	2.0	1	0	0	1	1	1	0	N-terminal	domain	of	cytochrome	oxidase-cbb3,	FixP
DUF2173	PF09941.4	gi|146304123|ref|YP_001191439.1|	-	7.9e-47	157.6	4.9	8.9e-47	157.5	3.4	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2173)
FAA_hydrolase	PF01557.13	gi|146304124|ref|YP_001191440.1|	-	3.5e-70	235.8	0.0	4.3e-70	235.5	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
MFS_1	PF07690.11	gi|146304125|ref|YP_001191441.1|	-	1.2e-19	70.3	23.4	2.5e-10	39.6	6.8	2.1	2	0	0	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146304125|ref|YP_001191441.1|	-	0.00064	18.4	4.1	0.00064	18.4	2.9	2.9	1	1	3	4	4	4	1	Sugar	(and	other)	transporter
MFS_3	PF05977.8	gi|146304125|ref|YP_001191441.1|	-	0.27	9.2	11.7	0.63	8.0	8.1	1.6	1	1	0	1	1	1	0	Transmembrane	secretion	effector
DUF422	PF04240.7	gi|146304126|ref|YP_001191442.1|	-	3.5e-22	78.8	18.7	2.1e-21	76.3	13.0	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF422)
DUF2299	PF10061.4	gi|146304127|ref|YP_001191443.1|	-	2e-37	127.7	0.0	2.4e-37	127.4	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
DUF2299	PF10061.4	gi|146304128|ref|YP_001191444.1|	-	1.5e-54	183.1	0.0	1.8e-54	182.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2299)
DAO	PF01266.19	gi|146304129|ref|YP_001191445.1|	-	1.7e-12	46.9	2.9	2.1e-11	43.3	2.0	2.2	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.19	gi|146304129|ref|YP_001191445.1|	-	4e-11	42.6	0.0	0.0002	20.6	0.0	2.8	3	0	0	3	3	3	2	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304129|ref|YP_001191445.1|	-	5.1e-10	39.2	0.4	6.2e-09	35.7	0.2	2.5	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox	PF00070.22	gi|146304129|ref|YP_001191445.1|	-	3.7e-08	33.6	0.7	0.0004	20.7	0.1	2.5	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|146304129|ref|YP_001191445.1|	-	8.9e-08	31.3	1.0	0.0026	16.7	0.4	2.1	2	0	0	2	2	2	2	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|146304129|ref|YP_001191445.1|	-	7.2e-07	29.4	0.0	0.00014	22.0	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146304129|ref|YP_001191445.1|	-	1.4e-05	23.8	0.6	0.026	12.9	0.1	2.1	2	0	0	2	2	2	2	HI0933-like	protein
Thi4	PF01946.12	gi|146304129|ref|YP_001191445.1|	-	0.00012	21.3	0.6	0.00052	19.1	0.0	2.0	2	0	0	2	2	2	1	Thi4	family
Pyr_redox_2	PF07992.9	gi|146304129|ref|YP_001191445.1|	-	0.003	17.4	0.0	0.012	15.5	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146304129|ref|YP_001191445.1|	-	0.01	14.9	0.2	0.018	14.0	0.1	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146304129|ref|YP_001191445.1|	-	0.011	14.8	0.3	0.018	14.1	0.0	1.4	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|146304129|ref|YP_001191445.1|	-	0.038	12.8	0.3	0.038	12.8	0.2	2.6	3	0	0	3	3	3	0	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.9	gi|146304129|ref|YP_001191445.1|	-	0.29	9.7	0.8	3.3	6.2	0.0	2.1	2	0	0	2	2	2	0	Tryptophan	halogenase
GATase	PF00117.23	gi|146304130|ref|YP_001191446.1|	-	3.3e-33	114.7	0.1	3.6e-33	114.6	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146304130|ref|YP_001191446.1|	-	6e-10	38.9	0.1	4.6e-09	36.0	0.0	2.2	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|146304130|ref|YP_001191446.1|	-	0.0071	15.9	0.0	3	7.4	0.0	2.1	2	0	0	2	2	2	2	SNO	glutamine	amidotransferase	family
HTS	PF04204.11	gi|146304130|ref|YP_001191446.1|	-	0.012	14.4	0.0	0.018	13.7	0.0	1.4	1	1	0	1	1	1	0	Homoserine	O-succinyltransferase
Y_phosphatase	PF00102.22	gi|146304131|ref|YP_001191447.1|	-	1.3e-13	50.9	0.0	1.3e-13	50.8	0.0	1.1	1	0	0	1	1	1	1	Protein-tyrosine	phosphatase
DSPc	PF00782.15	gi|146304131|ref|YP_001191447.1|	-	2.4e-10	40.0	0.0	4.3e-10	39.2	0.0	1.4	1	1	0	1	1	1	1	Dual	specificity	phosphatase,	catalytic	domain
CDKN3	PF05706.7	gi|146304131|ref|YP_001191447.1|	-	6.7e-06	25.6	0.0	8.5e-06	25.3	0.0	1.1	1	0	0	1	1	1	1	Cyclin-dependent	kinase	inhibitor	3	(CDKN3)
PTPlike_phytase	PF14566.1	gi|146304131|ref|YP_001191447.1|	-	6e-05	23.1	0.0	8.9e-05	22.5	0.0	1.3	1	1	0	1	1	1	1	Inositol	hexakisphosphate
Y_phosphatase3	PF13350.1	gi|146304131|ref|YP_001191447.1|	-	0.0012	19.1	0.0	0.0055	16.9	0.0	1.8	1	1	1	2	2	2	1	Tyrosine	phosphatase	family
JmjN	PF02375.12	gi|146304131|ref|YP_001191447.1|	-	0.15	11.6	0.5	1.1	8.8	0.0	2.3	2	0	0	2	2	2	0	jmjN	domain
Endonuclease_5	PF04493.9	gi|146304132|ref|YP_001191448.1|	-	1.3e-42	145.5	0.1	1.6e-42	145.1	0.1	1.1	1	0	0	1	1	1	1	Endonuclease	V
NurA	PF09376.5	gi|146304132|ref|YP_001191448.1|	-	0.07	12.5	0.1	3.2	7.1	0.0	2.2	1	1	0	2	2	2	0	NurA	domain
PNGaseA	PF12222.3	gi|146304134|ref|YP_001191450.1|	-	7.1e-141	469.9	11.4	9.4e-141	469.5	7.9	1.1	1	0	0	1	1	1	1	Peptide	N-acetyl-beta-D-glucosaminyl	asparaginase	amidase	A
Pro-kuma_activ	PF09286.6	gi|146304135|ref|YP_001191451.1|	-	4.1e-11	43.1	0.0	1.6e-10	41.1	0.0	2.0	1	0	0	1	1	1	1	Pro-kumamolisin,	activation	domain
Peptidase_S8	PF00082.17	gi|146304135|ref|YP_001191451.1|	-	4.5e-09	35.8	3.0	1.3e-08	34.3	2.1	1.7	1	0	0	1	1	1	1	Subtilase	family
A2M_N	PF01835.14	gi|146304135|ref|YP_001191451.1|	-	3.6e-05	23.9	0.4	0.96	9.7	0.0	4.8	5	0	0	5	5	5	1	MG2	domain
DUF824	PF05688.6	gi|146304135|ref|YP_001191451.1|	-	0.43	10.2	5.3	0.98	9.1	0.1	2.8	3	0	0	3	3	3	0	Salmonella	repeat	of	unknown	function	(DUF824)
PadR	PF03551.9	gi|146304137|ref|YP_001191453.1|	-	7.5e-15	54.4	0.0	3.3e-14	52.4	0.0	1.9	2	0	0	2	2	2	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.1	gi|146304137|ref|YP_001191453.1|	-	0.00019	21.1	0.3	0.0013	18.5	0.0	2.3	3	0	0	3	3	3	1	Winged	helix-turn-helix
MarR	PF01047.17	gi|146304137|ref|YP_001191453.1|	-	0.011	15.4	0.0	1.3	8.8	0.0	2.9	3	0	0	3	3	3	0	MarR	family
NETI	PF14044.1	gi|146304137|ref|YP_001191453.1|	-	0.022	14.2	0.5	0.048	13.1	0.4	1.5	1	0	0	1	1	1	0	NETI	protein
HTH_12	PF08461.5	gi|146304137|ref|YP_001191453.1|	-	0.026	14.2	0.1	0.083	12.6	0.1	1.9	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Copine	PF07002.11	gi|146304137|ref|YP_001191453.1|	-	0.028	14.1	0.0	0.63	9.7	0.0	2.0	1	1	1	2	2	2	0	Copine
DUF4364	PF14277.1	gi|146304137|ref|YP_001191453.1|	-	0.039	13.5	0.1	0.051	13.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Nitro_FeMo-Co	PF02579.12	gi|146304138|ref|YP_001191454.1|	-	7e-07	29.2	0.0	1.1e-06	28.6	0.0	1.3	1	0	0	1	1	1	1	Dinitrogenase	iron-molybdenum	cofactor
AA_permease	PF00324.16	gi|146304139|ref|YP_001191455.1|	-	9.3e-23	80.3	50.0	2.2e-22	79.0	34.6	1.7	1	1	0	1	1	1	1	Amino	acid	permease
AA_permease_2	PF13520.1	gi|146304139|ref|YP_001191455.1|	-	5.7e-15	54.7	55.5	2.4e-14	52.7	38.6	1.7	1	1	0	1	1	1	1	Amino	acid	permease
DEAD	PF00270.24	gi|146304140|ref|YP_001191456.1|	-	1.6e-27	96.0	0.0	1.1e-26	93.3	0.0	2.1	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
ResIII	PF04851.10	gi|146304140|ref|YP_001191456.1|	-	7.7e-12	45.4	0.0	2e-11	44.0	0.0	1.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|146304140|ref|YP_001191456.1|	-	3.5e-09	36.3	0.0	7.3e-09	35.3	0.0	1.5	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
HHH_5	PF14520.1	gi|146304140|ref|YP_001191456.1|	-	5.9e-06	26.3	1.7	4.9e-05	23.4	0.1	3.0	3	0	0	3	3	3	1	Helix-hairpin-helix	domain
AAA_19	PF13245.1	gi|146304140|ref|YP_001191456.1|	-	0.0013	18.4	0.1	0.0046	16.6	0.1	2.0	1	0	0	1	1	1	1	Part	of	AAA	domain
SNF2_N	PF00176.18	gi|146304140|ref|YP_001191456.1|	-	0.002	17.0	0.0	0.0035	16.2	0.0	1.3	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
KaiC	PF06745.8	gi|146304140|ref|YP_001191456.1|	-	0.013	14.6	0.0	0.027	13.5	0.0	1.4	1	0	0	1	1	1	0	KaiC
Carboxyl_trans	PF01039.17	gi|146304141|ref|YP_001191457.1|	-	4.1e-192	638.9	3.3	4.6e-192	638.7	2.3	1.0	1	0	0	1	1	1	1	Carboxyl	transferase	domain
MdcE	PF06833.6	gi|146304141|ref|YP_001191457.1|	-	0.00054	19.2	0.9	0.0013	17.9	0.1	1.9	2	0	0	2	2	2	1	Malonate	decarboxylase	gamma	subunit	(MdcE)
BPD_transp_1	PF00528.17	gi|146304142|ref|YP_001191458.1|	-	2.7e-21	75.9	43.2	3.1e-14	52.8	7.3	3.0	3	1	0	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
FtsL	PF04999.8	gi|146304142|ref|YP_001191458.1|	-	1.5	8.5	3.5	2.9	7.6	0.0	2.9	3	0	0	3	3	3	0	Cell	division	protein	FtsL
UPF0154	PF03672.8	gi|146304142|ref|YP_001191458.1|	-	3.2	7.4	6.8	1.2	8.8	0.0	3.1	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0154)
ABC_tran	PF00005.22	gi|146304143|ref|YP_001191459.1|	-	3.9e-21	75.7	0.0	6.4e-21	75.0	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304143|ref|YP_001191459.1|	-	8.5e-07	29.2	0.0	0.00011	22.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
DEAD	PF00270.24	gi|146304144|ref|YP_001191460.1|	-	6.6e-19	68.0	0.0	8.9e-17	61.0	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|146304144|ref|YP_001191460.1|	-	2.2e-12	46.6	0.0	4.7e-12	45.5	0.0	1.6	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
AAA_22	PF13401.1	gi|146304144|ref|YP_001191460.1|	-	0.00014	22.0	0.0	0.00048	20.2	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
ResIII	PF04851.10	gi|146304144|ref|YP_001191460.1|	-	0.00015	21.6	0.0	0.0022	17.8	0.0	2.4	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Rota_NSP3	PF01665.11	gi|146304144|ref|YP_001191460.1|	-	0.017	14.1	0.3	3.6	6.4	0.0	2.3	2	0	0	2	2	2	0	Rotavirus	non-structural	protein	NSP3
AAA_17	PF13207.1	gi|146304144|ref|YP_001191460.1|	-	0.017	15.9	0.0	0.19	12.5	0.0	2.7	2	0	0	2	2	2	0	AAA	domain
AAA_18	PF13238.1	gi|146304144|ref|YP_001191460.1|	-	0.034	14.4	0.1	0.26	11.5	0.0	2.5	3	0	0	3	3	3	0	AAA	domain
SNF2_N	PF00176.18	gi|146304144|ref|YP_001191460.1|	-	0.053	12.3	0.0	0.13	10.9	0.1	1.6	2	0	0	2	2	2	0	SNF2	family	N-terminal	domain
AAA_19	PF13245.1	gi|146304144|ref|YP_001191460.1|	-	0.13	12.0	0.1	2.5	7.9	0.0	2.7	3	0	0	3	3	3	0	Part	of	AAA	domain
oligo_HPY	PF08352.7	gi|146304145|ref|YP_001191461.1|	-	0.00065	20.0	0.0	0.0013	19.0	0.0	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
ABC_tran	PF00005.22	gi|146304146|ref|YP_001191462.1|	-	1.8e-08	34.7	0.0	3.2e-08	33.9	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146304146|ref|YP_001191462.1|	-	4.9e-07	30.0	1.4	2.1e-05	24.8	1.0	2.3	1	1	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
BPD_transp_1	PF00528.17	gi|146304148|ref|YP_001191464.1|	-	6.3e-19	68.2	10.4	6.3e-19	68.2	7.2	2.7	3	0	0	3	3	3	2	Binding-protein-dependent	transport	system	inner	membrane	component
DUF3430	PF11912.3	gi|146304148|ref|YP_001191464.1|	-	0.1	12.3	0.3	0.18	11.6	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3430)
VWA_2	PF13519.1	gi|146304149|ref|YP_001191465.1|	-	8.9e-19	68.2	0.0	2.8e-18	66.6	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|146304149|ref|YP_001191465.1|	-	3e-15	56.3	0.0	8.4e-15	54.9	0.0	1.7	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|146304149|ref|YP_001191465.1|	-	5.9e-15	55.2	0.0	3.5e-14	52.7	0.0	2.2	2	1	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|146304149|ref|YP_001191465.1|	-	2.3e-05	23.6	0.0	4.8e-05	22.5	0.0	1.4	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
DUF2201	PF09967.4	gi|146304149|ref|YP_001191465.1|	-	0.0016	18.4	0.0	0.0031	17.5	0.0	1.4	1	0	0	1	1	1	1	VWA-like	domain	(DUF2201)
vWA-TerF-like	PF10138.4	gi|146304149|ref|YP_001191465.1|	-	0.046	13.5	0.0	0.18	11.5	0.0	2.0	2	0	0	2	2	2	0	vWA	found	in	TerF	C	terminus
Polyketide_cyc2	PF10604.4	gi|146304150|ref|YP_001191466.1|	-	0.00099	19.2	0.0	0.0011	19.0	0.0	1.1	1	0	0	1	1	1	1	Polyketide	cyclase	/	dehydrase	and	lipid	transport
Polyketide_cyc	PF03364.15	gi|146304150|ref|YP_001191466.1|	-	0.07	13.1	0.1	0.084	12.8	0.1	1.3	1	1	0	1	1	1	0	Polyketide	cyclase	/	dehydrase	and	lipid	transport
PIN	PF01850.16	gi|146304151|ref|YP_001191467.1|	-	1.1e-11	45.0	0.1	1.5e-11	44.6	0.1	1.1	1	0	0	1	1	1	1	PIN	domain
RHH_1	PF01402.16	gi|146304152|ref|YP_001191468.1|	-	0.022	14.6	1.0	0.049	13.5	0.7	1.6	1	1	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
XdhC_C	PF13478.1	gi|146304153|ref|YP_001191469.1|	-	5.8e-19	68.7	0.0	7.5e-19	68.3	0.0	1.1	1	0	0	1	1	1	1	XdhC	Rossmann	domain
Crp	PF00325.15	gi|146304153|ref|YP_001191469.1|	-	0.095	12.1	0.0	0.26	10.7	0.0	1.8	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	crp	family
UPF0066	PF01980.11	gi|146304154|ref|YP_001191470.1|	-	1.1e-34	118.8	0.0	1.5e-34	118.5	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0066
PmbA_TldD	PF01523.11	gi|146304155|ref|YP_001191471.1|	-	8.5e-12	44.9	0.0	1.4e-11	44.2	0.0	1.3	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
BcrAD_BadFG	PF01869.15	gi|146304156|ref|YP_001191472.1|	-	1.3e-38	132.8	1.2	1.8e-38	132.4	0.9	1.2	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
Fumble	PF03630.9	gi|146304156|ref|YP_001191472.1|	-	0.001	18.0	0.0	0.0017	17.2	0.0	1.4	1	0	0	1	1	1	1	Fumble
Peptidase_M22	PF00814.20	gi|146304156|ref|YP_001191472.1|	-	0.019	14.4	0.0	0.029	13.8	0.0	1.3	1	0	0	1	1	1	0	Glycoprotease	family
B12-binding	PF02310.14	gi|146304156|ref|YP_001191472.1|	-	0.072	12.9	0.0	0.16	11.8	0.0	1.5	1	0	0	1	1	1	0	B12	binding	domain
dUTPase	PF00692.14	gi|146304157|ref|YP_001191473.1|	-	4.5e-12	45.5	0.0	9.7e-12	44.4	0.0	1.5	2	0	0	2	2	2	1	dUTPase
DCD	PF06559.6	gi|146304157|ref|YP_001191473.1|	-	0.014	13.8	0.0	0.03	12.7	0.0	1.7	1	1	0	1	1	1	0	2'-deoxycytidine	5'-triphosphate	deaminase	(DCD)
PsbQ	PF05757.6	gi|146304158|ref|YP_001191474.1|	-	0.037	13.4	0.1	0.05	13.0	0.1	1.2	1	0	0	1	1	1	0	Oxygen	evolving	enhancer	protein	3	(PsbQ)
Peptidase_M28	PF04389.12	gi|146304159|ref|YP_001191475.1|	-	2.6e-14	53.3	0.0	1.4e-13	50.9	0.0	1.9	1	1	0	1	1	1	1	Peptidase	family	M28
PMBR	PF09373.5	gi|146304160|ref|YP_001191476.1|	-	0.056	13.4	0.1	14	5.8	0.0	3.7	4	0	0	4	4	4	0	Pseudomurein-binding	repeat
NTP_transf_2	PF01909.18	gi|146304160|ref|YP_001191476.1|	-	0.064	13.5	0.1	0.12	12.7	0.1	1.4	1	0	0	1	1	1	0	Nucleotidyltransferase	domain
CRAL_TRIO_2	PF13716.1	gi|146304161|ref|YP_001191477.1|	-	0.021	14.7	0.1	0.024	14.5	0.0	1.2	1	0	0	1	1	1	0	Divergent	CRAL/TRIO	domain
YuiB	PF14068.1	gi|146304162|ref|YP_001191478.1|	-	0.031	14.5	5.6	0.038	14.2	3.9	1.2	1	0	0	1	1	1	0	Putative	membrane	protein
DUF1624	PF07786.7	gi|146304162|ref|YP_001191478.1|	-	0.039	13.2	3.6	0.047	13.0	2.5	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1624)
ECF-ribofla_trS	PF07155.7	gi|146304162|ref|YP_001191478.1|	-	0.045	13.4	9.2	0.055	13.2	6.4	1.0	1	0	0	1	1	1	0	ECF-type	riboflavin	transporter,	S	component
MtrC	PF04211.8	gi|146304162|ref|YP_001191478.1|	-	0.073	12.1	14.0	0.084	11.9	6.7	1.9	1	1	1	2	2	2	0	Tetrahydromethanopterin	S-methyltransferase,	subunit	C
DUF2784	PF10861.3	gi|146304162|ref|YP_001191478.1|	-	0.1	12.4	0.6	0.13	12.1	0.4	1.1	1	0	0	1	1	1	0	Protein	of	Unknown	function	(DUF2784)
DUF883	PF05957.8	gi|146304162|ref|YP_001191478.1|	-	0.1	12.9	0.6	11	6.5	0.2	2.2	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
FUN14	PF04930.10	gi|146304162|ref|YP_001191478.1|	-	0.12	12.6	10.6	2.3	8.5	7.4	2.1	1	1	0	1	1	1	0	FUN14	family
ATPase_gene1	PF09527.5	gi|146304162|ref|YP_001191478.1|	-	0.33	10.7	10.3	2.5	7.9	3.7	2.3	2	0	0	2	2	2	0	Putative	F0F1-ATPase	subunit	(ATPase_gene1)
DUF1761	PF08570.5	gi|146304162|ref|YP_001191478.1|	-	0.97	9.4	6.5	0.15	12.0	2.2	1.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1761)
DUF2798	PF11391.3	gi|146304162|ref|YP_001191478.1|	-	2.5	7.9	9.6	0.46	10.2	0.3	3.0	2	1	1	3	3	3	0	Protein	of	unknown	function	(DUF2798)
O-antigen_lig	PF13425.1	gi|146304162|ref|YP_001191478.1|	-	2.8	7.9	12.1	1.4	8.9	7.2	1.5	1	1	0	1	1	1	0	O-antigen	ligase	like	membrane	protein
Wzy_C	PF04932.10	gi|146304162|ref|YP_001191478.1|	-	2.9	7.6	12.2	3.8	7.2	8.4	1.3	1	1	0	1	1	1	0	O-Antigen	ligase
DUF2628	PF10947.3	gi|146304162|ref|YP_001191478.1|	-	4.9	6.9	5.8	8.1	6.2	4.0	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2628)
Oxidored_q2	PF00420.19	gi|146304162|ref|YP_001191478.1|	-	5.2	6.7	9.8	7.4	6.2	6.8	1.3	1	1	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
PIRT	PF15099.1	gi|146304162|ref|YP_001191478.1|	-	7.1	5.8	7.3	1.1	8.4	0.0	2.3	1	1	1	2	2	2	0	Phosphoinositide-interacting	protein	family
PrgI	PF12666.2	gi|146304162|ref|YP_001191478.1|	-	9.6	6.4	7.4	1.3	9.1	2.4	1.7	2	0	0	2	2	2	0	PrgI	family	protein
MarR_2	PF12802.2	gi|146304163|ref|YP_001191479.1|	-	8.3e-11	41.3	0.0	1.2e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.14	gi|146304163|ref|YP_001191479.1|	-	6.1e-10	38.6	0.7	9.9e-10	37.9	0.5	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|146304163|ref|YP_001191479.1|	-	1.2e-09	37.7	0.2	1.7e-09	37.2	0.1	1.3	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|146304163|ref|YP_001191479.1|	-	6.2e-09	35.3	0.7	8e-09	34.9	0.5	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|146304163|ref|YP_001191479.1|	-	5e-08	33.1	0.1	7.7e-08	32.5	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|146304163|ref|YP_001191479.1|	-	3.8e-05	23.5	0.0	6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_34	PF13601.1	gi|146304163|ref|YP_001191479.1|	-	0.00017	21.5	0.2	0.00033	20.6	0.1	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_5	PF01022.15	gi|146304163|ref|YP_001191479.1|	-	0.00018	21.1	0.2	0.00027	20.5	0.1	1.2	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TetR_N	PF00440.18	gi|146304163|ref|YP_001191479.1|	-	0.00031	20.3	0.1	0.14	11.8	0.0	2.2	2	0	0	2	2	2	1	Bacterial	regulatory	proteins,	tetR	family
HTH_20	PF12840.2	gi|146304163|ref|YP_001191479.1|	-	0.00057	19.6	0.0	0.00088	19.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|146304163|ref|YP_001191479.1|	-	0.00082	18.7	0.1	0.0019	17.6	0.0	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_24	PF13412.1	gi|146304163|ref|YP_001191479.1|	-	0.00082	18.7	0.1	0.0014	17.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_Crp_2	PF13545.1	gi|146304163|ref|YP_001191479.1|	-	0.0017	18.0	0.0	0.0074	16.0	0.0	2.0	2	1	1	3	3	3	1	Crp-like	helix-turn-helix	domain
RuvB_C	PF05491.8	gi|146304163|ref|YP_001191479.1|	-	0.0018	17.8	0.0	0.0028	17.2	0.0	1.3	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	C-terminus
HTH_DeoR	PF08220.7	gi|146304163|ref|YP_001191479.1|	-	0.0021	17.5	0.0	0.0041	16.6	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_11	PF08279.7	gi|146304163|ref|YP_001191479.1|	-	0.0035	16.9	0.1	0.0056	16.3	0.1	1.3	1	0	0	1	1	1	1	HTH	domain
Penicillinase_R	PF03965.11	gi|146304163|ref|YP_001191479.1|	-	0.0062	16.6	0.5	0.0097	15.9	0.3	1.4	1	1	0	1	1	1	1	Penicillinase	repressor
HTH_19	PF12844.2	gi|146304163|ref|YP_001191479.1|	-	0.011	15.8	0.1	0.016	15.2	0.1	1.4	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|146304163|ref|YP_001191479.1|	-	0.016	14.7	0.0	0.017	14.6	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Phage_pRha	PF09669.5	gi|146304163|ref|YP_001191479.1|	-	0.033	14.5	0.2	0.045	14.1	0.1	1.3	1	0	0	1	1	1	0	Phage	regulatory	protein	Rha	(Phage_pRha)
HTH_36	PF13730.1	gi|146304163|ref|YP_001191479.1|	-	0.049	13.7	0.1	0.076	13.1	0.1	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|146304163|ref|YP_001191479.1|	-	0.067	13.3	0.1	0.12	12.5	0.1	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_38	PF13936.1	gi|146304163|ref|YP_001191479.1|	-	0.072	12.6	0.0	0.16	11.5	0.0	1.6	2	0	0	2	2	1	0	Helix-turn-helix	domain
Glyco_hydro_42M	PF08532.5	gi|146304163|ref|YP_001191479.1|	-	0.092	11.8	0.0	0.11	11.6	0.0	1.1	1	0	0	1	1	1	0	Beta-galactosidase	trimerisation	domain
DUF3143	PF11341.3	gi|146304163|ref|YP_001191479.1|	-	0.095	12.5	0.0	0.21	11.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3143)
HTH_IclR	PF09339.5	gi|146304163|ref|YP_001191479.1|	-	0.11	12.0	0.0	0.16	11.6	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Succ_CoA_lig	PF13607.1	gi|146304165|ref|YP_001191481.1|	-	3.4e-45	153.0	0.0	6.9e-45	152.0	0.0	1.5	1	0	0	1	1	1	1	Succinyl-CoA	ligase	like	flavodoxin	domain
ATP-grasp_5	PF13549.1	gi|146304165|ref|YP_001191481.1|	-	1.1e-44	152.2	0.1	2.7e-44	151.0	0.1	1.7	1	0	0	1	1	1	1	ATP-grasp	domain
CoA_binding_2	PF13380.1	gi|146304165|ref|YP_001191481.1|	-	2.7e-26	91.9	0.1	1.5e-25	89.6	0.0	2.3	2	0	0	2	2	2	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|146304165|ref|YP_001191481.1|	-	1.4e-14	54.3	1.1	5.2e-14	52.5	0.2	2.6	3	0	0	3	3	3	1	CoA	binding	domain
ATP-grasp_2	PF08442.5	gi|146304165|ref|YP_001191481.1|	-	0.0018	17.7	0.1	0.12	11.7	0.0	2.9	3	0	0	3	3	3	1	ATP-grasp	domain
RimK	PF08443.6	gi|146304165|ref|YP_001191481.1|	-	0.0039	16.7	0.0	0.0097	15.4	0.0	1.7	1	0	0	1	1	1	1	RimK-like	ATP-grasp	domain
UBA_2	PF08587.6	gi|146304165|ref|YP_001191481.1|	-	0.017	15.2	0.0	0.076	13.2	0.0	2.1	1	0	0	1	1	1	0	Ubiquitin	associated	domain	(UBA)
ATP-grasp_4	PF13535.1	gi|146304165|ref|YP_001191481.1|	-	0.021	14.5	0.0	0.044	13.5	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
ATP-grasp	PF02222.17	gi|146304165|ref|YP_001191481.1|	-	0.044	13.1	0.2	0.22	10.8	0.0	2.3	4	0	0	4	4	4	0	ATP-grasp	domain
PALP	PF00291.20	gi|146304166|ref|YP_001191482.1|	-	2.5e-55	187.8	0.0	2.9e-55	187.6	0.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DFP	PF04127.10	gi|146304166|ref|YP_001191482.1|	-	0.0084	15.7	0.3	0.014	14.9	0.2	1.3	1	0	0	1	1	1	1	DNA	/	pantothenate	metabolism	flavoprotein
CbiA	PF01656.18	gi|146304167|ref|YP_001191483.1|	-	2.2e-12	46.7	0.0	3.5e-12	46.1	0.0	1.4	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|146304167|ref|YP_001191483.1|	-	5.3e-07	29.6	0.0	9.1e-07	28.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304167|ref|YP_001191483.1|	-	0.0012	17.9	0.0	0.0021	17.1	0.0	1.4	1	0	0	1	1	1	1	Anion-transporting	ATPase
MipZ	PF09140.6	gi|146304167|ref|YP_001191483.1|	-	0.0067	15.5	0.0	0.016	14.3	0.0	1.7	2	1	0	2	2	2	1	ATPase	MipZ
Ldh_1_N	PF00056.18	gi|146304167|ref|YP_001191483.1|	-	0.0099	15.7	0.0	0.019	14.7	0.0	1.5	1	0	0	1	1	1	1	lactate/malate	dehydrogenase,	NAD	binding	domain
AAA_18	PF13238.1	gi|146304167|ref|YP_001191483.1|	-	0.13	12.5	0.6	0.42	10.9	0.3	1.9	1	1	0	2	2	2	0	AAA	domain
Ribonuc_L-PSP	PF01042.16	gi|146304169|ref|YP_001191485.1|	-	7.1e-39	132.3	0.0	7.8e-39	132.1	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
FlpD	PF02662.11	gi|146304169|ref|YP_001191485.1|	-	0.13	11.9	0.0	0.19	11.4	0.0	1.2	1	0	0	1	1	1	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Creatininase	PF02633.9	gi|146304172|ref|YP_001191488.1|	-	5e-54	182.8	0.0	5.5e-54	182.7	0.0	1.0	1	0	0	1	1	1	1	Creatinine	amidohydrolase
GP38	PF05268.6	gi|146304172|ref|YP_001191488.1|	-	0.045	13.1	0.1	0.065	12.6	0.1	1.1	1	0	0	1	1	1	0	Phage	tail	fibre	adhesin	Gp38
DMRL_synthase	PF00885.14	gi|146304175|ref|YP_001191491.1|	-	0.011	15.4	0.3	0.016	14.8	0.2	1.4	1	0	0	1	1	1	0	6,7-dimethyl-8-ribityllumazine	synthase
Acetyltransf_1	PF00583.19	gi|146304177|ref|YP_001191493.1|	-	1.6e-12	47.2	0.0	3e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_3	PF13302.1	gi|146304177|ref|YP_001191493.1|	-	9.8e-12	45.2	0.0	1.3e-11	44.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|146304177|ref|YP_001191493.1|	-	7.1e-11	42.2	0.0	1.1e-10	41.6	0.0	1.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_10	PF13673.1	gi|146304177|ref|YP_001191493.1|	-	4.4e-09	36.4	0.0	5.3e-09	36.2	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|146304177|ref|YP_001191493.1|	-	2.8e-07	30.6	0.0	7.5e-07	29.2	0.0	1.7	1	1	1	2	2	2	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|146304177|ref|YP_001191493.1|	-	4.5e-06	26.3	0.0	8.3e-06	25.4	0.0	1.5	1	1	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|146304177|ref|YP_001191493.1|	-	7.1e-06	25.9	0.1	0.00053	19.8	0.1	2.3	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|146304177|ref|YP_001191493.1|	-	0.0028	17.5	0.0	0.0043	16.9	0.0	1.4	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|146304177|ref|YP_001191493.1|	-	0.092	12.6	0.0	0.17	11.8	0.0	1.4	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
PK	PF00224.16	gi|146304178|ref|YP_001191494.1|	-	1.2e-80	270.8	0.0	1.6e-80	270.3	0.0	1.1	1	0	0	1	1	1	1	Pyruvate	kinase,	barrel	domain
PK_C	PF02887.11	gi|146304178|ref|YP_001191494.1|	-	1.2e-21	76.4	0.0	2.6e-21	75.3	0.0	1.6	1	0	0	1	1	1	1	Pyruvate	kinase,	alpha/beta	domain
DUF1955	PF09205.5	gi|146304179|ref|YP_001191495.1|	-	5e-73	243.9	7.0	5.6e-73	243.7	4.9	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1955)
FokI_N	PF02981.10	gi|146304179|ref|YP_001191495.1|	-	0.018	14.6	0.0	0.029	14.0	0.0	1.5	1	0	0	1	1	1	0	Restriction	endonuclease	FokI,	recognition	domain
DUF4523	PF15023.1	gi|146304179|ref|YP_001191495.1|	-	0.028	13.9	0.1	0.037	13.5	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4523)
DAO	PF01266.19	gi|146304180|ref|YP_001191496.1|	-	1.7e-36	125.9	0.0	2.8e-36	125.1	0.0	1.4	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304180|ref|YP_001191496.1|	-	3.5e-07	30.1	0.0	1.1e-06	28.5	0.0	1.9	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|146304180|ref|YP_001191496.1|	-	8e-06	25.1	0.0	1e-05	24.7	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|146304180|ref|YP_001191496.1|	-	0.00022	21.5	1.0	0.00069	19.9	0.2	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
3HCDH_N	PF02737.13	gi|146304180|ref|YP_001191496.1|	-	0.00083	19.0	0.1	0.0014	18.3	0.0	1.4	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Pyr_redox_2	PF07992.9	gi|146304180|ref|YP_001191496.1|	-	0.00096	19.0	0.5	0.009	15.9	0.2	2.5	2	1	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|146304180|ref|YP_001191496.1|	-	0.0012	18.3	0.1	0.0019	17.5	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|146304180|ref|YP_001191496.1|	-	0.008	16.4	0.0	0.016	15.4	0.0	1.5	1	0	0	1	1	1	1	Putative	NAD(P)-binding
HI0933_like	PF03486.9	gi|146304180|ref|YP_001191496.1|	-	0.0093	14.4	0.3	0.024	13.1	0.1	1.7	2	0	0	2	2	2	1	HI0933-like	protein
NAD_binding_9	PF13454.1	gi|146304180|ref|YP_001191496.1|	-	0.017	14.8	0.3	0.66	9.7	0.1	2.7	3	0	0	3	3	3	0	FAD-NAD(P)-binding
FAD_binding_2	PF00890.19	gi|146304180|ref|YP_001191496.1|	-	0.021	13.7	0.6	0.037	12.8	0.4	1.3	1	0	0	1	1	1	0	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|146304180|ref|YP_001191496.1|	-	0.022	14.7	0.0	0.051	13.6	0.0	1.6	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
ApbA	PF02558.11	gi|146304180|ref|YP_001191496.1|	-	0.027	13.9	0.3	0.088	12.2	0.1	1.9	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
Thi4	PF01946.12	gi|146304180|ref|YP_001191496.1|	-	0.041	12.9	0.3	0.086	11.9	0.2	1.5	1	0	0	1	1	1	0	Thi4	family
GIDA	PF01134.17	gi|146304180|ref|YP_001191496.1|	-	0.11	11.2	0.1	0.2	10.4	0.0	1.4	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
Trp_halogenase	PF04820.9	gi|146304180|ref|YP_001191496.1|	-	0.14	10.7	0.4	0.22	10.1	0.3	1.3	1	0	0	1	1	1	0	Tryptophan	halogenase
HEAT	PF02985.17	gi|146304181|ref|YP_001191497.1|	-	0.0013	18.6	0.1	0.89	9.8	0.0	4.0	5	0	0	5	5	5	1	HEAT	repeat
Cnd1	PF12717.2	gi|146304181|ref|YP_001191497.1|	-	0.12	12.2	0.0	0.21	11.3	0.0	1.4	1	0	0	1	1	1	0	non-SMC	mitotic	condensation	complex	subunit	1
ThiS	PF02597.15	gi|146304182|ref|YP_001191498.1|	-	1.7e-06	28.3	0.2	2e-06	28.1	0.2	1.0	1	0	0	1	1	1	1	ThiS	family
Glycos_transf_1	PF00534.15	gi|146304183|ref|YP_001191499.1|	-	1.4e-29	102.7	0.0	2.3e-29	102.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.6	gi|146304183|ref|YP_001191499.1|	-	1.8e-27	96.4	0.0	2.6e-27	95.8	0.0	1.2	1	0	0	1	1	1	1	Starch	synthase	catalytic	domain
Glyco_trans_1_4	PF13692.1	gi|146304183|ref|YP_001191499.1|	-	6.8e-10	39.2	0.0	1.2e-09	38.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|146304183|ref|YP_001191499.1|	-	3.9e-08	33.6	0.1	1.7e-07	31.4	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|146304183|ref|YP_001191499.1|	-	0.0041	17.3	0.0	0.028	14.6	0.0	2.3	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|146304183|ref|YP_001191499.1|	-	0.017	14.8	0.2	5.7	6.6	0.1	2.5	2	0	0	2	2	2	0	Glycosyltransferase	Family	4
NTPase_P4	PF11602.3	gi|146304183|ref|YP_001191499.1|	-	0.059	12.3	0.0	0.11	11.5	0.0	1.3	1	0	0	1	1	1	0	ATPase	P4	of	dsRNA	bacteriophage	phi-12
Glyco_hydro_57	PF03065.10	gi|146304184|ref|YP_001191500.1|	-	2.4e-67	227.3	0.1	2e-66	224.3	0.1	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	57
Polysacc_deac_1	PF01522.16	gi|146304184|ref|YP_001191500.1|	-	0.096	12.3	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	Polysaccharide	deacetylase
NTP_transferase	PF00483.18	gi|146304185|ref|YP_001191501.1|	-	4.7e-38	130.8	0.0	6.2e-38	130.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
Hexapep	PF00132.19	gi|146304185|ref|YP_001191501.1|	-	1.1e-10	40.5	13.5	0.00075	18.8	0.1	4.6	1	1	3	4	4	4	3	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|146304185|ref|YP_001191501.1|	-	0.012	15.1	7.7	0.57	9.7	0.1	3.5	3	0	0	3	3	3	0	Hexapeptide	repeat	of	succinyl-transferase
NTP_transf_3	PF12804.2	gi|146304185|ref|YP_001191501.1|	-	0.1	12.6	0.0	0.17	11.9	0.0	1.5	1	0	0	1	1	1	0	MobA-like	NTP	transferase	domain
Glyco_hydro_15	PF00723.16	gi|146304186|ref|YP_001191502.1|	-	1e-14	53.9	0.1	2.1e-10	39.7	0.1	3.1	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	15
DUF608	PF04685.8	gi|146304186|ref|YP_001191502.1|	-	2e-05	23.5	0.1	3.8e-05	22.5	0.0	1.5	1	1	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Imm43	PF15602.1	gi|146304186|ref|YP_001191502.1|	-	0.04	13.8	0.0	0.098	12.6	0.0	1.6	1	0	0	1	1	1	0	Immunity	protein	43
GDE_C	PF06202.9	gi|146304187|ref|YP_001191503.1|	-	9.7e-113	376.6	0.0	1.3e-112	376.1	0.0	1.1	1	0	0	1	1	1	1	Amylo-alpha-1,6-glucosidase
GDE_N	PF12439.3	gi|146304187|ref|YP_001191503.1|	-	5.5e-47	159.8	0.3	8.1e-47	159.3	0.2	1.2	1	0	0	1	1	1	1	Glycogen	debranching	enzyme	N	terminal
DUF608	PF04685.8	gi|146304187|ref|YP_001191503.1|	-	2.2e-09	36.5	0.1	3.5e-09	35.8	0.1	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF608
Bac_rhamnosid	PF05592.6	gi|146304187|ref|YP_001191503.1|	-	1.8e-05	23.2	0.1	2.6e-05	22.6	0.0	1.1	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase
AMP-binding_C_2	PF14535.1	gi|146304188|ref|YP_001191504.1|	-	2.6e-16	59.4	0.0	4.7e-16	58.6	0.0	1.4	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
AMP-binding	PF00501.23	gi|146304188|ref|YP_001191504.1|	-	2.4e-06	26.2	0.0	4.3e-06	25.3	0.0	1.3	1	1	0	1	1	1	1	AMP-binding	enzyme
3HCDH_N	PF02737.13	gi|146304189|ref|YP_001191505.1|	-	2.1e-64	216.4	0.2	3.2e-64	215.8	0.1	1.2	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|146304189|ref|YP_001191505.1|	-	6e-47	158.0	0.0	3.7e-25	88.1	0.0	2.8	3	0	0	3	3	3	2	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146304189|ref|YP_001191505.1|	-	0.00015	21.5	0.0	0.00025	20.7	0.0	1.4	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Pyr_redox	PF00070.22	gi|146304189|ref|YP_001191505.1|	-	0.0015	18.8	0.1	0.0042	17.4	0.1	1.8	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_2	PF03446.10	gi|146304189|ref|YP_001191505.1|	-	0.0063	16.3	0.0	0.01	15.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Methyltransf_31	PF13847.1	gi|146304189|ref|YP_001191505.1|	-	0.0079	15.7	0.0	0.018	14.5	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
F420_oxidored	PF03807.12	gi|146304189|ref|YP_001191505.1|	-	0.016	15.5	0.3	0.04	14.3	0.2	1.7	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
DFP	PF04127.10	gi|146304189|ref|YP_001191505.1|	-	0.018	14.6	0.0	0.029	13.9	0.0	1.4	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
Pyr_redox_2	PF07992.9	gi|146304189|ref|YP_001191505.1|	-	0.032	14.0	0.0	0.053	13.4	0.0	1.4	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
2-Hacid_dh_C	PF02826.14	gi|146304189|ref|YP_001191505.1|	-	0.08	12.0	0.0	0.14	11.3	0.0	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_8	PF13450.1	gi|146304189|ref|YP_001191505.1|	-	0.095	12.7	0.0	0.32	11.0	0.0	1.9	2	0	0	2	2	2	0	NAD(P)-binding	Rossmann-like	domain
UDPG_MGDP_dh_N	PF03721.9	gi|146304189|ref|YP_001191505.1|	-	0.12	11.7	1.1	0.37	10.1	0.3	2.1	1	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ADH_N	PF08240.7	gi|146304190|ref|YP_001191506.1|	-	8.2e-32	109.2	1.0	2.1e-31	107.9	0.7	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146304190|ref|YP_001191506.1|	-	3.5e-30	104.2	0.4	5.8e-30	103.5	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146304190|ref|YP_001191506.1|	-	9.9e-06	26.4	0.1	5.2e-05	24.1	0.0	2.0	2	0	0	2	2	2	1	Zinc-binding	dehydrogenase
ThiF	PF00899.16	gi|146304190|ref|YP_001191506.1|	-	0.045	13.5	1.5	0.045	13.5	1.0	1.7	2	0	0	2	2	2	0	ThiF	family
HTH_7	PF02796.10	gi|146304190|ref|YP_001191506.1|	-	0.059	13.2	0.1	0.31	10.9	0.0	2.2	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
2-Hacid_dh_C	PF02826.14	gi|146304190|ref|YP_001191506.1|	-	0.074	12.1	0.2	0.13	11.4	0.1	1.4	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|146304190|ref|YP_001191506.1|	-	0.075	12.3	0.1	0.14	11.4	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_3	PF03447.11	gi|146304190|ref|YP_001191506.1|	-	0.14	12.5	0.7	0.28	11.5	0.5	1.5	1	0	0	1	1	1	0	Homoserine	dehydrogenase,	NAD	binding	domain
CBS	PF00571.23	gi|146304191|ref|YP_001191507.1|	-	2e-26	91.4	4.2	2.8e-13	49.3	0.5	2.1	2	0	0	2	2	2	2	CBS	domain
ADH_N	PF08240.7	gi|146304192|ref|YP_001191508.1|	-	8.2e-27	93.1	0.1	2.1e-26	91.8	0.0	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.21	gi|146304192|ref|YP_001191508.1|	-	9e-22	77.0	0.4	1.4e-21	76.3	0.3	1.3	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
ADH_zinc_N_2	PF13602.1	gi|146304192|ref|YP_001191508.1|	-	1.3e-13	51.9	0.1	3e-13	50.7	0.1	1.6	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
NAD_binding_10	PF13460.1	gi|146304192|ref|YP_001191508.1|	-	0.00075	19.5	0.6	0.0018	18.3	0.4	1.6	1	0	0	1	1	1	1	NADH(P)-binding
Eno-Rase_NADH_b	PF12242.3	gi|146304192|ref|YP_001191508.1|	-	0.0012	18.6	0.7	0.0028	17.4	0.5	1.6	1	0	0	1	1	1	1	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
E1-N	PF14463.1	gi|146304192|ref|YP_001191508.1|	-	0.0017	17.9	1.1	0.0039	16.7	0.6	1.7	1	1	0	1	1	1	1	E1	N-terminal	domain
AlaDh_PNT_C	PF01262.16	gi|146304192|ref|YP_001191508.1|	-	0.0025	17.4	0.4	0.0043	16.6	0.3	1.4	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
CMAS	PF02353.15	gi|146304192|ref|YP_001191508.1|	-	0.0058	15.7	0.1	0.0084	15.2	0.1	1.2	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
CPSase_L_chain	PF00289.17	gi|146304192|ref|YP_001191508.1|	-	0.014	15.4	0.0	0.036	14.1	0.0	1.7	2	0	0	2	2	1	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ELFV_dehydrog	PF00208.16	gi|146304192|ref|YP_001191508.1|	-	0.042	13.4	0.7	0.066	12.7	0.5	1.2	1	0	0	1	1	1	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Epimerase	PF01370.16	gi|146304192|ref|YP_001191508.1|	-	0.088	12.2	0.1	0.14	11.5	0.1	1.4	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
adh_short	PF00106.20	gi|146304192|ref|YP_001191508.1|	-	0.09	12.6	1.5	0.18	11.7	1.0	1.5	1	0	0	1	1	1	0	short	chain	dehydrogenase
Oxidored_q1	PF00361.15	gi|146304193|ref|YP_001191509.1|	-	9.5e-43	146.3	23.0	9.5e-43	146.3	16.0	3.1	2	1	1	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Complex1_49kDa	PF00346.14	gi|146304194|ref|YP_001191510.1|	-	3.2e-17	62.4	0.0	8.2e-16	57.8	0.0	2.3	1	1	1	2	2	2	2	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NiFeSe_Hases	PF00374.14	gi|146304194|ref|YP_001191510.1|	-	0.00012	20.9	0.0	0.0094	14.7	0.0	2.1	2	0	0	2	2	2	2	Nickel-dependent	hydrogenase
Oxidored_q6	PF01058.17	gi|146304195|ref|YP_001191511.1|	-	2.2e-18	66.1	0.1	9e-18	64.1	0.0	1.8	1	1	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
Fer4	PF00037.22	gi|146304195|ref|YP_001191511.1|	-	0.0017	17.8	7.2	0.025	14.1	0.4	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146304195|ref|YP_001191511.1|	-	0.046	13.6	2.9	0.26	11.3	0.3	2.7	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Cecropin	PF00272.14	gi|146304195|ref|YP_001191511.1|	-	0.047	13.2	0.3	0.22	11.0	0.0	2.0	2	0	0	2	2	2	0	Cecropin	family
Fer4_10	PF13237.1	gi|146304195|ref|YP_001191511.1|	-	0.062	13.1	1.5	0.19	11.5	0.3	2.2	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304195|ref|YP_001191511.1|	-	3.7	7.5	9.0	0.58	10.1	0.4	2.9	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Oxidored_q1	PF00361.15	gi|146304196|ref|YP_001191512.1|	-	1.3e-24	86.8	23.7	1.3e-24	86.8	16.4	3.1	3	1	0	3	3	3	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
TarH	PF02203.10	gi|146304196|ref|YP_001191512.1|	-	7.4	6.3	7.5	4	7.2	2.0	2.5	2	0	0	2	2	2	0	Tar	ligand	binding	domain	homologue
PAGK	PF15284.1	gi|146304198|ref|YP_001191514.1|	-	1.2	8.8	3.5	0.5	10.1	0.2	2.0	2	0	0	2	2	2	0	Phage-encoded	virulence	factor
Exo_endo_phos	PF03372.18	gi|146304199|ref|YP_001191515.1|	-	6e-23	82.0	0.0	7.1e-23	81.8	0.0	1.1	1	0	0	1	1	1	1	Endonuclease/Exonuclease/phosphatase	family
Exo_endo_phos_2	PF14529.1	gi|146304199|ref|YP_001191515.1|	-	1e-14	54.1	0.0	1.4e-14	53.7	0.0	1.2	1	0	0	1	1	1	1	Endonuclease-reverse	transcriptase
DUF766	PF05571.7	gi|146304200|ref|YP_001191516.1|	-	0.68	9.1	11.4	0.73	9.0	7.9	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF766)
DUF3733	PF12534.3	gi|146304200|ref|YP_001191516.1|	-	3.2	7.1	9.3	3.2	7.1	0.8	2.4	2	1	0	2	2	2	0	Leucine-rich	repeat	containing	protein	8
Hemerythrin	PF01814.18	gi|146304201|ref|YP_001191517.1|	-	4.9e-08	33.2	2.8	8.2e-08	32.4	2.0	1.4	1	1	0	1	1	1	1	Hemerythrin	HHE	cation	binding	domain
Rab3-GTPase_cat	PF13890.1	gi|146304201|ref|YP_001191517.1|	-	0.089	12.1	0.1	0.2	11.0	0.0	1.5	1	0	0	1	1	1	0	Rab3	GTPase-activating	protein	catalytic	subunit
Fer4	PF00037.22	gi|146304202|ref|YP_001191518.1|	-	1.7e-13	49.5	15.4	1.8e-07	30.4	4.6	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146304202|ref|YP_001191518.1|	-	1.8e-11	44.1	7.4	2.3e-11	43.7	5.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304202|ref|YP_001191518.1|	-	1.6e-09	37.3	18.8	3.6e-07	29.8	5.6	1.8	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304202|ref|YP_001191518.1|	-	2.7e-09	36.4	15.7	5.5e-06	26.0	4.2	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146304202|ref|YP_001191518.1|	-	1e-08	35.3	8.5	1.7e-08	34.7	5.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146304202|ref|YP_001191518.1|	-	3.7e-08	33.1	5.9	4.7e-08	32.7	4.1	1.2	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146304202|ref|YP_001191518.1|	-	4.3e-07	29.4	12.8	0.0029	17.4	1.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146304202|ref|YP_001191518.1|	-	9.5e-07	28.7	10.2	1.4e-05	25.0	4.4	1.7	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304202|ref|YP_001191518.1|	-	1.7e-06	28.3	3.5	0.0013	19.0	0.7	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146304202|ref|YP_001191518.1|	-	1e-05	25.4	8.4	0.016	15.4	2.4	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146304202|ref|YP_001191518.1|	-	3.2e-05	24.1	14.8	0.0076	16.7	4.6	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_17	PF13534.1	gi|146304202|ref|YP_001191518.1|	-	4.1e-05	23.8	0.7	0.21	11.9	0.3	2.1	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_15	PF13459.1	gi|146304202|ref|YP_001191518.1|	-	8.7e-05	23.0	10.2	0.093	13.3	0.2	2.4	2	1	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|146304202|ref|YP_001191518.1|	-	0.0002	21.6	10.4	0.085	13.2	0.3	2.3	2	0	0	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|146304202|ref|YP_001191518.1|	-	0.00023	21.8	7.4	0.0093	16.6	1.9	2.2	2	0	0	2	2	2	2	4Fe-4S	double	cluster	binding	domain
DUF2761	PF10959.3	gi|146304202|ref|YP_001191518.1|	-	0.012	15.2	0.0	0.016	14.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2761)
TrmB	PF01978.14	gi|146304203|ref|YP_001191519.1|	-	2.8e-06	26.9	0.0	4.2e-06	26.3	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146304203|ref|YP_001191519.1|	-	2.1e-05	24.7	0.1	3.4e-05	24.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|146304203|ref|YP_001191519.1|	-	2.1e-05	24.0	0.1	3.3e-05	23.4	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|146304203|ref|YP_001191519.1|	-	2.9e-05	23.6	0.1	4.7e-05	23.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.2	gi|146304203|ref|YP_001191519.1|	-	0.00073	19.2	0.1	0.001	18.8	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GntR	PF00392.16	gi|146304203|ref|YP_001191519.1|	-	0.00099	18.5	1.0	0.0017	17.7	0.2	1.9	2	1	0	2	2	2	1	Bacterial	regulatory	proteins,	gntR	family
Sulfolobus_pRN	PF05584.6	gi|146304203|ref|YP_001191519.1|	-	0.0011	18.9	0.1	0.002	18.0	0.1	1.4	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
TFIIE_alpha	PF02002.12	gi|146304203|ref|YP_001191519.1|	-	0.0012	18.3	0.1	0.0013	18.2	0.1	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_5	PF01022.15	gi|146304203|ref|YP_001191519.1|	-	0.013	15.2	0.0	0.021	14.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.14	gi|146304203|ref|YP_001191519.1|	-	0.032	14.1	0.0	0.054	13.4	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|146304203|ref|YP_001191519.1|	-	0.094	12.5	0.0	0.28	10.9	0.0	1.9	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|146304203|ref|YP_001191519.1|	-	0.13	12.1	0.0	0.22	11.4	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF2249	PF10006.4	gi|146304204|ref|YP_001191520.1|	-	6.4e-17	60.8	0.4	7.6e-16	57.4	0.0	2.3	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2249)
Cupin_2	PF07883.6	gi|146304204|ref|YP_001191520.1|	-	9.6e-09	34.6	0.4	2.1e-08	33.5	0.0	1.7	2	0	0	2	2	2	1	Cupin	domain
Cupin_3	PF05899.7	gi|146304204|ref|YP_001191520.1|	-	1.5e-05	24.2	0.0	2.9e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
Cupin_1	PF00190.17	gi|146304204|ref|YP_001191520.1|	-	0.00038	19.9	0.1	0.00056	19.3	0.0	1.2	1	0	0	1	1	1	1	Cupin
CENP-C_C	PF11699.3	gi|146304204|ref|YP_001191520.1|	-	0.00052	19.9	0.1	0.0011	18.8	0.0	1.6	2	0	0	2	2	2	1	Mif2/CENP-C	like
AraC_binding	PF02311.14	gi|146304204|ref|YP_001191520.1|	-	0.00075	19.1	0.0	0.0014	18.3	0.0	1.4	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
EutQ	PF06249.7	gi|146304204|ref|YP_001191520.1|	-	0.0014	18.2	0.1	0.0027	17.2	0.0	1.4	1	0	0	1	1	1	1	Ethanolamine	utilisation	protein	EutQ
TusA	PF01206.12	gi|146304204|ref|YP_001191520.1|	-	0.0082	15.7	0.0	0.018	14.6	0.0	1.5	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Pirin_C	PF05726.8	gi|146304204|ref|YP_001191520.1|	-	0.012	15.6	0.0	0.072	13.1	0.0	1.9	2	0	0	2	2	2	0	Pirin	C-terminal	cupin	domain
DUF4437	PF14499.1	gi|146304204|ref|YP_001191520.1|	-	0.059	12.2	0.0	0.079	11.8	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4437)
Auxin_BP	PF02041.11	gi|146304204|ref|YP_001191520.1|	-	0.092	12.1	0.0	0.16	11.4	0.0	1.3	1	0	0	1	1	1	0	Auxin	binding	protein
DUF1125	PF06563.6	gi|146304204|ref|YP_001191520.1|	-	0.15	11.7	0.6	2.3	7.9	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1125)
Esterase	PF00756.15	gi|146304205|ref|YP_001191521.1|	-	1.8e-14	53.8	0.0	5.7e-14	52.1	0.0	1.7	1	1	0	1	1	1	1	Putative	esterase
UPF0227	PF05728.7	gi|146304205|ref|YP_001191521.1|	-	0.018	14.7	0.0	0.038	13.7	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0227)
Abhydrolase_5	PF12695.2	gi|146304205|ref|YP_001191521.1|	-	0.13	11.9	0.0	0.17	11.6	0.0	1.4	1	0	0	1	1	1	0	Alpha/beta	hydrolase	family
Methyltransf_11	PF08241.7	gi|146304207|ref|YP_001191523.1|	-	9.2e-19	67.7	0.0	1.3e-18	67.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146304207|ref|YP_001191523.1|	-	5e-14	52.1	0.0	5.9e-14	51.9	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146304207|ref|YP_001191523.1|	-	2.1e-11	43.8	0.0	2.2e-11	43.7	0.0	1.1	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146304207|ref|YP_001191523.1|	-	9.2e-11	42.1	0.0	1.3e-10	41.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146304207|ref|YP_001191523.1|	-	9.1e-09	35.3	0.0	1.5e-08	34.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146304207|ref|YP_001191523.1|	-	3.3e-08	33.8	0.0	5.4e-08	33.1	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146304207|ref|YP_001191523.1|	-	5.5e-08	33.3	0.0	8e-08	32.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146304207|ref|YP_001191523.1|	-	2.7e-06	26.6	0.0	3.5e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.9	gi|146304207|ref|YP_001191523.1|	-	1.7e-05	24.2	0.0	2.6e-05	23.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_8	PF05148.10	gi|146304207|ref|YP_001191523.1|	-	2.4e-05	24.0	0.1	8.4e-05	22.2	0.0	1.7	1	1	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_32	PF13679.1	gi|146304207|ref|YP_001191523.1|	-	0.00013	21.6	0.0	0.00016	21.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
NodS	PF05401.6	gi|146304207|ref|YP_001191523.1|	-	0.0011	18.3	0.0	0.0015	17.9	0.0	1.2	1	0	0	1	1	1	1	Nodulation	protein	S	(NodS)
MetW	PF07021.7	gi|146304207|ref|YP_001191523.1|	-	0.0031	16.9	0.0	0.0043	16.4	0.0	1.2	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
Methyltransf_24	PF13578.1	gi|146304207|ref|YP_001191523.1|	-	0.032	15.0	0.0	0.046	14.5	0.0	1.3	1	0	0	1	1	1	0	Methyltransferase	domain
FtsJ	PF01728.14	gi|146304207|ref|YP_001191523.1|	-	0.05	13.5	0.0	0.068	13.1	0.0	1.5	1	1	0	1	1	1	0	FtsJ-like	methyltransferase
AdoMet_MTase	PF07757.8	gi|146304207|ref|YP_001191523.1|	-	0.086	12.9	0.1	0.21	11.7	0.0	1.7	1	1	0	1	1	1	0	Predicted	AdoMet-dependent	methyltransferase
CMAS	PF02353.15	gi|146304207|ref|YP_001191523.1|	-	0.095	11.7	0.0	0.11	11.5	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
Img2	PF05046.9	gi|146304208|ref|YP_001191524.1|	-	0.064	13.4	0.2	0.13	12.4	0.1	1.5	1	0	0	1	1	1	0	Mitochondrial	large	subunit	ribosomal	protein	(Img2)
DNA_pol_B	PF00136.16	gi|146304209|ref|YP_001191525.1|	-	3.2e-15	55.8	0.0	2.3e-11	43.1	0.0	3.3	2	1	0	2	2	2	2	DNA	polymerase	family	B
DUF2914	PF11141.3	gi|146304209|ref|YP_001191525.1|	-	0.033	13.6	0.1	0.14	11.6	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2914)
DUF429	PF04250.8	gi|146304211|ref|YP_001191527.1|	-	1.1e-30	106.4	0.6	4.3e-29	101.2	0.4	2.1	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF429)
Amino_oxidase	PF01593.19	gi|146304211|ref|YP_001191527.1|	-	0.067	12.2	0.0	0.079	12.0	0.0	1.1	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
AA_permease	PF00324.16	gi|146304212|ref|YP_001191528.1|	-	6.4e-11	41.2	46.8	3.8e-10	38.7	32.4	2.0	1	1	0	1	1	1	1	Amino	acid	permease
AIRC	PF00731.15	gi|146304213|ref|YP_001191529.1|	-	3.3e-71	237.4	0.2	3.7e-71	237.2	0.2	1.0	1	0	0	1	1	1	1	AIR	carboxylase
Fe-ADH	PF00465.14	gi|146304213|ref|YP_001191529.1|	-	0.035	12.7	0.1	0.054	12.1	0.1	1.2	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.1	gi|146304213|ref|YP_001191529.1|	-	0.096	11.9	0.0	0.13	11.5	0.0	1.1	1	0	0	1	1	1	0	Iron-containing	alcohol	dehydrogenase
ABC_sub_bind	PF04392.7	gi|146304213|ref|YP_001191529.1|	-	0.1	11.5	0.0	0.17	10.8	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter	substrate	binding	protein
DUF4419	PF14388.1	gi|146304213|ref|YP_001191529.1|	-	0.1	11.7	0.0	0.14	11.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4419)
Radical_SAM	PF04055.16	gi|146304213|ref|YP_001191529.1|	-	0.15	12.2	0.0	2.6	8.2	0.0	2.1	1	1	1	2	2	2	0	Radical	SAM	superfamily
ATP-grasp	PF02222.17	gi|146304214|ref|YP_001191530.1|	-	4.8e-43	146.4	0.0	7e-43	145.9	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|146304214|ref|YP_001191530.1|	-	3.7e-06	26.9	0.0	7.8e-06	25.8	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146304214|ref|YP_001191530.1|	-	3.9e-06	26.7	0.0	1.1e-05	25.3	0.0	1.6	1	1	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146304214|ref|YP_001191530.1|	-	0.0021	16.8	0.0	0.32	9.6	0.0	2.2	2	0	0	2	2	2	2	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
HTH_1	PF00126.22	gi|146304215|ref|YP_001191531.1|	-	0.00061	19.4	0.0	0.0011	18.6	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_28	PF13518.1	gi|146304215|ref|YP_001191531.1|	-	0.075	13.0	0.0	0.14	12.2	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
Dynactin_p22	PF07426.6	gi|146304215|ref|YP_001191531.1|	-	0.12	11.6	0.1	3.1	7.0	0.1	2.0	2	0	0	2	2	2	0	Dynactin	subunit	p22
LZ_Tnp_IS481	PF13011.1	gi|146304215|ref|YP_001191531.1|	-	0.13	12.6	0.1	0.27	11.5	0.0	1.5	2	0	0	2	2	2	0	leucine-zipper	of	insertion	element	IS481
TIM	PF00121.13	gi|146304216|ref|YP_001191532.1|	-	2e-27	95.8	0.6	3.1e-21	75.5	0.0	2.0	1	1	1	2	2	2	2	Triosephosphate	isomerase
ThiG	PF05690.9	gi|146304216|ref|YP_001191532.1|	-	3.4e-05	23.0	0.7	5.7e-05	22.3	0.5	1.4	1	0	0	1	1	1	1	Thiazole	biosynthesis	protein	ThiG
His_biosynth	PF00977.16	gi|146304216|ref|YP_001191532.1|	-	0.0053	16.0	1.2	0.029	13.6	0.1	2.4	3	0	0	3	3	3	1	Histidine	biosynthesis	protein
NMO	PF03060.10	gi|146304216|ref|YP_001191532.1|	-	0.0054	15.9	0.2	0.0095	15.1	0.1	1.4	1	0	0	1	1	1	1	Nitronate	monooxygenase
Glu_synthase	PF01645.12	gi|146304216|ref|YP_001191532.1|	-	0.011	14.7	1.1	0.019	13.8	0.1	1.7	2	0	0	2	2	2	0	Conserved	region	in	glutamate	synthase
DUF561	PF04481.7	gi|146304216|ref|YP_001191532.1|	-	0.017	14.0	0.8	0.1	11.5	0.1	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF561)
FMN_dh	PF01070.13	gi|146304216|ref|YP_001191532.1|	-	0.018	13.9	0.3	0.034	12.9	0.2	1.4	1	0	0	1	1	1	0	FMN-dependent	dehydrogenase
Trp_syntA	PF00290.15	gi|146304216|ref|YP_001191532.1|	-	0.02	13.4	0.4	0.02	13.4	0.3	1.9	3	0	0	3	3	3	0	Tryptophan	synthase	alpha	chain
PcrB	PF01884.12	gi|146304216|ref|YP_001191532.1|	-	0.35	10.1	3.9	0.13	11.5	0.5	1.9	3	0	0	3	3	3	0	PcrB	family
PEPCK	PF00821.13	gi|146304217|ref|YP_001191533.1|	-	2.5e-185	617.0	0.0	2.8e-185	616.8	0.0	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	carboxykinase
MFS_1	PF07690.11	gi|146304218|ref|YP_001191534.1|	-	3.6e-05	22.6	22.7	5.9e-05	21.9	15.8	1.3	1	0	0	1	1	1	1	Major	Facilitator	Superfamily
Lactamase_B	PF00753.22	gi|146304219|ref|YP_001191535.1|	-	9.6e-21	74.3	0.2	1.3e-20	73.9	0.2	1.1	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Lactamase_B_2	PF12706.2	gi|146304219|ref|YP_001191535.1|	-	6.3e-08	32.3	0.0	9e-08	31.8	0.0	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
AA_permease_2	PF13520.1	gi|146304220|ref|YP_001191536.1|	-	4e-39	134.3	60.1	4e-39	134.3	41.7	2.4	1	1	1	2	2	2	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146304220|ref|YP_001191536.1|	-	9.7e-32	109.9	59.1	9.7e-32	109.9	41.0	2.2	1	1	1	2	2	2	1	Amino	acid	permease
AMP-binding	PF00501.23	gi|146304221|ref|YP_001191537.1|	-	7.8e-85	284.7	0.0	1e-84	284.3	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146304221|ref|YP_001191537.1|	-	6.9e-23	81.3	0.4	1.8e-22	80.0	0.3	1.8	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Molybdopterin	PF00384.17	gi|146304222|ref|YP_001191538.1|	-	7.6e-69	232.5	0.0	9.3e-69	232.2	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase
Molydop_binding	PF01568.16	gi|146304222|ref|YP_001191538.1|	-	4.1e-25	87.7	0.0	7.5e-25	86.8	0.0	1.4	1	0	0	1	1	1	1	Molydopterin	dinucleotide	binding	domain
Molybdop_Fe4S4	PF04879.11	gi|146304222|ref|YP_001191538.1|	-	2e-16	59.5	1.1	4.6e-16	58.3	0.8	1.6	1	0	0	1	1	1	1	Molybdopterin	oxidoreductase	Fe4S4	domain
OKR_DC_1_C	PF03711.10	gi|146304222|ref|YP_001191538.1|	-	0.031	14.3	0.0	0.094	12.7	0.0	1.8	2	0	0	2	2	2	0	Orn/Lys/Arg	decarboxylase,	C-terminal	domain
Aldose_epim	PF01263.15	gi|146304223|ref|YP_001191539.1|	-	7.2e-33	113.9	0.0	1.7e-32	112.7	0.0	1.5	1	1	0	1	1	1	1	Aldose	1-epimerase
HTH_5	PF01022.15	gi|146304224|ref|YP_001191540.1|	-	2.3e-07	30.3	0.2	4.8e-07	29.3	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_24	PF13412.1	gi|146304224|ref|YP_001191540.1|	-	9.9e-06	24.8	1.4	1.7e-05	24.0	1.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|146304224|ref|YP_001191540.1|	-	0.00012	21.7	0.2	0.00019	21.0	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_34	PF13601.1	gi|146304224|ref|YP_001191540.1|	-	0.00012	22.0	0.0	0.00015	21.6	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|146304224|ref|YP_001191540.1|	-	0.00013	21.5	0.1	0.00027	20.5	0.1	1.4	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.1	gi|146304224|ref|YP_001191540.1|	-	0.0014	18.8	0.2	0.0021	18.3	0.1	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_20	PF12840.2	gi|146304224|ref|YP_001191540.1|	-	0.01	15.6	0.6	0.019	14.7	0.4	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_Mga	PF08280.6	gi|146304224|ref|YP_001191540.1|	-	0.011	15.4	0.1	0.021	14.6	0.1	1.5	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HemN_C	PF06969.11	gi|146304224|ref|YP_001191540.1|	-	0.026	14.5	1.9	0.033	14.2	0.6	1.8	1	1	1	2	2	2	0	HemN	C-terminal	domain
Trp_repressor	PF01371.14	gi|146304224|ref|YP_001191540.1|	-	0.036	13.9	0.7	0.12	12.2	0.0	2.0	2	1	0	2	2	2	0	Trp	repressor	protein
DUF2376	PF09550.5	gi|146304224|ref|YP_001191540.1|	-	0.044	13.9	0.0	8.1	6.6	0.0	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	phage	protein	(DUF2376)
HxlR	PF01638.12	gi|146304224|ref|YP_001191540.1|	-	0.048	13.2	0.4	0.066	12.8	0.3	1.3	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_IclR	PF09339.5	gi|146304224|ref|YP_001191540.1|	-	0.058	13.0	0.3	0.092	12.3	0.2	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_45	PF14947.1	gi|146304224|ref|YP_001191540.1|	-	0.063	13.1	0.2	0.11	12.3	0.1	1.4	1	1	0	1	1	1	0	Winged	helix-turn-helix
HTH_11	PF08279.7	gi|146304224|ref|YP_001191540.1|	-	0.092	12.4	0.4	0.17	11.5	0.3	1.6	1	0	0	1	1	1	0	HTH	domain
Sigma70_r4_2	PF08281.7	gi|146304224|ref|YP_001191540.1|	-	0.096	12.1	0.1	0.17	11.3	0.1	1.5	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_37	PF13744.1	gi|146304224|ref|YP_001191540.1|	-	0.1	12.4	0.1	0.88	9.4	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
TMEM101	PF15111.1	gi|146304224|ref|YP_001191540.1|	-	0.15	11.3	0.0	0.17	11.1	0.0	1.1	1	0	0	1	1	1	0	TMEM101	protein	family
Thermopsin	PF05317.6	gi|146304225|ref|YP_001191541.1|	-	8.3e-79	264.2	16.6	8.3e-79	264.2	11.5	2.9	3	1	1	4	4	4	1	Thermopsin
Podoplanin	PF05808.6	gi|146304225|ref|YP_001191541.1|	-	0.022	14.3	0.8	0.04	13.4	0.6	1.3	1	0	0	1	1	1	0	Podoplanin
TMEM154	PF15102.1	gi|146304225|ref|YP_001191541.1|	-	0.046	13.4	1.2	0.13	11.9	0.8	1.7	1	0	0	1	1	1	0	TMEM154	protein	family
Shisa	PF13908.1	gi|146304226|ref|YP_001191542.1|	-	0.041	14.0	0.8	0.082	13.0	0.6	1.5	1	0	0	1	1	1	0	Wnt	and	FGF	inhibitory	regulator
DUF1180	PF06679.7	gi|146304226|ref|YP_001191542.1|	-	0.17	11.7	1.4	0.38	10.6	1.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1180)
LPAM_1	PF08139.7	gi|146304226|ref|YP_001191542.1|	-	0.18	12.0	4.1	0.51	10.6	2.8	1.8	1	0	0	1	1	1	0	Prokaryotic	membrane	lipoprotein	lipid	attachment	site
Rifin_STEVOR	PF02009.11	gi|146304226|ref|YP_001191542.1|	-	0.7	9.4	2.0	1.2	8.6	1.4	1.3	1	0	0	1	1	1	0	Rifin/stevor	family
TMEM154	PF15102.1	gi|146304226|ref|YP_001191542.1|	-	1.8	8.2	6.3	0.21	11.2	0.6	2.3	2	0	0	2	2	2	0	TMEM154	protein	family
Lyase_1	PF00206.15	gi|146304227|ref|YP_001191543.1|	-	2.1e-91	306.4	0.1	2.6e-91	306.0	0.1	1.1	1	0	0	1	1	1	1	Lyase
FumaraseC_C	PF10415.4	gi|146304227|ref|YP_001191543.1|	-	1.1e-11	44.6	0.0	2.1e-11	43.7	0.0	1.5	1	0	0	1	1	1	1	Fumarase	C	C-terminus
HTH_23	PF13384.1	gi|146304227|ref|YP_001191543.1|	-	0.12	12.1	0.0	0.29	10.8	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
FAD_binding_4	PF01565.18	gi|146304228|ref|YP_001191544.1|	-	8.8e-10	38.1	0.0	1.6e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	FAD	binding	domain
NicO	PF03824.11	gi|146304229|ref|YP_001191545.1|	-	0.0028	17.0	0.8	0.0028	17.0	0.6	3.1	2	1	1	3	3	3	1	High-affinity	nickel-transport	protein
COX1	PF00115.15	gi|146304229|ref|YP_001191545.1|	-	2.1	6.8	16.3	0.055	12.0	1.2	2.7	3	0	0	3	3	3	0	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
CCG	PF02754.11	gi|146304230|ref|YP_001191546.1|	-	1.5e-08	34.5	0.0	1.4e-06	28.2	0.0	2.5	2	0	0	2	2	2	2	Cysteine-rich	domain
DUF162	PF02589.10	gi|146304231|ref|YP_001191547.1|	-	4.9e-48	163.1	0.1	7.1e-48	162.6	0.1	1.2	1	0	0	1	1	1	1	Uncharacterised	ACR,	YkgG	family	COG1556
Fer4_8	PF13183.1	gi|146304231|ref|YP_001191547.1|	-	1.2e-10	41.2	1.7	1.9e-10	40.5	1.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304231|ref|YP_001191547.1|	-	3.1e-07	30.7	1.1	0.031	14.7	0.1	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304231|ref|YP_001191547.1|	-	1.7e-05	24.5	5.0	0.00061	19.5	4.2	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146304231|ref|YP_001191547.1|	-	5.6e-05	23.4	4.8	0.00038	20.7	3.6	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304231|ref|YP_001191547.1|	-	0.00028	21.1	4.2	0.00066	20.0	2.9	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146304231|ref|YP_001191547.1|	-	0.00029	21.0	6.2	0.012	15.8	5.3	2.2	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|146304231|ref|YP_001191547.1|	-	0.0013	18.2	1.6	0.077	12.6	0.1	2.4	2	0	0	2	2	2	1	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_6	PF12837.2	gi|146304231|ref|YP_001191547.1|	-	0.0028	17.4	9.0	0.024	14.5	1.7	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4	PF00037.22	gi|146304231|ref|YP_001191547.1|	-	0.0045	16.5	8.4	0.0068	15.9	1.4	2.3	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_3	PF12798.2	gi|146304231|ref|YP_001191547.1|	-	0.0092	16.4	11.4	0.73	10.5	0.4	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304231|ref|YP_001191547.1|	-	0.038	14.3	6.9	0.14	12.5	0.9	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_2	PF12797.2	gi|146304231|ref|YP_001191547.1|	-	0.093	12.6	6.5	0.18	11.8	0.8	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146304231|ref|YP_001191547.1|	-	0.39	10.5	8.8	5.2	7.0	6.1	2.2	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146304231|ref|YP_001191547.1|	-	0.75	10.5	6.8	7.3	7.4	4.7	2.3	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Aconitase	PF00330.15	gi|146304232|ref|YP_001191548.1|	-	1.1e-128	429.6	0.0	2.9e-128	428.2	0.0	1.7	2	1	0	2	2	2	1	Aconitase	family	(aconitate	hydratase)
Aconitase_C	PF00694.14	gi|146304232|ref|YP_001191548.1|	-	1.4e-33	115.7	0.0	2.7e-33	114.8	0.0	1.5	1	0	0	1	1	1	1	Aconitase	C-terminal	domain
Antitoxin-MazE	PF04014.13	gi|146304233|ref|YP_001191549.1|	-	4.5e-10	39.0	0.1	4.9e-10	38.9	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
eIF-1a	PF01176.14	gi|146304233|ref|YP_001191549.1|	-	0.00033	19.9	0.4	0.00093	18.5	0.1	1.7	1	1	1	2	2	2	1	Translation	initiation	factor	1A	/	IF-1
UPF0270	PF06794.7	gi|146304233|ref|YP_001191549.1|	-	0.029	14.0	0.0	0.032	13.9	0.0	1.1	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0270)
DUF1905	PF08922.6	gi|146304233|ref|YP_001191549.1|	-	0.13	11.8	0.0	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1905)
DUF2258	PF10015.4	gi|146304233|ref|YP_001191549.1|	-	0.24	11.2	1.6	0.78	9.5	1.1	1.7	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2258)
tRNA_m1G_MT	PF01746.16	gi|146304234|ref|YP_001191550.1|	-	8.4e-13	48.3	0.5	1.1e-11	44.6	0.4	2.0	1	1	0	1	1	1	1	tRNA	(Guanine-1)-methyltransferase
RNA_Me_trans	PF04252.8	gi|146304234|ref|YP_001191550.1|	-	0.0076	15.6	0.0	0.011	15.1	0.0	1.2	1	0	0	1	1	1	1	Predicted	SAM-dependent	RNA	methyltransferase
CLU_N	PF15044.1	gi|146304234|ref|YP_001191550.1|	-	0.11	12.7	0.1	0.18	11.9	0.1	1.4	1	0	0	1	1	1	0	Mitochondrial	function,	CLU-N-term
CoA_trans	PF01144.18	gi|146304236|ref|YP_001191552.1|	-	1.7e-24	86.2	0.0	1.9e-24	86.0	0.0	1.1	1	0	0	1	1	1	1	Coenzyme	A	transferase
CoA_trans	PF01144.18	gi|146304237|ref|YP_001191553.1|	-	2.6e-22	79.0	0.2	3e-22	78.8	0.1	1.0	1	0	0	1	1	1	1	Coenzyme	A	transferase
Methyltransf_11	PF08241.7	gi|146304238|ref|YP_001191554.1|	-	0.0079	16.6	0.0	0.014	15.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
CBS	PF00571.23	gi|146304239|ref|YP_001191555.1|	-	2.3e-30	104.0	0.6	3.2e-14	52.4	0.0	2.1	2	0	0	2	2	2	2	CBS	domain
DSBA	PF01323.15	gi|146304240|ref|YP_001191556.1|	-	1e-24	87.1	1.2	9.5e-14	51.3	0.1	2.1	2	0	0	2	2	2	2	DSBA-like	thioredoxin	domain
Thioredoxin_5	PF13743.1	gi|146304240|ref|YP_001191556.1|	-	2.5e-21	76.0	0.1	5.2e-21	74.9	0.1	1.5	1	1	0	1	1	1	1	Thioredoxin
Thioredoxin_4	PF13462.1	gi|146304240|ref|YP_001191556.1|	-	2.2e-13	50.5	0.6	2.7e-09	37.2	0.1	2.1	2	0	0	2	2	2	2	Thioredoxin
Thioredoxin_3	PF13192.1	gi|146304240|ref|YP_001191556.1|	-	8.7e-07	28.6	0.1	5.3e-05	22.9	0.0	2.4	2	0	0	2	2	2	1	Thioredoxin	domain
Thioredoxin_2	PF13098.1	gi|146304240|ref|YP_001191556.1|	-	1.1e-05	25.5	0.2	0.11	12.7	0.0	2.2	2	0	0	2	2	2	2	Thioredoxin-like	domain
QueF	PF14489.1	gi|146304240|ref|YP_001191556.1|	-	0.046	13.6	0.0	0.67	9.9	0.0	2.3	2	0	0	2	2	2	0	QueF-like	protein
Syntaxin	PF00804.20	gi|146304241|ref|YP_001191557.1|	-	8.9e-06	25.8	0.1	0.0076	16.3	0.0	2.1	1	1	1	2	2	2	2	Syntaxin
Vip3A_N	PF12495.3	gi|146304241|ref|YP_001191557.1|	-	0.025	14.2	1.1	0.042	13.5	0.8	1.6	1	1	0	1	1	1	0	Vegetative	insecticide	protein	3A	N	terminal
CHAD	PF05235.9	gi|146304241|ref|YP_001191557.1|	-	0.027	14.0	0.1	0.18	11.3	0.0	1.9	2	0	0	2	2	2	0	CHAD	domain
Mod_r	PF07200.8	gi|146304241|ref|YP_001191557.1|	-	0.11	12.4	0.5	2.3	8.1	0.1	2.1	2	0	0	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
DUF1409	PF07197.7	gi|146304241|ref|YP_001191557.1|	-	0.13	12.3	1.5	0.21	11.6	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1409)
OsmC	PF02566.14	gi|146304242|ref|YP_001191558.1|	-	3e-16	59.4	0.0	5e-16	58.7	0.0	1.3	1	0	0	1	1	1	1	OsmC-like	protein
HTH_1	PF00126.22	gi|146304243|ref|YP_001191559.1|	-	0.1	12.3	0.0	0.17	11.6	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
CBS	PF00571.23	gi|146304244|ref|YP_001191560.1|	-	3.8e-42	141.8	17.5	3.1e-13	49.2	0.4	4.6	4	1	0	4	4	4	4	CBS	domain
BPL_LplA_LipB	PF03099.14	gi|146304245|ref|YP_001191561.1|	-	1.2e-08	34.9	0.1	2.4e-08	34.0	0.0	1.5	2	0	0	2	2	2	1	Biotin/lipoate	A/B	protein	ligase	family
Lip_prot_lig_C	PF10437.4	gi|146304245|ref|YP_001191561.1|	-	0.0034	17.0	0.1	0.011	15.4	0.1	1.9	1	1	0	1	1	1	1	Bacterial	lipoate	protein	ligase	C-terminus
GCV_H	PF01597.14	gi|146304246|ref|YP_001191562.1|	-	1.7e-42	143.9	1.7	2.1e-42	143.6	1.1	1.1	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.17	gi|146304246|ref|YP_001191562.1|	-	2.3e-06	27.1	3.7	3.7e-06	26.4	2.6	1.3	1	0	0	1	1	1	1	Biotin-requiring	enzyme
RnfC_N	PF13375.1	gi|146304246|ref|YP_001191562.1|	-	0.00017	21.2	0.5	0.00028	20.5	0.3	1.4	1	0	0	1	1	1	1	RnfC	Barrel	sandwich	hybrid	domain
DUF2118	PF09891.4	gi|146304246|ref|YP_001191562.1|	-	0.071	12.8	0.1	0.11	12.2	0.1	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2118)
Peptidase_M23	PF01551.17	gi|146304246|ref|YP_001191562.1|	-	0.096	12.7	1.3	1.4	9.0	0.2	2.2	1	1	1	2	2	2	0	Peptidase	family	M23
Biotin_lipoyl_2	PF13533.1	gi|146304246|ref|YP_001191562.1|	-	0.12	12.0	1.5	2.7	7.7	0.1	2.4	2	0	0	2	2	2	0	Biotin-lipoyl	like
DUF123	PF01986.11	gi|146304247|ref|YP_001191563.1|	-	5.4e-18	64.9	0.0	7.8e-18	64.4	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF123
GIY-YIG	PF01541.19	gi|146304247|ref|YP_001191563.1|	-	0.087	13.1	0.0	0.11	12.8	0.0	1.2	1	0	0	1	1	1	0	GIY-YIG	catalytic	domain
SfsA	PF03749.8	gi|146304248|ref|YP_001191564.1|	-	7.7e-50	169.3	0.0	1e-49	168.9	0.0	1.1	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein
Inhibitor_G39P	PF11417.3	gi|146304248|ref|YP_001191564.1|	-	0.16	11.9	0.0	0.26	11.3	0.0	1.3	1	0	0	1	1	1	0	Loader	and	inhibitor	of	phage	G40P
Peptidase_M20	PF01546.23	gi|146304249|ref|YP_001191565.1|	-	7.8e-29	100.5	0.0	1e-28	100.1	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|146304249|ref|YP_001191565.1|	-	2.9e-17	62.4	0.0	7.3e-17	61.1	0.0	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
MORN_2	PF07661.8	gi|146304251|ref|YP_001191567.1|	-	0.038	13.9	3.7	4.5	7.6	0.0	3.3	2	1	1	3	3	3	0	MORN	repeat	variant
ATP_bind_3	PF01171.15	gi|146304252|ref|YP_001191568.1|	-	9.2e-15	54.5	0.0	2.1e-14	53.4	0.0	1.6	1	1	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|146304252|ref|YP_001191568.1|	-	0.00039	19.0	0.1	0.00078	18.0	0.1	1.4	1	1	0	1	1	1	1	tRNA	methyl	transferase
PAPS_reduct	PF01507.14	gi|146304252|ref|YP_001191568.1|	-	0.001	18.9	0.0	0.0029	17.4	0.0	1.8	1	1	0	1	1	1	1	Phosphoadenosine	phosphosulfate	reductase	family
RecR	PF02132.10	gi|146304252|ref|YP_001191568.1|	-	0.028	13.8	1.3	0.028	13.8	0.9	3.0	3	0	0	3	3	3	0	RecR	protein
Asn_synthase	PF00733.16	gi|146304252|ref|YP_001191568.1|	-	0.042	13.3	0.0	0.059	12.8	0.0	1.2	1	0	0	1	1	1	0	Asparagine	synthase
DZR	PF12773.2	gi|146304252|ref|YP_001191568.1|	-	0.05	13.4	7.5	0.94	9.3	0.7	3.2	3	0	0	3	3	3	0	Double	zinc	ribbon
NAD_synthase	PF02540.12	gi|146304252|ref|YP_001191568.1|	-	0.058	12.2	0.1	0.086	11.7	0.0	1.2	1	0	0	1	1	1	0	NAD	synthase
QueC	PF06508.8	gi|146304252|ref|YP_001191568.1|	-	0.07	12.3	0.1	0.11	11.7	0.1	1.5	1	1	0	1	1	1	0	Queuosine	biosynthesis	protein	QueC
Oxidored_nitro	PF00148.14	gi|146304252|ref|YP_001191568.1|	-	0.11	11.1	0.1	3.4	6.1	0.0	2.4	3	0	0	3	3	3	0	Nitrogenase	component	1	type	Oxidoreductase
Nudix_N_2	PF14803.1	gi|146304252|ref|YP_001191568.1|	-	0.16	11.7	7.4	3	7.6	0.0	3.7	3	1	0	3	3	3	0	Nudix	N-terminal
zf-ribbon_3	PF13248.1	gi|146304252|ref|YP_001191568.1|	-	0.26	10.5	7.2	2	7.7	0.8	3.3	3	0	0	3	3	3	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146304252|ref|YP_001191568.1|	-	1.7	7.9	11.7	4.4	6.6	0.9	3.6	3	0	0	3	3	3	0	TFIIB	zinc-binding
Cys_rich_KTR	PF14205.1	gi|146304252|ref|YP_001191568.1|	-	3.7	7.0	6.0	0.26	10.7	0.3	2.0	2	0	0	2	2	1	0	Cysteine-rich	KTR
Zn_Tnp_IS1595	PF12760.2	gi|146304252|ref|YP_001191568.1|	-	8.4	6.2	8.0	15	5.4	0.1	3.3	4	0	0	4	4	4	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|146304254|ref|YP_001191570.1|	-	1.5e-08	33.5	3.2	2.4e-08	32.9	2.2	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146304254|ref|YP_001191570.1|	-	5.3e-07	28.9	3.0	1e-06	28.0	2.0	1.5	1	0	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|146304254|ref|YP_001191570.1|	-	1e-05	25.2	2.6	1.6e-05	24.6	1.8	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
zf-DHHC	PF01529.15	gi|146304254|ref|YP_001191570.1|	-	0.00023	20.5	0.0	0.00023	20.5	0.0	1.2	1	0	0	1	1	1	1	DHHC	palmitoyltransferase
zf-RanBP	PF00641.13	gi|146304254|ref|YP_001191570.1|	-	0.0016	17.4	1.0	0.0024	16.9	0.7	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
UPF0547	PF10571.4	gi|146304254|ref|YP_001191570.1|	-	0.058	13.0	1.3	0.11	12.2	0.9	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
RRN7	PF11781.3	gi|146304254|ref|YP_001191570.1|	-	0.11	12.0	2.9	1.3	8.5	0.2	2.3	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Nudix_N_2	PF14803.1	gi|146304254|ref|YP_001191570.1|	-	0.16	11.6	4.8	2.5	7.8	0.5	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
zf-NADH-PPase	PF09297.6	gi|146304254|ref|YP_001191570.1|	-	0.31	10.6	6.2	7.1	6.2	4.3	2.2	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
Auto_anti-p27	PF06677.7	gi|146304254|ref|YP_001191570.1|	-	0.37	10.5	2.0	7.1	6.4	0.3	2.4	2	0	0	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
Ribosomal_L37e	PF01907.14	gi|146304254|ref|YP_001191570.1|	-	0.48	10.2	3.7	0.42	10.4	1.0	2.0	1	1	0	1	1	1	0	Ribosomal	protein	L37e
PAT1	PF09770.4	gi|146304254|ref|YP_001191570.1|	-	3.4	5.7	9.5	4.1	5.5	6.6	1.1	1	0	0	1	1	1	0	Topoisomerase	II-associated	protein	PAT1
zf-tcix	PF14952.1	gi|146304254|ref|YP_001191570.1|	-	3.8	6.9	7.7	18	4.7	4.5	2.1	1	1	1	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
FHA	PF00498.21	gi|146304255|ref|YP_001191571.1|	-	8.5e-15	54.6	0.1	1.4e-14	53.9	0.0	1.4	1	0	0	1	1	1	1	FHA	domain
zf-ribbon_3	PF13248.1	gi|146304255|ref|YP_001191571.1|	-	1.8e-05	23.8	1.1	2.8e-05	23.1	0.7	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-RanBP	PF00641.13	gi|146304255|ref|YP_001191571.1|	-	0.0002	20.3	0.9	0.0003	19.8	0.6	1.3	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.2	gi|146304255|ref|YP_001191571.1|	-	0.00022	21.0	2.1	0.00035	20.3	1.5	1.4	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.1	gi|146304255|ref|YP_001191571.1|	-	0.00029	20.2	2.8	0.00052	19.4	1.9	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
PAT1	PF09770.4	gi|146304255|ref|YP_001191571.1|	-	0.024	12.9	16.5	0.026	12.8	11.5	1.0	1	0	0	1	1	1	0	Topoisomerase	II-associated	protein	PAT1
ECR1_N	PF14382.1	gi|146304255|ref|YP_001191571.1|	-	0.15	11.4	0.0	0.23	10.7	0.0	1.3	1	0	0	1	1	1	0	Exosome	complex	exonuclease	RRP4	N-terminal	region
EPL1	PF10513.4	gi|146304255|ref|YP_001191571.1|	-	0.53	10.5	6.3	0.84	9.8	4.4	1.3	1	0	0	1	1	1	0	Enhancer	of	polycomb-like
Pneumo_att_G	PF05539.6	gi|146304255|ref|YP_001191571.1|	-	1.2	8.4	12.0	1.4	8.1	8.3	1.1	1	0	0	1	1	1	0	Pneumovirinae	attachment	membrane	glycoprotein	G
DUF605	PF04652.11	gi|146304255|ref|YP_001191571.1|	-	1.5	8.1	19.2	1.8	7.9	13.3	1.1	1	0	0	1	1	1	0	Vta1	like
Suf	PF05843.9	gi|146304255|ref|YP_001191571.1|	-	8.4	6.0	8.6	11	5.5	5.9	1.2	1	0	0	1	1	1	0	Suppressor	of	forked	protein	(Suf)
Metallophos	PF00149.23	gi|146304256|ref|YP_001191572.1|	-	1.3e-27	96.4	0.3	1.6e-27	96.2	0.2	1.1	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|146304256|ref|YP_001191572.1|	-	4.2e-07	29.9	0.0	4.8e-07	29.7	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
VWA_2	PF13519.1	gi|146304257|ref|YP_001191573.1|	-	9e-23	81.2	0.0	2.2e-22	79.9	0.0	1.7	1	1	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA	PF00092.23	gi|146304257|ref|YP_001191573.1|	-	6e-20	71.6	0.1	1.2e-19	70.6	0.0	1.5	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
VWA_3	PF13768.1	gi|146304257|ref|YP_001191573.1|	-	3.4e-14	52.8	0.0	8.4e-14	51.5	0.0	1.6	2	0	0	2	2	2	1	von	Willebrand	factor	type	A	domain
VWA_CoxE	PF05762.9	gi|146304257|ref|YP_001191573.1|	-	6.9e-09	35.1	0.0	1.5e-08	34.0	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
DUF2201	PF09967.4	gi|146304257|ref|YP_001191573.1|	-	4.7e-05	23.3	0.0	9.4e-05	22.4	0.0	1.5	1	0	0	1	1	1	1	VWA-like	domain	(DUF2201)
vWA-TerF-like	PF10138.4	gi|146304257|ref|YP_001191573.1|	-	0.0017	18.2	0.3	0.0063	16.3	0.0	2.1	2	1	0	2	2	2	1	vWA	found	in	TerF	C	terminus
Ufm1	PF03671.9	gi|146304257|ref|YP_001191573.1|	-	0.06	13.1	0.3	0.8	9.5	0.0	2.5	2	0	0	2	2	2	0	Ubiquitin	fold	modifier	1	protein
DEAD	PF00270.24	gi|146304259|ref|YP_001191575.1|	-	1.2e-44	151.7	0.0	8.6e-42	142.4	0.0	2.1	2	0	0	2	2	2	2	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|146304259|ref|YP_001191575.1|	-	1.7e-24	85.4	0.6	4.7e-24	84.0	0.3	1.8	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|146304259|ref|YP_001191575.1|	-	7.6e-07	29.1	0.0	1.7e-06	27.9	0.0	1.6	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SecA_DEAD	PF07517.9	gi|146304259|ref|YP_001191575.1|	-	0.00063	19.1	0.1	0.0046	16.2	0.1	2.1	1	1	0	1	1	1	1	SecA	DEAD-like	domain
T4SS-DNA_transf	PF02534.9	gi|146304259|ref|YP_001191575.1|	-	0.0079	14.8	0.0	0.011	14.2	0.0	1.2	1	0	0	1	1	1	1	Type	IV	secretory	system	Conjugative	DNA	transfer
Helicase_C_2	PF13307.1	gi|146304259|ref|YP_001191575.1|	-	0.015	15.2	0.0	0.068	13.1	0.0	1.9	2	0	0	2	2	2	0	Helicase	C-terminal	domain
CMS1	PF14617.1	gi|146304259|ref|YP_001191575.1|	-	0.021	13.8	0.2	0.08	11.9	0.0	2.0	2	0	0	2	2	2	0	U3-containing	90S	pre-ribosomal	complex	subunit
DUF3311	PF11755.3	gi|146304260|ref|YP_001191576.1|	-	1.7e-10	40.2	0.7	1.8e-10	40.1	0.5	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3311)
YukC	PF10140.4	gi|146304261|ref|YP_001191577.1|	-	0.32	9.5	0.6	0.54	8.7	0.1	1.5	2	0	0	2	2	2	0	WXG100	protein	secretion	system	(Wss),	protein	YukC
HTH_27	PF13463.1	gi|146304262|ref|YP_001191578.1|	-	0.0018	18.5	0.0	0.002	18.4	0.0	1.1	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HxlR	PF01638.12	gi|146304262|ref|YP_001191578.1|	-	0.0019	17.7	0.1	0.0022	17.5	0.1	1.0	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
HTH_45	PF14947.1	gi|146304262|ref|YP_001191578.1|	-	0.0082	15.9	0.1	0.011	15.5	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|146304262|ref|YP_001191578.1|	-	0.0091	16.0	0.0	0.0092	15.9	0.0	1.0	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
PadR	PF03551.9	gi|146304262|ref|YP_001191578.1|	-	0.014	15.1	0.1	0.017	14.8	0.1	1.1	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
Sulfolobus_pRN	PF05584.6	gi|146304262|ref|YP_001191578.1|	-	0.02	14.8	0.1	0.023	14.6	0.1	1.2	1	0	0	1	1	1	0	Sulfolobus	plasmid	regulatory	protein
FeoC	PF09012.5	gi|146304262|ref|YP_001191578.1|	-	0.021	14.5	0.0	0.029	14.0	0.0	1.3	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
NPHI_C	PF08469.5	gi|146304263|ref|YP_001191579.1|	-	0.069	13.0	0.0	1.2	9.0	0.0	2.1	1	1	1	2	2	2	0	Nucleoside	triphosphatase	I	C-terminal
DUF929	PF06053.6	gi|146304264|ref|YP_001191580.1|	-	5.4e-84	281.1	8.7	6.2e-84	280.9	6.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF929)
Yip1	PF04893.12	gi|146304264|ref|YP_001191580.1|	-	0.016	14.7	0.3	0.028	13.9	0.2	1.3	1	0	0	1	1	1	0	Yip1	domain
DUF1296	PF06972.6	gi|146304265|ref|YP_001191581.1|	-	0.07	13.0	0.2	7	6.6	0.0	3.5	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1296)
Na_H_Exchanger	PF00999.16	gi|146304266|ref|YP_001191582.1|	-	4.3e-51	173.6	55.4	5.8e-51	173.1	38.4	1.0	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
DUF1404	PF07185.6	gi|146304267|ref|YP_001191583.1|	-	8.3e-56	188.1	13.8	9.5e-56	187.9	9.6	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1404)
AA_permease_2	PF13520.1	gi|146304268|ref|YP_001191584.1|	-	2.1e-36	125.3	65.2	2.7e-36	125.0	45.2	1.1	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146304268|ref|YP_001191584.1|	-	2e-09	36.3	57.7	5.8e-09	34.8	40.0	1.7	1	1	0	1	1	1	1	Amino	acid	permease
Lysis_S	PF04971.7	gi|146304268|ref|YP_001191584.1|	-	0.03	14.0	2.2	4.9	6.8	0.3	4.0	3	1	0	3	3	3	0	Lysis	protein	S
P12	PF12669.2	gi|146304268|ref|YP_001191584.1|	-	0.099	12.8	0.5	0.099	12.8	0.3	4.0	4	0	0	4	4	4	0	Virus	attachment	protein	p12	family
DUF1286	PF06939.6	gi|146304269|ref|YP_001191585.1|	-	1.6e-37	128.1	3.6	1.6e-37	128.1	2.5	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1286)
DUF457	PF04307.9	gi|146304269|ref|YP_001191585.1|	-	6.1e-06	25.6	2.0	6.1e-06	25.6	1.4	2.1	1	1	1	2	2	2	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
Abi	PF02517.11	gi|146304269|ref|YP_001191585.1|	-	9.8	6.3	10.1	56	3.9	7.0	2.4	1	1	0	1	1	1	0	CAAX	protease	self-immunity
EVE	PF01878.13	gi|146304270|ref|YP_001191586.1|	-	1.3e-16	60.9	0.1	1.3e-16	60.8	0.1	1.1	1	0	0	1	1	1	1	EVE	domain
BPL_LplA_LipB	PF03099.14	gi|146304271|ref|YP_001191587.1|	-	2.2e-13	50.3	0.0	3.9e-13	49.4	0.0	1.4	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Radical_SAM	PF04055.16	gi|146304272|ref|YP_001191588.1|	-	1.2e-12	48.2	0.0	1.8e-12	47.7	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146304272|ref|YP_001191588.1|	-	0.018	15.1	0.0	0.029	14.4	0.0	1.3	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Amidohydro_2	PF04909.9	gi|146304272|ref|YP_001191588.1|	-	0.03	13.8	0.0	0.048	13.2	0.0	1.2	1	0	0	1	1	1	0	Amidohydrolase
Radical_SAM	PF04055.16	gi|146304273|ref|YP_001191589.1|	-	2.4e-11	44.0	0.4	5.3e-11	42.9	0.0	1.7	2	0	0	2	2	2	1	Radical	SAM	superfamily
Pyr_redox	PF00070.22	gi|146304274|ref|YP_001191590.1|	-	3.2e-21	75.5	1.6	7.1e-19	67.9	0.3	2.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_2	PF07992.9	gi|146304274|ref|YP_001191590.1|	-	2.5e-16	60.1	0.0	5.9e-15	55.6	0.0	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146304274|ref|YP_001191590.1|	-	6.1e-07	28.6	4.2	8.4e-05	21.6	0.0	3.7	3	1	1	4	4	4	1	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146304274|ref|YP_001191590.1|	-	1.4e-06	28.5	0.2	0.0005	20.2	0.0	2.8	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304274|ref|YP_001191590.1|	-	0.0006	19.7	0.4	1.7	8.7	0.0	2.9	3	0	0	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
AlaDh_PNT_C	PF01262.16	gi|146304274|ref|YP_001191590.1|	-	0.00062	19.3	0.9	0.51	9.8	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146304274|ref|YP_001191590.1|	-	0.0019	17.9	0.8	0.003	17.3	0.0	1.8	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_binding_3	PF01494.14	gi|146304274|ref|YP_001191590.1|	-	0.0035	16.4	0.5	0.11	11.5	0.2	2.4	2	0	0	2	2	2	1	FAD	binding	domain
Oxidored_nitro	PF00148.14	gi|146304274|ref|YP_001191590.1|	-	0.0063	15.2	0.0	0.0096	14.6	0.0	1.3	1	0	0	1	1	1	1	Nitrogenase	component	1	type	Oxidoreductase
GIDA	PF01134.17	gi|146304274|ref|YP_001191590.1|	-	0.016	14.1	0.0	1.7	7.4	0.0	2.4	2	0	0	2	2	2	0	Glucose	inhibited	division	protein	A
Big_3_3	PF13750.1	gi|146304274|ref|YP_001191590.1|	-	0.019	14.3	0.0	0.035	13.5	0.0	1.4	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	3)
3HCDH_N	PF02737.13	gi|146304274|ref|YP_001191590.1|	-	0.025	14.2	0.1	0.049	13.2	0.1	1.5	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
UDPG_MGDP_dh_N	PF03721.9	gi|146304274|ref|YP_001191590.1|	-	0.033	13.5	0.3	0.2	11.0	0.0	2.1	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
Spermine_synth	PF01564.12	gi|146304274|ref|YP_001191590.1|	-	0.099	11.5	0.3	0.17	10.7	0.2	1.4	1	0	0	1	1	1	0	Spermine/spermidine	synthase
NAD_binding_7	PF13241.1	gi|146304274|ref|YP_001191590.1|	-	0.12	12.6	0.1	0.95	9.7	0.0	2.2	2	0	0	2	2	2	0	Putative	NAD(P)-binding
HI0933_like	PF03486.9	gi|146304274|ref|YP_001191590.1|	-	0.17	10.3	1.9	5.4	5.3	0.1	3.0	2	1	1	3	3	3	0	HI0933-like	protein
CEP19	PF14933.1	gi|146304274|ref|YP_001191590.1|	-	0.27	11.5	0.9	0.48	10.6	0.2	1.7	1	1	1	2	2	2	0	CEP19-like	protein
TusA	PF01206.12	gi|146304275|ref|YP_001191591.1|	-	2.9e-10	39.6	0.1	3.4e-10	39.4	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|146304275|ref|YP_001191591.1|	-	0.018	14.6	0.0	0.041	13.4	0.0	1.7	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2249)
Methyltransf_4	PF02390.12	gi|146304275|ref|YP_001191591.1|	-	0.083	11.9	0.0	0.087	11.8	0.0	1.1	1	0	0	1	1	1	0	Putative	methyltransferase
HAD_2	PF13419.1	gi|146304276|ref|YP_001191592.1|	-	1.7e-16	60.9	0.0	2.3e-16	60.5	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146304276|ref|YP_001191592.1|	-	6e-08	32.2	0.0	1.1e-07	31.5	0.0	1.4	1	0	0	1	1	1	1	HAD-hyrolase-like
Hydrolase	PF00702.21	gi|146304276|ref|YP_001191592.1|	-	3.7e-06	27.4	0.0	4e-06	27.3	0.0	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|146304276|ref|YP_001191592.1|	-	4.5e-05	23.2	0.0	0.00099	18.9	0.0	2.2	2	0	0	2	2	2	1	Haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146304276|ref|YP_001191592.1|	-	0.03	14.4	0.0	0.032	14.3	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Acid_phosphat_B	PF03767.9	gi|146304276|ref|YP_001191592.1|	-	0.13	11.6	0.0	0.19	11.0	0.0	1.2	1	0	0	1	1	1	0	HAD	superfamily,	subfamily	IIIB	(Acid	phosphatase)
Sugar_tr	PF00083.19	gi|146304277|ref|YP_001191593.1|	-	3.9e-54	183.9	20.2	4.8e-54	183.6	14.0	1.0	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146304277|ref|YP_001191593.1|	-	1.9e-29	102.4	34.1	3.5e-29	101.6	20.3	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OrfB_IS605	PF01385.14	gi|146304278|ref|YP_001191594.1|	-	2.8e-35	121.7	6.9	4.2e-35	121.2	4.8	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|146304278|ref|YP_001191594.1|	-	3.4e-29	100.2	0.8	1.2e-28	98.5	0.1	2.1	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
HTH_OrfB_IS605	PF12323.3	gi|146304278|ref|YP_001191594.1|	-	1.5e-10	40.1	0.3	4.4e-10	38.7	0.2	1.9	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-NADH-PPase	PF09297.6	gi|146304278|ref|YP_001191594.1|	-	4.6e-05	22.8	0.4	7.5e-05	22.1	0.3	1.3	1	0	0	1	1	1	1	NADH	pyrophosphatase	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146304278|ref|YP_001191594.1|	-	0.00042	19.5	0.2	0.19	11.1	0.0	2.4	2	0	0	2	2	2	2	TFIIB	zinc-binding
HypA	PF01155.14	gi|146304278|ref|YP_001191594.1|	-	0.014	15.0	0.0	0.027	14.1	0.0	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DNA_RNApol_7kD	PF03604.8	gi|146304278|ref|YP_001191594.1|	-	0.015	14.7	0.7	0.029	13.8	0.5	1.5	1	0	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
zf-CSL	PF05207.8	gi|146304278|ref|YP_001191594.1|	-	0.03	13.8	0.7	0.062	12.8	0.5	1.5	1	0	0	1	1	1	0	CSL	zinc	finger
Maelstrom	PF13017.1	gi|146304278|ref|YP_001191594.1|	-	0.039	13.4	0.3	4.6	6.6	0.0	2.1	2	0	0	2	2	2	0	piRNA	pathway	germ-plasm	component
DZR	PF12773.2	gi|146304278|ref|YP_001191594.1|	-	0.047	13.5	0.2	0.084	12.7	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
GP46	PF07409.7	gi|146304278|ref|YP_001191594.1|	-	0.085	12.1	0.9	0.19	11.0	0.1	1.8	2	0	0	2	2	2	0	Phage	protein	GP46
DUF1451	PF07295.6	gi|146304278|ref|YP_001191594.1|	-	0.15	11.8	6.3	1.9	8.2	0.2	3.1	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1451)
zinc_ribbon_2	PF13240.1	gi|146304278|ref|YP_001191594.1|	-	0.21	11.1	0.7	11	5.5	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|146304278|ref|YP_001191594.1|	-	0.53	9.5	3.2	11	5.3	0.2	2.2	1	1	2	3	3	3	0	zinc-ribbon	domain
Exonuc_VII_L	PF02601.10	gi|146304278|ref|YP_001191594.1|	-	0.57	9.3	4.4	0.34	10.0	0.2	2.0	2	0	0	2	2	2	0	Exonuclease	VII,	large	subunit
DUF3185	PF11381.3	gi|146304279|ref|YP_001191595.1|	-	0.071	12.8	0.1	0.071	12.8	0.1	2.8	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3185)
YlaH	PF14036.1	gi|146304279|ref|YP_001191595.1|	-	0.3	11.1	11.0	1.9	8.6	0.6	2.6	2	0	0	2	2	2	0	YlaH-like	protein
UPF0016	PF01169.14	gi|146304279|ref|YP_001191595.1|	-	1	9.5	10.7	1.4	9.1	2.5	2.7	2	1	0	2	2	2	0	Uncharacterized	protein	family	UPF0016
HAMP	PF00672.20	gi|146304279|ref|YP_001191595.1|	-	1.9	8.7	0.0	1.9	8.7	0.0	3.4	3	0	0	3	3	3	0	HAMP	domain
EamA	PF00892.15	gi|146304280|ref|YP_001191596.1|	-	2.2e-23	82.6	34.0	1.8e-13	50.6	9.7	2.5	2	1	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|146304280|ref|YP_001191596.1|	-	0.00017	21.7	26.4	0.0056	16.8	4.2	3.3	1	1	2	3	3	3	2	Multidrug	resistance	efflux	transporter
UAA	PF08449.6	gi|146304280|ref|YP_001191596.1|	-	0.0045	15.9	10.1	0.013	14.4	0.3	2.8	2	1	1	3	3	3	2	UAA	transporter	family
TRAP-gamma	PF07074.7	gi|146304280|ref|YP_001191596.1|	-	0.17	11.4	0.2	0.17	11.4	0.1	1.8	2	0	0	2	2	2	0	Translocon-associated	protein,	gamma	subunit	(TRAP-gamma)
TPT	PF03151.11	gi|146304280|ref|YP_001191596.1|	-	1.1	8.8	12.8	0.24	11.0	0.6	3.1	3	0	0	3	3	3	0	Triose-phosphate	Transporter	family
RHH_1	PF01402.16	gi|146304282|ref|YP_001191598.1|	-	0.00015	21.4	0.0	0.23	11.3	0.0	2.5	2	1	0	2	2	2	2	Ribbon-helix-helix	protein,	copG	family
RHH_1	PF01402.16	gi|146304284|ref|YP_001191600.1|	-	0.0013	18.5	0.0	0.0032	17.2	0.0	1.7	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
CheC	PF04509.7	gi|146304284|ref|YP_001191600.1|	-	0.0015	18.1	0.7	0.0036	16.9	0.5	1.6	1	0	0	1	1	1	1	CheC-like	family
Hom_end	PF05204.9	gi|146304284|ref|YP_001191600.1|	-	0.051	13.5	0.1	0.083	12.8	0.1	1.3	1	0	0	1	1	1	0	Homing	endonuclease
RHH_3	PF12651.2	gi|146304284|ref|YP_001191600.1|	-	0.054	13.2	0.0	0.12	12.1	0.0	1.6	1	0	0	1	1	1	0	Ribbon-helix-helix	domain
CheX	PF13690.1	gi|146304284|ref|YP_001191600.1|	-	0.087	12.6	0.1	0.12	12.2	0.0	1.4	1	0	0	1	1	1	0	Chemotaxis	phosphatase	CheX
PhoU_div	PF01865.11	gi|146304285|ref|YP_001191601.1|	-	1.3e-16	60.3	9.2	1.6e-16	60.1	6.4	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF47
Citrate_synt	PF00285.16	gi|146304286|ref|YP_001191602.1|	-	9.8e-136	452.1	0.0	1.1e-135	451.9	0.0	1.0	1	0	0	1	1	1	1	Citrate	synthase
DUF763	PF05559.6	gi|146304287|ref|YP_001191603.1|	-	6.8e-127	422.8	0.0	8.1e-127	422.5	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF763)
zf-H2C2	PF09337.5	gi|146304287|ref|YP_001191603.1|	-	0.00091	18.5	0.0	0.002	17.4	0.0	1.5	1	0	0	1	1	1	1	His(2)-Cys(2)	zinc	finger
Metallophos_2	PF12850.2	gi|146304288|ref|YP_001191604.1|	-	1.5e-11	44.3	0.0	2.2e-11	43.8	0.0	1.2	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
Metallophos	PF00149.23	gi|146304288|ref|YP_001191604.1|	-	6.3e-07	28.9	0.0	1e-06	28.2	0.0	1.3	1	0	0	1	1	1	1	Calcineurin-like	phosphoesterase
AhpC-TSA	PF00578.16	gi|146304289|ref|YP_001191605.1|	-	7.4e-34	116.0	0.0	9.8e-34	115.7	0.0	1.2	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.5	gi|146304289|ref|YP_001191605.1|	-	4.6e-12	45.6	0.0	6.4e-12	45.2	0.0	1.2	1	0	0	1	1	1	1	Redoxin
1-cysPrx_C	PF10417.4	gi|146304289|ref|YP_001191605.1|	-	8.7e-08	31.6	0.0	1.7e-07	30.7	0.0	1.4	1	0	0	1	1	1	1	C-terminal	domain	of	1-Cys	peroxiredoxin
AhpC-TSA_2	PF13911.1	gi|146304289|ref|YP_001191605.1|	-	0.002	18.0	0.0	0.024	14.5	0.0	2.0	1	1	1	2	2	2	1	AhpC/TSA	antioxidant	enzyme
DHH	PF01368.15	gi|146304290|ref|YP_001191606.1|	-	2e-07	30.7	0.0	3.1e-07	30.1	0.0	1.3	1	0	0	1	1	1	1	DHH	family
DHHA1	PF02272.14	gi|146304290|ref|YP_001191606.1|	-	1e-05	25.1	0.1	2.8e-05	23.7	0.1	1.7	1	0	0	1	1	1	1	DHHA1	domain
CoA_binding_2	PF13380.1	gi|146304290|ref|YP_001191606.1|	-	0.025	14.7	0.0	0.11	12.7	0.0	2.0	1	1	0	1	1	1	0	CoA	binding	domain
UDPG_MGDP_dh_C	PF03720.10	gi|146304290|ref|YP_001191606.1|	-	0.084	13.0	0.1	0.51	10.5	0.0	2.3	2	0	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
Isochorismatase	PF00857.15	gi|146304291|ref|YP_001191607.1|	-	1.9e-43	148.3	0.0	2.2e-43	148.2	0.0	1.0	1	0	0	1	1	1	1	Isochorismatase	family
MacB_PCD	PF12704.2	gi|146304292|ref|YP_001191608.1|	-	5.2e-24	85.1	1.5	5.2e-24	85.1	1.1	1.8	2	0	0	2	2	2	1	MacB-like	periplasmic	core	domain
FtsX	PF02687.16	gi|146304292|ref|YP_001191608.1|	-	6.6e-21	74.3	10.5	6.6e-21	74.3	7.2	2.3	2	0	0	2	2	2	2	FtsX-like	permease	family
NPCBM_assoc	PF10633.4	gi|146304293|ref|YP_001191609.1|	-	2e-09	37.3	22.6	4.5e-05	23.4	0.1	7.8	8	0	0	8	8	8	4	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF3324	PF11797.3	gi|146304293|ref|YP_001191609.1|	-	0.0054	16.4	1.6	0.3	10.7	0.0	3.7	4	0	0	4	4	4	1	Protein	of	unknown	function	C-terminal	(DUF3324)
Rifin_STEVOR	PF02009.11	gi|146304293|ref|YP_001191609.1|	-	0.027	14.1	0.0	0.04	13.5	0.0	1.2	1	0	0	1	1	1	0	Rifin/stevor	family
Wzt_C	PF14524.1	gi|146304293|ref|YP_001191609.1|	-	0.035	13.8	2.9	1.6	8.4	0.1	3.5	3	0	0	3	3	3	0	Wzt	C-terminal	domain
ABC_tran	PF00005.22	gi|146304294|ref|YP_001191610.1|	-	7.7e-35	120.1	0.0	1e-34	119.7	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304294|ref|YP_001191610.1|	-	3e-13	50.3	0.0	1.9e-07	31.3	0.0	2.1	1	1	1	2	2	2	2	AAA	domain
SMC_N	PF02463.14	gi|146304294|ref|YP_001191610.1|	-	9.3e-07	28.3	0.5	6.3e-05	22.3	0.3	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|146304294|ref|YP_001191610.1|	-	2.1e-06	27.0	0.3	0.008	15.2	0.0	2.2	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_10	PF12846.2	gi|146304294|ref|YP_001191610.1|	-	2.8e-06	26.9	0.2	0.018	14.5	0.0	2.1	2	0	0	2	2	2	2	AAA-like	domain
AAA_22	PF13401.1	gi|146304294|ref|YP_001191610.1|	-	2.3e-05	24.5	0.8	0.00043	20.4	0.6	2.1	1	1	0	1	1	1	1	AAA	domain
SRP54	PF00448.17	gi|146304294|ref|YP_001191610.1|	-	8e-05	22.1	0.5	0.023	14.1	0.0	2.2	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
AAA_16	PF13191.1	gi|146304294|ref|YP_001191610.1|	-	0.00012	22.1	0.2	0.00042	20.3	0.1	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146304294|ref|YP_001191610.1|	-	0.00027	20.4	0.2	0.0005	19.5	0.1	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|146304294|ref|YP_001191610.1|	-	0.00029	21.2	0.4	0.00051	20.4	0.3	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|146304294|ref|YP_001191610.1|	-	0.0021	17.5	0.0	0.012	15.0	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
Arch_ATPase	PF01637.13	gi|146304294|ref|YP_001191610.1|	-	0.0022	17.7	0.1	0.0071	16.0	0.0	1.8	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_30	PF13604.1	gi|146304294|ref|YP_001191610.1|	-	0.0026	17.3	0.1	0.0065	16.0	0.0	1.6	2	0	0	2	2	2	1	AAA	domain
DUF258	PF03193.11	gi|146304294|ref|YP_001191610.1|	-	0.0035	16.5	0.1	0.0052	15.9	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
MobB	PF03205.9	gi|146304294|ref|YP_001191610.1|	-	0.0084	15.8	0.1	0.02	14.6	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|146304294|ref|YP_001191610.1|	-	0.012	15.4	1.1	0.03	14.2	0.8	1.7	1	1	0	1	1	1	0	AAA	domain
SbcCD_C	PF13558.1	gi|146304294|ref|YP_001191610.1|	-	0.013	15.4	0.1	0.099	12.5	0.0	2.1	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_17	PF13207.1	gi|146304294|ref|YP_001191610.1|	-	0.013	16.3	1.5	0.027	15.2	1.0	1.8	1	1	0	1	1	1	0	AAA	domain
IstB_IS21	PF01695.12	gi|146304294|ref|YP_001191610.1|	-	0.026	13.9	0.1	0.096	12.1	0.0	1.8	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
AAA_18	PF13238.1	gi|146304294|ref|YP_001191610.1|	-	0.029	14.6	0.9	0.14	12.4	0.7	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|146304294|ref|YP_001191610.1|	-	0.036	13.6	0.2	0.32	10.5	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|146304294|ref|YP_001191610.1|	-	0.036	13.9	0.0	0.063	13.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|146304294|ref|YP_001191610.1|	-	0.041	13.5	0.0	0.066	12.8	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA	PF00004.24	gi|146304294|ref|YP_001191610.1|	-	0.047	13.8	0.1	2.5	8.2	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
ATP-synt_ab	PF00006.20	gi|146304294|ref|YP_001191610.1|	-	0.053	13.0	0.0	0.075	12.5	0.0	1.2	1	0	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
NB-ARC	PF00931.17	gi|146304294|ref|YP_001191610.1|	-	0.054	12.3	0.4	0.12	11.2	0.2	1.6	2	0	0	2	2	2	0	NB-ARC	domain
T2SE	PF00437.15	gi|146304294|ref|YP_001191610.1|	-	0.057	12.3	0.3	0.1	11.4	0.2	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
G-alpha	PF00503.15	gi|146304294|ref|YP_001191610.1|	-	0.077	11.6	0.0	0.1	11.2	0.0	1.1	1	0	0	1	1	1	0	G-protein	alpha	subunit
ResIII	PF04851.10	gi|146304294|ref|YP_001191610.1|	-	0.096	12.5	0.1	0.16	11.7	0.1	1.6	1	1	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|146304294|ref|YP_001191610.1|	-	0.1	12.0	0.0	0.15	11.5	0.0	1.4	1	1	0	1	1	1	0	DEAD/DEAH	box	helicase
Pox_A32	PF04665.7	gi|146304294|ref|YP_001191610.1|	-	0.12	11.6	0.0	0.2	10.8	0.0	1.4	1	0	0	1	1	1	0	Poxvirus	A32	protein
T4SS-DNA_transf	PF02534.9	gi|146304294|ref|YP_001191610.1|	-	0.12	10.9	0.1	0.18	10.3	0.1	1.2	1	0	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
EamA	PF00892.15	gi|146304295|ref|YP_001191611.1|	-	4.6e-17	62.2	30.7	2.3e-11	43.8	5.8	2.4	2	0	0	2	2	2	2	EamA-like	transporter	family
EmrE	PF13536.1	gi|146304295|ref|YP_001191611.1|	-	0.004	17.3	25.8	0.024	14.8	5.4	3.7	1	1	1	3	3	3	2	Multidrug	resistance	efflux	transporter
TPR_11	PF13414.1	gi|146304296|ref|YP_001191612.1|	-	8.7e-30	102.1	11.7	3.4e-12	45.8	1.4	4.2	4	0	0	4	4	4	3	TPR	repeat
TPR_2	PF07719.12	gi|146304296|ref|YP_001191612.1|	-	2.2e-21	73.9	15.6	0.0021	17.8	0.0	7.2	7	0	0	7	7	7	6	Tetratricopeptide	repeat
TPR_16	PF13432.1	gi|146304296|ref|YP_001191612.1|	-	8.1e-21	74.1	8.9	1.8e-05	25.2	0.8	5.0	3	1	2	5	5	5	5	Tetratricopeptide	repeat
TPR_17	PF13431.1	gi|146304296|ref|YP_001191612.1|	-	1.1e-15	56.3	7.3	0.00097	19.1	0.1	5.4	5	0	0	5	5	5	4	Tetratricopeptide	repeat
TPR_1	PF00515.23	gi|146304296|ref|YP_001191612.1|	-	1.5e-15	56.0	15.7	4e-05	23.0	0.1	6.7	7	0	0	7	7	7	4	Tetratricopeptide	repeat
TPR_19	PF14559.1	gi|146304296|ref|YP_001191612.1|	-	1.8e-12	47.3	18.4	3.6e-05	24.0	0.1	4.6	3	1	2	5	5	5	3	Tetratricopeptide	repeat
TPR_8	PF13181.1	gi|146304296|ref|YP_001191612.1|	-	1.9e-12	45.9	22.3	0.0013	18.3	0.4	6.3	6	0	0	6	6	6	3	Tetratricopeptide	repeat
TPR_12	PF13424.1	gi|146304296|ref|YP_001191612.1|	-	4.2e-11	42.6	11.3	1.2e-05	25.1	0.3	4.4	2	1	2	4	4	4	3	Tetratricopeptide	repeat
TPR_14	PF13428.1	gi|146304296|ref|YP_001191612.1|	-	4.9e-10	39.1	9.9	1.7	9.5	0.1	7.3	1	1	7	8	8	8	3	Tetratricopeptide	repeat
Apc3	PF12895.2	gi|146304296|ref|YP_001191612.1|	-	4.4e-07	29.9	6.4	0.14	12.3	0.0	3.9	2	1	0	3	3	3	3	Anaphase-promoting	complex,	cyclosome,	subunit	3
TPR_9	PF13371.1	gi|146304296|ref|YP_001191612.1|	-	6.1e-07	29.1	6.4	0.12	12.2	0.2	5.6	1	1	4	5	5	5	3	Tetratricopeptide	repeat
TPR_7	PF13176.1	gi|146304296|ref|YP_001191612.1|	-	2.8e-06	26.7	5.0	0.76	9.7	0.0	4.8	4	1	1	5	5	5	2	Tetratricopeptide	repeat
TPR_6	PF13174.1	gi|146304296|ref|YP_001191612.1|	-	4.4e-06	26.7	6.5	31	5.3	0.0	6.5	6	0	0	6	6	6	0	Tetratricopeptide	repeat
NARP1	PF12569.3	gi|146304296|ref|YP_001191612.1|	-	5.6e-05	22.0	3.6	0.0012	17.7	0.2	3.3	3	1	0	3	3	3	1	NMDA	receptor-regulated	protein	1
DUF3366	PF11846.3	gi|146304296|ref|YP_001191612.1|	-	0.00078	19.3	0.1	0.0067	16.3	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF3366)
BTAD	PF03704.12	gi|146304296|ref|YP_001191612.1|	-	0.0023	18.2	1.2	2	8.7	0.0	3.5	1	1	1	3	3	3	1	Bacterial	transcriptional	activator	domain
TPR_4	PF07721.9	gi|146304296|ref|YP_001191612.1|	-	0.0038	17.5	0.9	54	4.6	0.1	4.0	3	0	0	3	3	3	0	Tetratricopeptide	repeat
MIT	PF04212.13	gi|146304296|ref|YP_001191612.1|	-	0.0039	17.0	2.0	0.02	14.7	0.2	3.1	4	0	0	4	4	4	1	MIT	(microtubule	interacting	and	transport)	domain
FAT	PF02259.18	gi|146304296|ref|YP_001191612.1|	-	0.012	14.5	2.3	3.5	6.5	0.0	3.1	1	1	1	3	3	3	0	FAT	domain
TPR_21	PF09976.4	gi|146304296|ref|YP_001191612.1|	-	0.019	14.9	4.2	3.5	7.5	0.1	3.9	4	1	1	5	5	4	0	Tetratricopeptide	repeat
HrpB1_HrpK	PF09613.5	gi|146304296|ref|YP_001191612.1|	-	0.021	14.3	0.0	0.5	9.8	0.0	2.3	2	0	0	2	2	2	0	Bacterial	type	III	secretion	protein	(HrpB1_HrpK)
Coatomer_E	PF04733.9	gi|146304296|ref|YP_001191612.1|	-	0.061	12.5	0.5	0.58	9.3	0.3	2.3	1	1	0	1	1	1	0	Coatomer	epsilon	subunit
Type_III_YscG	PF09477.5	gi|146304296|ref|YP_001191612.1|	-	0.078	13.0	0.1	0.83	9.7	0.0	2.3	1	1	1	2	2	2	0	Bacterial	type	II	secretion	system	chaperone	protein	(type_III_yscG)
PIN	PF01850.16	gi|146304298|ref|YP_001191614.1|	-	8.5e-16	58.3	0.0	1e-15	58.1	0.0	1.0	1	0	0	1	1	1	1	PIN	domain
DUF4411	PF14367.1	gi|146304298|ref|YP_001191614.1|	-	0.00014	21.6	0.1	0.0045	16.7	0.0	2.1	1	1	0	2	2	2	1	Domain	of	unknown	function	(DUF4411)
Podovirus_Gp16	PF05894.7	gi|146304298|ref|YP_001191614.1|	-	0.037	13.3	0.2	0.046	13.0	0.1	1.0	1	0	0	1	1	1	0	Podovirus	DNA	encapsidation	protein	(Gp16)
Antitoxin-MazE	PF04014.13	gi|146304299|ref|YP_001191615.1|	-	2.2e-11	43.2	0.0	3.1e-11	42.7	0.0	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
NTP_transf_2	PF01909.18	gi|146304300|ref|YP_001191616.1|	-	7.5e-08	32.6	0.4	8.8e-08	32.3	0.3	1.2	1	1	0	1	1	1	1	Nucleotidyltransferase	domain
p12I	PF12233.3	gi|146304301|ref|YP_001191617.1|	-	0.067	13.4	0.5	0.091	13.0	0.3	1.2	1	0	0	1	1	1	0	Human	adult	T	cell	leukemia/lymphoma	virus	protein
Ammonium_transp	PF00909.16	gi|146304302|ref|YP_001191618.1|	-	2.1e-95	319.5	30.3	2.5e-95	319.3	21.0	1.0	1	0	0	1	1	1	1	Ammonium	Transporter	Family
Na_Ca_ex	PF01699.19	gi|146304303|ref|YP_001191619.1|	-	5.2e-26	90.9	23.9	1.3e-15	57.2	3.7	2.6	2	1	0	2	2	2	2	Sodium/calcium	exchanger	protein
DUF202	PF02656.10	gi|146304304|ref|YP_001191620.1|	-	1.9e-17	63.2	1.0	1.9e-17	63.2	0.7	2.0	1	1	1	2	2	2	1	Domain	of	unknown	function	(DUF202)
Claudin_2	PF13903.1	gi|146304304|ref|YP_001191620.1|	-	6.8e-05	22.6	7.4	0.00012	21.7	5.1	1.4	1	1	0	1	1	1	1	PMP-22/EMP/MP20/Claudin	tight	junction
SdpI	PF13630.1	gi|146304304|ref|YP_001191620.1|	-	0.0052	16.4	6.8	0.021	14.5	0.8	2.1	2	0	0	2	2	2	2	SdpI/YhfL	protein	family
Rhomboid	PF01694.17	gi|146304304|ref|YP_001191620.1|	-	0.0088	16.0	4.1	0.011	15.7	2.8	1.2	1	1	0	1	1	1	1	Rhomboid	family
Arif-1	PF06770.6	gi|146304304|ref|YP_001191620.1|	-	0.074	12.4	2.9	0.086	12.1	2.0	1.1	1	0	0	1	1	1	0	Actin-rearrangement-inducing	factor	(Arif-1)
Clc-like	PF07062.7	gi|146304304|ref|YP_001191620.1|	-	0.12	11.5	1.9	0.21	10.8	1.3	1.5	1	1	0	1	1	1	0	Clc-like
DUF2910	PF11139.3	gi|146304304|ref|YP_001191620.1|	-	0.15	11.1	7.2	0.19	10.8	4.2	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2910)
DUF373	PF04123.8	gi|146304304|ref|YP_001191620.1|	-	0.3	10.0	6.8	0.33	9.9	4.7	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF373)
DUF4282	PF14110.1	gi|146304304|ref|YP_001191620.1|	-	8.3	6.6	9.7	9.8	6.4	4.3	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4282)
CCG	PF02754.11	gi|146304305|ref|YP_001191621.1|	-	4.2e-27	93.9	0.1	1.7e-14	53.6	0.1	2.4	2	0	0	2	2	2	2	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|146304306|ref|YP_001191622.1|	-	5.7e-10	39.0	7.1	8.9e-10	38.4	4.9	1.3	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146304306|ref|YP_001191622.1|	-	6.5e-10	39.2	4.3	1.1e-09	38.5	3.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146304306|ref|YP_001191622.1|	-	2.8e-07	30.6	7.1	6.1e-07	29.6	5.0	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304306|ref|YP_001191622.1|	-	1.8e-05	25.0	2.9	0.0069	16.7	0.2	2.3	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304306|ref|YP_001191622.1|	-	2.2e-05	24.7	6.0	4.1e-05	23.8	4.2	1.5	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146304306|ref|YP_001191622.1|	-	0.00025	21.7	3.3	0.015	16.0	0.4	2.3	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_10	PF13237.1	gi|146304306|ref|YP_001191622.1|	-	0.00087	19.0	11.6	0.011	15.4	8.7	2.0	1	1	2	3	3	3	3	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146304306|ref|YP_001191622.1|	-	0.0051	16.6	9.5	0.28	11.1	1.0	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304306|ref|YP_001191622.1|	-	0.014	15.6	12.0	0.64	10.5	1.5	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146304306|ref|YP_001191622.1|	-	0.02	14.7	8.9	0.069	13.0	6.2	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146304306|ref|YP_001191622.1|	-	0.069	12.7	12.7	0.16	11.6	1.5	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
DUF1062	PF06353.7	gi|146304306|ref|YP_001191622.1|	-	0.13	12.4	0.0	1	9.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1062)
IZUMO	PF15005.1	gi|146304306|ref|YP_001191622.1|	-	0.17	11.9	3.9	0.7	9.9	0.5	2.3	2	0	0	2	2	2	0	Izumo	sperm-egg	fusion
Fer4_20	PF14691.1	gi|146304306|ref|YP_001191622.1|	-	0.26	10.9	6.3	0.15	11.7	0.4	2.1	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
CRM1_C	PF08767.6	gi|146304307|ref|YP_001191623.1|	-	0.039	12.8	0.1	0.069	12.0	0.1	1.4	1	0	0	1	1	1	0	CRM1	C	terminal
Pyr_redox_2	PF07992.9	gi|146304308|ref|YP_001191624.1|	-	1.4e-15	57.7	0.0	2.4e-15	56.9	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.14	gi|146304308|ref|YP_001191624.1|	-	1.3e-09	37.6	0.1	2.5e-07	30.0	0.1	2.3	1	1	1	2	2	2	2	FAD	binding	domain
HI0933_like	PF03486.9	gi|146304308|ref|YP_001191624.1|	-	8.3e-09	34.4	0.0	0.002	16.7	0.0	2.1	1	1	1	2	2	2	2	HI0933-like	protein
FAD_binding_2	PF00890.19	gi|146304308|ref|YP_001191624.1|	-	1.3e-08	34.0	0.0	3e-06	26.3	0.0	2.1	1	1	1	2	2	2	2	FAD	binding	domain
Pyr_redox	PF00070.22	gi|146304308|ref|YP_001191624.1|	-	4.9e-07	30.0	0.1	0.0002	21.7	0.0	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304308|ref|YP_001191624.1|	-	8.8e-07	28.8	0.0	2e-06	27.7	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_3	PF13738.1	gi|146304308|ref|YP_001191624.1|	-	1e-06	28.9	0.0	0.002	18.2	0.0	2.3	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_oxidored	PF12831.2	gi|146304308|ref|YP_001191624.1|	-	1.4e-05	24.3	0.1	9.3e-05	21.6	0.0	2.1	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
DAO	PF01266.19	gi|146304308|ref|YP_001191624.1|	-	1.6e-05	23.9	0.1	0.0011	18.0	0.0	2.7	3	0	0	3	3	3	1	FAD	dependent	oxidoreductase
GIDA	PF01134.17	gi|146304308|ref|YP_001191624.1|	-	5.1e-05	22.3	0.0	0.028	13.2	0.0	2.3	2	0	0	2	2	2	2	Glucose	inhibited	division	protein	A
Amino_oxidase	PF01593.19	gi|146304308|ref|YP_001191624.1|	-	0.00079	18.6	0.1	0.15	11.0	0.0	2.2	2	0	0	2	2	2	2	Flavin	containing	amine	oxidoreductase
Thi4	PF01946.12	gi|146304308|ref|YP_001191624.1|	-	0.0021	17.1	0.0	0.0033	16.5	0.0	1.3	1	0	0	1	1	1	1	Thi4	family
CPSase_L_chain	PF00289.17	gi|146304308|ref|YP_001191624.1|	-	0.0036	17.3	0.0	0.0072	16.4	0.0	1.5	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
AlaDh_PNT_C	PF01262.16	gi|146304308|ref|YP_001191624.1|	-	0.013	15.0	0.1	0.2	11.2	0.0	2.4	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|146304308|ref|YP_001191624.1|	-	0.03	13.2	0.0	0.07	12.0	0.0	1.6	1	1	1	2	2	2	0	Lycopene	cyclase	protein
NAD_binding_9	PF13454.1	gi|146304308|ref|YP_001191624.1|	-	0.078	12.7	0.0	1.4	8.7	0.0	2.6	3	0	0	3	3	3	0	FAD-NAD(P)-binding
NAD_binding_7	PF13241.1	gi|146304308|ref|YP_001191624.1|	-	0.097	12.9	0.0	0.21	11.8	0.0	1.7	1	0	0	1	1	1	0	Putative	NAD(P)-binding
CCG	PF02754.11	gi|146304309|ref|YP_001191625.1|	-	4.3e-08	33.0	0.0	1.5e-06	28.1	0.0	3.0	2	1	0	2	2	2	1	Cysteine-rich	domain
Fer4_8	PF13183.1	gi|146304310|ref|YP_001191626.1|	-	6.2e-10	38.9	6.8	1.1e-09	38.1	4.7	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146304310|ref|YP_001191626.1|	-	8.9e-09	35.5	7.1	8.9e-09	35.5	4.9	1.6	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146304310|ref|YP_001191626.1|	-	2.3e-06	27.9	2.0	0.071	13.5	0.0	2.5	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146304310|ref|YP_001191626.1|	-	5.5e-06	26.5	8.8	1.2e-05	25.5	6.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146304310|ref|YP_001191626.1|	-	2.1e-05	24.1	8.2	0.0061	16.4	0.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146304310|ref|YP_001191626.1|	-	0.0001	22.0	10.2	0.00029	20.5	7.1	1.7	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304310|ref|YP_001191626.1|	-	0.0008	19.7	10.3	0.01	16.2	8.1	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146304310|ref|YP_001191626.1|	-	0.0013	18.9	11.0	0.0022	18.1	0.8	2.2	2	0	0	2	2	2	1	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146304310|ref|YP_001191626.1|	-	0.0092	15.8	8.1	0.096	12.5	6.0	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_20	PF14691.1	gi|146304310|ref|YP_001191626.1|	-	0.011	15.3	5.5	0.029	13.9	0.2	2.2	1	1	1	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
Fer4_16	PF13484.1	gi|146304310|ref|YP_001191626.1|	-	0.021	15.5	10.8	0.098	13.4	7.6	2.1	1	1	0	1	1	1	0	4Fe-4S	double	cluster	binding	domain
Fer4	PF00037.22	gi|146304310|ref|YP_001191626.1|	-	0.28	10.8	16.9	0.12	11.9	1.9	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146304310|ref|YP_001191626.1|	-	0.54	10.2	13.0	2.6	8.0	1.4	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_13	PF13370.1	gi|146304310|ref|YP_001191626.1|	-	1.3	9.4	7.1	2.4	8.6	0.1	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
DUF1660	PF07874.6	gi|146304310|ref|YP_001191626.1|	-	2.5	8.4	6.4	0.3	11.3	0.7	2.2	2	0	0	2	2	2	0	Prophage	protein	(DUF1660)
TusA	PF01206.12	gi|146304311|ref|YP_001191627.1|	-	3.7e-25	87.3	0.0	4.2e-25	87.1	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
SH3_3	PF08239.6	gi|146304311|ref|YP_001191627.1|	-	0.12	12.5	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	SH3	domain
DrsE_2	PF13686.1	gi|146304312|ref|YP_001191628.1|	-	1.4e-29	102.7	2.7	3.8e-29	101.3	1.9	1.6	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.10	gi|146304312|ref|YP_001191628.1|	-	3.4e-08	33.5	0.1	1.2e-07	31.7	0.1	1.7	1	1	0	1	1	1	1	DsrE/DsrF-like	family
DrsE	PF02635.10	gi|146304313|ref|YP_001191629.1|	-	5.9e-17	61.8	0.0	6.8e-17	61.6	0.0	1.0	1	0	0	1	1	1	1	DsrE/DsrF-like	family
DrsE_2	PF13686.1	gi|146304313|ref|YP_001191629.1|	-	2.7e-13	49.9	0.5	5.5e-06	26.2	0.1	2.0	1	1	1	2	2	2	2	DsrE/DsrF/DrsH-like	family
Pyr_redox_2	PF07992.9	gi|146304314|ref|YP_001191630.1|	-	1e-32	113.6	1.0	2.9e-32	112.2	0.7	2.4	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146304314|ref|YP_001191630.1|	-	3.4e-17	62.6	6.4	6e-13	49.0	0.1	2.8	3	0	0	3	3	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146304314|ref|YP_001191630.1|	-	1.6e-14	53.8	0.0	4.4e-14	52.4	0.0	1.8	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.17	gi|146304314|ref|YP_001191630.1|	-	1.5e-10	40.5	3.7	0.00029	19.8	0.1	3.1	3	0	0	3	3	3	2	Glucose	inhibited	division	protein	A
DAO	PF01266.19	gi|146304314|ref|YP_001191630.1|	-	2.4e-10	39.8	6.5	0.00019	20.4	0.0	2.9	3	0	0	3	3	3	2	FAD	dependent	oxidoreductase
Pyr_redox_3	PF13738.1	gi|146304314|ref|YP_001191630.1|	-	6.9e-10	39.3	0.0	1.8e-09	37.9	0.1	1.7	2	0	0	2	2	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_2	PF00890.19	gi|146304314|ref|YP_001191630.1|	-	1.4e-08	34.0	6.8	4.2e-06	25.8	0.6	3.3	4	0	0	4	4	4	2	FAD	binding	domain
FAD_oxidored	PF12831.2	gi|146304314|ref|YP_001191630.1|	-	1.6e-08	34.0	1.1	3.2e-05	23.1	0.1	2.1	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
FAD_binding_3	PF01494.14	gi|146304314|ref|YP_001191630.1|	-	4.5e-08	32.5	4.2	1.7e-05	24.0	0.7	2.2	2	0	0	2	2	2	2	FAD	binding	domain
Trp_halogenase	PF04820.9	gi|146304314|ref|YP_001191630.1|	-	2.4e-07	29.7	1.3	3.4e-06	25.9	0.0	2.3	2	0	0	2	2	2	1	Tryptophan	halogenase
NAD_binding_8	PF13450.1	gi|146304314|ref|YP_001191630.1|	-	2.3e-06	27.5	7.5	0.00011	22.1	0.7	3.0	2	1	1	3	3	3	2	NAD(P)-binding	Rossmann-like	domain
Thi4	PF01946.12	gi|146304314|ref|YP_001191630.1|	-	3.3e-06	26.3	4.0	0.00037	19.6	1.0	2.7	2	1	0	2	2	2	2	Thi4	family
HI0933_like	PF03486.9	gi|146304314|ref|YP_001191630.1|	-	2.9e-05	22.7	4.9	0.0005	18.6	0.4	2.7	3	0	0	3	3	3	2	HI0933-like	protein
3HCDH_N	PF02737.13	gi|146304314|ref|YP_001191630.1|	-	0.00012	21.8	1.6	0.014	15.0	0.0	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_7	PF13241.1	gi|146304314|ref|YP_001191630.1|	-	0.00097	19.3	0.3	1.7	8.9	0.1	2.4	2	0	0	2	2	2	2	Putative	NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|146304314|ref|YP_001191630.1|	-	0.0014	18.2	0.6	0.053	13.0	0.0	2.3	2	0	0	2	2	2	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
NAD_binding_9	PF13454.1	gi|146304314|ref|YP_001191630.1|	-	0.004	16.9	2.0	0.19	11.4	0.1	3.3	2	1	0	2	2	2	1	FAD-NAD(P)-binding
GDI	PF00996.13	gi|146304314|ref|YP_001191630.1|	-	0.0068	14.7	0.1	0.012	13.9	0.0	1.4	1	0	0	1	1	1	1	GDP	dissociation	inhibitor
NAD_Gly3P_dh_N	PF01210.18	gi|146304314|ref|YP_001191630.1|	-	0.0076	16.0	1.1	2	8.0	0.2	2.3	2	0	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Lycopene_cycl	PF05834.7	gi|146304314|ref|YP_001191630.1|	-	0.013	14.4	1.3	1.7	7.4	0.1	2.2	2	0	0	2	2	2	0	Lycopene	cyclase	protein
Herpes_UL1	PF05259.6	gi|146304314|ref|YP_001191630.1|	-	0.022	14.1	0.2	0.22	10.9	0.0	2.4	2	1	1	3	3	2	0	Herpesvirus	glycoprotein	L
K_oxygenase	PF13434.1	gi|146304314|ref|YP_001191630.1|	-	0.024	13.5	2.0	0.14	11.0	0.0	2.6	3	0	0	3	3	3	0	L-lysine	6-monooxygenase	(NADPH-requiring)
ApbA	PF02558.11	gi|146304314|ref|YP_001191630.1|	-	0.14	11.5	1.8	8.6	5.7	0.6	2.7	3	0	0	3	3	3	0	Ketopantoate	reductase	PanE/ApbA
TrkA_N	PF02254.13	gi|146304314|ref|YP_001191630.1|	-	0.23	11.4	2.0	4.4	7.3	0.2	2.5	2	0	0	2	2	2	0	TrkA-N	domain
Thioredoxin_3	PF13192.1	gi|146304316|ref|YP_001191632.1|	-	9.8e-15	54.1	0.3	1.8e-14	53.2	0.1	1.6	2	0	0	2	2	2	1	Thioredoxin	domain
DUF836	PF05768.9	gi|146304316|ref|YP_001191632.1|	-	9.8e-05	22.5	0.0	0.00017	21.8	0.0	1.4	1	0	0	1	1	1	1	Glutaredoxin-like	domain	(DUF836)
Thioredoxin	PF00085.15	gi|146304316|ref|YP_001191632.1|	-	0.0012	18.4	0.1	0.0081	15.8	0.0	2.2	2	1	0	2	2	2	1	Thioredoxin
Glutaredoxin	PF00462.19	gi|146304316|ref|YP_001191632.1|	-	0.0013	18.6	0.1	0.0027	17.6	0.1	1.6	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_2	PF13098.1	gi|146304316|ref|YP_001191632.1|	-	0.0059	16.7	0.3	0.021	15.0	0.2	1.8	1	1	0	1	1	1	1	Thioredoxin-like	domain
PHB_acc_N	PF07879.6	gi|146304316|ref|YP_001191632.1|	-	0.015	14.9	0.0	0.76	9.5	0.1	2.5	1	1	1	2	2	2	0	PHB/PHA	accumulation	regulator	DNA-binding	domain
Thioredoxin_9	PF14595.1	gi|146304316|ref|YP_001191632.1|	-	0.11	12.0	0.0	0.18	11.3	0.0	1.2	1	0	0	1	1	1	0	Thioredoxin
UPF0278	PF08745.6	gi|146304317|ref|YP_001191633.1|	-	0.0001	21.6	0.0	0.00014	21.2	0.0	1.2	1	0	0	1	1	1	1	UPF0278	family
YXWGXW	PF12779.2	gi|146304317|ref|YP_001191633.1|	-	0.011	15.5	0.1	0.02	14.7	0.0	1.3	1	0	0	1	1	1	0	YXWGXW	repeat	(2	copies)
PID_2	PF14719.1	gi|146304317|ref|YP_001191633.1|	-	0.014	15.0	0.0	0.016	14.8	0.0	1.1	1	0	0	1	1	1	0	Phosphotyrosine	interaction	domain	(PTB/PID)
DUF1641	PF07849.6	gi|146304318|ref|YP_001191634.1|	-	2e-13	49.7	0.3	1.2e-12	47.1	0.0	2.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1641)
MgtE_N	PF03448.12	gi|146304318|ref|YP_001191634.1|	-	0.00024	21.3	30.8	1.1	9.5	2.6	6.7	3	2	2	5	5	5	4	MgtE	intracellular	N	domain
Imm16	PF15565.1	gi|146304318|ref|YP_001191634.1|	-	0.0066	16.2	7.0	0.019	14.8	0.7	3.9	2	2	0	4	4	4	1	Immunity	protein	16
Avirulence	PF03377.8	gi|146304318|ref|YP_001191634.1|	-	0.066	11.9	0.7	0.31	9.7	0.2	1.9	1	1	1	2	2	2	0	Xanthomonas	avirulence	protein,	Avr/PthA
tRNA-synt_His	PF13393.1	gi|146304318|ref|YP_001191634.1|	-	2.4	7.1	5.1	8.7	5.2	0.0	2.9	3	0	0	3	3	3	0	Histidyl-tRNA	synthetase
Hist_deacetyl	PF00850.14	gi|146304319|ref|YP_001191635.1|	-	7.4e-54	183.1	0.0	9.5e-54	182.7	0.0	1.1	1	0	0	1	1	1	1	Histone	deacetylase	domain
Peptidase_M23	PF01551.17	gi|146304320|ref|YP_001191636.1|	-	0.061	13.3	0.0	0.12	12.4	0.0	1.6	1	0	0	1	1	1	0	Peptidase	family	M23
Radical_SAM	PF04055.16	gi|146304321|ref|YP_001191637.1|	-	3e-13	50.2	1.3	3.4e-13	50.0	0.0	1.6	2	0	0	2	2	2	1	Radical	SAM	superfamily
Toxin_42	PF15522.1	gi|146304321|ref|YP_001191637.1|	-	0.02	14.0	0.0	0.032	13.4	0.0	1.2	1	0	0	1	1	1	0	Putative	toxin	42
Fer4_12	PF13353.1	gi|146304321|ref|YP_001191637.1|	-	0.1	12.7	0.0	0.22	11.6	0.0	1.5	1	0	0	1	1	1	0	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|146304322|ref|YP_001191638.1|	-	6.6e-10	39.4	0.0	1.1e-09	38.7	0.0	1.3	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146304322|ref|YP_001191638.1|	-	0.0015	18.6	0.0	0.0024	18.0	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
BPL_LplA_LipB	PF03099.14	gi|146304323|ref|YP_001191639.1|	-	4.9e-12	45.9	0.0	9.2e-12	45.0	0.0	1.5	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
Lip_prot_lig_C	PF10437.4	gi|146304323|ref|YP_001191639.1|	-	0.005	16.4	0.1	0.014	15.0	0.0	1.8	2	0	0	2	2	2	1	Bacterial	lipoate	protein	ligase	C-terminus
DsbD_2	PF13386.1	gi|146304324|ref|YP_001191640.1|	-	0.0024	17.6	3.0	0.0024	17.6	2.1	2.1	1	1	1	2	2	2	1	Cytochrome	C	biogenesis	protein	transmembrane	region
DctQ	PF04290.7	gi|146304324|ref|YP_001191640.1|	-	0.24	11.1	13.6	7.1	6.3	2.8	3.1	1	1	1	2	2	2	0	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
CorA	PF01544.13	gi|146304324|ref|YP_001191640.1|	-	0.36	9.8	10.5	1.6	7.6	0.3	2.3	1	1	1	2	2	2	0	CorA-like	Mg2+	transporter	protein
Srg	PF02118.16	gi|146304324|ref|YP_001191640.1|	-	2	7.7	8.1	0.19	11.1	0.3	2.1	1	1	1	2	2	2	0	Srg	family	chemoreceptor
YwiC	PF14256.1	gi|146304324|ref|YP_001191640.1|	-	2.8	8.0	6.6	0.52	10.4	0.6	2.2	2	0	0	2	2	2	0	YwiC-like	protein
CoA_binding_2	PF13380.1	gi|146304325|ref|YP_001191641.1|	-	3.1e-34	117.6	0.0	3.5e-34	117.4	0.0	1.0	1	0	0	1	1	1	1	CoA	binding	domain
CoA_binding	PF02629.14	gi|146304325|ref|YP_001191641.1|	-	0.00014	22.3	0.0	0.00018	21.9	0.0	1.2	1	0	0	1	1	1	1	CoA	binding	domain
TrmB	PF01978.14	gi|146304326|ref|YP_001191642.1|	-	7.9e-09	35.1	0.0	1e-08	34.7	0.0	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304326|ref|YP_001191642.1|	-	7.1e-06	25.6	0.0	9.6e-06	25.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|146304326|ref|YP_001191642.1|	-	7.3e-06	25.5	0.0	1e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|146304326|ref|YP_001191642.1|	-	1.8e-05	24.2	0.1	2.6e-05	23.7	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_27	PF13463.1	gi|146304326|ref|YP_001191642.1|	-	2.5e-05	24.5	0.0	3.3e-05	24.1	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_24	PF13412.1	gi|146304326|ref|YP_001191642.1|	-	0.00031	20.0	0.1	0.00055	19.2	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|146304326|ref|YP_001191642.1|	-	0.00049	19.8	0.0	0.00078	19.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.7	gi|146304326|ref|YP_001191642.1|	-	0.001	18.6	0.0	0.0015	18.1	0.0	1.3	1	0	0	1	1	1	1	HTH	domain
DUF387	PF04079.11	gi|146304326|ref|YP_001191642.1|	-	0.0025	17.2	0.0	0.0029	17.0	0.0	1.1	1	0	0	1	1	1	1	Putative	transcriptional	regulators	(Ypuh-like)
HTH_36	PF13730.1	gi|146304326|ref|YP_001191642.1|	-	0.0035	17.4	0.0	0.0085	16.1	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|146304326|ref|YP_001191642.1|	-	0.0095	15.5	0.0	0.015	14.8	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
GntR	PF00392.16	gi|146304326|ref|YP_001191642.1|	-	0.0096	15.3	0.0	0.016	14.6	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
Fe_dep_repress	PF01325.14	gi|146304326|ref|YP_001191642.1|	-	0.019	14.9	0.0	0.029	14.2	0.0	1.4	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_Crp_2	PF13545.1	gi|146304326|ref|YP_001191642.1|	-	0.025	14.3	0.0	0.042	13.6	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.1	gi|146304326|ref|YP_001191642.1|	-	0.027	14.6	0.0	0.037	14.1	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
DUF4423	PF14394.1	gi|146304326|ref|YP_001191642.1|	-	0.038	13.5	0.1	0.059	12.9	0.1	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
Sigma70_r4	PF04545.11	gi|146304326|ref|YP_001191642.1|	-	0.052	12.8	0.2	0.13	11.6	0.0	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
HTH_10	PF04967.7	gi|146304326|ref|YP_001191642.1|	-	0.1	12.2	0.0	0.21	11.1	0.0	1.5	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_38	PF13936.1	gi|146304326|ref|YP_001191642.1|	-	0.12	11.9	0.0	0.39	10.2	0.0	2.0	1	1	0	1	1	1	0	Helix-turn-helix	domain
HrcA_DNA-bdg	PF03444.10	gi|146304326|ref|YP_001191642.1|	-	0.13	11.6	0.1	0.2	11.1	0.1	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
TusA	PF01206.12	gi|146304327|ref|YP_001191643.1|	-	3.1e-14	52.3	0.4	3.7e-14	52.0	0.3	1.1	1	0	0	1	1	1	1	Sulfurtransferase	TusA
YHS	PF04945.8	gi|146304328|ref|YP_001191644.1|	-	1.1e-06	28.3	1.9	1.5e-06	27.9	1.3	1.2	1	0	0	1	1	1	1	YHS	domain
DUF4451	PF14616.1	gi|146304328|ref|YP_001191644.1|	-	0.043	13.5	0.8	0.059	13.1	0.6	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4451)
zf-Di19	PF05605.7	gi|146304328|ref|YP_001191644.1|	-	0.08	13.0	0.3	0.14	12.2	0.1	1.7	2	0	0	2	2	2	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-H2C2_2	PF13465.1	gi|146304328|ref|YP_001191644.1|	-	0.19	12.0	3.3	2.5	8.5	0.0	2.6	2	1	0	2	2	2	0	Zinc-finger	double	domain
DUF2296	PF10058.4	gi|146304328|ref|YP_001191644.1|	-	2.5	7.8	4.4	14	5.5	0.1	2.4	2	1	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
zf-C2H2_4	PF13894.1	gi|146304328|ref|YP_001191644.1|	-	3.9	8.0	5.1	5	7.6	0.3	2.7	2	1	0	2	2	2	0	C2H2-type	zinc	finger
zf-HIT	PF04438.11	gi|146304328|ref|YP_001191644.1|	-	8.8	6.0	7.1	3.2	7.4	0.1	2.5	3	1	0	3	3	3	0	HIT	zinc	finger
TrmB	PF01978.14	gi|146304329|ref|YP_001191645.1|	-	1.8e-15	56.3	0.0	2.8e-15	55.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304329|ref|YP_001191645.1|	-	1.7e-09	37.2	0.0	3.8e-09	36.0	0.0	1.6	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|146304329|ref|YP_001191645.1|	-	3.5e-09	36.2	0.0	5e-09	35.7	0.0	1.2	1	0	0	1	1	1	1	MarR	family
HTH_27	PF13463.1	gi|146304329|ref|YP_001191645.1|	-	2.4e-06	27.7	0.0	3.3e-06	27.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.12	gi|146304329|ref|YP_001191645.1|	-	4.3e-06	26.1	0.0	5.6e-06	25.8	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_24	PF13412.1	gi|146304329|ref|YP_001191645.1|	-	8.3e-06	25.0	0.1	1.7e-05	24.1	0.1	1.5	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|146304329|ref|YP_001191645.1|	-	0.00015	21.3	0.0	0.00028	20.5	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
Fe_dep_repress	PF01325.14	gi|146304329|ref|YP_001191645.1|	-	0.00058	19.7	0.0	0.00092	19.1	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_AsnC-type	PF13404.1	gi|146304329|ref|YP_001191645.1|	-	0.0027	17.2	0.0	0.0049	16.3	0.0	1.5	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146304329|ref|YP_001191645.1|	-	0.0069	16.1	0.0	0.016	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|146304329|ref|YP_001191645.1|	-	0.0096	15.4	0.0	0.012	15.1	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
HTH_34	PF13601.1	gi|146304329|ref|YP_001191645.1|	-	0.011	15.7	0.0	0.018	15.0	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mga	PF05043.8	gi|146304329|ref|YP_001191645.1|	-	0.013	15.7	0.0	0.02	15.1	0.0	1.2	1	0	0	1	1	1	0	Mga	helix-turn-helix	domain
DUF2250	PF10007.4	gi|146304329|ref|YP_001191645.1|	-	0.026	14.4	0.0	0.054	13.3	0.0	1.5	2	0	0	2	2	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GntR	PF00392.16	gi|146304329|ref|YP_001191645.1|	-	0.028	13.8	0.0	0.068	12.6	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_Crp_2	PF13545.1	gi|146304329|ref|YP_001191645.1|	-	0.038	13.7	0.0	0.058	13.1	0.0	1.3	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|146304329|ref|YP_001191645.1|	-	0.041	13.4	0.0	0.068	12.7	0.0	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_9	PF08221.6	gi|146304329|ref|YP_001191645.1|	-	0.047	13.5	0.0	0.08	12.8	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_11	PF08279.7	gi|146304329|ref|YP_001191645.1|	-	0.049	13.2	0.0	0.078	12.6	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.1	gi|146304329|ref|YP_001191645.1|	-	0.086	12.9	0.0	0.13	12.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|146304329|ref|YP_001191645.1|	-	0.086	12.9	0.0	0.1	12.7	0.0	1.2	1	0	0	1	1	1	0	Winged	helix-turn	helix
Rio2_N	PF09202.6	gi|146304329|ref|YP_001191645.1|	-	0.11	12.5	0.0	0.23	11.5	0.0	1.6	1	1	0	1	1	1	0	Rio2,	N-terminal
HRDC	PF00570.18	gi|146304329|ref|YP_001191645.1|	-	0.15	11.7	0.0	0.27	10.9	0.0	1.3	1	0	0	1	1	1	0	HRDC	domain
Syntaxin-6_N	PF09177.6	gi|146304330|ref|YP_001191646.1|	-	0.012	15.9	0.3	0.026	14.9	0.2	1.6	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
DUF1886	PF09171.5	gi|146304330|ref|YP_001191646.1|	-	0.013	14.5	0.7	0.013	14.4	0.5	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1886)
ODC_AZ	PF02100.12	gi|146304330|ref|YP_001191646.1|	-	0.014	14.8	0.0	0.021	14.2	0.0	1.3	1	0	0	1	1	1	0	Ornithine	decarboxylase	antizyme
SapB_1	PF05184.10	gi|146304330|ref|YP_001191646.1|	-	0.015	15.0	0.9	0.039	13.7	0.3	1.9	2	0	0	2	2	2	0	Saposin-like	type	B,	region	1
DMAP1	PF05499.7	gi|146304330|ref|YP_001191646.1|	-	0.027	14.0	0.3	0.027	14.0	0.2	1.1	1	0	0	1	1	1	0	DNA	methyltransferase	1-associated	protein	1	(DMAP1)
DUF3140	PF11338.3	gi|146304330|ref|YP_001191646.1|	-	0.051	13.7	0.0	0.075	13.1	0.0	1.4	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3140)
ArsC	PF03960.10	gi|146304330|ref|YP_001191646.1|	-	0.11	12.6	0.3	0.15	12.1	0.2	1.2	1	0	0	1	1	1	0	ArsC	family
DUF4319	PF14203.1	gi|146304330|ref|YP_001191646.1|	-	0.26	10.8	1.9	0.39	10.2	0.9	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4319)
QueC	PF06508.8	gi|146304331|ref|YP_001191647.1|	-	4.3e-24	84.9	0.1	9.9e-23	80.5	0.0	2.0	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.16	gi|146304331|ref|YP_001191647.1|	-	0.069	12.6	0.0	0.099	12.1	0.0	1.3	1	1	0	1	1	1	0	Asparagine	synthase
ATP_bind_3	PF01171.15	gi|146304331|ref|YP_001191647.1|	-	0.13	11.7	0.0	0.88	9.0	0.0	2.0	2	0	0	2	2	2	0	PP-loop	family
HAD_2	PF13419.1	gi|146304332|ref|YP_001191648.1|	-	0.00033	20.9	0.0	0.0004	20.6	0.0	1.1	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
GCV_H	PF01597.14	gi|146304333|ref|YP_001191649.1|	-	4.1e-27	94.2	0.1	4.7e-27	94.0	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.17	gi|146304333|ref|YP_001191649.1|	-	0.00012	21.6	0.0	0.00019	21.0	0.0	1.3	1	0	0	1	1	1	1	Biotin-requiring	enzyme
DNA_ligase_OB_2	PF14743.1	gi|146304333|ref|YP_001191649.1|	-	0.12	12.0	0.0	0.8	9.4	0.0	2.1	2	0	0	2	2	2	0	DNA	ligase	OB-like	domain
YabP	PF07873.6	gi|146304334|ref|YP_001191650.1|	-	0.031	13.8	0.0	0.063	12.8	0.0	1.6	1	1	0	1	1	1	0	YabP	family
DUF3244	PF11589.3	gi|146304334|ref|YP_001191650.1|	-	0.079	12.6	0.0	0.11	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3244)
SdpI	PF13630.1	gi|146304335|ref|YP_001191651.1|	-	2	8.1	5.5	0.45	10.2	1.2	1.8	2	0	0	2	2	2	0	SdpI/YhfL	protein	family
HTH_45	PF14947.1	gi|146304336|ref|YP_001191652.1|	-	5.7e-27	93.3	0.8	6.9e-27	93.0	0.5	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_5	PF01022.15	gi|146304336|ref|YP_001191652.1|	-	0.0018	17.8	0.1	0.0029	17.2	0.1	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HemN_C	PF06969.11	gi|146304336|ref|YP_001191652.1|	-	0.0095	15.9	0.2	0.017	15.1	0.0	1.5	2	0	0	2	2	2	1	HemN	C-terminal	domain
HTH_24	PF13412.1	gi|146304336|ref|YP_001191652.1|	-	0.016	14.5	0.2	0.032	13.6	0.1	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
RICTOR_M	PF14666.1	gi|146304336|ref|YP_001191652.1|	-	0.028	13.4	0.6	0.029	13.4	0.4	1.1	1	0	0	1	1	1	0	Rapamycin-insensitive	companion	of	mTOR,	middle	domain
DUF4364	PF14277.1	gi|146304336|ref|YP_001191652.1|	-	0.036	13.6	0.2	0.041	13.4	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
MotA_activ	PF09114.5	gi|146304336|ref|YP_001191652.1|	-	0.063	13.0	0.1	0.077	12.7	0.0	1.3	1	1	0	1	1	1	0	Transcription	factor	MotA,	activation	domain
HTH_27	PF13463.1	gi|146304336|ref|YP_001191652.1|	-	0.11	12.8	0.0	0.19	12.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
Mrr_N	PF14338.1	gi|146304336|ref|YP_001191652.1|	-	0.11	12.6	0.0	0.54	10.3	0.0	1.9	1	1	1	2	2	2	0	Mrr	N-terminal	domain
TGF_beta_GS	PF08515.7	gi|146304336|ref|YP_001191652.1|	-	0.11	11.8	0.1	0.18	11.1	0.1	1.4	1	0	0	1	1	1	0	Transforming	growth	factor	beta	type	I	GS-motif
DUF2250	PF10007.4	gi|146304336|ref|YP_001191652.1|	-	0.13	12.2	0.1	0.17	11.8	0.1	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Ribosomal_S19e	PF01090.14	gi|146304336|ref|YP_001191652.1|	-	0.14	11.5	0.1	0.17	11.2	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	S19e
DUF3901	PF13040.1	gi|146304336|ref|YP_001191652.1|	-	0.44	9.8	4.3	0.27	10.5	0.4	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF3901)
XylR_N	PF06505.6	gi|146304337|ref|YP_001191653.1|	-	0.078	12.4	0.0	0.13	11.6	0.0	1.3	1	0	0	1	1	1	0	Activator	of	aromatic	catabolism
GHMP_kinases_N	PF00288.21	gi|146304338|ref|YP_001191654.1|	-	7.5e-12	45.1	0.3	1.7e-11	43.9	0.2	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|146304338|ref|YP_001191654.1|	-	7.8e-07	29.2	0.1	1.8e-06	28.0	0.0	1.7	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.21	gi|146304339|ref|YP_001191655.1|	-	2.4e-09	37.1	3.6	5.5e-09	35.9	2.5	1.6	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
HD	PF01966.17	gi|146304340|ref|YP_001191656.1|	-	1.8e-10	40.8	0.3	3.6e-10	39.9	0.2	1.6	1	0	0	1	1	1	1	HD	domain
DUF976	PF06162.7	gi|146304340|ref|YP_001191656.1|	-	0.02	14.4	0.0	0.042	13.3	0.0	1.5	1	0	0	1	1	1	0	Caenorhabditis	elegans	protein	of	unknown	function	(DUF976)
HDOD	PF08668.7	gi|146304340|ref|YP_001191656.1|	-	0.1	11.8	0.0	0.18	11.0	0.0	1.4	1	0	0	1	1	1	0	HDOD	domain
PNP_UDP_1	PF01048.15	gi|146304341|ref|YP_001191657.1|	-	5.8e-38	130.1	0.0	6.6e-38	129.9	0.0	1.0	1	0	0	1	1	1	1	Phosphorylase	superfamily
Endonuc_subdom	PF09062.5	gi|146304343|ref|YP_001191659.1|	-	0.014	16.1	0.2	0.015	16.0	0.2	1.2	1	0	0	1	1	1	0	PI-PfuI	Endonuclease	subdomain
CoA_binding	PF02629.14	gi|146304344|ref|YP_001191660.1|	-	6.2e-24	84.3	1.4	6.2e-24	84.3	1.0	2.4	2	1	0	2	2	2	1	CoA	binding	domain
Ligase_CoA	PF00549.14	gi|146304344|ref|YP_001191660.1|	-	4.4e-13	49.0	0.8	8.8e-13	48.1	0.5	1.5	1	0	0	1	1	1	1	CoA-ligase
CoA_binding_2	PF13380.1	gi|146304344|ref|YP_001191660.1|	-	1.1e-09	38.4	0.4	2.8e-09	37.1	0.1	1.7	2	0	0	2	2	2	1	CoA	binding	domain
Succ_CoA_lig	PF13607.1	gi|146304344|ref|YP_001191660.1|	-	4.8e-06	26.2	0.1	1.4e-05	24.6	0.0	1.8	2	0	0	2	2	2	1	Succinyl-CoA	ligase	like	flavodoxin	domain
GFO_IDH_MocA	PF01408.17	gi|146304344|ref|YP_001191660.1|	-	0.00083	19.8	0.1	0.0025	18.3	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
ATP-grasp_2	PF08442.5	gi|146304345|ref|YP_001191661.1|	-	3e-25	88.7	4.3	2e-24	86.0	0.6	3.1	2	2	0	3	3	3	1	ATP-grasp	domain
Ligase_CoA	PF00549.14	gi|146304345|ref|YP_001191661.1|	-	5.6e-19	68.2	0.9	9.2e-19	67.5	0.6	1.3	1	0	0	1	1	1	1	CoA-ligase
ATP-grasp_5	PF13549.1	gi|146304345|ref|YP_001191661.1|	-	4.5e-08	32.5	0.1	0.00011	21.4	0.1	3.7	3	1	0	3	3	3	2	ATP-grasp	domain
DUF1887	PF09002.6	gi|146304345|ref|YP_001191661.1|	-	0.046	12.1	0.0	0.085	11.2	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1887)
DUF2067	PF09840.4	gi|146304345|ref|YP_001191661.1|	-	0.072	12.5	0.2	32	3.9	0.0	3.1	3	0	0	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2067)
ATP-grasp	PF02222.17	gi|146304345|ref|YP_001191661.1|	-	0.076	12.3	0.0	0.14	11.4	0.0	1.5	1	0	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|146304345|ref|YP_001191661.1|	-	0.091	12.0	0.3	0.33	10.2	0.0	1.9	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
HhH-GPD	PF00730.20	gi|146304346|ref|YP_001191662.1|	-	1.5e-07	31.6	0.0	2e-07	31.2	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|146304346|ref|YP_001191662.1|	-	0.0014	18.1	0.0	0.0049	16.4	0.0	1.9	2	0	0	2	2	2	1	Helix-hairpin-helix	motif
HHH_5	PF14520.1	gi|146304346|ref|YP_001191662.1|	-	0.08	13.1	0.0	0.22	11.6	0.0	1.7	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
EndIII_4Fe-2S	PF10576.4	gi|146304346|ref|YP_001191662.1|	-	0.16	12.1	4.0	0.27	11.4	2.8	1.4	1	0	0	1	1	1	0	Iron-sulfur	binding	domain	of	endonuclease	III
Glyco_tran_28_C	PF04101.11	gi|146304347|ref|YP_001191663.1|	-	8.4e-09	35.3	0.0	1.9e-08	34.1	0.0	1.6	1	1	0	1	1	1	1	Glycosyltransferase	family	28	C-terminal	domain
Glyco_trans_1_3	PF13528.1	gi|146304347|ref|YP_001191663.1|	-	7.5e-08	31.9	0.0	3.7e-07	29.6	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	transferase	family	1
Alg14	PF08660.6	gi|146304347|ref|YP_001191663.1|	-	0.00043	20.3	0.0	0.00069	19.6	0.0	1.3	1	0	0	1	1	1	1	Oligosaccharide	biosynthesis	protein	Alg14	like
tRNA-synt_2b	PF00587.20	gi|146304348|ref|YP_001191664.1|	-	8.5e-42	142.6	0.8	1.1e-41	142.2	0.1	1.6	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|146304348|ref|YP_001191664.1|	-	1.7e-17	63.1	0.2	3.8e-17	62.0	0.1	1.6	1	0	0	1	1	1	1	Anticodon	binding	domain
Dicty_CAD	PF05720.7	gi|146304348|ref|YP_001191664.1|	-	0.039	13.6	0.8	0.87	9.2	0.0	2.8	3	0	0	3	3	3	0	Cell-cell	adhesion	domain
DNA_binding_1	PF01035.15	gi|146304349|ref|YP_001191665.1|	-	7.6e-28	96.1	0.0	1e-27	95.7	0.0	1.2	1	0	0	1	1	1	1	6-O-methylguanine	DNA	methyltransferase,	DNA	binding	domain
Sigma70_r4_2	PF08281.7	gi|146304349|ref|YP_001191665.1|	-	0.014	14.8	0.0	0.028	13.8	0.0	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
Methyltransf_1N	PF02870.10	gi|146304349|ref|YP_001191665.1|	-	0.016	15.8	0.0	0.23	12.0	0.0	2.2	1	1	0	1	1	1	0	6-O-methylguanine	DNA	methyltransferase,	ribonuclease-like	domain
HTH_AsnC-type	PF13404.1	gi|146304349|ref|YP_001191665.1|	-	0.11	12.0	0.0	0.21	11.1	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
MMR_HSR1_C	PF08438.5	gi|146304351|ref|YP_001191667.1|	-	0.00017	21.7	0.7	0.00021	21.5	0.5	1.1	1	0	0	1	1	1	1	GTPase	of	unknown	function	C-terminal
DUF3631	PF12307.3	gi|146304351|ref|YP_001191667.1|	-	0.071	13.0	0.1	0.14	12.0	0.1	1.6	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3631)
MRC1	PF09444.5	gi|146304351|ref|YP_001191667.1|	-	0.9	9.8	6.3	1.5	9.1	4.3	1.4	1	1	0	1	1	1	0	MRC1-like	domain
Usp	PF00582.21	gi|146304352|ref|YP_001191668.1|	-	1e-35	122.9	0.2	1.1e-35	122.8	0.2	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Glycos_transf_1	PF00534.15	gi|146304353|ref|YP_001191669.1|	-	2.5e-33	114.9	0.0	4e-33	114.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304353|ref|YP_001191669.1|	-	1.8e-12	47.6	0.0	3.8e-12	46.5	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_20	PF00982.16	gi|146304353|ref|YP_001191669.1|	-	0.00033	19.2	0.6	0.2	10.0	0.0	2.7	2	1	1	3	3	3	2	Glycosyltransferase	family	20
Glyco_trans_1_2	PF13524.1	gi|146304353|ref|YP_001191669.1|	-	0.082	13.1	0.0	0.24	11.7	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
PsiE	PF06146.7	gi|146304354|ref|YP_001191670.1|	-	0.00022	21.4	2.1	0.00022	21.4	1.5	2.3	3	1	0	3	3	3	1	Phosphate-starvation-inducible	E
CbiA	PF01656.18	gi|146304355|ref|YP_001191671.1|	-	1.4e-08	34.3	0.1	1.8e-08	34.0	0.1	1.2	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MipZ	PF09140.6	gi|146304355|ref|YP_001191671.1|	-	0.00019	20.6	0.1	0.00026	20.1	0.1	1.1	1	0	0	1	1	1	1	ATPase	MipZ
AAA_31	PF13614.1	gi|146304355|ref|YP_001191671.1|	-	0.00024	21.0	0.3	0.00075	19.4	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
DUF1027	PF06265.6	gi|146304355|ref|YP_001191671.1|	-	0.0065	16.3	0.2	0.0098	15.7	0.2	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1027)
MobB	PF03205.9	gi|146304355|ref|YP_001191671.1|	-	0.0098	15.6	0.8	0.015	15.0	0.6	1.6	1	1	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_29	PF13555.1	gi|146304355|ref|YP_001191671.1|	-	0.017	14.6	0.1	0.033	13.7	0.0	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
ArsA_ATPase	PF02374.10	gi|146304355|ref|YP_001191671.1|	-	0.017	14.1	2.4	0.021	13.8	0.7	1.6	1	1	0	2	2	2	0	Anion-transporting	ATPase
Ldh_1_N	PF00056.18	gi|146304355|ref|YP_001191671.1|	-	0.021	14.6	0.3	0.032	14.0	0.2	1.6	1	1	0	1	1	1	0	lactate/malate	dehydrogenase,	NAD	binding	domain
SpoIISA_toxin	PF14171.1	gi|146304355|ref|YP_001191671.1|	-	0.045	13.0	0.5	0.061	12.5	0.3	1.3	1	0	0	1	1	1	0	Toxin	SpoIISA,	type	II	toxin-antitoxin	system
CBM_X2	PF03442.9	gi|146304355|ref|YP_001191671.1|	-	0.046	13.5	0.1	4.2	7.2	0.0	2.2	1	1	1	2	2	2	0	Carbohydrate	binding	domain	X2
AAA_10	PF12846.2	gi|146304355|ref|YP_001191671.1|	-	0.047	13.1	0.2	0.084	12.2	0.1	1.4	1	1	0	1	1	1	0	AAA-like	domain
AAA_17	PF13207.1	gi|146304355|ref|YP_001191671.1|	-	0.05	14.4	0.8	0.084	13.6	0.6	1.6	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|146304355|ref|YP_001191671.1|	-	0.094	11.4	0.3	0.12	11.1	0.2	1.1	1	0	0	1	1	1	0	ArgK	protein
AAA_19	PF13245.1	gi|146304355|ref|YP_001191671.1|	-	0.14	11.9	0.5	0.24	11.2	0.3	1.3	1	0	0	1	1	1	0	Part	of	AAA	domain
MMR_HSR1	PF01926.18	gi|146304355|ref|YP_001191671.1|	-	0.15	12.0	0.4	0.19	11.6	0.3	1.3	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
NolX	PF05819.6	gi|146304356|ref|YP_001191672.1|	-	0.054	11.8	0.0	0.054	11.8	0.0	1.0	1	0	0	1	1	1	0	NolX	protein
Cob_adeno_trans	PF01923.13	gi|146304357|ref|YP_001191673.1|	-	8.7e-50	168.6	0.0	9.8e-50	168.5	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
POR	PF01558.13	gi|146304359|ref|YP_001191675.1|	-	1e-29	103.6	0.0	1.2e-29	103.4	0.0	1.0	1	0	0	1	1	1	1	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
TPP_enzyme_C	PF02775.16	gi|146304360|ref|YP_001191676.1|	-	1.4e-20	73.4	0.0	4.2e-20	71.8	0.0	1.9	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
POR_N	PF01855.14	gi|146304360|ref|YP_001191676.1|	-	5.2e-15	55.5	0.3	1.2e-14	54.3	0.1	1.6	2	0	0	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Fer4	PF00037.22	gi|146304360|ref|YP_001191676.1|	-	5.2e-12	44.8	16.1	3.6e-09	35.8	4.5	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_10	PF13237.1	gi|146304360|ref|YP_001191676.1|	-	2.2e-09	36.9	8.4	4.8e-09	35.8	5.8	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304360|ref|YP_001191676.1|	-	6.8e-09	35.2	22.8	5.8e-07	29.1	4.0	2.7	3	0	0	3	3	2	2	4Fe-4S	binding	domain
TPP_enzyme_N	PF02776.13	gi|146304360|ref|YP_001191676.1|	-	6.3e-08	32.3	2.1	0.00028	20.4	0.1	2.9	3	0	0	3	3	3	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Fer4_2	PF12797.2	gi|146304360|ref|YP_001191676.1|	-	6.4e-07	28.9	15.1	4.2e-05	23.2	3.1	2.6	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_7	PF12838.2	gi|146304360|ref|YP_001191676.1|	-	1.3e-06	28.6	12.3	1.3e-06	28.6	8.5	2.3	2	1	1	3	3	2	2	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146304360|ref|YP_001191676.1|	-	2.8e-06	27.0	12.2	1.4e-05	24.8	7.4	2.3	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_17	PF13534.1	gi|146304360|ref|YP_001191676.1|	-	3.5e-05	24.0	3.4	0.0045	17.3	0.1	2.5	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_9	PF13187.1	gi|146304360|ref|YP_001191676.1|	-	3.9e-05	23.8	12.6	9.8e-05	22.5	8.8	1.7	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146304360|ref|YP_001191676.1|	-	0.00013	22.6	6.8	0.00086	20.0	0.4	2.5	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
Fer4_8	PF13183.1	gi|146304360|ref|YP_001191676.1|	-	0.00019	21.3	10.1	0.00096	19.1	7.2	2.0	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Transketolase_C	PF02780.15	gi|146304360|ref|YP_001191676.1|	-	0.00057	19.8	0.2	0.0015	18.4	0.1	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Fer4_3	PF12798.2	gi|146304360|ref|YP_001191676.1|	-	0.0036	17.7	7.8	0.0036	17.7	5.4	3.3	3	0	0	3	3	3	1	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304360|ref|YP_001191676.1|	-	0.0074	16.5	4.4	0.0074	16.5	3.0	2.7	3	0	0	3	3	2	2	4Fe-4S	binding	domain
Fer4_11	PF13247.1	gi|146304360|ref|YP_001191676.1|	-	0.023	14.5	5.8	0.034	14.0	3.3	1.8	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
E1_dh	PF00676.15	gi|146304360|ref|YP_001191676.1|	-	0.04	12.6	0.0	0.11	11.2	0.0	1.7	1	0	0	1	1	1	0	Dehydrogenase	E1	component
Fer4_13	PF13370.1	gi|146304360|ref|YP_001191676.1|	-	0.068	13.5	13.7	0.3	11.5	1.2	2.6	1	1	1	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_15	PF13459.1	gi|146304360|ref|YP_001191676.1|	-	0.15	12.6	15.7	0.054	14.0	1.5	3.1	2	1	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|146304360|ref|YP_001191676.1|	-	6.7	7.2	16.3	0.17	12.3	3.7	2.7	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
HTH_3	PF01381.17	gi|146304361|ref|YP_001191677.1|	-	2.9e-10	39.8	0.0	5.2e-10	39.0	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|146304361|ref|YP_001191677.1|	-	2.6e-07	30.5	0.0	4.8e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|146304361|ref|YP_001191677.1|	-	4e-06	26.9	0.0	6.5e-06	26.2	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|146304361|ref|YP_001191677.1|	-	0.0061	16.0	0.0	0.016	14.7	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|146304361|ref|YP_001191677.1|	-	0.0084	15.8	0.0	0.02	14.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|146304361|ref|YP_001191677.1|	-	0.032	13.6	0.0	0.067	12.5	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.1	gi|146304361|ref|YP_001191677.1|	-	0.08	12.6	0.0	0.16	11.6	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
MerR_1	PF13411.1	gi|146304361|ref|YP_001191677.1|	-	0.12	12.2	0.0	0.22	11.3	0.0	1.4	1	0	0	1	1	1	0	MerR	HTH	family	regulatory	protein
Phage_CI_repr	PF07022.8	gi|146304361|ref|YP_001191677.1|	-	0.12	12.5	0.0	0.14	12.2	0.0	1.4	1	0	0	1	1	1	0	Bacteriophage	CI	repressor	helix-turn-helix	domain
NAC	PF01849.13	gi|146304362|ref|YP_001191678.1|	-	1.3e-05	24.6	0.6	2.9e-05	23.4	0.4	1.6	1	0	0	1	1	1	1	NAC	domain
UBA	PF00627.26	gi|146304362|ref|YP_001191678.1|	-	1.9e-05	24.3	0.2	0.0003	20.5	0.0	2.3	2	1	0	2	2	2	1	UBA/TS-N	domain
CUE	PF02845.11	gi|146304362|ref|YP_001191678.1|	-	0.046	13.2	0.0	0.19	11.2	0.0	1.9	1	1	1	2	2	2	0	CUE	domain
DUF59	PF01883.14	gi|146304362|ref|YP_001191678.1|	-	0.13	12.2	1.0	0.78	9.7	0.7	2.2	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF59
Beta-Casp	PF10996.3	gi|146304363|ref|YP_001191679.1|	-	6.2e-25	87.5	0.0	1.3e-24	86.5	0.0	1.6	1	0	0	1	1	1	1	Beta-Casp	domain
Lactamase_B_2	PF12706.2	gi|146304363|ref|YP_001191679.1|	-	6e-13	48.7	0.0	1e-12	47.9	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146304363|ref|YP_001191679.1|	-	2.6e-12	46.7	0.0	4.3e-12	46.0	0.0	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|146304363|ref|YP_001191679.1|	-	3.9e-09	36.1	0.0	9e-09	35.0	0.0	1.6	1	0	0	1	1	1	1	RNA-metabolising	metallo-beta-lactamase
PDEase_II	PF02112.10	gi|146304363|ref|YP_001191679.1|	-	0.0018	17.2	0.0	0.0027	16.6	0.0	1.4	1	0	0	1	1	1	1	cAMP	phosphodiesterases	class-II
HeH	PF12949.2	gi|146304363|ref|YP_001191679.1|	-	0.042	13.4	0.1	0.8	9.3	0.0	2.4	2	0	0	2	2	2	0	HeH/LEM	domain
Lactamase_B_3	PF13483.1	gi|146304363|ref|YP_001191679.1|	-	0.044	13.4	0.0	0.09	12.4	0.0	1.5	1	0	0	1	1	1	0	Beta-lactamase	superfamily	domain
tRNA-Thr_ED	PF08915.6	gi|146304364|ref|YP_001191680.1|	-	8.8e-52	174.7	0.0	1.4e-51	174.0	0.0	1.3	1	0	0	1	1	1	1	Archaea-specific	editing	domain	of	threonyl-tRNA	synthetase
HGTP_anticodon	PF03129.15	gi|146304364|ref|YP_001191680.1|	-	1.1e-17	63.6	0.8	3.1e-17	62.2	0.5	1.7	1	0	0	1	1	1	1	Anticodon	binding	domain
Glycoamylase	PF10091.4	gi|146304364|ref|YP_001191680.1|	-	0.00037	19.6	0.0	0.00094	18.3	0.0	1.6	1	1	1	2	2	2	1	Putative	glucoamylase
GHMP_kinases_C	PF08544.8	gi|146304365|ref|YP_001191681.1|	-	7.7e-12	45.2	0.1	3.7e-11	43.0	0.1	2.1	2	0	0	2	2	2	1	GHMP	kinases	C	terminal
GHMP_kinases_N	PF00288.21	gi|146304365|ref|YP_001191681.1|	-	8.9e-10	38.5	0.1	2.2e-09	37.2	0.1	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
SIS	PF01380.17	gi|146304366|ref|YP_001191682.1|	-	5.4e-39	132.8	1.1	1.5e-19	69.8	0.5	2.5	2	0	0	2	2	2	2	SIS	domain
GATase_6	PF13522.1	gi|146304366|ref|YP_001191682.1|	-	1.6e-21	76.6	0.1	4.7e-21	75.1	0.0	1.8	2	0	0	2	2	2	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|146304366|ref|YP_001191682.1|	-	3.4e-17	62.2	0.1	3.2e-13	49.1	0.0	2.2	1	1	1	2	2	2	2	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|146304366|ref|YP_001191682.1|	-	3.1e-14	52.7	0.0	7.9e-14	51.4	0.0	1.8	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_4	PF13230.1	gi|146304366|ref|YP_001191682.1|	-	3.6e-05	22.6	0.1	6.4e-05	21.7	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferases	class-II
SIS_2	PF13580.1	gi|146304366|ref|YP_001191682.1|	-	0.005	16.5	0.4	0.032	13.9	0.1	2.4	2	1	1	3	3	3	1	SIS	domain
FAD_binding_4	PF01565.18	gi|146304366|ref|YP_001191682.1|	-	0.046	13.1	0.1	1.4	8.3	0.0	2.5	2	0	0	2	2	2	0	FAD	binding	domain
Hexapep	PF00132.19	gi|146304367|ref|YP_001191683.1|	-	9.8e-17	59.6	9.6	4.4e-06	25.9	0.0	5.0	2	1	4	6	6	6	5	Bacterial	transferase	hexapeptide	(six	repeats)
NTP_transferase	PF00483.18	gi|146304367|ref|YP_001191683.1|	-	1.1e-14	54.3	0.3	1.1e-12	47.8	0.0	2.1	1	1	1	2	2	2	2	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146304367|ref|YP_001191683.1|	-	1.3e-13	51.3	0.0	1.8e-13	50.9	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|146304367|ref|YP_001191683.1|	-	0.0011	18.5	0.5	0.0027	17.2	0.2	1.8	2	1	1	3	3	3	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Hexapep_2	PF14602.1	gi|146304367|ref|YP_001191683.1|	-	0.0048	16.4	1.4	34	4.1	0.1	4.4	4	1	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
CTP_transf_3	PF02348.14	gi|146304367|ref|YP_001191683.1|	-	0.11	12.0	0.2	0.24	10.9	0.0	1.6	2	0	0	2	2	2	0	Cytidylyltransferase
Fucokinase	PF07959.7	gi|146304367|ref|YP_001191683.1|	-	0.15	10.6	0.8	0.32	9.4	0.1	1.8	1	1	1	2	2	2	0	L-fucokinase
DrsE_2	PF13686.1	gi|146304368|ref|YP_001191684.1|	-	3.1e-14	52.9	0.4	3.8e-13	49.4	0.2	1.9	1	1	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
TusA	PF01206.12	gi|146304369|ref|YP_001191685.1|	-	1.1e-10	41.0	0.1	1.2e-10	40.7	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
Nucleoporin2	PF04096.9	gi|146304369|ref|YP_001191685.1|	-	0.0077	16.0	0.0	0.0081	15.9	0.0	1.1	1	0	0	1	1	1	1	Nucleoporin	autopeptidase
Colicin_Pyocin	PF01320.13	gi|146304369|ref|YP_001191685.1|	-	0.13	12.1	0.4	0.53	10.1	0.1	1.9	2	0	0	2	2	2	0	Colicin	immunity	protein	/	pyocin	immunity	protein
PALP	PF00291.20	gi|146304370|ref|YP_001191686.1|	-	9e-51	172.9	0.0	1.1e-50	172.6	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
DUF1769	PF08588.5	gi|146304370|ref|YP_001191686.1|	-	0.1	12.5	0.0	1.1	9.2	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1769)
Mob_synth_C	PF06463.8	gi|146304372|ref|YP_001191688.1|	-	1.3e-26	92.7	0.0	2.1e-26	92.0	0.0	1.3	1	0	0	1	1	1	1	Molybdenum	Cofactor	Synthesis	C
Radical_SAM	PF04055.16	gi|146304372|ref|YP_001191688.1|	-	4.4e-22	79.0	0.2	2.7e-21	76.4	0.0	2.0	1	1	1	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146304372|ref|YP_001191688.1|	-	3e-06	27.2	0.0	1.4e-05	25.0	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|146304372|ref|YP_001191688.1|	-	3.5e-06	27.1	0.0	1.2e-05	25.4	0.0	1.8	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Peptidase_M24	PF00557.19	gi|146304373|ref|YP_001191689.1|	-	5.6e-64	215.5	0.8	7.1e-64	215.1	0.6	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.13	gi|146304373|ref|YP_001191689.1|	-	1.8e-07	31.6	0.0	3.4e-07	30.8	0.0	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
FKBP_C	PF00254.23	gi|146304373|ref|YP_001191689.1|	-	0.022	14.7	0.2	1.7	8.6	0.0	2.5	1	1	1	2	2	2	0	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
GTP_cyclohydroI	PF01227.17	gi|146304374|ref|YP_001191690.1|	-	1.3e-61	207.0	0.0	1.5e-61	206.8	0.0	1.0	1	0	0	1	1	1	1	GTP	cyclohydrolase	I
FlpD	PF02662.11	gi|146304374|ref|YP_001191690.1|	-	0.063	12.9	0.1	2.4	7.8	0.0	2.4	2	0	0	2	2	2	0	Methyl-viologen-reducing	hydrogenase,	delta	subunit
Gln-synt_C	PF00120.19	gi|146304375|ref|YP_001191691.1|	-	1.5e-97	325.7	0.0	1.9e-97	325.4	0.0	1.1	1	0	0	1	1	1	1	Glutamine	synthetase,	catalytic	domain
Gln-synt_N	PF03951.14	gi|146304375|ref|YP_001191691.1|	-	5.3e-23	80.4	0.0	1.1e-22	79.3	0.0	1.6	1	0	0	1	1	1	1	Glutamine	synthetase,	beta-Grasp	domain
ABC_tran	PF00005.22	gi|146304376|ref|YP_001191692.1|	-	8.5e-25	87.6	0.0	1.1e-24	87.2	0.0	1.1	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304376|ref|YP_001191692.1|	-	3.3e-09	37.1	4.8	4.7e-05	23.5	0.3	2.2	1	1	1	2	2	2	2	AAA	domain
T2SE	PF00437.15	gi|146304376|ref|YP_001191692.1|	-	7.7e-06	25.0	0.1	1.2e-05	24.3	0.0	1.4	1	1	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_10	PF12846.2	gi|146304376|ref|YP_001191692.1|	-	3.8e-05	23.2	0.2	0.018	14.5	0.1	2.2	2	0	0	2	2	2	2	AAA-like	domain
AAA_29	PF13555.1	gi|146304376|ref|YP_001191692.1|	-	6e-05	22.5	0.1	0.0001	21.7	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.1	gi|146304376|ref|YP_001191692.1|	-	6.6e-05	23.3	2.2	0.00011	22.5	1.5	1.7	1	1	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146304376|ref|YP_001191692.1|	-	0.00012	22.2	1.7	0.0025	17.9	1.2	2.1	1	1	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|146304376|ref|YP_001191692.1|	-	0.00024	20.8	0.0	0.00042	19.9	0.0	1.4	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_17	PF13207.1	gi|146304376|ref|YP_001191692.1|	-	0.00072	20.3	0.2	0.00084	20.1	0.2	1.6	1	1	0	1	1	1	1	AAA	domain
AAA_14	PF13173.1	gi|146304376|ref|YP_001191692.1|	-	0.001	19.0	0.6	0.11	12.4	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|146304376|ref|YP_001191692.1|	-	0.001	19.1	0.1	0.0015	18.5	0.1	1.6	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF258	PF03193.11	gi|146304376|ref|YP_001191692.1|	-	0.0015	17.7	0.0	0.0016	17.6	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
SMC_N	PF02463.14	gi|146304376|ref|YP_001191692.1|	-	0.0042	16.3	0.8	0.013	14.7	0.2	1.8	1	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
NACHT	PF05729.7	gi|146304376|ref|YP_001191692.1|	-	0.006	16.2	0.1	0.013	15.1	0.1	1.6	1	0	0	1	1	1	1	NACHT	domain
AAA_30	PF13604.1	gi|146304376|ref|YP_001191692.1|	-	0.013	15.0	0.0	0.025	14.1	0.0	1.5	1	1	0	1	1	1	0	AAA	domain
MobB	PF03205.9	gi|146304376|ref|YP_001191692.1|	-	0.014	15.0	0.1	0.046	13.4	0.0	1.8	2	1	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_18	PF13238.1	gi|146304376|ref|YP_001191692.1|	-	0.018	15.3	0.1	0.034	14.4	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|146304376|ref|YP_001191692.1|	-	0.025	14.2	0.0	0.031	13.9	0.0	1.4	1	1	0	1	1	1	0	Archaeal	ATPase
AAA_15	PF13175.1	gi|146304376|ref|YP_001191692.1|	-	0.026	13.5	1.1	0.2	10.6	0.0	2.0	1	1	0	2	2	2	0	AAA	ATPase	domain
Zot	PF05707.7	gi|146304376|ref|YP_001191692.1|	-	0.029	13.8	0.3	0.8	9.1	0.0	2.4	2	1	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
MutS_V	PF00488.16	gi|146304376|ref|YP_001191692.1|	-	0.033	13.5	0.1	0.057	12.8	0.1	1.3	1	0	0	1	1	1	0	MutS	domain	V
AAA_5	PF07728.9	gi|146304376|ref|YP_001191692.1|	-	0.04	13.6	0.1	0.29	10.8	0.0	2.1	2	1	1	3	3	3	0	AAA	domain	(dynein-related	subfamily)
AAA_28	PF13521.1	gi|146304376|ref|YP_001191692.1|	-	0.041	13.8	0.0	0.064	13.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|146304376|ref|YP_001191692.1|	-	0.048	13.3	0.1	0.087	12.5	0.1	1.4	1	0	0	1	1	1	0	NTPase
NB-ARC	PF00931.17	gi|146304376|ref|YP_001191692.1|	-	0.067	12.0	0.5	2.7	6.7	0.1	2.0	2	0	0	2	2	2	0	NB-ARC	domain
RNA_helicase	PF00910.17	gi|146304376|ref|YP_001191692.1|	-	0.073	13.2	0.0	0.23	11.6	0.0	1.8	2	0	0	2	2	2	0	RNA	helicase
AAA	PF00004.24	gi|146304376|ref|YP_001191692.1|	-	0.076	13.2	0.2	0.18	11.9	0.2	1.8	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zeta_toxin	PF06414.7	gi|146304376|ref|YP_001191692.1|	-	0.096	11.7	0.0	0.15	11.1	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
PIF1	PF05970.9	gi|146304376|ref|YP_001191692.1|	-	0.11	11.4	0.2	0.56	9.0	0.0	1.9	2	0	0	2	2	2	0	PIF1-like	helicase
AAA_25	PF13481.1	gi|146304376|ref|YP_001191692.1|	-	0.11	11.8	0.0	0.2	11.0	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
MMR_HSR1	PF01926.18	gi|146304376|ref|YP_001191692.1|	-	0.11	12.4	0.4	0.15	11.9	0.2	1.6	1	1	0	1	1	1	0	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|146304376|ref|YP_001191692.1|	-	0.12	12.1	0.0	0.26	11.1	0.0	1.5	1	0	0	1	1	1	0	Dynamin	family
AAA_13	PF13166.1	gi|146304376|ref|YP_001191692.1|	-	0.13	10.6	0.2	0.19	10.1	0.1	1.2	1	0	0	1	1	1	0	AAA	domain
Thioredoxin	PF00085.15	gi|146304377|ref|YP_001191693.1|	-	1.4e-24	85.7	0.1	2.2e-24	85.1	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|146304377|ref|YP_001191693.1|	-	2.8e-08	33.9	0.4	2.8e-07	30.7	0.1	2.4	1	1	1	2	2	2	1	Thioredoxin-like	domain
Thioredoxin_8	PF13905.1	gi|146304377|ref|YP_001191693.1|	-	9.5e-08	32.0	1.0	8.8e-05	22.5	0.1	2.7	2	1	1	3	3	3	2	Thioredoxin-like
Thioredoxin_3	PF13192.1	gi|146304377|ref|YP_001191693.1|	-	9.7e-06	25.3	0.1	5.1e-05	23.0	0.0	1.9	2	0	0	2	2	2	1	Thioredoxin	domain
Redoxin	PF08534.5	gi|146304377|ref|YP_001191693.1|	-	3.3e-05	23.4	0.6	0.0014	18.2	0.1	2.2	1	1	1	2	2	2	1	Redoxin
Thioredoxin_7	PF13899.1	gi|146304377|ref|YP_001191693.1|	-	8.8e-05	22.4	0.0	0.00013	21.8	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin-like
AhpC-TSA	PF00578.16	gi|146304377|ref|YP_001191693.1|	-	0.00011	21.9	0.5	0.0036	16.9	0.1	2.4	1	1	2	3	3	3	1	AhpC/TSA	family
Thioredoxin_9	PF14595.1	gi|146304377|ref|YP_001191693.1|	-	0.0061	16.1	0.0	0.0085	15.6	0.0	1.3	1	0	0	1	1	1	1	Thioredoxin
DSBA	PF01323.15	gi|146304377|ref|YP_001191693.1|	-	0.011	15.2	0.8	0.09	12.3	0.0	2.2	1	1	1	2	2	2	0	DSBA-like	thioredoxin	domain
MbeB_N	PF04837.7	gi|146304377|ref|YP_001191693.1|	-	0.068	13.2	1.0	0.14	12.2	0.7	1.5	1	0	0	1	1	1	0	MbeB-like,	N-term	conserved	region
KaiB	PF07689.7	gi|146304377|ref|YP_001191693.1|	-	0.087	12.3	0.0	0.16	11.4	0.0	1.4	1	0	0	1	1	1	0	KaiB	domain
Thioredoxin_6	PF13848.1	gi|146304377|ref|YP_001191693.1|	-	0.11	12.3	0.0	0.66	9.7	0.0	1.7	1	1	0	1	1	1	0	Thioredoxin-like	domain
AMP-binding	PF00501.23	gi|146304378|ref|YP_001191694.1|	-	1.1e-52	178.8	0.0	1.4e-52	178.4	0.0	1.1	1	0	0	1	1	1	1	AMP-binding	enzyme
AMP-binding_C	PF13193.1	gi|146304378|ref|YP_001191694.1|	-	1.8e-07	31.9	0.1	4.1e-07	30.8	0.0	1.6	1	0	0	1	1	1	1	AMP-binding	enzyme	C-terminal	domain
Nol1_Nop2_Fmu	PF01189.12	gi|146304380|ref|YP_001191696.1|	-	3.1e-30	105.5	0.0	1.8e-29	103.0	0.0	1.9	1	1	1	2	2	2	1	NOL1/NOP2/sun	family
Methyltransf_31	PF13847.1	gi|146304380|ref|YP_001191696.1|	-	3.1e-05	23.5	0.0	5.2e-05	22.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PUA	PF01472.15	gi|146304380|ref|YP_001191696.1|	-	7.5e-05	22.3	0.4	0.00022	20.8	0.3	1.8	1	0	0	1	1	1	1	PUA	domain
Methyltransf_26	PF13659.1	gi|146304380|ref|YP_001191696.1|	-	0.002	18.1	0.0	0.0028	17.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|146304380|ref|YP_001191696.1|	-	0.0031	16.9	0.0	0.005	16.2	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_18	PF12847.2	gi|146304380|ref|YP_001191696.1|	-	0.0032	18.0	0.0	0.0056	17.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
N6_N4_Mtase	PF01555.13	gi|146304380|ref|YP_001191696.1|	-	0.068	12.6	0.0	0.12	11.8	0.0	1.4	1	0	0	1	1	1	0	DNA	methylase
Methyltransf_11	PF08241.7	gi|146304380|ref|YP_001191696.1|	-	0.069	13.6	0.0	0.35	11.3	0.0	2.2	1	1	0	1	1	1	0	Methyltransferase	domain
Hexapep	PF00132.19	gi|146304381|ref|YP_001191697.1|	-	4.6e-21	73.3	17.0	3e-10	39.1	5.5	4.3	3	1	1	4	4	4	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|146304381|ref|YP_001191697.1|	-	1.3e-08	34.1	17.7	8.4e-06	25.2	6.9	4.0	2	1	2	4	4	4	3	Hexapeptide	repeat	of	succinyl-transferase
HupF_HypC	PF01455.13	gi|146304381|ref|YP_001191697.1|	-	0.38	10.7	3.1	34	4.5	1.1	3.2	2	1	0	2	2	2	0	HupF/HypC	family
Phage_integrase	PF00589.17	gi|146304382|ref|YP_001191698.1|	-	2.9e-42	144.2	0.7	4.3e-42	143.7	0.5	1.3	1	0	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_4	PF13495.1	gi|146304382|ref|YP_001191698.1|	-	1.9e-10	40.9	0.0	9.9e-06	25.7	0.0	2.7	2	1	1	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
Phage_int_SAM_1	PF02899.12	gi|146304382|ref|YP_001191698.1|	-	1.2e-07	31.7	0.1	1.7e-05	24.9	0.0	3.1	1	1	2	3	3	3	2	Phage	integrase,	N-terminal	SAM-like	domain
Integrase_1	PF12835.2	gi|146304382|ref|YP_001191698.1|	-	4e-05	23.4	0.6	5.7e-05	22.9	0.1	1.5	2	0	0	2	2	2	1	Integrase
DUF711	PF05167.7	gi|146304384|ref|YP_001191700.1|	-	3.8e-72	243.2	0.0	4.6e-72	242.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	ACR	(DUF711)
Antitoxin-MazE	PF04014.13	gi|146304385|ref|YP_001191701.1|	-	1.1e-07	31.4	0.0	3.3e-07	29.8	0.0	1.9	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
PhoU	PF01895.14	gi|146304385|ref|YP_001191701.1|	-	0.0033	17.8	2.3	0.0033	17.8	1.6	2.5	2	0	0	2	2	2	1	PhoU	domain
Phasin	PF05597.6	gi|146304385|ref|YP_001191701.1|	-	0.78	9.5	4.0	7.6	6.3	0.7	2.5	2	0	0	2	2	2	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
QRPTase_C	PF01729.14	gi|146304386|ref|YP_001191702.1|	-	1.9e-20	73.0	0.0	2.5e-20	72.6	0.0	1.2	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
QRPTase_N	PF02749.11	gi|146304386|ref|YP_001191702.1|	-	2.5e-05	23.9	0.0	4.9e-05	23.0	0.0	1.5	1	0	0	1	1	1	1	Quinolinate	phosphoribosyl	transferase,	N-terminal	domain
Ribosomal_S19e	PF01090.14	gi|146304387|ref|YP_001191703.1|	-	5e-45	152.3	0.0	5.7e-45	152.1	0.0	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S19e
Rrf2	PF02082.15	gi|146304387|ref|YP_001191703.1|	-	0.032	14.3	0.1	0.059	13.4	0.1	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_12	PF08461.5	gi|146304387|ref|YP_001191703.1|	-	0.13	11.9	0.1	0.23	11.2	0.0	1.5	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
dsDNA_bind	PF01984.15	gi|146304388|ref|YP_001191704.1|	-	2.6e-30	104.5	9.7	3.2e-30	104.2	6.8	1.0	1	0	0	1	1	1	1	Double-stranded	DNA-binding	domain
DUF4355	PF14265.1	gi|146304388|ref|YP_001191704.1|	-	0.027	14.4	3.6	0.032	14.1	2.5	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4355)
Radial_spoke_3	PF06098.6	gi|146304388|ref|YP_001191704.1|	-	0.15	11.0	5.3	0.16	10.9	3.6	1.1	1	0	0	1	1	1	0	Radial	spoke	protein	3
T3SS_LEE_assoc	PF13327.1	gi|146304388|ref|YP_001191704.1|	-	0.35	10.4	2.2	1.6	8.3	0.0	2.0	1	1	1	2	2	2	0	Type	III	secretion	system	subunit
PIN_3	PF13470.1	gi|146304388|ref|YP_001191704.1|	-	1.3	9.6	4.8	1.9	9.1	0.0	2.0	1	1	1	2	2	2	0	PIN	domain
Ribosomal_L39	PF00832.15	gi|146304389|ref|YP_001191705.1|	-	1e-22	79.3	5.8	1.1e-22	79.1	4.0	1.1	1	0	0	1	1	1	1	Ribosomal	L39	protein
Ribosomal_L31e	PF01198.14	gi|146304390|ref|YP_001191706.1|	-	2e-12	46.5	0.5	2.6e-12	46.2	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L31e
Phage_antitermQ	PF06530.7	gi|146304390|ref|YP_001191706.1|	-	0.084	12.4	0.0	0.097	12.2	0.0	1.1	1	0	0	1	1	1	0	Phage	antitermination	protein	Q
eIF-6	PF01912.13	gi|146304391|ref|YP_001191707.1|	-	1.7e-70	236.1	9.2	2e-70	235.9	6.3	1.1	1	0	0	1	1	1	1	eIF-6	family
Ribosomal_L18ae	PF01775.12	gi|146304392|ref|YP_001191708.1|	-	2.9e-10	40.1	0.3	1.9e-09	37.4	0.2	1.9	1	1	0	1	1	1	1	Ribosomal	L18ae/LX	protein	domain
Prefoldin	PF02996.12	gi|146304393|ref|YP_001191709.1|	-	6.5e-20	70.9	3.4	8.2e-20	70.6	2.3	1.1	1	0	0	1	1	1	1	Prefoldin	subunit
HHH_6	PF14579.1	gi|146304393|ref|YP_001191709.1|	-	0.00013	21.9	1.0	0.0061	16.5	0.5	2.6	1	1	1	2	2	2	1	Helix-hairpin-helix	motif
DUF2762	PF10960.3	gi|146304393|ref|YP_001191709.1|	-	0.0013	18.3	0.8	0.04	13.6	0.1	2.3	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2762)
NPV_P10	PF05531.7	gi|146304393|ref|YP_001191709.1|	-	0.011	15.9	4.5	0.21	11.8	0.7	2.2	2	0	0	2	2	2	0	Nucleopolyhedrovirus	P10	protein
Sec8_exocyst	PF04048.9	gi|146304393|ref|YP_001191709.1|	-	0.017	14.7	1.3	0.17	11.5	0.2	2.1	2	0	0	2	2	2	0	Sec8	exocyst	complex	component	specific	domain
Fib_alpha	PF08702.5	gi|146304393|ref|YP_001191709.1|	-	0.043	13.9	4.8	0.29	11.2	1.1	2.1	2	0	0	2	2	2	0	Fibrinogen	alpha/beta	chain	family
DUF3053	PF11254.3	gi|146304393|ref|YP_001191709.1|	-	0.071	12.3	3.3	0.91	8.7	0.3	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3053)
DUF2090	PF09863.4	gi|146304393|ref|YP_001191709.1|	-	0.093	11.5	0.2	0.13	11.0	0.1	1.3	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2090)
Prefoldin_2	PF01920.15	gi|146304393|ref|YP_001191709.1|	-	0.14	11.9	8.8	1.3	8.8	0.5	2.1	2	0	0	2	2	2	0	Prefoldin	subunit
DASH_Duo1	PF08651.5	gi|146304393|ref|YP_001191709.1|	-	0.17	11.4	2.1	1.7	8.3	0.1	2.3	2	0	0	2	2	2	0	DASH	complex	subunit	Duo1
DUF2203	PF09969.4	gi|146304393|ref|YP_001191709.1|	-	0.2	11.9	3.7	0.63	10.2	0.2	2.1	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
CENP-F_leu_zip	PF10473.4	gi|146304393|ref|YP_001191709.1|	-	0.28	11.0	6.7	0.11	12.3	0.6	2.0	2	0	0	2	2	2	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
GAS	PF13851.1	gi|146304393|ref|YP_001191709.1|	-	0.28	10.3	7.1	0.59	9.3	0.5	2.1	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
DUF4164	PF13747.1	gi|146304393|ref|YP_001191709.1|	-	0.33	11.1	8.6	0.88	9.7	0.9	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4164)
Seryl_tRNA_N	PF02403.17	gi|146304393|ref|YP_001191709.1|	-	0.43	10.6	7.8	0.73	9.8	0.9	2.2	2	0	0	2	2	2	0	Seryl-tRNA	synthetase	N-terminal	domain
Syntaxin	PF00804.20	gi|146304393|ref|YP_001191709.1|	-	0.44	10.7	5.6	3.1	8.0	3.9	2.0	1	1	0	1	1	1	0	Syntaxin
Flagellin_N	PF00669.15	gi|146304393|ref|YP_001191709.1|	-	0.58	9.9	6.7	2.4	7.9	0.2	2.1	2	0	0	2	2	2	0	Bacterial	flagellin	N-terminal	helical	region
Rab5-bind	PF09311.6	gi|146304393|ref|YP_001191709.1|	-	0.58	10.0	6.6	7.6	6.3	4.6	2.0	1	1	0	1	1	1	0	Rabaptin-like	protein
YscO	PF07321.7	gi|146304393|ref|YP_001191709.1|	-	0.66	9.7	8.1	1.5	8.6	1.7	2.1	2	0	0	2	2	2	0	Type	III	secretion	protein	YscO
ATP-synt_B	PF00430.13	gi|146304393|ref|YP_001191709.1|	-	0.87	9.3	11.8	0.35	10.6	2.9	2.2	2	0	0	2	2	2	0	ATP	synthase	B/B'	CF(0)
Phage_tail_S	PF05069.8	gi|146304393|ref|YP_001191709.1|	-	1.4	8.6	5.2	1.1	9.0	0.5	2.1	2	0	0	2	2	2	0	Phage	virion	morphogenesis	family
WXG100	PF06013.7	gi|146304393|ref|YP_001191709.1|	-	1.5	8.8	5.6	9.3	6.3	0.6	2.5	2	0	0	2	2	2	0	Proteins	of	100	residues	with	WXG
DUF4200	PF13863.1	gi|146304393|ref|YP_001191709.1|	-	2	8.3	7.1	4.9	7.1	1.4	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4200)
SRP54	PF00448.17	gi|146304394|ref|YP_001191710.1|	-	8.3e-73	244.0	0.1	1.1e-72	243.5	0.1	1.2	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP54_N	PF02881.14	gi|146304394|ref|YP_001191710.1|	-	6.7e-10	38.9	11.9	7.3e-10	38.8	4.8	2.7	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
cobW	PF02492.14	gi|146304394|ref|YP_001191710.1|	-	2.9e-07	30.1	0.1	6e-07	29.0	0.1	1.5	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_30	PF13604.1	gi|146304394|ref|YP_001191710.1|	-	3.6e-06	26.7	0.1	6e-06	25.9	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|146304394|ref|YP_001191710.1|	-	3.8e-06	25.8	0.4	0.00014	20.7	0.3	2.4	1	1	0	1	1	1	1	ArgK	protein
AAA_22	PF13401.1	gi|146304394|ref|YP_001191710.1|	-	1.5e-05	25.1	0.1	7.4e-05	22.9	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
AAA_33	PF13671.1	gi|146304394|ref|YP_001191710.1|	-	0.0004	20.2	0.2	0.0014	18.5	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
MobB	PF03205.9	gi|146304394|ref|YP_001191710.1|	-	0.00094	18.9	0.2	0.0059	16.3	0.0	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_14	PF13173.1	gi|146304394|ref|YP_001191710.1|	-	0.0014	18.5	0.0	0.0041	17.0	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
CbiA	PF01656.18	gi|146304394|ref|YP_001191710.1|	-	0.0015	17.9	2.1	0.0015	17.9	1.4	2.9	2	2	0	2	2	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
DUF2075	PF09848.4	gi|146304394|ref|YP_001191710.1|	-	0.0016	17.4	0.3	0.0039	16.2	0.0	1.7	1	1	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2075)
NTPase_1	PF03266.10	gi|146304394|ref|YP_001191710.1|	-	0.0023	17.6	2.3	0.25	11.0	0.1	3.0	1	1	2	3	3	3	1	NTPase
AAA	PF00004.24	gi|146304394|ref|YP_001191710.1|	-	0.0073	16.5	0.1	0.029	14.5	0.1	2.0	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_16	PF13191.1	gi|146304394|ref|YP_001191710.1|	-	0.0091	15.9	3.7	0.015	15.2	0.0	2.7	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_31	PF13614.1	gi|146304394|ref|YP_001191710.1|	-	0.012	15.5	1.2	6.8	6.6	0.0	3.9	4	0	0	4	4	4	0	AAA	domain
AAA_28	PF13521.1	gi|146304394|ref|YP_001191710.1|	-	0.014	15.3	0.1	0.079	12.9	0.0	2.3	1	1	1	2	2	2	0	AAA	domain
DUF258	PF03193.11	gi|146304394|ref|YP_001191710.1|	-	0.018	14.2	0.0	0.034	13.3	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ArsA_ATPase	PF02374.10	gi|146304394|ref|YP_001191710.1|	-	0.021	13.8	0.1	0.068	12.2	0.0	1.9	2	0	0	2	2	2	0	Anion-transporting	ATPase
ABC_tran	PF00005.22	gi|146304394|ref|YP_001191710.1|	-	0.021	15.0	0.9	0.61	10.3	0.0	2.4	1	1	0	2	2	2	0	ABC	transporter
Zeta_toxin	PF06414.7	gi|146304394|ref|YP_001191710.1|	-	0.023	13.8	0.1	0.058	12.4	0.0	1.7	1	0	0	1	1	1	0	Zeta	toxin
APS_kinase	PF01583.15	gi|146304394|ref|YP_001191710.1|	-	0.027	14.1	0.6	0.12	12.0	0.0	2.3	3	0	0	3	3	3	0	Adenylylsulphate	kinase
Arch_ATPase	PF01637.13	gi|146304394|ref|YP_001191710.1|	-	0.035	13.8	0.1	0.035	13.8	0.1	2.4	1	1	1	2	2	2	0	Archaeal	ATPase
KTI12	PF08433.5	gi|146304394|ref|YP_001191710.1|	-	0.038	13.1	0.0	0.038	13.1	0.0	2.2	3	0	0	3	3	3	0	Chromatin	associated	protein	KTI12
Peripla_BP_4	PF13407.1	gi|146304394|ref|YP_001191710.1|	-	0.046	13.0	1.8	0.64	9.3	0.1	2.8	2	1	1	3	3	3	0	Periplasmic	binding	protein	domain
NACHT	PF05729.7	gi|146304394|ref|YP_001191710.1|	-	0.055	13.1	0.8	0.25	10.9	0.0	2.4	3	0	0	3	3	3	0	NACHT	domain
Thymidylate_kin	PF02223.12	gi|146304394|ref|YP_001191710.1|	-	0.086	12.2	3.4	0.17	11.2	0.0	2.7	3	1	0	3	3	2	0	Thymidylate	kinase
AAA_29	PF13555.1	gi|146304394|ref|YP_001191710.1|	-	0.1	12.1	0.0	0.22	11.1	0.0	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MSA-2c	PF12238.3	gi|146304394|ref|YP_001191710.1|	-	0.35	10.5	8.9	0.63	9.6	6.2	1.4	1	0	0	1	1	1	0	Merozoite	surface	antigen	2c
DUF4106	PF13388.1	gi|146304394|ref|YP_001191710.1|	-	0.39	9.6	5.4	0.66	8.8	3.8	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4106)
AAA_10	PF12846.2	gi|146304394|ref|YP_001191710.1|	-	1.2	8.5	3.6	1.7	7.9	0.3	2.3	2	1	0	2	2	2	0	AAA-like	domain
DUF935	PF06074.7	gi|146304394|ref|YP_001191710.1|	-	2.3	6.8	5.9	3.3	6.2	4.1	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF935)
AAA_17	PF13207.1	gi|146304394|ref|YP_001191710.1|	-	6.5	7.5	6.6	1.5	9.6	0.3	2.7	2	1	0	2	2	2	0	AAA	domain
Lambda_CIII	PF02061.11	gi|146304395|ref|YP_001191711.1|	-	0.012	15.5	0.5	0.018	14.9	0.3	1.2	1	0	0	1	1	1	0	Lambda	Phage	CIII
PsbI	PF02532.9	gi|146304395|ref|YP_001191711.1|	-	0.54	9.9	4.4	0.77	9.4	3.0	1.2	1	0	0	1	1	1	0	Photosystem	II	reaction	centre	I	protein	(PSII	4.8	kDa	protein)
Spt5-NGN	PF03439.8	gi|146304396|ref|YP_001191712.1|	-	5.4e-24	83.7	0.0	8.6e-24	83.1	0.0	1.3	1	0	0	1	1	1	1	Early	transcription	elongation	factor	of	RNA	pol	II,	NGN	section
KOW	PF00467.24	gi|146304396|ref|YP_001191712.1|	-	2.6e-05	23.7	0.2	0.00012	21.6	0.0	2.2	2	0	0	2	2	2	1	KOW	motif
NusG	PF02357.14	gi|146304396|ref|YP_001191712.1|	-	0.00091	19.4	0.0	0.0029	17.7	0.0	1.9	1	1	0	1	1	1	1	Transcription	termination	factor	nusG
Ribosomal_L11_N	PF03946.9	gi|146304397|ref|YP_001191713.1|	-	3e-21	74.6	1.3	5e-21	73.9	0.7	1.6	1	1	0	1	1	1	1	Ribosomal	protein	L11,	N-terminal	domain
Ribosomal_L11	PF00298.14	gi|146304397|ref|YP_001191713.1|	-	5.3e-21	74.5	2.2	9.5e-21	73.7	1.5	1.4	1	0	0	1	1	1	1	Ribosomal	protein	L11,	RNA	binding	domain
HsbA	PF12296.3	gi|146304397|ref|YP_001191713.1|	-	0.052	13.4	1.0	0.34	10.7	0.7	2.1	1	1	0	1	1	1	0	Hydrophobic	surface	binding	protein	A
Ribosomal_L1	PF00687.16	gi|146304398|ref|YP_001191714.1|	-	2.4e-37	128.4	0.3	2.9e-37	128.1	0.2	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L1p/L10e	family
Ribosomal_L10	PF00466.15	gi|146304399|ref|YP_001191715.1|	-	4.9e-27	93.7	1.4	3.1e-26	91.2	0.3	2.5	2	0	0	2	2	2	1	Ribosomal	protein	L10
DUF1071	PF06378.6	gi|146304399|ref|YP_001191715.1|	-	0.091	11.9	0.1	0.19	10.8	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1071)
7TMR-HDED	PF07697.6	gi|146304399|ref|YP_001191715.1|	-	0.13	11.9	0.1	0.13	11.9	0.0	1.9	3	0	0	3	3	3	0	7TM-HD	extracellular
Ribosomal_60s	PF00428.14	gi|146304399|ref|YP_001191715.1|	-	0.17	12.3	7.7	0.41	11.0	5.4	1.8	1	1	0	1	1	1	0	60s	Acidic	ribosomal	protein
Ribosomal_60s	PF00428.14	gi|146304400|ref|YP_001191716.1|	-	1.3e-18	67.2	14.8	1.4e-18	67.0	10.3	1.1	1	0	0	1	1	1	1	60s	Acidic	ribosomal	protein
PepSY_2	PF13670.1	gi|146304400|ref|YP_001191716.1|	-	0.0039	17.0	2.8	0.54	10.2	0.1	2.2	2	0	0	2	2	2	2	Peptidase	propeptide	and	YPEB	domain
VIGSSK	PF14773.1	gi|146304400|ref|YP_001191716.1|	-	0.1	12.5	1.5	0.96	9.4	0.0	2.2	2	0	0	2	2	2	0	Helicase-associated	putative	binding	domain,	C-terminal
Fmp27_WPPW	PF10359.4	gi|146304400|ref|YP_001191716.1|	-	0.23	9.8	1.5	0.33	9.3	1.0	1.4	1	1	0	1	1	1	0	RNA	pol	II	promoter	Fmp27	protein	domain
DUF3323	PF11796.3	gi|146304400|ref|YP_001191716.1|	-	0.24	10.6	3.9	1.2	8.3	0.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	N-terminus	(DUF3323)
tRNA-synt_2c	PF01411.14	gi|146304401|ref|YP_001191717.1|	-	3.9e-117	391.8	0.0	6e-117	391.2	0.0	1.3	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|146304401|ref|YP_001191717.1|	-	3.3e-13	49.2	0.9	8.6e-13	47.9	0.2	2.1	2	0	0	2	2	2	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
DHHA1	PF02272.14	gi|146304401|ref|YP_001191717.1|	-	2.3e-06	27.2	1.0	6e-06	25.8	0.7	1.8	1	0	0	1	1	1	1	DHHA1	domain
DUF4298	PF14131.1	gi|146304401|ref|YP_001191717.1|	-	0.00078	19.2	0.2	0.0037	17.1	0.1	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4298)
tRNA-synt_2e	PF02091.10	gi|146304401|ref|YP_001191717.1|	-	0.052	12.6	0.2	0.13	11.3	0.1	1.6	2	0	0	2	2	2	0	Glycyl-tRNA	synthetase	alpha	subunit
DUF434	PF04256.7	gi|146304402|ref|YP_001191718.1|	-	4.9e-23	80.2	0.0	7.3e-23	79.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF434)
m04gp34like	PF12216.3	gi|146304403|ref|YP_001191719.1|	-	0.41	9.9	7.4	1	8.6	2.0	2.4	2	0	0	2	2	2	0	Immune	evasion	protein
PQ-loop	PF04193.9	gi|146304404|ref|YP_001191720.1|	-	0.0094	15.4	0.3	0.0094	15.4	0.2	2.1	3	0	0	3	3	3	1	PQ	loop	repeat
DUF3139	PF11337.3	gi|146304406|ref|YP_001191722.1|	-	0.00036	20.7	1.0	0.00036	20.7	0.7	2.1	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3139)
DUF1628	PF07790.6	gi|146304406|ref|YP_001191722.1|	-	0.074	13.8	1.9	0.42	11.3	0.2	2.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1628)
AdoMet_dc	PF02675.10	gi|146304408|ref|YP_001191724.1|	-	1.2e-32	111.9	0.0	1.3e-32	111.8	0.0	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
ACP_syn_III_C	PF08541.5	gi|146304409|ref|YP_001191725.1|	-	3.6e-11	42.9	0.0	9.2e-11	41.6	0.0	1.7	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III	C	terminal
ACP_syn_III	PF08545.5	gi|146304409|ref|YP_001191725.1|	-	6.2e-07	28.9	2.4	1.7e-06	27.5	1.6	1.7	1	0	0	1	1	1	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
HMG_CoA_synt_C	PF08540.5	gi|146304409|ref|YP_001191725.1|	-	2.6e-05	23.8	0.1	0.0066	15.9	0.0	2.2	1	1	1	2	2	2	2	Hydroxymethylglutaryl-coenzyme	A	synthase	C	terminal
HMG_CoA_synt_N	PF01154.12	gi|146304409|ref|YP_001191725.1|	-	0.0025	17.4	0.1	0.0041	16.6	0.1	1.3	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	synthase	N	terminal
Thiolase_C	PF02803.13	gi|146304409|ref|YP_001191725.1|	-	0.016	14.6	0.0	0.048	13.0	0.0	1.8	2	0	0	2	2	2	0	Thiolase,	C-terminal	domain
Chal_sti_synt_N	PF00195.14	gi|146304409|ref|YP_001191725.1|	-	0.04	13.1	0.0	0.63	9.2	0.0	2.1	2	0	0	2	2	2	0	Chalcone	and	stilbene	synthases,	N-terminal	domain
ACP_syn_III	PF08545.5	gi|146304410|ref|YP_001191726.1|	-	1.9e-05	24.2	0.1	0.0017	18.0	0.0	2.5	2	0	0	2	2	2	1	3-Oxoacyl-[acyl-carrier-protein	(ACP)]	synthase	III
Thiolase_N	PF00108.18	gi|146304410|ref|YP_001191726.1|	-	0.0017	17.4	0.1	0.0068	15.4	0.0	1.8	2	0	0	2	2	2	1	Thiolase,	N-terminal	domain
ketoacyl-synt	PF00109.21	gi|146304410|ref|YP_001191726.1|	-	0.0025	17.3	0.1	0.0066	15.9	0.0	1.7	2	0	0	2	2	2	1	Beta-ketoacyl	synthase,	N-terminal	domain
Glyco_trans_4_4	PF13579.1	gi|146304410|ref|YP_001191726.1|	-	0.021	14.9	0.0	0.59	10.2	0.0	2.3	2	0	0	2	2	2	0	Glycosyl	transferase	4-like	domain
Thiolase_C	PF02803.13	gi|146304410|ref|YP_001191726.1|	-	0.025	14.0	0.0	0.049	13.0	0.0	1.4	1	0	0	1	1	1	0	Thiolase,	C-terminal	domain
Exo_endo_phos	PF03372.18	gi|146304410|ref|YP_001191726.1|	-	0.058	13.3	0.0	0.094	12.6	0.0	1.3	1	0	0	1	1	1	0	Endonuclease/Exonuclease/phosphatase	family
DUF35	PF01796.12	gi|146304411|ref|YP_001191727.1|	-	6.8e-15	55.0	0.6	1e-14	54.5	0.4	1.3	1	0	0	1	1	1	1	DUF35	OB-fold	domain
DUF35_N	PF12172.3	gi|146304411|ref|YP_001191727.1|	-	9.9e-11	41.2	0.3	1.7e-10	40.5	0.2	1.4	1	0	0	1	1	1	1	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
zf-RanBP	PF00641.13	gi|146304411|ref|YP_001191727.1|	-	0.00017	20.6	2.7	0.00025	20.0	1.9	1.2	1	0	0	1	1	1	1	Zn-finger	in	Ran	binding	protein	and	others
DZR	PF12773.2	gi|146304411|ref|YP_001191727.1|	-	0.0019	17.9	1.5	0.0031	17.2	1.0	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
Ribosomal_L32p	PF01783.18	gi|146304411|ref|YP_001191727.1|	-	0.017	15.3	2.3	0.025	14.7	1.2	1.6	1	1	0	1	1	1	0	Ribosomal	L32p	protein	family
TF_Zn_Ribbon	PF08271.7	gi|146304411|ref|YP_001191727.1|	-	0.14	11.4	2.6	6.6	6.1	0.1	2.4	2	0	0	2	2	2	0	TFIIB	zinc-binding
zf-ribbon_3	PF13248.1	gi|146304411|ref|YP_001191727.1|	-	0.22	10.7	5.8	0.54	9.5	4.0	1.7	1	1	0	1	1	1	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146304411|ref|YP_001191727.1|	-	0.27	10.7	5.3	5.5	6.6	0.2	2.4	1	1	1	2	2	2	0	zinc-ribbon	domain
ADK_lid	PF05191.9	gi|146304411|ref|YP_001191727.1|	-	0.29	10.8	1.9	15	5.3	0.0	2.4	2	0	0	2	2	2	0	Adenylate	kinase,	active	site	lid
Nudix_N_2	PF14803.1	gi|146304411|ref|YP_001191727.1|	-	0.32	10.7	6.0	6.3	6.5	0.2	2.8	3	0	0	3	3	3	0	Nudix	N-terminal
Herpes_UL49_1	PF03117.9	gi|146304411|ref|YP_001191727.1|	-	0.33	10.0	3.1	1.8	7.5	0.1	2.1	1	1	1	2	2	2	0	UL49	family
Zn_Tnp_IS1595	PF12760.2	gi|146304411|ref|YP_001191727.1|	-	0.49	10.2	3.7	4.9	7.0	0.1	2.2	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
A2L_zn_ribbon	PF08792.5	gi|146304411|ref|YP_001191727.1|	-	0.77	9.2	3.4	8	6.0	0.1	2.3	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
HMG-CoA_red	PF00368.13	gi|146304412|ref|YP_001191728.1|	-	1.3e-146	488.0	0.2	1.5e-146	487.8	0.2	1.0	1	0	0	1	1	1	1	Hydroxymethylglutaryl-coenzyme	A	reductase
SseB	PF07179.7	gi|146304412|ref|YP_001191728.1|	-	0.03	14.1	0.0	0.36	10.6	0.0	2.2	2	0	0	2	2	2	0	SseB	protein	N-terminal	domain
SHMT	PF00464.14	gi|146304413|ref|YP_001191729.1|	-	2.5e-63	213.8	0.0	3.4e-63	213.4	0.0	1.1	1	0	0	1	1	1	1	Serine	hydroxymethyltransferase
Aminotran_1_2	PF00155.16	gi|146304413|ref|YP_001191729.1|	-	2.7e-06	26.5	0.1	1.4e-05	24.1	0.0	2.2	2	1	0	2	2	2	1	Aminotransferase	class	I	and	II
Beta_elim_lyase	PF01212.16	gi|146304413|ref|YP_001191729.1|	-	3.2e-06	26.4	0.0	4e-06	26.1	0.0	1.2	1	0	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_5	PF00266.14	gi|146304413|ref|YP_001191729.1|	-	0.00048	18.9	0.0	0.0015	17.3	0.0	1.8	2	0	0	2	2	2	1	Aminotransferase	class-V
SelA	PF03841.8	gi|146304413|ref|YP_001191729.1|	-	0.073	11.8	0.0	0.44	9.2	0.0	2.1	1	1	0	1	1	1	0	L-seryl-tRNA	selenium	transferase
Usp	PF00582.21	gi|146304414|ref|YP_001191730.1|	-	1.9e-19	70.2	0.1	2.9e-19	69.6	0.1	1.2	1	0	0	1	1	1	1	Universal	stress	protein	family
Gp_dh_C	PF02800.15	gi|146304415|ref|YP_001191731.1|	-	1.1e-19	70.4	1.1	1.5e-19	69.9	0.7	1.3	1	0	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	C-terminal	domain
Gp_dh_N	PF00044.19	gi|146304415|ref|YP_001191731.1|	-	3.6e-19	69.2	1.1	1.2e-18	67.5	0.8	1.9	1	1	0	1	1	1	1	Glyceraldehyde	3-phosphate	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.15	gi|146304415|ref|YP_001191731.1|	-	1.8e-13	50.4	0.9	4.4e-13	49.2	0.4	1.8	1	1	0	1	1	1	1	Dihydrodipicolinate	reductase,	N-terminus
Semialdhyde_dh	PF01118.19	gi|146304415|ref|YP_001191731.1|	-	6.9e-05	23.1	0.3	0.00021	21.5	0.1	1.9	2	0	0	2	2	2	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
GFO_IDH_MocA	PF01408.17	gi|146304415|ref|YP_001191731.1|	-	0.00013	22.4	0.2	0.0006	20.3	0.0	2.1	2	1	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
NAD_binding_3	PF03447.11	gi|146304415|ref|YP_001191731.1|	-	0.00076	19.8	0.0	0.0025	18.2	0.0	1.9	1	0	0	1	1	1	1	Homoserine	dehydrogenase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|146304415|ref|YP_001191731.1|	-	0.0011	18.1	2.0	0.12	11.4	0.2	3.0	2	1	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DUF1188	PF06690.6	gi|146304415|ref|YP_001191731.1|	-	0.007	15.5	0.0	0.012	14.7	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1188)
Saccharop_dh	PF03435.13	gi|146304415|ref|YP_001191731.1|	-	0.0074	15.3	0.0	0.022	13.7	0.1	1.6	2	0	0	2	2	2	1	Saccharopine	dehydrogenase
F420_oxidored	PF03807.12	gi|146304415|ref|YP_001191731.1|	-	0.045	14.1	0.5	0.33	11.4	0.3	2.4	1	1	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
TROVE	PF05731.6	gi|146304415|ref|YP_001191731.1|	-	0.059	12.1	0.0	0.077	11.7	0.0	1.2	1	0	0	1	1	1	0	TROVE	domain
NAD_binding_2	PF03446.10	gi|146304415|ref|YP_001191731.1|	-	0.23	11.2	3.2	3.1	7.6	0.3	3.0	2	1	0	2	2	2	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PGK	PF00162.14	gi|146304416|ref|YP_001191732.1|	-	2.4e-105	352.2	0.0	2.7e-105	352.0	0.0	1.0	1	0	0	1	1	1	1	Phosphoglycerate	kinase
DUF457	PF04307.9	gi|146304418|ref|YP_001191734.1|	-	5.8e-14	51.7	18.7	1.1e-13	50.7	11.4	2.6	1	1	1	2	2	2	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
UPF0051	PF01458.12	gi|146304419|ref|YP_001191735.1|	-	3.3e-44	151.0	0.3	4e-44	150.7	0.2	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
CEP1-DNA_bind	PF09287.5	gi|146304419|ref|YP_001191735.1|	-	0.025	13.9	0.1	0.077	12.4	0.0	1.8	2	0	0	2	2	2	0	CEP-1,	DNA	binding
Hexapep	PF00132.19	gi|146304419|ref|YP_001191735.1|	-	0.079	12.4	0.2	0.36	10.4	0.1	2.2	2	0	0	2	2	2	0	Bacterial	transferase	hexapeptide	(six	repeats)
UPF0051	PF01458.12	gi|146304420|ref|YP_001191736.1|	-	6.5e-60	202.4	0.0	8.2e-60	202.1	0.0	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	family	(UPF0051)
ABC_tran	PF00005.22	gi|146304421|ref|YP_001191737.1|	-	3e-23	82.6	0.1	4.1e-23	82.1	0.1	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.1	gi|146304421|ref|YP_001191737.1|	-	8.8e-11	42.3	0.1	1.1e-09	38.7	0.1	2.0	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146304421|ref|YP_001191737.1|	-	3.9e-06	26.2	0.1	2e-05	23.9	0.1	1.9	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.1	gi|146304421|ref|YP_001191737.1|	-	0.00034	20.0	0.1	0.00082	18.8	0.1	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF258	PF03193.11	gi|146304421|ref|YP_001191737.1|	-	0.0031	16.7	0.1	0.0056	15.8	0.1	1.5	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
AAA_23	PF13476.1	gi|146304421|ref|YP_001191737.1|	-	0.0051	17.1	0.6	0.0064	16.8	0.4	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|146304421|ref|YP_001191737.1|	-	0.0091	15.4	0.0	0.018	14.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146304421|ref|YP_001191737.1|	-	0.019	14.8	0.0	0.025	14.4	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_13	PF13166.1	gi|146304421|ref|YP_001191737.1|	-	0.021	13.3	0.1	0.07	11.5	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
AAA_14	PF13173.1	gi|146304421|ref|YP_001191737.1|	-	0.032	14.1	0.0	0.097	12.5	0.0	1.7	1	1	1	2	2	2	0	AAA	domain
AAA_17	PF13207.1	gi|146304421|ref|YP_001191737.1|	-	0.036	14.9	0.1	0.1	13.4	0.0	1.8	2	0	0	2	2	2	0	AAA	domain
AAA	PF00004.24	gi|146304421|ref|YP_001191737.1|	-	0.067	13.3	0.1	0.1	12.7	0.0	1.5	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_18	PF13238.1	gi|146304421|ref|YP_001191737.1|	-	0.12	12.6	3.2	0.97	9.7	0.2	2.8	1	1	1	3	3	3	0	AAA	domain
Antitoxin-MazE	PF04014.13	gi|146304422|ref|YP_001191738.1|	-	8.5e-09	34.9	0.2	3e-08	33.2	0.1	2.0	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
DUF1268	PF06896.6	gi|146304422|ref|YP_001191738.1|	-	0.028	14.7	5.0	1.9	8.8	0.3	3.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF1268)
ParcG	PF10274.4	gi|146304422|ref|YP_001191738.1|	-	0.031	14.1	1.0	0.031	14.1	0.7	1.7	2	0	0	2	2	2	0	Parkin	co-regulated	protein
HSP20	PF00011.16	gi|146304423|ref|YP_001191739.1|	-	0.00011	22.0	0.5	0.0031	17.3	0.3	2.2	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
DUF4097	PF13349.1	gi|146304423|ref|YP_001191739.1|	-	0.01	15.3	0.0	0.014	14.9	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4097)
CS	PF04969.11	gi|146304423|ref|YP_001191739.1|	-	0.016	15.7	0.4	0.032	14.7	0.3	1.4	1	0	0	1	1	1	0	CS	domain
CD34_antigen	PF06365.7	gi|146304423|ref|YP_001191739.1|	-	0.043	13.4	0.4	0.044	13.4	0.3	1.2	1	0	0	1	1	1	0	CD34/Podocalyxin	family
PAC2	PF09754.4	gi|146304424|ref|YP_001191740.1|	-	7.8e-34	117.4	0.0	9.5e-34	117.1	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
GCV_H	PF01597.14	gi|146304425|ref|YP_001191741.1|	-	1.3e-43	147.5	0.2	1.5e-43	147.3	0.1	1.0	1	0	0	1	1	1	1	Glycine	cleavage	H-protein
Biotin_lipoyl	PF00364.17	gi|146304425|ref|YP_001191741.1|	-	1.6e-05	24.4	0.2	2.9e-05	23.6	0.1	1.3	1	0	0	1	1	1	1	Biotin-requiring	enzyme
RnfC_N	PF13375.1	gi|146304425|ref|YP_001191741.1|	-	0.00013	21.6	0.1	0.00028	20.5	0.1	1.5	2	0	0	2	2	2	1	RnfC	Barrel	sandwich	hybrid	domain
GCV_T	PF01571.16	gi|146304426|ref|YP_001191742.1|	-	9.4e-48	162.3	0.0	1.3e-47	161.9	0.0	1.2	1	0	0	1	1	1	1	Aminomethyltransferase	folate-binding	domain
GCV_T_C	PF08669.6	gi|146304426|ref|YP_001191742.1|	-	2.3e-17	62.7	0.0	3.8e-17	62.0	0.0	1.4	1	0	0	1	1	1	1	Glycine	cleavage	T-protein	C-terminal	barrel	domain
GDC-P	PF02347.11	gi|146304427|ref|YP_001191743.1|	-	1.8e-116	389.3	0.0	2.2e-116	389.0	0.0	1.0	1	0	0	1	1	1	1	Glycine	cleavage	system	P-protein
GDC-P	PF02347.11	gi|146304428|ref|YP_001191744.1|	-	3e-16	59.1	0.0	2.8e-15	55.9	0.0	2.0	2	0	0	2	2	2	1	Glycine	cleavage	system	P-protein
Aminotran_5	PF00266.14	gi|146304428|ref|YP_001191744.1|	-	2.2e-05	23.3	0.0	5e-05	22.1	0.0	1.6	1	1	0	1	1	1	1	Aminotransferase	class-V
Beta_elim_lyase	PF01212.16	gi|146304428|ref|YP_001191744.1|	-	3.9e-05	22.9	0.0	5.4e-05	22.4	0.0	1.3	1	1	0	1	1	1	1	Beta-eliminating	lyase
Peptidase_S24	PF00717.18	gi|146304429|ref|YP_001191745.1|	-	0.0006	19.4	0.0	0.0011	18.6	0.0	1.5	1	1	0	1	1	1	1	Peptidase	S24-like
Dicty_CAR	PF05462.6	gi|146304429|ref|YP_001191745.1|	-	0.0031	16.4	0.2	0.0038	16.1	0.2	1.1	1	0	0	1	1	1	1	Slime	mold	cyclic	AMP	receptor
Cren7	PF11520.3	gi|146304430|ref|YP_001191746.1|	-	4.8e-05	22.8	1.7	0.00016	21.2	0.1	2.4	2	1	0	2	2	2	1	Chromatin	protein	Cren7
Zn-ribbon_8	PF09723.5	gi|146304430|ref|YP_001191746.1|	-	6.2e-05	22.8	1.9	0.081	12.8	0.4	2.3	2	0	0	2	2	2	2	Zinc	ribbon	domain
UPF0547	PF10571.4	gi|146304430|ref|YP_001191746.1|	-	0.00012	21.7	5.3	0.0015	18.1	3.6	2.1	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
CpXC	PF14353.1	gi|146304430|ref|YP_001191746.1|	-	0.00033	20.6	0.0	0.00052	19.9	0.0	1.2	1	0	0	1	1	1	1	CpXC	protein
zf-ribbon_3	PF13248.1	gi|146304430|ref|YP_001191746.1|	-	0.00035	19.6	6.1	0.042	13.0	0.3	2.3	2	0	0	2	2	2	2	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146304430|ref|YP_001191746.1|	-	0.00043	19.5	2.1	0.36	10.1	0.1	2.5	2	0	0	2	2	2	2	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|146304430|ref|YP_001191746.1|	-	0.00073	19.4	1.7	0.013	15.4	1.5	2.3	1	1	1	2	2	2	2	zinc-finger	binding	domain	of	transposase	IS66
zinc_ribbon_5	PF13719.1	gi|146304430|ref|YP_001191746.1|	-	0.00086	18.8	3.5	0.093	12.3	0.2	2.6	2	1	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|146304430|ref|YP_001191746.1|	-	0.0013	18.5	1.0	0.0034	17.1	0.7	1.7	1	1	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_4	PF13717.1	gi|146304430|ref|YP_001191746.1|	-	0.0036	16.9	4.3	0.25	11.0	0.4	2.6	2	1	0	2	2	2	1	zinc-ribbon	domain
DUF1610	PF07754.6	gi|146304430|ref|YP_001191746.1|	-	0.0045	17.0	8.0	0.42	10.7	1.1	2.5	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF1610)
TFIIS_C	PF01096.13	gi|146304430|ref|YP_001191746.1|	-	0.0054	16.3	3.8	0.021	14.4	0.2	2.4	2	0	0	2	2	2	1	Transcription	factor	S-II	(TFIIS)
DUF4379	PF14311.1	gi|146304430|ref|YP_001191746.1|	-	0.0068	16.1	2.0	0.021	14.6	0.2	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4379)
OrfB_Zn_ribbon	PF07282.6	gi|146304430|ref|YP_001191746.1|	-	0.0069	16.0	0.3	1.8	8.3	0.0	2.3	2	0	0	2	2	2	1	Putative	transposase	DNA-binding	domain
Cys_rich_CPXG	PF14255.1	gi|146304430|ref|YP_001191746.1|	-	0.0074	16.0	0.3	0.73	9.7	0.0	2.4	2	0	0	2	2	2	1	Cysteine-rich	CPXCG
Nudix_N_2	PF14803.1	gi|146304430|ref|YP_001191746.1|	-	0.0099	15.5	1.1	1.5	8.5	0.1	2.4	2	0	0	2	2	2	1	Nudix	N-terminal
Zn_Tnp_IS1595	PF12760.2	gi|146304430|ref|YP_001191746.1|	-	0.013	15.2	3.7	0.13	12.1	2.7	2.0	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-NADH-PPase	PF09297.6	gi|146304430|ref|YP_001191746.1|	-	0.014	14.8	2.2	2.5	7.6	0.0	2.2	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYDLN_acid	PF09538.5	gi|146304430|ref|YP_001191746.1|	-	0.015	15.8	1.0	5.6	7.5	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(FYDLN_acid)
zf-ZPR1	PF03367.8	gi|146304430|ref|YP_001191746.1|	-	0.019	14.1	0.0	0.029	13.5	0.0	1.3	1	0	0	1	1	1	0	ZPR1	zinc-finger	domain
zf-3CxxC	PF13695.1	gi|146304430|ref|YP_001191746.1|	-	0.019	15.1	0.8	0.033	14.4	0.1	1.8	2	0	0	2	2	2	0	Zinc-binding	domain
zinc_ribbon_2	PF13240.1	gi|146304430|ref|YP_001191746.1|	-	0.021	14.2	10.6	0.12	11.8	0.4	2.6	3	0	0	3	3	2	0	zinc-ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|146304430|ref|YP_001191746.1|	-	0.022	14.2	0.7	2.5	7.6	0.0	2.3	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Ogr_Delta	PF04606.7	gi|146304430|ref|YP_001191746.1|	-	0.031	13.9	3.2	0.91	9.2	0.1	2.2	2	0	0	2	2	2	0	Ogr/Delta-like	zinc	finger
zf-HIT	PF04438.11	gi|146304430|ref|YP_001191746.1|	-	0.039	13.5	2.1	1.2	8.8	0.0	2.1	2	0	0	2	2	2	0	HIT	zinc	finger
zf-RING_3	PF14369.1	gi|146304430|ref|YP_001191746.1|	-	0.066	13.2	1.4	2.9	7.9	0.2	2.3	2	0	0	2	2	2	0	zinc-finger
DUF1272	PF06906.6	gi|146304430|ref|YP_001191746.1|	-	0.069	13.0	0.9	3.8	7.4	0.1	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1272)
TerY-C	PF15616.1	gi|146304430|ref|YP_001191746.1|	-	0.07	13.0	0.6	5.2	6.9	0.0	2.2	2	0	0	2	2	2	0	TerY-C	metal	binding	domain
DNA_ligase_ZBD	PF03119.11	gi|146304430|ref|YP_001191746.1|	-	0.071	12.8	7.5	0.16	11.6	0.4	2.5	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ISL3	PF14690.1	gi|146304430|ref|YP_001191746.1|	-	0.099	12.6	6.9	0.92	9.5	0.1	2.4	2	1	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-TFIIB	PF13453.1	gi|146304430|ref|YP_001191746.1|	-	0.1	11.8	0.6	12	5.1	0.1	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
zf-nanos	PF05741.8	gi|146304430|ref|YP_001191746.1|	-	0.21	11.5	1.5	1.2	9.1	0.0	2.1	1	1	0	2	2	2	0	Nanos	RNA	binding	domain
zf-H2C2_2	PF13465.1	gi|146304430|ref|YP_001191746.1|	-	0.23	11.8	2.7	4.2	7.8	0.0	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
DUF329	PF03884.9	gi|146304430|ref|YP_001191746.1|	-	0.27	10.8	1.8	15	5.2	0.3	2.4	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF329)
PhnA_Zn_Ribbon	PF08274.7	gi|146304430|ref|YP_001191746.1|	-	0.29	10.9	3.7	3.2	7.6	0.2	2.2	2	0	0	2	2	2	0	PhnA	Zinc-Ribbon
Sgf11	PF08209.6	gi|146304430|ref|YP_001191746.1|	-	0.38	10.1	3.9	8.6	5.7	0.1	2.2	2	0	0	2	2	2	0	Sgf11	(transcriptional	regulation	protein)
Prim_Zn_Ribbon	PF08273.7	gi|146304430|ref|YP_001191746.1|	-	0.44	10.6	5.1	4.8	7.3	0.2	2.3	2	0	0	2	2	2	0	Zinc-binding	domain	of	primase-helicase
zf-FPG_IleRS	PF06827.9	gi|146304430|ref|YP_001191746.1|	-	0.5	10.0	3.6	4.3	7.0	0.2	2.5	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
Rubredoxin	PF00301.15	gi|146304430|ref|YP_001191746.1|	-	0.52	10.2	4.1	14	5.6	0.2	2.4	2	0	0	2	2	2	0	Rubredoxin
zf-tcix	PF14952.1	gi|146304430|ref|YP_001191746.1|	-	0.63	9.4	3.4	14	5.0	0.4	2.4	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
Ribosomal_L32p	PF01783.18	gi|146304430|ref|YP_001191746.1|	-	6	7.1	5.8	17	5.6	0.0	2.8	1	1	2	3	3	3	0	Ribosomal	L32p	protein	family
Enolase_C	PF00113.17	gi|146304431|ref|YP_001191747.1|	-	3.8e-96	321.5	0.0	4.9e-96	321.1	0.0	1.1	1	0	0	1	1	1	1	Enolase,	C-terminal	TIM	barrel	domain
Enolase_N	PF03952.11	gi|146304431|ref|YP_001191747.1|	-	2.1e-42	144.1	0.5	3.3e-42	143.5	0.4	1.3	1	0	0	1	1	1	1	Enolase,	N-terminal	domain
DUF1206	PF06724.6	gi|146304432|ref|YP_001191748.1|	-	0.058	13.1	2.1	0.058	13.1	1.4	2.1	2	0	0	2	2	2	0	Domain	of	Unknown	Function	(DUF1206)
Tetraspannin	PF00335.15	gi|146304432|ref|YP_001191748.1|	-	0.31	10.2	5.0	0.35	10.0	3.4	1.1	1	0	0	1	1	1	0	Tetraspanin	family
YfhO	PF09586.5	gi|146304432|ref|YP_001191748.1|	-	0.57	8.1	3.2	0.6	8.0	2.2	1.1	1	0	0	1	1	1	0	Bacterial	membrane	protein	YfhO
UNC-50	PF05216.8	gi|146304432|ref|YP_001191748.1|	-	0.59	9.2	5.2	0.61	9.2	3.6	1.1	1	0	0	1	1	1	0	UNC-50	family
Brr6_like_C_C	PF10104.4	gi|146304432|ref|YP_001191748.1|	-	0.7	9.4	3.8	0.31	10.5	0.3	1.9	1	1	0	2	2	2	0	Di-sulfide	bridge	nucleocytoplasmic	transport	domain
DUF3481	PF11980.3	gi|146304432|ref|YP_001191748.1|	-	2	8.2	4.0	0.52	10.1	0.9	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3481)
PrgI	PF12666.2	gi|146304432|ref|YP_001191748.1|	-	2.2	8.4	8.0	0.98	9.6	0.9	2.1	1	1	1	2	2	2	0	PrgI	family	protein
PhaP_Bmeg	PF09602.5	gi|146304433|ref|YP_001191749.1|	-	0.0031	17.3	0.3	0.0044	16.8	0.2	1.2	1	0	0	1	1	1	1	Polyhydroxyalkanoic	acid	inclusion	protein	(PhaP_Bmeg)
DUF515	PF04415.7	gi|146304433|ref|YP_001191749.1|	-	0.019	13.2	4.8	0.025	12.8	3.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF515)
PRC	PF05239.11	gi|146304433|ref|YP_001191749.1|	-	0.028	14.3	0.4	0.06	13.2	0.3	1.5	1	0	0	1	1	1	0	PRC-barrel	domain
SPX	PF03105.14	gi|146304433|ref|YP_001191749.1|	-	0.04	13.7	1.3	0.054	13.2	0.9	1.3	1	0	0	1	1	1	0	SPX	domain
Exonuc_VII_L	PF02601.10	gi|146304433|ref|YP_001191749.1|	-	0.063	12.4	2.4	0.081	12.1	1.7	1.1	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
FliT	PF05400.8	gi|146304433|ref|YP_001191749.1|	-	0.078	13.3	1.9	0.16	12.4	1.3	1.5	1	0	0	1	1	1	0	Flagellar	protein	FliT
DnaG_DnaB_bind	PF08278.6	gi|146304433|ref|YP_001191749.1|	-	0.081	13.1	0.1	0.32	11.2	0.0	1.8	1	1	1	2	2	2	0	DNA	primase	DnaG	DnaB-binding
SHOCT	PF09851.4	gi|146304433|ref|YP_001191749.1|	-	0.11	11.9	4.2	0.13	11.8	0.6	2.4	2	0	0	2	2	2	0	Short	C-terminal	domain
Nitrate_red_del	PF02613.10	gi|146304433|ref|YP_001191749.1|	-	0.12	12.1	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	Nitrate	reductase	delta	subunit
Syntaxin	PF00804.20	gi|146304433|ref|YP_001191749.1|	-	0.2	11.8	5.5	0.44	10.7	3.8	1.7	1	1	0	1	1	1	0	Syntaxin
DUF724	PF05266.9	gi|146304433|ref|YP_001191749.1|	-	0.62	9.6	8.2	0.94	9.0	5.7	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF724)
IncA	PF04156.9	gi|146304433|ref|YP_001191749.1|	-	1.2	8.6	4.3	1.6	8.2	3.0	1.2	1	0	0	1	1	1	0	IncA	protein
DUF2098	PF09871.4	gi|146304433|ref|YP_001191749.1|	-	1.5	8.8	5.2	1.1	9.2	0.0	2.7	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	archaea	(DUF2098)
DUF904	PF06005.7	gi|146304433|ref|YP_001191749.1|	-	1.7	9.0	6.6	0.58	10.4	2.7	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF904)
Snf7	PF03357.16	gi|146304434|ref|YP_001191750.1|	-	9.4e-06	25.1	3.0	9.4e-06	25.1	2.1	1.7	2	1	0	2	2	2	1	Snf7
TrmB	PF01978.14	gi|146304434|ref|YP_001191750.1|	-	0.0081	15.8	0.9	0.21	11.2	0.0	2.7	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304434|ref|YP_001191750.1|	-	0.021	14.4	0.1	0.047	13.3	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF3552	PF12072.3	gi|146304434|ref|YP_001191750.1|	-	0.097	11.8	6.7	0.96	8.6	0.0	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3552)
Acetyltransf_11	PF13720.1	gi|146304434|ref|YP_001191750.1|	-	0.12	12.6	0.7	0.32	11.2	0.2	2.1	1	1	1	2	2	2	0	Udp	N-acetylglucosamine	O-acyltransferase;	Domain	2
DUF1664	PF07889.7	gi|146304434|ref|YP_001191750.1|	-	0.39	10.5	6.2	0.65	9.8	3.5	1.9	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1664)
COG2	PF06148.6	gi|146304434|ref|YP_001191750.1|	-	0.66	9.8	3.3	1.5	8.6	0.8	2.3	2	0	0	2	2	2	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
AAA	PF00004.24	gi|146304435|ref|YP_001191751.1|	-	3.6e-41	140.4	0.1	4.2e-40	136.9	0.0	2.2	2	0	0	2	2	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
MIT	PF04212.13	gi|146304435|ref|YP_001191751.1|	-	8.8e-16	57.5	4.2	1.5e-15	56.7	2.0	2.1	2	0	0	2	2	2	1	MIT	(microtubule	interacting	and	transport)	domain
RuvB_N	PF05496.7	gi|146304435|ref|YP_001191751.1|	-	4e-09	35.8	0.0	1.6e-08	33.9	0.0	1.9	1	1	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|146304435|ref|YP_001191751.1|	-	4e-09	36.5	0.0	1.1e-08	35.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_17	PF13207.1	gi|146304435|ref|YP_001191751.1|	-	4.6e-08	33.9	1.1	2.1e-07	31.8	0.1	2.6	2	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|146304435|ref|YP_001191751.1|	-	5.3e-08	33.0	0.1	4.1e-06	26.9	0.0	3.2	1	1	1	2	2	2	1	AAA	domain
AAA_14	PF13173.1	gi|146304435|ref|YP_001191751.1|	-	8.4e-08	32.1	0.3	1.5e-06	28.1	0.0	2.8	3	0	0	3	3	3	1	AAA	domain
AAA_5	PF07728.9	gi|146304435|ref|YP_001191751.1|	-	2e-07	30.7	0.4	3.1e-06	26.9	0.0	2.9	3	1	0	3	3	3	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|146304435|ref|YP_001191751.1|	-	4.8e-07	29.3	0.1	0.024	14.0	0.0	2.6	1	1	1	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|146304435|ref|YP_001191751.1|	-	7.6e-07	29.2	0.1	0.00017	21.6	0.0	3.1	3	1	1	4	4	4	1	AAA	ATPase	domain
Vps4_C	PF09336.5	gi|146304435|ref|YP_001191751.1|	-	2.1e-06	27.5	0.1	7.3e-06	25.7	0.1	1.8	1	0	0	1	1	1	1	Vps4	C	terminal	oligomerisation	domain
ABC_tran	PF00005.22	gi|146304435|ref|YP_001191751.1|	-	7e-06	26.3	0.1	0.0023	18.2	0.0	2.4	2	0	0	2	2	2	1	ABC	transporter
Arch_ATPase	PF01637.13	gi|146304435|ref|YP_001191751.1|	-	2.1e-05	24.3	3.7	0.1	12.3	0.1	3.3	2	1	1	3	3	3	2	Archaeal	ATPase
Zeta_toxin	PF06414.7	gi|146304435|ref|YP_001191751.1|	-	2.7e-05	23.3	0.0	0.0001	21.5	0.0	2.0	2	0	0	2	2	2	1	Zeta	toxin
TIP49	PF06068.8	gi|146304435|ref|YP_001191751.1|	-	0.00015	20.6	0.0	0.00027	19.7	0.0	1.4	1	0	0	1	1	1	1	TIP49	C-terminus
AAA_33	PF13671.1	gi|146304435|ref|YP_001191751.1|	-	0.00033	20.5	0.0	0.00096	19.0	0.0	1.9	1	0	0	1	1	1	1	AAA	domain
RNA_helicase	PF00910.17	gi|146304435|ref|YP_001191751.1|	-	0.00051	20.1	0.2	0.0035	17.4	0.0	2.6	3	1	0	3	3	2	1	RNA	helicase
SKI	PF01202.17	gi|146304435|ref|YP_001191751.1|	-	0.0011	18.8	0.0	0.0032	17.3	0.0	1.8	1	0	0	1	1	1	1	Shikimate	kinase
Viral_helicase1	PF01443.13	gi|146304435|ref|YP_001191751.1|	-	0.0014	18.2	0.0	0.0023	17.4	0.0	1.4	1	0	0	1	1	1	1	Viral	(Superfamily	1)	RNA	helicase
ResIII	PF04851.10	gi|146304435|ref|YP_001191751.1|	-	0.0014	18.5	0.1	0.01	15.6	0.0	2.3	1	1	1	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_18	PF13238.1	gi|146304435|ref|YP_001191751.1|	-	0.0014	18.8	1.2	0.0059	16.9	0.0	2.7	2	2	1	3	3	2	1	AAA	domain
Mg_chelatase	PF01078.16	gi|146304435|ref|YP_001191751.1|	-	0.0015	17.6	0.0	0.0036	16.5	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA_24	PF13479.1	gi|146304435|ref|YP_001191751.1|	-	0.0018	17.8	0.0	0.0075	15.8	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
KAP_NTPase	PF07693.9	gi|146304435|ref|YP_001191751.1|	-	0.0022	17.0	0.0	0.17	10.8	0.0	2.3	1	1	1	2	2	2	1	KAP	family	P-loop	domain
IstB_IS21	PF01695.12	gi|146304435|ref|YP_001191751.1|	-	0.0055	16.1	0.0	0.011	15.2	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
DUF815	PF05673.8	gi|146304435|ref|YP_001191751.1|	-	0.0073	15.2	0.0	0.02	13.8	0.0	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Bac_DnaA	PF00308.13	gi|146304435|ref|YP_001191751.1|	-	0.0077	15.8	0.0	0.015	14.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	dnaA	protein
AAA_19	PF13245.1	gi|146304435|ref|YP_001191751.1|	-	0.0097	15.6	0.0	0.024	14.3	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
NACHT	PF05729.7	gi|146304435|ref|YP_001191751.1|	-	0.0097	15.5	0.0	0.032	13.8	0.0	2.0	1	1	1	2	2	2	1	NACHT	domain
AAA_28	PF13521.1	gi|146304435|ref|YP_001191751.1|	-	0.0099	15.8	0.1	0.048	13.6	0.0	2.3	2	1	0	2	2	1	1	AAA	domain
ATP-synt_ab	PF00006.20	gi|146304435|ref|YP_001191751.1|	-	0.01	15.3	0.0	0.02	14.3	0.0	1.6	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
TPR_11	PF13414.1	gi|146304435|ref|YP_001191751.1|	-	0.013	15.1	1.1	0.052	13.2	0.8	2.1	1	1	0	1	1	1	0	TPR	repeat
CPT	PF07931.7	gi|146304435|ref|YP_001191751.1|	-	0.031	13.9	0.1	0.15	11.7	0.0	1.9	2	0	0	2	2	2	0	Chloramphenicol	phosphotransferase-like	protein
Sigma54_activat	PF00158.21	gi|146304435|ref|YP_001191751.1|	-	0.034	13.6	0.0	0.085	12.3	0.0	1.8	1	1	0	1	1	1	0	Sigma-54	interaction	domain
NB-ARC	PF00931.17	gi|146304435|ref|YP_001191751.1|	-	0.035	12.9	0.0	0.078	11.8	0.0	1.6	1	0	0	1	1	1	0	NB-ARC	domain
Cytidylate_kin2	PF13189.1	gi|146304435|ref|YP_001191751.1|	-	0.037	13.9	0.0	0.12	12.3	0.0	1.9	1	0	0	1	1	1	0	Cytidylate	kinase-like	family
TPR_6	PF13174.1	gi|146304435|ref|YP_001191751.1|	-	0.04	14.3	0.6	0.59	10.7	0.0	2.7	2	0	0	2	2	2	0	Tetratricopeptide	repeat
Parvo_NS1	PF01057.12	gi|146304435|ref|YP_001191751.1|	-	0.041	12.7	0.1	0.1	11.4	0.0	1.6	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
AAA_3	PF07726.6	gi|146304435|ref|YP_001191751.1|	-	0.047	13.2	0.0	0.11	12.1	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_10	PF12846.2	gi|146304435|ref|YP_001191751.1|	-	0.053	12.9	0.6	23	4.2	0.0	3.4	4	0	0	4	4	4	0	AAA-like	domain
NTPase_1	PF03266.10	gi|146304435|ref|YP_001191751.1|	-	0.055	13.1	0.0	0.71	9.5	0.0	2.4	1	1	0	2	2	2	0	NTPase
CesA	PF11439.3	gi|146304435|ref|YP_001191751.1|	-	0.074	12.9	1.2	0.69	9.8	0.0	2.6	3	0	0	3	3	2	0	Type	III	secretion	system	filament	chaperone	CesA
AAA_11	PF13086.1	gi|146304435|ref|YP_001191751.1|	-	0.1	12.1	0.2	0.35	10.4	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
Sigma54_activ_2	PF14532.1	gi|146304435|ref|YP_001191751.1|	-	0.1	12.6	0.0	0.23	11.4	0.0	1.6	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA-ATPase_like	PF09820.4	gi|146304435|ref|YP_001191751.1|	-	0.11	11.6	1.1	0.2	10.8	0.0	2.0	3	0	0	3	3	3	0	Predicted	AAA-ATPase
Rad50_zn_hook	PF04423.9	gi|146304435|ref|YP_001191751.1|	-	1	8.8	5.0	33	4.0	0.2	3.6	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
AAA_23	PF13476.1	gi|146304435|ref|YP_001191751.1|	-	2.1	8.6	7.9	2.7	8.2	0.0	3.0	3	1	0	3	3	3	0	AAA	domain
RNA_pol_Rpb6	PF01192.17	gi|146304436|ref|YP_001191752.1|	-	1.2e-11	44.1	0.0	1.8e-11	43.6	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb6
Aminotran_5	PF00266.14	gi|146304437|ref|YP_001191753.1|	-	7.5e-20	70.9	0.0	9.9e-20	70.5	0.0	1.1	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|146304437|ref|YP_001191753.1|	-	3e-06	25.7	0.0	4.1e-06	25.3	0.0	1.1	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.12	gi|146304437|ref|YP_001191753.1|	-	0.032	13.2	0.0	0.057	12.4	0.0	1.3	1	0	0	1	1	1	0	DegT/DnrJ/EryC1/StrS	aminotransferase	family
2-Hacid_dh_C	PF02826.14	gi|146304438|ref|YP_001191754.1|	-	2.6e-49	166.7	0.3	5.5e-49	165.7	0.2	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.25	gi|146304438|ref|YP_001191754.1|	-	1.7e-35	121.3	0.5	2e-35	121.1	0.3	1.0	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|146304438|ref|YP_001191754.1|	-	1.4e-06	28.2	4.6	1.6e-06	28.0	1.0	2.3	2	1	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|146304438|ref|YP_001191754.1|	-	3.8e-06	26.8	1.1	3.8e-06	26.8	0.8	1.9	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
IlvN	PF07991.7	gi|146304438|ref|YP_001191754.1|	-	0.0001	21.6	0.3	0.00023	20.5	0.2	1.6	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
Ub-RnfH	PF03658.9	gi|146304438|ref|YP_001191754.1|	-	0.057	13.2	0.5	4.4	7.2	0.1	2.9	1	1	1	2	2	2	0	RnfH	family	Ubiquitin
F420_oxidored	PF03807.12	gi|146304438|ref|YP_001191754.1|	-	0.063	13.7	2.3	0.29	11.5	0.4	2.6	2	1	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
HhH-GPD	PF00730.20	gi|146304439|ref|YP_001191755.1|	-	0.0037	17.5	0.0	0.0056	16.9	0.0	1.4	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
zf-H2C2_2	PF13465.1	gi|146304441|ref|YP_001191757.1|	-	0.00032	20.8	5.8	0.45	10.8	0.7	3.2	3	0	0	3	3	3	1	Zinc-finger	double	domain
DZR	PF12773.2	gi|146304441|ref|YP_001191757.1|	-	0.0034	17.1	6.3	0.031	14.0	3.0	2.1	1	1	1	2	2	2	2	Double	zinc	ribbon
Prok-RING_1	PF14446.1	gi|146304441|ref|YP_001191757.1|	-	0.0088	15.7	6.1	0.068	12.9	1.9	2.2	2	0	0	2	2	2	1	Prokaryotic	RING	finger	family	1
DNA_ligase_ZBD	PF03119.11	gi|146304441|ref|YP_001191757.1|	-	0.02	14.5	1.6	0.43	10.3	0.2	2.6	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-C3HC4_3	PF13920.1	gi|146304441|ref|YP_001191757.1|	-	0.027	14.1	7.7	0.56	9.9	1.3	2.2	1	1	1	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
DUF1272	PF06906.6	gi|146304441|ref|YP_001191757.1|	-	0.057	13.2	6.1	0.18	11.6	4.2	2.0	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Gin	PF10764.4	gi|146304441|ref|YP_001191757.1|	-	0.073	12.7	7.5	0.11	12.1	3.2	2.3	1	1	1	2	2	2	0	Inhibitor	of	sigma-G	Gin
zf-AN1	PF01428.11	gi|146304441|ref|YP_001191757.1|	-	0.12	12.3	5.4	1.2	9.1	0.8	2.4	1	1	1	2	2	2	0	AN1-like	Zinc	finger
zinc-ribbons_6	PF07191.7	gi|146304441|ref|YP_001191757.1|	-	0.13	12.0	7.3	1.4	8.7	1.7	2.5	1	1	0	1	1	1	0	zinc-ribbons
zinc_ribbon_4	PF13717.1	gi|146304441|ref|YP_001191757.1|	-	0.22	11.2	10.4	0.32	10.7	4.9	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146304441|ref|YP_001191757.1|	-	0.26	10.9	10.0	0.65	9.6	5.0	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
C1_1	PF00130.17	gi|146304441|ref|YP_001191757.1|	-	0.26	11.0	5.2	0.26	11.0	1.0	2.1	1	1	1	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-Di19	PF05605.7	gi|146304441|ref|YP_001191757.1|	-	0.44	10.7	9.1	6.2	7.0	0.2	3.2	2	1	1	3	3	3	0	Drought	induced	19	protein	(Di19),	zinc-binding
zf-RING_3	PF14369.1	gi|146304441|ref|YP_001191757.1|	-	0.44	10.5	8.4	0.44	10.5	0.4	2.5	2	1	0	2	2	2	0	zinc-finger
zf-C2H2	PF00096.21	gi|146304441|ref|YP_001191757.1|	-	0.48	10.8	11.2	3.7	8.0	1.6	3.2	3	0	0	3	3	3	0	Zinc	finger,	C2H2	type
zf-C2H2_4	PF13894.1	gi|146304441|ref|YP_001191757.1|	-	0.48	10.8	11.7	3.1	8.3	1.3	3.2	3	0	0	3	3	3	0	C2H2-type	zinc	finger
zf-ribbon_3	PF13248.1	gi|146304441|ref|YP_001191757.1|	-	0.69	9.2	10.4	3.4	6.9	0.3	3.3	3	1	0	3	3	3	0	zinc-ribbon	domain
zf-B_box	PF00643.19	gi|146304441|ref|YP_001191757.1|	-	0.69	9.8	10.3	3	7.8	4.6	2.8	2	1	0	2	2	2	0	B-box	zinc	finger
HypA	PF01155.14	gi|146304441|ref|YP_001191757.1|	-	0.72	9.5	4.3	0.89	9.2	0.8	1.9	1	1	1	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
zf-C4_Topoisom	PF01396.14	gi|146304441|ref|YP_001191757.1|	-	0.74	9.3	7.2	4.3	6.9	0.2	2.5	3	0	0	3	3	2	0	Topoisomerase	DNA	binding	C4	zinc	finger
zinc_ribbon_2	PF13240.1	gi|146304441|ref|YP_001191757.1|	-	0.78	9.3	12.4	2.1	7.9	0.1	3.1	3	1	0	3	3	3	0	zinc-ribbon	domain
DUF4379	PF14311.1	gi|146304441|ref|YP_001191757.1|	-	1.2	9.0	6.5	0.85	9.4	3.4	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4379)
DiS_P_DiS	PF06750.8	gi|146304441|ref|YP_001191757.1|	-	1.4	8.7	4.0	14	5.5	0.0	2.7	2	1	0	2	2	2	0	Bacterial	Peptidase	A24	N-terminal	domain
FANCL_C	PF11793.3	gi|146304441|ref|YP_001191757.1|	-	1.4	8.8	0.1	1.4	8.8	0.1	2.7	2	1	0	2	2	2	0	FANCL	C-terminal	domain
zf-C2HC5	PF06221.8	gi|146304441|ref|YP_001191757.1|	-	1.5	8.6	6.5	24	4.8	4.6	2.5	1	1	1	2	2	2	0	Putative	zinc	finger	motif,	C2HC5-type
zf-BED	PF02892.10	gi|146304441|ref|YP_001191757.1|	-	1.7	8.5	10.9	5.4	6.8	0.4	3.1	1	1	2	3	3	3	0	BED	zinc	finger
zf-RING_4	PF14570.1	gi|146304441|ref|YP_001191757.1|	-	1.7	8.3	10.2	6.9	6.3	0.4	2.3	2	1	0	2	2	2	0	RING/Ubox	like	zinc-binding	domain
zf-TFIIB	PF13453.1	gi|146304441|ref|YP_001191757.1|	-	1.7	7.8	6.8	6.8	5.9	0.2	2.6	3	0	0	3	3	3	0	Transcription	factor	zinc-finger
Zn_Tnp_IS1595	PF12760.2	gi|146304441|ref|YP_001191757.1|	-	1.8	8.4	10.3	0.18	11.6	0.6	2.5	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
zf-CHY	PF05495.7	gi|146304441|ref|YP_001191757.1|	-	2.3	8.4	7.2	41	4.4	5.0	2.3	1	1	0	1	1	1	0	CHY	zinc	finger
zf-RING_2	PF13639.1	gi|146304441|ref|YP_001191757.1|	-	2.4	8.0	6.9	8	6.3	4.8	1.8	1	1	0	1	1	1	0	Ring	finger	domain
DUF329	PF03884.9	gi|146304441|ref|YP_001191757.1|	-	3	7.4	8.6	8.4	6.0	0.9	3.0	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF329)
Zn_ribbon_recom	PF13408.1	gi|146304441|ref|YP_001191757.1|	-	3.6	7.9	10.4	8.2	6.7	7.2	1.6	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
DUF4451	PF14616.1	gi|146304441|ref|YP_001191757.1|	-	3.9	7.2	6.7	4.8	6.9	0.5	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4451)
DUF164	PF02591.10	gi|146304441|ref|YP_001191757.1|	-	4.8	7.0	7.1	17	5.3	0.0	3.0	2	1	1	3	3	3	0	Putative	zinc	ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146304441|ref|YP_001191757.1|	-	5.3	6.4	9.6	4.9	6.5	0.5	2.9	3	0	0	3	3	3	0	TFIIB	zinc-binding
zf-IS66	PF13005.2	gi|146304441|ref|YP_001191757.1|	-	6.8	6.7	8.2	13	5.8	0.0	2.8	2	1	1	3	3	3	0	zinc-finger	binding	domain	of	transposase	IS66
zf-HIT	PF04438.11	gi|146304441|ref|YP_001191757.1|	-	7.4	6.3	17.8	34	4.1	7.6	3.2	2	1	0	2	2	2	0	HIT	zinc	finger
zf-MYND	PF01753.13	gi|146304441|ref|YP_001191757.1|	-	8.2	6.3	9.2	1.4e+02	2.4	6.2	2.3	1	1	0	1	1	1	0	MYND	finger
zf-LITAF-like	PF10601.4	gi|146304441|ref|YP_001191757.1|	-	8.3	6.3	8.6	14	5.6	0.4	2.9	1	1	1	3	3	3	0	LITAF-like	zinc	ribbon	domain
CpXC	PF14353.1	gi|146304441|ref|YP_001191757.1|	-	8.4	6.3	8.4	7.1	6.6	2.1	2.6	1	1	1	2	2	2	0	CpXC	protein
zf-C2H2_6	PF13912.1	gi|146304441|ref|YP_001191757.1|	-	8.5	6.4	8.7	3.2	7.7	0.1	2.9	3	0	0	3	3	3	0	C2H2-type	zinc	finger
Sgf11	PF08209.6	gi|146304441|ref|YP_001191757.1|	-	8.8	5.7	8.4	13	5.2	0.1	3.0	3	0	0	3	3	3	0	Sgf11	(transcriptional	regulation	protein)
TFIIS_C	PF01096.13	gi|146304441|ref|YP_001191757.1|	-	8.9	6.0	8.6	0.79	9.4	0.6	2.5	3	0	0	3	3	2	0	Transcription	factor	S-II	(TFIIS)
Zn-ribbon_8	PF09723.5	gi|146304441|ref|YP_001191757.1|	-	9	6.3	10.6	4.6	7.2	5.1	2.2	2	1	0	2	2	2	0	Zinc	ribbon	domain
NAD_binding_8	PF13450.1	gi|146304445|ref|YP_001191761.1|	-	0.00021	21.2	0.0	0.00042	20.2	0.0	1.5	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
3HCDH_N	PF02737.13	gi|146304445|ref|YP_001191761.1|	-	0.0011	18.6	0.0	0.0019	17.8	0.0	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
ApbA	PF02558.11	gi|146304445|ref|YP_001191761.1|	-	0.0024	17.3	0.1	0.0038	16.6	0.1	1.3	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
Pyr_redox	PF00070.22	gi|146304445|ref|YP_001191761.1|	-	0.0024	18.2	0.1	0.0078	16.6	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_Gly3P_dh_N	PF01210.18	gi|146304445|ref|YP_001191761.1|	-	0.021	14.5	0.0	0.035	13.8	0.0	1.3	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
UDPG_MGDP_dh_N	PF03721.9	gi|146304445|ref|YP_001191761.1|	-	0.058	12.7	0.1	0.096	12.0	0.0	1.3	1	0	0	1	1	1	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
FAD_binding_3	PF01494.14	gi|146304445|ref|YP_001191761.1|	-	0.063	12.3	0.1	0.14	11.1	0.1	1.6	2	0	0	2	2	2	0	FAD	binding	domain
DAO	PF01266.19	gi|146304445|ref|YP_001191761.1|	-	0.2	10.5	1.0	0.38	9.5	0.7	1.4	1	0	0	1	1	1	0	FAD	dependent	oxidoreductase
tRNA-synt_1	PF00133.17	gi|146304446|ref|YP_001191762.1|	-	1.6e-126	422.7	0.0	1.6e-125	419.4	0.0	2.1	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|146304446|ref|YP_001191762.1|	-	3.9e-30	104.6	1.3	9.2e-30	103.4	0.9	1.7	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|146304446|ref|YP_001191762.1|	-	5.7e-29	100.9	0.0	2.8e-13	49.2	0.0	3.6	3	1	0	3	3	3	3	tRNA	synthetases	class	I	(M)
tRNA-synt_1_2	PF13603.1	gi|146304446|ref|YP_001191762.1|	-	3.3e-06	26.5	0.0	0.00014	21.1	0.0	3.0	1	1	1	2	2	2	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1d	PF00750.14	gi|146304446|ref|YP_001191762.1|	-	0.0002	20.3	0.0	0.0097	14.7	0.0	2.5	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(R)
tRNA-synt_1e	PF01406.14	gi|146304446|ref|YP_001191762.1|	-	0.00082	18.5	0.0	0.44	9.6	0.0	2.5	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(C)	catalytic	domain
NTP_transf_5	PF14907.1	gi|146304446|ref|YP_001191762.1|	-	0.015	14.6	0.1	4.6	6.4	0.0	2.4	2	0	0	2	2	2	0	Uncharacterised	nucleotidyltransferase
Aminotran_1_2	PF00155.16	gi|146304447|ref|YP_001191763.1|	-	9.9e-72	241.8	0.0	1.1e-71	241.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
DegT_DnrJ_EryC1	PF01041.12	gi|146304447|ref|YP_001191763.1|	-	3.3e-08	32.9	0.0	4.6e-08	32.4	0.0	1.2	1	0	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Aminotran_5	PF00266.14	gi|146304447|ref|YP_001191763.1|	-	0.00098	17.9	0.0	0.0019	17.0	0.0	1.4	1	0	0	1	1	1	1	Aminotransferase	class-V
Cys_Met_Meta_PP	PF01053.15	gi|146304447|ref|YP_001191763.1|	-	0.0083	14.4	0.0	0.013	13.8	0.0	1.2	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
IGPS	PF00218.16	gi|146304448|ref|YP_001191764.1|	-	2.1e-71	239.9	0.0	2.3e-71	239.8	0.0	1.0	1	0	0	1	1	1	1	Indole-3-glycerol	phosphate	synthase
His_biosynth	PF00977.16	gi|146304448|ref|YP_001191764.1|	-	9.7e-07	28.2	0.1	0.00066	19.0	0.0	2.6	1	1	2	3	3	3	2	Histidine	biosynthesis	protein
NanE	PF04131.9	gi|146304448|ref|YP_001191764.1|	-	0.00011	21.1	0.1	0.0015	17.5	0.0	2.4	1	1	1	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
ThiG	PF05690.9	gi|146304448|ref|YP_001191764.1|	-	0.052	12.6	0.0	3	6.8	0.0	2.1	2	0	0	2	2	2	0	Thiazole	biosynthesis	protein	ThiG
FMN_dh	PF01070.13	gi|146304448|ref|YP_001191764.1|	-	0.08	11.7	0.0	0.7	8.6	0.0	2.0	2	0	0	2	2	2	0	FMN-dependent	dehydrogenase
Herpes_teg_N	PF04843.7	gi|146304448|ref|YP_001191764.1|	-	0.13	11.7	0.0	0.26	10.6	0.0	1.5	1	1	0	1	1	1	0	Herpesvirus	tegument	protein,	N-terminal	conserved	region
GATase	PF00117.23	gi|146304449|ref|YP_001191765.1|	-	7.8e-49	165.7	0.0	8.6e-49	165.5	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146304449|ref|YP_001191765.1|	-	3.4e-10	39.7	0.0	8.6e-10	38.4	0.0	1.6	1	1	0	1	1	1	1	Peptidase	C26
SNO	PF01174.14	gi|146304449|ref|YP_001191765.1|	-	0.0064	16.1	0.0	0.012	15.2	0.0	1.4	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Chorismate_bind	PF00425.13	gi|146304450|ref|YP_001191766.1|	-	4.4e-92	308.0	0.0	5.9e-92	307.6	0.0	1.2	1	0	0	1	1	1	1	chorismate	binding	enzyme
Anth_synt_I_N	PF04715.8	gi|146304450|ref|YP_001191766.1|	-	8.5e-22	77.6	0.0	2.4e-21	76.2	0.0	1.8	1	0	0	1	1	1	1	Anthranilate	synthase	component	I,	N	terminal	region
PRAI	PF00697.17	gi|146304451|ref|YP_001191767.1|	-	3.7e-25	88.6	0.0	4.3e-25	88.4	0.0	1.0	1	0	0	1	1	1	1	N-(5'phosphoribosyl)anthranilate	(PRA)	isomerase
Glycos_transf_3	PF00591.16	gi|146304452|ref|YP_001191768.1|	-	2e-68	230.5	0.0	2.6e-68	230.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family,	a/b	domain
Glycos_trans_3N	PF02885.12	gi|146304452|ref|YP_001191768.1|	-	6.6e-20	70.4	0.0	1.2e-19	69.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family,	helical	bundle	domain
YonK	PF09642.5	gi|146304452|ref|YP_001191768.1|	-	0.11	12.1	0.2	0.29	10.8	0.1	1.6	1	0	0	1	1	1	0	YonK	protein
Trp_syntA	PF00290.15	gi|146304453|ref|YP_001191769.1|	-	3.8e-37	127.2	0.0	4.5e-37	126.9	0.0	1.0	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
His_biosynth	PF00977.16	gi|146304453|ref|YP_001191769.1|	-	2.6e-06	26.8	0.2	9e-06	25.1	0.2	1.8	2	0	0	2	2	2	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|146304453|ref|YP_001191769.1|	-	0.0001	21.6	0.1	0.00016	20.9	0.0	1.3	1	0	0	1	1	1	1	PcrB	family
TMP-TENI	PF02581.12	gi|146304453|ref|YP_001191769.1|	-	0.0037	16.4	0.0	0.007	15.5	0.0	1.4	1	0	0	1	1	1	1	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|146304453|ref|YP_001191769.1|	-	0.0046	16.1	0.0	0.0076	15.4	0.0	1.3	1	0	0	1	1	1	1	Nitronate	monooxygenase
Ribul_P_3_epim	PF00834.14	gi|146304453|ref|YP_001191769.1|	-	0.019	14.0	0.0	0.028	13.5	0.0	1.3	1	0	0	1	1	1	0	Ribulose-phosphate	3	epimerase	family
PALP	PF00291.20	gi|146304454|ref|YP_001191770.1|	-	3.6e-38	131.5	0.0	4.5e-38	131.1	0.0	1.1	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Acylphosphatase	PF00708.13	gi|146304455|ref|YP_001191771.1|	-	8.2e-28	96.3	0.0	8.7e-28	96.2	0.0	1.0	1	0	0	1	1	1	1	Acylphosphatase
NAD_binding_5	PF07994.7	gi|146304456|ref|YP_001191772.1|	-	6.3e-49	167.0	0.0	2.1e-48	165.3	0.0	1.7	1	1	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|146304456|ref|YP_001191772.1|	-	3e-30	104.3	0.0	4.7e-30	103.7	0.0	1.3	1	0	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
FERM_N	PF09379.5	gi|146304456|ref|YP_001191772.1|	-	0.15	12.1	0.3	17	5.5	0.1	2.6	2	0	0	2	2	2	0	FERM	N-terminal	domain
PPDK_N	PF01326.14	gi|146304457|ref|YP_001191773.1|	-	7.8e-105	350.5	0.1	4.2e-104	348.1	0.1	1.8	2	0	0	2	2	2	1	Pyruvate	phosphate	dikinase,	PEP/pyruvate	binding	domain
PEP-utilizers_C	PF02896.13	gi|146304457|ref|YP_001191773.1|	-	5.6e-79	265.0	0.0	8.8e-79	264.4	0.0	1.3	1	0	0	1	1	1	1	PEP-utilising	enzyme,	TIM	barrel	domain
PEP-utilizers	PF00391.18	gi|146304457|ref|YP_001191773.1|	-	8.4e-29	98.9	1.0	1.9e-28	97.8	0.7	1.6	1	0	0	1	1	1	1	PEP-utilising	enzyme,	mobile	domain
Snf7	PF03357.16	gi|146304458|ref|YP_001191774.1|	-	2e-07	30.5	8.2	3.1e-07	29.9	5.7	1.3	1	1	0	1	1	1	1	Snf7
LOH1CR12	PF10158.4	gi|146304458|ref|YP_001191774.1|	-	0.0015	18.2	1.2	0.0037	17.0	0.5	1.8	1	1	0	1	1	1	1	Tumour	suppressor	protein
DivIVA	PF05103.8	gi|146304458|ref|YP_001191774.1|	-	0.0054	16.7	7.7	0.12	12.3	1.6	2.2	1	1	1	2	2	2	2	DivIVA	protein
UbiD	PF01977.11	gi|146304460|ref|YP_001191776.1|	-	2.4e-135	451.1	0.0	2.8e-135	450.9	0.0	1.0	1	0	0	1	1	1	1	3-octaprenyl-4-hydroxybenzoate	carboxy-lyase
PALP	PF00291.20	gi|146304461|ref|YP_001191777.1|	-	2.2e-70	237.3	1.4	2.6e-70	237.1	1.0	1.0	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
PK_C	PF02887.11	gi|146304461|ref|YP_001191777.1|	-	0.044	13.3	1.7	0.12	11.9	0.1	2.3	3	0	0	3	3	3	0	Pyruvate	kinase,	alpha/beta	domain
HypA	PF01155.14	gi|146304461|ref|YP_001191777.1|	-	0.071	12.7	0.5	0.12	12.0	0.3	1.4	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
DZR	PF12773.2	gi|146304461|ref|YP_001191777.1|	-	0.1	12.4	0.2	0.16	11.8	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
AA_kinase	PF00696.23	gi|146304462|ref|YP_001191778.1|	-	1.2e-45	155.9	0.0	2.1e-45	155.1	0.0	1.4	1	0	0	1	1	1	1	Amino	acid	kinase	family
ACT_7	PF13840.1	gi|146304462|ref|YP_001191778.1|	-	6.4e-06	25.6	0.1	2.8e-05	23.5	0.1	2.2	1	0	0	1	1	1	1	ACT	domain
ACT	PF01842.20	gi|146304462|ref|YP_001191778.1|	-	0.0017	17.7	2.9	0.0024	17.3	0.2	2.6	3	0	0	3	3	3	1	ACT	domain
T2SM	PF04612.7	gi|146304462|ref|YP_001191778.1|	-	0.14	11.9	0.1	0.43	10.3	0.0	1.7	2	0	0	2	2	2	0	Type	II	secretion	system	(T2SS),	protein	M
Semialdhyde_dh	PF01118.19	gi|146304463|ref|YP_001191779.1|	-	1.1e-31	109.5	0.0	2e-31	108.7	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Semialdhyde_dhC	PF02774.13	gi|146304463|ref|YP_001191779.1|	-	2.3e-26	92.7	0.0	3.4e-26	92.2	0.0	1.2	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	dimerisation	domain
NAD_binding_10	PF13460.1	gi|146304463|ref|YP_001191779.1|	-	0.0068	16.4	0.0	0.015	15.2	0.0	1.6	1	1	0	1	1	1	1	NADH(P)-binding
DapB_N	PF01113.15	gi|146304463|ref|YP_001191779.1|	-	0.013	15.4	0.0	0.03	14.2	0.0	1.7	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
PHP_C	PF13263.1	gi|146304464|ref|YP_001191780.1|	-	1.8e-15	56.1	0.1	4.1e-15	55.0	0.1	1.7	2	0	0	2	2	2	1	PHP-associated
PHP	PF02811.14	gi|146304464|ref|YP_001191780.1|	-	1.7e-08	34.4	0.0	2.8e-08	33.7	0.0	1.6	1	1	0	1	1	1	1	PHP	domain
DUF650	PF04894.7	gi|146304465|ref|YP_001191781.1|	-	4.2e-94	315.0	0.0	5.3e-94	314.7	0.0	1.1	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF650)
DUF651	PF04895.7	gi|146304465|ref|YP_001191781.1|	-	2.8e-31	107.4	0.1	4.4e-31	106.7	0.1	1.3	1	0	0	1	1	1	1	Archaeal	protein	of	unknown	function	(DUF651)
OTCace	PF00185.19	gi|146304466|ref|YP_001191782.1|	-	2.2e-47	160.8	0.0	3.7e-47	160.1	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
OTCace_N	PF02729.16	gi|146304466|ref|YP_001191782.1|	-	6.4e-42	142.5	0.0	8.9e-42	142.1	0.0	1.2	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
Lipid_DES	PF08557.5	gi|146304466|ref|YP_001191782.1|	-	0.037	13.2	0.0	0.066	12.4	0.0	1.4	1	0	0	1	1	1	0	Sphingolipid	Delta4-desaturase	(DES)
HTH_24	PF13412.1	gi|146304467|ref|YP_001191783.1|	-	3.2e-06	26.4	0.0	2e-05	23.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|146304467|ref|YP_001191783.1|	-	1.3e-05	25.3	0.1	3.2e-05	24.1	0.0	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|146304467|ref|YP_001191783.1|	-	0.00035	20.4	0.0	0.00062	19.6	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.17	gi|146304467|ref|YP_001191783.1|	-	0.00046	19.8	0.1	0.0012	18.5	0.1	1.7	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.1	gi|146304467|ref|YP_001191783.1|	-	0.00061	19.5	0.0	0.0013	18.5	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
PaaX	PF07848.7	gi|146304467|ref|YP_001191783.1|	-	0.0016	18.3	0.7	0.0098	15.8	0.1	2.3	2	0	0	2	2	2	1	PaaX-like	protein
HTH_29	PF13551.1	gi|146304467|ref|YP_001191783.1|	-	0.0018	18.3	0.0	0.01	15.9	0.0	2.1	1	1	1	2	2	2	1	Winged	helix-turn	helix
HTH_5	PF01022.15	gi|146304467|ref|YP_001191783.1|	-	0.0027	17.3	0.1	0.0052	16.4	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.14	gi|146304467|ref|YP_001191783.1|	-	0.0043	16.7	0.0	0.01	15.5	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.2	gi|146304467|ref|YP_001191783.1|	-	0.011	15.5	0.0	0.02	14.6	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304467|ref|YP_001191783.1|	-	0.012	15.2	0.0	0.023	14.3	0.0	1.5	1	0	0	1	1	1	0	MarR	family
DUF2336	PF10098.4	gi|146304467|ref|YP_001191783.1|	-	0.012	14.9	0.0	0.062	12.5	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2336)
HTH_36	PF13730.1	gi|146304467|ref|YP_001191783.1|	-	0.013	15.5	0.0	0.025	14.7	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
DUF4093	PF13331.1	gi|146304467|ref|YP_001191783.1|	-	0.02	15.0	0.0	0.041	14.0	0.0	1.5	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4093)
HTH_11	PF08279.7	gi|146304467|ref|YP_001191783.1|	-	0.022	14.3	0.0	0.059	13.0	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
Penicillinase_R	PF03965.11	gi|146304467|ref|YP_001191783.1|	-	0.04	14.0	0.2	0.071	13.2	0.1	1.4	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_12	PF08461.5	gi|146304467|ref|YP_001191783.1|	-	0.056	13.1	0.1	0.15	11.8	0.1	1.8	1	0	0	1	1	1	0	Ribonuclease	R	winged-helix	domain
Ribosomal_S19e	PF01090.14	gi|146304467|ref|YP_001191783.1|	-	0.058	12.8	0.1	0.18	11.1	0.1	1.7	2	0	0	2	2	2	0	Ribosomal	protein	S19e
HTH_IclR	PF09339.5	gi|146304467|ref|YP_001191783.1|	-	0.06	12.9	0.1	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|146304467|ref|YP_001191783.1|	-	0.096	12.4	0.6	0.27	11.0	0.0	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|146304467|ref|YP_001191783.1|	-	0.11	12.4	0.1	0.18	11.7	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
FeoC	PF09012.5	gi|146304467|ref|YP_001191783.1|	-	0.12	12.1	0.1	0.4	10.4	0.0	1.8	2	0	0	2	2	2	0	FeoC	like	transcriptional	regulator
DUF4423	PF14394.1	gi|146304467|ref|YP_001191783.1|	-	0.14	11.7	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
NAD_kinase	PF01513.16	gi|146304468|ref|YP_001191784.1|	-	1.5e-57	194.5	0.0	1.7e-57	194.4	0.0	1.0	1	0	0	1	1	1	1	ATP-NAD	kinase
DAGK_cat	PF00781.19	gi|146304468|ref|YP_001191784.1|	-	0.0035	16.7	0.3	0.019	14.3	0.1	2.1	2	0	0	2	2	2	1	Diacylglycerol	kinase	catalytic	domain
PFK	PF00365.15	gi|146304468|ref|YP_001191784.1|	-	0.063	12.2	0.1	0.097	11.6	0.0	1.2	1	0	0	1	1	1	0	Phosphofructokinase
HTH_45	PF14947.1	gi|146304469|ref|YP_001191785.1|	-	0.00073	19.3	0.0	0.0019	17.9	0.0	1.7	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.14	gi|146304469|ref|YP_001191785.1|	-	0.018	14.7	0.0	0.058	13.0	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_5	PF01022.15	gi|146304469|ref|YP_001191785.1|	-	0.026	14.1	0.6	0.22	11.2	0.0	2.4	3	0	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
HTH_Crp_2	PF13545.1	gi|146304469|ref|YP_001191785.1|	-	0.03	14.0	0.0	0.086	12.6	0.0	1.7	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
HemN_C	PF06969.11	gi|146304469|ref|YP_001191785.1|	-	0.041	13.9	0.0	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	HemN	C-terminal	domain
Rrf2	PF02082.15	gi|146304469|ref|YP_001191785.1|	-	0.055	13.5	0.0	2	8.5	0.0	2.3	2	0	0	2	2	2	0	Transcriptional	regulator
DED	PF01335.16	gi|146304469|ref|YP_001191785.1|	-	0.061	13.4	0.0	0.15	12.2	0.0	1.8	1	0	0	1	1	1	0	Death	effector	domain
MarR_2	PF12802.2	gi|146304469|ref|YP_001191785.1|	-	0.067	12.8	0.0	0.41	10.3	0.0	2.0	2	0	0	2	2	2	0	MarR	family
KorB	PF08535.5	gi|146304469|ref|YP_001191785.1|	-	0.089	12.9	0.1	8.4	6.6	0.0	2.7	3	0	0	3	3	3	0	KorB	domain
Ribosomal_L20	PF00453.13	gi|146304470|ref|YP_001191786.1|	-	0.038	13.8	0.7	0.052	13.4	0.5	1.4	1	0	0	1	1	1	0	Ribosomal	protein	L20
DUF4355	PF14265.1	gi|146304470|ref|YP_001191786.1|	-	0.3	11.0	5.7	0.5	10.3	3.9	1.4	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4355)
FKBP_N	PF01346.13	gi|146304470|ref|YP_001191786.1|	-	0.36	10.8	2.7	0.51	10.3	1.8	1.2	1	0	0	1	1	1	0	Domain	amino	terminal	to	FKBP-type	peptidyl-prolyl	isomerase
DEAD_2	PF06733.10	gi|146304470|ref|YP_001191786.1|	-	0.63	9.4	5.5	0.25	10.7	1.4	1.8	1	1	1	2	2	2	0	DEAD_2
Kisspeptin	PF15152.1	gi|146304471|ref|YP_001191787.1|	-	0.024	15.3	0.0	0.055	14.1	0.0	1.7	1	0	0	1	1	1	0	Kisspeptin
OrfB_Zn_ribbon	PF07282.6	gi|146304471|ref|YP_001191787.1|	-	0.11	12.1	0.2	0.39	10.4	0.2	2.0	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Rubredoxin	PF00301.15	gi|146304471|ref|YP_001191787.1|	-	0.34	10.8	2.0	3.6	7.5	0.0	2.6	2	0	0	2	2	2	0	Rubredoxin
zf-ribbon_3	PF13248.1	gi|146304471|ref|YP_001191787.1|	-	0.4	9.9	4.0	1.3	8.3	2.7	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DZR	PF12773.2	gi|146304472|ref|YP_001191788.1|	-	0.0019	17.9	9.0	0.057	13.2	0.5	3.3	3	1	0	3	3	3	1	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|146304472|ref|YP_001191788.1|	-	0.018	14.2	12.3	0.58	9.4	0.8	4.4	4	1	0	4	4	4	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|146304472|ref|YP_001191788.1|	-	0.031	14.5	2.2	0.84	9.9	0.0	3.1	2	1	1	3	3	3	0	Restriction	alleviation	protein	Lar
FYVE	PF01363.16	gi|146304472|ref|YP_001191788.1|	-	0.04	13.8	6.2	0.87	9.5	0.5	2.5	2	0	0	2	2	2	0	FYVE	zinc	finger
NOB1_Zn_bind	PF08772.6	gi|146304472|ref|YP_001191788.1|	-	0.75	9.6	6.6	3.1	7.7	0.3	2.7	3	0	0	3	3	3	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DUF35_N	PF12172.3	gi|146304472|ref|YP_001191788.1|	-	1.3	8.9	8.7	0.11	12.4	0.7	2.8	3	0	0	3	3	3	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
DUF4182	PF13790.1	gi|146304472|ref|YP_001191788.1|	-	1.9	8.3	6.0	2	8.2	0.5	2.8	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4182)
zinc_ribbon_2	PF13240.1	gi|146304472|ref|YP_001191788.1|	-	2.1	7.9	11.7	0.25	10.8	0.3	3.8	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc-ribbons_6	PF07191.7	gi|146304472|ref|YP_001191788.1|	-	3.9	7.3	6.9	12	5.7	0.2	3.2	3	0	0	3	3	3	0	zinc-ribbons
Cript	PF10235.4	gi|146304472|ref|YP_001191788.1|	-	5.9	7.3	6.4	1.1	9.6	0.1	2.5	2	1	0	2	2	2	0	Microtubule-associated	protein	CRIPT
YhfH	PF14149.1	gi|146304472|ref|YP_001191788.1|	-	6.4	6.6	10.7	14	5.6	0.1	3.4	3	0	0	3	3	3	0	YhfH-like	protein
zf-C4pol	PF14260.1	gi|146304472|ref|YP_001191788.1|	-	7.9	6.5	9.4	48	4.0	0.4	3.2	3	0	0	3	3	3	0	C4-type	zinc-finger	of	DNA	polymerase	delta
Cpn60_TCP1	PF00118.19	gi|146304473|ref|YP_001191789.1|	-	9e-162	539.0	14.2	1e-161	538.8	9.8	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
GLF	PF03275.8	gi|146304473|ref|YP_001191789.1|	-	0.047	13.2	0.1	0.088	12.3	0.1	1.3	1	0	0	1	1	1	0	UDP-galactopyranose	mutase
RPAP3_C	PF13877.1	gi|146304474|ref|YP_001191790.1|	-	0.087	12.8	0.0	0.17	11.8	0.0	1.6	1	1	1	2	2	2	0	Potential	Monad-binding	region	of	RPAP3
Clathrin	PF00637.15	gi|146304475|ref|YP_001191791.1|	-	0.046	13.3	0.2	0.059	12.9	0.1	1.2	1	0	0	1	1	1	0	Region	in	Clathrin	and	VPS
DUF763	PF05559.6	gi|146304475|ref|YP_001191791.1|	-	0.057	12.3	0.4	0.062	12.2	0.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF763)
HTH_9	PF08221.6	gi|146304475|ref|YP_001191791.1|	-	0.11	12.4	0.1	0.15	11.9	0.1	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Prot_inhib_II	PF02428.10	gi|146304476|ref|YP_001191792.1|	-	4.3	7.4	7.0	1	9.4	2.3	2.1	2	1	0	2	2	2	0	Potato	type	II	proteinase	inhibitor	family
tRNA-synt_1d	PF00750.14	gi|146304478|ref|YP_001191794.1|	-	2.4e-44	151.5	0.0	1.9e-21	76.3	0.0	2.1	1	1	1	2	2	2	2	tRNA	synthetases	class	I	(R)
DALR_1	PF05746.10	gi|146304478|ref|YP_001191794.1|	-	2.6e-29	101.5	0.1	8e-29	100.0	0.0	1.9	1	0	0	1	1	1	1	DALR	anticodon	binding	domain
Arg_tRNA_synt_N	PF03485.11	gi|146304478|ref|YP_001191794.1|	-	9.7e-05	22.8	0.0	0.00066	20.1	0.0	2.5	1	1	0	1	1	1	1	Arginyl	tRNA	synthetase	N	terminal	domain
tRNA-synt_1g	PF09334.6	gi|146304478|ref|YP_001191794.1|	-	0.00019	20.2	0.1	0.0064	15.1	0.0	2.6	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1f	PF01921.13	gi|146304478|ref|YP_001191794.1|	-	0.0025	16.5	1.0	0.19	10.3	0.0	2.9	3	0	0	3	3	3	1	tRNA	synthetases	class	I	(K)
tRNA-synt_1	PF00133.17	gi|146304478|ref|YP_001191794.1|	-	0.14	10.1	0.0	0.28	9.1	0.0	1.4	1	0	0	1	1	1	0	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Ribonuc_red_lgC	PF02867.10	gi|146304479|ref|YP_001191795.1|	-	7.4e-180	599.0	0.0	9.2e-180	598.7	0.0	1.1	1	0	0	1	1	1	1	Ribonucleotide	reductase,	barrel	domain
Ribonuc_red_lgN	PF00317.16	gi|146304479|ref|YP_001191795.1|	-	4.1e-27	93.7	0.1	9.2e-27	92.6	0.1	1.6	1	0	0	1	1	1	1	Ribonucleotide	reductase,	all-alpha	domain
ATP-cone	PF03477.11	gi|146304479|ref|YP_001191795.1|	-	3.4e-10	40.2	1.5	8.8e-10	38.8	0.1	2.5	3	0	0	3	3	3	1	ATP	cone	domain
HTH_3	PF01381.17	gi|146304480|ref|YP_001191796.1|	-	0.0012	18.6	0.1	0.0025	17.6	0.0	1.6	2	0	0	2	2	2	1	Helix-turn-helix
GatB_N	PF02934.10	gi|146304482|ref|YP_001191798.1|	-	1.9e-73	246.8	0.0	2.8e-73	246.3	0.0	1.2	1	0	0	1	1	1	1	GatB/GatE	catalytic	domain
GatB_Yqey	PF02637.13	gi|146304482|ref|YP_001191798.1|	-	7e-23	80.9	1.0	2.2e-22	79.3	0.7	1.9	1	0	0	1	1	1	1	GatB	domain
GAD	PF02938.9	gi|146304482|ref|YP_001191798.1|	-	2.4e-17	62.8	0.1	1.6e-15	57.0	0.0	2.8	2	0	0	2	2	2	1	GAD	domain
YqeY	PF09424.5	gi|146304482|ref|YP_001191798.1|	-	6.8e-06	25.9	1.4	6.3e-05	22.8	0.5	2.5	2	1	0	2	2	2	1	Yqey-like	protein
Nitr_red_assoc	PF09655.5	gi|146304482|ref|YP_001191798.1|	-	0.11	12.7	0.0	2.5	8.4	0.0	2.6	2	1	0	2	2	2	0	Conserved	nitrate	reductase-associated	protein	(Nitr_red_assoc)
Asparaginase	PF00710.15	gi|146304483|ref|YP_001191799.1|	-	7.2e-92	307.5	0.0	8.7e-92	307.3	0.0	1.1	1	0	0	1	1	1	1	Asparaginase
RPAP3_C	PF13877.1	gi|146304483|ref|YP_001191799.1|	-	0.062	13.2	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Potential	Monad-binding	region	of	RPAP3
Cas_Cas02710	PF09670.5	gi|146304483|ref|YP_001191799.1|	-	0.17	10.4	0.0	0.33	9.5	0.0	1.4	1	0	0	1	1	1	0	CRISPR-associated	protein	(Cas_Cas02710)
Ribosomal_S30	PF04758.9	gi|146304484|ref|YP_001191800.1|	-	1.5e-13	50.2	6.0	1.9e-13	49.9	4.2	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S30
BRE1	PF08647.6	gi|146304484|ref|YP_001191800.1|	-	0.08	12.9	0.4	0.079	12.9	0.3	1.0	1	0	0	1	1	1	0	BRE1	E3	ubiquitin	ligase
Sas10	PF09368.5	gi|146304484|ref|YP_001191800.1|	-	0.59	10.3	6.2	0.96	9.6	4.4	1.4	1	1	0	1	1	1	0	Sas10	C-terminal	domain
Nop	PF01798.13	gi|146304485|ref|YP_001191801.1|	-	4.6e-54	181.7	0.1	9.4e-54	180.7	0.0	1.5	1	0	0	1	1	1	1	Putative	snoRNA	binding	domain
NOSIC	PF08060.8	gi|146304485|ref|YP_001191801.1|	-	1.9e-23	82.0	0.2	5.2e-23	80.5	0.1	1.8	1	0	0	1	1	1	1	NOSIC	(NUC001)	domain
Fibrillarin	PF01269.12	gi|146304486|ref|YP_001191802.1|	-	2.5e-98	327.5	0.0	2.8e-98	327.4	0.0	1.0	1	0	0	1	1	1	1	Fibrillarin
PCMT	PF01135.14	gi|146304486|ref|YP_001191802.1|	-	0.0024	17.4	0.0	0.0043	16.6	0.0	1.4	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_31	PF13847.1	gi|146304486|ref|YP_001191802.1|	-	0.011	15.3	0.0	0.03	13.8	0.0	1.9	1	1	0	1	1	1	0	Methyltransferase	domain
GCD14	PF08704.5	gi|146304486|ref|YP_001191802.1|	-	0.012	15.0	0.0	0.035	13.5	0.0	1.7	1	1	0	1	1	1	0	tRNA	methyltransferase	complex	GCD14	subunit
BBE	PF08031.7	gi|146304486|ref|YP_001191802.1|	-	0.014	15.2	0.1	0.038	13.9	0.0	1.7	2	0	0	2	2	2	0	Berberine	and	berberine	like
Methyltransf_26	PF13659.1	gi|146304486|ref|YP_001191802.1|	-	0.033	14.2	0.0	0.056	13.4	0.0	1.4	1	1	0	1	1	1	0	Methyltransferase	domain
DUF61	PF01886.11	gi|146304487|ref|YP_001191803.1|	-	3.4e-32	111.0	0.0	4.1e-32	110.8	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF61
DUF2442	PF10387.4	gi|146304487|ref|YP_001191803.1|	-	0.049	13.6	0.0	0.085	12.8	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2442)
HTH_3	PF01381.17	gi|146304488|ref|YP_001191804.1|	-	2.4e-12	46.5	0.1	1.3e-11	44.1	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix
HTH_19	PF12844.2	gi|146304488|ref|YP_001191804.1|	-	5.4e-10	39.1	0.3	2.2e-09	37.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|146304488|ref|YP_001191804.1|	-	2.1e-05	24.6	0.0	8.1e-05	22.7	0.0	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
MerR_1	PF13411.1	gi|146304488|ref|YP_001191804.1|	-	0.0035	17.0	0.0	0.012	15.3	0.0	2.0	1	0	0	1	1	1	1	MerR	HTH	family	regulatory	protein
MerR	PF00376.18	gi|146304488|ref|YP_001191804.1|	-	0.0063	16.0	0.0	0.016	14.7	0.0	1.7	1	0	0	1	1	1	1	MerR	family	regulatory	protein
HTH_26	PF13443.1	gi|146304488|ref|YP_001191804.1|	-	0.012	15.8	0.0	0.032	14.4	0.0	1.8	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
HTH_17	PF12728.2	gi|146304488|ref|YP_001191804.1|	-	0.049	13.8	0.2	0.25	11.6	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
ApbA_C	PF08546.6	gi|146304488|ref|YP_001191804.1|	-	0.06	13.3	0.2	4.2	7.3	0.0	3.0	2	1	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA	C	terminal
NUMOD1	PF07453.8	gi|146304488|ref|YP_001191804.1|	-	0.068	13.0	0.2	0.21	11.4	0.0	2.0	2	0	0	2	2	2	0	NUMOD1	domain
HTH_23	PF13384.1	gi|146304488|ref|YP_001191804.1|	-	0.12	12.0	0.0	0.34	10.6	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|146304488|ref|YP_001191804.1|	-	0.13	12.1	0.1	1.8	8.3	0.0	2.6	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
TRM	PF02005.11	gi|146304489|ref|YP_001191805.1|	-	6.4e-85	285.3	0.0	7e-85	285.1	0.0	1.0	1	0	0	1	1	1	1	N2,N2-dimethylguanosine	tRNA	methyltransferase
Met_10	PF02475.11	gi|146304489|ref|YP_001191805.1|	-	0.00021	20.9	0.0	0.00039	20.0	0.0	1.3	1	1	0	1	1	1	1	Met-10+	like-protein
Methyltransf_31	PF13847.1	gi|146304489|ref|YP_001191805.1|	-	0.027	14.0	0.0	0.052	13.1	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
HypA	PF01155.14	gi|146304489|ref|YP_001191805.1|	-	0.067	12.8	0.2	0.12	12.0	0.1	1.3	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn_Tnp_IS91	PF14319.1	gi|146304489|ref|YP_001191805.1|	-	0.14	11.7	0.4	0.26	10.8	0.3	1.4	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
UPF0547	PF10571.4	gi|146304489|ref|YP_001191805.1|	-	0.29	10.8	2.8	7.1	6.4	0.1	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.1	gi|146304489|ref|YP_001191805.1|	-	0.3	10.3	3.5	0.56	9.4	2.4	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146304489|ref|YP_001191805.1|	-	0.45	10.5	5.5	1.2	9.1	3.8	1.7	1	0	0	1	1	1	0	Zinc	ribbon	domain
zf-C2H2_6	PF13912.1	gi|146304489|ref|YP_001191805.1|	-	1.2	9.0	3.1	1.1	9.2	0.1	2.3	2	0	0	2	2	2	0	C2H2-type	zinc	finger
RNA_pol_Rpc34	PF05158.7	gi|146304490|ref|YP_001191806.1|	-	1.8e-12	47.1	6.8	5.1e-07	29.1	1.5	2.0	1	1	1	2	2	2	2	RNA	polymerase	Rpc34	subunit
HTH_24	PF13412.1	gi|146304490|ref|YP_001191806.1|	-	9.9e-07	28.0	0.7	2.3e-06	26.8	0.5	1.8	1	1	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
B-block_TFIIIC	PF04182.7	gi|146304490|ref|YP_001191806.1|	-	2.1e-06	27.4	0.3	3e-06	26.9	0.2	1.3	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
MarR	PF01047.17	gi|146304490|ref|YP_001191806.1|	-	2.8e-06	26.9	1.4	8.4e-06	25.4	0.2	2.1	1	1	1	2	2	2	1	MarR	family
HTH_11	PF08279.7	gi|146304490|ref|YP_001191806.1|	-	0.00018	21.0	0.5	0.00027	20.5	0.3	1.4	1	0	0	1	1	1	1	HTH	domain
TFIIE_alpha	PF02002.12	gi|146304490|ref|YP_001191806.1|	-	0.00027	20.3	0.6	0.00034	20.0	0.4	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_3	PF01381.17	gi|146304490|ref|YP_001191806.1|	-	0.0035	17.1	1.0	0.0072	16.1	0.4	1.8	1	1	0	1	1	1	1	Helix-turn-helix
RPA_C	PF08784.6	gi|146304490|ref|YP_001191806.1|	-	0.0082	16.5	0.1	0.014	15.7	0.1	1.4	1	1	0	1	1	1	1	Replication	protein	A	C	terminal
HTH_Crp_2	PF13545.1	gi|146304490|ref|YP_001191806.1|	-	0.015	15.0	0.1	0.026	14.3	0.1	1.4	1	1	0	1	1	1	0	Crp-like	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304490|ref|YP_001191806.1|	-	0.023	14.3	0.0	0.04	13.5	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_36	PF13730.1	gi|146304490|ref|YP_001191806.1|	-	0.024	14.7	0.1	0.05	13.7	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146304490|ref|YP_001191806.1|	-	0.025	14.2	0.6	0.055	13.1	0.2	1.7	1	1	1	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
CENP-B_N	PF04218.8	gi|146304490|ref|YP_001191806.1|	-	0.037	13.4	0.2	0.11	11.9	0.1	1.9	2	1	0	2	2	2	0	CENP-B	N-terminal	DNA-binding	domain
HTH_23	PF13384.1	gi|146304490|ref|YP_001191806.1|	-	0.045	13.4	0.0	0.1	12.2	0.0	1.7	1	1	1	2	2	2	0	Homeodomain-like	domain
eIF-4B	PF06273.6	gi|146304490|ref|YP_001191806.1|	-	0.057	12.1	0.6	0.067	11.9	0.4	1.0	1	0	0	1	1	1	0	Plant	specific	eukaryotic	initiation	factor	4B
HTH_45	PF14947.1	gi|146304490|ref|YP_001191806.1|	-	0.077	12.8	0.8	0.11	12.2	0.5	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_38	PF13936.1	gi|146304490|ref|YP_001191806.1|	-	0.079	12.5	0.4	0.17	11.4	0.1	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.1	gi|146304490|ref|YP_001191806.1|	-	0.084	12.4	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Rio2_N	PF09202.6	gi|146304490|ref|YP_001191806.1|	-	0.092	12.8	0.1	0.15	12.1	0.1	1.5	1	0	0	1	1	1	0	Rio2,	N-terminal
HTH_28	PF13518.1	gi|146304490|ref|YP_001191806.1|	-	0.12	12.3	0.0	0.34	10.9	0.0	1.7	1	1	0	1	1	1	0	Helix-turn-helix	domain
DUF771	PF05595.6	gi|146304490|ref|YP_001191806.1|	-	0.15	11.9	1.1	0.21	11.5	0.7	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF771)
Phage_rep_O	PF04492.8	gi|146304490|ref|YP_001191806.1|	-	0.3	11.3	1.9	0.57	10.4	0.3	1.8	1	1	1	2	2	2	0	Bacteriophage	replication	protein	O
TBP	PF00352.16	gi|146304491|ref|YP_001191807.1|	-	3.7e-62	205.6	0.1	1.1e-34	117.6	0.0	2.0	2	0	0	2	2	2	2	Transcription	factor	TFIID	(or	TATA-binding	protein,	TBP)
DUF3378	PF11858.3	gi|146304491|ref|YP_001191807.1|	-	3.7e-05	23.6	0.0	0.29	11.2	0.0	2.3	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF3378)
Ribosomal_S30AE	PF02482.14	gi|146304491|ref|YP_001191807.1|	-	0.036	14.5	0.4	0.55	10.7	0.3	2.4	1	1	1	2	2	2	0	Sigma	54	modulation	protein	/	S30EA	ribosomal	protein
DUF4007	PF13182.1	gi|146304491|ref|YP_001191807.1|	-	0.084	11.6	0.0	0.94	8.2	0.0	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4007)
Spore_YhaL	PF14147.1	gi|146304491|ref|YP_001191807.1|	-	1.5	8.3	4.3	3.4	7.2	0.0	3.0	4	0	0	4	4	4	0	Sporulation	protein	YhaL
DUF373	PF04123.8	gi|146304493|ref|YP_001191809.1|	-	3.4e-105	351.8	13.4	3.9e-105	351.6	9.3	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF373)
SRP54	PF00448.17	gi|146304493|ref|YP_001191809.1|	-	0.028	13.8	0.1	0.044	13.2	0.0	1.2	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Chromate_transp	PF02417.10	gi|146304493|ref|YP_001191809.1|	-	0.043	13.4	14.2	0.42	10.2	1.8	2.2	1	1	1	2	2	2	0	Chromate	transporter
Reo_sigmaC	PF04582.7	gi|146304494|ref|YP_001191810.1|	-	1.1e-06	28.0	6.7	0.0025	17.0	1.2	2.2	1	1	2	3	3	3	3	Reovirus	sigma	C	capsid	protein
Baculo_PEP_C	PF04513.7	gi|146304494|ref|YP_001191810.1|	-	0.00014	21.7	7.8	0.077	12.8	0.1	3.1	1	1	3	4	4	4	2	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF948	PF06103.6	gi|146304494|ref|YP_001191810.1|	-	0.00018	21.3	2.1	0.00018	21.3	1.5	4.1	3	2	3	6	6	5	1	Bacterial	protein	of	unknown	function	(DUF948)
Spc7	PF08317.6	gi|146304494|ref|YP_001191810.1|	-	0.00038	19.2	51.1	0.0014	17.4	13.7	3.1	1	1	2	3	3	3	3	Spc7	kinetochore	protein
IncA	PF04156.9	gi|146304494|ref|YP_001191810.1|	-	0.00051	19.6	51.1	0.00082	19.0	11.2	3.3	1	1	1	2	2	1	1	IncA	protein
CHASE3	PF05227.8	gi|146304494|ref|YP_001191810.1|	-	0.0015	18.1	5.0	0.0015	18.1	3.4	3.7	1	1	2	3	3	3	1	CHASE3	domain
ATG16	PF08614.6	gi|146304494|ref|YP_001191810.1|	-	0.0052	16.6	10.6	0.0052	16.6	7.4	4.3	1	1	4	5	5	5	3	Autophagy	protein	16	(ATG16)
TPR_MLP1_2	PF07926.7	gi|146304494|ref|YP_001191810.1|	-	0.0054	16.4	44.2	0.37	10.5	16.3	3.1	1	1	1	2	2	2	2	TPR/MLP1/MLP2-like	protein
Cep57_CLD_2	PF14197.1	gi|146304494|ref|YP_001191810.1|	-	0.0073	16.2	8.8	0.0073	16.2	6.1	5.2	2	2	1	4	4	3	1	Centrosome	localisation	domain	of	PPC89
GAS	PF13851.1	gi|146304494|ref|YP_001191810.1|	-	0.0077	15.4	53.6	0.061	12.5	16.4	2.2	1	1	1	2	2	2	2	Growth-arrest	specific	micro-tubule	binding
MCPsignal	PF00015.16	gi|146304494|ref|YP_001191810.1|	-	0.0096	15.4	17.4	0.58	9.6	2.3	2.5	1	1	1	2	2	2	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Uso1_p115_C	PF04871.8	gi|146304494|ref|YP_001191810.1|	-	0.01	15.7	8.9	0.01	15.7	6.2	3.3	2	1	1	3	3	3	0	Uso1	/	p115	like	vesicle	tethering	protein,	C	terminal	region
Kinetocho_Slk19	PF12709.2	gi|146304494|ref|YP_001191810.1|	-	0.039	14.0	3.5	0.039	14.0	2.4	5.2	3	2	2	5	5	4	0	Central	kinetochore-associated
TyeA	PF09059.5	gi|146304494|ref|YP_001191810.1|	-	0.039	13.8	3.0	0.14	12.1	0.1	3.1	2	2	0	3	3	2	0	TyeA
DUF869	PF05911.6	gi|146304494|ref|YP_001191810.1|	-	0.067	11.4	37.9	0.15	10.2	26.3	1.5	1	1	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF869)
PilJ	PF13675.1	gi|146304494|ref|YP_001191810.1|	-	0.078	13.3	9.6	0.49	10.7	0.8	3.2	1	1	2	3	3	3	0	Type	IV	pili	methyl-accepting	chemotaxis	transducer	N-term
DUF972	PF06156.8	gi|146304494|ref|YP_001191810.1|	-	0.094	13.0	40.5	0.34	11.2	2.6	5.0	1	1	5	6	6	6	0	Protein	of	unknown	function	(DUF972)
Sec34	PF04136.10	gi|146304494|ref|YP_001191810.1|	-	0.17	11.5	17.7	0.032	13.9	1.9	2.6	2	1	0	2	2	2	0	Sec34-like	family
AAA_13	PF13166.1	gi|146304494|ref|YP_001191810.1|	-	0.3	9.4	43.2	2.4	6.5	30.1	2.0	1	1	0	1	1	1	0	AAA	domain
FUSC	PF04632.7	gi|146304494|ref|YP_001191810.1|	-	0.32	9.3	2.8	0.43	8.9	0.8	1.7	1	1	1	2	2	2	0	Fusaric	acid	resistance	protein	family
DivIC	PF04977.10	gi|146304494|ref|YP_001191810.1|	-	0.38	10.2	42.2	0.039	13.4	2.4	5.7	2	2	4	6	6	6	0	Septum	formation	initiator
DUF4201	PF13870.1	gi|146304494|ref|YP_001191810.1|	-	0.52	9.7	51.3	0.46	9.9	5.3	3.3	1	1	2	3	3	3	0	Domain	of	unknown	function	(DUF4201)
DUF1664	PF07889.7	gi|146304494|ref|YP_001191810.1|	-	0.55	10.0	31.9	0.13	12.0	4.4	4.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
Muted	PF14942.1	gi|146304494|ref|YP_001191810.1|	-	0.58	10.0	37.1	0.02	14.7	6.2	3.4	1	1	2	3	3	3	0	Organelle	biogenesis,	Muted-like	protein
NPV_P10	PF05531.7	gi|146304494|ref|YP_001191810.1|	-	0.59	10.4	13.0	3	8.1	2.4	4.5	2	2	2	4	4	4	0	Nucleopolyhedrovirus	P10	protein
DUF3450	PF11932.3	gi|146304494|ref|YP_001191810.1|	-	0.83	8.8	23.5	0.21	10.7	4.4	2.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3450)
Seryl_tRNA_N	PF02403.17	gi|146304494|ref|YP_001191810.1|	-	0.85	9.6	52.7	1.4	8.9	2.7	4.7	1	1	4	5	5	5	0	Seryl-tRNA	synthetase	N-terminal	domain
APG6	PF04111.7	gi|146304494|ref|YP_001191810.1|	-	0.89	8.5	45.9	1.2	8.1	9.8	3.0	1	1	1	2	2	2	0	Autophagy	protein	Apg6
Hemerythrin	PF01814.18	gi|146304494|ref|YP_001191810.1|	-	1	9.5	8.4	2.2	8.4	0.4	3.4	1	1	2	3	3	3	0	Hemerythrin	HHE	cation	binding	domain
Atg14	PF10186.4	gi|146304494|ref|YP_001191810.1|	-	1	8.2	50.0	0.025	13.5	10.5	3.4	1	1	2	3	3	3	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
YPEB	PF14620.1	gi|146304494|ref|YP_001191810.1|	-	1.1	8.1	21.0	0.031	13.3	3.6	2.6	1	1	2	3	3	3	0	YpeB	sporulation
Mod_r	PF07200.8	gi|146304494|ref|YP_001191810.1|	-	1.1	9.1	41.5	6.1	6.7	1.7	4.2	1	1	2	3	3	3	0	Modifier	of	rudimentary	(Mod(r))	protein
WEMBL	PF05701.6	gi|146304494|ref|YP_001191810.1|	-	1.2	7.5	47.4	1.4	7.3	14.8	2.4	1	1	0	1	1	1	0	Weak	chloroplast	movement	under	blue	light
DUF812	PF05667.6	gi|146304494|ref|YP_001191810.1|	-	1.4	7.3	44.0	2	6.8	6.0	3.0	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF812)
DUF3584	PF12128.3	gi|146304494|ref|YP_001191810.1|	-	1.6	5.9	36.7	5.1	4.2	25.6	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3584)
SSFA2_C	PF14723.1	gi|146304494|ref|YP_001191810.1|	-	1.9	8.2	10.8	0.33	10.6	1.8	2.5	2	0	0	2	2	2	0	Sperm-specific	antigen	2	C-terminus
Lectin_N	PF03954.9	gi|146304494|ref|YP_001191810.1|	-	2.9	7.3	10.4	1.8	7.9	2.3	3.2	1	1	1	2	2	2	0	Hepatic	lectin,	N-terminal	domain
TBPIP	PF07106.8	gi|146304494|ref|YP_001191810.1|	-	3	7.3	49.1	0.04	13.4	11.8	3.5	1	1	2	3	3	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
Syntaxin	PF00804.20	gi|146304494|ref|YP_001191810.1|	-	3.3	7.9	42.4	1.1	9.4	9.0	4.5	1	1	2	3	3	2	0	Syntaxin
CENP-F_leu_zip	PF10473.4	gi|146304494|ref|YP_001191810.1|	-	3.4	7.5	57.4	0.044	13.6	16.0	4.2	1	1	3	4	4	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Filo_VP35	PF02097.10	gi|146304494|ref|YP_001191810.1|	-	4.4	6.4	10.6	1.1	8.4	0.8	2.6	1	1	1	2	2	2	0	Filoviridae	VP35
COG2	PF06148.6	gi|146304494|ref|YP_001191810.1|	-	6.8	6.5	34.2	0.25	11.2	4.0	4.7	1	1	3	4	4	3	0	COG	(conserved	oligomeric	Golgi)	complex	component,	COG2
Lebercilin	PF15619.1	gi|146304494|ref|YP_001191810.1|	-	7	6.0	53.7	0.027	13.9	10.8	3.5	1	1	1	2	2	1	0	Ciliary	protein	causing	Leber	congenital	amaurosis	disease
HAUS6_N	PF14661.1	gi|146304494|ref|YP_001191810.1|	-	7.2	5.8	31.2	0.27	10.5	7.7	3.1	1	1	2	3	3	3	0	HAUS	augmin-like	complex	subunit	6	N-terminus
LOH1CR12	PF10158.4	gi|146304494|ref|YP_001191810.1|	-	8.3	6.2	22.4	1.2	8.9	2.7	3.7	1	1	2	4	4	4	0	Tumour	suppressor	protein
Mnd1	PF03962.10	gi|146304494|ref|YP_001191810.1|	-	8.6	5.9	44.1	15	5.1	9.1	3.8	1	1	1	2	2	2	0	Mnd1	family
DUF1843	PF08898.5	gi|146304494|ref|YP_001191810.1|	-	9.1	6.4	7.8	12	5.9	0.6	3.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1843)
Gar1	PF04410.9	gi|146304495|ref|YP_001191811.1|	-	0.014	14.8	0.0	0.021	14.2	0.0	1.3	1	0	0	1	1	1	0	Gar1/Naf1	RNA	binding	region
TFIIB	PF00382.14	gi|146304496|ref|YP_001191812.1|	-	6e-20	70.8	0.3	4.4e-14	52.0	0.2	2.3	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|146304496|ref|YP_001191812.1|	-	1.9e-15	55.9	1.4	2.9e-15	55.2	1.0	1.3	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|146304496|ref|YP_001191812.1|	-	9.7e-05	21.5	0.0	0.00023	20.3	0.0	1.7	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_11	PF08279.7	gi|146304496|ref|YP_001191812.1|	-	0.0022	17.6	0.4	0.012	15.2	0.1	2.4	3	0	0	3	3	3	1	HTH	domain
Sigma70_r4_2	PF08281.7	gi|146304496|ref|YP_001191812.1|	-	0.003	16.9	0.2	0.0097	15.3	0.0	1.9	1	1	1	2	2	2	1	Sigma-70,	region	4
Cyclin_C	PF02984.14	gi|146304496|ref|YP_001191812.1|	-	0.01	15.7	0.1	0.021	14.7	0.0	1.6	2	0	0	2	2	2	0	Cyclin,	C-terminal	domain
HTH_24	PF13412.1	gi|146304496|ref|YP_001191812.1|	-	0.017	14.5	0.8	0.21	10.9	0.0	2.9	4	0	0	4	4	4	0	Winged	helix-turn-helix	DNA-binding
HTH_Mga	PF08280.6	gi|146304496|ref|YP_001191812.1|	-	0.035	13.8	0.1	0.16	11.7	0.0	2.2	2	1	0	2	2	2	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
HTH_3	PF01381.17	gi|146304496|ref|YP_001191812.1|	-	0.048	13.5	0.0	0.14	12.0	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
HTH_AsnC-type	PF13404.1	gi|146304496|ref|YP_001191812.1|	-	0.1	12.1	0.0	0.33	10.5	0.0	1.9	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
GerE	PF00196.14	gi|146304496|ref|YP_001191812.1|	-	0.1	11.8	0.5	0.28	10.5	0.3	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_23	PF13384.1	gi|146304496|ref|YP_001191812.1|	-	0.1	12.2	0.1	0.28	10.8	0.0	1.7	1	0	0	1	1	1	0	Homeodomain-like	domain
RRN7	PF11781.3	gi|146304496|ref|YP_001191812.1|	-	0.17	11.4	0.2	0.26	10.8	0.1	1.3	1	0	0	1	1	1	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Metallophos	PF00149.23	gi|146304497|ref|YP_001191813.1|	-	1.2e-06	28.0	1.1	5.7e-06	25.8	0.8	1.9	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase
Metallophos_2	PF12850.2	gi|146304497|ref|YP_001191813.1|	-	4.7e-05	23.2	0.2	9e-05	22.3	0.1	1.4	1	1	0	1	1	1	1	Calcineurin-like	phosphoesterase	superfamily	domain
ERp29_N	PF07912.8	gi|146304497|ref|YP_001191813.1|	-	0.094	12.6	0.0	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	ERp29,	N-terminal	domain
TP_methylase	PF00590.15	gi|146304498|ref|YP_001191814.1|	-	7.3e-24	84.6	0.0	9.1e-24	84.3	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
NtA	PF03146.10	gi|146304498|ref|YP_001191814.1|	-	0.095	12.3	0.1	0.29	10.7	0.0	1.8	2	1	0	2	2	2	0	Agrin	NtA	domain
DUF357	PF04010.8	gi|146304499|ref|YP_001191815.1|	-	6e-20	70.7	1.6	7.5e-20	70.4	0.4	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF357)
CTP_transf_2	PF01467.21	gi|146304499|ref|YP_001191815.1|	-	2.1e-12	47.3	0.0	6.8e-12	45.7	0.0	1.8	1	1	0	1	1	1	1	Cytidylyltransferase
Toprim_3	PF13362.1	gi|146304499|ref|YP_001191815.1|	-	0.0065	16.6	0.0	0.045	14.0	0.0	2.1	1	1	1	2	2	2	1	Toprim	domain
RPN7	PF10602.4	gi|146304499|ref|YP_001191815.1|	-	0.0077	15.6	0.1	0.016	14.5	0.0	1.5	2	0	0	2	2	2	1	26S	proteasome	subunit	RPN7
Oxidored_nitro	PF00148.14	gi|146304499|ref|YP_001191815.1|	-	0.056	12.0	0.0	0.058	12.0	0.0	1.2	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
CTP-dep_RFKase	PF01982.11	gi|146304500|ref|YP_001191816.1|	-	5.7e-41	138.9	0.0	9.4e-41	138.2	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF120
MarR_2	PF12802.2	gi|146304500|ref|YP_001191816.1|	-	1.5e-08	34.1	0.1	9.1e-08	31.6	0.1	2.0	2	0	0	2	2	2	1	MarR	family
HTH_Crp_2	PF13545.1	gi|146304500|ref|YP_001191816.1|	-	1.2e-06	28.2	0.3	2.5e-06	27.2	0.2	1.5	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
MarR	PF01047.17	gi|146304500|ref|YP_001191816.1|	-	1.5e-06	27.7	0.6	2.8e-06	26.9	0.4	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.1	gi|146304500|ref|YP_001191816.1|	-	1e-05	24.7	0.6	2e-05	23.8	0.3	1.7	2	0	0	2	2	1	1	Winged	helix-turn-helix	DNA-binding
DUF505	PF04458.7	gi|146304500|ref|YP_001191816.1|	-	1.5e-05	23.3	0.3	2.1e-05	22.8	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
HTH_11	PF08279.7	gi|146304500|ref|YP_001191816.1|	-	7e-05	22.3	0.8	0.00014	21.4	0.5	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_36	PF13730.1	gi|146304500|ref|YP_001191816.1|	-	0.00013	21.9	0.1	0.00028	20.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_20	PF12840.2	gi|146304500|ref|YP_001191816.1|	-	0.0002	21.1	0.1	0.00041	20.1	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_12	PF08461.5	gi|146304500|ref|YP_001191816.1|	-	0.0002	21.0	0.9	0.00047	19.8	0.6	1.6	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.1	gi|146304500|ref|YP_001191816.1|	-	0.00029	21.1	0.1	0.00058	20.1	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_38	PF13936.1	gi|146304500|ref|YP_001191816.1|	-	0.00031	20.2	0.3	0.0013	18.2	0.1	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146304500|ref|YP_001191816.1|	-	0.00037	20.1	2.2	0.0012	18.5	0.6	2.1	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_1	PF00126.22	gi|146304500|ref|YP_001191816.1|	-	0.00079	19.1	0.1	0.0017	18.0	0.1	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	helix-turn-helix	protein,	lysR	family
HTH_5	PF01022.15	gi|146304500|ref|YP_001191816.1|	-	0.00089	18.8	0.1	0.0022	17.6	0.1	1.7	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|146304500|ref|YP_001191816.1|	-	0.0011	18.7	0.5	0.0018	18.0	0.3	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_34	PF13601.1	gi|146304500|ref|YP_001191816.1|	-	0.0014	18.6	0.3	0.0045	16.9	0.4	1.7	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.14	gi|146304500|ref|YP_001191816.1|	-	0.0015	18.3	0.8	0.0047	16.8	0.6	1.8	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_13	PF11972.3	gi|146304500|ref|YP_001191816.1|	-	0.003	17.3	0.1	0.0068	16.2	0.1	1.6	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HxlR	PF01638.12	gi|146304500|ref|YP_001191816.1|	-	0.0079	15.7	0.9	0.015	14.8	0.6	1.5	1	0	0	1	1	1	1	HxlR-like	helix-turn-helix
Antitoxin-MazE	PF04014.13	gi|146304500|ref|YP_001191816.1|	-	0.0085	15.8	0.2	0.093	12.4	0.0	2.6	3	0	0	3	3	3	1	Antidote-toxin	recognition	MazE
DUF2250	PF10007.4	gi|146304500|ref|YP_001191816.1|	-	0.01	15.6	0.7	0.019	14.8	0.5	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_DeoR	PF08220.7	gi|146304500|ref|YP_001191816.1|	-	0.02	14.4	0.9	0.039	13.4	0.6	1.5	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Arg_repressor	PF01316.16	gi|146304500|ref|YP_001191816.1|	-	0.024	14.1	1.0	0.043	13.3	0.7	1.4	1	0	0	1	1	1	0	Arginine	repressor,	DNA	binding	domain
FUR	PF01475.14	gi|146304500|ref|YP_001191816.1|	-	0.025	14.4	0.2	0.039	13.8	0.1	1.3	1	0	0	1	1	1	0	Ferric	uptake	regulator	family
Rrf2	PF02082.15	gi|146304500|ref|YP_001191816.1|	-	0.033	14.2	0.3	0.065	13.3	0.2	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
HTH_37	PF13744.1	gi|146304500|ref|YP_001191816.1|	-	0.043	13.6	0.7	0.075	12.8	0.5	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ribosomal_S25	PF03297.10	gi|146304500|ref|YP_001191816.1|	-	0.099	12.6	0.9	0.18	11.8	0.6	1.4	1	0	0	1	1	1	0	S25	ribosomal	protein
HTH_IclR	PF09339.5	gi|146304500|ref|YP_001191816.1|	-	0.12	11.9	0.1	0.21	11.2	0.1	1.3	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Phage_rep_O	PF04492.8	gi|146304500|ref|YP_001191816.1|	-	0.14	12.3	0.4	0.29	11.3	0.3	1.5	1	0	0	1	1	1	0	Bacteriophage	replication	protein	O
Wyosine_form	PF08608.7	gi|146304501|ref|YP_001191817.1|	-	5.8e-24	83.9	0.2	2.5e-23	81.9	0.0	2.1	2	0	0	2	2	2	1	Wyosine	base	formation
Radical_SAM	PF04055.16	gi|146304501|ref|YP_001191817.1|	-	7.3e-19	68.5	0.1	3e-18	66.5	0.1	1.9	1	1	0	1	1	1	1	Radical	SAM	superfamily
Amidase	PF01425.16	gi|146304502|ref|YP_001191818.1|	-	3.1e-136	454.7	0.0	3.5e-136	454.5	0.0	1.0	1	0	0	1	1	1	1	Amidase
E2	PF08199.6	gi|146304502|ref|YP_001191818.1|	-	0.097	12.2	0.1	0.2	11.2	0.1	1.5	1	0	0	1	1	1	0	Bacteriophage	E2-like	protein
Glu-tRNAGln	PF02686.10	gi|146304503|ref|YP_001191819.1|	-	3.5e-23	81.1	0.0	4.6e-23	80.7	0.0	1.2	1	0	0	1	1	1	1	Glu-tRNAGln	amidotransferase	C	subunit
PP1_inhibitor	PF05361.7	gi|146304503|ref|YP_001191819.1|	-	0.058	13.0	0.2	0.067	12.8	0.1	1.1	1	0	0	1	1	1	0	PKC-activated	protein	phosphatase-1	inhibitor
SporV_AA	PF12164.3	gi|146304503|ref|YP_001191819.1|	-	0.14	12.1	0.1	0.17	11.8	0.1	1.2	1	0	0	1	1	1	0	Stage	V	sporulation	protein	AA
CutA1	PF03091.10	gi|146304504|ref|YP_001191820.1|	-	1.7e-38	130.3	0.0	2e-38	130.1	0.0	1.0	1	0	0	1	1	1	1	CutA1	divalent	ion	tolerance	protein
H-kinase_dim	PF02895.9	gi|146304504|ref|YP_001191820.1|	-	0.081	13.2	0.1	0.15	12.3	0.1	1.4	1	0	0	1	1	1	0	Signal	transducing	histidine	kinase,	homodimeric	domain
ResIII	PF04851.10	gi|146304506|ref|YP_001191822.1|	-	6.1e-20	71.8	0.0	1.9e-19	70.2	0.0	1.8	1	1	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|146304506|ref|YP_001191822.1|	-	2.9e-18	65.5	0.0	1.7e-17	62.9	0.0	2.3	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
SNF2_N	PF00176.18	gi|146304506|ref|YP_001191822.1|	-	2.5e-11	42.9	0.0	3.9e-11	42.2	0.0	1.4	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
DEAD	PF00270.24	gi|146304506|ref|YP_001191822.1|	-	5e-10	39.1	0.0	1.2e-09	37.8	0.0	1.7	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|146304506|ref|YP_001191822.1|	-	0.0056	16.8	0.1	0.03	14.4	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
CAMSAP_CKK	PF08683.6	gi|146304506|ref|YP_001191822.1|	-	0.079	12.6	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Microtubule-binding	calmodulin-regulated	spectrin-associated
Helicase_C_2	PF13307.1	gi|146304506|ref|YP_001191822.1|	-	0.084	12.8	0.1	0.27	11.1	0.1	1.8	1	1	0	1	1	1	0	Helicase	C-terminal	domain
PH_BEACH	PF14844.1	gi|146304507|ref|YP_001191823.1|	-	0.031	14.0	0.0	1.5	8.6	0.0	2.2	1	1	0	1	1	1	0	PH	domain	associated	with	Beige/BEACH
BRCA-2_OB3	PF09104.5	gi|146304507|ref|YP_001191823.1|	-	0.14	11.9	0.0	4.1	7.2	0.0	2.1	2	0	0	2	2	2	0	BRCA2,	oligonucleotide/oligosaccharide-binding,	domain	3
Cyclin_N	PF00134.18	gi|146304508|ref|YP_001191824.1|	-	0.041	13.4	0.1	0.045	13.3	0.1	1.2	1	0	0	1	1	1	0	Cyclin,	N-terminal	domain
PhdYeFM_antitox	PF02604.14	gi|146304508|ref|YP_001191824.1|	-	0.13	11.9	0.1	0.17	11.4	0.0	1.2	1	0	0	1	1	1	0	Antitoxin	Phd_YefM,	type	II	toxin-antitoxin	system
YjzC	PF14168.1	gi|146304509|ref|YP_001191825.1|	-	0.13	12.1	0.0	0.2	11.6	0.0	1.3	1	0	0	1	1	1	0	YjzC-like	protein
Alba	PF01918.16	gi|146304510|ref|YP_001191826.1|	-	4.6e-19	67.7	0.2	6.8e-19	67.2	0.1	1.3	1	0	0	1	1	1	1	Alba
Topoisom_bac	PF01131.15	gi|146304511|ref|YP_001191827.1|	-	1.9e-84	283.8	0.0	3e-84	283.2	0.0	1.3	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|146304511|ref|YP_001191827.1|	-	1.1e-19	70.2	0.0	3.4e-19	68.6	0.0	1.9	1	0	0	1	1	1	1	Toprim	domain
ResIII	PF04851.10	gi|146304511|ref|YP_001191827.1|	-	2.4e-07	30.7	0.0	5e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|146304511|ref|YP_001191827.1|	-	8e-07	28.6	0.3	2.5e-05	23.8	0.2	2.9	2	1	0	2	2	2	1	DEAD/DEAH	box	helicase
AAA_22	PF13401.1	gi|146304511|ref|YP_001191827.1|	-	0.0011	19.0	0.0	0.0035	17.4	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Toprim_4	PF13662.1	gi|146304511|ref|YP_001191827.1|	-	0.0023	17.8	0.0	0.012	15.5	0.0	2.1	2	0	0	2	2	2	1	Toprim	domain
zinc_ribbon_2	PF13240.1	gi|146304511|ref|YP_001191827.1|	-	0.0023	17.3	1.3	0.0023	17.3	0.9	2.4	2	0	0	2	2	2	1	zinc-ribbon	domain
DUF1272	PF06906.6	gi|146304511|ref|YP_001191827.1|	-	0.0054	16.5	1.5	2.4	8.0	0.2	2.4	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF1272)
DZR	PF12773.2	gi|146304511|ref|YP_001191827.1|	-	0.006	16.3	4.6	0.009	15.8	0.2	2.3	2	0	0	2	2	2	1	Double	zinc	ribbon
zf-C3HC4_3	PF13920.1	gi|146304511|ref|YP_001191827.1|	-	0.04	13.5	4.0	0.07	12.8	1.0	2.2	2	0	0	2	2	2	0	Zinc	finger,	C3HC4	type	(RING	finger)
zf-ribbon_3	PF13248.1	gi|146304511|ref|YP_001191827.1|	-	0.061	12.5	7.0	0.058	12.6	1.2	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
NOB1_Zn_bind	PF08772.6	gi|146304511|ref|YP_001191827.1|	-	0.095	12.5	0.1	0.29	10.9	0.1	1.9	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
zinc-ribbons_6	PF07191.7	gi|146304511|ref|YP_001191827.1|	-	1.1	9.0	5.0	5.4	6.8	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbons
Alba	PF01918.16	gi|146304512|ref|YP_001191828.1|	-	3.7e-11	42.4	0.5	1.5e-10	40.5	0.1	2.0	2	0	0	2	2	2	1	Alba
DEAD	PF00270.24	gi|146304513|ref|YP_001191829.1|	-	1.1e-30	106.3	0.0	7.6e-30	103.6	0.0	2.2	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DEAD_assoc	PF08494.6	gi|146304513|ref|YP_001191829.1|	-	1.1e-22	80.7	0.3	1.2e-21	77.3	0.1	2.6	2	1	0	2	2	2	1	DEAD/H	associated
Helicase_C	PF00271.26	gi|146304513|ref|YP_001191829.1|	-	2.3e-12	46.6	0.0	2.1e-11	43.5	0.0	2.4	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|146304513|ref|YP_001191829.1|	-	3.1e-07	30.4	0.0	1.8e-05	24.6	0.0	2.7	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
SNF2_N	PF00176.18	gi|146304513|ref|YP_001191829.1|	-	0.0005	18.9	0.0	0.0012	17.7	0.0	1.5	1	0	0	1	1	1	1	SNF2	family	N-terminal	domain
AAA_11	PF13086.1	gi|146304513|ref|YP_001191829.1|	-	0.16	11.5	0.0	0.57	9.7	0.0	1.9	1	1	1	2	2	2	0	AAA	domain
AAA_25	PF13481.1	gi|146304513|ref|YP_001191829.1|	-	0.19	11.1	0.0	0.6	9.4	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
RtcB	PF01139.12	gi|146304515|ref|YP_001191831.1|	-	5.3e-148	493.4	0.0	5.9e-148	493.3	0.0	1.0	1	0	0	1	1	1	1	tRNA-splicing	ligase	RtcB
DS	PF01916.12	gi|146304516|ref|YP_001191832.1|	-	7.5e-76	255.0	0.0	8.5e-76	254.9	0.0	1.0	1	0	0	1	1	1	1	Deoxyhypusine	synthase
Topo-VIb_trans	PF09239.6	gi|146304517|ref|YP_001191833.1|	-	1.2e-67	226.4	0.1	2.7e-67	225.2	0.0	1.6	1	0	0	1	1	1	1	Topoisomerase	VI	B	subunit,	transducer
HATPase_c_3	PF13589.1	gi|146304517|ref|YP_001191833.1|	-	1e-12	47.8	0.0	2.7e-12	46.5	0.0	1.7	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c	PF02518.21	gi|146304517|ref|YP_001191833.1|	-	4.2e-12	45.7	0.0	9e-12	44.6	0.0	1.5	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FbpA	PF05833.6	gi|146304517|ref|YP_001191833.1|	-	1.1e-07	30.8	1.5	1.4e-07	30.4	0.0	1.8	2	0	0	2	2	2	1	Fibronectin-binding	protein	A	N-terminus	(FbpA)
Ribosomal_S13	PF00416.17	gi|146304517|ref|YP_001191833.1|	-	2.3e-05	24.7	0.1	8.7e-05	22.9	0.0	2.0	2	0	0	2	2	2	1	Ribosomal	protein	S13/S18
Flagellar_rod	PF05149.7	gi|146304517|ref|YP_001191833.1|	-	0.0043	16.3	0.9	0.025	13.7	0.5	2.0	2	0	0	2	2	2	1	Paraflagellar	rod	protein
HSCB_C	PF07743.8	gi|146304517|ref|YP_001191833.1|	-	0.0067	16.8	0.8	0.16	12.4	0.4	2.6	2	0	0	2	2	2	1	HSCB	C-terminal	oligomerisation	domain
TP6A_N	PF04406.9	gi|146304518|ref|YP_001191834.1|	-	8.2e-23	79.8	0.1	1.4e-22	79.1	0.1	1.4	1	0	0	1	1	1	1	Type	IIB	DNA	topoisomerase
NTF-like	PF14540.1	gi|146304518|ref|YP_001191834.1|	-	0.026	14.1	0.0	0.07	12.7	0.0	1.7	1	0	0	1	1	1	0	Nucleotidyltransferase-like
DUF2399	PF09664.5	gi|146304518|ref|YP_001191834.1|	-	0.029	14.2	0.0	0.051	13.4	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	C-terminus	(DUF2399)
HAD_2	PF13419.1	gi|146304518|ref|YP_001191834.1|	-	0.036	14.3	0.0	0.064	13.4	0.0	1.4	1	0	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
eIF-5a	PF01287.15	gi|146304519|ref|YP_001191835.1|	-	2.3e-16	59.4	2.7	3.9e-16	58.7	1.9	1.4	1	0	0	1	1	1	1	Eukaryotic	elongation	factor	5A	hypusine,	DNA-binding	OB	fold
EFP_N	PF08207.7	gi|146304519|ref|YP_001191835.1|	-	2.3e-05	24.1	0.0	5.2e-05	23.0	0.0	1.7	1	0	0	1	1	1	1	Elongation	factor	P	(EF-P)	KOW-like	domain
KOW	PF00467.24	gi|146304519|ref|YP_001191835.1|	-	0.0086	15.7	2.4	0.026	14.2	0.2	2.5	2	0	0	2	2	2	1	KOW	motif
EFP	PF01132.15	gi|146304519|ref|YP_001191835.1|	-	0.012	15.2	0.1	0.022	14.4	0.1	1.5	1	0	0	1	1	1	0	Elongation	factor	P	(EF-P)	OB	domain
SRP54	PF00448.17	gi|146304520|ref|YP_001191836.1|	-	3.7e-74	248.4	0.0	5.5e-74	247.8	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
SRP_SPB	PF02978.14	gi|146304520|ref|YP_001191836.1|	-	8.4e-32	109.5	8.6	2.5e-31	108.0	2.5	2.6	2	0	0	2	2	2	1	Signal	peptide	binding	domain
SRP54_N	PF02881.14	gi|146304520|ref|YP_001191836.1|	-	1e-14	54.4	0.1	1.1e-13	51.1	0.2	2.6	2	0	0	2	2	2	1	SRP54-type	protein,	helical	bundle	domain
CbiA	PF01656.18	gi|146304520|ref|YP_001191836.1|	-	3e-09	36.5	0.2	1.3e-08	34.5	0.1	2.0	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
MobB	PF03205.9	gi|146304520|ref|YP_001191836.1|	-	9.6e-06	25.3	0.4	3.5e-05	23.5	0.3	2.0	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_33	PF13671.1	gi|146304520|ref|YP_001191836.1|	-	1.7e-05	24.7	0.0	3.8e-05	23.5	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146304520|ref|YP_001191836.1|	-	2.2e-05	24.6	0.0	0.00013	22.1	0.0	2.2	2	0	0	2	2	2	1	AAA	domain
AAA_31	PF13614.1	gi|146304520|ref|YP_001191836.1|	-	0.00066	19.6	0.0	0.07	13.0	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
cobW	PF02492.14	gi|146304520|ref|YP_001191836.1|	-	0.00071	19.0	0.2	0.0032	16.9	0.1	2.0	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
Zeta_toxin	PF06414.7	gi|146304520|ref|YP_001191836.1|	-	0.0023	17.0	0.0	0.0054	15.8	0.0	1.6	1	0	0	1	1	1	1	Zeta	toxin
ArgK	PF03308.11	gi|146304520|ref|YP_001191836.1|	-	0.0027	16.5	1.4	0.036	12.8	0.0	2.4	2	0	0	2	2	2	1	ArgK	protein
AAA_30	PF13604.1	gi|146304520|ref|YP_001191836.1|	-	0.003	17.1	0.4	0.011	15.3	0.3	2.0	1	1	0	1	1	1	1	AAA	domain
ATP_bind_1	PF03029.12	gi|146304520|ref|YP_001191836.1|	-	0.004	16.7	0.2	0.59	9.6	0.0	2.9	3	0	0	3	3	3	1	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.1	gi|146304520|ref|YP_001191836.1|	-	0.0051	17.6	1.9	0.022	15.5	0.7	2.5	2	1	0	2	2	1	1	AAA	domain
AAA_28	PF13521.1	gi|146304520|ref|YP_001191836.1|	-	0.0087	16.0	0.0	0.016	15.1	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|146304520|ref|YP_001191836.1|	-	0.01	16.0	0.7	0.1	12.7	0.3	2.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
6PF2K	PF01591.13	gi|146304520|ref|YP_001191836.1|	-	0.014	14.5	0.1	0.052	12.6	0.0	1.9	2	0	0	2	2	2	0	6-phosphofructo-2-kinase
AAA_5	PF07728.9	gi|146304520|ref|YP_001191836.1|	-	0.015	15.0	0.1	0.044	13.5	0.1	1.8	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_19	PF13245.1	gi|146304520|ref|YP_001191836.1|	-	0.015	15.0	0.1	0.053	13.2	0.1	1.9	2	0	0	2	2	1	0	Part	of	AAA	domain
MMR_HSR1	PF01926.18	gi|146304520|ref|YP_001191836.1|	-	0.016	15.1	0.5	0.11	12.4	0.1	2.5	2	2	0	2	2	2	0	50S	ribosome-binding	GTPase
KaiC	PF06745.8	gi|146304520|ref|YP_001191836.1|	-	0.019	14.0	2.5	0.032	13.3	0.2	2.4	2	1	0	2	2	2	0	KaiC
AAA_18	PF13238.1	gi|146304520|ref|YP_001191836.1|	-	0.023	14.9	1.5	0.15	12.3	1.0	2.5	1	1	0	1	1	1	0	AAA	domain
AAA_10	PF12846.2	gi|146304520|ref|YP_001191836.1|	-	0.035	13.5	0.2	0.17	11.2	0.1	2.1	1	1	1	2	2	2	0	AAA-like	domain
AAA_25	PF13481.1	gi|146304520|ref|YP_001191836.1|	-	0.036	13.4	0.1	0.48	9.7	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
GTP_EFTU	PF00009.22	gi|146304520|ref|YP_001191836.1|	-	0.061	12.7	0.1	0.36	10.2	0.0	2.2	2	2	1	3	3	3	0	Elongation	factor	Tu	GTP	binding	domain
APS_kinase	PF01583.15	gi|146304520|ref|YP_001191836.1|	-	0.082	12.5	0.2	0.22	11.1	0.0	1.8	2	0	0	2	2	1	0	Adenylylsulphate	kinase
LpxK	PF02606.9	gi|146304520|ref|YP_001191836.1|	-	0.084	11.8	0.2	0.18	10.6	0.1	1.5	1	0	0	1	1	1	0	Tetraacyldisaccharide-1-P	4'-kinase
Thymidylate_kin	PF02223.12	gi|146304520|ref|YP_001191836.1|	-	1.3	8.3	4.8	0.51	9.6	0.2	2.5	3	0	0	3	3	3	0	Thymidylate	kinase
NAD_binding_2	PF03446.10	gi|146304522|ref|YP_001191838.1|	-	3.9e-34	117.8	0.9	5.4e-34	117.3	0.6	1.2	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_binding_11	PF14833.1	gi|146304522|ref|YP_001191838.1|	-	1.4e-27	96.1	0.1	2.8e-27	95.2	0.0	1.5	1	0	0	1	1	1	1	NAD-binding	of	NADP-dependent	3-hydroxyisobutyrate	dehydrogenase
F420_oxidored	PF03807.12	gi|146304522|ref|YP_001191838.1|	-	2.1e-08	34.4	0.1	4.7e-08	33.3	0.1	1.6	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
2-Hacid_dh_C	PF02826.14	gi|146304522|ref|YP_001191838.1|	-	3.1e-05	23.1	0.1	8.7e-05	21.7	0.0	1.7	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|146304522|ref|YP_001191838.1|	-	0.00035	19.9	0.1	0.0006	19.2	0.1	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
GFO_IDH_MocA	PF01408.17	gi|146304522|ref|YP_001191838.1|	-	0.0018	18.8	0.0	0.0052	17.2	0.0	1.8	2	0	0	2	2	2	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
Shikimate_DH	PF01488.15	gi|146304522|ref|YP_001191838.1|	-	0.0028	17.7	0.1	0.0058	16.7	0.0	1.6	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
Rossmann-like	PF10727.4	gi|146304522|ref|YP_001191838.1|	-	0.058	13.1	0.1	0.16	11.6	0.1	1.7	1	1	1	2	2	2	0	Rossmann-like	domain
Glycos_transf_1	PF00534.15	gi|146304523|ref|YP_001191839.1|	-	3.3e-23	81.9	0.0	4.6e-23	81.5	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|146304523|ref|YP_001191839.1|	-	2.8e-20	72.7	0.1	4.6e-20	72.0	0.0	1.4	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.1	gi|146304523|ref|YP_001191839.1|	-	1.1e-15	58.1	0.0	4.3e-14	52.9	0.0	2.3	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_4	PF13692.1	gi|146304523|ref|YP_001191839.1|	-	2.7e-07	30.8	0.0	4.8e-07	30.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146304523|ref|YP_001191839.1|	-	4.6e-06	26.8	0.0	1.8e-05	24.9	0.0	2.0	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_2	PF13477.1	gi|146304523|ref|YP_001191839.1|	-	0.024	14.4	0.3	0.2	11.4	0.2	2.2	1	1	0	1	1	1	0	Glycosyl	transferase	4-like
adh_short_C2	PF13561.1	gi|146304524|ref|YP_001191840.1|	-	1.2e-20	74.2	0.0	2.2e-20	73.4	0.0	1.4	1	1	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|146304524|ref|YP_001191840.1|	-	5.3e-12	45.9	0.0	7e-12	45.5	0.0	1.2	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146304524|ref|YP_001191840.1|	-	0.009	15.6	0.0	0.013	15.1	0.0	1.2	1	0	0	1	1	1	1	KR	domain
3HCDH_N	PF02737.13	gi|146304524|ref|YP_001191840.1|	-	0.016	14.8	0.0	0.025	14.2	0.0	1.2	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|146304524|ref|YP_001191840.1|	-	0.084	12.8	0.0	0.15	12.0	0.0	1.5	1	1	0	1	1	1	0	NADH(P)-binding
THF_DHG_CYH_C	PF02882.14	gi|146304524|ref|YP_001191840.1|	-	0.098	11.7	0.0	0.21	10.6	0.0	1.5	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Cren7	PF11520.3	gi|146304525|ref|YP_001191841.1|	-	2.3e-28	97.5	1.5	2.5e-28	97.4	1.1	1.0	1	0	0	1	1	1	1	Chromatin	protein	Cren7
AA_kinase	PF00696.23	gi|146304526|ref|YP_001191842.1|	-	4.5e-35	121.3	0.0	5.4e-35	121.0	0.0	1.1	1	0	0	1	1	1	1	Amino	acid	kinase	family
Glyco_trans_4_4	PF13579.1	gi|146304526|ref|YP_001191842.1|	-	0.0061	16.7	0.0	0.0087	16.2	0.0	1.3	1	1	0	1	1	1	1	Glycosyl	transferase	4-like	domain
VWA_CoxE	PF05762.9	gi|146304526|ref|YP_001191842.1|	-	0.061	12.4	0.0	8.9	5.3	0.0	2.1	2	0	0	2	2	2	0	VWA	domain	containing	CoxE-like	protein
HMGL-like	PF00682.14	gi|146304528|ref|YP_001191844.1|	-	1.1e-66	224.8	2.7	1.6e-66	224.3	1.8	1.2	1	0	0	1	1	1	1	HMGL-like
AsnC_trans_reg	PF01037.16	gi|146304528|ref|YP_001191844.1|	-	2.7e-15	55.8	0.2	2.7e-15	55.8	0.1	2.9	5	0	0	5	5	5	1	AsnC	family
AP_endonuc_2	PF01261.19	gi|146304528|ref|YP_001191844.1|	-	0.0013	18.0	0.5	0.004	16.4	0.4	2.0	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
ACT_4	PF13291.1	gi|146304528|ref|YP_001191844.1|	-	0.0067	16.7	6.0	0.045	14.0	0.2	4.3	4	1	1	5	5	5	1	ACT	domain
Glyco_hydro_97	PF10566.4	gi|146304528|ref|YP_001191844.1|	-	0.016	14.2	0.0	0.025	13.6	0.0	1.2	1	0	0	1	1	1	0	Glycoside	hydrolase	97
Radical_SAM	PF04055.16	gi|146304528|ref|YP_001191844.1|	-	0.23	11.6	1.5	5	7.2	0.5	2.9	1	1	1	2	2	2	0	Radical	SAM	superfamily
PaREP1	PF05942.6	gi|146304529|ref|YP_001191845.1|	-	7.4e-22	77.3	4.2	9.7e-22	77.0	2.9	1.1	1	0	0	1	1	1	1	Archaeal	PaREP1/PaREP8	family
EzrA	PF06160.7	gi|146304529|ref|YP_001191845.1|	-	0.044	11.9	0.1	0.053	11.7	0.1	1.2	1	0	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
HEPN	PF05168.9	gi|146304529|ref|YP_001191845.1|	-	0.091	12.6	1.7	0.19	11.6	1.1	1.7	1	1	0	1	1	1	0	HEPN	domain
DUF357	PF04010.8	gi|146304529|ref|YP_001191845.1|	-	0.11	12.2	0.3	1.8	8.2	0.0	2.4	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF357)
DUF1626	PF07788.6	gi|146304531|ref|YP_001191847.1|	-	1.3e-05	24.8	1.1	5.5e-05	22.8	0.8	2.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1626)
AAA_27	PF13514.1	gi|146304531|ref|YP_001191847.1|	-	0.00037	18.3	29.9	0.00056	17.7	20.7	1.2	1	0	0	1	1	1	1	AAA	domain
Spc7	PF08317.6	gi|146304531|ref|YP_001191847.1|	-	0.00091	17.9	41.0	0.035	12.7	8.5	2.1	1	1	1	2	2	2	2	Spc7	kinetochore	protein
DUF4631	PF15450.1	gi|146304531|ref|YP_001191847.1|	-	0.0016	16.8	35.8	0.0022	16.3	24.8	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4631)
AAA_13	PF13166.1	gi|146304531|ref|YP_001191847.1|	-	0.0076	14.7	23.4	0.012	14.1	16.2	1.3	1	0	0	1	1	1	1	AAA	domain
DUF1664	PF07889.7	gi|146304531|ref|YP_001191847.1|	-	0.015	15.0	26.4	0.14	12.0	5.4	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
NERD	PF08378.6	gi|146304531|ref|YP_001191847.1|	-	0.017	15.3	0.2	0.051	13.8	0.1	1.8	1	0	0	1	1	1	0	Nuclease-related	domain
DUF4143	PF13635.1	gi|146304531|ref|YP_001191847.1|	-	0.027	14.6	0.1	0.073	13.2	0.1	1.8	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4143)
UPF0184	PF03670.8	gi|146304531|ref|YP_001191847.1|	-	0.029	14.5	21.1	0.79	9.9	0.7	4.9	1	1	4	5	5	5	0	Uncharacterised	protein	family	(UPF0184)
DUF234	PF03008.9	gi|146304531|ref|YP_001191847.1|	-	0.033	14.3	0.8	0.11	12.5	0.6	2.0	1	0	0	1	1	1	0	Archaea	bacterial	proteins	of	unknown	function
Reo_sigmaC	PF04582.7	gi|146304531|ref|YP_001191847.1|	-	0.068	12.3	14.0	0.27	10.3	1.4	2.5	1	1	0	2	2	2	0	Reovirus	sigma	C	capsid	protein
ATG16	PF08614.6	gi|146304531|ref|YP_001191847.1|	-	0.094	12.5	41.2	0.16	11.8	17.5	2.5	1	1	1	2	2	2	0	Autophagy	protein	16	(ATG16)
BLOC1_2	PF10046.4	gi|146304531|ref|YP_001191847.1|	-	0.12	12.5	30.7	0.52	10.4	6.0	4.3	1	1	3	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Vac_Fusion	PF02346.11	gi|146304531|ref|YP_001191847.1|	-	0.2	11.0	17.6	2	7.9	1.1	4.7	1	1	4	5	5	5	0	Chordopoxvirus	fusion	protein
ERM	PF00769.14	gi|146304531|ref|YP_001191847.1|	-	0.31	10.5	61.9	0.27	10.7	15.2	2.7	1	1	2	3	3	3	0	Ezrin/radixin/moesin	family
V_ATPase_I	PF01496.14	gi|146304531|ref|YP_001191847.1|	-	0.64	7.8	31.7	1.5	6.5	8.3	2.2	1	1	1	2	2	2	0	V-type	ATPase	116kDa	subunit	family
Rab5-bind	PF09311.6	gi|146304531|ref|YP_001191847.1|	-	0.99	9.2	46.3	4.6	7.0	16.1	3.1	1	1	2	3	3	3	0	Rabaptin-like	protein
YjcZ	PF13990.1	gi|146304531|ref|YP_001191847.1|	-	0.99	8.4	26.3	0.38	9.8	5.7	2.9	1	1	2	3	3	3	0	YjcZ-like	protein
FH2	PF02181.18	gi|146304531|ref|YP_001191847.1|	-	1	8.2	32.8	1.2	7.9	5.3	3.1	1	1	2	3	3	3	0	Formin	Homology	2	Domain
IFT57	PF10498.4	gi|146304531|ref|YP_001191847.1|	-	1.3	7.6	33.0	6.7	5.3	9.8	2.4	1	1	1	2	2	2	0	Intra-flagellar	transport	protein	57
FA_desaturase_2	PF03405.9	gi|146304531|ref|YP_001191847.1|	-	1.5	7.5	13.8	1.5	7.4	0.9	3.2	1	1	3	4	4	4	0	Fatty	acid	desaturase
DUF812	PF05667.6	gi|146304531|ref|YP_001191847.1|	-	1.5	7.2	34.6	2.3	6.6	24.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
DASH_Dam1	PF08653.5	gi|146304531|ref|YP_001191847.1|	-	2.1	8.1	18.3	21	4.9	0.2	5.9	1	1	4	5	5	5	0	DASH	complex	subunit	Dam1
EzrA	PF06160.7	gi|146304531|ref|YP_001191847.1|	-	2.1	6.4	36.3	1.4	7.0	9.7	2.6	1	1	1	2	2	2	0	Septation	ring	formation	regulator,	EzrA
IncA	PF04156.9	gi|146304531|ref|YP_001191847.1|	-	2.4	7.7	46.7	0.19	11.2	3.2	3.1	1	1	2	3	3	3	0	IncA	protein
MCPsignal	PF00015.16	gi|146304531|ref|YP_001191847.1|	-	3.1	7.2	25.6	6.9	6.1	4.2	2.8	1	1	2	3	3	3	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
ADIP	PF11559.3	gi|146304531|ref|YP_001191847.1|	-	5.4	6.9	41.2	2.1	8.2	10.5	2.8	1	1	1	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
TPR_MLP1_2	PF07926.7	gi|146304531|ref|YP_001191847.1|	-	6.1	6.5	46.5	0.7	9.6	9.7	3.1	1	1	2	3	3	3	0	TPR/MLP1/MLP2-like	protein
DUF2951	PF11166.3	gi|146304531|ref|YP_001191847.1|	-	8.4	6.3	24.6	0.93	9.3	2.2	4.1	1	1	3	5	5	5	0	Protein	of	unknown	function	(DUF2951)
Fib_alpha	PF08702.5	gi|146304531|ref|YP_001191847.1|	-	9.1	6.3	25.9	1.6	8.8	8.8	3.1	1	1	2	3	3	3	0	Fibrinogen	alpha/beta	chain	family
DUF4064	PF13273.1	gi|146304532|ref|YP_001191848.1|	-	1.3	9.1	7.7	0.95	9.6	0.7	2.3	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF4064)
COX15-CtaA	PF02628.10	gi|146304533|ref|YP_001191849.1|	-	7.3	5.3	12.1	0.91	8.3	4.9	1.8	1	1	0	2	2	2	0	Cytochrome	oxidase	assembly	protein
Glyco_trans_2_3	PF13632.1	gi|146304534|ref|YP_001191850.1|	-	5e-22	78.5	0.9	7.9e-22	77.9	0.6	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	group	2
Glyco_tranf_2_3	PF13641.1	gi|146304534|ref|YP_001191850.1|	-	1.5e-14	54.3	0.4	2.3e-14	53.7	0.3	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Sugar_tr	PF00083.19	gi|146304535|ref|YP_001191851.1|	-	2e-44	151.9	20.6	2.7e-44	151.4	14.3	1.2	1	0	0	1	1	1	1	Sugar	(and	other)	transporter
MFS_1	PF07690.11	gi|146304535|ref|YP_001191851.1|	-	7.1e-28	97.3	49.4	4.8e-19	68.2	17.0	3.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
OATP	PF03137.15	gi|146304535|ref|YP_001191851.1|	-	0.098	10.6	11.9	0.037	12.0	1.4	3.0	2	1	1	3	3	3	0	Organic	Anion	Transporter	Polypeptide	(OATP)	family
DUF1228	PF06779.9	gi|146304535|ref|YP_001191851.1|	-	3.2	7.8	11.8	0.16	11.9	0.2	3.3	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1228)
HTH_10	PF04967.7	gi|146304536|ref|YP_001191852.1|	-	2.4e-17	62.2	0.1	3.9e-17	61.5	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
GerE	PF00196.14	gi|146304536|ref|YP_001191852.1|	-	0.0036	16.5	0.0	0.0084	15.4	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	luxR	family
Aldedh	PF00171.17	gi|146304537|ref|YP_001191853.1|	-	4.6e-153	509.8	0.3	5.4e-153	509.6	0.2	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
Glyoxalase	PF00903.20	gi|146304538|ref|YP_001191854.1|	-	1.4e-28	99.4	2.1	2e-15	56.8	0.7	2.1	2	0	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_2	PF12681.2	gi|146304538|ref|YP_001191854.1|	-	2.1e-18	66.8	0.7	5.3e-08	33.4	0.0	2.3	2	0	0	2	2	2	2	Glyoxalase-like	domain
Glyoxalase_4	PF13669.1	gi|146304538|ref|YP_001191854.1|	-	3.8e-11	42.9	0.3	1.1e-05	25.4	0.2	2.6	2	1	0	2	2	2	2	Glyoxalase/Bleomycin	resistance	protein/Dioxygenase	superfamily
Glyoxalase_3	PF13468.1	gi|146304538|ref|YP_001191854.1|	-	0.02	14.8	2.0	3.7	7.4	0.0	3.0	3	1	1	4	4	4	0	Glyoxalase-like	domain
HpaB_N	PF11794.3	gi|146304539|ref|YP_001191855.1|	-	7.4e-76	255.0	0.0	1e-75	254.5	0.0	1.2	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	N	terminal
HpaB	PF03241.8	gi|146304539|ref|YP_001191855.1|	-	6.7e-53	178.5	0.0	1e-52	177.9	0.0	1.3	1	0	0	1	1	1	1	4-hydroxyphenylacetate	3-hydroxylase	C	terminal
FAA_hydrolase	PF01557.13	gi|146304540|ref|YP_001191856.1|	-	1.8e-45	155.0	0.0	2.3e-45	154.7	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.4	gi|146304540|ref|YP_001191856.1|	-	2.2e-10	40.7	0.0	4.6e-10	39.7	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
adh_short	PF00106.20	gi|146304541|ref|YP_001191857.1|	-	8.7e-25	87.5	0.1	7e-24	84.6	0.1	2.1	1	1	0	1	1	1	1	short	chain	dehydrogenase
adh_short_C2	PF13561.1	gi|146304541|ref|YP_001191857.1|	-	5.8e-16	58.9	0.1	9.3e-16	58.3	0.0	1.3	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
Epimerase	PF01370.16	gi|146304541|ref|YP_001191857.1|	-	7.4e-09	35.3	0.1	1.1e-08	34.8	0.0	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
KR	PF08659.5	gi|146304541|ref|YP_001191857.1|	-	7.8e-08	32.1	0.1	8.1e-06	25.6	0.0	2.1	1	1	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|146304541|ref|YP_001191857.1|	-	7.9e-06	26.0	0.1	2e-05	24.6	0.1	1.5	1	1	0	1	1	1	1	NADH(P)-binding
RmlD_sub_bind	PF04321.12	gi|146304541|ref|YP_001191857.1|	-	0.0024	16.8	0.0	0.0035	16.2	0.0	1.3	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Eno-Rase_NADH_b	PF12242.3	gi|146304541|ref|YP_001191857.1|	-	0.022	14.5	1.0	0.087	12.6	0.0	2.2	3	0	0	3	3	3	0	NAD(P)H	binding	domain	of	trans-2-enoyl-CoA	reductase
TatD_DNase	PF01026.16	gi|146304542|ref|YP_001191858.1|	-	1.7e-31	109.3	0.0	4.4e-31	107.9	0.0	1.6	1	1	0	1	1	1	1	TatD	related	DNase
AP_endonuc_2	PF01261.19	gi|146304542|ref|YP_001191858.1|	-	0.13	11.5	0.0	0.2	10.9	0.0	1.6	1	1	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
SBP_bac_11	PF13531.1	gi|146304543|ref|YP_001191859.1|	-	2e-20	73.3	1.6	3.1e-20	72.7	1.1	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.20	gi|146304543|ref|YP_001191859.1|	-	3.1e-05	23.8	6.1	6.1e-05	22.8	3.8	1.8	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
Shisa	PF13908.1	gi|146304543|ref|YP_001191859.1|	-	0.0028	17.8	0.1	0.0044	17.2	0.1	1.3	1	0	0	1	1	1	1	Wnt	and	FGF	inhibitory	regulator
SoxE	PF06525.6	gi|146304543|ref|YP_001191859.1|	-	0.0064	15.7	3.6	0.0064	15.7	2.5	2.9	3	1	0	3	3	3	1	Sulfocyanin	(SoxE)
DUF1628	PF07790.6	gi|146304543|ref|YP_001191859.1|	-	0.024	15.3	1.1	0.058	14.1	0.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1628)
FBD	PF08387.5	gi|146304543|ref|YP_001191859.1|	-	0.054	12.9	0.0	0.1	12.1	0.0	1.4	1	0	0	1	1	1	0	FBD
Tir_receptor_C	PF07489.6	gi|146304543|ref|YP_001191859.1|	-	7.3	6.2	8.9	15	5.2	6.2	1.7	1	1	0	1	1	1	0	Translocated	intimin	receptor	(Tir)	C-terminus
BPD_transp_1	PF00528.17	gi|146304544|ref|YP_001191860.1|	-	9.1e-16	57.9	9.6	9.1e-16	57.9	6.6	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Zn-ribbon_8	PF09723.5	gi|146304545|ref|YP_001191861.1|	-	0.012	15.5	2.5	1.8	8.5	0.1	2.2	2	0	0	2	2	2	0	Zinc	ribbon	domain
Prok-RING_1	PF14446.1	gi|146304545|ref|YP_001191861.1|	-	0.025	14.3	0.7	0.52	10.0	0.0	2.1	2	0	0	2	2	2	0	Prokaryotic	RING	finger	family	1
zinc_ribbon_2	PF13240.1	gi|146304545|ref|YP_001191861.1|	-	0.027	13.9	1.1	0.027	13.9	0.8	1.7	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|146304545|ref|YP_001191861.1|	-	0.041	13.7	1.0	2.8	7.8	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|146304545|ref|YP_001191861.1|	-	0.042	13.0	0.4	0.042	13.0	0.3	1.8	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|146304545|ref|YP_001191861.1|	-	0.053	12.7	0.7	0.3	10.3	0.1	2.0	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
DZR	PF12773.2	gi|146304545|ref|YP_001191861.1|	-	0.059	13.1	0.2	1.7	8.5	0.0	2.0	2	0	0	2	2	2	0	Double	zinc	ribbon
zf-H2C2_2	PF13465.1	gi|146304545|ref|YP_001191861.1|	-	0.13	12.6	2.6	2.3	8.6	0.1	2.2	2	0	0	2	2	2	0	Zinc-finger	double	domain
TF_Zn_Ribbon	PF08271.7	gi|146304545|ref|YP_001191861.1|	-	0.17	11.2	1.7	2.2	7.6	0.1	2.2	2	0	0	2	2	2	0	TFIIB	zinc-binding
UPF0547	PF10571.4	gi|146304545|ref|YP_001191861.1|	-	0.22	11.2	1.8	3.6	7.3	0.5	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.13	gi|146304545|ref|YP_001191861.1|	-	0.38	10.4	4.1	9.6	5.9	0.8	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
zf-IS66	PF13005.2	gi|146304545|ref|YP_001191861.1|	-	0.53	10.3	3.8	3	7.8	0.0	2.3	2	1	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
A2L_zn_ribbon	PF08792.5	gi|146304545|ref|YP_001191861.1|	-	1.2	8.6	4.3	2.3	7.8	0.1	2.2	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|146304545|ref|YP_001191861.1|	-	1.3	8.5	11.0	0.18	11.3	1.2	2.4	3	0	0	3	3	3	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-C2H2	PF00096.21	gi|146304545|ref|YP_001191861.1|	-	1.6	9.2	6.1	5.8	7.4	0.4	2.3	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
RIO1	PF01163.17	gi|146304546|ref|YP_001191862.1|	-	0.0016	17.8	0.0	0.0023	17.3	0.0	1.3	1	0	0	1	1	1	1	RIO1	family
APH	PF01636.18	gi|146304546|ref|YP_001191862.1|	-	0.054	13.2	0.1	0.35	10.5	0.0	1.9	1	1	0	2	2	2	0	Phosphotransferase	enzyme	family
tRNA_NucTransf2	PF09249.6	gi|146304547|ref|YP_001191863.1|	-	1.8e-44	150.2	0.0	2.9e-44	149.5	0.0	1.4	1	0	0	1	1	1	1	tRNA	nucleotidyltransferase,	second	domain
NTP_transf_2	PF01909.18	gi|146304547|ref|YP_001191863.1|	-	2.6e-12	46.9	0.2	6.7e-12	45.5	0.2	1.7	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
LigT_PEase	PF02834.11	gi|146304548|ref|YP_001191864.1|	-	2.4e-30	104.3	0.2	4.4e-16	58.6	0.0	2.0	2	0	0	2	2	2	2	LigT	like	Phosphoesterase
2_5_RNA_ligase2	PF13563.1	gi|146304548|ref|YP_001191864.1|	-	2.3e-14	53.3	0.0	2.8e-14	53.0	0.0	1.1	1	0	0	1	1	1	1	2'-5'	RNA	ligase	superfamily
AKAP7_NLS	PF10469.4	gi|146304548|ref|YP_001191864.1|	-	1.2e-11	44.7	0.0	1.4e-11	44.5	0.0	1.2	1	0	0	1	1	1	1	AKAP7	2'5'	RNA	ligase-like	domain
AAA_18	PF13238.1	gi|146304549|ref|YP_001191865.1|	-	8.1e-10	39.1	0.6	1.5e-09	38.2	0.4	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146304549|ref|YP_001191865.1|	-	2.6e-09	37.9	0.9	3.5e-09	37.5	0.6	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146304549|ref|YP_001191865.1|	-	1.3e-07	31.5	0.0	2e-07	30.9	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|146304549|ref|YP_001191865.1|	-	0.0001	21.4	0.1	0.00013	21.1	0.0	1.2	1	0	0	1	1	1	1	Zeta	toxin
ADK	PF00406.17	gi|146304549|ref|YP_001191865.1|	-	0.0032	17.3	0.0	0.0036	17.2	0.0	1.2	1	0	0	1	1	1	1	Adenylate	kinase
AAA_28	PF13521.1	gi|146304549|ref|YP_001191865.1|	-	0.0032	17.4	0.2	0.012	15.5	0.0	1.8	1	1	1	2	2	2	1	AAA	domain
CoaE	PF01121.15	gi|146304549|ref|YP_001191865.1|	-	0.041	13.2	0.2	4.9	6.5	0.0	2.2	1	1	1	2	2	2	0	Dephospho-CoA	kinase
RNA_binding	PF01877.12	gi|146304550|ref|YP_001191866.1|	-	3.2e-28	98.1	0.2	3.7e-28	97.9	0.2	1.0	1	0	0	1	1	1	1	RNA	binding
Lactamase_B_2	PF12706.2	gi|146304551|ref|YP_001191867.1|	-	7.7e-29	100.6	0.0	1.2e-28	100.0	0.0	1.3	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146304551|ref|YP_001191867.1|	-	1.4e-13	50.9	0.0	9.3e-12	44.9	0.0	2.2	2	0	0	2	2	2	2	Metallo-beta-lactamase	superfamily
Lactamase_B_3	PF13483.1	gi|146304551|ref|YP_001191867.1|	-	0.036	13.7	0.0	0.083	12.6	0.0	1.6	1	1	0	1	1	1	0	Beta-lactamase	superfamily	domain
UPF0020	PF01170.13	gi|146304552|ref|YP_001191868.1|	-	1.2e-26	93.3	0.0	2e-26	92.6	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_26	PF13659.1	gi|146304552|ref|YP_001191868.1|	-	8.1e-08	32.3	0.0	1.6e-07	31.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
N6_N4_Mtase	PF01555.13	gi|146304552|ref|YP_001191868.1|	-	2.1e-05	24.1	0.0	0.0087	15.5	0.0	2.2	2	0	0	2	2	2	2	DNA	methylase
Methyltransf_31	PF13847.1	gi|146304552|ref|YP_001191868.1|	-	0.00013	21.5	0.0	0.00038	20.0	0.0	1.7	2	0	0	2	2	2	1	Methyltransferase	domain
Cons_hypoth95	PF03602.10	gi|146304552|ref|YP_001191868.1|	-	0.00014	21.3	0.0	0.00027	20.3	0.0	1.4	1	0	0	1	1	1	1	Conserved	hypothetical	protein	95
ELFV_dehydrog_N	PF02812.13	gi|146304552|ref|YP_001191868.1|	-	0.032	13.8	0.0	0.062	12.8	0.0	1.4	1	0	0	1	1	1	0	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
Methyltransf_18	PF12847.2	gi|146304552|ref|YP_001191868.1|	-	0.1	13.1	0.0	0.24	11.9	0.0	1.7	2	0	0	2	2	2	0	Methyltransferase	domain
Pribosyltran_N	PF13793.1	gi|146304553|ref|YP_001191869.1|	-	8.7e-33	112.5	0.0	3.4e-30	104.1	0.0	2.2	2	0	0	2	2	2	2	N-terminal	domain	of	ribose	phosphate	pyrophosphokinase
Pribosyltran	PF00156.22	gi|146304553|ref|YP_001191869.1|	-	3.7e-16	58.9	0.8	5.7e-15	55.1	0.0	2.8	4	0	0	4	4	4	1	Phosphoribosyl	transferase	domain
Pribosyl_synth	PF14572.1	gi|146304553|ref|YP_001191869.1|	-	9.4e-08	32.0	1.9	8.3e-07	28.9	0.4	2.2	2	0	0	2	2	2	1	Phosphoribosyl	synthetase-associated	domain
PRTase_2	PF15609.1	gi|146304553|ref|YP_001191869.1|	-	0.0035	16.6	0.0	0.0072	15.6	0.0	1.7	2	0	0	2	2	2	1	Phosphoribosyl	transferase
UPRTase	PF14681.1	gi|146304553|ref|YP_001191869.1|	-	0.011	14.9	0.0	0.039	13.1	0.0	1.9	2	0	0	2	2	2	0	Uracil	phosphoribosyltransferase
ATP_bind_1	PF03029.12	gi|146304554|ref|YP_001191870.1|	-	8.6e-55	185.8	0.0	9.7e-55	185.6	0.0	1.0	1	0	0	1	1	1	1	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.1	gi|146304554|ref|YP_001191870.1|	-	6.5e-06	26.9	0.0	1.4e-05	25.8	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
ArgK	PF03308.11	gi|146304554|ref|YP_001191870.1|	-	0.00023	20.0	0.0	0.00035	19.4	0.0	1.2	1	0	0	1	1	1	1	ArgK	protein
CbiA	PF01656.18	gi|146304554|ref|YP_001191870.1|	-	0.00032	20.1	0.0	0.00049	19.5	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_16	PF13191.1	gi|146304554|ref|YP_001191870.1|	-	0.00034	20.6	0.0	0.0014	18.6	0.0	2.0	2	0	0	2	2	2	1	AAA	ATPase	domain
MobB	PF03205.9	gi|146304554|ref|YP_001191870.1|	-	0.00072	19.2	0.0	0.0012	18.5	0.0	1.3	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KTI12	PF08433.5	gi|146304554|ref|YP_001191870.1|	-	0.0008	18.6	0.0	0.0012	18.1	0.0	1.2	1	0	0	1	1	1	1	Chromatin	associated	protein	KTI12
cobW	PF02492.14	gi|146304554|ref|YP_001191870.1|	-	0.0014	18.1	0.0	0.025	14.0	0.0	2.3	2	1	0	2	2	2	1	CobW/HypB/UreG,	nucleotide-binding	domain
AAA_18	PF13238.1	gi|146304554|ref|YP_001191870.1|	-	0.0015	18.8	0.0	0.0022	18.2	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
APS_kinase	PF01583.15	gi|146304554|ref|YP_001191870.1|	-	0.0016	18.1	0.0	0.0025	17.5	0.0	1.3	1	0	0	1	1	1	1	Adenylylsulphate	kinase
SRP54	PF00448.17	gi|146304554|ref|YP_001191870.1|	-	0.0016	17.9	0.0	0.0076	15.7	0.0	1.9	2	0	0	2	2	2	1	SRP54-type	protein,	GTPase	domain
ArsA_ATPase	PF02374.10	gi|146304554|ref|YP_001191870.1|	-	0.0036	16.4	0.0	0.0055	15.7	0.0	1.2	1	0	0	1	1	1	1	Anion-transporting	ATPase
AAA_10	PF12846.2	gi|146304554|ref|YP_001191870.1|	-	0.0049	16.3	0.0	0.009	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA-like	domain
NTPase_1	PF03266.10	gi|146304554|ref|YP_001191870.1|	-	0.0049	16.5	0.0	0.009	15.7	0.0	1.4	1	0	0	1	1	1	1	NTPase
AAA_30	PF13604.1	gi|146304554|ref|YP_001191870.1|	-	0.0053	16.3	0.0	0.0087	15.6	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_24	PF13479.1	gi|146304554|ref|YP_001191870.1|	-	0.021	14.4	0.0	0.044	13.3	0.0	1.5	2	0	0	2	2	1	0	AAA	domain
AAA_14	PF13173.1	gi|146304554|ref|YP_001191870.1|	-	0.031	14.1	0.0	0.057	13.3	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
NACHT	PF05729.7	gi|146304554|ref|YP_001191870.1|	-	0.048	13.3	0.0	0.09	12.4	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_22	PF13401.1	gi|146304554|ref|YP_001191870.1|	-	0.05	13.7	0.0	0.17	12.0	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|146304554|ref|YP_001191870.1|	-	0.054	12.9	0.0	0.9	9.0	0.0	2.5	3	1	0	3	3	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
AAA_29	PF13555.1	gi|146304554|ref|YP_001191870.1|	-	0.056	12.9	0.0	0.22	11.0	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
FeoB_N	PF02421.13	gi|146304554|ref|YP_001191870.1|	-	0.062	12.5	0.1	4.8	6.4	0.0	2.9	3	1	0	3	3	3	0	Ferrous	iron	transport	protein	B
AAA_28	PF13521.1	gi|146304554|ref|YP_001191870.1|	-	0.077	12.9	0.0	0.13	12.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
UPF0079	PF02367.12	gi|146304554|ref|YP_001191870.1|	-	0.09	12.4	0.1	0.26	10.9	0.0	1.7	2	0	0	2	2	2	0	Uncharacterised	P-loop	hydrolase	UPF0079
Viral_helicase1	PF01443.13	gi|146304554|ref|YP_001191870.1|	-	0.1	12.1	0.0	0.3	10.5	0.0	1.7	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
KAP_NTPase	PF07693.9	gi|146304554|ref|YP_001191870.1|	-	0.12	11.3	0.0	0.18	10.7	0.0	1.3	1	0	0	1	1	1	0	KAP	family	P-loop	domain
DUF258	PF03193.11	gi|146304554|ref|YP_001191870.1|	-	0.14	11.3	0.0	0.61	9.2	0.0	2.0	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF258
TrwB_AAD_bind	PF10412.4	gi|146304554|ref|YP_001191870.1|	-	0.15	10.6	0.0	0.22	10.0	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
RNA_helicase	PF00910.17	gi|146304554|ref|YP_001191870.1|	-	0.15	12.2	0.0	0.31	11.2	0.0	1.5	1	0	0	1	1	1	0	RNA	helicase
G-alpha	PF00503.15	gi|146304554|ref|YP_001191870.1|	-	0.17	10.5	0.0	0.26	9.9	0.0	1.2	1	0	0	1	1	1	0	G-protein	alpha	subunit
PCNA_C	PF02747.10	gi|146304555|ref|YP_001191871.1|	-	8.4e-12	45.1	0.0	6.8e-10	38.9	0.0	2.8	2	2	1	3	3	3	1	Proliferating	cell	nuclear	antigen,	C-terminal	domain
PCNA_N	PF00705.13	gi|146304555|ref|YP_001191871.1|	-	5.8e-07	29.0	0.0	1.7e-06	27.5	0.0	1.7	3	0	0	3	3	3	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
Rad1	PF02144.11	gi|146304555|ref|YP_001191871.1|	-	7.5e-06	24.9	0.0	0.0055	15.5	0.0	2.1	1	1	0	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
DNA_primase_S	PF01896.14	gi|146304556|ref|YP_001191872.1|	-	1.9e-13	50.4	0.1	1.2e-12	47.9	0.1	2.1	1	1	0	1	1	1	1	Eukaryotic	and	archaeal	DNA	primase	small	subunit
Nudix_N_2	PF14803.1	gi|146304556|ref|YP_001191872.1|	-	0.044	13.4	0.9	0.09	12.4	0.6	1.5	1	0	0	1	1	1	0	Nudix	N-terminal
DUF1272	PF06906.6	gi|146304556|ref|YP_001191872.1|	-	0.078	12.8	0.2	0.14	11.9	0.2	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
HEPN	PF05168.9	gi|146304559|ref|YP_001191875.1|	-	0.0082	16.0	0.6	0.01	15.6	0.4	1.3	1	1	0	1	1	1	1	HEPN	domain
DUF2089	PF09862.4	gi|146304559|ref|YP_001191875.1|	-	0.035	13.8	0.1	0.075	12.8	0.1	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF2089)
Pkinase	PF00069.20	gi|146304560|ref|YP_001191876.1|	-	4.4e-24	85.0	0.0	6.1e-24	84.5	0.0	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Pkinase_Tyr	PF07714.12	gi|146304560|ref|YP_001191876.1|	-	1.5e-07	30.7	0.0	2.8e-07	29.8	0.0	1.5	1	1	0	1	1	1	1	Protein	tyrosine	kinase
DUF1839	PF08893.5	gi|146304560|ref|YP_001191876.1|	-	0.041	12.8	0.0	0.063	12.2	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF1839)
Phage-tail_2	PF09096.5	gi|146304561|ref|YP_001191877.1|	-	0.091	12.3	0.4	0.17	11.5	0.2	1.5	1	1	0	1	1	1	0	Baseplate	structural	protein,	domain	2
OCD_Mu_crystall	PF02423.10	gi|146304562|ref|YP_001191878.1|	-	1.5e-40	138.9	0.3	1.8e-40	138.6	0.2	1.1	1	0	0	1	1	1	1	Ornithine	cyclodeaminase/mu-crystallin	family
Shikimate_DH	PF01488.15	gi|146304562|ref|YP_001191878.1|	-	0.0001	22.3	0.0	0.00015	21.8	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|146304562|ref|YP_001191878.1|	-	0.00029	20.0	0.0	0.00049	19.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|146304562|ref|YP_001191878.1|	-	0.013	15.9	0.0	0.038	14.4	0.0	1.7	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
Nop10p	PF04135.7	gi|146304563|ref|YP_001191879.1|	-	1.8e-23	81.9	1.1	2.1e-23	81.7	0.8	1.0	1	0	0	1	1	1	1	Nucleolar	RNA-binding	protein,	Nop10p	family
zf-NADH-PPase	PF09297.6	gi|146304563|ref|YP_001191879.1|	-	0.02	14.4	0.7	0.02	14.4	0.5	2.1	3	0	0	3	3	3	0	NADH	pyrophosphatase	zinc	ribbon	domain
DUF1272	PF06906.6	gi|146304563|ref|YP_001191879.1|	-	0.049	13.4	0.4	0.063	13.1	0.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1272)
Prim_Zn_Ribbon	PF08273.7	gi|146304563|ref|YP_001191879.1|	-	0.086	12.9	0.4	0.16	12.0	0.3	1.5	1	0	0	1	1	1	0	Zinc-binding	domain	of	primase-helicase
EIF_2_alpha	PF07541.7	gi|146304564|ref|YP_001191880.1|	-	4.2e-25	87.6	0.5	8.8e-25	86.6	0.0	1.8	2	0	0	2	2	2	1	Eukaryotic	translation	initiation	factor	2	alpha	subunit
S1	PF00575.18	gi|146304564|ref|YP_001191880.1|	-	7.2e-15	54.8	1.5	1.3e-14	53.9	0.1	2.1	2	0	0	2	2	2	1	S1	RNA	binding	domain
Paf67	PF10255.4	gi|146304564|ref|YP_001191880.1|	-	0.031	13.1	0.1	0.039	12.8	0.1	1.1	1	0	0	1	1	1	0	RNA	polymerase	I-associated	factor	PAF67
DELLA	PF12041.3	gi|146304564|ref|YP_001191880.1|	-	0.11	12.1	0.5	1	9.0	0.0	2.3	2	0	0	2	2	2	0	Transcriptional	regulator	DELLA	protein	N	terminal
Ribosomal_S27e	PF01667.12	gi|146304565|ref|YP_001191881.1|	-	8.2e-19	66.9	0.5	9.2e-19	66.7	0.3	1.1	1	0	0	1	1	1	1	Ribosomal	protein	S27
zinc_ribbon_5	PF13719.1	gi|146304565|ref|YP_001191881.1|	-	0.013	15.0	0.6	0.27	10.8	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|146304565|ref|YP_001191881.1|	-	0.014	15.1	0.8	0.24	11.0	0.1	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ribbon_3	PF13248.1	gi|146304565|ref|YP_001191881.1|	-	0.015	14.4	1.3	3	7.1	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
TF_Zn_Ribbon	PF08271.7	gi|146304565|ref|YP_001191881.1|	-	0.026	13.8	0.6	0.035	13.4	0.4	1.2	1	0	0	1	1	1	0	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|146304565|ref|YP_001191881.1|	-	0.031	13.7	0.4	0.82	9.2	0.2	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
DUF35_N	PF12172.3	gi|146304565|ref|YP_001191881.1|	-	0.033	14.1	1.9	0.12	12.2	0.2	2.1	2	0	0	2	2	2	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
HypA	PF01155.14	gi|146304565|ref|YP_001191881.1|	-	0.04	13.5	0.3	0.049	13.3	0.2	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
Zn-ribbon_8	PF09723.5	gi|146304565|ref|YP_001191881.1|	-	0.073	13.0	0.5	0.12	12.3	0.4	1.3	1	0	0	1	1	1	0	Zinc	ribbon	domain
DNA_RNApol_7kD	PF03604.8	gi|146304565|ref|YP_001191881.1|	-	0.091	12.2	1.4	0.29	10.6	0.9	1.8	1	1	0	1	1	1	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
FdhE	PF04216.7	gi|146304565|ref|YP_001191881.1|	-	0.1	12.3	0.9	0.1	12.3	0.6	1.5	1	1	1	2	2	2	0	Protein	involved	in	formate	dehydrogenase	formation
DUF4206	PF13901.1	gi|146304565|ref|YP_001191881.1|	-	0.12	11.8	1.0	0.15	11.6	0.7	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4206)
PADR1	PF08063.7	gi|146304565|ref|YP_001191881.1|	-	0.13	11.7	1.9	0.28	10.6	0.5	1.8	1	1	1	2	2	2	0	PADR1	(NUC008)	domain
zf-LSD1	PF06943.7	gi|146304565|ref|YP_001191881.1|	-	0.17	11.4	7.3	0.94	9.1	0.5	2.2	2	0	0	2	2	2	0	LSD1	zinc	finger
DNA_ligase_ZBD	PF03119.11	gi|146304565|ref|YP_001191881.1|	-	0.23	11.1	1.7	0.8	9.4	0.0	2.2	2	0	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zinc_ribbon_2	PF13240.1	gi|146304565|ref|YP_001191881.1|	-	0.37	10.3	5.0	3.4	7.2	3.4	2.1	1	1	0	1	1	1	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|146304565|ref|YP_001191881.1|	-	0.37	10.4	4.4	2.1	8.0	0.6	2.2	1	1	2	3	3	3	0	Transcription	factor	S-II	(TFIIS)
DUF3797	PF12677.2	gi|146304565|ref|YP_001191881.1|	-	0.69	9.5	3.7	3.7	7.2	1.1	2.1	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF3797)
Ribosomal_L44	PF00935.14	gi|146304566|ref|YP_001191882.1|	-	8.5e-29	99.3	5.4	8.5e-29	99.3	3.7	1.4	1	1	1	2	2	2	1	Ribosomal	protein	L44
Zn-ribbon_8	PF09723.5	gi|146304566|ref|YP_001191882.1|	-	0.011	15.6	1.2	0.63	10.0	0.1	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf-PHD-like	PF15446.1	gi|146304566|ref|YP_001191882.1|	-	0.024	13.9	0.1	0.03	13.6	0.1	1.1	1	0	0	1	1	1	0	PHD/FYVE-zinc-finger	like	domain
zf-UBR	PF02207.15	gi|146304566|ref|YP_001191882.1|	-	0.033	13.8	1.5	4.3	7.1	0.1	2.1	2	0	0	2	2	2	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
zinc_ribbon_4	PF13717.1	gi|146304566|ref|YP_001191882.1|	-	0.036	13.7	2.6	2.2	8.0	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
TFIIS_C	PF01096.13	gi|146304566|ref|YP_001191882.1|	-	0.041	13.5	5.2	0.23	11.1	0.6	2.2	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
NOB1_Zn_bind	PF08772.6	gi|146304566|ref|YP_001191882.1|	-	0.044	13.5	1.6	1.9	8.3	0.1	2.2	2	0	0	2	2	2	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
DZR	PF12773.2	gi|146304566|ref|YP_001191882.1|	-	0.047	13.5	3.3	0.13	12.0	2.3	1.7	1	1	0	1	1	1	0	Double	zinc	ribbon
PyrI_C	PF02748.10	gi|146304566|ref|YP_001191882.1|	-	0.05	13.0	0.6	0.13	11.7	0.0	1.8	2	0	0	2	2	2	0	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
DUF3449	PF11931.3	gi|146304566|ref|YP_001191882.1|	-	0.052	13.0	0.1	0.057	12.9	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3449)
CpXC	PF14353.1	gi|146304566|ref|YP_001191882.1|	-	0.059	13.3	0.8	1.7	8.6	0.0	2.1	2	0	0	2	2	2	0	CpXC	protein
DUF2387	PF09526.5	gi|146304566|ref|YP_001191882.1|	-	0.063	13.1	0.1	7.4	6.5	0.0	2.3	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
zinc_ribbon_5	PF13719.1	gi|146304566|ref|YP_001191882.1|	-	0.071	12.6	3.1	2.8	7.6	0.1	2.5	2	0	0	2	2	2	0	zinc-ribbon	domain
DUF2082	PF09855.4	gi|146304566|ref|YP_001191882.1|	-	0.082	12.7	1.6	1.1	9.1	0.1	2.2	2	0	0	2	2	2	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
Zn_Tnp_IS1595	PF12760.2	gi|146304566|ref|YP_001191882.1|	-	0.1	12.4	0.7	12	5.7	0.0	2.2	2	0	0	2	2	2	0	Transposase	zinc-ribbon	domain
Rubredoxin	PF00301.15	gi|146304566|ref|YP_001191882.1|	-	0.11	12.4	2.8	1	9.2	0.2	2.3	2	0	0	2	2	2	0	Rubredoxin
zf-Mss51	PF13824.1	gi|146304566|ref|YP_001191882.1|	-	0.15	11.9	2.2	2.1	8.2	1.8	2.1	1	1	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
Mu-like_Com	PF10122.4	gi|146304566|ref|YP_001191882.1|	-	0.17	10.9	1.1	6.6	5.8	0.1	2.2	2	0	0	2	2	2	0	Mu-like	prophage	protein	Com
RNA_POL_M_15KD	PF02150.11	gi|146304566|ref|YP_001191882.1|	-	0.22	11.2	1.8	3.2	7.5	0.1	2.2	2	0	0	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-ribbon_3	PF13248.1	gi|146304566|ref|YP_001191882.1|	-	0.25	10.6	2.8	7.2	5.9	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Tnp_zf-ribbon_2	PF13842.1	gi|146304566|ref|YP_001191882.1|	-	0.28	11.6	3.4	3.1	8.2	0.3	2.3	2	0	0	2	2	2	0	DDE_Tnp_1-like	zinc-ribbon
zf-AN1	PF01428.11	gi|146304566|ref|YP_001191882.1|	-	0.3	11.0	4.0	0.58	10.0	0.5	2.1	2	0	0	2	2	2	0	AN1-like	Zinc	finger
zinc_ribbon_2	PF13240.1	gi|146304566|ref|YP_001191882.1|	-	0.33	10.5	7.6	2.2	7.8	0.6	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|146304566|ref|YP_001191882.1|	-	0.33	11.3	6.0	0.92	9.9	0.4	2.5	2	0	0	2	2	2	0	Zinc	finger,	C2H2	type
zf-H2C2_2	PF13465.1	gi|146304566|ref|YP_001191882.1|	-	0.62	10.4	8.6	0.36	11.1	1.2	2.5	2	0	0	2	2	2	0	Zinc-finger	double	domain
OrfB_Zn_ribbon	PF07282.6	gi|146304566|ref|YP_001191882.1|	-	1.7	8.3	5.6	2.3	7.9	0.2	2.7	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-C2H2_4	PF13894.1	gi|146304566|ref|YP_001191882.1|	-	2.2	8.7	4.8	6.3	7.3	0.1	2.4	2	1	0	2	2	2	0	C2H2-type	zinc	finger
STT3	PF02516.9	gi|146304567|ref|YP_001191883.1|	-	6.8e-16	58.2	38.0	1.2e-15	57.4	26.3	1.3	1	0	0	1	1	1	1	Oligosaccharyl	transferase	STT3	subunit
Reeler	PF02014.11	gi|146304568|ref|YP_001191884.1|	-	0.013	15.7	0.1	0.077	13.2	0.0	2.4	2	0	0	2	2	2	0	Reeler	domain
CarboxypepD_reg	PF13620.1	gi|146304569|ref|YP_001191885.1|	-	5.6e-14	51.9	22.1	2.7e-09	36.9	2.7	4.0	2	1	1	3	3	3	3	Carboxypeptidase	regulatory-like	domain
A2M_N	PF01835.14	gi|146304569|ref|YP_001191885.1|	-	1.9e-09	37.6	2.6	1.7e-07	31.4	0.6	2.8	1	1	1	2	2	2	1	MG2	domain
DUF4480	PF13715.1	gi|146304569|ref|YP_001191885.1|	-	3.5e-08	33.3	10.5	0.0031	17.5	0.5	3.7	3	1	0	3	3	3	2	Domain	of	unknown	function	(DUF4480)
Reo_sigmaC	PF04582.7	gi|146304569|ref|YP_001191885.1|	-	1.5e-06	27.6	15.6	3.1e-06	26.6	10.8	1.5	1	0	0	1	1	1	1	Reovirus	sigma	C	capsid	protein
TMF_DNA_bd	PF12329.3	gi|146304569|ref|YP_001191885.1|	-	2e-06	27.4	0.8	0.023	14.5	0.1	2.0	1	1	0	1	1	1	1	TATA	element	modulatory	factor	1	DNA	binding
Cna_B	PF05738.8	gi|146304569|ref|YP_001191885.1|	-	6e-05	22.7	16.1	0.004	16.8	0.5	3.3	3	0	0	3	3	3	2	Cna	protein	B-type	domain
FlaC_arch	PF05377.6	gi|146304569|ref|YP_001191885.1|	-	8.6e-05	22.3	2.3	0.0014	18.4	0.4	2.4	1	1	1	2	2	2	1	Flagella	accessory	protein	C	(FlaC)
IncA	PF04156.9	gi|146304569|ref|YP_001191885.1|	-	8.8e-05	22.1	0.5	8.8e-05	22.1	0.3	2.3	1	1	1	2	2	1	1	IncA	protein
TMF_TATA_bd	PF12325.3	gi|146304569|ref|YP_001191885.1|	-	0.00014	21.5	1.1	0.00045	19.9	0.7	1.7	1	1	0	1	1	1	1	TATA	element	modulatory	factor	1	TATA	binding
ADIP	PF11559.3	gi|146304569|ref|YP_001191885.1|	-	0.00024	21.0	0.2	0.00037	20.4	0.1	1.2	1	0	0	1	1	1	1	Afadin-	and	alpha	-actinin-Binding
Laminin_II	PF06009.7	gi|146304569|ref|YP_001191885.1|	-	0.00028	20.6	1.6	0.00048	19.8	1.1	1.3	1	0	0	1	1	1	1	Laminin	Domain	II
ATG16	PF08614.6	gi|146304569|ref|YP_001191885.1|	-	0.00036	20.4	0.0	0.00054	19.8	0.0	1.2	1	0	0	1	1	1	1	Autophagy	protein	16	(ATG16)
DUF948	PF06103.6	gi|146304569|ref|YP_001191885.1|	-	0.00046	19.9	8.7	0.0029	17.4	2.2	3.3	2	1	1	3	3	2	2	Bacterial	protein	of	unknown	function	(DUF948)
FlgD_ig	PF13860.1	gi|146304569|ref|YP_001191885.1|	-	0.00052	19.6	1.8	0.085	12.6	0.1	3.2	2	1	0	3	3	2	1	FlgD	Ig-like	domain
SlyX	PF04102.7	gi|146304569|ref|YP_001191885.1|	-	0.00065	20.0	0.0	0.014	15.7	0.0	2.3	1	1	1	2	2	2	2	SlyX
DoxA	PF07680.6	gi|146304569|ref|YP_001191885.1|	-	0.00096	18.7	0.5	19	4.8	0.0	3.7	2	1	0	3	3	3	0	TQO	small	subunit	DoxA
COG5	PF10392.4	gi|146304569|ref|YP_001191885.1|	-	0.00098	19.0	7.8	0.0053	16.7	5.3	2.0	1	1	0	1	1	1	1	Golgi	transport	complex	subunit	5
LPP	PF04728.8	gi|146304569|ref|YP_001191885.1|	-	0.0015	18.2	8.3	0.049	13.4	1.8	2.8	1	1	2	3	3	3	2	Lipoprotein	leucine-zipper
BLOC1_2	PF10046.4	gi|146304569|ref|YP_001191885.1|	-	0.0022	18.1	0.7	0.017	15.2	0.7	2.0	1	1	1	2	2	2	1	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
PEGA	PF08308.6	gi|146304569|ref|YP_001191885.1|	-	0.0034	17.1	0.2	0.0034	17.1	0.1	2.9	4	1	0	4	4	2	1	PEGA	domain
Vps5	PF09325.5	gi|146304569|ref|YP_001191885.1|	-	0.0044	16.3	1.6	0.0062	15.8	1.1	1.1	1	0	0	1	1	1	1	Vps5	C	terminal	like
DUF1664	PF07889.7	gi|146304569|ref|YP_001191885.1|	-	0.0049	16.6	0.1	0.0088	15.8	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1664)
ATP-synt_D	PF01813.12	gi|146304569|ref|YP_001191885.1|	-	0.0052	16.3	0.7	0.011	15.3	0.5	1.4	1	0	0	1	1	1	1	ATP	synthase	subunit	D
DivIC	PF04977.10	gi|146304569|ref|YP_001191885.1|	-	0.0064	15.9	0.0	2	7.9	0.0	2.5	2	1	1	3	3	2	1	Septum	formation	initiator
Vps51	PF08700.6	gi|146304569|ref|YP_001191885.1|	-	0.0081	15.9	3.5	0.34	10.7	0.5	2.3	1	1	0	2	2	2	1	Vps51/Vps67
NPV_P10	PF05531.7	gi|146304569|ref|YP_001191885.1|	-	0.0095	16.1	1.9	0.077	13.2	1.3	2.3	1	1	0	1	1	1	1	Nucleopolyhedrovirus	P10	protein
TBPIP	PF07106.8	gi|146304569|ref|YP_001191885.1|	-	0.013	15.0	0.3	0.034	13.7	0.2	1.6	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DUF869	PF05911.6	gi|146304569|ref|YP_001191885.1|	-	0.014	13.6	0.6	0.019	13.2	0.4	1.1	1	0	0	1	1	1	0	Plant	protein	of	unknown	function	(DUF869)
bZIP_1	PF00170.16	gi|146304569|ref|YP_001191885.1|	-	0.018	14.9	0.1	2.5	8.1	0.0	2.3	1	1	1	2	2	2	0	bZIP	transcription	factor
Laminin_I	PF06008.9	gi|146304569|ref|YP_001191885.1|	-	0.018	14.3	0.5	0.027	13.7	0.4	1.1	1	0	0	1	1	1	0	Laminin	Domain	I
DUF812	PF05667.6	gi|146304569|ref|YP_001191885.1|	-	0.019	13.4	0.0	0.028	12.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
CENP-F_leu_zip	PF10473.4	gi|146304569|ref|YP_001191885.1|	-	0.024	14.5	0.2	0.041	13.7	0.1	1.3	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Atg14	PF10186.4	gi|146304569|ref|YP_001191885.1|	-	0.03	13.2	0.1	0.045	12.7	0.1	1.1	1	0	0	1	1	1	0	UV	radiation	resistance	protein	and	autophagy-related	subunit	14
AAA_13	PF13166.1	gi|146304569|ref|YP_001191885.1|	-	0.038	12.4	0.0	0.05	12.0	0.0	1.1	1	0	0	1	1	1	0	AAA	domain
Mitofilin	PF09731.4	gi|146304569|ref|YP_001191885.1|	-	0.041	12.5	0.9	0.064	11.9	0.6	1.3	1	0	0	1	1	1	0	Mitochondrial	inner	membrane	protein
Cep57_MT_bd	PF06657.8	gi|146304569|ref|YP_001191885.1|	-	0.044	13.7	0.1	1.5	8.8	0.0	2.2	1	1	1	2	2	2	0	Centrosome	microtubule-binding	domain	of	Cep57
DUF4140	PF13600.1	gi|146304569|ref|YP_001191885.1|	-	0.051	14.0	2.4	2.3	8.6	0.1	3.5	2	2	1	3	3	3	0	N-terminal	domain	of	unknown	function	(DUF4140)
Spc7	PF08317.6	gi|146304569|ref|YP_001191885.1|	-	0.061	11.9	0.0	0.1	11.2	0.0	1.3	1	0	0	1	1	1	0	Spc7	kinetochore	protein
MIS13	PF08202.6	gi|146304569|ref|YP_001191885.1|	-	0.061	12.3	1.2	0.2	10.6	0.8	1.7	1	1	0	1	1	1	0	Mis12-Mtw1	protein	family
Y_Y_Y	PF07495.8	gi|146304569|ref|YP_001191885.1|	-	0.07	12.8	1.3	0.95	9.2	0.0	3.2	3	0	0	3	3	3	0	Y_Y_Y	domain
Mesd	PF10185.4	gi|146304569|ref|YP_001191885.1|	-	0.075	12.7	0.1	0.12	12.0	0.0	1.2	1	0	0	1	1	1	0	Chaperone	for	wingless	signalling	and	trafficking	of	LDL	receptor
Myosin_tail_1	PF01576.14	gi|146304569|ref|YP_001191885.1|	-	0.095	10.4	0.0	0.14	9.8	0.0	1.1	1	0	0	1	1	1	0	Myosin	tail
Filament	PF00038.16	gi|146304569|ref|YP_001191885.1|	-	0.1	12.0	0.1	0.15	11.5	0.1	1.1	1	0	0	1	1	1	0	Intermediate	filament	protein
MCPsignal	PF00015.16	gi|146304569|ref|YP_001191885.1|	-	0.12	11.8	6.2	0.22	11.0	4.3	1.3	1	0	0	1	1	1	0	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
DUF972	PF06156.8	gi|146304569|ref|YP_001191885.1|	-	0.13	12.6	0.1	0.42	10.9	0.0	1.8	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF972)
DASH_Duo1	PF08651.5	gi|146304569|ref|YP_001191885.1|	-	0.16	11.5	2.2	3.5	7.2	0.4	2.5	1	1	1	2	2	2	0	DASH	complex	subunit	Duo1
Dynamitin	PF04912.9	gi|146304569|ref|YP_001191885.1|	-	0.2	10.4	2.5	0.27	10.0	1.7	1.1	1	0	0	1	1	1	0	Dynamitin
Fib_alpha	PF08702.5	gi|146304569|ref|YP_001191885.1|	-	0.23	11.5	1.7	0.83	9.7	0.9	1.9	1	1	0	1	1	1	0	Fibrinogen	alpha/beta	chain	family
Bacillus_HBL	PF05791.6	gi|146304569|ref|YP_001191885.1|	-	0.25	10.7	3.3	0.94	8.8	2.1	2.0	1	1	1	2	2	2	0	Bacillus	haemolytic	enterotoxin	(HBL)
EzrA	PF06160.7	gi|146304569|ref|YP_001191885.1|	-	0.27	9.3	0.0	0.27	9.3	0.0	1.5	2	0	0	2	2	1	0	Septation	ring	formation	regulator,	EzrA
Syntaxin-6_N	PF09177.6	gi|146304569|ref|YP_001191885.1|	-	0.31	11.4	1.3	1.5	9.2	0.9	2.0	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
Baculo_PEP_C	PF04513.7	gi|146304569|ref|YP_001191885.1|	-	0.33	10.7	21.7	0.039	13.7	10.5	2.4	2	1	0	2	2	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
NTR2	PF15458.1	gi|146304569|ref|YP_001191885.1|	-	0.34	10.1	0.8	1.5	8.0	0.6	1.8	1	1	0	1	1	1	0	Nineteen	complex-related	protein	2
MscS_porin	PF12795.2	gi|146304569|ref|YP_001191885.1|	-	0.54	9.5	3.1	0.89	8.8	2.2	1.2	1	0	0	1	1	1	0	Mechanosensitive	ion	channel	porin	domain
Syntaxin_2	PF14523.1	gi|146304569|ref|YP_001191885.1|	-	0.69	9.9	4.0	3.3	7.7	2.6	2.0	1	1	0	1	1	1	0	Syntaxin-like	protein
EMP24_GP25L	PF01105.19	gi|146304569|ref|YP_001191885.1|	-	0.74	9.5	5.3	4.4	6.9	3.7	2.6	1	1	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
MbeD_MobD	PF04899.7	gi|146304569|ref|YP_001191885.1|	-	3.4	7.6	11.8	3.9	7.4	3.1	3.3	2	1	1	3	3	2	0	MbeD/MobD	like
Rifin_STEVOR	PF02009.11	gi|146304569|ref|YP_001191885.1|	-	4.1	6.9	7.8	6	6.4	5.4	1.3	1	0	0	1	1	1	0	Rifin/stevor	family
GP41	PF00517.12	gi|146304569|ref|YP_001191885.1|	-	9.4	5.7	8.5	2.6	7.5	0.3	2.6	1	1	2	3	3	3	0	Retroviral	envelope	protein
Glycos_transf_1	PF00534.15	gi|146304570|ref|YP_001191886.1|	-	2.7e-21	75.7	0.0	6.2e-21	74.5	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304570|ref|YP_001191886.1|	-	4.2e-14	52.8	0.0	7.2e-14	52.0	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146304570|ref|YP_001191886.1|	-	0.0044	17.2	0.0	0.017	15.3	0.0	2.0	1	1	0	1	1	1	1	Glycosyl	transferases	group	1
ING	PF12998.2	gi|146304570|ref|YP_001191886.1|	-	0.19	12.0	1.9	2.4	8.4	0.1	2.9	3	0	0	3	3	3	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Epimerase	PF01370.16	gi|146304571|ref|YP_001191887.1|	-	2.4e-45	154.8	0.0	2.8e-45	154.5	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|146304571|ref|YP_001191887.1|	-	2.5e-10	39.7	0.0	3.1e-10	39.4	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
NAD_binding_4	PF07993.7	gi|146304571|ref|YP_001191887.1|	-	3.3e-10	39.3	0.1	1.4e-07	30.6	0.0	2.2	1	1	0	2	2	2	2	Male	sterility	protein
3Beta_HSD	PF01073.14	gi|146304571|ref|YP_001191887.1|	-	1.7e-07	30.2	0.0	3.1e-06	26.0	0.0	2.1	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.10	gi|146304571|ref|YP_001191887.1|	-	8.4e-07	28.1	0.1	0.00084	18.3	0.0	2.6	3	0	0	3	3	3	2	Polysaccharide	biosynthesis	protein
Epimerase_Csub	PF13950.1	gi|146304571|ref|YP_001191887.1|	-	0.0041	17.0	0.0	0.0092	15.9	0.0	1.6	1	0	0	1	1	1	1	UDP-glucose	4-epimerase	C-term	subunit
UDPG_MGDP_dh_N	PF03721.9	gi|146304572|ref|YP_001191888.1|	-	5.4e-50	169.3	0.1	9.3e-50	168.5	0.1	1.4	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
UDPG_MGDP_dh	PF00984.14	gi|146304572|ref|YP_001191888.1|	-	7.8e-33	112.5	0.0	1.3e-32	111.8	0.0	1.3	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	central	domain
UDPG_MGDP_dh_C	PF03720.10	gi|146304572|ref|YP_001191888.1|	-	3.7e-25	88.1	0.0	2.5e-24	85.4	0.0	2.4	3	0	0	3	3	3	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	UDP	binding	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146304572|ref|YP_001191888.1|	-	3.6e-06	26.7	0.1	0.0052	16.5	0.0	2.9	2	1	0	2	2	2	2	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
2-Hacid_dh_C	PF02826.14	gi|146304572|ref|YP_001191888.1|	-	5.1e-05	22.4	0.4	0.11	11.6	0.0	2.7	2	1	0	2	2	2	2	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|146304572|ref|YP_001191888.1|	-	0.00014	21.6	0.0	0.00046	19.8	0.0	1.9	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|146304572|ref|YP_001191888.1|	-	0.00021	21.6	3.7	2.5	8.5	0.3	4.3	3	1	1	4	4	4	2	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|146304572|ref|YP_001191888.1|	-	0.00057	19.3	0.0	0.0011	18.4	0.0	1.5	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_2	PF03446.10	gi|146304572|ref|YP_001191888.1|	-	0.0098	15.7	0.1	0.022	14.5	0.1	1.7	1	1	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
TrkA_N	PF02254.13	gi|146304572|ref|YP_001191888.1|	-	0.016	15.1	5.8	0.27	11.2	0.1	3.5	4	1	0	4	4	4	0	TrkA-N	domain
SAM_MT	PF04445.8	gi|146304572|ref|YP_001191888.1|	-	0.025	13.7	0.0	0.04	13.0	0.0	1.2	1	0	0	1	1	1	0	Putative	SAM-dependent	methyltransferase
FAD_binding_3	PF01494.14	gi|146304572|ref|YP_001191888.1|	-	0.14	11.1	0.1	0.24	10.4	0.0	1.4	1	0	0	1	1	1	0	FAD	binding	domain
DAO	PF01266.19	gi|146304572|ref|YP_001191888.1|	-	0.26	10.1	6.5	0.22	10.3	3.3	1.8	2	0	0	2	2	2	0	FAD	dependent	oxidoreductase
NTP_transferase	PF00483.18	gi|146304573|ref|YP_001191889.1|	-	3e-20	72.5	0.0	1.8e-19	70.0	0.0	2.0	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146304573|ref|YP_001191889.1|	-	1.4e-05	25.2	0.0	2e-05	24.7	0.0	1.4	1	1	0	1	1	1	1	MobA-like	NTP	transferase	domain
mRNA_cap_enzyme	PF01331.14	gi|146304573|ref|YP_001191889.1|	-	0.092	12.4	0.0	0.15	11.7	0.0	1.4	1	0	0	1	1	1	0	mRNA	capping	enzyme,	catalytic	domain
Glycos_transf_2	PF00535.21	gi|146304574|ref|YP_001191890.1|	-	0.088	12.4	0.0	0.24	11.0	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.15	gi|146304576|ref|YP_001191892.1|	-	5.2e-21	74.8	0.0	1.1e-20	73.7	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304576|ref|YP_001191892.1|	-	1.3e-08	35.0	0.0	2.5e-08	34.1	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|146304576|ref|YP_001191892.1|	-	0.0005	19.8	0.0	0.0021	17.7	0.0	1.9	1	1	0	1	1	1	1	Glycosyltransferase	Family	4
Big_2	PF02368.13	gi|146304577|ref|YP_001191893.1|	-	0.14	12.0	2.0	0.44	10.4	1.4	1.9	1	0	0	1	1	1	0	Bacterial	Ig-like	domain	(group	2)
Glycos_transf_2	PF00535.21	gi|146304578|ref|YP_001191894.1|	-	4.7e-26	91.4	0.0	5.5e-26	91.2	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|146304578|ref|YP_001191894.1|	-	1e-12	48.4	0.1	1.3e-12	48.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
NTP_transf_3	PF12804.2	gi|146304578|ref|YP_001191894.1|	-	1.3e-05	25.3	0.0	1.6e-05	25.0	0.0	1.1	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Glyco_transf_21	PF13506.1	gi|146304578|ref|YP_001191894.1|	-	0.0017	17.6	0.0	0.0025	17.1	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|146304578|ref|YP_001191894.1|	-	0.014	14.5	0.0	0.024	13.6	0.0	1.4	1	1	0	1	1	1	0	Glycosyltransferase	like	family	2
Glyco_tranf_2_4	PF13704.1	gi|146304578|ref|YP_001191894.1|	-	0.055	13.7	0.0	0.14	12.4	0.0	1.7	1	0	0	1	1	1	0	Glycosyl	transferase	family	2
Apolipoprotein	PF01442.13	gi|146304579|ref|YP_001191895.1|	-	7.7e-11	41.8	1.7	5.9e-06	25.9	0.2	2.1	1	1	1	2	2	2	2	Apolipoprotein	A1/A4/E	domain
DUF883	PF05957.8	gi|146304579|ref|YP_001191895.1|	-	5e-05	23.6	6.3	0.35	11.3	0.5	3.2	1	1	3	4	4	4	3	Bacterial	protein	of	unknown	function	(DUF883)
TPR_MLP1_2	PF07926.7	gi|146304579|ref|YP_001191895.1|	-	5.1e-05	23.0	0.0	0.00023	20.9	0.0	1.9	1	1	0	1	1	1	1	TPR/MLP1/MLP2-like	protein
DUF3584	PF12128.3	gi|146304579|ref|YP_001191895.1|	-	0.00044	17.7	7.4	0.017	12.5	0.4	2.0	1	1	1	2	2	2	2	Protein	of	unknown	function	(DUF3584)
SF-assemblin	PF06705.6	gi|146304579|ref|YP_001191895.1|	-	0.00068	18.8	12.8	0.0011	18.2	3.9	2.1	1	1	1	2	2	2	1	SF-assemblin/beta	giardin
Baculo_PEP_C	PF04513.7	gi|146304579|ref|YP_001191895.1|	-	0.0021	17.8	0.0	0.64	9.8	0.0	2.5	2	1	0	2	2	2	1	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Syntaxin-6_N	PF09177.6	gi|146304579|ref|YP_001191895.1|	-	0.0025	18.1	6.8	0.035	14.4	0.1	3.1	2	1	1	3	3	3	1	Syntaxin	6,	N-terminal
Spectrin	PF00435.16	gi|146304579|ref|YP_001191895.1|	-	0.0031	17.7	3.9	0.15	12.3	0.2	3.4	2	2	1	3	3	3	1	Spectrin	repeat
Phasin	PF05597.6	gi|146304579|ref|YP_001191895.1|	-	0.013	15.3	11.1	0.47	10.2	0.2	3.5	1	1	2	3	3	3	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
HSBP1	PF06825.7	gi|146304579|ref|YP_001191895.1|	-	0.014	14.9	8.3	1.3	8.6	0.2	4.9	2	2	1	4	4	4	0	Heat	shock	factor	binding	protein	1
DUF1664	PF07889.7	gi|146304579|ref|YP_001191895.1|	-	0.053	13.3	8.7	0.39	10.5	0.4	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1664)
DUF948	PF06103.6	gi|146304579|ref|YP_001191895.1|	-	0.062	13.1	1.9	11	5.9	0.1	3.0	2	1	1	3	3	3	0	Bacterial	protein	of	unknown	function	(DUF948)
OmpH	PF03938.9	gi|146304579|ref|YP_001191895.1|	-	0.11	12.4	3.1	0.51	10.2	0.4	2.4	1	1	1	2	2	2	0	Outer	membrane	protein	(OmpH-like)
DUF1515	PF07439.6	gi|146304579|ref|YP_001191895.1|	-	0.13	12.0	11.2	0.54	10.1	1.0	3.3	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF1515)
DUF550	PF04447.7	gi|146304579|ref|YP_001191895.1|	-	0.32	10.6	2.3	8.4	6.0	0.0	2.9	2	1	0	3	3	3	0	Protein	of	unknown	function	(DUF550)
Prominin	PF05478.6	gi|146304579|ref|YP_001191895.1|	-	0.71	7.3	3.8	2.5	5.5	0.3	2.4	1	1	1	2	2	2	0	Prominin
ApoLp-III	PF07464.6	gi|146304579|ref|YP_001191895.1|	-	0.97	9.4	8.4	16	5.5	0.2	2.8	1	1	1	2	2	2	0	Apolipophorin-III	precursor	(apoLp-III)
YlqD	PF11068.3	gi|146304579|ref|YP_001191895.1|	-	1.1	9.3	5.7	0.84	9.6	0.3	2.7	1	1	1	2	2	2	0	YlqD	protein
Mt_ATP-synt_D	PF05873.7	gi|146304579|ref|YP_001191895.1|	-	1.1	8.8	14.1	0.81	9.3	4.3	2.3	1	1	1	2	2	2	0	ATP	synthase	D	chain,	mitochondrial	(ATP5H)
V-ATPase_G	PF03179.10	gi|146304579|ref|YP_001191895.1|	-	2.3	8.5	14.0	0.45	10.8	1.2	3.3	1	1	1	3	3	3	0	Vacuolar	(H+)-ATPase	G	subunit
Prefoldin	PF02996.12	gi|146304579|ref|YP_001191895.1|	-	2.3	7.8	9.1	3.1	7.4	0.0	3.3	3	0	0	3	3	3	0	Prefoldin	subunit
Prefoldin_2	PF01920.15	gi|146304579|ref|YP_001191895.1|	-	4.3	7.1	11.8	9.3	6.0	0.5	3.6	2	2	0	3	3	3	0	Prefoldin	subunit
DNA_primase_lrg	PF04104.9	gi|146304579|ref|YP_001191895.1|	-	4.8	6.3	10.1	1.1	8.4	0.7	2.4	1	1	2	3	3	3	0	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
DUF3313	PF11769.3	gi|146304579|ref|YP_001191895.1|	-	5.2	6.3	7.2	14	4.9	1.1	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF3313)
HTH_10	PF04967.7	gi|146304580|ref|YP_001191896.1|	-	2.3e-22	78.3	0.0	4.3e-22	77.4	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
AA_permease_2	PF13520.1	gi|146304581|ref|YP_001191897.1|	-	2.3e-30	105.4	61.4	3e-30	105.1	42.6	1.0	1	0	0	1	1	1	1	Amino	acid	permease
AA_permease	PF00324.16	gi|146304581|ref|YP_001191897.1|	-	1.8e-23	82.6	51.1	2.3e-23	82.3	35.4	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Tospo_nucleocap	PF01533.11	gi|146304581|ref|YP_001191897.1|	-	0.068	12.3	0.0	0.11	11.6	0.0	1.2	1	0	0	1	1	1	0	Tospovirus	nucleocapsid	protein
FAD_binding_4	PF01565.18	gi|146304583|ref|YP_001191899.1|	-	1.3e-27	95.9	0.0	2.4e-27	95.0	0.0	1.4	1	0	0	1	1	1	1	FAD	binding	domain
FAD-oxidase_C	PF02913.14	gi|146304583|ref|YP_001191899.1|	-	3.9e-05	23.0	0.0	7.1e-05	22.2	0.0	1.4	1	0	0	1	1	1	1	FAD	linked	oxidases,	C-terminal	domain
DUF1769	PF08588.5	gi|146304583|ref|YP_001191899.1|	-	0.041	13.8	0.0	0.72	9.8	0.0	2.5	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1769)
tRNA_NucTransf2	PF09249.6	gi|146304583|ref|YP_001191899.1|	-	0.11	12.4	2.9	0.25	11.2	0.3	2.7	3	1	0	3	3	3	0	tRNA	nucleotidyltransferase,	second	domain
DUF1177	PF06675.6	gi|146304584|ref|YP_001191900.1|	-	3.6e-105	350.5	0.0	4.4e-105	350.2	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1177)
Peptidase_M20	PF01546.23	gi|146304585|ref|YP_001191901.1|	-	6.8e-30	103.9	0.0	8.6e-30	103.6	0.0	1.1	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.9	gi|146304585|ref|YP_001191901.1|	-	5.8e-12	45.3	0.0	9.5e-12	44.6	0.0	1.3	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
IL4Ra_N	PF09238.5	gi|146304588|ref|YP_001191904.1|	-	0.049	13.7	0.0	0.12	12.5	0.0	1.5	2	0	0	2	2	2	0	Interleukin-4	receptor	alpha	chain,	N-terminal
Glycos_transf_2	PF00535.21	gi|146304589|ref|YP_001191905.1|	-	1.7e-12	47.3	1.0	2.9e-12	46.6	0.7	1.4	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.1	gi|146304589|ref|YP_001191905.1|	-	0.00058	19.7	0.0	0.00073	19.4	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glycos_transf_1	PF00534.15	gi|146304590|ref|YP_001191906.1|	-	2.5e-14	53.0	0.0	5.8e-14	51.8	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304590|ref|YP_001191906.1|	-	2.9e-09	37.1	0.0	1e-08	35.3	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146304590|ref|YP_001191906.1|	-	0.0039	17.4	0.0	0.0091	16.2	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Polysacc_synt	PF01943.12	gi|146304592|ref|YP_001191908.1|	-	7.9e-15	54.8	32.6	7.9e-15	54.8	22.6	2.6	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.1	gi|146304592|ref|YP_001191908.1|	-	1.1e-13	51.2	54.8	1.7e-13	50.6	18.2	3.1	1	1	2	3	3	3	3	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.1	gi|146304592|ref|YP_001191908.1|	-	2.9e-08	33.6	48.4	6.7e-07	29.2	13.8	3.6	3	1	1	4	4	4	2	Polysaccharide	biosynthesis	C-terminal	domain
Glycos_transf_1	PF00534.15	gi|146304593|ref|YP_001191909.1|	-	1.4e-19	70.1	0.1	3.7e-19	68.7	0.0	1.8	2	1	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.1	gi|146304593|ref|YP_001191909.1|	-	1.2e-08	35.1	0.0	2.9e-08	33.9	0.0	1.6	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_1_2	PF13524.1	gi|146304593|ref|YP_001191909.1|	-	6.1e-05	23.2	0.0	0.00011	22.4	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|146304593|ref|YP_001191909.1|	-	0.013	15.2	0.0	0.039	13.6	0.0	1.9	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
Glycos_transf_2	PF00535.21	gi|146304594|ref|YP_001191910.1|	-	9.8e-09	35.1	0.3	3.4e-08	33.3	0.0	2.0	3	0	0	3	3	3	1	Glycosyl	transferase	family	2
Glycos_transf_1	PF00534.15	gi|146304595|ref|YP_001191911.1|	-	5.3e-29	100.8	0.0	1.9e-28	99.0	0.0	1.7	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.1	gi|146304595|ref|YP_001191911.1|	-	1.6e-21	76.8	0.5	2.5e-21	76.1	0.4	1.3	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_4	PF13692.1	gi|146304595|ref|YP_001191911.1|	-	1.5e-15	57.5	0.0	4.8e-15	55.9	0.0	1.8	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.1	gi|146304595|ref|YP_001191911.1|	-	6.1e-13	49.2	0.1	1.4e-12	48.0	0.1	1.7	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.1	gi|146304595|ref|YP_001191911.1|	-	5.9e-08	32.8	0.0	1.1e-07	31.9	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Clathrin_bdg	PF15045.1	gi|146304595|ref|YP_001191911.1|	-	0.073	12.5	0.1	1.2	8.6	0.0	2.2	2	0	0	2	2	2	0	Clathrin-binding	box	of	Aftiphilin,	vesicle	trafficking
NTP_transferase	PF00483.18	gi|146304596|ref|YP_001191912.1|	-	3.9e-52	177.0	0.0	4.7e-52	176.7	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146304596|ref|YP_001191912.1|	-	5.9e-13	49.2	0.0	7.8e-13	48.8	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|146304596|ref|YP_001191912.1|	-	1.7e-11	43.1	16.8	1.2e-08	34.0	2.6	4.6	2	1	3	5	5	5	4	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|146304596|ref|YP_001191912.1|	-	1.3e-07	30.9	10.1	1.5e-06	27.6	0.1	4.2	4	0	0	4	4	4	2	Hexapeptide	repeat	of	succinyl-transferase
Glycos_transf_2	PF00535.21	gi|146304596|ref|YP_001191912.1|	-	0.0097	15.6	0.0	0.065	12.9	0.0	2.1	1	1	1	2	2	2	1	Glycosyl	transferase	family	2
Methyltransf_21	PF05050.7	gi|146304597|ref|YP_001191913.1|	-	2.2e-20	73.2	0.0	3.1e-20	72.7	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	FkbM	domain
Methyltransf_18	PF12847.2	gi|146304597|ref|YP_001191913.1|	-	2.8e-12	47.2	0.0	4.6e-12	46.5	0.0	1.5	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146304597|ref|YP_001191913.1|	-	0.0016	18.4	0.0	0.0022	18.0	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_22	PF13383.1	gi|146304597|ref|YP_001191913.1|	-	0.0022	17.5	0.0	0.003	17.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|146304597|ref|YP_001191913.1|	-	0.0036	16.9	0.1	0.0087	15.6	0.0	1.5	1	1	0	1	1	1	1	Met-10+	like-protein
PrmA	PF06325.8	gi|146304597|ref|YP_001191913.1|	-	0.0048	16.0	0.0	0.0085	15.2	0.0	1.3	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
MTS	PF05175.9	gi|146304597|ref|YP_001191913.1|	-	0.02	14.2	0.0	0.038	13.3	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	small	domain
Cons_hypoth95	PF03602.10	gi|146304597|ref|YP_001191913.1|	-	0.03	13.7	0.0	0.058	12.7	0.0	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	protein	95
IL6	PF00489.12	gi|146304597|ref|YP_001191913.1|	-	0.059	12.9	0.1	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	Interleukin-6/G-CSF/MGF	family
Phage_portal	PF04860.7	gi|146304597|ref|YP_001191913.1|	-	0.095	11.3	0.1	0.19	10.3	0.0	1.4	2	0	0	2	2	2	0	Phage	portal	protein
Methyltransf_11	PF08241.7	gi|146304597|ref|YP_001191913.1|	-	0.1	13.0	0.0	0.22	12.0	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
Epimerase	PF01370.16	gi|146304598|ref|YP_001191914.1|	-	2.7e-60	203.7	0.0	3.7e-60	203.2	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
RmlD_sub_bind	PF04321.12	gi|146304598|ref|YP_001191914.1|	-	1.4e-19	70.0	0.0	2e-19	69.5	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
Polysacc_synt_2	PF02719.10	gi|146304598|ref|YP_001191914.1|	-	2e-11	43.3	0.0	6.9e-11	41.5	0.0	2.0	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
3Beta_HSD	PF01073.14	gi|146304598|ref|YP_001191914.1|	-	3.7e-11	42.2	0.0	5.6e-11	41.6	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_4	PF07993.7	gi|146304598|ref|YP_001191914.1|	-	7.9e-07	28.2	0.0	9.5e-05	21.4	0.0	2.2	2	0	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.20	gi|146304598|ref|YP_001191914.1|	-	0.00058	19.8	0.2	0.0026	17.7	0.2	2.0	1	1	0	1	1	1	1	short	chain	dehydrogenase
DapB_N	PF01113.15	gi|146304598|ref|YP_001191914.1|	-	0.054	13.4	0.0	0.15	11.9	0.0	1.8	2	0	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
Saccharop_dh	PF03435.13	gi|146304598|ref|YP_001191914.1|	-	0.087	11.7	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	Saccharopine	dehydrogenase
dTDP_sugar_isom	PF00908.12	gi|146304599|ref|YP_001191915.1|	-	1.9e-51	173.9	0.0	2.3e-51	173.5	0.0	1.0	1	0	0	1	1	1	1	dTDP-4-dehydrorhamnose	3,5-epimerase
Cupin_1	PF00190.17	gi|146304599|ref|YP_001191915.1|	-	0.0058	16.0	0.0	0.007	15.7	0.0	1.2	1	0	0	1	1	1	1	Cupin
ARD	PF03079.9	gi|146304599|ref|YP_001191915.1|	-	0.021	14.7	0.0	0.031	14.2	0.0	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
Vac_Fusion	PF02346.11	gi|146304600|ref|YP_001191916.1|	-	1.3e-14	53.3	38.3	0.0019	17.6	1.3	6.1	1	1	7	8	8	8	7	Chordopoxvirus	fusion	protein
Baculo_PEP_C	PF04513.7	gi|146304600|ref|YP_001191916.1|	-	5.3e-09	36.0	14.2	0.0016	18.2	0.4	3.4	1	1	1	3	3	3	3	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
Reo_sigmaC	PF04582.7	gi|146304600|ref|YP_001191916.1|	-	5.4e-07	29.0	20.1	0.0089	15.2	4.1	3.4	1	1	2	3	3	3	3	Reovirus	sigma	C	capsid	protein
IncA	PF04156.9	gi|146304600|ref|YP_001191916.1|	-	3.4e-06	26.7	63.8	0.0017	17.9	22.1	3.1	1	1	2	3	3	3	2	IncA	protein
DUF1664	PF07889.7	gi|146304600|ref|YP_001191916.1|	-	0.00019	21.2	25.1	0.036	13.8	3.0	3.6	1	1	3	4	4	4	4	Protein	of	unknown	function	(DUF1664)
Phage_GPO	PF05929.6	gi|146304600|ref|YP_001191916.1|	-	0.00025	20.3	34.3	0.25	10.5	3.1	3.4	1	1	2	3	3	3	3	Phage	capsid	scaffolding	protein	(GPO)	serine	peptidase
OmdA	PF13376.1	gi|146304600|ref|YP_001191916.1|	-	0.00026	20.5	49.8	2.6	7.7	0.4	9.2	2	1	8	10	10	9	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
BicD	PF09730.4	gi|146304600|ref|YP_001191916.1|	-	0.00039	18.9	37.1	0.031	12.6	7.1	2.1	1	1	1	2	2	2	2	Microtubule-associated	protein	Bicaudal-D
DUF1626	PF07788.6	gi|146304600|ref|YP_001191916.1|	-	0.00039	20.1	0.3	0.00094	18.9	0.2	1.7	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1626)
DUF2730	PF10805.3	gi|146304600|ref|YP_001191916.1|	-	0.0055	16.4	34.2	1.9	8.2	0.3	6.5	1	1	4	7	7	7	4	Protein	of	unknown	function	(DUF2730)
BLOC1_2	PF10046.4	gi|146304600|ref|YP_001191916.1|	-	0.0069	16.4	31.2	7.7	6.7	3.4	5.2	1	1	3	4	4	4	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
XhlA	PF10779.4	gi|146304600|ref|YP_001191916.1|	-	0.0083	16.0	37.7	2	8.3	1.9	5.1	1	1	7	8	8	8	6	Haemolysin	XhlA
DUF1612	PF07756.7	gi|146304600|ref|YP_001191916.1|	-	0.0093	16.0	32.6	2	8.5	4.1	4.3	1	1	5	6	6	6	4	Protein	of	unknown	function	(DUF1612)
Fib_alpha	PF08702.5	gi|146304600|ref|YP_001191916.1|	-	0.016	15.3	25.3	0.11	12.6	7.4	2.9	1	1	1	2	2	2	0	Fibrinogen	alpha/beta	chain	family
FliD_C	PF07195.7	gi|146304600|ref|YP_001191916.1|	-	0.02	14.2	19.3	0.021	14.1	0.6	3.7	1	1	0	2	2	2	0	Flagellar	hook-associated	protein	2	C-terminus
Myosin_tail_1	PF01576.14	gi|146304600|ref|YP_001191916.1|	-	0.02	12.6	60.9	0.016	12.9	13.6	2.2	1	1	1	2	2	2	0	Myosin	tail
LXG	PF04740.7	gi|146304600|ref|YP_001191916.1|	-	0.024	14.4	20.0	1.7	8.4	0.2	4.6	1	1	6	7	7	7	0	LXG	domain	of	WXG	superfamily
DUF3883	PF13020.1	gi|146304600|ref|YP_001191916.1|	-	0.045	13.4	0.2	0.15	11.8	0.1	2.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF3883)
DUF3584	PF12128.3	gi|146304600|ref|YP_001191916.1|	-	0.046	11.0	47.8	0.018	12.3	24.1	2.0	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3584)
ADIP	PF11559.3	gi|146304600|ref|YP_001191916.1|	-	0.054	13.3	53.4	0.39	10.6	7.8	3.5	1	1	2	3	3	3	0	Afadin-	and	alpha	-actinin-Binding
ATG16	PF08614.6	gi|146304600|ref|YP_001191916.1|	-	0.054	13.3	49.2	1.7	8.3	6.5	3.4	1	1	2	3	3	3	0	Autophagy	protein	16	(ATG16)
Cep57_CLD	PF14073.1	gi|146304600|ref|YP_001191916.1|	-	0.063	13.1	55.3	4.4	7.1	11.1	4.7	1	1	4	5	5	5	0	Centrosome	localisation	domain	of	Cep57
TMP_2	PF06791.8	gi|146304600|ref|YP_001191916.1|	-	0.064	12.8	13.7	1.9	8.0	1.6	3.4	1	1	3	4	4	4	0	Prophage	tail	length	tape	measure	protein
NPV_P10	PF05531.7	gi|146304600|ref|YP_001191916.1|	-	0.065	13.4	12.9	8	6.7	0.1	5.2	1	1	1	2	2	1	0	Nucleopolyhedrovirus	P10	protein
Nsp1_C	PF05064.8	gi|146304600|ref|YP_001191916.1|	-	0.077	12.6	30.5	3.2	7.4	3.2	4.4	1	1	4	5	5	5	0	Nsp1-like	C-terminal	region
PhageMin_Tail	PF10145.4	gi|146304600|ref|YP_001191916.1|	-	0.13	11.8	8.9	0.37	10.3	4.6	2.7	2	1	0	2	2	2	0	Phage-related	minor	tail	protein
DUF4455	PF14643.1	gi|146304600|ref|YP_001191916.1|	-	0.17	10.5	38.6	0.7	8.4	18.2	2.5	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4455)
ORF6C	PF10552.4	gi|146304600|ref|YP_001191916.1|	-	0.17	11.6	31.2	2.7	7.7	0.7	6.1	1	1	8	9	9	9	0	ORF6C	domain
AAA_13	PF13166.1	gi|146304600|ref|YP_001191916.1|	-	0.19	10.1	33.0	0.45	8.9	23.0	1.5	1	1	0	1	1	1	0	AAA	domain
UvrD_C	PF13361.1	gi|146304600|ref|YP_001191916.1|	-	0.22	10.9	30.6	0.24	10.8	4.5	2.9	1	1	1	2	2	2	0	UvrD-like	helicase	C-terminal	domain
ERM	PF00769.14	gi|146304600|ref|YP_001191916.1|	-	0.31	10.5	66.3	1.4	8.3	26.1	2.2	1	1	1	2	2	2	0	Ezrin/radixin/moesin	family
FliD_N	PF02465.13	gi|146304600|ref|YP_001191916.1|	-	0.32	11.3	23.9	1.9	8.8	2.1	4.1	1	1	3	4	4	4	0	Flagellar	hook-associated	protein	2	N-terminus
Rootletin	PF15035.1	gi|146304600|ref|YP_001191916.1|	-	0.47	10.3	52.7	3.6	7.5	16.4	3.4	1	1	1	2	2	2	0	Ciliary	rootlet	component,	centrosome	cohesion
MscS_porin	PF12795.2	gi|146304600|ref|YP_001191916.1|	-	0.51	9.6	49.3	2.7	7.2	12.2	3.1	1	1	3	4	4	4	0	Mechanosensitive	ion	channel	porin	domain
DUF2951	PF11166.3	gi|146304600|ref|YP_001191916.1|	-	0.75	9.6	30.8	16	5.4	0.5	7.2	1	1	8	9	9	9	0	Protein	of	unknown	function	(DUF2951)
WXG100	PF06013.7	gi|146304600|ref|YP_001191916.1|	-	0.86	9.6	20.2	3.8	7.5	0.8	5.1	1	1	5	7	7	7	0	Proteins	of	100	residues	with	WXG
Tropomyosin	PF00261.15	gi|146304600|ref|YP_001191916.1|	-	0.93	8.5	67.0	3.6	6.6	46.4	2.0	1	1	0	1	1	1	0	Tropomyosin
ALIX_LYPXL_bnd	PF13949.1	gi|146304600|ref|YP_001191916.1|	-	0.94	8.3	39.8	3e+02	0.1	27.5	2.9	1	1	0	1	1	1	0	ALIX	V-shaped	domain	binding	to	HIV
Transposase_22	PF02994.9	gi|146304600|ref|YP_001191916.1|	-	1.5	7.2	31.6	0.38	9.2	2.5	2.8	1	1	1	2	2	2	0	L1	transposable	element
DUF2400	PF09674.5	gi|146304600|ref|YP_001191916.1|	-	2	8.0	15.4	7.3	6.2	1.7	2.8	1	1	2	3	3	3	0	Protein	of	unknown	function	(DUF2400)
DUF2164	PF09932.4	gi|146304600|ref|YP_001191916.1|	-	2.1	8.2	17.5	17	5.2	0.1	6.9	1	1	7	8	8	8	0	Uncharacterized	conserved	protein	(DUF2164)
Seryl_tRNA_N	PF02403.17	gi|146304600|ref|YP_001191916.1|	-	2.2	8.3	44.9	0.24	11.4	6.4	3.5	1	1	2	3	3	3	0	Seryl-tRNA	synthetase	N-terminal	domain
YjcZ	PF13990.1	gi|146304600|ref|YP_001191916.1|	-	2.3	7.2	29.3	1	8.4	4.8	2.9	1	1	2	3	3	3	0	YjcZ-like	protein
L31	PF09784.4	gi|146304600|ref|YP_001191916.1|	-	2.6	8.1	27.7	4.4	7.4	2.5	4.5	1	1	5	6	6	6	0	Mitochondrial	ribosomal	protein	L31
EzrA	PF06160.7	gi|146304600|ref|YP_001191916.1|	-	2.8	6.0	40.1	24	2.9	27.7	1.9	1	1	0	1	1	1	0	Septation	ring	formation	regulator,	EzrA
APG6	PF04111.7	gi|146304600|ref|YP_001191916.1|	-	3.2	6.7	52.3	7.1	5.5	17.3	2.9	1	1	2	3	3	3	0	Autophagy	protein	Apg6
Snapin_Pallidin	PF14712.1	gi|146304600|ref|YP_001191916.1|	-	4.2	7.7	41.5	1.5	9.2	5.5	4.8	2	1	3	5	5	4	0	Snapin/Pallidin
AAA_27	PF13514.1	gi|146304600|ref|YP_001191916.1|	-	4.4	4.8	53.3	1.7	6.2	29.8	1.8	1	1	0	1	1	1	0	AAA	domain
Flagellin_C	PF00700.16	gi|146304600|ref|YP_001191916.1|	-	4.9	7.3	18.1	31	4.8	1.0	4.5	1	1	3	4	4	4	0	Bacterial	flagellin	C-terminal	helical	region
Prefoldin	PF02996.12	gi|146304600|ref|YP_001191916.1|	-	4.9	6.8	44.9	1.6	8.4	2.6	5.3	1	1	7	8	8	8	0	Prefoldin	subunit
GP41	PF00517.12	gi|146304600|ref|YP_001191916.1|	-	5	6.6	11.4	21	4.6	0.4	4.1	1	1	3	4	4	4	0	Retroviral	envelope	protein
GAS	PF13851.1	gi|146304600|ref|YP_001191916.1|	-	6.8	5.8	53.1	3.2	6.9	9.2	3.3	1	1	2	3	3	3	0	Growth-arrest	specific	micro-tubule	binding
DUF4298	PF14131.1	gi|146304600|ref|YP_001191916.1|	-	7	6.5	25.7	70	3.3	0.2	6.4	1	1	4	5	5	5	0	Domain	of	unknown	function	(DUF4298)
ING	PF12998.2	gi|146304600|ref|YP_001191916.1|	-	8	6.7	30.9	3.9e+02	1.3	7.7	3.5	1	1	1	2	2	1	0	Inhibitor	of	growth	proteins	N-terminal	histone-binding
Sorb	PF02208.11	gi|146304601|ref|YP_001191917.1|	-	0.06	12.7	0.3	0.19	11.1	0.0	2.0	2	0	0	2	2	2	0	Sorbin	homologous	domain
Hormone_recep	PF00104.25	gi|146304601|ref|YP_001191917.1|	-	0.11	11.6	0.0	0.15	11.1	0.0	1.2	1	0	0	1	1	1	0	Ligand-binding	domain	of	nuclear	hormone	receptor
DUF3800	PF12686.2	gi|146304602|ref|YP_001191918.1|	-	0.017	14.7	5.8	0.03	13.9	3.6	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3800)
F-actin_cap_A	PF01267.12	gi|146304602|ref|YP_001191918.1|	-	0.032	13.3	0.1	0.045	12.7	0.1	1.2	1	0	0	1	1	1	0	F-actin	capping	protein	alpha	subunit
BcrAD_BadFG	PF01869.15	gi|146304603|ref|YP_001191919.1|	-	8.5e-31	107.2	1.1	1e-30	106.9	0.8	1.0	1	0	0	1	1	1	1	BadF/BadG/BcrA/BcrD	ATPase	family
bact-PGI_C	PF10432.4	gi|146304604|ref|YP_001191920.1|	-	4.5e-31	107.6	0.0	3e-30	104.9	0.0	2.2	2	1	0	2	2	2	1	Bacterial	phospho-glucose	isomerase	C-terminal	region
SIS	PF01380.17	gi|146304604|ref|YP_001191920.1|	-	1e-07	31.6	0.4	4e-07	29.6	0.0	2.0	1	1	1	2	2	2	1	SIS	domain
SIS_2	PF13580.1	gi|146304604|ref|YP_001191920.1|	-	1.2e-05	25.0	2.9	0.00013	21.7	0.1	2.2	1	1	1	2	2	2	1	SIS	domain
NTP_transferase	PF00483.18	gi|146304605|ref|YP_001191921.1|	-	3.5e-28	98.5	0.0	7.9e-27	94.1	0.0	2.0	1	1	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146304605|ref|YP_001191921.1|	-	2.6e-11	43.8	0.0	3.6e-11	43.3	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.14	gi|146304605|ref|YP_001191921.1|	-	0.00083	18.9	0.0	0.0013	18.3	0.0	1.3	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF2533	PF10752.4	gi|146304606|ref|YP_001191922.1|	-	0.014	15.6	0.6	0.037	14.3	0.2	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2533)
Sugarporin_N	PF11471.3	gi|146304606|ref|YP_001191922.1|	-	0.05	13.2	0.2	0.13	11.9	0.1	1.6	1	0	0	1	1	1	0	Maltoporin	periplasmic	N-terminal	extension
PIN	PF01850.16	gi|146304606|ref|YP_001191922.1|	-	0.058	13.7	0.4	0.21	11.9	0.2	2.0	2	0	0	2	2	2	0	PIN	domain
Enkurin	PF13864.1	gi|146304606|ref|YP_001191922.1|	-	0.059	13.5	0.1	0.23	11.6	0.1	2.1	1	0	0	1	1	1	0	Calmodulin-binding
End3	PF12761.2	gi|146304607|ref|YP_001191923.1|	-	0.057	13.0	0.3	0.1	12.2	0.1	1.5	1	1	0	1	1	1	0	Actin	cytoskeleton-regulatory	complex	protein	END3
DUF2990	PF11693.3	gi|146304607|ref|YP_001191923.1|	-	0.4	10.5	2.1	0.91	9.4	0.1	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF2990)
TFIIS_C	PF01096.13	gi|146304608|ref|YP_001191924.1|	-	3e-22	77.9	14.6	3e-20	71.5	2.2	3.1	3	0	0	3	3	3	2	Transcription	factor	S-II	(TFIIS)
RNA_POL_M_15KD	PF02150.11	gi|146304608|ref|YP_001191924.1|	-	1.9e-08	33.8	1.8	1.9e-08	33.8	1.3	2.8	2	1	0	2	2	1	1	RNA	polymerases	M/15	Kd	subunit
DUF2387	PF09526.5	gi|146304608|ref|YP_001191924.1|	-	2e-08	34.0	7.0	2.1e-05	24.3	1.2	2.3	1	1	1	2	2	2	2	Probable	metal-binding	protein	(DUF2387)
Zn_Tnp_IS1595	PF12760.2	gi|146304608|ref|YP_001191924.1|	-	1.6e-07	30.9	8.1	0.0024	17.6	1.1	2.3	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
zf-TFIIB	PF13453.1	gi|146304608|ref|YP_001191924.1|	-	3.5e-07	29.3	1.1	3.5e-07	29.3	0.7	2.8	2	1	0	2	2	2	1	Transcription	factor	zinc-finger
DZR	PF12773.2	gi|146304608|ref|YP_001191924.1|	-	0.002	17.9	11.0	0.022	14.5	1.0	2.9	2	1	0	2	2	2	1	Double	zinc	ribbon
Zn-ribbon_8	PF09723.5	gi|146304608|ref|YP_001191924.1|	-	0.0031	17.4	12.9	2.3	8.2	0.3	4.2	4	0	0	4	4	4	1	Zinc	ribbon	domain
Terminase_GpA	PF05876.7	gi|146304608|ref|YP_001191924.1|	-	0.0048	15.3	3.7	0.008	14.5	0.6	1.9	1	1	1	2	2	2	1	Phage	terminase	large	subunit	(GpA)
TF_Zn_Ribbon	PF08271.7	gi|146304608|ref|YP_001191924.1|	-	0.0076	15.5	11.7	0.009	15.3	0.3	4.1	4	1	0	4	4	4	1	TFIIB	zinc-binding
Ribosomal_L37ae	PF01780.14	gi|146304608|ref|YP_001191924.1|	-	0.016	15.0	0.3	0.016	15.0	0.2	2.8	2	1	0	2	2	2	0	Ribosomal	L37ae	protein	family
zf-ribbon_3	PF13248.1	gi|146304608|ref|YP_001191924.1|	-	0.023	13.8	14.4	2.4	7.4	0.2	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146304608|ref|YP_001191924.1|	-	0.025	14.0	14.8	4.8	6.8	0.4	4.2	4	0	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146304608|ref|YP_001191924.1|	-	0.028	13.9	15.2	0.14	11.7	0.2	4.3	4	1	0	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_4	PF13717.1	gi|146304608|ref|YP_001191924.1|	-	0.035	13.7	15.1	0.18	11.5	0.3	4.3	4	1	0	4	4	4	0	zinc-ribbon	domain
zf-UBP	PF02148.14	gi|146304608|ref|YP_001191924.1|	-	0.036	14.1	2.5	0.67	10.1	0.3	2.4	1	1	1	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
OrfB_Zn_ribbon	PF07282.6	gi|146304608|ref|YP_001191924.1|	-	0.061	12.9	10.9	0.52	10.0	1.1	2.9	2	1	1	3	3	3	0	Putative	transposase	DNA-binding	domain
Baculo_LEF5_C	PF11792.3	gi|146304608|ref|YP_001191924.1|	-	0.12	11.7	6.9	0.66	9.4	0.0	3.4	3	1	0	3	3	3	0	Baculoviridae	late	expression	factor	5	C-terminal	domain
C1_1	PF00130.17	gi|146304608|ref|YP_001191924.1|	-	0.13	11.9	7.9	0.27	11.0	1.2	2.9	3	0	0	3	3	3	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
DUF1062	PF06353.7	gi|146304608|ref|YP_001191924.1|	-	0.15	12.2	2.0	11	6.2	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1062)
NMD3	PF04981.8	gi|146304608|ref|YP_001191924.1|	-	0.15	11.1	5.1	0.25	10.4	0.8	2.2	1	1	1	2	2	2	0	NMD3	family
eIF-5_eIF-2B	PF01873.12	gi|146304608|ref|YP_001191924.1|	-	0.21	11.2	6.0	4.9	6.8	0.1	2.3	2	0	0	2	2	2	0	Domain	found	in	IF2B/IF5
zf-H2C2_2	PF13465.1	gi|146304608|ref|YP_001191924.1|	-	0.23	11.8	16.4	2.2	8.7	0.6	4.1	4	0	0	4	4	4	0	Zinc-finger	double	domain
Ribosomal_S27e	PF01667.12	gi|146304608|ref|YP_001191924.1|	-	0.3	10.6	10.8	0.51	9.9	1.2	3.4	2	2	0	2	2	2	0	Ribosomal	protein	S27
zf-Mss51	PF13824.1	gi|146304608|ref|YP_001191924.1|	-	0.31	10.9	4.7	5	7.0	0.2	2.3	2	0	0	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-CHY	PF05495.7	gi|146304608|ref|YP_001191924.1|	-	0.91	9.7	9.9	5.3	7.2	3.2	2.7	1	1	1	2	2	2	0	CHY	zinc	finger
Cytochrom_c3_2	PF14537.1	gi|146304608|ref|YP_001191924.1|	-	0.92	9.9	4.1	9.4	6.6	3.1	2.1	1	1	0	1	1	1	0	Cytochrome	c3
zf-RING_4	PF14570.1	gi|146304608|ref|YP_001191924.1|	-	1	8.9	11.9	3.4	7.3	0.1	3.6	3	1	1	4	4	4	0	RING/Ubox	like	zinc-binding	domain
Desulfoferrod_N	PF06397.7	gi|146304608|ref|YP_001191924.1|	-	1.1	8.7	11.1	1.1	8.6	0.1	2.6	3	0	0	3	3	2	0	Desulfoferrodoxin,	N-terminal	domain
Opy2	PF09463.5	gi|146304608|ref|YP_001191924.1|	-	1.1	9.3	7.3	7	6.8	0.0	3.6	4	0	0	4	4	4	0	Opy2	protein
UPF0547	PF10571.4	gi|146304608|ref|YP_001191924.1|	-	1.6	8.4	15.2	8	6.2	2.7	4.1	3	1	0	3	3	3	0	Uncharacterised	protein	family	UPF0547
zf-UBR	PF02207.15	gi|146304608|ref|YP_001191924.1|	-	1.6	8.4	5.8	11	5.8	0.3	3.0	3	0	0	3	3	3	0	Putative	zinc	finger	in	N-recognin	(UBR	box)
DUF2296	PF10058.4	gi|146304608|ref|YP_001191924.1|	-	1.8	8.3	13.4	7.9	6.3	1.8	3.6	2	2	0	2	2	2	0	Predicted	integral	membrane	metal-binding	protein	(DUF2296)
Nudix_N_2	PF14803.1	gi|146304608|ref|YP_001191924.1|	-	2.4	7.9	8.4	24	4.7	0.1	4.0	4	0	0	4	4	4	0	Nudix	N-terminal
C1_3	PF07649.7	gi|146304608|ref|YP_001191924.1|	-	2.5	8.2	6.8	14	5.7	0.1	2.9	3	0	0	3	3	3	0	C1-like	domain
Ogr_Delta	PF04606.7	gi|146304608|ref|YP_001191924.1|	-	2.5	7.8	11.2	2.7	7.7	0.1	3.9	4	0	0	4	4	4	0	Ogr/Delta-like	zinc	finger
Rpr2	PF04032.11	gi|146304608|ref|YP_001191924.1|	-	2.8	7.8	12.1	7.8	6.4	0.5	3.1	2	2	0	2	2	2	0	RNAse	P	Rpr2/Rpp21/SNM1	subunit	domain
zinc-ribbons_6	PF07191.7	gi|146304608|ref|YP_001191924.1|	-	3.2	7.6	8.5	1	9.1	0.3	2.8	2	1	0	2	2	2	0	zinc-ribbons
C1_4	PF07975.7	gi|146304608|ref|YP_001191924.1|	-	3.9	7.5	11.2	9.3	6.3	0.1	3.3	2	2	1	3	3	3	0	TFIIH	C1-like	domain
Fer4_8	PF13183.1	gi|146304608|ref|YP_001191924.1|	-	4.6	7.3	10.1	1	9.4	0.7	2.7	2	2	0	2	2	2	0	4Fe-4S	dicluster	domain
DUF3797	PF12677.2	gi|146304608|ref|YP_001191924.1|	-	4.6	6.9	13.1	1.4	8.6	0.2	3.9	4	0	0	4	4	4	0	Domain	of	unknown	function	(DUF3797)
IBR	PF01485.16	gi|146304608|ref|YP_001191924.1|	-	5.1	7.0	13.1	1.2	9.0	1.6	2.9	2	1	0	2	2	2	0	IBR	domain
Lar_restr_allev	PF14354.1	gi|146304608|ref|YP_001191924.1|	-	5.7	7.3	11.6	3	8.2	0.8	3.0	1	1	2	3	3	3	0	Restriction	alleviation	protein	Lar
zf-RING_3	PF14369.1	gi|146304608|ref|YP_001191924.1|	-	7	6.7	8.0	5.3	7.1	0.0	3.2	3	1	0	3	3	3	0	zinc-finger
Zn_ribbon_recom	PF13408.1	gi|146304608|ref|YP_001191924.1|	-	7.7	6.8	12.2	0.13	12.5	0.7	2.7	2	1	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-ISL3	PF14690.1	gi|146304608|ref|YP_001191924.1|	-	8	6.5	12.9	65	3.6	0.0	4.0	3	1	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2082	PF09855.4	gi|146304608|ref|YP_001191924.1|	-	8.3	6.3	14.1	19	5.1	0.5	4.0	3	1	0	4	4	4	0	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
zf-tcix	PF14952.1	gi|146304608|ref|YP_001191924.1|	-	9.7	5.6	14.7	1.8	7.9	0.0	3.8	4	0	0	4	4	4	0	Putative	treble-clef,	zinc-finger,	Zn-binding
RNA_pol_L_2	PF13656.1	gi|146304610|ref|YP_001191926.1|	-	2.8e-20	71.5	0.0	3.3e-20	71.2	0.0	1.1	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
RNA_pol_L	PF01193.19	gi|146304610|ref|YP_001191926.1|	-	1.7e-09	36.6	0.0	2.7e-09	36.0	0.0	1.3	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
ECR1_N	PF14382.1	gi|146304611|ref|YP_001191927.1|	-	7.7e-11	41.0	0.1	4e-10	38.7	0.0	2.1	2	0	0	2	2	2	1	Exosome	complex	exonuclease	RRP4	N-terminal	region
Auto_anti-p27	PF06677.7	gi|146304611|ref|YP_001191927.1|	-	0.00099	18.8	1.9	0.0017	18.0	1.3	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-ribbon_3	PF13248.1	gi|146304611|ref|YP_001191927.1|	-	0.0027	16.8	1.0	0.0057	15.8	0.7	1.5	1	1	0	1	1	1	1	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146304611|ref|YP_001191927.1|	-	0.0073	16.2	1.4	0.013	15.4	1.0	1.4	1	0	0	1	1	1	1	Zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|146304611|ref|YP_001191927.1|	-	0.0076	15.8	1.1	0.014	14.9	0.8	1.4	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
DUF2318	PF10080.4	gi|146304611|ref|YP_001191927.1|	-	0.01	15.5	0.1	0.019	14.7	0.1	1.4	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2318)
NOB1_Zn_bind	PF08772.6	gi|146304611|ref|YP_001191927.1|	-	0.011	15.5	0.2	0.024	14.4	0.1	1.6	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
TerY-C	PF15616.1	gi|146304611|ref|YP_001191927.1|	-	0.034	14.0	1.3	0.17	11.8	0.2	2.0	2	0	0	2	2	2	0	TerY-C	metal	binding	domain
DZR	PF12773.2	gi|146304611|ref|YP_001191927.1|	-	0.037	13.8	0.2	0.059	13.1	0.1	1.3	1	0	0	1	1	1	0	Double	zinc	ribbon
HypA	PF01155.14	gi|146304611|ref|YP_001191927.1|	-	0.046	13.4	0.2	0.096	12.3	0.1	1.5	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-FPG_IleRS	PF06827.9	gi|146304611|ref|YP_001191927.1|	-	0.1	12.2	0.7	0.34	10.6	0.2	2.0	2	0	0	2	2	2	0	Zinc	finger	found	in	FPG	and	IleRS
DUF3797	PF12677.2	gi|146304611|ref|YP_001191927.1|	-	0.13	11.9	2.0	0.16	11.6	0.8	1.7	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF3797)
TF_Zn_Ribbon	PF08271.7	gi|146304611|ref|YP_001191927.1|	-	0.17	11.2	5.1	0.67	9.3	3.5	1.9	1	1	0	1	1	1	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.1	gi|146304611|ref|YP_001191927.1|	-	0.42	10.1	3.3	2.2	7.8	1.0	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
UPF0547	PF10571.4	gi|146304611|ref|YP_001191927.1|	-	0.98	9.1	3.6	15	5.3	0.7	2.5	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
RecR	PF02132.10	gi|146304611|ref|YP_001191927.1|	-	1.3	8.4	3.7	12	5.3	0.2	2.3	1	1	1	2	2	2	0	RecR	protein
Diphthamide_syn	PF01866.12	gi|146304612|ref|YP_001191928.1|	-	1.7e-95	319.7	0.0	2e-95	319.5	0.0	1.0	1	0	0	1	1	1	1	Putative	diphthamide	synthesis	protein
DUF3656	PF12392.3	gi|146304612|ref|YP_001191928.1|	-	0.064	13.3	0.0	0.43	10.6	0.0	2.1	2	0	0	2	2	2	0	Collagenase
Ribosomal_L16	PF00252.13	gi|146304613|ref|YP_001191929.1|	-	4.3e-30	104.1	0.1	4.9e-30	104.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L16p/L10e
Ribonuc_2-5A	PF06479.7	gi|146304613|ref|YP_001191929.1|	-	0.044	13.6	0.0	0.55	10.0	0.0	2.1	2	0	0	2	2	2	0	Ribonuclease	2-5A
Thioredoxin_3	PF13192.1	gi|146304614|ref|YP_001191930.1|	-	3e-10	39.7	0.0	5.2e-10	38.9	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin	domain
Glutaredoxin	PF00462.19	gi|146304614|ref|YP_001191930.1|	-	0.00046	20.1	0.0	0.0013	18.7	0.0	1.8	1	0	0	1	1	1	1	Glutaredoxin
Thioredoxin_4	PF13462.1	gi|146304614|ref|YP_001191930.1|	-	0.0069	16.4	0.0	0.013	15.5	0.0	1.4	1	0	0	1	1	1	1	Thioredoxin
Thioredoxin_2	PF13098.1	gi|146304614|ref|YP_001191930.1|	-	0.056	13.6	0.2	1.6	8.9	0.0	2.3	1	1	1	2	2	2	0	Thioredoxin-like	domain
Pox_VLTF3	PF04947.9	gi|146304614|ref|YP_001191930.1|	-	0.06	12.8	0.0	0.1	12.0	0.0	1.4	1	0	0	1	1	1	0	Poxvirus	Late	Transcription	Factor	VLTF3	like
UPF0175	PF03683.8	gi|146304614|ref|YP_001191930.1|	-	0.075	12.5	0.0	0.16	11.4	0.0	1.5	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0175)
Helicase_C_2	PF13307.1	gi|146304615|ref|YP_001191931.1|	-	2.3e-27	95.9	0.0	6.2e-27	94.5	0.0	1.7	1	0	0	1	1	1	1	Helicase	C-terminal	domain
DEAD_2	PF06733.10	gi|146304615|ref|YP_001191931.1|	-	4.1e-21	75.1	0.0	1e-20	73.8	0.0	1.7	1	1	0	1	1	1	1	DEAD_2
ResIII	PF04851.10	gi|146304615|ref|YP_001191931.1|	-	3.2e-05	23.8	0.0	0.016	15.0	0.0	2.7	3	0	0	3	3	3	2	Type	III	restriction	enzyme,	res	subunit
DEAD	PF00270.24	gi|146304615|ref|YP_001191931.1|	-	6.5e-05	22.4	0.0	0.051	13.0	0.0	3.6	4	0	0	4	4	4	1	DEAD/DEAH	box	helicase
PhoH	PF02562.11	gi|146304615|ref|YP_001191931.1|	-	0.026	13.7	0.0	0.34	10.1	0.0	2.4	2	0	0	2	2	2	0	PhoH-like	protein
AAA_22	PF13401.1	gi|146304615|ref|YP_001191931.1|	-	0.26	11.4	1.6	5	7.2	0.7	2.8	2	1	1	3	3	3	0	AAA	domain
NapD	PF03927.8	gi|146304616|ref|YP_001191932.1|	-	0.0088	15.8	0.0	0.012	15.3	0.0	1.2	1	0	0	1	1	1	1	NapD	protein
Rieske	PF00355.21	gi|146304617|ref|YP_001191933.1|	-	2.5e-14	52.6	0.0	2.7e-14	52.5	0.0	1.0	1	0	0	1	1	1	1	Rieske	[2Fe-2S]	domain
Rieske_2	PF13806.1	gi|146304617|ref|YP_001191933.1|	-	2.9e-05	23.7	0.0	3.9e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Rieske-like	[2Fe-2S]	domain
DHquinase_I	PF01487.10	gi|146304618|ref|YP_001191934.1|	-	1.1e-10	41.5	0.0	3.5e-08	33.3	0.0	2.1	2	0	0	2	2	2	2	Type	I	3-dehydroquinase
EPSP_synthase	PF00275.15	gi|146304619|ref|YP_001191935.1|	-	6.7e-56	189.4	0.0	6.2e-53	179.7	0.0	2.1	1	1	0	1	1	1	1	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
GHMP_kinases_N	PF00288.21	gi|146304620|ref|YP_001191936.1|	-	3e-08	33.6	0.8	7.7e-08	32.2	0.6	1.7	1	0	0	1	1	1	1	GHMP	kinases	N	terminal	domain
GHMP_kinases_C	PF08544.8	gi|146304620|ref|YP_001191936.1|	-	2.2e-05	24.5	0.0	6e-05	23.1	0.0	1.8	1	0	0	1	1	1	1	GHMP	kinases	C	terminal
Hema_stalk	PF08720.5	gi|146304620|ref|YP_001191936.1|	-	0.088	12.3	0.2	0.33	10.4	0.0	2.0	3	0	0	3	3	3	0	Influenza	C	hemagglutinin	stalk
Chorismate_synt	PF01264.16	gi|146304621|ref|YP_001191937.1|	-	2.6e-129	430.6	0.0	3e-129	430.4	0.0	1.0	1	0	0	1	1	1	1	Chorismate	synthase
Shikimate_dh_N	PF08501.6	gi|146304622|ref|YP_001191938.1|	-	1.7e-26	92.1	0.0	3.1e-26	91.2	0.0	1.5	1	0	0	1	1	1	1	Shikimate	dehydrogenase	substrate	binding	domain
Shikimate_DH	PF01488.15	gi|146304622|ref|YP_001191938.1|	-	2.2e-08	34.2	0.0	3.6e-08	33.5	0.0	1.3	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
DHQ_synthase	PF01761.15	gi|146304623|ref|YP_001191939.1|	-	1.5e-93	312.4	0.1	1.8e-93	312.2	0.1	1.0	1	0	0	1	1	1	1	3-dehydroquinate	synthase
Fe-ADH	PF00465.14	gi|146304623|ref|YP_001191939.1|	-	3.5e-07	29.1	0.1	0.0046	15.6	0.0	2.3	2	0	0	2	2	2	2	Iron-containing	alcohol	dehydrogenase
Fe-ADH_2	PF13685.1	gi|146304623|ref|YP_001191939.1|	-	1.1e-06	28.2	0.0	1.8e-06	27.4	0.0	1.4	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DAHP_synth_1	PF00793.15	gi|146304624|ref|YP_001191940.1|	-	5.7e-69	231.8	0.0	7.2e-69	231.4	0.0	1.1	1	0	0	1	1	1	1	DAHP	synthetase	I	family
NeuB	PF03102.9	gi|146304624|ref|YP_001191940.1|	-	9.7e-07	28.1	0.0	0.00038	19.6	0.0	2.3	2	1	0	2	2	2	2	NeuB	family
Arc_PepC	PF06819.6	gi|146304624|ref|YP_001191940.1|	-	0.057	13.3	0.0	1	9.2	0.0	2.4	1	1	1	2	2	2	0	Archaeal	Peptidase	A24	C-terminal	Domain
PDH	PF02153.12	gi|146304625|ref|YP_001191941.1|	-	1.4e-21	76.5	0.0	2.6e-21	75.6	0.0	1.4	1	0	0	1	1	1	1	Prephenate	dehydrogenase
CM_2	PF01817.16	gi|146304625|ref|YP_001191941.1|	-	4.3e-17	61.9	0.3	8.6e-17	61.0	0.2	1.5	1	0	0	1	1	1	1	Chorismate	mutase	type	II
F420_oxidored	PF03807.12	gi|146304625|ref|YP_001191941.1|	-	8e-10	39.0	0.0	1.6e-09	38.0	0.0	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Shikimate_DH	PF01488.15	gi|146304625|ref|YP_001191941.1|	-	1.2e-06	28.6	0.0	2.3e-06	27.7	0.0	1.5	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
IlvN	PF07991.7	gi|146304625|ref|YP_001191941.1|	-	6.7e-06	25.5	0.0	1e-05	24.9	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
NAD_binding_2	PF03446.10	gi|146304625|ref|YP_001191941.1|	-	0.00024	20.9	0.0	0.00045	20.1	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.14	gi|146304625|ref|YP_001191941.1|	-	0.001	18.2	0.0	0.0018	17.4	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
3HCDH_N	PF02737.13	gi|146304625|ref|YP_001191941.1|	-	0.011	15.4	0.0	0.04	13.5	0.0	1.9	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DUF552	PF04472.7	gi|146304625|ref|YP_001191941.1|	-	0.03	14.2	0.0	0.2	11.6	0.0	2.4	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF552)
RDM	PF11002.3	gi|146304625|ref|YP_001191941.1|	-	0.042	13.5	0.0	0.12	12.0	0.0	1.7	1	0	0	1	1	1	0	RFPL	defining	motif	(RDM)
Transket_pyr	PF02779.19	gi|146304626|ref|YP_001191942.1|	-	1.3e-37	129.0	0.0	2.2e-37	128.2	0.0	1.3	1	0	0	1	1	1	1	Transketolase,	pyrimidine	binding	domain
Transketolase_C	PF02780.15	gi|146304626|ref|YP_001191942.1|	-	5.6e-30	103.8	0.2	1.3e-29	102.6	0.1	1.7	1	0	0	1	1	1	1	Transketolase,	C-terminal	domain
Transketolase_N	PF00456.16	gi|146304627|ref|YP_001191943.1|	-	1e-42	146.1	0.0	1.9e-42	145.3	0.0	1.3	1	1	0	1	1	1	1	Transketolase,	thiamine	diphosphate	binding	domain
DXP_synthase_N	PF13292.1	gi|146304627|ref|YP_001191943.1|	-	8.2e-11	41.3	0.1	1e-07	31.1	0.2	2.5	1	1	1	2	2	2	2	1-deoxy-D-xylulose-5-phosphate	synthase
TPP_enzyme_C	PF02775.16	gi|146304627|ref|YP_001191943.1|	-	3.4e-08	33.1	0.7	3.7e-07	29.8	0.5	2.1	1	1	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
E1_dh	PF00676.15	gi|146304627|ref|YP_001191943.1|	-	1.3e-06	27.3	0.0	2.2e-06	26.6	0.0	1.3	1	0	0	1	1	1	1	Dehydrogenase	E1	component
XFP_N	PF09364.5	gi|146304627|ref|YP_001191943.1|	-	2.1e-05	23.2	0.1	2.7e-05	22.9	0.1	1.1	1	0	0	1	1	1	1	XFP	N-terminal	domain
DUF2421	PF10334.4	gi|146304627|ref|YP_001191943.1|	-	0.01	15.4	0.0	0.018	14.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2421)
ThiF	PF00899.16	gi|146304628|ref|YP_001191944.1|	-	7.3e-41	139.1	0.1	1.1e-40	138.6	0.1	1.3	1	0	0	1	1	1	1	ThiF	family
MoeZ_MoeB	PF05237.8	gi|146304628|ref|YP_001191944.1|	-	2.1e-09	36.8	0.5	4.1e-09	35.9	0.3	1.5	1	0	0	1	1	1	1	MoeZ/MoeB	domain
Saccharop_dh	PF03435.13	gi|146304628|ref|YP_001191944.1|	-	2e-05	23.7	0.0	2.9e-05	23.2	0.0	1.2	1	0	0	1	1	1	1	Saccharopine	dehydrogenase
UPF0104	PF03706.8	gi|146304629|ref|YP_001191945.1|	-	5.9e-12	45.4	17.3	9.2e-12	44.8	12.0	1.3	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0104)
DUF4367	PF14285.1	gi|146304631|ref|YP_001191947.1|	-	0.073	12.3	0.1	0.079	12.2	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4367)
Glu_synthase	PF01645.12	gi|146304632|ref|YP_001191948.1|	-	1.6e-99	333.2	1.3	7.6e-94	314.6	0.4	2.2	2	0	0	2	2	2	2	Conserved	region	in	glutamate	synthase
Glu_syn_central	PF04898.9	gi|146304632|ref|YP_001191948.1|	-	3.9e-12	46.0	0.0	1.8e-05	24.1	0.0	3.1	3	0	0	3	3	3	3	Glutamate	synthase	central	domain
FMN_dh	PF01070.13	gi|146304632|ref|YP_001191948.1|	-	9.5e-10	37.8	9.5	0.00065	18.6	3.3	3.2	3	0	0	3	3	3	3	FMN-dependent	dehydrogenase
NMO	PF03060.10	gi|146304632|ref|YP_001191948.1|	-	0.05	12.7	8.7	0.45	9.5	5.6	2.1	1	1	1	2	2	2	0	Nitronate	monooxygenase
DHO_dh	PF01180.16	gi|146304632|ref|YP_001191948.1|	-	0.12	11.2	1.2	0.21	10.4	0.3	1.7	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
Hexapep	PF00132.19	gi|146304632|ref|YP_001191948.1|	-	0.15	11.6	4.4	1.5	8.4	0.6	3.0	3	0	0	3	3	3	0	Bacterial	transferase	hexapeptide	(six	repeats)
IMPDH	PF00478.20	gi|146304632|ref|YP_001191948.1|	-	0.16	10.8	2.8	0.48	9.2	1.8	1.9	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
PcrB	PF01884.12	gi|146304632|ref|YP_001191948.1|	-	0.85	8.8	4.3	7.8	5.6	0.6	2.4	1	1	1	2	2	2	0	PcrB	family
GXGXG	PF01493.14	gi|146304633|ref|YP_001191949.1|	-	2.7e-24	85.2	20.1	1.5e-23	82.8	13.9	2.2	1	1	0	1	1	1	1	GXGXG	motif
GATase_6	PF13522.1	gi|146304633|ref|YP_001191949.1|	-	2.5e-13	50.1	0.0	6.1e-13	48.8	0.0	1.6	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|146304633|ref|YP_001191949.1|	-	7.1e-12	44.7	0.0	1.2e-11	43.9	0.0	1.5	1	1	0	1	1	1	1	Glutamine	amidotransferases	class-II
GATase_7	PF13537.1	gi|146304633|ref|YP_001191949.1|	-	0.00016	21.3	0.0	0.00057	19.6	0.0	1.8	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
DUF3662	PF12401.3	gi|146304633|ref|YP_001191949.1|	-	0.039	14.1	0.0	0.084	13.0	0.0	1.5	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2662)
DRTGG	PF07085.7	gi|146304633|ref|YP_001191949.1|	-	0.092	12.3	0.0	0.2	11.2	0.0	1.5	1	0	0	1	1	1	0	DRTGG	domain
MFS_1	PF07690.11	gi|146304634|ref|YP_001191950.1|	-	0.034	12.8	6.6	0.04	12.6	4.6	1.2	1	0	0	1	1	1	0	Major	Facilitator	Superfamily
TusA	PF01206.12	gi|146304635|ref|YP_001191951.1|	-	0.00052	19.5	0.0	0.00058	19.4	0.0	1.4	1	1	0	1	1	1	1	Sulfurtransferase	TusA
DUF2249	PF10006.4	gi|146304635|ref|YP_001191951.1|	-	0.0054	16.2	0.0	0.0069	15.9	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2249)
Sod_Fe_C	PF02777.13	gi|146304637|ref|YP_001191953.1|	-	2.2e-38	130.3	1.0	4.1e-38	129.4	0.7	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Sod_Fe_N	PF00081.17	gi|146304637|ref|YP_001191953.1|	-	2.9e-27	94.7	0.1	2.9e-27	94.7	0.1	2.2	3	0	0	3	3	3	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
NTP_transferase	PF00483.18	gi|146304638|ref|YP_001191954.1|	-	5.4e-35	120.8	0.0	6.8e-35	120.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.2	gi|146304638|ref|YP_001191954.1|	-	1.2e-11	44.9	0.0	4.6e-11	43.0	0.0	1.8	1	1	0	2	2	2	1	MobA-like	NTP	transferase	domain
Hexapep	PF00132.19	gi|146304638|ref|YP_001191954.1|	-	3.8e-11	41.9	3.8	9.3e-06	24.9	0.2	4.0	1	1	2	3	3	3	2	Bacterial	transferase	hexapeptide	(six	repeats)
Hexapep_2	PF14602.1	gi|146304638|ref|YP_001191954.1|	-	0.089	12.3	12.4	0.56	9.8	0.2	3.5	4	0	0	4	4	4	0	Hexapeptide	repeat	of	succinyl-transferase
IspD	PF01128.14	gi|146304638|ref|YP_001191954.1|	-	0.099	12.1	0.0	0.17	11.3	0.0	1.3	1	0	0	1	1	1	0	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
DUF364	PF04016.7	gi|146304639|ref|YP_001191955.1|	-	7.8e-26	90.1	0.0	1.1e-25	89.6	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF364)
DUF4213	PF13938.1	gi|146304639|ref|YP_001191955.1|	-	1.2e-18	67.0	0.0	2.5e-18	66.0	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4213)
DUF2175	PF09943.4	gi|146304641|ref|YP_001191957.1|	-	6.2e-36	122.4	6.2	7e-36	122.3	4.3	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2175)
Vps39_2	PF10367.4	gi|146304641|ref|YP_001191957.1|	-	0.00013	22.1	1.5	0.00094	19.3	0.1	2.1	2	0	0	2	2	2	1	Vacuolar	sorting	protein	39	domain	2
FliG_N	PF14842.1	gi|146304641|ref|YP_001191957.1|	-	0.011	15.8	1.2	0.014	15.5	0.8	1.2	1	0	0	1	1	1	0	FliG	N-terminal	domain
EMP24_GP25L	PF01105.19	gi|146304641|ref|YP_001191957.1|	-	0.06	13.0	0.7	0.078	12.6	0.5	1.1	1	0	0	1	1	1	0	emp24/gp25L/p24	family/GOLD
EPL1	PF10513.4	gi|146304641|ref|YP_001191957.1|	-	0.078	13.2	0.6	5.7	7.1	0.0	2.1	2	0	0	2	2	2	0	Enhancer	of	polycomb-like
Gly_radical	PF01228.16	gi|146304641|ref|YP_001191957.1|	-	0.11	12.9	0.1	0.16	12.3	0.1	1.3	1	0	0	1	1	1	0	Glycine	radical
PHD	PF00628.24	gi|146304641|ref|YP_001191957.1|	-	0.17	11.6	1.5	1.6	8.5	0.4	2.2	2	0	0	2	2	2	0	PHD-finger
Thy1	PF02511.10	gi|146304642|ref|YP_001191958.1|	-	3.2e-59	199.4	0.6	4.3e-59	199.0	0.4	1.1	1	0	0	1	1	1	1	Thymidylate	synthase	complementing	protein
Oxidored_q4	PF00507.14	gi|146304643|ref|YP_001191959.1|	-	1.1e-05	25.2	1.6	1.5e-05	24.6	1.1	1.3	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase,	chain	3
Complex1_30kDa	PF00329.14	gi|146304644|ref|YP_001191960.1|	-	1.5e-31	108.6	0.0	1.9e-31	108.3	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	30	Kd	subunit
YscJ_FliF	PF01514.12	gi|146304644|ref|YP_001191960.1|	-	0.0014	17.8	0.1	0.0023	17.1	0.1	1.4	2	0	0	2	2	2	1	Secretory	protein	of	YscJ/FliF	family
Complex1_49kDa	PF00346.14	gi|146304645|ref|YP_001191961.1|	-	1.4e-64	217.7	0.0	1.7e-64	217.4	0.0	1.1	1	0	0	1	1	1	1	Respiratory-chain	NADH	dehydrogenase,	49	Kd	subunit
NADHdh	PF00146.16	gi|146304646|ref|YP_001191962.1|	-	7.6e-51	173.0	24.9	2.5e-36	125.3	10.0	2.0	2	0	0	2	2	2	2	NADH	dehydrogenase
Fer4	PF00037.22	gi|146304647|ref|YP_001191963.1|	-	1.4e-12	46.6	17.3	5.7e-07	28.8	2.5	2.7	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_21	PF14697.1	gi|146304647|ref|YP_001191963.1|	-	2.5e-10	40.0	9.6	5.6e-10	38.9	6.6	1.6	1	1	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304647|ref|YP_001191963.1|	-	7.9e-10	38.9	11.5	1.4e-09	38.1	8.0	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304647|ref|YP_001191963.1|	-	5.6e-09	35.6	6.1	1.1e-08	34.7	4.3	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_6	PF12837.2	gi|146304647|ref|YP_001191963.1|	-	1.3e-08	34.3	18.2	0.00018	21.2	2.1	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146304647|ref|YP_001191963.1|	-	4.2e-08	33.3	10.4	7.2e-08	32.5	7.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_16	PF13484.1	gi|146304647|ref|YP_001191963.1|	-	1.5e-06	28.8	8.1	0.00055	20.6	6.5	2.3	1	1	1	2	2	2	2	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|146304647|ref|YP_001191963.1|	-	1.5e-06	28.4	0.8	0.019	15.2	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146304647|ref|YP_001191963.1|	-	5.8e-06	25.9	14.9	0.0014	18.4	1.8	2.9	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.2	gi|146304647|ref|YP_001191963.1|	-	1.6e-05	24.8	9.9	0.011	15.9	1.0	2.2	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_8	PF13183.1	gi|146304647|ref|YP_001191963.1|	-	0.00015	21.7	8.9	0.0022	17.9	7.2	1.9	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_3	PF12798.2	gi|146304647|ref|YP_001191963.1|	-	0.0031	17.9	19.1	0.057	14.0	3.2	2.3	2	0	0	2	2	2	2	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|146304647|ref|YP_001191963.1|	-	0.0051	17.3	11.8	0.044	14.3	1.5	2.4	1	1	1	2	2	2	2	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.1	gi|146304647|ref|YP_001191963.1|	-	0.012	15.9	9.1	0.042	14.2	1.0	2.6	2	0	0	2	2	2	0	4Fe-4S	single	cluster	domain
Fer4_18	PF13746.1	gi|146304647|ref|YP_001191963.1|	-	0.023	15.0	15.4	0.38	11.2	3.0	2.3	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Oxidored_q3	PF00499.15	gi|146304648|ref|YP_001191964.1|	-	1.7e-12	47.2	13.7	1.7e-12	47.2	9.5	1.4	1	1	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
DUF4401	PF14351.1	gi|146304648|ref|YP_001191964.1|	-	0.013	14.5	14.8	0.015	14.3	10.3	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4401)
Oxidored_q2	PF00420.19	gi|146304649|ref|YP_001191965.1|	-	1.5e-12	46.9	8.5	1.7e-12	46.7	5.9	1.0	1	0	0	1	1	1	1	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	4L
DUF3098	PF11297.3	gi|146304649|ref|YP_001191965.1|	-	0.19	11.4	6.1	0.056	13.1	1.9	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3098)
ATP-synt_C	PF00137.16	gi|146304649|ref|YP_001191965.1|	-	0.9	9.4	7.6	3.7	7.5	0.1	2.4	2	1	0	2	2	2	0	ATP	synthase	subunit	C
Oxidored_q1	PF00361.15	gi|146304650|ref|YP_001191966.1|	-	2e-80	269.9	65.4	7.6e-51	172.9	17.5	5.4	5	1	0	5	5	5	3	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
Oxidored_q1_N	PF00662.15	gi|146304650|ref|YP_001191966.1|	-	0.0013	18.2	1.9	0.0013	18.2	1.3	4.4	4	0	0	4	4	4	2	NADH-Ubiquinone	oxidoreductase	(complex	I),	chain	5	N-terminus
Oxidored_q1	PF00361.15	gi|146304651|ref|YP_001191967.1|	-	1.5e-43	149.0	19.5	1.5e-43	149.0	13.5	2.2	2	0	0	2	2	2	1	NADH-Ubiquinone/plastoquinone	(complex	I),	various	chains
DUF754	PF05449.6	gi|146304651|ref|YP_001191967.1|	-	4.3	7.4	11.3	12	6.0	0.1	3.6	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF754)
NAD_binding_5	PF07994.7	gi|146304652|ref|YP_001191968.1|	-	1.6e-38	132.8	0.0	1.1e-37	130.1	0.0	2.1	1	1	0	1	1	1	1	Myo-inositol-1-phosphate	synthase
Inos-1-P_synth	PF01658.12	gi|146304652|ref|YP_001191968.1|	-	3.5e-21	75.1	0.2	7.5e-21	74.0	0.0	1.6	2	0	0	2	2	2	1	Myo-inositol-1-phosphate	synthase
Tweety	PF04906.8	gi|146304653|ref|YP_001191969.1|	-	0.00022	19.8	0.8	0.00032	19.2	0.6	1.1	1	0	0	1	1	1	1	Tweety
SlyX	PF04102.7	gi|146304653|ref|YP_001191969.1|	-	0.004	17.4	0.1	0.008	16.5	0.1	1.5	1	0	0	1	1	1	1	SlyX
IncA	PF04156.9	gi|146304653|ref|YP_001191969.1|	-	0.0075	15.8	0.2	0.013	15.1	0.1	1.3	1	0	0	1	1	1	1	IncA	protein
DUF342	PF03961.8	gi|146304653|ref|YP_001191969.1|	-	0.0076	14.7	0.1	0.012	14.0	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF342)
DUF812	PF05667.6	gi|146304653|ref|YP_001191969.1|	-	0.017	13.6	1.2	0.024	13.1	0.9	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF812)
LXG	PF04740.7	gi|146304653|ref|YP_001191969.1|	-	0.043	13.6	2.8	0.072	12.8	2.0	1.3	1	0	0	1	1	1	0	LXG	domain	of	WXG	superfamily
Laminin_I	PF06008.9	gi|146304653|ref|YP_001191969.1|	-	0.046	13.0	2.3	0.068	12.4	1.6	1.1	1	0	0	1	1	1	0	Laminin	Domain	I
FH2	PF02181.18	gi|146304653|ref|YP_001191969.1|	-	0.072	11.9	0.1	0.11	11.4	0.1	1.1	1	0	0	1	1	1	0	Formin	Homology	2	Domain
ATG16	PF08614.6	gi|146304653|ref|YP_001191969.1|	-	0.079	12.7	0.5	0.12	12.1	0.3	1.2	1	0	0	1	1	1	0	Autophagy	protein	16	(ATG16)
TMF_DNA_bd	PF12329.3	gi|146304653|ref|YP_001191969.1|	-	0.081	12.7	1.8	0.13	12.0	1.3	1.2	1	0	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Med9	PF07544.8	gi|146304653|ref|YP_001191969.1|	-	0.11	12.3	0.0	0.19	11.4	0.0	1.4	1	0	0	1	1	1	0	RNA	polymerase	II	transcription	mediator	complex	subunit	9
FliJ	PF02050.11	gi|146304653|ref|YP_001191969.1|	-	0.76	9.8	3.3	0.71	9.9	0.6	1.9	1	1	1	2	2	2	0	Flagellar	FliJ	protein
DUF3211	PF11485.3	gi|146304654|ref|YP_001191970.1|	-	7.4e-48	162.0	0.7	8.4e-48	161.8	0.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3211)
DNA_pol_B	PF00136.16	gi|146304655|ref|YP_001191971.1|	-	3.2e-92	309.7	6.4	4.2e-92	309.3	4.5	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|146304655|ref|YP_001191971.1|	-	1.5e-28	99.5	5.6	2.1e-28	99.1	0.2	2.3	2	0	0	2	2	2	1	DNA	polymerase	family	B,	exonuclease	domain
DNA_pol_B_exo2	PF10108.4	gi|146304655|ref|YP_001191971.1|	-	1.4e-05	24.7	0.0	5.1e-05	22.8	0.0	1.9	2	0	0	2	2	2	1	Predicted	3'-5'	exonuclease	related	to	the	exonuclease	domain	of	PolB
RNase_H_2	PF13482.1	gi|146304655|ref|YP_001191971.1|	-	1.9e-05	24.5	1.4	5.2e-05	23.1	0.1	2.4	2	1	0	2	2	2	1	RNase_H	superfamily
FlaG	PF03646.10	gi|146304655|ref|YP_001191971.1|	-	0.17	12.0	7.6	1.6	8.9	0.9	3.0	3	0	0	3	3	3	0	FlaG	protein
ACT_6	PF13740.1	gi|146304655|ref|YP_001191971.1|	-	0.18	11.5	0.0	0.71	9.6	0.0	2.0	2	0	0	2	2	2	0	ACT	domain
AAA_23	PF13476.1	gi|146304655|ref|YP_001191971.1|	-	0.54	10.5	7.3	0.043	14.1	0.7	2.4	2	1	0	2	2	2	0	AAA	domain
DUF2286	PF10051.4	gi|146304656|ref|YP_001191972.1|	-	5.5e-56	188.1	7.7	6.4e-56	187.9	5.3	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2286)
DUF1651	PF07864.6	gi|146304656|ref|YP_001191972.1|	-	0.063	13.3	0.2	10	6.3	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1651)
DUF2274	PF10038.4	gi|146304656|ref|YP_001191972.1|	-	0.093	12.8	0.2	0.17	12.0	0.1	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2274)
Chalcone	PF02431.10	gi|146304656|ref|YP_001191972.1|	-	0.22	10.8	2.2	0.27	10.5	0.6	1.7	2	0	0	2	2	2	0	Chalcone-flavanone	isomerase
Methyltransf_18	PF12847.2	gi|146304657|ref|YP_001191973.1|	-	1.3e-12	48.2	0.0	1.7e-12	47.8	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.8	gi|146304657|ref|YP_001191973.1|	-	9e-12	44.7	0.1	1.2e-11	44.3	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_31	PF13847.1	gi|146304657|ref|YP_001191973.1|	-	4.2e-11	42.6	0.1	5.7e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|146304657|ref|YP_001191973.1|	-	2.1e-08	33.6	0.0	2.3e-08	33.4	0.0	1.1	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
Methyltransf_25	PF13649.1	gi|146304657|ref|YP_001191973.1|	-	1.5e-07	31.7	0.0	1.9e-07	31.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
DOT1	PF08123.8	gi|146304657|ref|YP_001191973.1|	-	1.9e-07	30.6	0.2	5.2e-07	29.1	0.2	1.7	1	1	0	1	1	1	1	Histone	methylation	protein	DOT1
Methyltransf_11	PF08241.7	gi|146304657|ref|YP_001191973.1|	-	8.8e-07	29.3	0.0	1.4e-06	28.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146304657|ref|YP_001191973.1|	-	2.4e-06	27.5	0.0	3e-06	27.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
MTS	PF05175.9	gi|146304657|ref|YP_001191973.1|	-	3.8e-06	26.3	0.1	5.3e-06	25.9	0.1	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_12	PF08242.7	gi|146304657|ref|YP_001191973.1|	-	7.6e-06	26.3	0.2	1.2e-05	25.7	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|146304657|ref|YP_001191973.1|	-	6.9e-05	22.4	0.0	0.00011	21.8	0.0	1.2	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_4	PF02390.12	gi|146304657|ref|YP_001191973.1|	-	0.0002	20.4	0.0	0.00024	20.2	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
DUF633	PF04816.7	gi|146304657|ref|YP_001191973.1|	-	0.00027	20.3	0.2	0.00089	18.6	0.0	1.7	1	1	1	2	2	2	1	Family	of	unknown	function	(DUF633)
Ubie_methyltran	PF01209.13	gi|146304657|ref|YP_001191973.1|	-	0.00029	20.0	0.1	0.00037	19.6	0.1	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
MetW	PF07021.7	gi|146304657|ref|YP_001191973.1|	-	0.0024	17.3	0.1	0.0027	17.0	0.0	1.1	1	0	0	1	1	1	1	Methionine	biosynthesis	protein	MetW
N6_Mtase	PF02384.11	gi|146304657|ref|YP_001191973.1|	-	0.003	16.6	0.0	0.004	16.2	0.0	1.2	1	0	0	1	1	1	1	N-6	DNA	Methylase
Methyltransf_23	PF13489.1	gi|146304657|ref|YP_001191973.1|	-	0.0047	16.6	0.1	0.0068	16.1	0.1	1.4	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|146304657|ref|YP_001191973.1|	-	0.05	13.1	0.0	0.051	13.1	0.0	1.2	1	0	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.11	gi|146304657|ref|YP_001191973.1|	-	0.072	12.6	0.1	0.08	12.5	0.1	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
ADH_zinc_N	PF00107.21	gi|146304657|ref|YP_001191973.1|	-	0.11	12.0	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Zinc-binding	dehydrogenase
CDP-OH_P_transf	PF01066.16	gi|146304659|ref|YP_001191975.1|	-	1.3e-13	51.0	4.7	3.1e-13	49.8	3.3	1.7	1	1	0	1	1	1	1	CDP-alcohol	phosphatidyltransferase
ABC_membrane	PF00664.18	gi|146304659|ref|YP_001191975.1|	-	2.5	7.4	8.8	0.16	11.3	0.2	2.5	3	0	0	3	3	3	0	ABC	transporter	transmembrane	region
DNA_primase_lrg	PF04104.9	gi|146304660|ref|YP_001191976.1|	-	2.4e-07	30.2	0.1	0.04	13.1	0.0	3.0	1	1	2	3	3	3	3	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
tRNA-synt_1g	PF09334.6	gi|146304661|ref|YP_001191977.1|	-	3.3e-142	473.7	0.0	4.1e-142	473.4	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|146304661|ref|YP_001191977.1|	-	8.8e-10	37.2	0.0	0.00034	18.7	0.0	3.1	2	1	1	3	3	3	3	tRNA	synthetases	class	I	(I,	L,	M	and	V)
zf-ribbon_3	PF13248.1	gi|146304661|ref|YP_001191977.1|	-	0.0055	15.8	2.4	0.18	11.0	1.7	2.5	1	1	0	1	1	1	1	zinc-ribbon	domain
DZR	PF12773.2	gi|146304661|ref|YP_001191977.1|	-	0.091	12.5	2.8	0.18	11.6	1.9	1.5	1	0	0	1	1	1	0	Double	zinc	ribbon
V_ATPase_I	PF01496.14	gi|146304662|ref|YP_001191978.1|	-	3.1e-64	217.1	4.7	1.2e-63	215.2	3.3	1.9	1	1	0	1	1	1	1	V-type	ATPase	116kDa	subunit	family
ATP-synt_F	PF01990.12	gi|146304663|ref|YP_001191979.1|	-	1.2e-12	48.0	0.1	1.3e-12	47.9	0.1	1.0	1	0	0	1	1	1	1	ATP	synthase	(F/14-kDa)	subunit
vATP-synt_E	PF01991.13	gi|146304664|ref|YP_001191980.1|	-	1.5e-11	43.9	8.1	2.2e-11	43.4	5.6	1.3	1	0	0	1	1	1	1	ATP	synthase	(E/31	kDa)	subunit
DUF1092	PF06485.6	gi|146304664|ref|YP_001191980.1|	-	0.0063	15.4	0.1	0.0082	15.1	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1092)
OSCP	PF00213.13	gi|146304664|ref|YP_001191980.1|	-	0.035	13.9	2.9	0.12	12.2	0.1	2.3	2	0	0	2	2	2	0	ATP	synthase	delta	(OSCP)	subunit
MitMem_reg	PF13012.1	gi|146304664|ref|YP_001191980.1|	-	0.066	13.2	1.2	3.2	7.8	0.0	2.2	2	0	0	2	2	2	0	Maintenance	of	mitochondrial	structure	and	function
DNA_primase_lrg	PF04104.9	gi|146304664|ref|YP_001191980.1|	-	0.15	11.3	0.7	0.23	10.7	0.5	1.3	1	0	0	1	1	1	0	Eukaryotic	and	archaeal	DNA	primase,	large	subunit
ERp29	PF07749.7	gi|146304664|ref|YP_001191980.1|	-	0.15	12.6	7.4	0.087	13.4	3.0	1.9	1	1	1	2	2	2	0	Endoplasmic	reticulum	protein	ERp29,	C-terminal	domain
TBPIP	PF07106.8	gi|146304664|ref|YP_001191980.1|	-	1.2	8.6	7.8	0.57	9.7	3.3	1.8	1	1	0	2	2	2	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
ATP-synt_ab	PF00006.20	gi|146304665|ref|YP_001191981.1|	-	3.3e-87	291.5	0.0	4.7e-87	290.9	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|146304665|ref|YP_001191981.1|	-	3.2e-18	66.2	1.6	6.4e-18	65.2	1.1	1.4	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|146304665|ref|YP_001191981.1|	-	5.8e-11	42.4	2.5	7.9e-11	42.0	0.8	2.0	2	0	0	2	2	2	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
AAA_22	PF13401.1	gi|146304665|ref|YP_001191981.1|	-	0.062	13.4	0.2	0.23	11.6	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Peptidase_M23	PF01551.17	gi|146304665|ref|YP_001191981.1|	-	0.066	13.2	0.0	1.1	9.3	0.0	2.4	2	0	0	2	2	2	0	Peptidase	family	M23
ATP-synt_ab	PF00006.20	gi|146304666|ref|YP_001191982.1|	-	4.1e-60	202.9	0.0	5.5e-60	202.5	0.0	1.2	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
ATP-synt_ab_C	PF00306.22	gi|146304666|ref|YP_001191982.1|	-	1.3e-12	48.1	0.0	2.7e-12	47.1	0.0	1.5	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	chain,	C	terminal	domain
ATP-synt_ab_N	PF02874.18	gi|146304666|ref|YP_001191982.1|	-	6.7e-10	39.0	1.3	1.7e-09	37.7	0.9	1.8	1	0	0	1	1	1	1	ATP	synthase	alpha/beta	family,	beta-barrel	domain
HAS-barrel	PF09378.5	gi|146304666|ref|YP_001191982.1|	-	0.0044	16.8	0.3	0.023	14.6	0.5	2.0	2	0	0	2	2	2	1	HAS	barrel	domain
PfUIS3	PF11567.3	gi|146304666|ref|YP_001191982.1|	-	0.14	12.3	0.0	0.29	11.2	0.0	1.5	1	0	0	1	1	1	0	Plasmodium	falciparum	UIS3	membrane	protein
ATP-synt_D	PF01813.12	gi|146304667|ref|YP_001191983.1|	-	9e-51	172.2	7.6	1e-50	172.0	5.3	1.0	1	0	0	1	1	1	1	ATP	synthase	subunit	D
GPAT_N	PF14829.1	gi|146304667|ref|YP_001191983.1|	-	0.0019	17.8	2.9	0.0064	16.1	0.8	2.5	2	1	1	3	3	3	1	Glycerol-3-phosphate	acyltransferase	N-terminal
MAGE	PF01454.14	gi|146304667|ref|YP_001191983.1|	-	0.021	14.1	0.1	0.026	13.8	0.1	1.3	1	0	0	1	1	1	0	MAGE	family
Orbi_NS1	PF01718.11	gi|146304667|ref|YP_001191983.1|	-	0.029	12.4	0.1	0.04	11.9	0.1	1.2	1	0	0	1	1	1	0	Orbivirus	non-structural	protein	NS1,	or	hydrophobic	tubular	protein
PrkA	PF06798.7	gi|146304667|ref|YP_001191983.1|	-	0.14	11.4	5.8	0.19	10.9	4.0	1.4	1	1	0	1	1	1	0	PrkA	serine	protein	kinase	C-terminal	domain
Phyto_Pns9_10	PF05878.6	gi|146304667|ref|YP_001191983.1|	-	0.35	9.8	2.6	1.1	8.2	0.2	2.0	2	0	0	2	2	2	0	Phytoreovirus	nonstructural	protein	Pns9/Pns10
ATP-synt_C	PF00137.16	gi|146304668|ref|YP_001191984.1|	-	4e-15	55.4	21.1	4e-15	55.4	14.6	1.6	2	0	0	2	2	2	1	ATP	synthase	subunit	C
Nitrate_red_gam	PF02665.9	gi|146304668|ref|YP_001191984.1|	-	0.42	9.9	5.2	0.72	9.1	3.6	1.5	1	1	0	1	1	1	0	Nitrate	reductase	gamma	subunit
tRNA-synt_2b	PF00587.20	gi|146304669|ref|YP_001191985.1|	-	1.9e-24	86.1	0.5	3.4e-24	85.3	0.2	1.6	2	0	0	2	2	2	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|146304669|ref|YP_001191985.1|	-	6.9e-22	77.2	0.1	1.9e-21	75.7	0.1	1.8	1	0	0	1	1	1	1	Anticodon	binding	domain
ProRS-C_1	PF09180.6	gi|146304669|ref|YP_001191985.1|	-	3.6e-18	65.2	0.0	8.1e-18	64.1	0.0	1.6	1	0	0	1	1	1	1	Prolyl-tRNA	synthetase,	C-terminal
tRNA-synt_2	PF00152.15	gi|146304669|ref|YP_001191985.1|	-	0.024	13.4	0.1	0.037	12.8	0.0	1.4	1	0	0	1	1	1	0	tRNA	synthetases	class	II	(D,	K	and	N)
Ribosomal_S26e	PF01283.14	gi|146304670|ref|YP_001191986.1|	-	2.8e-30	104.8	3.5	3.1e-30	104.7	2.4	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S26e
DZR	PF12773.2	gi|146304670|ref|YP_001191986.1|	-	0.11	12.3	0.4	0.11	12.3	0.3	2.1	1	1	0	2	2	2	0	Double	zinc	ribbon
Lar_restr_allev	PF14354.1	gi|146304670|ref|YP_001191986.1|	-	0.13	12.5	0.3	0.13	12.5	0.2	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
zf-dskA_traR	PF01258.12	gi|146304670|ref|YP_001191986.1|	-	0.25	11.1	5.2	0.47	10.2	0.2	2.3	2	0	0	2	2	2	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
SOR_SNZ	PF01680.12	gi|146304671|ref|YP_001191987.1|	-	9e-97	322.7	2.3	1.2e-96	322.2	1.6	1.2	1	0	0	1	1	1	1	SOR/SNZ	family
ThiG	PF05690.9	gi|146304671|ref|YP_001191987.1|	-	2.8e-07	29.8	1.1	3.5e-06	26.2	0.0	2.2	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
IGPS	PF00218.16	gi|146304671|ref|YP_001191987.1|	-	0.00041	19.4	0.0	0.13	11.3	0.0	2.3	2	0	0	2	2	2	2	Indole-3-glycerol	phosphate	synthase
OMPdecase	PF00215.19	gi|146304671|ref|YP_001191987.1|	-	0.00086	18.7	0.0	0.93	8.8	0.0	2.4	1	1	1	2	2	2	2	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
His_biosynth	PF00977.16	gi|146304671|ref|YP_001191987.1|	-	0.0031	16.7	0.7	0.14	11.4	0.0	2.9	2	1	1	3	3	3	2	Histidine	biosynthesis	protein
NMO	PF03060.10	gi|146304671|ref|YP_001191987.1|	-	0.0044	16.2	2.3	0.019	14.1	0.0	2.3	2	0	0	2	2	2	1	Nitronate	monooxygenase
NanE	PF04131.9	gi|146304671|ref|YP_001191987.1|	-	0.0083	15.1	0.1	0.43	9.5	0.0	2.3	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
Dus	PF01207.12	gi|146304671|ref|YP_001191987.1|	-	0.032	13.0	0.2	2.1	7.0	0.0	2.6	2	1	0	2	2	2	0	Dihydrouridine	synthase	(Dus)
SNO	PF01174.14	gi|146304672|ref|YP_001191988.1|	-	1.4e-45	155.2	0.0	1.6e-45	155.0	0.0	1.0	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
GATase_3	PF07685.9	gi|146304672|ref|YP_001191988.1|	-	1.5e-11	44.1	0.1	2.3e-11	43.5	0.1	1.3	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
Peptidase_S51	PF03575.12	gi|146304672|ref|YP_001191988.1|	-	5.9e-08	32.5	0.0	7.9e-08	32.1	0.0	1.2	1	0	0	1	1	1	1	Peptidase	family	S51
GATase	PF00117.23	gi|146304672|ref|YP_001191988.1|	-	2.4e-07	30.4	0.1	5.9e-07	29.1	0.0	1.5	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146304672|ref|YP_001191988.1|	-	0.11	11.9	0.7	1.1	8.6	0.4	2.4	1	1	0	1	1	1	0	Peptidase	C26
T2SE	PF00437.15	gi|146304673|ref|YP_001191989.1|	-	1.8e-10	40.1	0.0	2.9e-10	39.5	0.0	1.3	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
AAA_17	PF13207.1	gi|146304673|ref|YP_001191989.1|	-	9.9e-06	26.3	0.0	3.7e-05	24.5	0.0	2.0	1	0	0	1	1	1	1	AAA	domain
AAA_18	PF13238.1	gi|146304673|ref|YP_001191989.1|	-	0.00021	21.5	0.1	0.00099	19.4	0.0	2.2	2	0	0	2	2	1	1	AAA	domain
AAA_16	PF13191.1	gi|146304673|ref|YP_001191989.1|	-	0.00027	20.9	0.0	0.028	14.4	0.0	2.9	3	0	0	3	3	3	1	AAA	ATPase	domain
RuvB_N	PF05496.7	gi|146304673|ref|YP_001191989.1|	-	0.0018	17.3	0.0	0.0051	15.8	0.0	1.7	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
Zeta_toxin	PF06414.7	gi|146304673|ref|YP_001191989.1|	-	0.0022	17.0	0.0	0.045	12.8	0.0	2.2	2	0	0	2	2	2	1	Zeta	toxin
AAA	PF00004.24	gi|146304673|ref|YP_001191989.1|	-	0.0028	17.8	0.0	0.0087	16.2	0.0	1.9	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
IstB_IS21	PF01695.12	gi|146304673|ref|YP_001191989.1|	-	0.0034	16.8	0.0	0.0077	15.6	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_22	PF13401.1	gi|146304673|ref|YP_001191989.1|	-	0.0047	17.0	0.1	0.06	13.4	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
SRP54	PF00448.17	gi|146304673|ref|YP_001191989.1|	-	0.0069	15.8	0.0	0.012	15.0	0.0	1.4	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
RNA_pol_Rpb5_C	PF01191.14	gi|146304673|ref|YP_001191989.1|	-	0.0079	15.7	0.8	0.034	13.7	0.2	2.4	2	1	1	3	3	3	1	RNA	polymerase	Rpb5,	C-terminal	domain
ArgK	PF03308.11	gi|146304673|ref|YP_001191989.1|	-	0.0085	14.9	0.0	0.048	12.4	0.0	2.0	2	0	0	2	2	2	1	ArgK	protein
AAA_19	PF13245.1	gi|146304673|ref|YP_001191989.1|	-	0.012	15.3	0.0	0.026	14.2	0.0	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
DnaB_C	PF03796.10	gi|146304673|ref|YP_001191989.1|	-	0.013	14.4	0.0	0.027	13.3	0.0	1.5	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
AAA_25	PF13481.1	gi|146304673|ref|YP_001191989.1|	-	0.017	14.4	0.0	0.044	13.1	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|146304673|ref|YP_001191989.1|	-	0.018	15.0	0.0	0.037	14.0	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Sigma54_activ_2	PF14532.1	gi|146304673|ref|YP_001191989.1|	-	0.02	14.9	0.0	0.059	13.4	0.0	1.7	2	0	0	2	2	1	0	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|146304673|ref|YP_001191989.1|	-	0.021	14.4	0.0	0.047	13.2	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|146304673|ref|YP_001191989.1|	-	0.022	14.4	0.1	0.05	13.2	0.1	1.6	1	0	0	1	1	1	0	NACHT	domain
FtsK_SpoIIIE	PF01580.13	gi|146304673|ref|YP_001191989.1|	-	0.026	14.0	0.0	0.047	13.1	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
ABC_tran	PF00005.22	gi|146304673|ref|YP_001191989.1|	-	0.027	14.7	0.0	0.056	13.7	0.0	1.6	1	0	0	1	1	1	0	ABC	transporter
RNA_helicase	PF00910.17	gi|146304673|ref|YP_001191989.1|	-	0.03	14.4	0.0	0.12	12.6	0.0	2.1	2	0	0	2	2	1	0	RNA	helicase
AAA_33	PF13671.1	gi|146304673|ref|YP_001191989.1|	-	0.031	14.1	0.0	0.088	12.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
NTPase_1	PF03266.10	gi|146304673|ref|YP_001191989.1|	-	0.032	13.9	0.0	0.1	12.2	0.0	1.9	1	0	0	1	1	1	0	NTPase
AAA_14	PF13173.1	gi|146304673|ref|YP_001191989.1|	-	0.033	14.1	0.2	0.13	12.1	0.0	2.1	3	0	0	3	3	1	0	AAA	domain
KTI12	PF08433.5	gi|146304673|ref|YP_001191989.1|	-	0.043	13.0	0.0	0.091	11.9	0.0	1.5	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
AAA_5	PF07728.9	gi|146304673|ref|YP_001191989.1|	-	0.064	12.9	0.0	0.14	11.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ATP_bind_1	PF03029.12	gi|146304673|ref|YP_001191989.1|	-	0.07	12.6	0.1	0.13	11.7	0.1	1.4	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
Thymidylate_kin	PF02223.12	gi|146304673|ref|YP_001191989.1|	-	0.076	12.3	0.2	0.25	10.6	0.0	2.0	2	1	0	2	2	2	0	Thymidylate	kinase
RHH_3	PF12651.2	gi|146304673|ref|YP_001191989.1|	-	0.088	12.5	3.5	10	5.9	0.1	3.6	3	0	0	3	3	3	0	Ribbon-helix-helix	domain
Hjc	PF01870.13	gi|146304674|ref|YP_001191990.1|	-	1.2e-25	88.8	0.0	1.6e-25	88.4	0.0	1.2	1	0	0	1	1	1	1	Archaeal	holliday	junction	resolvase	(hjc)
DUF3883	PF13020.1	gi|146304674|ref|YP_001191990.1|	-	0.042	13.5	0.0	0.13	12.0	0.0	1.9	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF3883)
OMPdecase	PF00215.19	gi|146304674|ref|YP_001191990.1|	-	0.074	12.4	0.1	0.14	11.5	0.0	1.6	1	1	0	1	1	1	0	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
IlvN	PF07991.7	gi|146304675|ref|YP_001191991.1|	-	5.6e-73	243.7	0.0	8.3e-73	243.1	0.0	1.3	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
IlvC	PF01450.14	gi|146304675|ref|YP_001191991.1|	-	8.5e-43	145.7	1.4	1.1e-42	145.3	0.9	1.2	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
F420_oxidored	PF03807.12	gi|146304675|ref|YP_001191991.1|	-	2.1e-09	37.6	0.0	9.4e-09	35.5	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_2	PF03446.10	gi|146304675|ref|YP_001191991.1|	-	7.8e-07	29.0	0.0	4.3e-06	26.6	0.0	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
AdoHcyase_NAD	PF00670.16	gi|146304675|ref|YP_001191991.1|	-	8.9e-07	28.8	0.1	2.6e-05	24.1	0.0	2.1	2	0	0	2	2	2	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|146304675|ref|YP_001191991.1|	-	1.9e-06	27.1	0.1	6.6e-06	25.3	0.0	1.8	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
NAD_binding_10	PF13460.1	gi|146304675|ref|YP_001191991.1|	-	1.2e-05	25.4	0.0	2.1e-05	24.6	0.0	1.4	1	0	0	1	1	1	1	NADH(P)-binding
NAD_Gly3P_dh_N	PF01210.18	gi|146304675|ref|YP_001191991.1|	-	7.3e-05	22.5	0.8	0.064	12.9	0.2	3.2	2	1	0	2	2	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
ApbA	PF02558.11	gi|146304675|ref|YP_001191991.1|	-	0.0002	20.8	0.0	0.00046	19.6	0.0	1.6	1	1	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_binding_7	PF13241.1	gi|146304675|ref|YP_001191991.1|	-	0.061	13.5	0.0	0.16	12.2	0.0	1.6	1	0	0	1	1	1	0	Putative	NAD(P)-binding
PDH	PF02153.12	gi|146304675|ref|YP_001191991.1|	-	0.095	11.5	0.0	0.15	10.9	0.0	1.3	1	0	0	1	1	1	0	Prephenate	dehydrogenase
DNAPolymera_Pol	PF11590.3	gi|146304675|ref|YP_001191991.1|	-	0.5	10.0	0.1	0.5	10.0	0.0	2.5	2	0	0	2	2	2	0	DNA	polymerase	catalytic	subunit	Pol
ACT_5	PF13710.1	gi|146304676|ref|YP_001191992.1|	-	2e-12	46.7	0.0	3.2e-12	46.0	0.0	1.3	1	0	0	1	1	1	1	ACT	domain
DUF1506	PF07405.6	gi|146304676|ref|YP_001191992.1|	-	0.059	13.3	0.1	0.21	11.5	0.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1506)
TPP_enzyme_N	PF02776.13	gi|146304677|ref|YP_001191993.1|	-	1.2e-55	187.6	0.1	7.4e-54	181.8	0.0	2.3	2	0	0	2	2	2	1	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.16	gi|146304677|ref|YP_001191993.1|	-	1.5e-44	151.2	0.0	3.5e-44	150.0	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.17	gi|146304677|ref|YP_001191993.1|	-	9e-36	122.6	0.0	2.6e-35	121.1	0.0	1.8	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
POR_N	PF01855.14	gi|146304677|ref|YP_001191993.1|	-	0.002	17.6	0.0	0.0047	16.4	0.0	1.6	2	0	0	2	2	2	1	Pyruvate	flavodoxin/ferredoxin	oxidoreductase,	thiamine	diP-bdg
Acid_PPase	PF12689.2	gi|146304678|ref|YP_001191994.1|	-	1.2e-13	51.0	0.2	2e-13	50.3	0.1	1.4	1	1	0	1	1	1	1	Acid	Phosphatase
HAD_2	PF13419.1	gi|146304678|ref|YP_001191994.1|	-	2.7e-07	30.9	0.4	1.6e-06	28.4	0.1	2.1	1	1	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
NIF	PF03031.13	gi|146304678|ref|YP_001191994.1|	-	9.9e-06	25.3	0.2	1.2e-05	25.0	0.1	1.2	1	0	0	1	1	1	1	NLI	interacting	factor-like	phosphatase
Hydrolase	PF00702.21	gi|146304678|ref|YP_001191994.1|	-	0.00016	22.1	0.1	0.012	16.0	0.0	2.0	1	1	1	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146304678|ref|YP_001191994.1|	-	0.018	15.2	0.1	0.16	12.1	0.1	2.1	1	1	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|146304678|ref|YP_001191994.1|	-	0.078	12.8	0.0	0.17	11.7	0.0	1.5	1	1	0	1	1	1	0	Haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.7	gi|146304678|ref|YP_001191994.1|	-	0.13	11.8	0.0	0.18	11.3	0.0	1.3	1	0	0	1	1	1	0	haloacid	dehalogenase-like	hydrolase
MMR_HSR1	PF01926.18	gi|146304679|ref|YP_001191995.1|	-	1.7e-12	47.3	0.1	8e-10	38.7	0.0	2.2	2	0	0	2	2	2	2	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|146304679|ref|YP_001191995.1|	-	6.8e-06	26.0	2.0	0.00033	20.5	0.4	2.4	2	1	0	2	2	2	1	Dynamin	family
DUF258	PF03193.11	gi|146304679|ref|YP_001191995.1|	-	9.6e-06	24.8	0.0	1.4e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF258
FeoB_N	PF02421.13	gi|146304679|ref|YP_001191995.1|	-	9.8e-05	21.6	0.1	0.027	13.7	0.0	2.2	2	0	0	2	2	2	2	Ferrous	iron	transport	protein	B
ArgK	PF03308.11	gi|146304679|ref|YP_001191995.1|	-	0.0027	16.5	0.3	0.0054	15.5	0.1	1.5	2	0	0	2	2	2	1	ArgK	protein
AAA_17	PF13207.1	gi|146304679|ref|YP_001191995.1|	-	0.016	16.0	0.0	0.04	14.7	0.0	1.8	1	1	0	1	1	1	0	AAA	domain
GTP_EFTU	PF00009.22	gi|146304679|ref|YP_001191995.1|	-	0.017	14.5	0.1	0.34	10.3	0.0	2.4	2	1	0	2	2	2	0	Elongation	factor	Tu	GTP	binding	domain
Miro	PF08477.8	gi|146304679|ref|YP_001191995.1|	-	0.019	15.4	0.1	0.1	13.0	0.0	2.0	2	0	0	2	2	2	0	Miro-like	protein
PduV-EutP	PF10662.4	gi|146304679|ref|YP_001191995.1|	-	0.028	13.8	0.0	0.7	9.3	0.0	2.3	2	1	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Bac_rhamnosid_N	PF08531.5	gi|146304680|ref|YP_001191996.1|	-	0.012	15.1	0.0	0.024	14.1	0.0	1.5	1	0	0	1	1	1	0	Alpha-L-rhamnosidase	N-terminal	domain
CARDB	PF07705.6	gi|146304680|ref|YP_001191996.1|	-	0.014	15.4	0.0	0.051	13.6	0.0	1.9	2	0	0	2	2	2	0	CARDB
DUF1498	PF07385.7	gi|146304680|ref|YP_001191996.1|	-	0.094	11.8	0.0	0.16	11.1	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1498)
UbiA	PF01040.13	gi|146304681|ref|YP_001191997.1|	-	4.3e-36	124.4	16.5	5.8e-36	124.0	11.4	1.2	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF1270	PF06900.6	gi|146304681|ref|YP_001191997.1|	-	0.15	12.2	0.1	0.15	12.2	0.1	2.5	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF1270)
AdoMet_dc	PF02675.10	gi|146304684|ref|YP_001192000.1|	-	3.4e-33	113.7	0.1	3.8e-33	113.5	0.1	1.0	1	0	0	1	1	1	1	S-adenosylmethionine	decarboxylase
DUF211	PF02680.9	gi|146304685|ref|YP_001192001.1|	-	3.7e-36	122.7	3.0	4e-36	122.7	2.0	1.0	1	0	0	1	1	1	1	Uncharacterized	ArCR,	COG1888
ATP_bind_3	PF01171.15	gi|146304686|ref|YP_001192002.1|	-	3.1e-11	43.1	0.0	5.1e-11	42.4	0.0	1.4	1	0	0	1	1	1	1	PP-loop	family
tRNA_Me_trans	PF03054.11	gi|146304686|ref|YP_001192002.1|	-	0.02	13.4	0.0	0.027	13.0	0.0	1.1	1	0	0	1	1	1	0	tRNA	methyl	transferase
NAD_synthase	PF02540.12	gi|146304686|ref|YP_001192002.1|	-	0.022	13.6	0.0	0.033	13.0	0.0	1.3	1	0	0	1	1	1	0	NAD	synthase
PAPS_reduct	PF01507.14	gi|146304686|ref|YP_001192002.1|	-	0.061	13.1	0.0	0.096	12.5	0.0	1.5	1	1	0	1	1	1	0	Phosphoadenosine	phosphosulfate	reductase	family
DZR	PF12773.2	gi|146304686|ref|YP_001192002.1|	-	0.52	10.1	12.7	0.067	13.0	1.1	2.8	3	0	0	3	3	3	0	Double	zinc	ribbon
zf-dskA_traR	PF01258.12	gi|146304686|ref|YP_001192002.1|	-	9.2	6.1	11.6	8.5	6.2	0.9	3.2	3	0	0	3	3	3	0	Prokaryotic	dksA/traR	C4-type	zinc	finger
Cob_adeno_trans	PF01923.13	gi|146304687|ref|YP_001192003.1|	-	3.3e-50	170.0	0.0	3.7e-50	169.8	0.0	1.0	1	0	0	1	1	1	1	Cobalamin	adenosyltransferase
FAP	PF07174.6	gi|146304687|ref|YP_001192003.1|	-	0.0033	16.7	0.0	0.0043	16.4	0.0	1.1	1	0	0	1	1	1	1	Fibronectin-attachment	protein	(FAP)
tRNA-synt_1	PF00133.17	gi|162149625|ref|YP_001192004.2|	-	3.8e-59	200.2	0.1	6.6e-58	196.1	0.0	2.4	1	1	0	1	1	1	1	tRNA	synthetases	class	I	(I,	L,	M	and	V)
Anticodon_1	PF08264.8	gi|162149625|ref|YP_001192004.2|	-	1.4e-26	93.1	0.9	5.5e-26	91.1	0.6	2.1	1	0	0	1	1	1	1	Anticodon-binding	domain	of	tRNA
tRNA-synt_1g	PF09334.6	gi|162149625|ref|YP_001192004.2|	-	2.2e-25	89.1	0.3	2.3e-12	46.3	0.0	3.6	5	0	0	5	5	5	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1e	PF01406.14	gi|162149625|ref|YP_001192004.2|	-	1.5e-12	47.2	0.0	2.6e-05	23.4	0.0	3.1	3	0	0	3	3	3	2	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1_2	PF13603.1	gi|162149625|ref|YP_001192004.2|	-	5.8e-12	45.2	0.1	1.2e-11	44.2	0.1	1.4	1	0	0	1	1	1	1	Leucyl-tRNA	synthetase,	Domain	2
tRNA-synt_1d	PF00750.14	gi|162149625|ref|YP_001192004.2|	-	0.0038	16.0	0.0	0.0076	15.1	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(R)
Aminotran_1_2	PF00155.16	gi|146304690|ref|YP_001192006.1|	-	4.7e-40	137.6	0.0	5.3e-40	137.4	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
HisG	PF01634.13	gi|146304691|ref|YP_001192007.1|	-	1.5e-53	180.7	0.1	2e-53	180.3	0.0	1.1	1	0	0	1	1	1	1	ATP	phosphoribosyltransferase
HisG_C	PF08029.6	gi|146304691|ref|YP_001192007.1|	-	2.9e-20	71.9	1.7	6.7e-20	70.8	1.1	1.6	1	0	0	1	1	1	1	HisG,	C-terminal	domain
NMT1	PF09084.6	gi|146304691|ref|YP_001192007.1|	-	0.0045	16.6	0.1	0.0085	15.7	0.0	1.6	1	1	0	1	1	1	1	NMT1/THI5	like
LysR_substrate	PF03466.15	gi|146304691|ref|YP_001192007.1|	-	0.06	12.4	0.0	0.089	11.8	0.0	1.3	1	0	0	1	1	1	0	LysR	substrate	binding	domain
His_biosynth	PF00977.16	gi|146304692|ref|YP_001192008.1|	-	2.1e-49	167.8	0.3	2.3e-49	167.7	0.2	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
PcrB	PF01884.12	gi|146304692|ref|YP_001192008.1|	-	0.0012	18.1	0.4	0.0024	17.1	0.0	1.6	2	0	0	2	2	2	1	PcrB	family
IGPD	PF00475.13	gi|146304693|ref|YP_001192009.1|	-	1.9e-57	193.1	0.4	3.4e-57	192.3	0.2	1.4	2	0	0	2	2	2	1	Imidazoleglycerol-phosphate	dehydratase
His_biosynth	PF00977.16	gi|146304694|ref|YP_001192010.1|	-	1.4e-84	282.9	1.9	1.6e-84	282.7	1.3	1.0	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
ThiG	PF05690.9	gi|146304694|ref|YP_001192010.1|	-	1e-07	31.3	1.0	0.001	18.1	0.2	2.1	1	1	1	2	2	2	2	Thiazole	biosynthesis	protein	ThiG
Dus	PF01207.12	gi|146304694|ref|YP_001192010.1|	-	1.6e-07	30.4	0.1	0.0067	15.2	0.0	2.2	1	1	1	2	2	2	2	Dihydrouridine	synthase	(Dus)
PcrB	PF01884.12	gi|146304694|ref|YP_001192010.1|	-	0.00011	21.5	0.4	0.00052	19.3	0.0	2.1	2	1	1	3	3	3	1	PcrB	family
TMP-TENI	PF02581.12	gi|146304694|ref|YP_001192010.1|	-	0.00017	20.7	0.1	0.22	10.6	0.0	2.2	2	0	0	2	2	2	2	Thiamine	monophosphate	synthase/TENI
NMO	PF03060.10	gi|146304694|ref|YP_001192010.1|	-	0.0014	17.8	2.4	0.27	10.3	0.7	2.2	1	1	1	2	2	2	2	Nitronate	monooxygenase
DHO_dh	PF01180.16	gi|146304694|ref|YP_001192010.1|	-	0.015	14.2	0.0	0.14	11.0	0.0	2.0	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
IMPDH	PF00478.20	gi|146304694|ref|YP_001192010.1|	-	0.036	12.9	0.2	0.35	9.7	0.0	2.0	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
FMN_dh	PF01070.13	gi|146304694|ref|YP_001192010.1|	-	0.13	11.0	2.0	0.19	10.5	0.0	2.1	2	1	1	3	3	3	0	FMN-dependent	dehydrogenase
Histidinol_dh	PF00815.15	gi|146304695|ref|YP_001192011.1|	-	1.5e-117	392.7	0.4	1.1e-116	389.8	0.3	1.8	1	1	0	1	1	1	1	Histidinol	dehydrogenase
PRA-PH	PF01503.12	gi|146304696|ref|YP_001192012.1|	-	7.3e-14	51.8	0.1	8e-14	51.6	0.1	1.0	1	0	0	1	1	1	1	Phosphoribosyl-ATP	pyrophosphohydrolase
MazG	PF03819.12	gi|146304696|ref|YP_001192012.1|	-	0.0028	17.5	0.5	0.0045	16.9	0.4	1.3	1	0	0	1	1	1	1	MazG	nucleotide	pyrophosphohydrolase	domain
E1_dh	PF00676.15	gi|146304696|ref|YP_001192012.1|	-	0.12	11.0	0.0	0.13	10.9	0.0	1.0	1	0	0	1	1	1	0	Dehydrogenase	E1	component
GATase	PF00117.23	gi|146304697|ref|YP_001192013.1|	-	1.7e-25	89.5	0.0	2e-25	89.4	0.0	1.0	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
GATase_3	PF07685.9	gi|146304697|ref|YP_001192013.1|	-	1.1e-06	28.2	0.0	1.7e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
PRA-CH	PF01502.13	gi|146304698|ref|YP_001192014.1|	-	3e-32	110.0	0.0	4.2e-32	109.5	0.0	1.2	1	0	0	1	1	1	1	Phosphoribosyl-AMP	cyclohydrolase
DUF1492	PF07374.6	gi|146304698|ref|YP_001192014.1|	-	0.073	13.1	0.1	0.1	12.6	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1492)
DUF59	PF01883.14	gi|146304699|ref|YP_001192015.1|	-	4.1e-17	61.9	0.2	5.9e-17	61.4	0.2	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF59
YqhG	PF11079.3	gi|146304699|ref|YP_001192015.1|	-	0.014	14.2	0.0	0.035	12.9	0.0	1.6	2	0	0	2	2	2	0	Bacterial	protein	YqhG	of	unknown	function
tRNA-synt_2b	PF00587.20	gi|146304700|ref|YP_001192016.1|	-	5.6e-36	123.7	0.0	1e-35	122.8	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
Seryl_tRNA_N	PF02403.17	gi|146304700|ref|YP_001192016.1|	-	1.3e-21	76.5	10.3	3.2e-21	75.3	7.1	1.6	1	0	0	1	1	1	1	Seryl-tRNA	synthetase	N-terminal	domain
tRNA-synt_His	PF13393.1	gi|146304700|ref|YP_001192016.1|	-	0.0094	15.0	2.0	0.33	9.9	0.0	2.2	2	0	0	2	2	2	1	Histidyl-tRNA	synthetase
APG6	PF04111.7	gi|146304700|ref|YP_001192016.1|	-	0.01	14.8	6.0	0.048	12.7	3.1	2.1	2	0	0	2	2	2	0	Autophagy	protein	Apg6
DUF342	PF03961.8	gi|146304700|ref|YP_001192016.1|	-	0.011	14.1	0.6	0.019	13.3	0.4	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
ALIX_LYPXL_bnd	PF13949.1	gi|146304700|ref|YP_001192016.1|	-	0.095	11.6	6.3	0.11	11.4	3.6	1.6	2	0	0	2	2	2	0	ALIX	V-shaped	domain	binding	to	HIV
Spectrin	PF00435.16	gi|146304700|ref|YP_001192016.1|	-	0.11	12.7	5.8	0.21	11.8	0.8	2.5	1	1	1	2	2	2	0	Spectrin	repeat
OmpH	PF03938.9	gi|146304700|ref|YP_001192016.1|	-	0.13	12.1	2.3	0.69	9.8	0.6	2.5	2	1	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
IncA	PF04156.9	gi|146304700|ref|YP_001192016.1|	-	3.5	7.1	5.9	6.6	6.2	4.1	1.4	1	0	0	1	1	1	0	IncA	protein
Radical_SAM	PF04055.16	gi|146304701|ref|YP_001192017.1|	-	3.1e-17	63.2	0.0	6.9e-17	62.1	0.0	1.6	1	0	0	1	1	1	1	Radical	SAM	superfamily
RNA_POL_M_15KD	PF02150.11	gi|146304703|ref|YP_001192019.1|	-	1.6e-07	30.8	0.3	3.7e-07	29.7	0.2	1.7	1	0	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
zf-TFIIB	PF13453.1	gi|146304703|ref|YP_001192019.1|	-	0.0093	15.1	0.1	0.017	14.2	0.1	1.5	1	0	0	1	1	1	1	Transcription	factor	zinc-finger
DUF2387	PF09526.5	gi|146304703|ref|YP_001192019.1|	-	0.038	13.8	0.3	0.054	13.4	0.2	1.5	1	1	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
zf-NADH-PPase	PF09297.6	gi|146304703|ref|YP_001192019.1|	-	0.09	12.3	0.3	0.9	9.1	0.2	2.3	1	1	0	1	1	1	0	NADH	pyrophosphatase	zinc	ribbon	domain
FYDLN_acid	PF09538.5	gi|146304703|ref|YP_001192019.1|	-	0.35	11.4	4.1	0.44	11.1	2.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(FYDLN_acid)
AsnC_trans_reg	PF01037.16	gi|146304704|ref|YP_001192020.1|	-	4.7e-18	64.6	0.8	6.9e-18	64.1	0.6	1.3	1	0	0	1	1	1	1	AsnC	family
HTH_24	PF13412.1	gi|146304704|ref|YP_001192020.1|	-	9.8e-12	44.0	0.9	8.7e-11	41.0	0.3	2.4	3	0	0	3	3	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.1	gi|146304704|ref|YP_001192020.1|	-	3.6e-09	36.0	2.5	2.3e-08	33.4	2.6	1.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304704|ref|YP_001192020.1|	-	5e-06	26.0	0.6	1e-05	25.1	0.4	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.7	gi|146304704|ref|YP_001192020.1|	-	8.8e-05	22.0	0.2	0.00019	21.0	0.2	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_23	PF13384.1	gi|146304704|ref|YP_001192020.1|	-	9.7e-05	21.8	0.0	0.00018	21.0	0.0	1.4	1	0	0	1	1	1	1	Homeodomain-like	domain
Rrf2	PF02082.15	gi|146304704|ref|YP_001192020.1|	-	0.0044	17.0	0.3	0.048	13.7	0.0	2.4	3	0	0	3	3	3	1	Transcriptional	regulator
MarR	PF01047.17	gi|146304704|ref|YP_001192020.1|	-	0.0052	16.4	0.3	0.033	13.8	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_20	PF12840.2	gi|146304704|ref|YP_001192020.1|	-	0.0067	16.2	0.7	0.011	15.4	0.5	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|146304704|ref|YP_001192020.1|	-	0.0096	15.8	0.3	0.032	14.1	0.0	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
TrmB	PF01978.14	gi|146304704|ref|YP_001192020.1|	-	0.0098	15.5	0.4	0.025	14.2	0.1	1.8	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.16	gi|146304704|ref|YP_001192020.1|	-	0.012	15.0	0.3	0.022	14.2	0.2	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.1	gi|146304704|ref|YP_001192020.1|	-	0.015	15.6	0.1	0.037	14.3	0.1	1.8	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_Tnp_ISL3	PF13542.1	gi|146304704|ref|YP_001192020.1|	-	0.019	14.1	0.2	0.035	13.3	0.1	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_10	PF04967.7	gi|146304704|ref|YP_001192020.1|	-	0.024	14.2	0.0	0.045	13.3	0.0	1.4	1	0	0	1	1	1	0	HTH	DNA	binding	domain
HTH_DeoR	PF08220.7	gi|146304704|ref|YP_001192020.1|	-	0.026	14.0	1.2	0.062	12.8	0.1	2.1	3	0	0	3	3	3	0	DeoR-like	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|146304704|ref|YP_001192020.1|	-	0.028	14.0	0.4	0.05	13.2	0.3	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
TetR_C_9	PF14514.1	gi|146304704|ref|YP_001192020.1|	-	0.034	13.9	0.0	0.061	13.1	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator,	TetR,	C-terminal
HTH_5	PF01022.15	gi|146304704|ref|YP_001192020.1|	-	0.038	13.6	0.5	0.082	12.5	0.3	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Sulfolobus_pRN	PF05584.6	gi|146304704|ref|YP_001192020.1|	-	0.052	13.5	0.5	0.13	12.1	0.1	1.8	2	0	0	2	2	2	0	Sulfolobus	plasmid	regulatory	protein
HTH_28	PF13518.1	gi|146304704|ref|YP_001192020.1|	-	0.055	13.4	0.0	0.096	12.7	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
ALAD	PF00490.16	gi|146304704|ref|YP_001192020.1|	-	0.058	12.2	0.2	0.092	11.6	0.2	1.3	1	0	0	1	1	1	0	Delta-aminolevulinic	acid	dehydratase
Dabb	PF07876.7	gi|146304704|ref|YP_001192020.1|	-	0.1	13.0	0.0	0.14	12.5	0.0	1.5	1	1	0	1	1	1	0	Stress	responsive	A/B	Barrel	Domain
HTH_8	PF02954.14	gi|146304704|ref|YP_001192020.1|	-	0.11	12.0	0.1	0.21	11.1	0.1	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
LZ_Tnp_IS481	PF13011.1	gi|146304704|ref|YP_001192020.1|	-	0.11	12.8	0.1	0.21	11.9	0.1	1.4	1	0	0	1	1	1	0	leucine-zipper	of	insertion	element	IS481
MarC	PF01914.12	gi|146304705|ref|YP_001192021.1|	-	2e-32	111.9	16.9	2.3e-32	111.7	11.7	1.0	1	0	0	1	1	1	1	MarC	family	integral	membrane	protein
LysE	PF01810.13	gi|146304705|ref|YP_001192021.1|	-	0.65	9.2	12.4	23	4.2	8.6	2.4	1	1	0	1	1	1	0	LysE	type	translocator
DUF2651	PF10852.3	gi|146304705|ref|YP_001192021.1|	-	1.9	8.9	8.7	0.26	11.6	0.4	2.8	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2651)
DUF972	PF06156.8	gi|146304706|ref|YP_001192022.1|	-	0.00024	21.4	3.8	0.00024	21.4	2.6	1.9	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF972)
bZIP_2	PF07716.10	gi|146304706|ref|YP_001192022.1|	-	0.00057	19.6	0.6	0.00057	19.6	0.4	2.1	3	0	0	3	3	2	1	Basic	region	leucine	zipper
bZIP_1	PF00170.16	gi|146304706|ref|YP_001192022.1|	-	0.0046	16.8	1.4	0.0046	16.8	0.9	2.5	2	1	1	3	3	3	1	bZIP	transcription	factor
DivIVA	PF05103.8	gi|146304706|ref|YP_001192022.1|	-	0.019	15.0	2.1	0.019	15.0	1.5	1.8	1	1	1	2	2	2	0	DivIVA	protein
HALZ	PF02183.13	gi|146304706|ref|YP_001192022.1|	-	0.026	14.2	1.1	0.026	14.2	0.7	2.1	2	0	0	2	2	2	0	Homeobox	associated	leucine	zipper
DivIC	PF04977.10	gi|146304706|ref|YP_001192022.1|	-	0.029	13.8	4.4	0.058	12.8	0.8	2.4	2	1	0	2	2	2	0	Septum	formation	initiator
PHTB1_C	PF14728.1	gi|146304706|ref|YP_001192022.1|	-	0.033	12.9	1.1	0.034	12.9	0.7	1.1	1	0	0	1	1	1	0	PTHB1	C-terminus
DUF904	PF06005.7	gi|146304706|ref|YP_001192022.1|	-	0.034	14.4	12.1	18	5.7	8.4	2.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF904)
Mnd1	PF03962.10	gi|146304706|ref|YP_001192022.1|	-	0.059	13.0	4.5	0.084	12.5	3.1	1.3	1	0	0	1	1	1	0	Mnd1	family
HAP1_N	PF04849.8	gi|146304706|ref|YP_001192022.1|	-	0.068	12.1	8.8	0.094	11.6	5.9	1.4	1	1	0	1	1	1	0	HAP1	N-terminal	conserved	region
CCDC155	PF14662.1	gi|146304706|ref|YP_001192022.1|	-	0.11	12.1	7.7	0.15	11.6	5.3	1.3	1	1	0	1	1	1	0	Coiled-coil	region	of	CCDC155
V_ATPase_I	PF01496.14	gi|146304706|ref|YP_001192022.1|	-	0.12	10.1	5.4	0.14	9.9	3.7	1.1	1	0	0	1	1	1	0	V-type	ATPase	116kDa	subunit	family
COG5	PF10392.4	gi|146304706|ref|YP_001192022.1|	-	0.15	12.0	6.9	0.22	11.4	4.5	1.5	1	1	0	1	1	1	0	Golgi	transport	complex	subunit	5
DUF3287	PF11690.3	gi|146304706|ref|YP_001192022.1|	-	0.22	11.6	2.8	0.19	11.7	0.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3287)
PNPase	PF03726.9	gi|146304706|ref|YP_001192022.1|	-	0.28	11.4	5.8	1.9	8.8	0.6	2.7	1	1	2	3	3	3	0	Polyribonucleotide	nucleotidyltransferase,	RNA	binding	domain
TMF_DNA_bd	PF12329.3	gi|146304706|ref|YP_001192022.1|	-	0.29	10.9	10.3	2.5	7.9	5.8	2.4	1	1	0	1	1	1	0	TATA	element	modulatory	factor	1	DNA	binding
Prefoldin	PF02996.12	gi|146304706|ref|YP_001192022.1|	-	0.33	10.6	0.1	0.33	10.6	0.1	2.2	3	0	0	3	3	2	0	Prefoldin	subunit
APG6	PF04111.7	gi|146304706|ref|YP_001192022.1|	-	0.55	9.2	8.4	0.62	9.0	5.8	1.1	1	0	0	1	1	1	0	Autophagy	protein	Apg6
YgaB	PF14182.1	gi|146304706|ref|YP_001192022.1|	-	0.84	9.9	5.0	1.4	9.2	2.4	2.0	1	1	1	2	2	2	0	YgaB-like	protein
Syntaxin-6_N	PF09177.6	gi|146304706|ref|YP_001192022.1|	-	1.1	9.7	4.6	11	6.5	3.3	2.2	1	1	0	1	1	1	0	Syntaxin	6,	N-terminal
DUF342	PF03961.8	gi|146304706|ref|YP_001192022.1|	-	1.4	7.2	5.5	1.6	7.0	3.8	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF342)
RabGAP-TBC	PF00566.13	gi|146304706|ref|YP_001192022.1|	-	1.7	8.1	6.2	6.6	6.1	0.6	2.1	1	1	1	2	2	2	0	Rab-GTPase-TBC	domain
IncA	PF04156.9	gi|146304706|ref|YP_001192022.1|	-	3.8	7.0	9.4	6.8	6.2	6.5	1.5	1	1	0	1	1	1	0	IncA	protein
Tropomyosin_1	PF12718.2	gi|146304706|ref|YP_001192022.1|	-	5.8	6.7	13.4	4.1	7.2	1.2	2.0	1	1	0	1	1	1	0	Tropomyosin	like
TBPIP	PF07106.8	gi|146304706|ref|YP_001192022.1|	-	9	5.8	9.4	4.5	6.7	2.4	1.9	1	1	0	1	1	1	0	Tat	binding	protein	1(TBP-1)-interacting	protein	(TBPIP)
DHO_dh	PF01180.16	gi|146304708|ref|YP_001192024.1|	-	8.2e-46	156.2	0.2	3.6e-45	154.1	0.1	1.8	1	1	0	1	1	1	1	Dihydroorotate	dehydrogenase
PcrB	PF01884.12	gi|146304708|ref|YP_001192024.1|	-	0.0038	16.5	0.8	0.031	13.5	0.1	2.5	3	0	0	3	3	3	1	PcrB	family
Amidohydro_1	PF01979.15	gi|146304709|ref|YP_001192025.1|	-	7.9e-14	52.0	0.0	1.4e-07	31.4	0.0	2.1	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|146304709|ref|YP_001192025.1|	-	6.5e-13	49.3	0.0	2e-08	34.6	0.0	2.2	2	0	0	2	2	2	2	Amidohydrolase
Amidohydro_3	PF07969.6	gi|146304709|ref|YP_001192025.1|	-	4.1e-05	22.9	0.0	0.082	12.1	0.0	2.3	2	0	0	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|146304709|ref|YP_001192025.1|	-	0.036	13.8	0.0	0.07	12.9	0.0	1.5	1	0	0	1	1	1	0	Amidohydrolase
DHODB_Fe-S_bind	PF10418.4	gi|146304710|ref|YP_001192026.1|	-	0.0011	18.4	3.7	0.0021	17.4	2.5	1.5	1	0	0	1	1	1	1	Iron-sulfur	cluster	binding	domain	of	dihydroorotate	dehydrogenase	B
PyrI	PF01948.13	gi|146304711|ref|YP_001192027.1|	-	3.4e-36	123.1	2.1	4.6e-36	122.7	1.4	1.2	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	allosteric	domain
PyrI_C	PF02748.10	gi|146304711|ref|YP_001192027.1|	-	3.5e-17	61.5	0.6	5.3e-17	60.9	0.4	1.3	1	0	0	1	1	1	1	Aspartate	carbamoyltransferase	regulatory	chain,	metal	binding	domain
zf-U1	PF06220.7	gi|146304711|ref|YP_001192027.1|	-	0.11	12.0	0.1	0.2	11.2	0.1	1.4	1	0	0	1	1	1	0	U1	zinc	finger
OTCace_N	PF02729.16	gi|146304712|ref|YP_001192028.1|	-	6.3e-41	139.3	0.0	9.5e-41	138.7	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	carbamoyl-P	binding	domain
OTCace	PF00185.19	gi|146304712|ref|YP_001192028.1|	-	1.8e-26	92.9	0.0	2.8e-26	92.2	0.0	1.3	1	0	0	1	1	1	1	Aspartate/ornithine	carbamoyltransferase,	Asp/Orn	binding	domain
Pribosyltran	PF00156.22	gi|146304713|ref|YP_001192029.1|	-	9.7e-18	64.0	1.7	3.5e-17	62.2	1.2	1.9	1	1	0	1	1	1	1	Phosphoribosyl	transferase	domain
OMPdecase	PF00215.19	gi|146304714|ref|YP_001192030.1|	-	1.4e-21	76.9	0.0	1.9e-21	76.5	0.0	1.2	1	0	0	1	1	1	1	Orotidine	5'-phosphate	decarboxylase	/	HUMPS	family
PhoU	PF01895.14	gi|146304716|ref|YP_001192032.1|	-	6.7e-27	93.7	7.8	1.3e-17	63.9	1.8	2.3	2	0	0	2	2	2	2	PhoU	domain
Antitoxin-MazE	PF04014.13	gi|146304716|ref|YP_001192032.1|	-	3e-12	45.9	0.1	5.5e-12	45.1	0.0	1.5	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
Baculo_PEP_C	PF04513.7	gi|146304717|ref|YP_001192033.1|	-	0.028	14.2	0.3	0.041	13.7	0.2	1.3	1	0	0	1	1	1	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF2443	PF10398.4	gi|146304717|ref|YP_001192033.1|	-	0.15	11.8	1.1	0.23	11.2	0.1	1.8	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2443)
LAGLIDADG_WhiA	PF14527.1	gi|146304717|ref|YP_001192033.1|	-	0.24	11.2	2.4	0.94	9.3	0.5	2.2	1	1	1	2	2	2	0	WhiA	LAGLIDADG-like	domain
HTH_5	PF01022.15	gi|146304718|ref|YP_001192034.1|	-	3.9e-09	36.0	0.1	6.6e-09	35.3	0.1	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_20	PF12840.2	gi|146304718|ref|YP_001192034.1|	-	1.3e-05	24.9	0.0	1.9e-05	24.3	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
TrmB	PF01978.14	gi|146304718|ref|YP_001192034.1|	-	0.0047	16.5	0.0	0.0078	15.9	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146304718|ref|YP_001192034.1|	-	0.019	14.3	0.3	0.033	13.5	0.2	1.3	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
DUF2089	PF09862.4	gi|146304718|ref|YP_001192034.1|	-	0.042	13.6	0.1	0.14	11.9	0.0	1.7	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2089)
HTH_45	PF14947.1	gi|146304718|ref|YP_001192034.1|	-	0.13	12.1	0.2	0.18	11.6	0.1	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
Pyr_redox_2	PF07992.9	gi|146304719|ref|YP_001192035.1|	-	5.4e-40	137.4	0.9	9.4e-40	136.6	0.6	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146304719|ref|YP_001192035.1|	-	1.8e-25	89.1	0.2	4e-25	87.9	0.2	1.6	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox	PF00070.22	gi|146304719|ref|YP_001192035.1|	-	1.4e-24	86.2	9.2	1.6e-19	70.0	0.0	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146304719|ref|YP_001192035.1|	-	9.4e-12	44.4	12.6	2.4e-08	33.2	3.2	3.8	3	2	0	3	3	3	3	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|146304719|ref|YP_001192035.1|	-	4e-11	42.3	10.9	2.7e-07	29.7	3.2	3.4	3	1	0	3	3	3	3	FAD	binding	domain
Pyr_redox_3	PF13738.1	gi|146304719|ref|YP_001192035.1|	-	9.7e-11	42.1	0.2	4.2e-10	40.0	0.0	1.9	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146304719|ref|YP_001192035.1|	-	8.3e-10	37.7	7.5	4.1e-05	22.2	0.6	4.1	4	0	0	4	4	4	3	HI0933-like	protein
DAO	PF01266.19	gi|146304719|ref|YP_001192035.1|	-	2e-09	36.8	13.8	4.7e-08	32.3	1.8	3.8	4	0	0	4	4	4	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|146304719|ref|YP_001192035.1|	-	1.3e-08	34.3	4.3	1.4e-08	34.3	0.8	2.2	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304719|ref|YP_001192035.1|	-	2.9e-08	33.6	3.2	0.00075	19.4	1.0	2.5	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
FAD_binding_3	PF01494.14	gi|146304719|ref|YP_001192035.1|	-	6.3e-06	25.4	1.1	0.0016	17.5	0.2	2.3	2	0	0	2	2	2	2	FAD	binding	domain
AlaDh_PNT_C	PF01262.16	gi|146304719|ref|YP_001192035.1|	-	7.1e-06	25.6	1.5	0.059	12.9	0.0	2.4	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Lycopene_cycl	PF05834.7	gi|146304719|ref|YP_001192035.1|	-	5e-05	22.3	3.4	0.01	14.7	0.1	2.9	2	1	1	3	3	3	2	Lycopene	cyclase	protein
Trp_halogenase	PF04820.9	gi|146304719|ref|YP_001192035.1|	-	0.00029	19.5	2.5	0.034	12.7	0.2	2.4	2	0	0	2	2	2	2	Tryptophan	halogenase
Thi4	PF01946.12	gi|146304719|ref|YP_001192035.1|	-	0.00069	18.7	0.9	0.14	11.1	0.4	2.6	2	0	0	2	2	2	1	Thi4	family
3HCDH_N	PF02737.13	gi|146304719|ref|YP_001192035.1|	-	0.00094	18.8	0.4	0.4	10.2	0.0	2.5	2	0	0	2	2	2	2	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
K_oxygenase	PF13434.1	gi|146304719|ref|YP_001192035.1|	-	0.0046	15.9	0.0	0.021	13.7	0.0	1.9	2	0	0	2	2	2	1	L-lysine	6-monooxygenase	(NADPH-requiring)
NAD_binding_7	PF13241.1	gi|146304719|ref|YP_001192035.1|	-	0.0062	16.7	1.7	0.92	9.8	0.2	2.5	2	0	0	2	2	2	1	Putative	NAD(P)-binding
TrkA_N	PF02254.13	gi|146304719|ref|YP_001192035.1|	-	0.015	15.3	5.4	1.7	8.6	0.0	3.6	3	1	0	3	3	2	0	TrkA-N	domain
NAD_binding_9	PF13454.1	gi|146304719|ref|YP_001192035.1|	-	0.25	11.1	4.4	5.3	6.7	0.1	3.2	3	0	0	3	3	3	0	FAD-NAD(P)-binding
TYW3	PF02676.9	gi|146304721|ref|YP_001192037.1|	-	4.5e-41	140.2	0.0	5.4e-41	139.9	0.0	1.0	1	0	0	1	1	1	1	Methyltransferase	TYW3
Fer4_14	PF13394.1	gi|146304722|ref|YP_001192038.1|	-	1.1e-18	67.4	0.0	1.7e-18	66.7	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
Radical_SAM	PF04055.16	gi|146304722|ref|YP_001192038.1|	-	8.2e-15	55.3	0.0	3.2e-14	53.4	0.0	1.9	1	1	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146304722|ref|YP_001192038.1|	-	6.5e-10	39.2	0.0	1e-09	38.6	0.0	1.3	1	0	0	1	1	1	1	4Fe-4S	single	cluster	domain
MMR_HSR1	PF01926.18	gi|146304723|ref|YP_001192039.1|	-	2.3e-19	69.4	0.0	4.2e-19	68.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
FeoB_N	PF02421.13	gi|146304723|ref|YP_001192039.1|	-	2.5e-17	62.6	0.0	4.1e-17	61.9	0.0	1.4	1	0	0	1	1	1	1	Ferrous	iron	transport	protein	B
NOG1	PF06858.9	gi|146304723|ref|YP_001192039.1|	-	4.1e-15	55.3	0.0	7.6e-15	54.5	0.0	1.5	1	0	0	1	1	1	1	Nucleolar	GTP-binding	protein	1	(NOG1)
GTP_EFTU	PF00009.22	gi|146304723|ref|YP_001192039.1|	-	6.2e-06	25.7	0.1	0.0025	17.2	0.1	2.9	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
Miro	PF08477.8	gi|146304723|ref|YP_001192039.1|	-	8.7e-06	26.2	0.0	1.7e-05	25.2	0.0	1.5	1	0	0	1	1	1	1	Miro-like	protein
Gtr1_RagA	PF04670.7	gi|146304723|ref|YP_001192039.1|	-	0.00014	21.0	0.0	0.00021	20.4	0.0	1.3	1	0	0	1	1	1	1	Gtr1/RagA	G	protein	conserved	region
ATP_bind_1	PF03029.12	gi|146304723|ref|YP_001192039.1|	-	0.00021	20.9	0.0	0.39	10.2	0.0	2.3	2	0	0	2	2	2	2	Conserved	hypothetical	ATP	binding	protein
AIG1	PF04548.11	gi|146304723|ref|YP_001192039.1|	-	0.00021	20.4	0.0	0.00033	19.8	0.0	1.3	1	0	0	1	1	1	1	AIG1	family
NTPase_1	PF03266.10	gi|146304723|ref|YP_001192039.1|	-	0.00096	18.8	0.0	0.0024	17.5	0.0	1.9	1	1	0	1	1	1	1	NTPase
MobB	PF03205.9	gi|146304723|ref|YP_001192039.1|	-	0.001	18.7	0.0	0.0022	17.7	0.0	1.5	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Dynamin_N	PF00350.18	gi|146304723|ref|YP_001192039.1|	-	0.0013	18.5	0.2	0.032	14.0	0.0	2.3	1	1	1	2	2	2	1	Dynamin	family
AAA_17	PF13207.1	gi|146304723|ref|YP_001192039.1|	-	0.0078	17.0	0.0	0.017	15.8	0.0	1.7	2	0	0	2	2	1	1	AAA	domain
AAA	PF00004.24	gi|146304723|ref|YP_001192039.1|	-	0.0086	16.2	0.1	0.054	13.6	0.1	2.1	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DUF258	PF03193.11	gi|146304723|ref|YP_001192039.1|	-	0.036	13.2	0.2	0.41	9.8	0.1	2.4	2	1	0	2	2	2	0	Protein	of	unknown	function,	DUF258
AAA_18	PF13238.1	gi|146304723|ref|YP_001192039.1|	-	0.044	14.0	0.0	0.089	13.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
AAA_25	PF13481.1	gi|146304723|ref|YP_001192039.1|	-	0.074	12.4	0.0	0.2	11.0	0.0	1.7	1	1	0	1	1	1	0	AAA	domain
ArgK	PF03308.11	gi|146304723|ref|YP_001192039.1|	-	0.076	11.7	0.2	1.5	7.5	0.1	2.4	2	0	0	2	2	2	0	ArgK	protein
AAA_16	PF13191.1	gi|146304723|ref|YP_001192039.1|	-	0.079	12.9	0.1	0.35	10.8	0.1	2.1	1	1	0	1	1	1	0	AAA	ATPase	domain
Arch_ATPase	PF01637.13	gi|146304723|ref|YP_001192039.1|	-	0.086	12.5	0.0	1.4	8.5	0.0	2.4	3	0	0	3	3	3	0	Archaeal	ATPase
SRPRB	PF09439.5	gi|146304723|ref|YP_001192039.1|	-	0.15	11.3	0.1	0.34	10.1	0.0	1.7	2	0	0	2	2	2	0	Signal	recognition	particle	receptor	beta	subunit
tRNA_bind	PF01588.15	gi|146304724|ref|YP_001192040.1|	-	6.4e-28	96.4	0.1	7.4e-28	96.2	0.1	1.0	1	0	0	1	1	1	1	Putative	tRNA	binding	domain
SAICAR_synt	PF01259.13	gi|146304725|ref|YP_001192041.1|	-	4.8e-53	179.8	0.1	5.7e-53	179.5	0.0	1.0	1	0	0	1	1	1	1	SAICAR	synthetase
PurS	PF02700.9	gi|146304726|ref|YP_001192042.1|	-	1.3e-15	57.0	0.2	1.5e-15	56.8	0.2	1.0	1	0	0	1	1	1	1	Phosphoribosylformylglycinamidine	(FGAM)	synthase
DpnD-PcfM	PF14207.1	gi|146304726|ref|YP_001192042.1|	-	3.4	7.4	4.8	1.7	8.4	0.2	2.7	4	0	0	4	4	4	0	DpnD/PcfM-like	protein
GATase_5	PF13507.1	gi|146304727|ref|YP_001192043.1|	-	2.1e-45	154.6	0.0	2.5e-45	154.4	0.0	1.0	1	0	0	1	1	1	1	CobB/CobQ-like	glutamine	amidotransferase	domain
DJ-1_PfpI	PF01965.19	gi|146304727|ref|YP_001192043.1|	-	6.8e-10	38.5	0.0	1.1e-09	37.8	0.0	1.3	1	1	0	1	1	1	1	DJ-1/PfpI	family
GATase_3	PF07685.9	gi|146304727|ref|YP_001192043.1|	-	1.4e-08	34.4	0.0	3.4e-08	33.2	0.0	1.6	2	0	0	2	2	2	1	CobB/CobQ-like	glutamine	amidotransferase	domain
GATase	PF00117.23	gi|146304727|ref|YP_001192043.1|	-	1.3e-07	31.3	0.0	1.5e-07	31.0	0.0	1.3	1	1	0	1	1	1	1	Glutamine	amidotransferase	class-I
DUF4066	PF13278.1	gi|146304727|ref|YP_001192043.1|	-	3.8e-05	23.0	0.0	5.2e-05	22.5	0.0	1.2	1	0	0	1	1	1	1	Putative	amidotransferase
SNO	PF01174.14	gi|146304727|ref|YP_001192043.1|	-	7.5e-05	22.4	0.0	0.00013	21.6	0.0	1.3	1	0	0	1	1	1	1	SNO	glutamine	amidotransferase	family
Peptidase_C26	PF07722.8	gi|146304727|ref|YP_001192043.1|	-	0.043	13.2	0.2	0.089	12.2	0.1	1.6	1	1	0	1	1	1	0	Peptidase	C26
AIRS_C	PF02769.17	gi|146304728|ref|YP_001192044.1|	-	1.8e-37	128.7	1.2	4.7e-25	88.3	0.0	2.3	2	0	0	2	2	2	2	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|146304728|ref|YP_001192044.1|	-	5.6e-37	125.8	0.9	3e-23	81.8	0.1	2.5	2	0	0	2	2	2	2	AIR	synthase	related	protein,	N-terminal	domain
GATase_2	PF00310.16	gi|146304729|ref|YP_001192045.1|	-	3e-15	55.8	0.0	3.1e-07	29.4	0.0	3.3	1	1	1	3	3	3	3	Glutamine	amidotransferases	class-II
Pribosyltran	PF00156.22	gi|146304729|ref|YP_001192045.1|	-	3.4e-14	52.6	0.1	7e-14	51.6	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
GATase_6	PF13522.1	gi|146304729|ref|YP_001192045.1|	-	3.5e-11	43.1	0.0	9.1e-11	41.8	0.0	1.7	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_7	PF13537.1	gi|146304729|ref|YP_001192045.1|	-	7.5e-10	38.6	0.0	4.3e-09	36.1	0.0	2.1	1	1	0	1	1	1	1	Glutamine	amidotransferase	domain
PRTase_2	PF15609.1	gi|146304729|ref|YP_001192045.1|	-	0.04	13.2	0.0	0.068	12.4	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase
GATase_4	PF13230.1	gi|146304729|ref|YP_001192045.1|	-	0.065	11.9	0.0	0.17	10.5	0.0	1.7	2	0	0	2	2	2	0	Glutamine	amidotransferases	class-II
DUF881	PF05949.7	gi|146304729|ref|YP_001192045.1|	-	0.07	12.5	0.1	0.21	11.0	0.0	1.7	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF881)
Pribosyltran	PF00156.22	gi|146304730|ref|YP_001192046.1|	-	1.1e-16	60.6	0.1	2.5e-16	59.5	0.1	1.5	1	0	0	1	1	1	1	Phosphoribosyl	transferase	domain
PRTase_2	PF15609.1	gi|146304730|ref|YP_001192046.1|	-	0.0011	18.2	0.1	0.0026	17.0	0.0	1.6	1	1	0	1	1	1	1	Phosphoribosyl	transferase
GATase_7	PF13537.1	gi|146304730|ref|YP_001192046.1|	-	0.0027	17.4	0.0	0.0052	16.5	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_2	PF00310.16	gi|146304730|ref|YP_001192046.1|	-	0.009	14.7	0.0	0.16	10.6	0.0	2.1	2	0	0	2	2	2	1	Glutamine	amidotransferases	class-II
Pribosyl_synth	PF14572.1	gi|146304730|ref|YP_001192046.1|	-	0.017	14.9	0.0	1.5	8.5	0.0	2.3	2	0	0	2	2	2	0	Phosphoribosyl	synthetase-associated	domain
GATase_6	PF13522.1	gi|146304730|ref|YP_001192046.1|	-	0.077	12.9	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Glutamine	amidotransferase	domain
NTR	PF01759.16	gi|146304730|ref|YP_001192046.1|	-	0.14	11.7	0.1	0.25	10.9	0.1	1.4	1	0	0	1	1	1	0	UNC-6/NTR/C345C	module
GARS_A	PF01071.14	gi|146304731|ref|YP_001192047.1|	-	5.1e-40	137.1	0.0	7.7e-40	136.5	0.0	1.3	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
GARS_N	PF02844.10	gi|146304731|ref|YP_001192047.1|	-	2.6e-26	91.9	0.0	4.9e-26	91.1	0.0	1.5	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	N	domain
GARS_C	PF02843.11	gi|146304731|ref|YP_001192047.1|	-	7.5e-12	45.2	0.0	2.1e-11	43.8	0.0	1.8	1	0	0	1	1	1	1	Phosphoribosylglycinamide	synthetase,	C	domain
ATP-grasp_4	PF13535.1	gi|146304731|ref|YP_001192047.1|	-	4.2e-10	39.6	0.0	8.4e-10	38.6	0.0	1.5	1	0	0	1	1	1	1	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146304731|ref|YP_001192047.1|	-	8.4e-06	24.7	0.0	1.2e-05	24.2	0.0	1.2	1	0	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
CPSase_L_D2	PF02786.12	gi|146304731|ref|YP_001192047.1|	-	0.0018	17.6	0.0	0.0032	16.7	0.0	1.4	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp_3	PF02655.9	gi|146304731|ref|YP_001192047.1|	-	0.0061	16.4	0.0	0.012	15.4	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
DUF448	PF04296.8	gi|146304731|ref|YP_001192047.1|	-	0.019	14.5	0.0	0.042	13.4	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF448)
ATPgrasp_ST	PF14397.1	gi|146304731|ref|YP_001192047.1|	-	0.13	11.3	0.1	0.19	10.7	0.0	1.2	1	0	0	1	1	1	0	Sugar-transfer	associated	ATP-grasp
Dala_Dala_lig_C	PF07478.8	gi|146304731|ref|YP_001192047.1|	-	0.14	11.5	0.5	0.35	10.2	0.4	1.6	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
AIRS_C	PF02769.17	gi|146304732|ref|YP_001192048.1|	-	8.1e-23	81.1	0.0	1.4e-22	80.3	0.0	1.3	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|146304732|ref|YP_001192048.1|	-	9.3e-17	61.0	0.1	1.9e-16	60.1	0.1	1.5	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
DUF3505	PF12013.3	gi|146304733|ref|YP_001192049.1|	-	0.0025	18.0	0.4	0.0048	17.1	0.3	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3505)
PapB	PF03333.8	gi|146304733|ref|YP_001192049.1|	-	0.0049	16.6	0.1	0.042	13.6	0.0	2.2	1	1	1	2	2	2	1	Adhesin	biosynthesis	transcription	regulatory	protein
AAA_13	PF13166.1	gi|146304733|ref|YP_001192049.1|	-	0.017	13.6	0.0	0.019	13.4	0.0	1.0	1	0	0	1	1	1	0	AAA	domain
Ig_2	PF13895.1	gi|146304733|ref|YP_001192049.1|	-	0.041	14.0	0.0	0.055	13.6	0.0	1.2	1	0	0	1	1	1	0	Immunoglobulin	domain
DUF3222	PF11519.3	gi|146304733|ref|YP_001192049.1|	-	0.081	12.8	0.1	0.14	12.1	0.0	1.5	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3222)
RHH_1	PF01402.16	gi|146304734|ref|YP_001192050.1|	-	0.028	14.2	0.0	0.18	11.7	0.0	1.9	2	0	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Arginosuc_synth	PF00764.14	gi|146304735|ref|YP_001192051.1|	-	3.2e-141	470.8	0.0	3.8e-141	470.6	0.0	1.0	1	0	0	1	1	1	1	Arginosuccinate	synthase
QueC	PF06508.8	gi|146304735|ref|YP_001192051.1|	-	5.8e-05	22.4	0.1	0.00037	19.8	0.1	2.0	1	1	0	1	1	1	1	Queuosine	biosynthesis	protein	QueC
Asn_synthase	PF00733.16	gi|146304735|ref|YP_001192051.1|	-	0.0088	15.5	0.0	0.013	15.0	0.0	1.3	1	0	0	1	1	1	1	Asparagine	synthase
tRNA_Me_trans	PF03054.11	gi|146304735|ref|YP_001192051.1|	-	0.1	11.1	0.0	0.17	10.4	0.0	1.4	1	0	0	1	1	1	0	tRNA	methyl	transferase
Lyase_1	PF00206.15	gi|146304736|ref|YP_001192052.1|	-	5e-37	127.7	0.0	7.2e-37	127.2	0.0	1.2	1	0	0	1	1	1	1	Lyase
ASL_C2	PF14698.1	gi|146304736|ref|YP_001192052.1|	-	0.00015	21.7	0.0	0.00075	19.5	0.0	2.2	2	0	0	2	2	2	1	Argininosuccinate	lyase	C-terminal
Glycolytic	PF00274.14	gi|146304736|ref|YP_001192052.1|	-	0.1	10.9	0.0	0.59	8.4	0.0	2.1	3	0	0	3	3	3	0	Fructose-bisphosphate	aldolase	class-I
CPSase_sm_chain	PF00988.17	gi|146304737|ref|YP_001192053.1|	-	1.6e-46	157.0	0.0	2.4e-46	156.4	0.0	1.2	1	0	0	1	1	1	1	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
GATase	PF00117.23	gi|146304737|ref|YP_001192053.1|	-	1.8e-39	135.2	0.0	3e-39	134.4	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	class-I
Peptidase_C26	PF07722.8	gi|146304737|ref|YP_001192053.1|	-	2e-06	27.3	0.1	0.00046	19.6	0.1	2.3	1	1	0	1	1	1	1	Peptidase	C26
CPSase_L_D2	PF02786.12	gi|146304738|ref|YP_001192054.1|	-	1.4e-99	331.6	0.0	1.4e-68	230.3	0.0	2.4	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
CPSase_L_D3	PF02787.14	gi|146304738|ref|YP_001192054.1|	-	2.7e-34	117.5	0.0	9e-34	115.8	0.0	1.9	2	0	0	2	2	2	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
CPSase_L_chain	PF00289.17	gi|146304738|ref|YP_001192054.1|	-	3.4e-33	114.0	0.0	8.3e-20	70.9	0.0	2.5	2	0	0	2	2	2	2	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
ATP-grasp_4	PF13535.1	gi|146304738|ref|YP_001192054.1|	-	6.3e-31	107.5	0.0	2.4e-14	53.5	0.0	2.2	2	0	0	2	2	2	2	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146304738|ref|YP_001192054.1|	-	1.3e-23	83.2	0.0	3.5e-13	49.0	0.0	3.8	3	1	0	3	3	3	3	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp	PF02222.17	gi|146304738|ref|YP_001192054.1|	-	6.5e-20	71.1	0.0	2.1e-11	43.4	0.0	2.3	2	0	0	2	2	2	2	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|146304738|ref|YP_001192054.1|	-	1.1e-15	57.5	0.1	7.4e-08	32.0	0.0	2.6	2	1	0	2	2	2	2	D-ala	D-ala	ligase	C-terminus
RimK	PF08443.6	gi|146304738|ref|YP_001192054.1|	-	7.5e-13	48.3	0.0	8e-08	31.9	0.0	3.0	2	1	0	2	2	2	2	RimK-like	ATP-grasp	domain
ATP-grasp_3	PF02655.9	gi|146304738|ref|YP_001192054.1|	-	2.6e-09	37.1	0.2	0.00026	20.9	0.0	2.6	2	1	0	2	2	2	2	ATP-grasp	domain
GARS_A	PF01071.14	gi|146304738|ref|YP_001192054.1|	-	3.4e-07	30.0	0.1	0.0081	15.7	0.0	3.2	2	1	0	2	2	2	2	Phosphoribosylglycinamide	synthetase,	ATP-grasp	(A)	domain
ATP-grasp_5	PF13549.1	gi|146304738|ref|YP_001192054.1|	-	3e-06	26.6	0.0	0.0045	16.2	0.0	2.9	2	0	0	2	2	2	2	ATP-grasp	domain
MGS	PF02142.17	gi|146304738|ref|YP_001192054.1|	-	7e-05	22.6	0.0	0.0091	15.9	0.0	3.0	2	0	0	2	2	2	1	MGS-like	domain
ATP-grasp_2	PF08442.5	gi|146304738|ref|YP_001192054.1|	-	0.0072	15.7	0.0	0.062	12.6	0.0	2.3	2	0	0	2	2	2	1	ATP-grasp	domain
RimK	PF08443.6	gi|146304739|ref|YP_001192055.1|	-	6.4e-41	139.9	0.0	6.2e-40	136.7	0.0	1.9	2	0	0	2	2	2	1	RimK-like	ATP-grasp	domain
ATPgrasp_Ter	PF15632.1	gi|146304739|ref|YP_001192055.1|	-	1e-09	37.6	0.0	2.1e-09	36.6	0.0	1.5	1	1	0	1	1	1	1	ATP-grasp	in	the	biosynthetic	pathway	with	Ter	operon
ATP-grasp_3	PF02655.9	gi|146304739|ref|YP_001192055.1|	-	4.9e-09	36.2	0.0	9.4e-09	35.3	0.0	1.4	1	0	0	1	1	1	1	ATP-grasp	domain
GSH-S_ATP	PF02955.11	gi|146304739|ref|YP_001192055.1|	-	1.1e-08	34.4	0.0	2.2e-08	33.4	0.0	1.5	1	0	0	1	1	1	1	Prokaryotic	glutathione	synthetase,	ATP-grasp	domain
ATP-grasp_4	PF13535.1	gi|146304739|ref|YP_001192055.1|	-	1.6e-08	34.5	0.0	2.3e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	ATP-grasp	domain
Dala_Dala_lig_C	PF07478.8	gi|146304739|ref|YP_001192055.1|	-	0.012	15.0	0.1	0.34	10.2	0.1	2.3	1	1	0	1	1	1	0	D-ala	D-ala	ligase	C-terminus
ATP-grasp_5	PF13549.1	gi|146304739|ref|YP_001192055.1|	-	0.071	12.3	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	ATP-grasp	domain
CPSase_L_D2	PF02786.12	gi|146304739|ref|YP_001192055.1|	-	0.095	11.9	0.0	0.19	11.0	0.0	1.5	1	0	0	1	1	1	0	Carbamoyl-phosphate	synthase	L	chain,	ATP	binding	domain
ATP-grasp	PF02222.17	gi|146304739|ref|YP_001192055.1|	-	0.11	11.8	0.0	0.25	10.6	0.0	1.6	2	0	0	2	2	2	0	ATP-grasp	domain
Translin	PF01997.11	gi|146304740|ref|YP_001192056.1|	-	4.1e-28	98.3	0.0	6.3e-28	97.7	0.0	1.2	1	0	0	1	1	1	1	Translin	family
COG5	PF10392.4	gi|146304740|ref|YP_001192056.1|	-	0.0035	17.3	0.4	0.0059	16.5	0.2	1.3	1	0	0	1	1	1	1	Golgi	transport	complex	subunit	5
4HB_MCP_1	PF12729.2	gi|146304740|ref|YP_001192056.1|	-	0.013	14.8	0.2	2.1	7.6	0.1	2.2	2	0	0	2	2	2	0	Four	helix	bundle	sensory	module	for	signal	transduction
DegS	PF05384.6	gi|146304740|ref|YP_001192056.1|	-	0.014	14.6	1.2	0.062	12.5	0.8	2.2	1	1	0	1	1	1	0	Sensor	protein	DegS
FliJ	PF02050.11	gi|146304740|ref|YP_001192056.1|	-	0.062	13.3	0.5	0.062	13.3	0.3	1.6	2	0	0	2	2	2	0	Flagellar	FliJ	protein
DUF2183	PF09949.4	gi|146304740|ref|YP_001192056.1|	-	0.085	12.7	0.0	2.3	8.1	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2183)
PhoU	PF01895.14	gi|146304740|ref|YP_001192056.1|	-	0.55	10.7	3.9	1.3	9.5	0.1	2.6	2	1	1	3	3	3	0	PhoU	domain
3HCDH_N	PF02737.13	gi|146304741|ref|YP_001192057.1|	-	7.4e-55	185.3	0.6	1.2e-54	184.7	0.4	1.3	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
3HCDH	PF00725.17	gi|146304741|ref|YP_001192057.1|	-	4.9e-18	65.3	0.2	1.2e-17	64.0	0.1	1.7	1	0	0	1	1	1	1	3-hydroxyacyl-CoA	dehydrogenase,	C-terminal	domain
NAD_Gly3P_dh_N	PF01210.18	gi|146304741|ref|YP_001192057.1|	-	2.5e-08	33.7	0.3	4.4e-08	33.0	0.2	1.5	1	1	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_2	PF03446.10	gi|146304741|ref|YP_001192057.1|	-	1.2e-07	31.6	0.2	1.4e-06	28.2	0.1	2.2	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Pyr_redox	PF00070.22	gi|146304741|ref|YP_001192057.1|	-	2.7e-05	24.4	1.0	0.00013	22.2	0.1	2.5	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
UDPG_MGDP_dh_N	PF03721.9	gi|146304741|ref|YP_001192057.1|	-	0.00094	18.6	0.3	0.0019	17.6	0.2	1.6	1	0	0	1	1	1	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
F420_oxidored	PF03807.12	gi|146304741|ref|YP_001192057.1|	-	0.034	14.5	0.4	0.14	12.6	0.1	2.2	2	2	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ApbA	PF02558.11	gi|146304741|ref|YP_001192057.1|	-	0.049	13.0	0.1	0.12	11.8	0.0	1.8	2	0	0	2	2	2	0	Ketopantoate	reductase	PanE/ApbA
GIDA	PF01134.17	gi|146304741|ref|YP_001192057.1|	-	0.057	12.2	0.0	0.083	11.7	0.0	1.3	1	0	0	1	1	1	0	Glucose	inhibited	division	protein	A
NAD_binding_7	PF13241.1	gi|146304741|ref|YP_001192057.1|	-	0.065	13.4	1.0	0.14	12.4	0.1	1.9	2	0	0	2	2	2	0	Putative	NAD(P)-binding
2-Hacid_dh_C	PF02826.14	gi|146304741|ref|YP_001192057.1|	-	0.081	12.0	0.2	0.34	10.0	0.0	2.0	2	0	0	2	2	2	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Hema_stalk	PF08720.5	gi|146304741|ref|YP_001192057.1|	-	0.096	12.1	0.1	0.16	11.5	0.1	1.3	1	0	0	1	1	1	0	Influenza	C	hemagglutinin	stalk
Cupin_2	PF07883.6	gi|146304742|ref|YP_001192058.1|	-	1.2e-14	53.5	0.6	1.7e-14	53.0	0.4	1.2	1	0	0	1	1	1	1	Cupin	domain
Cupin_1	PF00190.17	gi|146304742|ref|YP_001192058.1|	-	3.1e-12	46.1	0.2	7.5e-12	44.8	0.1	1.5	1	1	0	1	1	1	1	Cupin
AraC_binding	PF02311.14	gi|146304742|ref|YP_001192058.1|	-	1.6e-09	37.5	0.1	2.3e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
CENP-C_C	PF11699.3	gi|146304742|ref|YP_001192058.1|	-	1.1e-06	28.5	0.1	2e-06	27.6	0.0	1.4	2	0	0	2	2	2	1	Mif2/CENP-C	like
MannoseP_isomer	PF01050.13	gi|146304742|ref|YP_001192058.1|	-	0.00029	20.4	0.3	0.00052	19.6	0.0	1.5	2	0	0	2	2	2	1	Mannose-6-phosphate	isomerase
Asp_Arg_Hydrox	PF05118.10	gi|146304742|ref|YP_001192058.1|	-	0.00071	19.4	0.0	0.0013	18.5	0.0	1.5	1	1	0	1	1	1	1	Aspartyl/Asparaginyl	beta-hydroxylase
ARD	PF03079.9	gi|146304742|ref|YP_001192058.1|	-	0.0044	16.9	0.1	0.0095	15.8	0.0	1.5	1	0	0	1	1	1	1	ARD/ARD'	family
Auxin_BP	PF02041.11	gi|146304742|ref|YP_001192058.1|	-	0.026	13.9	0.5	0.17	11.3	0.1	2.2	2	1	0	2	2	2	0	Auxin	binding	protein
Cupin_6	PF12852.2	gi|146304742|ref|YP_001192058.1|	-	0.04	13.5	0.0	0.057	13.0	0.0	1.2	1	0	0	1	1	1	0	Cupin
VIT1	PF01988.14	gi|146304743|ref|YP_001192059.1|	-	5.8e-14	52.0	13.7	1.1e-12	47.9	9.5	1.9	1	1	0	1	1	1	1	VIT	family
DUF360	PF04020.8	gi|146304743|ref|YP_001192059.1|	-	0.32	11.3	7.4	0.052	13.8	1.0	2.1	2	0	0	2	2	2	0	Membrane	protein	of	unknown	function
CarboxypepD_reg	PF13620.1	gi|146304744|ref|YP_001192060.1|	-	0.0011	18.9	2.1	0.0056	16.7	0.3	2.1	2	0	0	2	2	2	1	Carboxypeptidase	regulatory-like	domain
Y_Y_Y	PF07495.8	gi|146304744|ref|YP_001192060.1|	-	0.0042	16.8	1.6	0.41	10.4	0.0	3.0	2	1	1	3	3	3	1	Y_Y_Y	domain
Big_3_4	PF13754.1	gi|146304744|ref|YP_001192060.1|	-	0.064	13.5	4.7	1.9	8.8	0.2	2.7	2	1	1	3	3	3	0	Bacterial	Ig-like	domain	(group	3)
Alginate_exp	PF13372.1	gi|146304744|ref|YP_001192060.1|	-	0.067	11.7	0.4	0.088	11.4	0.2	1.1	1	0	0	1	1	1	0	Alginate	export
FtsL	PF04999.8	gi|146304744|ref|YP_001192060.1|	-	0.14	11.8	0.1	0.23	11.1	0.1	1.3	1	0	0	1	1	1	0	Cell	division	protein	FtsL
Adenosine_kin	PF04008.9	gi|146304745|ref|YP_001192061.1|	-	2.2e-77	257.8	0.1	2.4e-77	257.7	0.1	1.0	1	0	0	1	1	1	1	Adenosine	specific	kinase
DUF309	PF03745.9	gi|146304746|ref|YP_001192062.1|	-	1.2e-16	59.9	0.2	1.6e-16	59.4	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF309)
Radical_SAM	PF04055.16	gi|146304747|ref|YP_001192063.1|	-	1.3e-14	54.7	0.0	2.8e-14	53.6	0.0	1.5	1	0	0	1	1	1	1	Radical	SAM	superfamily
Fer4_12	PF13353.1	gi|146304747|ref|YP_001192063.1|	-	0.0017	18.5	0.0	0.0046	17.0	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
DZR	PF12773.2	gi|146304747|ref|YP_001192063.1|	-	0.0086	15.8	0.1	0.0086	15.8	0.1	2.8	3	0	0	3	3	3	1	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.7	gi|146304747|ref|YP_001192063.1|	-	0.13	11.6	4.2	0.46	9.8	1.1	2.9	2	1	0	2	2	2	0	TFIIB	zinc-binding
zf-ISL3	PF14690.1	gi|146304747|ref|YP_001192063.1|	-	0.2	11.7	0.1	0.2	11.7	0.0	3.5	3	1	1	4	4	4	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-ribbon_3	PF13248.1	gi|146304747|ref|YP_001192063.1|	-	0.24	10.6	6.7	0.51	9.6	2.3	2.9	2	1	2	4	4	4	0	zinc-ribbon	domain
zinc_ribbon_2	PF13240.1	gi|146304747|ref|YP_001192063.1|	-	0.94	9.0	9.8	1.1	8.8	0.2	3.0	3	0	0	3	3	3	0	zinc-ribbon	domain
RseC_MucC	PF04246.7	gi|146304748|ref|YP_001192064.1|	-	0.21	11.1	0.6	0.33	10.5	0.4	1.4	1	0	0	1	1	1	0	Positive	regulator	of	sigma(E),	RseC/MucC
ECH	PF00378.15	gi|146304749|ref|YP_001192065.1|	-	1.2e-80	270.2	0.0	1.3e-80	270.0	0.0	1.0	1	0	0	1	1	1	1	Enoyl-CoA	hydratase/isomerase	family
ECH_C	PF13766.1	gi|146304749|ref|YP_001192065.1|	-	0.00034	20.7	0.0	0.00073	19.6	0.0	1.5	1	0	0	1	1	1	1	2-enoyl-CoA	Hydratase	C-terminal	region
SDH_sah	PF01972.11	gi|146304749|ref|YP_001192065.1|	-	0.048	12.4	0.0	0.3	9.8	0.0	1.9	2	0	0	2	2	2	0	Serine	dehydrogenase	proteinase
UbiA	PF01040.13	gi|146304750|ref|YP_001192066.1|	-	1.5e-29	102.9	21.8	1.9e-29	102.6	15.1	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
DUF2269	PF10027.4	gi|146304750|ref|YP_001192066.1|	-	0.54	10.0	10.6	0.36	10.6	2.4	2.6	2	1	0	2	2	2	0	Predicted	integral	membrane	protein	(DUF2269)
DUF3487	PF11990.3	gi|146304750|ref|YP_001192066.1|	-	0.54	9.6	0.0	0.54	9.6	0.0	3.0	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF3487)
DUF3318	PF11780.3	gi|146304750|ref|YP_001192066.1|	-	5.6	6.5	7.1	1.1	8.8	0.2	2.4	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3318)
Homoserine_dh	PF00742.14	gi|146304751|ref|YP_001192067.1|	-	1.4e-54	184.4	0.2	3.4e-54	183.2	0.0	1.7	2	0	0	2	2	2	1	Homoserine	dehydrogenase
NAD_binding_3	PF03447.11	gi|146304751|ref|YP_001192067.1|	-	1.8e-11	44.4	0.5	2.9e-10	40.5	0.0	2.4	3	0	0	3	3	3	1	Homoserine	dehydrogenase,	NAD	binding	domain
B3_4	PF03483.12	gi|146304752|ref|YP_001192068.1|	-	6.2e-29	100.6	0.0	8.5e-29	100.2	0.0	1.2	1	0	0	1	1	1	1	B3/4	domain
NikR_C	PF08753.6	gi|146304753|ref|YP_001192069.1|	-	1.6e-19	69.5	0.7	2.9e-19	68.7	0.5	1.4	1	0	0	1	1	1	1	NikR	C	terminal	nickel	binding	domain
RHH_1	PF01402.16	gi|146304753|ref|YP_001192069.1|	-	2.2e-08	33.6	2.1	2.2e-08	33.6	1.4	2.3	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_3	PF12651.2	gi|146304753|ref|YP_001192069.1|	-	0.00031	20.4	2.3	0.00033	20.3	0.2	1.9	2	0	0	2	2	2	1	Ribbon-helix-helix	domain
Condensation	PF00668.15	gi|146304753|ref|YP_001192069.1|	-	0.0013	17.6	0.0	0.0021	16.9	0.0	1.3	1	1	0	1	1	1	1	Condensation	domain
RHH_4	PF13467.1	gi|146304753|ref|YP_001192069.1|	-	0.037	13.8	0.3	0.11	12.3	0.0	1.9	2	1	0	2	2	2	0	Ribbon-helix-helix	domain
PmbA_TldD	PF01523.11	gi|146304754|ref|YP_001192070.1|	-	6.3e-44	150.4	0.8	7.6e-44	150.1	0.5	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
PmbA_TldD	PF01523.11	gi|146304755|ref|YP_001192071.1|	-	5.9e-48	163.6	3.0	7.8e-48	163.2	2.1	1.1	1	0	0	1	1	1	1	Putative	modulator	of	DNA	gyrase
Usp	PF00582.21	gi|146304756|ref|YP_001192072.1|	-	4.4e-37	127.4	0.7	4.9e-37	127.2	0.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Oxidored_nitro	PF00148.14	gi|146304756|ref|YP_001192072.1|	-	0.076	11.6	0.0	0.096	11.3	0.0	1.1	1	0	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
Pyr_redox_2	PF07992.9	gi|146304757|ref|YP_001192073.1|	-	1.7e-28	99.9	0.0	2.8e-28	99.1	0.0	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146304757|ref|YP_001192073.1|	-	7.9e-21	74.2	1.5	3.2e-13	49.8	0.1	3.4	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146304757|ref|YP_001192073.1|	-	7.3e-15	54.9	0.0	2.4e-14	53.2	0.0	1.9	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
GIDA	PF01134.17	gi|146304757|ref|YP_001192073.1|	-	1.1e-12	47.5	8.1	0.00018	20.4	0.2	4.0	3	1	0	3	3	3	2	Glucose	inhibited	division	protein	A
Pyr_redox_3	PF13738.1	gi|146304757|ref|YP_001192073.1|	-	1.6e-10	41.3	0.0	3.2e-10	40.4	0.0	1.5	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304757|ref|YP_001192073.1|	-	1.7e-10	40.7	1.9	1.6e-06	28.0	0.1	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
HI0933_like	PF03486.9	gi|146304757|ref|YP_001192073.1|	-	1.2e-07	30.5	2.2	2e-06	26.5	0.1	2.5	2	1	0	2	2	2	1	HI0933-like	protein
FAD_oxidored	PF12831.2	gi|146304757|ref|YP_001192073.1|	-	2.3e-07	30.2	0.6	5e-07	29.1	0.4	1.7	1	1	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|146304757|ref|YP_001192073.1|	-	1.3e-06	27.5	6.4	2.2e-06	26.7	0.2	2.8	3	0	0	3	3	3	1	FAD	binding	domain
FAD_binding_3	PF01494.14	gi|146304757|ref|YP_001192073.1|	-	1.6e-06	27.4	1.1	0.0006	18.9	0.1	2.2	2	0	0	2	2	2	2	FAD	binding	domain
DAO	PF01266.19	gi|146304757|ref|YP_001192073.1|	-	1.7e-06	27.2	7.4	0.00038	19.4	0.1	3.5	3	1	1	4	4	4	2	FAD	dependent	oxidoreductase
Thi4	PF01946.12	gi|146304757|ref|YP_001192073.1|	-	0.00023	20.3	1.6	0.0029	16.7	0.2	2.6	1	1	0	2	2	2	1	Thi4	family
NAD_binding_7	PF13241.1	gi|146304757|ref|YP_001192073.1|	-	0.00028	21.0	0.1	0.26	11.5	0.0	2.7	2	1	0	2	2	2	2	Putative	NAD(P)-binding
UDPG_MGDP_dh_N	PF03721.9	gi|146304757|ref|YP_001192073.1|	-	0.00037	19.9	0.0	0.08	12.3	0.0	2.5	2	0	0	2	2	2	1	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
ApbA	PF02558.11	gi|146304757|ref|YP_001192073.1|	-	0.00067	19.1	0.5	0.62	9.4	0.1	2.5	2	0	0	2	2	2	2	Ketopantoate	reductase	PanE/ApbA
Lycopene_cycl	PF05834.7	gi|146304757|ref|YP_001192073.1|	-	0.0028	16.6	1.4	0.2	10.5	0.0	2.6	3	0	0	3	3	3	1	Lycopene	cyclase	protein
3HCDH_N	PF02737.13	gi|146304757|ref|YP_001192073.1|	-	0.0032	17.1	0.1	0.33	10.5	0.0	2.3	2	0	0	2	2	2	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|146304757|ref|YP_001192073.1|	-	0.012	15.4	0.2	7	6.3	0.0	2.7	2	0	0	2	2	2	0	FAD-NAD(P)-binding
AlaDh_PNT_C	PF01262.16	gi|146304757|ref|YP_001192073.1|	-	0.041	13.4	0.1	0.83	9.1	0.0	2.5	2	0	0	2	2	2	0	Alanine	dehydrogenase/PNT,	C-terminal	domain
K_oxygenase	PF13434.1	gi|146304757|ref|YP_001192073.1|	-	0.099	11.5	0.1	0.92	8.3	0.0	2.2	2	1	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
BPL_LplA_LipB	PF03099.14	gi|146304758|ref|YP_001192074.1|	-	8e-17	61.4	0.1	1.3e-16	60.7	0.1	1.2	1	0	0	1	1	1	1	Biotin/lipoate	A/B	protein	ligase	family
DUF2951	PF11166.3	gi|146304758|ref|YP_001192074.1|	-	0.063	13.1	1.2	0.17	11.7	0.4	1.9	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2951)
Sua5_yciO_yrdC	PF01300.13	gi|146304759|ref|YP_001192075.1|	-	2.2e-57	193.2	0.0	6.4e-57	191.6	0.0	1.8	2	0	0	2	2	2	1	Telomere	recombination
SUA5	PF03481.8	gi|146304759|ref|YP_001192075.1|	-	7.2e-30	103.6	0.0	1.1e-29	103.0	0.0	1.2	1	0	0	1	1	1	1	Putative	GTP-binding	controlling	metal-binding
Oxidored_q6	PF01058.17	gi|146304760|ref|YP_001192076.1|	-	4.7e-21	74.7	0.0	7.1e-21	74.1	0.0	1.3	1	0	0	1	1	1	1	NADH	ubiquinone	oxidoreductase,	20	Kd	subunit
DUF4147	PF13660.1	gi|146304761|ref|YP_001192077.1|	-	1.2e-56	191.4	0.0	1.9e-56	190.8	0.0	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4147)
MOFRL	PF05161.8	gi|146304761|ref|YP_001192077.1|	-	9.6e-28	96.4	0.1	2.1e-27	95.3	0.0	1.6	1	0	0	1	1	1	1	MOFRL	family
MFS_1	PF07690.11	gi|146304762|ref|YP_001192078.1|	-	4.2e-09	35.5	32.1	4.2e-09	35.5	22.2	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
MFS_3	PF05977.8	gi|146304762|ref|YP_001192078.1|	-	9.7e-07	27.2	19.9	1.3e-06	26.8	13.6	1.4	1	1	0	1	1	1	1	Transmembrane	secretion	effector
DUF2250	PF10007.4	gi|146304763|ref|YP_001192079.1|	-	0.04	13.8	0.0	0.25	11.2	0.0	2.1	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
GHBP	PF12772.2	gi|146304763|ref|YP_001192079.1|	-	0.041	13.2	0.0	0.041	13.2	0.0	1.1	1	0	0	1	1	1	0	Growth	hormone	receptor	binding
Fe_dep_repr_C	PF02742.10	gi|146304764|ref|YP_001192080.1|	-	7.3e-28	96.0	1.8	9.9e-28	95.6	0.2	1.9	2	0	0	2	2	2	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|146304764|ref|YP_001192080.1|	-	8.1e-11	41.7	0.0	2.1e-10	40.3	0.0	1.7	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
FeoA	PF04023.9	gi|146304764|ref|YP_001192080.1|	-	1.5e-08	34.4	0.4	1.7e-07	31.0	0.0	2.4	2	1	1	3	3	3	1	FeoA	domain
MarR	PF01047.17	gi|146304764|ref|YP_001192080.1|	-	1.8e-06	27.5	0.0	6.3e-06	25.7	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_27	PF13463.1	gi|146304764|ref|YP_001192080.1|	-	2.6e-05	24.4	0.0	6.5e-05	23.1	0.0	1.7	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|146304764|ref|YP_001192080.1|	-	3.5e-05	23.3	0.1	9.7e-05	21.9	0.0	1.8	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.1	gi|146304764|ref|YP_001192080.1|	-	6.1e-05	22.3	0.0	0.00013	21.2	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
GntR	PF00392.16	gi|146304764|ref|YP_001192080.1|	-	0.00087	18.6	0.0	0.0027	17.1	0.0	1.8	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_5	PF01022.15	gi|146304764|ref|YP_001192080.1|	-	0.0011	18.6	0.0	0.002	17.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.1	gi|146304764|ref|YP_001192080.1|	-	0.0016	18.2	0.0	0.0027	17.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
AAA_assoc_C	PF09821.4	gi|146304764|ref|YP_001192080.1|	-	0.0022	18.2	0.0	0.0035	17.6	0.0	1.4	1	0	0	1	1	1	1	C-terminal	AAA-associated	domain
HTH_11	PF08279.7	gi|146304764|ref|YP_001192080.1|	-	0.0042	16.7	0.1	0.011	15.3	0.0	1.7	1	0	0	1	1	1	1	HTH	domain
HTH_41	PF14502.1	gi|146304764|ref|YP_001192080.1|	-	0.0049	16.4	0.0	0.012	15.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_DeoR	PF08220.7	gi|146304764|ref|YP_001192080.1|	-	0.0058	16.1	0.0	0.011	15.2	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|146304764|ref|YP_001192080.1|	-	0.015	15.1	0.1	0.045	13.5	0.0	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
TrmB	PF01978.14	gi|146304764|ref|YP_001192080.1|	-	0.026	14.2	0.0	0.059	13.0	0.0	1.6	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
FeoC	PF09012.5	gi|146304764|ref|YP_001192080.1|	-	0.027	14.1	0.0	0.049	13.3	0.0	1.4	1	0	0	1	1	1	0	FeoC	like	transcriptional	regulator
DUF4423	PF14394.1	gi|146304764|ref|YP_001192080.1|	-	0.033	13.7	0.0	0.053	13.0	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HemN_C	PF06969.11	gi|146304764|ref|YP_001192080.1|	-	0.073	13.1	0.0	0.16	12.0	0.0	1.6	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_36	PF13730.1	gi|146304764|ref|YP_001192080.1|	-	0.089	12.9	0.0	0.16	12.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
YmdB	PF13277.1	gi|146304765|ref|YP_001192081.1|	-	0.00076	18.5	0.0	0.00084	18.4	0.0	1.1	1	0	0	1	1	1	1	YmdB-like	protein
DUF456	PF04306.8	gi|146304766|ref|YP_001192082.1|	-	0.0071	16.3	2.0	0.0092	16.0	1.4	1.2	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF456)
Gly-zipper_YMGG	PF13441.1	gi|146304766|ref|YP_001192082.1|	-	0.019	14.4	1.9	0.036	13.5	1.3	1.5	1	0	0	1	1	1	0	YMGG-like	Gly-zipper
Gly-zipper_OmpA	PF13436.1	gi|146304766|ref|YP_001192082.1|	-	0.23	11.1	0.7	0.28	10.8	0.5	1.3	1	0	0	1	1	1	0	Glycine-zipper	containing	OmpA-like	membrane	domain
KGG	PF10685.4	gi|146304766|ref|YP_001192082.1|	-	0.99	9.4	3.2	2.1	8.3	0.6	2.2	2	0	0	2	2	2	0	Stress-induced	bacterial	acidophilic	repeat	motif
Bacteriocin_IIc	PF10439.4	gi|146304766|ref|YP_001192082.1|	-	5	7.3	8.4	12	6.1	5.8	1.7	1	1	0	1	1	1	0	Bacteriocin	class	II	with	double-glycine	leader	peptide
DUF2892	PF11127.3	gi|146304767|ref|YP_001192083.1|	-	0.46	10.3	0.1	0.46	10.3	0.0	2.4	2	2	0	2	2	2	0	Protein	of	unknown	function	(DUF2892)
Methyltransf_11	PF08241.7	gi|146304768|ref|YP_001192084.1|	-	3.3e-21	75.5	0.0	4.7e-21	75.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146304768|ref|YP_001192084.1|	-	2.6e-11	43.3	0.0	3.4e-11	42.9	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146304768|ref|YP_001192084.1|	-	3.8e-11	42.5	0.0	5.2e-11	42.1	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|146304768|ref|YP_001192084.1|	-	1.5e-09	38.0	0.0	2.5e-09	37.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146304768|ref|YP_001192084.1|	-	1.8e-08	34.7	0.0	2.8e-08	34.1	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146304768|ref|YP_001192084.1|	-	9e-07	28.7	0.0	1.3e-06	28.2	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146304768|ref|YP_001192084.1|	-	0.00027	21.4	0.0	0.00044	20.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_8	PF05148.10	gi|146304768|ref|YP_001192084.1|	-	0.0066	16.1	0.0	0.0099	15.5	0.0	1.3	1	0	0	1	1	1	1	Hypothetical	methyltransferase
Methyltransf_26	PF13659.1	gi|146304768|ref|YP_001192084.1|	-	0.01	15.8	0.0	0.027	14.4	0.0	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
DREV	PF05219.7	gi|146304768|ref|YP_001192084.1|	-	0.08	11.8	0.0	0.12	11.2	0.0	1.2	1	0	0	1	1	1	0	DREV	methyltransferase
CBS	PF00571.23	gi|146304769|ref|YP_001192085.1|	-	1.3e-17	63.3	8.9	2.2e-07	30.5	0.1	5.0	4	2	0	4	4	4	3	CBS	domain
RVT_3	PF13456.1	gi|146304769|ref|YP_001192085.1|	-	0.2	11.4	0.9	29	4.5	0.0	3.0	2	1	0	2	2	2	0	Reverse	transcriptase-like
MobB	PF03205.9	gi|146304770|ref|YP_001192086.1|	-	1.4e-24	86.4	0.1	1.7e-24	86.1	0.0	1.1	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
Peptidase_S24	PF00717.18	gi|146304770|ref|YP_001192086.1|	-	0.017	14.7	0.2	0.04	13.5	0.1	1.7	1	0	0	1	1	1	0	Peptidase	S24-like
AAA_16	PF13191.1	gi|146304770|ref|YP_001192086.1|	-	0.081	12.9	0.1	0.32	10.9	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
MoeA_N	PF03453.12	gi|146304771|ref|YP_001192087.1|	-	4.3e-39	133.4	0.0	6.5e-39	132.8	0.0	1.3	1	0	0	1	1	1	1	MoeA	N-terminal	region	(domain	I	and	II)
MoCF_biosynth	PF00994.19	gi|146304771|ref|YP_001192087.1|	-	1.4e-17	63.4	0.0	3e-17	62.3	0.0	1.6	1	0	0	1	1	1	1	Probable	molybdopterin	binding	domain
NTP_transf_3	PF12804.2	gi|146304772|ref|YP_001192088.1|	-	8.9e-19	68.1	0.0	1.4e-18	67.4	0.0	1.3	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
ATP_bind_4	PF01902.12	gi|146304773|ref|YP_001192089.1|	-	1.3e-60	204.5	0.1	1.4e-60	204.3	0.0	1.0	1	0	0	1	1	1	1	ATP-binding	region
QueC	PF06508.8	gi|146304773|ref|YP_001192089.1|	-	0.00094	18.5	0.0	0.0068	15.7	0.0	2.2	2	1	0	3	3	3	1	Queuosine	biosynthesis	protein	QueC
ThiI	PF02568.9	gi|146304773|ref|YP_001192089.1|	-	0.019	14.4	0.0	0.51	9.7	0.0	2.1	2	0	0	2	2	2	0	Thiamine	biosynthesis	protein	(ThiI)
B5	PF03484.10	gi|146304773|ref|YP_001192089.1|	-	0.054	13.3	0.0	4.1	7.2	0.0	2.4	2	0	0	2	2	2	0	tRNA	synthetase	B5	domain
DUF3939	PF13075.1	gi|146304773|ref|YP_001192089.1|	-	0.055	13.1	0.0	0.086	12.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3939)
Amidohydro_1	PF01979.15	gi|146304774|ref|YP_001192090.1|	-	3.1e-31	109.2	0.0	6.7e-31	108.1	0.0	1.6	1	1	0	1	1	1	1	Amidohydrolase	family
Amidohydro_4	PF13147.1	gi|146304774|ref|YP_001192090.1|	-	1.4e-12	48.2	0.1	2.7e-07	30.9	0.0	2.3	2	1	0	2	2	2	2	Amidohydrolase
Amidohydro_3	PF07969.6	gi|146304774|ref|YP_001192090.1|	-	3.3e-09	36.4	0.1	1.6e-05	24.3	0.0	2.4	2	1	0	2	2	2	2	Amidohydrolase	family
Amidohydro_5	PF13594.1	gi|146304774|ref|YP_001192090.1|	-	1.2e-08	34.6	0.3	3.5e-08	33.1	0.0	2.0	2	0	0	2	2	2	1	Amidohydrolase
A_deaminase	PF00962.17	gi|146304774|ref|YP_001192090.1|	-	5.2e-05	22.3	0.0	0.0001	21.3	0.0	1.4	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
NTF-like	PF14540.1	gi|146304774|ref|YP_001192090.1|	-	0.0057	16.2	0.1	0.021	14.4	0.0	2.0	2	0	0	2	2	2	1	Nucleotidyltransferase-like
TrmB	PF01978.14	gi|146304775|ref|YP_001192091.1|	-	2.2e-14	52.9	0.2	3.2e-14	52.3	0.2	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304775|ref|YP_001192091.1|	-	2.5e-08	33.4	0.0	4e-08	32.8	0.0	1.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|146304775|ref|YP_001192091.1|	-	1.4e-05	24.6	0.1	2.3e-05	23.9	0.1	1.3	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.15	gi|146304775|ref|YP_001192091.1|	-	3.8e-05	23.2	0.2	3.8e-05	23.2	0.1	2.0	3	0	0	3	3	3	1	Bacterial	regulatory	protein,	arsR	family
TFIIE_alpha	PF02002.12	gi|146304775|ref|YP_001192091.1|	-	5.6e-05	22.5	0.1	6.9e-05	22.3	0.1	1.2	1	0	0	1	1	1	1	TFIIE	alpha	subunit
HTH_27	PF13463.1	gi|146304775|ref|YP_001192091.1|	-	0.00023	21.3	0.0	0.00036	20.7	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
CENP-F_N	PF10481.4	gi|146304775|ref|YP_001192091.1|	-	0.0019	17.6	0.0	0.0023	17.3	0.0	1.1	1	0	0	1	1	1	1	Cenp-F	N-terminal	domain
HTH_24	PF13412.1	gi|146304775|ref|YP_001192091.1|	-	0.0019	17.5	0.3	0.0036	16.6	0.2	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.2	gi|146304775|ref|YP_001192091.1|	-	0.0021	17.7	0.0	0.0031	17.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
DUF4423	PF14394.1	gi|146304775|ref|YP_001192091.1|	-	0.012	15.1	0.4	0.028	13.9	0.1	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4423)
z-alpha	PF02295.12	gi|146304775|ref|YP_001192091.1|	-	0.04	13.7	0.0	0.061	13.0	0.0	1.4	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
Fe_dep_repress	PF01325.14	gi|146304775|ref|YP_001192091.1|	-	0.042	13.8	0.1	0.087	12.7	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_9	PF08221.6	gi|146304775|ref|YP_001192091.1|	-	0.043	13.7	0.0	0.067	13.0	0.0	1.3	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Replic_Relax	PF13814.1	gi|146304775|ref|YP_001192091.1|	-	0.089	12.6	0.0	0.11	12.3	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
HTH_DeoR	PF08220.7	gi|146304775|ref|YP_001192091.1|	-	0.13	11.7	0.2	0.32	10.5	0.0	1.7	2	0	0	2	2	2	0	DeoR-like	helix-turn-helix	domain
Antitoxin-MazE	PF04014.13	gi|146304776|ref|YP_001192092.1|	-	3.2e-11	42.6	0.1	3.5e-11	42.5	0.1	1.1	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
eIF-1a	PF01176.14	gi|146304776|ref|YP_001192092.1|	-	8.8e-05	21.8	0.2	0.00013	21.3	0.1	1.3	1	1	0	1	1	1	1	Translation	initiation	factor	1A	/	IF-1
DUF1905	PF08922.6	gi|146304776|ref|YP_001192092.1|	-	0.054	13.0	0.1	0.14	11.7	0.0	1.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF1905)
DUF3876	PF12992.2	gi|146304776|ref|YP_001192092.1|	-	0.059	13.3	0.1	0.094	12.6	0.0	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function,	B.	Theta	Gene	description	(DUF3876)
DUF4387	PF14330.1	gi|146304776|ref|YP_001192092.1|	-	0.1	12.9	0.1	0.12	12.7	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4387)
TatD_DNase	PF01026.16	gi|146304777|ref|YP_001192093.1|	-	1.8e-50	171.4	0.0	2.2e-50	171.2	0.0	1.0	1	0	0	1	1	1	1	TatD	related	DNase
Ribosomal_L29	PF00831.18	gi|146304777|ref|YP_001192093.1|	-	2	8.1	4.7	3.8	7.2	0.0	3.0	3	0	0	3	3	3	0	Ribosomal	L29	protein
DUF3675	PF12428.3	gi|146304778|ref|YP_001192094.1|	-	0.35	11.1	1.8	0.38	11.0	1.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3675)
Cu-oxidase_3	PF07732.10	gi|146304779|ref|YP_001192095.1|	-	0.0056	16.4	0.2	0.73	9.5	0.0	3.3	3	0	0	3	3	3	2	Multicopper	oxidase
COX1	PF00115.15	gi|146304780|ref|YP_001192096.1|	-	8.3e-59	199.3	57.5	8.3e-59	199.3	39.8	2.7	2	1	1	3	3	3	3	Cytochrome	C	and	Quinol	oxidase	polypeptide	I
UPF0147	PF03685.8	gi|146304782|ref|YP_001192098.1|	-	3.5e-37	126.1	3.2	3.8e-37	126.0	2.2	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0147)
UPF0253	PF06786.7	gi|146304782|ref|YP_001192098.1|	-	0.0028	17.7	0.7	0.31	11.2	0.1	2.2	1	1	1	2	2	2	2	Uncharacterised	protein	family	(UPF0253)
HEAT_2	PF13646.1	gi|146304782|ref|YP_001192098.1|	-	0.094	13.0	0.5	0.18	12.0	0.3	1.5	1	1	0	1	1	1	0	HEAT	repeats
Auto_anti-p27	PF06677.7	gi|146304783|ref|YP_001192099.1|	-	4.9e-16	58.2	0.1	7.3e-16	57.6	0.1	1.3	1	0	0	1	1	1	1	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
DNA_ligase_ZBD	PF03119.11	gi|146304783|ref|YP_001192099.1|	-	0.002	17.7	0.5	0.0042	16.7	0.3	1.7	1	1	0	1	1	1	1	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
TF_Zn_Ribbon	PF08271.7	gi|146304783|ref|YP_001192099.1|	-	0.0032	16.7	0.2	0.0082	15.4	0.1	1.8	1	0	0	1	1	1	1	TFIIB	zinc-binding
Rad50_zn_hook	PF04423.9	gi|146304783|ref|YP_001192099.1|	-	0.039	13.4	1.2	0.099	12.1	0.1	2.3	1	1	1	2	2	2	0	Rad50	zinc	hook	motif
RPA_interact_C	PF14768.1	gi|146304783|ref|YP_001192099.1|	-	0.068	13.5	0.0	0.097	13.0	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	interacting	C-terminal
Cpn10	PF00166.16	gi|146304783|ref|YP_001192099.1|	-	0.083	12.8	0.3	0.22	11.4	0.1	1.8	1	1	0	2	2	2	0	Chaperonin	10	Kd	subunit
Cas_Cas4	PF01930.12	gi|146304783|ref|YP_001192099.1|	-	0.094	12.6	0.8	0.11	12.4	0.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF83
Peptidase_S24	PF00717.18	gi|146304783|ref|YP_001192099.1|	-	0.24	11.0	1.3	6.5	6.4	0.0	2.2	1	1	1	2	2	2	0	Peptidase	S24-like
Thymidylate_kin	PF02223.12	gi|146304784|ref|YP_001192100.1|	-	1.9e-37	128.4	0.0	2.2e-37	128.2	0.0	1.0	1	0	0	1	1	1	1	Thymidylate	kinase
AAA_18	PF13238.1	gi|146304784|ref|YP_001192100.1|	-	2.3e-07	31.1	0.0	3.9e-07	30.4	0.0	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|146304784|ref|YP_001192100.1|	-	1.9e-06	27.9	0.0	2.2e-06	27.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146304784|ref|YP_001192100.1|	-	1e-05	25.4	0.0	4.2e-05	23.4	0.0	2.0	1	1	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146304784|ref|YP_001192100.1|	-	1.4e-05	25.9	0.1	4.6e-05	24.2	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
SKI	PF01202.17	gi|146304784|ref|YP_001192100.1|	-	6.8e-05	22.7	0.1	0.23	11.3	0.0	2.2	2	0	0	2	2	2	2	Shikimate	kinase
KTI12	PF08433.5	gi|146304784|ref|YP_001192100.1|	-	0.0012	18.1	0.0	0.0024	17.1	0.0	1.6	2	0	0	2	2	2	1	Chromatin	associated	protein	KTI12
AAA_14	PF13173.1	gi|146304784|ref|YP_001192100.1|	-	0.0051	16.7	0.0	0.0093	15.8	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_22	PF13401.1	gi|146304784|ref|YP_001192100.1|	-	0.042	13.9	0.0	0.076	13.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
CbiA	PF01656.18	gi|146304784|ref|YP_001192100.1|	-	0.048	13.0	0.0	0.2	11.0	0.0	1.8	1	1	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
PPK2	PF03976.9	gi|146304784|ref|YP_001192100.1|	-	0.048	12.9	0.0	0.075	12.2	0.0	1.2	1	0	0	1	1	1	0	Polyphosphate	kinase	2	(PPK2)
dNK	PF01712.14	gi|146304784|ref|YP_001192100.1|	-	0.063	13.1	0.1	0.26	11.2	0.1	1.9	1	1	0	1	1	1	0	Deoxynucleoside	kinase
AAA_19	PF13245.1	gi|146304784|ref|YP_001192100.1|	-	0.094	12.4	0.0	0.2	11.4	0.0	1.6	2	0	0	2	2	2	0	Part	of	AAA	domain
MobB	PF03205.9	gi|146304785|ref|YP_001192101.1|	-	0.071	12.8	0.0	0.15	11.7	0.0	1.5	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
KaiC	PF06745.8	gi|146304787|ref|YP_001192103.1|	-	5.2e-05	22.4	2.8	0.0058	15.7	0.2	2.1	1	1	1	2	2	2	2	KaiC
AAA_25	PF13481.1	gi|146304787|ref|YP_001192103.1|	-	0.00096	18.6	0.5	0.12	11.7	0.0	2.1	1	1	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|146304787|ref|YP_001192103.1|	-	0.0019	18.3	0.1	0.0048	17.0	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
RecA	PF00154.16	gi|146304787|ref|YP_001192103.1|	-	0.004	16.2	0.0	0.0065	15.5	0.0	1.2	1	0	0	1	1	1	1	recA	bacterial	DNA	recombination	protein
ABC_tran	PF00005.22	gi|146304787|ref|YP_001192103.1|	-	0.0071	16.6	0.1	0.011	16.0	0.1	1.4	1	1	0	1	1	1	1	ABC	transporter
AAA	PF00004.24	gi|146304787|ref|YP_001192103.1|	-	0.013	15.7	0.1	0.028	14.6	0.1	1.6	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_5	PF07728.9	gi|146304787|ref|YP_001192103.1|	-	0.048	13.3	0.0	0.068	12.8	0.0	1.4	1	1	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
ATP-synt_ab	PF00006.20	gi|146304787|ref|YP_001192103.1|	-	0.05	13.1	0.5	0.12	11.8	0.3	1.7	1	1	0	1	1	1	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
Arch_ATPase	PF01637.13	gi|146304787|ref|YP_001192103.1|	-	0.062	12.9	0.1	0.084	12.5	0.1	1.3	1	1	0	1	1	1	0	Archaeal	ATPase
IstB_IS21	PF01695.12	gi|146304787|ref|YP_001192103.1|	-	0.063	12.6	0.1	0.13	11.6	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
DUF2075	PF09848.4	gi|146304787|ref|YP_001192103.1|	-	0.084	11.8	0.0	0.084	11.8	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_19	PF13245.1	gi|146304787|ref|YP_001192103.1|	-	0.095	12.4	0.0	0.26	11.0	0.0	1.7	2	0	0	2	2	2	0	Part	of	AAA	domain
PEPCK_ATP	PF01293.15	gi|146304787|ref|YP_001192103.1|	-	0.1	11.0	0.2	0.15	10.5	0.1	1.2	1	0	0	1	1	1	0	Phosphoenolpyruvate	carboxykinase
DUF46	PF01864.12	gi|146304788|ref|YP_001192104.1|	-	8.7e-44	149.4	8.9	2.7e-43	147.8	6.2	1.6	1	1	0	1	1	1	1	Putative	integral	membrane	protein	DUF46
CTP_transf_1	PF01148.15	gi|146304788|ref|YP_001192104.1|	-	9.3e-06	25.4	5.4	9.3e-06	25.4	3.8	1.9	1	1	0	1	1	1	1	Cytidylyltransferase	family
DUF347	PF03988.7	gi|146304788|ref|YP_001192104.1|	-	1.1	9.2	0.1	1.1	9.2	0.0	3.1	2	1	1	3	3	3	0	Repeat	of	Unknown	Function	(DUF347)
ABC2_membrane_5	PF13346.1	gi|146304789|ref|YP_001192105.1|	-	0.0054	16.0	11.3	0.0057	15.9	7.8	1.0	1	0	0	1	1	1	1	ABC-2	family	transporter	protein
SURF4	PF02077.10	gi|146304789|ref|YP_001192105.1|	-	0.011	15.0	0.6	0.011	15.0	0.4	1.8	2	0	0	2	2	2	0	SURF4	family
Acyl_transf_3	PF01757.17	gi|146304789|ref|YP_001192105.1|	-	0.023	13.5	4.7	0.026	13.3	3.3	1.1	1	0	0	1	1	1	0	Acyltransferase	family
DUF4064	PF13273.1	gi|146304789|ref|YP_001192105.1|	-	1.3	9.2	17.0	0.25	11.4	2.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF4064)
MCM	PF00493.18	gi|146304791|ref|YP_001192107.1|	-	2.3e-132	440.8	0.2	3.3e-132	440.2	0.1	1.2	1	0	0	1	1	1	1	MCM2/3/5	family
MCM_N	PF14551.1	gi|146304791|ref|YP_001192107.1|	-	7.9e-20	71.5	2.5	2.6e-19	69.8	0.7	2.4	2	0	0	2	2	2	1	MCM	N-terminal	domain
AAA_5	PF07728.9	gi|146304791|ref|YP_001192107.1|	-	1.9e-08	34.1	0.0	4.8e-08	32.8	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Mg_chelatase	PF01078.16	gi|146304791|ref|YP_001192107.1|	-	2e-06	27.0	0.0	0.00015	21.0	0.0	2.6	1	1	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.21	gi|146304791|ref|YP_001192107.1|	-	1.1e-05	24.9	0.2	4.3e-05	23.0	0.1	1.9	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_3	PF07726.6	gi|146304791|ref|YP_001192107.1|	-	3.5e-05	23.4	0.0	6.8e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sld5	PF05916.6	gi|146304792|ref|YP_001192108.1|	-	3.2e-08	33.8	0.2	4.6e-08	33.3	0.1	1.2	1	0	0	1	1	1	1	GINS	complex	protein
THUMP	PF02926.12	gi|146304793|ref|YP_001192109.1|	-	0.0041	16.9	0.0	0.0055	16.6	0.0	1.2	1	0	0	1	1	1	1	THUMP	domain
Cdc6_C	PF09079.6	gi|146304794|ref|YP_001192110.1|	-	3.4e-23	81.1	0.1	7e-23	80.1	0.1	1.6	1	0	0	1	1	1	1	CDC6,	C	terminal
AAA_22	PF13401.1	gi|146304794|ref|YP_001192110.1|	-	1.3e-13	51.2	1.0	4e-12	46.4	0.0	2.5	2	1	0	2	2	2	1	AAA	domain
AAA_16	PF13191.1	gi|146304794|ref|YP_001192110.1|	-	7.6e-08	32.5	0.8	3.4e-06	27.1	0.2	3.0	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA	PF00004.24	gi|146304794|ref|YP_001192110.1|	-	0.00011	22.4	0.0	0.00024	21.3	0.0	1.6	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
T2SE	PF00437.15	gi|146304794|ref|YP_001192110.1|	-	0.002	17.1	0.3	0.0043	15.9	0.2	1.5	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
DUF2036	PF09724.4	gi|146304794|ref|YP_001192110.1|	-	0.0035	16.5	0.0	0.0066	15.6	0.0	1.3	1	0	0	1	1	1	1	Uncharacterized	conserved	protein	(DUF2036)
Sigma54_activat	PF00158.21	gi|146304794|ref|YP_001192110.1|	-	0.0081	15.6	0.0	0.063	12.7	0.0	2.1	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_19	PF13245.1	gi|146304794|ref|YP_001192110.1|	-	0.015	15.0	0.2	0.036	13.8	0.1	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
NACHT	PF05729.7	gi|146304794|ref|YP_001192110.1|	-	0.019	14.6	0.0	0.038	13.6	0.0	1.6	1	1	0	1	1	1	0	NACHT	domain
AAA_17	PF13207.1	gi|146304794|ref|YP_001192110.1|	-	0.025	15.3	1.0	0.092	13.5	0.5	2.2	1	1	0	1	1	1	0	AAA	domain
AAA_24	PF13479.1	gi|146304794|ref|YP_001192110.1|	-	0.027	14.0	0.2	0.049	13.2	0.2	1.4	1	0	0	1	1	1	0	AAA	domain
RNA_helicase	PF00910.17	gi|146304794|ref|YP_001192110.1|	-	0.058	13.5	0.0	0.13	12.4	0.0	1.6	1	0	0	1	1	1	0	RNA	helicase
FtsK_SpoIIIE	PF01580.13	gi|146304794|ref|YP_001192110.1|	-	0.068	12.6	0.0	11	5.4	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ResIII	PF04851.10	gi|146304794|ref|YP_001192110.1|	-	0.088	12.6	0.0	0.15	11.8	0.0	1.3	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
DAP3	PF10236.4	gi|146304794|ref|YP_001192110.1|	-	0.09	11.6	0.3	1	8.1	0.1	2.3	2	0	0	2	2	2	0	Mitochondrial	ribosomal	death-associated	protein	3
AAA_30	PF13604.1	gi|146304794|ref|YP_001192110.1|	-	0.11	12.0	0.0	0.19	11.2	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_18	PF13238.1	gi|146304794|ref|YP_001192110.1|	-	0.16	12.2	2.3	0.6	10.4	1.5	2.3	1	1	0	1	1	1	0	AAA	domain
TrmB	PF01978.14	gi|146304795|ref|YP_001192111.1|	-	0.0058	16.3	0.2	0.0077	15.9	0.1	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Ftsk_gamma	PF09397.5	gi|146304795|ref|YP_001192111.1|	-	0.008	15.8	0.2	0.008	15.8	0.1	1.7	2	1	0	2	2	2	1	Ftsk	gamma	domain
HemN_C	PF06969.11	gi|146304795|ref|YP_001192111.1|	-	0.022	14.8	0.3	0.034	14.1	0.2	1.4	1	0	0	1	1	1	0	HemN	C-terminal	domain
MarR_2	PF12802.2	gi|146304795|ref|YP_001192111.1|	-	0.093	12.4	0.7	0.14	11.8	0.2	1.5	2	0	0	2	2	2	0	MarR	family
HTH_24	PF13412.1	gi|146304795|ref|YP_001192111.1|	-	0.37	10.2	4.9	0.094	12.1	0.7	2.1	2	1	0	2	2	2	0	Winged	helix-turn-helix	DNA-binding
MoaC	PF01967.16	gi|146304796|ref|YP_001192112.1|	-	1.1e-50	170.8	1.9	1.2e-50	170.7	1.3	1.0	1	0	0	1	1	1	1	MoaC	family
AAA	PF00004.24	gi|146304797|ref|YP_001192113.1|	-	5.5e-15	55.7	0.0	1.9e-14	54.0	0.0	1.9	2	0	0	2	2	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|146304797|ref|YP_001192113.1|	-	2.1e-10	40.0	0.0	8.4e-10	38.0	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DUF815	PF05673.8	gi|146304797|ref|YP_001192113.1|	-	8.4e-07	28.1	0.0	1.5e-06	27.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Rad17	PF03215.10	gi|146304797|ref|YP_001192113.1|	-	1.1e-06	27.5	0.1	0.03	13.0	0.0	2.4	2	0	0	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
TIP49	PF06068.8	gi|146304797|ref|YP_001192113.1|	-	3.3e-06	26.0	0.4	0.019	13.7	0.0	2.2	2	0	0	2	2	2	2	TIP49	C-terminus
AAA_22	PF13401.1	gi|146304797|ref|YP_001192113.1|	-	9e-06	25.8	0.2	0.00029	21.0	0.0	3.3	2	1	1	3	3	3	1	AAA	domain
AAA_17	PF13207.1	gi|146304797|ref|YP_001192113.1|	-	3e-05	24.8	0.3	0.00015	22.5	0.0	2.3	2	1	0	2	2	2	1	AAA	domain
AAA_5	PF07728.9	gi|146304797|ref|YP_001192113.1|	-	3.3e-05	23.6	0.0	9.6e-05	22.1	0.0	1.8	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
DNA_pol3_delta	PF06144.8	gi|146304797|ref|YP_001192113.1|	-	5.9e-05	22.6	0.1	0.018	14.5	0.0	2.3	2	0	0	2	2	2	1	DNA	polymerase	III,	delta	subunit
RNA_helicase	PF00910.17	gi|146304797|ref|YP_001192113.1|	-	8.8e-05	22.6	0.0	0.00048	20.2	0.0	2.3	2	1	0	2	2	1	1	RNA	helicase
AAA_16	PF13191.1	gi|146304797|ref|YP_001192113.1|	-	9.1e-05	22.5	0.0	0.00041	20.4	0.0	2.1	2	0	0	2	2	2	1	AAA	ATPase	domain
AAA_14	PF13173.1	gi|146304797|ref|YP_001192113.1|	-	0.00021	21.2	0.1	0.00054	19.8	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|146304797|ref|YP_001192113.1|	-	0.00044	19.7	0.0	0.00081	18.8	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
AAA_24	PF13479.1	gi|146304797|ref|YP_001192113.1|	-	0.00059	19.4	0.0	0.0012	18.4	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|146304797|ref|YP_001192113.1|	-	0.0017	17.8	0.0	0.0032	16.8	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|146304797|ref|YP_001192113.1|	-	0.0018	17.9	0.0	0.0037	16.9	0.0	1.5	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_2	PF07724.9	gi|146304797|ref|YP_001192113.1|	-	0.0022	17.9	0.0	0.0059	16.5	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
AAA_33	PF13671.1	gi|146304797|ref|YP_001192113.1|	-	0.0042	16.9	0.0	0.013	15.3	0.0	1.9	2	0	0	2	2	2	1	AAA	domain
PPV_E1_C	PF00519.12	gi|146304797|ref|YP_001192113.1|	-	0.0058	15.2	0.0	0.013	14.0	0.0	1.5	1	0	0	1	1	1	1	Papillomavirus	helicase
AAA_28	PF13521.1	gi|146304797|ref|YP_001192113.1|	-	0.0066	16.4	0.0	0.016	15.1	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
PhoH	PF02562.11	gi|146304797|ref|YP_001192113.1|	-	0.011	14.9	0.0	0.024	13.8	0.0	1.7	1	0	0	1	1	1	0	PhoH-like	protein
AAA_18	PF13238.1	gi|146304797|ref|YP_001192113.1|	-	0.017	15.4	0.0	0.064	13.5	0.0	2.0	1	0	0	1	1	1	0	AAA	domain
Mg_chelatase	PF01078.16	gi|146304797|ref|YP_001192113.1|	-	0.023	13.8	0.0	0.043	12.9	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
Death	PF00531.17	gi|146304797|ref|YP_001192113.1|	-	0.024	14.3	1.4	0.14	11.9	0.0	3.0	4	0	0	4	4	4	0	Death	domain
Parvo_NS1	PF01057.12	gi|146304797|ref|YP_001192113.1|	-	0.025	13.4	0.1	0.097	11.5	0.0	1.8	2	0	0	2	2	2	0	Parvovirus	non-structural	protein	NS1
MMR_HSR1	PF01926.18	gi|146304797|ref|YP_001192113.1|	-	0.038	13.9	0.0	0.087	12.7	0.0	1.6	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
AAA_11	PF13086.1	gi|146304797|ref|YP_001192113.1|	-	0.041	13.4	0.4	0.2	11.2	0.0	1.9	2	1	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.7	gi|146304797|ref|YP_001192113.1|	-	0.047	12.7	0.0	0.094	11.7	0.0	1.6	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.7	gi|146304797|ref|YP_001192113.1|	-	0.064	12.9	0.0	0.94	9.1	0.0	2.7	1	1	2	3	3	3	0	NACHT	domain
DUF2075	PF09848.4	gi|146304797|ref|YP_001192113.1|	-	0.074	12.0	0.3	0.23	10.3	0.0	1.9	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
Sigma54_activat	PF00158.21	gi|146304797|ref|YP_001192113.1|	-	0.08	12.4	0.0	0.37	10.2	0.0	2.0	1	1	0	1	1	1	0	Sigma-54	interaction	domain
Rep_fac_C	PF08542.6	gi|146304798|ref|YP_001192114.1|	-	9.6e-22	76.7	0.1	2.6e-21	75.4	0.0	1.8	1	0	0	1	1	1	1	Replication	factor	C	C-terminal	domain
AAA	PF00004.24	gi|146304798|ref|YP_001192114.1|	-	2.2e-13	50.5	0.0	4.2e-13	49.6	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
DNA_pol3_delta2	PF13177.1	gi|146304798|ref|YP_001192114.1|	-	5.8e-13	48.8	0.0	7.9e-11	41.8	0.0	2.2	1	1	0	1	1	1	1	DNA	polymerase	III,	delta	subunit
Rad17	PF03215.10	gi|146304798|ref|YP_001192114.1|	-	1.9e-08	33.4	0.0	0.0005	18.8	0.0	2.1	1	1	1	2	2	2	2	Rad17	cell	cycle	checkpoint	protein
RuvB_N	PF05496.7	gi|146304798|ref|YP_001192114.1|	-	2.6e-07	29.9	0.0	6.3e-07	28.6	0.0	1.6	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
DNA_pol3_delta	PF06144.8	gi|146304798|ref|YP_001192114.1|	-	2.2e-06	27.3	0.0	5.6e-06	25.9	0.0	1.6	2	0	0	2	2	1	1	DNA	polymerase	III,	delta	subunit
AAA_14	PF13173.1	gi|146304798|ref|YP_001192114.1|	-	6.7e-06	26.0	0.0	2.5e-05	24.2	0.0	1.9	1	1	1	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|146304798|ref|YP_001192114.1|	-	1.3e-05	25.3	0.0	0.0089	16.1	0.0	2.5	1	1	1	2	2	2	1	AAA	domain
AAA_3	PF07726.6	gi|146304798|ref|YP_001192114.1|	-	2.5e-05	23.8	0.0	4.8e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TIP49	PF06068.8	gi|146304798|ref|YP_001192114.1|	-	7.5e-05	21.6	0.0	0.0096	14.6	0.0	2.2	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_16	PF13191.1	gi|146304798|ref|YP_001192114.1|	-	0.0001	22.3	0.0	0.00054	19.9	0.0	2.1	1	1	0	1	1	1	1	AAA	ATPase	domain
FtsK_SpoIIIE	PF01580.13	gi|146304798|ref|YP_001192114.1|	-	0.00015	21.2	0.0	0.0018	17.7	0.0	2.2	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_19	PF13245.1	gi|146304798|ref|YP_001192114.1|	-	0.0003	20.4	0.0	0.00067	19.3	0.0	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
AAA_11	PF13086.1	gi|146304798|ref|YP_001192114.1|	-	0.00036	20.1	0.0	0.00064	19.3	0.0	1.3	1	1	0	1	1	1	1	AAA	domain
Sigma54_activ_2	PF14532.1	gi|146304798|ref|YP_001192114.1|	-	0.0014	18.6	0.0	0.013	15.4	0.0	2.4	2	1	0	2	2	2	1	Sigma-54	interaction	domain
IstB_IS21	PF01695.12	gi|146304798|ref|YP_001192114.1|	-	0.0018	17.7	0.0	0.003	17.0	0.0	1.4	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
T2SE	PF00437.15	gi|146304798|ref|YP_001192114.1|	-	0.0024	16.7	0.0	0.0049	15.8	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
Mg_chelatase	PF01078.16	gi|146304798|ref|YP_001192114.1|	-	0.0026	16.9	0.1	0.055	12.6	0.0	2.4	1	1	1	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
AAA_18	PF13238.1	gi|146304798|ref|YP_001192114.1|	-	0.003	17.8	0.0	0.0089	16.3	0.0	1.8	2	0	0	2	2	1	1	AAA	domain
AAA_5	PF07728.9	gi|146304798|ref|YP_001192114.1|	-	0.0038	16.9	0.1	0.016	14.9	0.0	2.1	2	1	0	2	2	1	1	AAA	domain	(dynein-related	subfamily)
AAA_25	PF13481.1	gi|146304798|ref|YP_001192114.1|	-	0.004	16.5	0.1	0.011	15.1	0.1	1.8	1	1	0	1	1	1	1	AAA	domain
SNF2_N	PF00176.18	gi|146304798|ref|YP_001192114.1|	-	0.0055	15.5	0.0	0.27	10.0	0.0	2.1	1	1	0	2	2	2	1	SNF2	family	N-terminal	domain
AAA_10	PF12846.2	gi|146304798|ref|YP_001192114.1|	-	0.006	16.0	0.0	0.063	12.7	0.0	2.2	1	1	1	2	2	2	1	AAA-like	domain
DUF815	PF05673.8	gi|146304798|ref|YP_001192114.1|	-	0.0062	15.4	0.0	0.012	14.5	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
KTI12	PF08433.5	gi|146304798|ref|YP_001192114.1|	-	0.012	14.8	0.0	0.019	14.2	0.0	1.3	1	0	0	1	1	1	0	Chromatin	associated	protein	KTI12
SseB_C	PF14581.1	gi|146304798|ref|YP_001192114.1|	-	0.015	15.1	0.1	0.078	12.8	0.0	2.1	2	0	0	2	2	2	0	SseB	protein	C-terminal	domain
ResIII	PF04851.10	gi|146304798|ref|YP_001192114.1|	-	0.017	14.9	0.0	0.041	13.7	0.0	1.6	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_30	PF13604.1	gi|146304798|ref|YP_001192114.1|	-	0.017	14.7	0.0	0.057	12.9	0.0	2.1	1	1	0	1	1	1	0	AAA	domain
Arch_ATPase	PF01637.13	gi|146304798|ref|YP_001192114.1|	-	0.02	14.6	0.0	0.04	13.6	0.0	1.5	1	1	1	2	2	2	0	Archaeal	ATPase
PhoH	PF02562.11	gi|146304798|ref|YP_001192114.1|	-	0.023	13.9	0.0	0.87	8.7	0.0	2.3	2	0	0	2	2	2	0	PhoH-like	protein
AAA_33	PF13671.1	gi|146304798|ref|YP_001192114.1|	-	0.024	14.5	0.0	0.076	12.8	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
DUF2075	PF09848.4	gi|146304798|ref|YP_001192114.1|	-	0.031	13.2	0.0	0.12	11.3	0.0	1.8	1	1	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_28	PF13521.1	gi|146304798|ref|YP_001192114.1|	-	0.038	13.9	0.0	0.081	12.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
DEAD	PF00270.24	gi|146304798|ref|YP_001192114.1|	-	0.046	13.2	0.0	10	5.5	0.0	2.4	1	1	1	2	2	2	0	DEAD/DEAH	box	helicase
Sigma54_activat	PF00158.21	gi|146304798|ref|YP_001192114.1|	-	0.05	13.0	0.0	2	7.8	0.0	2.3	2	0	0	2	2	2	0	Sigma-54	interaction	domain
AAA_17	PF13207.1	gi|146304798|ref|YP_001192114.1|	-	0.09	13.5	1.1	0.18	12.6	0.1	2.1	2	1	0	2	2	1	0	AAA	domain
DNA_pol3_gamma3	PF12169.3	gi|146304798|ref|YP_001192114.1|	-	0.1	12.3	0.8	7	6.4	0.0	3.2	3	1	1	4	4	4	0	DNA	polymerase	III	subunits	gamma	and	tau	domain	III
Viral_helicase1	PF01443.13	gi|146304798|ref|YP_001192114.1|	-	0.13	11.7	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
PBP	PF01161.15	gi|146304799|ref|YP_001192115.1|	-	6.9e-41	139.4	0.0	7.8e-41	139.3	0.0	1.0	1	0	0	1	1	1	1	Phosphatidylethanolamine-binding	protein
Proteasome	PF00227.21	gi|146304800|ref|YP_001192116.1|	-	3.8e-48	163.3	0.5	4.3e-48	163.1	0.3	1.0	1	0	0	1	1	1	1	Proteasome	subunit
Lin0512_fam	PF09585.5	gi|146304800|ref|YP_001192116.1|	-	0.044	13.3	0.0	0.1	12.1	0.0	1.6	2	0	0	2	2	2	0	Conserved	hypothetical	protein	(Lin0512_fam)
HTH_20	PF12840.2	gi|146304801|ref|YP_001192117.1|	-	2.4e-08	33.6	0.0	3.3e-08	33.2	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|146304801|ref|YP_001192117.1|	-	1.1e-05	24.7	0.1	1.8e-05	23.9	0.1	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.15	gi|146304801|ref|YP_001192117.1|	-	1.9e-05	24.1	0.0	3.6e-05	23.3	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
LexA_DNA_bind	PF01726.11	gi|146304801|ref|YP_001192117.1|	-	4.7e-05	22.8	0.0	7.7e-05	22.1	0.0	1.4	1	0	0	1	1	1	1	LexA	DNA	binding	domain
HTH_12	PF08461.5	gi|146304801|ref|YP_001192117.1|	-	0.0011	18.6	0.1	0.002	17.7	0.1	1.5	1	0	0	1	1	1	1	Ribonuclease	R	winged-helix	domain
HTH_27	PF13463.1	gi|146304801|ref|YP_001192117.1|	-	0.0017	18.6	0.0	0.0032	17.7	0.0	1.4	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
TrmB	PF01978.14	gi|146304801|ref|YP_001192117.1|	-	0.0024	17.5	0.4	0.0036	16.9	0.3	1.2	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.17	gi|146304801|ref|YP_001192117.1|	-	0.0081	15.8	0.0	0.016	14.8	0.0	1.5	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.2	gi|146304801|ref|YP_001192117.1|	-	0.0082	15.7	0.0	0.012	15.2	0.0	1.3	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.1	gi|146304801|ref|YP_001192117.1|	-	0.047	13.5	0.0	0.073	12.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix
HemN_C	PF06969.11	gi|146304801|ref|YP_001192117.1|	-	0.1	12.6	0.0	0.15	12.1	0.0	1.3	1	0	0	1	1	1	0	HemN	C-terminal	domain
HTH_11	PF08279.7	gi|146304801|ref|YP_001192117.1|	-	0.11	12.1	0.0	0.17	11.5	0.0	1.3	1	0	0	1	1	1	0	HTH	domain
Fe_dep_repress	PF01325.14	gi|146304801|ref|YP_001192117.1|	-	0.12	12.3	0.2	0.26	11.2	0.1	1.6	1	1	1	2	2	2	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF3522	PF12036.3	gi|146304802|ref|YP_001192118.1|	-	0.017	14.9	0.9	0.022	14.5	0.6	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3522)
MgtE	PF01769.11	gi|146304802|ref|YP_001192118.1|	-	0.13	12.5	3.8	0.16	12.2	2.6	1.1	1	0	0	1	1	1	0	Divalent	cation	transporter
B12-binding	PF02310.14	gi|146304803|ref|YP_001192119.1|	-	1.1e-23	83.3	0.3	1.4e-23	83.0	0.2	1.1	1	0	0	1	1	1	1	B12	binding	domain
Peripla_BP_6	PF13458.1	gi|146304803|ref|YP_001192119.1|	-	0.0032	16.8	0.0	0.0038	16.6	0.0	1.0	1	0	0	1	1	1	1	Periplasmic	binding	protein
QRPTase_C	PF01729.14	gi|146304803|ref|YP_001192119.1|	-	0.017	14.6	0.1	0.032	13.7	0.1	1.5	1	1	0	1	1	1	0	Quinolinate	phosphoribosyl	transferase,	C-terminal	domain
TPP_enzyme_N	PF02776.13	gi|146304803|ref|YP_001192119.1|	-	0.09	12.2	0.0	6.4	6.2	0.0	2.8	3	0	0	3	3	3	0	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
Nitro_FeMo-Co	PF02579.12	gi|146304803|ref|YP_001192119.1|	-	0.097	12.7	0.2	15	5.7	0.0	2.5	1	1	2	3	3	3	0	Dinitrogenase	iron-molybdenum	cofactor
Oxidored_nitro	PF00148.14	gi|146304803|ref|YP_001192119.1|	-	0.12	10.9	0.1	0.36	9.4	0.1	1.7	1	1	0	1	1	1	0	Nitrogenase	component	1	type	Oxidoreductase
Radical_SAM	PF04055.16	gi|146304803|ref|YP_001192119.1|	-	0.16	12.1	0.1	0.76	9.9	0.0	1.9	1	1	1	2	2	2	0	Radical	SAM	superfamily
ArgK	PF03308.11	gi|146304804|ref|YP_001192120.1|	-	1.1e-87	293.1	1.5	1.4e-87	292.8	1.0	1.0	1	0	0	1	1	1	1	ArgK	protein
cobW	PF02492.14	gi|146304804|ref|YP_001192120.1|	-	6e-09	35.5	0.7	2.8e-08	33.3	0.5	2.0	1	1	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
CbiA	PF01656.18	gi|146304804|ref|YP_001192120.1|	-	5.5e-05	22.6	0.1	0.00012	21.5	0.0	1.6	1	1	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
ATP_bind_1	PF03029.12	gi|146304804|ref|YP_001192120.1|	-	0.00011	21.8	0.0	0.0011	18.5	0.0	2.1	2	0	0	2	2	2	1	Conserved	hypothetical	ATP	binding	protein
GTP_EFTU	PF00009.22	gi|146304804|ref|YP_001192120.1|	-	0.00019	20.9	1.2	0.014	14.8	0.0	2.3	2	0	0	2	2	2	1	Elongation	factor	Tu	GTP	binding	domain
AAA_10	PF12846.2	gi|146304804|ref|YP_001192120.1|	-	0.00045	19.7	0.6	0.0018	17.7	0.4	2.1	1	1	0	1	1	1	1	AAA-like	domain
NTPase_1	PF03266.10	gi|146304804|ref|YP_001192120.1|	-	0.00081	19.1	0.1	0.0022	17.7	0.1	1.7	1	0	0	1	1	1	1	NTPase
DUF87	PF01935.12	gi|146304804|ref|YP_001192120.1|	-	0.00098	19.0	2.3	0.05	13.4	0.2	2.2	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
MipZ	PF09140.6	gi|146304804|ref|YP_001192120.1|	-	0.0011	18.0	0.4	0.002	17.2	0.0	1.5	2	0	0	2	2	2	1	ATPase	MipZ
ABC_tran	PF00005.22	gi|146304804|ref|YP_001192120.1|	-	0.0013	19.0	0.5	0.0025	18.0	0.1	1.7	2	0	0	2	2	2	1	ABC	transporter
AAA_17	PF13207.1	gi|146304804|ref|YP_001192120.1|	-	0.0013	19.5	1.4	0.0047	17.7	0.9	2.2	1	1	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.18	gi|146304804|ref|YP_001192120.1|	-	0.0023	17.8	0.3	0.0062	16.4	0.0	1.9	2	0	0	2	2	2	1	50S	ribosome-binding	GTPase
FtsK_SpoIIIE	PF01580.13	gi|146304804|ref|YP_001192120.1|	-	0.0024	17.3	1.5	0.0024	17.3	0.1	1.6	2	0	0	2	2	1	1	FtsK/SpoIIIE	family
MobB	PF03205.9	gi|146304804|ref|YP_001192120.1|	-	0.0029	17.3	0.0	0.0075	15.9	0.0	1.7	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_30	PF13604.1	gi|146304804|ref|YP_001192120.1|	-	0.0053	16.3	0.1	0.0098	15.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|146304804|ref|YP_001192120.1|	-	0.0082	16.1	0.1	0.018	15.0	0.0	1.6	1	0	0	1	1	1	1	AAA	ATPase	domain
Viral_helicase1	PF01443.13	gi|146304804|ref|YP_001192120.1|	-	0.011	15.3	0.0	0.02	14.4	0.0	1.5	1	0	0	1	1	1	0	Viral	(Superfamily	1)	RNA	helicase
AAA_14	PF13173.1	gi|146304804|ref|YP_001192120.1|	-	0.017	15.0	0.0	0.046	13.6	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|146304804|ref|YP_001192120.1|	-	0.019	14.1	0.1	0.074	12.2	0.0	2.0	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
SRP54	PF00448.17	gi|146304804|ref|YP_001192120.1|	-	0.02	14.3	0.1	0.23	10.8	0.1	2.2	1	1	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
Zeta_toxin	PF06414.7	gi|146304804|ref|YP_001192120.1|	-	0.026	13.6	0.7	0.063	12.3	0.1	1.8	2	0	0	2	2	2	0	Zeta	toxin
AAA_22	PF13401.1	gi|146304804|ref|YP_001192120.1|	-	0.027	14.6	0.1	0.18	11.9	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
AAA_19	PF13245.1	gi|146304804|ref|YP_001192120.1|	-	0.031	14.0	0.9	0.085	12.6	0.1	2.1	2	0	0	2	2	2	0	Part	of	AAA	domain
AAA_18	PF13238.1	gi|146304804|ref|YP_001192120.1|	-	0.033	14.5	2.5	0.069	13.4	0.1	2.4	2	1	0	2	2	2	0	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|146304804|ref|YP_001192120.1|	-	0.036	12.6	0.1	0.056	12.0	0.0	1.3	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
KAP_NTPase	PF07693.9	gi|146304804|ref|YP_001192120.1|	-	0.045	12.7	0.0	0.13	11.2	0.0	1.7	1	1	0	1	1	1	0	KAP	family	P-loop	domain
NB-ARC	PF00931.17	gi|146304804|ref|YP_001192120.1|	-	0.047	12.5	0.2	0.1	11.4	0.0	1.6	2	0	0	2	2	2	0	NB-ARC	domain
AAA_29	PF13555.1	gi|146304804|ref|YP_001192120.1|	-	0.05	13.1	0.2	0.11	12.0	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|146304804|ref|YP_001192120.1|	-	0.1	11.9	0.1	0.23	10.8	0.1	1.5	1	0	0	1	1	1	0	AAA	domain
AAA_28	PF13521.1	gi|146304804|ref|YP_001192120.1|	-	0.13	12.2	0.2	0.71	9.8	0.1	2.1	2	0	0	2	2	2	0	AAA	domain
DUF2250	PF10007.4	gi|146304805|ref|YP_001192121.1|	-	2.6e-68	225.9	15.8	3.4e-37	126.2	3.1	2.0	2	0	0	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4423	PF14394.1	gi|146304805|ref|YP_001192121.1|	-	9.8e-06	25.2	1.7	0.0025	17.3	0.1	2.2	2	0	0	2	2	2	2	Domain	of	unknown	function	(DUF4423)
DUF4393	PF14337.1	gi|146304805|ref|YP_001192121.1|	-	1.5e-05	24.5	2.3	0.0065	15.9	0.1	2.3	1	1	1	2	2	2	2	Domain	of	unknown	function	(DUF4393)
Phage_rep_org_N	PF09681.5	gi|146304805|ref|YP_001192121.1|	-	0.00017	21.1	0.8	0.39	10.3	0.1	2.4	2	0	0	2	2	2	2	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
TrmB	PF01978.14	gi|146304805|ref|YP_001192121.1|	-	0.0057	16.3	2.7	0.22	11.2	0.1	3.0	3	1	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
Ins_allergen_rp	PF06757.8	gi|146304805|ref|YP_001192121.1|	-	0.018	14.5	0.6	2.5	7.5	0.0	2.3	2	0	0	2	2	2	0	Insect	allergen	related	repeat,	nitrile-specifier	detoxification
MarR_2	PF12802.2	gi|146304805|ref|YP_001192121.1|	-	0.033	13.8	0.8	1.8	8.3	0.0	3.0	3	1	1	4	4	4	0	MarR	family
DUF2806	PF10987.3	gi|146304805|ref|YP_001192121.1|	-	0.034	13.6	2.6	0.15	11.5	0.2	2.5	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2806)
IF3_N	PF05198.11	gi|146304805|ref|YP_001192121.1|	-	0.043	13.7	0.1	0.24	11.3	0.1	2.2	1	1	0	1	1	1	0	Translation	initiation	factor	IF-3,	N-terminal	domain
DUF1293	PF06950.6	gi|146304805|ref|YP_001192121.1|	-	0.1	12.4	0.1	0.77	9.6	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1293)
PadR	PF03551.9	gi|146304805|ref|YP_001192121.1|	-	0.46	10.2	7.5	13	5.6	0.3	4.2	2	2	1	3	3	3	0	Transcriptional	regulator	PadR-like	family
HTH_27	PF13463.1	gi|146304805|ref|YP_001192121.1|	-	0.61	10.4	6.6	11	6.4	0.1	3.6	4	1	0	4	4	4	0	Winged	helix	DNA-binding	domain
Bac_DNA_binding	PF00216.16	gi|146304805|ref|YP_001192121.1|	-	0.79	9.7	3.7	0.49	10.4	0.3	2.2	2	1	1	3	3	3	0	Bacterial	DNA-binding	protein
HTH_45	PF14947.1	gi|146304805|ref|YP_001192121.1|	-	2.5	7.9	12.6	3.4	7.5	0.9	4.6	1	1	3	4	4	4	0	Winged	helix-turn-helix
Abhydrolase_6	PF12697.2	gi|146304806|ref|YP_001192122.1|	-	3.7e-26	92.4	0.0	5.4e-18	65.7	0.1	2.0	1	1	1	2	2	2	2	Alpha/beta	hydrolase	family
Abhydrolase_5	PF12695.2	gi|146304806|ref|YP_001192122.1|	-	4.4e-22	78.4	0.0	5.2e-22	78.1	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|146304806|ref|YP_001192122.1|	-	3.1e-12	46.5	0.1	2.6e-05	23.9	0.1	2.1	1	1	1	2	2	2	2	alpha/beta	hydrolase	fold
Abhydrolase_4	PF08386.5	gi|146304806|ref|YP_001192122.1|	-	0.00044	20.1	0.0	0.00089	19.1	0.0	1.4	1	0	0	1	1	1	1	TAP-like	protein
Hydrolase_4	PF12146.3	gi|146304806|ref|YP_001192122.1|	-	0.00063	19.5	0.0	0.0011	18.8	0.0	1.4	1	0	0	1	1	1	1	Putative	lysophospholipase
FSH1	PF03959.8	gi|146304806|ref|YP_001192122.1|	-	0.036	13.5	0.0	1.8	7.9	0.0	2.3	2	1	0	2	2	2	0	Serine	hydrolase	(FSH1)
DLH	PF01738.13	gi|146304806|ref|YP_001192122.1|	-	0.047	12.9	0.0	0.086	12.1	0.0	1.4	2	0	0	2	2	2	0	Dienelactone	hydrolase	family
Esterase	PF00756.15	gi|146304806|ref|YP_001192122.1|	-	0.13	11.6	0.4	0.58	9.5	0.3	1.8	2	0	0	2	2	2	0	Putative	esterase
Pyr_redox_2	PF07992.9	gi|146304807|ref|YP_001192123.1|	-	6.4e-10	39.2	0.0	9.2e-10	38.7	0.0	1.2	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DUF1641	PF07849.6	gi|146304808|ref|YP_001192124.1|	-	4.1e-15	55.1	6.8	3.6e-13	48.8	0.1	4.0	3	1	0	3	3	3	2	Protein	of	unknown	function	(DUF1641)
DUF2250	PF10007.4	gi|146304808|ref|YP_001192124.1|	-	0.097	12.5	0.2	19	5.2	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
Sec-ASP3	PF15432.1	gi|146304810|ref|YP_001192126.1|	-	0.042	13.8	0.1	0.079	12.9	0.1	1.4	1	0	0	1	1	1	0	Accessory	Sec	secretory	system	ASP3
Endotoxin_C	PF03944.9	gi|146304810|ref|YP_001192126.1|	-	0.97	9.5	6.4	8.7	6.4	2.0	2.1	1	1	1	2	2	2	0	delta	endotoxin
DHDPS	PF00701.17	gi|146304811|ref|YP_001192127.1|	-	7.5e-53	178.9	0.1	9.2e-53	178.7	0.1	1.0	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Na_H_Exchanger	PF00999.16	gi|146304812|ref|YP_001192128.1|	-	1.6e-34	119.0	45.8	2.2e-34	118.6	31.8	1.1	1	0	0	1	1	1	1	Sodium/hydrogen	exchanger	family
CBS	PF00571.23	gi|146304812|ref|YP_001192128.1|	-	1.9e-13	49.9	0.6	9.4e-07	28.5	0.0	2.8	2	0	0	2	2	2	2	CBS	domain
CoA_binding_3	PF13727.1	gi|146304812|ref|YP_001192128.1|	-	0.72	9.6	7.9	1.3	8.7	0.2	3.4	3	1	0	3	3	3	0	CoA-binding	domain
Fe_dep_repr_C	PF02742.10	gi|146304813|ref|YP_001192129.1|	-	1.1e-17	63.4	0.0	1.6e-17	62.9	0.0	1.2	1	0	0	1	1	1	1	Iron	dependent	repressor,	metal	binding	and	dimerisation	domain
Fe_dep_repress	PF01325.14	gi|146304813|ref|YP_001192129.1|	-	6.3e-06	26.0	0.0	1e-05	25.3	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
MarR	PF01047.17	gi|146304813|ref|YP_001192129.1|	-	8.3e-06	25.4	0.0	1.9e-05	24.2	0.0	1.6	1	0	0	1	1	1	1	MarR	family
HTH_45	PF14947.1	gi|146304813|ref|YP_001192129.1|	-	1.8e-05	24.4	0.0	3.2e-05	23.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix
HemN_C	PF06969.11	gi|146304813|ref|YP_001192129.1|	-	3.6e-05	23.7	0.0	0.00068	19.6	0.0	2.3	2	0	0	2	2	2	1	HemN	C-terminal	domain
LexA_DNA_bind	PF01726.11	gi|146304813|ref|YP_001192129.1|	-	0.00024	20.6	0.0	0.00059	19.3	0.0	1.6	2	0	0	2	2	2	1	LexA	DNA	binding	domain
HTH_27	PF13463.1	gi|146304813|ref|YP_001192129.1|	-	0.00066	19.9	0.0	0.0012	19.1	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF4423	PF14394.1	gi|146304813|ref|YP_001192129.1|	-	0.0038	16.7	0.1	0.0051	16.3	0.0	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4423)
TrmB	PF01978.14	gi|146304813|ref|YP_001192129.1|	-	0.0074	15.9	0.1	0.013	15.2	0.1	1.6	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_Crp_2	PF13545.1	gi|146304813|ref|YP_001192129.1|	-	0.0099	15.6	0.0	0.023	14.4	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
B-block_TFIIIC	PF04182.7	gi|146304813|ref|YP_001192129.1|	-	0.016	15.0	0.0	0.024	14.4	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
PadR	PF03551.9	gi|146304813|ref|YP_001192129.1|	-	0.019	14.7	0.0	0.047	13.4	0.0	1.7	1	1	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
DUF2250	PF10007.4	gi|146304813|ref|YP_001192129.1|	-	0.019	14.8	0.4	0.041	13.7	0.1	1.6	1	1	1	2	2	2	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_IclR	PF09339.5	gi|146304813|ref|YP_001192129.1|	-	0.025	14.1	0.0	0.054	13.1	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304813|ref|YP_001192129.1|	-	0.03	14.0	0.0	0.045	13.4	0.0	1.5	1	0	0	1	1	1	0	MarR	family
Ribosomal_S19e	PF01090.14	gi|146304813|ref|YP_001192129.1|	-	0.044	13.2	0.0	0.065	12.6	0.0	1.3	1	0	0	1	1	1	0	Ribosomal	protein	S19e
HTH_24	PF13412.1	gi|146304813|ref|YP_001192129.1|	-	0.05	12.9	0.0	0.13	11.6	0.0	1.7	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|146304813|ref|YP_001192129.1|	-	0.091	12.8	0.1	0.37	10.9	0.0	2.0	3	0	0	3	3	3	0	Transcriptional	regulator
Adenylsucc_synt	PF00709.16	gi|146304813|ref|YP_001192129.1|	-	0.1	11.2	0.0	0.13	10.8	0.0	1.1	1	0	0	1	1	1	0	Adenylosuccinate	synthetase
IF2_N	PF04760.10	gi|146304813|ref|YP_001192129.1|	-	0.16	11.6	1.0	2.4	7.8	0.0	2.6	2	0	0	2	2	2	0	Translation	initiation	factor	IF-2,	N-terminal	region
SNARE_assoc	PF09335.6	gi|146304814|ref|YP_001192130.1|	-	2.6e-21	76.1	6.9	2.6e-21	76.1	4.8	1.6	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
TauE	PF01925.14	gi|146304815|ref|YP_001192131.1|	-	1.1e-50	172.3	43.3	1.4e-50	171.9	30.0	1.1	1	0	0	1	1	1	1	Sulfite	exporter	TauE/SafE
Glyco_hydro_53	PF07745.8	gi|146304816|ref|YP_001192132.1|	-	0.041	12.6	0.0	0.059	12.1	0.0	1.2	1	0	0	1	1	1	0	Glycosyl	hydrolase	family	53
C_GCAxxG_C_C	PF09719.5	gi|146304816|ref|YP_001192132.1|	-	0.088	12.6	0.1	0.099	12.4	0.0	1.2	1	0	0	1	1	1	0	Putative	redox-active	protein	(C_GCAxxG_C_C)
MFS_1	PF07690.11	gi|146304818|ref|YP_001192134.1|	-	8.8e-48	162.7	75.7	4e-43	147.4	32.2	2.5	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.19	gi|146304818|ref|YP_001192134.1|	-	2e-11	43.1	6.6	2e-11	43.1	4.6	3.0	2	1	1	3	3	3	1	Sugar	(and	other)	transporter
UDG	PF03167.14	gi|146304819|ref|YP_001192135.1|	-	1.9e-40	137.8	0.0	2.4e-40	137.4	0.0	1.1	1	0	0	1	1	1	1	Uracil	DNA	glycosylase	superfamily
DUF3863	PF12979.2	gi|146304819|ref|YP_001192135.1|	-	0.075	11.6	0.0	0.1	11.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	Unknown	Function	with	PDB	structure	(DUF3863)
adh_short_C2	PF13561.1	gi|146304820|ref|YP_001192136.1|	-	1e-28	100.7	0.0	1.2e-28	100.5	0.0	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.20	gi|146304820|ref|YP_001192136.1|	-	2.1e-17	63.5	0.0	3.4e-17	62.8	0.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.5	gi|146304820|ref|YP_001192136.1|	-	4.6e-06	26.4	0.1	8e-06	25.6	0.0	1.3	1	0	0	1	1	1	1	KR	domain
NAD_binding_10	PF13460.1	gi|146304820|ref|YP_001192136.1|	-	0.041	13.8	0.0	0.058	13.3	0.0	1.3	1	0	0	1	1	1	0	NADH(P)-binding
POR	PF01558.13	gi|146304820|ref|YP_001192136.1|	-	0.042	13.7	0.0	0.17	11.7	0.0	1.8	1	1	0	2	2	2	0	Pyruvate	ferredoxin/flavodoxin	oxidoreductase
Aminotran_5	PF00266.14	gi|146304820|ref|YP_001192136.1|	-	0.09	11.4	0.0	0.15	10.8	0.0	1.2	1	0	0	1	1	1	0	Aminotransferase	class-V
Epimerase	PF01370.16	gi|146304820|ref|YP_001192136.1|	-	0.14	11.5	0.0	0.21	10.9	0.0	1.3	1	0	0	1	1	1	0	NAD	dependent	epimerase/dehydratase	family
AAA_21	PF13304.1	gi|146304821|ref|YP_001192137.1|	-	9.2e-19	68.4	9.3	9.2e-19	68.4	6.5	2.6	2	2	0	2	2	2	1	AAA	domain
AAA_15	PF13175.1	gi|146304821|ref|YP_001192137.1|	-	3.4e-18	65.9	10.2	7.7e-13	48.2	0.4	2.3	1	1	0	2	2	2	2	AAA	ATPase	domain
AAA_23	PF13476.1	gi|146304821|ref|YP_001192137.1|	-	1.1e-06	29.0	0.1	1.9e-06	28.3	0.1	1.4	1	0	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146304821|ref|YP_001192137.1|	-	2.6e-06	26.8	0.2	7.5e-06	25.3	0.1	1.8	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
DUF2813	PF11398.3	gi|146304821|ref|YP_001192137.1|	-	0.0093	15.0	0.1	0.41	9.6	0.0	2.2	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF2813)
ABC_tran	PF00005.22	gi|146304821|ref|YP_001192137.1|	-	0.11	12.8	0.2	0.46	10.7	0.1	2.2	2	1	0	2	2	2	0	ABC	transporter
Reprolysin	PF01421.14	gi|146304821|ref|YP_001192137.1|	-	0.11	12.0	0.1	0.23	11.0	0.1	1.5	1	0	0	1	1	1	0	Reprolysin	(M12B)	family	zinc	metalloprotease
ELFV_dehydrog	PF00208.16	gi|146304822|ref|YP_001192138.1|	-	2.8e-67	226.8	0.7	4.5e-67	226.1	0.5	1.3	1	0	0	1	1	1	1	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
ELFV_dehydrog_N	PF02812.13	gi|146304822|ref|YP_001192138.1|	-	2.1e-50	169.6	0.0	5.1e-50	168.4	0.0	1.7	2	0	0	2	2	2	1	Glu/Leu/Phe/Val	dehydrogenase,	dimerisation	domain
2-Hacid_dh_C	PF02826.14	gi|146304822|ref|YP_001192138.1|	-	0.0052	15.9	0.0	0.0089	15.2	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Bac_GDH	PF05088.7	gi|146304822|ref|YP_001192138.1|	-	0.056	10.8	0.0	0.074	10.4	0.0	1.1	1	0	0	1	1	1	0	Bacterial	NAD-glutamate	dehydrogenase
NUDIX	PF00293.23	gi|146304824|ref|YP_001192140.1|	-	1.8e-18	66.4	0.2	2.5e-18	66.0	0.2	1.2	1	0	0	1	1	1	1	NUDIX	domain
tRNA-synt_1e	PF01406.14	gi|146304825|ref|YP_001192141.1|	-	7.7e-125	415.9	2.1	1.2e-123	412.0	0.2	2.3	1	1	1	2	2	2	1	tRNA	synthetases	class	I	(C)	catalytic	domain
tRNA-synt_1g	PF09334.6	gi|146304825|ref|YP_001192141.1|	-	2e-17	62.9	1.8	7.3e-09	34.7	0.2	2.2	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(M)
tRNA-synt_1	PF00133.17	gi|146304825|ref|YP_001192141.1|	-	6.8e-07	27.6	0.1	0.0004	18.5	0.0	2.5	2	1	0	2	2	2	2	tRNA	synthetases	class	I	(I,	L,	M	and	V)
tRNA-synt_1d	PF00750.14	gi|146304825|ref|YP_001192141.1|	-	6e-06	25.3	0.4	0.00033	19.6	0.1	3.1	2	1	1	3	3	3	1	tRNA	synthetases	class	I	(R)
tRNA-synt_1f	PF01921.13	gi|146304825|ref|YP_001192141.1|	-	2.4e-05	23.1	0.6	0.00069	18.3	0.1	2.6	2	1	0	2	2	2	1	tRNA	synthetases	class	I	(K)
DALR_2	PF09190.6	gi|146304825|ref|YP_001192141.1|	-	6.4e-05	23.1	0.5	0.00016	21.8	0.4	1.7	1	0	0	1	1	1	1	DALR	domain
Membrane_bind	PF14564.1	gi|146304825|ref|YP_001192141.1|	-	0.049	13.8	0.1	0.13	12.4	0.0	1.8	2	0	0	2	2	2	0	Membrane	binding
DUF4404	PF14357.1	gi|146304825|ref|YP_001192141.1|	-	0.089	13.2	1.0	62	4.1	0.1	3.4	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4404)
bact-PGI_C	PF10432.4	gi|146304826|ref|YP_001192142.1|	-	2.7e-25	88.8	0.0	1.6e-24	86.3	0.0	2.0	1	1	0	1	1	1	1	Bacterial	phospho-glucose	isomerase	C-terminal	region
DUF2203	PF09969.4	gi|146304827|ref|YP_001192143.1|	-	0.13	12.4	0.1	0.27	11.4	0.0	1.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
Pyr_redox_2	PF07992.9	gi|146304828|ref|YP_001192144.1|	-	8.7e-28	97.5	3.8	1.3e-12	48.0	0.0	3.9	2	1	1	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146304828|ref|YP_001192144.1|	-	7.2e-23	80.7	3.4	3.3e-16	59.4	0.7	3.5	3	0	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_dim	PF02852.17	gi|146304828|ref|YP_001192144.1|	-	8.3e-17	61.2	0.3	4.5e-16	58.8	0.0	2.2	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
Pyr_redox_3	PF13738.1	gi|146304828|ref|YP_001192144.1|	-	9e-10	38.9	1.0	9.1e-05	22.6	0.0	3.3	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.19	gi|146304828|ref|YP_001192144.1|	-	2.3e-09	36.6	8.2	0.024	13.5	0.0	4.2	4	0	0	4	4	4	3	FAD	dependent	oxidoreductase
NAD_binding_8	PF13450.1	gi|146304828|ref|YP_001192144.1|	-	1.1e-07	31.7	0.5	0.002	18.1	0.0	2.7	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
GIDA	PF01134.17	gi|146304828|ref|YP_001192144.1|	-	1.4e-06	27.4	1.2	0.053	12.3	0.1	3.7	4	0	0	4	4	4	2	Glucose	inhibited	division	protein	A
FAD_binding_2	PF00890.19	gi|146304828|ref|YP_001192144.1|	-	1.8e-06	27.0	6.3	0.011	14.5	0.0	3.2	3	0	0	3	3	3	2	FAD	binding	domain
Lycopene_cycl	PF05834.7	gi|146304828|ref|YP_001192144.1|	-	2.6e-06	26.6	2.8	0.0012	17.8	0.0	2.9	3	0	0	3	3	3	2	Lycopene	cyclase	protein
HI0933_like	PF03486.9	gi|146304828|ref|YP_001192144.1|	-	3.2e-06	25.8	6.0	0.0049	15.4	0.0	3.6	3	1	1	4	4	4	2	HI0933-like	protein
TrkA_N	PF02254.13	gi|146304828|ref|YP_001192144.1|	-	0.00021	21.2	0.3	0.026	14.5	0.2	2.4	2	0	0	2	2	2	1	TrkA-N	domain
AlaDh_PNT_C	PF01262.16	gi|146304828|ref|YP_001192144.1|	-	0.00075	19.0	0.4	1	8.9	0.0	2.5	2	0	0	2	2	2	2	Alanine	dehydrogenase/PNT,	C-terminal	domain
Trp_halogenase	PF04820.9	gi|146304828|ref|YP_001192144.1|	-	0.0023	16.6	3.6	0.021	13.4	0.0	2.7	3	0	0	3	3	3	1	Tryptophan	halogenase
K_oxygenase	PF13434.1	gi|146304828|ref|YP_001192144.1|	-	0.0028	16.6	0.0	0.014	14.3	0.0	2.1	1	1	1	3	3	3	1	L-lysine	6-monooxygenase	(NADPH-requiring)
3HCDH_N	PF02737.13	gi|146304828|ref|YP_001192144.1|	-	0.0035	17.0	1.1	0.0041	16.7	0.2	1.6	2	0	0	2	2	1	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NAD_binding_9	PF13454.1	gi|146304828|ref|YP_001192144.1|	-	0.0049	16.6	7.5	3.8	7.2	0.0	4.2	4	0	0	4	4	4	1	FAD-NAD(P)-binding
NAD_binding_2	PF03446.10	gi|146304828|ref|YP_001192144.1|	-	0.0076	16.0	0.1	0.015	15.1	0.1	1.5	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
NAD_Gly3P_dh_N	PF01210.18	gi|146304828|ref|YP_001192144.1|	-	0.0083	15.8	0.9	0.086	12.5	0.2	2.7	3	1	0	3	3	2	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
NAD_binding_7	PF13241.1	gi|146304828|ref|YP_001192144.1|	-	0.0093	16.2	0.1	1.2	9.4	0.1	2.5	2	0	0	2	2	2	1	Putative	NAD(P)-binding
F420_oxidored	PF03807.12	gi|146304828|ref|YP_001192144.1|	-	0.013	15.9	0.7	0.045	14.1	0.1	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
FAD_oxidored	PF12831.2	gi|146304828|ref|YP_001192144.1|	-	0.022	13.8	5.8	0.19	10.7	0.1	2.7	3	0	0	3	3	3	0	FAD	dependent	oxidoreductase
CPSase_L_chain	PF00289.17	gi|146304828|ref|YP_001192144.1|	-	0.086	12.9	0.1	1.4	9.0	0.0	2.4	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	L	chain,	N-terminal	domain
NurA	PF09376.5	gi|146304829|ref|YP_001192145.1|	-	6.9e-20	71.5	0.0	9.2e-20	71.1	0.0	1.2	1	0	0	1	1	1	1	NurA	domain
AAA_10	PF12846.2	gi|146304830|ref|YP_001192146.1|	-	1.2e-18	67.6	0.6	4e-17	62.6	0.4	2.1	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|146304830|ref|YP_001192146.1|	-	1.8e-11	44.2	1.9	7.8e-11	42.2	0.9	2.3	2	1	0	2	2	2	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|146304830|ref|YP_001192146.1|	-	3.7e-08	32.4	0.1	1.2e-07	30.7	0.0	1.8	3	0	0	3	3	3	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
DUF853	PF05872.7	gi|146304830|ref|YP_001192146.1|	-	1.4e-07	30.2	0.0	0.0017	16.7	0.0	2.1	2	0	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
FtsK_SpoIIIE	PF01580.13	gi|146304830|ref|YP_001192146.1|	-	2.5e-07	30.3	0.2	2.5e-05	23.8	0.0	2.8	3	0	0	3	3	3	1	FtsK/SpoIIIE	family
AAA	PF00004.24	gi|146304830|ref|YP_001192146.1|	-	6e-05	23.2	0.3	0.19	11.9	0.0	2.9	4	0	0	4	4	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zot	PF05707.7	gi|146304830|ref|YP_001192146.1|	-	0.00013	21.5	0.1	0.0016	17.9	0.0	2.3	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
AAA_22	PF13401.1	gi|146304830|ref|YP_001192146.1|	-	0.00018	21.6	0.0	1	9.4	0.0	2.6	2	1	0	2	2	2	2	AAA	domain
ResIII	PF04851.10	gi|146304830|ref|YP_001192146.1|	-	0.00072	19.4	0.1	0.088	12.6	0.0	2.4	2	0	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Arch_ATPase	PF01637.13	gi|146304830|ref|YP_001192146.1|	-	0.018	14.7	1.2	0.22	11.1	0.0	2.4	2	1	0	2	2	2	0	Archaeal	ATPase
DUF3116	PF11313.3	gi|146304830|ref|YP_001192146.1|	-	0.035	13.6	0.1	0.097	12.2	0.1	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
Miro	PF08477.8	gi|146304830|ref|YP_001192146.1|	-	0.04	14.4	0.1	0.14	12.6	0.0	1.9	1	0	0	1	1	1	0	Miro-like	protein
T2SE	PF00437.15	gi|146304830|ref|YP_001192146.1|	-	0.13	11.1	0.1	0.24	10.2	0.1	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
4HBT	PF03061.17	gi|146304832|ref|YP_001192148.1|	-	3.2e-21	75.2	0.4	4.5e-09	36.3	0.0	3.1	3	0	0	3	3	3	2	Thioesterase	superfamily
4HBT_2	PF13279.1	gi|146304832|ref|YP_001192148.1|	-	1.5e-05	25.3	0.0	0.19	12.1	0.0	2.2	2	0	0	2	2	2	2	Thioesterase-like	superfamily
Acyl-ACP_TE	PF01643.12	gi|146304832|ref|YP_001192148.1|	-	0.054	12.4	0.0	0.098	11.5	0.0	1.4	1	0	0	1	1	1	0	Acyl-ACP	thioesterase
MFS_1	PF07690.11	gi|146304833|ref|YP_001192149.1|	-	4.5e-13	48.6	22.9	4.5e-13	48.6	15.9	1.5	2	0	0	2	2	2	1	Major	Facilitator	Superfamily
CitMHS	PF03600.11	gi|146304834|ref|YP_001192150.1|	-	8.6e-33	113.3	30.6	9.8e-28	96.7	11.0	2.0	1	1	1	2	2	2	2	Citrate	transporter
Ninjurin	PF04923.7	gi|146304834|ref|YP_001192150.1|	-	0.24	11.1	7.7	7	6.4	5.3	2.6	1	1	0	1	1	1	0	Ninjurin
Acyl-CoA_dh_1	PF00441.19	gi|146304835|ref|YP_001192151.1|	-	2.1e-41	141.5	7.5	3.5e-41	140.8	5.2	1.4	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_2	PF08028.6	gi|146304835|ref|YP_001192151.1|	-	5e-19	68.8	4.1	6.3e-19	68.5	2.0	1.8	2	0	0	2	2	2	1	Acyl-CoA	dehydrogenase,	C-terminal	domain
Acyl-CoA_dh_M	PF02770.14	gi|146304835|ref|YP_001192151.1|	-	7.6e-19	66.9	0.2	1.7e-18	65.8	0.1	1.7	1	0	0	1	1	1	1	Acyl-CoA	dehydrogenase,	middle	domain
Acyl-CoA_dh_N	PF02771.11	gi|146304835|ref|YP_001192151.1|	-	3.4e-17	63.0	0.3	3.4e-17	63.0	0.2	1.9	3	0	0	3	3	3	1	Acyl-CoA	dehydrogenase,	N-terminal	domain
VWA_2	PF13519.1	gi|146304836|ref|YP_001192152.1|	-	9.8e-15	55.0	0.0	1.7e-14	54.3	0.0	1.3	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
Mg_chelatase	PF01078.16	gi|146304836|ref|YP_001192152.1|	-	1.7e-11	43.6	0.2	8.3e-07	28.3	0.0	2.5	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
VWA	PF00092.23	gi|146304836|ref|YP_001192152.1|	-	9.6e-11	41.7	0.0	1.7e-10	40.8	0.0	1.4	1	0	0	1	1	1	1	von	Willebrand	factor	type	A	domain
MCM	PF00493.18	gi|146304836|ref|YP_001192152.1|	-	4.2e-09	35.6	3.1	1.3e-08	34.0	0.5	2.7	2	2	0	2	2	2	1	MCM2/3/5	family
AAA_5	PF07728.9	gi|146304836|ref|YP_001192152.1|	-	1.2e-08	34.8	0.1	0.00041	20.0	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
Mg_chelatase_2	PF13335.1	gi|146304836|ref|YP_001192152.1|	-	2.8e-05	24.4	0.3	0.0001	22.5	0.2	2.0	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
AAA	PF00004.24	gi|146304836|ref|YP_001192152.1|	-	0.00019	21.6	0.2	0.0026	17.9	0.0	2.9	3	1	0	3	3	3	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
VWA_CoxE	PF05762.9	gi|146304836|ref|YP_001192152.1|	-	0.00084	18.5	0.0	0.0018	17.4	0.0	1.5	1	0	0	1	1	1	1	VWA	domain	containing	CoxE-like	protein
AAA_22	PF13401.1	gi|146304836|ref|YP_001192152.1|	-	0.0024	18.0	0.0	0.017	15.2	0.0	2.4	1	1	1	2	2	2	1	AAA	domain
Sigma54_activat	PF00158.21	gi|146304836|ref|YP_001192152.1|	-	0.0024	17.3	0.0	0.13	11.6	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
AAA_16	PF13191.1	gi|146304836|ref|YP_001192152.1|	-	0.0037	17.2	2.1	0.029	14.3	0.0	2.5	2	1	0	2	2	2	1	AAA	ATPase	domain
DUF2057	PF09829.4	gi|146304836|ref|YP_001192152.1|	-	0.01	15.5	0.4	0.04	13.5	0.2	1.9	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2057)
AAA_3	PF07726.6	gi|146304836|ref|YP_001192152.1|	-	0.024	14.2	0.0	2.6	7.6	0.0	2.5	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_17	PF13207.1	gi|146304836|ref|YP_001192152.1|	-	0.052	14.3	0.0	0.29	11.9	0.0	2.4	1	1	0	1	1	1	0	AAA	domain
CobN-Mg_chel	PF02514.11	gi|146304837|ref|YP_001192153.1|	-	0	1104.1	0.0	0	1100.6	0.0	1.9	1	1	0	1	1	1	1	CobN/Magnesium	Chelatase
Arc_PepC_II	PF06847.6	gi|146304838|ref|YP_001192154.1|	-	8.3e-20	71.0	0.0	1.8e-19	69.9	0.0	1.5	1	0	0	1	1	1	1	Archaeal	Peptidase	A24	C-terminus	Type	II
Peptidase_A24	PF01478.13	gi|146304838|ref|YP_001192154.1|	-	1.7e-07	31.3	10.7	1.7e-07	31.3	7.4	1.8	2	0	0	2	2	2	1	Type	IV	leader	peptidase	family
MerC	PF03203.9	gi|146304838|ref|YP_001192154.1|	-	0.98	9.8	7.6	0.26	11.6	3.0	1.7	2	0	0	2	2	2	0	MerC	mercury	resistance	protein
CbiG_N	PF11760.3	gi|146304839|ref|YP_001192155.1|	-	1.3e-17	63.2	0.0	4.4e-17	61.5	0.0	1.9	2	0	0	2	2	2	1	Cobalamin	synthesis	G	N-terminal
CbiG_C	PF01890.11	gi|146304839|ref|YP_001192155.1|	-	6.4e-16	58.7	0.0	1.3e-15	57.7	0.0	1.5	1	0	0	1	1	1	1	Cobalamin	synthesis	G	C-terminus
CbiG_mid	PF11761.3	gi|146304839|ref|YP_001192155.1|	-	0.12	12.6	0.0	0.19	11.9	0.0	1.3	1	0	0	1	1	1	0	Cobalamin	biosynthesis	central	region
TP_methylase	PF00590.15	gi|146304840|ref|YP_001192156.1|	-	9.3e-31	107.1	0.0	1.1e-30	106.9	0.0	1.0	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
Leader_Trp	PF08255.6	gi|146304840|ref|YP_001192156.1|	-	0.14	11.9	0.2	0.34	10.6	0.1	1.7	1	0	0	1	1	1	0	Trp-operon	Leader	Peptide
Peripla_BP_2	PF01497.13	gi|146304841|ref|YP_001192157.1|	-	4.9e-20	71.6	0.0	8.6e-20	70.8	0.0	1.3	1	1	0	1	1	1	1	Periplasmic	binding	protein
CAP_assoc_N	PF14504.1	gi|146304842|ref|YP_001192158.1|	-	0.15	11.7	2.0	0.37	10.4	1.4	1.5	1	1	0	1	1	1	0	CAP-associated	N-terminal
Pkr1	PF08636.5	gi|146304842|ref|YP_001192158.1|	-	0.88	9.6	5.1	0.15	12.1	0.6	1.9	2	0	0	2	2	2	0	ER	protein	Pkr1
HMGL-like	PF00682.14	gi|146304843|ref|YP_001192159.1|	-	1.8e-46	158.7	0.0	3.7e-46	157.7	0.0	1.5	2	0	0	2	2	2	1	HMGL-like
LeuA_dimer	PF08502.5	gi|146304843|ref|YP_001192159.1|	-	6.7e-24	84.1	0.0	1.2e-23	83.3	0.0	1.5	1	0	0	1	1	1	1	LeuA	allosteric	(dimerisation)	domain
E3_UbLigase_EDD	PF11547.3	gi|146304843|ref|YP_001192159.1|	-	0.039	13.4	0.0	2.8	7.5	0.0	2.4	2	0	0	2	2	2	0	E3	ubiquitin	ligase	EDD
UbiA	PF01040.13	gi|146304844|ref|YP_001192160.1|	-	1.1e-29	103.4	23.3	1.4e-29	103.0	16.2	1.1	1	0	0	1	1	1	1	UbiA	prenyltransferase	family
Pyr_redox_2	PF07992.9	gi|146304845|ref|YP_001192161.1|	-	6.3e-06	26.2	0.0	0.00061	19.7	0.0	2.6	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.22	gi|146304845|ref|YP_001192161.1|	-	0.028	14.8	0.1	0.27	11.6	0.0	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
VitK2_biosynth	PF02621.9	gi|146304846|ref|YP_001192162.1|	-	0.085	12.0	0.0	0.72	9.0	0.0	2.2	1	1	1	2	2	2	0	Menaquinone	biosynthesis
CbiC	PF02570.10	gi|146304847|ref|YP_001192163.1|	-	6.4e-32	110.5	0.0	5.1e-30	104.3	0.0	2.0	1	1	0	1	1	1	1	Precorrin-8X	methylmutase
Nol1_Nop2_Fmu	PF01189.12	gi|146304848|ref|YP_001192164.1|	-	1.8e-20	73.4	0.0	2.4e-20	73.1	0.0	1.1	1	0	0	1	1	1	1	NOL1/NOP2/sun	family
Gag_p10	PF02337.12	gi|146304848|ref|YP_001192164.1|	-	0.1	12.3	0.1	0.41	10.4	0.0	2.1	2	1	0	2	2	2	0	Retroviral	GAG	p10	protein
CbiD	PF01888.12	gi|146304849|ref|YP_001192165.1|	-	4.2e-78	261.9	1.7	5.5e-78	261.5	1.2	1.1	1	0	0	1	1	1	1	CbiD
TP_methylase	PF00590.15	gi|146304850|ref|YP_001192166.1|	-	1.4e-25	90.2	0.0	1.8e-25	89.9	0.0	1.1	1	0	0	1	1	1	1	Tetrapyrrole	(Corrin/Porphyrin)	Methylases
T2SE	PF00437.15	gi|146304852|ref|YP_001192168.1|	-	2.5e-39	134.8	0.0	4.5e-39	133.9	0.0	1.4	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|146304852|ref|YP_001192168.1|	-	3e-05	23.5	0.2	0.00033	20.2	0.0	2.1	2	0	0	2	2	2	1	FtsK/SpoIIIE	family
AAA_23	PF13476.1	gi|146304852|ref|YP_001192168.1|	-	5.3e-05	23.6	4.4	0.001	19.4	0.0	3.0	3	0	0	3	3	3	1	AAA	domain
ABC_tran	PF00005.22	gi|146304852|ref|YP_001192168.1|	-	0.00021	21.6	0.0	0.00069	19.9	0.0	1.9	1	0	0	1	1	1	1	ABC	transporter
AAA_10	PF12846.2	gi|146304852|ref|YP_001192168.1|	-	0.00038	19.9	0.0	0.0024	17.3	0.0	2.3	2	1	0	2	2	2	1	AAA-like	domain
AAA_21	PF13304.1	gi|146304852|ref|YP_001192168.1|	-	0.00098	19.1	0.2	0.00098	19.1	0.1	3.2	3	1	0	3	3	3	1	AAA	domain
AAA_29	PF13555.1	gi|146304852|ref|YP_001192168.1|	-	0.0011	18.4	0.0	0.0033	16.9	0.0	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_17	PF13207.1	gi|146304852|ref|YP_001192168.1|	-	0.0015	19.3	0.1	0.005	17.6	0.0	2.0	2	0	0	2	2	1	1	AAA	domain
cobW	PF02492.14	gi|146304852|ref|YP_001192168.1|	-	0.0024	17.3	0.0	0.0057	16.1	0.0	1.6	1	0	0	1	1	1	1	CobW/HypB/UreG,	nucleotide-binding	domain
MobB	PF03205.9	gi|146304852|ref|YP_001192168.1|	-	0.0038	16.9	0.0	0.0099	15.5	0.0	1.8	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|146304852|ref|YP_001192168.1|	-	0.0046	17.1	0.0	0.014	15.5	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
Pox_A32	PF04665.7	gi|146304852|ref|YP_001192168.1|	-	0.0058	15.9	0.0	0.019	14.3	0.0	1.8	1	0	0	1	1	1	1	Poxvirus	A32	protein
Dynamin_N	PF00350.18	gi|146304852|ref|YP_001192168.1|	-	0.0098	15.7	0.3	0.05	13.4	0.0	2.1	2	0	0	2	2	2	1	Dynamin	family
MMR_HSR1	PF01926.18	gi|146304852|ref|YP_001192168.1|	-	0.01	15.7	0.0	0.031	14.2	0.0	1.8	1	0	0	1	1	1	0	50S	ribosome-binding	GTPase
Imm22	PF15592.1	gi|146304852|ref|YP_001192168.1|	-	0.023	15.0	2.8	0.1	12.9	0.1	2.7	2	1	0	2	2	2	0	Immunity	protein	22
Miro	PF08477.8	gi|146304852|ref|YP_001192168.1|	-	0.024	15.1	0.0	0.07	13.6	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
AAA_33	PF13671.1	gi|146304852|ref|YP_001192168.1|	-	0.051	13.4	0.0	0.089	12.6	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_16	PF13191.1	gi|146304852|ref|YP_001192168.1|	-	0.053	13.4	0.0	0.1	12.5	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
Zeta_toxin	PF06414.7	gi|146304852|ref|YP_001192168.1|	-	0.059	12.4	0.0	0.12	11.4	0.0	1.4	1	0	0	1	1	1	0	Zeta	toxin
NACHT	PF05729.7	gi|146304852|ref|YP_001192168.1|	-	0.069	12.8	0.0	0.41	10.3	0.0	2.0	2	0	0	2	2	2	0	NACHT	domain
AAA_18	PF13238.1	gi|146304852|ref|YP_001192168.1|	-	0.07	13.4	0.9	0.65	10.3	0.0	2.8	3	0	0	3	3	3	0	AAA	domain
DUF87	PF01935.12	gi|146304852|ref|YP_001192168.1|	-	0.074	12.8	2.4	0.14	11.9	0.0	2.4	3	1	0	3	3	2	0	Domain	of	unknown	function	DUF87
DUF258	PF03193.11	gi|146304852|ref|YP_001192168.1|	-	0.077	12.1	0.0	0.22	10.7	0.0	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function,	DUF258
TrwB_AAD_bind	PF10412.4	gi|146304852|ref|YP_001192168.1|	-	0.085	11.4	0.0	0.14	10.7	0.0	1.2	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ResIII	PF04851.10	gi|146304852|ref|YP_001192168.1|	-	0.088	12.6	0.0	0.18	11.6	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
ATP_bind_1	PF03029.12	gi|146304852|ref|YP_001192168.1|	-	0.12	11.9	0.0	0.24	10.8	0.0	1.5	1	0	0	1	1	1	0	Conserved	hypothetical	ATP	binding	protein
SMC_N	PF02463.14	gi|146304852|ref|YP_001192168.1|	-	0.12	11.5	0.0	0.6	9.2	0.0	2.1	3	0	0	3	3	3	0	RecF/RecN/SMC	N	terminal	domain
TMC	PF07810.8	gi|146304853|ref|YP_001192169.1|	-	0.11	12.9	1.8	0.38	11.2	1.3	2.0	1	0	0	1	1	1	0	TMC	domain
Bundlin	PF05307.6	gi|146304854|ref|YP_001192170.1|	-	0.019	14.8	1.0	0.024	14.5	0.6	1.4	1	1	0	1	1	1	0	Bundlin
DUF3595	PF12166.3	gi|146304854|ref|YP_001192170.1|	-	0.055	12.2	0.3	0.059	12.1	0.2	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3595)
Methyltransf_18	PF12847.2	gi|146304855|ref|YP_001192171.1|	-	4e-10	40.2	0.0	8.8e-10	39.1	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146304855|ref|YP_001192171.1|	-	6.4e-08	32.4	0.0	8.4e-08	32.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146304855|ref|YP_001192171.1|	-	5.5e-06	26.0	0.0	9.3e-06	25.3	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
FtsJ	PF01728.14	gi|146304855|ref|YP_001192171.1|	-	0.00025	21.0	0.0	0.0037	17.2	0.0	2.0	1	1	0	1	1	1	1	FtsJ-like	methyltransferase
Methyltransf_11	PF08241.7	gi|146304855|ref|YP_001192171.1|	-	0.00041	20.7	0.1	0.0012	19.3	0.0	1.8	1	1	0	1	1	1	1	Methyltransferase	domain
CMAS	PF02353.15	gi|146304855|ref|YP_001192171.1|	-	0.00067	18.8	0.1	0.0036	16.4	0.0	1.9	1	1	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
GCD14	PF08704.5	gi|146304855|ref|YP_001192171.1|	-	0.0024	17.3	0.0	0.028	13.9	0.0	2.0	2	0	0	2	2	2	1	tRNA	methyltransferase	complex	GCD14	subunit
PCMT	PF01135.14	gi|146304855|ref|YP_001192171.1|	-	0.012	15.1	0.0	0.02	14.4	0.0	1.4	1	1	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
RrnaAD	PF00398.15	gi|146304855|ref|YP_001192171.1|	-	0.032	13.2	0.0	0.034	13.1	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
MTS	PF05175.9	gi|146304855|ref|YP_001192171.1|	-	0.053	12.8	0.2	0.61	9.4	0.1	2.1	1	1	0	1	1	1	0	Methyltransferase	small	domain
Methyltransf_26	PF13659.1	gi|146304855|ref|YP_001192171.1|	-	0.06	13.3	0.1	0.13	12.3	0.1	1.7	1	1	0	1	1	1	0	Methyltransferase	domain
HTH_45	PF14947.1	gi|146304856|ref|YP_001192172.1|	-	2.2e-06	27.3	0.0	2.9e-06	26.9	0.0	1.1	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF505	PF04458.7	gi|146304856|ref|YP_001192172.1|	-	0.00011	20.5	0.2	0.00013	20.2	0.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF505)
PadR	PF03551.9	gi|146304856|ref|YP_001192172.1|	-	0.0013	18.4	0.0	0.0031	17.2	0.0	1.8	1	1	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|146304856|ref|YP_001192172.1|	-	0.0085	15.7	0.4	0.016	14.8	0.0	1.6	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
DUF2250	PF10007.4	gi|146304856|ref|YP_001192172.1|	-	0.0087	15.9	0.1	4.2	7.3	0.0	2.2	1	1	1	2	2	2	2	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
DUF4364	PF14277.1	gi|146304856|ref|YP_001192172.1|	-	0.013	15.1	0.0	0.013	15.1	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
DUF3116	PF11313.3	gi|146304856|ref|YP_001192172.1|	-	0.02	14.4	0.0	0.027	14.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3116)
DUF1495	PF07381.6	gi|146304856|ref|YP_001192172.1|	-	0.099	12.3	0.1	0.15	11.7	0.0	1.3	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain	(DUF1495)
YcfA	PF07927.7	gi|146304856|ref|YP_001192172.1|	-	0.11	12.3	0.2	0.2	11.5	0.1	1.6	1	1	0	1	1	1	0	YcfA-like	protein
HhH-GPD	PF00730.20	gi|146304857|ref|YP_001192173.1|	-	9.8e-18	64.4	0.0	1.4e-17	63.8	0.0	1.2	1	0	0	1	1	1	1	HhH-GPD	superfamily	base	excision	DNA	repair	protein
HHH	PF00633.18	gi|146304857|ref|YP_001192173.1|	-	1.4e-05	24.4	0.2	5.8e-05	22.5	0.1	2.1	1	0	0	1	1	1	1	Helix-hairpin-helix	motif
EndIII_4Fe-2S	PF10576.4	gi|146304857|ref|YP_001192173.1|	-	0.0033	17.5	9.2	0.0061	16.7	6.4	1.5	1	0	0	1	1	1	1	Iron-sulfur	binding	domain	of	endonuclease	III
HHH_5	PF14520.1	gi|146304857|ref|YP_001192173.1|	-	0.021	14.9	0.3	0.046	13.9	0.2	1.7	1	1	0	1	1	1	0	Helix-hairpin-helix	domain
DUF2400	PF09674.5	gi|146304857|ref|YP_001192173.1|	-	0.13	11.9	0.0	0.25	11.0	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2400)
ParBc	PF02195.13	gi|146304858|ref|YP_001192174.1|	-	2.9e-13	49.7	0.1	4.5e-13	49.1	0.0	1.3	1	0	0	1	1	1	1	ParB-like	nuclease	domain
DUF1015	PF06245.6	gi|146304858|ref|YP_001192174.1|	-	0.0041	15.6	0.8	0.042	12.3	0.1	2.2	2	1	0	2	2	2	1	Protein	of	unknown	function	(DUF1015)
ParBc_2	PF08857.6	gi|146304858|ref|YP_001192174.1|	-	0.06	13.1	0.0	0.072	12.9	0.0	1.2	1	0	0	1	1	1	0	Putative	ParB-like	nuclease
Topo_C_assoc	PF14370.1	gi|146304858|ref|YP_001192174.1|	-	0.084	12.5	0.3	0.48	10.1	0.0	2.1	2	0	0	2	2	2	0	C-terminal	topoisomerase	domain
Glyco_tranf_2_3	PF13641.1	gi|146304859|ref|YP_001192175.1|	-	2.5e-26	92.9	0.0	3.2e-26	92.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Glyco_trans_2_3	PF13632.1	gi|146304859|ref|YP_001192175.1|	-	8.1e-21	74.6	0.1	8.1e-21	74.6	0.0	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	group	2
Glycos_transf_2	PF00535.21	gi|146304859|ref|YP_001192175.1|	-	2.4e-19	69.6	0.0	3.4e-19	69.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_transf_21	PF13506.1	gi|146304859|ref|YP_001192175.1|	-	2.1e-12	46.6	0.0	4.2e-12	45.6	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferase	family	21
Glyco_tranf_2_2	PF10111.4	gi|146304859|ref|YP_001192175.1|	-	2.4e-05	23.5	0.0	3.3e-05	23.1	0.0	1.1	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Cellulose_synt	PF03552.9	gi|146304859|ref|YP_001192175.1|	-	0.041	12.2	0.9	0.075	11.3	0.5	1.4	1	1	1	2	2	2	0	Cellulose	synthase
DEAD_assoc	PF08494.6	gi|146304860|ref|YP_001192176.1|	-	1.2e-56	191.4	0.0	2.2e-56	190.5	0.0	1.5	1	0	0	1	1	1	1	DEAD/H	associated
DEAD	PF00270.24	gi|146304860|ref|YP_001192176.1|	-	3.5e-29	101.4	0.0	1.2e-27	96.4	0.0	2.7	3	0	0	3	3	3	1	DEAD/DEAH	box	helicase
Helicase_C	PF00271.26	gi|146304860|ref|YP_001192176.1|	-	6.4e-15	54.7	0.0	1.1e-13	50.8	0.0	2.5	2	0	0	2	2	2	1	Helicase	conserved	C-terminal	domain
ResIII	PF04851.10	gi|146304860|ref|YP_001192176.1|	-	2.2e-07	30.8	0.0	9.4e-07	28.8	0.0	2.1	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
AAA_22	PF13401.1	gi|146304860|ref|YP_001192176.1|	-	0.028	14.5	0.3	5.7	7.0	0.0	3.4	2	1	0	2	2	2	0	AAA	domain
SNF2_N	PF00176.18	gi|146304860|ref|YP_001192176.1|	-	0.029	13.1	0.0	0.062	12.0	0.0	1.5	1	0	0	1	1	1	0	SNF2	family	N-terminal	domain
AAA_19	PF13245.1	gi|146304860|ref|YP_001192176.1|	-	0.043	13.5	0.0	6.5	6.5	0.0	3.0	3	0	0	3	3	3	0	Part	of	AAA	domain
UvrD-helicase	PF00580.16	gi|146304860|ref|YP_001192176.1|	-	0.052	12.8	0.6	4.5	6.4	0.1	2.5	2	0	0	2	2	2	0	UvrD/REP	helicase	N-terminal	domain
CcmH	PF03918.9	gi|146304860|ref|YP_001192176.1|	-	0.13	11.2	0.3	2.1	7.2	0.1	2.4	2	0	0	2	2	2	0	Cytochrome	C	biogenesis	protein
Prok-JAB	PF14464.1	gi|146304861|ref|YP_001192177.1|	-	4.4e-05	22.9	0.0	9.7e-05	21.8	0.0	1.5	1	1	0	1	1	1	1	Prokaryotic	homologs	of	the	JAB	domain
JAB	PF01398.16	gi|146304861|ref|YP_001192177.1|	-	0.099	12.3	0.1	0.16	11.7	0.0	1.2	1	0	0	1	1	1	0	JAB1/Mov34/MPN/PAD-1	ubiquitin	protease
HrcA_DNA-bdg	PF03444.10	gi|146304862|ref|YP_001192178.1|	-	2.5e-35	119.7	0.3	1.2e-34	117.5	0.1	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
CBS	PF00571.23	gi|146304862|ref|YP_001192178.1|	-	7.8e-29	99.1	3.6	7.6e-14	51.2	1.1	2.5	2	0	0	2	2	2	2	CBS	domain
Rrf2	PF02082.15	gi|146304862|ref|YP_001192178.1|	-	1.6e-08	34.5	0.1	1e-07	31.9	0.0	2.3	2	0	0	2	2	2	1	Transcriptional	regulator
HTH_11	PF08279.7	gi|146304862|ref|YP_001192178.1|	-	0.0097	15.5	0.1	0.024	14.2	0.1	1.7	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.14	gi|146304862|ref|YP_001192178.1|	-	0.039	13.6	1.1	0.41	10.3	0.1	2.5	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
Peptidase_S29	PF02907.10	gi|146304862|ref|YP_001192178.1|	-	0.048	13.1	0.0	0.086	12.3	0.0	1.3	1	0	0	1	1	1	0	Hepatitis	C	virus	NS3	protease
Penicillinase_R	PF03965.11	gi|146304862|ref|YP_001192178.1|	-	0.048	13.7	0.0	12	6.0	0.0	2.4	2	0	0	2	2	2	0	Penicillinase	repressor
TFIIH_BTF_p62_N	PF08567.6	gi|146304862|ref|YP_001192178.1|	-	0.065	12.8	0.0	0.13	11.9	0.0	1.5	1	0	0	1	1	1	0	TFIIH	p62	subunit,	N-terminal	domain
HTH_IclR	PF09339.5	gi|146304862|ref|YP_001192178.1|	-	0.12	11.9	0.0	0.63	9.6	0.0	2.2	3	0	0	3	3	3	0	IclR	helix-turn-helix	domain
DUF2192	PF09958.4	gi|146304863|ref|YP_001192179.1|	-	6.4e-88	293.8	1.4	7.2e-88	293.6	0.9	1.0	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	archaea	(DUF2192)
Sirohm_synth_C	PF14823.1	gi|146304863|ref|YP_001192179.1|	-	0.038	13.2	0.0	0.088	12.1	0.0	1.5	1	0	0	1	1	1	0	Sirohaem	biosynthesis	protein	C-terminal
G6PD_bact	PF10786.4	gi|146304864|ref|YP_001192180.1|	-	0.091	12.1	1.4	0.13	11.7	1.0	1.2	1	0	0	1	1	1	0	Glucose-6-phosphate	1-dehydrogenase	(EC	1.1.1.49)
HTH_Tnp_ISL3	PF13542.1	gi|146304865|ref|YP_001192181.1|	-	8.8e-05	21.6	0.0	0.00019	20.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	transposase	family	ISL3
HTH_28	PF13518.1	gi|146304865|ref|YP_001192181.1|	-	0.00054	19.9	0.1	0.0038	17.2	0.0	2.1	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_Tnp_1	PF01527.15	gi|146304865|ref|YP_001192181.1|	-	0.00078	19.3	0.1	0.0011	18.9	0.1	1.5	1	1	0	1	1	1	1	Transposase
HTH_23	PF13384.1	gi|146304865|ref|YP_001192181.1|	-	0.0013	18.3	0.1	0.0038	16.8	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
HTH_38	PF13936.1	gi|146304865|ref|YP_001192181.1|	-	0.002	17.6	0.1	0.0082	15.6	0.0	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_3	PF01381.17	gi|146304865|ref|YP_001192181.1|	-	0.0025	17.5	0.0	0.0057	16.4	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix
HTH_19	PF12844.2	gi|146304865|ref|YP_001192181.1|	-	0.0026	17.7	0.0	0.0064	16.5	0.0	1.7	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|146304865|ref|YP_001192181.1|	-	0.0035	17.4	0.2	0.0092	16.1	0.0	1.7	2	0	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_11	PF08279.7	gi|146304865|ref|YP_001192181.1|	-	0.015	14.9	1.2	0.039	13.5	0.0	2.2	2	1	0	2	2	2	0	HTH	domain
HTH_6	PF01418.12	gi|146304865|ref|YP_001192181.1|	-	0.017	14.8	0.0	0.054	13.2	0.0	1.9	1	0	0	1	1	1	0	Helix-turn-helix	domain,	rpiR	family
HTH_31	PF13560.1	gi|146304865|ref|YP_001192181.1|	-	0.028	14.6	0.0	0.045	13.9	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
NUMOD1	PF07453.8	gi|146304865|ref|YP_001192181.1|	-	0.046	13.5	0.0	0.094	12.5	0.0	1.6	1	0	0	1	1	1	0	NUMOD1	domain
Trp_repressor	PF01371.14	gi|146304865|ref|YP_001192181.1|	-	0.067	13.1	0.2	0.33	10.8	0.0	2.1	1	1	1	2	2	2	0	Trp	repressor	protein
MarR_2	PF12802.2	gi|146304865|ref|YP_001192181.1|	-	0.079	12.6	0.2	2.1	8.0	0.0	2.4	2	0	0	2	2	2	0	MarR	family
HTH_AsnC-type	PF13404.1	gi|146304865|ref|YP_001192181.1|	-	0.8	9.2	0.1	0.8	9.2	0.0	3.1	3	1	1	4	4	4	0	AsnC-type	helix-turn-helix	domain
HTH_5	PF01022.15	gi|146304865|ref|YP_001192181.1|	-	5.9	6.6	6.2	1.1	8.9	0.1	2.9	4	1	1	5	5	5	0	Bacterial	regulatory	protein,	arsR	family
ADH_N	PF08240.7	gi|146304866|ref|YP_001192182.1|	-	0.041	13.6	0.2	0.68	9.7	0.1	2.2	1	1	0	1	1	1	0	Alcohol	dehydrogenase	GroES-like	domain
RNA_polI_A14	PF08203.6	gi|146304866|ref|YP_001192182.1|	-	0.055	13.6	0.0	0.11	12.7	0.0	1.5	1	0	0	1	1	1	0	Yeast	RNA	polymerase	I	subunit	RPA14
Aminotran_1_2	PF00155.16	gi|146304867|ref|YP_001192183.1|	-	5.8e-42	143.9	0.0	6.8e-42	143.7	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_MocR	PF12897.2	gi|146304867|ref|YP_001192183.1|	-	8.8e-09	34.4	0.0	1.1e-08	34.0	0.0	1.3	1	0	0	1	1	1	1	Alanine-glyoxylate	amino-transferase
Cys_Met_Meta_PP	PF01053.15	gi|146304867|ref|YP_001192183.1|	-	0.053	11.8	0.0	0.083	11.1	0.0	1.2	1	0	0	1	1	1	0	Cys/Met	metabolism	PLP-dependent	enzyme
MoCF_biosynth	PF00994.19	gi|146304868|ref|YP_001192184.1|	-	3.5e-31	107.5	0.1	8.5e-31	106.3	0.0	1.6	2	0	0	2	2	2	1	Probable	molybdopterin	binding	domain
B12-binding	PF02310.14	gi|146304868|ref|YP_001192184.1|	-	0.073	12.9	0.0	0.5	10.2	0.0	2.2	2	0	0	2	2	2	0	B12	binding	domain
KH_5	PF13184.1	gi|146304868|ref|YP_001192184.1|	-	0.085	12.6	0.9	2.2	8.1	0.1	2.4	2	0	0	2	2	2	0	NusA-like	KH	domain
Abhydrolase_6	PF12697.2	gi|146304869|ref|YP_001192185.1|	-	1.5e-31	110.1	0.0	1.7e-31	109.8	0.0	1.1	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.15	gi|146304869|ref|YP_001192185.1|	-	6.9e-17	61.7	0.0	3.3e-16	59.5	0.0	1.8	1	1	0	2	2	2	1	alpha/beta	hydrolase	fold
Abhydrolase_5	PF12695.2	gi|146304869|ref|YP_001192185.1|	-	2.1e-14	53.5	0.0	3e-14	53.0	0.0	1.3	1	1	0	1	1	1	1	Alpha/beta	hydrolase	family
Hydrolase_4	PF12146.3	gi|146304869|ref|YP_001192185.1|	-	7.8e-06	25.6	0.0	1.7e-05	24.5	0.0	1.5	1	0	0	1	1	1	1	Putative	lysophospholipase
Ndr	PF03096.9	gi|146304869|ref|YP_001192185.1|	-	0.00049	18.6	0.0	0.00098	17.6	0.0	1.5	2	0	0	2	2	2	1	Ndr	family
Thioesterase	PF00975.15	gi|146304869|ref|YP_001192185.1|	-	0.017	15.3	0.0	0.027	14.7	0.0	1.4	1	1	0	1	1	1	0	Thioesterase	domain
DUF915	PF06028.6	gi|146304869|ref|YP_001192185.1|	-	0.18	10.8	0.0	0.98	8.4	0.0	1.9	2	0	0	2	2	2	0	Alpha/beta	hydrolase	of	unknown	function	(DUF915)
B5	PF03484.10	gi|146304870|ref|YP_001192186.1|	-	6.4e-17	61.1	0.6	7.6e-16	57.7	0.1	2.5	2	0	0	2	2	2	1	tRNA	synthetase	B5	domain
B3_4	PF03483.12	gi|146304870|ref|YP_001192186.1|	-	9.4e-13	47.9	0.0	1.8e-12	47.0	0.0	1.4	1	0	0	1	1	1	1	B3/4	domain
tRNA-synt_2d	PF01409.15	gi|146304870|ref|YP_001192186.1|	-	0.034	13.3	0.0	0.15	11.1	0.0	1.9	2	0	0	2	2	2	0	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2d	PF01409.15	gi|146304871|ref|YP_001192187.1|	-	3.8e-80	268.6	0.0	5e-80	268.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	II	core	domain	(F)
HTH_IclR	PF09339.5	gi|146304871|ref|YP_001192187.1|	-	3.1e-08	33.0	0.0	1e-07	31.4	0.0	1.9	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
TrmB	PF01978.14	gi|146304871|ref|YP_001192187.1|	-	6e-08	32.2	3.5	5.6e-07	29.1	0.1	3.3	4	0	0	4	4	4	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146304871|ref|YP_001192187.1|	-	8.5e-08	31.4	0.1	1.7e-07	30.4	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
tRNA-synt_2	PF00152.15	gi|146304871|ref|YP_001192187.1|	-	1.4e-07	30.6	0.2	0.0036	16.1	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_27	PF13463.1	gi|146304871|ref|YP_001192187.1|	-	8.9e-06	25.9	0.8	0.00028	21.1	0.0	2.9	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.2	gi|146304871|ref|YP_001192187.1|	-	0.00012	21.6	0.0	0.00061	19.4	0.0	2.3	1	0	0	1	1	1	1	MarR	family
MarR	PF01047.17	gi|146304871|ref|YP_001192187.1|	-	0.00099	18.7	0.2	0.0026	17.4	0.1	1.8	2	0	0	2	2	1	1	MarR	family
DUF2250	PF10007.4	gi|146304871|ref|YP_001192187.1|	-	0.0043	16.9	0.6	0.0096	15.8	0.0	1.9	2	0	0	2	2	2	1	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.2	gi|146304871|ref|YP_001192187.1|	-	0.0059	16.3	0.8	0.016	15.0	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
Rrf2	PF02082.15	gi|146304871|ref|YP_001192187.1|	-	0.011	15.8	0.0	0.026	14.6	0.0	1.6	1	0	0	1	1	1	0	Transcriptional	regulator
Penicillinase_R	PF03965.11	gi|146304871|ref|YP_001192187.1|	-	0.017	15.2	0.1	0.055	13.5	0.1	1.9	1	0	0	1	1	1	0	Penicillinase	repressor
HTH_9	PF08221.6	gi|146304871|ref|YP_001192187.1|	-	0.019	14.8	0.0	0.057	13.3	0.0	1.8	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_34	PF13601.1	gi|146304871|ref|YP_001192187.1|	-	0.028	14.4	0.0	0.068	13.2	0.0	1.7	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_11	PF08279.7	gi|146304871|ref|YP_001192187.1|	-	0.042	13.5	1.3	0.073	12.7	0.2	2.0	2	0	0	2	2	1	0	HTH	domain
TFIIE_alpha	PF02002.12	gi|146304871|ref|YP_001192187.1|	-	0.053	13.0	0.1	0.053	13.0	0.1	2.8	3	0	0	3	3	3	0	TFIIE	alpha	subunit
PadR	PF03551.9	gi|146304871|ref|YP_001192187.1|	-	0.078	12.7	0.0	0.22	11.3	0.0	1.8	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
HTH_5	PF01022.15	gi|146304871|ref|YP_001192187.1|	-	0.1	12.2	0.0	1.6	8.4	0.0	2.4	2	0	0	2	2	2	0	Bacterial	regulatory	protein,	arsR	family
Lactamase_B_3	PF13483.1	gi|146304872|ref|YP_001192188.1|	-	1.7e-17	63.6	0.2	2.3e-17	63.2	0.1	1.2	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_2	PF12706.2	gi|146304872|ref|YP_001192188.1|	-	3.6e-14	52.7	0.1	4.7e-14	52.3	0.1	1.1	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B	PF00753.22	gi|146304872|ref|YP_001192188.1|	-	6e-07	29.3	1.7	1e-06	28.5	1.2	1.3	1	1	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Peptidase_M24	PF00557.19	gi|146304873|ref|YP_001192189.1|	-	1.2e-43	149.0	0.1	1.4e-43	148.8	0.1	1.1	1	0	0	1	1	1	1	Metallopeptidase	family	M24
DUF1512	PF07431.7	gi|146304874|ref|YP_001192190.1|	-	4.2e-133	443.5	10.4	5.1e-133	443.2	7.2	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1512)
DUF2387	PF09526.5	gi|146304875|ref|YP_001192191.1|	-	0.1	12.5	0.1	0.16	11.9	0.0	1.4	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
HD	PF01966.17	gi|154819280|ref|YP_001192192.2|	-	1.3e-09	38.1	0.1	3.9e-09	36.5	0.1	1.8	2	0	0	2	2	2	1	HD	domain
Hydrolase_3	PF08282.7	gi|146304877|ref|YP_001192193.1|	-	5.9e-29	101.4	0.0	6.7e-16	58.6	0.0	2.0	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.2	gi|146304877|ref|YP_001192193.1|	-	1.1e-10	42.0	2.2	2e-08	34.6	0.0	2.4	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.21	gi|146304877|ref|YP_001192193.1|	-	4.2e-09	37.1	0.0	4.8e-06	27.1	0.0	2.3	1	1	1	2	2	2	2	haloacid	dehalogenase-like	hydrolase
S6PP	PF05116.8	gi|146304877|ref|YP_001192193.1|	-	2.1e-07	30.5	0.0	1.4e-05	24.5	0.0	2.1	2	0	0	2	2	2	1	Sucrose-6F-phosphate	phosphohydrolase
Trehalose_PPase	PF02358.11	gi|146304877|ref|YP_001192193.1|	-	0.00023	20.1	0.0	0.2	10.5	0.0	2.1	2	0	0	2	2	2	2	Trehalose-phosphatase
HAD_2	PF13419.1	gi|146304877|ref|YP_001192193.1|	-	0.00042	20.5	0.2	0.14	12.3	0.0	2.9	2	2	1	3	3	3	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.1	gi|146304877|ref|YP_001192193.1|	-	0.0013	18.5	0.0	0.0028	17.5	0.0	1.6	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.1	gi|146304877|ref|YP_001192193.1|	-	0.0019	17.9	0.1	0.036	13.7	0.0	2.3	2	0	0	2	2	2	1	HAD-hyrolase-like
DUF4035	PF13227.1	gi|146304877|ref|YP_001192193.1|	-	0.053	12.8	0.1	0.55	9.6	0.0	2.2	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF4035)
tRNA-synt_1c	PF00749.16	gi|146304878|ref|YP_001192194.1|	-	4.5e-76	255.4	0.6	6.4e-76	255.0	0.0	1.5	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	catalytic	domain
tRNA-synt_1c_C	PF03950.13	gi|146304878|ref|YP_001192194.1|	-	2.4e-23	82.6	0.7	1.9e-22	79.7	0.0	2.3	2	0	0	2	2	2	1	tRNA	synthetases	class	I	(E	and	Q),	anti-codon	binding	domain
tRNA-synt_1e	PF01406.14	gi|146304878|ref|YP_001192194.1|	-	0.032	13.3	0.0	0.12	11.5	0.0	2.0	1	1	0	1	1	1	0	tRNA	synthetases	class	I	(C)	catalytic	domain
Ribosomal_L7Ae	PF01248.21	gi|146304879|ref|YP_001192195.1|	-	5.6e-31	105.9	0.6	6.8e-31	105.6	0.4	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L7Ae/L30e/S12e/Gadd45	family
PELOTA_1	PF15608.1	gi|146304879|ref|YP_001192195.1|	-	0.0063	16.2	0.0	0.0097	15.6	0.0	1.3	1	0	0	1	1	1	1	PELOTA	RNA	binding	domain
DUF1269	PF06897.7	gi|146304879|ref|YP_001192195.1|	-	0.007	16.3	0.6	1.9	8.5	0.0	2.3	2	1	0	2	2	2	2	Protein	of	unknown	function	(DUF1269)
RNase_P_pop3	PF08228.6	gi|146304879|ref|YP_001192195.1|	-	0.036	13.8	0.0	0.04	13.7	0.0	1.1	1	0	0	1	1	1	0	RNase	P	subunit	Pop3
YtxH	PF12732.2	gi|146304879|ref|YP_001192195.1|	-	0.036	14.4	3.1	0.084	13.2	0.2	2.1	2	0	0	2	2	2	0	YtxH-like	protein
Glycos_transf_4	PF00953.16	gi|146304881|ref|YP_001192197.1|	-	3.6e-31	108.0	19.7	3.6e-31	108.0	13.6	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	family	4
polyprenyl_synt	PF00348.12	gi|146304882|ref|YP_001192198.1|	-	7.8e-77	257.6	0.1	9.8e-77	257.3	0.0	1.2	1	0	0	1	1	1	1	Polyprenyl	synthetase
FMN_dh	PF01070.13	gi|146304883|ref|YP_001192199.1|	-	7.7e-28	97.3	0.0	1.1e-19	70.4	0.0	2.0	1	1	1	2	2	2	2	FMN-dependent	dehydrogenase
IMPDH	PF00478.20	gi|146304883|ref|YP_001192199.1|	-	2.4e-06	26.6	0.4	0.00095	18.1	0.1	3.2	1	1	2	3	3	3	2	IMP	dehydrogenase	/	GMP	reductase	domain
Glu_synthase	PF01645.12	gi|146304883|ref|YP_001192199.1|	-	0.0078	15.1	0.4	0.025	13.4	0.3	1.8	1	1	0	1	1	1	1	Conserved	region	in	glutamate	synthase
DHO_dh	PF01180.16	gi|146304883|ref|YP_001192199.1|	-	0.09	11.7	0.1	0.32	9.8	0.0	1.8	2	0	0	2	2	2	0	Dihydroorotate	dehydrogenase
AA_kinase	PF00696.23	gi|146304884|ref|YP_001192200.1|	-	5.3e-21	75.2	0.0	7.3e-21	74.8	0.0	1.2	1	0	0	1	1	1	1	Amino	acid	kinase	family
Memo	PF01875.12	gi|146304886|ref|YP_001192202.1|	-	6e-85	284.4	0.0	6.8e-85	284.2	0.0	1.0	1	0	0	1	1	1	1	Memo-like	protein
Ribosomal_S2	PF00318.15	gi|146304887|ref|YP_001192203.1|	-	2.5e-39	134.6	0.0	7.5e-19	67.7	0.0	2.0	1	1	1	2	2	2	2	Ribosomal	protein	S2
Peripla_BP_4	PF13407.1	gi|146304887|ref|YP_001192203.1|	-	0.018	14.4	0.1	0.024	13.9	0.0	1.1	1	0	0	1	1	1	0	Periplasmic	binding	protein	domain
DUF3945	PF13101.1	gi|146304887|ref|YP_001192203.1|	-	0.15	11.4	2.5	0.31	10.3	0.6	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3945)
RNA_pol_N	PF01194.12	gi|146304888|ref|YP_001192204.1|	-	1.6e-29	101.6	0.3	1.8e-29	101.5	0.2	1.0	1	0	0	1	1	1	1	RNA	polymerases	N	/	8	kDa	subunit
Chordopox_RPO7	PF05864.7	gi|146304888|ref|YP_001192204.1|	-	0.0083	16.2	1.2	0.02	14.9	0.8	1.6	1	1	0	1	1	1	1	Chordopoxvirus	DNA-directed	RNA	polymerase	7	kDa	polypeptide	(RPO7)
Ribosomal_S9	PF00380.14	gi|146304889|ref|YP_001192205.1|	-	1e-29	103.2	0.1	1.2e-29	103.0	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S9/S16
Ribosomal_L13	PF00572.13	gi|146304890|ref|YP_001192206.1|	-	1.4e-25	89.8	0.1	1.9e-25	89.4	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L13
DUF3659	PF12396.3	gi|146304890|ref|YP_001192206.1|	-	1.2	8.8	4.4	22	4.8	0.7	3.0	2	2	1	3	3	3	0	Protein	of	unknown	function	(DUF3659)
Ribosomal_L18e	PF00828.14	gi|146304891|ref|YP_001192207.1|	-	2.2e-14	53.9	0.3	2.7e-14	53.6	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L18e/L15
RNA_pol_A_bac	PF01000.21	gi|146304892|ref|YP_001192208.1|	-	1.8e-30	105.3	0.1	4e-30	104.2	0.0	1.6	2	0	0	2	2	2	1	RNA	polymerase	Rpb3/RpoA	insert	domain
RNA_pol_L	PF01193.19	gi|146304892|ref|YP_001192208.1|	-	1e-09	37.3	0.0	1.3e-09	37.0	0.0	1.2	1	0	0	1	1	1	1	RNA	polymerase	Rpb3/Rpb11	dimerisation	domain
Fer4_9	PF13187.1	gi|146304892|ref|YP_001192208.1|	-	8e-07	29.2	10.8	1.9e-05	24.8	4.5	2.4	2	0	0	2	2	2	2	4Fe-4S	dicluster	domain
Fer4_7	PF12838.2	gi|146304892|ref|YP_001192208.1|	-	0.00068	19.9	10.6	0.0073	16.6	4.4	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_10	PF13237.1	gi|146304892|ref|YP_001192208.1|	-	0.013	15.3	1.7	0.013	15.3	1.2	3.1	2	2	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4	PF00037.22	gi|146304892|ref|YP_001192208.1|	-	0.037	13.6	4.9	0.037	13.6	3.4	3.7	3	1	1	4	4	4	0	4Fe-4S	binding	domain
Fer4_6	PF12837.2	gi|146304892|ref|YP_001192208.1|	-	0.041	13.7	2.7	0.041	13.7	1.9	3.5	3	1	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_15	PF13459.1	gi|146304892|ref|YP_001192208.1|	-	0.15	12.6	7.9	0.39	11.3	0.5	3.1	3	0	0	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_16	PF13484.1	gi|146304892|ref|YP_001192208.1|	-	1.7	9.4	11.6	14	6.4	2.0	3.3	2	1	1	3	3	3	0	4Fe-4S	double	cluster	binding	domain
Fer4_17	PF13534.1	gi|146304892|ref|YP_001192208.1|	-	3.3	8.1	11.2	14	6.1	2.9	2.8	2	1	2	4	4	4	0	4Fe-4S	dicluster	domain
Fer4_21	PF14697.1	gi|146304892|ref|YP_001192208.1|	-	6.2	6.7	16.2	3.5	7.5	2.8	2.9	2	1	1	3	3	3	0	4Fe-4S	dicluster	domain
Fer4_8	PF13183.1	gi|146304892|ref|YP_001192208.1|	-	8.3	6.5	13.8	1.1e+02	2.9	9.7	2.4	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Ribosomal_S11	PF00411.14	gi|146304893|ref|YP_001192209.1|	-	5.1e-43	145.7	0.1	6e-43	145.5	0.1	1.0	1	0	0	1	1	1	1	Ribosomal	protein	S11
S4	PF01479.20	gi|146304894|ref|YP_001192210.1|	-	5.6e-17	60.9	0.2	1.3e-16	59.7	0.2	1.6	1	0	0	1	1	1	1	S4	domain
Ribosomal_S4	PF00163.14	gi|146304894|ref|YP_001192210.1|	-	0.00038	20.7	0.9	0.0011	19.3	0.1	2.0	1	1	1	2	2	2	1	Ribosomal	protein	S4/S9	N-terminal	domain
Ribosomal_S13	PF00416.17	gi|146304895|ref|YP_001192211.1|	-	3.4e-35	120.7	0.3	4.5e-35	120.3	0.2	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S13/S18
HHH_4	PF14490.1	gi|146304895|ref|YP_001192211.1|	-	0.0053	16.4	0.0	0.0075	16.0	0.0	1.3	1	0	0	1	1	1	1	Helix-hairpin-helix	containing	domain
AIRS_C	PF02769.17	gi|146304896|ref|YP_001192212.1|	-	5.8e-13	49.1	0.1	1e-12	48.3	0.1	1.4	1	0	0	1	1	1	1	AIR	synthase	related	protein,	C-terminal	domain
AIRS	PF00586.19	gi|146304896|ref|YP_001192212.1|	-	5e-11	42.6	0.1	1.2e-10	41.5	0.1	1.6	1	0	0	1	1	1	1	AIR	synthase	related	protein,	N-terminal	domain
UPF0047	PF01894.12	gi|146304897|ref|YP_001192213.1|	-	4.6e-40	136.1	0.0	5.3e-40	135.9	0.0	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	UPF0047
DUF3252	PF11623.3	gi|146304898|ref|YP_001192214.1|	-	0.025	13.9	0.0	0.04	13.3	0.0	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3252)
tRNA-synt_1b	PF00579.20	gi|146304899|ref|YP_001192215.1|	-	3.4e-46	157.7	0.8	1.2e-33	116.4	0.1	2.0	2	0	0	2	2	2	2	tRNA	synthetases	class	I	(W	and	Y)
Toprim_4	PF13662.1	gi|146304900|ref|YP_001192216.1|	-	3.2e-09	36.6	0.1	7.4e-09	35.4	0.1	1.6	1	0	0	1	1	1	1	Toprim	domain
Toprim	PF01751.17	gi|146304900|ref|YP_001192216.1|	-	0.00086	19.2	6.8	0.00091	19.1	0.1	3.3	3	1	0	3	3	3	1	Toprim	domain
Sec3_C_2	PF15278.1	gi|146304900|ref|YP_001192216.1|	-	0.035	14.2	0.2	15	5.7	0.0	3.2	3	0	0	3	3	3	0	Sec3	exocyst	complex	subunit
Toprim_2	PF13155.1	gi|146304900|ref|YP_001192216.1|	-	0.097	13.0	0.0	0.29	11.4	0.0	1.8	1	0	0	1	1	1	0	Toprim-like
DNA_pol_B	PF00136.16	gi|146304901|ref|YP_001192217.1|	-	5.3e-92	309.0	0.2	7.5e-92	308.5	0.1	1.2	1	0	0	1	1	1	1	DNA	polymerase	family	B
DNA_pol_B_exo1	PF03104.14	gi|146304901|ref|YP_001192217.1|	-	3.5e-43	147.7	3.8	8.1e-43	146.5	0.6	2.7	2	1	1	3	3	3	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.1	gi|146304901|ref|YP_001192217.1|	-	2.5e-11	43.6	0.1	6.7e-11	42.2	0.0	1.7	1	0	0	1	1	1	1	RNase_H	superfamily
DNA_pol_B_2	PF03175.8	gi|146304901|ref|YP_001192217.1|	-	0.013	14.1	0.2	0.034	12.8	0.1	1.7	1	1	0	1	1	1	0	DNA	polymerase	type	B,	organellar	and	viral
DUF2392	PF10288.4	gi|146304901|ref|YP_001192217.1|	-	0.11	12.8	0.1	0.43	10.9	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF2392)
Acetyltransf_1	PF00583.19	gi|146304902|ref|YP_001192218.1|	-	1.3e-14	53.9	0.2	2.2e-14	53.2	0.1	1.4	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	family
Acetyltransf_10	PF13673.1	gi|146304902|ref|YP_001192218.1|	-	1.3e-09	38.1	0.0	1.7e-09	37.8	0.0	1.1	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_7	PF13508.1	gi|146304902|ref|YP_001192218.1|	-	2.2e-09	37.3	0.4	3.6e-09	36.6	0.3	1.3	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_4	PF13420.1	gi|146304902|ref|YP_001192218.1|	-	2.7e-07	30.6	0.6	9.5e-07	28.8	0.4	1.8	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_6	PF13480.1	gi|146304902|ref|YP_001192218.1|	-	4.7e-06	26.6	0.0	6.9e-06	26.0	0.0	1.2	1	0	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
FR47	PF08445.5	gi|146304902|ref|YP_001192218.1|	-	5.7e-06	25.9	0.1	7.7e-06	25.5	0.0	1.2	1	0	0	1	1	1	1	FR47-like	protein
Acetyltransf_9	PF13527.1	gi|146304902|ref|YP_001192218.1|	-	0.0064	16.3	0.0	0.018	14.8	0.0	1.7	1	1	0	1	1	1	1	Acetyltransferase	(GNAT)	domain
Acetyltransf_8	PF13523.1	gi|146304902|ref|YP_001192218.1|	-	0.023	14.5	0.0	0.029	14.2	0.0	1.3	1	1	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
DUF3749	PF12568.3	gi|146304902|ref|YP_001192218.1|	-	0.092	12.3	0.0	0.1	12.1	0.0	1.2	1	0	0	1	1	1	0	Acetyltransferase	(GNAT)	domain
eRF1_1	PF03463.10	gi|146304903|ref|YP_001192219.1|	-	9.6e-24	83.4	0.6	1.6e-22	79.4	0.2	2.3	2	0	0	2	2	2	1	eRF1	domain	1
eRF1_3	PF03465.10	gi|146304903|ref|YP_001192219.1|	-	1.3e-20	73.7	0.6	4.4e-20	72.0	0.1	2.1	2	1	0	2	2	2	1	eRF1	domain	3
eRF1_2	PF03464.10	gi|146304903|ref|YP_001192219.1|	-	5.2e-10	39.7	0.0	1.1e-09	38.7	0.0	1.5	1	0	0	1	1	1	1	eRF1	domain	2
DUF4388	PF14332.1	gi|146304903|ref|YP_001192219.1|	-	0.02	14.7	0.0	0.042	13.7	0.0	1.7	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4388)
Radical_SAM	PF04055.16	gi|146304904|ref|YP_001192220.1|	-	1.4e-11	44.8	0.0	3.8e-08	33.6	0.0	3.2	2	2	0	2	2	2	1	Radical	SAM	superfamily
Fer4_14	PF13394.1	gi|146304904|ref|YP_001192220.1|	-	3.5e-08	33.4	0.0	9.1e-08	32.1	0.0	1.7	2	0	0	2	2	2	1	4Fe-4S	single	cluster	domain
Fer4_12	PF13353.1	gi|146304904|ref|YP_001192220.1|	-	1.2e-06	28.6	0.0	5.3e-06	26.6	0.0	2.0	2	1	0	2	2	2	1	4Fe-4S	single	cluster	domain
PmbA_TldD	PF01523.11	gi|146304904|ref|YP_001192220.1|	-	0.021	14.1	0.0	0.039	13.2	0.0	1.5	2	0	0	2	2	2	0	Putative	modulator	of	DNA	gyrase
DUF1122	PF06557.6	gi|146304905|ref|YP_001192221.1|	-	2.5e-69	231.8	0.1	3e-69	231.5	0.0	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1122)
NTP_transf_2	PF01909.18	gi|146304906|ref|YP_001192222.1|	-	2.4e-07	30.9	0.1	8.7e-07	29.1	0.0	2.0	1	1	1	2	2	2	1	Nucleotidyltransferase	domain
Peptidase_M50	PF02163.17	gi|146304907|ref|YP_001192223.1|	-	6.7e-22	77.3	0.7	6.7e-22	77.3	0.5	1.9	2	1	0	2	2	2	1	Peptidase	family	M50
PDZ	PF00595.19	gi|146304907|ref|YP_001192223.1|	-	6.7e-06	26.1	0.0	1.5e-05	25.1	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain	(Also	known	as	DHR	or	GLGF)
PDZ_2	PF13180.1	gi|146304907|ref|YP_001192223.1|	-	0.005	16.6	0.0	0.011	15.6	0.0	1.5	1	0	0	1	1	1	1	PDZ	domain
tRNA-synt_2	PF00152.15	gi|146304908|ref|YP_001192224.1|	-	1.8e-94	316.2	0.2	2.2e-94	315.9	0.1	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(D,	K	and	N)
tRNA_anti-codon	PF01336.20	gi|146304908|ref|YP_001192224.1|	-	9e-10	38.2	0.1	1.7e-09	37.3	0.1	1.5	1	0	0	1	1	1	1	OB-fold	nucleic	acid	binding	domain
tRNA-synt_2d	PF01409.15	gi|146304908|ref|YP_001192224.1|	-	2.4e-08	33.4	0.2	1.9e-05	23.9	0.0	2.8	3	0	0	3	3	3	2	tRNA	synthetases	class	II	core	domain	(F)
tRNA-synt_2b	PF00587.20	gi|146304908|ref|YP_001192224.1|	-	0.0015	18.1	0.3	1.1	8.7	0.0	2.4	2	0	0	2	2	2	2	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
DUF77	PF01910.12	gi|146304908|ref|YP_001192224.1|	-	0.1	12.3	0.0	0.3	10.7	0.0	1.8	2	0	0	2	2	2	0	Domain	of	unknown	function	DUF77
MFS_1	PF07690.11	gi|146304909|ref|YP_001192225.1|	-	1.3e-39	135.8	42.8	1.3e-39	135.8	29.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
PCMT	PF01135.14	gi|146304910|ref|YP_001192226.1|	-	1.6e-37	129.0	0.0	2e-37	128.7	0.0	1.0	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_26	PF13659.1	gi|146304910|ref|YP_001192226.1|	-	9.5e-07	28.8	0.0	1.3e-06	28.4	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146304910|ref|YP_001192226.1|	-	1.3e-05	25.7	0.0	2e-05	25.1	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
RrnaAD	PF00398.15	gi|146304910|ref|YP_001192226.1|	-	1.7e-05	23.9	0.0	2e-05	23.7	0.0	1.2	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_31	PF13847.1	gi|146304910|ref|YP_001192226.1|	-	0.00047	19.7	0.0	0.00062	19.3	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_23	PF13489.1	gi|146304910|ref|YP_001192226.1|	-	0.0014	18.3	0.0	0.0018	18.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.7	gi|146304910|ref|YP_001192226.1|	-	0.0063	16.9	0.0	0.011	16.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Met_10	PF02475.11	gi|146304910|ref|YP_001192226.1|	-	0.016	14.8	0.0	0.023	14.2	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
CMAS	PF02353.15	gi|146304910|ref|YP_001192226.1|	-	0.017	14.2	0.1	0.024	13.7	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
MTS	PF05175.9	gi|146304910|ref|YP_001192226.1|	-	0.021	14.1	0.0	0.031	13.6	0.0	1.2	1	0	0	1	1	1	0	Methyltransferase	small	domain
PrmA	PF06325.8	gi|146304910|ref|YP_001192226.1|	-	0.024	13.7	0.0	0.03	13.4	0.0	1.1	1	0	0	1	1	1	0	Ribosomal	protein	L11	methyltransferase	(PrmA)
Fibrillarin	PF01269.12	gi|146304910|ref|YP_001192226.1|	-	0.059	12.2	0.0	0.084	11.7	0.0	1.2	1	0	0	1	1	1	0	Fibrillarin
Ubie_methyltran	PF01209.13	gi|146304910|ref|YP_001192226.1|	-	0.12	11.4	0.0	0.2	10.7	0.0	1.3	1	0	0	1	1	1	0	ubiE/COQ5	methyltransferase	family
Methyltransf_25	PF13649.1	gi|146304910|ref|YP_001192226.1|	-	0.13	12.6	0.0	0.22	11.8	0.0	1.4	1	0	0	1	1	1	0	Methyltransferase	domain
DUF87	PF01935.12	gi|146304911|ref|YP_001192227.1|	-	4.6e-24	85.5	0.1	1.6e-23	83.7	0.0	1.9	1	1	1	2	2	2	1	Domain	of	unknown	function	DUF87
AAA_10	PF12846.2	gi|146304911|ref|YP_001192227.1|	-	4.9e-17	62.3	1.1	6.2e-17	61.9	0.8	1.1	1	0	0	1	1	1	1	AAA-like	domain
FtsK_SpoIIIE	PF01580.13	gi|146304911|ref|YP_001192227.1|	-	4.1e-07	29.6	1.0	0.00046	19.7	0.0	2.7	2	1	0	2	2	2	2	FtsK/SpoIIIE	family
Zot	PF05707.7	gi|146304911|ref|YP_001192227.1|	-	0.0089	15.5	0.1	0.025	14.0	0.0	1.7	2	0	0	2	2	2	1	Zonular	occludens	toxin	(Zot)
DnaB_C	PF03796.10	gi|146304911|ref|YP_001192227.1|	-	0.032	13.0	0.0	0.055	12.3	0.0	1.3	1	0	0	1	1	1	0	DnaB-like	helicase	C	terminal	domain
T4SS-DNA_transf	PF02534.9	gi|146304911|ref|YP_001192227.1|	-	0.043	12.3	0.1	0.077	11.5	0.1	1.7	1	1	0	1	1	1	0	Type	IV	secretory	system	Conjugative	DNA	transfer
TrwB_AAD_bind	PF10412.4	gi|146304911|ref|YP_001192227.1|	-	0.069	11.7	0.0	0.16	10.5	0.0	1.5	1	0	0	1	1	1	0	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
FLO_LFY	PF01698.11	gi|146304911|ref|YP_001192227.1|	-	0.12	11.1	0.0	0.19	10.5	0.0	1.2	1	0	0	1	1	1	0	Floricaula	/	Leafy	protein
NurA	PF09376.5	gi|146304912|ref|YP_001192228.1|	-	9.5e-15	54.7	0.3	1.3e-08	34.6	0.0	2.6	1	1	1	2	2	2	2	NurA	domain
Aldolase_2	PF10120.4	gi|146304913|ref|YP_001192229.1|	-	7.1e-50	168.6	0.0	9.2e-50	168.3	0.0	1.1	1	0	0	1	1	1	1	Putative	aldolase
Flg_hook	PF02120.11	gi|146304913|ref|YP_001192229.1|	-	0.0047	16.5	0.1	0.0087	15.6	0.0	1.4	1	0	0	1	1	1	1	Flagellar	hook-length	control	protein	FliK
HTH_3	PF01381.17	gi|146304913|ref|YP_001192229.1|	-	0.012	15.3	0.3	0.031	14.1	0.1	1.8	2	0	0	2	2	2	0	Helix-turn-helix
HTH_37	PF13744.1	gi|146304913|ref|YP_001192229.1|	-	0.014	15.2	0.2	0.088	12.6	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
DUF4473	PF14747.1	gi|146304913|ref|YP_001192229.1|	-	0.02	15.0	0.1	2.6	8.3	0.0	2.4	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4473)
HTH_38	PF13936.1	gi|146304913|ref|YP_001192229.1|	-	0.036	13.6	0.1	0.16	11.5	0.0	2.1	2	0	0	2	2	2	0	Helix-turn-helix	domain
YflT	PF11181.3	gi|146304913|ref|YP_001192229.1|	-	0.052	13.7	0.1	0.17	12.0	0.1	1.8	1	1	1	2	2	2	0	Heat	induced	stress	protein	YflT
HTH_7	PF02796.10	gi|146304913|ref|YP_001192229.1|	-	0.1	12.4	0.2	0.32	10.8	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain	of	resolvase
MMPL	PF03176.10	gi|146304914|ref|YP_001192230.1|	-	9.8e-54	182.2	32.7	1.2e-31	109.6	7.1	2.6	2	1	1	3	3	3	2	MMPL	family
Vma12	PF11712.3	gi|146304914|ref|YP_001192230.1|	-	8.4	6.0	8.0	3.1	7.5	3.0	2.1	2	0	0	2	2	2	0	Endoplasmic	reticulum-based	factor	for	assembly	of	V-ATPase
RRN7	PF11781.3	gi|146304915|ref|YP_001192231.1|	-	0.58	9.7	0.1	0.58	9.7	0.1	1.8	2	0	0	2	2	2	0	RNA	polymerase	I-specific	transcription	initiation	factor	Rrn7
Peptidase_M50	PF02163.17	gi|146304916|ref|YP_001192232.1|	-	1.4e-15	56.8	11.2	2.6e-15	55.9	7.8	1.5	1	0	0	1	1	1	1	Peptidase	family	M50
DPM3	PF08285.6	gi|146304916|ref|YP_001192232.1|	-	5.7	6.8	8.8	1.9	8.4	1.1	3.1	2	2	0	2	2	2	0	Dolichol-phosphate	mannosyltransferase	subunit	3	(DPM3)
Rhomboid	PF01694.17	gi|146304917|ref|YP_001192233.1|	-	4.8e-17	62.3	11.6	4.8e-17	62.3	8.1	1.8	2	0	0	2	2	2	1	Rhomboid	family
DUF1206	PF06724.6	gi|146304918|ref|YP_001192234.1|	-	0.064	13.0	0.0	0.11	12.3	0.0	1.3	1	0	0	1	1	1	0	Domain	of	Unknown	Function	(DUF1206)
AAA_18	PF13238.1	gi|146304919|ref|YP_001192235.1|	-	4.7e-18	65.7	0.3	6.9e-18	65.1	0.2	1.3	1	0	0	1	1	1	1	AAA	domain
AAA_17	PF13207.1	gi|146304919|ref|YP_001192235.1|	-	4.2e-15	56.6	0.1	5.7e-15	56.2	0.1	1.4	1	1	0	1	1	1	1	AAA	domain
AAA_33	PF13671.1	gi|146304919|ref|YP_001192235.1|	-	2.8e-05	24.0	0.0	8.7e-05	22.4	0.0	1.9	1	1	0	1	1	1	1	AAA	domain
SKI	PF01202.17	gi|146304919|ref|YP_001192235.1|	-	3.6e-05	23.6	0.1	6.2e-05	22.9	0.1	1.5	1	1	0	1	1	1	1	Shikimate	kinase
NTPase_1	PF03266.10	gi|146304919|ref|YP_001192235.1|	-	0.00011	21.9	0.8	0.00052	19.7	0.5	2.0	1	1	0	1	1	1	1	NTPase
AAA_28	PF13521.1	gi|146304919|ref|YP_001192235.1|	-	0.00014	21.8	0.1	0.0003	20.8	0.0	1.6	1	1	1	2	2	2	1	AAA	domain
RuvB_N	PF05496.7	gi|146304919|ref|YP_001192235.1|	-	0.001	18.1	0.0	0.0014	17.7	0.0	1.2	1	0	0	1	1	1	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_5	PF07728.9	gi|146304919|ref|YP_001192235.1|	-	0.0011	18.6	0.4	0.0085	15.8	0.3	2.1	1	1	1	2	2	2	1	AAA	domain	(dynein-related	subfamily)
Zeta_toxin	PF06414.7	gi|146304919|ref|YP_001192235.1|	-	0.0015	17.6	0.0	0.0051	15.9	0.0	1.9	1	1	0	1	1	1	1	Zeta	toxin
PRK	PF00485.13	gi|146304919|ref|YP_001192235.1|	-	0.0019	17.7	0.0	0.0027	17.2	0.0	1.3	1	0	0	1	1	1	1	Phosphoribulokinase	/	Uridine	kinase	family
AAA_14	PF13173.1	gi|146304919|ref|YP_001192235.1|	-	0.002	18.0	0.2	0.0028	17.5	0.2	1.4	1	1	0	1	1	1	1	AAA	domain
AAA	PF00004.24	gi|146304919|ref|YP_001192235.1|	-	0.0022	18.1	0.0	0.0048	17.0	0.0	1.7	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_22	PF13401.1	gi|146304919|ref|YP_001192235.1|	-	0.0027	17.8	0.7	0.019	15.0	0.4	2.4	1	1	0	2	2	2	1	AAA	domain
KTI12	PF08433.5	gi|146304919|ref|YP_001192235.1|	-	0.0037	16.5	0.1	0.0062	15.7	0.1	1.4	1	1	0	1	1	1	1	Chromatin	associated	protein	KTI12
AAA_16	PF13191.1	gi|146304919|ref|YP_001192235.1|	-	0.004	17.1	0.0	0.0044	17.0	0.0	1.3	1	1	0	1	1	1	1	AAA	ATPase	domain
Cytidylate_kin2	PF13189.1	gi|146304919|ref|YP_001192235.1|	-	0.0092	15.8	0.0	0.015	15.2	0.0	1.4	1	1	0	1	1	1	1	Cytidylate	kinase-like	family
HisG_C	PF08029.6	gi|146304919|ref|YP_001192235.1|	-	0.019	14.8	0.0	0.14	12.0	0.0	2.1	2	0	0	2	2	2	0	HisG,	C-terminal	domain
Rad17	PF03215.10	gi|146304919|ref|YP_001192235.1|	-	0.02	13.5	0.0	0.023	13.3	0.0	1.2	1	0	0	1	1	1	0	Rad17	cell	cycle	checkpoint	protein
Arch_ATPase	PF01637.13	gi|146304919|ref|YP_001192235.1|	-	0.021	14.5	0.4	0.024	14.3	0.3	1.2	1	0	0	1	1	1	0	Archaeal	ATPase
AAA_19	PF13245.1	gi|146304919|ref|YP_001192235.1|	-	0.033	13.9	0.2	0.059	13.1	0.2	1.4	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF2249	PF10006.4	gi|146304919|ref|YP_001192235.1|	-	0.034	13.6	0.0	1.5	8.4	0.0	2.3	2	0	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2249)
AAA_26	PF13500.1	gi|146304919|ref|YP_001192235.1|	-	0.058	13.0	1.1	0.13	11.7	0.8	1.8	1	1	0	1	1	1	0	AAA	domain
DUF2075	PF09848.4	gi|146304919|ref|YP_001192235.1|	-	0.064	12.2	0.0	0.07	12.0	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
Glyco_hydro_17	PF00332.13	gi|146304919|ref|YP_001192235.1|	-	0.088	11.8	0.0	0.77	8.7	0.0	1.9	1	1	1	2	2	2	0	Glycosyl	hydrolases	family	17
AAA_3	PF07726.6	gi|146304919|ref|YP_001192235.1|	-	0.093	12.3	0.1	0.32	10.5	0.0	1.8	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
CbiA	PF01656.18	gi|146304919|ref|YP_001192235.1|	-	0.1	11.9	1.1	0.15	11.4	0.1	1.7	2	1	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
KaiC	PF06745.8	gi|146304919|ref|YP_001192235.1|	-	0.21	10.6	2.2	2.3	7.2	0.4	2.1	1	1	1	2	2	2	0	KaiC
ArsA_ATPase	PF02374.10	gi|146304919|ref|YP_001192235.1|	-	0.32	9.9	2.5	0.63	9.0	1.0	1.9	1	1	1	2	2	2	0	Anion-transporting	ATPase
ParA	PF10609.4	gi|146304920|ref|YP_001192236.1|	-	5.7e-32	109.4	0.5	1.6e-31	108.0	0.0	2.0	2	1	1	3	3	2	1	ParA/MinD	ATPase	like
CbiA	PF01656.18	gi|146304920|ref|YP_001192236.1|	-	6.2e-18	64.9	0.0	8.7e-18	64.4	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
Fer4_NifH	PF00142.13	gi|146304920|ref|YP_001192236.1|	-	4e-08	32.7	0.1	5.6e-05	22.4	0.1	2.2	2	0	0	2	2	2	2	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
AAA_31	PF13614.1	gi|146304920|ref|YP_001192236.1|	-	6.7e-08	32.6	0.0	7.6e-06	25.9	0.0	2.5	3	0	0	3	3	3	1	AAA	domain
MipZ	PF09140.6	gi|146304920|ref|YP_001192236.1|	-	5.5e-07	28.9	0.0	9.2e-07	28.1	0.0	1.4	1	1	0	1	1	1	1	ATPase	MipZ
ArsA_ATPase	PF02374.10	gi|146304920|ref|YP_001192236.1|	-	3.8e-06	26.1	3.4	2e-05	23.8	0.3	2.5	2	1	0	2	2	2	1	Anion-transporting	ATPase
AAA_10	PF12846.2	gi|146304920|ref|YP_001192236.1|	-	0.00041	19.9	0.1	0.00045	19.7	0.1	1.2	1	0	0	1	1	1	1	AAA-like	domain
ArgK	PF03308.11	gi|146304920|ref|YP_001192236.1|	-	0.0013	17.5	0.2	0.0022	16.8	0.1	1.3	1	0	0	1	1	1	1	ArgK	protein
AAA_25	PF13481.1	gi|146304920|ref|YP_001192236.1|	-	0.0027	17.1	0.0	0.0044	16.4	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_26	PF13500.1	gi|146304920|ref|YP_001192236.1|	-	0.0031	17.1	0.2	2.4	7.7	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
IstB_IS21	PF01695.12	gi|146304920|ref|YP_001192236.1|	-	0.064	12.6	0.1	0.14	11.5	0.0	1.5	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
YhjQ	PF06564.7	gi|146304920|ref|YP_001192236.1|	-	0.094	12.0	0.1	0.32	10.3	0.0	1.8	2	0	0	2	2	2	0	YhjQ	protein
DUF258	PF03193.11	gi|146304920|ref|YP_001192236.1|	-	0.15	11.2	0.0	0.21	10.7	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
APC2	PF08672.6	gi|146304921|ref|YP_001192237.1|	-	0.018	15.3	0.0	0.03	14.5	0.0	1.3	1	0	0	1	1	1	0	Anaphase	promoting	complex	(APC)	subunit	2
PadR	PF03551.9	gi|146304921|ref|YP_001192237.1|	-	0.067	12.9	0.0	0.079	12.7	0.0	1.1	1	0	0	1	1	1	0	Transcriptional	regulator	PadR-like	family
TrmB	PF01978.14	gi|146304922|ref|YP_001192238.1|	-	3.1e-12	46.0	0.2	4.1e-12	45.6	0.1	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304922|ref|YP_001192238.1|	-	6.4e-09	35.3	0.0	1.8e-08	33.9	0.0	1.8	2	0	0	2	2	2	1	MarR	family
MarR	PF01047.17	gi|146304922|ref|YP_001192238.1|	-	1.3e-05	24.7	0.0	2.5e-05	23.9	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TFIIE_alpha	PF02002.12	gi|146304922|ref|YP_001192238.1|	-	2.8e-05	23.5	0.0	3.4e-05	23.3	0.0	1.1	1	0	0	1	1	1	1	TFIIE	alpha	subunit
Fe_dep_repress	PF01325.14	gi|146304922|ref|YP_001192238.1|	-	0.00013	21.8	0.1	0.00032	20.5	0.0	1.8	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_24	PF13412.1	gi|146304922|ref|YP_001192238.1|	-	0.00072	18.8	0.1	0.0016	17.7	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Rrf2	PF02082.15	gi|146304922|ref|YP_001192238.1|	-	0.001	19.1	0.1	0.0017	18.3	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_5	PF01022.15	gi|146304922|ref|YP_001192238.1|	-	0.0012	18.4	0.2	0.0024	17.4	0.0	1.6	2	0	0	2	2	1	1	Bacterial	regulatory	protein,	arsR	family
PadR	PF03551.9	gi|146304922|ref|YP_001192238.1|	-	0.0017	18.0	0.0	0.0031	17.2	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_20	PF12840.2	gi|146304922|ref|YP_001192238.1|	-	0.0031	17.2	0.0	0.0058	16.4	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_27	PF13463.1	gi|146304922|ref|YP_001192238.1|	-	0.004	17.4	0.0	0.0069	16.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
Cdc6_C	PF09079.6	gi|146304922|ref|YP_001192238.1|	-	0.0051	16.4	0.5	0.017	14.8	0.0	2.0	2	1	0	2	2	2	1	CDC6,	C	terminal
HTH_34	PF13601.1	gi|146304922|ref|YP_001192238.1|	-	0.019	14.9	0.0	0.031	14.2	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
Sigma70_r4	PF04545.11	gi|146304922|ref|YP_001192238.1|	-	0.02	14.2	0.1	0.1	11.9	0.1	2.0	1	1	0	1	1	1	0	Sigma-70,	region	4
DUF2250	PF10007.4	gi|146304922|ref|YP_001192238.1|	-	0.024	14.5	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_36	PF13730.1	gi|146304922|ref|YP_001192238.1|	-	0.027	14.6	0.1	0.051	13.7	0.1	1.6	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_Crp_2	PF13545.1	gi|146304922|ref|YP_001192238.1|	-	0.038	13.7	0.3	0.072	12.8	0.0	1.6	2	0	0	2	2	1	0	Crp-like	helix-turn-helix	domain
SeqA	PF03925.8	gi|146304922|ref|YP_001192238.1|	-	0.061	13.0	0.0	0.14	11.8	0.0	1.6	1	1	1	2	2	2	0	SeqA	protein
ArsR	PF09824.4	gi|146304922|ref|YP_001192238.1|	-	0.065	12.5	0.0	0.086	12.1	0.0	1.1	1	0	0	1	1	1	0	ArsR	transcriptional	regulator
DUF4423	PF14394.1	gi|146304922|ref|YP_001192238.1|	-	0.066	12.7	0.0	0.09	12.3	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4423)
HTH_CodY	PF08222.6	gi|146304922|ref|YP_001192238.1|	-	0.074	12.4	0.2	0.1	11.9	0.1	1.3	1	0	0	1	1	1	0	CodY	helix-turn-helix	domain
RPA_C	PF08784.6	gi|146304922|ref|YP_001192238.1|	-	0.082	13.3	0.0	0.12	12.8	0.0	1.3	1	0	0	1	1	1	0	Replication	protein	A	C	terminal
HTH_IclR	PF09339.5	gi|146304922|ref|YP_001192238.1|	-	0.097	12.2	0.0	0.21	11.1	0.0	1.6	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
HTH_23	PF13384.1	gi|146304922|ref|YP_001192238.1|	-	0.1	12.3	0.0	0.24	11.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
RP-C	PF03428.8	gi|146304922|ref|YP_001192238.1|	-	0.13	11.7	0.1	0.17	11.3	0.0	1.2	1	0	0	1	1	1	0	Replication	protein	C	N-terminal	domain
LysE	PF01810.13	gi|146304923|ref|YP_001192239.1|	-	1.6e-29	102.5	14.9	2.1e-29	102.1	10.3	1.2	1	0	0	1	1	1	1	LysE	type	translocator
HTH_7	PF02796.10	gi|146304924|ref|YP_001192240.1|	-	5.4e-16	58.1	6.4	4.4e-07	29.6	0.3	3.1	3	0	0	3	3	3	3	Helix-turn-helix	domain	of	resolvase
HTH_23	PF13384.1	gi|146304924|ref|YP_001192240.1|	-	9.9e-16	56.8	0.7	0.00011	21.6	0.0	3.1	3	0	0	3	3	3	3	Homeodomain-like	domain
HTH_38	PF13936.1	gi|146304924|ref|YP_001192240.1|	-	1.9e-15	56.1	4.5	8.3e-05	22.0	0.0	3.1	3	0	0	3	3	3	3	Helix-turn-helix	domain
HTH_28	PF13518.1	gi|146304924|ref|YP_001192240.1|	-	3.3e-13	49.3	1.8	0.00053	19.9	0.1	3.1	3	0	0	3	3	3	3	Helix-turn-helix	domain
HTH_Tnp_ISL3	PF13542.1	gi|146304924|ref|YP_001192240.1|	-	2.8e-08	32.7	0.0	0.0034	16.5	0.0	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
Terminase_5	PF06056.7	gi|146304924|ref|YP_001192240.1|	-	3.4e-08	32.9	1.1	0.13	11.8	0.0	3.1	3	0	0	3	3	3	2	Putative	ATPase	subunit	of	terminase	(gpP-like)
HTH_24	PF13412.1	gi|146304924|ref|YP_001192240.1|	-	3.8e-08	32.5	2.5	0.019	14.3	0.1	3.4	3	1	0	3	3	3	3	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_IS630	PF01710.11	gi|146304924|ref|YP_001192240.1|	-	1.6e-07	31.0	2.6	3.4e-07	29.9	0.7	2.0	2	0	0	2	2	2	1	Transposase
HTH_40	PF14493.1	gi|146304924|ref|YP_001192240.1|	-	3.2e-07	30.4	2.0	0.14	12.3	0.0	3.2	2	1	1	3	3	3	2	Helix-turn-helix	domain
HTH_Tnp_IS1	PF12759.2	gi|146304924|ref|YP_001192240.1|	-	5e-07	29.0	0.0	0.011	15.1	0.0	3.0	3	0	0	3	3	3	2	InsA	C-terminal	domain
Sigma70_r4_2	PF08281.7	gi|146304924|ref|YP_001192240.1|	-	7e-07	28.6	1.2	0.22	11.0	0.1	3.3	3	0	0	3	3	3	2	Sigma-70,	region	4
GerE	PF00196.14	gi|146304924|ref|YP_001192240.1|	-	7.8e-07	28.3	3.6	0.0071	15.6	0.2	3.2	3	0	0	3	3	3	1	Bacterial	regulatory	proteins,	luxR	family
ANT	PF03374.9	gi|146304924|ref|YP_001192240.1|	-	1.3e-06	28.3	0.6	0.00092	19.2	0.0	3.0	1	1	2	3	3	3	1	Phage	antirepressor	protein	KilAC	domain
HTH_Tnp_1	PF01527.15	gi|146304924|ref|YP_001192240.1|	-	6.4e-06	26.0	0.1	0.029	14.2	0.0	2.7	3	0	0	3	3	3	2	Transposase
HTH_29	PF13551.1	gi|146304924|ref|YP_001192240.1|	-	1.3e-05	25.2	0.3	0.34	11.0	0.0	3.1	2	1	1	3	3	3	1	Winged	helix-turn	helix
IF2_N	PF04760.10	gi|146304924|ref|YP_001192240.1|	-	2.4e-05	23.8	4.4	1.9	8.2	0.1	3.9	1	1	2	3	3	3	2	Translation	initiation	factor	IF-2,	N-terminal	region
GcrA	PF07750.6	gi|146304924|ref|YP_001192240.1|	-	8.7e-05	22.7	0.7	0.54	10.4	0.0	2.7	1	1	2	3	3	3	2	GcrA	cell	cycle	regulator
Sigma70_r4	PF04545.11	gi|146304924|ref|YP_001192240.1|	-	0.0001	21.5	1.3	0.0066	15.7	0.1	2.9	3	0	0	3	3	3	1	Sigma-70,	region	4
HTH_11	PF08279.7	gi|146304924|ref|YP_001192240.1|	-	0.00013	21.4	4.6	0.041	13.5	0.1	3.3	3	0	0	3	3	3	1	HTH	domain
Recombinase	PF07508.8	gi|146304924|ref|YP_001192240.1|	-	0.00015	21.8	2.8	0.36	11.0	0.1	3.0	1	1	1	2	2	2	2	Recombinase
EAP30	PF04157.11	gi|146304924|ref|YP_001192240.1|	-	0.00017	20.8	2.4	0.075	12.1	0.5	2.0	2	0	0	2	2	2	2	EAP30/Vps36	family
DUF3791	PF12668.2	gi|146304924|ref|YP_001192240.1|	-	0.00018	21.0	1.4	0.37	10.4	0.0	3.5	3	1	0	3	3	3	1	Protein	of	unknown	function	(DUF3791)
HTH_10	PF04967.7	gi|146304924|ref|YP_001192240.1|	-	0.00024	20.6	1.1	0.35	10.4	0.0	3.1	3	0	0	3	3	3	1	HTH	DNA	binding	domain
HTH_Tnp_Tc3_1	PF11427.3	gi|146304924|ref|YP_001192240.1|	-	0.00039	20.0	1.2	0.24	11.0	0.1	2.5	2	0	0	2	2	2	1	Tc3	transposase
HTH_5	PF01022.15	gi|146304924|ref|YP_001192240.1|	-	0.00046	19.7	0.3	6.2	6.5	0.0	3.4	3	1	0	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
PAX	PF00292.13	gi|146304924|ref|YP_001192240.1|	-	0.00048	19.8	0.0	0.12	12.1	0.0	2.3	1	1	1	2	2	2	1	'Paired	box'	domain
HTH_36	PF13730.1	gi|146304924|ref|YP_001192240.1|	-	0.00078	19.5	5.1	0.22	11.6	0.2	3.1	3	0	0	3	3	3	1	Helix-turn-helix	domain
NUMOD1	PF07453.8	gi|146304924|ref|YP_001192240.1|	-	0.00083	19.1	4.1	0.85	9.5	0.1	3.3	3	0	0	3	3	3	1	NUMOD1	domain
DUF2316	PF10078.4	gi|146304924|ref|YP_001192240.1|	-	0.0012	18.7	0.5	7.9	6.5	0.1	3.2	1	1	2	3	3	3	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
HTH_30	PF13556.1	gi|146304924|ref|YP_001192240.1|	-	0.0014	18.1	0.0	2.6	7.7	0.0	3.2	3	0	0	3	3	3	0	PucR	C-terminal	helix-turn-helix	domain
TrmB	PF01978.14	gi|146304924|ref|YP_001192240.1|	-	0.002	17.8	4.4	0.46	10.2	0.1	3.4	2	1	0	3	3	3	1	Sugar-specific	transcriptional	regulator	TrmB
MarR_2	PF12802.2	gi|146304924|ref|YP_001192240.1|	-	0.0027	17.3	0.0	0.48	10.1	0.0	3.0	2	1	1	3	3	3	1	MarR	family
Rrf2	PF02082.15	gi|146304924|ref|YP_001192240.1|	-	0.0029	17.6	2.8	14	5.8	0.1	3.2	3	0	0	3	3	3	0	Transcriptional	regulator
CPSase_L_D3	PF02787.14	gi|146304924|ref|YP_001192240.1|	-	0.0032	17.2	1.9	0.42	10.3	0.0	2.8	1	1	2	3	3	3	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
FumaraseC_C	PF10415.4	gi|146304924|ref|YP_001192240.1|	-	0.004	17.1	0.7	0.25	11.4	0.0	2.9	2	1	1	3	3	3	1	Fumarase	C	C-terminus
CENP-B_N	PF04218.8	gi|146304924|ref|YP_001192240.1|	-	0.0068	15.7	7.0	0.14	11.6	0.1	3.1	2	1	1	3	3	3	1	CENP-B	N-terminal	DNA-binding	domain
HTH_3	PF01381.17	gi|146304924|ref|YP_001192240.1|	-	0.007	16.1	4.8	1.4	8.7	0.3	3.3	1	1	2	3	3	3	1	Helix-turn-helix
DUF2089	PF09862.4	gi|146304924|ref|YP_001192240.1|	-	0.0077	16.0	1.8	1.5	8.6	0.1	2.3	1	1	1	2	2	2	1	Protein	of	unknown	function	(DUF2089)
HTH_20	PF12840.2	gi|146304924|ref|YP_001192240.1|	-	0.0083	15.9	0.0	9.7	6.0	0.0	3.3	3	1	0	3	3	3	0	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|146304924|ref|YP_001192240.1|	-	0.0091	16.2	0.9	4.4	7.6	0.0	2.8	3	0	0	3	3	2	0	Helix-turn-helix	domain
Phage_terminase	PF10668.4	gi|146304924|ref|YP_001192240.1|	-	0.0094	15.7	1.4	3.1	7.6	0.0	3.0	3	0	0	3	3	3	0	Phage	terminase	small	subunit
DUF1910	PF08928.5	gi|146304924|ref|YP_001192240.1|	-	0.0097	15.9	3.1	0.22	11.5	0.7	2.1	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF1910)
HTH_6	PF01418.12	gi|146304924|ref|YP_001192240.1|	-	0.01	15.5	0.3	5.6	6.7	0.0	3.0	2	1	1	3	3	3	0	Helix-turn-helix	domain,	rpiR	family
B-block_TFIIIC	PF04182.7	gi|146304924|ref|YP_001192240.1|	-	0.011	15.5	1.8	1.6	8.6	0.2	2.4	1	1	1	2	2	2	0	B-block	binding	subunit	of	TFIIIC
DUF2802	PF10975.3	gi|146304924|ref|YP_001192240.1|	-	0.018	14.7	0.0	1.3	8.8	0.0	2.6	2	1	0	2	2	2	0	Protein	of	unknown	function	(DUF2802)
HTH_21	PF13276.1	gi|146304924|ref|YP_001192240.1|	-	0.019	14.9	5.9	0.042	13.8	0.6	3.4	3	2	0	3	3	3	0	HTH-like	domain
Ribosomal_S13_N	PF08069.7	gi|146304924|ref|YP_001192240.1|	-	0.026	14.3	1.3	0.5	10.2	0.0	2.7	3	0	0	3	3	2	0	Ribosomal	S13/S15	N-terminal	domain
HTH_19	PF12844.2	gi|146304924|ref|YP_001192240.1|	-	0.028	14.4	4.9	1.2	9.2	1.8	3.3	1	1	1	2	2	2	0	Helix-turn-helix	domain
Sigma70_r3	PF04539.11	gi|146304924|ref|YP_001192240.1|	-	0.036	13.9	0.3	3.8	7.4	0.0	3.4	2	1	2	4	4	4	0	Sigma-70	region	3
GatB_Yqey	PF02637.13	gi|146304924|ref|YP_001192240.1|	-	0.039	13.6	2.9	0.38	10.4	0.9	2.3	1	1	1	2	2	2	0	GatB	domain
DUF387	PF04079.11	gi|146304924|ref|YP_001192240.1|	-	0.04	13.2	1.2	0.33	10.2	0.2	2.3	1	1	1	2	2	2	0	Putative	transcriptional	regulators	(Ypuh-like)
HTH_37	PF13744.1	gi|146304924|ref|YP_001192240.1|	-	0.051	13.3	4.9	6.9	6.5	0.1	3.1	2	1	1	3	3	3	0	Helix-turn-helix	domain
DUF4116	PF13475.1	gi|146304924|ref|YP_001192240.1|	-	0.054	12.9	0.7	0.24	10.8	0.1	2.2	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4116)
HTH_IclR	PF09339.5	gi|146304924|ref|YP_001192240.1|	-	0.076	12.6	0.0	1.8	8.2	0.0	2.3	2	0	0	2	2	2	0	IclR	helix-turn-helix	domain
Rho_N	PF07498.7	gi|146304924|ref|YP_001192240.1|	-	0.078	12.7	3.3	15	5.4	0.1	3.8	4	1	0	4	4	3	0	Rho	termination	factor,	N-terminal	domain
HTH_AsnC-type	PF13404.1	gi|146304924|ref|YP_001192240.1|	-	0.081	12.4	0.0	0.72	9.4	0.0	2.4	3	0	0	3	3	3	0	AsnC-type	helix-turn-helix	domain
RPA_C	PF08784.6	gi|146304924|ref|YP_001192240.1|	-	0.094	13.1	0.2	35	4.8	0.0	3.0	2	1	1	3	3	3	0	Replication	protein	A	C	terminal
PSD5	PF07637.6	gi|146304924|ref|YP_001192240.1|	-	0.11	12.5	0.0	3.2	7.8	0.0	2.3	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1595)
Slu7	PF11708.3	gi|146304924|ref|YP_001192240.1|	-	0.11	12.2	0.8	0.13	12.0	0.4	1.3	1	1	0	1	1	1	0	Pre-mRNA	splicing	Prp18-interacting	factor
DUF433	PF04255.9	gi|146304924|ref|YP_001192240.1|	-	0.12	11.8	0.0	18	4.8	0.0	3.0	3	0	0	3	3	3	0	Protein	of	unknown	function	(DUF433)
MerR_1	PF13411.1	gi|146304924|ref|YP_001192240.1|	-	0.15	11.8	6.7	22	4.9	0.1	3.9	3	1	1	4	4	4	0	MerR	HTH	family	regulatory	protein
FaeA	PF04703.7	gi|146304924|ref|YP_001192240.1|	-	0.16	12.1	1.6	16	5.7	0.0	2.4	3	0	0	3	3	2	0	FaeA-like	protein
RNA_pol_Rpb1_5	PF04998.12	gi|146304924|ref|YP_001192240.1|	-	0.36	10.0	1.8	0.43	9.8	1.2	1.3	1	1	0	1	1	1	0	RNA	polymerase	Rpb1,	domain	5
Phage_antitermQ	PF06530.7	gi|146304924|ref|YP_001192240.1|	-	0.58	9.7	4.6	12	5.5	0.3	2.9	1	1	2	3	3	3	0	Phage	antitermination	protein	Q
tRNA-synt_1b	PF00579.20	gi|146304925|ref|YP_001192241.1|	-	5.5e-24	84.7	0.0	8e-24	84.2	0.0	1.2	1	0	0	1	1	1	1	tRNA	synthetases	class	I	(W	and	Y)
Snf7	PF03357.16	gi|146304926|ref|YP_001192242.1|	-	0.0015	17.9	0.7	0.0022	17.3	0.5	1.3	1	0	0	1	1	1	1	Snf7
LOH1CR12	PF10158.4	gi|146304926|ref|YP_001192242.1|	-	0.0024	17.6	0.3	0.0042	16.8	0.2	1.5	1	0	0	1	1	1	1	Tumour	suppressor	protein
DivIVA	PF05103.8	gi|146304926|ref|YP_001192242.1|	-	0.029	14.4	1.9	0.39	10.7	0.8	2.2	2	0	0	2	2	2	0	DivIVA	protein
HSP20	PF00011.16	gi|146304927|ref|YP_001192243.1|	-	0.0071	16.1	0.0	0.046	13.5	0.0	1.9	1	1	0	1	1	1	1	Hsp20/alpha	crystallin	family
tRNA-synt_2c	PF01411.14	gi|146304928|ref|YP_001192244.1|	-	6.5e-12	44.5	0.0	8.9e-12	44.0	0.0	1.1	1	0	0	1	1	1	1	tRNA	synthetases	class	II	(A)
tRNA_SAD	PF07973.9	gi|146304928|ref|YP_001192244.1|	-	4.4e-11	42.4	0.2	7.8e-11	41.6	0.2	1.4	1	0	0	1	1	1	1	Threonyl	and	Alanyl	tRNA	synthetase	second	additional	domain
Aminotran_1_2	PF00155.16	gi|146304929|ref|YP_001192245.1|	-	1.1e-13	50.8	0.0	2.6e-12	46.3	0.0	2.5	1	1	0	1	1	1	1	Aminotransferase	class	I	and	II
HTH_10	PF04967.7	gi|146304930|ref|YP_001192246.1|	-	4.5e-18	64.5	0.3	7.7e-18	63.8	0.2	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_24	PF13412.1	gi|146304930|ref|YP_001192246.1|	-	4.5e-05	22.7	1.3	0.00022	20.5	0.2	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.2	gi|146304930|ref|YP_001192246.1|	-	0.0067	16.0	0.0	0.015	14.9	0.0	1.6	1	0	0	1	1	1	1	MarR	family
GntR	PF00392.16	gi|146304930|ref|YP_001192246.1|	-	0.013	14.9	0.2	0.027	13.9	0.1	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
HTH_3	PF01381.17	gi|146304930|ref|YP_001192246.1|	-	0.019	14.8	0.0	0.047	13.5	0.0	1.7	1	0	0	1	1	1	0	Helix-turn-helix
DUF762	PF05555.6	gi|146304930|ref|YP_001192246.1|	-	0.019	14.2	0.9	0.029	13.6	0.6	1.4	1	1	0	1	1	1	0	Coxiella	burnetii	protein	of	unknown	function	(DUF762)
MarR	PF01047.17	gi|146304930|ref|YP_001192246.1|	-	0.023	14.3	0.2	0.08	12.6	0.0	1.9	2	0	0	2	2	2	0	MarR	family
HTH_28	PF13518.1	gi|146304930|ref|YP_001192246.1|	-	0.067	13.2	0.0	0.71	9.9	0.0	2.5	3	0	0	3	3	3	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.14	gi|146304930|ref|YP_001192246.1|	-	0.069	13.0	0.0	0.17	11.8	0.0	1.8	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.1	gi|146304930|ref|YP_001192246.1|	-	0.13	11.8	1.2	0.26	10.8	0.3	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
eIF3_p135	PF12807.2	gi|146304930|ref|YP_001192246.1|	-	0.25	11.2	1.5	1.4	8.8	1.0	2.1	1	1	0	1	1	1	0	Translation	initiation	factor	eIF3	subunit	135
HTH_7	PF02796.10	gi|146304931|ref|YP_001192247.1|	-	3e-05	23.8	0.2	5.3e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_28	PF13518.1	gi|146304931|ref|YP_001192247.1|	-	8.6e-05	22.4	0.2	0.00015	21.7	0.1	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|146304931|ref|YP_001192247.1|	-	9.7e-05	21.8	0.1	0.00019	20.9	0.1	1.5	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_3	PF01381.17	gi|146304931|ref|YP_001192247.1|	-	0.00022	21.0	0.3	0.00037	20.2	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_38	PF13936.1	gi|146304931|ref|YP_001192247.1|	-	0.00049	19.5	0.1	0.00084	18.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_17	PF12728.2	gi|146304931|ref|YP_001192247.1|	-	0.0029	17.8	0.4	0.0062	16.7	0.0	1.8	2	0	0	2	2	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|146304931|ref|YP_001192247.1|	-	0.0075	16.3	0.1	0.014	15.4	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_22	PF13309.1	gi|146304931|ref|YP_001192247.1|	-	0.0098	15.6	1.6	0.22	11.3	1.1	2.5	1	1	0	1	1	1	1	HTH	domain
HTH_8	PF02954.14	gi|146304931|ref|YP_001192247.1|	-	0.014	14.9	2.0	0.015	14.8	0.3	1.9	2	1	0	2	2	2	0	Bacterial	regulatory	protein,	Fis	family
HTH_29	PF13551.1	gi|146304931|ref|YP_001192247.1|	-	0.019	15.1	0.0	0.027	14.6	0.0	1.3	1	0	0	1	1	1	0	Winged	helix-turn	helix
HTH_27	PF13463.1	gi|146304931|ref|YP_001192247.1|	-	0.019	15.2	0.7	0.08	13.2	0.2	2.0	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_31	PF13560.1	gi|146304931|ref|YP_001192247.1|	-	0.02	15.0	0.0	0.033	14.3	0.0	1.5	1	1	0	1	1	1	0	Helix-turn-helix	domain
HTH_psq	PF05225.11	gi|146304931|ref|YP_001192247.1|	-	0.049	13.1	0.0	0.098	12.2	0.0	1.5	1	0	0	1	1	1	0	helix-turn-helix,	Psq	domain
HTH_Tnp_IS630	PF01710.11	gi|146304931|ref|YP_001192247.1|	-	0.092	12.4	0.0	0.12	12.0	0.0	1.4	1	1	0	1	1	1	0	Transposase
MSP7_C	PF12948.2	gi|146304931|ref|YP_001192247.1|	-	0.13	12.5	1.1	0.35	11.1	0.2	2.1	1	1	1	2	2	2	0	MSP7-like	protein	C-terminal	domain
NblA	PF04485.7	gi|146304931|ref|YP_001192247.1|	-	0.21	11.4	0.7	12	5.7	0.1	2.5	2	1	0	2	2	2	0	Phycobilisome	degradation	protein	nblA
OrfB_IS605	PF01385.14	gi|146304932|ref|YP_001192248.1|	-	8.7e-77	257.5	9.9	1.1e-76	257.1	6.9	1.2	1	0	0	1	1	1	1	Probable	transposase
OrfB_Zn_ribbon	PF07282.6	gi|146304932|ref|YP_001192248.1|	-	9.7e-18	63.6	0.0	2.2e-17	62.4	0.0	1.7	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
UPF0081	PF03652.10	gi|146304932|ref|YP_001192248.1|	-	0.00029	20.9	0.2	0.00071	19.7	0.0	1.7	2	0	0	2	2	2	1	Uncharacterised	protein	family	(UPF0081)
Lipase_GDSL_3	PF14606.1	gi|146304932|ref|YP_001192248.1|	-	0.37	10.4	1.9	0.5	10.0	0.0	1.9	2	0	0	2	2	2	0	GDSL-like	Lipase/Acylhydrolase	family
Y1_Tnp	PF01797.11	gi|146304933|ref|YP_001192249.1|	-	2e-41	140.6	0.3	2.3e-41	140.4	0.2	1.0	1	0	0	1	1	1	1	Transposase	IS200	like
HTH_3	PF01381.17	gi|146304933|ref|YP_001192249.1|	-	0.027	14.3	1.8	18	5.2	0.0	3.1	3	0	0	3	3	3	0	Helix-turn-helix
DUF240	PF03086.9	gi|146304934|ref|YP_001192250.1|	-	0.059	13.0	0.1	0.11	12.1	0.1	1.4	1	0	0	1	1	1	0	MG032/MG096/MG288	family	2
IncA	PF04156.9	gi|146304935|ref|YP_001192251.1|	-	0.062	12.8	0.1	0.084	12.4	0.1	1.1	1	0	0	1	1	1	0	IncA	protein
NfeD	PF01957.13	gi|146304935|ref|YP_001192251.1|	-	0.085	12.9	2.6	0.11	12.6	1.4	1.5	1	1	0	1	1	1	0	NfeD-like	C-terminal,	partner-binding
Y_Y_Y	PF07495.8	gi|146304936|ref|YP_001192252.1|	-	0.0055	16.4	0.3	0.013	15.2	0.2	1.5	1	0	0	1	1	1	1	Y_Y_Y	domain
PKD	PF00801.15	gi|146304936|ref|YP_001192252.1|	-	0.055	13.2	3.2	0.11	12.2	2.2	1.5	1	0	0	1	1	1	0	PKD	domain
Filamin	PF00630.14	gi|146304936|ref|YP_001192252.1|	-	0.2	12.2	0.1	1.5	9.4	0.1	2.1	1	1	0	1	1	1	0	Filamin/ABP280	repeat
Caveolin	PF01146.12	gi|146304936|ref|YP_001192252.1|	-	2.3	7.8	9.7	0.65	9.5	4.3	1.8	1	1	1	2	2	2	0	Caveolin
AAA_10	PF12846.2	gi|146304937|ref|YP_001192253.1|	-	7.6e-24	84.6	2.0	8.4e-16	58.2	0.8	2.4	1	1	1	2	2	2	2	AAA-like	domain
DUF87	PF01935.12	gi|146304937|ref|YP_001192253.1|	-	3e-09	37.0	1.1	1.4e-07	31.5	0.0	2.7	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
TrwB_AAD_bind	PF10412.4	gi|146304937|ref|YP_001192253.1|	-	1.4e-06	27.1	1.1	2.4e-05	23.1	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
ResIII	PF04851.10	gi|146304937|ref|YP_001192253.1|	-	3.5e-06	26.9	1.1	0.0039	17.0	0.0	3.7	3	1	0	3	3	3	1	Type	III	restriction	enzyme,	res	subunit
ArgK	PF03308.11	gi|146304937|ref|YP_001192253.1|	-	0.0004	19.2	0.0	0.00082	18.2	0.0	1.4	1	0	0	1	1	1	1	ArgK	protein
AAA_17	PF13207.1	gi|146304937|ref|YP_001192253.1|	-	0.0006	20.6	0.8	0.013	16.2	0.1	3.0	1	1	0	2	2	2	1	AAA	domain
FtsK_SpoIIIE	PF01580.13	gi|146304937|ref|YP_001192253.1|	-	0.00061	19.3	0.0	0.0014	18.1	0.0	1.5	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
AAA_22	PF13401.1	gi|146304937|ref|YP_001192253.1|	-	0.00083	19.4	2.3	0.38	10.8	0.6	3.0	2	1	0	2	2	2	1	AAA	domain
ABC_tran	PF00005.22	gi|146304937|ref|YP_001192253.1|	-	0.0024	18.1	0.1	0.0089	16.3	0.0	2.1	2	0	0	2	2	1	1	ABC	transporter
AAA_18	PF13238.1	gi|146304937|ref|YP_001192253.1|	-	0.0027	18.0	1.8	0.029	14.6	0.1	3.3	4	1	0	4	4	3	1	AAA	domain
DUF2075	PF09848.4	gi|146304937|ref|YP_001192253.1|	-	0.0092	14.9	0.1	1.5	7.6	0.1	2.2	2	0	0	2	2	2	1	Uncharacterized	conserved	protein	(DUF2075)
T2SE	PF00437.15	gi|146304937|ref|YP_001192253.1|	-	0.0094	14.8	0.0	0.027	13.3	0.0	1.7	1	0	0	1	1	1	1	Type	II/IV	secretion	system	protein
CbiA	PF01656.18	gi|146304937|ref|YP_001192253.1|	-	0.01	15.2	0.0	0.024	14.0	0.0	1.7	1	0	0	1	1	1	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_14	PF13173.1	gi|146304937|ref|YP_001192253.1|	-	0.016	15.0	0.0	6.8	6.6	0.0	2.8	2	1	0	2	2	2	0	AAA	domain
SRP54	PF00448.17	gi|146304937|ref|YP_001192253.1|	-	0.02	14.3	0.0	0.064	12.6	0.0	1.8	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
AAA_28	PF13521.1	gi|146304937|ref|YP_001192253.1|	-	0.051	13.5	0.0	0.26	11.2	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
ATP_bind_1	PF03029.12	gi|146304937|ref|YP_001192253.1|	-	0.063	12.7	0.0	0.58	9.6	0.0	2.4	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_19	PF13245.1	gi|146304937|ref|YP_001192253.1|	-	0.069	12.9	0.5	0.17	11.6	0.3	1.6	1	0	0	1	1	1	0	Part	of	AAA	domain
DUF1198	PF06711.6	gi|146304939|ref|YP_001192255.1|	-	0.015	15.1	1.6	0.15	11.8	0.2	2.2	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF1198)
Herpes_UL92	PF03048.9	gi|146304939|ref|YP_001192255.1|	-	0.14	11.7	1.4	0.13	11.8	0.1	1.7	2	0	0	2	2	2	0	UL92	family
TrmB	PF01978.14	gi|146304942|ref|YP_001192258.1|	-	5.9e-07	29.1	0.3	7e-07	28.8	0.2	1.1	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Rrf2	PF02082.15	gi|146304942|ref|YP_001192258.1|	-	0.001	19.1	0.1	0.0019	18.2	0.0	1.4	1	1	1	2	2	2	1	Transcriptional	regulator
HTH_9	PF08221.6	gi|146304942|ref|YP_001192258.1|	-	0.0018	18.1	0.1	0.0029	17.4	0.0	1.4	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|146304942|ref|YP_001192258.1|	-	0.0079	15.7	0.0	0.014	14.9	0.0	1.5	1	1	1	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
DUF2250	PF10007.4	gi|146304942|ref|YP_001192258.1|	-	0.02	14.7	0.2	0.023	14.5	0.1	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_20	PF12840.2	gi|146304942|ref|YP_001192258.1|	-	0.026	14.3	0.1	0.046	13.5	0.0	1.5	2	0	0	2	2	2	0	Helix-turn-helix	domain
HTH_5	PF01022.15	gi|146304942|ref|YP_001192258.1|	-	0.033	13.8	0.0	0.044	13.4	0.0	1.2	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
DUF4373	PF14297.1	gi|146304942|ref|YP_001192258.1|	-	0.042	14.1	0.0	0.055	13.7	0.0	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4373)
DUF1286	PF06939.6	gi|146304944|ref|YP_001192260.1|	-	5e-43	145.8	5.0	5e-43	145.8	3.4	1.4	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF1286)
DUF457	PF04307.9	gi|146304944|ref|YP_001192260.1|	-	0.00068	18.9	16.0	0.01	15.2	11.1	2.0	1	1	0	1	1	1	1	Predicted	membrane-bound	metal-dependent	hydrolase	(DUF457)
DUF4381	PF14316.1	gi|146304944|ref|YP_001192260.1|	-	0.32	11.0	2.1	20	5.2	0.0	2.3	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4381)
DUF87	PF01935.12	gi|146304945|ref|YP_001192261.1|	-	1.4e-05	25.0	0.3	3e-05	23.9	0.1	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
AAA_22	PF13401.1	gi|146304945|ref|YP_001192261.1|	-	2.4e-05	24.5	0.2	4e-05	23.7	0.1	1.6	1	1	0	1	1	1	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|146304945|ref|YP_001192261.1|	-	2.7e-05	22.9	0.1	0.00039	19.1	0.1	2.0	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_24	PF13479.1	gi|146304945|ref|YP_001192261.1|	-	0.0061	16.1	0.1	0.013	15.1	0.0	1.6	1	1	0	1	1	1	1	AAA	domain
ABC_tran	PF00005.22	gi|146304945|ref|YP_001192261.1|	-	0.0063	16.8	0.0	0.012	15.9	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
AAA_10	PF12846.2	gi|146304945|ref|YP_001192261.1|	-	0.0066	15.9	0.0	0.64	9.4	0.0	2.3	2	0	0	2	2	2	1	AAA-like	domain
DUF853	PF05872.7	gi|146304945|ref|YP_001192261.1|	-	0.011	14.1	0.0	0.017	13.4	0.0	1.3	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF853)
T2SE	PF00437.15	gi|146304945|ref|YP_001192261.1|	-	0.013	14.3	0.1	0.02	13.8	0.0	1.3	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
FtsK_SpoIIIE	PF01580.13	gi|146304945|ref|YP_001192261.1|	-	0.015	14.8	0.0	0.028	13.9	0.0	1.4	1	0	0	1	1	1	0	FtsK/SpoIIIE	family
NB-ARC	PF00931.17	gi|146304945|ref|YP_001192261.1|	-	0.015	14.1	3.4	0.12	11.1	2.4	2.1	1	1	0	1	1	1	0	NB-ARC	domain
AAA	PF00004.24	gi|146304945|ref|YP_001192261.1|	-	0.023	14.8	0.1	0.046	13.9	0.0	1.6	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
NACHT	PF05729.7	gi|146304945|ref|YP_001192261.1|	-	0.032	13.9	0.5	0.076	12.6	0.2	1.8	2	0	0	2	2	2	0	NACHT	domain
DAP3	PF10236.4	gi|146304945|ref|YP_001192261.1|	-	0.033	13.1	0.0	0.058	12.3	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosomal	death-associated	protein	3
Zeta_toxin	PF06414.7	gi|146304945|ref|YP_001192261.1|	-	0.054	12.5	0.0	0.14	11.2	0.0	1.8	1	0	0	1	1	1	0	Zeta	toxin
AAA_16	PF13191.1	gi|146304945|ref|YP_001192261.1|	-	0.064	13.2	0.0	0.1	12.5	0.0	1.3	1	0	0	1	1	1	0	AAA	ATPase	domain
Sigma54_activat	PF00158.21	gi|146304945|ref|YP_001192261.1|	-	0.072	12.5	0.0	0.13	11.6	0.0	1.4	1	0	0	1	1	1	0	Sigma-54	interaction	domain
AAA_18	PF13238.1	gi|146304945|ref|YP_001192261.1|	-	0.076	13.3	2.1	0.17	12.1	1.2	2.0	1	1	0	1	1	1	0	AAA	domain
DUF258	PF03193.11	gi|146304945|ref|YP_001192261.1|	-	0.11	11.6	0.2	0.32	10.1	0.1	1.7	1	1	0	1	1	1	0	Protein	of	unknown	function,	DUF258
RNA_pol_Rpb5_C	PF01191.14	gi|146304946|ref|YP_001192262.1|	-	0.0069	15.9	0.0	0.026	14.1	0.0	1.8	2	0	0	2	2	2	1	RNA	polymerase	Rpb5,	C-terminal	domain
Sulfolobus_pRN	PF05584.6	gi|146304947|ref|YP_001192263.1|	-	1.9e-27	95.0	1.4	2.2e-27	94.7	1.0	1.1	1	0	0	1	1	1	1	Sulfolobus	plasmid	regulatory	protein
Rrf2	PF02082.15	gi|146304947|ref|YP_001192263.1|	-	0.00079	19.4	0.0	0.00093	19.2	0.0	1.1	1	0	0	1	1	1	1	Transcriptional	regulator
Cdc6_C	PF09079.6	gi|146304947|ref|YP_001192263.1|	-	0.00099	18.7	0.1	0.0014	18.3	0.1	1.3	1	0	0	1	1	1	1	CDC6,	C	terminal
MarR_2	PF12802.2	gi|146304947|ref|YP_001192263.1|	-	0.013	15.1	0.0	0.016	14.8	0.0	1.2	1	0	0	1	1	1	0	MarR	family
MarR	PF01047.17	gi|146304947|ref|YP_001192263.1|	-	0.066	12.9	0.0	0.088	12.5	0.0	1.2	1	0	0	1	1	1	0	MarR	family
ArsR	PF09824.4	gi|146304947|ref|YP_001192263.1|	-	0.11	11.8	0.1	0.16	11.3	0.1	1.3	1	1	0	1	1	1	0	ArsR	transcriptional	regulator
PadR	PF03551.9	gi|146304947|ref|YP_001192263.1|	-	0.12	12.2	0.6	0.2	11.4	0.1	1.6	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
DUF4145	PF13643.1	gi|146304948|ref|YP_001192264.1|	-	8e-17	60.8	0.3	1.7e-16	59.7	0.1	1.6	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4145)
SBP_bac_5	PF00496.17	gi|146304949|ref|YP_001192265.1|	-	5.1e-54	183.5	9.5	5.1e-54	183.5	6.6	2.1	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
PKD	PF00801.15	gi|146304949|ref|YP_001192265.1|	-	8.2e-07	28.6	14.8	0.00092	18.9	1.1	4.0	3	1	0	3	3	3	2	PKD	domain
BPD_transp_1	PF00528.17	gi|146304950|ref|YP_001192266.1|	-	6.2e-37	126.8	15.2	6.2e-37	126.8	10.6	2.4	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.17	gi|146304951|ref|YP_001192267.1|	-	4e-31	107.9	14.6	4e-31	107.9	10.1	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.2	gi|146304951|ref|YP_001192267.1|	-	0.0052	16.1	1.7	0.011	15.1	0.1	2.4	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.22	gi|146304952|ref|YP_001192268.1|	-	1.2e-22	80.6	0.0	3.7e-21	75.8	0.0	2.5	1	1	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146304952|ref|YP_001192268.1|	-	2.3e-21	75.9	0.2	4.5e-21	74.9	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146304952|ref|YP_001192268.1|	-	4.3e-15	56.4	1.3	8.3e-14	52.2	0.9	2.1	1	1	0	1	1	1	1	AAA	domain
SMC_N	PF02463.14	gi|146304952|ref|YP_001192268.1|	-	2.8e-07	30.0	0.4	5.4e-05	22.5	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|146304952|ref|YP_001192268.1|	-	0.00018	20.6	1.0	0.0011	18.0	0.2	2.3	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_10	PF12846.2	gi|146304952|ref|YP_001192268.1|	-	0.0015	18.0	2.0	0.28	10.5	1.4	2.7	1	1	0	1	1	1	1	AAA-like	domain
AAA_33	PF13671.1	gi|146304952|ref|YP_001192268.1|	-	0.0021	17.9	0.0	0.0053	16.6	0.0	1.8	1	1	0	1	1	1	1	AAA	domain
AAA_29	PF13555.1	gi|146304952|ref|YP_001192268.1|	-	0.0025	17.3	0.1	0.0046	16.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.1	gi|146304952|ref|YP_001192268.1|	-	0.011	15.1	1.5	0.017	14.5	0.0	2.0	3	0	0	3	3	3	0	AAA	domain
AAA_22	PF13401.1	gi|146304952|ref|YP_001192268.1|	-	0.071	13.2	1.3	4	7.5	0.0	2.7	3	0	0	3	3	3	0	AAA	domain
DUF2075	PF09848.4	gi|146304952|ref|YP_001192268.1|	-	0.073	12.0	0.0	0.13	11.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
AAA_18	PF13238.1	gi|146304952|ref|YP_001192268.1|	-	0.09	13.0	0.8	0.25	11.6	0.4	1.9	1	1	0	1	1	1	0	AAA	domain
ABC_ATPase	PF09818.4	gi|146304952|ref|YP_001192268.1|	-	0.17	10.4	3.2	1.1	7.8	0.0	3.1	3	1	0	3	3	3	0	Predicted	ATPase	of	the	ABC	class
AAA_23	PF13476.1	gi|146304952|ref|YP_001192268.1|	-	0.79	10.0	4.1	5.1	7.3	2.9	2.0	1	1	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.22	gi|146304953|ref|YP_001192269.1|	-	1.7e-33	115.8	0.0	3.5e-33	114.8	0.0	1.6	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.7	gi|146304953|ref|YP_001192269.1|	-	5.9e-20	71.3	0.2	1.2e-19	70.4	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.1	gi|146304953|ref|YP_001192269.1|	-	6.7e-15	55.8	1.8	5.1e-13	49.6	0.1	2.8	2	1	0	2	2	2	1	AAA	domain
SMC_N	PF02463.14	gi|146304953|ref|YP_001192269.1|	-	2.2e-07	30.3	0.3	3.3e-05	23.2	0.0	2.3	2	0	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.1	gi|146304953|ref|YP_001192269.1|	-	5.6e-07	29.7	0.1	0.027	14.6	0.0	2.4	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|146304953|ref|YP_001192269.1|	-	1.9e-05	24.1	0.0	0.099	12.0	0.0	2.2	2	0	0	2	2	2	2	AAA	domain
AAA_10	PF12846.2	gi|146304953|ref|YP_001192269.1|	-	0.00015	21.3	1.4	0.22	10.8	0.0	2.5	1	1	1	2	2	2	2	AAA-like	domain
AAA_15	PF13175.1	gi|146304953|ref|YP_001192269.1|	-	0.00022	20.3	2.7	0.0037	16.3	0.0	2.7	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_18	PF13238.1	gi|146304953|ref|YP_001192269.1|	-	0.00024	21.3	1.0	0.0029	17.9	0.1	2.9	3	1	1	4	4	4	1	AAA	domain
AAA_16	PF13191.1	gi|146304953|ref|YP_001192269.1|	-	0.00049	20.1	0.1	0.00091	19.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
DUF87	PF01935.12	gi|146304953|ref|YP_001192269.1|	-	0.00068	19.5	0.1	0.0026	17.6	0.0	2.0	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
AAA_29	PF13555.1	gi|146304953|ref|YP_001192269.1|	-	0.0013	18.1	0.0	0.0026	17.2	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
MobB	PF03205.9	gi|146304953|ref|YP_001192269.1|	-	0.0014	18.3	0.3	0.061	13.0	0.0	2.3	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
DUF3987	PF13148.1	gi|146304953|ref|YP_001192269.1|	-	0.0055	15.3	0.0	0.0092	14.5	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3987)
AAA_13	PF13166.1	gi|146304953|ref|YP_001192269.1|	-	0.018	13.5	1.8	0.29	9.5	0.0	2.6	3	1	0	3	3	3	0	AAA	domain
AAA_17	PF13207.1	gi|146304953|ref|YP_001192269.1|	-	0.021	15.6	0.1	0.085	13.6	0.0	2.1	2	0	0	2	2	2	0	AAA	domain
SbcCD_C	PF13558.1	gi|146304953|ref|YP_001192269.1|	-	0.029	14.3	0.1	0.12	12.3	0.1	2.0	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
AAA_5	PF07728.9	gi|146304953|ref|YP_001192269.1|	-	0.029	14.0	0.1	0.96	9.1	0.0	2.4	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
PRK	PF00485.13	gi|146304953|ref|YP_001192269.1|	-	0.042	13.3	0.0	0.12	11.8	0.0	1.8	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
DUF258	PF03193.11	gi|146304953|ref|YP_001192269.1|	-	0.085	12.0	0.0	0.15	11.2	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function,	DUF258
ABC_ATPase	PF09818.4	gi|146304953|ref|YP_001192269.1|	-	0.31	9.5	1.7	2.4	6.6	0.1	2.7	2	1	0	2	2	2	0	Predicted	ATPase	of	the	ABC	class
GTP_EFTU_D2	PF03144.20	gi|146304954|ref|YP_001192270.1|	-	0.0023	18.0	2.3	0.0082	16.2	0.2	2.9	3	1	1	4	4	4	1	Elongation	factor	Tu	domain	2
TFIIB	PF00382.14	gi|146304955|ref|YP_001192271.1|	-	2.1e-35	120.3	4.0	2e-17	62.7	0.2	2.2	2	0	0	2	2	2	2	Transcription	factor	TFIIB	repeat
TF_Zn_Ribbon	PF08271.7	gi|146304955|ref|YP_001192271.1|	-	8.9e-15	53.7	0.2	1.7e-14	52.8	0.2	1.5	1	0	0	1	1	1	1	TFIIB	zinc-binding
Sigma70_r4	PF04545.11	gi|146304955|ref|YP_001192271.1|	-	2.9e-06	26.4	1.6	0.00017	20.8	0.3	3.4	3	1	0	3	3	3	1	Sigma-70,	region	4
HTH_AsnC-type	PF13404.1	gi|146304955|ref|YP_001192271.1|	-	1.1e-05	24.9	0.3	0.00036	20.0	0.1	2.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
Cyclin_C	PF02984.14	gi|146304955|ref|YP_001192271.1|	-	0.00013	21.8	0.1	0.066	13.1	0.0	2.3	2	0	0	2	2	2	2	Cyclin,	C-terminal	domain
Sigma70_r4_2	PF08281.7	gi|146304955|ref|YP_001192271.1|	-	0.00033	20.0	0.2	0.0048	16.3	0.0	2.7	2	0	0	2	2	2	1	Sigma-70,	region	4
HTH_24	PF13412.1	gi|146304955|ref|YP_001192271.1|	-	0.00055	19.2	1.2	0.0017	17.7	0.1	2.4	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_Tnp_ISL3	PF13542.1	gi|146304955|ref|YP_001192271.1|	-	0.0026	16.9	0.3	0.19	10.9	0.1	2.8	3	0	0	3	3	3	1	Helix-turn-helix	domain	of	transposase	family	ISL3
DUF3562	PF12085.3	gi|146304955|ref|YP_001192271.1|	-	0.0033	17.2	0.6	0.39	10.5	0.0	2.5	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF3562)
HTH_11	PF08279.7	gi|146304955|ref|YP_001192271.1|	-	0.0034	17.0	0.5	0.01	15.4	0.4	1.8	1	0	0	1	1	1	1	HTH	domain
HTH_37	PF13744.1	gi|146304955|ref|YP_001192271.1|	-	0.016	15.0	0.3	0.21	11.4	0.2	2.7	3	0	0	3	3	3	0	Helix-turn-helix	domain
Cyclin_N	PF00134.18	gi|146304955|ref|YP_001192271.1|	-	0.024	14.1	0.2	4	7.0	0.0	2.3	2	0	0	2	2	2	0	Cyclin,	N-terminal	domain
HTH_23	PF13384.1	gi|146304955|ref|YP_001192271.1|	-	0.031	13.9	0.1	0.031	13.9	0.1	3.2	3	0	0	3	3	3	0	Homeodomain-like	domain
BatA	PF07584.6	gi|146304955|ref|YP_001192271.1|	-	0.1	12.8	0.0	0.21	11.8	0.0	1.5	1	0	0	1	1	1	0	Aerotolerance	regulator	N-terminal
HTH_Crp_2	PF13545.1	gi|146304955|ref|YP_001192271.1|	-	0.19	11.5	5.5	0.5	10.1	0.1	3.3	4	0	0	4	4	4	0	Crp-like	helix-turn-helix	domain
SUI1	PF01253.17	gi|146304956|ref|YP_001192272.1|	-	4.4e-25	87.2	0.5	5.1e-25	87.0	0.4	1.1	1	0	0	1	1	1	1	Translation	initiation	factor	SUI1
DNA_RNApol_7kD	PF03604.8	gi|146304957|ref|YP_001192273.1|	-	0.00074	18.9	4.5	0.0029	17.0	3.2	1.8	1	1	0	1	1	1	1	DNA	directed	RNA	polymerase,	7	kDa	subunit
DUF2072	PF09845.4	gi|146304957|ref|YP_001192273.1|	-	0.0019	18.1	0.2	0.002	18.0	0.2	1.0	1	0	0	1	1	1	1	Zn-ribbon	containing	protein	(DUF2072)
Zn_Tnp_IS1595	PF12760.2	gi|146304957|ref|YP_001192273.1|	-	0.0027	17.4	1.1	0.047	13.4	0.0	2.0	2	0	0	2	2	2	1	Transposase	zinc-ribbon	domain
zf-C2H2	PF00096.21	gi|146304957|ref|YP_001192273.1|	-	0.0077	16.5	3.5	0.36	11.2	0.3	2.1	2	0	0	2	2	2	1	Zinc	finger,	C2H2	type
OrfB_Zn_ribbon	PF07282.6	gi|146304957|ref|YP_001192273.1|	-	0.018	14.6	0.3	1.2	8.8	0.1	2.1	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
Zn_ribbon_recom	PF13408.1	gi|146304957|ref|YP_001192273.1|	-	0.053	13.7	1.2	1.6	9.0	0.1	2.1	2	0	0	2	2	2	0	Recombinase	zinc	beta	ribbon	domain
zf-ribbon_3	PF13248.1	gi|146304957|ref|YP_001192273.1|	-	0.074	12.2	0.3	0.074	12.2	0.2	1.9	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-ISL3	PF14690.1	gi|146304957|ref|YP_001192273.1|	-	0.09	12.8	1.3	0.24	11.4	0.1	1.9	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
zf-C3HC4_2	PF13923.1	gi|146304957|ref|YP_001192273.1|	-	0.1	12.6	0.6	0.14	12.2	0.4	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
zinc_ribbon_2	PF13240.1	gi|146304957|ref|YP_001192273.1|	-	0.11	12.0	0.1	0.11	12.0	0.0	2.0	2	0	0	2	2	2	0	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146304957|ref|YP_001192273.1|	-	0.11	12.1	4.4	2.6	7.7	0.0	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
HypA	PF01155.14	gi|146304957|ref|YP_001192273.1|	-	0.12	12.0	0.0	0.12	12.0	0.0	1.1	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
zf-BED	PF02892.10	gi|146304957|ref|YP_001192273.1|	-	0.14	11.9	3.6	0.35	10.6	0.8	2.0	1	1	1	2	2	2	0	BED	zinc	finger
zf-H2C2_2	PF13465.1	gi|146304957|ref|YP_001192273.1|	-	0.2	11.9	2.8	3.8	7.9	0.1	2.1	2	0	0	2	2	2	0	Zinc-finger	double	domain
Cys_rich_CPXG	PF14255.1	gi|146304957|ref|YP_001192273.1|	-	0.22	11.3	1.1	0.35	10.7	0.2	1.7	2	0	0	2	2	2	0	Cysteine-rich	CPXCG
zinc_ribbon_4	PF13717.1	gi|146304957|ref|YP_001192273.1|	-	0.28	10.9	4.9	18	5.1	1.1	2.3	1	1	1	2	2	2	0	zinc-ribbon	domain
zf-C2H2_4	PF13894.1	gi|146304957|ref|YP_001192273.1|	-	0.29	11.5	1.4	4.8	7.7	0.1	2.1	2	0	0	2	2	2	0	C2H2-type	zinc	finger
Zn-ribbon_8	PF09723.5	gi|146304957|ref|YP_001192273.1|	-	0.29	11.1	2.3	1.2	9.1	1.7	1.9	1	1	0	1	1	1	0	Zinc	ribbon	domain
zf-RING_5	PF14634.1	gi|146304957|ref|YP_001192273.1|	-	0.4	10.4	2.4	1.5	8.6	0.0	2.0	1	1	1	2	2	2	0	zinc-RING	finger	domain
Mu-like_Com	PF10122.4	gi|146304957|ref|YP_001192273.1|	-	0.53	9.3	3.3	1.4	7.9	2.3	1.7	1	1	0	1	1	1	0	Mu-like	prophage	protein	Com
zf-C2HC_2	PF13913.1	gi|146304957|ref|YP_001192273.1|	-	1.4	8.6	4.5	7.2	6.3	0.7	2.1	2	0	0	2	2	2	0	zinc-finger	of	a	C2HC-type
UPF0547	PF10571.4	gi|146304957|ref|YP_001192273.1|	-	4	7.2	5.5	0.72	9.5	0.6	1.9	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Arginase	PF00491.16	gi|146304958|ref|YP_001192274.1|	-	7.1e-69	232.1	0.1	8e-69	232.0	0.0	1.0	1	0	0	1	1	1	1	Arginase	family
tRNA-synt_2b	PF00587.20	gi|146304959|ref|YP_001192275.1|	-	7.3e-52	175.4	0.1	1.4e-51	174.5	0.0	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
HGTP_anticodon	PF03129.15	gi|146304959|ref|YP_001192275.1|	-	3.7e-19	68.4	0.0	7.3e-19	67.5	0.0	1.5	1	0	0	1	1	1	1	Anticodon	binding	domain
Molydop_binding	PF01568.16	gi|146304960|ref|YP_001192276.1|	-	0.00015	21.5	0.1	0.12	12.2	0.0	2.1	1	1	1	2	2	2	2	Molydopterin	dinucleotide	binding	domain
PGBA_N	PF15436.1	gi|146304960|ref|YP_001192276.1|	-	0.13	11.5	0.0	0.14	11.3	0.0	1.1	1	0	0	1	1	1	0	Plasminogen-binding	protein	pgbA	N-terminal
DUF848	PF05852.6	gi|146304961|ref|YP_001192277.1|	-	0.017	14.9	0.2	0.017	14.9	0.2	1.6	2	0	0	2	2	2	0	Gammaherpesvirus	protein	of	unknown	function	(DUF848)
Toxin_R_bind_C	PF07951.7	gi|146304961|ref|YP_001192277.1|	-	0.054	13.1	0.2	0.056	13.1	0.2	1.2	1	0	0	1	1	1	0	Clostridium	neurotoxin,	C-terminal	receptor	binding
DUF4375	PF14300.1	gi|146304961|ref|YP_001192277.1|	-	0.063	13.2	0.1	0.26	11.2	0.0	2.0	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4375)
EntA_Immun	PF08951.5	gi|146304961|ref|YP_001192277.1|	-	0.094	12.8	1.9	2.4	8.3	0.1	2.4	2	0	0	2	2	2	0	Enterocin	A	Immunity
Desmo_N	PF06771.6	gi|146304961|ref|YP_001192277.1|	-	0.15	12.0	0.8	13	5.7	0.1	2.3	1	1	1	2	2	2	0	Viral	Desmoplakin	N-terminus
Med22	PF06179.7	gi|146304961|ref|YP_001192277.1|	-	0.84	9.6	4.1	7.2	6.6	0.2	2.9	2	1	1	3	3	3	0	Surfeit	locus	protein	5	subunit	22	of	Mediator	complex
PhoU_div	PF01865.11	gi|146304962|ref|YP_001192278.1|	-	0.00012	21.3	14.2	0.0011	18.1	3.9	2.5	1	1	1	2	2	2	2	Protein	of	unknown	function	DUF47
PhoU	PF01895.14	gi|146304962|ref|YP_001192278.1|	-	0.00054	20.3	14.4	0.0012	19.2	3.2	2.9	2	1	1	3	3	3	2	PhoU	domain
A_deaminase_N	PF08451.6	gi|146304962|ref|YP_001192278.1|	-	0.093	12.7	0.5	5.4	7.1	0.1	2.2	2	0	0	2	2	2	0	Adenosine/AMP	deaminase	N-terminal
SpoIIID	PF12116.3	gi|146304962|ref|YP_001192278.1|	-	1.7	8.6	4.0	2	8.4	0.1	3.0	4	1	0	4	4	4	0	Stage	III	sporulation	protein	D
tRNA_int_endo	PF01974.12	gi|146304963|ref|YP_001192279.1|	-	1.6e-25	88.7	0.1	2.4e-25	88.1	0.1	1.3	1	0	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
tRNA_int_endo_N	PF02778.9	gi|146304963|ref|YP_001192279.1|	-	2.5e-20	71.7	0.1	1.9e-19	68.9	0.1	2.1	2	0	0	2	2	2	1	tRNA	intron	endonuclease,	N-terminal	domain
tRNA_int_end_N2	PF12928.2	gi|146304963|ref|YP_001192279.1|	-	0.029	13.8	0.0	0.47	9.9	0.0	2.2	1	1	1	2	2	2	0	tRNA-splicing	endonuclease	subunit	sen54	N-term
DUF1170	PF06663.8	gi|146304964|ref|YP_001192280.1|	-	0.1	12.5	0.2	0.15	11.9	0.1	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1170)
Fer4_18	PF13746.1	gi|146304964|ref|YP_001192280.1|	-	0.42	11.0	4.7	3	8.3	3.2	2.2	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Flavoprotein	PF02441.14	gi|146304965|ref|YP_001192281.1|	-	3.1e-23	81.8	0.4	4.3e-23	81.3	0.3	1.1	1	0	0	1	1	1	1	Flavoprotein
FANCL_C	PF11793.3	gi|146304966|ref|YP_001192282.1|	-	0.0032	17.4	5.3	0.0039	17.1	3.7	1.1	1	0	0	1	1	1	1	FANCL	C-terminal	domain
zf-SNAP50_C	PF12251.3	gi|146304966|ref|YP_001192282.1|	-	0.014	14.7	2.1	0.015	14.6	1.4	1.0	1	0	0	1	1	1	0	snRNA-activating	protein	of	50kDa	MW	C	terminal
Corona_NS8	PF12093.3	gi|146304966|ref|YP_001192282.1|	-	0.045	14.0	1.7	0.048	14.0	1.2	1.1	1	0	0	1	1	1	0	Coronavirus	NS8	protein
DUF329	PF03884.9	gi|146304966|ref|YP_001192282.1|	-	0.069	12.7	8.3	0.13	11.8	5.7	1.5	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF329)
Arc_trans_TRASH	PF08394.5	gi|146304966|ref|YP_001192282.1|	-	0.17	12.1	6.6	0.25	11.5	4.5	1.4	1	0	0	1	1	1	0	Archaeal	TRASH	domain
zf-FCS	PF06467.9	gi|146304966|ref|YP_001192282.1|	-	0.78	9.4	9.2	2.9	7.5	6.4	2.2	1	1	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
zf-HIT	PF04438.11	gi|146304966|ref|YP_001192282.1|	-	2.6	7.7	7.4	5	6.8	2.4	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
Thi4	PF01946.12	gi|146304967|ref|YP_001192283.1|	-	7.2e-85	283.7	1.7	8.5e-85	283.4	1.2	1.1	1	0	0	1	1	1	1	Thi4	family
DAO	PF01266.19	gi|146304967|ref|YP_001192283.1|	-	4.9e-13	48.7	4.2	2.7e-08	33.1	0.8	2.1	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
FAD_oxidored	PF12831.2	gi|146304967|ref|YP_001192283.1|	-	3.4e-12	46.1	2.1	4.4e-12	45.8	1.5	1.1	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.19	gi|146304967|ref|YP_001192283.1|	-	7.4e-10	38.2	6.9	7.5e-06	25.0	1.2	3.1	3	0	0	3	3	3	3	FAD	binding	domain
NAD_binding_8	PF13450.1	gi|146304967|ref|YP_001192283.1|	-	2.3e-09	37.1	0.7	6.6e-09	35.6	0.5	1.8	2	0	0	2	2	2	1	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_2	PF07992.9	gi|146304967|ref|YP_001192283.1|	-	7.7e-06	25.9	2.0	1e-05	25.5	1.2	1.5	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.9	gi|146304967|ref|YP_001192283.1|	-	1.7e-05	23.4	0.3	2.4e-05	23.0	0.2	1.3	1	0	0	1	1	1	1	HI0933-like	protein
Pyr_redox_3	PF13738.1	gi|146304967|ref|YP_001192283.1|	-	2.7e-05	24.3	0.4	0.00012	22.1	0.3	2.0	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
GIDA	PF01134.17	gi|146304967|ref|YP_001192283.1|	-	5.3e-05	22.2	0.8	0.00011	21.2	0.5	1.5	1	0	0	1	1	1	1	Glucose	inhibited	division	protein	A
FAD_binding_3	PF01494.14	gi|146304967|ref|YP_001192283.1|	-	0.00021	20.4	0.1	0.0003	19.9	0.1	1.3	1	1	0	1	1	1	1	FAD	binding	domain
Pyr_redox	PF00070.22	gi|146304967|ref|YP_001192283.1|	-	0.00067	20.0	1.9	0.0017	18.6	0.4	2.4	2	1	1	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.7	gi|146304967|ref|YP_001192283.1|	-	0.0073	15.2	0.3	0.032	13.1	0.2	1.9	1	1	0	1	1	1	1	Lycopene	cyclase	protein
GMC_oxred_N	PF00732.14	gi|146304967|ref|YP_001192283.1|	-	0.064	12.3	0.0	0.11	11.6	0.0	1.3	1	0	0	1	1	1	0	GMC	oxidoreductase
K_oxygenase	PF13434.1	gi|146304967|ref|YP_001192283.1|	-	0.077	11.8	0.0	0.13	11.2	0.0	1.3	1	0	0	1	1	1	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.19	gi|146304967|ref|YP_001192283.1|	-	0.1	11.6	0.1	0.18	10.8	0.1	1.4	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Ribosomal_S24e	PF01282.14	gi|146304968|ref|YP_001192284.1|	-	2.7e-18	65.5	0.3	4.5e-18	64.8	0.0	1.4	2	0	0	2	2	2	1	Ribosomal	protein	S24e
Ribosomal_S27	PF01599.14	gi|146304969|ref|YP_001192285.1|	-	1.5e-09	37.4	2.6	2.1e-09	37.0	1.8	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S27a
Zn_Tnp_IS1595	PF12760.2	gi|146304969|ref|YP_001192285.1|	-	4.2e-05	23.2	5.3	4.8e-05	23.0	3.7	1.3	1	1	0	1	1	1	1	Transposase	zinc-ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|146304969|ref|YP_001192285.1|	-	0.00017	21.1	0.5	0.00019	21.0	0.4	1.2	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
zf-ribbon_3	PF13248.1	gi|146304969|ref|YP_001192285.1|	-	0.0037	16.4	1.4	0.12	11.6	0.0	2.2	2	0	0	2	2	2	1	zinc-ribbon	domain
DZR	PF12773.2	gi|146304969|ref|YP_001192285.1|	-	0.0041	16.9	0.8	0.0062	16.3	0.6	1.3	1	0	0	1	1	1	1	Double	zinc	ribbon
DUF2082	PF09855.4	gi|146304969|ref|YP_001192285.1|	-	0.0043	16.8	4.0	0.16	11.8	0.2	2.2	1	1	1	2	2	2	1	Nucleic-acid-binding	protein	containing	Zn-ribbon	domain	(DUF2082)
RNA_POL_M_15KD	PF02150.11	gi|146304969|ref|YP_001192285.1|	-	0.0064	16.1	0.3	0.01	15.5	0.2	1.4	1	1	0	1	1	1	1	RNA	polymerases	M/15	Kd	subunit
FlhC	PF05280.6	gi|146304969|ref|YP_001192285.1|	-	0.007	15.8	0.3	0.0076	15.7	0.2	1.1	1	0	0	1	1	1	1	Flagellar	transcriptional	activator	(FlhC)
Nudix_N_2	PF14803.1	gi|146304969|ref|YP_001192285.1|	-	0.027	14.1	3.3	0.06	13.0	2.3	1.6	1	1	0	1	1	1	0	Nudix	N-terminal
zf-tcix	PF14952.1	gi|146304969|ref|YP_001192285.1|	-	0.032	13.5	0.2	0.032	13.5	0.1	2.0	2	0	0	2	2	2	0	Putative	treble-clef,	zinc-finger,	Zn-binding
zinc_ribbon_2	PF13240.1	gi|146304969|ref|YP_001192285.1|	-	0.032	13.7	2.4	0.31	10.5	0.1	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
IBR	PF01485.16	gi|146304969|ref|YP_001192285.1|	-	0.035	13.9	0.8	0.04	13.7	0.5	1.1	1	0	0	1	1	1	0	IBR	domain
Zn_Tnp_IS91	PF14319.1	gi|146304969|ref|YP_001192285.1|	-	0.041	13.3	0.6	0.042	13.3	0.4	1.1	1	0	0	1	1	1	0	Transposase	zinc-binding	domain
YhfH	PF14149.1	gi|146304969|ref|YP_001192285.1|	-	0.044	13.5	1.3	0.044	13.5	0.9	2.0	2	0	0	2	2	2	0	YhfH-like	protein
GFA	PF04828.9	gi|146304969|ref|YP_001192285.1|	-	0.053	13.4	2.2	0.88	9.5	0.1	2.1	1	1	1	2	2	2	0	Glutathione-dependent	formaldehyde-activating	enzyme
DUF2387	PF09526.5	gi|146304969|ref|YP_001192285.1|	-	0.062	13.2	0.6	0.099	12.5	0.4	1.3	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
FAM72	PF14976.1	gi|146304969|ref|YP_001192285.1|	-	0.073	12.8	0.2	0.076	12.8	0.1	1.1	1	0	0	1	1	1	0	FAM72	protein
zf-ISL3	PF14690.1	gi|146304969|ref|YP_001192285.1|	-	0.11	12.5	0.9	0.11	12.5	0.6	2.1	1	1	1	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
UPF0547	PF10571.4	gi|146304969|ref|YP_001192285.1|	-	0.12	12.1	4.1	0.18	11.5	0.2	2.1	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
TFIIS_C	PF01096.13	gi|146304969|ref|YP_001192285.1|	-	0.13	11.8	2.1	1.2	8.8	0.3	2.1	2	0	0	2	2	2	0	Transcription	factor	S-II	(TFIIS)
HypA	PF01155.14	gi|146304969|ref|YP_001192285.1|	-	0.14	11.8	0.7	0.18	11.4	0.5	1.3	1	1	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
A2L_zn_ribbon	PF08792.5	gi|146304969|ref|YP_001192285.1|	-	0.15	11.5	1.0	6.7	6.2	0.1	2.1	2	0	0	2	2	2	0	A2L	zinc	ribbon	domain
zf-C4_Topoisom	PF01396.14	gi|146304969|ref|YP_001192285.1|	-	0.18	11.3	4.0	0.42	10.1	2.8	1.7	1	1	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
DUF2072	PF09845.4	gi|146304969|ref|YP_001192285.1|	-	0.31	10.9	1.6	0.72	9.7	1.1	1.6	1	1	0	1	1	1	0	Zn-ribbon	containing	protein	(DUF2072)
FeS	PF04060.8	gi|146304969|ref|YP_001192285.1|	-	0.61	9.7	4.2	1.3	8.6	0.3	2.5	3	0	0	3	3	2	0	Putative	Fe-S	cluster
zf-NADH-PPase	PF09297.6	gi|146304969|ref|YP_001192285.1|	-	0.72	9.4	6.5	3.1	7.4	0.1	2.3	2	0	0	2	2	2	0	NADH	pyrophosphatase	zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146304969|ref|YP_001192285.1|	-	0.73	9.4	4.6	2.2	7.9	0.8	2.5	2	1	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146304969|ref|YP_001192285.1|	-	0.9	9.5	4.9	0.84	9.6	0.4	2.0	1	1	0	2	2	2	0	Zinc	ribbon	domain
Zn_ribbon_recom	PF13408.1	gi|146304969|ref|YP_001192285.1|	-	1.1	9.6	6.0	2.8	8.2	4.1	1.8	1	1	0	1	1	1	0	Recombinase	zinc	beta	ribbon	domain
Auto_anti-p27	PF06677.7	gi|146304969|ref|YP_001192285.1|	-	1.5	8.6	5.8	11	5.9	4.4	2.0	1	1	1	2	2	2	0	Sjogren's	syndrome/scleroderma	autoantigen	1	(Autoantigen	p27)
zf-IS66	PF13005.2	gi|146304969|ref|YP_001192285.1|	-	2.2	8.3	6.7	1.3	9.0	0.3	2.2	1	1	1	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
TF_Zn_Ribbon	PF08271.7	gi|146304969|ref|YP_001192285.1|	-	2.7	7.3	6.4	32	3.9	4.5	2.1	1	1	0	1	1	1	0	TFIIB	zinc-binding
Rubredoxin	PF00301.15	gi|146304969|ref|YP_001192285.1|	-	3.3	7.6	6.1	1.9e+02	2.0	4.2	2.2	1	1	0	1	1	1	0	Rubredoxin
ADK_lid	PF05191.9	gi|146304969|ref|YP_001192285.1|	-	3.5	7.3	6.7	17	5.1	0.7	2.2	1	1	0	1	1	1	0	Adenylate	kinase,	active	site	lid
zf-TFIIB	PF13453.1	gi|146304969|ref|YP_001192285.1|	-	4.4	6.5	5.7	14	4.9	4.0	1.8	1	1	0	1	1	1	0	Transcription	factor	zinc-finger
Peptidase_M22	PF00814.20	gi|146304970|ref|YP_001192286.1|	-	4.9e-70	236.0	0.0	5.9e-70	235.8	0.0	1.0	1	0	0	1	1	1	1	Glycoprotease	family
CheX	PF13690.1	gi|146304970|ref|YP_001192286.1|	-	0.068	13.0	0.0	0.19	11.5	0.0	1.8	1	1	0	1	1	1	0	Chemotaxis	phosphatase	CheX
RIO1	PF01163.17	gi|146304971|ref|YP_001192287.1|	-	5.3e-10	38.9	0.1	9.1e-10	38.1	0.0	1.4	1	1	0	1	1	1	1	RIO1	family
Pkinase	PF00069.20	gi|146304971|ref|YP_001192287.1|	-	2.2e-07	30.2	0.3	3e-07	29.8	0.2	1.2	1	0	0	1	1	1	1	Protein	kinase	domain
Kdo	PF06293.9	gi|146304971|ref|YP_001192287.1|	-	2.8e-07	29.8	0.0	7.5e-07	28.4	0.0	1.7	1	1	0	1	1	1	1	Lipopolysaccharide	kinase	(Kdo/WaaP)	family
APH	PF01636.18	gi|146304971|ref|YP_001192287.1|	-	8e-06	25.7	0.1	0.00024	20.9	0.3	2.2	1	1	1	2	2	2	1	Phosphotransferase	enzyme	family
EcKinase	PF02958.15	gi|146304971|ref|YP_001192287.1|	-	1.6e-05	24.2	0.0	1.8e-05	24.0	0.0	1.2	1	0	0	1	1	1	1	Ecdysteroid	kinase
Pkinase_Tyr	PF07714.12	gi|146304971|ref|YP_001192287.1|	-	4.4e-05	22.6	0.2	8.7e-05	21.7	0.1	1.5	1	1	0	1	1	1	1	Protein	tyrosine	kinase
WaaY	PF06176.6	gi|146304971|ref|YP_001192287.1|	-	9.2e-05	21.7	0.3	0.00013	21.3	0.2	1.3	1	0	0	1	1	1	1	Lipopolysaccharide	core	biosynthesis	protein	(WaaY)
Choline_kinase	PF01633.15	gi|146304971|ref|YP_001192287.1|	-	0.014	14.9	1.6	0.28	10.7	0.6	2.2	1	1	1	2	2	2	0	Choline/ethanolamine	kinase
Ham1p_like	PF01725.11	gi|146304972|ref|YP_001192288.1|	-	3.3e-49	166.8	0.0	3.6e-49	166.6	0.0	1.0	1	0	0	1	1	1	1	Ham1	family
Aldo_ket_red	PF00248.16	gi|146304973|ref|YP_001192289.1|	-	2.1e-49	167.9	0.0	3.5e-49	167.1	0.0	1.4	1	1	0	1	1	1	1	Aldo/keto	reductase	family
vATP-synt_AC39	PF01992.11	gi|146304975|ref|YP_001192291.1|	-	0.014	14.4	0.0	4.1	6.4	0.0	2.7	2	1	0	2	2	2	0	ATP	synthase	(C/AC39)	subunit
CHASE3	PF05227.8	gi|146304976|ref|YP_001192292.1|	-	0.0088	15.7	6.9	0.018	14.7	4.8	1.5	1	1	0	1	1	1	1	CHASE3	domain
DUF445	PF04286.7	gi|146304976|ref|YP_001192292.1|	-	0.0094	15.5	7.4	0.011	15.2	5.1	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF445)
DUF148	PF02520.12	gi|146304976|ref|YP_001192292.1|	-	0.016	15.0	10.5	0.018	14.8	6.3	1.7	1	1	1	2	2	2	0	Domain	of	unknown	function	DUF148
Mod_r	PF07200.8	gi|146304976|ref|YP_001192292.1|	-	0.022	14.6	2.9	0.022	14.6	2.0	2.1	1	1	1	2	2	2	0	Modifier	of	rudimentary	(Mod(r))	protein
Dynamin_M	PF01031.15	gi|146304976|ref|YP_001192292.1|	-	0.024	13.4	3.1	0.029	13.1	2.1	1.1	1	0	0	1	1	1	0	Dynamin	central	region
GLYCAM-1	PF05242.6	gi|146304976|ref|YP_001192292.1|	-	0.056	13.3	6.5	1.2	9.0	0.2	2.1	1	1	1	2	2	2	0	Glycosylation-dependent	cell	adhesion	molecule	1	(GlyCAM-1)
Mitofilin	PF09731.4	gi|146304976|ref|YP_001192292.1|	-	0.086	11.4	19.3	0.13	10.9	13.4	1.3	1	1	0	1	1	1	0	Mitochondrial	inner	membrane	protein
ECIST_Cterm	PF14784.1	gi|146304976|ref|YP_001192292.1|	-	0.14	12.1	1.4	0.17	11.8	1.0	1.2	1	0	0	1	1	1	0	C-terminal	domain	of	the	ECSIT	protein
CHDCT2	PF08074.6	gi|146304976|ref|YP_001192292.1|	-	0.16	11.6	6.1	0.2	11.3	4.2	1.2	1	0	0	1	1	1	0	CHDCT2	(NUC038)	domain
Exonuc_VII_L	PF02601.10	gi|146304976|ref|YP_001192292.1|	-	0.2	10.8	7.5	0.23	10.6	5.2	1.2	1	0	0	1	1	1	0	Exonuclease	VII,	large	subunit
HSCB_C	PF07743.8	gi|146304976|ref|YP_001192292.1|	-	0.25	11.8	14.8	0.52	10.7	5.0	2.2	1	1	1	2	2	2	0	HSCB	C-terminal	oligomerisation	domain
HrpE	PF06188.7	gi|146304976|ref|YP_001192292.1|	-	0.28	10.8	6.8	0.34	10.6	4.7	1.2	1	0	0	1	1	1	0	HrpE/YscL/FliH	and	V-type	ATPase	subunit	E
RHD3	PF05879.7	gi|146304976|ref|YP_001192292.1|	-	0.29	8.9	8.3	0.32	8.8	5.7	1.0	1	0	0	1	1	1	0	Root	hair	defective	3	GTP-binding	protein	(RHD3)
Phasin	PF05597.6	gi|146304976|ref|YP_001192292.1|	-	0.45	10.2	9.2	1.3	8.8	5.1	1.9	1	1	0	1	1	1	0	Poly(hydroxyalcanoate)	granule	associated	protein	(phasin)
DUF3435	PF11917.3	gi|146304976|ref|YP_001192292.1|	-	0.8	8.3	6.2	0.93	8.1	4.3	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3435)
DUF883	PF05957.8	gi|146304976|ref|YP_001192292.1|	-	0.83	10.0	9.8	1.7	9.0	1.9	2.5	1	1	1	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF883)
OmpH	PF03938.9	gi|146304976|ref|YP_001192292.1|	-	0.99	9.3	16.2	2.1	8.2	11.2	1.5	1	1	0	1	1	1	0	Outer	membrane	protein	(OmpH-like)
ATP-synt_E_2	PF08112.6	gi|146304976|ref|YP_001192292.1|	-	1.1	9.3	10.2	1.1	9.4	1.8	2.7	1	1	2	3	3	3	0	ATP	synthase	epsilon	subunit
IZUMO	PF15005.1	gi|146304976|ref|YP_001192292.1|	-	1.7	8.6	4.7	2.3	8.2	3.3	1.2	1	0	0	1	1	1	0	Izumo	sperm-egg	fusion
DUF3209	PF11483.3	gi|146304976|ref|YP_001192292.1|	-	2.1	8.6	6.4	17	5.7	0.8	2.5	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3209)
DUF885	PF05960.6	gi|146304976|ref|YP_001192292.1|	-	2.5	7.1	7.5	2.9	6.9	5.2	1.1	1	0	0	1	1	1	0	Bacterial	protein	of	unknown	function	(DUF885)
DUF4351	PF14261.1	gi|146304976|ref|YP_001192292.1|	-	2.5	8.0	9.3	3.4	7.5	1.5	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4351)
ATP-synt_B	PF00430.13	gi|146304976|ref|YP_001192292.1|	-	2.6	7.8	19.0	4.3	7.1	13.2	1.5	1	1	0	1	1	1	0	ATP	synthase	B/B'	CF(0)
GlutR_dimer	PF00745.15	gi|146304976|ref|YP_001192292.1|	-	3	7.8	12.1	1.3	8.9	2.3	2.5	1	1	1	2	2	2	0	Glutamyl-tRNAGlu	reductase,	dimerisation	domain
DUF2317	PF10079.4	gi|146304976|ref|YP_001192292.1|	-	3.6	6.0	9.6	3	6.3	5.7	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2317)
Spore_GerAC	PF05504.6	gi|146304976|ref|YP_001192292.1|	-	5.6	6.7	9.5	18	5.0	6.6	1.9	1	1	0	1	1	1	0	Spore	germination	B3/	GerAC	like,	C-terminal
DUF2203	PF09969.4	gi|146304976|ref|YP_001192292.1|	-	6.6	6.9	9.5	13	6.0	4.3	2.0	1	1	1	2	2	2	0	Uncharacterized	conserved	protein	(DUF2203)
GCD14	PF08704.5	gi|146304977|ref|YP_001192293.1|	-	1.6e-32	112.9	0.0	2.1e-32	112.5	0.0	1.1	1	0	0	1	1	1	1	tRNA	methyltransferase	complex	GCD14	subunit
Methyltransf_31	PF13847.1	gi|146304977|ref|YP_001192293.1|	-	4e-12	45.9	0.0	5.3e-12	45.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
PCMT	PF01135.14	gi|146304977|ref|YP_001192293.1|	-	4.5e-11	42.6	0.0	6.3e-11	42.2	0.0	1.2	1	0	0	1	1	1	1	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_18	PF12847.2	gi|146304977|ref|YP_001192293.1|	-	7.3e-11	42.6	0.0	1.3e-10	41.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_26	PF13659.1	gi|146304977|ref|YP_001192293.1|	-	1.2e-07	31.8	0.0	2.9e-07	30.5	0.0	1.6	1	1	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.13	gi|146304977|ref|YP_001192293.1|	-	3.9e-07	29.4	0.0	6.4e-07	28.7	0.0	1.3	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
PrmA	PF06325.8	gi|146304977|ref|YP_001192293.1|	-	6.1e-05	22.2	0.0	8.5e-05	21.8	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_24	PF13578.1	gi|146304977|ref|YP_001192293.1|	-	6.3e-05	23.7	0.0	0.00034	21.4	0.0	1.9	2	0	0	2	2	2	1	Methyltransferase	domain
MTS	PF05175.9	gi|146304977|ref|YP_001192293.1|	-	7.8e-05	22.1	0.0	0.00011	21.6	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
RrnaAD	PF00398.15	gi|146304977|ref|YP_001192293.1|	-	9.8e-05	21.4	0.0	0.00014	20.9	0.0	1.1	1	0	0	1	1	1	1	Ribosomal	RNA	adenine	dimethylase
Methyltransf_11	PF08241.7	gi|146304977|ref|YP_001192293.1|	-	0.00013	22.3	0.0	0.00034	21.0	0.0	1.7	1	1	0	1	1	1	1	Methyltransferase	domain
UPF0020	PF01170.13	gi|146304977|ref|YP_001192293.1|	-	0.00016	21.3	0.0	0.00027	20.5	0.0	1.3	1	0	0	1	1	1	1	Putative	RNA	methylase	family	UPF0020
Methyltransf_3	PF01596.12	gi|146304977|ref|YP_001192293.1|	-	0.00019	20.5	0.0	0.00028	19.9	0.0	1.2	1	0	0	1	1	1	1	O-methyltransferase
Methyltransf_23	PF13489.1	gi|146304977|ref|YP_001192293.1|	-	0.00032	20.4	0.0	0.0029	17.3	0.0	2.1	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_32	PF13679.1	gi|146304977|ref|YP_001192293.1|	-	0.00044	19.9	0.0	0.0007	19.2	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_16	PF10294.4	gi|146304977|ref|YP_001192293.1|	-	0.0025	17.2	0.0	0.0033	16.8	0.0	1.2	1	0	0	1	1	1	1	Putative	methyltransferase
Methyltransf_25	PF13649.1	gi|146304977|ref|YP_001192293.1|	-	0.0037	17.5	0.0	0.006	16.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|146304977|ref|YP_001192293.1|	-	0.017	14.6	0.0	0.026	14.1	0.0	1.4	1	1	0	1	1	1	0	RNA	cap	guanine-N2	methyltransferase
Met_10	PF02475.11	gi|146304977|ref|YP_001192293.1|	-	0.041	13.4	0.0	0.059	12.9	0.0	1.2	1	0	0	1	1	1	0	Met-10+	like-protein
Methyltransf_12	PF08242.7	gi|146304977|ref|YP_001192293.1|	-	0.048	14.1	0.0	0.25	11.8	0.0	2.2	2	1	0	2	2	1	0	Methyltransferase	domain
CMAS	PF02353.15	gi|146304977|ref|YP_001192293.1|	-	0.052	12.6	0.0	0.086	11.8	0.0	1.2	1	0	0	1	1	1	0	Mycolic	acid	cyclopropane	synthetase
RHH_2	PF03693.9	gi|146304978|ref|YP_001192294.1|	-	6e-06	26.3	0.0	6.2e-06	26.2	0.0	1.1	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0156)
RHH_1	PF01402.16	gi|146304978|ref|YP_001192294.1|	-	1.4e-05	24.7	0.0	1.6e-05	24.5	0.0	1.1	1	0	0	1	1	1	1	Ribbon-helix-helix	protein,	copG	family
DUF2191	PF09957.4	gi|146304978|ref|YP_001192294.1|	-	0.06	13.1	0.0	0.08	12.7	0.0	1.4	1	1	0	1	1	1	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2191)
TrmB	PF01978.14	gi|146304979|ref|YP_001192295.1|	-	2.1e-19	69.0	0.2	4.8e-19	67.8	0.1	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_24	PF13412.1	gi|146304979|ref|YP_001192295.1|	-	7.4e-09	34.8	1.2	7.4e-09	34.8	0.8	1.9	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_27	PF13463.1	gi|146304979|ref|YP_001192295.1|	-	7.8e-05	22.9	0.1	0.00034	20.8	0.0	2.0	2	0	0	2	2	2	1	Winged	helix	DNA-binding	domain
Penicillinase_R	PF03965.11	gi|146304979|ref|YP_001192295.1|	-	0.00012	22.1	0.1	0.00032	20.7	0.0	1.8	1	1	1	2	2	2	1	Penicillinase	repressor
HTH_28	PF13518.1	gi|146304979|ref|YP_001192295.1|	-	0.0002	21.3	0.1	0.0018	18.2	0.0	2.3	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.17	gi|146304979|ref|YP_001192295.1|	-	0.00046	19.8	0.1	0.0012	18.4	0.1	1.7	1	0	0	1	1	1	1	MarR	family
Mga	PF05043.8	gi|146304979|ref|YP_001192295.1|	-	0.0021	18.3	0.1	0.0077	16.4	0.1	1.9	1	0	0	1	1	1	1	Mga	helix-turn-helix	domain
MarR_2	PF12802.2	gi|146304979|ref|YP_001192295.1|	-	0.0022	17.6	0.0	0.0071	15.9	0.0	1.8	1	1	1	2	2	2	1	MarR	family
HTH_29	PF13551.1	gi|146304979|ref|YP_001192295.1|	-	0.0026	17.9	0.0	0.019	15.1	0.0	2.1	2	0	0	2	2	2	1	Winged	helix-turn	helix
PadR	PF03551.9	gi|146304979|ref|YP_001192295.1|	-	0.0034	17.1	0.0	0.0077	15.9	0.0	1.6	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_23	PF13384.1	gi|146304979|ref|YP_001192295.1|	-	0.0048	16.5	0.1	0.21	11.2	0.0	2.5	2	0	0	2	2	2	1	Homeodomain-like	domain
FeoC	PF09012.5	gi|146304979|ref|YP_001192295.1|	-	0.0055	16.3	0.0	0.012	15.3	0.0	1.5	1	0	0	1	1	1	1	FeoC	like	transcriptional	regulator
HTH_34	PF13601.1	gi|146304979|ref|YP_001192295.1|	-	0.014	15.4	0.0	0.029	14.4	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
TFIIE_alpha	PF02002.12	gi|146304979|ref|YP_001192295.1|	-	0.017	14.6	0.1	0.043	13.3	0.0	1.8	1	0	0	1	1	1	0	TFIIE	alpha	subunit
HTH_Crp_2	PF13545.1	gi|146304979|ref|YP_001192295.1|	-	0.028	14.1	0.0	0.15	11.8	0.0	2.2	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2250	PF10007.4	gi|146304979|ref|YP_001192295.1|	-	0.029	14.2	0.0	0.059	13.2	0.0	1.4	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2250)
HTH_10	PF04967.7	gi|146304979|ref|YP_001192295.1|	-	0.042	13.4	0.1	0.43	10.2	0.0	2.2	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_36	PF13730.1	gi|146304979|ref|YP_001192295.1|	-	0.046	13.8	0.5	0.21	11.7	0.3	2.2	1	1	1	2	2	2	0	Helix-turn-helix	domain
HTH_9	PF08221.6	gi|146304979|ref|YP_001192295.1|	-	0.059	13.2	0.1	0.18	11.6	0.0	1.8	1	0	0	1	1	1	0	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_IclR	PF09339.5	gi|146304979|ref|YP_001192295.1|	-	0.07	12.7	0.0	0.17	11.4	0.0	1.6	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
HTH_5	PF01022.15	gi|146304979|ref|YP_001192295.1|	-	0.093	12.4	0.0	0.44	10.2	0.0	2.2	2	1	1	3	3	3	0	Bacterial	regulatory	protein,	arsR	family
NUMOD1	PF07453.8	gi|146304979|ref|YP_001192295.1|	-	0.11	12.4	2.0	0.49	10.3	0.5	2.4	2	0	0	2	2	2	0	NUMOD1	domain
HTH_11	PF08279.7	gi|146304979|ref|YP_001192295.1|	-	0.14	11.8	2.4	0.22	11.2	0.2	2.4	2	1	1	3	3	3	0	HTH	domain
HTH_45	PF14947.1	gi|146304979|ref|YP_001192295.1|	-	0.19	11.5	1.6	0.3	10.9	0.1	2.1	2	1	0	3	3	3	0	Winged	helix-turn-helix
DUF3760	PF12586.3	gi|146304979|ref|YP_001192295.1|	-	0.32	10.8	1.7	1.3	8.9	1.2	2.2	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3760)
Ribosomal_S25	PF03297.10	gi|146304980|ref|YP_001192296.1|	-	6e-12	45.5	10.1	7e-12	45.3	7.0	1.0	1	0	0	1	1	1	1	S25	ribosomal	protein
Rrf2	PF02082.15	gi|146304980|ref|YP_001192296.1|	-	0.0054	16.8	1.6	0.19	11.8	0.1	2.1	1	1	1	2	2	2	1	Transcriptional	regulator
DDRGK	PF09756.4	gi|146304980|ref|YP_001192296.1|	-	0.018	14.4	7.7	0.023	14.1	5.4	1.1	1	0	0	1	1	1	0	DDRGK	domain
HTH_24	PF13412.1	gi|146304980|ref|YP_001192296.1|	-	0.024	13.9	0.2	0.044	13.1	0.1	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
TFIIF_alpha	PF05793.7	gi|146304980|ref|YP_001192296.1|	-	0.027	12.8	4.2	0.027	12.8	2.9	1.1	1	0	0	1	1	1	0	Transcription	initiation	factor	IIF,	alpha	subunit	(TFIIF-alpha)
HTH_11	PF08279.7	gi|146304980|ref|YP_001192296.1|	-	0.028	14.0	0.4	0.057	13.0	0.3	1.6	1	0	0	1	1	1	0	HTH	domain
Pox_VLTF3	PF04947.9	gi|146304980|ref|YP_001192296.1|	-	0.029	13.8	7.0	0.036	13.5	4.6	1.4	1	1	0	1	1	1	0	Poxvirus	Late	Transcription	Factor	VLTF3	like
Blo-t-5	PF11642.3	gi|146304980|ref|YP_001192296.1|	-	0.031	14.0	3.5	0.038	13.7	2.4	1.1	1	0	0	1	1	1	0	Mite	allergen	Blo	t	5
HTH_Crp_2	PF13545.1	gi|146304980|ref|YP_001192296.1|	-	0.045	13.5	0.8	2.3	8.0	0.1	2.1	1	1	1	2	2	2	0	Crp-like	helix-turn-helix	domain
DUF2120	PF09893.4	gi|146304980|ref|YP_001192296.1|	-	0.068	13.1	0.8	0.089	12.7	0.6	1.2	1	0	0	1	1	1	0	Uncharacterized	protein	conserved	in	archaea	(DUF2120)
DUF4570	PF15134.1	gi|146304980|ref|YP_001192296.1|	-	0.098	12.5	2.3	0.13	12.1	1.3	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4570)
IF-2B	PF01008.12	gi|146304980|ref|YP_001192296.1|	-	0.18	10.7	3.8	0.2	10.6	2.6	1.1	1	0	0	1	1	1	0	Initiation	factor	2	subunit	family
DUF3464	PF11947.3	gi|146304980|ref|YP_001192296.1|	-	1.8	8.0	5.4	2.3	7.6	3.7	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3464)
CRA	PF06589.6	gi|146304980|ref|YP_001192296.1|	-	1.9	7.7	7.3	2.4	7.4	5.1	1.1	1	0	0	1	1	1	0	Circumsporozoite-related	antigen	(CRA)
CN_hydrolase	PF00795.17	gi|146304981|ref|YP_001192297.1|	-	1.9e-11	43.6	0.0	3.5e-11	42.7	0.0	1.4	1	0	0	1	1	1	1	Carbon-nitrogen	hydrolase
AP_endonuc_2	PF01261.19	gi|146304981|ref|YP_001192297.1|	-	0.074	12.3	0.0	0.13	11.5	0.0	1.3	1	0	0	1	1	1	0	Xylose	isomerase-like	TIM	barrel
Aromatic_hydrox	PF11723.3	gi|146304981|ref|YP_001192297.1|	-	0.14	11.4	0.0	0.33	10.2	0.0	1.6	1	1	1	2	2	2	0	Homotrimeric	ring	hydroxylase
Topoisom_bac	PF01131.15	gi|146304982|ref|YP_001192298.1|	-	2.6e-81	273.4	0.3	5.3e-81	272.4	0.2	1.5	1	0	0	1	1	1	1	DNA	topoisomerase
Toprim	PF01751.17	gi|146304982|ref|YP_001192298.1|	-	9.2e-24	83.3	0.0	4.5e-23	81.1	0.0	2.3	1	0	0	1	1	1	1	Toprim	domain
DEAD	PF00270.24	gi|146304982|ref|YP_001192298.1|	-	3e-13	49.6	0.0	9.9e-13	47.9	0.0	1.9	1	0	0	1	1	1	1	DEAD/DEAH	box	helicase
TF_Zn_Ribbon	PF08271.7	gi|146304982|ref|YP_001192298.1|	-	0.015	14.6	4.3	0.15	11.4	0.6	2.5	2	0	0	2	2	2	0	TFIIB	zinc-binding
ResIII	PF04851.10	gi|146304982|ref|YP_001192298.1|	-	0.022	14.5	0.0	0.049	13.4	0.0	1.5	1	0	0	1	1	1	0	Type	III	restriction	enzyme,	res	subunit
AAA_25	PF13481.1	gi|146304982|ref|YP_001192298.1|	-	0.084	12.2	0.0	0.18	11.1	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
OrfB_Zn_ribbon	PF07282.6	gi|146304982|ref|YP_001192298.1|	-	0.11	12.1	5.0	1.3	8.7	0.1	2.5	2	0	0	2	2	2	0	Putative	transposase	DNA-binding	domain
AAA_19	PF13245.1	gi|146304982|ref|YP_001192298.1|	-	0.15	11.7	0.0	0.52	10.1	0.0	1.9	1	0	0	1	1	1	0	Part	of	AAA	domain
AAA	PF00004.24	gi|146304983|ref|YP_001192299.1|	-	7.3e-99	327.1	0.0	1.6e-48	164.2	0.0	2.6	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
CDC48_N	PF02359.13	gi|146304983|ref|YP_001192299.1|	-	1.3e-23	82.7	0.1	4.7e-23	80.9	0.1	2.0	1	0	0	1	1	1	1	Cell	division	protein	48	(CDC48),	N-terminal	domain
RuvB_N	PF05496.7	gi|146304983|ref|YP_001192299.1|	-	7.5e-18	64.4	0.1	1.3e-09	37.5	0.0	3.1	1	1	1	3	3	3	2	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_2	PF07724.9	gi|146304983|ref|YP_001192299.1|	-	9.3e-15	54.9	0.0	3.9e-07	30.1	0.0	2.6	2	0	0	2	2	2	2	AAA	domain	(Cdc48	subfamily)
AAA_16	PF13191.1	gi|146304983|ref|YP_001192299.1|	-	3.2e-14	53.3	0.1	3e-07	30.6	0.0	3.3	3	1	1	4	4	4	2	AAA	ATPase	domain
CDC48_2	PF02933.12	gi|146304983|ref|YP_001192299.1|	-	5.2e-14	51.6	0.2	5.2e-14	51.6	0.2	2.3	2	0	0	2	2	1	1	Cell	division	protein	48	(CDC48),	domain	2
AAA_22	PF13401.1	gi|146304983|ref|YP_001192299.1|	-	2.7e-13	50.1	0.5	1.5e-05	25.1	0.0	4.5	3	2	1	4	4	3	2	AAA	domain
AAA_17	PF13207.1	gi|146304983|ref|YP_001192299.1|	-	2.3e-12	47.7	0.1	3e-06	28.0	0.0	3.3	3	0	0	3	3	2	2	AAA	domain
AAA_33	PF13671.1	gi|146304983|ref|YP_001192299.1|	-	3.5e-12	46.3	0.0	2.7e-05	24.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_5	PF07728.9	gi|146304983|ref|YP_001192299.1|	-	4.4e-12	45.9	0.7	8.8e-05	22.2	0.0	4.4	2	2	0	2	2	2	2	AAA	domain	(dynein-related	subfamily)
AAA_14	PF13173.1	gi|146304983|ref|YP_001192299.1|	-	3.5e-11	43.0	0.0	2.9e-05	23.9	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
TIP49	PF06068.8	gi|146304983|ref|YP_001192299.1|	-	1e-10	40.8	0.0	0.00036	19.3	0.0	2.7	2	0	0	2	2	2	2	TIP49	C-terminus
Zeta_toxin	PF06414.7	gi|146304983|ref|YP_001192299.1|	-	2.3e-10	39.8	0.0	9.6e-05	21.5	0.0	2.5	2	0	0	2	2	2	2	Zeta	toxin
IstB_IS21	PF01695.12	gi|146304983|ref|YP_001192299.1|	-	1.3e-09	37.6	0.2	0.0022	17.4	0.0	2.7	2	0	0	2	2	2	2	IstB-like	ATP	binding	protein
AAA_28	PF13521.1	gi|146304983|ref|YP_001192299.1|	-	1.9e-08	34.4	0.0	0.0056	16.6	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
AAA_18	PF13238.1	gi|146304983|ref|YP_001192299.1|	-	3.7e-08	33.7	0.1	0.0014	18.9	0.0	2.9	2	0	0	2	2	2	2	AAA	domain
AAA_25	PF13481.1	gi|146304983|ref|YP_001192299.1|	-	1.3e-07	31.2	5.4	0.0036	16.7	0.1	4.1	2	2	2	4	4	3	2	AAA	domain
RNA_helicase	PF00910.17	gi|146304983|ref|YP_001192299.1|	-	1.5e-07	31.5	0.0	0.0037	17.4	0.0	2.9	2	0	0	2	2	2	2	RNA	helicase
Mg_chelatase	PF01078.16	gi|146304983|ref|YP_001192299.1|	-	2.4e-07	30.1	0.7	0.0075	15.4	0.1	2.4	2	0	0	2	2	2	2	Magnesium	chelatase,	subunit	ChlI
NACHT	PF05729.7	gi|146304983|ref|YP_001192299.1|	-	1.1e-06	28.4	0.6	0.14	11.7	0.0	3.9	4	0	0	4	4	4	2	NACHT	domain
Arch_ATPase	PF01637.13	gi|146304983|ref|YP_001192299.1|	-	1.7e-06	27.8	0.0	0.013	15.1	0.0	4.0	2	2	2	4	4	4	1	Archaeal	ATPase
AAA_19	PF13245.1	gi|146304983|ref|YP_001192299.1|	-	1.8e-06	27.6	1.8	0.021	14.5	0.1	3.1	2	0	0	2	2	2	2	Part	of	AAA	domain
AAA_3	PF07726.6	gi|146304983|ref|YP_001192299.1|	-	2.1e-06	27.3	0.0	0.062	12.9	0.0	2.8	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Sigma54_activ_2	PF14532.1	gi|146304983|ref|YP_001192299.1|	-	4.4e-06	26.7	0.0	0.052	13.6	0.0	2.5	2	0	0	2	2	2	2	Sigma-54	interaction	domain
AAA_24	PF13479.1	gi|146304983|ref|YP_001192299.1|	-	7.5e-06	25.6	2.0	0.053	13.0	0.0	2.9	3	0	0	3	3	2	2	AAA	domain
Sigma54_activat	PF00158.21	gi|146304983|ref|YP_001192299.1|	-	1.3e-05	24.7	0.0	0.38	10.2	0.0	3.4	3	1	0	3	3	2	2	Sigma-54	interaction	domain
Vps4_C	PF09336.5	gi|146304983|ref|YP_001192299.1|	-	1.6e-05	24.7	0.2	0.018	14.9	0.0	2.8	2	0	0	2	2	2	1	Vps4	C	terminal	oligomerisation	domain
Bac_DnaA	PF00308.13	gi|146304983|ref|YP_001192299.1|	-	3.6e-05	23.5	0.0	0.015	14.9	0.0	3.0	2	2	0	2	2	2	1	Bacterial	dnaA	protein
DUF815	PF05673.8	gi|146304983|ref|YP_001192299.1|	-	4.3e-05	22.5	0.0	0.13	11.1	0.0	2.5	2	0	0	2	2	2	2	Protein	of	unknown	function	(DUF815)
ABC_tran	PF00005.22	gi|146304983|ref|YP_001192299.1|	-	6.1e-05	23.3	0.1	0.72	10.1	0.0	3.0	3	0	0	3	3	2	2	ABC	transporter
KaiC	PF06745.8	gi|146304983|ref|YP_001192299.1|	-	6.7e-05	22.1	0.5	0.19	10.7	0.0	3.6	2	2	0	3	3	3	1	KaiC
Molydop_binding	PF01568.16	gi|146304983|ref|YP_001192299.1|	-	0.00012	21.8	0.0	0.0012	18.6	0.0	2.5	2	1	0	3	3	2	1	Molydopterin	dinucleotide	binding	domain
SKI	PF01202.17	gi|146304983|ref|YP_001192299.1|	-	0.00015	21.6	0.1	0.41	10.4	0.0	3.1	3	0	0	3	3	3	1	Shikimate	kinase
UPF0079	PF02367.12	gi|146304983|ref|YP_001192299.1|	-	0.00017	21.1	0.0	0.48	10.0	0.0	2.6	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
Parvo_NS1	PF01057.12	gi|146304983|ref|YP_001192299.1|	-	0.00021	20.2	0.1	0.52	9.1	0.0	2.3	2	0	0	2	2	2	2	Parvovirus	non-structural	protein	NS1
PhoH	PF02562.11	gi|146304983|ref|YP_001192299.1|	-	0.00037	19.8	0.6	0.17	11.1	0.1	2.6	2	0	0	2	2	2	1	PhoH-like	protein
AFG1_ATPase	PF03969.11	gi|146304983|ref|YP_001192299.1|	-	0.0011	17.8	0.0	1.2	7.9	0.0	3.0	3	0	0	3	3	3	1	AFG1-like	ATPase
NTPase_1	PF03266.10	gi|146304983|ref|YP_001192299.1|	-	0.0015	18.2	4.1	4.1	7.0	0.0	4.5	3	2	1	4	4	4	0	NTPase
NB-ARC	PF00931.17	gi|146304983|ref|YP_001192299.1|	-	0.0016	17.3	0.3	1.1	8.1	0.0	2.7	3	0	0	3	3	3	1	NB-ARC	domain
AAA_11	PF13086.1	gi|146304983|ref|YP_001192299.1|	-	0.0019	17.8	0.0	0.87	9.1	0.0	2.5	2	0	0	2	2	2	1	AAA	domain
AAA_10	PF12846.2	gi|146304983|ref|YP_001192299.1|	-	0.0019	17.6	1.0	2.9	7.2	0.0	3.3	2	2	0	2	2	2	0	AAA-like	domain
PduV-EutP	PF10662.4	gi|146304983|ref|YP_001192299.1|	-	0.0062	16.0	0.3	14	5.1	0.0	3.3	3	0	0	3	3	3	0	Ethanolamine	utilisation	-	propanediol	utilisation
ATP-synt_ab	PF00006.20	gi|146304983|ref|YP_001192299.1|	-	0.009	15.5	0.0	0.89	9.0	0.0	2.6	2	1	0	2	2	2	1	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
IPT	PF01745.11	gi|146304983|ref|YP_001192299.1|	-	0.0094	15.1	0.2	1.1	8.3	0.1	2.5	2	0	0	2	2	2	1	Isopentenyl	transferase
DUF2075	PF09848.4	gi|146304983|ref|YP_001192299.1|	-	0.014	14.3	0.1	2.9	6.7	0.0	2.5	2	1	0	2	2	2	0	Uncharacterized	conserved	protein	(DUF2075)
KTI12	PF08433.5	gi|146304983|ref|YP_001192299.1|	-	0.02	14.1	0.0	5.1	6.2	0.0	2.5	2	0	0	2	2	2	0	Chromatin	associated	protein	KTI12
AAA_29	PF13555.1	gi|146304983|ref|YP_001192299.1|	-	0.022	14.3	0.0	6	6.4	0.0	2.7	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
T2SE	PF00437.15	gi|146304983|ref|YP_001192299.1|	-	0.029	13.2	0.0	7	5.4	0.0	2.5	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ResIII	PF04851.10	gi|146304983|ref|YP_001192299.1|	-	0.029	14.1	0.0	3.3	7.5	0.0	2.6	2	0	0	2	2	2	0	Type	III	restriction	enzyme,	res	subunit
UFD1	PF03152.9	gi|146304983|ref|YP_001192299.1|	-	0.032	13.3	0.1	0.11	11.6	0.1	1.8	2	0	0	2	2	1	0	Ubiquitin	fusion	degradation	protein	UFD1
Viral_helicase1	PF01443.13	gi|146304983|ref|YP_001192299.1|	-	0.037	13.5	0.0	1.6	8.1	0.0	2.3	2	0	0	2	2	2	0	Viral	(Superfamily	1)	RNA	helicase
Guanylate_kin	PF00625.16	gi|146304983|ref|YP_001192299.1|	-	0.039	13.4	0.1	12	5.3	0.0	3.7	2	2	2	4	4	4	0	Guanylate	kinase
MMR_HSR1	PF01926.18	gi|146304983|ref|YP_001192299.1|	-	0.055	13.4	0.0	3	7.8	0.0	2.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_30	PF13604.1	gi|146304983|ref|YP_001192299.1|	-	0.065	12.8	0.0	5.3	6.5	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
AAA_23	PF13476.1	gi|146304983|ref|YP_001192299.1|	-	0.15	12.3	0.1	17	5.6	0.0	2.8	3	0	0	3	3	2	0	AAA	domain
PhosphMutase	PF10143.4	gi|146304984|ref|YP_001192300.1|	-	6.1e-59	198.5	0.0	1.8e-58	196.9	0.0	1.7	2	0	0	2	2	2	1	2,3-bisphosphoglycerate-independent	phosphoglycerate	mutase
Metalloenzyme	PF01676.13	gi|146304984|ref|YP_001192300.1|	-	1.4e-43	149.1	0.0	1.6e-43	148.9	0.0	1.0	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Phosphodiest	PF01663.17	gi|146304984|ref|YP_001192300.1|	-	0.012	14.9	0.1	0.021	14.1	0.1	1.3	1	0	0	1	1	1	0	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
TPP_enzyme_M	PF00205.17	gi|146304984|ref|YP_001192300.1|	-	0.087	12.5	0.1	0.24	11.1	0.1	1.7	1	0	0	1	1	1	0	Thiamine	pyrophosphate	enzyme,	central	domain
DUF359	PF04019.7	gi|146304985|ref|YP_001192301.1|	-	4.6e-34	116.4	0.0	5.8e-34	116.0	0.0	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF359)
Spt4	PF06093.8	gi|146304986|ref|YP_001192302.1|	-	1.1e-12	47.6	0.4	1.5e-12	47.2	0.3	1.2	1	0	0	1	1	1	1	Spt4/RpoE2	zinc	finger
zinc_ribbon_2	PF13240.1	gi|146304986|ref|YP_001192302.1|	-	0.022	14.2	1.6	0.031	13.7	1.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	domain
zf-C3HC4_3	PF13920.1	gi|146304986|ref|YP_001192302.1|	-	0.032	13.9	2.0	0.041	13.5	1.4	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DZR	PF12773.2	gi|146304986|ref|YP_001192302.1|	-	0.039	13.7	1.5	0.054	13.3	1.1	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
DnaJ_CXXCXGXG	PF00684.14	gi|146304986|ref|YP_001192302.1|	-	0.076	13.0	1.8	0.19	11.8	1.3	1.5	1	1	0	1	1	1	0	DnaJ	central	domain
NMD3	PF04981.8	gi|146304986|ref|YP_001192302.1|	-	0.082	12.0	0.3	0.2	10.7	0.2	1.6	1	1	0	1	1	1	0	NMD3	family
RecR	PF02132.10	gi|146304986|ref|YP_001192302.1|	-	0.093	12.1	3.7	0.18	11.2	1.9	2.0	2	1	0	2	2	2	0	RecR	protein
UPF0547	PF10571.4	gi|146304986|ref|YP_001192302.1|	-	0.1	12.3	2.3	0.16	11.6	1.6	1.4	1	0	0	1	1	1	0	Uncharacterised	protein	family	UPF0547
zf-P11	PF03854.9	gi|146304986|ref|YP_001192302.1|	-	0.11	11.9	1.2	0.19	11.2	0.8	1.3	1	0	0	1	1	1	0	P-11	zinc	finger
zf-C4H2	PF10146.4	gi|146304986|ref|YP_001192302.1|	-	0.2	11.6	0.7	0.31	11.0	0.5	1.2	1	0	0	1	1	1	0	Zinc	finger-containing	protein
zf-C3HC4_2	PF13923.1	gi|146304986|ref|YP_001192302.1|	-	0.36	10.8	3.2	0.55	10.3	2.2	1.3	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
Zn-ribbon_8	PF09723.5	gi|146304986|ref|YP_001192302.1|	-	1.6	8.7	3.8	12	5.9	0.2	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zf-Sec23_Sec24	PF04810.10	gi|146304986|ref|YP_001192302.1|	-	3.7	7.1	5.2	16	5.1	0.2	2.1	1	1	1	2	2	2	0	Sec23/Sec24	zinc	finger
S1	PF00575.18	gi|146304987|ref|YP_001192303.1|	-	1e-14	54.3	0.2	1.7e-14	53.6	0.1	1.4	1	0	0	1	1	1	1	S1	RNA	binding	domain
SHS2_Rpb7-N	PF03876.12	gi|146304987|ref|YP_001192303.1|	-	1.2e-14	54.1	0.0	2e-14	53.4	0.0	1.4	1	0	0	1	1	1	1	SHS2	domain	found	in	N	terminus	of	Rpb7p/Rpc25p/MJ0397
RNA_pol_Rbc25	PF08292.7	gi|146304987|ref|YP_001192303.1|	-	0.00083	19.5	0.0	0.0014	18.7	0.0	1.5	1	0	0	1	1	1	1	RNA	polymerase	III	subunit	Rpc25
PIN	PF01850.16	gi|146304988|ref|YP_001192304.1|	-	6.6e-10	39.3	0.7	9.1e-10	38.9	0.5	1.2	1	0	0	1	1	1	1	PIN	domain
Fcf1	PF04900.7	gi|146304988|ref|YP_001192304.1|	-	1.5e-06	28.2	0.0	4.1e-06	26.8	0.0	1.6	1	1	0	1	1	1	1	Fcf1
PIN_4	PF13638.1	gi|146304988|ref|YP_001192304.1|	-	7.2e-06	26.1	0.1	0.00087	19.3	0.1	2.1	1	1	0	1	1	1	1	PIN	domain
OAR	PF03826.12	gi|146304988|ref|YP_001192304.1|	-	0.14	11.6	0.1	0.23	11.0	0.1	1.4	1	0	0	1	1	1	0	OAR	domain
GTP_EFTU	PF00009.22	gi|146304989|ref|YP_001192305.1|	-	1.8e-40	138.4	0.0	3e-40	137.6	0.0	1.4	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
eIF2_C	PF09173.6	gi|146304989|ref|YP_001192305.1|	-	5.2e-28	96.9	0.3	1.1e-27	95.8	0.2	1.6	1	0	0	1	1	1	1	Initiation	factor	eIF2	gamma,	C	terminal
GTP_EFTU_D2	PF03144.20	gi|146304989|ref|YP_001192305.1|	-	8.5e-06	25.8	0.0	0.00023	21.1	0.0	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
PduV-EutP	PF10662.4	gi|146304989|ref|YP_001192305.1|	-	0.00052	19.5	0.4	0.4	10.1	0.0	2.5	2	0	0	2	2	2	2	Ethanolamine	utilisation	-	propanediol	utilisation
MMR_HSR1	PF01926.18	gi|146304989|ref|YP_001192305.1|	-	0.00074	19.4	0.0	0.0014	18.5	0.0	1.5	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
Dynamin_N	PF00350.18	gi|146304989|ref|YP_001192305.1|	-	0.07	12.9	0.1	0.18	11.6	0.1	2.0	1	1	0	1	1	1	0	Dynamin	family
FeoB_N	PF02421.13	gi|146304989|ref|YP_001192305.1|	-	0.11	11.7	0.8	2.9	7.1	0.0	2.3	2	0	0	2	2	2	0	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|146304989|ref|YP_001192305.1|	-	0.13	12.7	0.0	0.4	11.1	0.0	1.8	1	0	0	1	1	1	0	Miro-like	protein
Ribosomal_S6e	PF01092.14	gi|146304990|ref|YP_001192306.1|	-	4.6e-22	77.9	0.1	1.1e-21	76.7	0.1	1.6	1	0	0	1	1	1	1	Ribosomal	protein	S6e
Molydop_binding	PF01568.16	gi|146304990|ref|YP_001192306.1|	-	0.018	14.8	0.0	0.028	14.2	0.0	1.3	1	0	0	1	1	1	0	Molydopterin	dinucleotide	binding	domain
CbiX	PF01903.12	gi|146304991|ref|YP_001192307.1|	-	9.5e-26	89.9	0.0	1.1e-25	89.7	0.0	1.1	1	0	0	1	1	1	1	CbiX
CbiK	PF06180.6	gi|146304991|ref|YP_001192307.1|	-	6.1e-06	25.5	0.1	6.6e-06	25.4	0.0	1.1	1	0	0	1	1	1	1	Cobalt	chelatase	(CbiK)
G6PD_N	PF00479.17	gi|146304991|ref|YP_001192307.1|	-	0.011	16.0	0.0	0.014	15.6	0.0	1.2	1	0	0	1	1	1	0	Glucose-6-phosphate	dehydrogenase,	NAD	binding	domain
RVT_3	PF13456.1	gi|146304992|ref|YP_001192308.1|	-	6.2e-23	80.3	0.0	8.4e-23	79.9	0.0	1.2	1	0	0	1	1	1	1	Reverse	transcriptase-like
RNase_H	PF00075.19	gi|146304992|ref|YP_001192308.1|	-	1.5e-07	31.8	0.0	1.7e-07	31.6	0.0	1.1	1	0	0	1	1	1	1	RNase	H
Ribosomal_S13_N	PF08069.7	gi|146304993|ref|YP_001192309.1|	-	9.5e-25	86.2	0.6	2.4e-24	84.9	0.1	1.9	2	0	0	2	2	2	1	Ribosomal	S13/S15	N-terminal	domain
Ribosomal_S15	PF00312.17	gi|146304993|ref|YP_001192309.1|	-	2.8e-17	62.2	0.1	4.1e-17	61.7	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	S15
DUF2408	PF10303.4	gi|146304993|ref|YP_001192309.1|	-	0.018	15.1	0.0	0.029	14.4	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2408)
RecX	PF02631.11	gi|146304993|ref|YP_001192309.1|	-	0.036	14.2	0.1	7.7	6.7	0.0	2.2	2	0	0	2	2	2	0	RecX	family
Myb_DNA-bind_4	PF13837.1	gi|146304993|ref|YP_001192309.1|	-	0.1	12.7	0.2	0.45	10.6	0.0	2.0	2	0	0	2	2	2	0	Myb/SANT-like	DNA-binding	domain
Meth_synt_2	PF01717.13	gi|146304994|ref|YP_001192310.1|	-	3.8e-88	295.5	0.0	4.3e-88	295.3	0.0	1.0	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
Meth_synt_1	PF08267.7	gi|146304994|ref|YP_001192310.1|	-	5.7e-25	88.2	0.4	5.7e-20	71.8	0.4	2.0	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	N-terminal	domain
URO-D	PF01208.12	gi|146304994|ref|YP_001192310.1|	-	0.0013	17.7	0.0	0.0018	17.2	0.0	1.2	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
EF-hand_7	PF13499.1	gi|146304994|ref|YP_001192310.1|	-	0.014	15.5	0.0	0.033	14.3	0.0	1.7	1	0	0	1	1	1	0	EF-hand	domain	pair
Meth_synt_1	PF08267.7	gi|146304995|ref|YP_001192311.1|	-	2.6e-43	148.4	0.5	6.7e-42	143.8	0.4	2.0	1	1	0	1	1	1	1	Cobalamin-independent	synthase,	N-terminal	domain
Meth_synt_2	PF01717.13	gi|146304995|ref|YP_001192311.1|	-	8.8e-11	41.3	0.0	1.3e-10	40.8	0.0	1.2	1	0	0	1	1	1	1	Cobalamin-independent	synthase,	Catalytic	domain
PCNA_N	PF00705.13	gi|146304996|ref|YP_001192312.1|	-	1.8e-15	56.5	0.1	5.1e-15	55.1	0.0	1.7	2	0	0	2	2	2	1	Proliferating	cell	nuclear	antigen,	N-terminal	domain
PCNA_C	PF02747.10	gi|146304996|ref|YP_001192312.1|	-	3.8e-10	39.7	3.2	3.2e-08	33.5	0.1	2.6	2	2	0	2	2	2	2	Proliferating	cell	nuclear	antigen,	C-terminal	domain
Rad9	PF04139.8	gi|146304996|ref|YP_001192312.1|	-	2e-07	30.4	0.4	3.3e-07	29.6	0.3	1.5	1	1	0	1	1	1	1	Rad9
Rad1	PF02144.11	gi|146304996|ref|YP_001192312.1|	-	0.00014	20.7	1.5	0.11	11.2	0.1	2.1	2	0	0	2	2	2	2	Repair	protein	Rad1/Rec1/Rad17
DNA_pol3_beta_3	PF02768.10	gi|146304996|ref|YP_001192312.1|	-	0.0009	18.8	3.4	0.49	9.9	0.0	2.6	3	1	0	3	3	3	2	DNA	polymerase	III	beta	subunit,	C-terminal	domain
AIRS_C	PF02769.17	gi|146304996|ref|YP_001192312.1|	-	0.0037	17.2	0.2	0.015	15.2	0.1	2.0	2	1	0	2	2	2	1	AIR	synthase	related	protein,	C-terminal	domain
LSM	PF01423.17	gi|146304997|ref|YP_001192313.1|	-	5.6e-22	77.0	0.4	6.2e-22	76.9	0.2	1.0	1	0	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|146304997|ref|YP_001192313.1|	-	0.0022	17.8	0.1	0.003	17.4	0.1	1.2	1	0	0	1	1	1	1	Ataxin	2	SM	domain
Ribosomal_L37e	PF01907.14	gi|146304998|ref|YP_001192314.1|	-	3.8e-25	87.4	12.0	4.2e-25	87.3	8.3	1.0	1	0	0	1	1	1	1	Ribosomal	protein	L37e
Stc1	PF12898.2	gi|146304998|ref|YP_001192314.1|	-	0.0017	18.3	0.4	0.0018	18.2	0.3	1.1	1	0	0	1	1	1	1	Stc1	domain
IGFL	PF14653.1	gi|146304998|ref|YP_001192314.1|	-	0.0018	18.2	1.2	0.0019	18.2	0.9	1.2	1	0	0	1	1	1	1	Insulin	growth	factor-like	family
GCC2_GCC3	PF07699.8	gi|146304998|ref|YP_001192314.1|	-	0.0034	16.9	2.7	0.0043	16.6	1.9	1.3	1	0	0	1	1	1	1	GCC2	and	GCC3
DZR	PF12773.2	gi|146304998|ref|YP_001192314.1|	-	0.027	14.3	1.4	0.034	13.9	0.9	1.2	1	0	0	1	1	1	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.1	gi|146304998|ref|YP_001192314.1|	-	0.13	11.4	3.4	0.22	10.7	2.4	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
HypA	PF01155.14	gi|146304998|ref|YP_001192314.1|	-	0.18	11.5	0.5	0.19	11.4	0.3	1.2	1	0	0	1	1	1	0	Hydrogenase	expression/synthesis	hypA	family
OrfB_Zn_ribbon	PF07282.6	gi|146304998|ref|YP_001192314.1|	-	0.22	11.2	2.3	0.27	10.9	1.6	1.4	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zinc_ribbon_4	PF13717.1	gi|146304998|ref|YP_001192314.1|	-	0.24	11.1	4.1	1.2	8.8	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
Zn-ribbon_8	PF09723.5	gi|146304998|ref|YP_001192314.1|	-	0.24	11.3	2.1	5.3	7.0	0.1	2.1	1	1	1	2	2	2	0	Zinc	ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146304998|ref|YP_001192314.1|	-	0.3	10.7	4.2	1.3	8.6	0.6	2.2	2	0	0	2	2	2	0	zinc-ribbon	domain
zf-HIT	PF04438.11	gi|146304998|ref|YP_001192314.1|	-	0.38	10.4	4.3	3.6	7.3	0.4	2.2	2	0	0	2	2	2	0	HIT	zinc	finger
zf-C3HC4	PF00097.20	gi|146304998|ref|YP_001192314.1|	-	1.2	8.8	4.1	1.7	8.3	2.8	1.2	1	0	0	1	1	1	0	Zinc	finger,	C3HC4	type	(RING	finger)
DNA_RNApol_7kD	PF03604.8	gi|146304998|ref|YP_001192314.1|	-	1.8	8.0	8.5	0.64	9.5	1.1	2.2	2	0	0	2	2	2	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.2	gi|146304998|ref|YP_001192314.1|	-	3.3	7.6	8.0	5.2	6.9	4.5	1.8	1	1	1	2	2	2	0	Transposase	zinc-ribbon	domain
Spermine_synth	PF01564.12	gi|146304999|ref|YP_001192315.1|	-	1.6e-63	213.9	0.0	2e-63	213.6	0.0	1.0	1	0	0	1	1	1	1	Spermine/spermidine	synthase
Methyltransf_26	PF13659.1	gi|146304999|ref|YP_001192315.1|	-	2.3e-06	27.6	0.0	3.5e-06	27.0	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_18	PF12847.2	gi|146304999|ref|YP_001192315.1|	-	3.2e-05	24.4	0.0	5.5e-05	23.7	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.1	gi|146304999|ref|YP_001192315.1|	-	3.3e-05	24.1	0.0	8.9e-05	22.8	0.0	1.7	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_12	PF08242.7	gi|146304999|ref|YP_001192315.1|	-	6.9e-05	23.2	0.0	0.00013	22.3	0.0	1.5	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.1	gi|146304999|ref|YP_001192315.1|	-	0.0013	18.3	0.0	0.0019	17.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
DUF43	PF01861.11	gi|146304999|ref|YP_001192315.1|	-	0.0039	16.1	0.1	0.0059	15.6	0.1	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	DUF43
Methyltransf_30	PF05430.6	gi|146304999|ref|YP_001192315.1|	-	0.0052	16.4	0.0	0.0094	15.6	0.0	1.4	1	0	0	1	1	1	1	S-adenosyl-L-methionine-dependent	methyltransferase
MTS	PF05175.9	gi|146304999|ref|YP_001192315.1|	-	0.0057	16.0	0.0	0.0083	15.5	0.0	1.2	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_5	PF01795.14	gi|146304999|ref|YP_001192315.1|	-	0.016	14.5	0.0	0.024	13.9	0.0	1.2	1	0	0	1	1	1	0	MraW	methylase	family
Methyltransf_2	PF00891.13	gi|146304999|ref|YP_001192315.1|	-	0.032	13.4	0.0	0.051	12.7	0.0	1.4	1	0	0	1	1	1	0	O-methyltransferase
Methyltransf_11	PF08241.7	gi|146304999|ref|YP_001192315.1|	-	0.071	13.6	0.0	0.14	12.6	0.0	1.6	1	0	0	1	1	1	0	Methyltransferase	domain
AAA_31	PF13614.1	gi|146304999|ref|YP_001192315.1|	-	0.081	12.8	0.0	0.98	9.3	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Beta-Casp	PF10996.3	gi|146305000|ref|YP_001192316.1|	-	4.8e-33	113.7	0.0	1.7e-32	111.9	0.0	2.0	2	0	0	2	2	2	1	Beta-Casp	domain
Lactamase_B	PF00753.22	gi|146305000|ref|YP_001192316.1|	-	5.1e-23	81.7	0.5	9.5e-23	80.8	0.3	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
RMMBL	PF07521.7	gi|146305000|ref|YP_001192316.1|	-	7.7e-13	48.0	0.6	6.1e-12	45.1	0.0	2.9	4	0	0	4	4	4	1	RNA-metabolising	metallo-beta-lactamase
Lactamase_B_2	PF12706.2	gi|146305000|ref|YP_001192316.1|	-	2.8e-11	43.3	0.0	9.2e-11	41.6	0.0	1.8	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_2	PF07650.12	gi|146305000|ref|YP_001192316.1|	-	0.0029	17.1	0.2	0.0029	17.1	0.1	3.5	2	1	1	3	3	3	1	KH	domain
Lactamase_B_3	PF13483.1	gi|146305000|ref|YP_001192316.1|	-	0.0037	16.9	0.0	0.013	15.1	0.0	1.9	2	0	0	2	2	2	1	Beta-lactamase	superfamily	domain
KH_4	PF13083.1	gi|146305000|ref|YP_001192316.1|	-	1.3	8.6	5.3	0.57	9.8	0.2	2.8	2	1	1	3	3	3	0	KH	domain
Fe-ADH_2	PF13685.1	gi|146305001|ref|YP_001192317.1|	-	5.9e-66	222.3	0.0	7.3e-66	222.0	0.0	1.1	1	0	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
Fe-ADH	PF00465.14	gi|146305001|ref|YP_001192317.1|	-	6.6e-27	94.0	0.1	3.3e-26	91.7	0.1	1.8	1	1	0	1	1	1	1	Iron-containing	alcohol	dehydrogenase
DHQ_synthase	PF01761.15	gi|146305001|ref|YP_001192317.1|	-	2.5e-09	36.4	0.2	5.6e-08	32.0	0.1	2.8	1	1	1	2	2	2	1	3-dehydroquinate	synthase
FliE	PF02049.13	gi|146305001|ref|YP_001192317.1|	-	0.13	12.3	0.0	0.21	11.6	0.0	1.3	1	0	0	1	1	1	0	Flagellar	hook-basal	body	complex	protein	FliE
FKBP_C	PF00254.23	gi|146305002|ref|YP_001192318.1|	-	3.1e-15	55.9	0.3	5.8e-15	55.0	0.2	1.5	1	0	0	1	1	1	1	FKBP-type	peptidyl-prolyl	cis-trans	isomerase
Sec63	PF02889.11	gi|146305002|ref|YP_001192318.1|	-	0.03	13.5	0.0	0.048	12.8	0.0	1.2	1	0	0	1	1	1	0	Sec63	Brl	domain
AdoHcyase	PF05221.12	gi|146305003|ref|YP_001192319.1|	-	1.1e-68	231.1	0.1	1.3e-68	230.8	0.0	1.0	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase
AdoHcyase_NAD	PF00670.16	gi|146305003|ref|YP_001192319.1|	-	7.8e-54	181.8	0.5	1.3e-53	181.1	0.3	1.4	1	0	0	1	1	1	1	S-adenosyl-L-homocysteine	hydrolase,	NAD	binding	domain
2-Hacid_dh_C	PF02826.14	gi|146305003|ref|YP_001192319.1|	-	1.5e-07	30.7	0.6	3.2e-07	29.6	0.4	1.5	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.7	gi|146305003|ref|YP_001192319.1|	-	3.2e-07	29.8	0.1	6.7e-07	28.8	0.1	1.5	1	0	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	catalytic	domain
TrkA_N	PF02254.13	gi|146305003|ref|YP_001192319.1|	-	8.6e-05	22.5	0.1	0.00021	21.2	0.0	1.6	1	0	0	1	1	1	1	TrkA-N	domain
F420_oxidored	PF03807.12	gi|146305003|ref|YP_001192319.1|	-	0.052	13.9	0.7	0.13	12.7	0.2	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ABC_tran	PF00005.22	gi|146305004|ref|YP_001192320.1|	-	3.1e-41	140.8	0.0	4.1e-19	69.2	0.0	2.6	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.1	gi|146305004|ref|YP_001192320.1|	-	3e-14	53.6	8.6	5.1e-07	29.9	1.6	4.2	2	2	0	3	3	3	3	AAA	domain
RLI	PF04068.10	gi|146305004|ref|YP_001192320.1|	-	3.8e-13	48.7	1.6	8.9e-13	47.5	1.1	1.7	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
SMC_N	PF02463.14	gi|146305004|ref|YP_001192320.1|	-	2.9e-11	43.0	5.0	7.4e-05	22.0	0.6	3.8	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.1	gi|146305004|ref|YP_001192320.1|	-	3.2e-09	36.3	0.3	0.008	15.2	0.5	4.2	3	1	1	4	4	4	1	AAA	ATPase	domain
Fer4	PF00037.22	gi|146305004|ref|YP_001192320.1|	-	6.8e-07	28.6	4.9	6.8e-07	28.6	3.4	2.8	3	0	0	3	3	2	1	4Fe-4S	binding	domain
UPF0079	PF02367.12	gi|146305004|ref|YP_001192320.1|	-	2e-06	27.4	0.4	0.013	15.1	0.0	2.4	2	0	0	2	2	2	2	Uncharacterised	P-loop	hydrolase	UPF0079
AAA	PF00004.24	gi|146305004|ref|YP_001192320.1|	-	2.4e-06	27.7	0.0	0.3	11.2	0.0	3.5	3	0	0	3	3	3	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Fer4_21	PF14697.1	gi|146305004|ref|YP_001192320.1|	-	7.9e-06	25.6	9.0	1.3e-05	24.9	6.2	1.4	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
DUF258	PF03193.11	gi|146305004|ref|YP_001192320.1|	-	1.3e-05	24.3	0.7	0.24	10.5	0.0	3.4	3	0	0	3	3	3	2	Protein	of	unknown	function,	DUF258
Fer4_6	PF12837.2	gi|146305004|ref|YP_001192320.1|	-	2.5e-05	23.9	14.7	0.00052	19.7	2.9	2.4	2	0	0	2	2	2	2	4Fe-4S	binding	domain
AAA_17	PF13207.1	gi|146305004|ref|YP_001192320.1|	-	2.9e-05	24.8	5.7	0.19	12.5	1.2	4.0	3	1	0	3	3	3	2	AAA	domain
AAA_16	PF13191.1	gi|146305004|ref|YP_001192320.1|	-	0.0001	22.3	0.4	0.014	15.4	0.0	2.7	2	1	0	2	2	2	1	AAA	ATPase	domain
AAA_29	PF13555.1	gi|146305004|ref|YP_001192320.1|	-	0.00013	21.3	1.4	0.48	10.0	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
Miro	PF08477.8	gi|146305004|ref|YP_001192320.1|	-	0.00015	22.2	0.3	0.42	11.1	0.0	2.9	3	0	0	3	3	2	1	Miro-like	protein
AAA_18	PF13238.1	gi|146305004|ref|YP_001192320.1|	-	0.00015	22.0	2.0	0.16	12.3	0.0	3.3	3	1	0	3	3	2	1	AAA	domain
AAA_25	PF13481.1	gi|146305004|ref|YP_001192320.1|	-	0.00016	21.1	0.4	0.25	10.7	0.0	3.3	4	0	0	4	4	3	1	AAA	domain
Fer4_7	PF12838.2	gi|146305004|ref|YP_001192320.1|	-	0.00017	21.8	8.9	0.00033	20.9	6.1	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.2	gi|146305004|ref|YP_001192320.1|	-	0.00024	20.8	3.6	0.00024	20.8	2.5	2.4	2	0	0	2	2	2	1	4Fe-4S	binding	domain
MobB	PF03205.9	gi|146305004|ref|YP_001192320.1|	-	0.00026	20.6	0.8	0.02	14.6	0.0	2.6	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_23	PF13476.1	gi|146305004|ref|YP_001192320.1|	-	0.00035	20.9	10.4	0.056	13.7	0.2	2.6	2	1	0	2	2	2	2	AAA	domain
SbcCD_C	PF13558.1	gi|146305004|ref|YP_001192320.1|	-	0.00038	20.3	0.0	1.8	8.5	0.0	3.0	2	1	0	2	2	2	2	Putative	exonuclease	SbcCD,	C	subunit
MMR_HSR1	PF01926.18	gi|146305004|ref|YP_001192320.1|	-	0.00084	19.2	0.3	0.53	10.2	0.1	2.9	2	1	0	2	2	2	1	50S	ribosome-binding	GTPase
Fer4_10	PF13237.1	gi|146305004|ref|YP_001192320.1|	-	0.0013	18.4	11.8	0.0028	17.4	1.8	2.2	1	1	1	2	2	2	2	4Fe-4S	dicluster	domain
RNA_helicase	PF00910.17	gi|146305004|ref|YP_001192320.1|	-	0.0019	18.3	0.1	1.6	8.9	0.0	2.8	3	0	0	3	3	2	1	RNA	helicase
NACHT	PF05729.7	gi|146305004|ref|YP_001192320.1|	-	0.002	17.8	2.1	0.37	10.4	0.0	2.7	2	1	0	2	2	2	1	NACHT	domain
KAP_NTPase	PF07693.9	gi|146305004|ref|YP_001192320.1|	-	0.002	17.1	0.0	0.37	9.7	0.0	2.2	2	0	0	2	2	2	1	KAP	family	P-loop	domain
AAA_14	PF13173.1	gi|146305004|ref|YP_001192320.1|	-	0.0034	17.2	3.2	1.8	8.4	0.1	3.3	3	1	0	3	3	2	2	AAA	domain
AAA_5	PF07728.9	gi|146305004|ref|YP_001192320.1|	-	0.0049	16.5	0.9	14	5.4	0.0	3.7	3	1	0	3	3	3	0	AAA	domain	(dynein-related	subfamily)
Fer4_16	PF13484.1	gi|146305004|ref|YP_001192320.1|	-	0.0054	17.4	0.4	0.0054	17.4	0.3	2.4	2	0	0	2	2	2	1	4Fe-4S	double	cluster	binding	domain
VirE	PF05272.6	gi|146305004|ref|YP_001192320.1|	-	0.0088	15.5	0.0	1.5	8.2	0.0	2.6	2	0	0	2	2	2	1	Virulence-associated	protein	E
AAA_33	PF13671.1	gi|146305004|ref|YP_001192320.1|	-	0.013	15.3	0.6	1.4	8.8	0.0	3.1	4	0	0	4	4	3	0	AAA	domain
SRP54	PF00448.17	gi|146305004|ref|YP_001192320.1|	-	0.021	14.2	1.1	2.9	7.3	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_22	PF13401.1	gi|146305004|ref|YP_001192320.1|	-	0.023	14.8	2.7	1.4	9.0	0.0	3.2	2	2	0	2	2	2	0	AAA	domain
PRK	PF00485.13	gi|146305004|ref|YP_001192320.1|	-	0.026	14.0	0.1	8.9	5.8	0.0	2.5	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Pox_A32	PF04665.7	gi|146305004|ref|YP_001192320.1|	-	0.033	13.5	0.2	0.94	8.7	0.1	2.3	2	0	0	2	2	2	0	Poxvirus	A32	protein
Fer4_3	PF12798.2	gi|146305004|ref|YP_001192320.1|	-	0.04	14.4	3.8	0.04	14.4	2.6	2.2	2	0	0	2	2	2	0	4Fe-4S	binding	domain
Fer4_9	PF13187.1	gi|146305004|ref|YP_001192320.1|	-	0.046	14.0	10.1	0.15	12.3	7.0	1.8	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
AAA_32	PF13654.1	gi|146305004|ref|YP_001192320.1|	-	0.05	12.2	0.5	3.3	6.2	0.0	3.0	3	0	0	3	3	3	0	AAA	domain
T2SE	PF00437.15	gi|146305004|ref|YP_001192320.1|	-	0.055	12.3	1.1	2.2	7.1	0.0	2.2	2	0	0	2	2	2	0	Type	II/IV	secretion	system	protein
ArgK	PF03308.11	gi|146305004|ref|YP_001192320.1|	-	0.06	12.1	1.6	4.3	6.0	0.1	2.3	2	0	0	2	2	2	0	ArgK	protein
AAA_30	PF13604.1	gi|146305004|ref|YP_001192320.1|	-	0.065	12.7	0.5	9	5.8	0.0	2.7	3	0	0	3	3	2	0	AAA	domain
PduV-EutP	PF10662.4	gi|146305004|ref|YP_001192320.1|	-	0.068	12.6	0.2	2.2	7.7	0.0	2.8	3	0	0	3	3	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
NB-ARC	PF00931.17	gi|146305004|ref|YP_001192320.1|	-	0.091	11.6	4.7	1.4	7.7	0.1	2.5	2	1	0	2	2	2	0	NB-ARC	domain
Rad17	PF03215.10	gi|146305004|ref|YP_001192320.1|	-	0.096	11.3	0.0	7.9	5.0	0.0	2.4	2	0	0	2	2	2	0	Rad17	cell	cycle	checkpoint	protein
FtsK_SpoIIIE	PF01580.13	gi|146305004|ref|YP_001192320.1|	-	0.1	12.0	1.9	18	4.7	0.0	3.2	3	0	0	3	3	3	0	FtsK/SpoIIIE	family
AAA_28	PF13521.1	gi|146305004|ref|YP_001192320.1|	-	0.11	12.4	0.2	26	4.7	0.0	2.8	2	0	0	2	2	2	0	AAA	domain
Fer4_11	PF13247.1	gi|146305004|ref|YP_001192320.1|	-	0.11	12.3	2.7	0.19	11.6	1.9	1.3	1	0	0	1	1	1	0	4Fe-4S	dicluster	domain
MRP-S26	PF14943.1	gi|146305004|ref|YP_001192320.1|	-	0.12	11.9	0.0	0.21	11.1	0.0	1.3	1	0	0	1	1	1	0	Mitochondrial	ribosome	subunit	S26
NTPase_1	PF03266.10	gi|146305004|ref|YP_001192320.1|	-	0.14	11.8	3.8	2.2	7.9	0.1	3.2	3	0	0	3	3	2	0	NTPase
Dynamin_N	PF00350.18	gi|146305004|ref|YP_001192320.1|	-	0.15	11.9	0.9	11	5.7	0.0	2.7	2	1	1	3	3	2	0	Dynamin	family
AAA_24	PF13479.1	gi|146305004|ref|YP_001192320.1|	-	0.16	11.4	3.4	4.7	6.7	0.1	2.5	2	0	0	2	2	2	0	AAA	domain
Fer4_8	PF13183.1	gi|146305004|ref|YP_001192320.1|	-	0.31	11.0	5.6	0.91	9.5	4.0	1.6	1	1	0	1	1	1	0	4Fe-4S	dicluster	domain
Fer4_4	PF12800.2	gi|146305004|ref|YP_001192320.1|	-	0.34	11.3	12.2	0.16	12.3	2.2	2.3	2	0	0	2	2	2	0	4Fe-4S	binding	domain
cobW	PF02492.14	gi|146305004|ref|YP_001192320.1|	-	0.36	10.2	2.3	12	5.3	0.4	2.4	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
Fer4_17	PF13534.1	gi|146305004|ref|YP_001192320.1|	-	1.4	9.2	7.6	0.9	9.9	1.6	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_18	PF13746.1	gi|146305004|ref|YP_001192320.1|	-	4.9	7.6	10.4	0.62	10.5	2.9	2.4	1	1	0	2	2	2	0	4Fe-4S	dicluster	domain
FBPase_3	PF01950.11	gi|146305005|ref|YP_001192321.1|	-	1.9e-181	602.9	0.0	2.1e-181	602.7	0.0	1.0	1	0	0	1	1	1	1	Fructose-1,6-bisphosphatase
Ribosomal_S17e	PF00833.13	gi|146305006|ref|YP_001192322.1|	-	1.1e-16	60.7	1.3	1.1e-16	60.6	0.9	1.0	1	0	0	1	1	1	1	Ribosomal	S17
Methyltrn_RNA_4	PF09936.4	gi|146305006|ref|YP_001192322.1|	-	0.033	13.6	0.2	0.035	13.5	0.1	1.2	1	0	0	1	1	1	0	SAM-dependent	RNA	methyltransferase
WPP	PF13943.1	gi|146305006|ref|YP_001192322.1|	-	0.043	14.0	0.1	0.052	13.7	0.1	1.2	1	0	0	1	1	1	0	WPP	domain
DUF502	PF04367.8	gi|146305006|ref|YP_001192322.1|	-	0.13	12.0	0.2	0.14	11.9	0.2	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF502)
TFIIE_alpha	PF02002.12	gi|146305006|ref|YP_001192322.1|	-	0.16	11.4	3.6	0.19	11.2	2.5	1.0	1	0	0	1	1	1	0	TFIIE	alpha	subunit
CAP18_C	PF12153.3	gi|146305006|ref|YP_001192322.1|	-	0.22	11.1	1.5	1.2	8.8	0.2	2.3	2	1	0	2	2	2	0	LPS	binding	domain	of	CAP18	(C	terminal)
Urm1	PF09138.6	gi|146305007|ref|YP_001192323.1|	-	5.5e-07	29.6	0.2	6.3e-07	29.4	0.2	1.2	1	0	0	1	1	1	1	Urm1	(Ubiquitin	related	modifier)
ThiS	PF02597.15	gi|146305007|ref|YP_001192323.1|	-	0.0051	17.2	0.0	0.0058	17.0	0.0	1.2	1	0	0	1	1	1	1	ThiS	family
AAA_10	PF12846.2	gi|146305009|ref|YP_001192325.1|	-	1e-25	90.8	0.9	2.5e-25	89.5	0.6	1.6	1	1	0	1	1	1	1	AAA-like	domain
DUF87	PF01935.12	gi|146305009|ref|YP_001192325.1|	-	2.3e-24	86.5	1.9	2.3e-24	86.5	1.3	1.8	2	0	0	2	2	2	1	Domain	of	unknown	function	DUF87
DUF853	PF05872.7	gi|146305009|ref|YP_001192325.1|	-	2.5e-09	36.0	0.2	0.0015	16.9	0.1	2.3	2	1	0	2	2	2	2	Bacterial	protein	of	unknown	function	(DUF853)
AAA_17	PF13207.1	gi|146305009|ref|YP_001192325.1|	-	4.4e-06	27.5	0.4	1.9e-05	25.4	0.3	2.3	1	1	0	1	1	1	1	AAA	domain
TrwB_AAD_bind	PF10412.4	gi|146305009|ref|YP_001192325.1|	-	5.2e-06	25.3	0.0	1.8e-05	23.5	0.0	1.8	2	0	0	2	2	2	1	Type	IV	secretion-system	coupling	protein	DNA-binding	domain
AAA_18	PF13238.1	gi|146305009|ref|YP_001192325.1|	-	9.9e-06	25.8	3.5	4.6e-05	23.7	2.4	2.1	1	1	0	1	1	1	1	AAA	domain
Zot	PF05707.7	gi|146305009|ref|YP_001192325.1|	-	2.9e-05	23.6	0.4	0.034	13.6	0.0	2.7	3	0	0	3	3	3	2	Zonular	occludens	toxin	(Zot)
MobB	PF03205.9	gi|146305009|ref|YP_001192325.1|	-	0.0011	18.7	0.4	0.0024	17.5	0.3	1.6	1	0	0	1	1	1	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_22	PF13401.1	gi|146305009|ref|YP_001192325.1|	-	0.0014	18.7	4.4	0.13	12.3	0.3	3.5	2	1	1	3	3	3	1	AAA	domain
APS_kinase	PF01583.15	gi|146305009|ref|YP_001192325.1|	-	0.0016	18.1	0.0	0.003	17.2	0.0	1.4	1	0	0	1	1	1	1	Adenylylsulphate	kinase
FtsK_SpoIIIE	PF01580.13	gi|146305009|ref|YP_001192325.1|	-	0.002	17.6	0.0	0.004	16.6	0.0	1.5	1	0	0	1	1	1	1	FtsK/SpoIIIE	family
T4SS-DNA_transf	PF02534.9	gi|146305009|ref|YP_001192325.1|	-	0.0059	15.2	0.0	0.094	11.2	0.0	2.2	2	0	0	2	2	2	1	Type	IV	secretory	system	Conjugative	DNA	transfer
ABC_tran	PF00005.22	gi|146305009|ref|YP_001192325.1|	-	0.0088	16.3	0.3	0.049	13.9	0.0	2.2	2	0	0	2	2	2	1	ABC	transporter
IstB_IS21	PF01695.12	gi|146305009|ref|YP_001192325.1|	-	0.01	15.2	0.1	0.031	13.7	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
CbiA	PF01656.18	gi|146305009|ref|YP_001192325.1|	-	0.011	15.1	1.6	0.019	14.3	0.4	1.8	2	0	0	2	2	2	0	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
TraG-D_C	PF12696.2	gi|146305009|ref|YP_001192325.1|	-	0.029	14.2	0.0	0.08	12.8	0.0	1.7	1	0	0	1	1	1	0	TraM	recognition	site	of	TraD	and	TraG
ArgK	PF03308.11	gi|146305009|ref|YP_001192325.1|	-	0.037	12.8	0.1	0.29	9.8	0.1	2.0	2	0	0	2	2	2	0	ArgK	protein
SRP54	PF00448.17	gi|146305009|ref|YP_001192325.1|	-	0.048	13.1	0.2	0.096	12.1	0.1	1.5	1	0	0	1	1	1	0	SRP54-type	protein,	GTPase	domain
IPT	PF01745.11	gi|146305009|ref|YP_001192325.1|	-	0.067	12.3	0.2	0.16	11.1	0.1	1.6	1	0	0	1	1	1	0	Isopentenyl	transferase
DUF3677	PF12432.3	gi|146305009|ref|YP_001192325.1|	-	0.076	13.4	0.8	7.7	7.0	0.0	3.0	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF3677)
AAA_29	PF13555.1	gi|146305009|ref|YP_001192325.1|	-	0.12	11.8	0.4	0.31	10.5	0.3	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
Cpn60_TCP1	PF00118.19	gi|146305010|ref|YP_001192326.1|	-	3.5e-162	540.4	10.0	4.1e-162	540.1	6.9	1.0	1	0	0	1	1	1	1	TCP-1/cpn60	chaperonin	family
TF_Zn_Ribbon	PF08271.7	gi|146305011|ref|YP_001192327.1|	-	1.5e-09	37.0	1.1	2.6e-09	36.2	0.8	1.4	1	0	0	1	1	1	1	TFIIB	zinc-binding
A2L_zn_ribbon	PF08792.5	gi|146305011|ref|YP_001192327.1|	-	1e-06	27.9	2.1	1.9e-06	27.1	1.5	1.4	1	0	0	1	1	1	1	A2L	zinc	ribbon	domain
OrfB_Zn_ribbon	PF07282.6	gi|146305011|ref|YP_001192327.1|	-	0.0044	16.6	0.5	0.011	15.3	0.4	1.6	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
Ribosomal_S27e	PF01667.12	gi|146305011|ref|YP_001192327.1|	-	0.016	14.7	0.1	0.032	13.7	0.1	1.4	1	0	0	1	1	1	0	Ribosomal	protein	S27
zf-ribbon_3	PF13248.1	gi|146305011|ref|YP_001192327.1|	-	0.019	14.1	0.9	0.037	13.2	0.7	1.5	1	1	0	1	1	1	0	zinc-ribbon	domain
Lar_restr_allev	PF14354.1	gi|146305011|ref|YP_001192327.1|	-	0.094	13.0	0.2	0.18	12.1	0.1	1.4	1	0	0	1	1	1	0	Restriction	alleviation	protein	Lar
DNA_RNApol_7kD	PF03604.8	gi|146305011|ref|YP_001192327.1|	-	0.27	10.7	6.5	0.49	9.9	0.1	3.0	3	0	0	3	3	3	0	DNA	directed	RNA	polymerase,	7	kDa	subunit
Zn_Tnp_IS1595	PF12760.2	gi|146305011|ref|YP_001192327.1|	-	0.51	10.1	2.6	2.5	7.9	1.2	2.4	2	1	1	3	3	3	0	Transposase	zinc-ribbon	domain
tRNA_int_endo	PF01974.12	gi|146305012|ref|YP_001192328.1|	-	1.1e-07	31.4	0.5	1.1e-06	28.3	0.3	2.1	1	1	0	1	1	1	1	tRNA	intron	endonuclease,	catalytic	C-terminal	domain
Gaa1	PF04114.9	gi|146305012|ref|YP_001192328.1|	-	0.083	11.5	0.0	0.091	11.4	0.0	1.0	1	0	0	1	1	1	0	Gaa1-like,	GPI	transamidase	component
DUF4258	PF14076.1	gi|146305012|ref|YP_001192328.1|	-	0.13	12.3	0.1	1.5	8.8	0.0	2.4	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4258)
tRNA-synt_His	PF13393.1	gi|146305013|ref|YP_001192329.1|	-	3.4e-67	226.7	0.0	4.1e-67	226.4	0.0	1.1	1	0	0	1	1	1	1	Histidyl-tRNA	synthetase
tRNA-synt_2b	PF00587.20	gi|146305013|ref|YP_001192329.1|	-	5.5e-24	84.6	0.2	1e-23	83.7	0.1	1.4	1	0	0	1	1	1	1	tRNA	synthetase	class	II	core	domain	(G,	H,	P,	S	and	T)
tRNA-synt_2d	PF01409.15	gi|146305013|ref|YP_001192329.1|	-	3.8e-09	36.1	0.1	1e-08	34.7	0.0	1.7	2	0	0	2	2	2	1	tRNA	synthetases	class	II	core	domain	(F)
HGTP_anticodon	PF03129.15	gi|146305013|ref|YP_001192329.1|	-	1.4e-08	34.5	1.4	4.2e-08	33.0	0.1	2.2	2	0	0	2	2	2	1	Anticodon	binding	domain
tRNA-synt_2	PF00152.15	gi|146305013|ref|YP_001192329.1|	-	0.00022	20.1	1.7	0.014	14.1	0.3	2.7	2	1	0	2	2	2	2	tRNA	synthetases	class	II	(D,	K	and	N)
HTH_40	PF14493.1	gi|146305013|ref|YP_001192329.1|	-	0.12	12.5	3.0	1.2	9.3	0.6	3.0	2	1	1	3	3	3	0	Helix-turn-helix	domain
HisK_N	PF09385.5	gi|146305013|ref|YP_001192329.1|	-	0.13	11.8	3.6	0.28	10.8	2.5	1.5	1	0	0	1	1	1	0	Histidine	kinase	N	terminal
Proteasome	PF00227.21	gi|146305014|ref|YP_001192330.1|	-	1.3e-44	151.7	0.0	1.6e-44	151.4	0.0	1.0	1	0	0	1	1	1	1	Proteasome	subunit
IF-2B	PF01008.12	gi|146305015|ref|YP_001192331.1|	-	3e-85	285.6	0.1	3.6e-85	285.3	0.1	1.0	1	0	0	1	1	1	1	Initiation	factor	2	subunit	family
Lsm_C	PF14894.1	gi|146305017|ref|YP_001192333.1|	-	4.6e-31	106.1	0.9	8.1e-31	105.3	0.6	1.4	1	0	0	1	1	1	1	Lsm	C-terminal
LSM	PF01423.17	gi|146305017|ref|YP_001192333.1|	-	2.1e-05	23.9	0.1	4.4e-05	22.9	0.1	1.6	1	1	0	1	1	1	1	LSM	domain
SM-ATX	PF14438.1	gi|146305017|ref|YP_001192333.1|	-	0.0062	16.4	0.0	0.0084	16.0	0.0	1.3	1	0	0	1	1	1	1	Ataxin	2	SM	domain
TGT	PF01702.13	gi|146305018|ref|YP_001192334.1|	-	7.7e-48	162.8	0.0	1.1e-47	162.2	0.0	1.2	1	0	0	1	1	1	1	Queuine	tRNA-ribosyltransferase
Uds1	PF15456.1	gi|146305018|ref|YP_001192334.1|	-	0.055	13.4	0.1	1.8	8.5	0.0	2.7	3	0	0	3	3	3	0	Up-regulated	During	Septation
PAC2	PF09754.4	gi|146305019|ref|YP_001192335.1|	-	1.7e-36	126.1	0.0	2.2e-36	125.7	0.0	1.0	1	0	0	1	1	1	1	PAC2	family
TGT_C2	PF14810.1	gi|146305020|ref|YP_001192336.1|	-	7.9e-26	89.7	0.0	1.6e-25	88.6	0.0	1.6	1	0	0	1	1	1	1	Patch-forming	domain	C2	of	tRNA-guanine	transglycosylase
PUA	PF01472.15	gi|146305020|ref|YP_001192336.1|	-	1.4e-14	53.5	0.8	5.9e-14	51.5	1.1	1.6	2	0	0	2	2	2	1	PUA	domain
AAA	PF00004.24	gi|146305021|ref|YP_001192337.1|	-	2.8e-43	147.2	0.0	5.5e-43	146.3	0.0	1.5	1	0	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
AAA_2	PF07724.9	gi|146305021|ref|YP_001192337.1|	-	4.1e-08	33.3	0.0	2.3e-07	30.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain	(Cdc48	subfamily)
AAA_22	PF13401.1	gi|146305021|ref|YP_001192337.1|	-	6.9e-06	26.2	0.1	0.00017	21.7	0.1	2.6	1	1	0	1	1	1	1	AAA	domain
AAA_16	PF13191.1	gi|146305021|ref|YP_001192337.1|	-	8.5e-06	25.8	0.0	4.8e-05	23.4	0.0	1.9	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_5	PF07728.9	gi|146305021|ref|YP_001192337.1|	-	1e-05	25.3	0.1	0.00012	21.8	0.1	2.7	1	1	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
RuvB_N	PF05496.7	gi|146305021|ref|YP_001192337.1|	-	2.7e-05	23.3	0.0	7.8e-05	21.8	0.0	1.8	2	0	0	2	2	2	1	Holliday	junction	DNA	helicase	ruvB	N-terminus
AAA_17	PF13207.1	gi|146305021|ref|YP_001192337.1|	-	7.5e-05	23.5	0.1	0.00028	21.6	0.0	2.0	2	1	0	2	2	1	1	AAA	domain
Zeta_toxin	PF06414.7	gi|146305021|ref|YP_001192337.1|	-	0.00019	20.6	0.0	0.00057	19.0	0.0	1.8	1	0	0	1	1	1	1	Zeta	toxin
TIP49	PF06068.8	gi|146305021|ref|YP_001192337.1|	-	0.00029	19.6	0.0	0.0021	16.8	0.0	2.0	2	0	0	2	2	2	1	TIP49	C-terminus
AAA_14	PF13173.1	gi|146305021|ref|YP_001192337.1|	-	0.00033	20.5	0.0	0.00091	19.1	0.0	1.8	1	0	0	1	1	1	1	AAA	domain
AAA_28	PF13521.1	gi|146305021|ref|YP_001192337.1|	-	0.00046	20.1	0.0	0.00089	19.2	0.0	1.5	1	0	0	1	1	1	1	AAA	domain
IstB_IS21	PF01695.12	gi|146305021|ref|YP_001192337.1|	-	0.00071	19.0	0.0	0.0015	17.9	0.0	1.5	1	0	0	1	1	1	1	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|146305021|ref|YP_001192337.1|	-	0.00076	18.6	0.0	0.0016	17.6	0.0	1.6	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
DUF815	PF05673.8	gi|146305021|ref|YP_001192337.1|	-	0.00093	18.1	0.0	0.0018	17.2	0.0	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
AAA_33	PF13671.1	gi|146305021|ref|YP_001192337.1|	-	0.0031	17.3	0.0	0.0079	16.0	0.0	1.7	1	0	0	1	1	1	1	AAA	domain
AAA_19	PF13245.1	gi|146305021|ref|YP_001192337.1|	-	0.0042	16.8	0.1	0.0097	15.6	0.1	1.6	1	0	0	1	1	1	1	Part	of	AAA	domain
KaiC	PF06745.8	gi|146305021|ref|YP_001192337.1|	-	0.0044	16.1	0.4	0.013	14.6	0.0	1.9	2	1	0	2	2	1	1	KaiC
RNA_helicase	PF00910.17	gi|146305021|ref|YP_001192337.1|	-	0.0048	17.0	0.0	0.0099	16.0	0.0	1.6	1	0	0	1	1	1	1	RNA	helicase
AAA_24	PF13479.1	gi|146305021|ref|YP_001192337.1|	-	0.0068	16.0	0.0	0.012	15.1	0.0	1.4	1	0	0	1	1	1	1	AAA	domain
AAA_25	PF13481.1	gi|146305021|ref|YP_001192337.1|	-	0.0077	15.6	2.6	0.028	13.8	0.3	2.6	1	1	2	3	3	3	1	AAA	domain
Arch_ATPase	PF01637.13	gi|146305021|ref|YP_001192337.1|	-	0.0096	15.6	0.0	0.03	14.0	0.0	1.8	1	1	0	1	1	1	1	Archaeal	ATPase
AAA_18	PF13238.1	gi|146305021|ref|YP_001192337.1|	-	0.01	16.1	0.0	0.029	14.6	0.0	1.9	2	0	0	2	2	1	1	AAA	domain
Sigma54_activat	PF00158.21	gi|146305021|ref|YP_001192337.1|	-	0.011	15.2	0.2	0.06	12.8	0.0	2.2	2	1	0	2	2	2	0	Sigma-54	interaction	domain
NACHT	PF05729.7	gi|146305021|ref|YP_001192337.1|	-	0.012	15.3	0.1	0.064	12.9	0.0	2.0	1	1	0	2	2	2	0	NACHT	domain
Bac_DnaA	PF00308.13	gi|146305021|ref|YP_001192337.1|	-	0.013	15.1	0.0	0.055	13.1	0.0	1.9	2	0	0	2	2	2	0	Bacterial	dnaA	protein
Parvo_NS1	PF01057.12	gi|146305021|ref|YP_001192337.1|	-	0.041	12.7	0.0	0.071	11.9	0.0	1.3	1	0	0	1	1	1	0	Parvovirus	non-structural	protein	NS1
Sigma54_activ_2	PF14532.1	gi|146305021|ref|YP_001192337.1|	-	0.048	13.7	0.0	0.12	12.3	0.0	1.7	1	1	0	1	1	1	0	Sigma-54	interaction	domain
PhoH	PF02562.11	gi|146305021|ref|YP_001192337.1|	-	0.06	12.5	0.1	0.17	11.0	0.1	1.7	1	0	0	1	1	1	0	PhoH-like	protein
ATP-synt_ab	PF00006.20	gi|146305021|ref|YP_001192337.1|	-	0.078	12.4	0.0	0.22	11.0	0.0	1.8	2	0	0	2	2	2	0	ATP	synthase	alpha/beta	family,	nucleotide-binding	domain
CPT	PF07931.7	gi|146305021|ref|YP_001192337.1|	-	0.084	12.4	0.0	0.17	11.5	0.0	1.5	1	0	0	1	1	1	0	Chloramphenicol	phosphotransferase-like	protein
bZIP_1	PF00170.16	gi|146305021|ref|YP_001192337.1|	-	0.085	12.8	0.9	0.25	11.3	0.6	1.7	1	0	0	1	1	1	0	bZIP	transcription	factor
NTPase_1	PF03266.10	gi|146305021|ref|YP_001192337.1|	-	0.086	12.5	0.5	0.8	9.3	0.1	2.6	2	1	0	2	2	2	0	NTPase
AAA_3	PF07726.6	gi|146305021|ref|YP_001192337.1|	-	0.1	12.2	0.0	0.23	11.0	0.0	1.7	1	0	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
cobW	PF02492.14	gi|146305021|ref|YP_001192337.1|	-	0.12	11.8	0.0	0.22	10.9	0.0	1.4	1	0	0	1	1	1	0	CobW/HypB/UreG,	nucleotide-binding	domain
NB-ARC	PF00931.17	gi|146305021|ref|YP_001192337.1|	-	0.12	11.2	0.0	0.2	10.4	0.0	1.4	1	0	0	1	1	1	0	NB-ARC	domain
HTH_3	PF01381.17	gi|146305022|ref|YP_001192338.1|	-	5.9e-07	29.2	0.7	1.1e-06	28.3	0.5	1.4	1	0	0	1	1	1	1	Helix-turn-helix
HTH_25	PF13413.1	gi|146305022|ref|YP_001192338.1|	-	0.00038	20.0	0.5	0.00068	19.2	0.4	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|146305022|ref|YP_001192338.1|	-	0.0027	17.7	1.4	0.0027	17.7	0.9	1.8	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_31	PF13560.1	gi|146305022|ref|YP_001192338.1|	-	0.0046	17.1	0.0	0.008	16.3	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
zf-UDP	PF14569.1	gi|146305022|ref|YP_001192338.1|	-	0.0052	16.4	0.5	0.0083	15.8	0.4	1.3	1	0	0	1	1	1	1	Zinc-binding	RING-finger
HTH_37	PF13744.1	gi|146305022|ref|YP_001192338.1|	-	0.009	15.7	0.8	0.015	15.0	0.5	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
GvpH	PF05455.6	gi|146305022|ref|YP_001192338.1|	-	0.025	14.2	0.2	0.032	13.8	0.1	1.3	1	0	0	1	1	1	0	GvpH
DUF4428	PF14471.1	gi|146305022|ref|YP_001192338.1|	-	0.071	12.8	1.5	0.13	12.0	0.3	2.0	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF4428)
DZR	PF12773.2	gi|146305022|ref|YP_001192338.1|	-	0.082	12.7	0.2	0.13	12.0	0.1	1.4	1	0	0	1	1	1	0	Double	zinc	ribbon
HGTP_anticodon2	PF12745.2	gi|146305022|ref|YP_001192338.1|	-	1	8.4	5.8	1.3	8.0	4.0	1.1	1	0	0	1	1	1	0	Anticodon	binding	domain	of	tRNAs
MMR_HSR1	PF01926.18	gi|146305023|ref|YP_001192339.1|	-	1.1e-17	64.0	0.0	2e-17	63.2	0.0	1.4	1	0	0	1	1	1	1	50S	ribosome-binding	GTPase
GTP_EFTU	PF00009.22	gi|146305023|ref|YP_001192339.1|	-	1.5e-08	34.3	0.0	8.8e-07	28.5	0.0	2.3	1	1	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
FeoB_N	PF02421.13	gi|146305023|ref|YP_001192339.1|	-	6.7e-07	28.7	0.2	2.9e-06	26.6	0.1	2.0	1	1	0	1	1	1	1	Ferrous	iron	transport	protein	B
Miro	PF08477.8	gi|146305023|ref|YP_001192339.1|	-	1.4e-06	28.7	0.0	3.6e-06	27.4	0.0	1.7	1	0	0	1	1	1	1	Miro-like	protein
SRPRB	PF09439.5	gi|146305023|ref|YP_001192339.1|	-	1.5e-05	24.2	0.0	2.6e-05	23.5	0.0	1.3	1	0	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
Arf	PF00025.16	gi|146305023|ref|YP_001192339.1|	-	9.9e-05	21.6	0.1	0.00048	19.4	0.0	2.0	1	1	0	1	1	1	1	ADP-ribosylation	factor	family
Dynamin_N	PF00350.18	gi|146305023|ref|YP_001192339.1|	-	0.00048	19.9	0.1	0.15	11.8	0.0	2.3	1	1	1	2	2	2	2	Dynamin	family
Ras	PF00071.17	gi|146305023|ref|YP_001192339.1|	-	0.00076	18.9	0.0	0.0038	16.6	0.0	2.1	1	1	0	1	1	1	1	Ras	family
ABC_tran	PF00005.22	gi|146305023|ref|YP_001192339.1|	-	0.0068	16.7	0.0	0.017	15.4	0.0	1.7	1	0	0	1	1	1	1	ABC	transporter
AAA_23	PF13476.1	gi|146305023|ref|YP_001192339.1|	-	0.01	16.1	5.6	0.022	15.1	1.9	2.1	1	1	1	2	2	2	0	AAA	domain
AAA_29	PF13555.1	gi|146305023|ref|YP_001192339.1|	-	0.048	13.1	0.0	0.19	11.2	0.0	2.0	2	0	0	2	2	2	0	P-loop	containing	region	of	AAA	domain
Pes-10	PF07149.6	gi|146305023|ref|YP_001192339.1|	-	0.054	12.2	0.0	1	8.0	0.0	2.0	2	0	0	2	2	2	0	Pes-10
GTP-bdg_N	PF13167.1	gi|146305023|ref|YP_001192339.1|	-	0.061	13.4	0.0	0.13	12.4	0.0	1.5	1	0	0	1	1	1	0	GTP-binding	GTPase	N-terminal
Trm56	PF01994.11	gi|146305024|ref|YP_001192340.1|	-	1.3e-49	166.9	0.2	1.6e-49	166.6	0.2	1.1	1	0	0	1	1	1	1	tRNA	ribose	2'-O-methyltransferase,	aTrm56
SpoU_methylase	PF00588.14	gi|146305024|ref|YP_001192340.1|	-	0.0018	18.1	0.0	0.0024	17.7	0.0	1.2	1	0	0	1	1	1	1	SpoU	rRNA	Methylase	family
TFIIE_alpha	PF02002.12	gi|146305025|ref|YP_001192341.1|	-	2.4e-26	91.2	6.2	2.4e-26	91.2	4.3	1.9	2	0	0	2	2	2	1	TFIIE	alpha	subunit
HTH_9	PF08221.6	gi|146305025|ref|YP_001192341.1|	-	2.9e-06	27.0	0.1	8e-06	25.6	0.0	1.7	2	0	0	2	2	2	1	RNA	polymerase	III	subunit	RPC82	helix-turn-helix	domain
HTH_20	PF12840.2	gi|146305025|ref|YP_001192341.1|	-	0.001	18.8	0.0	0.0019	17.9	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
Phage_rep_org_N	PF09681.5	gi|146305025|ref|YP_001192341.1|	-	0.002	17.6	0.4	0.009	15.5	0.1	2.1	1	1	0	2	2	2	1	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
TF_Zn_Ribbon	PF08271.7	gi|146305025|ref|YP_001192341.1|	-	0.0048	16.1	0.8	0.012	14.8	0.6	1.8	1	0	0	1	1	1	1	TFIIB	zinc-binding
Zn_Tnp_IS1595	PF12760.2	gi|146305025|ref|YP_001192341.1|	-	0.0062	16.3	0.0	0.013	15.2	0.0	1.5	1	0	0	1	1	1	1	Transposase	zinc-ribbon	domain
Rrf2	PF02082.15	gi|146305025|ref|YP_001192341.1|	-	0.023	14.7	0.0	0.043	13.9	0.0	1.5	1	0	0	1	1	1	0	Transcriptional	regulator
zf-Mss51	PF13824.1	gi|146305025|ref|YP_001192341.1|	-	0.024	14.4	0.1	0.06	13.2	0.0	1.7	1	0	0	1	1	1	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
TrmB	PF01978.14	gi|146305025|ref|YP_001192341.1|	-	0.025	14.2	1.4	0.032	13.9	0.1	1.9	2	0	0	2	2	2	0	Sugar-specific	transcriptional	regulator	TrmB
zf-C4_Topoisom	PF01396.14	gi|146305025|ref|YP_001192341.1|	-	0.033	13.7	0.1	0.083	12.4	0.1	1.7	1	0	0	1	1	1	0	Topoisomerase	DNA	binding	C4	zinc	finger
zf-ISL3	PF14690.1	gi|146305025|ref|YP_001192341.1|	-	0.048	13.6	0.1	0.16	12.0	0.0	1.9	2	0	0	2	2	2	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
DUF2316	PF10078.4	gi|146305025|ref|YP_001192341.1|	-	0.057	13.4	0.0	4.5	7.3	0.0	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2316)
GntR	PF00392.16	gi|146305025|ref|YP_001192341.1|	-	0.07	12.5	0.0	0.18	11.3	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
LexA_DNA_bind	PF01726.11	gi|146305025|ref|YP_001192341.1|	-	0.071	12.6	0.1	0.68	9.5	0.0	2.2	2	0	0	2	2	2	0	LexA	DNA	binding	domain
HypA	PF01155.14	gi|146305025|ref|YP_001192341.1|	-	0.085	12.5	0.2	0.14	11.8	0.0	1.5	2	0	0	2	2	2	0	Hydrogenase	expression/synthesis	hypA	family
HTH_11	PF08279.7	gi|146305025|ref|YP_001192341.1|	-	0.27	10.8	0.0	0.27	10.8	0.0	2.0	3	0	0	3	3	2	0	HTH	domain
DUF1610	PF07754.6	gi|146305025|ref|YP_001192341.1|	-	1.2	9.3	6.5	0.28	11.3	1.4	2.1	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF1610)
MerR-DNA-bind	PF09278.6	gi|146305025|ref|YP_001192341.1|	-	2.1	8.8	4.3	2.1	8.7	0.1	2.7	3	0	0	3	3	3	0	MerR,	DNA	binding
Rad50_zn_hook	PF04423.9	gi|146305025|ref|YP_001192341.1|	-	9	5.8	9.2	2	7.9	0.4	3.1	3	0	0	3	3	3	0	Rad50	zinc	hook	motif
DNA_methylase	PF00145.12	gi|146305026|ref|YP_001192342.1|	-	4.7e-54	183.7	0.0	4.1e-41	141.2	0.0	2.0	1	1	1	2	2	2	2	C-5	cytosine-specific	DNA	methylase
Methyltransf_26	PF13659.1	gi|146305026|ref|YP_001192342.1|	-	3.9e-05	23.6	0.0	6.6e-05	22.9	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_15	PF09445.5	gi|146305026|ref|YP_001192342.1|	-	0.0092	15.5	0.0	0.016	14.7	0.0	1.3	1	0	0	1	1	1	1	RNA	cap	guanine-N2	methyltransferase
DUF2122	PF09895.4	gi|146305027|ref|YP_001192343.1|	-	1.2e-32	112.3	0.0	1.5e-32	111.9	0.0	1.1	1	0	0	1	1	1	1	RecB-family	nuclease	(DUF2122)
Phage_integrase	PF00589.17	gi|146305028|ref|YP_001192344.1|	-	5.3e-05	22.9	0.0	0.19	11.4	0.0	2.6	3	0	0	3	3	3	2	Phage	integrase	family
AAA_10	PF12846.2	gi|146305029|ref|YP_001192345.1|	-	0.011	15.2	0.0	0.044	13.2	0.0	2.1	2	1	0	2	2	2	0	AAA-like	domain
ABC_tran	PF00005.22	gi|146305029|ref|YP_001192345.1|	-	0.053	13.8	0.1	0.2	11.9	0.0	2.1	2	0	0	2	2	2	0	ABC	transporter
AAA_29	PF13555.1	gi|146305029|ref|YP_001192345.1|	-	0.057	12.9	0.0	0.11	12.0	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
DUF4152	PF13680.1	gi|146305030|ref|YP_001192346.1|	-	0.0096	14.9	0.1	0.012	14.5	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF4152)
Antitoxin-MazE	PF04014.13	gi|146305031|ref|YP_001192347.1|	-	0.069	12.8	0.0	0.094	12.4	0.0	1.2	1	0	0	1	1	1	0	Antidote-toxin	recognition	MazE
Rib_5-P_isom_A	PF06026.9	gi|146305032|ref|YP_001192348.1|	-	5.7e-38	129.9	0.0	7.5e-38	129.5	0.0	1.1	1	0	0	1	1	1	1	Ribose	5-phosphate	isomerase	A	(phosphoriboisomerase	A)
Sugar-bind	PF04198.8	gi|146305032|ref|YP_001192348.1|	-	0.04	12.8	0.1	0.058	12.2	0.0	1.1	1	0	0	1	1	1	0	Putative	sugar-binding	domain
LRAT	PF04970.8	gi|146305033|ref|YP_001192349.1|	-	0.037	13.9	0.0	0.043	13.7	0.0	1.1	1	0	0	1	1	1	0	Lecithin	retinol	acyltransferase
Elf1	PF05129.8	gi|146305035|ref|YP_001192351.1|	-	2.7e-19	68.6	0.0	3.3e-19	68.3	0.0	1.1	1	0	0	1	1	1	1	Transcription	elongation	factor	Elf1	like
Lar_restr_allev	PF14354.1	gi|146305035|ref|YP_001192351.1|	-	0.00067	19.9	0.2	0.00067	19.9	0.1	1.6	2	0	0	2	2	2	1	Restriction	alleviation	protein	Lar
DUF4109	PF13397.1	gi|146305035|ref|YP_001192351.1|	-	0.018	15.4	0.1	0.049	14.0	0.0	1.8	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4109)
Rubredoxin	PF00301.15	gi|146305035|ref|YP_001192351.1|	-	0.053	13.4	3.4	0.33	10.8	0.1	3.0	3	0	0	3	3	3	0	Rubredoxin
zf-Mss51	PF13824.1	gi|146305035|ref|YP_001192351.1|	-	0.067	13.0	2.6	3.2	7.6	0.2	2.4	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
zf-ribbon_3	PF13248.1	gi|146305035|ref|YP_001192351.1|	-	0.081	12.1	3.2	0.28	10.4	2.2	1.8	1	1	0	1	1	1	0	zinc-ribbon	domain
DZR	PF12773.2	gi|146305035|ref|YP_001192351.1|	-	0.082	12.7	0.9	0.16	11.8	0.6	1.5	1	1	0	1	1	1	0	Double	zinc	ribbon
OrfB_Zn_ribbon	PF07282.6	gi|146305035|ref|YP_001192351.1|	-	0.091	12.4	0.7	0.2	11.3	0.5	1.6	1	1	0	1	1	1	0	Putative	transposase	DNA-binding	domain
zf-CSL	PF05207.8	gi|146305035|ref|YP_001192351.1|	-	0.7	9.4	3.5	0.18	11.3	0.2	1.6	2	0	0	2	2	2	0	CSL	zinc	finger
zinc_ribbon_4	PF13717.1	gi|146305035|ref|YP_001192351.1|	-	1	9.1	4.7	5.6	6.7	3.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Zn_Tnp_IS1595	PF12760.2	gi|146305035|ref|YP_001192351.1|	-	1.1	9.0	3.6	3.4	7.5	2.5	1.8	1	1	0	1	1	1	0	Transposase	zinc-ribbon	domain
zinc_ribbon_5	PF13719.1	gi|146305035|ref|YP_001192351.1|	-	1.2	8.7	4.6	6.4	6.4	3.1	2.1	1	1	1	2	2	2	0	zinc-ribbon	domain
Ribosomal_S27e	PF01667.12	gi|146305035|ref|YP_001192351.1|	-	2.4	7.7	5.1	0.54	9.8	0.6	2.1	2	1	0	2	2	2	0	Ribosomal	protein	S27
PcrB	PF01884.12	gi|146305036|ref|YP_001192352.1|	-	9.2e-60	201.7	0.9	1.1e-59	201.5	0.6	1.0	1	0	0	1	1	1	1	PcrB	family
His_biosynth	PF00977.16	gi|146305036|ref|YP_001192352.1|	-	1.9e-05	24.0	0.0	3.5e-05	23.2	0.0	1.4	1	0	0	1	1	1	1	Histidine	biosynthesis	protein
Trp_syntA	PF00290.15	gi|146305036|ref|YP_001192352.1|	-	0.00086	17.9	0.0	0.0014	17.2	0.0	1.3	1	0	0	1	1	1	1	Tryptophan	synthase	alpha	chain
NanE	PF04131.9	gi|146305036|ref|YP_001192352.1|	-	0.0021	17.0	0.1	0.0042	16.0	0.1	1.5	2	0	0	2	2	2	1	Putative	N-acetylmannosamine-6-phosphate	epimerase
G3P_antiterm	PF04309.7	gi|146305036|ref|YP_001192352.1|	-	0.0039	16.2	0.1	0.0079	15.2	0.1	1.4	1	0	0	1	1	1	1	Glycerol-3-phosphate	responsive	antiterminator
DHO_dh	PF01180.16	gi|146305036|ref|YP_001192352.1|	-	0.0059	15.5	0.1	0.0091	14.9	0.1	1.2	1	0	0	1	1	1	1	Dihydroorotate	dehydrogenase
ThiG	PF05690.9	gi|146305036|ref|YP_001192352.1|	-	0.0089	15.1	0.3	0.02	13.9	0.1	1.6	2	0	0	2	2	2	1	Thiazole	biosynthesis	protein	ThiG
IMPDH	PF00478.20	gi|146305036|ref|YP_001192352.1|	-	0.081	11.7	0.0	0.16	10.8	0.0	1.4	2	0	0	2	2	2	0	IMP	dehydrogenase	/	GMP	reductase	domain
Sec61_beta	PF03911.11	gi|146305037|ref|YP_001192353.1|	-	1.3e-16	60.1	1.5	1.4e-16	59.9	1.0	1.1	1	0	0	1	1	1	1	Sec61beta	family
Oxidored_q3	PF00499.15	gi|146305037|ref|YP_001192353.1|	-	0.052	13.3	0.0	0.055	13.2	0.0	1.2	1	0	0	1	1	1	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
Ninjurin	PF04923.7	gi|146305037|ref|YP_001192353.1|	-	0.14	11.9	0.1	0.16	11.7	0.1	1.1	1	0	0	1	1	1	0	Ninjurin
DUF1634	PF07843.6	gi|146305037|ref|YP_001192353.1|	-	0.21	11.2	2.6	0.26	10.9	1.8	1.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF1634)
CBS	PF00571.23	gi|146305038|ref|YP_001192354.1|	-	1.2e-19	69.8	3.3	2.2e-11	43.3	0.2	2.4	2	0	0	2	2	2	2	CBS	domain
HTH_3	PF01381.17	gi|146305038|ref|YP_001192354.1|	-	4e-14	52.1	0.4	9.3e-14	51.0	0.3	1.6	2	0	0	2	2	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|146305038|ref|YP_001192354.1|	-	8.7e-13	48.2	0.0	1.5e-12	47.5	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|146305038|ref|YP_001192354.1|	-	9.9e-13	47.9	0.1	2e-12	46.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|146305038|ref|YP_001192354.1|	-	2.9e-05	24.1	0.2	9.6e-05	22.5	0.1	1.9	2	0	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_25	PF13413.1	gi|146305038|ref|YP_001192354.1|	-	3e-05	23.5	0.1	0.00059	19.4	0.0	2.2	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_37	PF13744.1	gi|146305038|ref|YP_001192354.1|	-	3.8e-05	23.4	0.2	0.00015	21.4	0.1	1.9	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_38	PF13936.1	gi|146305038|ref|YP_001192354.1|	-	0.00015	21.1	0.3	0.00029	20.3	0.2	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_24	PF13412.1	gi|146305038|ref|YP_001192354.1|	-	0.0013	18.1	1.0	0.011	15.0	0.0	2.8	3	0	0	3	3	3	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4	PF04545.11	gi|146305038|ref|YP_001192354.1|	-	0.024	13.9	0.3	0.063	12.6	0.1	1.8	2	0	0	2	2	2	0	Sigma-70,	region	4
MarR_2	PF12802.2	gi|146305038|ref|YP_001192354.1|	-	0.043	13.4	0.0	0.11	12.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF3867	PF12983.2	gi|146305038|ref|YP_001192354.1|	-	0.061	13.2	0.3	0.13	12.1	0.1	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3867)
HTH_AsnC-type	PF13404.1	gi|146305038|ref|YP_001192354.1|	-	0.088	12.3	0.2	0.24	10.9	0.0	1.9	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
MarR	PF01047.17	gi|146305038|ref|YP_001192354.1|	-	0.12	12.0	0.0	0.3	10.8	0.0	1.6	1	0	0	1	1	1	0	MarR	family
DUF367	PF04034.8	gi|146305039|ref|YP_001192355.1|	-	9e-44	148.1	0.0	1.1e-43	147.9	0.0	1.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF367)
RLI	PF04068.10	gi|146305039|ref|YP_001192355.1|	-	1.1e-10	40.8	0.0	1.8e-10	40.2	0.0	1.3	1	0	0	1	1	1	1	Possible	Fer4-like	domain	in	RNase	L	inhibitor,	RLI
AsnC_trans_reg	PF01037.16	gi|146305040|ref|YP_001192356.1|	-	2.6e-18	65.4	0.0	3e-18	65.2	0.0	1.0	1	0	0	1	1	1	1	AsnC	family
GYD	PF08734.6	gi|146305040|ref|YP_001192356.1|	-	0.0018	17.9	0.0	0.002	17.8	0.0	1.1	1	0	0	1	1	1	1	GYD	domain
Pneumovirus_M2	PF06436.6	gi|146305040|ref|YP_001192356.1|	-	0.079	12.1	0.1	0.088	12.0	0.1	1.1	1	0	0	1	1	1	0	Pneumovirus	matrix	protein	2	(M2)
DUF1743	PF08489.6	gi|146305041|ref|YP_001192357.1|	-	1.4e-31	108.7	0.0	2.3e-31	107.9	0.0	1.4	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF1743)
OrfB_Zn_ribbon	PF07282.6	gi|146305041|ref|YP_001192357.1|	-	0.015	14.9	2.0	0.033	13.8	1.4	1.5	1	0	0	1	1	1	0	Putative	transposase	DNA-binding	domain
Zn_Tnp_IS1595	PF12760.2	gi|146305041|ref|YP_001192357.1|	-	0.077	12.8	3.8	0.17	11.6	2.6	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
UPF0547	PF10571.4	gi|146305041|ref|YP_001192357.1|	-	0.62	9.8	5.0	3.2	7.5	0.3	2.3	2	0	0	2	2	2	0	Uncharacterised	protein	family	UPF0547
Zn-ribbon_8	PF09723.5	gi|146305041|ref|YP_001192357.1|	-	0.91	9.5	3.7	7.4	6.6	0.5	2.3	2	0	0	2	2	2	0	Zinc	ribbon	domain