# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|330833868|ref|YP_004408596.1| - 7.4e-22 76.8 2.2 1.6e-21 75.7 0.6 2.2 2 1 1 3 3 3 1 CDC6, C terminal AAA_22 PF13401.1 gi|330833868|ref|YP_004408596.1| - 1.9e-14 53.9 0.1 5.1e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330833868|ref|YP_004408596.1| - 1.1e-11 45.0 0.0 2.5e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330833868|ref|YP_004408596.1| - 1.3e-10 41.6 0.0 2.1e-10 40.9 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|330833868|ref|YP_004408596.1| - 2.4e-08 33.2 0.1 3.6e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|330833868|ref|YP_004408596.1| - 7e-08 32.4 3.3 7e-08 32.4 2.3 2.0 2 1 0 2 2 1 1 Archaeal ATPase DUF2075 PF09848.4 gi|330833868|ref|YP_004408596.1| - 0.00014 20.9 0.0 0.0002 20.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Bac_DnaA PF00308.13 gi|330833868|ref|YP_004408596.1| - 0.00068 19.3 1.0 0.0041 16.7 0.7 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|330833868|ref|YP_004408596.1| - 0.00097 18.2 1.6 1.4 7.8 0.0 3.1 2 1 1 3 3 3 2 KAP family P-loop domain DEAD PF00270.24 gi|330833868|ref|YP_004408596.1| - 0.0013 18.2 0.9 0.48 9.8 0.1 2.4 1 1 0 2 2 2 2 DEAD/DEAH box helicase DUF815 PF05673.8 gi|330833868|ref|YP_004408596.1| - 0.0015 17.5 0.0 0.0034 16.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|330833868|ref|YP_004408596.1| - 0.0016 17.9 0.0 0.0046 16.4 0.0 1.7 2 1 0 2 2 2 1 Sigma-54 interaction domain Pox_A32 PF04665.7 gi|330833868|ref|YP_004408596.1| - 0.0047 16.2 0.0 0.009 15.3 0.0 1.4 1 0 0 1 1 1 1 Poxvirus A32 protein NACHT PF05729.7 gi|330833868|ref|YP_004408596.1| - 0.0051 16.4 0.0 0.0099 15.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|330833868|ref|YP_004408596.1| - 0.0053 16.4 0.2 0.019 14.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|330833868|ref|YP_004408596.1| - 0.0057 17.4 2.0 0.028 15.2 1.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_32 PF13654.1 gi|330833868|ref|YP_004408596.1| - 0.021 13.5 1.2 0.13 10.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|330833868|ref|YP_004408596.1| - 0.031 13.2 0.2 0.067 12.1 0.2 1.6 1 1 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.17 gi|330833868|ref|YP_004408596.1| - 0.048 13.8 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase DUF61 PF01886.11 gi|330833868|ref|YP_004408596.1| - 0.19 11.5 3.7 4.3 7.1 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function DUF61 DUF87 PF01935.12 gi|330833868|ref|YP_004408596.1| - 0.21 11.3 3.9 9.4 5.9 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function DUF87 E2F_TDP PF02319.15 gi|330833868|ref|YP_004408596.1| - 0.29 10.7 4.4 0.45 10.1 0.1 3.0 3 0 0 3 3 3 0 E2F/DP family winged-helix DNA-binding domain AAA_25 PF13481.1 gi|330833868|ref|YP_004408596.1| - 1.5 8.2 3.7 13 5.0 0.7 2.9 2 1 0 2 2 2 0 AAA domain DUF99 PF01949.11 gi|330833869|ref|YP_004408597.1| - 6.6e-25 87.3 0.0 7.7e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF99 4HBT PF03061.17 gi|330833870|ref|YP_004408598.1| - 9.1e-23 80.1 0.0 1.4e-11 44.3 0.0 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|330833870|ref|YP_004408598.1| - 0.0041 17.5 0.0 1.9 8.9 0.0 2.1 2 0 0 2 2 2 2 Thioesterase-like superfamily CTP_transf_2 PF01467.21 gi|330833871|ref|YP_004408599.1| - 1.1e-10 41.7 0.0 1.5e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase SAM_adeno_trans PF01887.11 gi|330833872|ref|YP_004408600.1| - 2.2e-71 239.9 0.1 2.5e-71 239.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF575 PF04746.7 gi|330833872|ref|YP_004408600.1| - 0.043 13.8 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF575) DUF348 PF03990.9 gi|330833872|ref|YP_004408600.1| - 0.14 11.7 0.2 0.65 9.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF348) CYTH PF01928.16 gi|330833873|ref|YP_004408601.1| - 1e-27 97.0 0.7 1.1e-27 96.8 0.5 1.0 1 0 0 1 1 1 1 CYTH domain DUF3567 PF12091.3 gi|330833873|ref|YP_004408601.1| - 0.047 13.6 0.2 0.12 12.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3567) RNA_pol_Rpb2_5 PF04567.12 gi|330833873|ref|YP_004408601.1| - 0.07 13.1 0.2 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 5 DUF4250 PF14056.1 gi|330833873|ref|YP_004408601.1| - 0.096 12.4 0.6 1.1 9.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) Nol1_Nop2_Fmu PF01189.12 gi|330833874|ref|YP_004408602.1| - 8e-53 179.6 0.0 1e-52 179.3 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|330833874|ref|YP_004408602.1| - 2.8e-07 30.2 0.0 4.5e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330833874|ref|YP_004408602.1| - 0.001 18.2 0.0 0.0027 16.8 0.0 1.6 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PCMT PF01135.14 gi|330833874|ref|YP_004408602.1| - 0.0061 16.1 0.0 0.009 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|330833874|ref|YP_004408602.1| - 0.012 15.1 0.0 0.021 14.3 0.0 1.4 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|330833874|ref|YP_004408602.1| - 0.013 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|330833874|ref|YP_004408602.1| - 0.023 15.2 0.0 0.039 14.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.14 gi|330833874|ref|YP_004408602.1| - 0.027 14.4 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase UPF0113 PF03657.8 gi|330833875|ref|YP_004408603.1| - 1.7e-09 37.5 0.1 2.1e-09 37.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0113) Rad51 PF08423.6 gi|330833876|ref|YP_004408604.1| - 1.7e-92 309.0 0.6 2e-92 308.7 0.4 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|330833876|ref|YP_004408604.1| - 1e-14 54.4 0.1 1.5e-14 53.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|330833876|ref|YP_004408604.1| - 1.3e-14 53.9 0.7 1.9e-14 53.4 0.5 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.1 gi|330833876|ref|YP_004408604.1| - 3.3e-11 43.1 0.1 1.1e-10 41.5 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain KaiC PF06745.8 gi|330833876|ref|YP_004408604.1| - 9.1e-11 41.3 0.4 1.4e-10 40.6 0.2 1.3 1 0 0 1 1 1 1 KaiC AAA_22 PF13401.1 gi|330833876|ref|YP_004408604.1| - 0.00054 20.1 0.1 0.0011 19.1 0.1 1.5 1 0 0 1 1 1 1 AAA domain Cdd1 PF11731.3 gi|330833876|ref|YP_004408604.1| - 0.004 17.0 0.0 0.0096 15.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus HHH_2 PF12826.2 gi|330833876|ref|YP_004408604.1| - 0.016 15.1 0.0 0.054 13.3 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|330833876|ref|YP_004408604.1| - 0.031 14.2 0.6 0.24 11.3 0.0 2.6 3 0 0 3 3 3 0 Helix-hairpin-helix motif HHH PF00633.18 gi|330833876|ref|YP_004408604.1| - 0.064 12.9 0.1 1.4 8.7 0.0 2.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif AAA_24 PF13479.1 gi|330833876|ref|YP_004408604.1| - 0.08 12.5 0.7 0.33 10.5 0.5 2.1 1 1 0 1 1 1 0 AAA domain HIT PF01230.18 gi|330833877|ref|YP_004408605.1| - 5.3e-12 46.1 0.0 8.3e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|330833877|ref|YP_004408605.1| - 2.2e-08 34.3 0.0 3.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|330833877|ref|YP_004408605.1| - 7.7e-08 32.0 0.5 2e-07 30.6 0.3 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 PALP PF00291.20 gi|330833878|ref|YP_004408606.1| - 1.3e-77 261.0 0.0 2.1e-77 260.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|330833878|ref|YP_004408606.1| - 0.0052 16.2 0.0 0.014 14.8 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|330833878|ref|YP_004408606.1| - 0.023 15.0 0.4 0.11 12.9 0.0 2.2 2 0 0 2 2 2 0 ACT domain ACT_6 PF13740.1 gi|330833878|ref|YP_004408606.1| - 0.096 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 ACT domain PDT PF00800.13 gi|330833879|ref|YP_004408607.1| - 3e-22 79.0 0.3 3.9e-22 78.6 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|330833879|ref|YP_004408607.1| - 1.1e-08 34.4 0.0 2.8e-08 33.0 0.0 1.7 1 0 0 1 1 1 1 ACT domain Astro_capsid_p PF12226.3 gi|330833879|ref|YP_004408607.1| - 0.023 13.9 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 0 Turkey astrovirus capsid protein Sec15 PF04091.7 gi|330833880|ref|YP_004408608.1| - 0.08 12.2 0.2 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Exocyst complex subunit Sec15-like DUF2805 PF10985.3 gi|330833880|ref|YP_004408608.1| - 0.099 12.6 0.0 3.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) DAO PF01266.19 gi|330833881|ref|YP_004408609.1| - 7.7e-13 48.0 0.0 4.8e-11 42.1 0.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330833881|ref|YP_004408609.1| - 8.8e-12 44.1 0.3 1.3e-05 23.8 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|330833881|ref|YP_004408609.1| - 7.6e-11 42.2 2.1 3.3e-05 23.8 0.4 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330833881|ref|YP_004408609.1| - 1.1e-07 31.1 0.5 0.00095 18.1 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|330833881|ref|YP_004408609.1| - 1.4e-07 30.7 1.5 0.0011 17.8 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain Pyr_redox_3 PF13738.1 gi|330833881|ref|YP_004408609.1| - 2e-06 27.9 0.2 0.0014 18.7 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|330833881|ref|YP_004408609.1| - 4.3e-05 22.5 0.1 0.003 16.5 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|330833881|ref|YP_004408609.1| - 0.00038 19.6 0.4 0.0016 17.6 0.1 2.1 2 0 0 2 2 2 1 Thi4 family NAD_binding_9 PF13454.1 gi|330833881|ref|YP_004408609.1| - 0.00054 19.7 0.0 0.0078 16.0 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|330833881|ref|YP_004408609.1| - 0.0014 18.6 0.1 0.0094 15.9 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|330833881|ref|YP_004408609.1| - 0.0032 16.5 0.0 0.0056 15.7 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|330833881|ref|YP_004408609.1| - 0.01 14.4 0.1 0.036 12.6 0.0 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|330833881|ref|YP_004408609.1| - 0.042 14.2 1.6 6.4 7.2 0.1 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Adenylsucc_synt PF00709.16 gi|330833882|ref|YP_004408610.1| - 2.5e-73 247.1 0.8 2.1e-36 125.5 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DUF1297 PF06973.7 gi|330833883|ref|YP_004408611.1| - 2.2e-75 252.1 0.2 3.4e-75 251.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|330833883|ref|YP_004408611.1| - 1.1e-45 154.3 0.0 1.7e-45 153.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|330833883|ref|YP_004408611.1| - 5.5e-07 29.4 0.0 3.7e-05 23.5 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain DUF1297 PF06973.7 gi|330833884|ref|YP_004408612.1| - 1.2e-73 246.4 0.0 1.6e-73 246.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|330833884|ref|YP_004408612.1| - 2.1e-40 137.3 0.0 3.4e-40 136.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_3 PF02655.9 gi|330833884|ref|YP_004408612.1| - 0.0014 18.5 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|330833884|ref|YP_004408612.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_4 PF13535.1 gi|330833884|ref|YP_004408612.1| - 0.12 12.0 0.0 0.39 10.4 0.0 1.8 1 1 0 1 1 1 0 ATP-grasp domain Lyase_1 PF00206.15 gi|330833885|ref|YP_004408613.1| - 9.2e-44 149.8 0.0 1.4e-43 149.2 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|330833885|ref|YP_004408613.1| - 3.3e-19 68.6 0.4 1.8e-18 66.3 0.0 2.3 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.1 gi|330833885|ref|YP_004408613.1| - 0.00025 21.0 0.2 0.0046 16.9 0.0 2.9 2 1 1 3 3 3 1 Argininosuccinate lyase C-terminal FumaraseC_C PF10415.4 gi|330833885|ref|YP_004408613.1| - 0.00045 20.2 0.1 0.35 10.9 0.0 3.0 3 0 0 3 3 3 2 Fumarase C C-terminus AIRS PF00586.19 gi|330833886|ref|YP_004408614.1| - 1.6e-10 41.0 0.0 2.9e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|330833886|ref|YP_004408614.1| - 0.0012 18.8 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.16 gi|330833887|ref|YP_004408615.1| - 7.3e-17 62.0 0.0 7.3e-17 62.0 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|330833887|ref|YP_004408615.1| - 3.7e-08 33.4 0.0 9.4e-08 32.0 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330833887|ref|YP_004408615.1| - 1.7e-06 28.2 0.0 3.7e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S13 PF02113.10 gi|330833887|ref|YP_004408615.1| - 0.15 10.5 0.0 0.32 9.4 0.0 1.4 2 0 0 2 2 2 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family RibD_C PF01872.12 gi|330833888|ref|YP_004408616.1| - 3.6e-45 154.0 0.0 4e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Lactamase_B PF00753.22 gi|330833889|ref|YP_004408617.1| - 0.00093 18.8 0.0 0.0017 18.0 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Pribosyltran PF00156.22 gi|330833890|ref|YP_004408618.1| - 1.8e-21 76.1 0.9 3.2e-21 75.3 0.6 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|330833890|ref|YP_004408618.1| - 0.00061 19.5 0.1 0.0018 18.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix UPRTase PF14681.1 gi|330833890|ref|YP_004408618.1| - 0.0051 16.0 0.2 0.0088 15.2 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_31 PF13560.1 gi|330833890|ref|YP_004408618.1| - 0.028 14.6 0.0 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PRTase_2 PF15609.1 gi|330833890|ref|YP_004408618.1| - 0.037 13.3 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase HTH_23 PF13384.1 gi|330833890|ref|YP_004408618.1| - 0.038 13.6 0.0 0.076 12.6 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GatB_N PF02934.10 gi|330833891|ref|YP_004408619.1| - 5.2e-103 343.8 0.0 7.7e-103 343.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|330833891|ref|YP_004408619.1| - 8.9e-39 132.5 4.1 5.3e-38 130.0 2.7 2.1 2 0 0 2 2 2 1 GatB domain OmdA PF13376.1 gi|330833891|ref|YP_004408619.1| - 0.033 13.8 0.2 0.44 10.2 0.0 2.8 3 0 0 3 3 3 0 Bacteriocin-protection, YdeI or OmpD-Associated AAA_23 PF13476.1 gi|330833891|ref|YP_004408619.1| - 0.14 12.4 1.8 0.24 11.7 1.3 1.4 1 0 0 1 1 1 0 AAA domain dCMP_cyt_deam_1 PF00383.17 gi|330833892|ref|YP_004408620.1| - 6.5e-19 67.4 0.0 7.5e-19 67.2 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|330833892|ref|YP_004408620.1| - 1.9e-11 44.0 0.1 3.4e-11 43.2 0.0 1.4 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.1 gi|330833892|ref|YP_004408620.1| - 0.0036 16.7 0.8 0.61 9.4 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases UPRTase PF14681.1 gi|330833893|ref|YP_004408621.1| - 9.3e-52 175.2 0.1 1.1e-51 175.0 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|330833893|ref|YP_004408621.1| - 1e-08 34.9 0.4 2e-08 33.9 0.3 1.5 1 1 1 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|330833893|ref|YP_004408621.1| - 0.067 12.4 0.1 0.32 10.2 0.1 1.9 1 1 0 1 1 1 0 Phosphoribosyl transferase Caps_synth_CapC PF14102.1 gi|330833893|ref|YP_004408621.1| - 0.083 13.0 0.1 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Capsule biosynthesis CapC Ribosomal_S28e PF01200.13 gi|330833894|ref|YP_004408622.1| - 3.9e-30 103.4 3.1 4.4e-30 103.2 2.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|330833894|ref|YP_004408622.1| - 0.091 12.5 1.4 0.56 10.0 0.1 2.6 2 1 1 3 3 3 0 KOW motif Ribosomal_L24e PF01246.15 gi|330833895|ref|YP_004408623.1| - 3e-20 71.8 0.7 3.1e-20 71.7 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|330833895|ref|YP_004408623.1| - 0.00031 20.3 1.6 0.00048 19.6 1.0 1.4 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.13 gi|330833895|ref|YP_004408623.1| - 0.0042 16.9 0.1 0.007 16.2 0.1 1.4 1 1 0 1 1 1 1 MYND finger YHS PF04945.8 gi|330833895|ref|YP_004408623.1| - 0.044 13.6 0.1 0.074 12.9 0.1 1.5 1 1 0 1 1 1 0 YHS domain DUF2175 PF09943.4 gi|330833895|ref|YP_004408623.1| - 0.066 13.2 0.4 0.07 13.1 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) DUF2116 PF09889.4 gi|330833895|ref|YP_004408623.1| - 0.084 12.6 1.7 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NDK PF00334.14 gi|330833896|ref|YP_004408624.1| - 2.9e-54 182.5 0.1 3.2e-54 182.3 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF4425 PF14466.1 gi|330833896|ref|YP_004408624.1| - 0.059 13.4 0.1 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4425) GTP_EFTU PF00009.22 gi|330833897|ref|YP_004408625.1| - 1.7e-32 112.3 0.1 4.5e-32 110.9 0.1 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.1 gi|330833897|ref|YP_004408625.1| - 1.4e-23 82.3 1.5 5.8e-23 80.3 1.0 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.3 gi|330833897|ref|YP_004408625.1| - 4.5e-17 61.9 0.3 1.1e-16 60.6 0.2 1.6 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|330833897|ref|YP_004408625.1| - 3.8e-11 42.9 5.2 6.6e-10 38.9 0.1 3.3 3 0 0 3 3 3 1 Elongation factor Tu domain 2 Miro PF08477.8 gi|330833897|ref|YP_004408625.1| - 7.6e-07 29.6 0.3 4.6e-06 27.1 0.0 2.4 2 0 0 2 2 2 1 Miro-like protein MMR_HSR1 PF01926.18 gi|330833897|ref|YP_004408625.1| - 2e-06 27.7 0.1 5.4e-06 26.3 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase Ras PF00071.17 gi|330833897|ref|YP_004408625.1| - 0.0015 17.9 0.0 0.0069 15.7 0.0 2.2 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.4 gi|330833897|ref|YP_004408625.1| - 0.0031 16.9 0.5 0.95 8.9 0.0 3.7 3 1 1 4 4 4 1 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|330833897|ref|YP_004408625.1| - 0.0035 17.1 0.6 0.078 12.7 0.0 2.8 3 0 0 3 3 3 1 Dynamin family Arf PF00025.16 gi|330833897|ref|YP_004408625.1| - 0.0048 16.1 0.3 3.8 6.7 0.0 3.0 2 1 0 2 2 2 2 ADP-ribosylation factor family DUF367 PF04034.8 gi|330833897|ref|YP_004408625.1| - 0.057 13.0 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF367) MobB PF03205.9 gi|330833897|ref|YP_004408625.1| - 0.079 12.6 1.0 0.73 9.5 0.2 2.7 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.5 gi|330833897|ref|YP_004408625.1| - 0.08 12.1 1.5 0.33 10.1 0.2 2.6 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit Malic_M PF03949.10 gi|330833898|ref|YP_004408626.1| - 7e-68 228.9 0.1 8.8e-68 228.6 0.1 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|330833898|ref|YP_004408626.1| - 8e-27 93.9 0.2 6.6e-24 84.4 0.1 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain RNA_pol_Rpb5_C PF01191.14 gi|330833899|ref|YP_004408627.1| - 1.7e-29 101.2 0.1 1.9e-29 101.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain PYC_OADA PF02436.13 gi|330833899|ref|YP_004408627.1| - 0.076 12.4 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Conserved carboxylase domain RNA_pol_Rpb2_6 PF00562.23 gi|330833900|ref|YP_004408628.1| - 5.7e-127 423.6 0.0 9.9e-127 422.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|330833900|ref|YP_004408628.1| - 2.4e-62 209.4 0.0 3.9e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|330833900|ref|YP_004408628.1| - 2.8e-38 131.2 0.0 5.1e-38 130.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|330833900|ref|YP_004408628.1| - 3.8e-28 97.5 0.0 8.5e-28 96.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|330833900|ref|YP_004408628.1| - 2.1e-25 88.2 0.0 6.8e-25 86.6 0.0 2.0 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|330833900|ref|YP_004408628.1| - 2.1e-17 62.7 0.9 4.9e-17 61.4 0.6 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|330833900|ref|YP_004408628.1| - 1e-12 47.8 0.7 1e-12 47.8 0.5 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 DUF2082 PF09855.4 gi|330833900|ref|YP_004408628.1| - 0.51 10.2 1.3 7.6 6.4 0.4 2.5 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF1610 PF07754.6 gi|330833900|ref|YP_004408628.1| - 0.64 10.1 1.8 0.99 9.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNA_pol_Rpb1_1 PF04997.7 gi|330833901|ref|YP_004408629.1| - 1.4e-88 297.4 0.2 5e-88 295.5 0.1 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|330833901|ref|YP_004408629.1| - 1.3e-69 233.3 0.0 4.4e-69 231.6 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|330833901|ref|YP_004408629.1| - 2.3e-36 124.9 0.0 5e-36 123.8 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.12 gi|330833901|ref|YP_004408629.1| - 5.4e-33 112.9 0.0 1.4e-32 111.5 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|330833901|ref|YP_004408629.1| - 3.9e-26 91.9 0.2 8e-26 90.9 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 zf-FPG_IleRS PF06827.9 gi|330833901|ref|YP_004408629.1| - 0.03 13.9 6.3 0.31 10.7 0.2 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS zf-ribbon_3 PF13248.1 gi|330833901|ref|YP_004408629.1| - 0.61 9.3 6.4 4.4 6.6 0.5 3.2 2 1 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_5 PF04998.12 gi|330833902|ref|YP_004408630.1| - 1e-52 179.1 0.7 1.3e-52 178.8 0.5 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1493 PF07377.7 gi|330833902|ref|YP_004408630.1| - 0.011 15.7 0.3 0.046 13.8 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1493) B5 PF03484.10 gi|330833902|ref|YP_004408630.1| - 0.14 12.0 6.2 0.36 10.7 0.2 3.8 3 2 1 4 4 4 0 tRNA synthetase B5 domain Ribosomal_L7Ae PF01248.21 gi|330833903|ref|YP_004408631.1| - 1.1e-14 53.7 0.0 1.3e-14 53.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.12 gi|330833904|ref|YP_004408632.1| - 7.2e-19 67.1 4.2 3.7e-15 55.2 0.4 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|330833904|ref|YP_004408632.1| - 3e-14 52.5 0.6 3e-14 52.5 0.4 1.9 2 1 1 3 3 3 1 NusA-like KH domain KH_4 PF13083.1 gi|330833904|ref|YP_004408632.1| - 3.1e-14 52.3 0.7 3e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|330833904|ref|YP_004408632.1| - 3.4e-05 23.4 4.9 0.00064 19.3 1.0 2.4 1 1 1 2 2 2 2 KH domain Ribosom_S12_S23 PF00164.20 gi|330833905|ref|YP_004408633.1| - 8.5e-40 134.9 0.2 9.6e-40 134.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.9 gi|330833906|ref|YP_004408634.1| - 2.2e-08 33.3 0.2 3.1e-08 32.9 0.1 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Tex_N PF09371.5 gi|330833906|ref|YP_004408634.1| - 0.0082 15.4 0.3 0.012 14.9 0.2 1.2 1 0 0 1 1 1 1 Tex-like protein N-terminal domain Ribosomal_S7 PF00177.16 gi|330833907|ref|YP_004408635.1| - 3.1e-45 153.3 0.2 3.7e-45 153.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|330833908|ref|YP_004408636.1| - 4.8e-53 179.4 0.0 6.5e-53 178.9 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|330833908|ref|YP_004408636.1| - 1.3e-30 105.5 0.1 4.4e-30 103.7 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|330833908|ref|YP_004408636.1| - 4e-21 74.9 4.0 9.1e-20 70.5 1.3 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|330833908|ref|YP_004408636.1| - 3e-08 33.1 1.5 9.7e-08 31.5 1.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|330833908|ref|YP_004408636.1| - 1.1e-05 25.3 0.1 2.4e-05 24.2 0.1 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|330833908|ref|YP_004408636.1| - 0.00049 20.5 0.1 0.0035 17.8 0.0 2.4 1 1 0 1 1 1 1 Miro-like protein Septin PF00735.13 gi|330833908|ref|YP_004408636.1| - 0.0019 17.2 0.1 0.0065 15.5 0.1 1.8 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.18 gi|330833908|ref|YP_004408636.1| - 0.004 17.0 0.1 0.58 9.9 0.1 2.7 1 1 0 1 1 1 1 Dynamin family Gtr1_RagA PF04670.7 gi|330833908|ref|YP_004408636.1| - 0.1 11.7 0.1 0.8 8.8 0.1 2.0 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Ribosomal_S10 PF00338.17 gi|330833909|ref|YP_004408637.1| - 2.9e-29 100.7 0.1 3.2e-29 100.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GATase_3 PF07685.9 gi|330833910|ref|YP_004408638.1| - 2.3e-25 89.0 0.0 5.7e-25 87.7 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|330833910|ref|YP_004408638.1| - 1e-17 64.1 0.0 1.8e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|330833910|ref|YP_004408638.1| - 7.8e-12 45.2 0.1 1.3e-06 28.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF2208 PF09973.4 gi|330833911|ref|YP_004408639.1| - 8.3e-81 270.6 20.2 9.4e-81 270.4 14.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DUF4401 PF14351.1 gi|330833911|ref|YP_004408639.1| - 0.016 14.2 4.5 0.024 13.6 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) Lsm_C PF14894.1 gi|330833911|ref|YP_004408639.1| - 0.14 11.6 0.7 0.4 10.2 0.3 1.9 1 1 0 1 1 1 0 Lsm C-terminal GWT1 PF06423.7 gi|330833911|ref|YP_004408639.1| - 1.4 9.0 9.1 2.9 8.0 1.4 2.4 2 1 0 2 2 2 0 GWT1 DHBP_synthase PF00926.14 gi|330833912|ref|YP_004408640.1| - 2.1e-49 167.3 0.0 2.4e-49 167.2 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.14 gi|330833913|ref|YP_004408641.1| - 6.3e-16 58.3 0.0 8.1e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase ACT PF01842.20 gi|330833913|ref|YP_004408641.1| - 0.35 10.3 1.7 1.1 8.7 0.5 2.0 2 0 0 2 2 2 0 ACT domain DMRL_synthase PF00885.14 gi|330833914|ref|YP_004408642.1| - 1.8e-40 137.9 0.1 2.2e-40 137.6 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase GGDN PF05165.7 gi|330833915|ref|YP_004408643.1| - 1.8e-37 128.7 0.0 2.5e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 GGDN family Amidohydro_1 PF01979.15 gi|330833916|ref|YP_004408644.1| - 3.9e-16 59.6 0.0 1.6e-09 37.9 0.0 2.1 1 1 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330833916|ref|YP_004408644.1| - 2.3e-08 34.3 0.0 2e-06 28.0 0.0 2.5 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|330833916|ref|YP_004408644.1| - 3.1e-05 23.0 0.0 4.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|330833916|ref|YP_004408644.1| - 0.00014 21.6 0.0 0.00035 20.3 0.0 1.7 1 0 0 1 1 1 1 Amidohydrolase PCNA_N PF00705.13 gi|330833917|ref|YP_004408645.1| - 1.1e-07 31.3 0.9 3.6e-07 29.7 0.3 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|330833917|ref|YP_004408645.1| - 8.6e-06 25.6 0.4 0.032 14.1 0.0 2.6 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|330833917|ref|YP_004408645.1| - 0.00012 21.3 0.3 0.0022 17.1 0.2 2.0 1 1 1 2 2 2 1 Rad9 Hus1 PF04005.7 gi|330833917|ref|YP_004408645.1| - 0.0019 17.2 0.2 0.0056 15.6 0.1 1.7 1 1 1 2 2 2 1 Hus1-like protein Ribosomal_L25p PF01386.14 gi|330833917|ref|YP_004408645.1| - 0.0072 16.4 0.8 1.9 8.6 0.2 2.6 2 0 0 2 2 2 2 Ribosomal L25p family CsgF PF10614.4 gi|330833917|ref|YP_004408645.1| - 0.023 14.6 0.4 0.18 11.8 0.0 2.2 2 0 0 2 2 2 0 Type VIII secretion system (T8SS), CsgF protein Ubiquitin_2 PF14560.1 gi|330833917|ref|YP_004408645.1| - 0.045 14.0 0.5 0.97 9.7 0.1 2.7 2 1 1 3 3 3 0 Ubiquitin-like domain Baculo_gp64 PF03273.8 gi|330833917|ref|YP_004408645.1| - 0.096 10.8 0.1 0.14 10.2 0.0 1.2 1 0 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family Antitoxin-MazE PF04014.13 gi|330833917|ref|YP_004408645.1| - 0.14 11.9 1.3 0.75 9.5 0.1 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE RNA_pol_Rpo13 PF12136.3 gi|330833918|ref|YP_004408646.1| - 4.9e-14 51.7 0.1 4.9e-14 51.7 0.1 2.1 1 1 1 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain Peptidase_S49_N PF08496.5 gi|330833918|ref|YP_004408646.1| - 0.5 10.1 6.6 0.6 9.8 4.6 1.1 1 0 0 1 1 1 0 Peptidase family S49 N-terminal AAA_10 PF12846.2 gi|330833919|ref|YP_004408647.1| - 7.2e-29 101.1 0.4 1e-28 100.6 0.3 1.1 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|330833919|ref|YP_004408647.1| - 7.6e-11 42.2 1.8 2.1e-10 40.8 0.9 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|330833919|ref|YP_004408647.1| - 0.0001 21.0 0.1 0.12 10.9 0.0 2.7 3 0 0 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|330833919|ref|YP_004408647.1| - 0.00017 21.7 0.0 0.02 15.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|330833919|ref|YP_004408647.1| - 0.0013 18.2 0.0 0.0035 16.8 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF258 PF03193.11 gi|330833919|ref|YP_004408647.1| - 0.0019 17.4 0.0 0.0035 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 TraG-D_C PF12696.2 gi|330833919|ref|YP_004408647.1| - 0.0035 17.2 0.0 0.0088 15.9 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG ABC_tran PF00005.22 gi|330833919|ref|YP_004408647.1| - 0.0068 16.7 0.0 0.017 15.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA PF00004.24 gi|330833919|ref|YP_004408647.1| - 0.047 13.8 0.1 0.34 11.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330833919|ref|YP_004408647.1| - 0.055 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|330833919|ref|YP_004408647.1| - 0.081 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.1 gi|330833919|ref|YP_004408647.1| - 0.083 12.4 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.1 gi|330833919|ref|YP_004408647.1| - 0.093 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|330833919|ref|YP_004408647.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|330833919|ref|YP_004408647.1| - 0.15 12.3 3.3 0.67 10.2 2.3 2.0 1 1 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|330833920|ref|YP_004408648.1| - 2e-36 124.9 0.0 4.6e-34 117.3 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|330833920|ref|YP_004408648.1| - 6e-22 78.2 0.0 2.2e-21 76.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.26 gi|330833920|ref|YP_004408648.1| - 1.3e-16 60.1 0.2 7.9e-16 57.6 0.0 2.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330833920|ref|YP_004408648.1| - 4.9e-05 23.2 0.0 0.00012 21.9 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|330833920|ref|YP_004408648.1| - 0.013 14.2 0.0 0.041 12.6 0.0 1.7 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF4373 PF14297.1 gi|330833920|ref|YP_004408648.1| - 0.027 14.7 0.0 0.091 13.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4373) DUF1192 PF06698.6 gi|330833920|ref|YP_004408648.1| - 0.047 13.4 1.8 0.12 12.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) AAA_25 PF13481.1 gi|330833920|ref|YP_004408648.1| - 0.14 11.5 0.2 1 8.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain KOW PF00467.24 gi|330833921|ref|YP_004408649.1| - 0.00075 19.1 0.4 0.002 17.7 0.3 1.8 1 0 0 1 1 1 1 KOW motif Ribosomal_L14e PF01929.12 gi|330833921|ref|YP_004408649.1| - 0.016 15.5 0.1 0.028 14.7 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein L14 YbbR PF07949.7 gi|330833921|ref|YP_004408649.1| - 0.034 14.2 0.3 0.046 13.8 0.2 1.3 1 0 0 1 1 1 0 YbbR-like protein DKCLD PF08068.7 gi|330833922|ref|YP_004408650.1| - 3.2e-14 52.6 0.2 8.1e-14 51.2 0.2 1.6 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.15 gi|330833923|ref|YP_004408651.1| - 1.9e-13 49.9 0.1 3.5e-13 49.0 0.1 1.5 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.13 gi|330833923|ref|YP_004408651.1| - 4.6e-07 30.0 0.1 1.3e-05 25.3 0.1 2.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) MTS PF05175.9 gi|330833924|ref|YP_004408652.1| - 1.9e-38 131.5 0.0 2.1e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|330833924|ref|YP_004408652.1| - 1.6e-12 47.2 0.0 2.1e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330833924|ref|YP_004408652.1| - 7.5e-11 42.0 0.0 1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330833924|ref|YP_004408652.1| - 1.6e-10 41.5 0.0 2.2e-10 41.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330833924|ref|YP_004408652.1| - 1.1e-07 31.3 0.0 1.2e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|330833924|ref|YP_004408652.1| - 1.4e-06 28.0 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.10 gi|330833924|ref|YP_004408652.1| - 6.6e-06 25.6 0.0 8e-06 25.3 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.4 gi|330833924|ref|YP_004408652.1| - 0.0001 21.7 0.0 0.00016 21.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_15 PF09445.5 gi|330833924|ref|YP_004408652.1| - 0.00012 21.6 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TehB PF03848.9 gi|330833924|ref|YP_004408652.1| - 0.00014 21.1 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB GidB PF02527.10 gi|330833924|ref|YP_004408652.1| - 0.00018 20.6 0.1 0.00024 20.2 0.0 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0020 PF01170.13 gi|330833924|ref|YP_004408652.1| - 0.00044 19.8 0.0 0.00075 19.1 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|330833924|ref|YP_004408652.1| - 0.00048 20.4 0.0 0.00066 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330833924|ref|YP_004408652.1| - 0.001 19.4 0.0 0.0017 18.7 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330833924|ref|YP_004408652.1| - 0.0018 18.7 0.0 0.0024 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|330833924|ref|YP_004408652.1| - 0.0022 17.0 0.0 0.0033 16.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) DUF633 PF04816.7 gi|330833924|ref|YP_004408652.1| - 0.0041 16.4 0.0 0.0059 15.9 0.0 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF633) Methyltransf_4 PF02390.12 gi|330833924|ref|YP_004408652.1| - 0.0042 16.1 0.0 0.021 13.8 0.0 1.9 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|330833924|ref|YP_004408652.1| - 0.0067 16.1 0.0 0.0098 15.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330833924|ref|YP_004408652.1| - 0.0074 16.0 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|330833924|ref|YP_004408652.1| - 0.038 13.2 0.0 2.7 7.2 0.0 2.1 2 0 0 2 2 2 0 Histone methylation protein DOT1 Methyltransf_24 PF13578.1 gi|330833924|ref|YP_004408652.1| - 0.11 13.2 0.0 0.21 12.4 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Dam PF05869.6 gi|330833924|ref|YP_004408652.1| - 0.15 11.4 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) PCNA_N PF00705.13 gi|330833925|ref|YP_004408653.1| - 6.3e-15 54.7 0.3 2.4e-14 52.9 0.0 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|330833925|ref|YP_004408653.1| - 4.8e-14 52.3 0.6 8.6e-11 41.8 0.0 2.4 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|330833925|ref|YP_004408653.1| - 6.9e-07 28.6 0.3 9e-07 28.2 0.2 1.3 1 0 0 1 1 1 1 Rad9 Rad1 PF02144.11 gi|330833925|ref|YP_004408653.1| - 4.7e-05 22.3 1.6 0.028 13.1 0.1 2.2 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta_3 PF02768.10 gi|330833925|ref|YP_004408653.1| - 0.00043 19.8 1.8 0.099 12.2 0.1 2.5 2 0 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain DUF2874 PF11396.3 gi|330833925|ref|YP_004408653.1| - 0.16 11.9 1.3 0.42 10.6 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) Meth_synt_1 PF08267.7 gi|330833926|ref|YP_004408654.1| - 2.9e-45 154.8 0.8 1.6e-43 149.1 0.5 2.0 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|330833926|ref|YP_004408654.1| - 1.5e-09 37.2 0.0 3.9e-09 35.9 0.0 1.5 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.13 gi|330833927|ref|YP_004408655.1| - 1.4e-86 290.3 0.0 1.8e-86 290.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|330833927|ref|YP_004408655.1| - 2.4e-26 92.7 1.1 5.3e-21 75.1 0.7 2.0 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|330833927|ref|YP_004408655.1| - 0.00021 20.3 0.0 0.00029 19.8 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Ribosomal_S13_N PF08069.7 gi|330833928|ref|YP_004408656.1| - 9.8e-24 82.9 0.5 2.2e-23 81.8 0.1 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|330833928|ref|YP_004408656.1| - 2.1e-16 59.4 0.1 2.8e-16 59.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF2408 PF10303.4 gi|330833928|ref|YP_004408656.1| - 0.018 15.1 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) Myb_DNA-bind_5 PF13873.1 gi|330833928|ref|YP_004408656.1| - 0.1 12.5 0.6 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain RVT_3 PF13456.1 gi|330833929|ref|YP_004408657.1| - 1.8e-19 69.2 0.0 2.3e-19 68.9 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|330833929|ref|YP_004408657.1| - 5.3e-09 36.5 0.0 6.1e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 RNase H CbiX PF01903.12 gi|330833930|ref|YP_004408658.1| - 6.2e-24 84.1 0.0 7.6e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.6 gi|330833930|ref|YP_004408658.1| - 0.00044 19.4 0.0 0.0005 19.2 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Tna_leader PF08053.6 gi|330833930|ref|YP_004408658.1| - 0.045 13.1 1.5 0.085 12.2 1.0 1.5 1 0 0 1 1 1 0 Tryptophanese operon leader peptide Ribosomal_S6e PF01092.14 gi|330833931|ref|YP_004408659.1| - 1.2e-21 76.7 0.1 2.8e-21 75.4 0.1 1.6 1 0 0 1 1 1 1 Ribosomal protein S6e Molydop_binding PF01568.16 gi|330833931|ref|YP_004408659.1| - 0.084 12.6 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain GTP_EFTU PF00009.22 gi|330833932|ref|YP_004408660.1| - 1.5e-40 138.6 0.0 2.4e-40 137.9 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|330833932|ref|YP_004408660.1| - 4.9e-28 97.0 0.2 1.1e-27 95.8 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|330833932|ref|YP_004408660.1| - 1.7e-06 28.0 0.1 4e-05 23.6 0.1 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|330833932|ref|YP_004408660.1| - 0.001 18.5 0.2 0.4 10.1 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|330833932|ref|YP_004408660.1| - 0.0013 18.6 0.0 0.0027 17.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|330833932|ref|YP_004408660.1| - 0.059 12.6 0.3 2.9 7.1 0.0 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B Miro PF08477.8 gi|330833932|ref|YP_004408660.1| - 0.13 12.8 0.1 0.28 11.6 0.1 1.8 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|330833932|ref|YP_004408660.1| - 0.13 12.0 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Dynamin family Fcf1 PF04900.7 gi|330833933|ref|YP_004408661.1| - 1.3e-05 25.1 0.0 2.3e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|330833933|ref|YP_004408661.1| - 0.038 14.0 0.3 0.75 9.9 0.2 2.0 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.12 gi|330833934|ref|YP_004408662.1| - 6e-15 55.1 0.0 1e-14 54.4 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|330833934|ref|YP_004408662.1| - 1.2e-13 50.8 0.5 2.2e-13 50.0 0.3 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.7 gi|330833934|ref|YP_004408662.1| - 0.00079 19.6 0.0 0.0017 18.5 0.0 1.6 1 1 0 1 1 1 1 RNA polymerase III subunit Rpc25 EXOSC1 PF10447.4 gi|330833934|ref|YP_004408662.1| - 0.12 12.3 0.0 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Exosome component EXOSC1/CSL4 DUF359 PF04019.7 gi|330833935|ref|YP_004408663.1| - 2.1e-33 114.2 0.0 2.3e-33 114.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF359) PhosphMutase PF10143.4 gi|330833936|ref|YP_004408664.1| - 8.5e-59 198.0 0.0 1.6e-58 197.1 0.0 1.5 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|330833936|ref|YP_004408664.1| - 9.9e-47 159.4 0.1 1.2e-46 159.1 0.0 1.1 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|330833936|ref|YP_004408664.1| - 0.0046 15.7 0.5 0.034 12.8 0.4 2.1 2 1 1 3 3 3 1 Alkaline phosphatase Sulfatase PF00884.18 gi|330833936|ref|YP_004408664.1| - 0.014 14.6 0.5 0.18 10.9 0.0 2.6 3 0 0 3 3 3 0 Sulfatase Phosphodiest PF01663.17 gi|330833936|ref|YP_004408664.1| - 0.036 13.3 0.6 0.064 12.5 0.4 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase AAA PF00004.24 gi|330833937|ref|YP_004408665.1| - 2.8e-97 322.0 0.0 3.4e-48 163.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330833937|ref|YP_004408665.1| - 5.9e-23 80.6 0.1 2.1e-22 78.8 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|330833937|ref|YP_004408665.1| - 4.7e-18 65.0 0.1 1.8e-09 37.0 0.0 3.3 2 1 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|330833937|ref|YP_004408665.1| - 5.1e-14 52.6 0.0 3.6e-07 30.3 0.0 3.3 3 1 1 4 4 3 2 AAA ATPase domain AAA_2 PF07724.9 gi|330833937|ref|YP_004408665.1| - 8.4e-14 51.8 0.0 1.5e-06 28.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|330833937|ref|YP_004408665.1| - 1.7e-13 50.8 0.1 3.7e-05 23.8 0.0 4.5 2 2 0 2 2 2 2 AAA domain CDC48_2 PF02933.12 gi|330833937|ref|YP_004408665.1| - 7.6e-13 47.8 0.1 4.7e-12 45.3 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|330833937|ref|YP_004408665.1| - 9.3e-13 49.0 0.0 6.2e-07 30.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|330833937|ref|YP_004408665.1| - 1.5e-11 44.3 0.0 0.00012 22.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|330833937|ref|YP_004408665.1| - 2.2e-11 43.7 0.0 2.3e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|330833937|ref|YP_004408665.1| - 4e-11 42.8 0.7 0.00052 19.7 0.0 4.2 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|330833937|ref|YP_004408665.1| - 9.9e-11 40.9 0.0 0.00037 19.3 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus Zeta_toxin PF06414.7 gi|330833937|ref|YP_004408665.1| - 3.5e-10 39.3 0.0 0.00016 20.8 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|330833937|ref|YP_004408665.1| - 1e-09 38.0 0.2 0.0022 17.4 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein AAA_18 PF13238.1 gi|330833937|ref|YP_004408665.1| - 3.5e-08 33.8 0.0 0.0011 19.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|330833937|ref|YP_004408665.1| - 3.5e-08 33.5 0.0 0.0099 15.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|330833937|ref|YP_004408665.1| - 1.4e-07 31.1 3.9 0.014 14.8 0.1 3.8 2 2 1 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|330833937|ref|YP_004408665.1| - 2e-07 31.1 0.0 0.0039 17.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|330833937|ref|YP_004408665.1| - 2.9e-07 29.8 0.9 0.0079 15.3 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|330833937|ref|YP_004408665.1| - 5.5e-07 29.3 0.5 0.14 11.7 0.0 3.9 4 0 0 4 4 4 2 NACHT domain Arch_ATPase PF01637.13 gi|330833937|ref|YP_004408665.1| - 1e-06 28.6 0.3 0.019 14.6 0.0 4.4 3 2 3 6 6 5 1 Archaeal ATPase AAA_24 PF13479.1 gi|330833937|ref|YP_004408665.1| - 1.4e-06 28.0 0.7 0.042 13.4 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|330833937|ref|YP_004408665.1| - 2.3e-06 27.2 1.7 0.029 14.1 0.3 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_3 PF07726.6 gi|330833937|ref|YP_004408665.1| - 2.5e-06 27.1 0.0 0.08 12.5 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|330833937|ref|YP_004408665.1| - 4.9e-06 26.6 0.0 0.068 13.2 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|330833937|ref|YP_004408665.1| - 1.1e-05 24.9 0.1 0.4 10.1 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain Vps4_C PF09336.5 gi|330833937|ref|YP_004408665.1| - 2.5e-05 24.0 0.2 0.047 13.5 0.0 2.9 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.8 gi|330833937|ref|YP_004408665.1| - 4e-05 22.6 0.0 0.1 11.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) KaiC PF06745.8 gi|330833937|ref|YP_004408665.1| - 5.2e-05 22.4 0.2 0.12 11.4 0.0 3.4 2 2 0 3 3 3 1 KaiC ABC_tran PF00005.22 gi|330833937|ref|YP_004408665.1| - 8.7e-05 22.8 0.0 0.7 10.1 0.0 2.9 3 0 0 3 3 2 2 ABC transporter UPF0079 PF02367.12 gi|330833937|ref|YP_004408665.1| - 0.00019 21.0 0.0 0.47 10.0 0.0 2.6 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Parvo_NS1 PF01057.12 gi|330833937|ref|YP_004408665.1| - 0.00022 20.1 0.0 0.55 9.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|330833937|ref|YP_004408665.1| - 0.00023 20.8 0.0 0.072 12.7 0.0 3.1 3 1 0 3 3 2 1 Bacterial dnaA protein SKI PF01202.17 gi|330833937|ref|YP_004408665.1| - 0.00029 20.7 0.0 0.38 10.6 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase PhoH PF02562.11 gi|330833937|ref|YP_004408665.1| - 0.0004 19.6 0.6 0.17 11.0 0.1 2.5 2 0 0 2 2 2 1 PhoH-like protein AFG1_ATPase PF03969.11 gi|330833937|ref|YP_004408665.1| - 0.00055 18.8 0.0 0.78 8.4 0.0 3.1 3 1 0 3 3 3 1 AFG1-like ATPase NTPase_1 PF03266.10 gi|330833937|ref|YP_004408665.1| - 0.00095 18.9 1.7 4 7.1 0.0 4.1 2 2 2 4 4 4 0 NTPase NB-ARC PF00931.17 gi|330833937|ref|YP_004408665.1| - 0.0015 17.4 0.2 0.97 8.2 0.0 2.6 3 0 0 3 3 2 1 NB-ARC domain PduV-EutP PF10662.4 gi|330833937|ref|YP_004408665.1| - 0.0022 17.4 0.2 14 5.1 0.0 3.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_11 PF13086.1 gi|330833937|ref|YP_004408665.1| - 0.0026 17.3 0.0 0.89 9.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain IPT PF01745.11 gi|330833937|ref|YP_004408665.1| - 0.0066 15.6 0.1 1.1 8.3 0.0 2.3 2 0 0 2 2 2 1 Isopentenyl transferase DUF2075 PF09848.4 gi|330833937|ref|YP_004408665.1| - 0.011 14.7 0.0 2.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATP-synt_ab PF00006.20 gi|330833937|ref|YP_004408665.1| - 0.012 15.1 0.0 0.91 8.9 0.0 2.6 2 1 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_10 PF12846.2 gi|330833937|ref|YP_004408665.1| - 0.012 15.0 2.7 4.3 6.6 0.1 3.6 2 2 1 3 3 3 0 AAA-like domain KTI12 PF08433.5 gi|330833937|ref|YP_004408665.1| - 0.019 14.2 0.0 4.5 6.3 0.0 2.5 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Molydop_binding PF01568.16 gi|330833937|ref|YP_004408665.1| - 0.02 14.7 0.0 0.1 12.4 0.0 2.2 2 1 0 2 2 1 0 Molydopterin dinucleotide binding domain AAA_29 PF13555.1 gi|330833937|ref|YP_004408665.1| - 0.021 14.3 0.0 5.4 6.6 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.16 gi|330833937|ref|YP_004408665.1| - 0.037 13.4 0.1 11 5.3 0.0 3.6 2 2 2 4 4 3 0 Guanylate kinase Alpha_E1_glycop PF01589.11 gi|330833937|ref|YP_004408665.1| - 0.042 12.1 0.1 0.064 11.5 0.1 1.1 1 0 0 1 1 1 0 Alphavirus E1 glycoprotein ResIII PF04851.10 gi|330833937|ref|YP_004408665.1| - 0.044 13.6 0.0 3.4 7.4 0.0 2.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Viral_helicase1 PF01443.13 gi|330833937|ref|YP_004408665.1| - 0.047 13.1 0.0 2.1 7.8 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|330833937|ref|YP_004408665.1| - 0.06 12.9 0.0 5.4 6.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|330833937|ref|YP_004408665.1| - 0.081 12.8 0.0 3.6 7.5 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase T2SE PF00437.15 gi|330833937|ref|YP_004408665.1| - 0.089 11.6 0.0 11 4.8 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF258 PF03193.11 gi|330833937|ref|YP_004408665.1| - 0.14 11.3 0.0 11 5.1 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|330833937|ref|YP_004408665.1| - 0.16 12.2 0.0 17 5.6 0.1 2.6 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|330833937|ref|YP_004408665.1| - 3.6 7.4 3.9 34 4.2 0.0 3.6 3 2 1 4 4 3 0 AAA domain Topoisom_bac PF01131.15 gi|330833938|ref|YP_004408666.1| - 7.6e-82 275.2 0.1 1.7e-81 274.0 0.1 1.6 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|330833938|ref|YP_004408666.1| - 8.9e-23 80.1 0.0 3.7e-22 78.1 0.0 2.2 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|330833938|ref|YP_004408666.1| - 1.7e-13 50.3 0.0 5.8e-13 48.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Terminase_GpA PF05876.7 gi|330833938|ref|YP_004408666.1| - 0.0021 16.5 0.0 0.0035 15.7 0.0 1.2 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) AAA_25 PF13481.1 gi|330833938|ref|YP_004408666.1| - 0.013 14.9 0.0 0.025 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|330833938|ref|YP_004408666.1| - 0.021 14.4 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Lar_restr_allev PF14354.1 gi|330833938|ref|YP_004408666.1| - 0.055 13.7 0.7 2.7 8.3 0.0 2.6 2 0 0 2 2 2 0 Restriction alleviation protein Lar zf-ISL3 PF14690.1 gi|330833938|ref|YP_004408666.1| - 0.38 10.8 4.4 1.5 8.9 0.0 2.8 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|330833938|ref|YP_004408666.1| - 0.75 9.4 5.5 4.4 7.0 0.7 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|330833938|ref|YP_004408666.1| - 1.3 8.9 2.8 22 4.9 0.2 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330833938|ref|YP_004408666.1| - 2.6 7.4 7.6 3.8 6.9 0.3 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding CN_hydrolase PF00795.17 gi|330833939|ref|YP_004408667.1| - 3.5e-12 46.0 0.0 6.1e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Peptidase_C80 PF11713.3 gi|330833939|ref|YP_004408667.1| - 0.086 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase C80 family Ribosomal_S25 PF03297.10 gi|330833940|ref|YP_004408668.1| - 1.2e-10 41.3 10.1 1.4e-10 41.1 7.0 1.0 1 0 0 1 1 1 1 S25 ribosomal protein Rrf2 PF02082.15 gi|330833940|ref|YP_004408668.1| - 0.0043 17.1 1.3 0.29 11.2 0.1 2.2 1 1 1 2 2 2 2 Transcriptional regulator TFIIF_alpha PF05793.7 gi|330833940|ref|YP_004408668.1| - 0.015 13.7 3.8 0.014 13.7 2.6 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) TrmB PF01978.14 gi|330833940|ref|YP_004408668.1| - 0.017 14.8 0.9 0.035 13.8 0.2 1.8 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Blo-t-5 PF11642.3 gi|330833940|ref|YP_004408668.1| - 0.02 14.6 2.6 0.024 14.3 1.8 1.1 1 0 0 1 1 1 0 Mite allergen Blo t 5 HTH_24 PF13412.1 gi|330833940|ref|YP_004408668.1| - 0.02 14.2 0.1 0.04 13.2 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Pox_VLTF3 PF04947.9 gi|330833940|ref|YP_004408668.1| - 0.022 14.2 6.3 0.031 13.7 4.3 1.3 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like IF-2B PF01008.12 gi|330833940|ref|YP_004408668.1| - 0.048 12.6 3.7 0.061 12.3 2.6 1.0 1 0 0 1 1 1 0 Initiation factor 2 subunit family HTH_Crp_2 PF13545.1 gi|330833940|ref|YP_004408668.1| - 0.068 12.9 0.7 4.7 7.0 0.1 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain DUF4570 PF15134.1 gi|330833940|ref|YP_004408668.1| - 0.17 11.7 2.4 0.26 11.1 1.5 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4570) Tctex-1 PF03645.8 gi|330833940|ref|YP_004408668.1| - 0.39 10.5 2.8 0.84 9.5 2.0 1.6 1 1 0 1 1 1 0 Tctex-1 family DUF643 PF04867.7 gi|330833940|ref|YP_004408668.1| - 1.5 9.2 8.5 3.8 7.9 5.9 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF643) DUF3464 PF11947.3 gi|330833940|ref|YP_004408668.1| - 3.4 7.0 5.4 4.6 6.6 3.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3464) TrmB PF01978.14 gi|330833941|ref|YP_004408669.1| - 1.7e-19 69.2 0.1 4e-19 68.0 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|330833941|ref|YP_004408669.1| - 1.3e-09 37.3 1.5 3.3e-09 35.9 1.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|330833941|ref|YP_004408669.1| - 0.00024 21.3 0.0 0.0021 18.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|330833941|ref|YP_004408669.1| - 0.00063 19.4 0.1 0.0023 17.6 0.0 2.0 1 1 1 2 2 2 1 MarR family HTH_28 PF13518.1 gi|330833941|ref|YP_004408669.1| - 0.0012 18.8 0.2 0.01 15.8 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|330833941|ref|YP_004408669.1| - 0.004 16.7 0.0 0.012 15.2 0.0 1.8 1 1 1 2 2 2 1 MarR family Mga PF05043.8 gi|330833941|ref|YP_004408669.1| - 0.0046 17.2 0.1 0.025 14.8 0.0 2.2 2 0 0 2 2 2 1 Mga helix-turn-helix domain FeoC PF09012.5 gi|330833941|ref|YP_004408669.1| - 0.0055 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator Penicillinase_R PF03965.11 gi|330833941|ref|YP_004408669.1| - 0.012 15.7 0.0 0.033 14.2 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor HTH_29 PF13551.1 gi|330833941|ref|YP_004408669.1| - 0.012 15.7 0.0 0.058 13.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix B-block_TFIIIC PF04182.7 gi|330833941|ref|YP_004408669.1| - 0.016 15.0 0.2 0.24 11.2 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_23 PF13384.1 gi|330833941|ref|YP_004408669.1| - 0.021 14.4 0.1 0.61 9.8 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain PadR PF03551.9 gi|330833941|ref|YP_004408669.1| - 0.027 14.2 0.0 0.061 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|330833941|ref|YP_004408669.1| - 0.029 14.3 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|330833941|ref|YP_004408669.1| - 0.044 13.6 0.2 0.12 12.1 0.2 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.7 gi|330833941|ref|YP_004408669.1| - 0.053 13.1 0.1 0.59 9.7 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_Crp_2 PF13545.1 gi|330833941|ref|YP_004408669.1| - 0.054 13.2 0.0 0.26 11.1 0.0 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_9 PF08221.6 gi|330833941|ref|YP_004408669.1| - 0.069 13.0 0.1 0.31 10.9 0.1 2.1 3 0 0 3 3 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Ftsk_gamma PF09397.5 gi|330833941|ref|YP_004408669.1| - 0.09 12.5 0.0 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 Ftsk gamma domain TFIIE_alpha PF02002.12 gi|330833941|ref|YP_004408669.1| - 0.095 12.2 0.1 0.35 10.3 0.0 2.0 2 0 0 2 2 2 0 TFIIE alpha subunit NUMOD1 PF07453.8 gi|330833941|ref|YP_004408669.1| - 0.1 12.5 1.9 0.81 9.6 0.3 2.8 2 0 0 2 2 2 0 NUMOD1 domain FUR PF01475.14 gi|330833941|ref|YP_004408669.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_AsnC-type PF13404.1 gi|330833941|ref|YP_004408669.1| - 0.12 11.8 0.0 0.36 10.4 0.0 1.8 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain Mor PF08765.6 gi|330833941|ref|YP_004408669.1| - 0.14 11.9 0.0 0.4 10.4 0.0 1.7 1 0 0 1 1 1 0 Mor transcription activator family RHH_2 PF03693.9 gi|330833942|ref|YP_004408670.1| - 6e-06 26.3 0.0 6.2e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) RHH_1 PF01402.16 gi|330833942|ref|YP_004408670.1| - 1.4e-05 24.7 0.0 1.6e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|330833942|ref|YP_004408670.1| - 0.06 13.1 0.0 0.08 12.7 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) GCD14 PF08704.5 gi|330833943|ref|YP_004408671.1| - 1.4e-34 119.6 0.0 1.9e-34 119.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.1 gi|330833943|ref|YP_004408671.1| - 8.4e-14 51.4 0.0 1.2e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330833943|ref|YP_004408671.1| - 7e-13 48.5 0.0 1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|330833943|ref|YP_004408671.1| - 1.5e-10 41.6 0.0 3.1e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330833943|ref|YP_004408671.1| - 3.4e-08 33.5 0.0 1e-07 31.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|330833943|ref|YP_004408671.1| - 3e-07 31.2 0.0 3.4e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330833943|ref|YP_004408671.1| - 4.4e-05 22.7 0.0 7.3e-05 21.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|330833943|ref|YP_004408671.1| - 6e-05 23.3 0.0 0.00012 22.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330833943|ref|YP_004408671.1| - 6.4e-05 22.3 0.0 0.0003 20.2 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_3 PF01596.12 gi|330833943|ref|YP_004408671.1| - 7.7e-05 21.8 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_11 PF08241.7 gi|330833943|ref|YP_004408671.1| - 9.9e-05 22.7 0.0 0.00029 21.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|330833943|ref|YP_004408671.1| - 0.00013 21.6 0.0 0.00018 21.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|330833943|ref|YP_004408671.1| - 0.00015 20.9 0.0 0.00021 20.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|330833943|ref|YP_004408671.1| - 0.00098 18.7 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|330833943|ref|YP_004408671.1| - 0.0082 15.8 0.0 0.042 13.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.1 gi|330833943|ref|YP_004408671.1| - 0.011 15.2 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_12 PF08242.7 gi|330833943|ref|YP_004408671.1| - 0.017 15.5 0.0 0.071 13.5 0.0 2.0 2 1 0 2 2 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|330833943|ref|YP_004408671.1| - 0.02 14.3 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase CMAS PF02353.15 gi|330833943|ref|YP_004408671.1| - 0.036 13.1 0.0 0.061 12.3 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PrmA PF06325.8 gi|330833943|ref|YP_004408671.1| - 0.042 12.9 0.0 0.053 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|330833943|ref|YP_004408671.1| - 0.051 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Gcd10p PF04189.8 gi|330833943|ref|YP_004408671.1| - 0.064 12.3 0.0 0.11 11.6 0.0 1.3 1 0 0 1 1 1 0 Gcd10p family Met_10 PF02475.11 gi|330833943|ref|YP_004408671.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein CHASE3 PF05227.8 gi|330833944|ref|YP_004408672.1| - 0.012 15.2 3.0 0.028 14.0 2.1 1.6 1 1 0 1 1 1 0 CHASE3 domain Senescence PF06911.7 gi|330833944|ref|YP_004408672.1| - 0.035 13.8 0.4 0.038 13.7 0.3 1.1 1 0 0 1 1 1 0 Senescence-associated protein Muted PF14942.1 gi|330833944|ref|YP_004408672.1| - 0.049 13.5 6.1 0.056 13.3 4.2 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein CHDCT2 PF08074.6 gi|330833944|ref|YP_004408672.1| - 0.051 13.3 4.1 0.06 13.0 2.8 1.1 1 0 0 1 1 1 0 CHDCT2 (NUC038) domain Lipoprotein_3 PF00938.12 gi|330833944|ref|YP_004408672.1| - 0.06 13.1 4.0 0.068 12.9 2.1 1.7 1 1 0 1 1 1 0 Lipoprotein Z1 PF10593.4 gi|330833944|ref|YP_004408672.1| - 0.065 12.4 1.9 0.07 12.3 1.3 1.1 1 0 0 1 1 1 0 Z1 domain UPF0278 PF08745.6 gi|330833944|ref|YP_004408672.1| - 0.071 12.3 0.7 0.094 11.9 0.5 1.4 1 1 0 1 1 1 0 UPF0278 family DUF1040 PF06288.8 gi|330833944|ref|YP_004408672.1| - 0.18 12.0 1.9 9.1 6.5 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1040) HrpE PF06188.7 gi|330833944|ref|YP_004408672.1| - 0.18 11.5 3.7 0.21 11.3 2.6 1.1 1 0 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|330833944|ref|YP_004408672.1| - 0.22 11.2 14.8 0.77 9.5 10.3 1.9 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) Plasmid_stabil PF05016.9 gi|330833944|ref|YP_004408672.1| - 0.23 11.8 1.9 0.57 10.6 0.2 2.0 1 1 1 2 2 2 0 Plasmid stabilisation system protein DUF503 PF04456.7 gi|330833944|ref|YP_004408672.1| - 0.28 10.7 3.2 2 8.0 0.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF503) OmpH PF03938.9 gi|330833944|ref|YP_004408672.1| - 0.32 10.9 7.3 0.39 10.6 5.1 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) RRP7 PF12923.2 gi|330833944|ref|YP_004408672.1| - 0.36 10.8 6.6 0.14 12.1 0.8 2.3 1 1 0 2 2 2 0 Ribosomal RNA-processing protein 7 (RRP7) Prominin PF05478.6 gi|330833944|ref|YP_004408672.1| - 0.39 8.1 4.9 0.61 7.5 2.9 1.5 1 1 0 1 1 1 0 Prominin DNA_primase_lrg PF04104.9 gi|330833944|ref|YP_004408672.1| - 0.43 9.8 3.3 0.49 9.6 2.3 1.1 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit ISG65-75 PF11727.3 gi|330833944|ref|YP_004408672.1| - 0.52 9.3 7.6 0.56 9.2 5.3 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein Peptidase_U57 PF05582.7 gi|330833944|ref|YP_004408672.1| - 0.53 9.1 3.7 0.62 8.9 2.6 1.1 1 0 0 1 1 1 0 YabG peptidase U57 DUF445 PF04286.7 gi|330833944|ref|YP_004408672.1| - 0.65 9.4 7.2 0.75 9.2 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Nbl1_Borealin_N PF10444.4 gi|330833944|ref|YP_004408672.1| - 0.66 9.3 4.4 4.7 6.6 0.2 2.6 1 1 2 3 3 3 0 Nbl1 / Borealin N terminal vATP-synt_E PF01991.13 gi|330833944|ref|YP_004408672.1| - 0.71 9.1 14.1 0.88 8.8 9.7 1.2 1 0 0 1 1 1 0 ATP synthase (E/31 kDa) subunit COMPASS-Shg1 PF05205.7 gi|330833944|ref|YP_004408672.1| - 0.88 9.8 8.0 1.2 9.4 5.2 1.3 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 PaaSYMP PF14738.1 gi|330833944|ref|YP_004408672.1| - 1.2 8.8 8.1 6.3 6.4 0.1 2.1 1 1 1 2 2 2 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 V-ATPase_G PF03179.10 gi|330833944|ref|YP_004408672.1| - 1.7 9.0 11.1 2.8 8.2 2.0 2.3 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit ACCA PF03255.9 gi|330833944|ref|YP_004408672.1| - 1.7 8.2 7.7 3.3 7.2 0.8 2.1 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Aldo_ket_red PF00248.16 gi|330833947|ref|YP_004408675.1| - 1.1e-41 142.5 0.0 1.7e-41 141.9 0.0 1.3 1 1 0 1 1 1 1 Aldo/keto reductase family FliH PF02108.11 gi|330833947|ref|YP_004408675.1| - 0.0096 15.8 0.1 0.33 10.8 0.0 2.4 2 0 0 2 2 2 1 Flagellar assembly protein FliH Ham1p_like PF01725.11 gi|330833948|ref|YP_004408676.1| - 1.4e-47 161.5 0.0 1.5e-47 161.3 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.17 gi|330833949|ref|YP_004408677.1| - 2.7e-09 36.6 0.0 4.1e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|330833949|ref|YP_004408677.1| - 8.6e-09 34.9 0.0 1.1e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|330833949|ref|YP_004408677.1| - 3.6e-07 29.4 0.0 1e-06 27.9 0.0 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|330833949|ref|YP_004408677.1| - 4.8e-06 26.4 0.0 7.6e-05 22.5 0.2 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|330833949|ref|YP_004408677.1| - 0.00024 20.3 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase WaaY PF06176.6 gi|330833949|ref|YP_004408677.1| - 0.00051 19.3 0.2 0.00079 18.7 0.1 1.3 1 1 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Pkinase_Tyr PF07714.12 gi|330833949|ref|YP_004408677.1| - 0.00055 19.0 0.0 0.0013 17.8 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase Choline_kinase PF01633.15 gi|330833949|ref|YP_004408677.1| - 0.022 14.3 0.1 0.11 12.0 0.1 1.8 1 1 1 2 2 2 0 Choline/ethanolamine kinase Peptidase_M22 PF00814.20 gi|330833950|ref|YP_004408678.1| - 1.1e-72 244.7 0.0 1.4e-72 244.4 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CheX PF13690.1 gi|330833950|ref|YP_004408678.1| - 0.029 14.2 0.0 0.1 12.4 0.0 1.9 1 1 1 2 2 2 0 Chemotaxis phosphatase CheX Ribosomal_S24e PF01282.14 gi|330833951|ref|YP_004408679.1| - 8e-18 64.0 0.0 1.1e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Thi4 PF01946.12 gi|330833952|ref|YP_004408680.1| - 4.8e-85 284.3 0.6 5.9e-85 284.0 0.4 1.1 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|330833952|ref|YP_004408680.1| - 1.7e-15 56.7 5.7 6.4e-10 38.4 0.4 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330833952|ref|YP_004408680.1| - 3.5e-10 39.7 0.8 7.7e-10 38.6 0.4 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|330833952|ref|YP_004408680.1| - 7e-10 38.3 6.9 3.8e-06 26.0 0.7 3.0 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|330833952|ref|YP_004408680.1| - 9.1e-10 38.1 2.3 1.2e-09 37.7 1.6 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330833952|ref|YP_004408680.1| - 1e-06 28.8 1.0 1.3e-06 28.4 0.7 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330833952|ref|YP_004408680.1| - 1.4e-06 28.4 0.1 4e-06 27.0 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330833952|ref|YP_004408680.1| - 3.8e-06 26.1 0.3 4.9e-06 25.8 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|330833952|ref|YP_004408680.1| - 4.2e-06 27.0 2.5 8.9e-05 22.8 0.3 3.1 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330833952|ref|YP_004408680.1| - 1.7e-05 23.4 0.1 2.7e-05 22.8 0.1 1.4 1 1 0 1 1 1 1 HI0933-like protein GIDA PF01134.17 gi|330833952|ref|YP_004408680.1| - 4.4e-05 22.5 0.1 7.8e-05 21.6 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|330833952|ref|YP_004408680.1| - 0.0005 19.2 0.1 0.0013 17.8 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|330833952|ref|YP_004408680.1| - 0.00086 18.3 0.2 0.0051 15.7 0.1 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|330833952|ref|YP_004408680.1| - 0.0051 16.5 1.1 0.016 14.9 0.1 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding K_oxygenase PF13434.1 gi|330833952|ref|YP_004408680.1| - 0.023 13.6 0.0 0.037 12.9 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|330833952|ref|YP_004408680.1| - 0.053 12.1 1.7 0.41 9.2 0.4 2.1 2 0 0 2 2 2 0 Tryptophan halogenase ThiF PF00899.16 gi|330833952|ref|YP_004408680.1| - 0.084 12.6 0.8 0.28 11.0 0.0 2.1 3 0 0 3 3 3 0 ThiF family GMC_oxred_N PF00732.14 gi|330833952|ref|YP_004408680.1| - 0.086 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase NAD_binding_7 PF13241.1 gi|330833952|ref|YP_004408680.1| - 0.086 13.1 0.0 0.17 12.1 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|330833952|ref|YP_004408680.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Flavoprotein PF02441.14 gi|330833953|ref|YP_004408681.1| - 9.8e-24 83.4 0.0 1.3e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein DUF2083 PF09856.4 gi|330833954|ref|YP_004408682.1| - 0.35 10.5 2.8 0.95 9.1 0.1 2.0 1 1 1 2 2 2 0 Predicted transcriptional regulator (DUF2083) Fer4_18 PF13746.1 gi|330833954|ref|YP_004408682.1| - 0.45 10.9 4.8 2.9 8.3 3.3 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain tRNA_int_endo PF01974.12 gi|330833955|ref|YP_004408683.1| - 1.7e-25 88.6 0.0 2.6e-25 88.0 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|330833955|ref|YP_004408683.1| - 1.1e-17 63.3 1.3 1.9e-17 62.5 0.0 2.1 3 0 0 3 3 3 1 tRNA intron endonuclease, N-terminal domain PhoU_div PF01865.11 gi|330833956|ref|YP_004408684.1| - 6.7e-06 25.4 14.2 0.00015 21.0 3.8 2.6 1 1 1 2 2 2 2 Protein of unknown function DUF47 PhoU PF01895.14 gi|330833956|ref|YP_004408684.1| - 0.00047 20.5 14.2 0.0038 17.6 4.2 2.7 2 1 1 3 3 3 2 PhoU domain Peptidase_M54 PF07998.6 gi|330833956|ref|YP_004408684.1| - 0.2 11.3 1.7 0.35 10.5 0.4 1.9 1 1 1 2 2 2 0 Peptidase family M54 XhlA PF10779.4 gi|330833957|ref|YP_004408685.1| - 0.0076 16.1 4.3 0.76 9.7 0.3 2.2 2 0 0 2 2 2 2 Haemolysin XhlA MutS_III PF05192.13 gi|330833957|ref|YP_004408685.1| - 0.071 12.8 0.8 3.9 7.2 0.1 2.0 1 1 1 2 2 2 0 MutS domain III Snapin_Pallidin PF14712.1 gi|330833957|ref|YP_004408685.1| - 0.17 12.2 0.9 0.32 11.3 0.1 1.8 2 0 0 2 2 2 0 Snapin/Pallidin AF0941-like PF14591.1 gi|330833957|ref|YP_004408685.1| - 0.27 11.2 4.0 0.35 10.9 0.6 2.0 2 0 0 2 2 2 0 AF0941-like Desmo_N PF06771.6 gi|330833957|ref|YP_004408685.1| - 0.5 10.3 3.0 26 4.8 0.1 3.0 2 1 2 4 4 4 0 Viral Desmoplakin N-terminus Molydop_binding PF01568.16 gi|330833958|ref|YP_004408686.1| - 0.0058 16.4 0.0 0.1 12.4 0.0 2.0 1 1 1 2 2 2 1 Molydopterin dinucleotide binding domain AbrB-like PF14250.1 gi|330833958|ref|YP_004408686.1| - 0.025 14.4 0.1 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator tRNA-synt_2b PF00587.20 gi|330833959|ref|YP_004408687.1| - 1.4e-51 174.5 0.1 2.7e-51 173.6 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330833959|ref|YP_004408687.1| - 4.7e-23 80.9 0.1 1.1e-22 79.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain zinc_ribbon_4 PF13717.1 gi|330833959|ref|YP_004408687.1| - 0.39 10.4 1.9 4.7 6.9 0.1 2.8 2 0 0 2 2 2 0 zinc-ribbon domain Arginase PF00491.16 gi|330833960|ref|YP_004408688.1| - 3.8e-66 223.2 0.0 4.5e-66 222.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family DNA_RNApol_7kD PF03604.8 gi|330833961|ref|YP_004408689.1| - 0.00074 18.9 4.5 0.0029 17.0 3.2 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF2072 PF09845.4 gi|330833961|ref|YP_004408689.1| - 0.0019 18.1 0.2 0.002 18.0 0.2 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) Zn_Tnp_IS1595 PF12760.2 gi|330833961|ref|YP_004408689.1| - 0.0027 17.4 1.1 0.047 13.4 0.0 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-C2H2 PF00096.21 gi|330833961|ref|YP_004408689.1| - 0.0077 16.5 3.5 0.36 11.2 0.3 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type OrfB_Zn_ribbon PF07282.6 gi|330833961|ref|YP_004408689.1| - 0.018 14.6 0.3 1.2 8.8 0.1 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_ribbon_recom PF13408.1 gi|330833961|ref|YP_004408689.1| - 0.053 13.7 1.2 1.6 9.0 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|330833961|ref|YP_004408689.1| - 0.074 12.2 0.3 0.074 12.2 0.2 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|330833961|ref|YP_004408689.1| - 0.09 12.8 1.3 0.24 11.4 0.1 1.9 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C3HC4_2 PF13923.1 gi|330833961|ref|YP_004408689.1| - 0.1 12.6 0.6 0.14 12.2 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|330833961|ref|YP_004408689.1| - 0.11 12.0 0.1 0.11 12.0 0.0 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|330833961|ref|YP_004408689.1| - 0.11 12.1 4.4 2.6 7.7 0.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|330833961|ref|YP_004408689.1| - 0.12 12.0 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-BED PF02892.10 gi|330833961|ref|YP_004408689.1| - 0.14 11.9 3.6 0.35 10.6 0.8 2.0 1 1 1 2 2 2 0 BED zinc finger zf-H2C2_2 PF13465.1 gi|330833961|ref|YP_004408689.1| - 0.2 11.9 2.8 3.8 7.9 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Cys_rich_CPXG PF14255.1 gi|330833961|ref|YP_004408689.1| - 0.22 11.3 1.1 0.35 10.7 0.2 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.1 gi|330833961|ref|YP_004408689.1| - 0.28 10.9 4.9 18 5.1 1.1 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|330833961|ref|YP_004408689.1| - 0.29 11.5 1.4 4.8 7.7 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|330833961|ref|YP_004408689.1| - 0.29 11.1 2.3 1.2 9.1 1.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_5 PF14634.1 gi|330833961|ref|YP_004408689.1| - 0.4 10.4 2.4 1.5 8.6 0.0 2.0 1 1 1 2 2 2 0 zinc-RING finger domain Mu-like_Com PF10122.4 gi|330833961|ref|YP_004408689.1| - 0.53 9.3 3.3 1.4 7.9 2.3 1.7 1 1 0 1 1 1 0 Mu-like prophage protein Com zf-C2HC_2 PF13913.1 gi|330833961|ref|YP_004408689.1| - 1.4 8.6 4.5 7.2 6.3 0.7 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type UPF0547 PF10571.4 gi|330833961|ref|YP_004408689.1| - 4 7.2 5.5 0.72 9.5 0.6 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 SUI1 PF01253.17 gi|330833962|ref|YP_004408690.1| - 8.3e-26 89.6 0.5 9.5e-26 89.4 0.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 TFIIB PF00382.14 gi|330833963|ref|YP_004408691.1| - 9.4e-36 121.4 3.6 2e-17 62.7 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|330833963|ref|YP_004408691.1| - 2.4e-13 49.1 0.4 4.4e-13 48.3 0.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.11 gi|330833963|ref|YP_004408691.1| - 3e-06 26.4 1.6 0.00017 20.8 0.3 3.4 3 1 0 3 3 3 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|330833963|ref|YP_004408691.1| - 2.3e-05 23.8 0.2 0.00036 20.0 0.1 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.14 gi|330833963|ref|YP_004408691.1| - 0.00014 21.7 0.1 0.081 12.8 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4_2 PF08281.7 gi|330833963|ref|YP_004408691.1| - 0.00033 20.0 0.2 0.0048 16.3 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|330833963|ref|YP_004408691.1| - 0.00055 19.2 1.2 0.0017 17.7 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|330833963|ref|YP_004408691.1| - 0.0026 16.9 0.3 0.19 10.9 0.1 2.8 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.7 gi|330833963|ref|YP_004408691.1| - 0.0037 16.8 0.5 0.01 15.4 0.4 1.7 1 0 0 1 1 1 1 HTH domain DUF3562 PF12085.3 gi|330833963|ref|YP_004408691.1| - 0.0052 16.5 0.3 0.77 9.6 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3562) Cyclin_N PF00134.18 gi|330833963|ref|YP_004408691.1| - 0.009 15.5 0.2 2.3 7.7 0.0 2.2 2 0 0 2 2 2 1 Cyclin, N-terminal domain HTH_37 PF13744.1 gi|330833963|ref|YP_004408691.1| - 0.023 14.4 0.6 0.21 11.4 0.2 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|330833963|ref|YP_004408691.1| - 0.031 13.9 0.1 0.031 13.9 0.1 3.2 3 0 0 3 3 3 0 Homeodomain-like domain BatA PF07584.6 gi|330833963|ref|YP_004408691.1| - 0.1 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Aerotolerance regulator N-terminal HTH_Crp_2 PF13545.1 gi|330833963|ref|YP_004408691.1| - 0.27 11.0 5.0 0.5 10.1 0.1 3.0 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain DUF131 PF01998.12 gi|330833964|ref|YP_004408692.1| - 2.1e-09 36.5 11.1 2.1e-09 36.5 7.7 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF131 DUF202 PF02656.10 gi|330833964|ref|YP_004408692.1| - 0.0011 19.1 2.4 0.0017 18.5 1.7 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF202) PMP22_Claudin PF00822.15 gi|330833964|ref|YP_004408692.1| - 0.027 14.1 0.3 0.027 14.1 0.2 1.9 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin family FtsX PF02687.16 gi|330833964|ref|YP_004408692.1| - 1.9 8.2 14.1 2.5 7.8 9.8 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF4227 PF14004.1 gi|330833964|ref|YP_004408692.1| - 2 8.3 4.5 1.2 8.9 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) DUF3796 PF12676.2 gi|330833964|ref|YP_004408692.1| - 4.1 7.6 6.8 13 6.0 4.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3796) DUF2157 PF09925.4 gi|330833964|ref|YP_004408692.1| - 4.4 6.9 8.6 4.6 6.8 1.5 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2157) OAD_gamma PF04277.8 gi|330833964|ref|YP_004408692.1| - 6.5 7.2 12.2 5 7.5 0.8 2.1 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF2207 PF09972.4 gi|330833964|ref|YP_004408692.1| - 6.7 5.1 10.0 10 4.5 6.9 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) GTP_EFTU_D2 PF03144.20 gi|330833965|ref|YP_004408693.1| - 0.0021 18.1 0.9 0.0073 16.4 0.3 2.1 2 1 0 2 2 2 1 Elongation factor Tu domain 2 ABC_tran PF00005.22 gi|330833966|ref|YP_004408694.1| - 3.2e-33 114.9 0.0 9e-33 113.4 0.0 1.8 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|330833966|ref|YP_004408694.1| - 8.3e-20 70.9 0.2 1.5e-19 70.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330833966|ref|YP_004408694.1| - 9.3e-17 61.9 2.6 4e-11 43.4 0.0 2.7 2 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|330833966|ref|YP_004408694.1| - 5.5e-08 32.3 0.5 2.1e-06 27.1 0.0 2.2 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330833966|ref|YP_004408694.1| - 2.6e-07 30.8 0.0 0.012 15.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|330833966|ref|YP_004408694.1| - 0.00018 21.0 0.4 0.0066 15.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330833966|ref|YP_004408694.1| - 0.00019 21.0 0.1 0.69 9.2 0.0 2.3 1 1 0 2 2 2 2 AAA-like domain AAA_18 PF13238.1 gi|330833966|ref|YP_004408694.1| - 0.00032 21.0 0.5 0.00032 21.0 0.3 2.6 3 1 0 3 3 2 1 AAA domain AAA_15 PF13175.1 gi|330833966|ref|YP_004408694.1| - 0.00053 19.1 9.4 0.00067 18.8 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_13 PF13166.1 gi|330833966|ref|YP_004408694.1| - 0.00087 17.8 4.8 0.058 11.8 0.0 3.2 3 1 0 3 3 3 1 AAA domain DUF3987 PF13148.1 gi|330833966|ref|YP_004408694.1| - 0.001 17.7 0.0 0.0019 16.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) DUF87 PF01935.12 gi|330833966|ref|YP_004408694.1| - 0.0012 18.6 1.0 0.0036 17.1 0.0 2.2 3 0 0 3 3 3 1 Domain of unknown function DUF87 AAA PF00004.24 gi|330833966|ref|YP_004408694.1| - 0.0025 18.0 0.4 0.053 13.7 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|330833966|ref|YP_004408694.1| - 0.0029 18.4 0.2 0.0086 16.8 0.0 1.9 2 0 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|330833966|ref|YP_004408694.1| - 0.0083 16.0 0.1 0.12 12.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|330833966|ref|YP_004408694.1| - 0.009 15.7 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|330833966|ref|YP_004408694.1| - 0.011 15.6 0.5 0.036 14.0 0.3 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|330833966|ref|YP_004408694.1| - 0.017 14.6 0.1 0.033 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Sigma54_activat PF00158.21 gi|330833966|ref|YP_004408694.1| - 0.019 14.4 0.1 4.3 6.7 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain SbcCD_C PF13558.1 gi|330833966|ref|YP_004408694.1| - 0.019 14.8 0.0 0.074 12.9 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|330833966|ref|YP_004408694.1| - 0.023 14.4 0.7 1.6 8.4 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|330833966|ref|YP_004408694.1| - 0.029 13.2 0.0 0.36 9.6 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain PRK PF00485.13 gi|330833966|ref|YP_004408694.1| - 0.03 13.8 0.0 0.05 13.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family T2SE PF00437.15 gi|330833966|ref|YP_004408694.1| - 0.056 12.3 0.0 0.11 11.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Zot PF05707.7 gi|330833966|ref|YP_004408694.1| - 0.065 12.6 0.0 0.29 10.5 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Sigma54_activ_2 PF14532.1 gi|330833966|ref|YP_004408694.1| - 0.083 12.9 0.0 15 5.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain NACHT PF05729.7 gi|330833966|ref|YP_004408694.1| - 0.084 12.5 0.2 0.45 10.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain FlgN PF05130.7 gi|330833966|ref|YP_004408694.1| - 0.089 13.0 1.9 9.8 6.4 0.1 2.5 2 0 0 2 2 2 0 FlgN protein UPF0079 PF02367.12 gi|330833966|ref|YP_004408694.1| - 0.1 12.2 0.1 0.21 11.2 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|330833966|ref|YP_004408694.1| - 0.11 11.5 0.0 0.21 10.6 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin KaiC PF06745.8 gi|330833966|ref|YP_004408694.1| - 0.43 9.6 3.3 1.6 7.7 0.0 2.6 3 0 0 3 3 3 0 KaiC AAA_23 PF13476.1 gi|330833966|ref|YP_004408694.1| - 1.3 9.3 7.7 55 4.0 4.8 3.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|330833967|ref|YP_004408695.1| - 1e-22 80.9 0.0 5.9e-21 75.2 0.0 2.8 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|330833967|ref|YP_004408695.1| - 5.5e-20 71.4 0.1 9.9e-20 70.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330833967|ref|YP_004408695.1| - 9.7e-15 55.2 7.3 1.2e-13 51.6 5.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330833967|ref|YP_004408695.1| - 6.3e-07 28.8 0.4 4.3e-05 22.8 0.1 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330833967|ref|YP_004408695.1| - 1.5e-05 24.2 0.5 0.00045 19.3 0.1 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|330833967|ref|YP_004408695.1| - 0.0021 17.5 0.2 0.0044 16.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|330833967|ref|YP_004408695.1| - 0.0046 17.1 0.0 1.4 9.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|330833967|ref|YP_004408695.1| - 0.0082 15.8 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_25 PF13481.1 gi|330833967|ref|YP_004408695.1| - 0.01 15.2 0.5 0.03 13.7 0.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|330833967|ref|YP_004408695.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|330833967|ref|YP_004408695.1| - 0.027 13.4 0.0 0.039 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_10 PF12846.2 gi|330833967|ref|YP_004408695.1| - 0.033 13.6 2.3 3.7 6.9 0.0 2.7 3 0 0 3 3 3 0 AAA-like domain AAA PF00004.24 gi|330833967|ref|YP_004408695.1| - 0.04 14.1 1.0 1.7 8.8 0.2 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|330833967|ref|YP_004408695.1| - 0.041 14.2 2.0 0.11 12.7 1.4 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|330833967|ref|YP_004408695.1| - 0.046 14.0 3.8 0.093 13.0 1.5 2.2 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330833967|ref|YP_004408695.1| - 0.052 14.3 0.1 0.1 13.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|330833968|ref|YP_004408696.1| - 6.4e-32 110.5 13.5 6.4e-32 110.5 9.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|330833968|ref|YP_004408696.1| - 0.22 10.8 3.2 0.18 11.2 0.4 2.3 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|330833969|ref|YP_004408697.1| - 3.9e-36 124.3 15.1 3.9e-36 124.3 10.4 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|330833970|ref|YP_004408698.1| - 4.9e-52 177.0 11.1 4.9e-52 177.0 7.7 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.15 gi|330833970|ref|YP_004408698.1| - 6.3e-08 32.2 8.3 0.00021 20.9 1.1 3.6 2 1 0 2 2 2 2 PKD domain HTH_10 PF04967.7 gi|330833971|ref|YP_004408699.1| - 3.9e-19 67.9 0.1 6.9e-19 67.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|330833971|ref|YP_004408699.1| - 0.00013 21.2 0.0 0.00027 20.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|330833971|ref|YP_004408699.1| - 0.00083 19.2 0.3 0.0024 17.7 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|330833971|ref|YP_004408699.1| - 0.00092 18.8 0.0 0.0021 17.6 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|330833971|ref|YP_004408699.1| - 0.0017 17.7 0.1 0.0037 16.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_3 PF01381.17 gi|330833971|ref|YP_004408699.1| - 0.0027 17.5 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix MarR PF01047.17 gi|330833971|ref|YP_004408699.1| - 0.0074 15.9 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|330833971|ref|YP_004408699.1| - 0.018 14.5 0.1 0.038 13.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.2 gi|330833971|ref|YP_004408699.1| - 0.03 14.3 0.1 0.083 12.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.16 gi|330833971|ref|YP_004408699.1| - 0.039 13.5 2.8 0.17 11.4 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family IF2_N PF04760.10 gi|330833971|ref|YP_004408699.1| - 0.063 12.9 0.1 0.22 11.2 0.0 2.1 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|330833971|ref|YP_004408699.1| - 0.066 12.8 0.3 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 HTH domain HHH_8 PF14716.1 gi|330833971|ref|YP_004408699.1| - 0.1 12.7 0.1 0.26 11.5 0.1 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_AraC PF00165.18 gi|330833971|ref|YP_004408699.1| - 0.13 12.1 0.0 1.9 8.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_23 PF13384.1 gi|330833971|ref|YP_004408699.1| - 0.14 11.8 0.1 0.27 10.9 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Aminotran_1_2 PF00155.16 gi|330833972|ref|YP_004408700.1| - 1.7e-14 53.6 0.0 5.6e-12 45.2 0.0 2.9 1 1 0 1 1 1 1 Aminotransferase class I and II tRNA-synt_2c PF01411.14 gi|330833973|ref|YP_004408701.1| - 1.1e-12 47.0 0.2 1.6e-12 46.5 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|330833973|ref|YP_004408701.1| - 6.3e-12 45.1 0.8 9.6e-12 44.5 0.1 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain Pantoate_ligase PF02569.10 gi|330833973|ref|YP_004408701.1| - 0.0041 15.9 0.2 0.0084 14.9 0.0 1.5 2 0 0 2 2 2 1 Pantoate-beta-alanine ligase Snf7 PF03357.16 gi|330833974|ref|YP_004408702.1| - 0.0012 18.2 0.6 0.0018 17.6 0.4 1.3 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.4 gi|330833974|ref|YP_004408702.1| - 0.0019 17.9 0.5 0.0031 17.3 0.3 1.4 1 0 0 1 1 1 1 Tumour suppressor protein DivIVA PF05103.8 gi|330833974|ref|YP_004408702.1| - 0.021 14.9 1.8 0.22 11.6 0.7 2.1 2 0 0 2 2 2 0 DivIVA protein tRNA-synt_1b PF00579.20 gi|330833975|ref|YP_004408703.1| - 1.5e-23 83.4 0.0 2.1e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF3106 PF11304.3 gi|330833975|ref|YP_004408703.1| - 0.079 13.3 0.4 0.15 12.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) HTH_38 PF13936.1 gi|330833976|ref|YP_004408704.1| - 7.6e-18 63.7 0.7 2.7e-06 26.7 0.0 3.4 3 1 0 3 3 3 3 Helix-turn-helix domain HTH_7 PF02796.10 gi|330833976|ref|YP_004408704.1| - 6.3e-16 57.9 7.9 9.9e-07 28.5 0.4 3.1 2 1 1 3 3 3 3 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|330833976|ref|YP_004408704.1| - 2.6e-15 55.5 0.5 0.00037 20.0 0.1 3.1 2 1 1 3 3 3 3 Homeodomain-like domain HTH_28 PF13518.1 gi|330833976|ref|YP_004408704.1| - 8.8e-11 41.6 1.0 0.027 14.4 0.0 3.1 3 0 0 3 3 3 3 Helix-turn-helix domain Terminase_5 PF06056.7 gi|330833976|ref|YP_004408704.1| - 1.5e-09 37.2 1.1 0.0032 16.9 0.1 3.1 3 0 0 3 3 3 2 Putative ATPase subunit of terminase (gpP-like) HTH_24 PF13412.1 gi|330833976|ref|YP_004408704.1| - 4.3e-09 35.6 0.8 0.0073 15.6 0.0 3.4 3 0 0 3 3 3 3 Winged helix-turn-helix DNA-binding HTH_40 PF14493.1 gi|330833976|ref|YP_004408704.1| - 3.4e-07 30.3 1.0 0.08 13.1 0.0 3.2 2 1 1 3 3 3 2 Helix-turn-helix domain GcrA PF07750.6 gi|330833976|ref|YP_004408704.1| - 4.6e-07 30.1 0.1 0.0025 18.0 0.0 2.5 2 1 1 3 3 3 2 GcrA cell cycle regulator HTH_Tnp_IS630 PF01710.11 gi|330833976|ref|YP_004408704.1| - 1.4e-06 27.9 1.5 1.4e-06 27.9 1.0 1.8 2 0 0 2 2 2 1 Transposase Sigma70_r4_2 PF08281.7 gi|330833976|ref|YP_004408704.1| - 2.8e-06 26.7 0.4 0.34 10.4 0.0 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 ANT PF03374.9 gi|330833976|ref|YP_004408704.1| - 2.8e-06 27.3 0.8 0.011 15.8 0.0 3.0 1 1 2 3 3 3 1 Phage antirepressor protein KilAC domain HTH_Tnp_IS1 PF12759.2 gi|330833976|ref|YP_004408704.1| - 5e-06 25.8 0.0 0.034 13.5 0.0 3.0 3 0 0 3 3 3 2 InsA C-terminal domain Recombinase PF07508.8 gi|330833976|ref|YP_004408704.1| - 6e-06 26.4 2.1 0.022 14.9 0.1 2.7 1 1 1 2 2 2 2 Recombinase GerE PF00196.14 gi|330833976|ref|YP_004408704.1| - 1.1e-05 24.6 1.5 0.13 11.6 0.1 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.1 gi|330833976|ref|YP_004408704.1| - 2.2e-05 23.5 0.0 0.058 12.5 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|330833976|ref|YP_004408704.1| - 3.7e-05 23.8 0.2 0.43 10.7 0.0 3.1 2 1 0 2 2 2 1 Winged helix-turn helix HTH_Tnp_1 PF01527.15 gi|330833976|ref|YP_004408704.1| - 5.8e-05 22.9 0.0 0.2 11.6 0.0 2.5 3 0 0 3 3 2 2 Transposase HTH_5 PF01022.15 gi|330833976|ref|YP_004408704.1| - 0.00011 21.8 0.0 3.6 7.3 0.0 3.5 3 1 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_10 PF04967.7 gi|330833976|ref|YP_004408704.1| - 0.00013 21.4 2.1 0.2 11.2 0.1 3.4 3 1 0 3 3 3 1 HTH DNA binding domain IF2_N PF04760.10 gi|330833976|ref|YP_004408704.1| - 0.00016 21.2 8.3 0.77 9.4 0.1 4.3 1 1 3 4 4 4 2 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.7 gi|330833976|ref|YP_004408704.1| - 0.00031 20.3 1.1 0.11 12.1 0.0 3.3 3 0 0 3 3 3 1 HTH domain HTH_36 PF13730.1 gi|330833976|ref|YP_004408704.1| - 0.00064 19.7 6.3 0.095 12.8 0.3 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain CENP-B_N PF04218.8 gi|330833976|ref|YP_004408704.1| - 0.00074 18.8 6.1 0.057 12.8 0.1 3.1 2 1 1 3 3 3 1 CENP-B N-terminal DNA-binding domain TrmB PF01978.14 gi|330833976|ref|YP_004408704.1| - 0.00097 18.7 1.4 0.41 10.3 0.0 3.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB DUF2316 PF10078.4 gi|330833976|ref|YP_004408704.1| - 0.0013 18.6 0.2 1.9 8.5 0.0 3.0 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2316) Sigma70_r4 PF04545.11 gi|330833976|ref|YP_004408704.1| - 0.0016 17.7 0.2 0.63 9.3 0.0 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 PAX PF00292.13 gi|330833976|ref|YP_004408704.1| - 0.0016 18.1 0.0 0.092 12.4 0.0 2.4 1 1 1 2 2 2 1 'Paired box' domain DUF3791 PF12668.2 gi|330833976|ref|YP_004408704.1| - 0.0017 17.9 1.5 4.9 6.8 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) Sigma70_ECF PF07638.6 gi|330833976|ref|YP_004408704.1| - 0.0033 17.1 0.0 1.3 8.6 0.0 2.8 1 1 1 3 3 3 1 ECF sigma factor CPSase_L_D3 PF02787.14 gi|330833976|ref|YP_004408704.1| - 0.0035 17.1 2.2 0.54 10.0 0.1 2.7 1 1 2 3 3 3 2 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MerR_1 PF13411.1 gi|330833976|ref|YP_004408704.1| - 0.0055 16.4 6.6 0.86 9.4 1.1 3.9 2 1 2 4 4 4 1 MerR HTH family regulatory protein Phage_terminase PF10668.4 gi|330833976|ref|YP_004408704.1| - 0.0064 16.2 1.4 1.6 8.6 0.0 3.0 3 0 0 3 3 3 1 Phage terminase small subunit B-block_TFIIIC PF04182.7 gi|330833976|ref|YP_004408704.1| - 0.0095 15.7 3.1 2.7 7.9 0.1 2.7 3 1 0 3 3 2 0 B-block binding subunit of TFIIIC HTH_19 PF12844.2 gi|330833976|ref|YP_004408704.1| - 0.0098 15.9 5.5 1.2 9.2 0.0 3.7 1 1 1 3 3 3 1 Helix-turn-helix domain MRP-L20 PF12824.2 gi|330833976|ref|YP_004408704.1| - 0.01 15.7 0.2 0.014 15.3 0.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 HTH_30 PF13556.1 gi|330833976|ref|YP_004408704.1| - 0.012 15.1 0.0 3.9 7.1 0.0 3.1 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_20 PF12840.2 gi|330833976|ref|YP_004408704.1| - 0.017 14.8 0.0 17 5.2 0.0 3.2 3 1 0 3 3 3 0 Helix-turn-helix domain HTH_6 PF01418.12 gi|330833976|ref|YP_004408704.1| - 0.023 14.4 0.1 6.8 6.4 0.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain, rpiR family NUMOD1 PF07453.8 gi|330833976|ref|YP_004408704.1| - 0.023 14.5 4.7 13 5.8 0.2 3.3 3 0 0 3 3 3 0 NUMOD1 domain FumaraseC_C PF10415.4 gi|330833976|ref|YP_004408704.1| - 0.024 14.7 0.5 0.93 9.6 0.0 2.8 2 1 1 3 3 3 0 Fumarase C C-terminus RPA_C PF08784.6 gi|330833976|ref|YP_004408704.1| - 0.024 15.0 0.1 31 5.0 0.0 3.0 2 1 1 3 3 3 0 Replication protein A C terminal HTH_3 PF01381.17 gi|330833976|ref|YP_004408704.1| - 0.027 14.3 3.9 17 5.3 0.3 4.2 3 1 1 4 4 4 0 Helix-turn-helix HTH_21 PF13276.1 gi|330833976|ref|YP_004408704.1| - 0.03 14.3 3.4 0.13 12.3 0.5 2.8 2 1 0 3 3 2 0 HTH-like domain HTH_17 PF12728.2 gi|330833976|ref|YP_004408704.1| - 0.033 14.4 2.1 6 7.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|330833976|ref|YP_004408704.1| - 0.04 14.1 4.5 9.5 6.5 0.5 3.5 1 1 2 3 3 3 0 Cro/C1-type HTH DNA-binding domain DUF2089 PF09862.4 gi|330833976|ref|YP_004408704.1| - 0.041 13.6 2.1 4.5 7.0 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) MarR_2 PF12802.2 gi|330833976|ref|YP_004408704.1| - 0.048 13.3 0.0 3.7 7.2 0.0 2.9 3 0 0 3 3 3 0 MarR family DUF1699 PF08004.6 gi|330833976|ref|YP_004408704.1| - 0.057 12.9 4.8 0.73 9.3 0.2 2.9 2 1 0 3 3 3 0 Protein of unknown function (DUF1699) HTH_IclR PF09339.5 gi|330833976|ref|YP_004408704.1| - 0.062 12.8 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 IclR helix-turn-helix domain DUF387 PF04079.11 gi|330833976|ref|YP_004408704.1| - 0.089 12.1 0.9 0.81 9.0 0.1 2.3 1 1 1 2 2 2 0 Putative transcriptional regulators (Ypuh-like) Ribosomal_S13_N PF08069.7 gi|330833976|ref|YP_004408704.1| - 0.097 12.5 1.2 2.1 8.2 0.0 2.8 3 0 0 3 3 3 0 Ribosomal S13/S15 N-terminal domain Mga PF05043.8 gi|330833976|ref|YP_004408704.1| - 0.2 11.9 3.0 2.5 8.4 0.0 2.9 2 1 1 3 3 3 0 Mga helix-turn-helix domain HTH_22 PF13309.1 gi|330833976|ref|YP_004408704.1| - 0.22 11.3 3.4 4.9 6.9 0.8 3.4 2 1 1 3 3 3 0 HTH domain DUF4116 PF13475.1 gi|330833976|ref|YP_004408704.1| - 0.72 9.3 3.5 1.1 8.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4116) BLOC1_2 PF10046.4 gi|330833976|ref|YP_004408704.1| - 1.4 9.0 7.9 5.2 7.2 2.9 2.3 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TBCA PF02970.11 gi|330833976|ref|YP_004408704.1| - 1.6 8.8 5.6 0.44 10.6 1.0 2.0 2 1 0 2 2 2 0 Tubulin binding cofactor A LysE PF01810.13 gi|330833978|ref|YP_004408706.1| - 5.9e-16 58.3 10.1 7.4e-16 57.9 7.0 1.1 1 0 0 1 1 1 1 LysE type translocator DPM3 PF08285.6 gi|330833978|ref|YP_004408706.1| - 0.12 12.2 1.0 0.21 11.4 0.7 1.5 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Oxidored_q4 PF00507.14 gi|330833978|ref|YP_004408706.1| - 0.79 9.5 10.4 3.8 7.3 4.6 2.8 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DUF2973 PF11189.3 gi|330833978|ref|YP_004408706.1| - 0.92 9.3 3.0 2.4 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2973) FixQ PF05545.6 gi|330833978|ref|YP_004408706.1| - 9.7 5.9 6.8 5 6.8 1.2 2.5 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ TrmB PF01978.14 gi|330833979|ref|YP_004408707.1| - 1.6e-12 46.9 0.0 2.6e-12 46.2 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330833979|ref|YP_004408707.1| - 1.8e-07 30.7 0.1 4.2e-07 29.5 0.0 1.7 1 1 1 2 2 2 1 MarR family MarR PF01047.17 gi|330833979|ref|YP_004408707.1| - 1.7e-06 27.6 0.0 3.2e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|330833979|ref|YP_004408707.1| - 4.6e-06 26.0 0.0 6e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.1 gi|330833979|ref|YP_004408707.1| - 0.00059 19.1 0.1 0.00099 18.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|330833979|ref|YP_004408707.1| - 0.0018 18.1 0.0 0.0046 16.8 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|330833979|ref|YP_004408707.1| - 0.0025 17.9 0.0 0.0041 17.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|330833979|ref|YP_004408707.1| - 0.0081 15.9 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PadR PF03551.9 gi|330833979|ref|YP_004408707.1| - 0.0089 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Cdc6_C PF09079.6 gi|330833979|ref|YP_004408707.1| - 0.0093 15.6 0.1 0.032 13.9 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal HTH_27 PF13463.1 gi|330833979|ref|YP_004408707.1| - 0.012 15.9 0.1 0.048 13.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain RPA_C PF08784.6 gi|330833979|ref|YP_004408707.1| - 0.015 15.7 0.0 0.029 14.7 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.15 gi|330833979|ref|YP_004408707.1| - 0.016 14.8 0.2 0.03 13.9 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_CodY PF08222.6 gi|330833979|ref|YP_004408707.1| - 0.021 14.1 0.2 0.031 13.6 0.2 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_29 PF13551.1 gi|330833979|ref|YP_004408707.1| - 0.036 14.1 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF4423 PF14394.1 gi|330833979|ref|YP_004408707.1| - 0.041 13.4 0.0 0.047 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) SIR2_2 PF13289.1 gi|330833979|ref|YP_004408707.1| - 0.049 13.5 0.0 0.068 13.0 0.0 1.3 1 0 0 1 1 1 0 SIR2-like domain HTH_34 PF13601.1 gi|330833979|ref|YP_004408707.1| - 0.055 13.5 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|330833979|ref|YP_004408707.1| - 0.056 13.5 0.1 0.13 12.4 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|330833979|ref|YP_004408707.1| - 0.09 12.6 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4 PF04545.11 gi|330833979|ref|YP_004408707.1| - 0.11 11.8 0.1 0.24 10.7 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 EFG_IV PF03764.13 gi|330833980|ref|YP_004408708.1| - 0.013 15.0 0.0 0.02 14.4 0.0 1.3 1 1 0 1 1 1 0 Elongation factor G, domain IV DUF1508 PF07411.7 gi|330833980|ref|YP_004408708.1| - 0.23 10.9 0.7 1.9 7.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1508) ParA PF10609.4 gi|330833981|ref|YP_004408709.1| - 1.2e-31 108.4 0.1 3.2e-31 107.0 0.1 1.7 1 1 1 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|330833981|ref|YP_004408709.1| - 8.1e-18 64.5 0.0 1.1e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|330833981|ref|YP_004408709.1| - 5.8e-08 32.2 0.2 7.1e-05 22.1 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|330833981|ref|YP_004408709.1| - 1.8e-07 31.2 0.0 1.8e-05 24.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|330833981|ref|YP_004408709.1| - 6.3e-07 28.7 0.0 1.1e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|330833981|ref|YP_004408709.1| - 3e-06 26.4 3.5 2.1e-05 23.7 0.3 2.5 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|330833981|ref|YP_004408709.1| - 0.0004 19.9 0.1 0.00047 19.6 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain ArgK PF03308.11 gi|330833981|ref|YP_004408709.1| - 0.0011 17.7 0.2 0.0019 17.0 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_25 PF13481.1 gi|330833981|ref|YP_004408709.1| - 0.0014 18.0 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|330833981|ref|YP_004408709.1| - 0.0044 16.6 0.2 2.4 7.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|330833981|ref|YP_004408709.1| - 0.056 12.8 0.1 0.12 11.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein YhjQ PF06564.7 gi|330833981|ref|YP_004408709.1| - 0.12 11.6 0.1 0.34 10.2 0.0 1.7 2 0 0 2 2 2 0 YhjQ protein AAA_19 PF13245.1 gi|330833981|ref|YP_004408709.1| - 0.14 11.9 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_18 PF13238.1 gi|330833982|ref|YP_004408710.1| - 6.2e-17 62.1 0.5 8.9e-17 61.6 0.1 1.4 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|330833982|ref|YP_004408710.1| - 7.4e-14 52.6 0.1 1.2e-13 51.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|330833982|ref|YP_004408710.1| - 9.8e-05 22.2 0.3 0.00018 21.4 0.2 1.4 1 1 0 1 1 1 1 Shikimate kinase RuvB_N PF05496.7 gi|330833982|ref|YP_004408710.1| - 0.00049 19.2 0.0 0.00076 18.6 0.0 1.2 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|330833982|ref|YP_004408710.1| - 0.0028 17.5 0.0 0.01 15.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330833982|ref|YP_004408710.1| - 0.0034 17.5 0.1 0.011 15.9 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|330833982|ref|YP_004408710.1| - 0.0042 17.0 0.0 0.0076 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|330833982|ref|YP_004408710.1| - 0.0075 15.5 0.1 0.014 14.5 0.0 1.5 1 1 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|330833982|ref|YP_004408710.1| - 0.0077 15.3 0.0 0.026 13.6 0.0 2.1 1 1 0 1 1 1 1 Zeta toxin Rad17 PF03215.10 gi|330833982|ref|YP_004408710.1| - 0.0097 14.6 0.0 0.01 14.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein DUF2075 PF09848.4 gi|330833982|ref|YP_004408710.1| - 0.014 14.3 0.3 0.038 12.9 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|330833982|ref|YP_004408710.1| - 0.022 14.7 0.0 0.034 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|330833982|ref|YP_004408710.1| - 0.026 14.7 0.0 0.13 12.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase NTPase_1 PF03266.10 gi|330833982|ref|YP_004408710.1| - 0.034 13.8 0.4 0.18 11.4 0.0 2.1 1 1 1 2 2 2 0 NTPase Speriolin_C PF15059.1 gi|330833982|ref|YP_004408710.1| - 0.044 13.8 0.1 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 Speriolin C-terminus StbA PF06406.6 gi|330833982|ref|YP_004408710.1| - 0.048 12.5 0.8 0.7 8.7 0.0 1.9 1 1 1 2 2 2 0 StbA protein KaiC PF06745.8 gi|330833982|ref|YP_004408710.1| - 0.05 12.7 1.5 1.6 7.8 0.2 2.3 2 0 0 2 2 2 0 KaiC DUF1476 PF07345.6 gi|330833982|ref|YP_004408710.1| - 0.057 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1476) AAA_22 PF13401.1 gi|330833982|ref|YP_004408710.1| - 0.06 13.4 0.1 0.088 12.9 0.1 1.7 1 1 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.1 gi|330833982|ref|YP_004408710.1| - 0.082 12.8 0.1 0.14 12.0 0.0 1.6 1 1 0 1 1 1 0 Cytidylate kinase-like family ArsA_ATPase PF02374.10 gi|330833982|ref|YP_004408710.1| - 0.086 11.8 0.6 0.57 9.1 0.0 2.3 2 1 1 3 3 3 0 Anion-transporting ATPase AAA_26 PF13500.1 gi|330833982|ref|YP_004408710.1| - 0.097 12.2 1.0 0.24 10.9 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|330833982|ref|YP_004408710.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|330833982|ref|YP_004408710.1| - 0.12 12.1 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.1 gi|330833982|ref|YP_004408710.1| - 0.16 11.4 0.6 0.32 10.5 0.2 1.7 2 1 0 2 2 2 0 AAA domain TRC8_N PF13705.1 gi|330833983|ref|YP_004408711.1| - 0.14 10.7 1.3 0.13 10.7 0.9 1.1 1 0 0 1 1 1 0 TRC8 N-terminal domain DUF1056 PF06341.6 gi|330833983|ref|YP_004408711.1| - 0.24 11.4 2.6 0.82 9.7 1.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1056) DUF4227 PF14004.1 gi|330833983|ref|YP_004408711.1| - 1.1 9.2 4.3 6.8 6.6 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) Rhomboid PF01694.17 gi|330833984|ref|YP_004408712.1| - 1.8e-17 63.7 13.5 1.8e-17 63.7 9.4 1.9 2 0 0 2 2 2 1 Rhomboid family DUF2512 PF10710.4 gi|330833984|ref|YP_004408712.1| - 0.13 11.7 13.7 0.039 13.4 7.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2512) Peptidase_M50 PF02163.17 gi|330833985|ref|YP_004408713.1| - 8.1e-17 60.7 13.0 1.4e-16 60.0 9.0 1.4 1 0 0 1 1 1 1 Peptidase family M50 MMPL PF03176.10 gi|330833988|ref|YP_004408716.1| - 9e-59 198.8 13.1 5.3e-30 104.2 5.1 2.1 2 0 0 2 2 2 2 MMPL family Aldolase_2 PF10120.4 gi|330833989|ref|YP_004408717.1| - 2.7e-44 150.5 0.0 3.5e-44 150.1 0.0 1.1 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|330833989|ref|YP_004408717.1| - 0.0034 17.1 0.1 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_37 PF13744.1 gi|330833989|ref|YP_004408717.1| - 0.0035 17.1 0.0 0.0094 15.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|330833989|ref|YP_004408717.1| - 0.012 15.4 0.1 0.029 14.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|330833989|ref|YP_004408717.1| - 0.025 14.1 0.0 0.072 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain ORF6N PF10543.4 gi|330833989|ref|YP_004408717.1| - 0.093 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 ORF6N domain NurA PF09376.5 gi|330833990|ref|YP_004408718.1| - 1.1e-07 31.6 0.6 2e-05 24.1 0.1 2.2 1 1 1 2 2 2 2 NurA domain DUF87 PF01935.12 gi|330833991|ref|YP_004408719.1| - 1.5e-21 77.3 4.0 2.5e-21 76.5 1.6 1.9 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330833991|ref|YP_004408719.1| - 3e-14 53.1 0.6 4.1e-14 52.7 0.4 1.1 1 0 0 1 1 1 1 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|330833991|ref|YP_004408719.1| - 0.00025 20.5 1.7 0.034 13.6 0.0 2.5 2 1 0 2 2 2 2 FtsK/SpoIIIE family Zot PF05707.7 gi|330833991|ref|YP_004408719.1| - 0.0018 17.8 0.1 0.005 16.3 0.0 1.7 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T4SS-DNA_transf PF02534.9 gi|330833991|ref|YP_004408719.1| - 0.009 14.6 0.1 0.022 13.3 0.0 1.6 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer DEAD PF00270.24 gi|330833991|ref|YP_004408719.1| - 0.15 11.5 0.1 4.1 6.8 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase PCMT PF01135.14 gi|330833992|ref|YP_004408720.1| - 2.1e-34 118.8 0.0 2.6e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.15 gi|330833992|ref|YP_004408720.1| - 2.8e-07 29.8 0.0 3.7e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|330833992|ref|YP_004408720.1| - 6e-06 26.2 0.0 8.7e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330833992|ref|YP_004408720.1| - 1e-05 26.0 0.0 1.4e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330833992|ref|YP_004408720.1| - 7.1e-05 22.4 0.0 9.9e-05 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330833992|ref|YP_004408720.1| - 9.1e-05 22.2 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330833992|ref|YP_004408720.1| - 0.0007 18.8 0.0 0.00089 18.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.7 gi|330833992|ref|YP_004408720.1| - 0.0026 18.2 0.0 0.0046 17.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330833992|ref|YP_004408720.1| - 0.0098 15.2 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|330833992|ref|YP_004408720.1| - 0.021 15.1 0.0 0.035 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|330833992|ref|YP_004408720.1| - 0.028 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein CMAS PF02353.15 gi|330833992|ref|YP_004408720.1| - 0.035 13.1 0.1 0.055 12.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.1 gi|330833992|ref|YP_004408720.1| - 0.066 14.0 0.0 0.098 13.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_3 PF01596.12 gi|330833992|ref|YP_004408720.1| - 0.068 12.2 0.0 0.097 11.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_12 PF08242.7 gi|330833992|ref|YP_004408720.1| - 0.086 13.3 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain tRNA-synt_2 PF00152.15 gi|330833993|ref|YP_004408721.1| - 4.4e-96 321.5 0.1 5.4e-96 321.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|330833993|ref|YP_004408721.1| - 7.3e-12 44.9 0.1 1.5e-11 43.9 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|330833993|ref|YP_004408721.1| - 4e-08 32.7 0.3 2.8e-05 23.4 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|330833993|ref|YP_004408721.1| - 0.0021 17.6 0.1 1.7 8.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetase class II core domain (G, H, P, S and T) Peptidase_M50 PF02163.17 gi|330833994|ref|YP_004408722.1| - 6.4e-23 80.7 1.1 6.4e-23 80.7 0.8 1.9 2 1 0 2 2 2 1 Peptidase family M50 PDZ PF00595.19 gi|330833994|ref|YP_004408722.1| - 4.2e-08 33.2 0.0 9.9e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) PDZ_2 PF13180.1 gi|330833994|ref|YP_004408722.1| - 3.1e-06 26.9 0.0 5.7e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.1 gi|330833994|ref|YP_004408722.1| - 0.045 13.5 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain NTP_transf_2 PF01909.18 gi|330833995|ref|YP_004408723.1| - 1.6e-06 28.3 0.2 2.6e-06 27.6 0.1 1.9 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF1122 PF06557.6 gi|330833996|ref|YP_004408724.1| - 1.2e-24 86.4 0.0 1.2e-24 86.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Radical_SAM PF04055.16 gi|330833997|ref|YP_004408725.1| - 8.3e-09 35.8 0.0 1.5e-06 28.4 0.0 2.5 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|330833997|ref|YP_004408725.1| - 1.3e-08 34.8 0.0 4e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330833997|ref|YP_004408725.1| - 9.5e-07 29.0 0.0 4.4e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain eRF1_1 PF03463.10 gi|330833998|ref|YP_004408726.1| - 4e-25 87.9 0.9 9.4e-25 86.7 0.5 1.7 2 0 0 2 2 2 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|330833998|ref|YP_004408726.1| - 2.1e-20 73.0 1.0 4.7e-20 71.9 0.1 2.1 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|330833998|ref|YP_004408726.1| - 5.1e-12 46.2 1.2 1.3e-11 44.9 0.2 2.2 2 1 0 2 2 2 1 eRF1 domain 2 DUF3570 PF12094.3 gi|330833998|ref|YP_004408726.1| - 0.012 14.4 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3570) Acetyltransf_1 PF00583.19 gi|330833999|ref|YP_004408727.1| - 1.5e-15 56.9 0.1 2e-15 56.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|330833999|ref|YP_004408727.1| - 9.8e-12 45.0 0.0 1.3e-11 44.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330833999|ref|YP_004408727.1| - 1.1e-09 38.3 0.2 2e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330833999|ref|YP_004408727.1| - 6.8e-09 35.8 0.1 8.8e-09 35.4 0.1 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330833999|ref|YP_004408727.1| - 3.4e-05 23.5 0.1 4.6e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|330833999|ref|YP_004408727.1| - 0.00012 21.9 0.0 0.00034 20.4 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|330833999|ref|YP_004408727.1| - 0.024 14.5 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|330833999|ref|YP_004408727.1| - 0.058 12.9 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330833999|ref|YP_004408727.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|330833999|ref|YP_004408727.1| - 0.13 11.5 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 DNA_pol_B PF00136.16 gi|330834000|ref|YP_004408728.1| - 8e-91 305.1 0.5 1.3e-90 304.4 0.3 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|330834000|ref|YP_004408728.1| - 2.9e-40 138.1 4.3 2.9e-40 138.1 3.0 3.0 3 1 0 3 3 3 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|330834000|ref|YP_004408728.1| - 1.7e-12 47.4 0.4 4.2e-12 46.1 0.3 1.7 1 0 0 1 1 1 1 RNase_H superfamily DUF3395 PF11875.3 gi|330834000|ref|YP_004408728.1| - 0.1 12.2 0.2 0.6 9.7 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3395) Toprim_4 PF13662.1 gi|330834001|ref|YP_004408729.1| - 2.8e-09 36.8 0.1 6.4e-09 35.7 0.1 1.6 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|330834001|ref|YP_004408729.1| - 0.00033 20.5 4.7 0.00064 19.6 0.1 3.0 3 0 0 3 3 3 1 Toprim domain Toprim_2 PF13155.1 gi|330834001|ref|YP_004408729.1| - 0.064 13.5 0.0 0.17 12.2 0.0 1.7 1 0 0 1 1 1 0 Toprim-like tRNA-synt_1b PF00579.20 gi|330834002|ref|YP_004408730.1| - 5.8e-50 170.0 0.7 2.3e-36 125.4 0.0 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (W and Y) UPF0047 PF01894.12 gi|330834004|ref|YP_004408732.1| - 6.7e-40 135.5 0.1 7.7e-40 135.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 AIRS PF00586.19 gi|330834005|ref|YP_004408733.1| - 1.9e-10 40.8 0.0 4.1e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|330834005|ref|YP_004408733.1| - 4.2e-10 39.8 0.1 7.5e-10 39.0 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Ribosomal_S13 PF00416.17 gi|330834006|ref|YP_004408734.1| - 1.3e-36 125.2 0.3 1.7e-36 124.9 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.1 gi|330834006|ref|YP_004408734.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain S4 PF01479.20 gi|330834007|ref|YP_004408735.1| - 2.3e-17 62.1 0.3 4.6e-17 61.1 0.2 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|330834007|ref|YP_004408735.1| - 0.00046 20.5 1.3 0.0011 19.3 0.2 1.9 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|330834008|ref|YP_004408736.1| - 5.9e-43 145.5 0.1 6.9e-43 145.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|330834009|ref|YP_004408737.1| - 5.8e-30 103.7 0.0 1.1e-29 102.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|330834009|ref|YP_004408737.1| - 5.3e-10 38.2 0.0 6.6e-10 37.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.1 gi|330834009|ref|YP_004408737.1| - 9.7e-08 32.1 9.2 2.3e-06 27.7 3.8 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834009|ref|YP_004408737.1| - 0.0001 22.6 8.2 0.0022 18.3 3.1 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330834009|ref|YP_004408737.1| - 0.0044 16.7 13.5 0.0058 16.3 1.3 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain RNA_pol_L_2 PF13656.1 gi|330834009|ref|YP_004408737.1| - 0.0081 15.5 0.0 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_11 PF13247.1 gi|330834009|ref|YP_004408737.1| - 0.024 14.5 2.1 0.024 14.5 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330834009|ref|YP_004408737.1| - 0.03 13.9 3.1 0.03 13.9 2.2 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330834009|ref|YP_004408737.1| - 0.14 12.9 11.8 2.1 9.1 1.0 3.3 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|330834009|ref|YP_004408737.1| - 0.18 11.6 12.9 0.19 11.6 3.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330834009|ref|YP_004408737.1| - 0.22 12.1 6.1 1.6 9.3 0.2 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|330834009|ref|YP_004408737.1| - 0.4 10.7 11.7 9.3 6.3 8.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330834009|ref|YP_004408737.1| - 1.1 9.6 11.0 1.4 9.2 0.9 3.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Ribosomal_L18e PF00828.14 gi|330834010|ref|YP_004408738.1| - 1.4e-13 51.3 0.7 1.7e-13 51.0 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|330834011|ref|YP_004408739.1| - 5.5e-25 87.8 0.0 6.8e-25 87.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|330834012|ref|YP_004408740.1| - 3.1e-31 108.1 0.2 3.5e-31 107.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|330834013|ref|YP_004408741.1| - 4.6e-29 100.2 0.4 5.1e-29 100.0 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|330834013|ref|YP_004408741.1| - 0.0035 17.3 1.6 0.0079 16.2 1.1 1.6 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.15 gi|330834014|ref|YP_004408742.1| - 1.2e-38 132.5 0.0 3.4e-18 65.6 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.1 gi|330834014|ref|YP_004408742.1| - 0.048 13.0 0.1 0.066 12.5 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain DUF3945 PF13101.1 gi|330834014|ref|YP_004408742.1| - 0.36 10.1 2.9 0.62 9.3 1.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3945) Memo PF01875.12 gi|330834015|ref|YP_004408743.1| - 1.6e-78 263.3 0.0 1.8e-78 263.1 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein AA_kinase PF00696.23 gi|330834017|ref|YP_004408745.1| - 8.6e-23 81.1 0.1 1.1e-22 80.7 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|330834018|ref|YP_004408746.1| - 6.3e-26 91.0 0.1 1.3e-17 63.6 0.0 2.0 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|330834018|ref|YP_004408746.1| - 2e-05 23.6 0.7 0.00079 18.4 0.1 2.7 2 1 1 3 3 3 1 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|330834018|ref|YP_004408746.1| - 0.00043 19.3 0.3 0.00093 18.2 0.2 1.6 1 1 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.10 gi|330834018|ref|YP_004408746.1| - 0.052 12.6 0.3 0.098 11.7 0.2 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase polyprenyl_synt PF00348.12 gi|330834019|ref|YP_004408747.1| - 6.4e-76 254.6 0.0 8.1e-76 254.2 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Glycos_transf_4 PF00953.16 gi|330834020|ref|YP_004408748.1| - 1.5e-31 109.3 18.8 1.5e-31 109.3 13.0 2.5 3 0 0 3 3 3 1 Glycosyl transferase family 4 DUF2953 PF11167.3 gi|330834020|ref|YP_004408748.1| - 0.026 14.4 0.3 0.22 11.4 0.0 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2953) Ribosomal_L7Ae PF01248.21 gi|330834021|ref|YP_004408749.1| - 2.9e-30 103.6 0.9 3.5e-30 103.3 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF1269 PF06897.7 gi|330834021|ref|YP_004408749.1| - 0.0017 18.3 0.5 1.3 9.0 0.0 2.3 2 1 0 2 2 2 2 Protein of unknown function (DUF1269) RNase_P_pop3 PF08228.6 gi|330834021|ref|YP_004408749.1| - 0.035 13.9 0.0 0.038 13.8 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 PELOTA_1 PF15608.1 gi|330834021|ref|YP_004408749.1| - 0.048 13.4 0.0 0.073 12.8 0.0 1.3 1 0 0 1 1 1 0 PELOTA RNA binding domain YtxH PF12732.2 gi|330834021|ref|YP_004408749.1| - 0.14 12.5 2.7 0.69 10.3 0.1 2.1 2 0 0 2 2 2 0 YtxH-like protein tRNA-synt_1c PF00749.16 gi|330834022|ref|YP_004408750.1| - 1.3e-77 260.5 0.0 2e-77 259.9 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|330834022|ref|YP_004408750.1| - 1.5e-21 76.8 0.0 3.9e-21 75.5 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain CM_2 PF01817.16 gi|330834022|ref|YP_004408750.1| - 0.055 13.5 2.7 1.6 8.8 0.0 3.5 3 1 1 4 4 4 0 Chorismate mutase type II Hydrolase_3 PF08282.7 gi|330834023|ref|YP_004408751.1| - 3.7e-27 95.5 1.1 1.5e-13 50.9 0.7 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330834023|ref|YP_004408751.1| - 3e-08 34.0 1.7 1.8e-07 31.5 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|330834023|ref|YP_004408751.1| - 2.1e-07 30.4 0.0 3.7e-05 23.1 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|330834023|ref|YP_004408751.1| - 1.6e-06 28.7 0.3 8.2e-05 23.1 0.2 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|330834023|ref|YP_004408751.1| - 0.0033 16.3 0.0 1.5 7.6 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase Hydrolase_6 PF13344.1 gi|330834023|ref|YP_004408751.1| - 0.053 13.4 0.0 0.14 12.0 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HD PF01966.17 gi|330834024|ref|YP_004408752.1| - 3.1e-09 36.9 0.0 1.1e-08 35.1 0.0 1.9 3 0 0 3 3 3 1 HD domain RNA_POL_M_15KD PF02150.11 gi|330834025|ref|YP_004408753.1| - 0.042 13.5 0.1 0.078 12.6 0.1 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit RNHCP PF12647.2 gi|330834025|ref|YP_004408753.1| - 0.044 13.6 0.0 0.051 13.3 0.0 1.1 1 0 0 1 1 1 0 RNHCP domain DUF2387 PF09526.5 gi|330834025|ref|YP_004408753.1| - 0.075 12.9 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) PDZ_2 PF13180.1 gi|330834025|ref|YP_004408753.1| - 0.08 12.8 0.0 0.081 12.8 0.0 1.1 1 0 0 1 1 1 0 PDZ domain DNA_RNApol_7kD PF03604.8 gi|330834025|ref|YP_004408753.1| - 0.097 12.1 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF1512 PF07431.7 gi|330834026|ref|YP_004408754.1| - 1.3e-128 428.7 11.0 1.4e-128 428.5 7.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Peptidase_M24 PF00557.19 gi|330834027|ref|YP_004408755.1| - 4.9e-43 147.1 0.1 5.7e-43 146.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_2 PF12706.2 gi|330834028|ref|YP_004408756.1| - 1.6e-15 57.1 0.1 2e-15 56.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|330834028|ref|YP_004408756.1| - 8.5e-15 54.8 0.1 1.2e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330834028|ref|YP_004408756.1| - 8.5e-09 35.3 0.1 1.7e-08 34.3 0.0 1.4 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily tRNA-synt_2d PF01409.15 gi|330834029|ref|YP_004408757.1| - 3.9e-78 262.0 0.0 5.2e-78 261.6 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|330834029|ref|YP_004408757.1| - 4.5e-08 32.2 0.7 0.0075 15.0 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_24 PF13412.1 gi|330834029|ref|YP_004408757.1| - 1.3e-07 30.9 0.2 2.7e-07 29.8 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330834029|ref|YP_004408757.1| - 1.7e-06 27.6 3.4 3.6e-05 23.3 0.1 3.2 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330834029|ref|YP_004408757.1| - 3e-06 27.4 0.9 4.1e-05 23.8 0.0 2.7 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|330834029|ref|YP_004408757.1| - 0.00033 20.6 0.1 0.0011 18.9 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|330834029|ref|YP_004408757.1| - 0.0082 16.0 1.6 0.026 14.4 0.2 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|330834029|ref|YP_004408757.1| - 0.009 15.5 0.0 0.11 12.1 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|330834029|ref|YP_004408757.1| - 0.015 14.9 0.3 0.044 13.4 0.2 1.9 1 0 0 1 1 1 0 HTH domain tRNA-synt_2b PF00587.20 gi|330834029|ref|YP_004408757.1| - 0.03 13.8 0.1 0.052 13.1 0.1 1.4 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) HTH_45 PF14947.1 gi|330834029|ref|YP_004408757.1| - 0.041 13.6 0.7 0.19 11.5 0.1 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|330834029|ref|YP_004408757.1| - 0.097 12.3 0.5 2.3 7.9 0.0 3.1 3 0 0 3 3 3 0 MarR family HTH_9 PF08221.6 gi|330834029|ref|YP_004408757.1| - 0.15 11.9 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Mga PF08280.6 gi|330834029|ref|YP_004408757.1| - 0.17 11.6 0.6 0.42 10.4 0.2 1.8 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|330834029|ref|YP_004408757.1| - 0.2 11.3 0.9 0.46 10.2 0.1 2.1 2 0 0 2 2 2 0 MarR family B5 PF03484.10 gi|330834030|ref|YP_004408758.1| - 1.6e-18 66.3 0.4 2.4e-16 59.3 0.1 2.5 2 0 0 2 2 2 2 tRNA synthetase B5 domain B3_4 PF03483.12 gi|330834030|ref|YP_004408758.1| - 5.8e-13 48.6 0.0 1.1e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain Abhydrolase_6 PF12697.2 gi|330834031|ref|YP_004408759.1| - 8.1e-31 107.6 0.0 9.3e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|330834031|ref|YP_004408759.1| - 7e-15 55.0 0.0 9.4e-15 54.6 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|330834031|ref|YP_004408759.1| - 3.8e-11 42.9 0.1 3.3e-09 36.6 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|330834031|ref|YP_004408759.1| - 9e-05 22.2 0.1 0.00031 20.5 0.0 1.9 2 0 0 2 2 2 1 Putative lysophospholipase MoCF_biosynth PF00994.19 gi|330834032|ref|YP_004408760.1| - 2.1e-30 105.0 0.3 4.2e-30 104.0 0.0 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain Ribosomal_L29 PF00831.18 gi|330834032|ref|YP_004408760.1| - 0.13 11.9 4.3 0.13 11.9 0.1 2.7 2 1 0 2 2 2 0 Ribosomal L29 protein Aminotran_1_2 PF00155.16 gi|330834033|ref|YP_004408761.1| - 1.1e-37 129.9 0.0 1.2e-37 129.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|330834033|ref|YP_004408761.1| - 1.6e-10 40.1 0.0 2.8e-10 39.3 0.0 1.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase ADH_N PF08240.7 gi|330834034|ref|YP_004408762.1| - 0.0022 17.7 0.1 0.02 14.6 0.1 2.1 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain HTH_Tnp_ISL3 PF13542.1 gi|330834035|ref|YP_004408763.1| - 7.1e-05 21.8 0.0 0.00013 21.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.17 gi|330834035|ref|YP_004408763.1| - 0.00031 20.5 0.1 0.00072 19.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|330834035|ref|YP_004408763.1| - 0.00046 19.7 0.8 0.0017 17.9 0.0 2.3 3 0 0 3 3 3 1 Homeodomain-like domain HTH_28 PF13518.1 gi|330834035|ref|YP_004408763.1| - 0.00081 19.3 0.5 0.002 18.0 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain IF2_N PF04760.10 gi|330834035|ref|YP_004408763.1| - 0.0011 18.6 0.0 0.0039 16.7 0.0 1.9 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_Tnp_1 PF01527.15 gi|330834035|ref|YP_004408763.1| - 0.0029 17.5 0.5 0.0059 16.5 0.0 1.8 2 0 0 2 2 2 1 Transposase HTH_19 PF12844.2 gi|330834035|ref|YP_004408763.1| - 0.0033 17.4 0.1 0.0033 17.4 0.1 1.8 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|330834035|ref|YP_004408763.1| - 0.0036 16.8 1.0 0.014 14.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|330834035|ref|YP_004408763.1| - 0.0048 16.7 0.2 0.022 14.5 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_6 PF01418.12 gi|330834035|ref|YP_004408763.1| - 0.013 15.2 0.1 0.054 13.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family HTH_11 PF08279.7 gi|330834035|ref|YP_004408763.1| - 0.013 15.1 1.6 0.03 13.9 0.1 2.2 2 0 0 2 2 2 0 HTH domain NUMOD1 PF07453.8 gi|330834035|ref|YP_004408763.1| - 0.019 14.7 0.0 0.064 13.1 0.0 1.9 1 1 1 2 2 2 0 NUMOD1 domain HTH_26 PF13443.1 gi|330834035|ref|YP_004408763.1| - 0.021 15.0 0.0 0.048 13.8 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_29 PF13551.1 gi|330834035|ref|YP_004408763.1| - 0.045 13.8 0.1 0.1 12.7 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix DUF2848 PF11010.3 gi|330834035|ref|YP_004408763.1| - 0.049 13.1 0.0 0.062 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2848) Trp_repressor PF01371.14 gi|330834035|ref|YP_004408763.1| - 0.066 13.1 0.7 0.34 10.8 0.0 2.3 1 1 0 2 2 2 0 Trp repressor protein CENP-B_N PF04218.8 gi|330834035|ref|YP_004408763.1| - 0.067 12.6 0.5 0.33 10.4 0.0 2.1 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain TetR_N PF00440.18 gi|330834035|ref|YP_004408763.1| - 0.074 12.6 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family MarR_2 PF12802.2 gi|330834035|ref|YP_004408763.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|330834035|ref|YP_004408763.1| - 0.22 10.9 2.3 0.37 10.2 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PNPase PF03726.9 gi|330834035|ref|YP_004408763.1| - 0.26 11.5 2.7 0.28 11.4 0.8 1.7 2 0 0 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain Unstab_antitox PF09720.5 gi|330834035|ref|YP_004408763.1| - 1.5 8.5 5.9 7.1 6.4 4.1 2.1 1 1 0 1 1 1 0 Putative addiction module component TelA PF05816.6 gi|330834036|ref|YP_004408764.1| - 0.0067 15.1 0.1 0.0084 14.8 0.0 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) M11L PF11099.3 gi|330834036|ref|YP_004408764.1| - 0.035 13.8 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Apoptosis regulator M11L like DUF2192 PF09958.4 gi|330834037|ref|YP_004408765.1| - 5.1e-85 284.3 1.8 5.7e-85 284.2 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) HrcA_DNA-bdg PF03444.10 gi|330834038|ref|YP_004408766.1| - 6.4e-35 118.4 2.2 1.2e-34 117.5 0.1 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.23 gi|330834038|ref|YP_004408766.1| - 9.2e-28 95.7 2.7 3e-14 52.5 1.0 2.4 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.15 gi|330834038|ref|YP_004408766.1| - 1.7e-08 34.4 0.1 9.8e-08 32.0 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.7 gi|330834038|ref|YP_004408766.1| - 0.0084 15.7 0.1 0.024 14.2 0.1 1.8 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|330834038|ref|YP_004408766.1| - 0.056 13.1 1.5 0.41 10.3 0.1 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Sigma70_r4 PF04545.11 gi|330834038|ref|YP_004408766.1| - 0.085 12.1 0.5 24 4.3 0.0 3.1 2 2 1 3 3 3 0 Sigma-70, region 4 Penicillinase_R PF03965.11 gi|330834038|ref|YP_004408766.1| - 0.099 12.7 0.0 20 5.2 0.0 2.4 2 0 0 2 2 2 0 Penicillinase repressor TFIIH_BTF_p62_N PF08567.6 gi|330834038|ref|YP_004408766.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 TFIIH p62 subunit, N-terminal domain DEAD_assoc PF08494.6 gi|330834039|ref|YP_004408767.1| - 3.8e-52 176.7 0.7 7.3e-52 175.8 0.5 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|330834039|ref|YP_004408767.1| - 2.9e-30 104.9 0.2 1.2e-28 99.6 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330834039|ref|YP_004408767.1| - 1.6e-13 50.3 0.0 1.3e-12 47.3 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330834039|ref|YP_004408767.1| - 2.1e-08 34.2 0.0 1e-07 31.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|330834039|ref|YP_004408767.1| - 0.024 14.7 1.2 8.1 6.5 0.1 3.7 2 2 0 2 2 2 0 AAA domain Glyco_tranf_2_3 PF13641.1 gi|330834040|ref|YP_004408768.1| - 1.6e-28 100.0 0.0 2.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330834040|ref|YP_004408768.1| - 2.8e-21 76.1 0.1 2.8e-21 76.1 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|330834040|ref|YP_004408768.1| - 9.1e-16 58.0 0.0 1.3e-15 57.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|330834040|ref|YP_004408768.1| - 7.4e-12 44.8 0.0 2e-11 43.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|330834040|ref|YP_004408768.1| - 8.8e-07 28.2 0.0 1.3e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.9 gi|330834040|ref|YP_004408768.1| - 0.0011 17.4 1.3 0.0023 16.3 0.9 1.4 1 1 0 1 1 1 1 Cellulose synthase ParBc PF02195.13 gi|330834041|ref|YP_004408769.1| - 9.8e-11 41.6 0.2 1.5e-10 41.0 0.1 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|330834041|ref|YP_004408769.1| - 0.012 14.1 0.4 0.11 10.9 0.1 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.6 gi|330834041|ref|YP_004408769.1| - 0.024 14.4 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative ParB-like nuclease HhH-GPD PF00730.20 gi|330834042|ref|YP_004408770.1| - 3.2e-18 65.9 0.0 4.6e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|330834042|ref|YP_004408770.1| - 0.0051 16.4 0.3 0.018 14.7 0.0 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|330834042|ref|YP_004408770.1| - 0.016 15.3 6.9 0.028 14.5 4.8 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III PMEI PF04043.10 gi|330834042|ref|YP_004408770.1| - 0.021 14.7 0.0 5 7.0 0.0 2.3 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor HHH_5 PF14520.1 gi|330834042|ref|YP_004408770.1| - 0.092 12.9 0.1 0.17 12.0 0.0 1.5 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF328 PF03883.9 gi|330834042|ref|YP_004408770.1| - 0.15 11.3 0.0 11 5.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF328) HTH_45 PF14947.1 gi|330834043|ref|YP_004408771.1| - 1.2e-06 28.2 0.0 1.5e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.7 gi|330834043|ref|YP_004408771.1| - 0.0003 19.0 0.2 0.00036 18.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.9 gi|330834043|ref|YP_004408771.1| - 0.0035 17.0 0.1 0.0085 15.8 0.1 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF3116 PF11313.3 gi|330834043|ref|YP_004408771.1| - 0.0072 15.9 0.0 0.0089 15.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3116) DUF2250 PF10007.4 gi|330834043|ref|YP_004408771.1| - 0.011 15.6 0.1 4.3 7.3 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.1 gi|330834043|ref|YP_004408771.1| - 0.011 15.3 0.0 0.011 15.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.1 gi|330834043|ref|YP_004408771.1| - 0.025 14.4 0.0 0.028 14.2 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation DUF1495 PF07381.6 gi|330834043|ref|YP_004408771.1| - 0.03 13.9 0.1 0.045 13.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|330834043|ref|YP_004408771.1| - 0.076 12.7 0.2 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|330834043|ref|YP_004408771.1| - 0.13 12.4 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Mrr N-terminal domain YcfA PF07927.7 gi|330834043|ref|YP_004408771.1| - 0.14 12.0 0.4 0.27 11.1 0.2 1.6 1 1 0 1 1 1 0 YcfA-like protein Methyltransf_18 PF12847.2 gi|330834044|ref|YP_004408772.1| - 4.1e-05 24.1 0.0 0.0005 20.6 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330834044|ref|YP_004408772.1| - 5.5e-05 22.8 0.1 0.00059 19.4 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330834044|ref|YP_004408772.1| - 0.0012 18.5 0.0 0.0019 17.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330834044|ref|YP_004408772.1| - 0.0014 19.1 0.0 0.0032 17.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain RrnaAD PF00398.15 gi|330834044|ref|YP_004408772.1| - 0.0048 15.9 0.0 0.0067 15.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|330834044|ref|YP_004408772.1| - 0.0067 15.9 0.0 0.066 12.7 0.0 1.9 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|330834044|ref|YP_004408772.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.14 gi|330834044|ref|YP_004408772.1| - 0.028 14.3 0.0 0.054 13.4 0.0 1.4 2 0 0 2 2 2 0 FtsJ-like methyltransferase CMAS PF02353.15 gi|330834044|ref|YP_004408772.1| - 0.074 12.1 0.0 0.23 10.4 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase NhaB PF06450.7 gi|330834045|ref|YP_004408773.1| - 0.087 11.4 0.1 0.082 11.5 0.1 1.0 1 0 0 1 1 1 0 Bacterial Na+/H+ antiporter B (NhaB) DUF1628 PF07790.6 gi|330834046|ref|YP_004408774.1| - 0.0012 19.5 0.6 0.0022 18.6 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF1573 PF07610.6 gi|330834046|ref|YP_004408774.1| - 0.072 12.6 0.4 1.3 8.6 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) T2SE PF00437.15 gi|330834048|ref|YP_004408776.1| - 2.8e-38 131.3 0.0 4.2e-38 130.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|330834048|ref|YP_004408776.1| - 5.2e-05 22.8 0.1 0.00099 18.6 0.0 2.6 2 1 0 2 2 2 1 AAA-like domain ABC_tran PF00005.22 gi|330834048|ref|YP_004408776.1| - 8.2e-05 22.9 0.0 0.00033 20.9 0.0 2.0 2 0 0 2 2 1 1 ABC transporter FtsK_SpoIIIE PF01580.13 gi|330834048|ref|YP_004408776.1| - 0.0002 20.9 0.0 0.00043 19.8 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_21 PF13304.1 gi|330834048|ref|YP_004408776.1| - 0.00027 21.0 0.3 0.00027 21.0 0.2 2.9 3 1 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|330834048|ref|YP_004408776.1| - 0.00062 20.5 0.0 0.0025 18.6 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330834048|ref|YP_004408776.1| - 0.001 18.5 0.2 0.003 17.0 0.0 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain cobW PF02492.14 gi|330834048|ref|YP_004408776.1| - 0.0021 17.5 0.0 0.0056 16.1 0.0 1.7 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|330834048|ref|YP_004408776.1| - 0.0034 17.5 0.0 0.012 15.7 0.0 2.0 1 0 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|330834048|ref|YP_004408776.1| - 0.0048 16.7 0.2 0.035 13.9 0.0 2.3 2 0 0 2 2 2 1 Dynamin family MMR_HSR1 PF01926.18 gi|330834048|ref|YP_004408776.1| - 0.0059 16.5 0.3 0.028 14.3 0.0 2.3 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|330834048|ref|YP_004408776.1| - 0.0066 16.9 0.0 0.02 15.3 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein MobB PF03205.9 gi|330834048|ref|YP_004408776.1| - 0.007 16.0 0.0 0.029 14.0 0.0 2.1 2 0 0 2 2 1 1 Molybdopterin guanine dinucleotide synthesis protein B Pox_A32 PF04665.7 gi|330834048|ref|YP_004408776.1| - 0.0083 15.4 0.3 0.026 13.8 0.0 1.9 2 0 0 2 2 2 1 Poxvirus A32 protein DUF2853 PF11015.3 gi|330834048|ref|YP_004408776.1| - 0.013 15.9 0.1 2.9 8.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2853) DUF87 PF01935.12 gi|330834048|ref|YP_004408776.1| - 0.018 14.8 0.8 0.23 11.2 0.1 2.7 2 1 0 2 2 2 0 Domain of unknown function DUF87 AAA_23 PF13476.1 gi|330834048|ref|YP_004408776.1| - 0.027 14.8 12.1 0.012 15.9 4.5 2.6 2 2 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|330834048|ref|YP_004408776.1| - 0.036 13.9 0.3 0.33 10.8 0.0 2.6 3 0 0 3 3 3 0 AAA domain Zeta_toxin PF06414.7 gi|330834048|ref|YP_004408776.1| - 0.038 13.0 0.0 0.12 11.4 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.1 gi|330834048|ref|YP_004408776.1| - 0.04 13.7 0.0 0.086 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain ResIII PF04851.10 gi|330834048|ref|YP_004408776.1| - 0.081 12.7 0.0 0.31 10.8 0.0 1.7 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.1 gi|330834048|ref|YP_004408776.1| - 0.085 12.9 0.0 10 6.1 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain ATP_bind_1 PF03029.12 gi|330834048|ref|YP_004408776.1| - 0.086 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TrwB_AAD_bind PF10412.4 gi|330834048|ref|YP_004408776.1| - 0.099 11.2 0.0 0.16 10.5 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.1 gi|330834048|ref|YP_004408776.1| - 0.11 12.5 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|330834048|ref|YP_004408776.1| - 0.12 11.5 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|330834048|ref|YP_004408776.1| - 0.14 11.3 0.0 0.37 9.9 0.0 1.7 2 0 0 2 2 1 0 RecF/RecN/SMC N terminal domain TP_methylase PF00590.15 gi|330834050|ref|YP_004408778.1| - 4.7e-24 85.2 0.0 5.9e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.12 gi|330834051|ref|YP_004408779.1| - 2.7e-78 262.5 1.3 3.9e-78 262.0 0.9 1.2 1 0 0 1 1 1 1 CbiD Nol1_Nop2_Fmu PF01189.12 gi|330834052|ref|YP_004408780.1| - 2.2e-20 73.1 0.0 2.9e-20 72.8 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family CbiC PF02570.10 gi|330834053|ref|YP_004408781.1| - 2.2e-32 112.1 0.0 4.2e-31 107.9 0.0 2.0 1 1 0 1 1 1 1 Precorrin-8X methylmutase Bac_export_3 PF01313.14 gi|330834053|ref|YP_004408781.1| - 0.46 10.2 2.9 16 5.2 0.0 2.2 2 0 0 2 2 2 0 Bacterial export proteins, family 3 VitK2_biosynth PF02621.9 gi|330834055|ref|YP_004408783.1| - 0.0089 15.2 0.0 0.02 14.1 0.0 1.5 1 1 0 1 1 1 1 Menaquinone biosynthesis Pyr_redox_2 PF07992.9 gi|330834056|ref|YP_004408784.1| - 5.9e-05 23.0 0.0 0.023 14.5 0.0 2.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834056|ref|YP_004408784.1| - 0.0073 15.2 0.1 0.12 11.2 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase UbiA PF01040.13 gi|330834058|ref|YP_004408786.1| - 2.7e-29 102.1 14.5 3.1e-29 101.9 10.0 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family HMGL-like PF00682.14 gi|330834059|ref|YP_004408787.1| - 4.5e-46 157.4 0.0 6.8e-46 156.8 0.0 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|330834059|ref|YP_004408787.1| - 2.6e-22 79.0 0.0 5e-22 78.1 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain E3_UbLigase_EDD PF11547.3 gi|330834059|ref|YP_004408787.1| - 0.032 13.7 0.0 4.8 6.7 0.0 2.5 2 0 0 2 2 2 0 E3 ubiquitin ligase EDD Alpha-L-AF_C PF06964.7 gi|330834060|ref|YP_004408788.1| - 0.074 12.8 0.1 0.095 12.4 0.1 1.1 1 0 0 1 1 1 0 Alpha-L-arabinofuranosidase C-terminus Peripla_BP_2 PF01497.13 gi|330834061|ref|YP_004408789.1| - 2.1e-19 69.6 0.0 2.9e-19 69.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TP_methylase PF00590.15 gi|330834062|ref|YP_004408790.1| - 3.2e-27 95.6 0.0 3.7e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Gp58 PF07902.6 gi|330834062|ref|YP_004408790.1| - 0.013 13.7 1.3 0.018 13.2 0.9 1.1 1 0 0 1 1 1 0 gp58-like protein Radical_SAM PF04055.16 gi|330834062|ref|YP_004408790.1| - 0.031 14.4 0.0 0.059 13.5 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily CbiG_N PF11760.3 gi|330834063|ref|YP_004408791.1| - 6.3e-19 67.4 0.2 1.7e-17 62.8 0.0 2.3 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|330834063|ref|YP_004408791.1| - 1.3e-14 54.4 0.0 2.2e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CbiG_mid PF11761.3 gi|330834063|ref|YP_004408791.1| - 0.0094 16.1 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Cobalamin biosynthesis central region Arc_PepC_II PF06847.6 gi|330834064|ref|YP_004408792.1| - 1.1e-17 64.1 0.0 2.1e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|330834064|ref|YP_004408792.1| - 2.7e-06 27.5 8.7 2.7e-06 27.5 6.0 1.8 2 0 0 2 2 2 1 Type IV leader peptidase family CobN-Mg_chel PF02514.11 gi|330834065|ref|YP_004408793.1| - 0 1079.8 0.0 0 1075.6 0.0 2.0 1 1 0 1 1 1 1 CobN/Magnesium Chelatase VWA_2 PF13519.1 gi|330834066|ref|YP_004408794.1| - 1.8e-16 60.7 0.0 3.2e-16 59.9 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|330834066|ref|YP_004408794.1| - 1.6e-12 47.0 0.2 9.1e-07 28.2 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|330834066|ref|YP_004408794.1| - 2.1e-12 47.1 0.5 3.9e-12 46.2 0.3 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|330834066|ref|YP_004408794.1| - 6.3e-11 42.1 0.1 3.2e-06 26.9 0.0 2.9 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|330834066|ref|YP_004408794.1| - 8.5e-08 31.3 3.5 3.7e-07 29.2 0.7 2.9 2 1 0 2 2 2 1 MCM2/3/5 family VWA_CoxE PF05762.9 gi|330834066|ref|YP_004408794.1| - 2.9e-05 23.3 0.1 6.4e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein Mg_chelatase_2 PF13335.1 gi|330834066|ref|YP_004408794.1| - 0.00013 22.2 0.3 0.00035 20.8 0.2 1.7 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|330834066|ref|YP_004408794.1| - 0.00021 21.5 0.0 0.0013 18.9 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|330834066|ref|YP_004408794.1| - 0.00042 19.8 0.0 0.04 13.3 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_22 PF13401.1 gi|330834066|ref|YP_004408794.1| - 0.0017 18.5 0.1 0.012 15.8 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_3 PF07726.6 gi|330834066|ref|YP_004408794.1| - 0.018 14.6 0.0 2 8.0 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Tup_N PF08581.5 gi|330834066|ref|YP_004408794.1| - 0.018 15.2 1.7 0.041 14.0 1.2 1.5 1 0 0 1 1 1 0 Tup N-terminal AAA_16 PF13191.1 gi|330834066|ref|YP_004408794.1| - 0.021 14.8 0.0 0.069 13.1 0.0 1.9 1 0 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|330834066|ref|YP_004408794.1| - 0.038 14.7 0.1 0.55 11.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain Acyl-CoA_dh_1 PF00441.19 gi|330834067|ref|YP_004408795.1| - 4.8e-41 140.3 8.0 7.5e-41 139.7 5.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|330834067|ref|YP_004408795.1| - 1.2e-18 67.6 4.2 2.2e-18 66.7 2.9 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|330834067|ref|YP_004408795.1| - 1.1e-17 63.2 0.1 2.4e-17 62.1 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.11 gi|330834067|ref|YP_004408795.1| - 2.9e-15 56.8 1.7 3.8e-15 56.4 0.1 2.0 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.3 gi|330834067|ref|YP_004408795.1| - 0.23 10.7 1.3 0.54 9.5 0.0 2.1 3 0 0 3 3 3 0 4-hydroxyphenylacetate 3-hydroxylase N terminal CitMHS PF03600.11 gi|330834068|ref|YP_004408796.1| - 2.7e-29 101.8 31.6 9.9e-25 86.8 16.4 2.1 1 1 1 2 2 2 2 Citrate transporter MFS_1 PF07690.11 gi|330834069|ref|YP_004408797.1| - 1.4e-11 43.7 32.4 2.9e-11 42.7 22.5 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily 4HBT PF03061.17 gi|330834070|ref|YP_004408798.1| - 7.7e-23 80.4 0.2 4.7e-10 39.4 0.0 2.3 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.1 gi|330834070|ref|YP_004408798.1| - 0.0085 16.5 0.0 0.24 11.8 0.0 2.2 1 1 0 2 2 2 1 Thioesterase-like superfamily AAA_10 PF12846.2 gi|330834072|ref|YP_004408800.1| - 5e-23 81.9 2.5 2.7e-22 79.6 1.7 2.0 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|330834072|ref|YP_004408800.1| - 3.3e-14 53.2 1.9 2.3e-13 50.4 0.7 2.6 1 1 0 2 2 2 1 Domain of unknown function DUF87 TrwB_AAD_bind PF10412.4 gi|330834072|ref|YP_004408800.1| - 1.4e-07 30.5 0.0 3.6e-07 29.1 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|330834072|ref|YP_004408800.1| - 7.1e-07 28.9 0.0 2.6e-06 27.0 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF853 PF05872.7 gi|330834072|ref|YP_004408800.1| - 2.5e-06 26.1 0.0 0.038 12.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.24 gi|330834072|ref|YP_004408800.1| - 5.8e-05 23.3 2.3 0.19 11.9 0.1 3.4 3 1 1 4 4 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|330834072|ref|YP_004408800.1| - 6.4e-05 23.1 0.0 0.37 10.9 0.0 2.7 3 0 0 3 3 2 2 AAA domain Zot PF05707.7 gi|330834072|ref|YP_004408800.1| - 0.00015 21.3 0.0 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_14 PF13173.1 gi|330834072|ref|YP_004408800.1| - 0.0013 18.6 1.5 0.66 9.8 0.0 2.9 3 0 0 3 3 3 2 AAA domain Miro PF08477.8 gi|330834072|ref|YP_004408800.1| - 0.0013 19.1 0.1 0.54 10.7 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein AAA_25 PF13481.1 gi|330834072|ref|YP_004408800.1| - 0.0017 17.8 0.0 0.47 9.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain ResIII PF04851.10 gi|330834072|ref|YP_004408800.1| - 0.0019 18.0 0.1 2.3 8.0 0.0 2.6 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|330834072|ref|YP_004408800.1| - 0.0035 17.0 0.0 0.0071 16.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|330834072|ref|YP_004408800.1| - 0.014 14.9 0.0 1.4 8.4 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase Meth_synt_1 PF08267.7 gi|330834072|ref|YP_004408800.1| - 0.021 14.1 0.0 0.031 13.5 0.0 1.2 1 0 0 1 1 1 0 Cobalamin-independent synthase, N-terminal domain AAA_29 PF13555.1 gi|330834072|ref|YP_004408800.1| - 0.06 12.8 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|330834072|ref|YP_004408800.1| - 0.13 11.9 0.0 0.33 10.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|330834072|ref|YP_004408800.1| - 0.13 12.5 0.1 0.93 9.7 0.0 2.3 2 1 1 3 3 2 0 ABC transporter T2SE PF00437.15 gi|330834072|ref|YP_004408800.1| - 0.17 10.7 0.0 0.32 9.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|330834072|ref|YP_004408800.1| - 4.9 7.4 12.3 18 5.5 8.5 1.8 1 1 0 1 1 1 0 AAA domain NurA PF09376.5 gi|330834073|ref|YP_004408801.1| - 7.5e-17 61.6 0.0 9.5e-17 61.2 0.0 1.1 1 0 0 1 1 1 1 NurA domain Pyr_redox_2 PF07992.9 gi|330834074|ref|YP_004408802.1| - 5.3e-29 101.5 0.9 1.1e-27 97.2 0.6 3.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330834074|ref|YP_004408802.1| - 3.2e-22 78.7 7.9 1.1e-17 64.2 2.1 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330834074|ref|YP_004408802.1| - 2.9e-16 59.4 0.2 9.2e-16 57.8 0.0 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|330834074|ref|YP_004408802.1| - 4.6e-09 35.6 7.2 0.023 13.6 0.1 4.0 4 0 0 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|330834074|ref|YP_004408802.1| - 5.4e-09 36.4 0.7 0.004 17.2 0.0 3.1 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330834074|ref|YP_004408802.1| - 5.6e-08 31.6 6.3 0.0048 15.4 0.0 3.9 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|330834074|ref|YP_004408802.1| - 4.9e-07 29.6 0.5 0.0063 16.5 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|330834074|ref|YP_004408802.1| - 1.5e-06 27.4 0.5 0.0015 17.5 0.0 2.8 3 0 0 3 3 3 2 Lycopene cyclase protein TrkA_N PF02254.13 gi|330834074|ref|YP_004408802.1| - 0.00016 21.6 1.4 0.017 15.1 0.6 2.4 2 0 0 2 2 2 1 TrkA-N domain GIDA PF01134.17 gi|330834074|ref|YP_004408802.1| - 0.00019 20.4 7.9 0.28 9.9 0.7 3.6 3 1 1 5 5 5 2 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|330834074|ref|YP_004408802.1| - 0.0028 16.3 1.0 0.12 11.0 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase K_oxygenase PF13434.1 gi|330834074|ref|YP_004408802.1| - 0.003 16.5 0.0 0.0057 15.6 0.0 1.6 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|330834074|ref|YP_004408802.1| - 0.0062 15.4 6.0 0.009 14.8 0.0 2.8 2 1 0 3 3 3 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|330834074|ref|YP_004408802.1| - 0.0077 15.9 0.6 0.044 13.5 0.1 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.2 gi|330834074|ref|YP_004408802.1| - 0.009 15.1 1.2 0.26 10.3 0.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|330834074|ref|YP_004408802.1| - 0.009 15.6 0.6 0.009 15.6 0.4 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|330834074|ref|YP_004408802.1| - 0.018 14.8 6.9 8.5 6.1 0.0 3.9 3 1 1 4 4 4 0 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|330834074|ref|YP_004408802.1| - 0.018 14.5 0.4 4.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|330834074|ref|YP_004408802.1| - 0.02 15.1 0.1 9.1 6.6 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding Thi4 PF01946.12 gi|330834074|ref|YP_004408802.1| - 0.021 13.9 0.5 0.34 9.9 0.0 2.4 2 0 0 2 2 2 0 Thi4 family 2-Hacid_dh_C PF02826.14 gi|330834074|ref|YP_004408802.1| - 0.023 13.8 0.1 0.26 10.4 0.0 2.4 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|330834074|ref|YP_004408802.1| - 0.12 12.8 1.2 0.24 11.8 0.1 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|330834074|ref|YP_004408802.1| - 2.5 7.0 5.4 0.9 8.5 0.5 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4635 PF15466.1 gi|330834075|ref|YP_004408803.1| - 0.035 13.4 0.3 0.087 12.1 0.2 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4635) tRNA-synt_1e PF01406.14 gi|330834076|ref|YP_004408804.1| - 1.6e-120 401.8 0.5 2.5e-120 401.1 0.3 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|330834076|ref|YP_004408804.1| - 1e-16 60.5 1.5 3.8e-08 32.4 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.6 gi|330834076|ref|YP_004408804.1| - 1.2e-08 35.0 2.6 3.3e-08 33.6 1.8 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.17 gi|330834076|ref|YP_004408804.1| - 2.4e-07 29.1 0.0 0.0001 20.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|330834076|ref|YP_004408804.1| - 1.4e-05 23.9 0.2 0.00033 19.4 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|330834076|ref|YP_004408804.1| - 0.00053 18.9 2.2 0.01 14.6 0.1 3.1 3 1 1 4 4 4 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.16 gi|330834076|ref|YP_004408804.1| - 0.0096 14.6 0.2 0.052 12.1 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain Membrane_bind PF14564.1 gi|330834076|ref|YP_004408804.1| - 0.021 15.0 0.1 0.049 13.8 0.0 1.7 1 0 0 1 1 1 0 Membrane binding NUDIX PF00293.23 gi|330834077|ref|YP_004408805.1| - 4e-15 55.6 0.0 5e-15 55.3 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain ELFV_dehydrog PF00208.16 gi|330834079|ref|YP_004408807.1| - 3.8e-67 226.4 0.7 6.1e-67 225.7 0.5 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|330834079|ref|YP_004408807.1| - 2.8e-49 166.0 0.0 5.5e-49 165.0 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|330834079|ref|YP_004408807.1| - 0.0073 15.4 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2385 PF09539.5 gi|330834079|ref|YP_004408807.1| - 0.068 13.5 0.1 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) DUF131 PF01998.12 gi|330834080|ref|YP_004408808.1| - 2.5e-18 65.1 2.5 2.5e-18 65.1 1.7 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 BCCT PF02028.12 gi|330834080|ref|YP_004408808.1| - 0.0075 14.5 0.4 0.0084 14.3 0.3 1.0 1 0 0 1 1 1 1 BCCT family transporter Na_H_antiporter PF03553.9 gi|330834080|ref|YP_004408808.1| - 0.015 14.3 1.2 0.016 14.2 0.9 1.0 1 0 0 1 1 1 0 Na+/H+ antiporter family SUR7 PF06687.7 gi|330834080|ref|YP_004408808.1| - 0.094 12.2 1.1 0.12 11.9 0.8 1.2 1 0 0 1 1 1 0 SUR7/PalI family DUF986 PF06173.7 gi|330834080|ref|YP_004408808.1| - 0.14 11.9 2.3 0.19 11.5 1.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF986) Ninjurin PF04923.7 gi|330834080|ref|YP_004408808.1| - 0.14 11.8 1.6 0.6 9.8 1.1 1.8 1 1 0 1 1 1 0 Ninjurin TMEM213 PF15192.1 gi|330834080|ref|YP_004408808.1| - 0.18 11.8 0.7 0.28 11.2 0.0 1.6 2 0 0 2 2 2 0 TMEM213 family Cyt_c_ox_IV PF12270.3 gi|330834080|ref|YP_004408808.1| - 0.19 11.4 4.0 7.6 6.2 1.7 2.1 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV PDR_CDR PF06422.7 gi|330834080|ref|YP_004408808.1| - 0.21 11.2 2.0 9.8 5.9 0.5 2.1 2 0 0 2 2 2 0 CDR ABC transporter DUF1686 PF07937.6 gi|330834080|ref|YP_004408808.1| - 0.23 11.0 2.2 0.99 8.9 1.1 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1686) DUF1980 PF09323.5 gi|330834080|ref|YP_004408808.1| - 0.42 10.3 2.2 1.2 8.8 0.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1980) DUF1191 PF06697.7 gi|330834080|ref|YP_004408808.1| - 0.62 8.8 2.7 7.7 5.2 2.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1191) Baculo_11_kDa PF06143.6 gi|330834080|ref|YP_004408808.1| - 0.68 9.3 5.4 6.7 6.1 0.1 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family OAD_gamma PF04277.8 gi|330834080|ref|YP_004408808.1| - 0.7 10.3 0.1 0.7 10.3 0.1 2.2 2 0 0 2 2 1 0 Oxaloacetate decarboxylase, gamma chain YrhC PF14143.1 gi|330834080|ref|YP_004408808.1| - 0.71 9.8 5.0 2.8 7.9 0.2 2.1 2 0 0 2 2 2 0 YrhC-like protein DUF3784 PF12650.2 gi|330834080|ref|YP_004408808.1| - 2 8.3 8.3 5.4 7.0 5.8 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF3784) DUF3139 PF11337.3 gi|330834080|ref|YP_004408808.1| - 3.6 7.9 8.5 19 5.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) AAA_15 PF13175.1 gi|330834081|ref|YP_004408809.1| - 8.1e-20 71.2 3.8 1.9e-13 50.2 0.2 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_21 PF13304.1 gi|330834081|ref|YP_004408809.1| - 1.6e-18 67.7 6.4 1.6e-18 67.7 4.4 3.3 2 2 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|330834081|ref|YP_004408809.1| - 2.4e-06 26.9 0.1 4.7e-06 26.0 0.1 1.5 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330834081|ref|YP_004408809.1| - 2.1e-05 24.9 0.2 4.1e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.3 gi|330834081|ref|YP_004408809.1| - 0.069 12.2 0.3 0.49 9.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) adh_short_C2 PF13561.1 gi|330834082|ref|YP_004408810.1| - 8e-28 97.8 0.0 9.3e-28 97.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|330834082|ref|YP_004408810.1| - 7.5e-15 55.2 0.0 1.2e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|330834082|ref|YP_004408810.1| - 0.0032 17.1 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|330834082|ref|YP_004408810.1| - 0.03 14.3 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding THF_DHG_CYH_C PF02882.14 gi|330834082|ref|YP_004408810.1| - 0.078 12.0 0.0 0.15 11.1 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UDG PF03167.14 gi|330834083|ref|YP_004408811.1| - 1.8e-42 144.3 0.0 2.2e-42 144.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MFS_1 PF07690.11 gi|330834084|ref|YP_004408812.1| - 7.2e-20 70.9 33.0 7.2e-20 70.9 22.8 3.1 1 1 0 2 2 2 1 Major Facilitator Superfamily DUF2975 PF11188.3 gi|330834084|ref|YP_004408812.1| - 0.03 14.0 0.5 0.03 14.0 0.4 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2975) MFS_1 PF07690.11 gi|330834085|ref|YP_004408813.1| - 1.6e-10 40.2 0.1 1.9e-10 40.0 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily TauE PF01925.14 gi|330834088|ref|YP_004408816.1| - 5.3e-49 166.8 44.6 8.7e-49 166.1 30.9 1.3 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE SNARE_assoc PF09335.6 gi|330834089|ref|YP_004408817.1| - 2.2e-21 76.3 5.2 2.2e-21 76.3 3.6 1.5 2 0 0 2 2 2 1 SNARE associated Golgi protein PgpA PF04608.8 gi|330834089|ref|YP_004408817.1| - 0.73 9.6 4.6 8.1 6.2 3.2 2.2 1 1 0 1 1 1 0 Phosphatidylglycerophosphatase A Fe_dep_repr_C PF02742.10 gi|330834090|ref|YP_004408818.1| - 3.6e-17 61.8 0.0 5.7e-17 61.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|330834090|ref|YP_004408818.1| - 3.5e-07 30.0 0.0 5.4e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|330834090|ref|YP_004408818.1| - 4.7e-06 26.3 0.0 1e-05 25.2 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix LexA_DNA_bind PF01726.11 gi|330834090|ref|YP_004408818.1| - 3e-05 23.4 0.0 7.7e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 LexA DNA binding domain MarR PF01047.17 gi|330834090|ref|YP_004408818.1| - 3.8e-05 23.3 0.0 6.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|330834090|ref|YP_004408818.1| - 0.00034 20.2 0.0 0.00052 19.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HemN_C PF06969.11 gi|330834090|ref|YP_004408818.1| - 0.00048 20.1 0.0 0.0025 17.8 0.0 2.0 2 0 0 2 2 2 1 HemN C-terminal domain HTH_IclR PF09339.5 gi|330834090|ref|YP_004408818.1| - 0.0011 18.4 0.0 0.0043 16.6 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|330834090|ref|YP_004408818.1| - 0.0014 18.8 0.0 0.0025 18.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|330834090|ref|YP_004408818.1| - 0.0019 17.8 0.0 0.075 12.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|330834090|ref|YP_004408818.1| - 0.0033 17.1 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|330834090|ref|YP_004408818.1| - 0.0051 16.4 0.1 0.0089 15.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Ribosomal_S19e PF01090.14 gi|330834090|ref|YP_004408818.1| - 0.011 15.1 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_24 PF13412.1 gi|330834090|ref|YP_004408818.1| - 0.029 13.7 0.1 0.1 12.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2250 PF10007.4 gi|330834090|ref|YP_004408818.1| - 0.046 13.6 0.2 0.21 11.5 0.0 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) B-block_TFIIIC PF04182.7 gi|330834090|ref|YP_004408818.1| - 0.053 13.3 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC IF2_N PF04760.10 gi|330834090|ref|YP_004408818.1| - 0.059 13.0 0.8 1.1 8.9 0.0 2.7 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region DUF505 PF04458.7 gi|330834090|ref|YP_004408818.1| - 0.088 10.9 0.0 0.11 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF4423 PF14394.1 gi|330834090|ref|YP_004408818.1| - 0.093 12.2 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) EppA_BapA PF07268.6 gi|330834090|ref|YP_004408818.1| - 0.1 12.2 0.0 0.14 11.8 0.0 1.3 1 1 0 1 1 1 0 Exported protein precursor (EppA/BapA) FaeA PF04703.7 gi|330834090|ref|YP_004408818.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Na_H_Exchanger PF00999.16 gi|330834091|ref|YP_004408819.1| - 1.2e-32 112.8 44.6 1.6e-32 112.5 30.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.23 gi|330834091|ref|YP_004408819.1| - 1.7e-11 43.6 4.0 1.6e-05 24.5 0.0 3.1 3 0 0 3 3 3 2 CBS domain DHDPS PF00701.17 gi|330834092|ref|YP_004408820.1| - 3.7e-53 180.0 0.2 4.4e-53 179.7 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family DUF1641 PF07849.6 gi|330834095|ref|YP_004408823.1| - 2.7e-16 58.8 2.3 7.4e-14 51.0 0.2 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF1641) HEAT_2 PF13646.1 gi|330834095|ref|YP_004408823.1| - 0.12 12.6 0.1 0.53 10.5 0.0 2.2 2 1 0 2 2 2 0 HEAT repeats Pyr_redox_2 PF07992.9 gi|330834096|ref|YP_004408824.1| - 2.8e-10 40.4 0.0 3.9e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Abhydrolase_6 PF12697.2 gi|330834097|ref|YP_004408825.1| - 1.2e-24 87.4 0.0 2.8e-17 63.3 0.0 2.0 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|330834097|ref|YP_004408825.1| - 1.1e-22 80.3 0.0 1.3e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|330834097|ref|YP_004408825.1| - 9.8e-13 48.1 0.0 2.7e-07 30.3 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Ndr PF03096.9 gi|330834097|ref|YP_004408825.1| - 1.2e-05 23.9 0.0 0.00033 19.2 0.0 1.9 1 1 1 2 2 2 1 Ndr family Hydrolase_4 PF12146.3 gi|330834097|ref|YP_004408825.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|330834097|ref|YP_004408825.1| - 0.038 13.8 0.0 0.073 12.9 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.15 gi|330834097|ref|YP_004408825.1| - 0.13 11.7 0.0 0.33 10.3 0.0 2.0 1 1 0 1 1 1 0 Putative esterase DUF2250 PF10007.4 gi|330834098|ref|YP_004408826.1| - 1.1e-66 220.7 15.9 1e-36 124.7 2.6 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4393 PF14337.1 gi|330834098|ref|YP_004408826.1| - 2.2e-06 27.2 2.7 0.016 14.6 0.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4393) DUF4423 PF14394.1 gi|330834098|ref|YP_004408826.1| - 7.8e-06 25.5 1.8 0.0022 17.5 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) TrmB PF01978.14 gi|330834098|ref|YP_004408826.1| - 0.00043 19.9 0.8 0.047 13.3 0.1 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|330834098|ref|YP_004408826.1| - 0.0013 18.3 0.5 0.23 11.0 0.0 2.3 2 0 0 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2806 PF10987.3 gi|330834098|ref|YP_004408826.1| - 0.0028 17.1 1.6 0.034 13.6 0.3 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF2806) MarR_2 PF12802.2 gi|330834098|ref|YP_004408826.1| - 0.038 13.6 0.2 1.2 8.8 0.0 2.7 2 0 0 2 2 2 0 MarR family MerR-DNA-bind PF09278.6 gi|330834098|ref|YP_004408826.1| - 0.047 14.0 0.3 0.12 12.8 0.2 1.7 1 0 0 1 1 1 0 MerR, DNA binding HTH_WhiA PF02650.9 gi|330834098|ref|YP_004408826.1| - 0.05 14.0 1.7 8.3 6.8 0.1 3.0 1 1 1 3 3 3 0 WhiA C-terminal HTH domain MarR PF01047.17 gi|330834098|ref|YP_004408826.1| - 0.1 12.2 0.7 0.42 10.3 0.0 2.3 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|330834098|ref|YP_004408826.1| - 0.15 11.8 1.5 13 5.6 0.0 2.9 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|330834098|ref|YP_004408826.1| - 0.21 11.9 5.1 6.9 7.0 0.1 3.0 3 1 0 3 3 2 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|330834098|ref|YP_004408826.1| - 0.21 11.4 8.9 0.55 10.0 1.7 3.7 1 1 1 3 3 3 0 Winged helix-turn-helix ArgK PF03308.11 gi|330834099|ref|YP_004408827.1| - 1.7e-85 286.0 0.6 2.1e-85 285.7 0.4 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|330834099|ref|YP_004408827.1| - 1.5e-08 34.3 0.5 6e-08 32.3 0.3 1.9 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|330834099|ref|YP_004408827.1| - 9.5e-06 25.1 0.9 0.0026 17.2 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain CbiA PF01656.18 gi|330834099|ref|YP_004408827.1| - 2.4e-05 23.8 0.2 4.8e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|330834099|ref|YP_004408827.1| - 7.7e-05 23.5 1.3 0.00045 21.0 0.9 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330834099|ref|YP_004408827.1| - 0.00011 21.7 0.4 0.00027 20.4 0.3 1.8 1 1 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|330834099|ref|YP_004408827.1| - 0.00012 22.0 0.7 0.00029 20.7 0.1 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase ABC_tran PF00005.22 gi|330834099|ref|YP_004408827.1| - 0.00014 22.1 0.3 0.00031 21.0 0.1 1.7 2 0 0 2 2 2 1 ABC transporter ATP_bind_1 PF03029.12 gi|330834099|ref|YP_004408827.1| - 0.00025 20.6 1.2 0.0018 17.8 0.0 2.6 3 1 1 4 4 3 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|330834099|ref|YP_004408827.1| - 0.00065 19.4 1.5 0.0015 18.2 0.1 2.1 2 0 0 2 2 2 1 NTPase KAP_NTPase PF07693.9 gi|330834099|ref|YP_004408827.1| - 0.0014 17.6 0.0 0.0024 16.9 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain MipZ PF09140.6 gi|330834099|ref|YP_004408827.1| - 0.0015 17.6 0.0 0.0027 16.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ FtsK_SpoIIIE PF01580.13 gi|330834099|ref|YP_004408827.1| - 0.002 17.6 1.1 0.0033 16.9 0.1 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF87 PF01935.12 gi|330834099|ref|YP_004408827.1| - 0.0021 17.9 3.6 0.0033 17.2 0.3 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF87 MobB PF03205.9 gi|330834099|ref|YP_004408827.1| - 0.0031 17.2 0.1 0.009 15.7 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|330834099|ref|YP_004408827.1| - 0.0073 15.7 0.2 0.051 13.0 0.2 2.3 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|330834099|ref|YP_004408827.1| - 0.008 15.6 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|330834099|ref|YP_004408827.1| - 0.009 16.3 0.2 0.009 16.3 0.2 2.2 2 1 0 2 2 2 1 AAA domain DDR PF08841.5 gi|330834099|ref|YP_004408827.1| - 0.0099 14.7 0.1 0.014 14.2 0.1 1.2 1 0 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain AAA_16 PF13191.1 gi|330834099|ref|YP_004408827.1| - 0.011 15.7 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|330834099|ref|YP_004408827.1| - 0.011 15.2 0.2 0.023 14.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|330834099|ref|YP_004408827.1| - 0.012 14.8 0.1 0.026 13.7 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|330834099|ref|YP_004408827.1| - 0.012 15.4 0.4 0.036 13.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|330834099|ref|YP_004408827.1| - 0.013 15.0 0.1 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330834099|ref|YP_004408827.1| - 0.016 15.3 0.1 0.077 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|330834099|ref|YP_004408827.1| - 0.019 14.5 0.3 0.04 13.4 0.1 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF815 PF05673.8 gi|330834099|ref|YP_004408827.1| - 0.021 13.7 0.0 0.047 12.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_19 PF13245.1 gi|330834099|ref|YP_004408827.1| - 0.033 13.9 0.7 0.062 13.0 0.1 1.7 2 0 0 2 2 1 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|330834099|ref|YP_004408827.1| - 0.042 12.4 0.0 0.067 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|330834099|ref|YP_004408827.1| - 0.044 13.7 0.2 0.16 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|330834099|ref|YP_004408827.1| - 0.047 12.7 0.8 0.18 10.8 0.1 2.1 2 1 0 2 2 2 0 Zeta toxin Thymidylate_kin PF02223.12 gi|330834099|ref|YP_004408827.1| - 0.048 13.0 0.1 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 Thymidylate kinase FeoB_N PF02421.13 gi|330834099|ref|YP_004408827.1| - 0.082 12.1 0.5 1.7 7.9 0.0 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B DUF463 PF04317.7 gi|330834099|ref|YP_004408827.1| - 0.086 11.4 0.0 0.16 10.5 0.0 1.4 1 0 0 1 1 1 0 YcjX-like family, DUF463 APS_kinase PF01583.15 gi|330834099|ref|YP_004408827.1| - 0.091 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.1 gi|330834099|ref|YP_004408827.1| - 0.1 12.0 0.4 0.32 10.3 0.3 1.8 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|330834099|ref|YP_004408827.1| - 0.29 9.9 2.8 0.26 10.0 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain B12-binding PF02310.14 gi|330834100|ref|YP_004408828.1| - 1.9e-22 79.4 0.5 2.3e-22 79.1 0.4 1.1 1 0 0 1 1 1 1 B12 binding domain Radical_SAM PF04055.16 gi|330834100|ref|YP_004408828.1| - 0.05 13.7 0.1 0.15 12.2 0.1 1.8 1 1 0 1 1 1 0 Radical SAM superfamily TPP_enzyme_N PF02776.13 gi|330834100|ref|YP_004408828.1| - 0.11 12.0 0.2 8.3 5.8 0.0 2.4 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Oxidored_nitro PF00148.14 gi|330834100|ref|YP_004408828.1| - 0.11 11.0 0.2 0.81 8.2 0.1 1.8 1 1 1 2 2 2 0 Nitrogenase component 1 type Oxidoreductase Nitro_FeMo-Co PF02579.12 gi|330834100|ref|YP_004408828.1| - 0.12 12.5 0.5 21 5.2 0.0 2.6 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor Peripla_BP_4 PF13407.1 gi|330834100|ref|YP_004408828.1| - 0.13 11.5 0.1 0.27 10.5 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain UPF0147 PF03685.8 gi|330834101|ref|YP_004408829.1| - 3.5e-37 126.1 3.2 3.8e-37 126.0 2.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|330834101|ref|YP_004408829.1| - 0.0028 17.7 0.7 0.31 11.2 0.1 2.2 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0253) HEAT_2 PF13646.1 gi|330834101|ref|YP_004408829.1| - 0.094 13.0 0.5 0.18 12.0 0.3 1.5 1 1 0 1 1 1 0 HEAT repeats Auto_anti-p27 PF06677.7 gi|330834102|ref|YP_004408830.1| - 4.5e-16 58.3 0.1 6.9e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) N1221 PF07923.8 gi|330834102|ref|YP_004408830.1| - 0.025 13.4 0.1 0.035 12.9 0.1 1.2 1 0 0 1 1 1 0 N1221-like protein FYDLN_acid PF09538.5 gi|330834102|ref|YP_004408830.1| - 0.028 14.9 0.0 0.034 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|330834102|ref|YP_004408830.1| - 0.032 13.5 0.1 0.07 12.4 0.1 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|330834102|ref|YP_004408830.1| - 0.041 13.5 0.7 0.073 12.7 0.4 1.6 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain DUF723 PF05265.8 gi|330834102|ref|YP_004408830.1| - 0.042 13.6 0.3 0.61 9.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF723) PhoU PF01895.14 gi|330834102|ref|YP_004408830.1| - 0.073 13.5 0.6 0.12 12.7 0.4 1.4 1 0 0 1 1 1 0 PhoU domain GFA PF04828.9 gi|330834102|ref|YP_004408830.1| - 0.11 12.4 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Clp1 PF06807.9 gi|330834103|ref|YP_004408831.1| - 0.0013 18.5 0.1 0.0048 16.6 0.1 1.9 1 1 0 1 1 1 1 Pre-mRNA cleavage complex II protein Clp1 AAA_14 PF13173.1 gi|330834103|ref|YP_004408831.1| - 0.0014 18.5 0.1 0.003 17.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|330834103|ref|YP_004408831.1| - 0.01 15.5 0.0 0.062 13.0 0.0 2.2 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|330834103|ref|YP_004408831.1| - 0.023 15.5 0.4 0.26 12.0 0.3 2.3 1 1 0 1 1 1 0 AAA domain AAA_21 PF13304.1 gi|330834103|ref|YP_004408831.1| - 0.19 11.6 5.9 0.32 10.9 4.1 1.5 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|330834105|ref|YP_004408833.1| - 3.2e-05 23.1 1.8 0.0097 15.0 0.1 2.1 1 1 1 2 2 2 2 KaiC AAA_25 PF13481.1 gi|330834105|ref|YP_004408833.1| - 5.7e-05 22.5 0.2 0.015 14.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|330834105|ref|YP_004408833.1| - 0.00077 19.6 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330834105|ref|YP_004408833.1| - 0.002 18.3 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|330834105|ref|YP_004408833.1| - 0.011 15.5 0.8 0.031 13.9 0.6 1.7 1 1 0 1 1 1 0 Archaeal ATPase RecA PF00154.16 gi|330834105|ref|YP_004408833.1| - 0.1 11.6 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ATP-synt_ab PF00006.20 gi|330834105|ref|YP_004408833.1| - 0.11 12.0 0.2 0.32 10.4 0.1 1.9 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|330834105|ref|YP_004408833.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF46 PF01864.12 gi|330834106|ref|YP_004408834.1| - 1.4e-39 135.7 7.9 6e-39 133.7 5.4 1.7 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|330834106|ref|YP_004408834.1| - 0.00021 21.0 3.0 0.00021 21.0 2.1 2.1 1 1 1 2 2 2 1 Cytidylyltransferase family DUF347 PF03988.7 gi|330834106|ref|YP_004408834.1| - 0.86 9.5 7.2 5.1 7.0 0.0 3.1 3 0 0 3 3 3 0 Repeat of Unknown Function (DUF347) ABC2_membrane_5 PF13346.1 gi|330834107|ref|YP_004408835.1| - 0.01 15.1 10.8 0.011 15.0 7.5 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein 7TMR-DISM_7TM PF07695.6 gi|330834107|ref|YP_004408835.1| - 0.086 12.4 8.6 0.099 12.3 6.0 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF4153 PF13687.1 gi|330834107|ref|YP_004408835.1| - 0.22 11.0 8.4 0.29 10.6 5.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4153) DUF981 PF06168.6 gi|330834107|ref|YP_004408835.1| - 0.98 9.1 11.2 7.3 6.3 7.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF981) ABC2_membrane_3 PF12698.2 gi|330834107|ref|YP_004408835.1| - 1.2 8.1 9.7 1.4 7.8 6.7 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein MCM PF00493.18 gi|330834109|ref|YP_004408837.1| - 8.8e-132 438.8 0.4 1.3e-131 438.3 0.2 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|330834109|ref|YP_004408837.1| - 3.1e-21 76.0 3.5 3.8e-21 75.7 1.0 2.2 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|330834109|ref|YP_004408837.1| - 1.9e-08 34.1 0.0 5.4e-08 32.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|330834109|ref|YP_004408837.1| - 1.9e-06 27.1 0.0 0.00014 21.0 0.0 2.5 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|330834109|ref|YP_004408837.1| - 1.7e-05 24.3 0.2 6e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|330834109|ref|YP_004408837.1| - 3.5e-05 23.4 0.0 7.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF3987 PF13148.1 gi|330834109|ref|YP_004408837.1| - 0.067 11.7 0.2 8.7 4.7 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) HEPN PF05168.9 gi|330834109|ref|YP_004408837.1| - 0.44 10.4 4.3 1 9.2 0.2 3.3 3 1 0 4 4 4 0 HEPN domain Sld5 PF05916.6 gi|330834110|ref|YP_004408838.1| - 4.6e-08 33.3 0.6 4.6e-08 33.3 0.4 1.8 2 0 0 2 2 2 1 GINS complex protein Arg_repressor PF01316.16 gi|330834110|ref|YP_004408838.1| - 0.055 13.0 0.3 0.16 11.5 0.0 2.0 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain DUF4350 PF14258.1 gi|330834110|ref|YP_004408838.1| - 0.089 13.0 0.0 10 6.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) THUMP PF02926.12 gi|330834111|ref|YP_004408839.1| - 0.00024 20.9 0.1 0.0003 20.6 0.1 1.1 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.6 gi|330834112|ref|YP_004408840.1| - 1.1e-21 76.3 0.4 2.5e-21 75.1 0.3 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|330834112|ref|YP_004408840.1| - 4.9e-14 52.5 0.3 4.5e-13 49.4 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA PF00004.24 gi|330834112|ref|YP_004408840.1| - 2.6e-06 27.6 0.1 7.6e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330834112|ref|YP_004408840.1| - 3.2e-06 27.2 0.1 0.00011 22.3 0.0 2.6 2 1 0 2 2 2 1 AAA ATPase domain T2SE PF00437.15 gi|330834112|ref|YP_004408840.1| - 0.00093 18.1 0.3 0.0017 17.2 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|330834112|ref|YP_004408840.1| - 0.0021 17.7 1.4 0.0074 16.0 0.4 2.1 1 1 1 2 2 2 1 Archaeal ATPase AAA_19 PF13245.1 gi|330834112|ref|YP_004408840.1| - 0.008 15.9 0.1 0.02 14.6 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|330834112|ref|YP_004408840.1| - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|330834112|ref|YP_004408840.1| - 0.021 14.4 0.0 0.045 13.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|330834112|ref|YP_004408840.1| - 0.029 15.2 0.6 0.16 12.7 0.3 2.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|330834112|ref|YP_004408840.1| - 0.032 14.1 0.8 0.18 11.6 0.6 2.3 1 1 0 1 1 1 0 AAA domain DUF2036 PF09724.4 gi|330834112|ref|YP_004408840.1| - 0.045 12.8 0.0 0.091 11.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2036) AAA_24 PF13479.1 gi|330834112|ref|YP_004408840.1| - 0.057 12.9 1.2 0.12 11.9 0.8 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|330834112|ref|YP_004408840.1| - 0.14 12.0 0.1 1.1 9.1 0.2 2.3 2 0 0 2 2 2 0 AAA domain MoaC PF01967.16 gi|330834113|ref|YP_004408841.1| - 1.3e-50 170.6 1.7 1.4e-50 170.4 1.1 1.0 1 0 0 1 1 1 1 MoaC family AAA PF00004.24 gi|330834114|ref|YP_004408842.1| - 8.2e-16 58.4 0.0 1.8e-15 57.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|330834114|ref|YP_004408842.1| - 1.5e-11 43.7 0.0 7.5e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Rad17 PF03215.10 gi|330834114|ref|YP_004408842.1| - 6.6e-11 41.5 0.1 2.7e-06 26.3 0.0 2.5 3 0 0 3 3 3 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|330834114|ref|YP_004408842.1| - 6.8e-08 32.4 0.1 5.2e-07 29.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|330834114|ref|YP_004408842.1| - 5.4e-07 30.4 0.3 3.2e-06 27.9 0.0 2.4 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|330834114|ref|YP_004408842.1| - 1.7e-06 27.8 0.0 3.3e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|330834114|ref|YP_004408842.1| - 4.2e-06 25.7 0.2 0.0041 15.9 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus RNA_helicase PF00910.17 gi|330834114|ref|YP_004408842.1| - 1.1e-05 25.5 0.0 0.00022 21.3 0.0 2.7 2 1 0 2 2 2 1 RNA helicase DUF815 PF05673.8 gi|330834114|ref|YP_004408842.1| - 3.6e-05 22.8 0.0 5.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_22 PF13401.1 gi|330834114|ref|YP_004408842.1| - 4.2e-05 23.7 2.5 0.00065 19.8 0.1 3.5 3 1 1 4 4 3 1 AAA domain DNA_pol3_delta PF06144.8 gi|330834114|ref|YP_004408842.1| - 4.7e-05 22.9 0.1 0.00016 21.2 0.0 1.9 2 0 0 2 2 2 1 DNA polymerase III, delta subunit AAA_16 PF13191.1 gi|330834114|ref|YP_004408842.1| - 6.4e-05 23.0 0.0 0.00025 21.0 0.0 2.0 1 1 0 2 2 2 1 AAA ATPase domain AAA_24 PF13479.1 gi|330834114|ref|YP_004408842.1| - 0.00034 20.2 0.0 0.00068 19.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|330834114|ref|YP_004408842.1| - 0.00053 19.4 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|330834114|ref|YP_004408842.1| - 0.00067 19.1 0.0 0.0012 18.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|330834114|ref|YP_004408842.1| - 0.0011 18.9 0.0 0.0029 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|330834114|ref|YP_004408842.1| - 0.0014 18.3 0.3 0.84 9.2 0.0 3.6 3 0 0 3 3 3 1 NACHT domain IPT PF01745.11 gi|330834114|ref|YP_004408842.1| - 0.0055 15.9 0.0 0.014 14.6 0.0 1.6 1 1 0 1 1 1 1 Isopentenyl transferase AAA_18 PF13238.1 gi|330834114|ref|YP_004408842.1| - 0.0088 16.3 0.2 0.038 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|330834114|ref|YP_004408842.1| - 0.0098 15.0 0.0 0.019 14.0 0.0 1.5 1 0 0 1 1 1 1 KaiC Arch_ATPase PF01637.13 gi|330834114|ref|YP_004408842.1| - 0.011 15.4 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|330834114|ref|YP_004408842.1| - 0.012 14.8 0.0 0.02 14.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|330834114|ref|YP_004408842.1| - 0.013 14.5 0.0 0.031 13.3 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|330834114|ref|YP_004408842.1| - 0.015 14.1 0.0 0.033 13.0 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|330834114|ref|YP_004408842.1| - 0.024 14.5 0.0 0.06 13.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|330834114|ref|YP_004408842.1| - 0.024 14.5 0.0 0.074 13.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain PHB_depo_C PF06850.6 gi|330834114|ref|YP_004408842.1| - 0.055 12.6 0.0 0.09 11.9 0.0 1.3 1 0 0 1 1 1 0 PHB de-polymerase C-terminus AAA_11 PF13086.1 gi|330834114|ref|YP_004408842.1| - 0.086 12.4 0.2 0.26 10.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|330834114|ref|YP_004408842.1| - 0.13 11.9 0.1 1.2 8.8 0.0 2.2 1 1 1 2 2 2 0 NTPase AAA_19 PF13245.1 gi|330834114|ref|YP_004408842.1| - 0.14 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain Rep_fac_C PF08542.6 gi|330834115|ref|YP_004408843.1| - 5.2e-22 77.6 0.1 1.2e-21 76.4 0.1 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|330834115|ref|YP_004408843.1| - 3.9e-13 49.7 0.0 7.6e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|330834115|ref|YP_004408843.1| - 5e-12 45.7 0.0 1.2e-09 38.0 0.0 2.3 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|330834115|ref|YP_004408843.1| - 1.2e-08 34.1 0.0 0.00024 19.9 0.0 2.2 1 1 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|330834115|ref|YP_004408843.1| - 3.4e-07 29.5 0.0 8e-07 28.3 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_14 PF13173.1 gi|330834115|ref|YP_004408843.1| - 4e-06 26.7 0.1 3.2e-05 23.8 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|330834115|ref|YP_004408843.1| - 7.4e-06 26.1 0.0 0.0073 16.4 0.0 2.7 2 1 1 3 3 3 1 AAA domain AAA_3 PF07726.6 gi|330834115|ref|YP_004408843.1| - 3.1e-05 23.5 0.0 5.9e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|330834115|ref|YP_004408843.1| - 5.5e-05 23.2 0.0 0.0003 20.8 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain DNA_pol3_delta PF06144.8 gi|330834115|ref|YP_004408843.1| - 0.00031 20.3 0.1 0.00065 19.2 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_19 PF13245.1 gi|330834115|ref|YP_004408843.1| - 0.00032 20.3 0.0 0.00081 19.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|330834115|ref|YP_004408843.1| - 0.00035 20.6 0.0 0.0015 18.6 0.0 2.0 2 1 0 2 2 1 1 Sigma-54 interaction domain AAA_11 PF13086.1 gi|330834115|ref|YP_004408843.1| - 0.00054 19.6 0.0 0.00069 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|330834115|ref|YP_004408843.1| - 0.00077 18.9 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|330834115|ref|YP_004408843.1| - 0.0014 17.4 0.0 0.0057 15.4 0.0 1.8 2 0 0 2 2 2 1 TIP49 C-terminus FtsK_SpoIIIE PF01580.13 gi|330834115|ref|YP_004408843.1| - 0.0016 17.9 0.0 0.0043 16.5 0.0 1.7 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|330834115|ref|YP_004408843.1| - 0.0018 17.7 0.0 0.039 13.3 0.0 2.3 1 1 1 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|330834115|ref|YP_004408843.1| - 0.0022 16.9 0.0 0.0046 15.9 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|330834115|ref|YP_004408843.1| - 0.003 17.0 0.1 0.0086 15.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain Disaggr_repeat PF06848.6 gi|330834115|ref|YP_004408843.1| - 0.004 16.6 0.0 0.0065 15.9 0.0 1.3 1 0 0 1 1 1 1 Disaggregatase related repeat Mg_chelatase PF01078.16 gi|330834115|ref|YP_004408843.1| - 0.005 16.0 0.0 0.11 11.6 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI SNF2_N PF00176.18 gi|330834115|ref|YP_004408843.1| - 0.0078 15.0 0.0 0.52 9.0 0.0 2.2 1 1 1 2 2 2 1 SNF2 family N-terminal domain ResIII PF04851.10 gi|330834115|ref|YP_004408843.1| - 0.0099 15.7 0.0 0.026 14.3 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|330834115|ref|YP_004408843.1| - 0.013 14.7 0.0 0.69 9.1 0.0 2.4 1 1 0 2 2 2 0 PhoH-like protein AAA_5 PF07728.9 gi|330834115|ref|YP_004408843.1| - 0.014 15.1 0.1 0.14 11.9 0.0 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|330834115|ref|YP_004408843.1| - 0.015 15.5 0.0 0.054 13.8 0.0 2.0 2 0 0 2 2 1 0 AAA domain DEAD PF00270.24 gi|330834115|ref|YP_004408843.1| - 0.017 14.5 0.0 4.3 6.7 0.0 2.4 1 1 1 2 2 2 0 DEAD/DEAH box helicase DUF815 PF05673.8 gi|330834115|ref|YP_004408843.1| - 0.021 13.7 0.0 0.039 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|330834115|ref|YP_004408843.1| - 0.022 14.2 0.0 0.63 9.4 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_24 PF13479.1 gi|330834115|ref|YP_004408843.1| - 0.025 14.1 0.0 0.25 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|330834115|ref|YP_004408843.1| - 0.027 13.6 0.0 0.049 12.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF2075 PF09848.4 gi|330834115|ref|YP_004408843.1| - 0.031 13.2 0.1 0.13 11.2 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|330834115|ref|YP_004408843.1| - 0.053 13.4 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|330834115|ref|YP_004408843.1| - 0.053 14.3 1.1 0.12 13.1 0.0 2.2 2 1 0 2 2 1 0 AAA domain AAA_30 PF13604.1 gi|330834115|ref|YP_004408843.1| - 0.085 12.4 0.1 0.47 9.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|330834115|ref|YP_004408843.1| - 0.11 11.5 0.0 0.59 9.2 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin PBP PF01161.15 gi|330834116|ref|YP_004408844.1| - 1.1e-39 135.6 0.0 1.2e-39 135.4 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Proteasome PF00227.21 gi|330834117|ref|YP_004408845.1| - 3.6e-49 166.6 0.3 4.1e-49 166.4 0.2 1.0 1 0 0 1 1 1 1 Proteasome subunit HTH_20 PF12840.2 gi|330834118|ref|YP_004408846.1| - 1.1e-09 37.9 0.0 1.6e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|330834118|ref|YP_004408846.1| - 3.9e-06 26.1 0.5 7.7e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|330834118|ref|YP_004408846.1| - 1e-05 25.0 0.0 2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|330834118|ref|YP_004408846.1| - 4.6e-05 22.8 0.0 7.5e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain TrmB PF01978.14 gi|330834118|ref|YP_004408846.1| - 0.00081 19.0 0.5 0.0011 18.5 0.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330834118|ref|YP_004408846.1| - 0.0011 18.6 0.1 0.0035 16.9 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|330834118|ref|YP_004408846.1| - 0.0023 17.5 0.1 0.0043 16.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|330834118|ref|YP_004408846.1| - 0.0024 18.1 0.0 0.0034 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|330834118|ref|YP_004408846.1| - 0.01 15.5 0.2 0.016 14.9 0.1 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain MarR PF01047.17 gi|330834118|ref|YP_004408846.1| - 0.055 13.1 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.14 gi|330834118|ref|YP_004408846.1| - 0.12 12.2 0.2 0.23 11.3 0.0 1.6 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain DUF373 PF04123.8 gi|330834119|ref|YP_004408847.1| - 0.23 10.4 3.4 0.29 10.1 2.4 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF373) DUF3816 PF12822.2 gi|330834119|ref|YP_004408847.1| - 0.38 10.6 12.0 0.42 10.4 8.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) TMEM138 PF14935.1 gi|330834119|ref|YP_004408847.1| - 1.1 9.5 8.0 1.8 8.9 5.5 1.4 1 1 0 1 1 1 0 Transmembrane protein 138 DUF2207 PF09972.4 gi|330834119|ref|YP_004408847.1| - 1.8 7.0 6.7 2.1 6.8 4.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF202 PF02656.10 gi|330834119|ref|YP_004408847.1| - 3.2 8.0 7.2 0.52 10.5 2.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2651 PF10852.3 gi|330834119|ref|YP_004408847.1| - 8 6.8 11.5 16 5.9 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) COX1 PF00115.15 gi|330834120|ref|YP_004408848.1| - 5.7e-61 206.4 59.6 5.7e-61 206.4 41.3 2.8 1 1 2 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I Cu-oxidase_3 PF07732.10 gi|330834121|ref|YP_004408849.1| - 0.00092 18.9 0.3 0.031 13.9 0.4 3.0 2 1 0 2 2 2 1 Multicopper oxidase DUF3675 PF12428.3 gi|330834122|ref|YP_004408850.1| - 0.45 10.7 1.7 0.47 10.7 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3675) RseC_MucC PF04246.7 gi|330834122|ref|YP_004408850.1| - 1.3 8.6 3.1 1.4 8.4 2.1 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3951 PF13131.1 gi|330834122|ref|YP_004408850.1| - 7.9 6.3 8.9 0.74 9.6 1.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3951) TatD_DNase PF01026.16 gi|330834123|ref|YP_004408851.1| - 2.5e-49 167.7 0.0 2.9e-49 167.5 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Antitoxin-MazE PF04014.13 gi|330834124|ref|YP_004408852.1| - 3.2e-11 42.6 0.1 3.5e-11 42.5 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|330834124|ref|YP_004408852.1| - 8.8e-05 21.8 0.2 0.00013 21.3 0.1 1.3 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1905 PF08922.6 gi|330834124|ref|YP_004408852.1| - 0.054 13.0 0.1 0.14 11.7 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1905) DUF3876 PF12992.2 gi|330834124|ref|YP_004408852.1| - 0.059 13.3 0.1 0.094 12.6 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function, B. Theta Gene description (DUF3876) DUF4387 PF14330.1 gi|330834124|ref|YP_004408852.1| - 0.1 12.9 0.1 0.12 12.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) TrmB PF01978.14 gi|330834125|ref|YP_004408853.1| - 3.7e-14 52.1 0.2 5.1e-14 51.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330834125|ref|YP_004408853.1| - 6.8e-08 32.0 0.0 1.1e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|330834125|ref|YP_004408853.1| - 1.7e-05 24.3 0.6 3.3e-05 23.4 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|330834125|ref|YP_004408853.1| - 4.5e-05 23.0 0.2 7.2e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|330834125|ref|YP_004408853.1| - 0.00024 20.5 0.1 0.00032 20.1 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|330834125|ref|YP_004408853.1| - 0.00049 20.3 0.0 0.0007 19.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain CENP-F_N PF10481.4 gi|330834125|ref|YP_004408853.1| - 0.0039 16.5 0.0 0.0045 16.3 0.0 1.1 1 0 0 1 1 1 1 Cenp-F N-terminal domain HTH_24 PF13412.1 gi|330834125|ref|YP_004408853.1| - 0.0046 16.3 0.4 0.0087 15.4 0.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|330834125|ref|YP_004408853.1| - 0.0056 16.4 0.1 0.0091 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF4423 PF14394.1 gi|330834125|ref|YP_004408853.1| - 0.014 14.9 0.3 0.025 14.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.14 gi|330834125|ref|YP_004408853.1| - 0.041 13.8 0.0 0.099 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain z-alpha PF02295.12 gi|330834125|ref|YP_004408853.1| - 0.079 12.7 0.3 0.15 11.8 0.0 1.6 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain Replic_Relax PF13814.1 gi|330834125|ref|YP_004408853.1| - 0.11 12.3 0.1 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Amidohydro_1 PF01979.15 gi|330834126|ref|YP_004408854.1| - 9.6e-34 117.5 0.0 1.2e-33 117.2 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|330834126|ref|YP_004408854.1| - 1.1e-09 38.0 0.1 3.4e-09 36.4 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|330834126|ref|YP_004408854.1| - 4.2e-09 36.1 0.0 3.7e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330834126|ref|YP_004408854.1| - 5.2e-08 33.2 0.0 0.00015 21.8 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase A_deaminase PF00962.17 gi|330834126|ref|YP_004408854.1| - 0.023 13.6 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Adenosine/AMP deaminase ATP_bind_4 PF01902.12 gi|330834127|ref|YP_004408855.1| - 1.7e-42 145.2 0.1 1.9e-42 145.1 0.1 1.0 1 0 0 1 1 1 1 ATP-binding region NTP_transf_3 PF12804.2 gi|330834128|ref|YP_004408856.1| - 2.9e-23 82.7 0.0 3.5e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.11 gi|330834128|ref|YP_004408856.1| - 0.048 12.6 0.0 0.082 11.8 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like MoeA_N PF03453.12 gi|330834129|ref|YP_004408857.1| - 6.3e-43 145.9 0.0 1.1e-42 145.1 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|330834129|ref|YP_004408857.1| - 4.6e-16 58.5 0.0 7.1e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MobB PF03205.9 gi|330834130|ref|YP_004408858.1| - 2.9e-23 82.1 0.0 3.8e-23 81.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DAP3 PF10236.4 gi|330834130|ref|YP_004408858.1| - 0.075 11.9 0.1 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Arch_ATPase PF01637.13 gi|330834130|ref|YP_004408858.1| - 0.12 12.0 0.1 0.27 10.8 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase CBS PF00571.23 gi|330834131|ref|YP_004408859.1| - 2.3e-13 49.6 2.0 2.1e-06 27.4 0.1 3.9 4 0 0 4 4 4 2 CBS domain NAD_kinase PF01513.16 gi|330834131|ref|YP_004408859.1| - 0.02 13.7 0.2 0.038 12.7 0.1 1.5 1 1 1 2 2 2 0 ATP-NAD kinase YmgB PF10798.3 gi|330834131|ref|YP_004408859.1| - 0.087 12.6 1.9 2.4 8.0 0.2 3.2 2 1 1 3 3 3 0 Biofilm development protein YmgB/AriR Methyltransf_11 PF08241.7 gi|330834132|ref|YP_004408860.1| - 1.9e-17 63.5 0.0 5.8e-17 61.9 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330834132|ref|YP_004408860.1| - 8.5e-09 35.3 0.0 1.2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330834132|ref|YP_004408860.1| - 3.6e-06 27.2 0.0 1e-05 25.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330834132|ref|YP_004408860.1| - 2.1e-05 24.8 0.0 3.2e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330834132|ref|YP_004408860.1| - 3.8e-05 23.3 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330834132|ref|YP_004408860.1| - 0.00031 19.9 0.0 0.00044 19.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.7 gi|330834132|ref|YP_004408860.1| - 0.025 13.4 0.0 0.032 13.1 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_18 PF12847.2 gi|330834132|ref|YP_004408860.1| - 0.073 13.6 0.0 0.21 12.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DUF456 PF04306.8 gi|330834134|ref|YP_004408862.1| - 0.014 15.4 1.5 0.019 15.0 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|330834134|ref|YP_004408862.1| - 0.027 14.5 3.6 0.044 13.9 2.5 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_YMGG PF13441.1 gi|330834134|ref|YP_004408862.1| - 0.081 12.4 2.8 0.14 11.6 2.0 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper YmdB PF13277.1 gi|330834135|ref|YP_004408863.1| - 0.0029 16.6 0.0 0.0033 16.4 0.0 1.0 1 0 0 1 1 1 1 YmdB-like protein Fe_dep_repr_C PF02742.10 gi|330834136|ref|YP_004408864.1| - 7.3e-27 92.8 0.4 1.5e-26 91.8 0.1 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|330834136|ref|YP_004408864.1| - 1.3e-12 47.4 0.2 3.5e-12 46.0 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|330834136|ref|YP_004408864.1| - 8.5e-07 28.5 0.0 2.2e-06 27.2 0.0 1.7 1 0 0 1 1 1 1 MarR family FeoA PF04023.9 gi|330834136|ref|YP_004408864.1| - 4.3e-06 26.6 1.7 2.2e-05 24.3 0.3 2.3 2 1 0 2 2 2 1 FeoA domain MarR_2 PF12802.2 gi|330834136|ref|YP_004408864.1| - 5.4e-06 25.9 0.1 1.6e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|330834136|ref|YP_004408864.1| - 7.6e-06 26.1 0.2 2.2e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330834136|ref|YP_004408864.1| - 0.00011 21.4 0.0 0.00029 20.1 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|330834136|ref|YP_004408864.1| - 0.00046 19.8 0.0 0.00082 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|330834136|ref|YP_004408864.1| - 0.00073 18.9 0.0 0.0039 16.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_41 PF14502.1 gi|330834136|ref|YP_004408864.1| - 0.004 16.7 0.0 0.0087 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|330834136|ref|YP_004408864.1| - 0.0052 16.5 0.0 0.0087 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix AAA_assoc_C PF09821.4 gi|330834136|ref|YP_004408864.1| - 0.0056 16.9 0.0 0.009 16.2 0.0 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_DeoR PF08220.7 gi|330834136|ref|YP_004408864.1| - 0.0062 16.0 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|330834136|ref|YP_004408864.1| - 0.0071 16.0 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.11 gi|330834136|ref|YP_004408864.1| - 0.008 16.2 0.1 0.03 14.3 0.0 2.0 2 0 0 2 2 2 1 HemN C-terminal domain HTH_Crp_2 PF13545.1 gi|330834136|ref|YP_004408864.1| - 0.0086 15.8 0.0 0.026 14.3 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|330834136|ref|YP_004408864.1| - 0.013 15.1 0.1 0.036 13.6 0.1 1.7 1 0 0 1 1 1 0 HTH domain FeoC PF09012.5 gi|330834136|ref|YP_004408864.1| - 0.022 14.4 0.0 0.039 13.6 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4423 PF14394.1 gi|330834136|ref|YP_004408864.1| - 0.027 14.0 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) PadR PF03551.9 gi|330834136|ref|YP_004408864.1| - 0.04 13.7 0.0 0.23 11.2 0.0 2.2 1 1 0 2 2 2 0 Transcriptional regulator PadR-like family DUF2250 PF10007.4 gi|330834136|ref|YP_004408864.1| - 0.043 13.7 0.6 0.66 9.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|330834136|ref|YP_004408864.1| - 0.054 13.2 0.0 0.26 11.0 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.1 gi|330834136|ref|YP_004408864.1| - 0.086 12.9 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|330834137|ref|YP_004408865.1| - 0.032 14.1 0.1 0.11 12.3 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4147 PF13660.1 gi|330834138|ref|YP_004408866.1| - 1.4e-52 178.2 0.0 1.7e-52 177.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|330834138|ref|YP_004408866.1| - 1.5e-29 102.1 0.0 3e-29 101.2 0.0 1.5 1 0 0 1 1 1 1 MOFRL family Oxidored_q6 PF01058.17 gi|330834139|ref|YP_004408867.1| - 1e-21 76.8 0.0 1.4e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.13 gi|330834140|ref|YP_004408868.1| - 1e-56 190.9 0.0 1.6e-56 190.4 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.8 gi|330834140|ref|YP_004408868.1| - 1.2e-29 102.9 0.0 2.1e-29 102.1 0.0 1.4 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding BPL_LplA_LipB PF03099.14 gi|330834141|ref|YP_004408869.1| - 4.7e-20 71.8 0.8 7.9e-20 71.1 0.1 1.6 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family G5 PF07501.7 gi|330834141|ref|YP_004408869.1| - 0.18 11.7 1.5 1.5 8.8 0.1 2.7 2 1 0 2 2 2 0 G5 domain Pyr_redox_2 PF07992.9 gi|330834142|ref|YP_004408870.1| - 1e-27 97.3 8.2 3.9e-26 92.1 5.7 3.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330834142|ref|YP_004408870.1| - 6.7e-19 68.0 1.9 3.3e-12 46.6 0.1 3.3 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330834142|ref|YP_004408870.1| - 6.1e-14 51.9 0.1 3.5e-13 49.5 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|330834142|ref|YP_004408870.1| - 1.3e-13 50.6 4.7 1.5e-05 24.0 0.4 3.6 4 0 0 4 4 4 3 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|330834142|ref|YP_004408870.1| - 4e-11 42.7 4.3 7.9e-08 32.2 0.2 2.8 3 0 0 3 3 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|330834142|ref|YP_004408870.1| - 2e-10 40.3 3.0 3.1e-10 39.7 0.4 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330834142|ref|YP_004408870.1| - 5.2e-08 32.1 6.7 2.8e-06 26.4 0.7 3.1 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.14 gi|330834142|ref|YP_004408870.1| - 6.5e-08 32.0 0.9 0.0059 15.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|330834142|ref|YP_004408870.1| - 3.9e-07 30.3 0.5 1.4e-06 28.5 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834142|ref|YP_004408870.1| - 9.7e-07 27.9 5.9 0.00037 19.5 0.2 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330834142|ref|YP_004408870.1| - 2.4e-06 26.3 4.5 1.4e-05 23.8 0.2 2.8 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.12 gi|330834142|ref|YP_004408870.1| - 5.7e-06 25.5 1.5 0.00063 18.9 0.2 2.4 2 0 0 2 2 2 2 Thi4 family Amino_oxidase PF01593.19 gi|330834142|ref|YP_004408870.1| - 0.00063 18.9 0.0 0.69 8.9 0.0 2.2 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase 3HCDH_N PF02737.13 gi|330834142|ref|YP_004408870.1| - 0.0029 17.2 1.1 1.3 8.6 0.0 2.6 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|330834142|ref|YP_004408870.1| - 0.0064 16.7 0.1 2.7 8.2 0.0 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding ApbA PF02558.11 gi|330834142|ref|YP_004408870.1| - 0.018 14.4 0.9 1.2 8.5 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Methyltransf_18 PF12847.2 gi|330834142|ref|YP_004408870.1| - 0.045 14.3 0.1 1.9 9.0 0.0 2.7 2 1 0 2 2 2 0 Methyltransferase domain NAD_binding_9 PF13454.1 gi|330834142|ref|YP_004408870.1| - 0.19 11.5 0.4 4.5 7.0 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding Usp PF00582.21 gi|330834143|ref|YP_004408871.1| - 2.3e-37 128.3 0.2 2.6e-37 128.1 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PmbA_TldD PF01523.11 gi|330834144|ref|YP_004408872.1| - 3e-40 138.3 1.0 3.8e-40 137.9 0.7 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|330834145|ref|YP_004408873.1| - 1.7e-44 152.2 1.1 2.1e-44 152.0 0.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NikR_C PF08753.6 gi|330834146|ref|YP_004408874.1| - 2.1e-20 72.3 0.8 2.1e-20 72.3 0.5 1.7 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|330834146|ref|YP_004408874.1| - 4.1e-05 23.2 2.6 5.4e-05 22.8 1.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|330834146|ref|YP_004408874.1| - 0.0053 16.4 0.6 0.012 15.3 0.4 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix domain DUF3203 PF11462.3 gi|330834146|ref|YP_004408874.1| - 0.062 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) YscJ_FliF PF01514.12 gi|330834146|ref|YP_004408874.1| - 0.098 11.8 0.1 0.24 10.5 0.0 1.7 2 0 0 2 2 2 0 Secretory protein of YscJ/FliF family MGAT2 PF05060.9 gi|330834146|ref|YP_004408874.1| - 0.098 11.5 0.1 0.13 11.1 0.1 1.2 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) B3_4 PF03483.12 gi|330834147|ref|YP_004408875.1| - 2.6e-27 95.4 0.0 4e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Homoserine_dh PF00742.14 gi|330834148|ref|YP_004408876.1| - 1.7e-49 167.9 0.0 3e-49 167.1 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|330834148|ref|YP_004408876.1| - 3.9e-11 43.3 0.0 6.6e-11 42.6 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|330834148|ref|YP_004408876.1| - 0.077 12.8 0.3 20 4.9 0.0 2.9 3 1 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UbiA PF01040.13 gi|330834149|ref|YP_004408877.1| - 3.3e-29 101.9 23.5 4.4e-29 101.4 16.3 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Jiraiya PF15038.1 gi|330834149|ref|YP_004408877.1| - 0.0014 18.0 1.6 0.0014 18.0 0.1 1.7 2 0 0 2 2 2 1 Jiraiya ECH PF00378.15 gi|330834150|ref|YP_004408878.1| - 3.6e-77 258.8 0.0 4.1e-77 258.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|330834150|ref|YP_004408878.1| - 0.00023 21.2 0.0 0.0004 20.5 0.0 1.4 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region Peptidase_S49 PF01343.13 gi|330834150|ref|YP_004408878.1| - 0.083 12.6 0.0 6.1 6.6 0.0 2.2 2 0 0 2 2 2 0 Peptidase family S49 Radical_SAM PF04055.16 gi|330834152|ref|YP_004408880.1| - 8.3e-16 58.5 0.0 1.9e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330834152|ref|YP_004408880.1| - 0.0012 18.9 0.0 0.0093 16.0 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain DZR PF12773.2 gi|330834152|ref|YP_004408880.1| - 0.0073 16.1 0.1 0.0073 16.1 0.1 2.7 3 0 0 3 3 3 1 Double zinc ribbon DRP PF06044.7 gi|330834152|ref|YP_004408880.1| - 0.045 12.7 0.5 0.093 11.7 0.1 1.6 2 0 0 2 2 2 0 Dam-replacing family TF_Zn_Ribbon PF08271.7 gi|330834152|ref|YP_004408880.1| - 0.074 12.3 3.8 0.21 10.9 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|330834152|ref|YP_004408880.1| - 0.087 12.0 7.0 0.14 11.3 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|330834152|ref|YP_004408880.1| - 5 6.9 7.2 1.1 8.9 1.2 2.6 2 1 1 3 3 3 0 Uncharacterised protein family UPF0547 Adenosine_kin PF04008.9 gi|330834153|ref|YP_004408881.1| - 2.5e-77 257.6 0.1 2.8e-77 257.5 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase Y_Y_Y PF07495.8 gi|330834154|ref|YP_004408882.1| - 7e-05 22.5 0.6 0.29 10.9 0.0 2.7 2 0 0 2 2 2 2 Y_Y_Y domain DUF4493 PF14900.1 gi|330834154|ref|YP_004408882.1| - 0.0084 15.7 0.2 0.032 13.8 0.0 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF4493) CarboxypepD_reg PF13620.1 gi|330834154|ref|YP_004408882.1| - 0.02 14.9 1.9 0.036 14.1 0.3 2.0 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain Big_3_4 PF13754.1 gi|330834154|ref|YP_004408882.1| - 0.16 12.3 3.9 0.56 10.5 0.1 2.7 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 3) VIT1 PF01988.14 gi|330834155|ref|YP_004408883.1| - 5e-12 45.7 16.4 9.6e-11 41.5 11.3 2.0 1 1 0 1 1 1 1 VIT family DUF3735 PF12537.3 gi|330834155|ref|YP_004408883.1| - 0.15 12.1 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3735) DUF360 PF04020.8 gi|330834155|ref|YP_004408883.1| - 0.31 11.4 13.0 0.12 12.6 3.0 2.2 2 0 0 2 2 2 0 Membrane protein of unknown function DUF4491 PF14898.1 gi|330834155|ref|YP_004408883.1| - 6.3 7.0 7.3 21 5.3 0.9 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4491) Cupin_2 PF07883.6 gi|330834156|ref|YP_004408884.1| - 1e-15 56.9 0.2 1.4e-15 56.4 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|330834156|ref|YP_004408884.1| - 5.3e-12 45.3 0.0 1.1e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|330834156|ref|YP_004408884.1| - 2.1e-09 37.1 0.0 3.1e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.3 gi|330834156|ref|YP_004408884.1| - 5.5e-07 29.4 0.1 1.1e-06 28.4 0.0 1.5 2 0 0 2 2 2 1 Mif2/CENP-C like Asp_Arg_Hydrox PF05118.10 gi|330834156|ref|YP_004408884.1| - 0.0005 19.9 0.0 0.0014 18.4 0.0 1.7 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase MannoseP_isomer PF01050.13 gi|330834156|ref|YP_004408884.1| - 0.0029 17.2 0.1 0.0055 16.3 0.0 1.5 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.11 gi|330834156|ref|YP_004408884.1| - 0.0032 16.9 0.9 0.048 13.0 0.1 2.6 1 1 1 2 2 2 1 Auxin binding protein ARD PF03079.9 gi|330834156|ref|YP_004408884.1| - 0.005 16.7 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 ARD/ARD' family Ribosomal_L7Ae PF01248.21 gi|330834156|ref|YP_004408884.1| - 0.048 13.1 0.2 0.074 12.5 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 3HCDH_N PF02737.13 gi|330834157|ref|YP_004408885.1| - 3e-55 186.6 0.1 4.4e-55 186.1 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|330834157|ref|YP_004408885.1| - 4.6e-18 65.3 0.1 1.1e-17 64.2 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|330834157|ref|YP_004408885.1| - 2.3e-08 33.9 0.1 7.6e-08 32.2 0.0 1.7 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|330834157|ref|YP_004408885.1| - 2.3e-05 24.3 0.1 0.00016 21.5 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|330834157|ref|YP_004408885.1| - 0.00021 21.6 0.0 0.0007 19.9 0.0 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|330834157|ref|YP_004408885.1| - 0.002 17.5 0.2 0.005 16.3 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|330834157|ref|YP_004408885.1| - 0.01 15.2 0.4 0.024 14.0 0.2 1.8 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|330834157|ref|YP_004408885.1| - 0.015 14.2 0.2 0.022 13.6 0.1 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A F420_oxidored PF03807.12 gi|330834157|ref|YP_004408885.1| - 0.022 15.1 0.1 0.08 13.3 0.0 2.1 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|330834157|ref|YP_004408885.1| - 0.036 12.9 0.3 0.057 12.3 0.2 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|330834157|ref|YP_004408885.1| - 0.047 13.9 0.5 0.14 12.3 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|330834157|ref|YP_004408885.1| - 0.062 12.4 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|330834157|ref|YP_004408885.1| - 0.068 13.0 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Translin PF01997.11 gi|330834158|ref|YP_004408886.1| - 7.8e-31 107.2 0.6 1.2e-30 106.6 0.0 1.5 2 0 0 2 2 2 1 Translin family DUF2183 PF09949.4 gi|330834158|ref|YP_004408886.1| - 0.14 12.1 0.1 4.1 7.4 0.0 2.6 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2183) COG5 PF10392.4 gi|330834158|ref|YP_004408886.1| - 0.16 11.9 0.5 0.26 11.2 0.3 1.3 1 0 0 1 1 1 0 Golgi transport complex subunit 5 RimK PF08443.6 gi|330834159|ref|YP_004408887.1| - 1.1e-40 139.1 0.0 1.5e-39 135.4 0.0 2.0 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330834159|ref|YP_004408887.1| - 5.1e-09 35.3 0.0 1e-08 34.3 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|330834159|ref|YP_004408887.1| - 1.3e-08 34.7 0.0 2e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330834159|ref|YP_004408887.1| - 1.5e-08 34.6 0.0 4.1e-08 33.2 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|330834159|ref|YP_004408887.1| - 2e-08 33.5 0.0 3.2e-08 32.8 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330834159|ref|YP_004408887.1| - 0.05 12.8 0.0 0.092 12.0 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|330834159|ref|YP_004408887.1| - 0.055 12.8 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|330834159|ref|YP_004408887.1| - 0.07 12.3 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330834160|ref|YP_004408888.1| - 3.2e-96 320.6 0.0 7e-67 224.7 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.14 gi|330834160|ref|YP_004408888.1| - 4.1e-36 123.4 0.1 1.5e-35 121.6 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPSase_L_chain PF00289.17 gi|330834160|ref|YP_004408888.1| - 4.6e-33 113.6 0.0 2.4e-18 66.2 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|330834160|ref|YP_004408888.1| - 2.4e-31 108.9 0.0 3.1e-16 59.6 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330834160|ref|YP_004408888.1| - 7.6e-24 84.0 0.0 6.1e-15 54.7 0.0 3.8 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|330834160|ref|YP_004408888.1| - 1.9e-20 72.8 0.0 2.2e-10 40.1 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|330834160|ref|YP_004408888.1| - 4.4e-15 55.6 0.0 4.3e-10 39.3 0.0 2.8 2 1 0 2 2 2 2 RimK-like ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330834160|ref|YP_004408888.1| - 5.7e-14 51.9 0.2 2.1e-07 30.5 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|330834160|ref|YP_004408888.1| - 1.1e-10 41.6 0.2 1.3e-05 25.1 0.0 2.9 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.14 gi|330834160|ref|YP_004408888.1| - 2.5e-08 33.7 0.1 0.00078 19.0 0.0 3.5 2 1 1 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|330834160|ref|YP_004408888.1| - 1e-05 24.8 0.0 0.0057 15.8 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp domain MGS PF02142.17 gi|330834160|ref|YP_004408888.1| - 0.0063 16.4 0.0 0.15 12.0 0.0 3.0 2 0 0 2 2 2 1 MGS-like domain ATP-grasp_2 PF08442.5 gi|330834160|ref|YP_004408888.1| - 0.015 14.7 0.0 0.21 10.9 0.0 2.3 2 0 0 2 2 2 0 ATP-grasp domain GSH-S_ATP PF02955.11 gi|330834160|ref|YP_004408888.1| - 0.029 13.5 0.0 0.093 11.8 0.0 1.9 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain Epimerase PF01370.16 gi|330834160|ref|YP_004408888.1| - 0.056 12.8 0.0 3.2 7.1 0.0 2.5 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family CPSase_sm_chain PF00988.17 gi|330834161|ref|YP_004408889.1| - 6e-45 151.9 0.0 9.6e-45 151.2 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|330834161|ref|YP_004408889.1| - 3.6e-40 137.4 0.0 5.1e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330834161|ref|YP_004408889.1| - 2e-05 24.1 0.2 0.00054 19.4 0.2 2.3 1 1 0 1 1 1 1 Peptidase C26 Lyase_1 PF00206.15 gi|330834162|ref|YP_004408890.1| - 1.1e-38 133.2 0.3 2e-38 132.3 0.2 1.5 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|330834162|ref|YP_004408890.1| - 5.4e-05 23.1 0.0 0.00017 21.6 0.0 1.9 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal AF0941-like PF14591.1 gi|330834162|ref|YP_004408890.1| - 0.00018 21.5 1.6 0.00077 19.5 0.2 2.5 2 0 0 2 2 2 1 AF0941-like Arginosuc_synth PF00764.14 gi|330834163|ref|YP_004408891.1| - 1.5e-138 462.1 0.0 1.7e-138 461.8 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.8 gi|330834163|ref|YP_004408891.1| - 0.00071 18.9 0.1 0.0031 16.8 0.0 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|330834163|ref|YP_004408891.1| - 0.059 12.8 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase DUF3505 PF12013.3 gi|330834164|ref|YP_004408892.1| - 0.0028 17.8 0.3 0.0051 17.0 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3505) PapB PF03333.8 gi|330834164|ref|YP_004408892.1| - 0.014 15.2 0.0 0.13 12.1 0.0 2.2 1 1 1 2 2 2 0 Adhesin biosynthesis transcription regulatory protein Ig_2 PF13895.1 gi|330834164|ref|YP_004408892.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Immunoglobulin domain TF_Zn_Ribbon PF08271.7 gi|330834164|ref|YP_004408892.1| - 0.15 11.3 0.6 0.28 10.5 0.4 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding AIRS_C PF02769.17 gi|330834165|ref|YP_004408893.1| - 9.6e-23 80.8 0.0 1.5e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330834165|ref|YP_004408893.1| - 2.2e-15 56.6 0.4 3.9e-15 55.8 0.2 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GARS_A PF01071.14 gi|330834166|ref|YP_004408894.1| - 2.4e-39 134.9 0.0 3.7e-39 134.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|330834166|ref|YP_004408894.1| - 1.4e-21 76.8 0.0 2.6e-21 75.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|330834166|ref|YP_004408894.1| - 5e-10 39.4 0.0 2e-09 37.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|330834166|ref|YP_004408894.1| - 1.1e-08 35.0 0.0 2e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330834166|ref|YP_004408894.1| - 2.8e-05 23.0 0.0 4.3e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|330834166|ref|YP_004408894.1| - 0.0013 18.0 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|330834166|ref|YP_004408894.1| - 0.039 13.8 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330834166|ref|YP_004408894.1| - 0.041 13.2 0.1 0.11 11.8 0.1 1.7 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|330834166|ref|YP_004408894.1| - 0.15 11.1 0.0 0.25 10.3 0.0 1.3 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Pribosyltran PF00156.22 gi|330834167|ref|YP_004408895.1| - 2.8e-16 59.3 0.1 7.7e-16 57.9 0.1 1.7 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|330834167|ref|YP_004408895.1| - 0.00017 20.9 0.0 0.00064 19.0 0.0 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase GATase_7 PF13537.1 gi|330834167|ref|YP_004408895.1| - 0.0011 18.7 0.0 0.0019 17.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330834167|ref|YP_004408895.1| - 0.079 11.6 0.0 1.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|330834167|ref|YP_004408895.1| - 0.088 12.7 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330834168|ref|YP_004408896.1| - 3e-13 49.2 0.1 1.9e-06 26.8 0.0 3.2 3 0 0 3 3 3 3 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|330834168|ref|YP_004408896.1| - 7.9e-13 48.2 0.1 1.4e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_6 PF13522.1 gi|330834168|ref|YP_004408896.1| - 2.9e-11 43.4 0.0 7.5e-11 42.1 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|330834168|ref|YP_004408896.1| - 2e-10 40.4 0.0 2.1e-09 37.1 0.0 2.3 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|330834168|ref|YP_004408896.1| - 0.018 13.7 0.0 0.034 12.8 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferases class-II PRTase_2 PF15609.1 gi|330834168|ref|YP_004408896.1| - 0.059 12.6 0.0 0.098 11.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase AIRS_C PF02769.17 gi|330834169|ref|YP_004408897.1| - 3.8e-36 124.4 0.0 1.4e-25 90.1 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330834169|ref|YP_004408897.1| - 3.9e-36 123.1 0.1 2.5e-22 78.9 0.1 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain GATase_5 PF13507.1 gi|330834170|ref|YP_004408898.1| - 8.6e-43 146.1 0.0 1.1e-42 145.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|330834170|ref|YP_004408898.1| - 4.1e-10 39.3 0.0 1.1e-09 37.9 0.0 1.6 1 1 1 2 2 2 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|330834170|ref|YP_004408898.1| - 2.6e-07 30.3 0.0 6e-07 29.1 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|330834170|ref|YP_004408898.1| - 1e-05 25.1 0.0 1.5e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DUF4066 PF13278.1 gi|330834170|ref|YP_004408898.1| - 0.0022 17.2 0.0 0.0034 16.6 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase MT-A70 PF05063.9 gi|330834170|ref|YP_004408898.1| - 0.14 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 MT-A70 PurS PF02700.9 gi|330834171|ref|YP_004408899.1| - 6.2e-17 61.3 2.4 7.2e-17 61.1 1.7 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2204 PF09970.4 gi|330834171|ref|YP_004408899.1| - 0.087 12.2 1.7 0.091 12.2 1.2 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) SAICAR_synt PF01259.13 gi|330834172|ref|YP_004408900.1| - 2.1e-50 171.1 0.0 2.3e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase tRNA_bind PF01588.15 gi|330834173|ref|YP_004408901.1| - 1.2e-27 95.5 0.1 1.4e-27 95.3 0.0 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain MMR_HSR1 PF01926.18 gi|330834174|ref|YP_004408902.1| - 2.1e-19 69.5 0.1 3.6e-19 68.8 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|330834174|ref|YP_004408902.1| - 8.8e-18 63.9 0.1 1.9e-17 62.9 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|330834174|ref|YP_004408902.1| - 7e-13 48.1 0.0 1.1e-12 47.4 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|330834174|ref|YP_004408902.1| - 2.8e-06 26.8 0.1 0.00031 20.2 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|330834174|ref|YP_004408902.1| - 4.1e-05 24.0 0.0 9.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein AIG1 PF04548.11 gi|330834174|ref|YP_004408902.1| - 5.4e-05 22.3 0.0 9e-05 21.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Gtr1_RagA PF04670.7 gi|330834174|ref|YP_004408902.1| - 8.4e-05 21.8 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_17 PF13207.1 gi|330834174|ref|YP_004408902.1| - 0.0012 19.6 0.3 0.0035 18.1 0.0 2.0 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|330834174|ref|YP_004408902.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.4 1 0 0 1 1 1 1 NTPase AAA PF00004.24 gi|330834174|ref|YP_004408902.1| - 0.0031 17.7 0.1 0.014 15.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Dynamin_N PF00350.18 gi|330834174|ref|YP_004408902.1| - 0.0068 16.2 1.2 0.18 11.5 0.0 2.4 1 1 1 2 2 2 1 Dynamin family Arch_ATPase PF01637.13 gi|330834174|ref|YP_004408902.1| - 0.0094 15.6 0.0 0.021 14.5 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|330834174|ref|YP_004408902.1| - 0.01 15.8 0.1 0.036 14.0 0.0 2.2 2 1 0 2 2 1 1 AAA ATPase domain ATP_bind_1 PF03029.12 gi|330834174|ref|YP_004408902.1| - 0.012 15.1 0.0 4.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|330834174|ref|YP_004408902.1| - 0.013 15.1 0.0 0.026 14.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|330834174|ref|YP_004408902.1| - 0.015 14.8 0.0 0.027 13.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|330834174|ref|YP_004408902.1| - 0.023 15.0 1.6 0.081 13.2 0.0 2.6 2 2 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|330834174|ref|YP_004408902.1| - 0.046 12.9 0.0 0.076 12.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_22 PF13401.1 gi|330834174|ref|YP_004408902.1| - 0.054 13.6 0.0 0.35 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|330834174|ref|YP_004408902.1| - 0.056 12.6 0.2 0.27 10.4 0.1 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|330834174|ref|YP_004408902.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.6 1 1 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.1 gi|330834174|ref|YP_004408902.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330834174|ref|YP_004408902.1| - 0.13 11.6 0.0 0.37 10.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|330834174|ref|YP_004408902.1| - 0.2 11.9 1.6 1.5 9.1 0.1 2.4 1 1 1 2 2 2 0 AAA domain Fer4_14 PF13394.1 gi|330834175|ref|YP_004408903.1| - 3.1e-20 72.3 0.0 5.2e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|330834175|ref|YP_004408903.1| - 5.5e-15 55.9 0.0 9.5e-15 55.1 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330834175|ref|YP_004408903.1| - 1.6e-09 38.0 0.0 2.1e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TFIIE_beta PF02186.10 gi|330834175|ref|YP_004408903.1| - 0.034 14.1 0.0 0.52 10.3 0.0 2.6 2 0 0 2 2 2 0 TFIIE beta subunit core domain Pyr_redox_2 PF07992.9 gi|330834177|ref|YP_004408905.1| - 1.3e-37 129.6 1.2 1.5e-37 129.4 0.2 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330834177|ref|YP_004408905.1| - 1.7e-25 89.1 0.5 4e-25 87.9 0.4 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|330834177|ref|YP_004408905.1| - 1.9e-23 82.6 8.6 3.5e-18 65.7 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330834177|ref|YP_004408905.1| - 2.3e-13 49.7 8.8 3.5e-10 39.2 0.6 3.4 2 1 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|330834177|ref|YP_004408905.1| - 1.1e-10 41.9 0.0 2.2e-10 40.9 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|330834177|ref|YP_004408905.1| - 9.7e-10 37.8 8.0 3e-06 26.3 1.8 3.6 4 0 0 4 4 4 2 FAD binding domain DAO PF01266.19 gi|330834177|ref|YP_004408905.1| - 1.7e-09 37.1 6.1 4.6e-08 32.3 0.4 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330834177|ref|YP_004408905.1| - 1.7e-08 34.3 2.3 0.00071 19.5 0.9 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|330834177|ref|YP_004408905.1| - 3.7e-08 32.8 4.0 5.7e-08 32.2 1.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330834177|ref|YP_004408905.1| - 2.3e-07 29.6 7.6 0.00024 19.6 0.6 3.8 4 0 0 4 4 4 2 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|330834177|ref|YP_004408905.1| - 2.4e-06 27.2 0.8 0.062 12.8 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|330834177|ref|YP_004408905.1| - 1.2e-05 24.5 0.8 0.005 15.9 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|330834177|ref|YP_004408905.1| - 5.8e-05 22.1 0.3 0.059 12.2 0.0 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|330834177|ref|YP_004408905.1| - 0.00017 20.3 1.6 0.015 13.9 0.2 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.12 gi|330834177|ref|YP_004408905.1| - 0.00064 18.8 0.7 0.15 11.1 0.3 2.5 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|330834177|ref|YP_004408905.1| - 0.0031 17.1 3.8 0.25 10.9 0.0 2.7 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|330834177|ref|YP_004408905.1| - 0.0082 16.3 0.4 4.6 7.5 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding IGR PF09597.5 gi|330834177|ref|YP_004408905.1| - 0.013 15.3 0.3 2 8.3 0.0 3.6 3 0 0 3 3 3 0 IGR protein motif TrkA_N PF02254.13 gi|330834177|ref|YP_004408905.1| - 0.14 12.1 4.5 2.5 8.1 0.0 3.0 4 0 0 4 4 2 0 TrkA-N domain HTH_5 PF01022.15 gi|330834178|ref|YP_004408906.1| - 2e-07 30.5 0.2 3e-07 30.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330834178|ref|YP_004408906.1| - 2.2e-05 24.1 0.1 3.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330834178|ref|YP_004408906.1| - 0.024 14.3 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|330834178|ref|YP_004408906.1| - 0.05 13.4 0.3 0.087 12.6 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_9 PF08221.6 gi|330834178|ref|YP_004408906.1| - 0.054 13.3 0.9 0.098 12.5 0.6 1.5 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TFIIE_alpha PF02002.12 gi|330834178|ref|YP_004408906.1| - 0.11 11.9 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit APG17 PF04108.7 gi|330834179|ref|YP_004408907.1| - 0.003 16.4 2.6 0.0044 15.8 1.7 1.5 1 1 0 1 1 1 1 Autophagy protein Apg17 DUF2670 PF10875.3 gi|330834179|ref|YP_004408907.1| - 0.0072 16.3 0.0 0.0098 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2670) PhoU PF01895.14 gi|330834180|ref|YP_004408908.1| - 5.5e-26 90.8 1.3 4.1e-17 62.4 1.8 2.3 2 0 0 2 2 2 2 PhoU domain OMPdecase PF00215.19 gi|330834182|ref|YP_004408910.1| - 5.3e-24 84.8 0.0 7.1e-24 84.4 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.22 gi|330834183|ref|YP_004408911.1| - 6.7e-18 64.6 2.7 1e-17 64.0 0.6 2.1 2 1 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330834183|ref|YP_004408911.1| - 0.0028 16.8 0.0 0.0035 16.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase OTCace_N PF02729.16 gi|330834184|ref|YP_004408912.1| - 3.7e-40 136.8 0.0 5.9e-40 136.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|330834184|ref|YP_004408912.1| - 6.7e-28 97.5 0.0 1.1e-27 96.7 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|330834185|ref|YP_004408913.1| - 4.3e-35 119.6 3.4 5.6e-35 119.2 2.4 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|330834185|ref|YP_004408913.1| - 1.5e-16 59.5 0.9 2.4e-16 58.8 0.6 1.3 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DHODB_Fe-S_bind PF10418.4 gi|330834186|ref|YP_004408914.1| - 0.00013 21.3 5.0 0.00013 21.3 3.5 1.7 2 0 0 2 2 2 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Amidohydro_1 PF01979.15 gi|330834187|ref|YP_004408915.1| - 1.9e-13 50.7 0.0 2e-07 31.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|330834187|ref|YP_004408915.1| - 6.9e-12 45.9 0.2 4.1e-07 30.2 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|330834187|ref|YP_004408915.1| - 0.00012 21.4 0.0 0.21 10.7 0.0 2.5 2 1 0 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|330834187|ref|YP_004408915.1| - 0.0094 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase PAGK PF15284.1 gi|330834187|ref|YP_004408915.1| - 0.16 11.7 0.0 0.36 10.5 0.0 1.5 1 0 0 1 1 1 0 Phage-encoded virulence factor DHO_dh PF01180.16 gi|330834188|ref|YP_004408916.1| - 6.6e-42 143.4 0.1 1.6e-41 142.2 0.0 1.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase DUF972 PF06156.8 gi|330834190|ref|YP_004408918.1| - 0.00071 19.8 4.2 0.00071 19.8 2.9 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF972) HALZ PF02183.13 gi|330834190|ref|YP_004408918.1| - 0.0018 17.9 1.2 0.0018 17.9 0.8 2.2 3 0 0 3 3 2 1 Homeobox associated leucine zipper bZIP_1 PF00170.16 gi|330834190|ref|YP_004408918.1| - 0.0036 17.2 2.3 0.0036 17.2 1.6 2.4 2 1 1 3 3 2 1 bZIP transcription factor DUF904 PF06005.7 gi|330834190|ref|YP_004408918.1| - 0.0055 16.9 10.4 0.22 11.8 3.7 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF904) bZIP_2 PF07716.10 gi|330834190|ref|YP_004408918.1| - 0.011 15.5 2.3 0.011 15.5 1.6 2.2 1 1 1 2 2 2 0 Basic region leucine zipper DivIC PF04977.10 gi|330834190|ref|YP_004408918.1| - 0.012 15.0 2.3 0.012 15.0 1.6 2.7 2 1 1 3 3 3 0 Septum formation initiator UPF0240 PF06784.6 gi|330834190|ref|YP_004408918.1| - 0.015 14.9 4.2 0.019 14.6 2.9 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) FH2 PF02181.18 gi|330834190|ref|YP_004408918.1| - 0.022 13.6 2.4 0.027 13.3 1.7 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain TMCO5 PF14992.1 gi|330834190|ref|YP_004408918.1| - 0.024 13.7 8.4 0.029 13.5 5.8 1.0 1 0 0 1 1 1 0 TMCO5 family ADIP PF11559.3 gi|330834190|ref|YP_004408918.1| - 0.027 14.3 6.0 0.17 11.8 3.8 2.0 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding ASL_C PF08328.6 gi|330834190|ref|YP_004408918.1| - 0.029 14.1 0.5 0.039 13.7 0.3 1.4 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminal COG5 PF10392.4 gi|330834190|ref|YP_004408918.1| - 0.041 13.8 2.9 0.066 13.1 2.0 1.5 1 1 0 1 1 1 0 Golgi transport complex subunit 5 IncA PF04156.9 gi|330834190|ref|YP_004408918.1| - 0.056 13.0 6.3 0.077 12.5 4.4 1.3 1 0 0 1 1 1 0 IncA protein DUF3086 PF11285.3 gi|330834190|ref|YP_004408918.1| - 0.062 12.0 1.0 0.081 11.7 0.3 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) Ribonucleas_3_2 PF11469.3 gi|330834190|ref|YP_004408918.1| - 0.084 13.0 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease III DUF1664 PF07889.7 gi|330834190|ref|YP_004408918.1| - 0.089 12.5 2.7 0.094 12.5 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF2681 PF10883.3 gi|330834190|ref|YP_004408918.1| - 0.093 12.9 2.5 0.071 13.3 0.6 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2681) Reo_sigmaC PF04582.7 gi|330834190|ref|YP_004408918.1| - 0.1 11.7 0.6 0.11 11.6 0.4 1.1 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Atg14 PF10186.4 gi|330834190|ref|YP_004408918.1| - 0.11 11.4 4.0 0.13 11.2 2.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 STAT_alpha PF01017.15 gi|330834190|ref|YP_004408918.1| - 0.11 12.1 3.7 0.093 12.4 1.8 1.4 1 1 0 1 1 1 0 STAT protein, all-alpha domain BBP1_C PF15272.1 gi|330834190|ref|YP_004408918.1| - 0.12 11.9 9.2 0.45 10.0 2.3 2.0 2 0 0 2 2 2 0 Spindle pole body component BBP1, C-terminal DUF342 PF03961.8 gi|330834190|ref|YP_004408918.1| - 0.14 10.5 3.7 0.16 10.3 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Seryl_tRNA_N PF02403.17 gi|330834190|ref|YP_004408918.1| - 0.14 12.1 7.4 1.7 8.7 2.6 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TSC22 PF01166.13 gi|330834190|ref|YP_004408918.1| - 0.15 12.0 4.4 0.075 13.0 1.2 1.9 2 1 0 2 2 1 0 TSC-22/dip/bun family DivIVA PF05103.8 gi|330834190|ref|YP_004408918.1| - 0.18 11.8 7.0 0.099 12.6 3.2 1.7 1 1 1 2 2 2 0 DivIVA protein Mnd1 PF03962.10 gi|330834190|ref|YP_004408918.1| - 0.2 11.2 3.9 0.27 10.8 2.7 1.2 1 0 0 1 1 1 0 Mnd1 family APG6 PF04111.7 gi|330834190|ref|YP_004408918.1| - 0.22 10.5 7.4 0.25 10.3 5.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Syntaxin-6_N PF09177.6 gi|330834190|ref|YP_004408918.1| - 0.29 11.5 3.1 0.44 10.9 0.9 2.0 1 1 1 2 2 2 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|330834190|ref|YP_004408918.1| - 0.3 11.0 6.8 0.15 11.9 1.6 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Syntaxin PF00804.20 gi|330834190|ref|YP_004408918.1| - 0.34 11.0 4.5 0.74 10.0 3.1 1.6 1 1 0 1 1 1 0 Syntaxin V_ATPase_I PF01496.14 gi|330834190|ref|YP_004408918.1| - 0.37 8.6 4.7 0.39 8.5 3.3 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Nnf1 PF03980.9 gi|330834190|ref|YP_004408918.1| - 0.44 10.5 6.7 0.12 12.4 1.2 2.1 1 1 1 2 2 2 0 Nnf1 TMF_TATA_bd PF12325.3 gi|330834190|ref|YP_004408918.1| - 0.48 10.1 9.2 0.15 11.7 3.2 2.0 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF4559 PF15112.1 gi|330834190|ref|YP_004408918.1| - 0.65 9.1 5.1 0.74 8.9 3.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Ax_dynein_light PF10211.4 gi|330834190|ref|YP_004408918.1| - 0.66 9.7 7.9 0.16 11.8 2.8 1.8 1 1 0 2 2 2 0 Axonemal dynein light chain M PF02370.11 gi|330834190|ref|YP_004408918.1| - 0.88 10.1 9.1 1.8 9.2 2.8 2.8 2 0 0 2 2 2 0 M protein repeat Tropomyosin_1 PF12718.2 gi|330834190|ref|YP_004408918.1| - 1.2 9.0 11.9 3.6 7.4 8.1 1.9 1 1 0 1 1 1 0 Tropomyosin like Prefoldin_2 PF01920.15 gi|330834190|ref|YP_004408918.1| - 1.2 8.9 9.9 0.15 11.8 1.3 2.6 1 1 2 3 3 3 0 Prefoldin subunit Kinetocho_Slk19 PF12709.2 gi|330834190|ref|YP_004408918.1| - 1.3 9.1 8.5 16 5.6 4.8 2.8 1 1 1 2 2 2 0 Central kinetochore-associated Phage_GP20 PF06810.6 gi|330834190|ref|YP_004408918.1| - 1.4 8.3 9.1 3.6 7.0 6.3 1.7 1 1 0 1 1 1 0 Phage minor structural protein GP20 Mis14 PF08641.7 gi|330834190|ref|YP_004408918.1| - 3 7.8 7.1 0.84 9.6 1.6 1.9 1 1 1 2 2 2 0 Kinetochore protein Mis14 like Spc24 PF08286.6 gi|330834190|ref|YP_004408918.1| - 4.6 6.9 8.2 1.7 8.3 2.5 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 TMF_DNA_bd PF12329.3 gi|330834190|ref|YP_004408918.1| - 8.2 6.3 12.8 17 5.3 5.1 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding MarC PF01914.12 gi|330834191|ref|YP_004408919.1| - 2.3e-33 115.0 15.8 2.6e-33 114.8 11.0 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein LysE PF01810.13 gi|330834191|ref|YP_004408919.1| - 0.26 10.5 9.7 6.7 5.9 6.7 2.3 1 1 0 1 1 1 0 LysE type translocator AsnC_trans_reg PF01037.16 gi|330834192|ref|YP_004408920.1| - 2.5e-17 62.3 0.8 3.8e-17 61.7 0.5 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|330834192|ref|YP_004408920.1| - 1.2e-12 46.9 1.0 3.5e-12 45.5 0.5 1.9 3 0 0 3 3 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330834192|ref|YP_004408920.1| - 9.1e-10 37.9 2.1 1.5e-09 37.2 1.5 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|330834192|ref|YP_004408920.1| - 1.4e-06 27.8 0.2 2.7e-06 26.9 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|330834192|ref|YP_004408920.1| - 0.00013 21.5 0.2 0.00025 20.5 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|330834192|ref|YP_004408920.1| - 0.00015 21.2 0.1 0.00029 20.3 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|330834192|ref|YP_004408920.1| - 0.0013 18.6 0.3 0.0052 16.6 0.0 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|330834192|ref|YP_004408920.1| - 0.0017 18.6 0.2 0.0043 17.3 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|330834192|ref|YP_004408920.1| - 0.003 17.1 0.0 0.0056 16.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain TrmB PF01978.14 gi|330834192|ref|YP_004408920.1| - 0.0041 16.8 0.2 0.016 14.9 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|330834192|ref|YP_004408920.1| - 0.0054 16.8 0.2 0.038 14.1 0.0 2.3 3 0 0 3 3 3 1 Transcriptional regulator MarR PF01047.17 gi|330834192|ref|YP_004408920.1| - 0.0065 16.1 0.2 0.029 14.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|330834192|ref|YP_004408920.1| - 0.0074 16.0 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|330834192|ref|YP_004408920.1| - 0.0085 15.6 0.3 0.026 14.0 0.1 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|330834192|ref|YP_004408920.1| - 0.021 14.8 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|330834192|ref|YP_004408920.1| - 0.022 14.2 0.1 0.042 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_psq PF05225.11 gi|330834192|ref|YP_004408920.1| - 0.023 14.2 0.0 0.26 10.8 0.0 2.2 2 0 0 2 2 2 0 helix-turn-helix, Psq domain FeoC PF09012.5 gi|330834192|ref|YP_004408920.1| - 0.039 13.6 0.0 0.083 12.6 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_IclR PF09339.5 gi|330834192|ref|YP_004408920.1| - 0.043 13.4 0.2 0.069 12.7 0.2 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain PCI PF01399.22 gi|330834192|ref|YP_004408920.1| - 0.044 14.0 0.1 0.15 12.3 0.0 1.8 2 0 0 2 2 2 0 PCI domain Clp_N PF02861.15 gi|330834192|ref|YP_004408920.1| - 0.046 13.6 0.0 0.11 12.4 0.0 1.6 2 0 0 2 2 1 0 Clp amino terminal domain HTH_5 PF01022.15 gi|330834192|ref|YP_004408920.1| - 0.047 13.3 0.3 0.097 12.3 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|330834192|ref|YP_004408920.1| - 0.049 13.1 0.1 0.12 11.9 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain ALAD PF00490.16 gi|330834192|ref|YP_004408920.1| - 0.059 12.2 0.2 0.099 11.5 0.1 1.3 1 0 0 1 1 1 0 Delta-aminolevulinic acid dehydratase HTH_Tnp_ISL3 PF13542.1 gi|330834192|ref|YP_004408920.1| - 0.061 12.5 0.1 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TetR_C_9 PF14514.1 gi|330834192|ref|YP_004408920.1| - 0.065 13.0 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator, TetR, C-terminal DUF4250 PF14056.1 gi|330834192|ref|YP_004408920.1| - 0.083 12.6 0.1 0.21 11.3 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) EAP30 PF04157.11 gi|330834192|ref|YP_004408920.1| - 0.088 11.9 0.1 0.2 10.7 0.0 1.6 2 0 0 2 2 2 0 EAP30/Vps36 family Dabb PF07876.7 gi|330834192|ref|YP_004408920.1| - 0.09 13.2 0.0 0.16 12.3 0.0 1.5 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain Mga PF05043.8 gi|330834192|ref|YP_004408920.1| - 0.13 12.6 0.1 0.34 11.2 0.0 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_30 PF13556.1 gi|330834192|ref|YP_004408920.1| - 0.13 11.8 0.2 0.33 10.5 0.1 1.8 1 1 1 2 2 2 0 PucR C-terminal helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|330834192|ref|YP_004408920.1| - 0.14 12.1 0.6 0.31 11.0 0.1 1.7 2 0 0 2 2 1 0 Sulfolobus plasmid regulatory protein RNA_POL_M_15KD PF02150.11 gi|330834193|ref|YP_004408921.1| - 4.1e-07 29.5 0.3 7.2e-07 28.7 0.2 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.8 gi|330834193|ref|YP_004408921.1| - 0.022 14.2 0.2 0.039 13.4 0.2 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.1 gi|330834193|ref|YP_004408921.1| - 0.024 13.7 0.1 0.043 13.0 0.1 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF2387 PF09526.5 gi|330834193|ref|YP_004408921.1| - 0.025 14.4 0.6 0.036 13.9 0.4 1.5 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|330834193|ref|YP_004408921.1| - 0.048 13.4 0.1 0.072 12.9 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|330834193|ref|YP_004408921.1| - 0.05 13.1 0.9 0.32 10.5 0.1 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1936 PF09151.5 gi|330834193|ref|YP_004408921.1| - 0.093 12.2 3.2 0.15 11.6 2.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) OrfB_Zn_ribbon PF07282.6 gi|330834193|ref|YP_004408921.1| - 0.15 11.7 0.5 0.57 9.8 0.1 1.9 1 1 1 2 2 2 0 Putative transposase DNA-binding domain FYDLN_acid PF09538.5 gi|330834193|ref|YP_004408921.1| - 0.2 12.2 4.9 0.26 11.8 3.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Radical_SAM PF04055.16 gi|330834195|ref|YP_004408923.1| - 1e-16 61.5 0.0 2.7e-16 60.2 0.0 1.8 1 0 0 1 1 1 1 Radical SAM superfamily tRNA-synt_2b PF00587.20 gi|330834196|ref|YP_004408924.1| - 1.3e-35 122.4 0.0 2e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|330834196|ref|YP_004408924.1| - 9.8e-17 60.9 7.7 1.5e-16 60.3 4.8 1.8 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain APG6 PF04111.7 gi|330834196|ref|YP_004408924.1| - 0.00031 19.9 1.0 0.017 14.1 0.2 2.3 2 0 0 2 2 2 1 Autophagy protein Apg6 Dor1 PF04124.7 gi|330834196|ref|YP_004408924.1| - 0.0034 15.8 1.7 0.19 10.1 0.4 2.2 2 0 0 2 2 2 2 Dor1-like family DUF2122 PF09895.4 gi|330834196|ref|YP_004408924.1| - 0.082 13.1 0.5 4.7 7.4 0.0 2.4 2 0 0 2 2 2 0 RecB-family nuclease (DUF2122) DUF342 PF03961.8 gi|330834196|ref|YP_004408924.1| - 0.13 10.6 0.3 0.22 9.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF904 PF06005.7 gi|330834196|ref|YP_004408924.1| - 0.17 12.1 0.1 0.17 12.1 0.1 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF904) Spectrin PF00435.16 gi|330834196|ref|YP_004408924.1| - 0.33 11.2 5.9 1.2 9.4 2.3 2.7 2 1 1 3 3 3 0 Spectrin repeat ALIX_LYPXL_bnd PF13949.1 gi|330834196|ref|YP_004408924.1| - 0.54 9.1 8.4 0.42 9.5 4.6 1.6 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV CCDC-167 PF15188.1 gi|330834196|ref|YP_004408924.1| - 0.63 10.0 5.1 1.4 8.9 3.5 1.5 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF59 PF01883.14 gi|330834197|ref|YP_004408925.1| - 1.2e-15 57.2 0.1 1.6e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF59 YqhG PF11079.3 gi|330834197|ref|YP_004408925.1| - 0.052 12.3 0.0 0.21 10.3 0.0 1.8 2 0 0 2 2 2 0 Bacterial protein YqhG of unknown function PRA-CH PF01502.13 gi|330834198|ref|YP_004408926.1| - 8.4e-31 105.4 0.0 1.1e-30 105.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GATase PF00117.23 gi|330834199|ref|YP_004408927.1| - 3.1e-26 92.0 0.0 3.5e-26 91.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|330834199|ref|YP_004408927.1| - 2.9e-07 30.2 0.0 4.4e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.1 gi|330834199|ref|YP_004408927.1| - 0.029 13.2 0.1 0.11 11.4 0.0 2.0 4 0 0 4 4 4 0 CobB/CobQ-like glutamine amidotransferase domain BPL_N PF09825.4 gi|330834199|ref|YP_004408927.1| - 0.077 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal PRA-PH PF01503.12 gi|330834200|ref|YP_004408928.1| - 6.1e-13 48.8 0.0 6.6e-13 48.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|330834200|ref|YP_004408928.1| - 0.0049 16.7 0.1 0.0066 16.3 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Histidinol_dh PF00815.15 gi|330834201|ref|YP_004408929.1| - 5.6e-110 367.7 0.0 5.1e-109 364.6 0.0 1.9 1 1 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.16 gi|330834202|ref|YP_004408930.1| - 2.3e-82 275.6 3.0 2.6e-82 275.5 2.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|330834202|ref|YP_004408930.1| - 3.9e-06 25.9 0.0 0.0039 16.0 0.0 2.2 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.12 gi|330834202|ref|YP_004408930.1| - 0.00013 21.1 0.1 0.19 10.8 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|330834202|ref|YP_004408930.1| - 0.0013 18.0 0.2 0.0042 16.3 0.0 1.9 2 1 1 3 3 3 1 PcrB family ThiG PF05690.9 gi|330834202|ref|YP_004408930.1| - 0.0049 15.9 0.4 1.4 7.9 0.0 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|330834202|ref|YP_004408930.1| - 0.0071 15.5 0.8 1.6 7.8 0.2 2.2 1 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|330834202|ref|YP_004408930.1| - 0.074 11.8 0.1 0.13 11.0 0.0 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase IGPD PF00475.13 gi|330834203|ref|YP_004408931.1| - 6.7e-56 188.1 0.4 4.8e-55 185.3 0.2 1.9 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.16 gi|330834204|ref|YP_004408932.1| - 6.5e-49 166.2 0.6 7.3e-49 166.0 0.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein UBA PF00627.26 gi|330834204|ref|YP_004408932.1| - 0.032 14.0 0.0 4.6 7.2 0.0 3.7 4 0 0 4 4 4 0 UBA/TS-N domain NanE PF04131.9 gi|330834204|ref|YP_004408932.1| - 0.098 11.6 0.1 3.9 6.3 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase PcrB PF01884.12 gi|330834204|ref|YP_004408932.1| - 0.13 11.5 1.5 0.52 9.5 0.0 2.1 2 0 0 2 2 2 0 PcrB family HisG PF01634.13 gi|330834205|ref|YP_004408933.1| - 1.1e-52 177.8 0.1 1.5e-52 177.5 0.1 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|330834205|ref|YP_004408933.1| - 1.4e-20 73.0 0.8 3.4e-20 71.7 0.5 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NIR_SIR_ferr PF03460.12 gi|330834205|ref|YP_004408933.1| - 0.09 12.4 1.1 1.3 8.7 0.0 3.2 4 1 0 4 4 4 0 Nitrite/Sulfite reductase ferredoxin-like half domain Aminotran_1_2 PF00155.16 gi|330834206|ref|YP_004408934.1| - 9.5e-38 130.0 0.0 1.1e-37 129.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II TK PF00265.13 gi|330834206|ref|YP_004408934.1| - 0.16 11.4 0.0 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 Thymidine kinase Mrr_N PF14338.1 gi|330834207|ref|YP_004408935.1| - 0.089 12.8 0.1 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain tRNA-synt_1 PF00133.17 gi|330834208|ref|YP_004408936.1| - 6.4e-56 189.5 0.0 4.4e-54 183.5 0.0 2.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|330834208|ref|YP_004408936.1| - 1.6e-25 89.5 1.8 8e-13 47.8 0.0 3.4 5 0 0 5 5 5 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|330834208|ref|YP_004408936.1| - 2.3e-25 89.1 3.0 6.2e-25 87.7 1.5 2.2 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|330834208|ref|YP_004408936.1| - 1.4e-12 47.3 0.0 1.5e-05 24.2 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|330834208|ref|YP_004408936.1| - 7.8e-10 38.3 0.0 1.7e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|330834208|ref|YP_004408936.1| - 0.0037 16.1 0.0 0.0085 14.9 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (R) Apolipoprotein PF01442.13 gi|330834208|ref|YP_004408936.1| - 0.085 12.3 0.0 0.21 11.0 0.0 1.7 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Cob_adeno_trans PF01923.13 gi|330834209|ref|YP_004408937.1| - 2.8e-49 167.0 0.0 3.1e-49 166.8 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF1940 PF09155.5 gi|330834209|ref|YP_004408937.1| - 0.06 13.1 0.9 0.29 10.9 0.6 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1940) ATP_bind_3 PF01171.15 gi|330834210|ref|YP_004408938.1| - 1e-11 44.6 0.0 1.7e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|330834210|ref|YP_004408938.1| - 0.0025 16.7 0.1 0.0033 16.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|330834210|ref|YP_004408938.1| - 0.017 13.7 0.0 0.022 13.3 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.14 gi|330834210|ref|YP_004408938.1| - 0.051 13.3 0.0 0.096 12.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family NeuB PF03102.9 gi|330834210|ref|YP_004408938.1| - 0.053 12.6 0.0 0.084 12.0 0.0 1.3 1 0 0 1 1 1 0 NeuB family Asn_synthase PF00733.16 gi|330834210|ref|YP_004408938.1| - 0.096 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DZR PF12773.2 gi|330834210|ref|YP_004408938.1| - 0.84 9.5 12.2 0.19 11.5 1.2 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|330834210|ref|YP_004408938.1| - 3.8 7.3 6.6 13 5.6 1.6 2.8 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-B_box PF00643.19 gi|330834210|ref|YP_004408938.1| - 9.1 6.2 6.8 18 5.2 0.2 2.6 2 0 0 2 2 2 0 B-box zinc finger DUF211 PF02680.9 gi|330834211|ref|YP_004408939.1| - 3e-34 116.6 2.0 3.2e-34 116.6 1.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 AdoMet_dc PF02675.10 gi|330834212|ref|YP_004408940.1| - 5.6e-33 113.0 0.0 6.4e-33 112.8 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UbiA PF01040.13 gi|330834215|ref|YP_004408943.1| - 2.4e-33 115.4 19.9 2.4e-33 115.4 13.8 1.7 1 1 1 2 2 2 1 UbiA prenyltransferase family DUF2079 PF09852.4 gi|330834215|ref|YP_004408943.1| - 0.0055 15.4 1.3 0.0055 15.4 0.9 2.1 2 0 0 2 2 2 1 Predicted membrane protein (DUF2079) CARDB PF07705.6 gi|330834216|ref|YP_004408944.1| - 0.04 13.9 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 CARDB Peptidase_C23 PF05379.6 gi|330834216|ref|YP_004408944.1| - 0.073 13.0 0.1 0.27 11.2 0.0 2.0 2 0 0 2 2 2 0 Carlavirus endopeptidase MMR_HSR1 PF01926.18 gi|330834217|ref|YP_004408945.1| - 3.4e-13 49.5 0.4 5.5e-11 42.4 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF258 PF03193.11 gi|330834217|ref|YP_004408945.1| - 4.2e-07 29.2 0.0 5.8e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|330834217|ref|YP_004408945.1| - 1.4e-06 28.1 4.8 0.00011 22.0 0.2 2.8 2 1 1 3 3 3 2 Dynamin family FeoB_N PF02421.13 gi|330834217|ref|YP_004408945.1| - 1.4e-05 24.4 0.3 0.036 13.3 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B AIG1 PF04548.11 gi|330834217|ref|YP_004408945.1| - 0.0089 15.1 0.0 0.039 13.0 0.0 1.9 2 0 0 2 2 2 1 AIG1 family ArgK PF03308.11 gi|330834217|ref|YP_004408945.1| - 0.018 13.8 0.3 0.051 12.3 0.1 1.7 1 1 1 2 2 2 0 ArgK protein AAA_17 PF13207.1 gi|330834217|ref|YP_004408945.1| - 0.027 15.2 0.0 0.069 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|330834217|ref|YP_004408945.1| - 0.042 14.3 0.4 0.11 12.9 0.1 1.7 2 0 0 2 2 2 0 Miro-like protein GTP_EFTU PF00009.22 gi|330834217|ref|YP_004408945.1| - 0.066 12.6 0.5 3.2 7.1 0.0 2.6 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain PduV-EutP PF10662.4 gi|330834217|ref|YP_004408945.1| - 0.085 12.3 0.1 12 5.3 0.1 2.4 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Acid_PPase PF12689.2 gi|330834218|ref|YP_004408946.1| - 2.3e-13 50.1 0.1 3.5e-13 49.5 0.0 1.3 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.1 gi|330834218|ref|YP_004408946.1| - 1.3e-09 38.5 0.1 4.1e-09 36.9 0.0 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330834218|ref|YP_004408946.1| - 8.5e-07 29.5 0.2 1.5e-05 25.5 0.0 2.0 1 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|330834218|ref|YP_004408946.1| - 0.0004 20.0 0.1 0.00043 19.9 0.1 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Ribosomal_L30 PF00327.15 gi|330834218|ref|YP_004408946.1| - 0.0024 17.4 0.0 0.033 13.7 0.0 2.2 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e HAD PF12710.2 gi|330834218|ref|YP_004408946.1| - 0.0049 17.0 0.1 0.011 15.8 0.0 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330834218|ref|YP_004408946.1| - 0.042 13.4 0.0 0.069 12.7 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|330834218|ref|YP_004408946.1| - 0.06 13.2 0.0 0.22 11.4 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_trans_4_2 PF13477.1 gi|330834218|ref|YP_004408946.1| - 0.077 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like TPP_enzyme_N PF02776.13 gi|330834219|ref|YP_004408947.1| - 1.9e-56 190.2 0.1 4.4e-55 185.8 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|330834219|ref|YP_004408947.1| - 4.1e-44 149.8 0.0 1e-43 148.5 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|330834219|ref|YP_004408947.1| - 6.3e-36 123.1 0.0 1.9e-35 121.6 0.0 1.8 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|330834219|ref|YP_004408947.1| - 0.0031 17.0 0.1 0.0092 15.5 0.1 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACT_5 PF13710.1 gi|330834220|ref|YP_004408948.1| - 1.9e-11 43.5 0.1 3.4e-11 42.7 0.1 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|330834220|ref|YP_004408948.1| - 0.079 12.4 0.0 0.12 11.8 0.0 1.4 1 1 0 1 1 1 0 ACT domain IlvN PF07991.7 gi|330834221|ref|YP_004408949.1| - 5.5e-73 243.7 0.0 8.9e-73 243.0 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|330834221|ref|YP_004408949.1| - 1.1e-42 145.4 1.8 1.4e-42 145.0 1.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|330834221|ref|YP_004408949.1| - 1.3e-09 38.3 0.0 7.3e-09 35.9 0.0 2.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|330834221|ref|YP_004408949.1| - 6.1e-07 28.7 0.0 1.7e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|330834221|ref|YP_004408949.1| - 9.4e-07 28.8 0.0 2.4e-05 24.2 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.10 gi|330834221|ref|YP_004408949.1| - 2.9e-06 27.2 0.0 2.8e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|330834221|ref|YP_004408949.1| - 0.00012 21.5 0.0 0.00031 20.1 0.0 1.7 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|330834221|ref|YP_004408949.1| - 0.00021 21.3 0.0 0.00039 20.4 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|330834221|ref|YP_004408949.1| - 0.00025 20.7 0.4 0.037 13.7 0.2 2.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.12 gi|330834221|ref|YP_004408949.1| - 0.032 13.1 0.0 0.048 12.5 0.0 1.2 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_binding_7 PF13241.1 gi|330834221|ref|YP_004408949.1| - 0.072 13.3 0.0 0.21 11.8 0.0 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Hjc PF01870.13 gi|330834222|ref|YP_004408950.1| - 2.8e-26 90.9 0.0 3.8e-26 90.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) VRR_NUC PF08774.6 gi|330834222|ref|YP_004408950.1| - 0.022 14.7 0.0 0.056 13.4 0.0 1.7 2 0 0 2 2 2 0 VRR-NUC domain DUF3883 PF13020.1 gi|330834222|ref|YP_004408950.1| - 0.03 14.0 0.0 0.072 12.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3883) T2SE PF00437.15 gi|330834223|ref|YP_004408951.1| - 4.5e-12 45.4 0.0 7.6e-12 44.6 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|330834223|ref|YP_004408951.1| - 5.6e-05 23.9 0.0 0.00021 22.1 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330834223|ref|YP_004408951.1| - 0.00022 21.2 0.0 0.0027 17.7 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain AAA_18 PF13238.1 gi|330834223|ref|YP_004408951.1| - 0.00046 20.4 0.0 0.0015 18.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|330834223|ref|YP_004408951.1| - 0.0016 17.9 0.0 0.0037 16.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.10 gi|330834223|ref|YP_004408951.1| - 0.0023 16.8 0.0 0.0057 15.5 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain RuvB_N PF05496.7 gi|330834223|ref|YP_004408951.1| - 0.0033 16.4 0.3 0.016 14.2 0.0 2.2 3 0 0 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|330834223|ref|YP_004408951.1| - 0.0036 17.4 0.1 0.043 13.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|330834223|ref|YP_004408951.1| - 0.0039 16.6 0.1 0.0067 15.8 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA PF00004.24 gi|330834223|ref|YP_004408951.1| - 0.004 17.3 0.0 0.011 15.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|330834223|ref|YP_004408951.1| - 0.0051 16.5 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|330834223|ref|YP_004408951.1| - 0.0071 15.4 0.0 0.025 13.6 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin ArgK PF03308.11 gi|330834223|ref|YP_004408951.1| - 0.0096 14.7 0.0 0.02 13.6 0.0 1.4 1 0 0 1 1 1 1 ArgK protein RNA_helicase PF00910.17 gi|330834223|ref|YP_004408951.1| - 0.01 16.0 0.0 0.078 13.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_25 PF13481.1 gi|330834223|ref|YP_004408951.1| - 0.011 15.2 0.0 0.025 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|330834223|ref|YP_004408951.1| - 0.014 15.2 0.0 0.074 12.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|330834223|ref|YP_004408951.1| - 0.015 14.4 0.0 0.039 13.1 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_14 PF13173.1 gi|330834223|ref|YP_004408951.1| - 0.016 15.1 0.1 0.06 13.2 0.0 2.0 3 0 0 3 3 1 0 AAA domain NTPase_1 PF03266.10 gi|330834223|ref|YP_004408951.1| - 0.016 14.9 0.1 0.048 13.3 0.0 1.8 1 0 0 1 1 1 0 NTPase NACHT PF05729.7 gi|330834223|ref|YP_004408951.1| - 0.016 14.8 0.1 0.037 13.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|330834223|ref|YP_004408951.1| - 0.017 14.5 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_28 PF13521.1 gi|330834223|ref|YP_004408951.1| - 0.018 15.0 0.0 0.04 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|330834223|ref|YP_004408951.1| - 0.021 15.1 0.0 0.051 13.8 0.0 1.8 2 0 0 2 2 1 0 ABC transporter ATP_bind_1 PF03029.12 gi|330834223|ref|YP_004408951.1| - 0.026 14.0 0.4 0.07 12.6 0.1 1.8 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Sigma54_activ_2 PF14532.1 gi|330834223|ref|YP_004408951.1| - 0.027 14.5 0.0 0.071 13.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Bac_DnaA PF00308.13 gi|330834223|ref|YP_004408951.1| - 0.028 14.0 0.6 5.8 6.4 0.0 3.2 3 0 0 3 3 3 0 Bacterial dnaA protein AAA_5 PF07728.9 gi|330834223|ref|YP_004408951.1| - 0.038 13.6 0.0 0.14 11.8 0.0 2.0 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Sigma54_CBD PF04963.8 gi|330834223|ref|YP_004408951.1| - 0.038 13.4 0.1 0.081 12.3 0.1 1.5 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain RNA_pol_Rpb5_C PF01191.14 gi|330834223|ref|YP_004408951.1| - 0.04 13.5 0.7 0.23 11.0 0.1 2.3 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain DUF815 PF05673.8 gi|330834223|ref|YP_004408951.1| - 0.067 12.1 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_30 PF13604.1 gi|330834223|ref|YP_004408951.1| - 0.076 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|330834223|ref|YP_004408951.1| - 0.095 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_3 PF07726.6 gi|330834223|ref|YP_004408951.1| - 0.098 12.2 0.0 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|330834223|ref|YP_004408951.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain TrwB_AAD_bind PF10412.4 gi|330834223|ref|YP_004408951.1| - 0.16 10.5 0.0 0.31 9.5 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SNO PF01174.14 gi|330834224|ref|YP_004408952.1| - 8.7e-47 159.1 0.1 9.7e-47 159.0 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|330834224|ref|YP_004408952.1| - 2.1e-11 43.6 0.1 3.3e-11 43.0 0.1 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|330834224|ref|YP_004408952.1| - 4.9e-09 36.1 0.0 6.2e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.23 gi|330834224|ref|YP_004408952.1| - 1.6e-07 30.9 0.1 2.9e-07 30.1 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.19 gi|330834224|ref|YP_004408952.1| - 0.027 13.9 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family DUF4066 PF13278.1 gi|330834224|ref|YP_004408952.1| - 0.036 13.3 0.0 0.07 12.4 0.0 1.5 2 0 0 2 2 2 0 Putative amidotransferase SOR_SNZ PF01680.12 gi|330834225|ref|YP_004408953.1| - 1.3e-97 325.4 2.4 1.8e-97 324.9 1.7 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|330834225|ref|YP_004408953.1| - 1.1e-06 27.8 1.1 1e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|330834225|ref|YP_004408953.1| - 0.0013 17.8 0.0 0.15 11.1 0.0 2.4 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|330834225|ref|YP_004408953.1| - 0.0018 17.5 0.7 0.064 12.5 0.1 2.8 2 1 1 3 3 3 2 Histidine biosynthesis protein NMO PF03060.10 gi|330834225|ref|YP_004408953.1| - 0.0028 16.8 1.2 0.018 14.2 0.0 2.3 2 1 1 3 3 3 1 Nitronate monooxygenase OMPdecase PF00215.19 gi|330834225|ref|YP_004408953.1| - 0.0089 15.4 0.1 2.5 7.4 0.0 2.5 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.9 gi|330834225|ref|YP_004408953.1| - 0.015 14.2 0.3 0.51 9.2 0.0 2.6 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase Ribosomal_S26e PF01283.14 gi|330834226|ref|YP_004408954.1| - 1.9e-29 102.1 2.9 2.2e-29 102.0 2.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DZR PF12773.2 gi|330834226|ref|YP_004408954.1| - 0.11 12.2 0.4 0.11 12.2 0.3 2.1 1 1 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|330834226|ref|YP_004408954.1| - 0.12 12.7 0.2 0.12 12.7 0.1 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-dskA_traR PF01258.12 gi|330834226|ref|YP_004408954.1| - 0.32 10.7 5.2 0.54 10.0 0.2 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger tRNA-synt_2b PF00587.20 gi|330834227|ref|YP_004408955.1| - 1.8e-27 95.9 0.2 2.9e-27 95.3 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330834227|ref|YP_004408955.1| - 3.9e-18 65.1 0.1 9e-18 64.0 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|330834227|ref|YP_004408955.1| - 7.9e-17 60.9 0.0 2.3e-16 59.4 0.0 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2 PF00152.15 gi|330834227|ref|YP_004408955.1| - 0.016 13.9 0.0 0.024 13.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class II (D, K and N) ATP-synt_C PF00137.16 gi|330834228|ref|YP_004408956.1| - 2.7e-15 56.0 21.1 3.9e-15 55.5 14.6 1.3 1 0 0 1 1 1 1 ATP synthase subunit C Nitrate_red_gam PF02665.9 gi|330834228|ref|YP_004408956.1| - 0.3 10.4 4.1 0.28 10.5 2.1 1.4 1 1 0 1 1 1 0 Nitrate reductase gamma subunit DsbB PF02600.11 gi|330834228|ref|YP_004408956.1| - 9.2 6.0 7.7 25 4.6 2.6 2.2 1 1 1 2 2 2 0 Disulfide bond formation protein DsbB ATP-synt_E_2 PF08112.6 gi|330834229|ref|YP_004408957.1| - 1.1e-05 25.3 4.4 1.1e-05 25.3 3.0 1.0 1 0 0 1 1 1 1 ATP synthase epsilon subunit DUF4558 PF15104.1 gi|330834229|ref|YP_004408957.1| - 0.02 14.7 0.7 0.022 14.6 0.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4558) ATP-synt_D PF01813.12 gi|330834230|ref|YP_004408958.1| - 2.7e-49 167.4 5.7 3.1e-49 167.2 3.9 1.0 1 0 0 1 1 1 1 ATP synthase subunit D GPAT_N PF14829.1 gi|330834230|ref|YP_004408958.1| - 0.0021 17.6 2.2 0.0068 16.0 0.4 2.4 2 1 1 3 3 3 1 Glycerol-3-phosphate acyltransferase N-terminal ATP-synt_ab PF00006.20 gi|330834231|ref|YP_004408959.1| - 3e-60 203.3 0.0 4.2e-60 202.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|330834231|ref|YP_004408959.1| - 6.1e-13 49.2 0.0 1.2e-12 48.2 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|330834231|ref|YP_004408959.1| - 1.5e-10 41.0 2.4 4.1e-10 39.7 1.7 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|330834231|ref|YP_004408959.1| - 0.0021 17.8 0.7 0.014 15.2 1.0 2.0 2 0 0 2 2 2 1 HAS barrel domain ATP-synt_ab PF00006.20 gi|330834232|ref|YP_004408960.1| - 1.7e-87 292.4 0.0 2.4e-87 291.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|330834232|ref|YP_004408960.1| - 2.5e-17 63.3 2.4 4.7e-17 62.4 1.7 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|330834232|ref|YP_004408960.1| - 2.3e-11 43.7 1.2 2.3e-11 43.7 0.8 2.1 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Biotin_lipoyl PF00364.17 gi|330834232|ref|YP_004408960.1| - 0.011 15.3 0.3 0.033 13.8 0.2 1.8 1 0 0 1 1 1 0 Biotin-requiring enzyme Peptidase_M23 PF01551.17 gi|330834232|ref|YP_004408960.1| - 0.032 14.2 0.1 0.55 10.3 0.0 2.4 2 0 0 2 2 2 0 Peptidase family M23 AAA_22 PF13401.1 gi|330834232|ref|YP_004408960.1| - 0.067 13.3 0.4 0.2 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain vATP-synt_E PF01991.13 gi|330834233|ref|YP_004408961.1| - 8.9e-08 31.6 9.7 1.5e-07 30.8 6.7 1.4 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit YtzH PF14165.1 gi|330834233|ref|YP_004408961.1| - 0.042 14.0 0.2 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 YtzH-like protein Phage_RpbA PF10789.4 gi|330834233|ref|YP_004408961.1| - 0.066 13.0 1.5 0.096 12.5 0.3 1.7 2 0 0 2 2 2 0 Phage RNA polymerase binding, RpbA Mt_ATP-synt_B PF05405.9 gi|330834233|ref|YP_004408961.1| - 0.11 11.8 2.3 0.24 10.8 1.6 1.5 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) OSCP PF00213.13 gi|330834233|ref|YP_004408961.1| - 0.12 12.2 0.2 0.12 12.2 0.1 2.2 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit DUF3782 PF12644.2 gi|330834233|ref|YP_004408961.1| - 0.41 10.4 8.6 0.45 10.3 4.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) ATP-synt_F PF01990.12 gi|330834234|ref|YP_004408962.1| - 2.9e-14 53.2 0.3 3.2e-14 53.0 0.2 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit SE PF08491.5 gi|330834234|ref|YP_004408962.1| - 0.075 11.8 0.0 0.084 11.6 0.0 1.0 1 0 0 1 1 1 0 Squalene epoxidase V_ATPase_I PF01496.14 gi|330834235|ref|YP_004408963.1| - 1.4e-62 211.6 7.4 2.8e-62 210.6 5.1 1.4 1 1 0 1 1 1 1 V-type ATPase 116kDa subunit family Recep_L_domain PF01030.19 gi|330834235|ref|YP_004408963.1| - 0.043 13.7 2.3 0.071 13.0 0.3 2.3 2 0 0 2 2 2 0 Receptor L domain tRNA-synt_1g PF09334.6 gi|330834236|ref|YP_004408964.1| - 2.6e-144 480.6 0.0 3.4e-144 480.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|330834236|ref|YP_004408964.1| - 5.9e-10 37.7 0.2 0.00026 19.1 0.0 3.1 2 1 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330834236|ref|YP_004408964.1| - 1.1e-06 28.4 0.0 2.2e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA zf-ribbon_3 PF13248.1 gi|330834236|ref|YP_004408964.1| - 0.043 13.0 2.9 2.4 7.4 2.0 2.5 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|330834236|ref|YP_004408964.1| - 0.076 12.8 2.6 0.15 11.8 1.8 1.5 1 0 0 1 1 1 0 Double zinc ribbon MtrG PF04210.8 gi|330834236|ref|YP_004408964.1| - 0.11 12.2 0.1 0.34 10.6 0.1 1.9 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G DNA_primase_lrg PF04104.9 gi|330834237|ref|YP_004408965.1| - 4e-10 39.4 0.1 0.0004 19.7 0.0 2.2 1 1 1 2 2 2 2 Eukaryotic and archaeal DNA primase, large subunit CDP-OH_P_transf PF01066.16 gi|330834238|ref|YP_004408966.1| - 9.6e-15 54.7 7.1 2.9e-14 53.1 5.0 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase Methyltransf_18 PF12847.2 gi|330834240|ref|YP_004408968.1| - 1.3e-12 48.2 0.0 1.8e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330834240|ref|YP_004408968.1| - 9.1e-12 44.6 0.1 1.2e-11 44.3 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|330834240|ref|YP_004408968.1| - 1.8e-11 43.8 0.2 2.8e-11 43.2 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|330834240|ref|YP_004408968.1| - 6.2e-08 32.2 0.4 2.3e-07 30.3 0.3 1.8 1 1 0 1 1 1 1 Histone methylation protein DOT1 CMAS PF02353.15 gi|330834240|ref|YP_004408968.1| - 1.8e-07 30.5 0.0 2.1e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_25 PF13649.1 gi|330834240|ref|YP_004408968.1| - 2.3e-07 31.1 0.0 3.1e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330834240|ref|YP_004408968.1| - 6e-07 29.5 0.0 6.9e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330834240|ref|YP_004408968.1| - 1.4e-06 28.7 0.0 2.1e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330834240|ref|YP_004408968.1| - 3.2e-06 26.6 0.2 4.3e-06 26.2 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|330834240|ref|YP_004408968.1| - 1e-05 25.8 0.1 1.6e-05 25.2 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|330834240|ref|YP_004408968.1| - 7.4e-05 22.3 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|330834240|ref|YP_004408968.1| - 0.00019 20.5 0.2 0.00028 19.9 0.1 1.4 1 1 0 1 1 1 1 Putative methyltransferase DUF633 PF04816.7 gi|330834240|ref|YP_004408968.1| - 0.0002 20.7 0.2 0.00094 18.5 0.0 1.8 1 1 1 2 2 2 1 Family of unknown function (DUF633) Ubie_methyltran PF01209.13 gi|330834240|ref|YP_004408968.1| - 0.00053 19.1 0.1 0.00068 18.8 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family N6_Mtase PF02384.11 gi|330834240|ref|YP_004408968.1| - 0.0018 17.4 0.0 0.0024 16.9 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase MetW PF07021.7 gi|330834240|ref|YP_004408968.1| - 0.0029 16.9 0.1 0.0035 16.7 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.1 gi|330834240|ref|YP_004408968.1| - 0.0067 16.1 0.1 0.011 15.5 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|330834240|ref|YP_004408968.1| - 0.049 13.2 0.1 0.058 13.0 0.0 1.3 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_15 PF09445.5 gi|330834240|ref|YP_004408968.1| - 0.051 13.1 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ADH_zinc_N PF00107.21 gi|330834240|ref|YP_004408968.1| - 0.091 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase FtsJ PF01728.14 gi|330834240|ref|YP_004408968.1| - 0.12 12.3 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase DUF2286 PF10051.4 gi|330834241|ref|YP_004408969.1| - 1e-52 177.5 1.5 1.2e-52 177.3 1.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DNA_pol_B PF00136.16 gi|330834242|ref|YP_004408970.1| - 1.1e-92 311.2 2.0 1.5e-92 310.8 1.4 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|330834242|ref|YP_004408970.1| - 6.4e-27 94.2 0.1 1.5e-26 93.0 0.1 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|330834242|ref|YP_004408970.1| - 2.5e-06 27.2 0.0 9.6e-06 25.2 0.0 2.0 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.1 gi|330834242|ref|YP_004408970.1| - 5.3e-06 26.3 0.0 1.7e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 RNase_H superfamily DUF816 PF05674.7 gi|330834242|ref|YP_004408970.1| - 0.082 12.6 4.9 0.25 11.0 0.1 2.5 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF816) FlaG PF03646.10 gi|330834242|ref|YP_004408970.1| - 0.083 13.0 2.2 8.2 6.6 0.3 2.8 2 0 0 2 2 2 0 FlaG protein ACT_6 PF13740.1 gi|330834242|ref|YP_004408970.1| - 0.13 11.9 0.0 0.44 10.2 0.0 1.9 1 0 0 1 1 1 0 ACT domain IncA PF04156.9 gi|330834243|ref|YP_004408971.1| - 0.002 17.7 2.0 0.0035 16.9 1.4 1.3 1 0 0 1 1 1 1 IncA protein TMF_DNA_bd PF12329.3 gi|330834243|ref|YP_004408971.1| - 0.01 15.6 2.8 0.017 14.9 1.9 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF812 PF05667.6 gi|330834243|ref|YP_004408971.1| - 0.03 12.8 1.0 0.043 12.3 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) UPF0118 PF01594.11 gi|330834243|ref|YP_004408971.1| - 0.044 12.7 6.6 0.098 11.6 4.1 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF20 DUF4363 PF14276.1 gi|330834243|ref|YP_004408971.1| - 0.051 13.2 1.6 0.11 12.2 1.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4363) CCDC144C PF14915.1 gi|330834243|ref|YP_004408971.1| - 0.056 12.3 1.5 0.081 11.8 1.0 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region COG2 PF06148.6 gi|330834243|ref|YP_004408971.1| - 0.064 13.1 1.4 0.11 12.3 0.9 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TarH PF02203.10 gi|330834243|ref|YP_004408971.1| - 0.086 12.6 6.5 0.14 11.9 4.5 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue ADIP PF11559.3 gi|330834243|ref|YP_004408971.1| - 0.09 12.6 3.5 0.15 11.9 2.4 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding E2R135 PF11570.3 gi|330834243|ref|YP_004408971.1| - 0.26 11.4 0.2 0.43 10.6 0.2 1.2 1 0 0 1 1 1 0 Coiled-coil receptor-binding R-domain of colicin E2 PspA_IM30 PF04012.7 gi|330834243|ref|YP_004408971.1| - 0.31 10.3 2.8 0.47 9.7 1.9 1.1 1 0 0 1 1 1 0 PspA/IM30 family Myosin_tail_1 PF01576.14 gi|330834243|ref|YP_004408971.1| - 0.32 8.6 0.6 0.43 8.2 0.4 1.0 1 0 0 1 1 1 0 Myosin tail TMF_TATA_bd PF12325.3 gi|330834243|ref|YP_004408971.1| - 0.36 10.5 3.5 0.57 9.9 1.5 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Filament PF00038.16 gi|330834243|ref|YP_004408971.1| - 0.39 10.1 4.0 0.59 9.5 2.7 1.1 1 0 0 1 1 1 0 Intermediate filament protein CDC37_N PF03234.9 gi|330834243|ref|YP_004408971.1| - 0.46 10.7 1.0 0.71 10.1 0.7 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding APG17 PF04108.7 gi|330834243|ref|YP_004408971.1| - 1.2 7.8 6.4 1.9 7.2 4.4 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 TPR_MLP1_2 PF07926.7 gi|330834243|ref|YP_004408971.1| - 2.3 7.9 8.4 11 5.7 5.9 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein NAD_binding_5 PF07994.7 gi|330834244|ref|YP_004408972.1| - 1.2e-36 126.7 0.0 1.3e-35 123.3 0.0 2.3 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|330834244|ref|YP_004408972.1| - 1.5e-20 73.0 0.2 3.4e-20 71.9 0.0 1.7 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase Oxidored_q1 PF00361.15 gi|330834245|ref|YP_004408973.1| - 4.4e-43 147.5 26.2 7.1e-43 146.8 18.2 1.3 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|330834246|ref|YP_004408974.1| - 1.5e-79 267.1 66.6 3.1e-50 170.9 18.0 5.2 6 0 0 6 6 6 3 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|330834246|ref|YP_004408974.1| - 0.0076 15.7 3.6 0.0076 15.7 2.5 4.8 4 0 0 4 4 4 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.19 gi|330834247|ref|YP_004408975.1| - 1.8e-12 46.6 9.2 2e-12 46.5 6.4 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TspO_MBR PF03073.10 gi|330834247|ref|YP_004408975.1| - 0.3 10.6 4.6 0.43 10.0 3.2 1.3 1 1 0 1 1 1 0 TspO/MBR family DUF3397 PF11877.3 gi|330834247|ref|YP_004408975.1| - 0.46 10.4 6.0 0.56 10.2 4.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3397) DUF3098 PF11297.3 gi|330834247|ref|YP_004408975.1| - 1.8 8.3 7.0 0.41 10.4 1.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) NicO PF03824.11 gi|330834247|ref|YP_004408975.1| - 3.5 6.8 8.7 2.5 7.3 4.9 1.5 1 1 1 2 2 2 0 High-affinity nickel-transport protein BCLP PF12304.3 gi|330834247|ref|YP_004408975.1| - 7.4 5.9 10.3 13 5.1 7.1 1.5 1 1 0 1 1 1 0 Beta-casein like protein Oxidored_q3 PF00499.15 gi|330834248|ref|YP_004408976.1| - 3.5e-14 52.7 15.9 4.3e-14 52.5 11.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YibE_F PF07907.6 gi|330834248|ref|YP_004408976.1| - 0.4 9.8 14.8 0.51 9.4 10.3 1.2 1 0 0 1 1 1 0 YibE/F-like protein TMEM238 PF15125.1 gi|330834248|ref|YP_004408976.1| - 0.77 9.7 5.4 0.37 10.7 1.3 2.3 2 0 0 2 2 2 0 TMEM238 protein family Fer4 PF00037.22 gi|330834249|ref|YP_004408977.1| - 2.1e-13 49.2 13.4 7.3e-07 28.5 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330834249|ref|YP_004408977.1| - 6.4e-10 38.7 9.9 1.3e-09 37.8 6.8 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834249|ref|YP_004408977.1| - 7.3e-10 39.0 11.0 1.3e-09 38.2 7.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834249|ref|YP_004408977.1| - 3.3e-09 36.1 13.6 0.00018 21.2 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834249|ref|YP_004408977.1| - 3.4e-09 36.3 6.3 6e-09 35.5 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330834249|ref|YP_004408977.1| - 4.1e-08 33.3 9.6 7.3e-08 32.5 6.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330834249|ref|YP_004408977.1| - 2.4e-07 31.3 6.9 0.00011 22.8 5.9 2.4 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330834249|ref|YP_004408977.1| - 6.1e-07 29.6 0.6 0.01 16.1 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834249|ref|YP_004408977.1| - 4.7e-06 26.1 14.0 0.0014 18.4 1.8 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330834249|ref|YP_004408977.1| - 1.9e-05 24.6 10.1 0.014 15.6 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330834249|ref|YP_004408977.1| - 0.00013 22.4 5.9 0.029 14.9 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|330834249|ref|YP_004408977.1| - 0.00013 21.9 8.7 0.0014 18.6 6.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330834249|ref|YP_004408977.1| - 0.0032 17.9 19.1 0.057 14.0 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330834249|ref|YP_004408977.1| - 0.018 15.3 9.6 0.046 14.1 1.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|330834249|ref|YP_004408977.1| - 0.025 14.9 15.4 0.35 11.3 3.0 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain NADHdh PF00146.16 gi|330834250|ref|YP_004408978.1| - 2e-51 174.9 20.7 1.9e-36 125.7 9.5 2.0 2 0 0 2 2 2 2 NADH dehydrogenase Cm_res_leader PF08077.6 gi|330834250|ref|YP_004408978.1| - 0.12 12.1 0.6 9.4 6.1 0.0 2.7 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide Complex1_49kDa PF00346.14 gi|330834251|ref|YP_004408979.1| - 1.5e-65 220.9 0.0 1.8e-65 220.7 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|330834252|ref|YP_004408980.1| - 3.3e-31 107.5 0.0 4.4e-31 107.1 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q4 PF00507.14 gi|330834253|ref|YP_004408981.1| - 6.1e-05 22.7 3.2 8.3e-05 22.3 1.8 1.4 1 1 1 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 COX16 PF14138.1 gi|330834253|ref|YP_004408981.1| - 1 9.5 2.7 2.6 8.2 0.5 2.1 2 0 0 2 2 2 0 Cytochrome c oxidase assembly protein COX16 Thy1 PF02511.10 gi|330834254|ref|YP_004408982.1| - 2e-59 200.1 0.1 2.9e-59 199.6 0.1 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF2175 PF09943.4 gi|330834255|ref|YP_004408983.1| - 2.2e-34 117.4 4.8 2.5e-34 117.3 3.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Vps39_2 PF10367.4 gi|330834255|ref|YP_004408983.1| - 0.00019 21.5 1.5 0.0011 19.1 0.1 2.1 2 0 0 2 2 2 1 Vacuolar sorting protein 39 domain 2 PHD PF00628.24 gi|330834255|ref|YP_004408983.1| - 0.12 12.1 2.3 0.94 9.2 0.4 2.2 2 0 0 2 2 2 0 PHD-finger EMP24_GP25L PF01105.19 gi|330834255|ref|YP_004408983.1| - 0.47 10.1 5.3 1.6 8.4 0.8 1.9 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Spore_YhaL PF14147.1 gi|330834256|ref|YP_004408984.1| - 0.00041 19.7 0.3 0.00098 18.5 0.2 1.6 1 0 0 1 1 1 1 Sporulation protein YhaL F-actin_cap_A PF01267.12 gi|330834256|ref|YP_004408984.1| - 0.14 11.2 0.0 0.23 10.4 0.0 1.3 1 0 0 1 1 1 0 F-actin capping protein alpha subunit DUF364 PF04016.7 gi|330834257|ref|YP_004408985.1| - 7.2e-24 83.7 0.0 9.8e-24 83.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF364) DUF4213 PF13938.1 gi|330834257|ref|YP_004408985.1| - 6.2e-17 61.5 0.0 1.3e-16 60.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4213) NTP_transferase PF00483.18 gi|330834258|ref|YP_004408986.1| - 2.5e-34 118.7 0.0 3.3e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330834258|ref|YP_004408986.1| - 1.8e-11 44.4 0.0 4e-11 43.2 0.0 1.6 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|330834258|ref|YP_004408986.1| - 7e-09 34.7 3.1 1.2e-05 24.5 0.5 3.7 1 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Sod_Fe_C PF02777.13 gi|330834259|ref|YP_004408987.1| - 2.6e-37 126.9 1.0 2.6e-37 126.9 0.7 1.6 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|330834259|ref|YP_004408987.1| - 3.3e-27 94.5 0.1 3.3e-27 94.5 0.1 2.3 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain IGR PF09597.5 gi|330834260|ref|YP_004408988.1| - 0.052 13.4 0.0 0.22 11.4 0.0 2.1 2 0 0 2 2 2 0 IGR protein motif TusA PF01206.12 gi|330834261|ref|YP_004408989.1| - 0.00048 19.6 0.0 0.00066 19.2 0.0 1.3 1 1 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|330834261|ref|YP_004408989.1| - 0.0077 15.7 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) GXGXG PF01493.14 gi|330834262|ref|YP_004408990.1| - 9e-25 86.8 16.0 2.4e-24 85.4 11.1 1.7 1 1 0 1 1 1 1 GXGXG motif GATase_6 PF13522.1 gi|330834262|ref|YP_004408990.1| - 4.2e-15 55.8 0.0 9.1e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330834262|ref|YP_004408990.1| - 6.6e-12 44.8 0.0 5.5e-11 41.7 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|330834262|ref|YP_004408990.1| - 1e-05 25.2 0.0 4e-05 23.3 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase domain Glu_synthase PF01645.12 gi|330834263|ref|YP_004408991.1| - 1.6e-99 333.3 0.2 2.8e-94 316.0 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.9 gi|330834263|ref|YP_004408991.1| - 6.8e-12 45.2 0.0 1.1e-05 24.8 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.13 gi|330834263|ref|YP_004408991.1| - 5e-08 32.1 7.2 0.00024 20.0 2.8 3.2 3 0 0 3 3 3 3 FMN-dependent dehydrogenase NMO PF03060.10 gi|330834263|ref|YP_004408991.1| - 0.032 13.3 7.0 0.19 10.8 4.0 2.0 1 1 0 2 2 2 0 Nitronate monooxygenase IMPDH PF00478.20 gi|330834263|ref|YP_004408991.1| - 0.04 12.7 2.6 0.13 11.1 1.8 1.8 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Hexapep PF00132.19 gi|330834263|ref|YP_004408991.1| - 0.18 11.3 4.5 1.5 8.4 0.6 3.0 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) PcrB PF01884.12 gi|330834263|ref|YP_004408991.1| - 0.7 9.0 3.1 7.4 5.7 0.3 2.5 1 1 1 2 2 2 0 PcrB family Baculo_DNA_bind PF04786.7 gi|330834265|ref|YP_004408993.1| - 0.033 13.3 0.0 0.082 12.0 0.0 1.6 2 0 0 2 2 2 0 ssDNA binding protein UPF0104 PF03706.8 gi|330834266|ref|YP_004408994.1| - 6.6e-10 38.7 17.2 8.8e-10 38.3 11.9 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) DUF1049 PF06305.6 gi|330834266|ref|YP_004408994.1| - 0.27 10.7 2.3 0.3 10.6 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) ThiF PF00899.16 gi|330834267|ref|YP_004408995.1| - 1.4e-41 141.5 0.2 1.9e-41 141.0 0.1 1.2 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|330834267|ref|YP_004408995.1| - 2e-08 33.6 0.4 5.4e-08 32.3 0.3 1.8 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|330834267|ref|YP_004408995.1| - 6.6e-05 22.0 0.0 9.4e-05 21.5 0.0 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|330834267|ref|YP_004408995.1| - 0.044 13.7 0.1 0.081 12.9 0.1 1.4 1 0 0 1 1 1 0 TrkA-N domain Transketolase_N PF00456.16 gi|330834268|ref|YP_004408996.1| - 2.9e-42 144.6 0.0 5.9e-42 143.6 0.0 1.4 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|330834268|ref|YP_004408996.1| - 3e-10 39.5 0.1 1e-06 27.9 0.2 2.5 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.16 gi|330834268|ref|YP_004408996.1| - 3.6e-08 33.1 0.6 4.4e-07 29.5 0.4 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.15 gi|330834268|ref|YP_004408996.1| - 2.6e-05 23.1 0.0 4.2e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Dehydrogenase E1 component XFP_N PF09364.5 gi|330834268|ref|YP_004408996.1| - 4.6e-05 22.1 0.0 6e-05 21.7 0.0 1.1 1 0 0 1 1 1 1 XFP N-terminal domain DUF2421 PF10334.4 gi|330834268|ref|YP_004408996.1| - 0.019 14.5 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2421) Transket_pyr PF02779.19 gi|330834269|ref|YP_004408997.1| - 2.8e-38 131.1 0.0 4.6e-38 130.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|330834269|ref|YP_004408997.1| - 1.1e-28 99.6 0.1 2.3e-28 98.6 0.1 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain DFP PF04127.10 gi|330834269|ref|YP_004408997.1| - 0.073 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein PDH PF02153.12 gi|330834270|ref|YP_004408998.1| - 8.3e-19 67.4 0.0 1.6e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|330834270|ref|YP_004408998.1| - 2.5e-17 62.7 0.6 5.4e-17 61.6 0.4 1.5 1 0 0 1 1 1 1 Chorismate mutase type II F420_oxidored PF03807.12 gi|330834270|ref|YP_004408998.1| - 6.3e-10 39.3 0.0 2.8e-09 37.2 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|330834270|ref|YP_004408998.1| - 8.2e-08 32.4 0.0 2e-07 31.1 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|330834270|ref|YP_004408998.1| - 1e-05 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|330834270|ref|YP_004408998.1| - 8.4e-05 21.9 0.0 0.00013 21.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|330834270|ref|YP_004408998.1| - 0.00055 19.1 0.0 0.001 18.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|330834270|ref|YP_004408998.1| - 0.008 15.8 0.0 0.11 12.1 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|330834270|ref|YP_004408998.1| - 0.12 11.3 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase TraC PF07820.7 gi|330834270|ref|YP_004408998.1| - 0.23 11.6 0.9 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 TraC-like protein DAHP_synth_1 PF00793.15 gi|330834271|ref|YP_004408999.1| - 3.9e-70 235.6 0.0 5.1e-70 235.2 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|330834271|ref|YP_004408999.1| - 8.1e-08 31.7 0.0 3.2e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 NeuB family Dicty_CAD PF05720.7 gi|330834271|ref|YP_004408999.1| - 0.025 14.1 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 Cell-cell adhesion domain GcpE PF04551.9 gi|330834271|ref|YP_004408999.1| - 0.099 11.4 0.0 0.18 10.5 0.0 1.4 2 0 0 2 2 2 0 GcpE protein PA PF02225.17 gi|330834271|ref|YP_004408999.1| - 0.17 11.5 1.3 18 5.0 0.2 2.9 2 1 0 2 2 2 0 PA domain DHQ_synthase PF01761.15 gi|330834272|ref|YP_004409000.1| - 3.3e-93 311.3 0.1 4.1e-93 311.0 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.1 gi|330834272|ref|YP_004409000.1| - 2.2e-06 27.1 0.0 3.7e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|330834272|ref|YP_004409000.1| - 4.5e-05 22.2 0.1 0.21 10.2 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Shikimate_DH PF01488.15 gi|330834273|ref|YP_004409001.1| - 1.7e-11 44.3 0.0 2.4e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Shikimate_dh_N PF08501.6 gi|330834273|ref|YP_004409001.1| - 0.0017 18.4 0.0 0.005 16.8 0.0 1.9 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Saccharop_dh PF03435.13 gi|330834273|ref|YP_004409001.1| - 0.026 13.5 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Saccharopine dehydrogenase FAD_binding_2 PF00890.19 gi|330834273|ref|YP_004409001.1| - 0.051 12.4 0.3 0.07 11.9 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain SGT1 PF07093.6 gi|330834273|ref|YP_004409001.1| - 0.056 11.8 0.0 0.065 11.6 0.0 1.1 1 0 0 1 1 1 0 SGT1 protein Pyr_redox_2 PF07992.9 gi|330834273|ref|YP_004409001.1| - 0.059 13.2 0.2 0.11 12.4 0.1 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Chorismate_synt PF01264.16 gi|330834274|ref|YP_004409002.1| - 7.3e-127 422.6 0.0 8.4e-127 422.4 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.21 gi|330834275|ref|YP_004409003.1| - 1.9e-09 37.4 1.1 4.5e-09 36.2 0.5 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330834275|ref|YP_004409003.1| - 0.00056 20.0 0.1 0.0012 18.9 0.1 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal EPSP_synthase PF00275.15 gi|330834276|ref|YP_004409004.1| - 1.4e-53 181.8 0.0 1.8e-50 171.6 0.0 2.0 1 1 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHquinase_I PF01487.10 gi|330834277|ref|YP_004409005.1| - 1.9e-11 44.0 0.1 6.2e-08 32.5 0.0 2.1 2 0 0 2 2 2 2 Type I 3-dehydroquinase Rieske PF00355.21 gi|330834278|ref|YP_004409006.1| - 3.3e-13 49.0 0.0 3.8e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|330834278|ref|YP_004409006.1| - 1.7e-06 27.6 0.0 2.1e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain NapD PF03927.8 gi|330834279|ref|YP_004409007.1| - 0.02 14.7 0.1 0.028 14.2 0.1 1.2 1 0 0 1 1 1 0 NapD protein Helicase_C_2 PF13307.1 gi|330834280|ref|YP_004409008.1| - 5.8e-26 91.4 0.2 1.8e-25 89.8 0.0 1.9 2 1 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|330834280|ref|YP_004409008.1| - 6.1e-23 81.1 0.1 1.5e-22 79.8 0.1 1.7 1 1 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|330834280|ref|YP_004409008.1| - 1.1e-08 35.0 0.5 5.9e-08 32.7 0.1 2.3 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330834280|ref|YP_004409008.1| - 8.7e-07 28.5 0.2 0.0025 17.3 0.0 3.4 4 0 0 4 4 4 2 DEAD/DEAH box helicase PhoH PF02562.11 gi|330834280|ref|YP_004409008.1| - 0.0014 17.9 0.5 0.13 11.5 0.0 2.7 3 0 0 3 3 3 1 PhoH-like protein UPF0079 PF02367.12 gi|330834280|ref|YP_004409008.1| - 0.012 15.2 0.1 0.036 13.7 0.1 1.8 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SNF2_N PF00176.18 gi|330834280|ref|YP_004409008.1| - 0.12 11.1 0.1 0.23 10.2 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|330834280|ref|YP_004409008.1| - 0.26 11.4 3.1 1.6 8.8 0.8 2.5 2 1 0 2 2 2 0 AAA domain Thioredoxin_3 PF13192.1 gi|330834281|ref|YP_004409009.1| - 1.2e-08 34.6 0.0 2.4e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.19 gi|330834281|ref|YP_004409009.1| - 0.0018 18.2 0.0 0.0047 16.8 0.0 1.8 1 1 0 1 1 1 1 Glutaredoxin STAG PF08514.6 gi|330834281|ref|YP_004409009.1| - 0.097 12.3 0.0 0.22 11.2 0.0 1.6 2 0 0 2 2 2 0 STAG domain Thioredoxin_4 PF13462.1 gi|330834281|ref|YP_004409009.1| - 0.12 12.3 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Thioredoxin Ribosomal_L16 PF00252.13 gi|330834282|ref|YP_004409010.1| - 2.7e-29 101.5 0.2 3.2e-29 101.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.12 gi|330834283|ref|YP_004409011.1| - 1.4e-94 316.8 0.0 1.6e-94 316.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein ECR1_N PF14382.1 gi|330834284|ref|YP_004409012.1| - 1e-11 43.9 0.1 6.2e-11 41.4 0.1 2.2 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region DZR PF12773.2 gi|330834284|ref|YP_004409012.1| - 0.0022 17.7 0.1 0.0036 17.0 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|330834284|ref|YP_004409012.1| - 0.0031 16.9 0.7 0.0057 16.0 0.5 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|330834284|ref|YP_004409012.1| - 0.0056 16.1 0.3 0.011 15.2 0.2 1.5 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain S1 PF00575.18 gi|330834284|ref|YP_004409012.1| - 0.006 16.6 0.5 0.055 13.5 0.3 2.2 1 1 0 1 1 1 1 S1 RNA binding domain OrfB_Zn_ribbon PF07282.6 gi|330834284|ref|YP_004409012.1| - 0.02 14.5 0.7 0.036 13.7 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TerY-C PF15616.1 gi|330834284|ref|YP_004409012.1| - 0.023 14.5 0.3 0.21 11.4 0.1 2.0 2 0 0 2 2 2 0 TerY-C metal binding domain Auto_anti-p27 PF06677.7 gi|330834284|ref|YP_004409012.1| - 0.048 13.4 1.0 0.081 12.6 0.7 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.14 gi|330834284|ref|YP_004409012.1| - 0.081 12.6 0.2 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|330834284|ref|YP_004409012.1| - 0.088 12.0 3.6 0.25 10.5 2.4 1.8 1 1 0 1 1 1 0 zinc-ribbon domain DUF2318 PF10080.4 gi|330834284|ref|YP_004409012.1| - 0.093 12.5 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF3725 PF12523.3 gi|330834284|ref|YP_004409012.1| - 0.14 12.2 0.2 1.5 8.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) RNA_POL_M_15KD PF02150.11 gi|330834284|ref|YP_004409012.1| - 0.46 10.2 3.3 1 9.1 2.3 1.5 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit RecR PF02132.10 gi|330834284|ref|YP_004409012.1| - 1.2 8.6 4.9 3.4 7.1 0.1 2.3 1 1 1 2 2 2 0 RecR protein RNA_pol_L_2 PF13656.1 gi|330834285|ref|YP_004409013.1| - 3.4e-21 74.4 0.0 3.9e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|330834285|ref|YP_004409013.1| - 6.5e-12 44.3 0.0 9e-12 43.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.13 gi|330834287|ref|YP_004409015.1| - 1.1e-22 79.4 12.9 8e-21 73.3 1.3 3.2 3 0 0 3 3 3 2 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|330834287|ref|YP_004409015.1| - 2.5e-08 33.4 2.6 2.5e-08 33.4 1.8 2.7 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.2 gi|330834287|ref|YP_004409015.1| - 5.2e-08 32.5 7.9 0.0012 18.5 1.1 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2387 PF09526.5 gi|330834287|ref|YP_004409015.1| - 3.9e-06 26.7 5.0 0.0001 22.1 0.6 2.4 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.1 gi|330834287|ref|YP_004409015.1| - 4.5e-05 22.5 1.0 4.5e-05 22.5 0.7 2.7 2 1 0 2 2 2 1 Transcription factor zinc-finger DZR PF12773.2 gi|330834287|ref|YP_004409015.1| - 0.00065 19.4 7.3 0.031 14.0 0.5 2.7 2 1 0 2 2 2 2 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|330834287|ref|YP_004409015.1| - 0.0073 15.9 8.5 0.47 10.1 0.8 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.1 gi|330834287|ref|YP_004409015.1| - 0.019 14.1 13.4 2.4 7.4 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain zf-UBP PF02148.14 gi|330834287|ref|YP_004409015.1| - 0.021 14.9 1.2 0.38 10.8 0.2 2.4 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zinc_ribbon_2 PF13240.1 gi|330834287|ref|YP_004409015.1| - 0.021 14.2 15.2 5.7 6.5 0.1 4.2 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|330834287|ref|YP_004409015.1| - 0.023 14.2 16.8 0.23 11.0 0.2 4.3 3 2 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330834287|ref|YP_004409015.1| - 0.034 13.8 17.3 0.31 10.7 0.3 4.2 3 2 0 3 3 3 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|330834287|ref|YP_004409015.1| - 0.045 13.7 8.1 14 5.8 0.3 4.1 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|330834287|ref|YP_004409015.1| - 0.047 13.6 13.4 6.7 6.7 0.4 4.2 3 1 0 4 4 4 0 Zinc ribbon domain IBR PF01485.16 gi|330834287|ref|YP_004409015.1| - 0.065 13.1 7.7 0.88 9.4 1.7 3.0 3 0 0 3 3 3 0 IBR domain C1_1 PF00130.17 gi|330834287|ref|YP_004409015.1| - 0.081 12.6 8.9 0.39 10.4 1.1 3.0 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Desulfoferrod_N PF06397.7 gi|330834287|ref|YP_004409015.1| - 0.084 12.2 9.9 1.2 8.6 0.1 3.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain Terminase_GpA PF05876.7 gi|330834287|ref|YP_004409015.1| - 0.096 11.0 3.6 0.034 12.5 0.5 1.6 1 1 0 2 2 2 0 Phage terminase large subunit (GpA) Ribosomal_L37ae PF01780.14 gi|330834287|ref|YP_004409015.1| - 0.11 12.3 0.2 0.11 12.3 0.2 2.7 2 1 0 2 2 2 0 Ribosomal L37ae protein family Nudix_N_2 PF14803.1 gi|330834287|ref|YP_004409015.1| - 0.13 11.9 8.6 9.4 6.0 0.1 4.2 4 1 0 4 4 4 0 Nudix N-terminal PolC_DP2 PF03833.8 gi|330834287|ref|YP_004409015.1| - 0.21 9.2 2.5 0.25 8.9 1.7 1.3 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 eIF-5_eIF-2B PF01873.12 gi|330834287|ref|YP_004409015.1| - 0.24 11.0 6.5 2.5 7.7 0.7 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 zf-CHY PF05495.7 gi|330834287|ref|YP_004409015.1| - 0.24 11.5 8.1 2.2 8.5 2.3 2.6 1 1 1 2 2 2 0 CHY zinc finger zinc-ribbons_6 PF07191.7 gi|330834287|ref|YP_004409015.1| - 0.25 11.1 3.1 0.81 9.5 0.3 2.6 3 0 0 3 3 3 0 zinc-ribbons DUF2082 PF09855.4 gi|330834287|ref|YP_004409015.1| - 0.29 11.0 9.1 6.1 6.7 0.0 3.9 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) C1_2 PF03107.11 gi|330834287|ref|YP_004409015.1| - 0.69 10.0 9.2 2.7 8.2 0.2 3.3 3 0 0 3 3 3 0 C1 domain Baculo_ME53 PF06061.6 gi|330834287|ref|YP_004409015.1| - 1.1 8.1 8.0 1.8 7.4 0.4 2.4 2 1 0 2 2 2 0 Baculoviridae ME53 Baculo_LEF5_C PF11792.3 gi|330834287|ref|YP_004409015.1| - 1.2 8.5 0.0 1.2 8.5 0.0 4.3 5 0 0 5 5 5 0 Baculoviridae late expression factor 5 C-terminal domain Lar_restr_allev PF14354.1 gi|330834287|ref|YP_004409015.1| - 1.4 9.3 9.1 10 6.4 0.0 3.2 1 1 2 3 3 3 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.12 gi|330834287|ref|YP_004409015.1| - 1.8 8.1 9.3 3.1 7.4 0.6 3.4 2 2 0 2 2 2 0 Ribosomal protein S27 YhfH PF14149.1 gi|330834287|ref|YP_004409015.1| - 2.5 7.9 12.0 8.4 6.2 0.0 4.1 4 0 0 4 4 4 0 YhfH-like protein zf-HIT PF04438.11 gi|330834287|ref|YP_004409015.1| - 2.6 7.7 15.5 9.7 5.9 0.3 4.0 4 0 0 4 4 4 0 HIT zinc finger zf-Mss51 PF13824.1 gi|330834287|ref|YP_004409015.1| - 3.4 7.5 7.8 2.9 7.7 0.6 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Rpr2 PF04032.11 gi|330834287|ref|YP_004409015.1| - 3.7 7.4 11.9 9.9 6.1 0.4 3.2 2 2 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Zn_ribbon_recom PF13408.1 gi|330834287|ref|YP_004409015.1| - 4 7.7 12.9 0.24 11.7 0.8 2.7 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-MYND PF01753.13 gi|330834287|ref|YP_004409015.1| - 4.7 7.1 9.6 0.62 9.9 0.4 2.7 2 1 0 2 2 2 0 MYND finger zf-UBR PF02207.15 gi|330834287|ref|YP_004409015.1| - 5.1 6.9 8.3 3.8 7.2 0.2 3.0 2 1 1 3 3 3 0 Putative zinc finger in N-recognin (UBR box) UPF0547 PF10571.4 gi|330834287|ref|YP_004409015.1| - 5.3 6.8 12.9 16 5.3 0.1 4.0 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 HypA PF01155.14 gi|330834287|ref|YP_004409015.1| - 5.4 6.7 7.9 4.3e+02 0.6 5.5 2.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|330834287|ref|YP_004409015.1| - 5.7 6.7 12.4 3.1 7.6 1.6 3.4 2 2 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) C1_4 PF07975.7 gi|330834287|ref|YP_004409015.1| - 7.2 6.7 9.7 18 5.3 0.8 3.2 2 2 0 2 2 2 0 TFIIH C1-like domain DM PF00751.13 gi|330834287|ref|YP_004409015.1| - 8.7 5.9 8.6 63 3.2 0.4 3.8 4 0 0 4 4 4 0 DM DNA binding domain TF_Zn_Ribbon PF08271.7 gi|330834287|ref|YP_004409015.1| - 8.9 5.7 15.5 1.8 7.9 0.9 4.1 3 2 1 4 4 4 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|330834287|ref|YP_004409015.1| - 9.8 5.7 13.8 4.9 6.7 0.0 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain NTP_transferase PF00483.18 gi|330834288|ref|YP_004409016.1| - 2.3e-28 99.1 0.0 2.4e-27 95.8 0.0 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330834288|ref|YP_004409016.1| - 4.3e-11 43.1 0.0 5.2e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|330834288|ref|YP_004409016.1| - 0.00042 19.8 0.0 0.0049 16.4 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.1 gi|330834288|ref|YP_004409016.1| - 0.21 11.1 1.3 14 5.3 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4224) bact-PGI_C PF10432.4 gi|330834289|ref|YP_004409017.1| - 1.8e-27 95.9 0.0 1.2e-26 93.2 0.0 2.0 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|330834289|ref|YP_004409017.1| - 0.0016 18.0 0.1 0.0095 15.5 0.0 2.1 2 1 0 3 3 3 1 SIS domain SIS_2 PF13580.1 gi|330834289|ref|YP_004409017.1| - 0.016 14.9 0.6 0.05 13.3 0.0 1.9 1 1 1 2 2 2 0 SIS domain Glycos_transf_2 PF00535.21 gi|330834290|ref|YP_004409018.1| - 5.8e-14 52.1 0.1 8.1e-14 51.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.4 gi|330834290|ref|YP_004409018.1| - 2.7e-08 33.2 0.6 3.1e-06 26.4 0.4 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.1 gi|330834290|ref|YP_004409018.1| - 6.9e-06 26.0 0.4 7.6e-05 22.6 0.1 2.0 1 1 1 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330834290|ref|YP_004409018.1| - 4.1e-05 23.3 0.5 0.019 14.6 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|330834290|ref|YP_004409018.1| - 0.00028 20.2 0.3 0.0078 15.5 0.1 2.3 1 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.1 gi|330834290|ref|YP_004409018.1| - 0.018 15.3 0.1 0.036 14.3 0.1 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Chitin_synth_2 PF03142.10 gi|330834290|ref|YP_004409018.1| - 0.13 10.5 0.7 0.21 9.9 0.5 1.2 1 0 0 1 1 1 0 Chitin synthase Glycos_transf_1 PF00534.15 gi|330834291|ref|YP_004409019.1| - 9.1e-11 41.4 0.0 1.9e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330834291|ref|YP_004409019.1| - 0.001 19.2 0.0 0.0027 17.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330834291|ref|YP_004409019.1| - 0.0056 16.4 0.0 0.024 14.3 0.0 2.1 2 1 0 2 2 2 1 Glycosyltransferase Family 4 A2M_N PF01835.14 gi|330834292|ref|YP_004409020.1| - 5.2e-10 39.4 1.7 2.5e-07 30.8 0.4 2.9 1 1 1 2 2 2 1 MG2 domain CarboxypepD_reg PF13620.1 gi|330834292|ref|YP_004409020.1| - 7.8e-10 38.6 30.8 9.4e-08 32.0 3.5 4.1 3 2 0 3 3 3 2 Carboxypeptidase regulatory-like domain Reo_sigmaC PF04582.7 gi|330834292|ref|YP_004409020.1| - 1.6e-05 24.2 10.7 3e-05 23.3 7.4 1.4 1 0 0 1 1 1 1 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|330834292|ref|YP_004409020.1| - 2e-05 24.4 0.1 3.1e-05 23.8 0.1 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) ADIP PF11559.3 gi|330834292|ref|YP_004409020.1| - 7.8e-05 22.6 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.3 gi|330834292|ref|YP_004409020.1| - 0.00022 20.9 1.0 0.00071 19.3 0.5 1.7 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding LPP PF04728.8 gi|330834292|ref|YP_004409020.1| - 0.00061 19.5 3.8 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 Lipoprotein leucine-zipper COG5 PF10392.4 gi|330834292|ref|YP_004409020.1| - 0.00079 19.3 6.2 0.018 15.0 0.3 2.2 1 1 1 2 2 2 2 Golgi transport complex subunit 5 DUF4198 PF10670.4 gi|330834292|ref|YP_004409020.1| - 0.0014 18.6 0.5 0.004 17.1 0.3 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) AAA_13 PF13166.1 gi|330834292|ref|YP_004409020.1| - 0.0025 16.3 0.0 0.0034 15.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain FlgD_ig PF13860.1 gi|330834292|ref|YP_004409020.1| - 0.0036 17.0 8.2 0.36 10.6 0.1 3.6 2 1 1 3 3 3 2 FlgD Ig-like domain IncA PF04156.9 gi|330834292|ref|YP_004409020.1| - 0.0052 16.4 0.5 0.0052 16.4 0.4 2.4 1 1 1 2 2 1 1 IncA protein TBPIP PF07106.8 gi|330834292|ref|YP_004409020.1| - 0.0057 16.2 0.0 0.0092 15.5 0.0 1.2 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bacillus_HBL PF05791.6 gi|330834292|ref|YP_004409020.1| - 0.0057 16.0 1.0 0.0088 15.4 0.7 1.3 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) DUF3244 PF11589.3 gi|330834292|ref|YP_004409020.1| - 0.0062 16.2 0.1 0.44 10.2 0.0 3.2 1 1 1 2 2 2 1 Domain of unknown function (DUF3244) Laminin_II PF06009.7 gi|330834292|ref|YP_004409020.1| - 0.0086 15.8 1.6 0.015 15.0 1.1 1.3 1 0 0 1 1 1 1 Laminin Domain II BLOC1_2 PF10046.4 gi|330834292|ref|YP_004409020.1| - 0.012 15.7 0.3 0.026 14.6 0.2 1.6 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Macoilin PF09726.4 gi|330834292|ref|YP_004409020.1| - 0.012 13.9 0.0 0.012 13.9 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF948 PF06103.6 gi|330834292|ref|YP_004409020.1| - 0.014 15.2 2.6 0.014 15.2 1.8 2.9 2 1 0 2 2 1 0 Bacterial protein of unknown function (DUF948) EMP24_GP25L PF01105.19 gi|330834292|ref|YP_004409020.1| - 0.016 14.9 2.2 0.21 11.2 0.8 2.3 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF869 PF05911.6 gi|330834292|ref|YP_004409020.1| - 0.018 13.2 0.1 0.024 12.8 0.1 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Spc7 PF08317.6 gi|330834292|ref|YP_004409020.1| - 0.021 13.5 0.1 0.03 12.9 0.1 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Cna_B PF05738.8 gi|330834292|ref|YP_004409020.1| - 0.021 14.5 16.9 0.039 13.7 0.9 3.4 3 0 0 3 3 2 0 Cna protein B-type domain YtkA PF13115.1 gi|330834292|ref|YP_004409020.1| - 0.023 15.0 2.5 15 6.0 0.1 4.0 2 2 2 4 4 4 0 YtkA-like DUF4140 PF13600.1 gi|330834292|ref|YP_004409020.1| - 0.03 14.7 1.6 2.4 8.6 0.1 2.7 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF1664 PF07889.7 gi|330834292|ref|YP_004409020.1| - 0.032 14.0 0.1 0.061 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) FlaC_arch PF05377.6 gi|330834292|ref|YP_004409020.1| - 0.038 13.8 0.8 0.64 9.9 0.1 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.7 gi|330834292|ref|YP_004409020.1| - 0.048 13.9 5.1 0.28 11.4 1.9 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DegS PF05384.6 gi|330834292|ref|YP_004409020.1| - 0.055 12.6 0.1 0.081 12.1 0.1 1.2 1 0 0 1 1 1 0 Sensor protein DegS Rab5-bind PF09311.6 gi|330834292|ref|YP_004409020.1| - 0.091 12.6 0.1 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Rabaptin-like protein SlyX PF04102.7 gi|330834292|ref|YP_004409020.1| - 0.15 12.4 0.0 18 5.8 0.0 2.0 1 1 1 2 2 2 0 SlyX DivIC PF04977.10 gi|330834292|ref|YP_004409020.1| - 0.17 11.3 0.0 0.59 9.6 0.0 1.9 1 1 1 2 2 2 0 Septum formation initiator Vps51 PF08700.6 gi|330834292|ref|YP_004409020.1| - 0.19 11.5 1.8 0.8 9.5 0.4 2.1 1 1 1 2 2 2 0 Vps51/Vps67 Rifin_STEVOR PF02009.11 gi|330834292|ref|YP_004409020.1| - 0.23 11.0 4.8 0.35 10.4 3.3 1.3 1 0 0 1 1 1 0 Rifin/stevor family Sas10_Utp3 PF04000.10 gi|330834292|ref|YP_004409020.1| - 0.25 11.5 4.0 0.78 9.9 0.2 2.4 1 1 1 2 2 2 0 Sas10/Utp3/C1D family EzrA PF06160.7 gi|330834292|ref|YP_004409020.1| - 0.28 9.2 0.0 0.28 9.2 0.0 1.6 2 0 0 2 2 1 0 Septation ring formation regulator, EzrA MbeD_MobD PF04899.7 gi|330834292|ref|YP_004409020.1| - 0.67 9.9 2.6 13 5.8 0.3 2.4 1 1 1 2 2 2 0 MbeD/MobD like Methylase_S PF01420.14 gi|330834292|ref|YP_004409020.1| - 0.96 9.4 3.6 3.8 7.4 0.0 2.5 2 1 1 3 3 2 0 Type I restriction modification DNA specificity domain MscS_porin PF12795.2 gi|330834292|ref|YP_004409020.1| - 1.1 8.5 9.0 3.4 6.9 6.2 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DASH_Spc19 PF08287.6 gi|330834292|ref|YP_004409020.1| - 1.2 8.7 9.8 3.2 7.3 1.0 2.2 1 1 1 2 2 2 0 Spc19 HsbA PF12296.3 gi|330834292|ref|YP_004409020.1| - 1.2 8.9 10.8 0.42 10.4 5.0 2.1 2 0 0 2 2 1 0 Hydrophobic surface binding protein A FlxA PF14282.1 gi|330834292|ref|YP_004409020.1| - 3.4 7.6 8.6 11 6.0 6.0 1.9 1 0 0 1 1 1 0 FlxA-like protein LURAP PF14854.1 gi|330834292|ref|YP_004409020.1| - 6.2 6.5 12.2 0.4 10.3 1.3 2.3 1 1 1 2 2 2 0 Leucine rich adaptor protein Reeler PF02014.11 gi|330834293|ref|YP_004409021.1| - 0.75 10.0 3.9 0.47 10.7 0.1 2.7 3 0 0 3 3 3 0 Reeler domain STT3 PF02516.9 gi|330834294|ref|YP_004409022.1| - 2.6e-17 62.9 36.7 5.7e-17 61.8 25.4 1.5 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Ribosomal_L44 PF00935.14 gi|330834295|ref|YP_004409023.1| - 1e-27 95.8 9.7 1e-27 95.8 6.8 1.4 1 1 1 2 2 2 1 Ribosomal protein L44 Zn-ribbon_8 PF09723.5 gi|330834295|ref|YP_004409023.1| - 0.0095 15.8 0.9 0.62 10.0 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain zf-ISL3 PF14690.1 gi|330834295|ref|YP_004409023.1| - 0.011 15.7 4.7 0.86 9.6 0.5 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.1 gi|330834295|ref|YP_004409023.1| - 0.024 14.6 1.0 0.6 10.0 0.0 2.1 2 0 0 2 2 2 0 CpXC protein zf-UBR PF02207.15 gi|330834295|ref|YP_004409023.1| - 0.032 13.9 1.6 4.3 7.1 0.0 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) DZR PF12773.2 gi|330834295|ref|YP_004409023.1| - 0.039 13.7 3.1 0.14 12.0 2.1 1.8 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|330834295|ref|YP_004409023.1| - 0.04 13.8 3.2 0.99 9.3 2.4 2.1 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme DUF2082 PF09855.4 gi|330834295|ref|YP_004409023.1| - 0.04 13.7 2.0 0.93 9.3 0.2 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|330834295|ref|YP_004409023.1| - 0.043 13.0 1.3 6 6.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|330834295|ref|YP_004409023.1| - 0.045 13.5 2.2 4 7.2 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2387 PF09526.5 gi|330834295|ref|YP_004409023.1| - 0.048 13.5 0.3 10 6.1 0.0 2.3 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-TFIIB PF13453.1 gi|330834295|ref|YP_004409023.1| - 0.069 12.3 0.4 5.5 6.2 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|330834295|ref|YP_004409023.1| - 0.077 12.5 5.6 2.7 7.5 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|330834295|ref|YP_004409023.1| - 0.082 13.2 1.2 0.63 10.3 0.8 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar NOB1_Zn_bind PF08772.6 gi|330834295|ref|YP_004409023.1| - 0.093 12.5 1.9 1.3 8.9 0.1 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_4 PF13717.1 gi|330834295|ref|YP_004409023.1| - 0.11 12.2 2.5 6.9 6.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330834295|ref|YP_004409023.1| - 0.25 11.1 2.8 11 5.9 0.4 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|330834295|ref|YP_004409023.1| - 0.25 10.9 4.4 2.3 7.9 0.4 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF2296 PF10058.4 gi|330834295|ref|YP_004409023.1| - 0.27 11.0 2.5 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Tnp_zf-ribbon_2 PF13842.1 gi|330834295|ref|YP_004409023.1| - 0.31 11.4 5.3 1.9 8.9 0.9 2.4 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF1610 PF07754.6 gi|330834295|ref|YP_004409023.1| - 0.4 10.8 2.8 6.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin PF00301.15 gi|330834295|ref|YP_004409023.1| - 0.47 10.3 2.9 4 7.3 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_5 PF13719.1 gi|330834295|ref|YP_004409023.1| - 1 8.9 5.2 10 5.8 0.3 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Ribosomal_L37ae PF01780.14 gi|330834295|ref|YP_004409023.1| - 1.3 8.9 8.0 0.29 11.0 2.5 1.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family OrfB_Zn_ribbon PF07282.6 gi|330834295|ref|YP_004409023.1| - 2.4 7.8 5.6 2.6 7.7 0.3 2.6 1 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.1 gi|330834295|ref|YP_004409023.1| - 4.1 7.8 6.5 5.9 7.3 0.5 2.5 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_L33 PF00471.15 gi|330834295|ref|YP_004409023.1| - 8.1 6.7 12.4 0.36 11.1 0.8 3.0 2 1 0 2 2 2 0 Ribosomal protein L33 Ribosomal_S27e PF01667.12 gi|330834296|ref|YP_004409024.1| - 8.8e-18 63.6 0.7 9.5e-18 63.4 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 DNA_ligase_ZBD PF03119.11 gi|330834296|ref|YP_004409024.1| - 0.007 16.0 2.2 0.16 11.6 0.0 2.3 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_5 PF13719.1 gi|330834296|ref|YP_004409024.1| - 0.0091 15.5 0.8 0.18 11.4 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330834296|ref|YP_004409024.1| - 0.012 15.2 1.0 0.22 11.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|330834296|ref|YP_004409024.1| - 0.017 14.3 1.8 3.2 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|330834296|ref|YP_004409024.1| - 0.019 14.6 0.2 0.022 14.4 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|330834296|ref|YP_004409024.1| - 0.021 14.2 0.8 0.58 9.6 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|330834296|ref|YP_004409024.1| - 0.022 14.2 3.3 0.055 12.9 2.3 1.7 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330834296|ref|YP_004409024.1| - 0.033 13.5 1.1 0.043 13.1 0.8 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|330834296|ref|YP_004409024.1| - 0.034 14.1 0.5 0.057 13.3 0.4 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|330834296|ref|YP_004409024.1| - 0.039 13.8 1.9 0.57 10.1 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS91 PF14319.1 gi|330834296|ref|YP_004409024.1| - 0.063 12.7 0.5 0.078 12.4 0.3 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain PADR1 PF08063.7 gi|330834296|ref|YP_004409024.1| - 0.075 12.4 2.6 0.12 11.7 0.2 1.9 1 1 1 2 2 2 0 PADR1 (NUC008) domain TFIIS_C PF01096.13 gi|330834296|ref|YP_004409024.1| - 0.11 12.1 3.4 1.5 8.4 0.3 2.3 1 1 2 3 3 3 0 Transcription factor S-II (TFIIS) DNA_RNApol_7kD PF03604.8 gi|330834296|ref|YP_004409024.1| - 0.11 11.9 3.2 1.4 8.4 2.2 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-LSD1 PF06943.7 gi|330834296|ref|YP_004409024.1| - 0.12 11.9 8.1 1.6 8.3 0.4 2.2 2 0 0 2 2 2 0 LSD1 zinc finger zf-ISL3 PF14690.1 gi|330834296|ref|YP_004409024.1| - 0.14 12.1 0.6 15 5.6 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3797 PF12677.2 gi|330834296|ref|YP_004409024.1| - 0.43 10.2 3.5 6.1 6.5 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.7 gi|330834297|ref|YP_004409025.1| - 6.2e-23 80.6 0.2 6.2e-23 80.6 0.1 1.9 3 0 0 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|330834297|ref|YP_004409025.1| - 3.4e-12 46.2 0.2 1.1e-11 44.6 0.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain Paf67 PF10255.4 gi|330834297|ref|YP_004409025.1| - 0.048 12.5 0.1 0.063 12.1 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase I-associated factor PAF67 CPSF73-100_C PF11718.3 gi|330834297|ref|YP_004409025.1| - 0.075 12.3 4.4 0.53 9.5 2.4 2.5 1 1 1 2 2 2 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term DELLA PF12041.3 gi|330834297|ref|YP_004409025.1| - 0.12 12.0 2.0 0.19 11.4 0.1 2.2 2 1 1 3 3 3 0 Transcriptional regulator DELLA protein N terminal N6_N4_Mtase PF01555.13 gi|330834297|ref|YP_004409025.1| - 0.25 10.8 3.6 0.33 10.4 2.5 1.2 1 0 0 1 1 1 0 DNA methylase Matrilin_ccoil PF10393.4 gi|330834297|ref|YP_004409025.1| - 1.3 8.4 5.2 12 5.4 0.1 2.4 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin SIMPL PF04402.9 gi|330834297|ref|YP_004409025.1| - 1.9 8.3 5.6 0.56 10.0 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF541) Nop10p PF04135.7 gi|330834298|ref|YP_004409026.1| - 9.4e-22 76.5 1.6 9.7e-22 76.4 1.1 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-NADH-PPase PF09297.6 gi|330834298|ref|YP_004409026.1| - 0.02 14.3 2.7 0.88 9.1 0.9 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|330834298|ref|YP_004409026.1| - 0.026 13.7 0.8 0.054 12.7 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|330834298|ref|YP_004409026.1| - 0.052 13.3 0.2 0.076 12.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon NOB1_Zn_bind PF08772.6 gi|330834298|ref|YP_004409026.1| - 0.11 12.3 0.4 0.12 12.1 0.2 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like PolC_DP2 PF03833.8 gi|330834298|ref|YP_004409026.1| - 0.13 9.8 0.1 0.13 9.9 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ISL3 PF14690.1 gi|330834298|ref|YP_004409026.1| - 0.18 11.8 3.5 0.44 10.6 0.7 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.3 gi|330834298|ref|YP_004409026.1| - 7.6 6.5 8.5 14 5.7 3.0 2.4 1 1 1 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) OCD_Mu_crystall PF02423.10 gi|330834299|ref|YP_004409027.1| - 1.1e-41 142.6 0.2 1.3e-41 142.4 0.1 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|330834299|ref|YP_004409027.1| - 0.0023 18.0 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|330834299|ref|YP_004409027.1| - 0.0057 15.8 0.0 0.0096 15.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|330834299|ref|YP_004409027.1| - 0.1 13.0 0.1 0.47 10.9 0.0 2.1 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pkinase PF00069.20 gi|330834300|ref|YP_004409028.1| - 1.2e-27 96.7 0.0 1.6e-27 96.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|330834300|ref|YP_004409028.1| - 1.5e-12 47.1 0.0 2.5e-12 46.4 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Herpes_LMP1 PF05297.6 gi|330834300|ref|YP_004409028.1| - 0.52 9.1 9.1 0.91 8.3 6.3 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Gp5_C PF06715.7 gi|330834301|ref|YP_004409029.1| - 0.14 12.1 0.5 0.26 11.2 0.3 1.5 1 0 0 1 1 1 0 Gp5 C-terminal repeat (3 copies) NUMOD4 PF07463.6 gi|330834302|ref|YP_004409030.1| - 0.12 12.2 0.6 0.31 10.9 0.4 1.7 1 1 0 1 1 1 0 NUMOD4 motif Enterotoxin_HS1 PF08090.6 gi|330834303|ref|YP_004409031.1| - 0.06 13.1 0.2 0.079 12.7 0.1 1.3 1 0 0 1 1 1 0 Heat stable E.coli enterotoxin 1 DNA_primase_S PF01896.14 gi|330834304|ref|YP_004409032.1| - 9.4e-16 57.9 0.1 4e-15 55.9 0.0 2.0 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit PCNA_C PF02747.10 gi|330834305|ref|YP_004409033.1| - 8e-13 48.4 0.2 1e-10 41.6 0.0 2.7 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|330834305|ref|YP_004409033.1| - 2.5e-07 30.2 0.0 8.1e-07 28.5 0.0 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.11 gi|330834305|ref|YP_004409033.1| - 1e-05 24.4 0.3 0.068 11.9 0.0 2.1 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Hus1 PF04005.7 gi|330834305|ref|YP_004409033.1| - 0.013 14.4 0.1 0.14 11.1 0.0 2.1 1 1 1 2 2 2 0 Hus1-like protein Rad9 PF04139.8 gi|330834305|ref|YP_004409033.1| - 0.03 13.4 0.0 0.061 12.4 0.0 1.6 1 1 0 1 1 1 0 Rad9 ATP_bind_1 PF03029.12 gi|330834306|ref|YP_004409034.1| - 2.4e-57 194.2 0.0 2.7e-57 194.0 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_17 PF13207.1 gi|330834306|ref|YP_004409034.1| - 8.3e-05 23.3 0.0 0.00017 22.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330834306|ref|YP_004409034.1| - 0.0011 18.9 0.0 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|330834306|ref|YP_004409034.1| - 0.0023 17.4 0.0 0.0089 15.4 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain PduV-EutP PF10662.4 gi|330834306|ref|YP_004409034.1| - 0.0037 16.7 0.0 0.16 11.4 0.0 2.9 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation MobB PF03205.9 gi|330834306|ref|YP_004409034.1| - 0.0063 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|330834306|ref|YP_004409034.1| - 0.0069 15.8 0.0 0.019 14.3 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_18 PF13238.1 gi|330834306|ref|YP_004409034.1| - 0.0087 16.3 0.0 0.015 15.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330834306|ref|YP_004409034.1| - 0.011 14.8 0.0 0.076 12.1 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function, DUF258 FeoB_N PF02421.13 gi|330834306|ref|YP_004409034.1| - 0.011 14.9 0.0 3 7.1 0.0 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B NACHT PF05729.7 gi|330834306|ref|YP_004409034.1| - 0.019 14.6 0.0 0.047 13.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|330834306|ref|YP_004409034.1| - 0.029 13.7 0.0 0.69 9.3 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.15 gi|330834306|ref|YP_004409034.1| - 0.033 12.8 0.0 0.056 12.1 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit KTI12 PF08433.5 gi|330834306|ref|YP_004409034.1| - 0.036 13.2 0.0 0.054 12.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|330834306|ref|YP_004409034.1| - 0.044 13.7 0.0 0.14 12.1 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|330834306|ref|YP_004409034.1| - 0.052 13.1 0.0 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|330834306|ref|YP_004409034.1| - 0.057 12.9 0.0 0.09 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330834306|ref|YP_004409034.1| - 0.082 13.0 0.0 0.27 11.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|330834306|ref|YP_004409034.1| - 0.084 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_33 PF13671.1 gi|330834306|ref|YP_004409034.1| - 0.093 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|330834306|ref|YP_004409034.1| - 0.096 11.2 0.0 0.14 10.7 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RNA_helicase PF00910.17 gi|330834306|ref|YP_004409034.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.6 1 1 0 1 1 1 0 RNA helicase Pribosyltran_N PF13793.1 gi|330834307|ref|YP_004409035.1| - 3.4e-29 100.9 0.0 8.8e-28 96.3 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|330834307|ref|YP_004409035.1| - 1.8e-15 56.8 2.6 1.5e-14 53.7 0.0 3.0 4 0 0 4 4 4 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|330834307|ref|YP_004409035.1| - 1.6e-07 31.2 1.1 4.1e-06 26.6 0.3 2.1 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|330834307|ref|YP_004409035.1| - 0.0015 17.8 0.0 0.0061 15.7 0.0 1.9 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|330834307|ref|YP_004409035.1| - 0.016 14.5 0.1 0.052 12.8 0.0 1.8 2 0 0 2 2 2 0 Phosphoribosyl transferase UPF0020 PF01170.13 gi|330834308|ref|YP_004409036.1| - 4.8e-26 91.4 0.0 6.5e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|330834308|ref|YP_004409036.1| - 2e-07 31.0 0.0 3.9e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|330834308|ref|YP_004409036.1| - 6.2e-07 29.1 0.0 0.00023 20.7 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_31 PF13847.1 gi|330834308|ref|YP_004409036.1| - 2.2e-05 24.0 0.0 4.6e-05 23.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|330834308|ref|YP_004409036.1| - 0.0052 16.1 0.0 0.01 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|330834308|ref|YP_004409036.1| - 0.078 13.5 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Lactamase_B_2 PF12706.2 gi|330834309|ref|YP_004409037.1| - 8.9e-27 93.8 0.0 1.3e-26 93.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330834309|ref|YP_004409037.1| - 4.8e-13 49.1 0.1 3.8e-12 46.2 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RNA_binding PF01877.12 gi|330834310|ref|YP_004409038.1| - 5.4e-26 90.9 0.4 6.7e-26 90.6 0.3 1.1 1 0 0 1 1 1 1 RNA binding AAA_17 PF13207.1 gi|330834311|ref|YP_004409039.1| - 5.2e-08 33.7 0.7 1.1e-07 32.6 0.5 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330834311|ref|YP_004409039.1| - 8.7e-08 32.5 0.3 1.6e-07 31.7 0.2 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330834311|ref|YP_004409039.1| - 5.7e-05 23.0 0.0 0.00013 21.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|330834311|ref|YP_004409039.1| - 0.011 15.2 0.3 1.9 7.8 0.1 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase AAA_28 PF13521.1 gi|330834311|ref|YP_004409039.1| - 0.019 14.9 0.2 0.078 12.9 0.0 1.9 1 1 0 2 2 2 0 AAA domain LigT_PEase PF02834.11 gi|330834312|ref|YP_004409040.1| - 1.9e-31 107.8 0.2 5.2e-17 61.6 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|330834312|ref|YP_004409040.1| - 9.2e-15 54.6 0.0 1.2e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|330834312|ref|YP_004409040.1| - 1.3e-11 44.6 0.0 1.7e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.6 gi|330834313|ref|YP_004409041.1| - 1.1e-43 147.7 0.0 1.7e-43 147.0 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|330834313|ref|YP_004409041.1| - 7.5e-12 45.4 0.2 2.4e-11 43.7 0.1 1.9 1 0 0 1 1 1 1 Nucleotidyltransferase domain DNA_pol_B_palm PF14792.1 gi|330834313|ref|YP_004409041.1| - 0.047 13.7 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 DNA polymerase beta palm RIO1 PF01163.17 gi|330834314|ref|YP_004409042.1| - 0.0052 16.1 0.0 0.013 14.8 0.0 1.7 1 1 0 1 1 1 1 RIO1 family APH PF01636.18 gi|330834314|ref|YP_004409042.1| - 0.015 15.0 0.0 0.91 9.2 0.0 2.1 2 0 0 2 2 2 0 Phosphotransferase enzyme family TFIIS_C PF01096.13 gi|330834315|ref|YP_004409043.1| - 0.0019 17.8 2.2 1.1 8.9 0.2 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|330834315|ref|YP_004409043.1| - 0.003 17.4 1.7 0.96 9.4 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain zf-IS66 PF13005.2 gi|330834315|ref|YP_004409043.1| - 0.0031 17.4 0.2 0.19 11.7 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Ribosomal_S27e PF01667.12 gi|330834315|ref|YP_004409043.1| - 0.0059 16.1 0.8 1.2 8.7 0.0 2.1 2 0 0 2 2 2 1 Ribosomal protein S27 zinc_ribbon_5 PF13719.1 gi|330834315|ref|YP_004409043.1| - 0.0063 16.0 1.4 0.42 10.2 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330834315|ref|YP_004409043.1| - 0.0064 16.2 0.6 2 8.3 0.0 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330834315|ref|YP_004409043.1| - 0.0066 16.1 1.3 0.51 10.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Ogr_Delta PF04606.7 gi|330834315|ref|YP_004409043.1| - 0.014 15.0 0.6 0.049 13.2 0.0 1.9 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.1 gi|330834315|ref|YP_004409043.1| - 0.026 13.7 2.0 0.056 12.6 0.2 2.0 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|330834315|ref|YP_004409043.1| - 0.026 14.0 0.5 0.026 14.0 0.4 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|330834315|ref|YP_004409043.1| - 0.032 13.9 0.6 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|330834315|ref|YP_004409043.1| - 0.035 13.5 0.6 0.035 13.5 0.4 1.7 2 0 0 2 2 1 0 zinc-ribbon domain Rad50_zn_hook PF04423.9 gi|330834315|ref|YP_004409043.1| - 0.039 13.4 0.1 0.059 12.8 0.1 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2_4 PF13894.1 gi|330834315|ref|YP_004409043.1| - 0.078 13.3 1.0 3.7 8.1 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger ATPase-cat_bd PF12156.3 gi|330834315|ref|YP_004409043.1| - 0.084 13.4 0.4 0.33 11.5 0.0 1.7 1 1 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase zf-TFIIB PF13453.1 gi|330834315|ref|YP_004409043.1| - 0.13 11.4 1.3 0.37 10.0 0.1 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger FANCL_C PF11793.3 gi|330834315|ref|YP_004409043.1| - 0.14 12.1 0.8 0.18 11.7 0.6 1.4 1 1 0 1 1 1 0 FANCL C-terminal domain TF_Zn_Ribbon PF08271.7 gi|330834315|ref|YP_004409043.1| - 0.14 11.4 2.2 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-H2C2_2 PF13465.1 gi|330834315|ref|YP_004409043.1| - 0.15 12.3 3.1 1.9 8.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|330834315|ref|YP_004409043.1| - 0.21 11.3 2.4 2.4 7.9 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|330834315|ref|YP_004409043.1| - 0.36 11.2 5.7 3.1 8.3 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.1 gi|330834315|ref|YP_004409043.1| - 0.71 9.6 4.6 6.4 6.5 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Nop10p PF04135.7 gi|330834315|ref|YP_004409043.1| - 0.89 9.3 4.8 3.4 7.4 0.1 2.4 3 0 0 3 3 2 0 Nucleolar RNA-binding protein, Nop10p family zf-HIT PF04438.11 gi|330834315|ref|YP_004409043.1| - 1.4 8.6 5.2 11 5.8 0.6 2.2 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|330834315|ref|YP_004409043.1| - 1.6 8.2 4.9 3.7 7.0 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.5 gi|330834315|ref|YP_004409043.1| - 3.3 7.2 5.8 4.5 6.8 0.6 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ISL3 PF14690.1 gi|330834315|ref|YP_004409043.1| - 4.7 7.3 9.9 1.8 8.6 1.4 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TatD_DNase PF01026.16 gi|330834316|ref|YP_004409044.1| - 6.7e-31 107.4 0.0 8e-31 107.1 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase adh_short PF00106.20 gi|330834317|ref|YP_004409045.1| - 1.2e-23 83.8 0.0 5.6e-23 81.6 0.0 1.8 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|330834317|ref|YP_004409045.1| - 1.8e-17 63.9 0.0 2.8e-17 63.3 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|330834317|ref|YP_004409045.1| - 5.3e-09 35.8 0.0 8.1e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|330834317|ref|YP_004409045.1| - 4.8e-07 29.6 0.0 2.5e-05 24.0 0.0 2.2 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|330834317|ref|YP_004409045.1| - 1.8e-06 28.0 0.0 5.6e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|330834317|ref|YP_004409045.1| - 0.00078 18.4 0.0 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 3H PF02829.9 gi|330834317|ref|YP_004409045.1| - 0.014 15.4 0.1 0.19 11.7 0.1 2.2 2 0 0 2 2 2 0 3H domain FAA_hydrolase PF01557.13 gi|330834318|ref|YP_004409046.1| - 4.2e-39 134.2 0.0 5.6e-39 133.8 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|330834318|ref|YP_004409046.1| - 1.9e-10 40.9 0.0 3.7e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) HpaB_N PF11794.3 gi|330834319|ref|YP_004409047.1| - 9.3e-76 254.6 0.0 1.2e-75 254.2 0.0 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|330834319|ref|YP_004409047.1| - 2.7e-52 176.5 0.0 4.1e-52 175.9 0.0 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Glyoxalase PF00903.20 gi|330834320|ref|YP_004409048.1| - 2.6e-33 114.7 1.7 1.4e-18 67.0 0.5 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|330834320|ref|YP_004409048.1| - 4.6e-21 75.4 0.2 1.6e-09 38.3 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|330834320|ref|YP_004409048.1| - 5e-11 42.5 0.5 3.9e-06 26.8 0.2 2.7 2 2 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|330834320|ref|YP_004409048.1| - 1.4e-05 25.1 0.0 0.14 12.0 0.0 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain DUF1638 PF07796.6 gi|330834320|ref|YP_004409048.1| - 0.15 11.6 0.0 6 6.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1638) HTH_10 PF04967.7 gi|330834321|ref|YP_004409049.1| - 6.9e-17 60.7 0.5 1.4e-16 59.8 0.1 1.7 2 0 0 2 2 2 1 HTH DNA binding domain GerE PF00196.14 gi|330834321|ref|YP_004409049.1| - 0.019 14.2 0.0 0.044 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Tex_N PF09371.5 gi|330834321|ref|YP_004409049.1| - 0.071 12.4 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 Tex-like protein N-terminal domain DUF1492 PF07374.6 gi|330834321|ref|YP_004409049.1| - 0.12 12.5 0.0 0.29 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1492) Sugar_tr PF00083.19 gi|330834322|ref|YP_004409050.1| - 3.4e-41 141.2 20.5 4.9e-41 140.7 14.2 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330834322|ref|YP_004409050.1| - 1.4e-26 93.1 67.5 2.6e-24 85.6 28.6 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily PPR PF01535.15 gi|330834322|ref|YP_004409050.1| - 0.08 12.9 0.1 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 PPR repeat DUF1228 PF06779.9 gi|330834322|ref|YP_004409050.1| - 0.11 12.4 7.5 0.29 11.1 0.2 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF1228) TRI12 PF06609.8 gi|330834322|ref|YP_004409050.1| - 0.18 9.9 8.1 0.053 11.7 1.1 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) OATP PF03137.15 gi|330834322|ref|YP_004409050.1| - 2.3 6.1 12.6 0.41 8.6 1.6 2.8 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family Glyco_trans_2_3 PF13632.1 gi|330834324|ref|YP_004409052.1| - 2.4e-17 63.2 0.1 4.5e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|330834324|ref|YP_004409052.1| - 2.7e-13 50.2 0.0 4.1e-13 49.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 COX7C PF02935.11 gi|330834324|ref|YP_004409052.1| - 0.13 12.0 0.1 0.34 10.7 0.1 1.6 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIIc HMGL-like PF00682.14 gi|330834325|ref|YP_004409053.1| - 4.4e-67 226.1 2.4 6.4e-67 225.6 1.6 1.2 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.16 gi|330834325|ref|YP_004409053.1| - 3e-14 52.4 0.2 3e-14 52.4 0.2 2.8 4 0 0 4 4 4 1 AsnC family AP_endonuc_2 PF01261.19 gi|330834325|ref|YP_004409053.1| - 0.0013 18.0 0.8 0.0047 16.2 0.6 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NapD PF03927.8 gi|330834325|ref|YP_004409053.1| - 0.0024 17.6 0.4 0.011 15.6 0.3 2.2 1 0 0 1 1 1 1 NapD protein ACT_4 PF13291.1 gi|330834325|ref|YP_004409053.1| - 0.0057 16.9 4.7 0.012 15.9 0.2 3.5 3 1 1 4 4 4 1 ACT domain Glyco_hydro_97 PF10566.4 gi|330834325|ref|YP_004409053.1| - 0.013 14.6 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 PdxJ PF03740.8 gi|330834325|ref|YP_004409053.1| - 0.018 14.1 0.6 0.1 11.7 0.2 2.3 1 1 1 2 2 2 0 Pyridoxal phosphate biosynthesis protein PdxJ Radical_SAM PF04055.16 gi|330834325|ref|YP_004409053.1| - 0.018 15.2 2.3 0.35 11.0 1.3 2.7 1 1 1 2 2 2 0 Radical SAM superfamily SBDS_C PF09377.5 gi|330834325|ref|YP_004409053.1| - 0.062 12.9 0.2 0.45 10.2 0.0 2.4 2 0 0 2 2 2 0 SBDS protein C-terminal domain AA_kinase PF00696.23 gi|330834328|ref|YP_004409056.1| - 3.4e-33 115.1 0.0 4.3e-33 114.8 0.0 1.1 1 0 0 1 1 1 1 Amino acid kinase family Cren7 PF11520.3 gi|330834329|ref|YP_004409057.1| - 2.1e-28 97.6 1.7 2.3e-28 97.6 1.2 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 DUF4585 PF15232.1 gi|330834329|ref|YP_004409057.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4585) adh_short_C2 PF13561.1 gi|330834330|ref|YP_004409058.1| - 1.2e-19 71.1 0.0 2.4e-19 70.0 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|330834330|ref|YP_004409058.1| - 1.2e-16 61.0 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|330834330|ref|YP_004409058.1| - 2.4e-05 24.1 0.0 3.3e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|330834330|ref|YP_004409058.1| - 0.0018 17.9 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|330834330|ref|YP_004409058.1| - 0.062 13.3 0.0 0.11 12.4 0.0 1.4 1 1 0 1 1 1 0 NADH(P)-binding NAD_binding_2 PF03446.10 gi|330834332|ref|YP_004409060.1| - 3.4e-36 124.5 1.9 5e-36 124.0 1.3 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|330834332|ref|YP_004409060.1| - 1.3e-26 93.0 0.1 2.3e-26 92.2 0.1 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.12 gi|330834332|ref|YP_004409060.1| - 1.7e-12 47.6 0.2 4.4e-12 46.2 0.1 1.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|330834332|ref|YP_004409060.1| - 2e-05 23.7 0.3 5.7e-05 22.3 0.1 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|330834332|ref|YP_004409060.1| - 7.6e-05 22.8 0.1 0.00019 21.5 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase IlvN PF07991.7 gi|330834332|ref|YP_004409060.1| - 8.9e-05 21.9 0.1 0.00017 20.9 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|330834332|ref|YP_004409060.1| - 0.00034 21.1 0.0 0.00098 19.6 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_C PF03720.10 gi|330834332|ref|YP_004409060.1| - 0.0038 17.3 0.0 0.0072 16.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FAM177 PF14774.1 gi|330834332|ref|YP_004409060.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 FAM177 family 3HCDH_N PF02737.13 gi|330834332|ref|YP_004409060.1| - 0.089 12.4 0.1 0.2 11.3 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SRP54 PF00448.17 gi|330834334|ref|YP_004409062.1| - 7.6e-71 237.6 0.0 1.2e-70 237.0 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|330834334|ref|YP_004409062.1| - 2.5e-31 107.9 5.8 1.1e-30 105.9 1.9 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.14 gi|330834334|ref|YP_004409062.1| - 5.2e-12 45.6 2.7 1.1e-11 44.6 0.6 2.6 3 0 0 3 3 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|330834334|ref|YP_004409062.1| - 7.8e-09 35.2 0.1 3.6e-08 33.0 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|330834334|ref|YP_004409062.1| - 6.3e-06 25.9 1.0 3.5e-05 23.5 0.2 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330834334|ref|YP_004409062.1| - 3.7e-05 23.8 0.0 0.00033 20.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain cobW PF02492.14 gi|330834334|ref|YP_004409062.1| - 7.6e-05 22.2 0.2 0.00065 19.1 0.1 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_31 PF13614.1 gi|330834334|ref|YP_004409062.1| - 0.00014 21.8 0.0 0.097 12.5 0.0 2.9 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|330834334|ref|YP_004409062.1| - 0.00022 20.3 0.0 0.00049 19.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.24 gi|330834334|ref|YP_004409062.1| - 0.0012 19.0 1.4 0.026 14.7 0.1 3.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|330834334|ref|YP_004409062.1| - 0.0015 19.3 2.8 0.0099 16.6 0.8 3.0 3 1 0 3 3 1 1 AAA domain AAA_30 PF13604.1 gi|330834334|ref|YP_004409062.1| - 0.0017 17.9 0.1 0.0075 15.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330834334|ref|YP_004409062.1| - 0.0019 18.0 0.0 0.0047 16.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|330834334|ref|YP_004409062.1| - 0.0027 16.5 0.4 0.015 14.0 0.0 2.1 2 0 0 2 2 2 1 ArgK protein ATP_bind_1 PF03029.12 gi|330834334|ref|YP_004409062.1| - 0.0031 17.0 0.3 0.88 9.0 0.0 2.7 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein KaiC PF06745.8 gi|330834334|ref|YP_004409062.1| - 0.007 15.5 1.5 0.031 13.3 0.1 2.7 2 1 0 2 2 2 1 KaiC AAA_5 PF07728.9 gi|330834334|ref|YP_004409062.1| - 0.0074 16.0 0.1 0.021 14.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|330834334|ref|YP_004409062.1| - 0.0075 16.2 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330834334|ref|YP_004409062.1| - 0.0098 15.6 0.0 0.042 13.6 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain GTP_EFTU PF00009.22 gi|330834334|ref|YP_004409062.1| - 0.013 14.9 0.0 0.094 12.1 0.0 2.4 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain 6PF2K PF01591.13 gi|330834334|ref|YP_004409062.1| - 0.015 14.3 0.0 0.029 13.4 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase MMR_HSR1 PF01926.18 gi|330834334|ref|YP_004409062.1| - 0.019 14.9 0.5 0.19 11.7 0.0 2.6 2 2 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|330834334|ref|YP_004409062.1| - 0.028 13.8 0.0 0.17 11.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|330834334|ref|YP_004409062.1| - 0.042 13.2 0.2 0.088 12.2 0.2 1.9 1 1 0 1 1 1 0 AAA-like domain FeoB_N PF02421.13 gi|330834334|ref|YP_004409062.1| - 0.042 13.1 0.2 0.53 9.5 0.0 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_16 PF13191.1 gi|330834334|ref|YP_004409062.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.15 gi|330834334|ref|YP_004409062.1| - 0.084 12.5 0.0 0.25 10.9 0.0 1.8 2 0 0 2 2 1 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|330834334|ref|YP_004409062.1| - 0.23 11.7 6.6 0.16 12.3 1.1 3.1 3 1 0 3 3 1 0 AAA domain eIF-5a PF01287.15 gi|330834335|ref|YP_004409063.1| - 2e-15 56.5 1.1 3.4e-15 55.7 0.8 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|330834335|ref|YP_004409063.1| - 2.8e-05 23.9 0.0 5.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|330834335|ref|YP_004409063.1| - 0.006 16.2 1.8 0.016 14.8 0.2 2.4 2 0 0 2 2 2 1 KOW motif YcgR_2 PF12945.2 gi|330834335|ref|YP_004409063.1| - 0.1 12.4 0.3 0.71 9.7 0.0 2.2 1 1 2 3 3 3 0 Flagellar protein YcgR Elf1 PF05129.8 gi|330834336|ref|YP_004409064.1| - 0.011 15.3 0.3 0.012 15.3 0.2 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|330834336|ref|YP_004409064.1| - 0.014 15.6 1.6 0.019 15.2 1.1 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain DUF3674 PF12426.3 gi|330834336|ref|YP_004409064.1| - 0.036 13.4 0.0 0.051 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA dependent RNA polymerase tRNA-synt_1f PF01921.13 gi|330834336|ref|YP_004409064.1| - 0.043 12.4 0.2 0.046 12.4 0.1 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) zf-DNL PF05180.7 gi|330834336|ref|YP_004409064.1| - 0.056 13.1 0.3 0.059 13.0 0.2 1.1 1 0 0 1 1 1 0 DNL zinc finger ZZ PF00569.12 gi|330834336|ref|YP_004409064.1| - 0.078 12.5 1.5 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Zinc finger, ZZ type DUF951 PF06107.6 gi|330834336|ref|YP_004409064.1| - 0.11 11.9 0.1 0.11 11.9 0.0 1.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) DZR PF12773.2 gi|330834336|ref|YP_004409064.1| - 0.16 11.7 0.8 0.28 11.0 0.6 1.4 1 1 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|330834336|ref|YP_004409064.1| - 0.4 10.2 4.4 9.4 5.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-B_box PF00643.19 gi|330834336|ref|YP_004409064.1| - 0.4 10.6 4.0 1.5 8.7 2.8 1.8 1 1 0 1 1 1 0 B-box zinc finger TFIIS_C PF01096.13 gi|330834336|ref|YP_004409064.1| - 0.48 10.0 5.8 3.1 7.4 1.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.14 gi|330834336|ref|YP_004409064.1| - 0.49 10.4 5.3 3 7.9 0.7 2.0 1 1 1 2 2 2 0 Ribosomal protein L44 DUF3797 PF12677.2 gi|330834336|ref|YP_004409064.1| - 0.65 9.6 7.3 0.26 10.9 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) GCC2_GCC3 PF07699.8 gi|330834336|ref|YP_004409064.1| - 4.9 6.8 6.5 2.1 7.9 0.6 2.1 1 1 1 2 2 2 0 GCC2 and GCC3 Tnp_zf-ribbon_2 PF13842.1 gi|330834336|ref|YP_004409064.1| - 7.6 7.0 8.9 9.7 6.6 1.9 2.6 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon TP6A_N PF04406.9 gi|330834337|ref|YP_004409065.1| - 8.1e-23 79.8 0.1 1.4e-22 79.0 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.5 gi|330834337|ref|YP_004409065.1| - 0.03 14.1 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) NTF-like PF14540.1 gi|330834337|ref|YP_004409065.1| - 0.037 13.6 0.0 0.098 12.2 0.0 1.6 1 0 0 1 1 1 0 Nucleotidyltransferase-like Topo-VIb_trans PF09239.6 gi|330834338|ref|YP_004409066.1| - 2.1e-66 222.4 0.7 3.4e-66 221.7 0.1 1.7 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.1 gi|330834338|ref|YP_004409066.1| - 1e-12 47.8 0.0 3e-12 46.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|330834338|ref|YP_004409066.1| - 2.1e-12 46.7 0.0 4.3e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|330834338|ref|YP_004409066.1| - 1.4e-07 30.4 1.2 2.2e-07 29.7 0.0 1.8 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.17 gi|330834338|ref|YP_004409066.1| - 0.00021 21.7 0.5 0.00084 19.7 0.0 2.2 2 1 0 2 2 2 1 Ribosomal protein S13/S18 HI0933_like PF03486.9 gi|330834338|ref|YP_004409066.1| - 0.2 10.0 0.2 1.6 7.1 0.0 2.0 2 0 0 2 2 2 0 HI0933-like protein DS PF01916.12 gi|330834339|ref|YP_004409067.1| - 1.4e-79 267.3 0.0 1.6e-79 267.1 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase RtcB PF01139.12 gi|330834340|ref|YP_004409068.1| - 9.5e-149 495.9 0.0 1.1e-148 495.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DEAD PF00270.24 gi|330834342|ref|YP_004409070.1| - 7.9e-31 106.8 0.0 4.2e-30 104.4 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|330834342|ref|YP_004409070.1| - 4.1e-21 75.5 0.1 1.2e-19 70.7 0.1 2.8 2 1 0 2 2 2 1 DEAD/H associated Helicase_C PF00271.26 gi|330834342|ref|YP_004409070.1| - 2.1e-12 46.7 0.0 1.9e-11 43.6 0.0 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330834342|ref|YP_004409070.1| - 2.7e-07 30.6 0.0 5e-06 26.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|330834342|ref|YP_004409070.1| - 0.00027 19.8 0.0 0.0005 18.9 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|330834342|ref|YP_004409070.1| - 0.11 11.9 0.0 0.46 9.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|330834342|ref|YP_004409070.1| - 0.13 11.7 0.0 0.41 10.1 0.0 1.9 1 0 0 1 1 1 0 AAA domain Alba PF01918.16 gi|330834343|ref|YP_004409071.1| - 1.8e-10 40.2 0.3 1.8e-10 40.2 0.2 1.4 2 0 0 2 2 2 1 Alba Topoisom_bac PF01131.15 gi|330834344|ref|YP_004409072.1| - 1.1e-81 274.7 0.0 2.8e-81 273.4 0.0 1.7 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|330834344|ref|YP_004409072.1| - 5.9e-19 67.9 0.0 1.7e-18 66.4 0.0 1.8 1 0 0 1 1 1 1 Toprim domain ResIII PF04851.10 gi|330834344|ref|YP_004409072.1| - 2.7e-07 30.6 0.0 6.3e-07 29.4 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|330834344|ref|YP_004409072.1| - 1.2e-06 28.1 0.2 1.1e-05 24.9 0.1 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|330834344|ref|YP_004409072.1| - 0.00047 20.2 0.0 0.0017 18.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain Toprim_4 PF13662.1 gi|330834344|ref|YP_004409072.1| - 0.0033 17.4 0.0 0.021 14.8 0.0 2.2 2 0 0 2 2 2 1 Toprim domain DZR PF12773.2 gi|330834344|ref|YP_004409072.1| - 0.0037 17.0 3.0 0.026 14.3 0.1 2.3 2 0 0 2 2 2 1 Double zinc ribbon DUF1272 PF06906.6 gi|330834344|ref|YP_004409072.1| - 0.0082 15.9 0.8 5.2 6.9 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1272) zf-ribbon_3 PF13248.1 gi|330834344|ref|YP_004409072.1| - 0.025 13.7 0.5 0.025 13.7 0.3 2.8 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|330834344|ref|YP_004409072.1| - 0.073 12.9 0.1 0.19 11.5 0.1 1.7 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like AAA_19 PF13245.1 gi|330834344|ref|YP_004409072.1| - 0.074 12.8 0.0 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain zf-C3HC4_3 PF13920.1 gi|330834344|ref|YP_004409072.1| - 0.19 11.4 2.3 0.56 9.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.8 gi|330834344|ref|YP_004409072.1| - 0.62 9.8 3.2 0.34 10.6 0.3 1.9 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|330834344|ref|YP_004409072.1| - 0.72 9.2 3.1 23 4.4 0.0 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|330834344|ref|YP_004409072.1| - 1.1 8.8 7.1 0.96 9.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|330834344|ref|YP_004409072.1| - 4.3 7.1 5.1 2.1 8.1 0.7 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Alba PF01918.16 gi|330834345|ref|YP_004409073.1| - 3.6e-19 68.1 0.2 5.2e-19 67.6 0.1 1.3 1 0 0 1 1 1 1 Alba YjzC PF14168.1 gi|330834346|ref|YP_004409074.1| - 0.11 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 YjzC-like protein ResIII PF04851.10 gi|330834348|ref|YP_004409076.1| - 3.1e-19 69.5 0.0 1.4e-18 67.3 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330834348|ref|YP_004409076.1| - 4.2e-17 61.7 0.0 1.2e-16 60.2 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 gi|330834348|ref|YP_004409076.1| - 8.3e-10 37.9 0.0 2.6e-08 33.0 0.0 2.2 1 1 1 2 2 2 1 SNF2 family N-terminal domain DEAD PF00270.24 gi|330834348|ref|YP_004409076.1| - 4.2e-09 36.1 0.0 1.4e-08 34.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|330834348|ref|YP_004409076.1| - 0.0017 18.5 0.3 0.016 15.3 0.0 2.7 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|330834348|ref|YP_004409076.1| - 0.0065 16.2 0.1 0.025 14.3 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain DUF2075 PF09848.4 gi|330834348|ref|YP_004409076.1| - 0.0072 15.3 0.0 0.018 14.0 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Herpes_UL42 PF02282.11 gi|330834348|ref|YP_004409076.1| - 0.036 13.6 0.0 0.11 12.0 0.0 1.8 1 0 0 1 1 1 0 DNA polymerase processivity factor (UL42) RepA_N PF06970.6 gi|330834349|ref|YP_004409077.1| - 0.012 15.4 0.1 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 Replication initiator protein A (RepA) N-terminus PsiB PF06290.6 gi|330834349|ref|YP_004409077.1| - 0.12 11.7 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Plasmid SOS inhibition protein (PsiB) CutA1 PF03091.10 gi|330834350|ref|YP_004409078.1| - 4e-37 125.9 0.0 4.4e-37 125.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Glu-tRNAGln PF02686.10 gi|330834351|ref|YP_004409079.1| - 2.7e-23 81.5 0.1 3.4e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|330834352|ref|YP_004409080.1| - 7e-134 446.9 0.0 7.9e-134 446.8 0.0 1.0 1 0 0 1 1 1 1 Amidase RE_AccI PF09545.5 gi|330834352|ref|YP_004409080.1| - 0.1 11.1 0.2 0.48 8.9 0.0 1.9 2 0 0 2 2 2 0 AccI restriction endonuclease Wyosine_form PF08608.7 gi|330834353|ref|YP_004409081.1| - 3.1e-23 81.6 0.0 1.9e-22 79.1 0.0 2.2 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.16 gi|330834353|ref|YP_004409081.1| - 8.6e-16 58.5 0.0 1.3e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SF3a60_bindingd PF12108.3 gi|330834353|ref|YP_004409081.1| - 0.21 11.1 1.0 0.47 10.0 0.7 1.5 1 0 0 1 1 1 0 Splicing factor SF3a60 binding domain CTP-dep_RFKase PF01982.11 gi|330834354|ref|YP_004409082.1| - 6.3e-41 138.7 0.0 9.5e-41 138.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.2 gi|330834354|ref|YP_004409082.1| - 7e-10 38.4 0.4 1.8e-09 37.1 0.2 1.7 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|330834354|ref|YP_004409082.1| - 3.9e-08 32.9 0.3 7.8e-08 32.0 0.2 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|330834354|ref|YP_004409082.1| - 7.6e-08 31.9 1.0 1.5e-07 31.0 0.7 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330834354|ref|YP_004409082.1| - 2.7e-07 29.8 1.7 5.3e-07 28.9 1.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|330834354|ref|YP_004409082.1| - 2e-06 27.3 0.5 3.8e-06 26.4 0.4 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|330834354|ref|YP_004409082.1| - 5.8e-06 25.7 1.3 3.5e-05 23.2 0.1 2.5 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|330834354|ref|YP_004409082.1| - 2.6e-05 23.9 0.2 4.5e-05 23.1 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|330834354|ref|YP_004409082.1| - 3.5e-05 23.4 1.8 8.7e-05 22.1 0.7 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330834354|ref|YP_004409082.1| - 0.00013 22.2 0.3 0.00028 21.1 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|330834354|ref|YP_004409082.1| - 0.00025 20.6 1.7 0.00051 19.6 1.2 1.4 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.1 gi|330834354|ref|YP_004409082.1| - 0.00042 20.3 0.3 0.00082 19.4 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|330834354|ref|YP_004409082.1| - 0.0009 19.0 0.9 0.0014 18.3 0.6 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.7 gi|330834354|ref|YP_004409082.1| - 0.0011 17.2 0.2 0.0015 16.7 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Crp PF00325.15 gi|330834354|ref|YP_004409082.1| - 0.0016 17.8 0.1 0.0036 16.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HxlR PF01638.12 gi|330834354|ref|YP_004409082.1| - 0.0016 18.0 1.4 0.0028 17.2 1.0 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_12 PF08461.5 gi|330834354|ref|YP_004409082.1| - 0.0019 17.8 2.0 0.004 16.8 1.4 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_1 PF00126.22 gi|330834354|ref|YP_004409082.1| - 0.0033 17.1 0.2 0.0058 16.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|330834354|ref|YP_004409082.1| - 0.0036 16.5 0.1 0.0084 15.3 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 B-block_TFIIIC PF04182.7 gi|330834354|ref|YP_004409082.1| - 0.0045 16.7 0.2 0.0088 15.8 0.2 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_37 PF13744.1 gi|330834354|ref|YP_004409082.1| - 0.0062 16.3 0.9 0.011 15.5 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Antitoxin-MazE PF04014.13 gi|330834354|ref|YP_004409082.1| - 0.018 14.7 0.0 0.2 11.4 0.0 2.5 2 0 0 2 2 2 0 Antidote-toxin recognition MazE HTH_DeoR PF08220.7 gi|330834354|ref|YP_004409082.1| - 0.021 14.3 0.8 0.04 13.4 0.5 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1670 PF07900.6 gi|330834354|ref|YP_004409082.1| - 0.023 13.9 0.1 0.038 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) Fe_dep_repress PF01325.14 gi|330834354|ref|YP_004409082.1| - 0.025 14.5 0.4 0.068 13.1 0.3 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|330834354|ref|YP_004409082.1| - 0.029 14.0 0.0 0.062 12.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain TFIIE_alpha PF02002.12 gi|330834354|ref|YP_004409082.1| - 0.031 13.7 1.4 0.053 13.0 1.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_34 PF13601.1 gi|330834354|ref|YP_004409082.1| - 0.042 13.8 0.5 0.11 12.5 0.4 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HAP1_N PF04849.8 gi|330834354|ref|YP_004409082.1| - 0.052 12.4 2.8 0.092 11.6 1.9 1.3 1 0 0 1 1 1 0 HAP1 N-terminal conserved region HTH_AsnC-type PF13404.1 gi|330834354|ref|YP_004409082.1| - 0.065 12.7 0.0 0.14 11.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RepL PF05732.6 gi|330834354|ref|YP_004409082.1| - 0.065 12.4 0.1 0.1 11.8 0.1 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|330834354|ref|YP_004409082.1| - 0.07 13.2 0.2 0.13 12.4 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_3 PF01381.17 gi|330834354|ref|YP_004409082.1| - 0.071 12.9 0.6 0.22 11.4 0.4 1.8 1 0 0 1 1 1 0 Helix-turn-helix Mga PF05043.8 gi|330834354|ref|YP_004409082.1| - 0.11 12.7 0.9 0.22 11.8 0.2 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|330834354|ref|YP_004409082.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|330834354|ref|YP_004409082.1| - 0.14 11.7 0.1 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Trp_repressor PF01371.14 gi|330834354|ref|YP_004409082.1| - 0.16 11.8 1.6 0.16 11.8 0.3 1.6 2 0 0 2 2 1 0 Trp repressor protein DUF357 PF04010.8 gi|330834355|ref|YP_004409083.1| - 1.5e-20 72.6 0.9 3.1e-20 71.6 0.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|330834355|ref|YP_004409083.1| - 8.3e-13 48.6 0.2 4.2e-12 46.3 0.1 2.0 1 1 0 1 1 1 1 Cytidylyltransferase Toprim_3 PF13362.1 gi|330834355|ref|YP_004409083.1| - 0.0033 17.6 0.0 0.012 15.8 0.0 1.9 1 1 1 2 2 2 1 Toprim domain Sipho_Gp157 PF05565.6 gi|330834355|ref|YP_004409083.1| - 0.024 14.2 1.2 0.89 9.1 0.3 2.3 2 0 0 2 2 2 0 Siphovirus Gp157 DUF334 PF03904.8 gi|330834355|ref|YP_004409083.1| - 0.059 12.6 0.3 0.059 12.6 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF334) Ashwin PF15323.1 gi|330834355|ref|YP_004409083.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Developmental protein UPF0228 PF05727.6 gi|330834355|ref|YP_004409083.1| - 0.53 10.0 2.9 1.4 8.6 0.1 2.5 2 1 0 3 3 3 0 Uncharacterised protein family (UPF0228) RPN7 PF10602.4 gi|330834355|ref|YP_004409083.1| - 0.58 9.5 2.9 0.78 9.0 0.3 2.1 2 0 0 2 2 2 0 26S proteasome subunit RPN7 TP_methylase PF00590.15 gi|330834356|ref|YP_004409084.1| - 2.1e-22 79.8 0.0 2.4e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Metallophos PF00149.23 gi|330834357|ref|YP_004409085.1| - 8.8e-05 21.9 1.5 0.00036 19.9 1.0 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|330834357|ref|YP_004409085.1| - 0.00011 22.0 0.3 0.0002 21.2 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ERp29_N PF07912.8 gi|330834357|ref|YP_004409085.1| - 0.039 13.9 0.2 0.086 12.7 0.1 1.6 1 0 0 1 1 1 0 ERp29, N-terminal domain TFIIB PF00382.14 gi|330834358|ref|YP_004409086.1| - 2.6e-15 55.9 0.0 9.9e-11 41.2 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|330834358|ref|YP_004409086.1| - 3.2e-15 55.1 0.9 5.6e-15 54.3 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_11 PF08279.7 gi|330834358|ref|YP_004409086.1| - 0.00031 20.3 4.0 0.029 14.0 0.2 3.2 4 0 0 4 4 4 2 HTH domain Sigma70_r4 PF04545.11 gi|330834358|ref|YP_004409086.1| - 0.0021 17.3 0.0 0.0085 15.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Mga PF08280.6 gi|330834358|ref|YP_004409086.1| - 0.0024 17.5 0.2 3.1 7.6 0.1 2.4 2 0 0 2 2 2 2 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.7 gi|330834358|ref|YP_004409086.1| - 0.011 15.1 0.4 0.063 12.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_30 PF13556.1 gi|330834358|ref|YP_004409086.1| - 0.032 13.8 0.0 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain A2L_zn_ribbon PF08792.5 gi|330834358|ref|YP_004409086.1| - 0.12 11.8 0.8 0.22 11.0 0.5 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain HTH_23 PF13384.1 gi|330834358|ref|YP_004409086.1| - 0.27 10.9 1.3 0.96 9.1 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain Gar1 PF04410.9 gi|330834359|ref|YP_004409087.1| - 0.0008 18.8 0.0 0.00095 18.6 0.0 1.3 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Reo_sigmaC PF04582.7 gi|330834360|ref|YP_004409088.1| - 5.1e-07 29.1 3.9 0.002 17.3 1.0 2.1 1 1 0 2 2 2 2 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|330834360|ref|YP_004409088.1| - 0.0002 19.9 42.8 0.0002 19.9 29.7 1.6 1 1 0 1 1 1 1 AAA domain Baculo_PEP_C PF04513.7 gi|330834360|ref|YP_004409088.1| - 0.00051 19.8 11.7 0.1 12.4 3.1 3.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|330834360|ref|YP_004409088.1| - 0.0033 16.4 17.4 0.0033 16.4 12.0 3.3 1 1 2 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 Cep57_CLD_2 PF14197.1 gi|330834360|ref|YP_004409088.1| - 0.004 17.0 10.7 0.004 17.0 7.4 4.0 3 1 1 4 4 2 1 Centrosome localisation domain of PPC89 CHASE3 PF05227.8 gi|330834360|ref|YP_004409088.1| - 0.0051 16.4 6.7 0.0051 16.4 4.7 3.8 1 1 2 3 3 3 1 CHASE3 domain IncA PF04156.9 gi|330834360|ref|YP_004409088.1| - 0.0057 16.2 54.0 0.11 12.0 16.0 3.8 1 1 3 4 4 4 2 IncA protein CENP-F_leu_zip PF10473.4 gi|330834360|ref|YP_004409088.1| - 0.0064 16.3 25.2 0.0064 16.3 17.4 4.0 1 1 2 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|330834360|ref|YP_004409088.1| - 0.01 14.4 54.0 0.025 13.2 18.8 2.8 1 1 2 3 3 3 0 Spc7 kinetochore protein MCPsignal PF00015.16 gi|330834360|ref|YP_004409088.1| - 0.015 14.8 17.7 0.42 10.1 6.0 2.6 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|330834360|ref|YP_004409088.1| - 0.018 14.9 19.9 0.022 14.6 3.9 4.1 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|330834360|ref|YP_004409088.1| - 0.038 13.7 49.2 1.3 8.8 12.7 3.5 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein PilJ PF13675.1 gi|330834360|ref|YP_004409088.1| - 0.046 14.0 12.9 3.1 8.1 1.5 3.5 1 1 2 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term SlyX PF04102.7 gi|330834360|ref|YP_004409088.1| - 0.048 14.0 3.5 0.048 14.0 2.4 5.8 3 3 2 5 5 4 0 SlyX ATG16 PF08614.6 gi|330834360|ref|YP_004409088.1| - 0.051 13.4 46.0 0.082 12.7 12.9 3.8 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) APG6 PF04111.7 gi|330834360|ref|YP_004409088.1| - 0.057 12.4 49.6 2 7.3 12.1 2.7 1 1 1 2 2 2 0 Autophagy protein Apg6 Seryl_tRNA_N PF02403.17 gi|330834360|ref|YP_004409088.1| - 0.18 11.7 56.8 0.46 10.5 14.3 4.7 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF2937 PF11157.3 gi|330834360|ref|YP_004409088.1| - 0.23 10.7 3.4 0.13 11.6 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2937) DUF4164 PF13747.1 gi|330834360|ref|YP_004409088.1| - 0.3 11.2 39.7 0.22 11.6 2.4 4.9 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) DUF3584 PF12128.3 gi|330834360|ref|YP_004409088.1| - 0.36 8.0 41.0 1 6.6 28.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) DUF3450 PF11932.3 gi|330834360|ref|YP_004409088.1| - 0.44 9.7 28.9 0.096 11.9 5.4 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF972 PF06156.8 gi|330834360|ref|YP_004409088.1| - 0.44 10.9 45.8 0.49 10.7 5.4 4.7 1 1 5 6 6 6 0 Protein of unknown function (DUF972) GAS PF13851.1 gi|330834360|ref|YP_004409088.1| - 0.46 9.6 60.2 0.12 11.5 14.9 2.7 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding MscS_porin PF12795.2 gi|330834360|ref|YP_004409088.1| - 0.49 9.6 37.1 1.7 7.8 13.1 2.9 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain FUSC PF04632.7 gi|330834360|ref|YP_004409088.1| - 0.55 8.5 2.3 1.8 6.8 0.3 1.9 1 1 0 2 2 2 0 Fusaric acid resistance protein family DUF4201 PF13870.1 gi|330834360|ref|YP_004409088.1| - 0.56 9.6 56.4 1.5 8.2 11.1 3.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) Dak2 PF02734.12 gi|330834360|ref|YP_004409088.1| - 0.76 9.4 3.9 0.35 10.5 0.1 2.2 2 1 1 3 3 3 0 DAK2 domain Lectin_N PF03954.9 gi|330834360|ref|YP_004409088.1| - 0.95 8.8 9.8 0.17 11.2 1.5 2.7 2 1 0 2 2 2 0 Hepatic lectin, N-terminal domain DegS PF05384.6 gi|330834360|ref|YP_004409088.1| - 1.7 7.8 47.3 0.84 8.8 1.9 4.9 1 1 4 5 5 5 0 Sensor protein DegS DOG1 PF14144.1 gi|330834360|ref|YP_004409088.1| - 1.7 8.7 6.1 2 8.5 0.2 3.2 2 1 1 3 3 3 0 Seed dormancy control DUF1664 PF07889.7 gi|330834360|ref|YP_004409088.1| - 1.8 8.4 34.1 1.1 9.0 6.6 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF2968 PF11180.3 gi|330834360|ref|YP_004409088.1| - 2 7.7 26.9 1.9 7.8 7.6 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF2968) YPEB PF14620.1 gi|330834360|ref|YP_004409088.1| - 2.2 7.2 25.3 0.039 12.9 6.2 2.5 1 1 1 2 2 2 0 YpeB sporulation Laminin_II PF06009.7 gi|330834360|ref|YP_004409088.1| - 2.6 7.7 33.5 1.3 8.7 8.6 3.3 1 1 3 4 4 4 0 Laminin Domain II Mnd1 PF03962.10 gi|330834360|ref|YP_004409088.1| - 2.8 7.5 48.4 1.4 8.5 11.4 3.6 1 1 2 3 3 3 0 Mnd1 family TMPIT PF07851.8 gi|330834360|ref|YP_004409088.1| - 3 6.8 37.2 0.25 10.3 8.5 3.0 1 1 1 3 3 3 0 TMPIT-like protein FliD_C PF07195.7 gi|330834360|ref|YP_004409088.1| - 3.2 6.9 27.8 5.8 6.1 14.0 3.5 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus NPV_P10 PF05531.7 gi|330834360|ref|YP_004409088.1| - 4.4 7.6 17.8 5.6 7.2 4.4 4.3 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Hemerythrin PF01814.18 gi|330834360|ref|YP_004409088.1| - 4.6 7.4 10.2 4.5 7.4 0.7 3.5 1 1 3 4 4 4 0 Hemerythrin HHE cation binding domain Metal_resist PF13801.1 gi|330834360|ref|YP_004409088.1| - 4.8 7.2 7.7 61 3.6 0.0 4.0 2 2 0 3 3 3 0 Heavy-metal resistance CK2S PF15011.1 gi|330834360|ref|YP_004409088.1| - 4.8 6.9 17.8 4.2 7.1 2.9 3.3 1 1 2 3 3 3 0 Casein Kinase 2 substrate Syntaxin PF00804.20 gi|330834360|ref|YP_004409088.1| - 5.3 7.2 45.6 15 5.8 12.1 4.2 1 1 1 2 2 1 0 Syntaxin WEMBL PF05701.6 gi|330834360|ref|YP_004409088.1| - 6.1 5.1 51.0 60 1.9 35.3 2.3 1 1 0 1 1 1 0 Weak chloroplast movement under blue light DUF479 PF04336.7 gi|330834360|ref|YP_004409088.1| - 6.8 6.8 11.8 3.1 7.9 1.1 3.7 2 2 1 3 3 3 0 Protein of unknown function, DUF479 Lge1 PF11488.3 gi|330834360|ref|YP_004409088.1| - 8.1 6.7 39.5 9.7 6.4 5.0 4.9 1 1 2 3 3 3 0 Transcriptional regulatory protein LGE1 DUF373 PF04123.8 gi|330834361|ref|YP_004409089.1| - 4.4e-99 331.7 16.4 5.1e-99 331.5 11.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) SRP54 PF00448.17 gi|330834361|ref|YP_004409089.1| - 0.027 13.8 0.2 0.047 13.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Chromate_transp PF02417.10 gi|330834361|ref|YP_004409089.1| - 0.14 11.7 16.7 1 8.9 3.8 2.2 1 1 1 2 2 2 0 Chromate transporter TBP PF00352.16 gi|330834362|ref|YP_004409090.1| - 2.1e-60 200.0 0.1 9.9e-35 117.7 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|330834362|ref|YP_004409090.1| - 5e-05 23.2 0.0 0.3 11.1 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.14 gi|330834362|ref|YP_004409090.1| - 0.042 14.3 0.5 0.66 10.4 0.3 2.4 1 1 1 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Spore_YhaL PF14147.1 gi|330834362|ref|YP_004409090.1| - 0.11 11.9 0.5 3.1 7.3 0.0 2.8 3 0 0 3 3 3 0 Sporulation protein YhaL Viral_cys_rich PF08008.7 gi|330834363|ref|YP_004409091.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Viral cysteine rich RNA_pol_Rpc34 PF05158.7 gi|330834364|ref|YP_004409092.1| - 4.1e-11 42.6 8.0 4.1e-06 26.2 2.2 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit B-block_TFIIIC PF04182.7 gi|330834364|ref|YP_004409092.1| - 3.9e-06 26.6 0.5 5.5e-06 26.1 0.3 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR PF01047.17 gi|330834364|ref|YP_004409092.1| - 4.4e-06 26.3 0.7 8.7e-06 25.3 0.3 1.7 1 1 1 2 2 2 1 MarR family HTH_24 PF13412.1 gi|330834364|ref|YP_004409092.1| - 6.7e-06 25.3 0.4 1.5e-05 24.2 0.3 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|330834364|ref|YP_004409092.1| - 0.001 18.5 0.9 0.0013 18.2 0.6 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_3 PF01381.17 gi|330834364|ref|YP_004409092.1| - 0.0021 17.8 0.9 0.0042 16.9 0.3 1.7 1 1 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|330834364|ref|YP_004409092.1| - 0.0026 17.4 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family RPA_C PF08784.6 gi|330834364|ref|YP_004409092.1| - 0.0063 16.8 0.1 0.012 16.0 0.1 1.4 1 0 0 1 1 1 1 Replication protein A C terminal CENP-B_N PF04218.8 gi|330834364|ref|YP_004409092.1| - 0.0089 15.4 0.2 0.017 14.5 0.1 1.6 1 1 0 1 1 1 1 CENP-B N-terminal DNA-binding domain HTH_11 PF08279.7 gi|330834364|ref|YP_004409092.1| - 0.012 15.1 1.0 0.016 14.8 0.2 1.6 2 0 0 2 2 2 0 HTH domain HTH_38 PF13936.1 gi|330834364|ref|YP_004409092.1| - 0.02 14.4 0.4 0.04 13.4 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|330834364|ref|YP_004409092.1| - 0.044 13.9 1.2 0.11 12.7 0.2 1.9 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain Integrase_1 PF12835.2 gi|330834364|ref|YP_004409092.1| - 0.049 13.3 0.2 0.058 13.1 0.2 1.2 1 0 0 1 1 1 0 Integrase TrmB PF01978.14 gi|330834364|ref|YP_004409092.1| - 0.051 13.2 0.5 0.074 12.7 0.4 1.3 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|330834364|ref|YP_004409092.1| - 0.055 13.4 1.1 0.084 12.8 0.8 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_23 PF13384.1 gi|330834364|ref|YP_004409092.1| - 0.095 12.3 0.1 0.27 10.9 0.0 1.8 1 1 1 2 2 2 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|330834364|ref|YP_004409092.1| - 0.12 12.1 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rio2_N PF09202.6 gi|330834364|ref|YP_004409092.1| - 0.14 12.2 0.2 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 Rio2, N-terminal DUF771 PF05595.6 gi|330834364|ref|YP_004409092.1| - 0.19 11.6 1.1 0.27 11.1 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF771) TRM PF02005.11 gi|330834365|ref|YP_004409093.1| - 3.2e-94 315.9 0.0 3.5e-94 315.8 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.11 gi|330834365|ref|YP_004409093.1| - 3e-06 26.9 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.1 gi|330834365|ref|YP_004409093.1| - 3.5e-05 23.4 0.0 5.3e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|330834365|ref|YP_004409093.1| - 0.0047 16.4 0.0 0.008 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase HypA PF01155.14 gi|330834365|ref|YP_004409093.1| - 0.015 14.9 0.4 0.03 14.0 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|330834365|ref|YP_004409093.1| - 0.079 12.7 2.9 0.15 11.8 2.0 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|330834365|ref|YP_004409093.1| - 0.17 11.8 4.2 0.38 10.7 2.9 1.6 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|330834365|ref|YP_004409093.1| - 2.9 7.1 7.0 6.8 6.0 4.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain HTH_3 PF01381.17 gi|330834366|ref|YP_004409094.1| - 3.2e-13 49.2 0.1 3e-12 46.2 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|330834366|ref|YP_004409094.1| - 1.1e-09 38.2 1.2 4.3e-09 36.2 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|330834366|ref|YP_004409094.1| - 5.7e-07 29.6 0.0 4.9e-06 26.6 0.0 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain MerR PF00376.18 gi|330834366|ref|YP_004409094.1| - 0.0027 17.2 0.0 0.008 15.7 0.0 1.9 1 0 0 1 1 1 1 MerR family regulatory protein HTH_26 PF13443.1 gi|330834366|ref|YP_004409094.1| - 0.0052 16.9 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MerR_1 PF13411.1 gi|330834366|ref|YP_004409094.1| - 0.0056 16.4 0.0 0.021 14.5 0.0 2.0 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_17 PF12728.2 gi|330834366|ref|YP_004409094.1| - 0.044 14.0 0.5 0.19 12.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain RNase_PH_C PF03725.10 gi|330834366|ref|YP_004409094.1| - 0.054 13.4 0.2 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 3' exoribonuclease family, domain 2 ApbA_C PF08546.6 gi|330834366|ref|YP_004409094.1| - 0.12 12.4 0.1 8.6 6.3 0.0 2.7 3 0 0 3 3 3 0 Ketopantoate reductase PanE/ApbA C terminal DUF61 PF01886.11 gi|330834367|ref|YP_004409095.1| - 1.1e-27 96.4 0.1 1.3e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.12 gi|330834368|ref|YP_004409096.1| - 1.2e-95 318.8 0.0 1.3e-95 318.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|330834368|ref|YP_004409096.1| - 0.0013 18.2 0.0 0.0024 17.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|330834368|ref|YP_004409096.1| - 0.077 12.5 0.0 0.17 11.4 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Tcp10_C PF07202.8 gi|330834368|ref|YP_004409096.1| - 0.086 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 T-complex protein 10 C-terminus Nop PF01798.13 gi|330834369|ref|YP_004409097.1| - 9e-53 177.6 0.1 1.5e-52 176.9 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|330834369|ref|YP_004409097.1| - 1.3e-23 82.5 0.5 3.6e-23 81.1 0.4 1.8 1 0 0 1 1 1 1 NOSIC (NUC001) domain YIEGIA PF14045.1 gi|330834369|ref|YP_004409097.1| - 0.018 13.6 0.1 0.073 11.6 0.0 1.8 2 0 0 2 2 2 0 YIEGIA protein HHH_5 PF14520.1 gi|330834369|ref|YP_004409097.1| - 0.054 13.6 0.3 4 7.6 0.1 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain Ribosomal_S30 PF04758.9 gi|330834370|ref|YP_004409098.1| - 8.1e-13 47.9 5.9 1e-12 47.6 4.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Pilt PF15453.1 gi|330834370|ref|YP_004409098.1| - 0.17 11.5 2.3 0.17 11.5 1.6 1.1 1 0 0 1 1 1 0 Protein incorporated later into Tight Junctions Sas10 PF09368.5 gi|330834370|ref|YP_004409098.1| - 0.32 11.1 5.7 0.42 10.8 4.0 1.3 1 1 0 1 1 1 0 Sas10 C-terminal domain Asparaginase PF00710.15 gi|330834371|ref|YP_004409099.1| - 2.9e-91 305.6 0.0 3.5e-91 305.3 0.0 1.0 1 0 0 1 1 1 1 Asparaginase GatB_N PF02934.10 gi|330834372|ref|YP_004409100.1| - 8.9e-74 247.9 0.0 1.3e-73 247.4 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|330834372|ref|YP_004409100.1| - 9.9e-27 93.4 1.6 2.1e-26 92.3 1.1 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|330834372|ref|YP_004409100.1| - 1.2e-14 54.2 0.1 5.5e-14 52.0 0.0 2.3 2 0 0 2 2 2 1 GAD domain YqeY PF09424.5 gi|330834372|ref|YP_004409100.1| - 4.5e-06 26.5 4.2 1.3e-05 25.0 1.4 2.4 2 0 0 2 2 2 1 Yqey-like protein Ste50p-SAM PF09235.5 gi|330834372|ref|YP_004409100.1| - 0.035 14.1 0.3 3.2 7.8 0.1 3.3 3 0 0 3 3 3 0 Ste50p, sterile alpha motif tRNA_synt_1c_R1 PF04558.10 gi|330834372|ref|YP_004409100.1| - 0.092 12.2 2.9 0.75 9.3 0.3 2.8 2 1 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 HTH_3 PF01381.17 gi|330834374|ref|YP_004409102.1| - 0.016 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Myb_DNA-binding PF00249.26 gi|330834374|ref|YP_004409102.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 Myb-like DNA-binding domain Ribonuc_red_lgC PF02867.10 gi|330834375|ref|YP_004409103.1| - 1.2e-175 585.1 0.0 1.5e-175 584.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|330834375|ref|YP_004409103.1| - 3.6e-28 97.1 0.1 1.2e-27 95.4 0.1 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|330834375|ref|YP_004409103.1| - 1.1e-09 38.5 1.6 2.9e-09 37.2 0.4 2.4 2 0 0 2 2 2 1 ATP cone domain tRNA-synt_1d PF00750.14 gi|330834376|ref|YP_004409104.1| - 6.1e-45 153.5 0.0 1.9e-21 76.3 0.0 2.1 1 1 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|330834376|ref|YP_004409104.1| - 8.1e-30 103.2 0.1 2e-29 101.9 0.1 1.7 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1g PF09334.6 gi|330834376|ref|YP_004409104.1| - 0.00021 20.1 0.1 0.0082 14.8 0.0 2.5 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|330834376|ref|YP_004409104.1| - 0.0085 14.1 0.1 0.22 9.4 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) Arg_tRNA_synt_N PF03485.11 gi|330834376|ref|YP_004409104.1| - 0.0094 16.4 0.1 0.19 12.2 0.0 3.0 2 1 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|330834376|ref|YP_004409104.1| - 0.09 11.4 1.1 2 7.0 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (K) RE_AccI PF09545.5 gi|330834377|ref|YP_004409105.1| - 0.073 11.6 0.0 0.073 11.6 0.0 1.0 1 0 0 1 1 1 0 AccI restriction endonuclease Prot_inhib_II PF02428.10 gi|330834378|ref|YP_004409106.1| - 0.039 14.0 1.5 0.065 13.3 0.2 2.0 2 0 0 2 2 2 0 Potato type II proteinase inhibitor family Clathrin PF00637.15 gi|330834379|ref|YP_004409107.1| - 0.038 13.5 0.1 0.048 13.2 0.1 1.1 1 0 0 1 1 1 0 Region in Clathrin and VPS DUF763 PF05559.6 gi|330834379|ref|YP_004409107.1| - 0.071 12.0 0.2 0.074 11.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF763) Cpn60_TCP1 PF00118.19 gi|330834381|ref|YP_004409109.1| - 8.4e-162 539.1 12.6 9.5e-162 538.9 8.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF2111 PF09884.4 gi|330834381|ref|YP_004409109.1| - 0.044 13.6 0.0 0.14 11.9 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) GLF PF03275.8 gi|330834381|ref|YP_004409109.1| - 0.12 11.8 0.1 0.21 11.0 0.1 1.3 1 0 0 1 1 1 0 UDP-galactopyranose mutase zf-FPG_IleRS PF06827.9 gi|330834382|ref|YP_004409110.1| - 0.35 10.5 4.6 6.8 6.4 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|330834382|ref|YP_004409110.1| - 1.7 8.0 4.3 9.7 5.6 3.0 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding DUF4200 PF13863.1 gi|330834383|ref|YP_004409111.1| - 0.49 10.3 5.3 0.16 11.9 2.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) HTH_45 PF14947.1 gi|330834384|ref|YP_004409112.1| - 0.0034 17.1 0.0 0.0089 15.8 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.14 gi|330834384|ref|YP_004409112.1| - 0.085 12.5 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB NAD_kinase PF01513.16 gi|330834385|ref|YP_004409113.1| - 4.6e-59 199.5 0.0 5.1e-59 199.3 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|330834385|ref|YP_004409113.1| - 0.03 13.7 0.2 0.17 11.3 0.0 2.2 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain HTH_45 PF14947.1 gi|330834386|ref|YP_004409114.1| - 0.0011 18.6 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4093 PF13331.1 gi|330834386|ref|YP_004409114.1| - 0.0019 18.3 0.0 0.0035 17.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4093) DUF4443 PF14544.1 gi|330834386|ref|YP_004409114.1| - 0.0033 17.3 0.0 0.0051 16.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4443) PaaX PF07848.7 gi|330834386|ref|YP_004409114.1| - 0.0043 17.0 0.2 0.011 15.6 0.1 1.7 1 0 0 1 1 1 1 PaaX-like protein Fe_dep_repress PF01325.14 gi|330834386|ref|YP_004409114.1| - 0.013 15.4 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S19e PF01090.14 gi|330834386|ref|YP_004409114.1| - 0.015 14.6 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e MarR PF01047.17 gi|330834386|ref|YP_004409114.1| - 0.045 13.4 0.1 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|330834386|ref|YP_004409114.1| - 0.054 13.8 0.1 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330834386|ref|YP_004409114.1| - 0.075 12.4 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Topoisom_bac PF01131.15 gi|330834386|ref|YP_004409114.1| - 0.075 11.8 0.0 0.089 11.5 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase HTH_12 PF08461.5 gi|330834386|ref|YP_004409114.1| - 0.086 12.5 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain OTCace PF00185.19 gi|330834387|ref|YP_004409115.1| - 8.2e-46 155.7 0.0 1.3e-45 155.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|330834387|ref|YP_004409115.1| - 1.2e-43 148.1 0.0 1.7e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ribosomal_S21 PF01165.15 gi|330834387|ref|YP_004409115.1| - 0.021 14.2 0.2 0.45 9.9 0.0 2.6 2 0 0 2 2 2 0 Ribosomal protein S21 DUF650 PF04894.7 gi|330834388|ref|YP_004409116.1| - 6.5e-93 311.1 0.1 8.1e-93 310.8 0.1 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|330834388|ref|YP_004409116.1| - 3e-31 107.3 0.0 5.1e-31 106.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) WSN PF02206.13 gi|330834388|ref|YP_004409116.1| - 0.096 12.4 0.0 3.5 7.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function PHP_C PF13263.1 gi|330834389|ref|YP_004409117.1| - 6.7e-12 44.7 0.0 1.2e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|330834389|ref|YP_004409117.1| - 4.8e-09 36.2 0.0 9.6e-09 35.2 0.0 1.7 1 1 0 1 1 1 1 PHP domain Semialdhyde_dh PF01118.19 gi|330834390|ref|YP_004409118.1| - 3.4e-31 108.0 0.0 5.1e-31 107.4 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|330834390|ref|YP_004409118.1| - 1.8e-26 93.1 0.0 2.8e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain NAD_binding_10 PF13460.1 gi|330834390|ref|YP_004409118.1| - 0.0097 15.9 0.0 0.021 14.8 0.0 1.5 1 1 0 1 1 1 1 NADH(P)-binding DapB_N PF01113.15 gi|330834390|ref|YP_004409118.1| - 0.044 13.7 0.0 0.094 12.6 0.0 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA PF01408.17 gi|330834390|ref|YP_004409118.1| - 0.057 13.9 0.0 0.1 13.1 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AA_kinase PF00696.23 gi|330834391|ref|YP_004409119.1| - 1.7e-45 155.4 0.2 2.9e-45 154.6 0.1 1.4 1 0 0 1 1 1 1 Amino acid kinase family ACT PF01842.20 gi|330834391|ref|YP_004409119.1| - 0.00063 19.1 0.4 0.0034 16.8 0.1 2.4 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|330834391|ref|YP_004409119.1| - 0.0021 17.5 2.4 0.0045 16.4 0.1 2.8 3 0 0 3 3 3 1 ACT domain T2SM PF04612.7 gi|330834391|ref|YP_004409119.1| - 0.061 13.1 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M PALP PF00291.20 gi|330834392|ref|YP_004409120.1| - 1.3e-70 238.0 2.8 1.5e-70 237.8 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.11 gi|330834392|ref|YP_004409120.1| - 0.011 15.2 0.7 0.5 9.9 0.1 2.4 2 0 0 2 2 2 0 Pyruvate kinase, alpha/beta domain UbiD PF01977.11 gi|330834393|ref|YP_004409121.1| - 8.1e-133 442.8 0.0 9.3e-133 442.6 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Snf7 PF03357.16 gi|330834395|ref|YP_004409123.1| - 2.4e-07 30.2 4.1 3.5e-07 29.7 2.8 1.3 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.4 gi|330834395|ref|YP_004409123.1| - 0.0038 17.0 2.4 0.0097 15.7 0.7 2.2 1 1 1 2 2 2 1 Tumour suppressor protein DivIVA PF05103.8 gi|330834395|ref|YP_004409123.1| - 0.0095 15.9 8.0 0.1 12.6 1.9 2.2 1 1 1 2 2 2 2 DivIVA protein PPDK_N PF01326.14 gi|330834396|ref|YP_004409124.1| - 1.5e-104 349.6 0.0 7.7e-104 347.2 0.0 1.8 2 0 0 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|330834396|ref|YP_004409124.1| - 3.7e-79 265.6 0.0 5.5e-79 265.0 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|330834396|ref|YP_004409124.1| - 3.4e-29 100.2 1.2 7.7e-29 99.0 0.9 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain zf-SAP30 PF13866.1 gi|330834396|ref|YP_004409124.1| - 0.22 11.1 0.6 0.57 9.8 0.4 1.6 1 0 0 1 1 1 0 SAP30 zinc-finger NAD_binding_5 PF07994.7 gi|330834397|ref|YP_004409125.1| - 2.4e-48 165.1 0.0 6.4e-48 163.7 0.0 1.6 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|330834397|ref|YP_004409125.1| - 9e-30 102.7 0.0 1.4e-29 102.1 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Acylphosphatase PF00708.13 gi|330834398|ref|YP_004409126.1| - 2.8e-27 94.6 0.0 3.3e-27 94.4 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase PALP PF00291.20 gi|330834400|ref|YP_004409128.1| - 2.4e-38 132.1 0.0 3.1e-38 131.7 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.15 gi|330834401|ref|YP_004409129.1| - 8.4e-35 119.5 0.0 1e-34 119.2 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.16 gi|330834401|ref|YP_004409129.1| - 2.2e-05 23.8 0.2 0.00013 21.3 0.1 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.12 gi|330834401|ref|YP_004409129.1| - 0.0033 16.7 0.0 0.0069 15.6 0.0 1.6 1 0 0 1 1 1 1 PcrB family Ribul_P_3_epim PF00834.14 gi|330834401|ref|YP_004409129.1| - 0.0077 15.3 0.0 0.012 14.7 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family TMP-TENI PF02581.12 gi|330834401|ref|YP_004409129.1| - 0.014 14.5 0.0 0.032 13.3 0.0 1.6 1 0 0 1 1 1 0 Thiamine monophosphate synthase/TENI FMN_dh PF01070.13 gi|330834401|ref|YP_004409129.1| - 0.019 13.8 0.1 0.068 11.9 0.1 1.8 3 0 0 3 3 3 0 FMN-dependent dehydrogenase NMO PF03060.10 gi|330834401|ref|YP_004409129.1| - 0.049 12.7 0.2 0.1 11.7 0.1 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase Glycos_transf_3 PF00591.16 gi|330834402|ref|YP_004409130.1| - 2.5e-70 236.7 0.0 3.4e-70 236.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|330834402|ref|YP_004409130.1| - 1.3e-22 79.1 0.0 2.5e-22 78.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain DUF2092 PF09865.4 gi|330834402|ref|YP_004409130.1| - 0.16 10.9 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2092) PRAI PF00697.17 gi|330834403|ref|YP_004409131.1| - 2e-20 73.1 0.0 2.3e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.13 gi|330834404|ref|YP_004409132.1| - 1.1e-93 313.3 0.0 1.3e-93 313.0 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|330834404|ref|YP_004409132.1| - 1.6e-19 70.2 0.0 3.4e-19 69.2 0.0 1.6 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|330834405|ref|YP_004409133.1| - 1.6e-50 171.2 0.0 1.7e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330834405|ref|YP_004409133.1| - 8.1e-10 38.5 0.0 1.4e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.16 gi|330834406|ref|YP_004409134.1| - 3e-71 239.4 0.0 3.4e-71 239.2 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|330834406|ref|YP_004409134.1| - 1.2e-06 27.9 0.1 0.00017 20.9 0.0 2.2 1 1 1 2 2 2 2 Histidine biosynthesis protein NMO PF03060.10 gi|330834406|ref|YP_004409134.1| - 0.00037 19.7 0.0 0.43 9.6 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase NanE PF04131.9 gi|330834406|ref|YP_004409134.1| - 0.0049 15.8 0.0 0.019 13.9 0.0 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.9 gi|330834406|ref|YP_004409134.1| - 0.016 14.3 0.0 0.49 9.4 0.0 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Aminotran_1_2 PF00155.16 gi|330834407|ref|YP_004409135.1| - 4e-69 233.2 0.0 4.6e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|330834407|ref|YP_004409135.1| - 6.8e-07 28.6 0.0 9.4e-07 28.1 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|330834407|ref|YP_004409135.1| - 0.027 12.7 0.0 0.04 12.1 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme tRNA-synt_1 PF00133.17 gi|330834408|ref|YP_004409136.1| - 9.1e-123 410.3 0.0 5.4e-122 407.7 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330834408|ref|YP_004409136.1| - 2.1e-29 102.2 3.2 2.2e-29 102.1 1.0 1.9 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|330834408|ref|YP_004409136.1| - 7.4e-27 94.0 0.0 1.1e-11 44.0 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1d PF00750.14 gi|330834408|ref|YP_004409136.1| - 5.8e-05 22.0 0.0 0.012 14.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1_2 PF13603.1 gi|330834408|ref|YP_004409136.1| - 0.00021 20.6 0.0 0.0081 15.4 0.0 2.8 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|330834408|ref|YP_004409136.1| - 0.00038 19.6 0.0 0.063 12.3 0.0 2.6 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain NAD_binding_8 PF13450.1 gi|330834409|ref|YP_004409137.1| - 7.9e-05 22.6 0.0 0.00015 21.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|330834409|ref|YP_004409137.1| - 0.0071 15.7 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|330834409|ref|YP_004409137.1| - 0.01 14.7 0.1 0.02 13.8 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|330834409|ref|YP_004409137.1| - 0.019 14.5 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|330834409|ref|YP_004409137.1| - 0.029 14.1 0.0 0.079 12.6 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|330834409|ref|YP_004409137.1| - 0.035 14.5 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase zf-H2C2_2 PF13465.1 gi|330834413|ref|YP_004409141.1| - 0.0011 19.1 10.3 0.29 11.5 1.1 3.2 3 0 0 3 3 3 1 Zinc-finger double domain Prok-RING_1 PF14446.1 gi|330834413|ref|YP_004409141.1| - 0.0035 17.0 6.8 0.023 14.4 1.9 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zinc_ribbon_5 PF13719.1 gi|330834413|ref|YP_004409141.1| - 0.046 13.3 13.7 0.55 9.8 5.9 2.6 2 1 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|330834413|ref|YP_004409141.1| - 0.046 13.5 7.5 0.53 10.1 5.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|330834413|ref|YP_004409141.1| - 0.052 13.2 14.3 0.45 10.2 6.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Gin PF10764.4 gi|330834413|ref|YP_004409141.1| - 0.13 11.9 9.5 0.18 11.5 4.4 2.4 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin DUF1272 PF06906.6 gi|330834413|ref|YP_004409141.1| - 0.13 12.1 7.3 0.47 10.3 5.1 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C4_Topoisom PF01396.14 gi|330834413|ref|YP_004409141.1| - 0.17 11.4 8.6 1.1 8.7 0.3 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|330834413|ref|YP_004409141.1| - 0.22 11.3 8.0 8.4 6.2 5.6 2.4 1 1 0 1 1 1 0 zinc-ribbons zf-TFIIB PF13453.1 gi|330834413|ref|YP_004409141.1| - 0.34 10.1 7.1 2.3 7.5 0.1 2.9 3 0 0 3 3 3 0 Transcription factor zinc-finger zf-RING_4 PF14570.1 gi|330834413|ref|YP_004409141.1| - 0.43 10.2 8.4 1.1 8.8 1.3 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Zn_Tnp_IS1 PF03811.8 gi|330834413|ref|YP_004409141.1| - 0.43 10.1 9.5 8.7 5.9 0.5 3.6 2 1 0 3 3 3 0 InsA N-terminal domain zf-RING_3 PF14369.1 gi|330834413|ref|YP_004409141.1| - 0.45 10.5 8.4 0.82 9.7 0.5 2.5 2 1 0 2 2 2 0 zinc-finger DNA_ligase_ZBD PF03119.11 gi|330834413|ref|YP_004409141.1| - 0.45 10.2 0.4 0.45 10.2 0.3 2.7 3 1 1 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF951 PF06107.6 gi|330834413|ref|YP_004409141.1| - 0.62 9.6 0.2 0.62 9.6 0.1 2.4 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF951) zf-C3HC4_3 PF13920.1 gi|330834413|ref|YP_004409141.1| - 0.64 9.7 12.1 69 3.2 0.3 2.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_2 PF13639.1 gi|330834413|ref|YP_004409141.1| - 0.66 9.8 7.1 2 8.3 4.9 1.8 1 1 0 1 1 1 0 Ring finger domain zf-C2HC5 PF06221.8 gi|330834413|ref|YP_004409141.1| - 0.73 9.6 7.3 1.4 8.7 2.2 2.6 1 1 2 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-C2H2_4 PF13894.1 gi|330834413|ref|YP_004409141.1| - 0.81 10.1 13.1 6.5 7.3 1.8 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|330834413|ref|YP_004409141.1| - 0.84 10.1 13.0 3.6 8.1 1.8 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-FCS PF06467.9 gi|330834413|ref|YP_004409141.1| - 0.99 9.1 8.2 2 8.1 0.0 2.6 2 1 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif ZZ PF00569.12 gi|330834413|ref|YP_004409141.1| - 1 8.9 6.2 0.24 10.9 1.5 2.0 2 1 0 2 2 2 0 Zinc finger, ZZ type HypA PF01155.14 gi|330834413|ref|YP_004409141.1| - 1 9.0 5.7 7.3 6.3 4.0 1.9 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_ribbon_recom PF13408.1 gi|330834413|ref|YP_004409141.1| - 1.2 9.4 8.7 2 8.7 6.0 1.3 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-B_box PF00643.19 gi|330834413|ref|YP_004409141.1| - 1.6 8.6 10.9 7.9 6.4 5.4 2.7 2 1 0 2 2 2 0 B-box zinc finger C1_1 PF00130.17 gi|330834413|ref|YP_004409141.1| - 1.7 8.4 6.8 1.1 9.0 1.6 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DiS_P_DiS PF06750.8 gi|330834413|ref|YP_004409141.1| - 1.7 8.4 5.3 23 4.8 0.0 2.9 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-Di19 PF05605.7 gi|330834413|ref|YP_004409141.1| - 1.8 8.7 11.2 5.4 7.2 0.3 3.2 2 1 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zf-HIT PF04438.11 gi|330834413|ref|YP_004409141.1| - 2 8.1 17.1 21 4.8 7.7 3.1 2 1 0 2 2 2 0 HIT zinc finger FANCL_C PF11793.3 gi|330834413|ref|YP_004409141.1| - 2.1 8.3 11.1 0.96 9.4 0.1 2.8 2 1 0 2 2 2 0 FANCL C-terminal domain Zn-ribbon_8 PF09723.5 gi|330834413|ref|YP_004409141.1| - 2.4 8.1 10.6 4.7 7.2 5.5 2.4 2 1 0 2 2 2 0 Zinc ribbon domain zf-AN1 PF01428.11 gi|330834413|ref|YP_004409141.1| - 2.6 7.9 10.3 18 5.3 3.3 2.7 1 1 2 3 3 3 0 AN1-like Zinc finger zf-ribbon_3 PF13248.1 gi|330834413|ref|YP_004409141.1| - 2.7 7.3 12.5 2.3 7.5 0.3 3.2 3 1 0 3 3 3 0 zinc-ribbon domain DUF2072 PF09845.4 gi|330834413|ref|YP_004409141.1| - 2.8 7.8 6.3 3.7 7.5 4.4 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) DUF1062 PF06353.7 gi|330834413|ref|YP_004409141.1| - 2.9 8.1 5.3 12 6.1 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1062) DUF4451 PF14616.1 gi|330834413|ref|YP_004409141.1| - 3 7.6 8.2 6 6.6 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4451) zf-CHY PF05495.7 gi|330834413|ref|YP_004409141.1| - 3.1 8.0 8.9 74 3.6 6.2 2.3 1 1 0 1 1 1 0 CHY zinc finger zf-BED PF02892.10 gi|330834413|ref|YP_004409141.1| - 3.4 7.4 13.9 4.8 7.0 0.1 3.1 1 1 2 3 3 3 0 BED zinc finger zf-HC5HC2H PF13771.1 gi|330834413|ref|YP_004409141.1| - 3.7 7.7 7.0 2 8.6 1.9 1.9 1 1 1 2 2 2 0 PHD-like zinc-binding domain Ribosomal_S27e PF01667.12 gi|330834413|ref|YP_004409141.1| - 3.9 7.0 10.5 10 5.7 0.1 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 Sgf11 PF08209.6 gi|330834413|ref|YP_004409141.1| - 4 6.8 7.6 15 5.0 0.2 3.0 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) TFIIS_C PF01096.13 gi|330834413|ref|YP_004409141.1| - 4.3 7.0 10.9 1 9.0 0.8 3.0 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|330834413|ref|YP_004409141.1| - 4.8 6.8 15.6 1.7 8.2 0.3 3.1 3 1 0 3 3 3 0 zinc-ribbon domain DUF329 PF03884.9 gi|330834413|ref|YP_004409141.1| - 5 6.7 12.2 9.4 5.8 1.1 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF329) zf-LITAF-like PF10601.4 gi|330834413|ref|YP_004409141.1| - 5.3 6.9 10.0 14 5.6 0.3 2.9 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zf-C2HC_2 PF13913.1 gi|330834413|ref|YP_004409141.1| - 5.8 6.7 14.4 2.1 8.1 0.3 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Zn_Tnp_IS1595 PF12760.2 gi|330834413|ref|YP_004409141.1| - 6.4 6.6 12.3 3.7 7.4 3.6 2.7 1 1 2 3 3 3 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330834413|ref|YP_004409141.1| - 6.6 6.4 7.1 2.6 7.7 1.5 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|330834413|ref|YP_004409141.1| - 6.9 6.0 11.2 11 5.4 0.3 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding CpXC PF14353.1 gi|330834413|ref|YP_004409141.1| - 8.4 6.3 9.7 7.8 6.4 2.6 2.7 1 1 1 2 2 2 0 CpXC protein zf-RING_5 PF14634.1 gi|330834413|ref|YP_004409141.1| - 9.7 6.0 10.8 29 4.4 0.7 3.0 2 1 1 3 3 3 0 zinc-RING finger domain HhH-GPD PF00730.20 gi|330834415|ref|YP_004409143.1| - 0.032 14.5 0.0 0.045 14.0 0.0 1.4 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein 2-Hacid_dh_C PF02826.14 gi|330834416|ref|YP_004409144.1| - 6.9e-47 158.8 0.3 1.1e-46 158.2 0.2 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|330834416|ref|YP_004409144.1| - 6.6e-36 122.7 0.8 8.5e-36 122.3 0.5 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|330834416|ref|YP_004409144.1| - 1.4e-05 24.9 1.6 1.4e-05 24.9 1.1 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|330834416|ref|YP_004409144.1| - 4.9e-05 23.2 2.4 4.9e-05 23.2 1.7 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.7 gi|330834416|ref|YP_004409144.1| - 0.025 13.9 0.3 0.055 12.8 0.2 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NMT1 PF09084.6 gi|330834416|ref|YP_004409144.1| - 0.035 13.6 1.0 0.78 9.2 0.1 2.4 2 0 0 2 2 2 0 NMT1/THI5 like Aminotran_5 PF00266.14 gi|330834417|ref|YP_004409145.1| - 9.6e-24 83.7 0.0 1.3e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|330834417|ref|YP_004409145.1| - 1.5e-06 26.8 0.0 2e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|330834417|ref|YP_004409145.1| - 0.00046 19.2 0.0 0.00064 18.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|330834417|ref|YP_004409145.1| - 0.0015 17.7 0.0 0.0023 17.1 0.0 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Nif11 PF07862.6 gi|330834417|ref|YP_004409145.1| - 0.14 12.1 0.0 20 5.2 0.0 2.5 2 0 0 2 2 2 0 Nitrogen fixation protein of unknown function AAA PF00004.24 gi|330834419|ref|YP_004409147.1| - 2.5e-40 137.7 0.0 2e-39 134.8 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|330834419|ref|YP_004409147.1| - 1.5e-15 56.8 2.6 2.8e-15 55.9 1.0 2.0 2 0 0 2 2 2 1 MIT (microtubule interacting and transport) domain AAA_2 PF07724.9 gi|330834419|ref|YP_004409147.1| - 4.2e-09 36.5 0.0 1.1e-08 35.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|330834419|ref|YP_004409147.1| - 1.5e-08 34.0 0.0 6.7e-08 31.8 0.0 1.9 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|330834419|ref|YP_004409147.1| - 3e-08 33.8 0.0 1.9e-06 28.0 0.0 3.1 1 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|330834419|ref|YP_004409147.1| - 6.7e-08 33.3 0.4 2.6e-07 31.4 0.1 2.2 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|330834419|ref|YP_004409147.1| - 2.6e-07 30.6 0.0 2.3e-06 27.5 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|330834419|ref|YP_004409147.1| - 3.2e-07 30.5 0.1 0.00017 21.6 0.0 3.4 3 1 1 4 4 4 1 AAA ATPase domain AAA_25 PF13481.1 gi|330834419|ref|YP_004409147.1| - 5.3e-07 29.2 0.2 0.024 14.0 0.0 2.6 1 1 1 2 2 2 2 AAA domain Vps4_C PF09336.5 gi|330834419|ref|YP_004409147.1| - 6.5e-07 29.1 0.2 2.4e-06 27.3 0.0 2.0 2 0 0 2 2 1 1 Vps4 C terminal oligomerisation domain AAA_5 PF07728.9 gi|330834419|ref|YP_004409147.1| - 1.1e-06 28.3 0.0 7.5e-06 25.7 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ABC_tran PF00005.22 gi|330834419|ref|YP_004409147.1| - 7.2e-06 26.3 0.0 0.006 16.8 0.0 2.3 2 0 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.7 gi|330834419|ref|YP_004409147.1| - 3.8e-05 22.8 0.0 0.00011 21.3 0.0 1.8 1 0 0 1 1 1 1 Zeta toxin Arch_ATPase PF01637.13 gi|330834419|ref|YP_004409147.1| - 6.4e-05 22.7 0.7 0.17 11.5 0.0 2.8 2 1 1 3 3 2 2 Archaeal ATPase TIP49 PF06068.8 gi|330834419|ref|YP_004409147.1| - 0.00012 20.9 0.0 0.00021 20.1 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus RNA_helicase PF00910.17 gi|330834419|ref|YP_004409147.1| - 0.00018 21.6 0.1 0.0031 17.6 0.0 2.8 3 1 0 3 3 2 1 RNA helicase AAA_33 PF13671.1 gi|330834419|ref|YP_004409147.1| - 0.00023 21.0 0.0 0.00072 19.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain SKI PF01202.17 gi|330834419|ref|YP_004409147.1| - 0.0012 18.7 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase Mg_chelatase PF01078.16 gi|330834419|ref|YP_004409147.1| - 0.0014 17.8 0.0 0.0031 16.6 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|330834419|ref|YP_004409147.1| - 0.0015 18.1 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_24 PF13479.1 gi|330834419|ref|YP_004409147.1| - 0.0025 17.4 0.0 0.0084 15.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330834419|ref|YP_004409147.1| - 0.0026 18.0 0.0 0.009 16.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain ResIII PF04851.10 gi|330834419|ref|YP_004409147.1| - 0.0037 17.1 0.0 0.013 15.3 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|330834419|ref|YP_004409147.1| - 0.0062 15.9 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein KAP_NTPase PF07693.9 gi|330834419|ref|YP_004409147.1| - 0.0067 15.4 0.0 0.5 9.2 0.0 2.3 1 1 1 2 2 2 1 KAP family P-loop domain AAA_19 PF13245.1 gi|330834419|ref|YP_004409147.1| - 0.0096 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|330834419|ref|YP_004409147.1| - 0.0097 15.5 0.0 0.035 13.7 0.0 2.0 1 1 1 2 2 2 1 NACHT domain AAA_28 PF13521.1 gi|330834419|ref|YP_004409147.1| - 0.013 15.4 0.0 0.043 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|330834419|ref|YP_004409147.1| - 0.014 14.3 0.0 0.033 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ATP-synt_ab PF00006.20 gi|330834419|ref|YP_004409147.1| - 0.014 14.8 0.0 0.025 14.0 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TPR_11 PF13414.1 gi|330834419|ref|YP_004409147.1| - 0.016 14.8 0.3 0.042 13.4 0.2 1.8 1 1 0 1 1 1 0 TPR repeat TPR_6 PF13174.1 gi|330834419|ref|YP_004409147.1| - 0.023 15.1 0.7 0.22 12.0 0.0 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Bac_DnaA PF00308.13 gi|330834419|ref|YP_004409147.1| - 0.032 13.8 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial dnaA protein NB-ARC PF00931.17 gi|330834419|ref|YP_004409147.1| - 0.034 13.0 0.0 0.081 11.7 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain Sigma54_activat PF00158.21 gi|330834419|ref|YP_004409147.1| - 0.039 13.4 0.0 0.088 12.2 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain CPT PF07931.7 gi|330834419|ref|YP_004409147.1| - 0.04 13.5 0.0 0.15 11.6 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin2 PF13189.1 gi|330834419|ref|YP_004409147.1| - 0.042 13.7 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Cytidylate kinase-like family AAA_3 PF07726.6 gi|330834419|ref|YP_004409147.1| - 0.049 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|330834419|ref|YP_004409147.1| - 0.053 12.3 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA-ATPase_like PF09820.4 gi|330834419|ref|YP_004409147.1| - 0.055 12.6 0.1 0.15 11.1 0.0 1.8 2 0 0 2 2 2 0 Predicted AAA-ATPase NTPase_1 PF03266.10 gi|330834419|ref|YP_004409147.1| - 0.068 12.8 0.0 0.71 9.5 0.0 2.3 1 1 1 2 2 2 0 NTPase TPR_1 PF00515.23 gi|330834419|ref|YP_004409147.1| - 0.072 12.7 0.0 0.34 10.6 0.0 2.2 2 0 0 2 2 1 0 Tetratricopeptide repeat GBP_repeat PF02526.9 gi|330834419|ref|YP_004409147.1| - 0.15 11.4 0.7 2.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Glycophorin-binding protein Rad50_zn_hook PF04423.9 gi|330834419|ref|YP_004409147.1| - 1.2 8.6 2.9 51 3.4 0.1 3.3 3 0 0 3 3 3 0 Rad50 zinc hook motif TrmB PF01978.14 gi|330834420|ref|YP_004409148.1| - 8.9e-05 22.1 0.5 0.0021 17.6 0.0 2.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Snf7 PF03357.16 gi|330834420|ref|YP_004409148.1| - 0.00032 20.1 5.6 0.00032 20.1 3.9 2.2 2 1 0 2 2 2 1 Snf7 GntR PF00392.16 gi|330834420|ref|YP_004409148.1| - 0.05 13.0 0.1 0.16 11.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MRP-L28 PF09812.4 gi|330834420|ref|YP_004409148.1| - 0.059 13.1 0.1 0.12 12.1 0.1 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L28 AIP3 PF03915.8 gi|330834421|ref|YP_004409149.1| - 0.00062 18.7 4.3 0.00074 18.5 3.0 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 PhaP_Bmeg PF09602.5 gi|330834421|ref|YP_004409149.1| - 0.0042 16.9 0.8 0.0062 16.3 0.5 1.2 1 0 0 1 1 1 1 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF515 PF04415.7 gi|330834421|ref|YP_004409149.1| - 0.006 14.8 6.4 0.0075 14.5 4.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF515) Exonuc_VII_L PF02601.10 gi|330834421|ref|YP_004409149.1| - 0.0088 15.2 2.6 0.011 14.9 1.8 1.1 1 0 0 1 1 1 1 Exonuclease VII, large subunit PRC PF05239.11 gi|330834421|ref|YP_004409149.1| - 0.015 15.1 0.3 0.034 14.0 0.2 1.5 1 0 0 1 1 1 0 PRC-barrel domain Nitrate_red_del PF02613.10 gi|330834421|ref|YP_004409149.1| - 0.023 14.5 0.1 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Nitrate reductase delta subunit SHOCT PF09851.4 gi|330834421|ref|YP_004409149.1| - 0.13 11.7 4.4 0.13 11.8 0.6 2.4 2 0 0 2 2 2 0 Short C-terminal domain SPX PF03105.14 gi|330834421|ref|YP_004409149.1| - 0.16 11.7 5.0 0.23 11.2 3.4 1.3 1 1 0 1 1 1 0 SPX domain COG2 PF06148.6 gi|330834421|ref|YP_004409149.1| - 0.18 11.7 2.2 0.28 11.0 0.9 1.8 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF342 PF03961.8 gi|330834421|ref|YP_004409149.1| - 0.18 10.2 6.3 0.25 9.6 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Syntaxin PF00804.20 gi|330834421|ref|YP_004409149.1| - 0.26 11.4 7.0 0.62 10.2 4.7 1.8 1 1 0 1 1 1 0 Syntaxin Mod_r PF07200.8 gi|330834421|ref|YP_004409149.1| - 0.3 11.0 7.1 0.063 13.2 2.2 1.7 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DUF724 PF05266.9 gi|330834421|ref|YP_004409149.1| - 0.5 9.9 10.3 0.98 9.0 7.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF724) IncA PF04156.9 gi|330834421|ref|YP_004409149.1| - 0.57 9.7 5.4 0.82 9.2 3.8 1.3 1 1 0 1 1 1 0 IncA protein DUF883 PF05957.8 gi|330834421|ref|YP_004409149.1| - 1.2 9.6 4.2 4.5 7.7 2.4 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF904 PF06005.7 gi|330834421|ref|YP_004409149.1| - 1.7 8.9 8.0 1.1 9.5 3.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF904) ISG65-75 PF11727.3 gi|330834421|ref|YP_004409149.1| - 2 7.4 7.8 1.9 7.4 4.8 1.3 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF947 PF06102.7 gi|330834421|ref|YP_004409149.1| - 2.3 8.0 12.6 0.38 10.5 5.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF947) MtrG PF04210.8 gi|330834421|ref|YP_004409149.1| - 3.3 7.4 6.9 8.6 6.1 0.1 3.6 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Glucos_trans_II PF14264.1 gi|330834422|ref|YP_004409150.1| - 0.1 11.5 6.0 0.11 11.4 4.2 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII Oxidored_q5_N PF01059.12 gi|330834422|ref|YP_004409150.1| - 0.13 12.0 2.2 0.2 11.5 1.5 1.3 1 1 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus DUF2142 PF09913.4 gi|330834422|ref|YP_004409150.1| - 0.16 10.6 5.4 0.17 10.4 3.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) Tetraspannin PF00335.15 gi|330834422|ref|YP_004409150.1| - 0.19 10.9 5.5 0.21 10.8 3.8 1.1 1 0 0 1 1 1 0 Tetraspanin family CytB6-F_Fe-S PF08802.5 gi|330834422|ref|YP_004409150.1| - 0.23 11.4 0.1 0.23 11.4 0.1 2.4 3 1 0 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Bac_export_3 PF01313.14 gi|330834422|ref|YP_004409150.1| - 0.37 10.4 7.6 0.65 9.7 5.2 1.4 1 0 0 1 1 1 0 Bacterial export proteins, family 3 DUF2427 PF10348.4 gi|330834422|ref|YP_004409150.1| - 0.59 9.7 4.3 0.79 9.3 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2427) DUF21 PF01595.15 gi|330834422|ref|YP_004409150.1| - 0.66 9.2 7.6 0.69 9.1 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF21 Claudin_2 PF13903.1 gi|330834422|ref|YP_004409150.1| - 0.77 9.4 4.7 1 9.0 3.2 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Fig1 PF12351.3 gi|330834422|ref|YP_004409150.1| - 0.8 9.5 5.2 0.82 9.5 3.6 1.1 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 YfhO PF09586.5 gi|330834422|ref|YP_004409150.1| - 1 7.3 3.6 1.2 7.0 2.5 1.0 1 0 0 1 1 1 0 Bacterial membrane protein YfhO UNC-50 PF05216.8 gi|330834422|ref|YP_004409150.1| - 2.2 7.4 6.1 2.2 7.4 4.2 1.0 1 0 0 1 1 1 0 UNC-50 family DUF3671 PF12420.3 gi|330834422|ref|YP_004409150.1| - 2.8 7.9 4.7 3.6 7.6 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function PrgI PF12666.2 gi|330834422|ref|YP_004409150.1| - 3 8.0 7.5 0.82 9.8 0.7 2.1 1 1 1 2 2 2 0 PrgI family protein Brr6_like_C_C PF10104.4 gi|330834422|ref|YP_004409150.1| - 3.7 7.0 5.4 1.5 8.3 0.2 2.1 1 1 0 2 2 2 0 Di-sulfide bridge nucleocytoplasmic transport domain DUF202 PF02656.10 gi|330834422|ref|YP_004409150.1| - 5.5 7.2 8.1 9.3 6.5 0.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) DUF1418 PF07214.7 gi|330834422|ref|YP_004409150.1| - 6 6.5 6.8 0.59 9.7 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) Enolase_C PF00113.17 gi|330834423|ref|YP_004409151.1| - 2.8e-92 308.8 0.1 3.9e-92 308.3 0.0 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|330834423|ref|YP_004409151.1| - 9e-40 135.6 0.2 1.4e-39 135.0 0.2 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain UPF0547 PF10571.4 gi|330834424|ref|YP_004409152.1| - 0.00011 21.8 5.2 0.0013 18.3 3.5 2.1 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 Cren7 PF11520.3 gi|330834424|ref|YP_004409152.1| - 0.00012 21.6 1.3 0.00041 19.9 0.0 2.2 2 1 0 2 2 2 1 Chromatin protein Cren7 zf-ribbon_3 PF13248.1 gi|330834424|ref|YP_004409152.1| - 0.00013 21.0 4.9 0.03 13.5 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330834424|ref|YP_004409152.1| - 0.00037 20.3 1.5 0.58 10.1 0.3 2.2 2 0 0 2 2 2 2 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|330834424|ref|YP_004409152.1| - 0.00047 19.4 1.5 0.54 9.6 0.1 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding DZR PF12773.2 gi|330834424|ref|YP_004409152.1| - 0.00068 19.4 1.1 0.002 17.9 0.8 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_5 PF13719.1 gi|330834424|ref|YP_004409152.1| - 0.00073 19.0 3.1 0.091 12.3 0.2 2.6 2 1 0 2 2 2 1 zinc-ribbon domain CpXC PF14353.1 gi|330834424|ref|YP_004409152.1| - 0.0012 18.7 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 CpXC protein zf-IS66 PF13005.2 gi|330834424|ref|YP_004409152.1| - 0.0016 18.4 0.5 1.3 9.0 0.0 2.3 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|330834424|ref|YP_004409152.1| - 0.0021 17.7 0.3 1.7 8.3 0.0 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|330834424|ref|YP_004409152.1| - 0.0028 17.2 3.8 0.25 11.0 0.4 2.6 2 1 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330834424|ref|YP_004409152.1| - 0.0033 16.8 7.9 0.11 12.0 0.1 2.7 3 0 0 3 3 2 2 zinc-ribbon domain TFIIS_C PF01096.13 gi|330834424|ref|YP_004409152.1| - 0.0058 16.2 3.8 0.021 14.4 0.2 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DUF4379 PF14311.1 gi|330834424|ref|YP_004409152.1| - 0.0072 16.1 1.6 0.02 14.7 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4379) Cys_rich_CPXG PF14255.1 gi|330834424|ref|YP_004409152.1| - 0.0074 16.0 0.3 0.72 9.7 0.0 2.4 2 0 0 2 2 2 1 Cysteine-rich CPXCG Zn_Tnp_IS1595 PF12760.2 gi|330834424|ref|YP_004409152.1| - 0.013 15.3 3.4 0.13 12.0 2.6 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|330834424|ref|YP_004409152.1| - 0.016 14.8 0.7 2.9 7.6 0.0 2.4 2 0 0 2 2 2 0 Nudix N-terminal zf-3CxxC PF13695.1 gi|330834424|ref|YP_004409152.1| - 0.017 15.3 0.5 0.031 14.4 0.0 1.8 2 0 0 2 2 2 0 Zinc-binding domain Ogr_Delta PF04606.7 gi|330834424|ref|YP_004409152.1| - 0.022 14.4 2.5 0.9 9.2 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ZPR1 PF03367.8 gi|330834424|ref|YP_004409152.1| - 0.024 13.7 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 ZPR1 zinc-finger domain DUF1610 PF07754.6 gi|330834424|ref|YP_004409152.1| - 0.027 14.5 10.2 0.42 10.7 1.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) FYDLN_acid PF09538.5 gi|330834424|ref|YP_004409152.1| - 0.03 14.8 0.8 2.4 8.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-NADH-PPase PF09297.6 gi|330834424|ref|YP_004409152.1| - 0.034 13.6 3.1 3.4 7.2 0.1 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|330834424|ref|YP_004409152.1| - 0.037 13.4 0.9 2.5 7.6 0.0 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.11 gi|330834424|ref|YP_004409152.1| - 0.038 13.6 2.1 1.2 8.8 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF1272 PF06906.6 gi|330834424|ref|YP_004409152.1| - 0.038 13.8 0.7 2.4 8.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) TerY-C PF15616.1 gi|330834424|ref|YP_004409152.1| - 0.051 13.5 0.4 5 7.0 0.0 2.2 2 0 0 2 2 2 0 TerY-C metal binding domain zf-nanos PF05741.8 gi|330834424|ref|YP_004409152.1| - 0.054 13.4 0.1 1.6 8.7 0.0 2.2 2 0 0 2 2 2 0 Nanos RNA binding domain zf-RING_3 PF14369.1 gi|330834424|ref|YP_004409152.1| - 0.069 13.1 1.6 2.8 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-finger zf-TFIIB PF13453.1 gi|330834424|ref|YP_004409152.1| - 0.084 12.0 0.8 9.9 5.4 0.1 2.4 2 0 0 2 2 2 0 Transcription factor zinc-finger Prim_Zn_Ribbon PF08273.7 gi|330834424|ref|YP_004409152.1| - 0.11 12.5 3.3 4.7 7.3 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-FPG_IleRS PF06827.9 gi|330834424|ref|YP_004409152.1| - 0.12 12.0 1.7 3.1 7.5 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-tcix PF14952.1 gi|330834424|ref|YP_004409152.1| - 0.12 11.7 1.3 8.6 5.7 0.1 2.4 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding PhnA_Zn_Ribbon PF08274.7 gi|330834424|ref|YP_004409152.1| - 0.16 11.7 3.1 3.2 7.6 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ISL3 PF14690.1 gi|330834424|ref|YP_004409152.1| - 0.17 11.9 6.7 2.1 8.4 0.1 2.5 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DNA_ligase_ZBD PF03119.11 gi|330834424|ref|YP_004409152.1| - 0.21 11.3 6.0 1 9.1 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF329 PF03884.9 gi|330834424|ref|YP_004409152.1| - 0.24 10.9 1.2 19 4.9 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-H2C2_2 PF13465.1 gi|330834424|ref|YP_004409152.1| - 0.3 11.4 1.7 4.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Rubredoxin PF00301.15 gi|330834424|ref|YP_004409152.1| - 0.34 10.8 3.5 13 5.7 0.2 2.4 2 0 0 2 2 2 0 Rubredoxin DUF2296 PF10058.4 gi|330834424|ref|YP_004409152.1| - 0.35 10.6 1.6 8.8 6.1 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Sgf11 PF08209.6 gi|330834424|ref|YP_004409152.1| - 0.39 10.0 3.9 9.2 5.6 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-Mss51 PF13824.1 gi|330834424|ref|YP_004409152.1| - 0.81 9.5 2.8 6.9 6.6 1.9 2.2 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 GDC-P PF02347.11 gi|330834426|ref|YP_004409154.1| - 3e-19 69.0 0.0 9.3e-18 64.1 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|330834426|ref|YP_004409154.1| - 6.7e-06 25.0 0.0 1.8e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|330834426|ref|YP_004409154.1| - 1.9e-05 23.9 0.0 3.2e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|330834427|ref|YP_004409155.1| - 1.1e-118 396.6 0.0 1.4e-118 396.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein DUF3685 PF12452.3 gi|330834427|ref|YP_004409155.1| - 0.027 13.6 0.2 0.046 12.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3685) GCV_T PF01571.16 gi|330834428|ref|YP_004409156.1| - 1.3e-46 158.6 0.0 1.7e-46 158.2 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|330834428|ref|YP_004409156.1| - 6e-21 74.2 0.0 1.1e-20 73.4 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GCV_H PF01597.14 gi|330834429|ref|YP_004409157.1| - 2.4e-46 156.3 0.4 2.7e-46 156.1 0.3 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|330834429|ref|YP_004409157.1| - 3.5e-06 26.5 0.2 8.4e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|330834429|ref|YP_004409157.1| - 0.00022 20.8 0.2 0.0004 20.0 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PAC2 PF09754.4 gi|330834430|ref|YP_004409158.1| - 6.5e-27 94.8 0.0 8.4e-27 94.4 0.0 1.0 1 0 0 1 1 1 1 PAC2 family HSP20 PF00011.16 gi|330834431|ref|YP_004409159.1| - 0.047 13.5 0.3 1.7 8.5 0.2 2.3 1 1 0 1 1 1 0 Hsp20/alpha crystallin family His_kinase PF06580.8 gi|330834431|ref|YP_004409159.1| - 0.098 12.5 0.4 0.16 11.8 0.3 1.3 1 0 0 1 1 1 0 Histidine kinase Antitoxin-MazE PF04014.13 gi|330834432|ref|YP_004409160.1| - 5.4e-09 35.5 1.1 1.2e-08 34.5 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE ParcG PF10274.4 gi|330834432|ref|YP_004409160.1| - 0.0066 16.3 0.8 0.014 15.3 0.6 1.6 1 0 0 1 1 1 1 Parkin co-regulated protein DUF1128 PF06569.6 gi|330834432|ref|YP_004409160.1| - 0.047 13.4 1.4 0.45 10.2 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1128) DHDPS PF00701.17 gi|330834432|ref|YP_004409160.1| - 0.055 12.0 0.0 0.16 10.5 0.0 1.7 1 1 0 2 2 2 0 Dihydrodipicolinate synthetase family SapC PF07277.6 gi|330834432|ref|YP_004409160.1| - 0.059 12.6 0.2 0.094 12.0 0.1 1.3 1 0 0 1 1 1 0 SapC DUF1268 PF06896.6 gi|330834432|ref|YP_004409160.1| - 0.083 13.2 7.0 0.14 12.5 0.7 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1268) ABC_tran PF00005.22 gi|330834433|ref|YP_004409161.1| - 1.1e-23 84.1 0.1 1.4e-23 83.6 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834433|ref|YP_004409161.1| - 3.2e-10 40.4 0.0 6.5e-09 36.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330834433|ref|YP_004409161.1| - 3.5e-07 29.6 0.1 1.9e-06 27.2 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330834433|ref|YP_004409161.1| - 0.0024 17.3 0.1 0.0062 16.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|330834433|ref|YP_004409161.1| - 0.0054 15.9 0.1 0.0089 15.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|330834433|ref|YP_004409161.1| - 0.0067 16.3 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|330834433|ref|YP_004409161.1| - 0.027 13.8 0.1 0.071 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|330834433|ref|YP_004409161.1| - 0.029 12.8 0.1 0.089 11.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330834433|ref|YP_004409161.1| - 0.068 13.9 0.1 0.18 12.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|330834433|ref|YP_004409161.1| - 0.078 13.1 0.2 0.16 12.2 0.1 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|330834433|ref|YP_004409161.1| - 0.078 12.8 0.0 0.18 11.7 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|330834433|ref|YP_004409161.1| - 0.11 12.8 0.5 0.16 12.2 0.3 1.4 1 1 0 1 1 1 0 AAA domain UPF0051 PF01458.12 gi|330834434|ref|YP_004409162.1| - 6.3e-60 202.4 0.0 7.8e-60 202.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|330834435|ref|YP_004409163.1| - 1.2e-42 145.8 0.7 1.6e-42 145.5 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) CEP1-DNA_bind PF09287.5 gi|330834435|ref|YP_004409163.1| - 0.022 14.2 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 CEP-1, DNA binding DUF1939 PF09154.5 gi|330834435|ref|YP_004409163.1| - 0.083 12.7 0.0 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1939) PGK PF00162.14 gi|330834437|ref|YP_004409165.1| - 3e-107 358.5 0.0 3.4e-107 358.3 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.15 gi|330834438|ref|YP_004409166.1| - 1e-21 76.9 2.1 1.6e-21 76.3 1.5 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|330834438|ref|YP_004409166.1| - 3.3e-19 69.3 0.3 1e-18 67.7 0.2 1.9 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|330834438|ref|YP_004409166.1| - 1.2e-11 44.6 0.2 3.2e-11 43.2 0.1 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|330834438|ref|YP_004409166.1| - 0.00054 19.1 0.9 0.047 12.8 0.1 3.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|330834438|ref|YP_004409166.1| - 0.0017 18.7 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|330834438|ref|YP_004409166.1| - 0.0025 18.0 0.1 0.0064 16.7 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DUF1188 PF06690.6 gi|330834438|ref|YP_004409166.1| - 0.0066 15.6 0.0 0.014 14.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1188) NAD_binding_2 PF03446.10 gi|330834438|ref|YP_004409166.1| - 0.086 12.6 1.2 1.1 9.0 0.1 2.8 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TROVE PF05731.6 gi|330834438|ref|YP_004409166.1| - 0.092 11.4 0.0 0.14 10.9 0.0 1.2 1 0 0 1 1 1 0 TROVE domain Usp PF00582.21 gi|330834439|ref|YP_004409167.1| - 7.5e-19 68.3 0.1 1.4e-18 67.4 0.0 1.4 1 1 0 1 1 1 1 Universal stress protein family SHMT PF00464.14 gi|330834440|ref|YP_004409168.1| - 1.5e-61 207.9 0.1 2e-61 207.5 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|330834440|ref|YP_004409168.1| - 4.7e-07 29.2 0.0 6e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|330834440|ref|YP_004409168.1| - 1.6e-06 27.3 0.0 5.9e-05 22.1 0.0 2.7 2 1 0 2 2 2 1 Aminotransferase class I and II DUF919 PF06034.6 gi|330834440|ref|YP_004409168.1| - 0.1 12.2 0.8 1 9.0 0.5 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HMG-CoA_red PF00368.13 gi|330834441|ref|YP_004409169.1| - 8.4e-145 482.1 0.2 9.7e-145 481.9 0.1 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase CcdA PF07362.7 gi|330834441|ref|YP_004409169.1| - 0.094 12.5 0.3 0.39 10.6 0.0 2.1 2 0 0 2 2 2 0 Post-segregation antitoxin CcdA DUF35 PF01796.12 gi|330834442|ref|YP_004409170.1| - 5.4e-14 52.1 0.1 7.7e-14 51.6 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|330834442|ref|YP_004409170.1| - 2.3e-08 33.6 0.2 3.6e-08 33.0 0.1 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.14 gi|330834442|ref|YP_004409170.1| - 0.0064 16.2 1.3 0.011 15.5 0.9 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|330834442|ref|YP_004409170.1| - 0.0072 16.1 1.2 0.012 15.4 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L32p PF01783.18 gi|330834442|ref|YP_004409170.1| - 0.12 12.5 0.9 0.2 11.8 0.4 1.5 1 1 0 1 1 1 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.7 gi|330834442|ref|YP_004409170.1| - 0.32 10.3 4.0 8.2 5.8 0.3 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|330834442|ref|YP_004409170.1| - 5.9 6.2 6.6 31 3.9 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain ACP_syn_III PF08545.5 gi|330834443|ref|YP_004409171.1| - 0.00026 20.6 0.2 0.025 14.2 0.0 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|330834443|ref|YP_004409171.1| - 0.0033 16.4 0.2 0.0084 15.1 0.0 1.7 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|330834443|ref|YP_004409171.1| - 0.0097 15.4 0.1 0.024 14.1 0.1 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Glyco_trans_4_4 PF13579.1 gi|330834443|ref|YP_004409171.1| - 0.025 14.7 0.0 0.11 12.6 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Thiolase_C PF02803.13 gi|330834443|ref|YP_004409171.1| - 0.072 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain ACP_syn_III_C PF08541.5 gi|330834444|ref|YP_004409172.1| - 1.8e-11 43.8 0.0 6.5e-11 42.0 0.0 1.9 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|330834444|ref|YP_004409172.1| - 2.1e-06 27.2 1.3 7.2e-06 25.5 0.9 1.9 1 0 0 1 1 1 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.5 gi|330834444|ref|YP_004409172.1| - 2.1e-05 24.1 0.1 0.0042 16.6 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.12 gi|330834444|ref|YP_004409172.1| - 0.0073 15.8 0.1 0.011 15.3 0.1 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_C PF02803.13 gi|330834444|ref|YP_004409172.1| - 0.017 14.5 0.0 0.045 13.1 0.0 1.7 1 0 0 1 1 1 0 Thiolase, C-terminal domain AdoMet_dc PF02675.10 gi|330834445|ref|YP_004409173.1| - 1.6e-33 114.7 0.0 1.8e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF4507 PF14964.1 gi|330834445|ref|YP_004409173.1| - 0.0097 14.6 0.0 0.011 14.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4507) SP_C-Propep PF08999.5 gi|330834446|ref|YP_004409174.1| - 0.027 13.9 0.4 0.041 13.3 0.2 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide 7tm_1 PF00001.16 gi|330834446|ref|YP_004409174.1| - 0.049 12.7 0.9 0.064 12.3 0.6 1.1 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) MtN3_slv PF03083.11 gi|330834446|ref|YP_004409174.1| - 0.068 13.0 0.5 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange DUF948 PF06103.6 gi|330834446|ref|YP_004409174.1| - 0.11 12.3 0.8 0.21 11.4 0.5 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) ODV-E18 PF10717.4 gi|330834446|ref|YP_004409174.1| - 0.21 11.0 1.6 0.4 10.1 1.1 1.4 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 DUF1628 PF07790.6 gi|330834447|ref|YP_004409175.1| - 0.0009 19.9 2.1 0.069 13.9 0.2 3.4 2 1 1 3 3 3 1 Protein of unknown function (DUF1628) DUF3139 PF11337.3 gi|330834447|ref|YP_004409175.1| - 0.0038 17.4 2.5 0.0046 17.1 0.3 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3139) Lum_binding PF00677.12 gi|330834447|ref|YP_004409175.1| - 0.073 12.9 0.3 0.19 11.6 0.2 1.8 1 0 0 1 1 1 0 Lumazine binding domain CBM_X2 PF03442.9 gi|330834448|ref|YP_004409176.1| - 0.044 13.6 2.0 2.3 8.0 0.3 2.9 2 0 0 2 2 2 0 Carbohydrate binding domain X2 DUF1282 PF06930.7 gi|330834448|ref|YP_004409176.1| - 4.5 6.8 9.8 0.7 9.5 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1282) STAT6_C PF14596.1 gi|330834449|ref|YP_004409177.1| - 0.099 12.5 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 STAT6 C-terminal PQ-loop PF04193.9 gi|330834449|ref|YP_004409177.1| - 0.11 12.0 2.6 0.16 11.5 0.6 2.1 2 0 0 2 2 2 0 PQ loop repeat DUF434 PF04256.7 gi|330834451|ref|YP_004409179.1| - 1.5e-14 53.0 0.3 2.7e-14 52.2 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Mut7-C PF01927.11 gi|330834451|ref|YP_004409179.1| - 0.013 15.4 0.1 0.073 13.0 0.0 1.9 2 0 0 2 2 2 0 Mut7-C RNAse domain tRNA-synt_2c PF01411.14 gi|330834452|ref|YP_004409180.1| - 6.6e-120 401.0 0.0 8.6e-120 400.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|330834452|ref|YP_004409180.1| - 6.5e-13 48.3 0.2 1.4e-12 47.2 0.1 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|330834452|ref|YP_004409180.1| - 0.0002 20.9 0.9 0.00051 19.7 0.6 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA-synt_2e PF02091.10 gi|330834452|ref|YP_004409180.1| - 0.0016 17.5 0.0 0.0053 15.9 0.0 1.8 1 1 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Ribosomal_L31e PF01198.14 gi|330834452|ref|YP_004409180.1| - 0.052 13.2 0.3 0.18 11.4 0.2 2.0 1 0 0 1 1 1 0 Ribosomal protein L31e Ribosomal_60s PF00428.14 gi|330834453|ref|YP_004409181.1| - 3.6e-18 65.7 13.6 4.1e-18 65.5 9.4 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.1 gi|330834453|ref|YP_004409181.1| - 0.0034 17.2 2.0 0.64 9.9 0.1 2.2 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain Ribosomal_L10 PF00466.15 gi|330834454|ref|YP_004409182.1| - 3e-26 91.2 1.1 9.3e-26 89.6 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|330834454|ref|YP_004409182.1| - 0.00015 22.0 5.0 0.00031 21.0 3.5 1.6 1 0 0 1 1 1 1 60s Acidic ribosomal protein Ribosomal_L1 PF00687.16 gi|330834455|ref|YP_004409183.1| - 5.4e-38 130.5 1.2 6.4e-38 130.3 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|330834456|ref|YP_004409184.1| - 1.1e-21 76.7 1.8 1.9e-21 75.9 1.3 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|330834456|ref|YP_004409184.1| - 2.7e-21 74.7 0.9 4.6e-21 74.0 0.6 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain HsbA PF12296.3 gi|330834456|ref|YP_004409184.1| - 0.067 13.0 0.8 0.44 10.4 0.2 2.0 2 0 0 2 2 2 0 Hydrophobic surface binding protein A Spt5-NGN PF03439.8 gi|330834457|ref|YP_004409185.1| - 2.4e-22 78.4 0.1 3.9e-22 77.8 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|330834457|ref|YP_004409185.1| - 0.00013 21.5 0.0 0.00038 20.0 0.0 1.8 1 0 0 1 1 1 1 KOW motif NusG PF02357.14 gi|330834457|ref|YP_004409185.1| - 0.00019 21.6 0.0 0.00055 20.1 0.0 1.8 1 1 0 1 1 1 1 Transcription termination factor nusG Lambda_CIII PF02061.11 gi|330834458|ref|YP_004409186.1| - 0.0085 16.0 0.6 0.013 15.4 0.4 1.2 1 0 0 1 1 1 1 Lambda Phage CIII SecE PF00584.15 gi|330834458|ref|YP_004409186.1| - 0.049 13.2 0.1 0.049 13.2 0.1 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex PsbI PF02532.9 gi|330834458|ref|YP_004409186.1| - 0.5 10.0 4.4 0.77 9.4 3.0 1.3 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) SRP54 PF00448.17 gi|330834459|ref|YP_004409187.1| - 8.5e-72 240.7 0.1 1.3e-71 240.1 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|330834459|ref|YP_004409187.1| - 1.6e-09 37.7 7.4 1.6e-09 37.7 5.1 3.3 3 1 0 3 3 3 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|330834459|ref|YP_004409187.1| - 1.4e-06 27.8 0.1 2.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|330834459|ref|YP_004409187.1| - 5.8e-06 26.4 0.1 3.3e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|330834459|ref|YP_004409187.1| - 1.4e-05 24.7 0.2 2.5e-05 23.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|330834459|ref|YP_004409187.1| - 0.00014 21.5 0.1 0.00049 19.8 0.1 2.0 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|330834459|ref|YP_004409187.1| - 0.00023 20.0 1.7 0.0034 16.2 0.3 2.5 2 1 0 2 2 2 1 ArgK protein AAA_33 PF13671.1 gi|330834459|ref|YP_004409187.1| - 0.00034 20.5 0.1 0.0014 18.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|330834459|ref|YP_004409187.1| - 0.0011 18.8 0.0 0.0033 17.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|330834459|ref|YP_004409187.1| - 0.0056 16.4 3.0 0.11 12.2 0.5 3.1 1 1 0 2 2 2 1 NTPase AAA PF00004.24 gi|330834459|ref|YP_004409187.1| - 0.017 15.2 0.2 0.054 13.6 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|330834459|ref|YP_004409187.1| - 0.021 14.5 0.3 0.1 12.2 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase ABC_tran PF00005.22 gi|330834459|ref|YP_004409187.1| - 0.037 14.3 1.5 0.42 10.8 0.0 2.3 2 0 0 2 2 2 0 ABC transporter Thymidylate_kin PF02223.12 gi|330834459|ref|YP_004409187.1| - 0.042 13.2 0.7 0.23 10.8 0.0 2.5 2 1 0 2 2 2 0 Thymidylate kinase AAA_29 PF13555.1 gi|330834459|ref|YP_004409187.1| - 0.07 12.6 0.0 0.16 11.5 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|330834459|ref|YP_004409187.1| - 0.12 11.9 1.7 0.21 11.2 0.1 2.2 3 0 0 3 3 3 0 NACHT domain AAA_16 PF13191.1 gi|330834459|ref|YP_004409187.1| - 0.14 12.1 3.1 0.24 11.3 0.1 2.6 1 1 1 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|330834459|ref|YP_004409187.1| - 0.16 10.8 3.8 0.34 9.7 0.2 2.4 1 1 1 2 2 2 0 NB-ARC domain DUF507 PF04368.8 gi|330834459|ref|YP_004409187.1| - 0.49 10.0 12.3 0.03 13.9 4.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF507) CbiA PF01656.18 gi|330834459|ref|YP_004409187.1| - 0.65 9.3 12.3 0.014 14.8 1.8 2.8 2 2 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain Arch_ATPase PF01637.13 gi|330834459|ref|YP_004409187.1| - 1.3 8.6 11.4 0.23 11.1 0.1 2.8 2 1 1 3 3 3 0 Archaeal ATPase Prefoldin PF02996.12 gi|330834460|ref|YP_004409188.1| - 1e-18 67.1 4.7 1.7e-18 66.3 3.2 1.4 1 1 0 1 1 1 1 Prefoldin subunit HHH_6 PF14579.1 gi|330834460|ref|YP_004409188.1| - 0.0021 18.0 0.5 0.12 12.4 0.0 2.9 1 1 2 3 3 3 1 Helix-hairpin-helix motif HrpB7 PF09486.5 gi|330834460|ref|YP_004409188.1| - 0.0036 17.2 1.3 0.054 13.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial type III secretion protein (HrpB7) Sec8_exocyst PF04048.9 gi|330834460|ref|YP_004409188.1| - 0.016 14.8 2.0 0.18 11.4 0.2 2.1 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain MscS_porin PF12795.2 gi|330834460|ref|YP_004409188.1| - 0.033 13.5 7.9 0.13 11.5 0.1 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DCA16 PF15349.1 gi|330834460|ref|YP_004409188.1| - 0.046 13.0 0.0 0.048 13.0 0.0 1.1 1 0 0 1 1 1 0 DDB1- and CUL4-associated factor 16 Fib_alpha PF08702.5 gi|330834460|ref|YP_004409188.1| - 0.047 13.8 4.4 0.6 10.2 0.8 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Sec20 PF03908.8 gi|330834460|ref|YP_004409188.1| - 0.047 13.3 3.7 1.4 8.6 0.3 2.3 2 0 0 2 2 2 0 Sec20 HisKA_3 PF07730.8 gi|330834460|ref|YP_004409188.1| - 0.078 13.3 1.0 1.9 8.9 0.1 2.4 2 0 0 2 2 2 0 Histidine kinase Acyl-CoA_dh_C PF12806.2 gi|330834460|ref|YP_004409188.1| - 0.088 12.6 1.3 1.1 9.1 0.2 2.1 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like WXG100 PF06013.7 gi|330834460|ref|YP_004409188.1| - 0.095 12.7 3.6 6.7 6.7 0.1 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Pex24p PF06398.6 gi|330834460|ref|YP_004409188.1| - 0.11 11.2 0.5 2.1 7.0 0.1 2.0 1 1 1 2 2 2 0 Integral peroxisomal membrane peroxin DUF3053 PF11254.3 gi|330834460|ref|YP_004409188.1| - 0.16 11.1 2.9 2.1 7.5 0.5 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3053) NPV_P10 PF05531.7 gi|330834460|ref|YP_004409188.1| - 0.17 12.1 5.8 3.3 8.0 0.5 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF217 PF02697.9 gi|330834460|ref|YP_004409188.1| - 0.18 12.0 1.4 1.2 9.3 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 TMF_DNA_bd PF12329.3 gi|330834460|ref|YP_004409188.1| - 0.18 11.6 11.9 1.1 9.0 2.5 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.15 gi|330834460|ref|YP_004409188.1| - 0.22 11.2 10.5 0.6 9.8 0.4 2.1 2 0 0 2 2 2 0 Prefoldin subunit Syntaxin PF00804.20 gi|330834460|ref|YP_004409188.1| - 0.23 11.6 7.9 0.87 9.7 5.5 1.8 1 1 0 1 1 1 0 Syntaxin DUF935 PF06074.7 gi|330834460|ref|YP_004409188.1| - 0.25 10.0 2.3 0.41 9.3 1.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF935) DUF2130 PF09903.4 gi|330834460|ref|YP_004409188.1| - 0.46 9.1 4.8 2.5 6.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) K-box PF01486.12 gi|330834460|ref|YP_004409188.1| - 0.48 10.2 4.9 3.9 7.3 0.1 2.3 2 0 0 2 2 2 0 K-box region CorA PF01544.13 gi|330834460|ref|YP_004409188.1| - 0.69 8.8 3.3 4.9 6.1 0.5 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein IncA PF04156.9 gi|330834460|ref|YP_004409188.1| - 0.8 9.2 6.3 4.2 6.9 0.6 2.1 2 0 0 2 2 2 0 IncA protein Sas10_Utp3 PF04000.10 gi|330834460|ref|YP_004409188.1| - 7.7 6.7 8.4 7.7 6.7 0.9 2.5 3 0 0 3 3 3 0 Sas10/Utp3/C1D family Ribosomal_L18ae PF01775.12 gi|330834461|ref|YP_004409189.1| - 1.5e-11 44.2 0.7 1.2e-10 41.3 0.5 1.9 1 1 0 1 1 1 1 Ribosomal L18ae/LX protein domain LMSTEN PF07988.7 gi|330834461|ref|YP_004409189.1| - 0.97 8.7 4.6 0.7 9.2 1.2 2.2 1 1 0 2 2 2 0 LMSTEN motif eIF-6 PF01912.13 gi|330834462|ref|YP_004409190.1| - 2e-68 229.4 9.4 2.4e-68 229.1 6.5 1.1 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|330834463|ref|YP_004409191.1| - 4.9e-10 38.9 2.2 6.3e-10 38.5 1.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF552 PF04472.7 gi|330834463|ref|YP_004409191.1| - 0.044 13.7 0.2 2.1 8.3 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF552) DUF1400 PF07176.6 gi|330834463|ref|YP_004409191.1| - 0.11 12.4 0.1 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1400) Ribosomal_L39 PF00832.15 gi|330834464|ref|YP_004409192.1| - 1.5e-21 75.5 7.0 1.7e-21 75.3 4.9 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein T_Ag_DNA_bind PF02217.11 gi|330834464|ref|YP_004409192.1| - 0.14 12.5 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein dsDNA_bind PF01984.15 gi|330834465|ref|YP_004409193.1| - 2e-28 98.4 11.7 2.4e-28 98.2 8.1 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SurA_N PF09312.6 gi|330834465|ref|YP_004409193.1| - 0.076 12.8 2.7 0.15 11.9 1.9 1.7 1 1 0 1 1 1 0 SurA N-terminal domain T3SS_LEE_assoc PF13327.1 gi|330834465|ref|YP_004409193.1| - 0.37 10.3 2.2 7.7 6.0 1.5 2.1 1 1 0 1 1 1 0 Type III secretion system subunit PIN_3 PF13470.1 gi|330834465|ref|YP_004409193.1| - 0.91 10.2 4.5 1.8 9.2 0.0 2.0 1 1 1 2 2 2 0 PIN domain Ribosomal_S19e PF01090.14 gi|330834466|ref|YP_004409194.1| - 1e-44 151.3 0.0 1.2e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e QRPTase_C PF01729.14 gi|330834467|ref|YP_004409195.1| - 1.2e-18 67.2 0.0 1.6e-18 66.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|330834467|ref|YP_004409195.1| - 4.2e-05 23.2 0.0 8.4e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Antitoxin-MazE PF04014.13 gi|330834468|ref|YP_004409196.1| - 1.2e-07 31.2 0.0 3.8e-07 29.6 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|330834468|ref|YP_004409196.1| - 0.0036 17.7 2.0 0.0036 17.7 1.4 2.5 2 0 0 2 2 2 1 PhoU domain DUF711 PF05167.7 gi|330834469|ref|YP_004409197.1| - 1e-59 202.2 0.0 1.3e-59 201.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Phage_integrase PF00589.17 gi|330834471|ref|YP_004409199.1| - 3.2e-42 144.1 0.4 4.9e-42 143.5 0.3 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|330834471|ref|YP_004409199.1| - 5.8e-13 48.9 0.0 6e-08 32.8 0.0 2.9 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|330834471|ref|YP_004409199.1| - 1.9e-07 31.1 0.0 1.2e-05 25.4 0.0 2.6 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.2 gi|330834471|ref|YP_004409199.1| - 0.00034 20.4 0.1 0.00053 19.8 0.1 1.3 1 0 0 1 1 1 1 Integrase Phage_int_SAM_3 PF14659.1 gi|330834471|ref|YP_004409199.1| - 0.11 12.8 0.5 0.32 11.3 0.1 2.1 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain Nol1_Nop2_Fmu PF01189.12 gi|330834473|ref|YP_004409201.1| - 1.3e-28 100.2 0.0 3.3e-28 98.8 0.0 1.7 2 0 0 2 2 2 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|330834473|ref|YP_004409201.1| - 1e-05 25.1 0.0 1.7e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330834473|ref|YP_004409201.1| - 1.3e-05 25.1 0.0 2.1e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330834473|ref|YP_004409201.1| - 0.00033 21.1 0.0 0.00057 20.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.15 gi|330834473|ref|YP_004409201.1| - 0.00051 19.7 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 PUA domain MTS PF05175.9 gi|330834473|ref|YP_004409201.1| - 0.0018 17.6 0.0 0.0028 17.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain DUF4321 PF14209.1 gi|330834473|ref|YP_004409201.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4321) Hexapep PF00132.19 gi|330834474|ref|YP_004409202.1| - 1.1e-14 53.1 21.3 2e-09 36.5 5.5 3.1 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|330834474|ref|YP_004409202.1| - 2.4e-09 36.5 16.0 1.9e-05 24.1 3.6 3.1 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase S4_2 PF13275.1 gi|330834474|ref|YP_004409202.1| - 0.048 13.2 0.1 0.18 11.4 0.0 2.0 2 1 0 2 2 2 0 S4 domain Ribosomal_L27 PF01016.14 gi|330834474|ref|YP_004409202.1| - 0.21 11.3 0.3 0.21 11.3 0.2 1.7 2 0 0 2 2 2 0 Ribosomal L27 protein HupF_HypC PF01455.13 gi|330834474|ref|YP_004409202.1| - 0.28 11.1 2.7 19 5.3 0.1 3.2 2 1 1 3 3 3 0 HupF/HypC family AMP-binding PF00501.23 gi|330834475|ref|YP_004409203.1| - 1e-58 198.7 0.0 1.4e-58 198.3 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330834475|ref|YP_004409203.1| - 5.1e-07 30.5 0.0 1.5e-06 29.0 0.0 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thioredoxin PF00085.15 gi|330834476|ref|YP_004409204.1| - 5.2e-24 83.9 0.1 7.5e-24 83.4 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|330834476|ref|YP_004409204.1| - 9e-09 35.5 1.6 5.4e-08 33.0 0.2 2.4 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|330834476|ref|YP_004409204.1| - 2.2e-07 30.9 1.1 3.1e-05 23.9 0.0 2.6 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|330834476|ref|YP_004409204.1| - 6.4e-07 29.0 0.5 1.2e-05 24.9 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin domain AhpC-TSA PF00578.16 gi|330834476|ref|YP_004409204.1| - 0.00011 21.8 0.1 0.0062 16.2 0.0 2.2 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_9 PF14595.1 gi|330834476|ref|YP_004409204.1| - 0.00044 19.8 0.1 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|330834476|ref|YP_004409204.1| - 0.0013 18.6 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.5 gi|330834476|ref|YP_004409204.1| - 0.0034 16.9 0.4 0.012 15.1 0.2 1.9 1 1 1 2 2 2 1 Redoxin DSBA PF01323.15 gi|330834476|ref|YP_004409204.1| - 0.026 14.0 3.7 0.17 11.4 0.0 2.4 2 1 1 3 3 3 0 DSBA-like thioredoxin domain DIM1 PF02966.11 gi|330834476|ref|YP_004409204.1| - 0.039 13.4 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 Mitosis protein DIM1 MSC PF09402.5 gi|330834476|ref|YP_004409204.1| - 0.057 12.1 0.1 0.073 11.7 0.1 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain HyaE PF07449.6 gi|330834476|ref|YP_004409204.1| - 0.092 12.6 0.0 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE IF2_N PF04760.10 gi|330834476|ref|YP_004409204.1| - 0.11 12.2 1.5 2.9 7.6 0.3 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region ABC_tran PF00005.22 gi|330834477|ref|YP_004409205.1| - 1.7e-23 83.4 0.0 2.2e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834477|ref|YP_004409205.1| - 4.3e-09 36.7 1.4 0.0011 19.0 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|330834477|ref|YP_004409205.1| - 2.6e-06 27.1 0.0 3.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|330834477|ref|YP_004409205.1| - 9.5e-06 24.6 0.0 1.4e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|330834477|ref|YP_004409205.1| - 1.7e-05 24.9 0.3 8.6e-05 22.6 0.2 1.9 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330834477|ref|YP_004409205.1| - 4.6e-05 23.0 0.1 0.15 11.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|330834477|ref|YP_004409205.1| - 9.1e-05 22.8 1.1 9.1e-05 22.8 0.8 1.9 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|330834477|ref|YP_004409205.1| - 9.5e-05 22.2 0.6 0.019 14.8 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330834477|ref|YP_004409205.1| - 0.00013 22.7 0.0 0.00018 22.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zot PF05707.7 gi|330834477|ref|YP_004409205.1| - 0.00023 20.6 0.1 0.081 12.3 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|330834477|ref|YP_004409205.1| - 0.00027 20.9 0.2 0.00043 20.3 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain PIF1 PF05970.9 gi|330834477|ref|YP_004409205.1| - 0.00033 19.7 0.6 0.32 9.8 0.1 2.1 1 1 1 2 2 2 2 PIF1-like helicase MobB PF03205.9 gi|330834477|ref|YP_004409205.1| - 0.00061 19.5 0.6 0.0015 18.1 0.1 1.9 2 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|330834477|ref|YP_004409205.1| - 0.00066 19.3 0.0 0.0015 18.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|330834477|ref|YP_004409205.1| - 0.0011 18.4 0.0 0.0023 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330834477|ref|YP_004409205.1| - 0.0014 17.7 0.5 0.0023 17.0 0.2 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|330834477|ref|YP_004409205.1| - 0.002 17.6 0.1 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|330834477|ref|YP_004409205.1| - 0.0028 17.3 0.2 0.013 15.2 0.1 2.0 2 0 0 2 2 2 1 NTPase NACHT PF05729.7 gi|330834477|ref|YP_004409205.1| - 0.0058 16.3 0.4 0.017 14.7 0.1 1.8 2 0 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|330834477|ref|YP_004409205.1| - 0.0065 16.6 0.7 0.057 13.6 0.5 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|330834477|ref|YP_004409205.1| - 0.0083 16.4 0.4 0.018 15.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|330834477|ref|YP_004409205.1| - 0.0085 16.0 0.1 0.015 15.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|330834477|ref|YP_004409205.1| - 0.0089 15.4 0.5 0.024 14.0 0.1 1.7 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|330834477|ref|YP_004409205.1| - 0.015 14.9 0.4 0.032 13.9 0.3 1.6 1 1 0 1 1 1 0 Archaeal ATPase DUF258 PF03193.11 gi|330834477|ref|YP_004409205.1| - 0.021 14.0 0.2 0.032 13.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|330834477|ref|YP_004409205.1| - 0.022 14.1 0.3 0.043 13.2 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|330834477|ref|YP_004409205.1| - 0.029 13.2 0.8 0.52 9.1 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain SMC_N PF02463.14 gi|330834477|ref|YP_004409205.1| - 0.048 12.8 1.4 0.11 11.7 0.2 1.9 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain KAP_NTPase PF07693.9 gi|330834477|ref|YP_004409205.1| - 0.078 11.9 0.0 0.09 11.7 0.0 1.2 1 1 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.9 gi|330834477|ref|YP_004409205.1| - 0.079 12.6 0.1 0.95 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|330834477|ref|YP_004409205.1| - 0.085 12.7 0.0 0.11 12.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|330834477|ref|YP_004409205.1| - 0.091 11.3 1.3 0.14 10.7 0.9 1.5 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_13 PF13166.1 gi|330834477|ref|YP_004409205.1| - 0.091 11.2 0.0 0.14 10.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|330834477|ref|YP_004409205.1| - 0.12 12.3 0.2 0.23 11.4 0.1 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase Gln-synt_C PF00120.19 gi|330834478|ref|YP_004409206.1| - 6.1e-97 323.8 0.0 7.4e-97 323.5 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|330834478|ref|YP_004409206.1| - 2.4e-23 81.5 0.0 4.9e-23 80.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GTP_cyclohydroI PF01227.17 gi|330834479|ref|YP_004409207.1| - 4.5e-62 208.5 0.0 5.2e-62 208.3 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I FlpD PF02662.11 gi|330834479|ref|YP_004409207.1| - 0.0067 16.1 0.1 0.24 11.0 0.0 2.3 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Peptidase_M24 PF00557.19 gi|330834480|ref|YP_004409208.1| - 2.5e-61 206.8 0.9 3.9e-61 206.2 0.6 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|330834480|ref|YP_004409208.1| - 0.0015 19.0 0.0 0.0028 18.1 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Mob_synth_C PF06463.8 gi|330834481|ref|YP_004409209.1| - 7.4e-27 93.5 0.0 1.4e-26 92.6 0.0 1.5 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|330834481|ref|YP_004409209.1| - 1.6e-25 90.2 0.3 6.4e-25 88.2 0.0 2.0 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330834481|ref|YP_004409209.1| - 2.8e-05 24.2 0.0 9.7e-05 22.5 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330834481|ref|YP_004409209.1| - 8.9e-05 22.5 0.1 0.00032 20.7 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.1 gi|330834482|ref|YP_004409210.1| - 0.0048 16.0 0.0 0.0059 15.7 0.0 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330834482|ref|YP_004409210.1| - 0.0088 15.3 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-ZPR1 PF03367.8 gi|330834482|ref|YP_004409210.1| - 0.037 13.1 0.1 0.037 13.1 0.1 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain GFA PF04828.9 gi|330834482|ref|YP_004409210.1| - 0.078 12.9 0.0 0.083 12.8 0.0 1.1 1 0 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|330834482|ref|YP_004409210.1| - 0.088 12.7 0.2 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|330834482|ref|YP_004409210.1| - 0.11 12.0 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|330834482|ref|YP_004409210.1| - 0.12 12.2 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-GRF PF06839.7 gi|330834482|ref|YP_004409210.1| - 0.13 12.2 0.1 0.17 11.8 0.1 1.3 1 0 0 1 1 1 0 GRF zinc finger zf-CSL PF05207.8 gi|330834482|ref|YP_004409210.1| - 0.14 11.6 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 CSL zinc finger DNA_ligase_ZBD PF03119.11 gi|330834482|ref|YP_004409210.1| - 0.15 11.7 2.0 0.31 10.7 0.1 2.2 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain WaaY PF06176.6 gi|330834483|ref|YP_004409211.1| - 0.12 11.6 1.1 0.97 8.6 0.7 2.4 1 1 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) PALP PF00291.20 gi|330834484|ref|YP_004409212.1| - 1.6e-48 165.5 0.0 1.9e-48 165.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CbiG_N PF11760.3 gi|330834484|ref|YP_004409212.1| - 0.028 14.1 0.0 1.6 8.4 0.0 2.4 1 1 1 2 2 2 0 Cobalamin synthesis G N-terminal TusA PF01206.12 gi|330834485|ref|YP_004409213.1| - 1.4e-10 40.5 0.1 1.8e-10 40.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Nucleoporin2 PF04096.9 gi|330834485|ref|YP_004409213.1| - 0.031 14.0 0.0 0.031 14.0 0.0 1.1 1 0 0 1 1 1 0 Nucleoporin autopeptidase SH3_5 PF08460.5 gi|330834485|ref|YP_004409213.1| - 0.077 12.9 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial SH3 domain DUF523 PF04463.7 gi|330834485|ref|YP_004409213.1| - 0.13 12.0 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF523) DrsE_2 PF13686.1 gi|330834486|ref|YP_004409214.1| - 7.3e-13 48.5 0.2 4.7e-12 45.9 0.1 1.8 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family Hexapep PF00132.19 gi|330834487|ref|YP_004409215.1| - 3.6e-16 57.8 10.8 5e-05 22.6 0.0 4.3 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|330834487|ref|YP_004409215.1| - 9.6e-12 44.7 0.1 2.6e-10 40.0 0.0 2.1 1 1 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330834487|ref|YP_004409215.1| - 2.3e-10 40.7 0.0 2.9e-10 40.4 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|330834487|ref|YP_004409215.1| - 0.00028 20.3 6.8 0.54 9.8 0.5 4.5 2 1 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|330834487|ref|YP_004409215.1| - 0.015 14.8 0.1 0.023 14.1 0.1 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.7 gi|330834487|ref|YP_004409215.1| - 0.018 13.6 2.4 0.069 11.7 0.2 2.1 1 1 1 2 2 2 0 L-fucokinase SIS PF01380.17 gi|330834488|ref|YP_004409216.1| - 4.7e-39 132.9 2.9 8.8e-21 73.8 0.6 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.1 gi|330834488|ref|YP_004409216.1| - 2e-22 79.6 0.0 5.7e-22 78.1 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|330834488|ref|YP_004409216.1| - 3e-18 65.6 0.1 1e-13 50.7 0.0 2.2 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|330834488|ref|YP_004409216.1| - 2.7e-15 56.2 0.0 7.3e-15 54.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|330834488|ref|YP_004409216.1| - 0.00041 19.1 0.1 0.00062 18.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|330834488|ref|YP_004409216.1| - 0.011 15.4 0.2 0.056 13.1 0.0 2.1 1 1 1 2 2 2 0 SIS domain VWA_2 PF13519.1 gi|330834488|ref|YP_004409216.1| - 0.019 15.0 0.1 0.15 12.1 0.1 2.1 2 0 0 2 2 2 0 von Willebrand factor type A domain ApbA PF02558.11 gi|330834488|ref|YP_004409216.1| - 0.11 11.8 0.4 3.6 7.0 0.0 3.0 3 1 0 3 3 3 0 Ketopantoate reductase PanE/ApbA GHMP_kinases_N PF00288.21 gi|330834489|ref|YP_004409217.1| - 4.5e-10 39.4 0.7 1.1e-09 38.2 0.1 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330834489|ref|YP_004409217.1| - 8.2e-10 38.7 0.1 1.9e-09 37.5 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal V-SNARE PF05008.10 gi|330834489|ref|YP_004409217.1| - 0.0029 17.7 0.2 0.033 14.3 0.0 2.3 2 0 0 2 2 2 1 Vesicle transport v-SNARE protein N-terminus RICTOR_N PF14664.1 gi|330834489|ref|YP_004409217.1| - 0.0056 15.3 0.1 0.009 14.6 0.0 1.3 1 0 0 1 1 1 1 Rapamycin-insensitive companion of mTOR, N-term DUF1664 PF07889.7 gi|330834489|ref|YP_004409217.1| - 0.067 12.9 4.2 0.27 11.0 0.4 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) tRNA-Thr_ED PF08915.6 gi|330834490|ref|YP_004409218.1| - 1.1e-51 174.4 0.1 1.8e-51 173.7 0.1 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|330834490|ref|YP_004409218.1| - 4.4e-18 64.9 2.4 5.8e-18 64.6 0.7 1.9 2 0 0 2 2 2 1 Anticodon binding domain Glycoamylase PF10091.4 gi|330834490|ref|YP_004409218.1| - 0.00071 18.7 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Putative glucoamylase RNA_binding PF01877.12 gi|330834490|ref|YP_004409218.1| - 0.083 12.9 0.6 0.22 11.5 0.1 1.9 2 0 0 2 2 2 0 RNA binding Sigma70_r1_1 PF03979.9 gi|330834490|ref|YP_004409218.1| - 0.086 12.7 3.0 1.5 8.8 0.1 2.8 3 0 0 3 3 3 0 Sigma-70 factor, region 1.1 Cellulase PF00150.13 gi|330834490|ref|YP_004409218.1| - 0.13 11.4 0.0 0.67 9.0 0.0 2.0 1 1 1 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Beta-Casp PF10996.3 gi|330834491|ref|YP_004409219.1| - 2.2e-25 88.9 0.0 5.8e-25 87.6 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B_2 PF12706.2 gi|330834491|ref|YP_004409219.1| - 2.2e-12 46.9 0.0 3.9e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330834491|ref|YP_004409219.1| - 3.1e-10 40.0 0.0 7.8e-10 38.7 0.0 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|330834491|ref|YP_004409219.1| - 1.3e-08 34.4 0.0 3.1e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase PDEase_II PF02112.10 gi|330834491|ref|YP_004409219.1| - 0.00096 18.1 0.1 0.0014 17.6 0.0 1.3 1 0 0 1 1 1 1 cAMP phosphodiesterases class-II Arg_repressor_C PF02863.13 gi|330834491|ref|YP_004409219.1| - 0.088 12.2 0.0 2.6 7.5 0.0 2.6 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain UBA PF00627.26 gi|330834492|ref|YP_004409220.1| - 9.6e-07 28.4 0.2 2.1e-05 24.2 0.0 2.4 2 1 0 2 2 2 1 UBA/TS-N domain NAC PF01849.13 gi|330834492|ref|YP_004409220.1| - 8.4e-06 25.2 2.3 1.2e-05 24.7 0.7 1.9 2 0 0 2 2 2 1 NAC domain CUE PF02845.11 gi|330834492|ref|YP_004409220.1| - 0.002 17.5 0.0 0.0095 15.4 0.0 1.9 1 1 1 2 2 2 1 CUE domain CLP_protease PF00574.18 gi|330834492|ref|YP_004409220.1| - 0.019 14.6 0.3 0.026 14.1 0.2 1.2 1 0 0 1 1 1 0 Clp protease UPF0154 PF03672.8 gi|330834492|ref|YP_004409220.1| - 0.048 13.2 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) DUF59 PF01883.14 gi|330834492|ref|YP_004409220.1| - 0.068 13.1 1.3 1.6 8.7 0.9 2.5 1 1 0 1 1 1 0 Domain of unknown function DUF59 Sigma70_r3 PF04539.11 gi|330834492|ref|YP_004409220.1| - 0.082 12.8 0.4 3.3 7.6 0.1 2.4 1 1 1 2 2 2 0 Sigma-70 region 3 DEDD_Tnp_IS110 PF01548.12 gi|330834492|ref|YP_004409220.1| - 0.11 12.1 0.1 1.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Transposase HTH_19 PF12844.2 gi|330834493|ref|YP_004409221.1| - 1.7e-08 34.4 0.1 3.2e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330834493|ref|YP_004409221.1| - 1.7e-08 34.1 0.2 3.2e-08 33.2 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|330834493|ref|YP_004409221.1| - 4.8e-05 23.4 0.1 7.6e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|330834493|ref|YP_004409221.1| - 0.094 12.3 0.2 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TPP_enzyme_C PF02775.16 gi|330834494|ref|YP_004409222.1| - 1.8e-19 69.8 0.0 5.3e-19 68.2 0.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.14 gi|330834494|ref|YP_004409222.1| - 7.7e-14 51.7 0.9 2e-13 50.3 0.3 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.22 gi|330834494|ref|YP_004409222.1| - 3.1e-11 42.3 14.6 1.5e-08 33.9 4.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834494|ref|YP_004409222.1| - 1.4e-10 40.7 22.4 4.6e-07 29.5 8.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834494|ref|YP_004409222.1| - 6.7e-09 35.1 14.6 3.1e-06 26.7 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain TPP_enzyme_N PF02776.13 gi|330834494|ref|YP_004409222.1| - 1.7e-07 30.8 1.1 0.0059 16.1 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_7 PF12838.2 gi|330834494|ref|YP_004409222.1| - 2.3e-07 31.0 13.6 1.3e-06 28.6 0.7 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834494|ref|YP_004409222.1| - 2.4e-07 30.2 21.6 4.1e-06 26.4 3.4 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330834494|ref|YP_004409222.1| - 3.5e-06 26.7 13.3 1.7e-05 24.6 8.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330834494|ref|YP_004409222.1| - 2e-05 24.7 11.6 5.1e-05 23.4 8.1 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330834494|ref|YP_004409222.1| - 7.4e-05 22.6 10.4 0.00023 21.1 7.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330834494|ref|YP_004409222.1| - 0.00011 22.6 11.0 0.0053 17.2 1.3 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|330834494|ref|YP_004409222.1| - 0.00033 21.3 6.9 0.00094 19.8 0.6 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330834494|ref|YP_004409222.1| - 0.0012 19.1 8.7 0.0059 16.9 0.8 2.5 1 1 2 3 3 3 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330834494|ref|YP_004409222.1| - 0.0012 18.6 3.5 0.037 13.9 3.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330834494|ref|YP_004409222.1| - 0.0039 17.3 4.0 0.0039 17.3 2.8 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330834494|ref|YP_004409222.1| - 0.0052 17.1 12.6 0.19 12.1 0.8 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330834494|ref|YP_004409222.1| - 0.0076 16.7 8.1 0.0076 16.7 5.6 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain E1_dh PF00676.15 gi|330834494|ref|YP_004409222.1| - 0.013 14.2 0.0 0.035 12.8 0.0 1.7 2 0 0 2 2 2 0 Dehydrogenase E1 component Transketolase_C PF02780.15 gi|330834494|ref|YP_004409222.1| - 0.062 13.2 0.1 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Transketolase, C-terminal domain Fer4_18 PF13746.1 gi|330834494|ref|YP_004409222.1| - 0.59 10.5 14.7 0.11 12.9 3.1 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|330834495|ref|YP_004409223.1| - 1.1e-26 93.8 0.0 1.3e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Cob_adeno_trans PF01923.13 gi|330834496|ref|YP_004409224.1| - 4.9e-49 166.2 0.0 5.5e-49 166.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase NYD-SP28_assoc PF14775.1 gi|330834497|ref|YP_004409225.1| - 0.17 11.5 0.7 0.35 10.6 0.5 1.4 1 0 0 1 1 1 0 Sperm tail C-terminal domain DUF3224 PF11528.3 gi|330834498|ref|YP_004409226.1| - 0.14 11.6 0.1 0.16 11.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3224) PsiE PF06146.7 gi|330834501|ref|YP_004409229.1| - 0.0074 16.5 4.8 0.0074 16.5 3.3 2.3 3 0 0 3 3 3 1 Phosphate-starvation-inducible E DUF3959 PF13105.1 gi|330834501|ref|YP_004409229.1| - 0.022 14.1 2.9 0.024 13.9 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3959) DUF3821 PF12863.2 gi|330834502|ref|YP_004409230.1| - 0.0085 15.7 0.3 0.014 15.0 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3821) Transposase_22 PF02994.9 gi|330834502|ref|YP_004409230.1| - 0.032 12.7 0.3 0.042 12.3 0.2 1.1 1 0 0 1 1 1 0 L1 transposable element Glycos_transf_1 PF00534.15 gi|330834503|ref|YP_004409231.1| - 1.5e-33 115.6 0.0 2.8e-33 114.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330834503|ref|YP_004409231.1| - 1.4e-11 44.6 0.0 3.2e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.16 gi|330834503|ref|YP_004409231.1| - 6e-06 25.0 1.4 0.057 11.8 0.0 3.0 2 1 1 3 3 3 3 Glycosyltransferase family 20 Glyco_trans_1_2 PF13524.1 gi|330834503|ref|YP_004409231.1| - 0.0085 16.3 0.0 0.024 14.8 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 Usp PF00582.21 gi|330834504|ref|YP_004409232.1| - 4.6e-37 127.3 0.5 5.1e-37 127.1 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|330834504|ref|YP_004409232.1| - 0.041 13.1 0.0 0.052 12.8 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MMR_HSR1_C PF08438.5 gi|330834505|ref|YP_004409233.1| - 0.17 12.1 0.9 0.45 10.7 0.6 1.7 1 1 0 1 1 1 0 GTPase of unknown function C-terminal zf-C4H2 PF10146.4 gi|330834505|ref|YP_004409233.1| - 6 6.8 7.1 6.6 6.6 4.5 1.4 1 1 0 1 1 1 0 Zinc finger-containing protein DNA_binding_1 PF01035.15 gi|330834507|ref|YP_004409235.1| - 1.6e-27 95.0 0.0 2e-27 94.7 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.7 gi|330834507|ref|YP_004409235.1| - 0.012 15.0 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|330834507|ref|YP_004409235.1| - 0.037 13.5 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|330834507|ref|YP_004409235.1| - 0.1 12.0 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.1 gi|330834507|ref|YP_004409235.1| - 0.14 11.3 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 tRNA-synt_2b PF00587.20 gi|330834508|ref|YP_004409236.1| - 1.6e-41 141.7 0.1 2.8e-41 140.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330834508|ref|YP_004409236.1| - 4.4e-19 68.2 0.3 1.1e-18 66.8 0.2 1.8 1 0 0 1 1 1 1 Anticodon binding domain Glyco_tran_28_C PF04101.11 gi|330834509|ref|YP_004409237.1| - 5.5e-07 29.3 0.0 1.6e-06 27.9 0.0 1.8 2 1 0 2 2 2 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.1 gi|330834509|ref|YP_004409237.1| - 4e-06 26.2 0.0 6.8e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferase family 1 Alg14 PF08660.6 gi|330834509|ref|YP_004409237.1| - 0.00051 20.0 0.0 0.001 19.0 0.0 1.5 1 0 0 1 1 1 1 Oligosaccharide biosynthesis protein Alg14 like HhH-GPD PF00730.20 gi|330834510|ref|YP_004409238.1| - 2.2e-09 37.5 0.0 2.7e-09 37.2 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|330834510|ref|YP_004409238.1| - 0.0014 18.1 0.3 0.0077 15.8 0.0 2.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330834510|ref|YP_004409238.1| - 0.0021 18.1 0.1 0.0093 16.1 0.1 2.0 1 1 0 1 1 1 1 Helix-hairpin-helix domain EndIII_4Fe-2S PF10576.4 gi|330834510|ref|YP_004409238.1| - 0.15 12.3 4.0 0.24 11.6 2.8 1.3 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III ATP-grasp_2 PF08442.5 gi|330834511|ref|YP_004409239.1| - 1.9e-25 89.4 2.1 4e-24 85.1 0.8 3.0 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|330834511|ref|YP_004409239.1| - 7.2e-16 58.1 0.8 1.1e-15 57.5 0.6 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.1 gi|330834511|ref|YP_004409239.1| - 9.7e-09 34.7 0.0 5.2e-05 22.5 0.0 3.8 3 1 0 3 3 3 2 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330834511|ref|YP_004409239.1| - 0.054 12.7 0.0 0.09 12.0 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CoA_binding PF02629.14 gi|330834512|ref|YP_004409240.1| - 6.9e-23 80.9 7.2 1.1e-22 80.3 0.4 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|330834512|ref|YP_004409240.1| - 1.3e-15 57.2 1.2 2.1e-15 56.6 0.8 1.3 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.1 gi|330834512|ref|YP_004409240.1| - 2e-11 44.0 0.3 6.4e-09 35.9 0.0 2.2 2 0 0 2 2 2 2 CoA binding domain Succ_CoA_lig PF13607.1 gi|330834512|ref|YP_004409240.1| - 7.2e-09 35.3 0.1 1.6e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain GFO_IDH_MocA PF01408.17 gi|330834512|ref|YP_004409240.1| - 0.0053 17.2 0.1 0.029 14.8 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Endonuc_subdom PF09062.5 gi|330834513|ref|YP_004409241.1| - 0.14 12.9 0.0 0.16 12.7 0.0 1.1 1 0 0 1 1 1 0 PI-PfuI Endonuclease subdomain PNP_UDP_1 PF01048.15 gi|330834515|ref|YP_004409243.1| - 6.5e-39 133.2 0.0 7.1e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HD PF01966.17 gi|330834516|ref|YP_004409244.1| - 1.5e-10 41.1 0.2 6e-10 39.1 0.1 2.1 2 0 0 2 2 2 1 HD domain GHMP_kinases_N PF00288.21 gi|330834517|ref|YP_004409245.1| - 5.8e-10 39.1 2.8 1.2e-09 38.0 1.9 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_N PF00288.21 gi|330834518|ref|YP_004409246.1| - 1.3e-12 47.5 0.1 2.7e-12 46.5 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330834518|ref|YP_004409246.1| - 1e-07 32.0 0.0 2.7e-07 30.6 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal SpoVIF PF14069.1 gi|330834519|ref|YP_004409247.1| - 0.025 14.3 1.4 1.1 9.0 0.1 2.6 2 0 0 2 2 2 0 Stage VI sporulation protein F FAD_binding_1 PF00667.15 gi|330834519|ref|YP_004409247.1| - 0.031 13.7 3.0 0.11 11.8 0.2 2.1 1 1 1 2 2 2 0 FAD binding domain DUF3677 PF12432.3 gi|330834519|ref|YP_004409247.1| - 0.066 13.6 2.3 1.4 9.4 0.3 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3677) TAFH PF07531.9 gi|330834519|ref|YP_004409247.1| - 0.37 10.4 3.5 0.79 9.3 0.4 2.6 1 1 1 3 3 3 0 NHR1 homology to TAF HTH_45 PF14947.1 gi|330834520|ref|YP_004409248.1| - 3.6e-24 84.3 0.2 4.4e-24 84.1 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|330834520|ref|YP_004409248.1| - 0.041 13.5 0.2 0.077 12.6 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Mrr_N PF14338.1 gi|330834520|ref|YP_004409248.1| - 0.055 13.5 0.0 0.18 11.9 0.0 1.7 1 1 1 2 2 2 0 Mrr N-terminal domain Halogen_Hydrol PF10112.4 gi|330834521|ref|YP_004409249.1| - 0.037 13.4 0.7 0.068 12.5 0.1 1.8 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2304 PF10066.4 gi|330834521|ref|YP_004409249.1| - 1.8 8.4 8.4 0.23 11.3 0.9 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) DUF4116 PF13475.1 gi|330834522|ref|YP_004409250.1| - 0.069 12.6 0.5 0.46 10.0 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4116) GCV_H PF01597.14 gi|330834523|ref|YP_004409251.1| - 1e-28 99.4 0.1 1.2e-28 99.2 0.0 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|330834523|ref|YP_004409251.1| - 0.00036 20.1 0.1 0.00057 19.4 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme HAD_2 PF13419.1 gi|330834524|ref|YP_004409252.1| - 3e-08 34.1 0.0 4.2e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330834524|ref|YP_004409252.1| - 0.0034 17.8 0.0 0.004 17.5 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase QueC PF06508.8 gi|330834525|ref|YP_004409253.1| - 2.1e-22 79.4 0.3 3e-21 75.6 0.2 1.9 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ODC_AZ PF02100.12 gi|330834526|ref|YP_004409254.1| - 0.018 14.5 0.0 0.026 13.9 0.0 1.3 1 0 0 1 1 1 0 Ornithine decarboxylase antizyme Syntaxin-6_N PF09177.6 gi|330834526|ref|YP_004409254.1| - 0.079 13.3 0.2 0.24 11.8 0.1 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DUF1886 PF09171.5 gi|330834526|ref|YP_004409254.1| - 0.11 11.5 0.4 0.11 11.4 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) TrmB PF01978.14 gi|330834527|ref|YP_004409255.1| - 4.2e-15 55.2 0.0 6.1e-15 54.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330834527|ref|YP_004409255.1| - 2.9e-09 36.4 0.0 5.1e-09 35.6 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330834527|ref|YP_004409255.1| - 7.3e-09 35.2 0.0 1.2e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330834527|ref|YP_004409255.1| - 5.5e-07 28.8 0.1 8.6e-07 28.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|330834527|ref|YP_004409255.1| - 2.6e-06 27.6 0.0 8.5e-06 26.0 0.0 1.8 1 1 1 2 2 2 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|330834527|ref|YP_004409255.1| - 2.2e-05 23.8 0.0 3e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|330834527|ref|YP_004409255.1| - 0.00015 21.3 0.0 0.00028 20.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|330834527|ref|YP_004409255.1| - 0.00046 20.0 0.0 0.00082 19.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|330834527|ref|YP_004409255.1| - 0.0051 16.5 0.0 0.011 15.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|330834527|ref|YP_004409255.1| - 0.0054 16.2 0.0 0.0097 15.4 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_34 PF13601.1 gi|330834527|ref|YP_004409255.1| - 0.014 15.3 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|330834527|ref|YP_004409255.1| - 0.015 14.8 0.0 0.019 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Mga PF05043.8 gi|330834527|ref|YP_004409255.1| - 0.023 14.9 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 Mga helix-turn-helix domain GntR PF00392.16 gi|330834527|ref|YP_004409255.1| - 0.028 13.8 0.0 0.069 12.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_9 PF08221.6 gi|330834527|ref|YP_004409255.1| - 0.036 13.9 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_IclR PF09339.5 gi|330834527|ref|YP_004409255.1| - 0.037 13.6 0.0 0.061 12.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330834527|ref|YP_004409255.1| - 0.038 13.7 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2250 PF10007.4 gi|330834527|ref|YP_004409255.1| - 0.045 13.6 0.0 0.091 12.6 0.0 1.5 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|330834527|ref|YP_004409255.1| - 0.056 13.0 0.1 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 HTH domain tRNA_synt_1c_R2 PF04557.10 gi|330834527|ref|YP_004409255.1| - 0.079 13.6 0.0 0.096 13.3 0.0 1.3 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 HTH_36 PF13730.1 gi|330834527|ref|YP_004409255.1| - 0.083 13.0 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HRDC PF00570.18 gi|330834527|ref|YP_004409255.1| - 0.087 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 HRDC domain HTH_29 PF13551.1 gi|330834527|ref|YP_004409255.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix TusA PF01206.12 gi|330834528|ref|YP_004409256.1| - 2.9e-14 52.4 0.2 3.3e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA TrmB PF01978.14 gi|330834529|ref|YP_004409257.1| - 0.002 17.8 0.0 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|330834529|ref|YP_004409257.1| - 0.01 15.2 0.1 0.034 13.5 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|330834529|ref|YP_004409257.1| - 0.011 16.0 0.0 0.014 15.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|330834529|ref|YP_004409257.1| - 0.019 14.6 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|330834529|ref|YP_004409257.1| - 0.019 14.6 0.0 0.019 14.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_36 PF13730.1 gi|330834529|ref|YP_004409257.1| - 0.033 14.2 0.1 0.055 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|330834529|ref|YP_004409257.1| - 0.039 13.5 0.1 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 HTH domain DUF387 PF04079.11 gi|330834529|ref|YP_004409257.1| - 0.044 13.1 0.0 0.047 13.0 0.0 1.1 1 0 0 1 1 1 0 Putative transcriptional regulators (Ypuh-like) CoA_binding_2 PF13380.1 gi|330834530|ref|YP_004409258.1| - 6.9e-34 116.4 0.0 8.3e-34 116.2 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|330834530|ref|YP_004409258.1| - 0.00058 20.3 0.0 0.00087 19.7 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain MerC PF03203.9 gi|330834531|ref|YP_004409259.1| - 0.076 13.3 1.7 0.19 12.0 1.2 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein BPL_LplA_LipB PF03099.14 gi|330834532|ref|YP_004409260.1| - 1.2e-12 47.9 0.0 1.9e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|330834532|ref|YP_004409260.1| - 0.021 14.5 0.2 0.39 10.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Meckelin PF09773.4 gi|330834532|ref|YP_004409260.1| - 0.077 10.7 0.1 0.1 10.3 0.1 1.1 1 0 0 1 1 1 0 Meckelin (Transmembrane protein 67) Radical_SAM PF04055.16 gi|330834533|ref|YP_004409261.1| - 1e-07 32.2 0.0 2.1e-07 31.2 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330834533|ref|YP_004409261.1| - 0.0028 17.7 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330834533|ref|YP_004409261.1| - 0.055 13.4 0.0 0.093 12.7 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|330834534|ref|YP_004409262.1| - 9.8e-12 45.3 1.0 1.6e-11 44.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily Toxin_42 PF15522.1 gi|330834534|ref|YP_004409262.1| - 0.04 13.1 0.0 0.063 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative toxin 42 Fer4_12 PF13353.1 gi|330834534|ref|YP_004409262.1| - 0.15 12.1 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Hist_deacetyl PF00850.14 gi|330834536|ref|YP_004409264.1| - 9e-50 169.7 0.0 1.3e-49 169.1 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain DUF1938 PF09153.5 gi|330834536|ref|YP_004409264.1| - 0.044 13.5 0.2 0.12 12.2 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1938) DUF1641 PF07849.6 gi|330834537|ref|YP_004409265.1| - 1.1e-12 47.3 0.1 3.9e-12 45.5 0.1 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) MgtE_N PF03448.12 gi|330834537|ref|YP_004409265.1| - 1.1e-05 25.6 30.4 0.1 12.9 0.4 6.1 3 2 1 5 5 5 4 MgtE intracellular N domain Imm16 PF15565.1 gi|330834537|ref|YP_004409265.1| - 0.00017 21.4 4.0 0.0011 18.8 0.6 3.4 2 1 0 3 3 3 1 Immunity protein 16 UCR_Fe-S_N PF10399.4 gi|330834537|ref|YP_004409265.1| - 0.095 11.8 0.1 14 4.9 0.0 2.4 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal UPF0278 PF08745.6 gi|330834538|ref|YP_004409266.1| - 0.0011 18.3 0.1 0.0014 17.9 0.0 1.2 1 0 0 1 1 1 1 UPF0278 family YXWGXW PF12779.2 gi|330834538|ref|YP_004409266.1| - 0.11 12.3 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 YXWGXW repeat (2 copies) Thioredoxin_3 PF13192.1 gi|330834539|ref|YP_004409267.1| - 6.4e-15 54.7 0.2 1.2e-14 53.8 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|330834539|ref|YP_004409267.1| - 0.00036 20.7 0.0 0.00057 20.0 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|330834539|ref|YP_004409267.1| - 0.0013 18.6 0.5 0.004 17.1 0.2 1.8 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin PF00085.15 gi|330834539|ref|YP_004409267.1| - 0.0041 16.7 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|330834539|ref|YP_004409267.1| - 0.024 14.8 0.4 0.097 12.8 0.3 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain HTH_16 PF12645.2 gi|330834540|ref|YP_004409268.1| - 0.016 15.1 0.0 0.024 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Pyr_redox_2 PF07992.9 gi|330834541|ref|YP_004409269.1| - 1e-31 110.3 8.3 6e-31 107.8 5.8 3.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330834541|ref|YP_004409269.1| - 7.6e-15 54.8 0.0 1.6e-14 53.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|330834541|ref|YP_004409269.1| - 1.2e-14 54.4 5.6 4e-11 43.1 0.0 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330834541|ref|YP_004409269.1| - 1.7e-09 38.0 0.0 5e-09 36.5 0.0 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330834541|ref|YP_004409269.1| - 2.8e-09 36.3 4.2 0.00062 18.7 0.2 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A DAO PF01266.19 gi|330834541|ref|YP_004409269.1| - 2.7e-08 33.1 5.2 0.001 18.0 0.0 3.0 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330834541|ref|YP_004409269.1| - 1.2e-07 30.9 7.2 0.00013 20.9 1.5 2.8 3 0 0 3 3 3 2 FAD binding domain FAD_oxidored PF12831.2 gi|330834541|ref|YP_004409269.1| - 5.6e-07 28.9 3.7 0.00011 21.4 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|330834541|ref|YP_004409269.1| - 1.7e-06 27.3 3.9 0.00036 19.6 0.7 2.2 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.9 gi|330834541|ref|YP_004409269.1| - 4.8e-06 25.4 2.5 8.9e-05 21.2 0.1 2.3 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.9 gi|330834541|ref|YP_004409269.1| - 1.1e-05 24.1 4.6 0.018 13.5 0.7 3.1 3 0 0 3 3 3 2 HI0933-like protein Thi4 PF01946.12 gi|330834541|ref|YP_004409269.1| - 3.7e-05 22.9 2.5 0.0012 17.9 0.6 2.5 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.1 gi|330834541|ref|YP_004409269.1| - 0.00046 20.4 0.4 0.66 10.2 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|330834541|ref|YP_004409269.1| - 0.00097 18.8 1.6 0.024 14.2 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|330834541|ref|YP_004409269.1| - 0.0011 18.5 0.9 0.018 14.5 0.0 2.3 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain K_oxygenase PF13434.1 gi|330834541|ref|YP_004409269.1| - 0.0018 17.2 0.0 0.042 12.7 0.0 2.2 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.1 gi|330834541|ref|YP_004409269.1| - 0.002 18.1 9.7 0.14 12.1 2.2 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pox_vIL-18BP PF05566.7 gi|330834541|ref|YP_004409269.1| - 0.036 14.0 0.0 0.078 12.9 0.0 1.5 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein Lycopene_cycl PF05834.7 gi|330834541|ref|YP_004409269.1| - 0.059 12.2 0.3 1 8.1 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_Gly3P_dh_N PF01210.18 gi|330834541|ref|YP_004409269.1| - 0.1 12.3 1.6 7.2 6.3 0.2 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GDI PF00996.13 gi|330834541|ref|YP_004409269.1| - 0.1 10.8 0.3 0.19 10.0 0.2 1.4 1 0 0 1 1 1 0 GDP dissociation inhibitor DrsE PF02635.10 gi|330834542|ref|YP_004409270.1| - 5.9e-17 61.8 0.0 6.8e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|330834542|ref|YP_004409270.1| - 2.7e-13 49.9 0.5 5.5e-06 26.2 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE_2 PF13686.1 gi|330834543|ref|YP_004409271.1| - 1.9e-29 102.3 2.7 4.7e-29 101.0 1.9 1.5 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|330834543|ref|YP_004409271.1| - 6.9e-08 32.5 0.1 2.5e-07 30.7 0.0 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.5 gi|330834543|ref|YP_004409271.1| - 0.04 13.3 0.3 0.091 12.2 0.0 1.6 2 0 0 2 2 2 0 Anti-repressor SinI TusA PF01206.12 gi|330834544|ref|YP_004409272.1| - 2.3e-24 84.7 0.0 2.6e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA SH3_3 PF08239.6 gi|330834544|ref|YP_004409272.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain Fer4_8 PF13183.1 gi|330834545|ref|YP_004409273.1| - 6.1e-10 38.9 6.8 1.1e-09 38.1 4.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330834545|ref|YP_004409273.1| - 8.9e-09 35.5 7.1 8.9e-09 35.5 4.9 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330834545|ref|YP_004409273.1| - 3.6e-06 27.2 2.4 0.072 13.5 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330834545|ref|YP_004409273.1| - 5.4e-06 26.5 8.8 1.2e-05 25.5 6.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834545|ref|YP_004409273.1| - 2e-05 24.2 8.2 0.0061 16.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834545|ref|YP_004409273.1| - 0.0001 22.0 10.2 0.00029 20.5 7.1 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834545|ref|YP_004409273.1| - 0.00087 19.6 10.5 0.011 16.0 8.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330834545|ref|YP_004409273.1| - 0.0013 18.9 11.0 0.0022 18.1 0.8 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330834545|ref|YP_004409273.1| - 0.0092 15.8 8.1 0.096 12.5 6.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|330834545|ref|YP_004409273.1| - 0.0092 15.5 5.3 0.028 14.0 0.2 2.2 1 1 1 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.1 gi|330834545|ref|YP_004409273.1| - 0.02 15.6 10.8 0.1 13.3 7.6 2.1 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|330834545|ref|YP_004409273.1| - 0.28 10.8 16.9 0.12 11.9 1.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330834545|ref|YP_004409273.1| - 0.55 10.2 13.0 2.6 8.0 1.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330834545|ref|YP_004409273.1| - 1.2 9.5 7.1 2.4 8.6 0.1 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain CCG PF02754.11 gi|330834546|ref|YP_004409274.1| - 4.4e-08 33.0 0.0 1.5e-06 28.1 0.0 3.0 2 1 0 2 2 2 1 Cysteine-rich domain HNH PF01844.18 gi|330834546|ref|YP_004409274.1| - 0.029 14.2 0.1 1.1 9.1 0.0 2.8 2 0 0 2 2 2 0 HNH endonuclease GerPC PF10737.4 gi|330834546|ref|YP_004409274.1| - 0.064 13.0 0.2 4 7.1 0.0 2.4 2 0 0 2 2 2 0 Spore germination protein GerPC Pyr_redox_2 PF07992.9 gi|330834547|ref|YP_004409275.1| - 3.2e-15 56.5 0.0 5.1e-15 55.9 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330834547|ref|YP_004409275.1| - 6.5e-10 38.5 0.1 2.3e-07 30.2 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|330834547|ref|YP_004409275.1| - 7.3e-09 34.5 0.0 0.0021 16.6 0.0 2.2 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|330834547|ref|YP_004409275.1| - 1.7e-08 33.7 0.1 3.5e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|330834547|ref|YP_004409275.1| - 5e-07 29.9 0.0 0.0017 18.4 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330834547|ref|YP_004409275.1| - 1.4e-06 28.2 0.0 3e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|330834547|ref|YP_004409275.1| - 1.7e-06 28.3 0.2 0.00065 20.0 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834547|ref|YP_004409275.1| - 1.5e-05 24.0 0.2 0.001 18.0 0.0 2.6 3 0 0 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|330834547|ref|YP_004409275.1| - 1.7e-05 24.1 0.0 0.00011 21.4 0.0 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|330834547|ref|YP_004409275.1| - 0.0002 20.3 0.0 0.025 13.4 0.0 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|330834547|ref|YP_004409275.1| - 0.00074 18.6 0.0 0.13 11.2 0.0 2.2 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase CPSase_L_chain PF00289.17 gi|330834547|ref|YP_004409275.1| - 0.00085 19.4 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Thi4 PF01946.12 gi|330834547|ref|YP_004409275.1| - 0.0018 17.4 0.0 0.0028 16.7 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|330834547|ref|YP_004409275.1| - 0.015 14.1 0.0 0.042 12.7 0.0 1.7 1 1 1 2 2 2 0 Lycopene cyclase protein AlaDh_PNT_C PF01262.16 gi|330834547|ref|YP_004409275.1| - 0.019 14.5 0.0 0.078 12.5 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|330834547|ref|YP_004409275.1| - 0.064 12.6 0.1 0.22 10.8 0.0 2.1 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_9 PF13454.1 gi|330834547|ref|YP_004409275.1| - 0.073 12.8 0.0 1.5 8.6 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|330834547|ref|YP_004409275.1| - 0.11 12.7 0.0 0.25 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Bacillus_HBL PF05791.6 gi|330834548|ref|YP_004409276.1| - 0.35 10.2 3.1 0.21 10.9 0.7 1.6 2 0 0 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Fer4_8 PF13183.1 gi|330834549|ref|YP_004409277.1| - 5.7e-10 39.0 7.1 8.9e-10 38.4 4.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330834549|ref|YP_004409277.1| - 6.6e-10 39.2 4.3 1.1e-09 38.5 3.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330834549|ref|YP_004409277.1| - 2.8e-07 30.7 7.1 6.1e-07 29.6 5.0 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330834549|ref|YP_004409277.1| - 1.8e-05 25.0 2.9 0.0069 16.7 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834549|ref|YP_004409277.1| - 2.2e-05 24.7 6.0 4.1e-05 23.8 4.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330834549|ref|YP_004409277.1| - 0.00019 22.0 3.0 0.014 16.1 0.3 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|330834549|ref|YP_004409277.1| - 0.00075 19.2 11.4 0.012 15.3 8.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834549|ref|YP_004409277.1| - 0.0051 16.6 9.5 0.28 11.1 1.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330834549|ref|YP_004409277.1| - 0.014 15.6 12.0 0.64 10.5 1.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330834549|ref|YP_004409277.1| - 0.02 14.7 8.9 0.069 13.0 6.2 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330834549|ref|YP_004409277.1| - 0.066 12.8 12.7 0.16 11.6 1.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1062 PF06353.7 gi|330834549|ref|YP_004409277.1| - 0.1 12.7 0.0 0.89 9.7 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1062) IZUMO PF15005.1 gi|330834549|ref|YP_004409277.1| - 0.17 11.9 3.9 0.7 9.9 0.5 2.3 2 0 0 2 2 2 0 Izumo sperm-egg fusion Fer4_20 PF14691.1 gi|330834549|ref|YP_004409277.1| - 0.23 11.0 6.2 0.11 12.1 0.3 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CCG PF02754.11 gi|330834550|ref|YP_004409278.1| - 2.9e-27 94.5 0.4 2.2e-14 53.2 0.1 2.6 3 0 0 3 3 3 2 Cysteine-rich domain DUF202 PF02656.10 gi|330834551|ref|YP_004409279.1| - 2.1e-14 53.4 7.7 2.3e-13 50.1 5.3 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF202) Claudin_2 PF13903.1 gi|330834551|ref|YP_004409279.1| - 5.2e-05 23.0 6.1 7.9e-05 22.4 4.2 1.3 1 1 0 1 1 1 1 PMP-22/EMP/MP20/Claudin tight junction SdpI PF13630.1 gi|330834551|ref|YP_004409279.1| - 0.12 12.0 9.2 0.27 10.9 1.9 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family Na_Ca_ex PF01699.19 gi|330834552|ref|YP_004409280.1| - 2.4e-26 92.0 26.6 2.1e-13 50.0 7.1 2.4 2 1 0 2 2 2 2 Sodium/calcium exchanger protein Ammonium_transp PF00909.16 gi|330834553|ref|YP_004409281.1| - 1.6e-93 313.3 29.5 1.8e-93 313.1 20.4 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF3216 PF11505.3 gi|330834554|ref|YP_004409282.1| - 0.015 15.0 0.0 0.017 14.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) DDE_Tnp_1_6 PF13751.1 gi|330834560|ref|YP_004409288.1| - 0.0023 17.9 0.1 0.0028 17.6 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1 PF01609.16 gi|330834560|ref|YP_004409288.1| - 0.0046 16.5 0.5 0.0049 16.4 0.3 1.0 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|330834560|ref|YP_004409288.1| - 0.059 12.9 0.4 0.06 12.9 0.3 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease MFS_1 PF07690.11 gi|330834561|ref|YP_004409289.1| - 1e-19 70.5 62.5 1.2e-19 70.3 34.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily BatA PF07584.6 gi|330834561|ref|YP_004409289.1| - 0.086 13.0 0.1 0.086 13.0 0.1 2.8 3 0 0 3 3 3 0 Aerotolerance regulator N-terminal Crp PF00325.15 gi|330834565|ref|YP_004409293.1| - 0.092 12.2 0.1 0.17 11.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family RTP PF02334.11 gi|330834565|ref|YP_004409293.1| - 0.1 12.5 0.1 0.1 12.5 0.1 1.0 1 0 0 1 1 1 0 Replication terminator protein Sulfolobus_pRN PF05584.6 gi|330834565|ref|YP_004409293.1| - 0.13 12.2 0.4 0.15 12.0 0.3 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein TPR_11 PF13414.1 gi|330834567|ref|YP_004409295.1| - 1.4e-27 95.0 7.8 6.3e-12 44.9 0.5 4.2 4 0 0 4 4 4 3 TPR repeat TPR_2 PF07719.12 gi|330834567|ref|YP_004409295.1| - 3.3e-22 76.5 8.5 0.0077 16.0 0.1 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330834567|ref|YP_004409295.1| - 1.3e-16 60.7 3.3 0.00045 20.8 0.2 4.3 3 1 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330834567|ref|YP_004409295.1| - 9.2e-15 53.5 7.4 0.0079 16.3 0.1 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330834567|ref|YP_004409295.1| - 1.4e-14 52.9 10.6 4.6e-05 22.8 0.1 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330834567|ref|YP_004409295.1| - 2.2e-10 40.6 6.8 0.0047 17.2 0.0 4.5 4 1 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330834567|ref|YP_004409295.1| - 5.4e-09 35.8 6.2 0.082 13.5 0.0 5.8 2 2 4 6 6 6 2 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330834567|ref|YP_004409295.1| - 1.1e-08 34.7 1.1 0.34 10.7 0.0 4.5 2 1 1 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330834567|ref|YP_004409295.1| - 1.5e-08 34.4 10.6 0.00041 20.2 0.1 4.3 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330834567|ref|YP_004409295.1| - 3.7e-08 32.5 18.8 0.012 15.3 0.2 5.9 6 0 0 6 6 6 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330834567|ref|YP_004409295.1| - 1.9e-06 27.9 2.8 0.16 12.1 0.1 3.9 2 1 3 5 5 5 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_6 PF13174.1 gi|330834567|ref|YP_004409295.1| - 3.1e-05 24.1 5.9 12 6.6 0.0 5.9 7 0 0 7 7 7 0 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330834567|ref|YP_004409295.1| - 0.00044 19.8 3.6 0.27 11.1 0.1 3.7 4 0 0 4 4 4 2 Tetratricopeptide repeat DUF3366 PF11846.3 gi|330834567|ref|YP_004409295.1| - 0.0007 19.5 0.0 0.0093 15.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3366) NARP1 PF12569.3 gi|330834567|ref|YP_004409295.1| - 0.0013 17.5 0.7 0.021 13.5 0.0 2.7 1 1 0 2 2 2 1 NMDA receptor-regulated protein 1 P16-Arc PF04699.9 gi|330834567|ref|YP_004409295.1| - 0.062 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 ARP2/3 complex 16 kDa subunit (p16-Arc) MIT PF04212.13 gi|330834567|ref|YP_004409295.1| - 0.086 12.7 0.1 0.086 12.7 0.1 3.2 4 0 0 4 4 4 0 MIT (microtubule interacting and transport) domain EamA PF00892.15 gi|330834568|ref|YP_004409296.1| - 3.3e-18 65.9 28.3 6.4e-12 45.6 7.0 2.8 2 2 1 3 3 3 2 EamA-like transporter family ABC_tran PF00005.22 gi|330834569|ref|YP_004409297.1| - 8.8e-34 116.7 0.0 1.2e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834569|ref|YP_004409297.1| - 3.4e-14 53.4 0.0 3.1e-07 30.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330834569|ref|YP_004409297.1| - 1.5e-06 27.6 0.2 0.026 13.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|330834569|ref|YP_004409297.1| - 4.4e-05 23.0 0.1 0.16 11.3 0.1 2.2 2 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|330834569|ref|YP_004409297.1| - 5e-05 23.3 0.2 0.00022 21.2 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|330834569|ref|YP_004409297.1| - 8.9e-05 21.6 0.1 0.053 12.5 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|330834569|ref|YP_004409297.1| - 0.00013 21.4 0.2 0.00022 20.6 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|330834569|ref|YP_004409297.1| - 0.00032 20.8 0.6 0.0036 17.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330834569|ref|YP_004409297.1| - 0.0005 20.4 1.1 0.0016 18.7 0.8 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|330834569|ref|YP_004409297.1| - 0.0022 17.4 0.7 0.0056 16.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330834569|ref|YP_004409297.1| - 0.0042 16.2 0.1 0.0058 15.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|330834569|ref|YP_004409297.1| - 0.014 15.1 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_33 PF13671.1 gi|330834569|ref|YP_004409297.1| - 0.017 14.9 0.1 0.034 14.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|330834569|ref|YP_004409297.1| - 0.025 15.3 1.5 0.041 14.6 1.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|330834569|ref|YP_004409297.1| - 0.028 14.7 0.0 0.28 11.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|330834569|ref|YP_004409297.1| - 0.038 13.6 0.0 0.079 12.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain cobW PF02492.14 gi|330834569|ref|YP_004409297.1| - 0.064 12.6 0.1 0.098 12.0 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.7 gi|330834569|ref|YP_004409297.1| - 0.07 12.4 0.0 0.095 11.9 0.0 1.2 1 0 0 1 1 1 0 Poxvirus A32 protein ATP-synt_ab PF00006.20 gi|330834569|ref|YP_004409297.1| - 0.091 12.2 0.0 0.092 12.2 0.0 1.2 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|330834569|ref|YP_004409297.1| - 0.092 11.9 0.0 0.18 10.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein MobB PF03205.9 gi|330834569|ref|YP_004409297.1| - 0.094 12.4 0.2 0.19 11.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|330834569|ref|YP_004409297.1| - 0.1 12.5 0.1 0.65 9.9 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|330834569|ref|YP_004409297.1| - 0.11 11.1 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit IstB_IS21 PF01695.12 gi|330834569|ref|YP_004409297.1| - 0.13 11.6 0.1 0.31 10.4 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein NPCBM_assoc PF10633.4 gi|330834570|ref|YP_004409298.1| - 2.4e-10 40.3 14.0 0.014 15.4 0.1 6.9 6 1 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|330834570|ref|YP_004409298.1| - 2.5e-06 27.4 32.3 0.001 19.1 0.1 6.5 7 1 0 7 7 7 3 CARDB Transglut_C PF00927.17 gi|330834570|ref|YP_004409298.1| - 5.1e-06 26.4 15.6 0.00039 20.4 0.2 5.1 6 1 0 6 6 6 2 Transglutaminase family, C-terminal ig like domain Rifin_STEVOR PF02009.11 gi|330834570|ref|YP_004409298.1| - 0.00086 19.0 0.8 0.0012 18.5 0.5 1.2 1 0 0 1 1 1 1 Rifin/stevor family DUF11 PF01345.13 gi|330834570|ref|YP_004409298.1| - 0.013 15.5 34.2 0.13 12.3 0.1 6.3 5 0 0 5 5 5 0 Domain of unknown function DUF11 Alpha_adaptinC2 PF02883.15 gi|330834570|ref|YP_004409298.1| - 0.08 13.2 0.1 0.08 13.2 0.1 5.6 6 0 0 6 6 6 0 Adaptin C-terminal domain TMEM154 PF15102.1 gi|330834570|ref|YP_004409298.1| - 0.64 9.7 6.6 0.13 12.0 1.6 2.1 2 0 0 2 2 2 0 TMEM154 protein family FtsX PF02687.16 gi|330834571|ref|YP_004409299.1| - 5.3e-24 84.3 14.9 9.9e-24 83.4 5.7 2.2 2 0 0 2 2 2 2 FtsX-like permease family MacB_PCD PF12704.2 gi|330834571|ref|YP_004409299.1| - 1.3e-19 70.7 0.8 1.3e-19 70.7 0.6 2.1 2 0 0 2 2 2 1 MacB-like periplasmic core domain Reeler PF02014.11 gi|330834571|ref|YP_004409299.1| - 0.15 12.3 0.0 2.6 8.3 0.0 2.3 1 1 1 2 2 2 0 Reeler domain Isochorismatase PF00857.15 gi|330834572|ref|YP_004409300.1| - 3.5e-40 137.7 0.0 4.1e-40 137.5 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DHH PF01368.15 gi|330834573|ref|YP_004409301.1| - 3.3e-06 26.8 0.0 5.8e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|330834573|ref|YP_004409301.1| - 4e-05 23.2 0.0 0.0001 21.9 0.0 1.6 1 0 0 1 1 1 1 DHHA1 domain DUF2833 PF11090.3 gi|330834573|ref|YP_004409301.1| - 0.068 13.3 0.1 1 9.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2833) AhpC-TSA PF00578.16 gi|330834574|ref|YP_004409302.1| - 1.4e-33 115.2 0.0 1.8e-33 114.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330834574|ref|YP_004409302.1| - 2.5e-12 46.5 0.0 3.5e-12 46.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|330834574|ref|YP_004409302.1| - 8.1e-08 31.7 0.0 1.7e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.1 gi|330834574|ref|YP_004409302.1| - 0.0019 18.1 0.0 0.019 14.9 0.0 2.0 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Metallophos_2 PF12850.2 gi|330834575|ref|YP_004409303.1| - 2.6e-10 40.3 0.0 3.6e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330834575|ref|YP_004409303.1| - 1.6e-05 24.4 0.1 2.5e-05 23.7 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HrpB_C PF08482.5 gi|330834575|ref|YP_004409303.1| - 0.019 15.0 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 ATP-dependent helicase C-terminal DUF763 PF05559.6 gi|330834576|ref|YP_004409304.1| - 6e-123 409.8 0.0 7.1e-123 409.6 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) DUF1441 PF07278.6 gi|330834576|ref|YP_004409304.1| - 0.05 13.2 0.1 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1441) Citrate_synt PF00285.16 gi|330834577|ref|YP_004409305.1| - 2.6e-131 437.5 0.0 2.9e-131 437.4 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase PhoU_div PF01865.11 gi|330834578|ref|YP_004409306.1| - 3.7e-14 52.4 12.1 4.4e-14 52.1 8.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 DUF769 PF05590.6 gi|330834578|ref|YP_004409306.1| - 0.014 14.6 0.2 0.021 14.0 0.1 1.3 1 0 0 1 1 1 0 Xylella fastidiosa protein of unknown function (DUF769) CHDCT2 PF08074.6 gi|330834578|ref|YP_004409306.1| - 0.18 11.5 0.7 1.5 8.4 0.0 2.2 2 0 0 2 2 2 0 CHDCT2 (NUC038) domain RHH_1 PF01402.16 gi|330834579|ref|YP_004409307.1| - 0.0024 17.7 0.0 0.0057 16.4 0.0 1.7 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Hom_end PF05204.9 gi|330834579|ref|YP_004409307.1| - 0.051 13.5 0.1 0.099 12.6 0.1 1.4 1 0 0 1 1 1 0 Homing endonuclease CheC PF04509.7 gi|330834579|ref|YP_004409307.1| - 0.1 12.3 0.3 0.27 11.0 0.1 1.7 2 0 0 2 2 2 0 CheC-like family ROF PF07073.7 gi|330834579|ref|YP_004409307.1| - 0.12 12.3 0.1 0.36 10.8 0.0 1.8 2 0 0 2 2 2 0 Modulator of Rho-dependent transcription termination (ROF) DUF3631 PF12307.3 gi|330834579|ref|YP_004409307.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3631) RHH_1 PF01402.16 gi|330834581|ref|YP_004409309.1| - 1.5e-05 24.6 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF2479 PF10651.4 gi|330834581|ref|YP_004409309.1| - 0.041 13.3 0.2 0.044 13.3 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2479) Fn3-like PF14310.1 gi|330834581|ref|YP_004409309.1| - 0.11 12.4 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Fibronectin type III-like domain PHO4 PF01384.15 gi|330834582|ref|YP_004409310.1| - 2.4e-37 128.3 38.0 2.4e-36 125.0 20.5 1.8 1 1 1 2 2 2 2 Phosphate transporter family EamA PF00892.15 gi|330834584|ref|YP_004409312.1| - 3.5e-26 91.7 43.6 2.6e-15 56.5 12.0 2.4 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|330834584|ref|YP_004409312.1| - 0.0018 18.4 31.5 0.038 14.1 7.4 3.1 1 1 2 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|330834584|ref|YP_004409312.1| - 0.022 14.3 18.6 0.05 13.2 2.9 3.1 3 1 0 3 3 3 0 Triose-phosphate Transporter family UAA PF08449.6 gi|330834584|ref|YP_004409312.1| - 0.13 11.1 22.4 0.038 12.9 2.3 3.1 2 1 1 3 3 3 0 UAA transporter family DUF2530 PF10745.4 gi|330834585|ref|YP_004409313.1| - 0.027 14.4 0.7 0.027 14.4 0.5 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2530) DUF3185 PF11381.3 gi|330834585|ref|YP_004409313.1| - 0.065 12.9 1.2 0.19 11.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF4131 PF13567.1 gi|330834585|ref|YP_004409313.1| - 0.81 9.0 14.7 0.091 12.1 2.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Sugar_tr PF00083.19 gi|330834586|ref|YP_004409314.1| - 8e-50 169.7 19.7 9.4e-50 169.4 13.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330834586|ref|YP_004409314.1| - 4.5e-28 97.9 32.3 2.5e-27 95.5 20.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HAD_2 PF13419.1 gi|330834587|ref|YP_004409315.1| - 3.4e-14 53.4 0.0 4.2e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330834587|ref|YP_004409315.1| - 1.8e-07 30.7 0.0 4.3e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|330834587|ref|YP_004409315.1| - 1.3e-05 25.7 0.0 1.4e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|330834587|ref|YP_004409315.1| - 0.0027 17.5 0.0 0.006 16.4 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330834587|ref|YP_004409315.1| - 0.032 14.3 0.0 0.038 14.1 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TusA PF01206.12 gi|330834588|ref|YP_004409316.1| - 2.2e-08 33.6 0.1 2.3e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox PF00070.22 gi|330834589|ref|YP_004409317.1| - 6.2e-19 68.1 0.9 2.2e-16 60.0 0.1 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|330834589|ref|YP_004409317.1| - 2.7e-12 46.9 9.8 2.7e-09 37.1 6.8 4.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834589|ref|YP_004409317.1| - 5.2e-09 35.4 4.8 0.00062 18.7 0.0 4.0 3 1 1 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|330834589|ref|YP_004409317.1| - 0.00017 21.7 1.1 0.0022 18.1 0.0 2.8 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330834589|ref|YP_004409317.1| - 0.00062 19.7 0.0 0.4 10.7 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|330834589|ref|YP_004409317.1| - 0.0026 17.7 0.1 0.0093 15.9 0.0 2.0 2 0 0 2 2 2 1 TrkA-N domain GIDA PF01134.17 gi|330834589|ref|YP_004409317.1| - 0.0033 16.3 0.2 0.53 9.0 0.0 3.1 2 1 2 4 4 4 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|330834589|ref|YP_004409317.1| - 0.0037 15.7 3.1 0.36 9.2 0.0 3.4 3 1 1 4 4 4 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|330834589|ref|YP_004409317.1| - 0.0041 16.2 0.1 0.05 12.6 0.0 2.2 2 0 0 2 2 2 1 FAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|330834589|ref|YP_004409317.1| - 0.0042 16.8 0.1 0.026 14.2 0.0 2.2 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Big_3_3 PF13750.1 gi|330834589|ref|YP_004409317.1| - 0.005 16.2 0.1 0.012 15.0 0.0 1.6 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 3) AlaDh_PNT_C PF01262.16 gi|330834589|ref|YP_004409317.1| - 0.0072 15.9 0.2 1.3 8.5 0.1 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|330834589|ref|YP_004409317.1| - 0.033 13.8 0.2 0.095 12.3 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.19 gi|330834589|ref|YP_004409317.1| - 0.038 12.8 0.1 4.5 6.0 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain IlvN PF07991.7 gi|330834589|ref|YP_004409317.1| - 0.056 12.8 0.0 0.15 11.4 0.0 1.8 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|330834589|ref|YP_004409317.1| - 0.073 13.3 0.1 1.4 9.2 0.0 2.3 2 0 0 2 2 2 0 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|330834589|ref|YP_004409317.1| - 0.11 11.4 0.0 0.58 9.0 0.0 2.0 1 1 1 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 2-Hacid_dh_C PF02826.14 gi|330834589|ref|YP_004409317.1| - 0.12 11.5 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|330834589|ref|YP_004409317.1| - 0.18 10.3 1.0 9.7 4.6 0.0 2.8 2 1 1 3 3 3 0 Tryptophan halogenase Radical_SAM PF04055.16 gi|330834590|ref|YP_004409318.1| - 6.9e-11 42.5 0.6 1.5e-10 41.4 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily zf-C2HC5 PF06221.8 gi|330834590|ref|YP_004409318.1| - 0.063 13.0 0.7 4.6 7.0 0.2 2.4 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type Radical_SAM PF04055.16 gi|330834591|ref|YP_004409319.1| - 2.8e-11 43.8 0.0 4.2e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330834591|ref|YP_004409319.1| - 0.095 12.8 0.4 0.18 11.9 0.3 1.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF2972 PF11186.3 gi|330834591|ref|YP_004409319.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2972) BPL_LplA_LipB PF03099.14 gi|330834592|ref|YP_004409320.1| - 3.2e-14 53.0 0.0 4.9e-14 52.4 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.4 gi|330834593|ref|YP_004409321.1| - 0.13 11.9 0.1 0.19 11.4 0.0 1.3 1 1 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus EVE PF01878.13 gi|330834594|ref|YP_004409322.1| - 3.5e-15 56.2 0.1 3.7e-15 56.2 0.1 1.1 1 0 0 1 1 1 1 EVE domain DUF1286 PF06939.6 gi|330834595|ref|YP_004409323.1| - 5e-32 110.4 4.6 1.1e-31 109.3 3.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1286) DUF457 PF04307.9 gi|330834595|ref|YP_004409323.1| - 0.00022 20.6 4.6 0.00039 19.7 3.2 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) AA_permease_2 PF13520.1 gi|330834596|ref|YP_004409324.1| - 2.6e-35 121.7 62.0 3.3e-35 121.4 43.0 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330834596|ref|YP_004409324.1| - 8.2e-11 40.8 56.8 1.8e-10 39.7 39.4 1.5 1 1 0 1 1 1 1 Amino acid permease DUF1404 PF07185.6 gi|330834597|ref|YP_004409325.1| - 3.6e-44 150.3 15.3 4.1e-44 150.1 10.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.5 gi|330834597|ref|YP_004409325.1| - 0.00015 20.7 11.6 0.00024 20.1 8.1 1.3 1 1 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Na_H_Exchanger PF00999.16 gi|330834598|ref|YP_004409326.1| - 4.3e-52 176.9 54.0 5.2e-52 176.6 37.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF929 PF06053.6 gi|330834600|ref|YP_004409328.1| - 1e-80 270.4 8.7 1.2e-80 270.2 6.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Yip1 PF04893.12 gi|330834600|ref|YP_004409328.1| - 0.0028 17.1 0.4 0.005 16.3 0.3 1.5 1 0 0 1 1 1 1 Yip1 domain PsbT PF01405.12 gi|330834600|ref|YP_004409328.1| - 0.23 11.0 3.4 0.48 10.0 2.3 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre T protein PEPCK PF00821.13 gi|330834602|ref|YP_004409330.1| - 1.5e-183 611.2 0.0 1.7e-183 611.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase MORN PF02493.15 gi|330834602|ref|YP_004409330.1| - 0.16 11.7 1.5 0.49 10.2 1.1 1.9 1 0 0 1 1 1 0 MORN repeat Lactamase_B PF00753.22 gi|330834603|ref|YP_004409331.1| - 2.1e-20 73.1 0.6 2.8e-20 72.8 0.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330834603|ref|YP_004409331.1| - 4.2e-06 26.4 0.0 5.8e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain AA_permease_2 PF13520.1 gi|330834604|ref|YP_004409332.1| - 1.1e-35 123.0 80.8 3.1e-34 118.2 51.0 2.4 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|330834604|ref|YP_004409332.1| - 1e-30 106.5 48.2 1e-30 106.5 33.4 2.5 1 1 0 2 2 2 1 Amino acid permease HTH_17 PF12728.2 gi|330834604|ref|YP_004409332.1| - 0.035 14.3 0.0 0.069 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AMP-binding PF00501.23 gi|330834605|ref|YP_004409333.1| - 2.1e-81 273.4 0.0 2.8e-81 273.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330834605|ref|YP_004409333.1| - 9.9e-23 80.8 0.7 2.5e-22 79.6 0.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Molybdopterin PF00384.17 gi|330834606|ref|YP_004409334.1| - 5.3e-67 226.4 0.0 6.9e-67 226.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330834606|ref|YP_004409334.1| - 7.3e-25 86.9 0.0 1.6e-24 85.8 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|330834606|ref|YP_004409334.1| - 0.001 18.8 0.0 0.002 17.9 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Aldose_epim PF01263.15 gi|330834607|ref|YP_004409335.1| - 2.2e-31 109.1 0.0 3.3e-31 108.5 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Cm_res_leader PF08077.6 gi|330834607|ref|YP_004409335.1| - 0.063 13.0 0.7 0.48 10.2 0.1 2.3 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide HTH_24 PF13412.1 gi|330834608|ref|YP_004409336.1| - 9.8e-06 24.8 0.6 9.8e-06 24.8 0.4 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|330834608|ref|YP_004409336.1| - 9.3e-05 21.6 0.1 0.00017 20.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|330834608|ref|YP_004409336.1| - 0.00014 21.4 0.0 0.00022 20.8 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|330834608|ref|YP_004409336.1| - 0.00037 20.1 0.1 0.00049 19.7 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|330834608|ref|YP_004409336.1| - 0.00064 19.3 0.5 0.00098 18.7 0.3 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|330834608|ref|YP_004409336.1| - 0.00064 19.1 0.1 0.00099 18.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|330834608|ref|YP_004409336.1| - 0.0024 17.5 0.1 0.0045 16.6 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_17 PF12728.2 gi|330834608|ref|YP_004409336.1| - 0.0074 16.5 0.1 0.015 15.5 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330834608|ref|YP_004409336.1| - 0.01 15.6 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|330834608|ref|YP_004409336.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330834608|ref|YP_004409336.1| - 0.013 15.1 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|330834608|ref|YP_004409336.1| - 0.025 14.8 0.1 0.041 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Crp PF00325.15 gi|330834608|ref|YP_004409336.1| - 0.028 13.8 0.0 0.051 13.0 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_AsnC-type PF13404.1 gi|330834608|ref|YP_004409336.1| - 0.034 13.6 0.0 0.054 13.0 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Mga PF08280.6 gi|330834608|ref|YP_004409336.1| - 0.049 13.3 1.6 0.13 12.0 0.1 2.4 2 1 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.7 gi|330834608|ref|YP_004409336.1| - 0.091 12.4 0.2 0.15 11.7 0.1 1.6 1 1 0 1 1 1 0 HTH domain Sigma70_r3 PF04539.11 gi|330834608|ref|YP_004409336.1| - 0.1 12.5 0.2 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 DUF1894 PF08979.6 gi|330834608|ref|YP_004409336.1| - 0.1 12.6 0.2 0.13 12.3 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF1894) HTH_20 PF12840.2 gi|330834608|ref|YP_004409336.1| - 0.12 12.2 0.3 0.15 11.8 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Lyase_1 PF00206.15 gi|330834610|ref|YP_004409338.1| - 2.6e-85 286.3 0.0 3.1e-85 286.0 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|330834610|ref|YP_004409338.1| - 4.5e-12 45.8 0.0 9.4e-12 44.8 0.0 1.6 1 0 0 1 1 1 1 Fumarase C C-terminus HTH_23 PF13384.1 gi|330834610|ref|YP_004409338.1| - 0.018 14.6 0.0 0.056 13.1 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain FAD_binding_4 PF01565.18 gi|330834611|ref|YP_004409339.1| - 7.9e-11 41.5 0.0 1.5e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Antitoxin-MazE PF04014.13 gi|330834612|ref|YP_004409340.1| - 6.6e-10 38.5 0.1 7.3e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|330834612|ref|YP_004409340.1| - 0.00027 20.2 0.5 0.00064 19.0 0.1 1.7 1 1 1 2 2 2 1 Translation initiation factor 1A / IF-1 UPF0270 PF06794.7 gi|330834612|ref|YP_004409340.1| - 0.01 15.5 0.0 0.011 15.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0270) DUF1905 PF08922.6 gi|330834612|ref|YP_004409340.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) DUF2258 PF10015.4 gi|330834612|ref|YP_004409340.1| - 0.28 11.0 1.7 0.91 9.3 1.2 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2258) Aconitase PF00330.15 gi|330834613|ref|YP_004409341.1| - 3e-130 434.8 0.0 6.2e-130 433.7 0.0 1.5 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|330834613|ref|YP_004409341.1| - 5.5e-33 113.8 0.0 1.4e-32 112.5 0.0 1.7 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF162 PF02589.10 gi|330834614|ref|YP_004409342.1| - 1.2e-45 155.3 0.2 1.6e-45 154.9 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|330834614|ref|YP_004409342.1| - 2.7e-10 40.1 2.0 4.7e-10 39.3 1.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330834614|ref|YP_004409342.1| - 1e-06 29.0 1.6 0.036 14.4 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330834614|ref|YP_004409342.1| - 3.2e-06 27.3 2.9 1e-05 25.7 2.2 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330834614|ref|YP_004409342.1| - 1.3e-05 24.8 4.0 0.00021 20.9 3.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|330834614|ref|YP_004409342.1| - 5e-05 22.8 1.0 0.0085 15.7 0.0 2.7 2 0 0 2 2 2 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_9 PF13187.1 gi|330834614|ref|YP_004409342.1| - 7.5e-05 22.9 5.2 0.011 15.9 5.3 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834614|ref|YP_004409342.1| - 0.00022 21.5 3.5 0.00051 20.3 2.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834614|ref|YP_004409342.1| - 0.0032 17.2 9.1 0.028 14.2 1.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330834614|ref|YP_004409342.1| - 0.0046 16.5 8.4 0.0069 15.9 1.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330834614|ref|YP_004409342.1| - 0.0077 16.0 3.1 0.063 13.1 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330834614|ref|YP_004409342.1| - 0.014 15.9 11.6 0.74 10.5 0.4 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330834614|ref|YP_004409342.1| - 0.036 14.3 6.8 0.14 12.5 0.8 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330834614|ref|YP_004409342.1| - 0.06 13.3 5.7 0.14 12.1 0.6 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330834614|ref|YP_004409342.1| - 0.47 11.2 6.1 4.1 8.2 4.3 2.2 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain CCG PF02754.11 gi|330834615|ref|YP_004409343.1| - 4e-08 33.1 0.0 2.1e-06 27.6 0.0 2.5 2 0 0 2 2 2 1 Cysteine-rich domain Epimerase_2 PF02350.14 gi|330834615|ref|YP_004409343.1| - 0.066 11.9 0.0 0.096 11.4 0.0 1.2 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase NicO PF03824.11 gi|330834616|ref|YP_004409344.1| - 0.00023 20.6 0.4 0.00023 20.6 0.3 2.7 2 1 1 3 3 3 1 High-affinity nickel-transport protein COX1 PF00115.15 gi|330834616|ref|YP_004409344.1| - 3.8 6.0 16.0 0.031 12.8 0.6 2.5 3 0 0 3 3 3 0 Cytochrome C and Quinol oxidase polypeptide I tRNA_m1G_MT PF01746.16 gi|330834617|ref|YP_004409345.1| - 1.4e-14 54.1 0.1 2.2e-13 50.2 0.1 2.0 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|330834617|ref|YP_004409345.1| - 9e-06 25.2 0.0 1.6e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase CoA_trans PF01144.18 gi|330834619|ref|YP_004409347.1| - 8.4e-29 100.3 0.0 9.7e-29 100.0 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.18 gi|330834620|ref|YP_004409348.1| - 3.6e-22 78.6 0.1 4.4e-22 78.3 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Methyltransf_11 PF08241.7 gi|330834621|ref|YP_004409349.1| - 5.8e-05 23.5 0.0 0.00013 22.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain CBS PF00571.23 gi|330834622|ref|YP_004409350.1| - 2.7e-26 91.0 2.2 1.6e-12 46.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain Cache_3 PF14827.1 gi|330834622|ref|YP_004409350.1| - 0.028 14.3 0.4 0.21 11.5 0.3 2.1 1 1 0 1 1 1 0 Sensory domain of two-component sensor kinase DSBA PF01323.15 gi|330834623|ref|YP_004409351.1| - 2.8e-25 89.0 0.9 2.2e-14 53.4 0.1 2.1 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|330834623|ref|YP_004409351.1| - 7.7e-21 74.4 0.0 1.7e-20 73.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.1 gi|330834623|ref|YP_004409351.1| - 2.2e-12 47.2 0.2 3.5e-08 33.6 0.0 2.1 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.1 gi|330834623|ref|YP_004409351.1| - 2e-07 30.7 0.4 1.7e-05 24.5 0.1 2.5 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.1 gi|330834623|ref|YP_004409351.1| - 6.6e-06 26.3 0.1 0.084 13.0 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin-like domain DUF1525 PF07511.6 gi|330834623|ref|YP_004409351.1| - 0.045 13.7 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Syntaxin PF00804.20 gi|330834624|ref|YP_004409352.1| - 0.0009 19.3 0.2 0.003 17.7 0.1 1.7 1 1 0 1 1 1 1 Syntaxin Vip3A_N PF12495.3 gi|330834624|ref|YP_004409352.1| - 0.0011 18.7 0.8 0.0017 18.0 0.5 1.4 1 1 0 1 1 1 1 Vegetative insecticide protein 3A N terminal YtzH PF14165.1 gi|330834624|ref|YP_004409352.1| - 0.039 14.1 1.0 0.05 13.8 0.3 1.6 2 0 0 2 2 2 0 YtzH-like protein Vps51 PF08700.6 gi|330834624|ref|YP_004409352.1| - 0.082 12.7 0.5 0.38 10.6 0.3 1.9 2 0 0 2 2 2 0 Vps51/Vps67 Latarcin PF10279.4 gi|330834624|ref|YP_004409352.1| - 0.096 12.8 0.0 0.24 11.5 0.0 1.7 1 1 0 1 1 1 0 Latarcin precursor Erp_C PF06780.6 gi|330834624|ref|YP_004409352.1| - 0.2 11.4 2.5 0.47 10.2 1.7 1.7 1 1 0 1 1 1 0 Erp protein C-terminus OsmC PF02566.14 gi|330834625|ref|YP_004409353.1| - 5.3e-16 58.6 0.0 7.4e-16 58.1 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein GnsAB PF08178.6 gi|330834626|ref|YP_004409354.1| - 0.0042 16.6 0.1 0.0093 15.6 0.0 1.5 1 0 0 1 1 1 1 GnsA/GnsB family CBS PF00571.23 gi|330834627|ref|YP_004409355.1| - 1.9e-43 145.9 18.8 2.6e-14 52.7 0.5 4.7 4 1 0 4 4 4 4 CBS domain BPL_LplA_LipB PF03099.14 gi|330834628|ref|YP_004409356.1| - 9e-10 38.6 0.1 2e-09 37.5 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family GCV_H PF01597.14 gi|330834629|ref|YP_004409357.1| - 3.9e-42 142.7 1.3 5e-42 142.4 0.9 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|330834629|ref|YP_004409357.1| - 2.6e-06 26.9 4.0 4.3e-06 26.2 2.8 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|330834629|ref|YP_004409357.1| - 5.4e-05 22.8 0.5 9.9e-05 22.0 0.3 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|330834629|ref|YP_004409357.1| - 0.022 14.4 0.2 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|330834629|ref|YP_004409357.1| - 0.087 12.8 1.7 1.7 8.7 0.2 2.2 1 1 1 2 2 2 0 Peptidase family M23 Biotin_lipoyl_2 PF13533.1 gi|330834629|ref|YP_004409357.1| - 0.12 12.1 1.6 2.6 7.7 0.1 2.3 2 0 0 2 2 2 0 Biotin-lipoyl like DUF123 PF01986.11 gi|330834630|ref|YP_004409358.1| - 3.4e-20 71.9 0.2 4.3e-20 71.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|330834630|ref|YP_004409358.1| - 0.017 15.4 0.1 0.023 15.0 0.0 1.4 1 0 0 1 1 1 0 GIY-YIG catalytic domain Peptidase_M20 PF01546.23 gi|330834631|ref|YP_004409359.1| - 8.5e-24 84.0 0.0 1.1e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|330834631|ref|YP_004409359.1| - 1.6e-19 69.7 0.0 2.6e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Cbl_N PF02262.11 gi|330834632|ref|YP_004409360.1| - 0.13 11.9 0.3 0.26 10.9 0.1 1.5 1 1 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 7TM_GPCR_Srw PF10324.4 gi|330834633|ref|YP_004409361.1| - 0.038 13.1 0.5 0.042 12.9 0.4 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srw Sugar_transport PF06800.7 gi|330834633|ref|YP_004409361.1| - 0.055 12.5 0.3 0.057 12.5 0.2 1.2 1 0 0 1 1 1 0 Sugar transport protein DUF1600 PF07667.6 gi|330834633|ref|YP_004409361.1| - 0.12 12.4 1.2 0.16 12.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1600) TrbC PF04956.8 gi|330834633|ref|YP_004409361.1| - 0.14 12.1 2.0 0.8 9.7 0.6 2.1 1 1 1 2 2 2 0 TrbC/VIRB2 family RseC_MucC PF04246.7 gi|330834633|ref|YP_004409361.1| - 0.2 11.2 1.1 0.22 11.0 0.7 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Nucleos_tra2_N PF01773.15 gi|330834633|ref|YP_004409361.1| - 0.32 11.3 4.9 0.5 10.7 2.4 1.9 1 1 1 2 2 2 0 Na+ dependent nucleoside transporter N-terminus DUF3098 PF11297.3 gi|330834633|ref|YP_004409361.1| - 0.34 10.6 2.2 0.51 10.1 1.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3098) ATPase_gene1 PF09527.5 gi|330834633|ref|YP_004409361.1| - 0.51 10.1 4.3 5.6 6.8 3.1 2.0 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) VMA21 PF09446.5 gi|330834633|ref|YP_004409361.1| - 4.7 7.1 7.1 15 5.6 4.9 1.8 1 1 0 1 1 1 0 VMA21-like domain ATP_bind_3 PF01171.15 gi|330834635|ref|YP_004409363.1| - 1.9e-14 53.5 0.0 5.9e-14 51.9 0.0 1.8 1 1 0 1 1 1 1 PP-loop family RecR PF02132.10 gi|330834635|ref|YP_004409363.1| - 0.031 13.6 0.8 0.031 13.6 0.5 3.0 3 0 0 3 3 3 0 RecR protein DZR PF12773.2 gi|330834635|ref|YP_004409363.1| - 0.056 13.2 8.5 0.51 10.2 0.4 3.2 3 0 0 3 3 3 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|330834635|ref|YP_004409363.1| - 0.1 12.2 8.5 1.6 8.5 0.0 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|330834635|ref|YP_004409363.1| - 0.67 9.2 8.6 6.1 6.1 1.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain MtaB PF12176.3 gi|330834636|ref|YP_004409364.1| - 0.051 12.0 0.0 0.06 11.7 0.0 1.1 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit FHA PF00498.21 gi|330834637|ref|YP_004409365.1| - 3.7e-15 55.7 0.0 8.1e-15 54.6 0.0 1.5 1 0 0 1 1 1 1 FHA domain zf-ribbon_3 PF13248.1 gi|330834637|ref|YP_004409365.1| - 2.5e-05 23.3 1.4 4.3e-05 22.5 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|330834637|ref|YP_004409365.1| - 0.00018 20.8 2.4 0.00035 19.9 1.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|330834637|ref|YP_004409365.1| - 0.00042 20.0 1.4 0.00071 19.3 1.0 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|330834637|ref|YP_004409365.1| - 0.055 12.5 1.1 0.094 11.8 0.8 1.4 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others PAT1 PF09770.4 gi|330834637|ref|YP_004409365.1| - 0.12 10.5 12.3 0.13 10.4 8.5 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 Shisa PF13908.1 gi|330834637|ref|YP_004409365.1| - 0.68 10.0 7.5 1 9.5 5.2 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator DUF3595 PF12166.3 gi|330834637|ref|YP_004409365.1| - 3.9 6.1 5.9 4.9 5.8 3.8 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3595) Suf PF05843.9 gi|330834637|ref|YP_004409365.1| - 9.2 5.8 9.1 12 5.5 6.3 1.1 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) Metallophos PF00149.23 gi|330834638|ref|YP_004409366.1| - 3.6e-28 98.3 0.4 5.7e-28 97.6 0.3 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|330834638|ref|YP_004409366.1| - 6.5e-08 32.5 0.0 8.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain VWA_2 PF13519.1 gi|330834639|ref|YP_004409367.1| - 7.5e-23 81.4 0.0 1.9e-22 80.1 0.0 1.7 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|330834639|ref|YP_004409367.1| - 1.8e-19 70.1 0.1 3.9e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|330834639|ref|YP_004409367.1| - 9.5e-14 51.3 0.0 3e-13 49.7 0.0 1.7 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|330834639|ref|YP_004409367.1| - 1.4e-08 34.1 0.0 3e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|330834639|ref|YP_004409367.1| - 3.9e-05 23.6 0.0 8.4e-05 22.5 0.0 1.6 1 0 0 1 1 1 1 VWA-like domain (DUF2201) vWA-TerF-like PF10138.4 gi|330834639|ref|YP_004409367.1| - 0.0013 18.6 0.2 0.0055 16.5 0.0 2.1 2 1 0 2 2 2 1 vWA found in TerF C terminus DEAD PF00270.24 gi|330834640|ref|YP_004409368.1| - 3.1e-42 143.9 0.0 4.4e-40 136.9 0.0 2.1 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330834640|ref|YP_004409368.1| - 1.8e-23 82.1 1.1 3.2e-23 81.3 0.2 1.9 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330834640|ref|YP_004409368.1| - 1.3e-05 25.0 0.0 0.00012 21.9 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.9 gi|330834640|ref|YP_004409368.1| - 2.9e-05 23.4 0.4 0.00017 20.9 0.3 1.9 1 1 0 1 1 1 1 SecA DEAD-like domain CMS1 PF14617.1 gi|330834640|ref|YP_004409368.1| - 0.0035 16.4 0.0 0.038 13.0 0.0 2.3 2 0 0 2 2 2 1 U3-containing 90S pre-ribosomal complex subunit AAA_22 PF13401.1 gi|330834640|ref|YP_004409368.1| - 0.0042 17.2 0.0 0.012 15.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330834640|ref|YP_004409368.1| - 0.036 13.8 0.0 0.1 12.3 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Flavi_DEAD PF07652.9 gi|330834640|ref|YP_004409368.1| - 0.073 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Flavivirus DEAD domain T4SS-DNA_transf PF02534.9 gi|330834640|ref|YP_004409368.1| - 0.076 11.5 0.0 0.12 10.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer DUF3311 PF11755.3 gi|330834641|ref|YP_004409369.1| - 1.4e-08 34.1 1.6 1.4e-08 34.1 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) YrhC PF14143.1 gi|330834641|ref|YP_004409369.1| - 0.0097 15.8 0.6 0.014 15.3 0.4 1.3 1 0 0 1 1 1 1 YrhC-like protein SSF PF00474.12 gi|330834642|ref|YP_004409370.1| - 3.2e-12 45.8 31.7 5.2e-12 45.1 22.0 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family YukC PF10140.4 gi|330834642|ref|YP_004409370.1| - 0.25 9.8 0.8 0.4 9.2 0.1 1.6 2 0 0 2 2 2 0 WXG100 protein secretion system (Wss), protein YukC TIM PF00121.13 gi|330834644|ref|YP_004409372.1| - 2.3e-27 95.6 0.2 1.8e-24 86.1 0.1 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|330834644|ref|YP_004409372.1| - 5.6e-06 25.6 0.3 1e-05 24.7 0.2 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.7 gi|330834644|ref|YP_004409372.1| - 0.00015 20.7 0.2 0.004 16.1 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Glu_synthase PF01645.12 gi|330834644|ref|YP_004409372.1| - 0.0025 16.7 0.1 0.0049 15.8 0.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|330834644|ref|YP_004409372.1| - 0.0029 16.5 0.3 0.005 15.7 0.2 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Trp_syntA PF00290.15 gi|330834644|ref|YP_004409372.1| - 0.0048 15.4 0.4 0.0048 15.4 0.3 2.0 3 0 0 3 3 3 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|330834644|ref|YP_004409372.1| - 0.012 14.9 0.9 0.029 13.6 0.7 1.6 1 0 0 1 1 1 0 PcrB family IGPS PF00218.16 gi|330834644|ref|YP_004409372.1| - 0.014 14.4 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase His_biosynth PF00977.16 gi|330834644|ref|YP_004409372.1| - 0.015 14.6 1.3 0.063 12.5 0.1 2.4 3 1 0 3 3 3 0 Histidine biosynthesis protein NMO PF03060.10 gi|330834644|ref|YP_004409372.1| - 0.021 13.9 0.2 0.037 13.1 0.2 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase HTH_1 PF00126.22 gi|330834645|ref|YP_004409373.1| - 0.00015 21.4 0.0 0.00038 20.1 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_28 PF13518.1 gi|330834645|ref|YP_004409373.1| - 0.0082 16.1 0.1 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain LZ_Tnp_IS481 PF13011.1 gi|330834645|ref|YP_004409373.1| - 0.027 14.7 0.1 0.089 13.1 0.0 1.7 1 1 1 2 2 2 0 leucine-zipper of insertion element IS481 ATP-grasp PF02222.17 gi|330834646|ref|YP_004409374.1| - 4.8e-42 143.2 0.0 8.7e-42 142.3 0.0 1.4 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330834646|ref|YP_004409374.1| - 3.9e-05 23.5 0.0 7.8e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330834646|ref|YP_004409374.1| - 0.088 11.5 0.0 1.8 7.1 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon AIRC PF00731.15 gi|330834647|ref|YP_004409375.1| - 1.3e-66 222.5 0.2 1.4e-66 222.3 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.6 gi|330834647|ref|YP_004409375.1| - 0.035 13.4 0.2 0.061 12.7 0.1 1.5 1 1 0 1 1 1 0 Propionate catabolism activator DUF2005 PF09407.5 gi|330834647|ref|YP_004409375.1| - 0.05 12.3 0.0 0.055 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2005) DUF1541 PF07563.6 gi|330834647|ref|YP_004409375.1| - 0.12 12.0 0.9 0.66 9.6 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1541) AA_permease_2 PF13520.1 gi|330834648|ref|YP_004409376.1| - 3e-08 32.6 53.6 3.6e-08 32.3 37.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330834648|ref|YP_004409376.1| - 4.6e-08 31.8 44.9 4.8e-07 28.4 31.1 2.2 1 1 0 1 1 1 1 Amino acid permease SKG6 PF08693.5 gi|330834648|ref|YP_004409376.1| - 0.059 12.6 2.9 0.22 10.8 1.5 2.4 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Esterase PF00756.15 gi|330834649|ref|YP_004409377.1| - 1.5e-12 47.4 0.0 2.6e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Abhydrolase_5 PF12695.2 gi|330834649|ref|YP_004409377.1| - 0.071 12.8 0.0 0.12 12.1 0.0 1.5 1 1 0 1 1 1 0 Alpha/beta hydrolase family DUF1286 PF06939.6 gi|330834650|ref|YP_004409378.1| - 0.12 12.5 0.1 0.12 12.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1286) DUF2073 PF09846.4 gi|330834652|ref|YP_004409380.1| - 0.073 12.7 0.0 0.091 12.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) DUF4215 PF13948.1 gi|330834652|ref|YP_004409380.1| - 0.37 11.0 2.5 9.8 6.4 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4215) Methyltransf_11 PF08241.7 gi|330834653|ref|YP_004409381.1| - 4e-16 59.2 0.0 5.1e-16 58.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330834653|ref|YP_004409381.1| - 8.1e-15 54.7 0.0 9.1e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330834653|ref|YP_004409381.1| - 1.1e-09 38.2 0.0 1.6e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330834653|ref|YP_004409381.1| - 4.5e-09 36.2 0.0 5.5e-09 35.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330834653|ref|YP_004409381.1| - 8.9e-09 34.9 0.0 1.2e-08 34.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|330834653|ref|YP_004409381.1| - 2.5e-08 34.2 0.0 3.4e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330834653|ref|YP_004409381.1| - 4.5e-08 33.6 0.0 5.9e-08 33.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330834653|ref|YP_004409381.1| - 9.5e-08 32.4 0.0 1.2e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330834653|ref|YP_004409381.1| - 3e-05 23.3 0.0 3.7e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.10 gi|330834653|ref|YP_004409381.1| - 5.8e-05 22.8 0.0 0.00016 21.3 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|330834653|ref|YP_004409381.1| - 0.00072 18.9 0.0 0.0009 18.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Ubie_methyltran PF01209.13 gi|330834653|ref|YP_004409381.1| - 0.00077 18.6 0.0 0.00099 18.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|330834653|ref|YP_004409381.1| - 0.0033 17.0 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|330834653|ref|YP_004409381.1| - 0.016 14.8 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_24 PF13578.1 gi|330834653|ref|YP_004409381.1| - 0.06 14.1 0.0 0.081 13.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DNA_pol_B PF00136.16 gi|330834655|ref|YP_004409383.1| - 1e-19 70.7 0.1 7.3e-14 51.4 0.0 3.3 2 1 1 3 3 3 2 DNA polymerase family B Exo_endo_phos PF03372.18 gi|330834656|ref|YP_004409384.1| - 1e-25 91.1 0.0 1.2e-25 90.8 0.0 1.0 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.1 gi|330834656|ref|YP_004409384.1| - 1.6e-13 50.2 0.0 2.7e-13 49.5 0.0 1.4 1 0 0 1 1 1 1 Endonuclease-reverse transcriptase Hemerythrin PF01814.18 gi|330834657|ref|YP_004409385.1| - 1.1e-07 32.0 1.4 1.4e-07 31.6 1.0 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Fer4 PF00037.22 gi|330834658|ref|YP_004409386.1| - 1.3e-13 49.8 15.6 1.4e-07 30.8 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330834658|ref|YP_004409386.1| - 4.1e-11 42.9 7.8 5.2e-11 42.6 5.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330834658|ref|YP_004409386.1| - 9.7e-10 38.1 19.4 3.8e-07 29.8 5.9 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834658|ref|YP_004409386.1| - 2e-09 36.9 16.0 4.1e-06 26.4 4.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330834658|ref|YP_004409386.1| - 7.5e-09 35.8 7.5 1.2e-08 35.1 5.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330834658|ref|YP_004409386.1| - 4.5e-08 32.8 6.2 5.7e-08 32.4 4.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834658|ref|YP_004409386.1| - 2.3e-07 30.3 12.9 0.0018 18.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330834658|ref|YP_004409386.1| - 4.5e-07 30.2 1.9 0.0011 19.3 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330834658|ref|YP_004409386.1| - 3e-06 27.1 11.5 2.2e-05 24.4 4.8 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330834658|ref|YP_004409386.1| - 1.1e-05 25.3 8.5 0.013 15.7 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330834658|ref|YP_004409386.1| - 3.3e-05 24.1 14.8 0.0076 16.7 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330834658|ref|YP_004409386.1| - 3.9e-05 23.9 0.6 0.2 11.9 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330834658|ref|YP_004409386.1| - 7e-05 23.3 9.4 0.076 13.5 0.1 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|330834658|ref|YP_004409386.1| - 0.00019 21.7 9.6 0.069 13.5 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|330834658|ref|YP_004409386.1| - 0.00042 21.0 8.3 0.0065 17.1 1.6 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain DUF2761 PF10959.3 gi|330834658|ref|YP_004409386.1| - 0.0045 16.5 0.0 0.0058 16.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2761) MarR_2 PF12802.2 gi|330834659|ref|YP_004409387.1| - 8.7e-05 22.1 0.0 0.0001 21.8 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|330834659|ref|YP_004409387.1| - 0.00015 21.4 0.0 0.00018 21.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|330834659|ref|YP_004409387.1| - 0.00077 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|330834659|ref|YP_004409387.1| - 0.0017 17.8 0.2 0.0017 17.7 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit DUF2250 PF10007.4 gi|330834659|ref|YP_004409387.1| - 0.0022 17.8 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|330834659|ref|YP_004409387.1| - 0.0032 17.0 0.0 0.0044 16.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|330834659|ref|YP_004409387.1| - 0.011 15.4 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|330834659|ref|YP_004409387.1| - 0.015 15.0 0.1 0.024 14.4 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sulfolobus_pRN PF05584.6 gi|330834659|ref|YP_004409387.1| - 0.083 12.8 0.1 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_27 PF13463.1 gi|330834659|ref|YP_004409387.1| - 0.12 12.7 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TMF_TATA_bd PF12325.3 gi|330834663|ref|YP_004409391.1| - 0.024 14.3 6.1 0.025 14.2 4.2 1.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Microtub_assoc PF07989.6 gi|330834663|ref|YP_004409391.1| - 0.041 13.7 4.3 0.059 13.2 2.8 1.5 1 1 0 1 1 1 0 Microtubule associated DUF2051 PF09738.4 gi|330834663|ref|YP_004409391.1| - 0.061 12.6 5.2 0.063 12.5 3.6 1.0 1 0 0 1 1 1 0 Double stranded RNA binding protein (DUF2051) T4SS PF07996.6 gi|330834663|ref|YP_004409391.1| - 0.064 13.1 0.4 0.066 13.0 0.3 1.1 1 0 0 1 1 1 0 Type IV secretion system proteins DUF4446 PF14584.1 gi|330834663|ref|YP_004409391.1| - 0.15 11.9 2.6 0.16 11.8 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) AKNA PF12443.3 gi|330834663|ref|YP_004409391.1| - 0.2 11.6 2.0 0.2 11.6 1.4 1.1 1 0 0 1 1 1 0 AT-hook-containing transcription factor Shugoshin_N PF07558.6 gi|330834663|ref|YP_004409391.1| - 0.24 11.1 3.1 1.5 8.5 0.4 2.2 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region DMAP1 PF05499.7 gi|330834663|ref|YP_004409391.1| - 0.32 10.5 5.0 0.37 10.3 3.5 1.1 1 0 0 1 1 1 0 DNA methyltransferase 1-associated protein 1 (DMAP1) GrpE PF01025.14 gi|330834663|ref|YP_004409391.1| - 0.33 10.4 3.2 0.33 10.4 2.2 1.0 1 0 0 1 1 1 0 GrpE THOC7 PF05615.8 gi|330834663|ref|YP_004409391.1| - 0.5 10.6 6.3 0.56 10.4 4.4 1.0 1 0 0 1 1 1 0 Tho complex subunit 7 Bap31 PF05529.7 gi|330834663|ref|YP_004409391.1| - 0.54 9.6 3.0 0.55 9.6 2.1 1.1 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like IncA PF04156.9 gi|330834663|ref|YP_004409391.1| - 0.74 9.3 5.5 0.82 9.2 3.8 1.0 1 0 0 1 1 1 0 IncA protein Oxidored_q1 PF00361.15 gi|330834666|ref|YP_004409394.1| - 4.3e-25 88.4 25.5 4.3e-25 88.4 17.6 3.6 4 0 0 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4225 PF13988.1 gi|330834666|ref|YP_004409394.1| - 0.93 8.9 4.0 6.1 6.2 0.2 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF4225) Oxidored_q6 PF01058.17 gi|330834667|ref|YP_004409395.1| - 1.9e-19 69.5 0.1 6.7e-19 67.8 0.1 1.8 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.22 gi|330834667|ref|YP_004409395.1| - 0.00062 19.2 8.4 0.069 12.7 0.5 3.5 3 0 0 3 3 3 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330834667|ref|YP_004409395.1| - 0.15 12.0 3.0 5 7.2 0.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Complex1_49kDa PF00346.14 gi|330834668|ref|YP_004409396.1| - 9.6e-13 47.7 0.0 2.7e-11 42.9 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Oxidored_q1 PF00361.15 gi|330834669|ref|YP_004409397.1| - 2.6e-44 151.5 20.1 2.6e-44 151.5 13.9 2.8 2 1 2 4 4 4 1 NADH-Ubiquinone/plastoquinone (complex I), various chains ADH_N PF08240.7 gi|330834670|ref|YP_004409398.1| - 4.6e-27 93.9 0.0 9e-27 92.9 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330834670|ref|YP_004409398.1| - 9e-20 70.5 0.3 1.7e-19 69.6 0.2 1.5 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|330834670|ref|YP_004409398.1| - 1.9e-13 51.4 0.1 3.5e-13 50.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|330834670|ref|YP_004409398.1| - 0.00027 20.6 0.6 0.00064 19.4 0.4 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AlaDh_PNT_C PF01262.16 gi|330834670|ref|YP_004409398.1| - 0.0078 15.7 0.2 0.014 14.9 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|330834670|ref|YP_004409398.1| - 0.014 15.4 0.5 0.03 14.3 0.3 1.6 1 1 0 1 1 1 0 NADH(P)-binding CMAS PF02353.15 gi|330834670|ref|YP_004409398.1| - 0.026 13.6 0.1 0.038 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase CPSase_L_chain PF00289.17 gi|330834670|ref|YP_004409398.1| - 0.032 14.3 0.0 0.077 13.0 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|330834670|ref|YP_004409398.1| - 0.077 12.1 0.2 0.15 11.2 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-N PF14463.1 gi|330834670|ref|YP_004409398.1| - 0.081 12.5 0.3 0.26 10.8 0.1 1.9 1 1 0 1 1 1 0 E1 N-terminal domain ELFV_dehydrog PF00208.16 gi|330834670|ref|YP_004409398.1| - 0.087 12.3 0.4 0.13 11.8 0.3 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CBS PF00571.23 gi|330834671|ref|YP_004409399.1| - 1.6e-30 104.5 1.4 3.9e-14 52.1 0.0 2.1 2 0 0 2 2 2 2 CBS domain ADH_N PF08240.7 gi|330834672|ref|YP_004409400.1| - 6.1e-32 109.6 0.7 6.1e-32 109.6 0.5 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330834672|ref|YP_004409400.1| - 8.5e-31 106.2 0.1 1.5e-30 105.4 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|330834672|ref|YP_004409400.1| - 1.7e-07 32.2 0.0 8.9e-07 29.8 0.0 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.11 gi|330834672|ref|YP_004409400.1| - 0.069 13.5 0.2 0.13 12.6 0.2 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330834672|ref|YP_004409400.1| - 0.096 11.8 0.2 0.16 11.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.16 gi|330834672|ref|YP_004409400.1| - 1.1 9.0 7.3 0.066 13.0 1.4 1.7 2 0 0 2 2 2 0 ThiF family 3HCDH_N PF02737.13 gi|330834673|ref|YP_004409401.1| - 2.9e-58 196.5 0.2 4.7e-58 195.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|330834673|ref|YP_004409401.1| - 3.2e-41 139.6 0.0 2.1e-27 95.3 0.0 2.9 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMP-binding_C_2 PF14535.1 gi|330834674|ref|YP_004409402.1| - 2.1e-15 56.5 0.0 3.7e-15 55.7 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.23 gi|330834674|ref|YP_004409402.1| - 2e-06 26.5 0.0 3.5e-06 25.6 0.0 1.3 1 1 0 1 1 1 1 AMP-binding enzyme GDE_C PF06202.9 gi|330834675|ref|YP_004409403.1| - 3.8e-113 377.9 0.0 5e-113 377.5 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.3 gi|330834675|ref|YP_004409403.1| - 1.6e-49 168.1 0.5 2.4e-49 167.5 0.3 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.8 gi|330834675|ref|YP_004409403.1| - 9.9e-08 31.0 0.2 1.8e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 Bac_rhamnosid PF05592.6 gi|330834675|ref|YP_004409403.1| - 0.00011 20.5 0.0 0.00016 20.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Glyco_hydro_15 PF00723.16 gi|330834676|ref|YP_004409404.1| - 2.5e-15 55.9 0.1 8.3e-10 37.7 0.1 3.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 NTP_transferase PF00483.18 gi|330834677|ref|YP_004409405.1| - 1.9e-37 128.9 0.0 2.7e-37 128.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|330834677|ref|YP_004409405.1| - 5.5e-09 35.1 19.7 0.0035 16.7 1.0 5.4 1 1 4 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|330834677|ref|YP_004409405.1| - 0.00024 20.6 5.7 0.046 13.2 0.3 3.5 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|330834677|ref|YP_004409405.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Glyco_hydro_57 PF03065.10 gi|330834678|ref|YP_004409406.1| - 3.9e-66 223.4 1.8 2.6e-65 220.6 0.7 2.4 2 1 0 2 2 2 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.16 gi|330834678|ref|YP_004409406.1| - 0.0067 16.0 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.15 gi|330834679|ref|YP_004409407.1| - 1.1e-30 106.3 0.0 1.8e-30 105.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|330834679|ref|YP_004409407.1| - 5.5e-27 94.8 0.0 8e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.1 gi|330834679|ref|YP_004409407.1| - 1.8e-10 41.1 0.0 3.2e-10 40.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|330834679|ref|YP_004409407.1| - 1e-07 32.2 0.0 2e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|330834679|ref|YP_004409407.1| - 0.0011 19.1 0.1 0.0099 16.1 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330834679|ref|YP_004409407.1| - 0.05 13.3 0.3 1.1 9.0 0.0 2.5 2 1 0 2 2 2 0 Glycosyltransferase Family 4 ThiS PF02597.15 gi|330834680|ref|YP_004409408.1| - 1.6e-10 41.2 0.3 1.8e-10 41.0 0.2 1.0 1 0 0 1 1 1 1 ThiS family TGS PF02824.16 gi|330834680|ref|YP_004409408.1| - 1.6e-05 24.6 0.1 1.9e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 TGS domain ThiS-like PF14453.1 gi|330834680|ref|YP_004409408.1| - 4.7e-05 23.1 0.2 7.1e-05 22.5 0.2 1.3 1 1 0 1 1 1 1 ThiS-like ubiquitin Ub-Mut7C PF14451.1 gi|330834680|ref|YP_004409408.1| - 0.012 15.0 0.1 0.014 14.8 0.0 1.1 1 0 0 1 1 1 0 Mut7-C ubiquitin TrkA_C PF02080.16 gi|330834680|ref|YP_004409408.1| - 0.012 15.1 0.1 0.013 15.0 0.1 1.2 1 0 0 1 1 1 0 TrkA-C domain DAO PF01266.19 gi|330834682|ref|YP_004409410.1| - 4.3e-37 127.8 0.0 5.4e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330834682|ref|YP_004409410.1| - 9.5e-07 28.8 0.1 7.6e-05 22.6 0.0 2.3 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330834682|ref|YP_004409410.1| - 2.7e-06 26.6 0.0 3.3e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|330834682|ref|YP_004409410.1| - 7.2e-06 25.9 0.0 1.5e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|330834682|ref|YP_004409410.1| - 0.0005 19.5 0.0 0.00082 18.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HI0933_like PF03486.9 gi|330834682|ref|YP_004409410.1| - 0.00081 17.9 0.3 0.013 14.0 0.1 2.4 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|330834682|ref|YP_004409410.1| - 0.0017 17.2 0.2 0.0027 16.6 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|330834682|ref|YP_004409410.1| - 0.0022 17.6 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|330834682|ref|YP_004409410.1| - 0.0025 17.9 0.1 0.0052 16.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330834682|ref|YP_004409410.1| - 0.0041 17.4 2.7 0.028 14.8 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330834682|ref|YP_004409410.1| - 0.0051 15.9 0.1 0.012 14.7 0.1 1.6 1 0 0 1 1 1 1 Thi4 family ApbA PF02558.11 gi|330834682|ref|YP_004409410.1| - 0.012 14.9 0.2 0.025 14.0 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|330834682|ref|YP_004409410.1| - 0.025 13.4 0.1 0.045 12.5 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|330834682|ref|YP_004409410.1| - 0.042 14.1 0.0 0.081 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|330834682|ref|YP_004409410.1| - 0.049 12.7 0.0 0.086 11.8 0.0 1.5 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|330834682|ref|YP_004409410.1| - 0.16 11.5 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1955 PF09205.5 gi|330834683|ref|YP_004409411.1| - 2.3e-63 212.5 8.8 2.6e-63 212.3 6.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) TPR_7 PF13176.1 gi|330834683|ref|YP_004409411.1| - 0.022 14.5 0.1 0.57 10.1 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF4523 PF15023.1 gi|330834683|ref|YP_004409411.1| - 0.074 12.5 0.1 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) PK PF00224.16 gi|330834684|ref|YP_004409412.1| - 1.9e-81 273.4 0.1 2.6e-81 272.9 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|330834684|ref|YP_004409412.1| - 2e-18 66.0 0.0 4.2e-18 64.9 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Acetyltransf_1 PF00583.19 gi|330834685|ref|YP_004409413.1| - 9.1e-13 48.0 0.0 2e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|330834685|ref|YP_004409413.1| - 2.9e-10 40.4 0.0 3.8e-10 40.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330834685|ref|YP_004409413.1| - 8.5e-09 35.5 0.0 1.1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330834685|ref|YP_004409413.1| - 2.8e-08 33.8 0.0 4.4e-08 33.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|330834685|ref|YP_004409413.1| - 2.5e-07 30.7 0.0 7.6e-07 29.2 0.0 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|330834685|ref|YP_004409413.1| - 5.6e-06 26.0 0.0 9.5e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|330834685|ref|YP_004409413.1| - 0.00031 20.5 0.1 0.019 14.8 0.0 2.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330834685|ref|YP_004409413.1| - 0.0042 16.9 0.0 0.0069 16.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|330834685|ref|YP_004409413.1| - 0.044 13.7 0.0 0.076 12.9 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain HTH_3 PF01381.17 gi|330834686|ref|YP_004409414.1| - 0.00011 21.9 0.0 0.00024 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|330834686|ref|YP_004409414.1| - 0.00023 20.8 0.0 0.00043 20.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|330834686|ref|YP_004409414.1| - 0.003 16.9 0.0 0.0055 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_8 PF02954.14 gi|330834686|ref|YP_004409414.1| - 0.007 15.8 0.0 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_19 PF12844.2 gi|330834686|ref|YP_004409414.1| - 0.0088 16.0 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0175 PF03683.8 gi|330834686|ref|YP_004409414.1| - 0.012 15.0 0.0 0.026 14.0 0.0 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0175) HTH_1 PF00126.22 gi|330834686|ref|YP_004409414.1| - 0.028 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RE_BstXI PF09552.5 gi|330834686|ref|YP_004409414.1| - 0.049 12.6 0.0 0.054 12.5 0.0 1.1 1 0 0 1 1 1 0 BstXI restriction endonuclease HTH_23 PF13384.1 gi|330834686|ref|YP_004409414.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_31 PF13560.1 gi|330834686|ref|YP_004409414.1| - 0.091 12.9 0.0 0.094 12.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DMRL_synthase PF00885.14 gi|330834687|ref|YP_004409415.1| - 0.067 12.8 0.2 0.11 12.1 0.2 1.5 1 0 0 1 1 1 0 6,7-dimethyl-8-ribityllumazine synthase BphX PF06139.7 gi|330834687|ref|YP_004409415.1| - 0.13 11.8 3.7 0.2 11.2 2.5 1.5 1 1 0 1 1 1 0 BphX-like DUF1270 PF06900.6 gi|330834687|ref|YP_004409415.1| - 2.3 8.4 7.2 0.6 10.2 0.6 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1270) DUF3128 PF11326.3 gi|330834688|ref|YP_004409416.1| - 0.04 14.0 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3128) Creatininase PF02633.9 gi|330834690|ref|YP_004409418.1| - 2.6e-48 164.1 0.0 2.9e-48 164.0 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Tox-PL-2 PF15643.1 gi|330834690|ref|YP_004409418.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 2 Ribonuc_L-PSP PF01042.16 gi|330834693|ref|YP_004409421.1| - 4.6e-37 126.4 0.0 5.1e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP CbiA PF01656.18 gi|330834695|ref|YP_004409423.1| - 2e-14 53.4 0.0 2.4e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330834695|ref|YP_004409423.1| - 2.6e-06 27.4 0.0 3.6e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|330834695|ref|YP_004409423.1| - 0.0013 17.8 0.1 0.0016 17.5 0.1 1.3 1 1 0 1 1 1 1 Anion-transporting ATPase SKI PF01202.17 gi|330834695|ref|YP_004409423.1| - 0.0094 15.8 0.0 0.056 13.3 0.0 1.9 2 0 0 2 2 2 1 Shikimate kinase MipZ PF09140.6 gi|330834695|ref|YP_004409423.1| - 0.02 13.9 0.0 0.027 13.5 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ PALP PF00291.20 gi|330834696|ref|YP_004409424.1| - 1.2e-54 185.6 0.0 1.4e-54 185.4 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.10 gi|330834696|ref|YP_004409424.1| - 0.04 13.5 0.3 0.067 12.8 0.2 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Succ_CoA_lig PF13607.1 gi|330834697|ref|YP_004409425.1| - 9.2e-45 151.6 0.0 1.8e-44 150.7 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp_5 PF13549.1 gi|330834697|ref|YP_004409425.1| - 1.8e-43 148.3 0.1 3.6e-43 147.3 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain CoA_binding_2 PF13380.1 gi|330834697|ref|YP_004409425.1| - 3.4e-24 85.2 0.0 1e-23 83.7 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|330834697|ref|YP_004409425.1| - 3.4e-14 53.1 0.8 1.1e-13 51.4 0.2 2.2 2 0 0 2 2 2 1 CoA binding domain RimK PF08443.6 gi|330834697|ref|YP_004409425.1| - 8.5e-06 25.3 0.0 2.4e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330834697|ref|YP_004409425.1| - 0.00056 19.7 0.0 0.001 18.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|330834697|ref|YP_004409425.1| - 0.0019 17.6 0.1 0.18 11.1 0.0 3.0 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp PF02222.17 gi|330834697|ref|YP_004409425.1| - 0.016 14.6 0.3 0.12 11.6 0.0 2.4 3 0 0 3 3 3 0 ATP-grasp domain F420_oxidored PF03807.12 gi|330834697|ref|YP_004409425.1| - 0.02 15.2 0.4 0.11 12.9 0.1 2.4 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Dala_Dala_lig_C PF07478.8 gi|330834697|ref|YP_004409425.1| - 0.034 13.5 0.0 0.061 12.6 0.0 1.4 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus UBA_2 PF08587.6 gi|330834697|ref|YP_004409425.1| - 0.041 14.0 0.0 0.2 11.8 0.0 2.2 1 0 0 1 1 1 0 Ubiquitin associated domain (UBA) NAD_Gly3P_dh_N PF01210.18 gi|330834697|ref|YP_004409425.1| - 0.073 12.7 0.0 0.35 10.6 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|330834697|ref|YP_004409425.1| - 0.082 12.7 0.0 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ProRS-C_1 PF09180.6 gi|330834698|ref|YP_004409426.1| - 0.052 13.4 0.0 0.075 12.9 0.0 1.2 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal HTH_psq PF05225.11 gi|330834698|ref|YP_004409426.1| - 0.12 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MarR_2 PF12802.2 gi|330834699|ref|YP_004409427.1| - 9e-11 41.2 0.0 1.3e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|330834699|ref|YP_004409427.1| - 4.4e-10 39.0 1.2 5.5e-10 38.6 0.9 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|330834699|ref|YP_004409427.1| - 7e-10 38.4 0.2 1.3e-09 37.6 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|330834699|ref|YP_004409427.1| - 4.6e-09 35.8 0.1 6.6e-09 35.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|330834699|ref|YP_004409427.1| - 2.1e-08 34.3 0.0 3.2e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|330834699|ref|YP_004409427.1| - 3.8e-06 26.7 0.0 6.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.1 gi|330834699|ref|YP_004409427.1| - 5.9e-05 22.3 0.2 9.8e-05 21.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RuvB_C PF05491.8 gi|330834699|ref|YP_004409427.1| - 0.00011 21.6 0.0 0.00021 20.8 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_DeoR PF08220.7 gi|330834699|ref|YP_004409427.1| - 0.00045 19.6 0.0 0.0011 18.4 0.0 1.6 2 0 0 2 2 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|330834699|ref|YP_004409427.1| - 0.00049 19.6 0.1 0.0009 18.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|330834699|ref|YP_004409427.1| - 0.0011 18.7 0.0 0.0044 16.7 0.0 2.0 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.16 gi|330834699|ref|YP_004409427.1| - 0.0026 17.1 0.1 0.0063 15.9 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|330834699|ref|YP_004409427.1| - 0.0028 17.6 0.1 0.0054 16.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF387 PF04079.11 gi|330834699|ref|YP_004409427.1| - 0.005 16.2 0.1 0.011 15.1 0.1 1.6 1 1 1 2 2 2 1 Putative transcriptional regulators (Ypuh-like) TetR_N PF00440.18 gi|330834699|ref|YP_004409427.1| - 0.0065 16.0 0.3 3 7.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family DUF2042 PF09743.4 gi|330834699|ref|YP_004409427.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) Cullin_Nedd8 PF10557.4 gi|330834699|ref|YP_004409427.1| - 0.021 14.6 0.2 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Cullin protein neddylation domain DUF3143 PF11341.3 gi|330834699|ref|YP_004409427.1| - 0.022 14.6 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3143) Penicillinase_R PF03965.11 gi|330834699|ref|YP_004409427.1| - 0.022 14.8 0.3 0.04 14.0 0.2 1.5 1 1 0 1 1 1 0 Penicillinase repressor HTH_19 PF12844.2 gi|330834699|ref|YP_004409427.1| - 0.024 14.6 0.2 0.046 13.7 0.1 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|330834699|ref|YP_004409427.1| - 0.026 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|330834699|ref|YP_004409427.1| - 0.035 13.6 0.1 0.082 12.5 0.1 1.5 1 0 0 1 1 1 0 HTH DNA binding domain DUF4393 PF14337.1 gi|330834699|ref|YP_004409427.1| - 0.035 13.5 0.1 0.039 13.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_5 PF01022.15 gi|330834699|ref|YP_004409427.1| - 0.057 13.0 0.1 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|330834699|ref|YP_004409427.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator F-112 PF09645.5 gi|330834699|ref|YP_004409427.1| - 0.11 12.3 0.1 0.14 12.0 0.1 1.2 1 0 0 1 1 1 0 F-112 protein HTH_36 PF13730.1 gi|330834699|ref|YP_004409427.1| - 0.11 12.6 0.3 0.19 11.8 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain Poxvirus_B22R_N PF13169.1 gi|330834700|ref|YP_004409428.1| - 0.06 13.5 0.2 0.06 13.5 0.2 1.5 2 0 0 2 2 2 0 Poxvirus B22R protein N-terminal PBS_linker_poly PF00427.16 gi|330834700|ref|YP_004409428.1| - 0.078 12.6 0.1 0.11 12.1 0.1 1.2 1 0 0 1 1 1 0 Phycobilisome Linker polypeptide Myb_DNA-bind_3 PF12776.2 gi|330834700|ref|YP_004409428.1| - 0.1 13.2 0.2 0.1 13.2 0.1 1.6 2 0 0 2 2 2 0 Myb/SANT-like DNA-binding domain Vfa1 PF08432.5 gi|330834700|ref|YP_004409428.1| - 0.24 11.4 7.5 0.3 11.0 5.2 1.2 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 DUF2458 PF10454.4 gi|330834700|ref|YP_004409428.1| - 0.79 9.6 4.7 0.98 9.3 3.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2458) DUF1624 PF07786.7 gi|330834701|ref|YP_004409429.1| - 0.014 14.7 4.5 0.017 14.5 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) Wzy_C PF04932.10 gi|330834701|ref|YP_004409429.1| - 0.063 13.0 9.9 0.079 12.7 6.9 1.3 1 1 0 1 1 1 0 O-Antigen ligase FUN14 PF04930.10 gi|330834701|ref|YP_004409429.1| - 0.11 12.7 10.7 2.5 8.4 7.4 2.1 1 1 0 1 1 1 0 FUN14 family MtrC PF04211.8 gi|330834701|ref|YP_004409429.1| - 0.12 11.3 11.8 0.14 11.1 7.6 1.6 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit C DUF883 PF05957.8 gi|330834701|ref|YP_004409429.1| - 0.13 12.6 0.4 14 6.1 0.3 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) ECF-ribofla_trS PF07155.7 gi|330834701|ref|YP_004409429.1| - 0.13 11.9 9.5 0.17 11.6 6.6 1.0 1 0 0 1 1 1 0 ECF-type riboflavin transporter, S component DUF2628 PF10947.3 gi|330834701|ref|YP_004409429.1| - 0.13 12.0 2.8 0.2 11.4 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) YuiB PF14068.1 gi|330834701|ref|YP_004409429.1| - 0.16 12.2 9.2 0.26 11.6 6.4 1.4 1 1 0 1 1 1 0 Putative membrane protein TOM13 PF08219.6 gi|330834701|ref|YP_004409429.1| - 0.25 11.1 3.3 2 8.2 1.0 2.1 2 0 0 2 2 2 0 Outer membrane protein TOM13 O-antigen_lig PF13425.1 gi|330834701|ref|YP_004409429.1| - 0.45 10.4 10.8 0.61 10.0 7.5 1.3 1 1 0 1 1 1 0 O-antigen ligase like membrane protein ATPase_gene1 PF09527.5 gi|330834701|ref|YP_004409429.1| - 0.93 9.3 13.7 3.1 7.6 5.9 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) MreD PF04093.7 gi|330834701|ref|YP_004409429.1| - 0.96 9.2 8.7 0.48 10.2 3.8 1.9 2 0 0 2 2 2 0 rod shape-determining protein MreD DUF2798 PF11391.3 gi|330834701|ref|YP_004409429.1| - 3 7.6 7.1 1 9.1 0.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2798) DUF3487 PF11990.3 gi|330834701|ref|YP_004409429.1| - 8.1 5.8 12.5 3.2 7.1 6.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) Peptidase_M28 PF04389.12 gi|330834704|ref|YP_004409432.1| - 5.3e-12 45.8 0.1 7.7e-11 42.0 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M28 Ndr PF03096.9 gi|330834705|ref|YP_004409433.1| - 0.0025 16.3 0.0 0.0031 16.0 0.0 1.0 1 0 0 1 1 1 1 Ndr family UVR PF02151.14 gi|330834705|ref|YP_004409433.1| - 0.0066 15.9 1.0 0.013 14.9 0.4 1.8 1 1 0 1 1 1 1 UvrB/uvrC motif DUF148 PF02520.12 gi|330834705|ref|YP_004409433.1| - 0.014 15.1 0.2 0.024 14.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF148 FlgI PF02119.11 gi|330834705|ref|YP_004409433.1| - 0.027 13.1 0.3 0.035 12.7 0.2 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein DUF4252 PF14060.1 gi|330834705|ref|YP_004409433.1| - 0.11 12.0 1.9 0.15 11.6 0.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4252) BcrAD_BadFG PF01869.15 gi|330834706|ref|YP_004409434.1| - 1.8e-33 115.9 0.7 2.7e-33 115.4 0.5 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family PmbA_TldD PF01523.11 gi|330834707|ref|YP_004409435.1| - 4.3e-14 52.4 0.0 1.1e-13 51.1 0.0 1.7 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Alpha_kinase PF02816.13 gi|330834707|ref|YP_004409435.1| - 0.03 13.9 0.1 0.051 13.2 0.0 1.3 1 0 0 1 1 1 0 Alpha-kinase family DUF4369 PF14289.1 gi|330834707|ref|YP_004409435.1| - 0.075 13.0 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4369) UPF0066 PF01980.11 gi|330834708|ref|YP_004409436.1| - 6.8e-38 129.2 0.0 8.6e-38 128.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 XdhC_C PF13478.1 gi|330834709|ref|YP_004409437.1| - 2.1e-18 66.9 0.1 2.8e-18 66.5 0.0 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain Polyketide_cyc2 PF10604.4 gi|330834710|ref|YP_004409438.1| - 0.017 15.3 0.0 0.021 15.0 0.0 1.1 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF3337 PF11816.3 gi|330834710|ref|YP_004409438.1| - 0.069 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3337) VWA_2 PF13519.1 gi|330834711|ref|YP_004409439.1| - 6.4e-16 58.9 0.0 2.1e-15 57.2 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|330834711|ref|YP_004409439.1| - 1.4e-15 57.4 0.0 4.1e-15 55.9 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|330834711|ref|YP_004409439.1| - 1.2e-13 51.0 0.0 5.4e-13 48.9 0.0 2.0 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.4 gi|330834711|ref|YP_004409439.1| - 1.7e-05 24.8 0.0 3.3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 VWA-like domain (DUF2201) BPD_transp_1 PF00528.17 gi|330834712|ref|YP_004409440.1| - 3.6e-12 46.1 13.1 3.6e-12 46.1 9.1 3.1 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component oligo_HPY PF08352.7 gi|330834714|ref|YP_004409442.1| - 3.7e-07 30.4 2.8 0.00016 21.9 1.9 2.4 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region ABC_tran PF00005.22 gi|330834714|ref|YP_004409442.1| - 3.7e-06 27.2 0.0 5.4e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|330834715|ref|YP_004409443.1| - 1.3e-05 25.4 0.0 2.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region DEAD PF00270.24 gi|330834716|ref|YP_004409444.1| - 1.4e-18 66.9 0.0 5.1e-18 65.1 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330834716|ref|YP_004409444.1| - 3.7e-13 49.1 0.0 7.7e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|330834716|ref|YP_004409444.1| - 1.5e-05 24.9 0.0 4e-05 23.5 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|330834716|ref|YP_004409444.1| - 7.1e-05 22.9 0.0 0.00051 20.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|330834716|ref|YP_004409444.1| - 0.0013 18.4 0.5 0.0054 16.4 0.0 2.2 3 0 0 3 3 3 1 Archaeal ATPase SNF2_N PF00176.18 gi|330834716|ref|YP_004409444.1| - 0.014 14.1 0.1 0.022 13.5 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_17 PF13207.1 gi|330834716|ref|YP_004409444.1| - 0.041 14.6 0.9 0.16 12.7 0.1 2.5 3 1 0 3 3 3 0 AAA domain IstB_IS21 PF01695.12 gi|330834716|ref|YP_004409444.1| - 0.051 12.9 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.1 gi|330834716|ref|YP_004409444.1| - 0.073 13.3 0.1 0.21 11.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|330834717|ref|YP_004409445.1| - 1.4e-28 99.8 0.0 2.1e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834717|ref|YP_004409445.1| - 6.3e-12 46.0 0.1 6.7e-05 22.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|330834717|ref|YP_004409445.1| - 5.5e-06 25.6 0.0 9.6e-06 24.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|330834717|ref|YP_004409445.1| - 7.9e-06 25.1 0.0 0.0055 15.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|330834717|ref|YP_004409445.1| - 6.6e-05 22.2 0.2 0.27 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330834717|ref|YP_004409445.1| - 0.00033 21.0 0.1 0.0009 19.6 0.1 1.7 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|330834717|ref|YP_004409445.1| - 0.00034 20.0 0.0 0.0007 19.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|330834717|ref|YP_004409445.1| - 0.00088 19.2 0.2 0.0017 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|330834717|ref|YP_004409445.1| - 0.0019 19.0 1.3 0.0089 16.8 0.4 2.3 2 2 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|330834717|ref|YP_004409445.1| - 0.0024 18.0 0.2 0.0058 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|330834717|ref|YP_004409445.1| - 0.0048 15.5 0.0 2.2 6.7 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|330834717|ref|YP_004409445.1| - 0.0097 15.3 0.9 0.066 12.6 0.1 2.2 2 1 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|330834717|ref|YP_004409445.1| - 0.0097 15.6 0.1 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|330834717|ref|YP_004409445.1| - 0.012 15.9 0.0 0.024 14.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|330834717|ref|YP_004409445.1| - 0.015 15.5 0.1 0.095 12.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|330834717|ref|YP_004409445.1| - 0.028 13.2 0.0 0.075 11.8 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|330834717|ref|YP_004409445.1| - 0.047 13.6 0.5 0.068 13.1 0.3 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|330834717|ref|YP_004409445.1| - 0.061 12.7 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|330834717|ref|YP_004409445.1| - 0.093 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|330834717|ref|YP_004409445.1| - 0.11 12.2 0.1 0.93 9.2 0.1 2.2 2 0 0 2 2 2 0 Part of AAA domain AAA_33 PF13671.1 gi|330834717|ref|YP_004409445.1| - 0.12 12.3 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|330834718|ref|YP_004409446.1| - 3.4e-24 85.3 40.2 9.4e-15 54.6 8.3 3.1 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Carboxyl_trans PF01039.17 gi|330834719|ref|YP_004409447.1| - 4.6e-194 645.3 2.4 5.3e-194 645.1 1.6 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|330834719|ref|YP_004409447.1| - 0.00014 21.1 0.9 0.00061 19.0 0.1 2.1 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) NAD_synthase PF02540.12 gi|330834719|ref|YP_004409447.1| - 0.083 11.7 0.1 0.15 10.9 0.1 1.4 1 0 0 1 1 1 0 NAD synthase DEAD PF00270.24 gi|330834721|ref|YP_004409449.1| - 2.6e-29 101.8 0.0 2.1e-28 98.9 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|330834721|ref|YP_004409449.1| - 5.6e-10 39.3 0.0 3e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330834721|ref|YP_004409449.1| - 6.9e-10 38.6 0.0 1.6e-09 37.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|330834721|ref|YP_004409449.1| - 1.1e-05 25.4 0.2 3.8e-05 23.7 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_19 PF13245.1 gi|330834721|ref|YP_004409449.1| - 0.0014 18.3 0.2 0.007 16.1 0.1 2.3 2 0 0 2 2 2 1 Part of AAA domain SNF2_N PF00176.18 gi|330834721|ref|YP_004409449.1| - 0.0017 17.2 0.0 0.003 16.4 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain KaiC PF06745.8 gi|330834721|ref|YP_004409449.1| - 0.0035 16.4 0.0 0.0085 15.2 0.0 1.6 1 0 0 1 1 1 1 KaiC AA_permease PF00324.16 gi|330834722|ref|YP_004409450.1| - 1.2e-23 83.2 49.1 1.2e-23 83.2 34.0 1.5 1 1 1 2 2 2 1 Amino acid permease AA_permease_2 PF13520.1 gi|330834722|ref|YP_004409450.1| - 1.5e-16 59.9 54.8 2.2e-16 59.4 38.0 1.2 1 0 0 1 1 1 1 Amino acid permease Nitro_FeMo-Co PF02579.12 gi|330834723|ref|YP_004409451.1| - 2.1e-07 30.9 0.0 2.7e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PadR PF03551.9 gi|330834724|ref|YP_004409452.1| - 1.8e-15 56.4 0.0 3.8e-15 55.4 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|330834724|ref|YP_004409452.1| - 0.00094 18.9 0.4 0.0027 17.4 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.1 gi|330834724|ref|YP_004409452.1| - 0.029 13.9 0.5 0.051 13.1 0.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Mnd1 PF03962.10 gi|330834724|ref|YP_004409452.1| - 0.034 13.8 0.2 0.049 13.3 0.2 1.3 1 0 0 1 1 1 0 Mnd1 family Med29 PF11568.3 gi|330834724|ref|YP_004409452.1| - 0.04 13.9 0.1 0.053 13.5 0.1 1.2 1 0 0 1 1 1 0 Mediator complex subunit 29 Caudo_TAP PF02413.12 gi|330834724|ref|YP_004409452.1| - 0.044 13.9 0.0 0.16 12.1 0.0 1.8 1 1 0 1 1 1 0 Caudovirales tail fibre assembly protein EMP24_GP25L PF01105.19 gi|330834724|ref|YP_004409452.1| - 0.06 13.0 0.1 0.085 12.5 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD NETI PF14044.1 gi|330834724|ref|YP_004409452.1| - 0.084 12.3 0.3 0.18 11.3 0.2 1.5 1 0 0 1 1 1 0 NETI protein Mrr_N PF14338.1 gi|330834724|ref|YP_004409452.1| - 0.096 12.7 0.4 0.69 10.0 0.0 2.2 2 0 0 2 2 2 0 Mrr N-terminal domain Pro-kuma_activ PF09286.6 gi|330834726|ref|YP_004409454.1| - 1.8e-09 37.8 0.0 5.9e-09 36.1 0.0 1.9 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|330834726|ref|YP_004409454.1| - 8e-08 31.7 2.1 8e-08 31.7 1.4 2.0 2 0 0 2 2 2 1 Subtilase family A2M_N_2 PF07703.9 gi|330834726|ref|YP_004409454.1| - 0.012 15.4 0.2 0.83 9.4 0.0 3.7 5 1 0 5 5 5 0 Alpha-2-macroglobulin family N-terminal region PNGaseA PF12222.3 gi|330834727|ref|YP_004409455.1| - 1.9e-124 415.8 9.4 2.8e-124 415.2 6.5 1.3 1 0 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Endonuclease_5 PF04493.9 gi|330834728|ref|YP_004409456.1| - 8.3e-44 149.4 0.2 1.1e-43 149.0 0.1 1.1 1 0 0 1 1 1 1 Endonuclease V NurA PF09376.5 gi|330834728|ref|YP_004409456.1| - 0.078 12.4 0.3 4.8 6.5 0.0 2.2 1 1 0 2 2 2 0 NurA domain DSPc PF00782.15 gi|330834729|ref|YP_004409457.1| - 7.4e-10 38.5 0.0 1.3e-09 37.7 0.0 1.4 1 1 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|330834729|ref|YP_004409457.1| - 8.4e-09 35.1 0.0 9.7e-09 34.8 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase PTPlike_phytase PF14566.1 gi|330834729|ref|YP_004409457.1| - 9.3e-08 32.2 0.0 1.2e-07 31.9 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.7 gi|330834729|ref|YP_004409457.1| - 8.6e-05 22.0 0.0 0.00011 21.7 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) Y_phosphatase3 PF13350.1 gi|330834729|ref|YP_004409457.1| - 0.00022 21.4 0.1 0.00078 19.7 0.1 1.6 1 1 1 2 2 2 1 Tyrosine phosphatase family GATase PF00117.23 gi|330834730|ref|YP_004409458.1| - 7.4e-35 120.1 0.0 8.2e-35 119.9 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330834730|ref|YP_004409458.1| - 3.6e-09 36.3 0.1 3.6e-08 33.1 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|330834730|ref|YP_004409458.1| - 0.0015 17.2 0.0 0.0024 16.6 0.0 1.3 1 0 0 1 1 1 1 Homoserine O-succinyltransferase DAO PF01266.19 gi|330834731|ref|YP_004409459.1| - 1.5e-11 43.8 0.0 1.1e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330834731|ref|YP_004409459.1| - 3.5e-09 36.5 0.2 1e-08 35.0 0.1 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|330834731|ref|YP_004409459.1| - 1.8e-08 33.8 3.8 0.00073 18.7 0.0 2.9 2 1 0 3 3 3 2 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|330834731|ref|YP_004409459.1| - 1.2e-07 32.0 1.9 0.00095 19.5 0.2 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330834731|ref|YP_004409459.1| - 1.8e-07 30.5 1.1 0.0015 17.7 0.0 2.3 2 0 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.19 gi|330834731|ref|YP_004409459.1| - 6.8e-06 25.1 1.0 0.019 13.8 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|330834731|ref|YP_004409459.1| - 7.1e-06 26.2 0.0 0.00057 19.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330834731|ref|YP_004409459.1| - 6.3e-05 21.6 1.9 0.02 13.4 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|330834731|ref|YP_004409459.1| - 0.0031 17.4 0.0 0.0094 15.8 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|330834731|ref|YP_004409459.1| - 0.0067 15.5 0.0 0.029 13.4 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|330834731|ref|YP_004409459.1| - 0.01 14.9 0.4 0.023 13.7 0.1 1.6 2 0 0 2 2 2 0 FAD binding domain AlaDh_PNT_C PF01262.16 gi|330834731|ref|YP_004409459.1| - 0.012 15.1 0.9 0.27 10.8 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.17 gi|330834731|ref|YP_004409459.1| - 0.028 13.2 0.2 0.028 13.2 0.1 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A XdhC_C PF13478.1 gi|330834731|ref|YP_004409459.1| - 0.049 13.9 0.0 4.3 7.6 0.0 2.2 2 0 0 2 2 2 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|330834731|ref|YP_004409459.1| - 0.072 12.2 0.5 0.69 9.0 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ribosomal_S2 PF00318.15 gi|330834731|ref|YP_004409459.1| - 0.09 11.9 0.2 0.14 11.3 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein S2 DUF2299 PF10061.4 gi|330834732|ref|YP_004409460.1| - 2e-41 140.6 0.0 2.3e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) IFR3_antag PF14754.1 gi|330834732|ref|YP_004409460.1| - 0.11 11.4 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 Papain-like auto-proteinase DUF2299 PF10061.4 gi|330834733|ref|YP_004409461.1| - 2.2e-38 130.7 0.1 2.7e-38 130.5 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) MFS_1 PF07690.11 gi|330834734|ref|YP_004409462.1| - 8.1e-19 67.5 30.7 5e-10 38.6 9.8 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330834734|ref|YP_004409462.1| - 0.00031 19.4 4.6 0.00031 19.4 3.2 3.1 1 1 2 3 3 3 1 Sugar (and other) transporter TauE PF01925.14 gi|330834734|ref|YP_004409462.1| - 0.00053 19.5 20.5 0.00053 19.5 14.2 2.5 1 1 1 2 2 2 1 Sulfite exporter TauE/SafE MFS_1_like PF12832.2 gi|330834734|ref|YP_004409462.1| - 0.037 13.8 1.8 5.8 6.7 0.0 3.2 3 0 0 3 3 3 0 MFS_1 like family MFS_3 PF05977.8 gi|330834734|ref|YP_004409462.1| - 9.2 4.2 16.4 28 2.6 11.4 1.7 1 1 0 1 1 1 0 Transmembrane secretion effector FAA_hydrolase PF01557.13 gi|330834735|ref|YP_004409463.1| - 4.5e-70 235.5 0.0 5.5e-70 235.2 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2173 PF09941.4 gi|330834736|ref|YP_004409464.1| - 2.1e-44 149.8 3.8 2.3e-44 149.7 2.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) MgtC PF02308.11 gi|330834736|ref|YP_004409464.1| - 0.086 12.6 0.1 0.094 12.5 0.1 1.1 1 0 0 1 1 1 0 MgtC family Robl_LC7 PF03259.12 gi|330834736|ref|YP_004409464.1| - 0.12 11.9 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Roadblock/LC7 domain DUF573 PF04504.9 gi|330834737|ref|YP_004409465.1| - 0.096 12.9 2.2 0.17 12.1 0.7 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF573 MFS_1 PF07690.11 gi|330834739|ref|YP_004409467.1| - 1.2e-11 44.0 22.4 6.3e-09 34.9 12.5 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.11 gi|330834739|ref|YP_004409467.1| - 1e-05 25.1 4.8 1e-05 25.1 3.3 2.0 1 1 1 2 2 2 1 Ion channel regulatory protein UNC-93 ResIII PF04851.10 gi|330834740|ref|YP_004409468.1| - 2e-18 66.8 0.0 4.1e-17 62.6 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330834740|ref|YP_004409468.1| - 1.1e-17 63.6 0.1 1.5e-16 60.0 0.0 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330834740|ref|YP_004409468.1| - 6.7e-14 51.7 0.0 1.9e-12 46.9 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|330834740|ref|YP_004409468.1| - 0.0011 19.0 0.0 0.028 14.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|330834740|ref|YP_004409468.1| - 0.0013 17.8 0.0 0.0042 16.1 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|330834740|ref|YP_004409468.1| - 0.0064 16.0 0.0 0.49 9.9 0.0 2.6 1 1 1 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|330834740|ref|YP_004409468.1| - 0.0067 16.1 0.0 0.034 13.8 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain Flavi_DEAD PF07652.9 gi|330834740|ref|YP_004409468.1| - 0.0068 16.1 0.2 0.11 12.3 0.0 2.8 2 1 0 2 2 2 1 Flavivirus DEAD domain T2SE PF00437.15 gi|330834740|ref|YP_004409468.1| - 0.013 14.4 0.0 0.026 13.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SecA_DEAD PF07517.9 gi|330834740|ref|YP_004409468.1| - 0.018 14.3 0.0 0.57 9.4 0.0 2.3 2 1 0 2 2 2 0 SecA DEAD-like domain AAA_26 PF13500.1 gi|330834740|ref|YP_004409468.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AMP-binding PF00501.23 gi|330834741|ref|YP_004409469.1| - 4.8e-88 295.3 0.0 5.7e-88 295.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330834741|ref|YP_004409469.1| - 1.7e-21 76.9 0.0 4.1e-21 75.7 0.0 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain TENA_THI-4 PF03070.11 gi|330834742|ref|YP_004409470.1| - 3.1e-39 134.9 0.3 3.5e-39 134.7 0.2 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family vATP-synt_AC39 PF01992.11 gi|330834742|ref|YP_004409470.1| - 0.046 12.8 0.0 0.089 11.8 0.0 1.5 2 0 0 2 2 2 0 ATP synthase (C/AC39) subunit Sec3-PIP2_bind PF15277.1 gi|330834742|ref|YP_004409470.1| - 0.093 12.6 0.1 0.5 10.2 0.0 2.1 2 0 0 2 2 2 0 Exocyst complex component SEC3 N-terminal PIP2 binding PH GATase PF00117.23 gi|330834743|ref|YP_004409471.1| - 3.5e-18 65.7 0.0 4.5e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330834743|ref|YP_004409471.1| - 1.6e-08 34.2 0.6 3.6e-08 33.1 0.1 1.8 2 1 0 2 2 2 1 Peptidase C26 HTS PF04204.11 gi|330834743|ref|YP_004409471.1| - 0.003 16.3 0.0 0.0083 14.8 0.0 1.6 1 1 1 2 2 2 1 Homoserine O-succinyltransferase Methyltransf_31 PF13847.1 gi|330834744|ref|YP_004409472.1| - 9.8e-18 64.1 0.0 1.1e-17 64.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330834744|ref|YP_004409472.1| - 4.3e-16 59.1 0.0 6e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330834744|ref|YP_004409472.1| - 4.6e-15 55.7 0.0 5.2e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330834744|ref|YP_004409472.1| - 2.5e-08 34.3 0.0 8.3e-08 32.6 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330834744|ref|YP_004409472.1| - 1.1e-07 31.2 0.0 1.9e-07 30.4 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|330834744|ref|YP_004409472.1| - 4.5e-07 30.4 0.0 8.1e-07 29.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330834744|ref|YP_004409472.1| - 5e-07 29.7 0.0 7.5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|330834744|ref|YP_004409472.1| - 2.3e-06 27.0 0.0 3.4e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|330834744|ref|YP_004409472.1| - 4e-06 27.1 0.0 5.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330834744|ref|YP_004409472.1| - 9.3e-06 25.3 0.0 1.4e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.8 gi|330834744|ref|YP_004409472.1| - 0.00019 20.6 0.0 0.00024 20.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|330834744|ref|YP_004409472.1| - 0.00023 21.1 0.0 0.00027 20.9 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|330834744|ref|YP_004409472.1| - 0.0027 16.7 0.0 0.0043 16.1 0.0 1.3 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|330834744|ref|YP_004409472.1| - 0.0071 15.7 0.0 0.0088 15.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|330834744|ref|YP_004409472.1| - 0.052 13.1 0.1 0.083 12.5 0.0 1.4 1 1 1 2 2 2 0 Hypothetical methyltransferase 4HBT_2 PF13279.1 gi|330834745|ref|YP_004409473.1| - 4.7e-10 39.9 0.0 5.5e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|330834745|ref|YP_004409473.1| - 1e-07 31.9 0.0 1.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydrat_N PF13452.1 gi|330834745|ref|YP_004409473.1| - 0.021 14.6 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase Pyr_redox_2 PF07992.9 gi|330834746|ref|YP_004409474.1| - 2e-06 27.8 0.0 4.7e-06 26.6 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330834746|ref|YP_004409474.1| - 4.3e-05 23.8 0.0 0.05 14.0 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834746|ref|YP_004409474.1| - 5.8e-05 22.1 0.0 0.3 9.9 0.0 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330834746|ref|YP_004409474.1| - 0.004 17.1 0.1 0.011 15.7 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|330834746|ref|YP_004409474.1| - 0.05 13.6 0.0 2 8.4 0.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Glyco_hydro_15 PF00723.16 gi|330834748|ref|YP_004409476.1| - 1.4e-48 165.6 0.0 3.6e-46 157.6 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 TPR_4 PF07721.9 gi|330834748|ref|YP_004409476.1| - 3.8e-05 23.7 0.1 0.002 18.3 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330834748|ref|YP_004409476.1| - 4.4e-05 23.7 0.0 0.0016 18.7 0.0 2.4 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330834748|ref|YP_004409476.1| - 0.00028 21.2 0.1 0.0079 16.7 0.0 2.8 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330834748|ref|YP_004409476.1| - 0.0044 16.6 0.0 0.016 14.9 0.0 2.0 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330834748|ref|YP_004409476.1| - 0.0045 16.9 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330834748|ref|YP_004409476.1| - 0.0098 16.3 0.1 0.037 14.4 0.0 2.0 2 0 0 2 2 1 1 Tetratricopeptide repeat DUF608 PF04685.8 gi|330834748|ref|YP_004409476.1| - 0.015 14.0 0.1 0.026 13.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF608 GDE_C PF06202.9 gi|330834748|ref|YP_004409476.1| - 0.015 14.0 0.1 0.054 12.1 0.0 1.8 2 0 0 2 2 2 0 Amylo-alpha-1,6-glucosidase TPR_7 PF13176.1 gi|330834748|ref|YP_004409476.1| - 0.035 13.8 0.1 0.097 12.5 0.1 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Apc3 PF12895.2 gi|330834748|ref|YP_004409476.1| - 0.11 12.6 0.0 0.83 9.8 0.0 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 HpaB_N PF11794.3 gi|330834749|ref|YP_004409477.1| - 6.3e-83 278.1 0.0 1e-82 277.5 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|330834749|ref|YP_004409477.1| - 1.3e-64 216.8 0.1 1.8e-64 216.3 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Phytoreo_P8 PF07124.6 gi|330834749|ref|YP_004409477.1| - 0.064 11.8 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Phytoreovirus outer capsid protein P8 FdhD-NarQ PF02634.10 gi|330834750|ref|YP_004409478.1| - 4.3e-72 242.3 0.0 4.9e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF1641 PF07849.6 gi|330834751|ref|YP_004409479.1| - 5.3e-11 41.9 2.9 5.4e-11 41.9 0.1 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) Molybdopterin PF00384.17 gi|330834752|ref|YP_004409480.1| - 4.5e-82 276.0 0.0 5.9e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|330834752|ref|YP_004409480.1| - 3.9e-21 74.9 0.0 8e-21 73.9 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|330834752|ref|YP_004409480.1| - 1.8e-18 66.0 0.3 1.8e-18 66.0 0.2 2.6 3 0 0 3 3 3 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.1 gi|330834752|ref|YP_004409480.1| - 2.9e-12 46.2 0.2 6.3e-12 45.1 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.22 gi|330834752|ref|YP_004409480.1| - 8e-11 41.0 19.0 3.3e-06 26.4 2.2 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|330834752|ref|YP_004409480.1| - 1e-09 37.4 0.6 1e-09 37.4 0.4 2.9 3 0 0 3 3 2 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_7 PF12838.2 gi|330834752|ref|YP_004409480.1| - 2.3e-08 34.2 7.6 2.3e-08 34.2 5.3 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330834752|ref|YP_004409480.1| - 4e-08 32.9 6.3 4e-08 32.9 4.3 2.4 3 1 0 3 3 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834752|ref|YP_004409480.1| - 9.7e-08 31.5 18.9 0.00028 20.5 2.2 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834752|ref|YP_004409480.1| - 9.3e-07 28.5 11.5 9.3e-07 28.5 8.0 3.2 2 2 1 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330834752|ref|YP_004409480.1| - 4.3e-06 26.6 8.8 4.3e-06 26.6 6.1 3.0 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330834752|ref|YP_004409480.1| - 8.4e-06 25.9 11.4 8.4e-06 25.9 7.9 3.8 2 1 1 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834752|ref|YP_004409480.1| - 1.4e-05 24.7 10.9 0.00045 19.9 1.0 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330834752|ref|YP_004409480.1| - 0.00018 22.1 14.2 0.0014 19.3 1.6 3.5 3 1 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330834752|ref|YP_004409480.1| - 0.0011 19.2 16.6 0.21 11.9 2.9 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330834752|ref|YP_004409480.1| - 0.0023 18.4 5.9 0.11 13.0 1.1 2.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain TPP_enzyme_M PF00205.17 gi|330834752|ref|YP_004409480.1| - 0.0028 17.4 0.1 0.49 10.1 0.0 2.5 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Fer4_18 PF13746.1 gi|330834752|ref|YP_004409480.1| - 0.004 17.5 20.9 0.005 17.2 0.7 3.1 3 1 0 3 3 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330834752|ref|YP_004409480.1| - 0.0097 16.4 26.1 0.056 14.0 5.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330834752|ref|YP_004409480.1| - 0.15 12.4 11.3 1.8 9.0 1.2 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330834752|ref|YP_004409480.1| - 1.7 9.1 27.2 0.037 14.3 1.8 3.9 4 0 0 4 4 3 0 4Fe-4S binding domain AA_permease PF00324.16 gi|330834754|ref|YP_004409482.1| - 1e-34 119.7 51.2 1.3e-34 119.3 35.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.1 gi|330834754|ref|YP_004409482.1| - 1.8e-24 86.0 56.2 3.7e-24 85.0 39.0 1.4 1 1 0 1 1 1 1 Amino acid permease AhpC-TSA PF00578.16 gi|330834755|ref|YP_004409483.1| - 9.4e-40 135.1 0.0 1.1e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330834755|ref|YP_004409483.1| - 7.5e-25 87.1 0.0 8.4e-25 87.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|330834755|ref|YP_004409483.1| - 0.00022 21.2 0.0 0.00041 20.4 0.0 1.5 1 1 1 2 2 2 1 Thioredoxin-like SCO1-SenC PF02630.9 gi|330834755|ref|YP_004409483.1| - 0.018 14.6 0.1 2.3 7.7 0.2 2.5 1 1 1 2 2 2 0 SCO1/SenC DUF899 PF05988.7 gi|330834755|ref|YP_004409483.1| - 0.15 11.4 0.0 0.17 11.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) Cyclase PF04199.8 gi|330834756|ref|YP_004409484.1| - 5.2e-34 117.3 0.0 6.4e-34 117.1 0.0 1.1 1 0 0 1 1 1 1 Putative cyclase Glycos_transf_1 PF00534.15 gi|330834757|ref|YP_004409485.1| - 3.8e-17 62.2 0.0 7.1e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330834757|ref|YP_004409485.1| - 7.4e-13 48.8 0.0 1.7e-11 44.4 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330834757|ref|YP_004409485.1| - 0.00025 21.2 0.0 0.00092 19.4 0.0 2.0 1 0 0 1 1 1 1 Glycosyl transferases group 1 PIG-L PF02585.12 gi|330834760|ref|YP_004409488.1| - 4.1e-29 101.6 0.0 6.5e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Nse4-Nse3_bdg PF15412.1 gi|330834760|ref|YP_004409488.1| - 0.027 14.3 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE MR_MLE_C PF13378.1 gi|330834761|ref|YP_004409489.1| - 2.3e-22 79.0 0.0 3.9e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|330834761|ref|YP_004409489.1| - 6.9e-16 58.5 0.1 4.2e-15 56.0 0.0 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|330834761|ref|YP_004409489.1| - 1e-15 57.7 0.0 2e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Radical_SAM PF04055.16 gi|330834762|ref|YP_004409490.1| - 1.5e-16 61.0 0.1 2.8e-15 56.8 0.0 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|330834762|ref|YP_004409490.1| - 7e-09 35.7 0.0 2.4e-08 34.0 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|330834762|ref|YP_004409490.1| - 2.1e-08 34.3 0.1 7.4e-08 32.6 0.0 1.9 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|330834762|ref|YP_004409490.1| - 0.0013 18.9 0.1 0.0064 16.8 0.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain ADH_N PF08240.7 gi|330834763|ref|YP_004409491.1| - 6.7e-19 67.6 0.1 1.2e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330834763|ref|YP_004409491.1| - 0.00047 19.6 0.0 0.0014 18.1 0.0 1.8 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.14 gi|330834763|ref|YP_004409491.1| - 0.0011 18.1 0.0 0.0017 17.5 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|330834763|ref|YP_004409491.1| - 0.0025 17.7 0.2 0.0062 16.4 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.11 gi|330834763|ref|YP_004409491.1| - 0.051 13.0 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|330834763|ref|YP_004409491.1| - 0.14 11.4 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_3 PF01494.14 gi|330834763|ref|YP_004409491.1| - 0.2 10.7 0.0 0.3 10.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Glucos_trans_II PF14264.1 gi|330834764|ref|YP_004409492.1| - 0.12 11.3 4.3 0.14 11.1 3.0 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF805 PF05656.9 gi|330834764|ref|YP_004409492.1| - 2.9 7.7 5.2 3.4 7.5 3.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Peptidase_S9 PF00326.16 gi|330834765|ref|YP_004409493.1| - 4.7e-43 146.8 0.0 6.7e-43 146.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|330834765|ref|YP_004409493.1| - 0.00013 21.7 0.0 0.00022 21.0 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330834765|ref|YP_004409493.1| - 0.00094 19.1 0.0 0.0078 16.1 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family CppA_C PF14507.1 gi|330834766|ref|YP_004409494.1| - 0.12 12.6 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 CppA C-terminal COXG PF06240.8 gi|330834767|ref|YP_004409495.1| - 0.0063 16.1 0.0 0.0073 15.9 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Vps35 PF03635.12 gi|330834769|ref|YP_004409497.1| - 0.015 13.4 0.0 0.016 13.3 0.0 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 Glycos_transf_2 PF00535.21 gi|330834770|ref|YP_004409498.1| - 4.1e-21 75.4 0.0 6.8e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834770|ref|YP_004409498.1| - 6.2e-05 22.9 0.0 0.00019 21.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330834770|ref|YP_004409498.1| - 8.8e-05 21.7 0.0 0.00015 20.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Tmemb_9 PF05434.6 gi|330834770|ref|YP_004409498.1| - 0.048 13.4 0.5 0.074 12.8 0.3 1.2 1 0 0 1 1 1 0 TMEM9 Glycos_transf_1 PF00534.15 gi|330834771|ref|YP_004409499.1| - 5.5e-14 51.9 0.0 9.7e-14 51.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330834771|ref|YP_004409499.1| - 1.6e-10 41.2 0.0 2.6e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330834771|ref|YP_004409499.1| - 1.4e-08 34.8 0.0 6.6e-08 32.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_18 PF15024.1 gi|330834771|ref|YP_004409499.1| - 0.017 13.4 0.0 0.024 13.0 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 18 Glyco_transf_4 PF13439.1 gi|330834771|ref|YP_004409499.1| - 0.077 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase Family 4 UreE_C PF05194.7 gi|330834773|ref|YP_004409501.1| - 0.0001 22.3 0.0 0.00014 21.9 0.0 1.2 1 0 0 1 1 1 1 UreE urease accessory protein, C-terminal domain DoxA PF07680.6 gi|330834773|ref|YP_004409501.1| - 0.11 12.1 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 TQO small subunit DoxA UreD PF01774.12 gi|330834774|ref|YP_004409502.1| - 3e-09 36.6 0.0 3.7e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.14 gi|330834775|ref|YP_004409503.1| - 8.9e-33 113.2 0.0 1.1e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|330834775|ref|YP_004409503.1| - 5.7e-10 38.4 0.1 1.1e-09 37.5 0.1 1.4 1 1 0 1 1 1 1 ArgK protein CbiA PF01656.18 gi|330834775|ref|YP_004409503.1| - 3.3e-06 26.6 0.2 5.9e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|330834775|ref|YP_004409503.1| - 7.6e-06 25.6 0.1 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.22 gi|330834775|ref|YP_004409503.1| - 6.3e-05 22.4 0.2 0.14 11.6 0.0 2.2 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain NTPase_1 PF03266.10 gi|330834775|ref|YP_004409503.1| - 0.00038 20.1 0.1 0.00057 19.6 0.1 1.3 1 0 0 1 1 1 1 NTPase LpxK PF02606.9 gi|330834775|ref|YP_004409503.1| - 0.00069 18.6 0.2 0.00094 18.2 0.1 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.17 gi|330834775|ref|YP_004409503.1| - 0.00077 18.9 0.0 0.0014 18.1 0.0 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.12 gi|330834775|ref|YP_004409503.1| - 0.0012 18.4 0.2 0.0041 16.7 0.1 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|330834775|ref|YP_004409503.1| - 0.0014 18.0 0.0 0.0019 17.6 0.0 1.3 1 0 0 1 1 1 1 AAA-like domain AAA_18 PF13238.1 gi|330834775|ref|YP_004409503.1| - 0.0032 17.7 0.4 0.006 16.8 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330834775|ref|YP_004409503.1| - 0.0088 16.8 0.5 0.015 16.1 0.4 1.6 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|330834775|ref|YP_004409503.1| - 0.0089 15.5 0.2 2.7 7.4 0.1 2.9 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|330834775|ref|YP_004409503.1| - 0.012 15.3 0.1 0.026 14.2 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain MMR_HSR1 PF01926.18 gi|330834775|ref|YP_004409503.1| - 0.027 14.4 0.7 0.071 13.0 0.5 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|330834775|ref|YP_004409503.1| - 0.029 14.8 0.3 0.12 12.9 0.2 2.0 2 0 0 2 2 2 0 Miro-like protein APS_kinase PF01583.15 gi|330834775|ref|YP_004409503.1| - 0.095 12.3 0.1 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_24 PF13479.1 gi|330834775|ref|YP_004409503.1| - 0.12 11.9 0.2 0.4 10.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330834775|ref|YP_004409503.1| - 0.13 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF3419 PF11899.3 gi|330834775|ref|YP_004409503.1| - 0.15 10.7 0.0 0.23 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) UreF PF01730.11 gi|330834776|ref|YP_004409504.1| - 3.7e-18 66.0 0.0 5e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 UreF Amidohydro_1 PF01979.15 gi|330834778|ref|YP_004409506.1| - 1e-51 176.6 2.6 1.3e-51 176.2 1.8 1.1 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.15 gi|330834778|ref|YP_004409506.1| - 4.1e-45 152.8 1.2 7.6e-45 151.9 0.9 1.5 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_5 PF13594.1 gi|330834778|ref|YP_004409506.1| - 1.5e-10 40.7 0.9 5.9e-10 38.8 0.6 2.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|330834778|ref|YP_004409506.1| - 1.2e-06 28.8 0.4 0.00017 21.7 0.1 2.8 2 1 1 3 3 3 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|330834778|ref|YP_004409506.1| - 3.3e-06 26.5 5.3 0.00022 20.5 0.4 2.5 1 1 1 2 2 2 2 Amidohydrolase family Urease_gamma PF00547.13 gi|330834779|ref|YP_004409507.1| - 3.8e-40 135.8 0.1 7.4e-40 134.9 0.1 1.5 1 0 0 1 1 1 1 Urease, gamma subunit Urease_beta PF00699.15 gi|330834779|ref|YP_004409507.1| - 2.2e-38 130.1 0.4 4.1e-38 129.2 0.1 1.7 2 0 0 2 2 2 1 Urease beta subunit CN_hydrolase PF00795.17 gi|330834781|ref|YP_004409509.1| - 0.0032 16.8 0.0 0.0032 16.8 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Glycos_transf_2 PF00535.21 gi|330834782|ref|YP_004409510.1| - 1.8e-05 24.4 0.4 3e-05 23.7 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834782|ref|YP_004409510.1| - 0.0018 18.1 0.0 0.0023 17.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 dTDP_sugar_isom PF00908.12 gi|330834783|ref|YP_004409511.1| - 2.7e-59 199.4 0.0 3.1e-59 199.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase ARD PF03079.9 gi|330834783|ref|YP_004409511.1| - 0.0059 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family Cupin_8 PF13621.1 gi|330834783|ref|YP_004409511.1| - 0.042 13.3 0.1 0.075 12.5 0.0 1.4 2 0 0 2 2 2 0 Cupin-like domain Cupin_1 PF00190.17 gi|330834783|ref|YP_004409511.1| - 0.15 11.4 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Cupin RmlD_sub_bind PF04321.12 gi|330834784|ref|YP_004409512.1| - 2.6e-70 236.5 0.0 3.4e-70 236.1 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|330834784|ref|YP_004409512.1| - 2.8e-21 76.0 0.0 4.1e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|330834784|ref|YP_004409512.1| - 8e-10 38.0 2.9 4.2e-08 32.4 2.0 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|330834784|ref|YP_004409512.1| - 1.4e-08 34.0 0.7 1.2e-07 30.9 0.0 2.2 1 1 0 2 2 2 1 Male sterility protein 3Beta_HSD PF01073.14 gi|330834784|ref|YP_004409512.1| - 2.1e-06 26.6 1.3 8.3e-06 24.7 0.9 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|330834784|ref|YP_004409512.1| - 0.00047 20.1 0.0 0.00062 19.8 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding DUF2913 PF11140.3 gi|330834784|ref|YP_004409512.1| - 0.047 12.9 0.7 0.11 11.8 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2913) NTP_transferase PF00483.18 gi|330834785|ref|YP_004409513.1| - 1.1e-48 165.7 0.0 1.4e-48 165.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|330834785|ref|YP_004409513.1| - 3.5e-10 38.9 17.8 1.4e-07 30.6 0.6 4.2 5 0 0 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|330834785|ref|YP_004409513.1| - 9.8e-10 37.8 0.4 9.8e-10 37.8 0.3 3.4 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|330834785|ref|YP_004409513.1| - 3.5e-09 36.9 0.0 4.7e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Arch_ATPase PF01637.13 gi|330834785|ref|YP_004409513.1| - 0.081 12.6 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Epimerase PF01370.16 gi|330834786|ref|YP_004409514.1| - 5.4e-64 215.8 0.0 6.5e-64 215.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|330834786|ref|YP_004409514.1| - 2e-27 95.8 0.0 2.4e-27 95.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|330834786|ref|YP_004409514.1| - 4.2e-20 71.5 0.0 6.3e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|330834786|ref|YP_004409514.1| - 5e-16 58.3 0.1 4.7e-14 51.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|330834786|ref|YP_004409514.1| - 3.9e-12 45.6 1.7 1.3e-10 40.6 1.2 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|330834786|ref|YP_004409514.1| - 7.5e-10 39.1 0.0 1e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|330834786|ref|YP_004409514.1| - 1e-05 24.8 0.8 0.0003 20.1 0.5 2.5 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|330834786|ref|YP_004409514.1| - 0.0012 18.7 0.4 0.0048 16.8 0.0 2.0 2 1 0 2 2 2 1 short chain dehydrogenase Glycos_transf_2 PF00535.21 gi|330834787|ref|YP_004409515.1| - 2.7e-05 23.9 0.1 6e-05 22.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834787|ref|YP_004409515.1| - 0.027 14.2 0.0 0.085 12.6 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|330834788|ref|YP_004409516.1| - 3.7e-33 114.5 1.4 5.2e-33 114.1 1.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834788|ref|YP_004409516.1| - 3.8e-19 69.4 0.0 5.5e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|330834788|ref|YP_004409516.1| - 8e-14 51.3 0.4 9.8e-14 51.0 0.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|330834788|ref|YP_004409516.1| - 7.2e-06 26.2 0.1 1.5e-05 25.1 0.1 1.6 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.1 gi|330834788|ref|YP_004409516.1| - 0.00018 20.7 0.3 0.00047 19.4 0.1 1.7 1 1 1 2 2 2 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.1 gi|330834788|ref|YP_004409516.1| - 0.00027 20.7 0.0 0.00043 20.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_64 PF09258.5 gi|330834788|ref|YP_004409516.1| - 0.036 13.2 0.1 0.055 12.6 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain Glyco_transf_21 PF13506.1 gi|330834788|ref|YP_004409516.1| - 0.04 13.2 0.0 0.11 11.7 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glyco_trans_1_4 PF13692.1 gi|330834789|ref|YP_004409517.1| - 1.2e-13 51.3 0.0 1.8e-13 50.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|330834789|ref|YP_004409517.1| - 4.1e-10 39.3 0.0 1.3e-09 37.7 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330834789|ref|YP_004409517.1| - 0.002 18.3 0.0 0.0066 16.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Polysacc_synt PF01943.12 gi|330834793|ref|YP_004409521.1| - 1.4e-13 50.7 68.1 1.1e-12 47.7 25.4 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|330834793|ref|YP_004409521.1| - 4.8e-09 36.0 24.8 4.8e-09 36.0 17.2 2.3 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|330834793|ref|YP_004409521.1| - 1.7e-05 24.6 14.7 1.7e-05 24.6 10.2 3.9 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_21 PF05050.7 gi|330834794|ref|YP_004409522.1| - 4.8e-18 65.6 0.1 6.8e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|330834794|ref|YP_004409522.1| - 8.9e-08 32.6 0.0 1.5e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_22 PF13383.1 gi|330834794|ref|YP_004409522.1| - 0.00062 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|330834794|ref|YP_004409522.1| - 0.0046 16.5 0.6 0.013 15.0 0.0 1.9 2 0 0 2 2 2 1 Met-10+ like-protein PrmA PF06325.8 gi|330834794|ref|YP_004409522.1| - 0.0089 15.1 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.5 gi|330834794|ref|YP_004409522.1| - 0.042 13.3 0.2 0.54 9.7 0.0 2.3 2 1 0 2 2 2 0 RNA cap guanine-N2 methyltransferase ProRS-C_2 PF09181.5 gi|330834794|ref|YP_004409522.1| - 0.14 12.1 4.1 2.2 8.2 0.0 3.3 3 0 0 3 3 3 0 Prolyl-tRNA synthetase, C-terminal Glycos_transf_2 PF00535.21 gi|330834795|ref|YP_004409523.1| - 1.3e-13 50.9 3.5 1.3e-13 50.9 2.4 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834795|ref|YP_004409523.1| - 1.2e-05 25.1 0.0 1.9e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 RTX_C PF08339.5 gi|330834795|ref|YP_004409523.1| - 1.1 8.9 4.7 0.22 11.2 0.7 1.8 2 0 0 2 2 2 0 RTX C-terminal domain HSDR_N_2 PF13588.1 gi|330834798|ref|YP_004409526.1| - 2.6e-05 23.9 0.5 7.7e-05 22.4 0.1 2.0 2 0 0 2 2 2 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|330834798|ref|YP_004409526.1| - 0.0011 18.7 2.0 0.48 10.1 0.0 3.3 3 1 1 4 4 4 2 Type I restriction enzyme R protein N terminus (HSDR_N) TPR_11 PF13414.1 gi|330834799|ref|YP_004409527.1| - 5.3e-59 195.7 55.9 2.3e-14 52.7 4.2 8.3 3 2 5 10 10 10 9 TPR repeat TPR_16 PF13432.1 gi|330834799|ref|YP_004409527.1| - 5.4e-50 167.1 20.8 3.2e-09 37.2 0.2 6.7 4 1 2 7 7 7 7 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330834799|ref|YP_004409527.1| - 1.5e-49 161.9 63.3 7e-07 28.6 0.2 11.5 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330834799|ref|YP_004409527.1| - 1.8e-41 136.9 47.9 3.1e-05 23.8 0.5 12.0 12 0 0 12 12 12 10 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330834799|ref|YP_004409527.1| - 5.8e-39 130.1 68.5 7.1e-06 25.4 0.9 12.1 11 1 1 12 12 12 9 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330834799|ref|YP_004409527.1| - 3.6e-35 120.1 22.8 7.5e-07 29.3 0.0 7.3 2 1 4 8 8 8 7 Tetratricopeptide repeat Apc3 PF12895.2 gi|330834799|ref|YP_004409527.1| - 1.7e-33 114.5 30.2 1e-07 32.0 2.2 7.1 1 1 6 7 7 7 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.1 gi|330834799|ref|YP_004409527.1| - 5.6e-32 107.3 3.8 4.2e-05 23.8 0.0 10.4 2 2 8 10 10 10 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330834799|ref|YP_004409527.1| - 3.6e-25 85.8 68.4 1.6e-05 24.3 0.8 11.5 6 2 5 11 11 11 9 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330834799|ref|YP_004409527.1| - 4.7e-25 87.2 1.2 9.6e-06 25.3 0.0 7.1 3 2 5 8 8 8 7 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330834799|ref|YP_004409527.1| - 8.1e-21 73.7 40.6 3.2e-06 26.9 0.3 8.5 1 1 7 8 8 8 7 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330834799|ref|YP_004409527.1| - 1.4e-18 66.7 2.3 0.047 13.8 0.0 7.2 4 3 4 8 8 8 5 Tetratricopeptide repeat NARP1 PF12569.3 gi|330834799|ref|YP_004409527.1| - 1.3e-14 53.8 20.4 0.0028 16.4 0.1 6.0 1 1 5 6 6 6 6 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|330834799|ref|YP_004409527.1| - 6e-10 38.9 29.6 0.32 11.5 0.0 9.5 10 0 0 10 10 8 3 Tetratricopeptide repeat TPR_15 PF13429.1 gi|330834799|ref|YP_004409527.1| - 4.1e-08 32.6 9.9 0.003 16.6 0.4 4.5 2 2 1 3 3 3 3 Tetratricopeptide repeat BTAD PF03704.12 gi|330834799|ref|YP_004409527.1| - 2.1e-07 31.3 1.4 8.4 6.6 0.0 6.5 3 2 6 9 9 9 0 Bacterial transcriptional activator domain Syntaxin-6_N PF09177.6 gi|330834799|ref|YP_004409527.1| - 6.7e-07 29.6 5.3 0.0084 16.4 0.1 6.0 1 1 4 6 6 6 2 Syntaxin 6, N-terminal HSDR_N_2 PF13588.1 gi|330834799|ref|YP_004409527.1| - 1.5e-06 27.9 0.2 4e-06 26.5 0.1 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.9 gi|330834799|ref|YP_004409527.1| - 1e-05 25.3 10.1 0.00042 20.1 0.4 3.9 3 2 1 4 4 4 2 Type I restriction enzyme R protein N terminus (HSDR_N) DUF3209 PF11483.3 gi|330834799|ref|YP_004409527.1| - 1.1e-05 25.7 11.3 4.5 7.6 0.2 5.8 3 2 1 5 5 5 1 Protein of unknown function (DUF3209) TPR_21 PF09976.4 gi|330834799|ref|YP_004409527.1| - 0.0002 21.2 7.5 0.17 11.8 0.0 5.1 3 1 0 4 4 4 1 Tetratricopeptide repeat MIT PF04212.13 gi|330834799|ref|YP_004409527.1| - 0.00034 20.4 16.2 5.5 6.9 0.5 8.1 7 2 2 9 9 9 0 MIT (microtubule interacting and transport) domain Alkyl_sulf_dimr PF14863.1 gi|330834799|ref|YP_004409527.1| - 0.0075 16.4 5.1 2.8 8.1 0.0 5.0 3 2 1 5 5 5 1 Alkyl sulfatase dimerisation Rapsyn_N PF10579.4 gi|330834799|ref|YP_004409527.1| - 0.022 14.5 0.4 0.48 10.2 0.0 3.4 3 1 1 4 4 4 0 Rapsyn N-terminal myristoylation and linker region Phage_integrase PF00589.17 gi|330834799|ref|YP_004409527.1| - 0.022 14.4 0.1 0.24 11.0 0.0 2.3 2 0 0 2 2 2 0 Phage integrase family SHNi-TPR PF10516.4 gi|330834799|ref|YP_004409527.1| - 0.053 12.7 1.8 24 4.3 0.1 4.8 5 0 0 5 5 4 0 SHNi-TPR DUF3856 PF12968.2 gi|330834799|ref|YP_004409527.1| - 0.099 12.4 9.8 20 5.0 0.2 7.0 5 2 2 7 7 6 0 Domain of Unknown Function (DUF3856) SPO22 PF08631.5 gi|330834799|ref|YP_004409527.1| - 0.44 9.5 11.1 0.19 10.7 0.6 4.2 4 2 0 4 4 4 0 Meiosis protein SPO22/ZIP4 like TPR_3 PF07720.7 gi|330834799|ref|YP_004409527.1| - 1.9 8.3 22.2 0.38 10.6 0.8 6.3 6 0 0 6 6 5 0 Tetratricopeptide repeat YvrJ PF12841.2 gi|330834799|ref|YP_004409527.1| - 6.9 6.0 7.3 63 2.9 0.0 4.6 5 0 0 5 5 5 0 YvrJ protein family Gin PF10764.4 gi|330834799|ref|YP_004409527.1| - 7.1 6.4 13.1 53 3.6 0.1 6.4 7 0 0 7 7 6 0 Inhibitor of sigma-G Gin Glycos_transf_2 PF00535.21 gi|330834801|ref|YP_004409529.1| - 3.9e-07 29.8 0.7 7.6e-07 28.9 0.5 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330834801|ref|YP_004409529.1| - 1.5e-05 24.9 0.0 2e-05 24.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Aldedh PF00171.17 gi|330834804|ref|YP_004409532.1| - 1e-110 370.2 0.0 1.2e-110 370.0 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|330834804|ref|YP_004409532.1| - 0.00053 18.8 0.0 0.00083 18.1 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Phosphodiest PF01663.17 gi|330834805|ref|YP_004409533.1| - 2e-22 80.0 0.6 1.2e-12 47.8 0.1 2.7 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|330834805|ref|YP_004409533.1| - 2.4e-06 27.3 0.0 0.00066 19.3 0.0 2.4 2 0 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|330834805|ref|YP_004409533.1| - 0.00019 20.9 0.0 0.003 16.9 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily Alk_phosphatase PF00245.15 gi|330834805|ref|YP_004409533.1| - 0.1 11.2 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 Alkaline phosphatase Sugar_tr PF00083.19 gi|330834806|ref|YP_004409534.1| - 1.1e-39 136.2 29.3 4.8e-38 130.9 20.3 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330834806|ref|YP_004409534.1| - 5.4e-24 84.5 53.5 1.5e-21 76.5 22.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Glycos_transf_2 PF00535.21 gi|330834807|ref|YP_004409535.1| - 3.6e-07 30.0 0.0 5.1e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 PfkB PF00294.19 gi|330834809|ref|YP_004409537.1| - 8.7e-39 133.4 0.0 9.9e-39 133.2 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.17 gi|330834810|ref|YP_004409538.1| - 1.8e-38 131.7 0.0 2.2e-38 131.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ABC1 PF03109.11 gi|330834811|ref|YP_004409539.1| - 8.1e-25 87.1 0.0 1.8e-24 86.0 0.0 1.5 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.17 gi|330834811|ref|YP_004409539.1| - 3.1e-07 29.9 0.2 3.8e-05 23.1 0.0 3.0 3 0 0 3 3 3 1 RIO1 family APH PF01636.18 gi|330834811|ref|YP_004409539.1| - 0.0018 18.0 0.1 0.011 15.4 0.0 2.2 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|330834811|ref|YP_004409539.1| - 0.0034 16.5 0.0 0.0067 15.6 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Flg_hook PF02120.11 gi|330834811|ref|YP_004409539.1| - 0.094 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK YqzE PF14038.1 gi|330834811|ref|YP_004409539.1| - 9.6 6.0 7.6 0.49 10.1 0.9 2.0 2 0 0 2 2 2 0 YqzE-like protein HSP20 PF00011.16 gi|330834812|ref|YP_004409540.1| - 3.3e-12 46.1 0.0 4.2e-12 45.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family MFS_1 PF07690.11 gi|330834813|ref|YP_004409541.1| - 4.5e-10 38.7 45.2 2.2e-09 36.4 9.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330834813|ref|YP_004409541.1| - 9.9e-07 27.6 10.1 9.9e-07 27.6 7.0 2.5 2 0 0 2 2 2 2 Sugar (and other) transporter SGL PF08450.7 gi|330834814|ref|YP_004409542.1| - 1.1e-57 195.2 0.0 1.3e-57 195.0 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Reg_prop PF07494.6 gi|330834814|ref|YP_004409542.1| - 0.0023 17.7 0.1 5.6 7.3 0.0 3.0 2 0 0 2 2 2 2 Two component regulator propeller AMP-binding PF00501.23 gi|330834815|ref|YP_004409543.1| - 9.4e-71 238.3 0.0 1.4e-70 237.8 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330834815|ref|YP_004409543.1| - 2e-14 54.2 0.2 1.5e-13 51.4 0.2 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF35_N PF12172.3 gi|330834816|ref|YP_004409544.1| - 3.3e-05 23.6 0.7 5.2e-05 23.0 0.5 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_S27e PF01667.12 gi|330834816|ref|YP_004409544.1| - 0.057 12.9 2.5 2.6 7.6 0.9 2.2 2 0 0 2 2 2 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|330834816|ref|YP_004409544.1| - 0.24 10.9 3.9 2.4 7.7 0.2 2.5 2 0 0 2 2 2 0 A2L zinc ribbon domain ADK_lid PF05191.9 gi|330834816|ref|YP_004409544.1| - 8.2 6.1 6.6 90 2.8 4.6 2.2 1 1 0 1 1 1 0 Adenylate kinase, active site lid ACP_syn_III PF08545.5 gi|330834817|ref|YP_004409545.1| - 6.9e-07 28.8 0.8 0.00037 20.0 0.1 3.1 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|330834817|ref|YP_004409545.1| - 1.5e-05 24.1 0.1 0.00015 20.8 0.0 2.2 2 0 0 2 2 2 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|330834817|ref|YP_004409545.1| - 0.0024 17.3 0.2 0.0048 16.3 0.2 1.6 1 0 0 1 1 1 1 Thiolase, C-terminal domain SBP_bac_1 PF01547.20 gi|330834818|ref|YP_004409546.1| - 2.4e-24 86.6 0.1 3.5e-24 86.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|330834818|ref|YP_004409546.1| - 2.5e-18 66.8 0.0 4e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|330834818|ref|YP_004409546.1| - 0.00015 21.4 0.0 0.58 9.7 0.0 2.6 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|330834818|ref|YP_004409546.1| - 0.0021 17.4 0.0 0.029 13.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|330834819|ref|YP_004409547.1| - 3.9e-15 55.8 18.2 3.9e-15 55.8 12.6 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|330834820|ref|YP_004409548.1| - 3.7e-18 65.6 19.4 3.7e-18 65.6 13.5 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|330834821|ref|YP_004409549.1| - 1.9e-33 115.6 0.0 3e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834821|ref|YP_004409549.1| - 8.3e-07 29.2 0.0 0.00046 20.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330834821|ref|YP_004409549.1| - 0.00085 18.6 0.1 0.0067 15.6 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|330834821|ref|YP_004409549.1| - 0.0013 18.7 0.0 0.0059 16.6 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|330834821|ref|YP_004409549.1| - 0.0047 16.1 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|330834821|ref|YP_004409549.1| - 0.011 15.2 0.0 0.094 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain TOBE_2 PF08402.5 gi|330834821|ref|YP_004409549.1| - 0.011 15.6 0.0 0.031 14.2 0.0 1.8 1 0 0 1 1 1 0 TOBE domain S1 PF00575.18 gi|330834821|ref|YP_004409549.1| - 0.012 15.6 1.8 1.1 9.4 0.0 3.2 3 0 0 3 3 3 0 S1 RNA binding domain AAA_15 PF13175.1 gi|330834821|ref|YP_004409549.1| - 0.013 14.6 0.1 0.83 8.6 0.0 2.4 3 0 0 3 3 3 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|330834821|ref|YP_004409549.1| - 0.045 13.4 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|330834821|ref|YP_004409549.1| - 0.048 13.4 0.0 0.11 12.2 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|330834821|ref|YP_004409549.1| - 0.06 13.6 0.2 0.17 12.1 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|330834821|ref|YP_004409549.1| - 0.067 12.7 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|330834821|ref|YP_004409549.1| - 0.15 11.6 0.1 0.3 10.7 0.0 1.5 1 1 0 1 1 1 0 NACHT domain DLH PF01738.13 gi|330834822|ref|YP_004409550.1| - 9.8e-55 185.1 0.0 1.7e-54 184.4 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|330834822|ref|YP_004409550.1| - 1.6e-08 34.4 0.0 2.6e-08 33.7 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330834822|ref|YP_004409550.1| - 4.7e-06 26.6 0.0 0.047 13.5 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|330834822|ref|YP_004409550.1| - 0.013 15.2 0.7 0.12 12.0 0.0 2.3 1 1 2 3 3 3 0 BAAT / Acyl-CoA thioester hydrolase C terminal TrmB PF01978.14 gi|330834822|ref|YP_004409550.1| - 0.1 12.3 0.1 0.27 10.9 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_S9 PF00326.16 gi|330834822|ref|YP_004409550.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.4 2 0 0 2 2 2 0 Prolyl oligopeptidase family Radical_SAM PF04055.16 gi|330834823|ref|YP_004409551.1| - 5.7e-21 75.4 0.0 1.5e-19 70.7 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|330834823|ref|YP_004409551.1| - 0.0098 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain 2-Hacid_dh_C PF02826.14 gi|330834826|ref|YP_004409554.1| - 1.4e-33 115.5 0.0 1.9e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|330834826|ref|YP_004409554.1| - 1.7e-15 56.6 0.0 2e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Shikimate_DH PF01488.15 gi|330834826|ref|YP_004409554.1| - 0.0012 18.9 0.0 0.0042 17.1 0.0 2.0 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|330834826|ref|YP_004409554.1| - 0.0029 17.4 0.0 0.0056 16.5 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|330834826|ref|YP_004409554.1| - 0.0087 15.9 0.0 0.025 14.4 0.0 1.6 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.12 gi|330834826|ref|YP_004409554.1| - 0.014 15.7 0.0 0.045 14.1 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF1163 PF06651.6 gi|330834826|ref|YP_004409554.1| - 0.037 13.5 0.1 0.079 12.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1163) ThiF PF00899.16 gi|330834826|ref|YP_004409554.1| - 0.11 12.3 0.7 1.7 8.4 0.4 2.3 1 1 1 2 2 2 0 ThiF family HD_3 PF13023.1 gi|330834826|ref|YP_004409554.1| - 0.11 12.2 0.1 17 5.0 0.0 2.5 2 0 0 2 2 2 0 HD domain Asp_Glu_race PF01177.17 gi|330834828|ref|YP_004409556.1| - 1.1e-13 51.6 0.0 1.3e-13 51.3 0.0 1.1 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase MFS_1 PF07690.11 gi|330834830|ref|YP_004409558.1| - 2.1e-37 128.6 51.6 2.1e-37 128.6 35.8 3.4 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330834830|ref|YP_004409558.1| - 9.2e-06 24.4 9.3 9.2e-06 24.4 6.5 3.5 3 1 1 4 4 4 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|330834830|ref|YP_004409558.1| - 0.00022 19.4 3.0 0.00022 19.4 2.1 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector GWT1 PF06423.7 gi|330834830|ref|YP_004409558.1| - 0.00096 19.2 3.1 0.029 14.4 0.5 2.6 2 0 0 2 2 2 1 GWT1 DUF2583 PF10762.4 gi|330834830|ref|YP_004409558.1| - 0.045 13.9 4.0 0.26 11.4 0.1 3.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) MarR_2 PF12802.2 gi|330834831|ref|YP_004409559.1| - 4e-12 45.6 0.0 7.5e-12 44.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330834831|ref|YP_004409559.1| - 5.9e-11 41.8 0.8 1.7e-10 40.4 0.1 2.2 2 1 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|330834831|ref|YP_004409559.1| - 2.4e-10 40.5 0.9 7.6e-09 35.7 0.0 2.5 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|330834831|ref|YP_004409559.1| - 1.6e-05 24.8 0.1 3.8e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330834831|ref|YP_004409559.1| - 0.00051 19.3 0.1 0.0023 17.2 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|330834831|ref|YP_004409559.1| - 0.0024 17.9 1.6 0.011 15.8 0.9 2.1 2 1 0 2 2 2 1 Penicillinase repressor TrmB PF01978.14 gi|330834831|ref|YP_004409559.1| - 0.0049 16.5 1.2 0.013 15.1 0.1 2.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|330834831|ref|YP_004409559.1| - 0.028 14.0 0.1 0.048 13.2 0.1 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Ssu72 PF04722.8 gi|330834831|ref|YP_004409559.1| - 0.041 13.1 2.4 1.1 8.5 1.2 2.0 1 1 1 2 2 2 0 Ssu72-like protein DUF4194 PF13835.1 gi|330834831|ref|YP_004409559.1| - 0.042 13.2 1.4 0.18 11.2 0.2 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4194) DUF4423 PF14394.1 gi|330834831|ref|YP_004409559.1| - 0.042 13.3 0.3 0.069 12.6 0.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF4250 PF14056.1 gi|330834831|ref|YP_004409559.1| - 0.046 13.4 0.8 1.3 8.8 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) Peptidase_A25 PF03418.9 gi|330834831|ref|YP_004409559.1| - 0.067 11.9 1.3 0.094 11.4 0.9 1.2 1 0 0 1 1 1 0 Germination protease GntR PF00392.16 gi|330834831|ref|YP_004409559.1| - 0.069 12.6 0.4 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|330834831|ref|YP_004409559.1| - 0.092 12.5 0.1 0.27 11.0 0.1 1.9 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family IF3_N PF05198.11 gi|330834831|ref|YP_004409559.1| - 0.095 12.6 0.4 0.19 11.6 0.2 1.6 1 1 0 1 1 1 0 Translation initiation factor IF-3, N-terminal domain DUF2250 PF10007.4 gi|330834831|ref|YP_004409559.1| - 0.17 11.8 2.0 0.65 9.9 0.1 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Glyco_hydro_15 PF00723.16 gi|330834832|ref|YP_004409560.1| - 4.1e-18 65.1 0.0 2.6e-12 46.0 0.1 3.9 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 DUF608 PF04685.8 gi|330834832|ref|YP_004409560.1| - 1.5e-07 30.4 0.2 3.6e-07 29.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF608 MBOAT_2 PF13813.1 gi|330834832|ref|YP_004409560.1| - 0.043 13.8 0.4 0.1 12.6 0.3 1.6 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family Prenyltrans_1 PF13243.1 gi|330834832|ref|YP_004409560.1| - 0.076 13.0 0.1 0.39 10.7 0.0 2.3 3 0 0 3 3 3 0 Prenyltransferase-like Fer4_9 PF13187.1 gi|330834834|ref|YP_004409562.1| - 7.7e-06 26.0 12.2 0.00038 20.6 8.2 2.6 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330834834|ref|YP_004409562.1| - 0.00034 20.4 6.2 0.00057 19.7 4.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330834834|ref|YP_004409562.1| - 0.00086 19.6 11.3 0.011 16.1 0.5 2.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330834834|ref|YP_004409562.1| - 0.0028 17.1 2.1 0.0028 17.1 1.5 2.7 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330834834|ref|YP_004409562.1| - 0.0044 16.8 3.0 0.0044 16.8 2.1 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834834|ref|YP_004409562.1| - 0.011 15.5 13.6 0.028 14.1 2.0 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|330834834|ref|YP_004409562.1| - 0.011 15.3 10.3 0.19 11.3 1.8 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|330834834|ref|YP_004409562.1| - 0.012 15.8 15.2 0.033 14.5 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330834834|ref|YP_004409562.1| - 0.023 15.4 9.1 0.04 14.6 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330834834|ref|YP_004409562.1| - 0.029 14.7 9.8 0.29 11.5 0.7 2.8 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330834834|ref|YP_004409562.1| - 0.29 11.5 12.0 0.26 11.7 1.6 2.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330834834|ref|YP_004409562.1| - 0.51 10.4 16.5 2.4 8.2 9.9 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330834834|ref|YP_004409562.1| - 1.2 9.0 13.7 10 6.0 9.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330834834|ref|YP_004409562.1| - 1.2 9.2 19.1 0.11 12.4 2.0 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Phtf-FEM1B_bdg PF12129.3 gi|330834834|ref|YP_004409562.1| - 6.9 6.0 10.4 0.58 9.5 1.8 2.3 1 1 1 2 2 2 0 Male germ-cell putative homeodomain transcription factor Reo_sigmaC PF04582.7 gi|330834835|ref|YP_004409563.1| - 4.1e-06 26.1 6.7 1.2e-05 24.7 3.6 1.9 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Fib_alpha PF08702.5 gi|330834835|ref|YP_004409563.1| - 6.6e-06 26.3 30.7 0.0011 19.0 12.4 3.6 2 1 3 5 5 4 3 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|330834835|ref|YP_004409563.1| - 9.9e-06 25.2 30.6 0.0033 17.0 12.8 2.4 1 1 1 2 2 2 2 IncA protein Spc7 PF08317.6 gi|330834835|ref|YP_004409563.1| - 4.1e-05 22.3 34.3 8.2e-05 21.4 12.6 2.8 1 1 2 3 3 3 1 Spc7 kinetochore protein TMF_DNA_bd PF12329.3 gi|330834835|ref|YP_004409563.1| - 0.00011 21.9 36.0 0.0014 18.3 8.1 4.6 2 1 3 5 5 5 3 TATA element modulatory factor 1 DNA binding AAA_13 PF13166.1 gi|330834835|ref|YP_004409563.1| - 0.00019 20.0 33.9 0.0029 16.1 18.1 1.9 1 1 1 2 2 2 2 AAA domain KAR9 PF08580.5 gi|330834835|ref|YP_004409563.1| - 0.00034 19.0 16.5 0.014 13.7 6.2 2.4 1 1 1 2 2 2 2 Yeast cortical protein KAR9 DUF883 PF05957.8 gi|330834835|ref|YP_004409563.1| - 0.00037 20.8 12.6 0.017 15.5 0.2 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF883) Corona_S2 PF01601.11 gi|330834835|ref|YP_004409563.1| - 0.00041 18.6 13.3 0.0036 15.4 0.7 2.4 1 1 1 2 2 2 1 Coronavirus S2 glycoprotein Atg14 PF10186.4 gi|330834835|ref|YP_004409563.1| - 0.002 17.1 27.7 0.0028 16.6 17.9 2.0 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 Laminin_I PF06008.9 gi|330834835|ref|YP_004409563.1| - 0.0057 16.0 24.4 0.17 11.1 11.1 2.4 1 1 1 2 2 2 2 Laminin Domain I DUF3584 PF12128.3 gi|330834835|ref|YP_004409563.1| - 0.014 12.7 26.0 0.018 12.3 18.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Effector_1 PF04518.7 gi|330834835|ref|YP_004409563.1| - 0.015 14.3 21.1 0.14 11.1 6.2 2.1 1 1 1 2 2 2 0 Effector from type III secretion system Bacillus_HBL PF05791.6 gi|330834835|ref|YP_004409563.1| - 0.016 14.6 26.8 0.076 12.3 13.3 2.3 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Seryl_tRNA_N PF02403.17 gi|330834835|ref|YP_004409563.1| - 0.019 15.0 8.7 0.019 15.0 6.0 3.4 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain Filament PF00038.16 gi|330834835|ref|YP_004409563.1| - 0.02 14.3 28.8 0.039 13.4 20.0 1.5 1 0 0 1 1 1 0 Intermediate filament protein AAA_27 PF13514.1 gi|330834835|ref|YP_004409563.1| - 0.021 12.5 21.4 0.034 11.8 14.8 1.3 1 0 0 1 1 1 0 AAA domain Baculo_PEP_C PF04513.7 gi|330834835|ref|YP_004409563.1| - 0.022 14.5 21.3 0.12 12.1 3.7 3.2 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FAT PF02259.18 gi|330834835|ref|YP_004409563.1| - 0.023 13.6 7.6 0.035 13.1 5.3 1.4 1 0 0 1 1 1 0 FAT domain Myosin_tail_1 PF01576.14 gi|330834835|ref|YP_004409563.1| - 0.035 11.8 32.6 0.033 11.9 21.8 1.4 1 1 0 1 1 1 0 Myosin tail HAP1_N PF04849.8 gi|330834835|ref|YP_004409563.1| - 0.062 12.2 31.6 0.27 10.1 21.9 1.9 1 1 0 1 1 1 0 HAP1 N-terminal conserved region COG5 PF10392.4 gi|330834835|ref|YP_004409563.1| - 0.068 13.1 16.8 0.37 10.7 3.5 2.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DUF1759 PF03564.10 gi|330834835|ref|YP_004409563.1| - 0.073 12.8 19.2 13 5.5 11.6 3.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1759) TPR_MLP1_2 PF07926.7 gi|330834835|ref|YP_004409563.1| - 0.1 12.3 32.3 0.73 9.5 10.0 3.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF148 PF02520.12 gi|330834835|ref|YP_004409563.1| - 0.11 12.2 25.1 0.57 9.9 6.2 3.5 1 1 1 2 2 2 0 Domain of unknown function DUF148 ATG16 PF08614.6 gi|330834835|ref|YP_004409563.1| - 0.11 12.2 29.1 0.15 11.8 6.0 3.3 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Tektin PF03148.9 gi|330834835|ref|YP_004409563.1| - 0.12 10.9 26.7 0.25 9.8 13.6 2.3 1 1 1 2 2 2 0 Tektin family DASH_Spc34 PF08657.5 gi|330834835|ref|YP_004409563.1| - 0.12 12.0 29.2 1.9e+02 1.5 19.2 2.5 1 1 0 1 1 1 0 DASH complex subunit Spc34 ERM PF00769.14 gi|330834835|ref|YP_004409563.1| - 0.13 11.7 31.0 0.19 11.2 20.4 2.0 1 1 0 1 1 1 0 Ezrin/radixin/moesin family HOOK PF05622.7 gi|330834835|ref|YP_004409563.1| - 0.14 9.9 31.3 0.054 11.3 19.5 1.7 1 1 1 2 2 2 0 HOOK protein SlyX PF04102.7 gi|330834835|ref|YP_004409563.1| - 0.18 12.2 27.8 0.29 11.5 5.3 4.2 2 1 2 4 4 3 0 SlyX DUF812 PF05667.6 gi|330834835|ref|YP_004409563.1| - 0.18 10.2 28.3 0.58 8.6 19.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF812) DUF16 PF01519.11 gi|330834835|ref|YP_004409563.1| - 0.18 12.0 29.9 1.5e+04 -5.6 20.7 3.7 1 1 0 1 1 0 0 Protein of unknown function DUF16 Cast PF10174.4 gi|330834835|ref|YP_004409563.1| - 0.18 9.8 30.5 24 2.7 6.0 1.9 1 1 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone DUF4279 PF14106.1 gi|330834835|ref|YP_004409563.1| - 0.19 11.5 13.9 7.5 6.4 0.3 4.4 1 1 3 4 4 4 0 Domain of unknown function (DUF4279) MCPsignal PF00015.16 gi|330834835|ref|YP_004409563.1| - 0.21 11.1 17.8 0.33 10.4 11.3 1.9 1 1 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain PspA_IM30 PF04012.7 gi|330834835|ref|YP_004409563.1| - 0.33 10.2 25.6 1.3 8.2 17.6 2.0 1 1 0 1 1 1 0 PspA/IM30 family WEMBL PF05701.6 gi|330834835|ref|YP_004409563.1| - 0.39 9.1 32.6 0.41 9.0 21.0 1.6 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Phage_GP20 PF06810.6 gi|330834835|ref|YP_004409563.1| - 0.39 10.1 32.5 0.57 9.6 6.0 3.6 2 1 1 3 3 3 0 Phage minor structural protein GP20 BRO1 PF03097.13 gi|330834835|ref|YP_004409563.1| - 0.41 9.3 14.6 0.075 11.7 0.3 2.4 1 1 1 2 2 2 0 BRO1-like domain TroA PF01297.12 gi|330834835|ref|YP_004409563.1| - 0.42 9.8 10.0 0.76 8.9 6.9 1.3 1 0 0 1 1 1 0 Periplasmic solute binding protein family Z1 PF10593.4 gi|330834835|ref|YP_004409563.1| - 0.43 9.7 19.1 0.14 11.3 6.2 2.1 1 1 1 2 2 2 0 Z1 domain NPV_P10 PF05531.7 gi|330834835|ref|YP_004409563.1| - 0.54 10.5 25.5 2.4 8.4 0.5 4.6 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.16 gi|330834835|ref|YP_004409563.1| - 0.66 10.2 23.2 2.2 8.6 4.4 2.7 1 1 1 2 2 2 0 Spectrin repeat DUF641 PF04859.7 gi|330834835|ref|YP_004409563.1| - 0.68 9.6 20.5 2.9 7.6 6.2 2.8 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) APG17 PF04108.7 gi|330834835|ref|YP_004409563.1| - 0.69 8.6 23.9 2.6 6.7 0.8 3.1 1 1 2 3 3 3 0 Autophagy protein Apg17 Phasin_2 PF09361.5 gi|330834835|ref|YP_004409563.1| - 0.73 9.8 14.4 3.3 7.8 2.0 3.6 1 1 3 4 4 4 0 Phasin protein GP41 PF00517.12 gi|330834835|ref|YP_004409563.1| - 0.73 9.3 20.7 0.59 9.6 1.6 3.5 1 1 2 3 3 3 0 Retroviral envelope protein SPX PF03105.14 gi|330834835|ref|YP_004409563.1| - 0.85 9.3 17.4 1.5 8.5 12.1 1.4 1 0 0 1 1 1 0 SPX domain Phage_GPO PF05929.6 gi|330834835|ref|YP_004409563.1| - 0.85 8.8 21.5 1.5 7.9 5.5 2.4 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase FlgN PF05130.7 gi|330834835|ref|YP_004409563.1| - 0.9 9.7 26.2 25 5.0 6.1 2.9 1 1 1 2 2 2 0 FlgN protein DUF3072 PF11272.3 gi|330834835|ref|YP_004409563.1| - 1 9.0 8.2 43 3.8 0.1 4.1 4 0 0 4 4 3 0 Protein of unknown function (DUF3072) IFT57 PF10498.4 gi|330834835|ref|YP_004409563.1| - 1.2 7.8 29.1 3.4 6.3 5.6 2.4 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 ADIP PF11559.3 gi|330834835|ref|YP_004409563.1| - 1.3 8.9 33.5 1.6 8.6 7.0 3.1 2 1 2 4 4 3 0 Afadin- and alpha -actinin-Binding DUF4446 PF14584.1 gi|330834835|ref|YP_004409563.1| - 1.3 8.8 19.9 1.7 8.4 4.2 3.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) LOH1CR12 PF10158.4 gi|330834835|ref|YP_004409563.1| - 1.3 8.8 18.6 0.62 9.8 4.7 3.0 1 1 2 3 3 3 0 Tumour suppressor protein GBP_C PF02841.9 gi|330834835|ref|YP_004409563.1| - 1.3 8.1 26.4 2.8 7.0 18.3 1.6 1 1 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF3552 PF12072.3 gi|330834835|ref|YP_004409563.1| - 1.4 8.0 31.6 6.5 5.9 20.7 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF4618 PF15397.1 gi|330834835|ref|YP_004409563.1| - 1.5 8.0 28.8 3.6 6.8 5.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Syntaxin PF00804.20 gi|330834835|ref|YP_004409563.1| - 1.8 8.7 32.8 14 5.8 7.6 3.4 2 1 1 3 3 1 0 Syntaxin ArdA PF07275.6 gi|330834835|ref|YP_004409563.1| - 2.3 8.4 12.3 15 5.8 0.9 2.7 1 1 3 4 4 4 0 Antirestriction protein (ArdA) Mnd1 PF03962.10 gi|330834835|ref|YP_004409563.1| - 2.4 7.7 28.0 2.7 7.5 12.6 2.6 1 1 1 2 2 2 0 Mnd1 family ING PF12998.2 gi|330834835|ref|YP_004409563.1| - 2.6 8.3 21.5 0.54 10.5 3.6 3.4 1 1 3 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding HAUS-augmin3 PF14932.1 gi|330834835|ref|YP_004409563.1| - 2.6 7.1 30.3 1.9 7.5 11.8 2.4 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 TPR_7 PF13176.1 gi|330834835|ref|YP_004409563.1| - 2.7 8.0 6.9 11 6.0 0.1 4.0 2 1 1 3 3 2 0 Tetratricopeptide repeat BTAD PF03704.12 gi|330834835|ref|YP_004409563.1| - 2.7 8.2 9.0 10 6.4 0.6 2.4 1 1 1 2 2 2 0 Bacterial transcriptional activator domain DUF4200 PF13863.1 gi|330834835|ref|YP_004409563.1| - 2.8 7.9 35.2 1.3 8.9 16.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF848 PF05852.6 gi|330834835|ref|YP_004409563.1| - 3 7.6 29.4 0.13 12.1 7.8 3.0 2 1 2 4 4 3 0 Gammaherpesvirus protein of unknown function (DUF848) RP-C_C PF11800.3 gi|330834835|ref|YP_004409563.1| - 3.1 7.4 10.9 5.4 6.6 7.6 1.4 1 0 0 1 1 1 0 Replication protein C C-terminal region BLOC1_2 PF10046.4 gi|330834835|ref|YP_004409563.1| - 3.3 7.9 30.5 2.3 8.4 6.7 3.4 2 1 1 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COG2 PF06148.6 gi|330834835|ref|YP_004409563.1| - 3.3 7.5 20.2 15 5.4 4.6 3.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 BRE1 PF08647.6 gi|330834835|ref|YP_004409563.1| - 3.4 7.7 30.6 1.5 8.8 11.9 4.4 1 1 4 5 5 5 0 BRE1 E3 ubiquitin ligase MbeD_MobD PF04899.7 gi|330834835|ref|YP_004409563.1| - 3.5 7.6 13.1 28 4.6 1.3 3.7 1 1 2 3 3 3 0 MbeD/MobD like Vps54 PF07928.7 gi|330834835|ref|YP_004409563.1| - 3.8 7.6 9.5 0.51 10.4 0.6 3.0 1 1 2 3 3 3 0 Vps54-like protein Mod_r PF07200.8 gi|330834835|ref|YP_004409563.1| - 4.1 7.3 31.3 4.1 7.3 10.4 2.9 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.3 gi|330834835|ref|YP_004409563.1| - 4.2 6.5 26.2 5 6.3 7.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) ACCA PF03255.9 gi|330834835|ref|YP_004409563.1| - 5.6 6.5 22.5 4.5 6.8 4.0 3.9 2 1 2 4 4 4 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Laminin_II PF06009.7 gi|330834835|ref|YP_004409563.1| - 6.1 6.6 28.0 0.22 11.2 7.9 2.9 2 1 2 4 4 3 0 Laminin Domain II MutS_III PF05192.13 gi|330834835|ref|YP_004409563.1| - 6.6 6.4 11.4 47 3.6 8.0 2.1 1 1 0 1 1 1 0 MutS domain III Sec20 PF03908.8 gi|330834835|ref|YP_004409563.1| - 7 6.4 18.3 4.2 7.1 0.9 4.2 1 1 3 4 4 4 0 Sec20 DivIVA PF05103.8 gi|330834835|ref|YP_004409563.1| - 7.8 6.5 35.3 0.11 12.5 15.9 3.0 2 1 1 3 3 2 0 DivIVA protein TMPIT PF07851.8 gi|330834835|ref|YP_004409563.1| - 9.2 5.2 22.6 10 5.0 5.4 2.3 1 1 1 2 2 2 0 TMPIT-like protein MFS_1 PF07690.11 gi|330834836|ref|YP_004409564.1| - 9.9e-29 100.1 72.8 1.1e-24 86.7 28.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF302 PF03625.9 gi|330834838|ref|YP_004409566.1| - 4.9e-22 77.2 0.0 6.8e-22 76.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF302 NAC PF01849.13 gi|330834838|ref|YP_004409566.1| - 0.13 11.7 0.0 0.28 10.7 0.0 1.6 1 0 0 1 1 1 0 NAC domain SLAC1 PF03595.12 gi|330834839|ref|YP_004409567.1| - 1.8e-47 161.6 36.6 2e-47 161.4 25.4 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Ald_Xan_dh_C2 PF02738.13 gi|330834840|ref|YP_004409568.1| - 1.4e-100 337.1 0.0 7.2e-80 268.8 0.0 2.1 1 1 1 2 2 2 2 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330834840|ref|YP_004409568.1| - 4.2e-11 42.9 0.0 1.2e-10 41.4 0.0 1.8 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AA_permease_2 PF13520.1 gi|330834841|ref|YP_004409569.1| - 6.9e-22 77.5 55.4 1.2e-21 76.8 38.3 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330834841|ref|YP_004409569.1| - 0.03 12.6 48.8 0.0058 15.0 31.2 1.7 1 1 0 1 1 1 0 Amino acid permease Orthopox_F8 PF05886.6 gi|330834842|ref|YP_004409570.1| - 0.068 13.0 0.1 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 Orthopoxvirus F8 protein NAD_kinase PF01513.16 gi|330834843|ref|YP_004409571.1| - 4.9e-30 104.2 0.0 6e-30 103.9 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase TrmB PF01978.14 gi|330834843|ref|YP_004409571.1| - 2e-05 24.1 0.4 4.9e-05 22.9 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330834843|ref|YP_004409571.1| - 0.00026 20.7 0.0 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|330834843|ref|YP_004409571.1| - 0.00027 21.0 0.0 0.00058 19.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.6 gi|330834843|ref|YP_004409571.1| - 0.00043 20.1 0.0 0.00087 19.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_DeoR PF08220.7 gi|330834843|ref|YP_004409571.1| - 0.00059 19.3 0.0 0.0013 18.1 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_24 PF13412.1 gi|330834843|ref|YP_004409571.1| - 0.001 18.3 0.1 0.0026 17.1 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|330834843|ref|YP_004409571.1| - 0.0012 18.4 0.0 0.003 17.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|330834843|ref|YP_004409571.1| - 0.0013 18.3 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|330834843|ref|YP_004409571.1| - 0.0028 17.2 0.0 0.0049 16.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF3489 PF11994.3 gi|330834843|ref|YP_004409571.1| - 0.0082 16.0 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) FeoC PF09012.5 gi|330834843|ref|YP_004409571.1| - 0.014 15.0 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator PaaX PF07848.7 gi|330834843|ref|YP_004409571.1| - 0.018 15.0 0.0 0.049 13.6 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein HTH_12 PF08461.5 gi|330834843|ref|YP_004409571.1| - 0.029 14.0 0.1 0.087 12.5 0.1 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|330834843|ref|YP_004409571.1| - 0.043 14.1 0.0 0.092 13.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|330834843|ref|YP_004409571.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|330834843|ref|YP_004409571.1| - 0.059 13.0 0.1 0.16 11.7 0.0 1.7 2 0 0 2 2 2 0 MarR family MerR_1 PF13411.1 gi|330834843|ref|YP_004409571.1| - 0.066 12.9 0.2 0.25 11.1 0.0 2.0 2 0 0 2 2 2 0 MerR HTH family regulatory protein MerR PF00376.18 gi|330834843|ref|YP_004409571.1| - 0.084 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein GntR PF00392.16 gi|330834843|ref|YP_004409571.1| - 0.099 12.0 0.1 0.24 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Sialidase_penC PF12135.3 gi|330834843|ref|YP_004409571.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Sialidase enzyme penultimate C terminal domain CRPA PF05745.6 gi|330834844|ref|YP_004409572.1| - 1.1 9.0 7.2 1.3 8.8 5.0 1.1 1 0 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) DUF2614 PF11023.3 gi|330834844|ref|YP_004409572.1| - 8.4 6.2 8.3 12 5.7 5.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2614) Glyco_hydro_12 PF01670.11 gi|330834846|ref|YP_004409574.1| - 2.6e-13 50.0 1.4 7.5e-13 48.5 1.0 1.8 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 DUF1049 PF06305.6 gi|330834846|ref|YP_004409574.1| - 0.091 12.2 0.1 0.21 11.0 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1049) DUF3553 PF12073.3 gi|330834846|ref|YP_004409574.1| - 0.1 11.9 0.2 0.27 10.6 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3553) 4HB_MCP_1 PF12729.2 gi|330834846|ref|YP_004409574.1| - 0.13 11.6 0.1 0.22 10.8 0.1 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction Fun_ATP-synt_8 PF05933.8 gi|330834846|ref|YP_004409574.1| - 9.8 6.3 7.7 2.5 8.2 1.5 2.6 3 0 0 3 3 3 0 Fungal ATP synthase protein 8 (A6L) MFS_1 PF07690.11 gi|330834847|ref|YP_004409575.1| - 1.8e-37 128.8 58.3 3.1e-24 85.3 15.2 3.3 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330834847|ref|YP_004409575.1| - 1.1e-06 27.5 37.8 0.0003 19.4 10.5 3.2 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|330834847|ref|YP_004409575.1| - 0.00056 18.1 2.4 0.00056 18.1 1.6 2.3 2 0 0 2 2 2 1 Transmembrane secretion effector DUF2583 PF10762.4 gi|330834847|ref|YP_004409575.1| - 0.076 13.1 6.1 0.65 10.1 0.1 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) ABC_tran PF00005.22 gi|330834848|ref|YP_004409576.1| - 5.6e-29 101.1 0.0 7.5e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834848|ref|YP_004409576.1| - 2.7e-14 53.7 0.5 1.1e-10 41.9 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330834848|ref|YP_004409576.1| - 3.7e-05 22.9 0.1 0.0031 16.6 0.1 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|330834848|ref|YP_004409576.1| - 0.0005 19.3 0.4 0.27 10.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330834848|ref|YP_004409576.1| - 0.00076 18.9 0.0 0.0013 18.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|330834848|ref|YP_004409576.1| - 0.0052 16.3 0.0 0.009 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330834848|ref|YP_004409576.1| - 0.0055 17.0 0.0 0.01 16.2 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330834848|ref|YP_004409576.1| - 0.12 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|330834848|ref|YP_004409576.1| - 0.16 12.7 0.2 0.26 12.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain Ubie_methyltran PF01209.13 gi|330834851|ref|YP_004409579.1| - 3.2e-22 78.7 0.4 4.9e-22 78.1 0.3 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.7 gi|330834851|ref|YP_004409579.1| - 1.4e-13 51.1 0.0 2.1e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330834851|ref|YP_004409579.1| - 1.1e-10 41.3 0.0 1.7e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330834851|ref|YP_004409579.1| - 4.9e-10 39.6 0.0 9.5e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330834851|ref|YP_004409579.1| - 1.9e-07 30.9 0.0 2.5e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330834851|ref|YP_004409579.1| - 1.4e-06 28.6 0.0 2.8e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|330834851|ref|YP_004409579.1| - 2.6e-06 26.9 0.0 3.6e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|330834851|ref|YP_004409579.1| - 0.00019 22.0 0.0 0.0007 20.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330834851|ref|YP_004409579.1| - 0.0011 18.3 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|330834851|ref|YP_004409579.1| - 0.013 15.1 0.0 0.027 14.1 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain DUF981 PF06168.6 gi|330834852|ref|YP_004409580.1| - 4.6e-64 215.7 17.1 5.1e-64 215.5 11.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Colicin_V PF02674.11 gi|330834852|ref|YP_004409580.1| - 1.2e-05 25.2 6.0 1.2e-05 25.2 4.2 2.5 1 1 0 2 2 2 1 Colicin V production protein Cyt_c_ox_IV PF12270.3 gi|330834852|ref|YP_004409580.1| - 0.014 15.1 0.0 0.014 15.1 0.0 2.6 2 1 1 3 3 3 0 Cytochrome c oxidase subunit IV Prion_bPrPp PF11587.3 gi|330834852|ref|YP_004409580.1| - 0.5 10.0 2.2 9.2 6.0 0.7 2.7 2 0 0 2 2 2 0 Major prion protein bPrPp - N terminal Tetraspannin PF00335.15 gi|330834852|ref|YP_004409580.1| - 1.4 8.1 23.3 0.71 9.1 1.5 3.0 1 1 2 3 3 3 0 Tetraspanin family GP41 PF00517.12 gi|330834852|ref|YP_004409580.1| - 7.4 6.0 6.5 4 6.9 0.2 2.3 2 1 0 2 2 2 0 Retroviral envelope protein DUF1129 PF06570.6 gi|330834852|ref|YP_004409580.1| - 8.5 5.6 8.7 0.52 9.5 1.2 2.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) Hemerythrin PF01814.18 gi|330834853|ref|YP_004409581.1| - 0.00079 19.6 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Thermopsin PF05317.6 gi|330834856|ref|YP_004409584.1| - 6e-63 212.2 21.2 6e-63 212.2 14.7 3.9 4 1 0 5 5 5 1 Thermopsin DUF2518 PF10726.4 gi|330834859|ref|YP_004409587.1| - 2.9 7.4 8.8 2.7 7.5 5.6 1.3 1 1 0 1 1 1 0 Protein of function (DUF2518) ABC_tran PF00005.22 gi|330834860|ref|YP_004409588.1| - 4.2e-24 85.3 0.0 6.3e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330834860|ref|YP_004409588.1| - 1.5e-16 61.2 0.3 1.2e-07 31.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330834860|ref|YP_004409588.1| - 1.1e-07 31.2 0.0 0.00041 19.5 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330834860|ref|YP_004409588.1| - 3.2e-05 24.3 0.2 3.7e-05 24.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330834860|ref|YP_004409588.1| - 0.002 17.9 0.0 0.0045 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|330834860|ref|YP_004409588.1| - 0.0027 16.5 0.0 0.0044 15.8 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_29 PF13555.1 gi|330834860|ref|YP_004409588.1| - 0.0035 16.8 0.4 0.0063 16.0 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330834860|ref|YP_004409588.1| - 0.0066 15.7 0.5 1.8 7.7 0.4 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330834860|ref|YP_004409588.1| - 0.011 15.9 0.1 0.069 13.3 0.0 2.1 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|330834860|ref|YP_004409588.1| - 0.012 15.0 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|330834860|ref|YP_004409588.1| - 0.047 13.2 0.0 0.08 12.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|330834860|ref|YP_004409588.1| - 0.062 12.6 0.0 0.11 11.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain OST-HTH PF12872.2 gi|330834860|ref|YP_004409588.1| - 0.066 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 OST-HTH/LOTUS domain ATP_bind_1 PF03029.12 gi|330834860|ref|YP_004409588.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Mur_ligase_M PF08245.7 gi|330834860|ref|YP_004409588.1| - 0.14 12.2 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Mur ligase middle domain AAA_19 PF13245.1 gi|330834860|ref|YP_004409588.1| - 0.14 11.8 1.4 0.2 11.4 0.2 1.8 2 0 0 2 2 2 0 Part of AAA domain IstB_IS21 PF01695.12 gi|330834860|ref|YP_004409588.1| - 0.16 11.3 0.7 2.8 7.3 0.0 2.4 3 0 0 3 3 3 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|330834860|ref|YP_004409588.1| - 0.18 11.0 0.1 0.35 10.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PGPGW PF09656.5 gi|330834863|ref|YP_004409591.1| - 2.1 7.6 7.1 1.6 8.0 1.0 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) MFS_1 PF07690.11 gi|330834864|ref|YP_004409592.1| - 2.7e-26 92.1 44.6 3.6e-17 62.1 12.1 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|330834864|ref|YP_004409592.1| - 6e-05 21.7 17.6 0.00043 18.9 3.3 2.6 2 1 1 3 3 3 2 LacY proton/sugar symporter Tir_receptor_C PF07489.6 gi|330834864|ref|YP_004409592.1| - 0.1 12.3 0.9 0.17 11.6 0.6 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus EamA PF00892.15 gi|330834866|ref|YP_004409594.1| - 1.3e-14 54.3 25.6 5.7e-12 45.7 10.6 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|330834866|ref|YP_004409594.1| - 0.0055 16.8 21.3 0.013 15.6 8.3 2.4 2 1 0 2 2 2 2 Multidrug resistance efflux transporter DUF4112 PF13430.1 gi|330834866|ref|YP_004409594.1| - 0.15 11.9 5.1 0.035 14.0 1.3 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4112) DUF373 PF04123.8 gi|330834866|ref|YP_004409594.1| - 4.1 6.3 10.6 8.7 5.2 7.4 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Sugar_tr PF00083.19 gi|330834867|ref|YP_004409595.1| - 3.3e-84 283.0 33.2 3.9e-84 282.8 23.0 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330834867|ref|YP_004409595.1| - 3.1e-22 78.7 45.5 2.7e-20 72.3 26.2 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily YtxH PF12732.2 gi|330834867|ref|YP_004409595.1| - 1.3 9.3 0.0 1.3 9.3 0.0 3.2 4 0 0 4 4 4 0 YtxH-like protein HTH_IclR PF09339.5 gi|330834869|ref|YP_004409597.1| - 1.9e-08 33.7 0.0 3.6e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|330834869|ref|YP_004409597.1| - 2.7e-05 23.7 0.0 5.4e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330834869|ref|YP_004409597.1| - 5.8e-05 22.3 0.0 0.00012 21.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330834869|ref|YP_004409597.1| - 0.00021 20.9 0.1 0.00044 19.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330834869|ref|YP_004409597.1| - 0.00081 19.1 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|330834869|ref|YP_004409597.1| - 0.00088 19.5 0.2 0.0029 17.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|330834869|ref|YP_004409597.1| - 0.0016 18.5 0.1 0.0031 17.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330834869|ref|YP_004409597.1| - 0.006 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|330834869|ref|YP_004409597.1| - 0.013 15.4 0.1 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|330834869|ref|YP_004409597.1| - 0.023 14.8 0.0 0.043 13.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.1 gi|330834869|ref|YP_004409597.1| - 0.038 13.6 0.1 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.7 gi|330834869|ref|YP_004409597.1| - 0.04 13.5 0.1 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_psq PF05225.11 gi|330834869|ref|YP_004409597.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Rieske PF00355.21 gi|330834871|ref|YP_004409599.1| - 1.5e-16 59.7 0.0 2.3e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ni_hydr_CYTB PF01292.15 gi|330834871|ref|YP_004409599.1| - 4.7e-11 42.4 11.4 7.5e-11 41.7 7.9 1.3 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Cytochrom_B_N PF00033.14 gi|330834871|ref|YP_004409599.1| - 2.5e-09 36.7 14.7 2.3e-08 33.6 10.2 2.1 1 1 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB PsbN PF02468.10 gi|330834871|ref|YP_004409599.1| - 0.13 11.9 0.9 0.68 9.5 0.1 2.6 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) RE_HaeIII PF09556.5 gi|330834872|ref|YP_004409600.1| - 0.013 14.4 0.0 0.024 13.5 0.0 1.5 1 1 0 1 1 1 0 HaeIII restriction endonuclease LolA PF03548.10 gi|330834872|ref|YP_004409600.1| - 0.017 14.7 0.0 0.029 13.9 0.0 1.4 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA YqbF PF14553.1 gi|330834873|ref|YP_004409601.1| - 0.14 11.8 0.1 0.16 11.6 0.1 1.1 1 0 0 1 1 1 0 YqbF, hypothetical protein domain DUF973 PF06157.6 gi|330834874|ref|YP_004409602.1| - 7.8e-32 110.3 17.1 1.4e-27 96.4 1.5 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF973 PF06157.6 gi|330834875|ref|YP_004409603.1| - 5.6e-52 176.4 30.8 7.6e-52 176.0 21.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.8 gi|330834875|ref|YP_004409603.1| - 0.0013 18.7 40.4 0.032 14.2 16.2 3.9 1 1 3 4 4 4 3 Protein of unknown function (DUF996) DUF4500 PF14937.1 gi|330834875|ref|YP_004409603.1| - 0.027 14.2 3.7 0.054 13.3 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4500) DUF4013 PF13197.1 gi|330834875|ref|YP_004409603.1| - 2.4 7.4 43.3 1.5 8.0 19.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) UvrB PF12344.3 gi|330834876|ref|YP_004409604.1| - 0.005 16.3 0.4 0.018 14.5 0.1 2.0 1 1 1 2 2 2 1 Ultra-violet resistance protein B Consortin_C PF15281.1 gi|330834876|ref|YP_004409604.1| - 0.066 12.7 0.0 0.083 12.3 0.0 1.1 1 0 0 1 1 1 0 Consortin C-terminus AIG1 PF04548.11 gi|330834876|ref|YP_004409604.1| - 0.084 11.9 0.0 0.096 11.7 0.0 1.1 1 0 0 1 1 1 0 AIG1 family YkyA PF10368.4 gi|330834877|ref|YP_004409605.1| - 0.0059 15.9 0.2 0.0078 15.5 0.1 1.1 1 0 0 1 1 1 1 Putative cell-wall binding lipoprotein PsbQ PF05757.6 gi|330834877|ref|YP_004409605.1| - 0.022 14.1 0.4 0.041 13.2 0.2 1.5 1 1 1 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) HTH_24 PF13412.1 gi|330834878|ref|YP_004409606.1| - 4.6e-22 77.1 1.8 8.5e-14 50.6 0.7 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330834878|ref|YP_004409606.1| - 3.2e-15 55.3 0.6 2.3e-08 33.4 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|330834878|ref|YP_004409606.1| - 2.6e-08 33.4 0.0 0.0096 15.5 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.2 gi|330834878|ref|YP_004409606.1| - 5.3e-07 29.3 0.1 0.0045 16.7 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.17 gi|330834878|ref|YP_004409606.1| - 5.5e-06 25.9 0.0 0.025 14.2 0.1 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|330834878|ref|YP_004409606.1| - 1.6e-05 24.5 0.1 0.04 13.6 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|330834878|ref|YP_004409606.1| - 2.6e-05 23.7 0.2 0.05 13.2 0.1 2.5 2 0 0 2 2 2 2 HTH domain HTH_23 PF13384.1 gi|330834878|ref|YP_004409606.1| - 4.8e-05 22.8 0.0 0.13 11.9 0.0 2.4 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Mga PF08280.6 gi|330834878|ref|YP_004409606.1| - 5.5e-05 22.8 0.0 0.0016 18.1 0.0 2.8 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_28 PF13518.1 gi|330834878|ref|YP_004409606.1| - 0.00019 21.3 0.0 0.012 15.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330834878|ref|YP_004409606.1| - 0.00074 19.1 0.0 0.2 11.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|330834878|ref|YP_004409606.1| - 0.00075 19.2 0.0 0.0045 16.7 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|330834878|ref|YP_004409606.1| - 0.0042 16.7 0.0 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_27 PF13463.1 gi|330834878|ref|YP_004409606.1| - 0.0047 17.2 0.0 0.12 12.6 0.0 2.6 3 0 0 3 3 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|330834878|ref|YP_004409606.1| - 0.005 16.6 0.1 0.021 14.6 0.0 2.2 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_39 PF14090.1 gi|330834878|ref|YP_004409606.1| - 0.0067 15.8 0.2 0.031 13.7 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|330834878|ref|YP_004409606.1| - 0.0073 16.1 0.2 0.027 14.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|330834878|ref|YP_004409606.1| - 0.011 15.8 0.1 2.2 8.5 0.1 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|330834878|ref|YP_004409606.1| - 0.017 15.1 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|330834878|ref|YP_004409606.1| - 0.018 14.5 0.0 5.8 6.5 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|330834878|ref|YP_004409606.1| - 0.026 14.1 0.1 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 HTH DNA binding domain Fe_dep_repress PF01325.14 gi|330834878|ref|YP_004409606.1| - 0.028 14.3 0.0 1.1 9.2 0.0 2.5 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_8 PF02954.14 gi|330834878|ref|YP_004409606.1| - 0.036 13.6 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_26 PF13443.1 gi|330834878|ref|YP_004409606.1| - 0.048 13.8 0.1 0.47 10.6 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_36 PF13730.1 gi|330834878|ref|YP_004409606.1| - 0.071 13.2 0.1 0.24 11.5 0.1 1.9 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|330834878|ref|YP_004409606.1| - 0.093 12.8 0.0 17 5.5 0.0 2.7 3 0 0 3 3 3 0 Winged helix-turn helix Rrf2 PF02082.15 gi|330834878|ref|YP_004409606.1| - 0.12 12.4 0.0 7.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator MMPL PF03176.10 gi|330834879|ref|YP_004409607.1| - 2.4e-37 128.4 29.9 1.1e-19 70.3 10.2 2.7 2 2 0 2 2 2 2 MMPL family Peptidase_S41 PF03572.13 gi|330834879|ref|YP_004409607.1| - 0.021 14.2 0.1 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S41 MFS_1 PF07690.11 gi|330834880|ref|YP_004409608.1| - 4.3e-24 84.8 72.2 2.6e-19 69.1 29.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily CBS PF00571.23 gi|330834884|ref|YP_004409612.1| - 5.9e-26 89.9 2.6 1.8e-13 50.0 0.1 2.0 2 0 0 2 2 2 2 CBS domain PTA_PTB PF01515.14 gi|330834884|ref|YP_004409612.1| - 0.071 12.1 0.1 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Phosphate acetyl/butaryl transferase DUF218 PF02698.12 gi|330834884|ref|YP_004409612.1| - 0.093 12.2 0.1 0.11 11.9 0.1 1.1 1 0 0 1 1 1 0 DUF218 domain Fer4_7 PF12838.2 gi|330834885|ref|YP_004409613.1| - 5e-07 30.0 24.1 6.9e-05 23.1 8.7 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330834885|ref|YP_004409613.1| - 2.4e-06 26.8 4.2 2.4e-06 26.8 2.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330834885|ref|YP_004409613.1| - 1.9e-05 24.7 11.7 4.8e-05 23.5 8.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330834885|ref|YP_004409613.1| - 2e-05 24.7 8.9 0.038 14.5 3.2 2.4 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330834885|ref|YP_004409613.1| - 2.4e-05 24.0 11.7 5.3e-05 22.9 8.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330834885|ref|YP_004409613.1| - 5.2e-05 22.9 16.2 0.00018 21.2 2.5 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330834885|ref|YP_004409613.1| - 7.1e-05 22.4 3.0 7.1e-05 22.4 2.1 2.6 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330834885|ref|YP_004409613.1| - 0.00031 20.8 15.6 0.00092 19.3 2.3 2.3 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_11 PF13247.1 gi|330834885|ref|YP_004409613.1| - 0.00042 20.1 4.8 0.00059 19.6 3.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330834885|ref|YP_004409613.1| - 0.0016 18.7 9.7 0.0049 17.1 1.7 2.3 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF_QO PF05187.8 gi|330834885|ref|YP_004409613.1| - 0.002 18.1 0.2 0.0028 17.6 0.1 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase Fer4_8 PF13183.1 gi|330834885|ref|YP_004409613.1| - 0.0024 17.8 2.9 0.0024 17.8 2.0 2.3 1 1 2 3 3 3 2 4Fe-4S dicluster domain ZZ PF00569.12 gi|330834885|ref|YP_004409613.1| - 0.029 13.8 5.2 0.082 12.4 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, ZZ type Fer4_16 PF13484.1 gi|330834885|ref|YP_004409613.1| - 0.093 13.4 3.3 0.093 13.4 2.3 2.5 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|330834885|ref|YP_004409613.1| - 0.1 12.4 13.2 1.4 8.8 9.3 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330834885|ref|YP_004409613.1| - 0.99 9.8 15.0 0.16 12.4 3.0 2.7 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330834885|ref|YP_004409613.1| - 4.7 7.6 7.9 0.48 10.8 1.6 2.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|330834885|ref|YP_004409613.1| - 7.7 6.1 10.0 3.5 7.3 0.8 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.19 gi|330834886|ref|YP_004409614.1| - 6.7e-17 61.4 0.2 2.2e-07 30.1 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|330834886|ref|YP_004409614.1| - 3.4e-10 39.5 1.2 5.1e-10 39.0 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330834886|ref|YP_004409614.1| - 2.9e-09 37.1 1.0 3.7e-09 36.7 0.5 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|330834886|ref|YP_004409614.1| - 1.2e-07 30.9 2.2 2e-07 30.2 1.5 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.14 gi|330834886|ref|YP_004409614.1| - 2.1e-07 30.3 0.3 0.00054 19.1 0.8 2.6 1 1 1 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|330834886|ref|YP_004409614.1| - 2.8e-07 29.3 4.9 2.3e-06 26.3 1.4 2.2 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|330834886|ref|YP_004409614.1| - 9.9e-06 24.6 4.7 2.2e-05 23.5 3.3 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|330834886|ref|YP_004409614.1| - 2e-05 24.5 0.3 4.5e-05 23.4 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|330834886|ref|YP_004409614.1| - 2.6e-05 24.3 0.2 5.3e-05 23.3 0.2 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|330834886|ref|YP_004409614.1| - 6.6e-05 21.9 0.1 0.00014 20.9 0.1 1.6 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|330834886|ref|YP_004409614.1| - 0.00011 22.5 2.2 0.00078 19.8 0.5 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330834886|ref|YP_004409614.1| - 0.00025 20.2 2.0 0.00025 20.2 0.5 1.6 2 0 0 2 2 2 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|330834886|ref|YP_004409614.1| - 0.085 12.4 0.4 0.15 11.5 0.3 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Multi_ubiq PF14452.1 gi|330834886|ref|YP_004409614.1| - 0.1 12.5 0.2 0.34 10.9 0.1 1.9 1 1 0 1 1 1 0 Multiubiquitin Trp_halogenase PF04820.9 gi|330834886|ref|YP_004409614.1| - 0.34 9.4 1.7 0.29 9.7 0.3 1.5 2 0 0 2 2 2 0 Tryptophan halogenase ETF PF01012.16 gi|330834887|ref|YP_004409615.1| - 5.8e-78 260.2 0.0 2.5e-38 131.3 0.2 2.3 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|330834887|ref|YP_004409615.1| - 7e-32 108.8 0.6 1.6e-31 107.7 0.4 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain DUF3943 PF13084.1 gi|330834887|ref|YP_004409615.1| - 0.03 13.8 0.0 0.062 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) Globin PF00042.17 gi|330834887|ref|YP_004409615.1| - 0.2 12.0 0.1 0.4 11.0 0.1 1.4 1 0 0 1 1 1 0 Globin Nitroreductase PF00881.19 gi|330834889|ref|YP_004409617.1| - 2.9e-29 102.0 0.1 5.2e-29 101.1 0.1 1.4 1 1 0 1 1 1 1 Nitroreductase family DUF3413 PF11893.3 gi|330834893|ref|YP_004409621.1| - 0.013 14.3 7.3 0.018 13.9 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3413) MerC PF03203.9 gi|330834893|ref|YP_004409621.1| - 0.83 10.0 4.9 0.22 11.9 0.6 2.0 2 1 1 3 3 3 0 MerC mercury resistance protein DUF4118 PF13493.1 gi|330834893|ref|YP_004409621.1| - 2.7 8.2 14.4 1 9.5 5.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) DUF4231 PF14015.1 gi|330834893|ref|YP_004409621.1| - 4.6 7.2 6.0 1 9.3 1.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) CbiA PF01656.18 gi|330834894|ref|YP_004409622.1| - 8.1e-13 48.2 1.4 2.5e-12 46.5 0.9 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330834894|ref|YP_004409622.1| - 4.9e-10 39.5 1.0 6.4e-08 32.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain ArsA_ATPase PF02374.10 gi|330834894|ref|YP_004409622.1| - 7.7e-06 25.1 0.8 0.00021 20.4 0.1 2.4 1 1 1 2 2 2 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|330834894|ref|YP_004409622.1| - 0.00037 21.3 0.0 0.00047 20.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|330834894|ref|YP_004409622.1| - 0.003 16.6 0.9 0.011 14.8 0.1 1.9 1 1 1 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|330834894|ref|YP_004409622.1| - 0.0038 16.6 0.2 0.018 14.4 0.1 1.8 1 1 1 2 2 2 1 YhjQ protein AAA_14 PF13173.1 gi|330834894|ref|YP_004409622.1| - 0.028 14.3 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|330834894|ref|YP_004409622.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glycos_transf_2 PF00535.21 gi|330834898|ref|YP_004409626.1| - 0.025 14.2 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 SQS_PSY PF00494.14 gi|330834900|ref|YP_004409628.1| - 3.1e-47 161.0 0.1 3.6e-47 160.8 0.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase FA_hydroxylase PF04116.8 gi|330834901|ref|YP_004409629.1| - 3.5e-08 33.8 16.0 4.5e-08 33.4 11.1 1.1 1 0 0 1 1 1 1 Fatty acid hydroxylase superfamily DAO PF01266.19 gi|330834902|ref|YP_004409630.1| - 1.2e-14 53.9 0.0 2.9e-08 33.0 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330834902|ref|YP_004409630.1| - 2e-14 53.3 0.0 4.9e-14 52.1 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|330834902|ref|YP_004409630.1| - 5.3e-14 52.1 0.0 3.1e-13 49.6 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.19 gi|330834902|ref|YP_004409630.1| - 1.7e-09 37.0 0.0 4.5e-06 25.7 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|330834902|ref|YP_004409630.1| - 2.4e-07 30.1 0.1 1.3e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|330834902|ref|YP_004409630.1| - 5.2e-07 29.9 0.0 0.00012 22.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330834902|ref|YP_004409630.1| - 2e-06 28.1 1.4 0.0016 18.7 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|330834902|ref|YP_004409630.1| - 1.1e-05 25.3 0.0 4.9e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330834902|ref|YP_004409630.1| - 5.8e-05 21.7 0.0 0.0056 15.1 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|330834902|ref|YP_004409630.1| - 0.0001 21.4 0.2 0.00017 20.8 0.1 1.3 1 0 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.2 gi|330834902|ref|YP_004409630.1| - 0.0003 19.9 0.0 0.00087 18.4 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|330834902|ref|YP_004409630.1| - 0.013 14.9 0.2 0.021 14.1 0.2 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|330834902|ref|YP_004409630.1| - 0.023 13.5 0.3 0.041 12.7 0.2 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|330834902|ref|YP_004409630.1| - 0.063 12.9 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|330834902|ref|YP_004409630.1| - 0.077 11.9 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|330834902|ref|YP_004409630.1| - 0.13 12.0 0.1 0.9 9.3 0.1 2.1 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|330834902|ref|YP_004409630.1| - 0.14 10.7 1.4 0.13 10.8 0.1 1.5 2 0 0 2 2 2 0 Tryptophan halogenase Antitoxin-MazE PF04014.13 gi|330834903|ref|YP_004409631.1| - 3.7e-10 39.2 1.6 3.7e-10 39.2 1.1 1.6 2 0 0 2 2 2 1 Antidote-toxin recognition MazE FliW PF02623.10 gi|330834903|ref|YP_004409631.1| - 0.094 12.2 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 FliW protein PIN PF01850.16 gi|330834904|ref|YP_004409632.1| - 7.8e-12 45.5 0.2 1.1e-11 45.1 0.2 1.1 1 0 0 1 1 1 1 PIN domain Sugar_tr PF00083.19 gi|330834909|ref|YP_004409637.1| - 5.4e-37 127.4 14.9 8.2e-37 126.8 10.3 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330834909|ref|YP_004409637.1| - 2.6e-21 75.7 30.9 3.3e-17 62.2 17.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily CbiQ PF02361.11 gi|330834910|ref|YP_004409638.1| - 7.9e-13 48.4 19.0 1.4e-12 47.7 13.2 1.4 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|330834911|ref|YP_004409639.1| - 3.5e-44 150.4 0.1 4.8e-22 78.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|330834911|ref|YP_004409639.1| - 1e-19 71.6 6.4 1.2e-06 28.7 0.0 4.3 2 2 2 4 4 4 4 AAA domain AAA_29 PF13555.1 gi|330834911|ref|YP_004409639.1| - 7.6e-12 44.5 0.9 8.1e-05 22.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330834911|ref|YP_004409639.1| - 4.3e-11 42.4 1.3 0.0003 20.0 0.3 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|330834911|ref|YP_004409639.1| - 6.9e-08 31.8 0.3 0.00046 19.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|330834911|ref|YP_004409639.1| - 1.4e-07 32.0 0.0 0.00031 21.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|330834911|ref|YP_004409639.1| - 3.9e-06 26.1 0.0 0.061 12.4 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|330834911|ref|YP_004409639.1| - 4.3e-06 26.8 0.1 0.047 13.6 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|330834911|ref|YP_004409639.1| - 5.3e-06 27.2 0.9 0.17 12.6 0.1 3.2 3 1 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|330834911|ref|YP_004409639.1| - 7.8e-06 25.8 0.3 0.0067 16.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|330834911|ref|YP_004409639.1| - 1.2e-05 24.8 0.0 0.11 11.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|330834911|ref|YP_004409639.1| - 2.8e-05 23.7 0.0 1.6 8.5 0.0 3.5 3 0 0 3 3 3 1 Part of AAA domain AAA_22 PF13401.1 gi|330834911|ref|YP_004409639.1| - 3.9e-05 23.7 0.6 0.24 11.5 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|330834911|ref|YP_004409639.1| - 5.1e-05 23.5 0.7 0.69 10.2 0.0 3.4 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|330834911|ref|YP_004409639.1| - 9.3e-05 21.6 0.0 0.0017 17.4 0.0 2.5 3 0 0 3 3 3 1 AAA ATPase domain T2SE PF00437.15 gi|330834911|ref|YP_004409639.1| - 0.00011 21.1 1.3 0.23 10.3 0.0 2.7 3 0 0 3 3 3 2 Type II/IV secretion system protein NACHT PF05729.7 gi|330834911|ref|YP_004409639.1| - 0.00012 21.7 0.0 0.16 11.6 0.0 2.5 2 0 0 2 2 2 2 NACHT domain FtsK_SpoIIIE PF01580.13 gi|330834911|ref|YP_004409639.1| - 0.00027 20.4 0.0 0.25 10.8 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|330834911|ref|YP_004409639.1| - 0.00041 20.0 0.0 0.14 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|330834911|ref|YP_004409639.1| - 0.0015 18.0 0.2 1.2 8.5 0.0 2.7 3 0 0 3 3 3 1 AAA-like domain AAA_5 PF07728.9 gi|330834911|ref|YP_004409639.1| - 0.0015 18.2 0.5 1 9.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|330834911|ref|YP_004409639.1| - 0.003 17.3 0.2 0.54 9.9 0.1 2.7 2 0 0 2 2 2 1 NTPase AAA_13 PF13166.1 gi|330834911|ref|YP_004409639.1| - 0.0031 16.0 0.1 0.18 10.2 0.0 2.7 3 0 0 3 3 3 1 AAA domain G-alpha PF00503.15 gi|330834911|ref|YP_004409639.1| - 0.0058 15.3 0.2 1.4 7.5 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit APS_kinase PF01583.15 gi|330834911|ref|YP_004409639.1| - 0.0065 16.1 0.5 1.5 8.4 0.0 3.1 3 0 0 3 3 3 1 Adenylylsulphate kinase MobB PF03205.9 gi|330834911|ref|YP_004409639.1| - 0.0073 16.0 0.3 2.6 7.7 0.0 2.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|330834911|ref|YP_004409639.1| - 0.0076 15.6 0.0 0.34 10.2 0.0 2.2 2 0 0 2 2 2 1 MutS domain V AAA PF00004.24 gi|330834911|ref|YP_004409639.1| - 0.008 16.3 0.0 0.61 10.2 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|330834911|ref|YP_004409639.1| - 0.01 15.7 0.1 0.55 10.1 0.0 3.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|330834911|ref|YP_004409639.1| - 0.011 14.3 0.1 0.14 10.7 0.0 2.5 3 0 0 3 3 3 0 Predicted ATPase of the ABC class UPF0079 PF02367.12 gi|330834911|ref|YP_004409639.1| - 0.013 15.1 0.3 3.4 7.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 DUF815 PF05673.8 gi|330834911|ref|YP_004409639.1| - 0.013 14.4 0.0 2.8 6.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) PduV-EutP PF10662.4 gi|330834911|ref|YP_004409639.1| - 0.014 14.8 0.1 7.3 6.0 0.0 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation AAA_14 PF13173.1 gi|330834911|ref|YP_004409639.1| - 0.015 15.2 0.1 0.39 10.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|330834911|ref|YP_004409639.1| - 0.015 15.4 0.1 4.2 7.5 0.0 2.4 2 0 0 2 2 2 0 RNA helicase MMR_HSR1 PF01926.18 gi|330834911|ref|YP_004409639.1| - 0.022 14.7 1.1 3.5 7.6 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase cobW PF02492.14 gi|330834911|ref|YP_004409639.1| - 0.022 14.2 1.3 0.34 10.3 0.1 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|330834911|ref|YP_004409639.1| - 0.023 13.7 0.0 4.3 6.3 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin VirE PF05272.6 gi|330834911|ref|YP_004409639.1| - 0.023 14.1 0.0 0.67 9.3 0.0 2.2 2 0 0 2 2 2 0 Virulence-associated protein E Miro PF08477.8 gi|330834911|ref|YP_004409639.1| - 0.025 15.0 0.0 3.1 8.3 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein DUF87 PF01935.12 gi|330834911|ref|YP_004409639.1| - 0.027 14.2 3.7 3.1 7.5 0.1 3.4 4 0 0 4 4 3 0 Domain of unknown function DUF87 ATP_bind_1 PF03029.12 gi|330834911|ref|YP_004409639.1| - 0.029 13.9 0.8 4.8 6.6 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein KaiC PF06745.8 gi|330834911|ref|YP_004409639.1| - 0.034 13.2 0.3 0.49 9.4 0.0 2.4 2 0 0 2 2 2 0 KaiC AAA_28 PF13521.1 gi|330834911|ref|YP_004409639.1| - 0.044 13.7 0.1 0.93 9.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain CPT PF07931.7 gi|330834911|ref|YP_004409639.1| - 0.047 13.3 0.3 11 5.5 0.1 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein DAP3 PF10236.4 gi|330834911|ref|YP_004409639.1| - 0.049 12.5 0.7 3.8 6.3 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Sigma54_activat PF00158.21 gi|330834911|ref|YP_004409639.1| - 0.049 13.1 0.0 1.2 8.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain NB-ARC PF00931.17 gi|330834911|ref|YP_004409639.1| - 0.058 12.2 0.1 5.6 5.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain SRP54 PF00448.17 gi|330834911|ref|YP_004409639.1| - 0.079 12.3 0.9 0.49 9.7 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.13 gi|330834911|ref|YP_004409639.1| - 0.1 12.0 0.4 0.41 10.1 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DUF3584 PF12128.3 gi|330834911|ref|YP_004409639.1| - 0.12 9.6 0.1 0.17 9.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) IstB_IS21 PF01695.12 gi|330834911|ref|YP_004409639.1| - 0.14 11.5 0.1 6 6.2 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein Gtr1_RagA PF04670.7 gi|330834911|ref|YP_004409639.1| - 0.44 9.6 2.0 1.3 8.1 0.1 2.2 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Cas_DxTHG PF09455.5 gi|330834913|ref|YP_004409641.1| - 7.5e-36 124.0 4.7 1.2e-35 123.4 3.3 1.3 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Helicase_C_3 PF13625.1 gi|330834913|ref|YP_004409641.1| - 0.019 14.7 0.0 0.042 13.6 0.0 1.5 1 0 0 1 1 1 0 Helicase conserved C-terminal domain Phosphoesterase PF04185.9 gi|330834914|ref|YP_004409642.1| - 2.2e-73 247.6 1.2 3.4e-73 247.0 0.8 1.3 1 0 0 1 1 1 1 Phosphoesterase family DUF2830 PF11125.3 gi|330834916|ref|YP_004409644.1| - 0.45 10.2 3.1 0.36 10.5 0.4 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2830) DUF2892 PF11127.3 gi|330834916|ref|YP_004409644.1| - 0.59 10.0 0.1 0.59 10.0 0.1 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2892) DUF2711 PF10924.3 gi|330834917|ref|YP_004409645.1| - 0.079 12.4 0.1 0.079 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2711) SBP_bac_11 PF13531.1 gi|330834918|ref|YP_004409646.1| - 1.2e-22 80.7 0.6 1.5e-22 80.3 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|330834918|ref|YP_004409646.1| - 1.1e-06 28.6 5.7 2.8e-06 27.2 4.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|330834918|ref|YP_004409646.1| - 1.8e-06 27.9 6.5 8.5e-06 25.6 2.1 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|330834919|ref|YP_004409647.1| - 3.3e-17 62.6 10.7 3.3e-17 62.6 7.4 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Lectin_N PF03954.9 gi|330834919|ref|YP_004409647.1| - 1.6 8.1 4.4 6.6 6.1 0.3 2.5 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain DUF1469 PF07332.6 gi|330834920|ref|YP_004409648.1| - 0.0047 16.6 0.0 0.0054 16.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF202 PF02656.10 gi|330834920|ref|YP_004409648.1| - 0.012 15.7 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF202) 7TMR-DISM_7TM PF07695.6 gi|330834920|ref|YP_004409648.1| - 0.018 14.7 0.2 0.021 14.5 0.1 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling MgtC PF02308.11 gi|330834920|ref|YP_004409648.1| - 0.073 12.9 0.1 0.08 12.7 0.1 1.0 1 0 0 1 1 1 0 MgtC family PrgI PF12666.2 gi|330834920|ref|YP_004409648.1| - 0.077 13.1 0.4 0.095 12.8 0.3 1.1 1 0 0 1 1 1 0 PrgI family protein DUF4013 PF13197.1 gi|330834920|ref|YP_004409648.1| - 0.1 11.9 4.1 0.12 11.7 2.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Sulf_transp PF04143.9 gi|330834921|ref|YP_004409649.1| - 1.6e-06 28.0 4.0 1.6e-06 28.0 2.7 2.8 3 0 0 3 3 3 1 Sulphur transport Transgly_assoc PF04226.8 gi|330834921|ref|YP_004409649.1| - 0.018 15.1 5.0 5.7 7.0 0.0 3.6 4 0 0 4 4 4 0 Transglycosylase associated protein DUF268 PF03269.9 gi|330834921|ref|YP_004409649.1| - 0.095 12.2 0.3 0.15 11.6 0.2 1.2 1 0 0 1 1 1 0 Caenorhabditis protein of unknown function, DUF268 Sulf_transp PF04143.9 gi|330834922|ref|YP_004409650.1| - 3e-05 23.9 9.6 3e-05 23.9 6.6 3.5 4 0 0 4 4 4 1 Sulphur transport Pkinase PF00069.20 gi|330834924|ref|YP_004409652.1| - 2.3e-25 89.2 0.0 3.4e-25 88.6 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|330834924|ref|YP_004409652.1| - 8.5e-08 31.5 0.0 2.4e-07 30.1 0.0 1.8 1 1 0 1 1 1 1 Protein tyrosine kinase DUF1955 PF09205.5 gi|330834924|ref|YP_004409652.1| - 0.0079 15.7 0.2 0.025 14.1 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1955) NosD PF05048.8 gi|330834926|ref|YP_004409654.1| - 1.4e-40 138.9 134.4 1.2e-13 50.7 21.3 4.6 1 1 3 4 4 4 4 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|330834926|ref|YP_004409654.1| - 6.7e-36 123.4 175.6 4e-12 46.1 22.5 4.5 1 1 4 5 5 5 5 Right handed beta helix region DUF3905 PF13045.1 gi|330834926|ref|YP_004409654.1| - 0.022 14.4 0.2 0.1 12.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3905) DUF488 PF04343.8 gi|330834927|ref|YP_004409655.1| - 9.1e-28 97.0 0.1 1.1e-27 96.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF1342 PF07072.6 gi|330834927|ref|YP_004409655.1| - 0.056 13.0 0.0 0.075 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1342) HTH_10 PF04967.7 gi|330834928|ref|YP_004409656.1| - 5.2e-21 73.9 0.2 9.6e-21 73.1 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|330834928|ref|YP_004409656.1| - 6.5e-06 25.3 0.3 1.7e-05 24.0 0.2 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|330834928|ref|YP_004409656.1| - 3.1e-05 23.2 0.2 0.0001 21.6 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_26 PF13443.1 gi|330834928|ref|YP_004409656.1| - 0.0003 20.9 0.8 0.0023 18.0 0.0 2.6 3 0 0 3 3 3 1 Cro/C1-type HTH DNA-binding domain HTH_27 PF13463.1 gi|330834928|ref|YP_004409656.1| - 0.001 19.3 0.5 0.0047 17.2 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|330834928|ref|YP_004409656.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|330834928|ref|YP_004409656.1| - 0.0027 17.6 0.2 0.011 15.6 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|330834928|ref|YP_004409656.1| - 0.0042 16.7 0.0 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.17 gi|330834928|ref|YP_004409656.1| - 0.0044 16.8 0.1 0.013 15.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix GntR PF00392.16 gi|330834928|ref|YP_004409656.1| - 0.0078 15.6 0.0 0.017 14.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_37 PF13744.1 gi|330834928|ref|YP_004409656.1| - 0.0087 15.8 0.0 0.023 14.4 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|330834928|ref|YP_004409656.1| - 0.014 14.8 0.0 0.034 13.6 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|330834928|ref|YP_004409656.1| - 0.022 14.4 0.3 0.093 12.4 0.0 2.1 2 1 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|330834928|ref|YP_004409656.1| - 0.024 14.2 0.5 0.073 12.7 0.0 2.2 2 0 0 2 2 2 0 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|330834928|ref|YP_004409656.1| - 0.057 12.6 0.0 0.099 11.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.1 gi|330834928|ref|YP_004409656.1| - 0.059 13.3 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AraC PF00165.18 gi|330834928|ref|YP_004409656.1| - 0.063 13.1 0.0 0.26 11.1 0.0 2.0 1 1 1 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_DeoR PF08220.7 gi|330834928|ref|YP_004409656.1| - 0.065 12.7 0.0 0.37 10.3 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_18 PF12833.2 gi|330834928|ref|YP_004409656.1| - 0.098 12.7 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|330834928|ref|YP_004409656.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330834928|ref|YP_004409656.1| - 0.13 11.9 0.0 0.33 10.5 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PCI PF01399.22 gi|330834928|ref|YP_004409656.1| - 0.24 11.7 2.3 3.2 8.1 1.6 2.4 1 1 0 1 1 1 0 PCI domain Uso1_p115_head PF04869.9 gi|330834930|ref|YP_004409658.1| - 0.0082 14.9 0.1 0.011 14.5 0.0 1.1 1 0 0 1 1 1 1 Uso1 / p115 like vesicle tethering protein, head region FliG_C PF01706.11 gi|330834930|ref|YP_004409658.1| - 0.014 15.3 2.4 0.028 14.3 0.3 2.0 2 0 0 2 2 2 0 FliG C-terminal domain Pyr_redox_2 PF07992.9 gi|330834931|ref|YP_004409659.1| - 2.7e-10 40.4 0.0 1.3e-09 38.1 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330834931|ref|YP_004409659.1| - 0.00079 18.4 0.0 0.0045 15.9 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|330834931|ref|YP_004409659.1| - 0.0012 18.6 0.0 0.044 13.5 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|330834931|ref|YP_004409659.1| - 0.0061 15.2 0.3 0.013 14.1 0.1 1.5 1 1 0 1 1 1 1 Tryptophan halogenase Pyr_redox PF00070.22 gi|330834931|ref|YP_004409659.1| - 0.0082 16.5 4.7 0.69 10.3 0.3 2.6 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330834931|ref|YP_004409659.1| - 0.0092 15.9 0.1 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.15 gi|330834931|ref|YP_004409659.1| - 0.051 13.6 0.5 0.11 12.6 0.4 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Cuticle_1 PF08140.6 gi|330834931|ref|YP_004409659.1| - 0.063 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 Crustacean cuticle protein repeat K_oxygenase PF13434.1 gi|330834931|ref|YP_004409659.1| - 0.071 12.0 0.0 0.12 11.2 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_7 PF13241.1 gi|330834931|ref|YP_004409659.1| - 0.083 13.1 0.1 0.2 11.9 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding Malic_M PF03949.10 gi|330834931|ref|YP_004409659.1| - 0.095 12.2 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Pyr_redox_3 PF13738.1 gi|330834931|ref|YP_004409659.1| - 0.11 12.5 0.3 0.41 10.6 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TetR_N PF00440.18 gi|330834932|ref|YP_004409660.1| - 2.4e-15 55.8 0.2 3.9e-15 55.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF1464 PF07318.7 gi|330834932|ref|YP_004409660.1| - 0.011 14.5 0.3 0.016 14.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) DUF229 PF02995.12 gi|330834932|ref|YP_004409660.1| - 0.069 11.5 0.0 0.088 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) DUF2249 PF10006.4 gi|330834934|ref|YP_004409662.1| - 4.4e-09 35.7 0.0 4.7e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) NicO PF03824.11 gi|330834936|ref|YP_004409664.1| - 6.2e-80 268.5 13.6 7.5e-80 268.2 9.4 1.1 1 0 0 1 1 1 1 High-affinity nickel-transport protein DUF2231 PF09990.4 gi|330834936|ref|YP_004409664.1| - 1.1 9.5 8.8 0.092 13.0 1.7 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2231) Ole-e-6 PF09253.5 gi|330834939|ref|YP_004409667.1| - 0.0079 15.8 1.3 1.6 8.4 0.1 2.5 1 1 1 2 2 2 2 Pollen allergen ole e 6 DUF1952 PF09189.5 gi|330834939|ref|YP_004409667.1| - 0.018 14.7 0.3 3.1 7.5 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF1952) ComC PF03047.9 gi|330834939|ref|YP_004409667.1| - 0.028 13.8 2.6 6.8 6.2 0.1 3.0 1 1 2 3 3 3 0 COMC family SPT6_acidic PF14632.1 gi|330834942|ref|YP_004409670.1| - 0.044 13.9 0.2 0.053 13.6 0.1 1.1 1 0 0 1 1 1 0 Acidic N-terminal SPT6 Nepo_coat_C PF03688.9 gi|330834946|ref|YP_004409674.1| - 0.14 11.7 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Nepovirus coat protein, C-terminal domain HTH_26 PF13443.1 gi|330834951|ref|YP_004409679.1| - 0.12 12.5 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain DUF2647 PF10839.3 gi|330834956|ref|YP_004409684.1| - 0.047 13.7 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2647) MBOAT PF03062.14 gi|330834960|ref|YP_004409688.1| - 0.013 14.6 3.5 0.015 14.4 2.4 1.0 1 0 0 1 1 1 0 MBOAT, membrane-bound O-acyltransferase family MBOAT_2 PF13813.1 gi|330834960|ref|YP_004409688.1| - 0.14 12.2 1.4 0.17 11.9 1.0 1.1 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family Cas_Cas1 PF01867.11 gi|330834963|ref|YP_004409691.1| - 1.5e-60 204.6 0.0 1.8e-60 204.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|330834964|ref|YP_004409692.1| - 3e-17 62.5 0.0 3.2e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 DUF1829 PF08862.5 gi|330834964|ref|YP_004409692.1| - 0.087 13.1 0.0 0.94 9.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF1829 DUF911 PF06023.7 gi|330834966|ref|YP_004409694.1| - 3e-97 325.3 0.0 3.6e-97 325.0 0.0 1.0 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Cas_Cas4 PF01930.12 gi|330834967|ref|YP_004409695.1| - 1.2e-21 77.2 0.0 1.4e-21 77.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|330834967|ref|YP_004409695.1| - 0.00017 21.0 0.1 0.00027 20.4 0.0 1.4 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Cas_Cas02710 PF09670.5 gi|330834969|ref|YP_004409697.1| - 0.0043 15.7 0.0 0.0056 15.3 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) PIN PF01850.16 gi|330834972|ref|YP_004409700.1| - 0.0043 17.3 0.0 0.0044 17.3 0.0 1.0 1 0 0 1 1 1 1 PIN domain PIN PF01850.16 gi|330834973|ref|YP_004409701.1| - 0.00047 20.4 0.0 0.00051 20.3 0.0 1.0 1 0 0 1 1 1 1 PIN domain DDE_Tnp_IS1 PF03400.8 gi|330834973|ref|YP_004409701.1| - 0.14 12.2 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 IS1 transposase Antitoxin-MazE PF04014.13 gi|330834974|ref|YP_004409702.1| - 1.9e-06 27.4 1.8 4.2e-06 26.3 1.3 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|330834974|ref|YP_004409702.1| - 0.0071 16.0 0.3 0.011 15.4 0.1 1.4 2 0 0 2 2 2 1 MraZ protein DUF3878 PF12994.2 gi|330834974|ref|YP_004409702.1| - 0.08 12.1 0.1 0.091 11.9 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function, E. rectale Gene description (DUF3878) DUF2714 PF10896.3 gi|330834987|ref|YP_004409715.1| - 0.085 12.6 0.4 0.12 12.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2714) Glycos_transf_1 PF00534.15 gi|330834989|ref|YP_004409717.1| - 0.015 14.7 0.0 0.016 14.6 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330834991|ref|YP_004409719.1| - 1.2e-12 48.1 0.1 2.1e-10 40.8 0.0 2.7 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|330834991|ref|YP_004409719.1| - 4.7e-12 45.6 0.0 9.1e-12 44.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330834991|ref|YP_004409719.1| - 0.0024 17.6 0.2 0.033 13.9 0.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|330834991|ref|YP_004409719.1| - 0.011 15.9 0.2 0.046 14.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 AA_permease_2 PF13520.1 gi|330834993|ref|YP_004409721.1| - 3.7e-28 98.2 49.9 4.9e-28 97.8 34.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330834993|ref|YP_004409721.1| - 2e-23 82.4 50.0 3.9e-23 81.5 34.7 1.4 1 1 0 1 1 1 1 Amino acid permease Orbi_VP2 PF00898.12 gi|330834994|ref|YP_004409722.1| - 0.019 12.5 0.0 0.023 12.2 0.0 1.1 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP2 Cas_NE0113 PF09623.5 gi|330834995|ref|YP_004409723.1| - 1.7e-06 27.6 0.0 4.8e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.5 gi|330834995|ref|YP_004409723.1| - 0.0042 15.7 0.0 0.0051 15.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) Pribosyltran_N PF13793.1 gi|330834995|ref|YP_004409723.1| - 0.093 12.4 0.2 0.18 11.5 0.1 1.5 1 1 0 1 1 1 0 N-terminal domain of ribose phosphate pyrophosphokinase RAMPs PF03787.10 gi|330834997|ref|YP_004409725.1| - 5.3e-08 32.9 0.1 1.5e-07 31.4 0.1 1.6 1 1 0 1 1 1 1 RAMP superfamily DUF2120 PF09893.4 gi|330834997|ref|YP_004409725.1| - 0.017 15.0 1.2 0.017 15.0 0.8 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) Smoothelin PF12510.3 gi|330834998|ref|YP_004409726.1| - 0.16 11.8 0.2 0.4 10.5 0.2 1.7 1 0 0 1 1 1 0 Smoothelin cytoskeleton protein RAMPs PF03787.10 gi|330834999|ref|YP_004409727.1| - 1.8e-11 44.2 0.0 4.3e-11 43.0 0.0 1.6 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.5 gi|330834999|ref|YP_004409727.1| - 0.0019 17.7 0.0 0.028 13.8 0.0 2.0 2 0 0 2 2 2 1 CRISPR-associated protein (Cas_Cmr3) HD PF01966.17 gi|330835000|ref|YP_004409728.1| - 0.00096 19.1 0.6 0.0031 17.5 0.2 2.1 2 0 0 2 2 2 1 HD domain DUF3692 PF12469.3 gi|330835000|ref|YP_004409728.1| - 0.069 13.3 0.8 0.93 9.7 0.0 3.0 3 0 0 3 3 3 0 CRISPR-associated protein UL11 PF11094.3 gi|330835001|ref|YP_004409729.1| - 0.016 14.9 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 Membrane-associated tegument protein RAMPs PF03787.10 gi|330835002|ref|YP_004409730.1| - 1.8e-06 27.9 1.3 2.8e-06 27.3 0.9 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|330835004|ref|YP_004409732.1| - 6e-30 104.6 0.0 1.2e-29 103.6 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.10 gi|330835005|ref|YP_004409733.1| - 4.4e-22 78.9 0.5 6.8e-22 78.3 0.3 1.3 1 0 0 1 1 1 1 RAMP superfamily REV PF00424.13 gi|330835006|ref|YP_004409734.1| - 0.047 13.5 3.4 1.4 8.8 0.1 2.6 1 1 0 2 2 2 0 REV protein (anti-repression trans-activator protein) Hid1 PF12722.2 gi|330835006|ref|YP_004409734.1| - 0.71 7.4 9.0 0.88 7.1 6.2 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein DUF2201_N PF13203.1 gi|330835006|ref|YP_004409734.1| - 1.2 8.2 10.4 1.7 7.7 7.2 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain Neur_chan_memb PF02932.11 gi|330835006|ref|YP_004409734.1| - 1.6 8.5 5.3 2 8.2 3.7 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region Presenilin PF01080.12 gi|330835006|ref|YP_004409734.1| - 9.8 4.8 7.3 12 4.6 5.0 1.1 1 0 0 1 1 1 0 Presenilin Vfa1 PF08432.5 gi|330835006|ref|YP_004409734.1| - 9.8 6.1 11.7 14 5.6 8.1 1.3 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 PBS_linker_poly PF00427.16 gi|330835007|ref|YP_004409735.1| - 0.048 13.3 0.0 0.06 13.0 0.0 1.1 1 0 0 1 1 1 0 Phycobilisome Linker polypeptide DUF2276 PF10040.4 gi|330835009|ref|YP_004409737.1| - 9.2e-21 74.2 0.0 1.5e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) HTH_24 PF13412.1 gi|330835010|ref|YP_004409738.1| - 2e-10 39.9 0.1 4.7e-10 38.6 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330835010|ref|YP_004409738.1| - 2.2e-05 23.8 0.1 6.5e-05 22.3 0.0 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|330835010|ref|YP_004409738.1| - 0.00035 20.2 0.1 0.00066 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|330835010|ref|YP_004409738.1| - 0.0011 18.6 0.2 0.0026 17.3 0.1 1.7 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|330835010|ref|YP_004409738.1| - 0.0033 17.1 0.1 0.0067 16.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.15 gi|330835010|ref|YP_004409738.1| - 0.0039 16.8 0.0 0.0093 15.6 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|330835010|ref|YP_004409738.1| - 0.004 16.8 0.0 0.0091 15.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|330835010|ref|YP_004409738.1| - 0.005 16.7 0.1 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Fe_dep_repress PF01325.14 gi|330835010|ref|YP_004409738.1| - 0.0079 16.1 0.0 0.052 13.4 0.0 2.3 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|330835010|ref|YP_004409738.1| - 0.014 15.6 0.1 0.046 14.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|330835010|ref|YP_004409738.1| - 0.016 15.2 0.0 0.03 14.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|330835010|ref|YP_004409738.1| - 0.033 13.8 0.0 0.065 12.9 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|330835010|ref|YP_004409738.1| - 0.043 13.3 0.0 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain HemN_C PF06969.11 gi|330835010|ref|YP_004409738.1| - 0.049 13.6 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 0 HemN C-terminal domain HTH_20 PF12840.2 gi|330835010|ref|YP_004409738.1| - 0.1 12.4 0.0 0.24 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain UBA_2 PF08587.6 gi|330835010|ref|YP_004409738.1| - 0.13 12.4 0.3 1 9.6 0.0 2.5 3 0 0 3 3 3 0 Ubiquitin associated domain (UBA) Cas_Csa5 PF09702.5 gi|330835011|ref|YP_004409739.1| - 2.3e-33 114.4 0.1 2.8e-33 114.1 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) DevR PF01905.11 gi|330835012|ref|YP_004409740.1| - 4.7e-75 251.8 0.0 5.6e-75 251.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|330835013|ref|YP_004409741.1| - 4.7e-14 52.5 0.1 6.5e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|330835014|ref|YP_004409742.1| - 6.4e-13 48.5 0.0 1.6e-11 44.0 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330835014|ref|YP_004409742.1| - 5e-07 29.4 0.1 1.9e-05 24.4 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain IstB_IS21 PF01695.12 gi|330835014|ref|YP_004409742.1| - 0.0002 20.8 0.0 0.00047 19.6 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein ResIII PF04851.10 gi|330835014|ref|YP_004409742.1| - 0.00025 20.9 0.0 0.0008 19.2 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|330835014|ref|YP_004409742.1| - 0.0005 19.3 0.1 0.0014 17.8 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein AAA_25 PF13481.1 gi|330835014|ref|YP_004409742.1| - 0.0017 17.7 0.0 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF3343 PF11823.3 gi|330835014|ref|YP_004409742.1| - 0.002 17.3 0.2 0.014 14.6 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF3343) AAA_19 PF13245.1 gi|330835014|ref|YP_004409742.1| - 0.0088 15.7 0.0 0.017 14.8 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Hydrolase_6 PF13344.1 gi|330835014|ref|YP_004409742.1| - 0.016 15.1 0.0 0.87 9.5 0.0 2.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Guanylate_kin PF00625.16 gi|330835014|ref|YP_004409742.1| - 0.016 14.6 0.2 2.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Guanylate kinase AAA_22 PF13401.1 gi|330835014|ref|YP_004409742.1| - 0.053 13.6 0.0 0.74 9.9 0.0 2.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|330835014|ref|YP_004409742.1| - 0.093 12.9 0.0 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|330835014|ref|YP_004409742.1| - 0.14 12.4 0.1 0.76 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain HD PF01966.17 gi|330835015|ref|YP_004409743.1| - 0.0017 18.3 0.0 0.003 17.5 0.0 1.5 1 0 0 1 1 1 1 HD domain DUF1434 PF07254.7 gi|330835015|ref|YP_004409743.1| - 0.062 13.1 0.1 0.21 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1434) NurA PF09376.5 gi|330835017|ref|YP_004409745.1| - 1.6e-10 40.9 0.2 2.7e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|330835018|ref|YP_004409746.1| - 9.2e-19 67.9 0.4 2.4e-17 63.3 0.2 2.2 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|330835018|ref|YP_004409746.1| - 2.3e-10 40.6 0.2 7.1e-10 39.0 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|330835018|ref|YP_004409746.1| - 9.6e-10 37.4 0.0 0.00073 18.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|330835018|ref|YP_004409746.1| - 2.8e-08 33.5 0.9 0.0055 16.2 0.1 2.8 2 1 0 2 2 2 2 FtsK/SpoIIIE family AAA PF00004.24 gi|330835018|ref|YP_004409746.1| - 3.3e-06 27.3 0.2 0.014 15.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.4 gi|330835018|ref|YP_004409746.1| - 0.00021 20.0 0.0 0.00037 19.2 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain NACHT PF05729.7 gi|330835018|ref|YP_004409746.1| - 0.00022 20.9 0.0 0.67 9.6 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|330835018|ref|YP_004409746.1| - 0.00027 21.0 0.0 0.18 11.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain Zot PF05707.7 gi|330835018|ref|YP_004409746.1| - 0.0041 16.6 0.0 0.031 13.7 0.0 2.3 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) DEAD PF00270.24 gi|330835018|ref|YP_004409746.1| - 0.0049 16.3 0.0 3.5 7.0 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|330835018|ref|YP_004409746.1| - 0.0056 16.5 0.0 3 7.6 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|330835018|ref|YP_004409746.1| - 0.0066 15.5 0.0 0.023 13.8 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin ABC_tran PF00005.22 gi|330835018|ref|YP_004409746.1| - 0.01 16.1 0.0 0.045 14.0 0.0 2.1 2 0 0 2 2 2 1 ABC transporter AAA_25 PF13481.1 gi|330835018|ref|YP_004409746.1| - 0.036 13.4 0.0 5.2 6.4 0.0 2.4 2 0 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|330835018|ref|YP_004409746.1| - 0.037 13.7 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 Archaeal ATPase T2SE PF00437.15 gi|330835018|ref|YP_004409746.1| - 0.056 12.3 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|330835018|ref|YP_004409746.1| - 0.11 12.4 0.0 2.8 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|330835018|ref|YP_004409746.1| - 0.13 12.6 0.0 3.4 7.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|330835018|ref|YP_004409746.1| - 0.13 11.1 0.0 5.3 5.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) DUF3584 PF12128.3 gi|330835018|ref|YP_004409746.1| - 0.14 9.4 0.6 0.21 8.8 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) PIN_4 PF13638.1 gi|330835019|ref|YP_004409747.1| - 0.028 14.5 0.0 0.068 13.2 0.0 1.7 1 1 0 1 1 1 0 PIN domain GATase_6 PF13522.1 gi|330835020|ref|YP_004409748.1| - 3.4e-07 30.2 0.0 4.7e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|330835020|ref|YP_004409748.1| - 0.00017 20.3 0.0 0.00023 19.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II CbiQ PF02361.11 gi|330835021|ref|YP_004409749.1| - 3.7e-11 43.0 17.2 8.6e-11 41.8 11.9 1.6 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|330835022|ref|YP_004409750.1| - 1.3e-45 155.0 0.0 2.2e-21 76.5 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|330835022|ref|YP_004409750.1| - 4.8e-20 72.7 3.2 2.6e-06 27.6 0.0 4.1 3 1 1 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|330835022|ref|YP_004409750.1| - 5.1e-12 45.1 0.1 0.00013 21.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330835022|ref|YP_004409750.1| - 4.9e-09 35.7 0.6 0.0012 18.1 0.0 4.1 2 2 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|330835022|ref|YP_004409750.1| - 8.4e-09 35.6 0.0 0.00026 21.0 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|330835022|ref|YP_004409750.1| - 1.1e-08 34.4 0.8 0.0019 17.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|330835022|ref|YP_004409750.1| - 1.3e-08 35.4 0.0 1.4e-05 25.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|330835022|ref|YP_004409750.1| - 2.6e-07 30.3 0.3 0.013 14.9 0.0 3.2 4 0 0 4 4 3 2 AAA-like domain T2SE PF00437.15 gi|330835022|ref|YP_004409750.1| - 7.2e-07 28.3 0.5 0.03 13.2 0.1 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein MMR_HSR1 PF01926.18 gi|330835022|ref|YP_004409750.1| - 3.6e-06 26.9 0.0 0.11 12.4 0.0 3.1 3 1 1 4 4 3 2 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|330835022|ref|YP_004409750.1| - 4.2e-06 26.4 0.0 0.35 10.6 0.0 3.3 3 0 0 3 3 3 2 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|330835022|ref|YP_004409750.1| - 4.4e-06 26.3 1.8 0.0054 16.2 0.0 2.9 2 1 1 3 3 3 2 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|330835022|ref|YP_004409750.1| - 5.1e-06 26.6 0.2 0.058 13.5 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.1 gi|330835022|ref|YP_004409750.1| - 5.9e-06 26.0 0.1 0.056 13.0 0.0 2.6 3 0 0 3 3 2 2 AAA domain NACHT PF05729.7 gi|330835022|ref|YP_004409750.1| - 6.4e-06 25.9 1.2 0.016 14.8 0.1 2.5 2 0 0 2 2 2 2 NACHT domain MobB PF03205.9 gi|330835022|ref|YP_004409750.1| - 1.3e-05 24.8 0.6 0.027 14.1 0.1 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|330835022|ref|YP_004409750.1| - 1.4e-05 25.8 0.2 0.36 11.6 0.0 2.9 3 1 0 3 3 2 2 AAA domain Miro PF08477.8 gi|330835022|ref|YP_004409750.1| - 1.4e-05 25.5 0.0 0.14 12.6 0.0 2.5 2 0 0 2 2 2 2 Miro-like protein SbcCD_C PF13558.1 gi|330835022|ref|YP_004409750.1| - 1.5e-05 24.8 0.0 0.014 15.2 0.1 3.4 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit PduV-EutP PF10662.4 gi|330835022|ref|YP_004409750.1| - 2.3e-05 23.9 0.1 0.058 12.8 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.1 gi|330835022|ref|YP_004409750.1| - 2.7e-05 23.4 0.0 0.0018 17.3 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain Mg_chelatase PF01078.16 gi|330835022|ref|YP_004409750.1| - 3.3e-05 23.1 0.1 0.037 13.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|330835022|ref|YP_004409750.1| - 3.9e-05 23.2 0.2 0.0027 17.3 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|330835022|ref|YP_004409750.1| - 4.1e-05 23.4 0.2 0.25 11.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|330835022|ref|YP_004409750.1| - 4.5e-05 22.4 0.1 0.005 15.7 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain ABC_ATPase PF09818.4 gi|330835022|ref|YP_004409750.1| - 5.4e-05 21.9 0.1 1.8 7.0 0.0 3.8 4 0 0 4 4 4 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|330835022|ref|YP_004409750.1| - 6.1e-05 22.8 0.0 0.056 13.1 0.0 2.3 2 0 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|330835022|ref|YP_004409750.1| - 0.00012 22.3 0.1 1.7 8.9 0.0 3.3 3 0 0 3 3 3 1 AAA domain ATP_bind_1 PF03029.12 gi|330835022|ref|YP_004409750.1| - 0.00034 20.2 0.2 1.7 8.0 0.0 3.0 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein Pox_A32 PF04665.7 gi|330835022|ref|YP_004409750.1| - 0.00034 19.9 0.1 0.0082 15.4 0.0 2.3 2 0 0 2 2 2 1 Poxvirus A32 protein cobW PF02492.14 gi|330835022|ref|YP_004409750.1| - 0.00037 19.9 0.3 0.099 12.0 0.1 2.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|330835022|ref|YP_004409750.1| - 0.00037 19.9 0.0 0.79 9.0 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330835022|ref|YP_004409750.1| - 0.00051 20.2 0.1 0.05 13.8 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|330835022|ref|YP_004409750.1| - 0.00067 19.5 0.4 0.027 14.2 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_24 PF13479.1 gi|330835022|ref|YP_004409750.1| - 0.00081 19.0 0.1 1.3 8.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|330835022|ref|YP_004409750.1| - 0.00082 19.1 0.8 1.9 8.1 0.0 3.0 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.7 gi|330835022|ref|YP_004409750.1| - 0.00094 18.3 0.1 0.098 11.7 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin RNA_helicase PF00910.17 gi|330835022|ref|YP_004409750.1| - 0.0018 18.4 0.1 2 8.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase DUF815 PF05673.8 gi|330835022|ref|YP_004409750.1| - 0.0019 17.2 0.0 1 8.2 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) G-alpha PF00503.15 gi|330835022|ref|YP_004409750.1| - 0.002 16.8 0.0 0.9 8.1 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit NTPase_1 PF03266.10 gi|330835022|ref|YP_004409750.1| - 0.003 17.2 0.8 0.72 9.5 0.0 2.9 3 0 0 3 3 2 1 NTPase KaiC PF06745.8 gi|330835022|ref|YP_004409750.1| - 0.0039 16.3 1.1 2.3 7.2 0.0 3.3 3 0 0 3 3 3 1 KaiC DLIC PF05783.6 gi|330835022|ref|YP_004409750.1| - 0.0055 15.4 0.1 0.72 8.4 0.0 2.1 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) AAA_28 PF13521.1 gi|330835022|ref|YP_004409750.1| - 0.0066 16.4 0.1 1.5 8.7 0.0 2.6 2 0 0 2 2 2 1 AAA domain PPK2 PF03976.9 gi|330835022|ref|YP_004409750.1| - 0.0068 15.7 0.0 0.012 14.9 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Septin PF00735.13 gi|330835022|ref|YP_004409750.1| - 0.012 14.6 0.3 0.52 9.2 0.1 2.2 2 0 0 2 2 2 0 Septin Gtr1_RagA PF04670.7 gi|330835022|ref|YP_004409750.1| - 0.013 14.6 0.6 3 6.9 0.0 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region CPT PF07931.7 gi|330835022|ref|YP_004409750.1| - 0.014 15.0 0.2 2.9 7.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_14 PF13173.1 gi|330835022|ref|YP_004409750.1| - 0.019 14.8 0.3 1.4 8.8 0.1 3.2 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|330835022|ref|YP_004409750.1| - 0.023 14.1 0.1 6.1 6.2 0.0 2.7 3 0 0 3 3 2 0 IstB-like ATP binding protein FeoB_N PF02421.13 gi|330835022|ref|YP_004409750.1| - 0.024 13.8 0.3 5 6.3 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|330835022|ref|YP_004409750.1| - 0.027 14.3 3.4 2.4 7.9 0.3 2.5 2 0 0 2 2 2 0 Dynamin family PIF1 PF05970.9 gi|330835022|ref|YP_004409750.1| - 0.036 12.9 0.0 2.9 6.7 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase Sigma54_activat PF00158.21 gi|330835022|ref|YP_004409750.1| - 0.04 13.4 0.1 1.4 8.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain PRK PF00485.13 gi|330835022|ref|YP_004409750.1| - 0.048 13.2 0.0 3.3 7.2 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family PhoH PF02562.11 gi|330835022|ref|YP_004409750.1| - 0.056 12.6 0.0 3.7 6.7 0.0 2.7 3 0 0 3 3 2 0 PhoH-like protein DUF3584 PF12128.3 gi|330835022|ref|YP_004409750.1| - 0.087 10.1 0.1 0.15 9.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_13 PF13166.1 gi|330835022|ref|YP_004409750.1| - 0.11 10.9 0.0 3 6.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain IIGP PF05049.8 gi|330835022|ref|YP_004409750.1| - 0.12 11.1 0.6 0.63 8.7 0.0 2.0 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) CbiA PF01656.18 gi|330835022|ref|YP_004409750.1| - 0.14 11.5 2.4 3.6 6.9 0.1 2.4 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain KAP_NTPase PF07693.9 gi|330835022|ref|YP_004409750.1| - 0.15 11.0 0.0 6.1 5.7 0.0 2.1 2 0 0 2 2 2 0 KAP family P-loop domain GTP_EFTU PF00009.22 gi|330835022|ref|YP_004409750.1| - 0.15 11.4 0.2 4.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain SRP54 PF00448.17 gi|330835022|ref|YP_004409750.1| - 0.28 10.5 1.5 1.7 8.0 0.1 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AIG1 PF04548.11 gi|330835022|ref|YP_004409750.1| - 0.46 9.5 2.9 2.3 7.2 0.2 2.5 2 1 0 2 2 2 0 AIG1 family Pyr_redox_2 PF07992.9 gi|330835024|ref|YP_004409752.1| - 3.4e-31 108.7 0.4 5.6e-31 107.9 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835024|ref|YP_004409752.1| - 1.8e-14 53.8 2.5 1.8e-13 50.6 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330835024|ref|YP_004409752.1| - 6.8e-13 49.1 0.1 1.6e-09 38.1 0.1 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330835024|ref|YP_004409752.1| - 4.2e-10 39.6 0.1 2.1e-09 37.3 0.0 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.17 gi|330835024|ref|YP_004409752.1| - 7.1e-09 35.0 5.3 8.8e-05 21.5 0.3 3.5 3 1 0 3 3 3 3 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|330835024|ref|YP_004409752.1| - 4.9e-07 28.9 1.3 1.7e-05 23.8 0.2 3.0 3 0 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.1 gi|330835024|ref|YP_004409752.1| - 7.5e-07 28.3 0.0 0.00087 18.3 0.0 2.4 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.2 gi|330835024|ref|YP_004409752.1| - 1e-05 24.8 0.7 1.9e-05 23.9 0.0 1.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|330835024|ref|YP_004409752.1| - 1.8e-05 23.8 0.1 0.00014 20.9 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.12 gi|330835024|ref|YP_004409752.1| - 4.2e-05 22.7 0.8 0.0031 16.6 0.1 2.4 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|330835024|ref|YP_004409752.1| - 0.00084 17.9 1.1 0.0093 14.4 0.2 2.7 3 0 0 3 3 3 1 HI0933-like protein 3HCDH_N PF02737.13 gi|330835024|ref|YP_004409752.1| - 0.00089 18.9 0.1 0.4 10.3 0.0 2.3 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|330835024|ref|YP_004409752.1| - 0.0042 17.0 0.3 0.0042 17.0 0.2 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|330835024|ref|YP_004409752.1| - 0.016 14.1 7.5 0.039 12.8 0.2 2.9 3 0 0 3 3 3 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|330835024|ref|YP_004409752.1| - 0.043 14.0 0.5 13 6.0 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.14 gi|330835024|ref|YP_004409752.1| - 0.17 10.9 4.0 1.3 8.0 0.1 2.8 3 0 0 3 3 3 0 FAD binding domain ThiF PF00899.16 gi|330835024|ref|YP_004409752.1| - 0.22 11.3 2.5 1.6 8.5 0.1 2.6 2 0 0 2 2 2 0 ThiF family Usp PF00582.21 gi|330835025|ref|YP_004409753.1| - 5.7e-24 84.8 1.3 6.3e-24 84.7 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family Y_Y_Y PF07495.8 gi|330835025|ref|YP_004409753.1| - 0.063 13.0 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 Y_Y_Y domain BCA_ABC_TP_C PF12399.3 gi|330835025|ref|YP_004409753.1| - 2.4 7.9 5.5 2.1 8.0 0.2 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AMP-binding PF00501.23 gi|330835026|ref|YP_004409754.1| - 3.5e-76 256.2 0.0 4.3e-76 255.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330835026|ref|YP_004409754.1| - 1.6e-20 73.7 0.2 2.9e-20 72.9 0.1 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Diphthamide_syn PF01866.12 gi|330835026|ref|YP_004409754.1| - 0.047 12.9 0.0 0.078 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative diphthamide synthesis protein Condensation PF00668.15 gi|330835026|ref|YP_004409754.1| - 0.092 11.5 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Condensation domain HTH_5 PF01022.15 gi|330835027|ref|YP_004409755.1| - 4.4e-16 58.2 5.7 4.4e-16 58.2 1.8 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330835027|ref|YP_004409755.1| - 7.4e-07 28.8 0.9 9.7e-07 28.5 0.2 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|330835027|ref|YP_004409755.1| - 9.9e-06 25.4 0.4 1.9e-05 24.6 0.2 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|330835027|ref|YP_004409755.1| - 5.2e-05 22.8 0.1 9.3e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|330835027|ref|YP_004409755.1| - 0.00051 19.5 0.1 0.00091 18.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|330835027|ref|YP_004409755.1| - 0.0093 16.0 0.1 0.016 15.3 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator HTH_Tnp_Tc3_1 PF11427.3 gi|330835027|ref|YP_004409755.1| - 0.011 15.3 0.8 0.021 14.4 0.5 1.5 1 0 0 1 1 1 0 Tc3 transposase HTH_23 PF13384.1 gi|330835027|ref|YP_004409755.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Trp_repressor PF01371.14 gi|330835027|ref|YP_004409755.1| - 0.016 15.0 0.2 0.49 10.3 0.1 2.2 1 1 1 2 2 2 0 Trp repressor protein STN1_2 PF09170.5 gi|330835027|ref|YP_004409755.1| - 0.018 14.7 0.5 0.028 14.1 0.4 1.5 1 1 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Phage_rep_org_N PF09681.5 gi|330835027|ref|YP_004409755.1| - 0.036 13.6 0.1 0.05 13.1 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Penicillinase_R PF03965.11 gi|330835027|ref|YP_004409755.1| - 0.041 13.9 0.2 0.058 13.4 0.1 1.3 1 1 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.11 gi|330835027|ref|YP_004409755.1| - 0.042 13.3 0.0 0.09 12.3 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.1 gi|330835027|ref|YP_004409755.1| - 0.13 12.3 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Macro PF01661.16 gi|330835029|ref|YP_004409757.1| - 5.8e-38 129.4 0.0 7.1e-38 129.1 0.0 1.1 1 0 0 1 1 1 1 Macro domain DUF3197 PF11432.3 gi|330835029|ref|YP_004409757.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) Phosphoesterase PF04185.9 gi|330835030|ref|YP_004409758.1| - 3.1e-68 230.6 1.2 3.9e-68 230.3 0.8 1.1 1 0 0 1 1 1 1 Phosphoesterase family BacA PF02673.13 gi|330835031|ref|YP_004409759.1| - 5.9e-50 169.8 20.1 6.8e-50 169.6 14.0 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF4029 PF13221.1 gi|330835031|ref|YP_004409759.1| - 6.9 7.1 8.4 13 6.2 0.3 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4029) Tom22 PF04281.8 gi|330835031|ref|YP_004409759.1| - 8.3 5.9 6.4 2.4 7.6 0.1 2.7 3 0 0 3 3 3 0 Mitochondrial import receptor subunit Tom22 Linocin_M18 PF04454.7 gi|330835032|ref|YP_004409760.1| - 9.9e-32 109.8 0.1 1.4e-31 109.3 0.1 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase T2SJ PF11612.3 gi|330835032|ref|YP_004409760.1| - 0.066 12.9 0.0 0.16 11.6 0.0 1.7 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein J IF-2B PF01008.12 gi|330835033|ref|YP_004409761.1| - 1.5e-74 250.5 0.0 1.8e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ProRS-C_2 PF09181.5 gi|330835033|ref|YP_004409761.1| - 0.083 12.8 0.8 22 5.0 0.0 3.1 2 1 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal RRM_6 PF14259.1 gi|330835033|ref|YP_004409761.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) Na_H_Exchanger PF00999.16 gi|330835034|ref|YP_004409762.1| - 3e-45 154.3 49.9 3.7e-45 154.0 34.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MS_channel PF00924.13 gi|330835035|ref|YP_004409763.1| - 3.7e-41 140.7 6.9 3.7e-41 140.7 4.8 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsX PF02687.16 gi|330835035|ref|YP_004409763.1| - 0.06 13.1 10.1 0.13 12.0 1.7 2.2 1 1 1 2 2 2 0 FtsX-like permease family Tetraspannin PF00335.15 gi|330835035|ref|YP_004409763.1| - 1.7 7.9 4.8 3.6 6.8 3.3 1.6 1 1 0 1 1 1 0 Tetraspanin family DUF432 PF04254.8 gi|330835036|ref|YP_004409764.1| - 3.1e-29 101.3 0.2 4e-29 101.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Peptidase_M48 PF01435.13 gi|330835037|ref|YP_004409765.1| - 0.00016 21.3 0.0 0.00016 21.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M48 PF01435.13 gi|330835038|ref|YP_004409766.1| - 1.3e-10 41.2 0.1 1.8e-10 40.7 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Zn_peptidase_2 PF04298.7 gi|330835038|ref|YP_004409766.1| - 0.16 11.3 2.6 0.23 10.7 1.8 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase MFS_1 PF07690.11 gi|330835039|ref|YP_004409767.1| - 2.1e-23 82.6 30.1 2.1e-23 82.6 20.8 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835039|ref|YP_004409767.1| - 1.1e-17 63.7 29.7 5.5e-17 61.4 20.6 1.8 1 1 0 1 1 1 1 Sugar (and other) transporter DUF35_N PF12172.3 gi|330835040|ref|YP_004409768.1| - 5.1e-07 29.4 1.6 7.8e-07 28.8 1.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|330835040|ref|YP_004409768.1| - 4.2e-05 23.6 1.1 0.00055 20.1 0.8 2.1 1 1 0 1 1 1 1 DUF35 OB-fold domain FdhE PF04216.7 gi|330835040|ref|YP_004409768.1| - 0.002 17.9 0.6 0.0026 17.5 0.4 1.1 1 0 0 1 1 1 1 Protein involved in formate dehydrogenase formation Spt4 PF06093.8 gi|330835040|ref|YP_004409768.1| - 0.024 14.5 0.1 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Sgf11 PF08209.6 gi|330835040|ref|YP_004409768.1| - 0.042 13.1 4.8 0.076 12.3 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HypA PF01155.14 gi|330835040|ref|YP_004409768.1| - 0.044 13.4 0.1 0.063 12.9 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|330835040|ref|YP_004409768.1| - 0.13 11.5 3.6 0.39 10.0 0.2 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding Thiolase_C PF02803.13 gi|330835041|ref|YP_004409769.1| - 0.00013 21.3 0.1 0.00097 18.5 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|330835041|ref|YP_004409769.1| - 0.083 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III adh_short PF00106.20 gi|330835042|ref|YP_004409770.1| - 1.4e-34 119.4 0.0 1.8e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|330835042|ref|YP_004409770.1| - 8.8e-28 97.6 0.0 1e-27 97.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|330835042|ref|YP_004409770.1| - 1e-15 57.8 0.0 1.4e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|330835042|ref|YP_004409770.1| - 6.6e-06 25.7 0.1 9.6e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family PolyA_pol PF01743.15 gi|330835042|ref|YP_004409770.1| - 0.0032 17.6 0.0 0.014 15.5 0.0 2.1 1 1 0 1 1 1 1 Poly A polymerase head domain IU_nuc_hydro PF01156.14 gi|330835043|ref|YP_004409771.1| - 5.1e-77 259.1 0.0 5.6e-77 259.0 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Rieske PF00355.21 gi|330835044|ref|YP_004409772.1| - 6.7e-13 48.0 0.0 7.3e-13 47.9 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|330835044|ref|YP_004409772.1| - 4.3e-10 39.2 0.0 5e-10 39.0 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain PQQ_3 PF13570.1 gi|330835044|ref|YP_004409772.1| - 0.031 14.5 0.0 0.053 13.8 0.0 1.5 1 0 0 1 1 1 0 PQQ-like domain MFS_1 PF07690.11 gi|330835045|ref|YP_004409773.1| - 5.7e-40 137.1 41.9 5.7e-40 137.1 29.0 2.6 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835045|ref|YP_004409773.1| - 7.7e-09 34.6 8.2 7.7e-09 34.6 5.7 2.8 1 1 0 2 2 2 1 Sugar (and other) transporter OATP PF03137.15 gi|330835045|ref|YP_004409773.1| - 1.6e-06 26.4 10.0 0.0016 16.6 0.3 3.4 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family DUF543 PF04418.7 gi|330835045|ref|YP_004409773.1| - 0.28 11.1 1.6 1 9.3 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF543) UPF0233 PF06781.7 gi|330835045|ref|YP_004409773.1| - 6.6 6.4 9.0 23 4.6 1.1 3.4 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0233) DUF973 PF06157.6 gi|330835046|ref|YP_004409774.1| - 2.8e-42 144.6 18.6 7e-34 117.0 3.5 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF973) Yip1 PF04893.12 gi|330835046|ref|YP_004409774.1| - 0.024 14.1 14.7 0.04 13.4 10.2 1.3 1 0 0 1 1 1 0 Yip1 domain POR PF01558.13 gi|330835046|ref|YP_004409774.1| - 0.026 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase DUF996 PF06195.8 gi|330835046|ref|YP_004409774.1| - 0.06 13.3 10.7 3.5 7.6 0.1 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF996) HpaB_N PF11794.3 gi|330835047|ref|YP_004409775.1| - 6.9e-66 222.3 0.0 1.1e-65 221.6 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.8 gi|330835047|ref|YP_004409775.1| - 2e-52 177.0 0.0 3.1e-52 176.4 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal PAS_3 PF08447.6 gi|330835047|ref|YP_004409775.1| - 0.088 12.9 0.1 0.25 11.4 0.1 1.7 1 0 0 1 1 1 0 PAS fold Glyoxalase PF00903.20 gi|330835048|ref|YP_004409776.1| - 1.5e-19 70.2 0.2 2.6e-09 37.1 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|330835048|ref|YP_004409776.1| - 1.9e-11 44.4 0.1 1.4e-05 25.6 0.0 2.5 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|330835048|ref|YP_004409776.1| - 5.9e-08 32.6 0.1 0.0019 18.1 0.1 3.4 2 2 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|330835048|ref|YP_004409776.1| - 0.013 15.4 0.4 1.5 8.7 0.0 2.5 2 1 0 2 2 2 0 Glyoxalase-like domain CppA_N PF14506.1 gi|330835048|ref|YP_004409776.1| - 0.015 15.0 0.1 0.037 13.6 0.0 1.7 2 0 0 2 2 2 0 CppA N-terminal Flavin_Reduct PF01613.13 gi|330835049|ref|YP_004409777.1| - 1.6e-26 92.9 0.0 1.8e-26 92.8 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Sugar_tr PF00083.19 gi|330835050|ref|YP_004409778.1| - 7.6e-44 150.0 16.7 1.2e-43 149.4 11.6 1.3 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330835050|ref|YP_004409778.1| - 2.1e-26 92.4 59.0 8.1e-19 67.5 17.9 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.15 gi|330835050|ref|YP_004409778.1| - 0.0001 20.5 9.2 0.00025 19.2 1.2 2.5 2 1 0 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family DUF1228 PF06779.9 gi|330835050|ref|YP_004409778.1| - 0.18 11.8 11.2 0.18 11.8 0.2 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF1228) DUF485 PF04341.7 gi|330835050|ref|YP_004409778.1| - 0.2 11.3 6.4 1.1 8.9 0.3 3.4 2 0 0 2 2 2 0 Protein of unknown function, DUF485 DUF3938 PF13074.1 gi|330835050|ref|YP_004409778.1| - 0.21 11.4 3.2 1.2 9.0 0.2 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3938) HTH_10 PF04967.7 gi|330835051|ref|YP_004409779.1| - 1.2e-18 66.4 0.0 2.5e-18 65.3 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.1 gi|330835051|ref|YP_004409779.1| - 0.071 12.8 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase TetR_N PF00440.18 gi|330835051|ref|YP_004409779.1| - 0.073 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family ADC PF06314.6 gi|330835052|ref|YP_004409780.1| - 3.4e-52 177.1 0.1 4.1e-52 176.8 0.0 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Glyco_hydro_15 PF00723.16 gi|330835053|ref|YP_004409781.1| - 1.6e-47 162.1 0.1 2.9e-45 154.6 0.1 2.6 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.1 gi|330835053|ref|YP_004409781.1| - 0.00064 20.0 2.3 0.009 16.3 0.0 3.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_4 PF07721.9 gi|330835053|ref|YP_004409781.1| - 0.071 13.5 0.5 13 6.5 0.0 3.3 2 0 0 2 2 2 0 Tetratricopeptide repeat Imm39 PF15600.1 gi|330835054|ref|YP_004409782.1| - 0.067 13.0 0.2 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Immunity protein 39 CbiA PF01656.18 gi|330835054|ref|YP_004409782.1| - 0.096 12.0 0.0 0.67 9.3 0.0 2.0 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Amidohydro_2 PF04909.9 gi|330835056|ref|YP_004409784.1| - 9.9e-41 140.0 0.0 1.2e-40 139.8 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase His_Phos_1 PF00300.17 gi|330835057|ref|YP_004409785.1| - 6.8e-17 61.9 0.0 8.8e-16 58.3 0.0 2.0 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) Ppx-GppA PF02541.11 gi|330835058|ref|YP_004409786.1| - 1.1e-37 129.8 0.0 1.5e-37 129.3 0.0 1.1 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HHH_8 PF14716.1 gi|330835058|ref|YP_004409786.1| - 0.0071 16.5 0.0 0.017 15.3 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain FtsA PF14450.1 gi|330835058|ref|YP_004409786.1| - 0.063 13.1 0.0 1.3 8.8 0.0 2.7 3 1 0 3 3 3 0 Cell division protein FtsA Thymidylate_kin PF02223.12 gi|330835059|ref|YP_004409787.1| - 8.3e-26 90.5 0.0 1.6e-25 89.5 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|330835059|ref|YP_004409787.1| - 0.00011 22.4 0.0 0.00038 20.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330835059|ref|YP_004409787.1| - 0.016 15.0 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|330835059|ref|YP_004409787.1| - 0.018 15.8 0.1 0.27 12.0 0.0 2.3 1 1 1 2 2 2 0 AAA domain DUF3699 PF12480.3 gi|330835059|ref|YP_004409787.1| - 0.12 11.9 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3699) Thymidylate_kin PF02223.12 gi|330835060|ref|YP_004409788.1| - 1.1e-10 41.1 0.0 2.6e-10 40.0 0.0 1.5 1 1 0 1 1 1 1 Thymidylate kinase CHAD PF05235.9 gi|330835061|ref|YP_004409789.1| - 1.5e-06 27.9 0.3 0.011 15.2 0.1 2.2 2 0 0 2 2 2 2 CHAD domain P5CR_dimer PF14748.1 gi|330835062|ref|YP_004409790.1| - 1e-30 105.8 0.0 1.9e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|330835062|ref|YP_004409790.1| - 7.5e-18 64.7 0.2 4.5e-17 62.2 0.1 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|330835062|ref|YP_004409790.1| - 4.4e-06 26.6 0.1 1.1e-05 25.3 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|330835062|ref|YP_004409790.1| - 1.4e-05 24.8 2.4 0.00053 19.7 1.3 2.7 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|330835062|ref|YP_004409790.1| - 4.8e-05 22.8 0.1 0.00011 21.7 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.12 gi|330835062|ref|YP_004409790.1| - 0.00065 18.6 0.0 0.0013 17.6 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase 3HCDH_N PF02737.13 gi|330835062|ref|YP_004409790.1| - 0.00072 19.2 0.8 0.002 17.8 0.1 2.0 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330835062|ref|YP_004409790.1| - 0.0013 17.9 0.2 0.0025 17.0 0.0 1.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|330835062|ref|YP_004409790.1| - 0.0015 18.5 0.2 0.0028 17.6 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding ADH_zinc_N PF00107.21 gi|330835062|ref|YP_004409790.1| - 0.048 13.2 0.0 0.12 11.9 0.0 1.9 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Hjc PF01870.13 gi|330835063|ref|YP_004409791.1| - 2e-23 81.7 0.0 6.1e-23 80.2 0.0 1.6 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) Mrr_cat PF04471.7 gi|330835063|ref|YP_004409791.1| - 0.021 14.6 0.0 0.029 14.1 0.0 1.4 1 1 0 1 1 1 0 Restriction endonuclease CBS PF00571.23 gi|330835064|ref|YP_004409792.1| - 8.8e-15 54.2 0.3 8.8e-07 28.6 0.0 2.1 2 0 0 2 2 2 2 CBS domain malic PF00390.14 gi|330835064|ref|YP_004409792.1| - 0.065 12.8 0.1 0.33 10.5 0.1 1.9 2 0 0 2 2 2 0 Malic enzyme, N-terminal domain MFS_1 PF07690.11 gi|330835065|ref|YP_004409793.1| - 3.9e-10 38.9 12.3 3.9e-10 38.9 8.5 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily Dexa_ind PF15198.1 gi|330835065|ref|YP_004409793.1| - 0.022 14.6 1.2 3.3 7.6 0.1 2.5 2 0 0 2 2 2 0 Dexamethasone-induced DUF2208 PF09973.4 gi|330835065|ref|YP_004409793.1| - 0.072 12.3 1.5 0.15 11.3 1.0 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2208) DUF2453 PF10507.4 gi|330835065|ref|YP_004409793.1| - 0.088 12.6 2.4 0.13 12.0 0.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2453) MFS_2 PF13347.1 gi|330835065|ref|YP_004409793.1| - 1.1 7.6 15.8 0.038 12.3 5.9 1.8 1 1 1 2 2 2 0 MFS/sugar transport protein CbiA PF01656.18 gi|330835067|ref|YP_004409795.1| - 2.1e-13 50.1 0.5 1.1e-10 41.2 0.0 2.1 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330835067|ref|YP_004409795.1| - 1.8e-07 31.2 0.0 3.5e-07 30.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|330835067|ref|YP_004409795.1| - 7e-05 22.0 0.1 7e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|330835067|ref|YP_004409795.1| - 0.0034 16.4 0.0 0.0059 15.7 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|330835067|ref|YP_004409795.1| - 0.014 14.5 0.3 0.039 13.1 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family YhjQ PF06564.7 gi|330835067|ref|YP_004409795.1| - 0.026 13.8 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 YhjQ protein APS_kinase PF01583.15 gi|330835067|ref|YP_004409795.1| - 0.055 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AIRS_C PF02769.17 gi|330835069|ref|YP_004409797.1| - 3.7e-17 62.7 0.1 6e-17 62.0 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|330835069|ref|YP_004409797.1| - 4.2e-08 33.3 0.0 7.4e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DDE_Tnp_Tn3 PF01526.12 gi|330835070|ref|YP_004409798.1| - 0.0051 15.4 0.0 0.013 14.1 0.0 1.5 2 0 0 2 2 2 1 Tn3 transposase DDE domain FtsX PF02687.16 gi|330835070|ref|YP_004409798.1| - 0.48 10.1 13.9 0.16 11.7 2.2 2.6 1 1 1 2 2 2 0 FtsX-like permease family DUF2269 PF10027.4 gi|330835070|ref|YP_004409798.1| - 2.5 7.8 8.6 65 3.2 5.9 2.3 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) Alpha-amylase PF00128.19 gi|330835071|ref|YP_004409799.1| - 2.6e-35 122.3 0.4 5.1e-23 81.9 0.0 3.2 1 1 1 2 2 2 2 Alpha amylase, catalytic domain Alpha-amyl_C PF09071.5 gi|330835071|ref|YP_004409799.1| - 7e-17 60.9 0.0 1.5e-16 59.8 0.0 1.6 1 0 0 1 1 1 1 Alpha-amylase, C terminal CBM_48 PF02922.13 gi|330835071|ref|YP_004409799.1| - 0.0072 16.3 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DUF1680 PF07944.7 gi|330835071|ref|YP_004409799.1| - 0.21 9.8 0.0 0.31 9.2 0.0 1.1 1 0 0 1 1 1 0 Putative glycosyl hydrolase of unknown function (DUF1680) CBM_48 PF02922.13 gi|330835072|ref|YP_004409800.1| - 5.7e-23 80.7 0.1 1.9e-22 79.1 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.19 gi|330835072|ref|YP_004409800.1| - 8.1e-22 78.0 0.1 6.6e-20 71.7 0.0 2.9 1 1 0 1 1 1 1 Alpha amylase, catalytic domain GHL5 PF14872.1 gi|330835072|ref|YP_004409800.1| - 0.046 11.5 0.0 0.072 10.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Alpha-amylase PF00128.19 gi|330835073|ref|YP_004409801.1| - 3e-24 85.9 0.4 1.3e-20 74.1 0.1 3.4 2 1 0 2 2 2 2 Alpha amylase, catalytic domain Glyco_hydro_31 PF01055.21 gi|330835074|ref|YP_004409802.1| - 2.3e-136 455.1 0.0 2.8e-136 454.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|330835074|ref|YP_004409802.1| - 5.4e-16 58.2 0.2 1.6e-15 56.7 0.0 1.9 2 0 0 2 2 2 1 Galactose mutarotase-like MFS_1 PF07690.11 gi|330835075|ref|YP_004409803.1| - 1.8e-53 181.5 49.5 3.7e-51 173.9 27.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835075|ref|YP_004409803.1| - 2.5e-10 39.5 39.2 4.1e-10 38.8 8.1 2.8 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|330835075|ref|YP_004409803.1| - 3.2e-05 22.5 8.0 3.2e-05 22.5 5.6 4.2 1 1 3 4 4 4 3 MFS/sugar transport protein ThiC PF01964.13 gi|330835076|ref|YP_004409804.1| - 1.3e-180 600.4 0.0 1.5e-180 600.2 0.0 1.0 1 0 0 1 1 1 1 ThiC family ADH_N PF08240.7 gi|330835077|ref|YP_004409805.1| - 2.9e-26 91.3 0.5 2.9e-26 91.3 0.3 2.0 3 0 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330835077|ref|YP_004409805.1| - 1.4e-17 63.4 0.7 2.8e-17 62.5 0.5 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|330835077|ref|YP_004409805.1| - 2.9e-08 34.6 0.6 4.7e-07 30.7 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.16 gi|330835077|ref|YP_004409805.1| - 2.1e-05 24.1 0.9 4.2e-05 23.1 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|330835077|ref|YP_004409805.1| - 0.00033 20.7 0.4 0.00051 20.0 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding ELFV_dehydrog PF00208.16 gi|330835077|ref|YP_004409805.1| - 0.0013 18.3 0.7 0.0021 17.6 0.5 1.3 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.15 gi|330835077|ref|YP_004409805.1| - 0.01 15.7 1.6 0.73 9.7 0.4 2.3 1 1 1 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DUF1244 PF06844.6 gi|330835077|ref|YP_004409805.1| - 0.16 11.8 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1244) UPF0114 PF03350.11 gi|330835078|ref|YP_004409806.1| - 0.047 13.5 0.3 0.082 12.8 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein family, UPF0114 UPF0259 PF06790.6 gi|330835078|ref|YP_004409806.1| - 0.98 8.8 6.4 0.088 12.2 1.5 1.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0259) Cation_efflux PF01545.16 gi|330835079|ref|YP_004409807.1| - 5.9e-37 127.2 12.2 6.8e-37 127.0 8.5 1.0 1 0 0 1 1 1 1 Cation efflux family DUF4514 PF14986.1 gi|330835079|ref|YP_004409807.1| - 0.097 12.4 2.1 0.21 11.4 1.5 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4514) Cytochrom_B_N PF00033.14 gi|330835079|ref|YP_004409807.1| - 0.24 10.7 3.7 0.49 9.7 2.6 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Halogen_Hydrol PF10112.4 gi|330835079|ref|YP_004409807.1| - 0.88 8.9 4.8 3.7 6.8 3.5 2.1 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein FUSC_2 PF13515.1 gi|330835079|ref|YP_004409807.1| - 4.1 7.3 13.7 98 2.8 9.5 2.2 1 1 0 1 1 1 0 Fusaric acid resistance protein-like UPF0154 PF03672.8 gi|330835079|ref|YP_004409807.1| - 6.6 6.4 8.3 3.9 7.1 1.0 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) DUF973 PF06157.6 gi|330835080|ref|YP_004409808.1| - 1.5e-30 106.1 25.3 2.1e-30 105.6 17.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF3366 PF11846.3 gi|330835080|ref|YP_004409808.1| - 0.046 13.6 0.7 0.11 12.3 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3366) Claudin_2 PF13903.1 gi|330835080|ref|YP_004409808.1| - 0.066 12.8 0.4 0.066 12.8 0.3 2.1 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction DUF4399 PF14347.1 gi|330835080|ref|YP_004409808.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4399) B12-binding PF02310.14 gi|330835082|ref|YP_004409810.1| - 0.048 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain AIM24 PF01987.12 gi|330835083|ref|YP_004409811.1| - 8.9e-53 178.9 2.1 1e-52 178.7 1.5 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 TusA PF01206.12 gi|330835084|ref|YP_004409812.1| - 1.5e-14 53.2 0.2 1.8e-14 53.1 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|330835084|ref|YP_004409812.1| - 0.0018 17.8 0.0 0.0025 17.3 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Cupin_2 PF07883.6 gi|330835085|ref|YP_004409813.1| - 6.6e-15 54.3 0.1 9.7e-15 53.8 0.1 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|330835085|ref|YP_004409813.1| - 6.5e-10 38.8 0.1 7.3e-10 38.6 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.17 gi|330835085|ref|YP_004409813.1| - 4.6e-09 35.8 0.0 5.2e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|330835085|ref|YP_004409813.1| - 0.0015 18.2 0.1 0.0018 17.9 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.2 gi|330835085|ref|YP_004409813.1| - 0.094 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Thioredoxin PF00085.15 gi|330835087|ref|YP_004409815.1| - 1.4e-26 92.2 0.0 1.8e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|330835087|ref|YP_004409815.1| - 1.5e-08 34.7 0.2 1.2e-06 28.6 0.0 2.5 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|330835087|ref|YP_004409815.1| - 2.9e-08 33.6 0.3 0.00039 20.4 0.0 2.9 2 1 1 3 3 3 2 Thioredoxin-like AhpC-TSA PF00578.16 gi|330835087|ref|YP_004409815.1| - 1.1e-05 25.0 0.1 0.011 15.4 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA family Phosducin PF02114.11 gi|330835087|ref|YP_004409815.1| - 1.6e-05 23.7 0.0 2.2e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Phosducin Thioredoxin_9 PF14595.1 gi|330835087|ref|YP_004409815.1| - 4.7e-05 22.9 0.2 0.00015 21.3 0.1 1.7 1 1 1 2 2 2 1 Thioredoxin Redoxin PF08534.5 gi|330835087|ref|YP_004409815.1| - 0.00022 20.8 0.0 0.00089 18.8 0.0 1.9 1 1 0 1 1 1 1 Redoxin HyaE PF07449.6 gi|330835087|ref|YP_004409815.1| - 0.00023 21.0 0.0 0.00096 19.0 0.0 1.9 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_3 PF13192.1 gi|330835087|ref|YP_004409815.1| - 0.0012 18.5 0.0 0.0043 16.8 0.0 1.8 1 1 1 2 2 2 1 Thioredoxin domain MIT PF04212.13 gi|330835087|ref|YP_004409815.1| - 0.048 13.5 1.0 0.068 13.0 0.7 1.3 1 0 0 1 1 1 0 MIT (microtubule interacting and transport) domain Arg_repressor PF01316.16 gi|330835087|ref|YP_004409815.1| - 0.084 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Thioredoxin_7 PF13899.1 gi|330835087|ref|YP_004409815.1| - 0.096 12.7 0.8 0.85 9.6 0.3 2.4 1 1 1 2 2 2 0 Thioredoxin-like DAO PF01266.19 gi|330835088|ref|YP_004409816.1| - 6.9e-09 35.0 0.0 1.3e-08 34.2 0.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase tRNA_deacylase PF04414.7 gi|330835089|ref|YP_004409817.1| - 7.6e-58 195.1 0.0 9.4e-58 194.8 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase His_Phos_1 PF00300.17 gi|330835090|ref|YP_004409818.1| - 9.5e-27 94.0 0.0 1.2e-26 93.7 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) YliH PF10799.3 gi|330835090|ref|YP_004409818.1| - 0.077 12.6 0.2 0.21 11.2 0.0 1.7 2 0 0 2 2 2 0 Biofilm formation protein (YliH/bssR) Metallophos_2 PF12850.2 gi|330835091|ref|YP_004409819.1| - 1.5e-06 28.1 0.0 1.4e-05 24.9 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|330835091|ref|YP_004409819.1| - 0.002 17.5 0.7 0.023 14.0 0.5 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|330835091|ref|YP_004409819.1| - 0.0088 15.2 0.1 0.017 14.2 0.1 1.5 1 0 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily SSURE PF11966.3 gi|330835091|ref|YP_004409819.1| - 0.04 13.4 0.1 0.067 12.7 0.1 1.4 1 0 0 1 1 1 0 Fibronectin-binding repeat NAD_Gly3P_dh_N PF01210.18 gi|330835091|ref|YP_004409819.1| - 0.096 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CBS PF00571.23 gi|330835092|ref|YP_004409820.1| - 2.7e-32 110.2 4.1 9.2e-17 60.5 0.1 2.1 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|330835092|ref|YP_004409820.1| - 0.0072 16.3 0.1 5.1 7.2 0.0 2.3 2 0 0 2 2 2 2 Ribosomal protein L9, C-terminal domain Rad50_zn_hook PF04423.9 gi|330835092|ref|YP_004409820.1| - 0.0089 15.4 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 Rad50 zinc hook motif IF3_N PF05198.11 gi|330835092|ref|YP_004409820.1| - 0.019 14.8 1.0 2.1 8.3 0.1 2.6 2 1 1 3 3 3 0 Translation initiation factor IF-3, N-terminal domain DUF1840 PF08895.6 gi|330835092|ref|YP_004409820.1| - 0.029 14.3 0.1 1.3 9.0 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF1840) PRC PF05239.11 gi|330835092|ref|YP_004409820.1| - 0.044 13.6 0.6 3 7.7 0.0 2.4 2 0 0 2 2 2 0 PRC-barrel domain Cache_3 PF14827.1 gi|330835092|ref|YP_004409820.1| - 0.12 12.2 3.6 0.97 9.3 0.2 2.3 1 1 0 2 2 2 0 Sensory domain of two-component sensor kinase DUF3659 PF12396.3 gi|330835092|ref|YP_004409820.1| - 0.5 10.0 5.4 2 8.1 0.5 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF3659) AAA_27 PF13514.1 gi|330835094|ref|YP_004409822.1| - 4.7e-07 27.9 1.0 4.7e-07 27.9 0.7 3.1 1 1 2 3 3 3 2 AAA domain AAA_23 PF13476.1 gi|330835094|ref|YP_004409822.1| - 0.00038 20.8 71.0 1.5e+04 -9.8 49.2 4.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|330835094|ref|YP_004409822.1| - 0.003 16.8 28.8 0.13 11.4 18.0 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain FlxA PF14282.1 gi|330835094|ref|YP_004409822.1| - 0.018 15.0 53.9 0.079 12.9 0.7 4.4 2 2 2 4 4 4 0 FlxA-like protein SbcCD_C PF13558.1 gi|330835094|ref|YP_004409822.1| - 0.044 13.6 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit GAS PF13851.1 gi|330835094|ref|YP_004409822.1| - 0.063 12.4 61.4 0.022 13.9 7.2 4.7 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding IU_nuc_hydro PF01156.14 gi|330835095|ref|YP_004409823.1| - 1.2e-66 225.0 0.0 1.3e-66 224.9 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase FUR PF01475.14 gi|330835096|ref|YP_004409824.1| - 1.4e-22 79.8 0.0 1.7e-22 79.5 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|330835096|ref|YP_004409824.1| - 0.0021 17.8 0.0 0.0049 16.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|330835096|ref|YP_004409824.1| - 0.0037 17.3 0.0 0.0083 16.2 0.0 1.6 1 1 1 2 2 2 1 Penicillinase repressor HTH_11 PF08279.7 gi|330835096|ref|YP_004409824.1| - 0.0052 16.4 0.1 0.17 11.5 0.0 2.5 1 1 1 2 2 2 1 HTH domain PadR PF03551.9 gi|330835096|ref|YP_004409824.1| - 0.0069 16.1 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|330835096|ref|YP_004409824.1| - 0.011 15.3 0.0 0.034 13.8 0.0 1.8 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|330835096|ref|YP_004409824.1| - 0.012 15.2 0.0 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|330835096|ref|YP_004409824.1| - 0.03 13.9 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_28 PF13518.1 gi|330835096|ref|YP_004409824.1| - 0.053 13.5 0.0 0.47 10.4 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_CodY PF08222.6 gi|330835096|ref|YP_004409824.1| - 0.057 12.7 0.1 0.21 10.9 0.0 1.9 1 1 0 1 1 1 0 CodY helix-turn-helix domain HTH_32 PF13565.1 gi|330835096|ref|YP_004409824.1| - 0.065 14.0 0.0 0.15 12.9 0.0 1.7 1 1 0 1 1 1 0 Homeodomain-like domain HTH_24 PF13412.1 gi|330835096|ref|YP_004409824.1| - 0.07 12.5 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF4423 PF14394.1 gi|330835096|ref|YP_004409824.1| - 0.13 11.7 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) CBS PF00571.23 gi|330835097|ref|YP_004409825.1| - 9.7e-46 153.3 11.7 5e-14 51.8 0.5 4.1 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|330835097|ref|YP_004409825.1| - 0.0023 17.9 0.3 0.71 9.9 0.0 3.2 3 0 0 3 3 3 1 Ribosomal protein L9, C-terminal domain Peripla_BP_1 PF00532.16 gi|330835097|ref|YP_004409825.1| - 0.052 12.7 0.0 1.3 8.2 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family DUF3659 PF12396.3 gi|330835097|ref|YP_004409825.1| - 0.43 10.2 4.4 37 4.0 0.0 4.0 4 1 1 5 5 5 0 Protein of unknown function (DUF3659) RPA PF10134.4 gi|330835098|ref|YP_004409826.1| - 0.014 14.6 0.1 0.015 14.5 0.1 1.2 1 0 0 1 1 1 0 Replication initiator protein A TelA PF05816.6 gi|330835098|ref|YP_004409826.1| - 0.037 12.7 1.0 0.045 12.4 0.7 1.0 1 0 0 1 1 1 0 Toxic anion resistance protein (TelA) Methyltransf_11 PF08241.7 gi|330835099|ref|YP_004409827.1| - 4.9e-07 30.1 0.0 9.2e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330835099|ref|YP_004409827.1| - 0.13 12.6 0.0 0.37 11.1 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain NurA PF09376.5 gi|330835100|ref|YP_004409828.1| - 8.8e-31 107.2 0.5 8.8e-31 107.2 0.3 1.3 2 0 0 2 2 2 1 NurA domain DUF1835 PF08874.5 gi|330835100|ref|YP_004409828.1| - 0.13 12.1 0.0 0.32 10.9 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1835) SMC_N PF02463.14 gi|330835101|ref|YP_004409829.1| - 4.7e-19 68.4 32.8 1.4e-18 66.9 22.8 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|330835101|ref|YP_004409829.1| - 1.2e-15 57.1 69.4 5.6e-07 28.4 0.3 4.2 1 1 3 4 4 4 4 AAA domain AAA_23 PF13476.1 gi|330835101|ref|YP_004409829.1| - 4.4e-15 56.5 27.5 4.4e-15 56.5 19.1 6.0 1 1 1 2 2 1 1 AAA domain AAA_21 PF13304.1 gi|330835101|ref|YP_004409829.1| - 1.7e-11 44.6 26.9 9e-08 32.4 2.2 3.9 2 2 1 3 3 3 2 AAA domain Rad50_zn_hook PF04423.9 gi|330835101|ref|YP_004409829.1| - 6.5e-08 31.9 0.2 6.5e-08 31.9 0.1 6.5 5 1 0 5 5 5 1 Rad50 zinc hook motif AAA_29 PF13555.1 gi|330835101|ref|YP_004409829.1| - 2.3e-07 30.2 0.0 4.5e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|330835101|ref|YP_004409829.1| - 4e-07 29.8 0.0 1.2e-06 28.3 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|330835101|ref|YP_004409829.1| - 4.2e-06 26.0 64.5 2.3e-05 23.6 0.2 3.3 1 1 2 3 3 2 2 AAA ATPase domain DUF258 PF03193.11 gi|330835101|ref|YP_004409829.1| - 6.9e-05 22.0 0.0 0.00045 19.4 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Tropomyosin_1 PF12718.2 gi|330835101|ref|YP_004409829.1| - 0.00034 20.4 25.1 0.00034 20.4 17.4 6.2 2 2 4 6 6 3 2 Tropomyosin like Reo_sigmaC PF04582.7 gi|330835101|ref|YP_004409829.1| - 0.00097 18.4 29.9 0.0019 17.4 2.4 4.2 2 2 3 5 5 5 3 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|330835101|ref|YP_004409829.1| - 0.0023 15.7 84.2 0.0041 14.9 0.0 5.5 3 1 2 5 5 5 2 AAA domain ABC_tran PF00005.22 gi|330835101|ref|YP_004409829.1| - 0.0036 17.6 32.3 0.41 10.9 7.5 5.4 2 2 0 2 2 2 1 ABC transporter Spc7 PF08317.6 gi|330835101|ref|YP_004409829.1| - 0.004 15.8 14.4 0.004 15.8 10.0 6.2 3 2 2 5 5 5 2 Spc7 kinetochore protein ADIP PF11559.3 gi|330835101|ref|YP_004409829.1| - 0.0065 16.3 6.8 0.0065 16.3 4.7 8.0 2 2 6 8 8 6 1 Afadin- and alpha -actinin-Binding Baculo_PEP_C PF04513.7 gi|330835101|ref|YP_004409829.1| - 0.031 14.0 34.0 4 7.2 0.0 6.2 2 2 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus MMR_HSR1 PF01926.18 gi|330835101|ref|YP_004409829.1| - 0.055 13.4 0.3 0.35 10.8 0.2 2.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Filament PF00038.16 gi|330835101|ref|YP_004409829.1| - 0.25 10.7 88.7 0.041 13.3 23.4 4.1 2 1 1 3 3 3 0 Intermediate filament protein BLOC1_2 PF10046.4 gi|330835101|ref|YP_004409829.1| - 0.61 10.2 61.0 0.023 14.8 3.8 8.0 3 2 4 8 8 8 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GAS PF13851.1 gi|330835101|ref|YP_004409829.1| - 2 7.5 103.5 0.068 12.3 6.1 6.5 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.7 gi|330835101|ref|YP_004409829.1| - 3 8.1 41.5 0.25 11.6 1.2 7.7 4 3 1 6 6 6 0 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|330835101|ref|YP_004409829.1| - 4.9 6.7 110.6 0.26 10.8 12.2 6.2 1 1 4 5 5 5 0 IncA protein Metallophos PF00149.23 gi|330835102|ref|YP_004409830.1| - 2.9e-16 59.4 0.4 4.2e-16 58.9 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|330835102|ref|YP_004409830.1| - 1.2e-13 51.2 0.0 2.5e-13 50.1 0.0 1.5 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Methyltransf_4 PF02390.12 gi|330835102|ref|YP_004409830.1| - 0.034 13.2 0.0 0.063 12.3 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Rad60-SLD PF11976.3 gi|330835102|ref|YP_004409830.1| - 0.069 12.8 0.0 0.21 11.3 0.0 1.8 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like DUF87 PF01935.12 gi|330835103|ref|YP_004409831.1| - 3.4e-44 151.3 1.0 6.6e-44 150.4 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330835103|ref|YP_004409831.1| - 1.4e-24 87.1 2.3 1.3e-23 83.9 1.6 2.1 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|330835103|ref|YP_004409831.1| - 1.5e-12 46.6 1.6 1e-06 27.4 0.0 2.5 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|330835103|ref|YP_004409831.1| - 1.6e-10 40.6 0.1 1.6e-10 40.6 0.1 2.9 3 0 0 3 3 3 1 HAS barrel domain TrwB_AAD_bind PF10412.4 gi|330835103|ref|YP_004409831.1| - 3.9e-09 35.6 0.0 1.9e-06 26.7 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|330835103|ref|YP_004409831.1| - 6.3e-07 29.0 0.2 2.7e-06 27.0 0.0 2.1 2 1 0 2 2 2 1 FtsK/SpoIIIE family PP2C_C PF07830.8 gi|330835103|ref|YP_004409831.1| - 0.0092 16.0 0.3 0.088 12.9 0.0 2.7 2 0 0 2 2 2 1 Protein serine/threonine phosphatase 2C, C-terminal domain AAA_25 PF13481.1 gi|330835103|ref|YP_004409831.1| - 0.02 14.3 2.1 3.4 7.0 0.0 2.7 2 1 1 3 3 3 0 AAA domain Phasin PF05597.6 gi|330835103|ref|YP_004409831.1| - 0.049 13.3 1.1 0.17 11.6 0.4 2.1 2 0 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ABC_tran PF00005.22 gi|330835103|ref|YP_004409831.1| - 0.12 12.6 0.2 0.26 11.5 0.1 1.5 1 1 0 1 1 1 0 ABC transporter Band_7 PF01145.20 gi|330835103|ref|YP_004409831.1| - 0.18 11.6 2.8 0.27 11.1 1.0 1.9 2 0 0 2 2 2 0 SPFH domain / Band 7 family Imm2 PF14426.1 gi|330835104|ref|YP_004409832.1| - 0.0013 18.6 0.4 0.02 14.8 0.0 2.4 2 0 0 2 2 2 1 Immunity protein Imm2 Fz PF01392.17 gi|330835104|ref|YP_004409832.1| - 0.0075 16.6 1.2 2 8.8 0.1 2.2 1 1 1 2 2 2 2 Fz domain Phage_CII PF05269.6 gi|330835104|ref|YP_004409832.1| - 0.015 15.2 0.3 2.9 7.9 0.0 2.6 2 0 0 2 2 2 0 Bacteriophage CII protein DUF905 PF06006.7 gi|330835104|ref|YP_004409832.1| - 0.057 12.7 0.1 12 5.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF905) DUF3240 PF11582.3 gi|330835104|ref|YP_004409832.1| - 0.067 13.1 1.9 0.29 11.0 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3240) Ser_hydrolase PF06821.8 gi|330835104|ref|YP_004409832.1| - 0.083 12.4 0.9 9.7 5.7 0.1 2.2 1 1 0 2 2 2 0 Serine hydrolase DUF2024 PF09630.5 gi|330835104|ref|YP_004409832.1| - 0.088 12.5 5.9 2.9 7.6 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) Cullin_binding PF03556.10 gi|330835104|ref|YP_004409832.1| - 0.089 12.9 0.2 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 Cullin binding Rpr2 PF04032.11 gi|330835104|ref|YP_004409832.1| - 0.12 12.2 0.2 11 5.9 0.0 2.2 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF3567 PF12091.3 gi|330835104|ref|YP_004409832.1| - 0.14 12.1 1.0 8.5 6.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3567) TENA_THI-4 PF03070.11 gi|330835104|ref|YP_004409832.1| - 0.27 10.9 6.2 0.38 10.4 4.3 1.3 1 0 0 1 1 1 0 TENA/THI-4/PQQC family TPR_2 PF07719.12 gi|330835104|ref|YP_004409832.1| - 0.76 9.8 0.1 0.76 9.8 0.1 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|330835104|ref|YP_004409832.1| - 1.5 9.2 7.1 3.9 7.9 0.6 3.4 2 2 0 2 2 2 0 Tetratricopeptide repeat DUF1811 PF08838.5 gi|330835104|ref|YP_004409832.1| - 4.5 7.2 10.2 16 5.5 0.4 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1811) Microtub_assoc PF07989.6 gi|330835104|ref|YP_004409832.1| - 9.6 6.1 11.2 6.4 6.6 0.3 2.8 3 1 0 3 3 3 0 Microtubule associated Carb_kinase PF01256.12 gi|330835105|ref|YP_004409833.1| - 7.3e-52 176.0 0.1 1e-51 175.5 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|330835105|ref|YP_004409833.1| - 8e-43 145.9 0.1 3.8e-42 143.7 0.0 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|330835105|ref|YP_004409833.1| - 3.7e-09 36.1 0.1 4.8e-08 32.4 0.0 2.2 1 1 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|330835105|ref|YP_004409833.1| - 0.00027 20.1 0.0 0.0005 19.3 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase NAD_binding_7 PF13241.1 gi|330835105|ref|YP_004409833.1| - 0.26 11.5 1.2 19 5.5 0.0 3.0 2 1 0 2 2 2 0 Putative NAD(P)-binding AhpC-TSA PF00578.16 gi|330835106|ref|YP_004409834.1| - 2.8e-39 133.6 0.1 3.3e-39 133.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330835106|ref|YP_004409834.1| - 2.6e-24 85.4 0.1 3e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin M60-like PF13402.1 gi|330835106|ref|YP_004409834.1| - 0.002 17.0 0.0 0.0024 16.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase M60-like family Thioredoxin_8 PF13905.1 gi|330835106|ref|YP_004409834.1| - 0.0049 16.9 0.0 0.0068 16.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.7 gi|330835106|ref|YP_004409834.1| - 0.026 13.9 0.0 0.03 13.7 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) AhpC-TSA_2 PF13911.1 gi|330835106|ref|YP_004409834.1| - 0.027 14.3 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme PEPcase_2 PF14010.1 gi|330835107|ref|YP_004409835.1| - 4.5e-195 648.6 1.6 5.1e-195 648.4 1.1 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Amidase PF01425.16 gi|330835108|ref|YP_004409836.1| - 1.4e-92 310.8 0.2 2.9e-92 309.8 0.2 1.4 1 1 0 1 1 1 1 Amidase CPSase_L_D3 PF02787.14 gi|330835109|ref|YP_004409837.1| - 0.033 13.9 0.2 0.053 13.2 0.1 1.2 1 0 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF768 PF05589.6 gi|330835109|ref|YP_004409837.1| - 0.069 13.0 0.0 0.34 10.8 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF768) DUF998 PF06197.8 gi|330835110|ref|YP_004409838.1| - 1.6e-26 92.7 17.7 1.8e-26 92.5 12.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MS_channel PF00924.13 gi|330835112|ref|YP_004409840.1| - 4.6e-18 65.2 2.6 4.6e-18 65.2 1.8 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Gly-zipper_OmpA PF13436.1 gi|330835112|ref|YP_004409840.1| - 0.035 13.7 8.6 0.054 13.1 5.9 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain SieB PF14163.1 gi|330835112|ref|YP_004409840.1| - 0.13 11.7 1.0 0.21 11.1 0.2 1.7 1 1 0 1 1 1 0 Superinfection exclusion protein B DUF4117 PF13491.1 gi|330835112|ref|YP_004409840.1| - 0.71 9.2 13.0 0.2 11.0 7.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) Bacteriocin_IIc PF10439.4 gi|330835112|ref|YP_004409840.1| - 2.1 8.5 9.9 3.6 7.7 6.9 1.4 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Gly-zipper_YMGG PF13441.1 gi|330835112|ref|YP_004409840.1| - 3 7.4 18.3 6 6.4 12.7 1.5 1 0 0 1 1 1 0 YMGG-like Gly-zipper FtsX PF02687.16 gi|330835112|ref|YP_004409840.1| - 3.6 7.3 15.4 0.87 9.3 0.6 2.8 2 1 1 3 3 3 0 FtsX-like permease family TauE PF01925.14 gi|330835113|ref|YP_004409841.1| - 3.4e-32 111.8 38.9 4.3e-32 111.4 27.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Gly-zipper_YMGG PF13441.1 gi|330835113|ref|YP_004409841.1| - 0.074 12.5 6.8 0.39 10.2 0.3 2.8 2 0 0 2 2 2 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|330835113|ref|YP_004409841.1| - 2.2 7.9 11.0 2.9 7.5 0.8 3.0 2 0 0 2 2 2 0 Glycine zipper Dak2 PF02734.12 gi|330835113|ref|YP_004409841.1| - 3.5 7.2 5.8 1.4 8.5 0.3 2.4 2 1 1 3 3 3 0 DAK2 domain Rick_17kDa_Anti PF05433.10 gi|330835113|ref|YP_004409841.1| - 7.7 6.2 10.6 5.8 6.6 1.3 2.8 2 0 0 2 2 2 0 Glycine zipper 2TM domain eRF1_2 PF03464.10 gi|330835114|ref|YP_004409842.1| - 5.6e-35 120.5 0.0 1e-34 119.7 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|330835114|ref|YP_004409842.1| - 1.8e-19 70.0 1.8 1e-18 67.6 0.5 2.6 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|330835114|ref|YP_004409842.1| - 2.8e-18 65.7 0.0 5.7e-18 64.7 0.0 1.5 2 0 0 2 2 2 1 eRF1 domain 1 Pribosyltran PF00156.22 gi|330835115|ref|YP_004409843.1| - 6.9e-16 58.0 0.6 1.1e-15 57.4 0.4 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330835115|ref|YP_004409843.1| - 0.075 12.2 0.0 0.097 11.8 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Rhodanese PF00581.15 gi|330835116|ref|YP_004409844.1| - 1.1e-11 45.1 0.0 1.6e-11 44.5 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain Ribosomal_S13_N PF08069.7 gi|330835117|ref|YP_004409845.1| - 0.1 12.4 0.1 0.28 11.0 0.1 1.7 1 0 0 1 1 1 0 Ribosomal S13/S15 N-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|330835118|ref|YP_004409846.1| - 4.9e-138 460.8 0.0 6.4e-138 460.4 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330835118|ref|YP_004409846.1| - 6.7e-24 84.0 0.0 2.2e-23 82.4 0.0 1.9 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SpoIIIAH PF12685.2 gi|330835118|ref|YP_004409846.1| - 0.0053 16.2 0.1 0.0088 15.5 0.1 1.3 1 0 0 1 1 1 1 SpoIIIAH-like protein DUF2203 PF09969.4 gi|330835119|ref|YP_004409847.1| - 2.8e-32 111.4 0.1 4.5e-32 110.7 0.1 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) Hjc PF01870.13 gi|330835121|ref|YP_004409849.1| - 0.059 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Archaeal holliday junction resolvase (hjc) AAA_21 PF13304.1 gi|330835121|ref|YP_004409849.1| - 0.06 13.2 1.6 0.11 12.4 1.0 1.5 1 1 0 1 1 1 0 AAA domain Thioredox_DsbH PF03190.10 gi|330835123|ref|YP_004409851.1| - 5.8e-63 211.4 0.1 9.8e-63 210.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|330835123|ref|YP_004409851.1| - 8.5e-18 64.1 0.1 1.8e-17 63.0 0.1 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|330835123|ref|YP_004409851.1| - 3.5e-07 30.3 0.0 8.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.15 gi|330835123|ref|YP_004409851.1| - 8.2e-05 22.2 0.1 0.00017 21.1 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin ATP13 PF12921.2 gi|330835123|ref|YP_004409851.1| - 0.066 12.5 0.0 0.2 10.9 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ATPase expression adh_short_C2 PF13561.1 gi|330835124|ref|YP_004409852.1| - 2.6e-20 73.2 0.0 5.8e-20 72.0 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|330835124|ref|YP_004409852.1| - 3.2e-16 59.6 0.0 4.1e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|330835124|ref|YP_004409852.1| - 1.4e-05 24.8 0.1 4.9e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 KR domain Ham1p_like PF01725.11 gi|330835124|ref|YP_004409852.1| - 0.006 15.9 0.0 0.0091 15.3 0.0 1.2 1 0 0 1 1 1 1 Ham1 family THF_DHG_CYH_C PF02882.14 gi|330835124|ref|YP_004409852.1| - 0.014 14.4 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DUF460 PF04312.8 gi|330835124|ref|YP_004409852.1| - 0.017 14.6 0.0 0.044 13.3 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF460) NAD_binding_10 PF13460.1 gi|330835124|ref|YP_004409852.1| - 0.018 15.0 0.0 0.037 14.0 0.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding Glyco_transf_21 PF13506.1 gi|330835126|ref|YP_004409854.1| - 2.6e-16 59.4 0.0 3.7e-16 58.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.21 gi|330835126|ref|YP_004409854.1| - 1.3e-14 54.2 0.0 1.9e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|330835126|ref|YP_004409854.1| - 1.8e-14 54.1 0.0 2.5e-14 53.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330835126|ref|YP_004409854.1| - 0.016 14.9 5.1 0.03 14.0 3.5 1.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 MttA_Hcf106 PF02416.11 gi|330835128|ref|YP_004409856.1| - 4.1e-10 38.6 4.0 1.8e-09 36.5 2.8 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family DUF3573 PF12097.3 gi|330835128|ref|YP_004409856.1| - 0.0059 15.2 2.4 0.0057 15.3 1.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) DUF342 PF03961.8 gi|330835128|ref|YP_004409856.1| - 0.0067 14.8 2.0 0.0068 14.8 1.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF342) AAA_23 PF13476.1 gi|330835128|ref|YP_004409856.1| - 0.013 15.8 5.1 0.013 15.8 3.5 1.0 1 0 0 1 1 1 0 AAA domain Dynamitin PF04912.9 gi|330835128|ref|YP_004409856.1| - 0.014 14.2 7.7 0.016 14.0 5.4 1.0 1 0 0 1 1 1 0 Dynamitin ROS_MUCR PF05443.6 gi|330835128|ref|YP_004409856.1| - 0.024 14.4 1.8 3.1 7.5 0.0 2.0 1 1 1 2 2 2 0 ROS/MUCR transcriptional regulator protein DUF1192 PF06698.6 gi|330835128|ref|YP_004409856.1| - 0.036 13.8 1.4 0.055 13.2 0.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) Ribosomal_L29 PF00831.18 gi|330835128|ref|YP_004409856.1| - 0.063 12.9 6.3 0.13 12.0 4.4 1.5 1 0 0 1 1 1 0 Ribosomal L29 protein Syntaxin-6_N PF09177.6 gi|330835128|ref|YP_004409856.1| - 0.1 13.0 4.2 0.13 12.6 2.9 1.2 1 0 0 1 1 1 0 Syntaxin 6, N-terminal V-ATPase_G PF03179.10 gi|330835128|ref|YP_004409856.1| - 0.24 11.7 7.8 0.3 11.3 5.4 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF2968 PF11180.3 gi|330835128|ref|YP_004409856.1| - 0.31 10.3 10.9 0.36 10.1 7.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Med10 PF09748.4 gi|330835128|ref|YP_004409856.1| - 0.71 9.6 6.5 1.1 9.1 4.6 1.3 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex FlxA PF14282.1 gi|330835128|ref|YP_004409856.1| - 1.4 8.8 22.2 6.7 6.7 15.4 1.8 1 1 0 1 1 1 0 FlxA-like protein DUF4446 PF14584.1 gi|330835128|ref|YP_004409856.1| - 1.9 8.2 5.5 7.7 6.3 3.8 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) DUF948 PF06103.6 gi|330835128|ref|YP_004409856.1| - 2.2 8.1 7.5 3.8 7.4 1.7 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) SecA_DEAD PF07517.9 gi|330835128|ref|YP_004409856.1| - 2.7 7.2 6.3 3.1 7.0 4.4 1.1 1 0 0 1 1 1 0 SecA DEAD-like domain DUF4407 PF14362.1 gi|330835128|ref|YP_004409856.1| - 4 6.3 8.5 5.4 5.8 5.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Prefoldin_2 PF01920.15 gi|330835129|ref|YP_004409857.1| - 6.1e-05 22.7 0.6 0.066 12.9 0.0 2.1 2 0 0 2 2 2 2 Prefoldin subunit MttA_Hcf106 PF02416.11 gi|330835129|ref|YP_004409857.1| - 0.0002 20.4 0.5 0.00025 20.0 0.3 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family DUF3375 PF11855.3 gi|330835129|ref|YP_004409857.1| - 0.00046 19.0 1.1 0.01 14.5 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3375) TMF_DNA_bd PF12329.3 gi|330835129|ref|YP_004409857.1| - 0.0013 18.5 5.1 0.4 10.5 0.7 2.1 2 0 0 2 2 2 2 TATA element modulatory factor 1 DNA binding DivIC PF04977.10 gi|330835129|ref|YP_004409857.1| - 0.0025 17.2 1.5 0.069 12.6 0.3 2.2 2 0 0 2 2 2 1 Septum formation initiator Snapin_Pallidin PF14712.1 gi|330835129|ref|YP_004409857.1| - 0.004 17.4 0.4 0.59 10.4 0.0 2.1 2 0 0 2 2 2 1 Snapin/Pallidin FlxA PF14282.1 gi|330835129|ref|YP_004409857.1| - 0.0042 17.0 2.6 0.038 13.9 0.2 2.0 2 0 0 2 2 2 1 FlxA-like protein DUF4140 PF13600.1 gi|330835129|ref|YP_004409857.1| - 0.0051 17.2 3.2 0.0094 16.3 0.6 1.9 1 1 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.17 gi|330835129|ref|YP_004409857.1| - 0.0063 16.5 4.6 0.19 11.7 0.1 2.1 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain DUF1192 PF06698.6 gi|330835129|ref|YP_004409857.1| - 0.013 15.3 1.3 0.051 13.3 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Snf7 PF03357.16 gi|330835129|ref|YP_004409857.1| - 0.016 14.5 1.3 2.8 7.3 0.6 2.1 2 0 0 2 2 2 0 Snf7 DUF904 PF06005.7 gi|330835129|ref|YP_004409857.1| - 0.017 15.4 3.3 0.11 12.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Fib_alpha PF08702.5 gi|330835129|ref|YP_004409857.1| - 0.022 14.9 0.4 0.036 14.2 0.3 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DASH_Spc34 PF08657.5 gi|330835129|ref|YP_004409857.1| - 0.023 14.3 0.1 0.027 14.1 0.0 1.0 1 0 0 1 1 1 0 DASH complex subunit Spc34 DASH_Dad3 PF08656.5 gi|330835129|ref|YP_004409857.1| - 0.038 13.6 0.3 7.3 6.3 0.0 2.1 2 0 0 2 2 2 0 DASH complex subunit Dad3 AKNA PF12443.3 gi|330835129|ref|YP_004409857.1| - 0.046 13.7 0.4 6.2 6.8 0.0 2.1 2 0 0 2 2 2 0 AT-hook-containing transcription factor TMF_TATA_bd PF12325.3 gi|330835129|ref|YP_004409857.1| - 0.048 13.3 1.3 3.5 7.3 0.1 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF948 PF06103.6 gi|330835129|ref|YP_004409857.1| - 0.051 13.4 0.2 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF4618 PF15397.1 gi|330835129|ref|YP_004409857.1| - 0.058 12.7 0.3 0.52 9.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Blo-t-5 PF11642.3 gi|330835129|ref|YP_004409857.1| - 0.063 13.0 1.3 1.5 8.5 0.0 2.0 2 0 0 2 2 2 0 Mite allergen Blo t 5 FlaC_arch PF05377.6 gi|330835129|ref|YP_004409857.1| - 0.071 13.0 1.7 3 7.8 0.1 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) TSC22 PF01166.13 gi|330835129|ref|YP_004409857.1| - 0.073 13.0 1.0 1.8 8.6 0.1 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family XPG_I_2 PF12813.2 gi|330835129|ref|YP_004409857.1| - 0.081 12.4 0.0 0.092 12.2 0.0 1.0 1 0 0 1 1 1 0 XPG domain containing Mnd1 PF03962.10 gi|330835129|ref|YP_004409857.1| - 0.1 12.2 1.0 0.15 11.7 0.7 1.3 1 1 0 1 1 1 0 Mnd1 family bZIP_1 PF00170.16 gi|330835129|ref|YP_004409857.1| - 0.11 12.4 3.2 0.46 10.4 0.1 2.1 2 0 0 2 2 2 0 bZIP transcription factor IncA PF04156.9 gi|330835129|ref|YP_004409857.1| - 0.11 12.0 2.6 0.086 12.4 0.9 1.4 1 1 0 1 1 1 0 IncA protein GrpE PF01025.14 gi|330835129|ref|YP_004409857.1| - 0.11 12.0 3.7 3.9 6.9 0.3 2.0 1 1 1 2 2 2 0 GrpE DUF4407 PF14362.1 gi|330835129|ref|YP_004409857.1| - 0.11 11.4 0.3 0.14 11.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) MHC2-interact PF09307.5 gi|330835129|ref|YP_004409857.1| - 0.11 12.2 0.1 2.3 8.0 0.0 2.0 2 0 0 2 2 2 0 CLIP, MHC2 interacting DUF4200 PF13863.1 gi|330835129|ref|YP_004409857.1| - 0.15 12.0 2.9 0.46 10.4 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DUF1664 PF07889.7 gi|330835129|ref|YP_004409857.1| - 0.17 11.6 0.5 1.1 9.0 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) CENP-Q PF13094.1 gi|330835129|ref|YP_004409857.1| - 0.17 11.9 4.5 0.28 11.2 0.6 2.0 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit BLOC1_2 PF10046.4 gi|330835129|ref|YP_004409857.1| - 0.17 12.0 0.8 9.2 6.4 0.1 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2951 PF11166.3 gi|330835129|ref|YP_004409857.1| - 0.18 11.6 1.1 0.49 10.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) ATG16 PF08614.6 gi|330835129|ref|YP_004409857.1| - 0.19 11.4 2.6 1.6 8.5 1.9 1.9 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF2802 PF10975.3 gi|330835129|ref|YP_004409857.1| - 0.22 11.2 1.0 8.8 6.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) DUF972 PF06156.8 gi|330835129|ref|YP_004409857.1| - 0.23 11.7 2.8 8.4 6.8 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) IFP_35_N PF07334.8 gi|330835129|ref|YP_004409857.1| - 0.24 11.3 2.7 3.1 7.8 0.3 2.2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus bZIP_2 PF07716.10 gi|330835129|ref|YP_004409857.1| - 0.25 11.2 0.5 0.25 11.2 0.3 2.1 2 0 0 2 2 2 0 Basic region leucine zipper Spc24 PF08286.6 gi|330835129|ref|YP_004409857.1| - 0.36 10.5 1.9 15 5.2 0.1 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Prefoldin PF02996.12 gi|330835129|ref|YP_004409857.1| - 0.46 10.1 3.2 0.98 9.0 0.4 2.0 2 0 0 2 2 2 0 Prefoldin subunit TatC PF00902.13 gi|330835130|ref|YP_004409858.1| - 6e-48 163.0 25.3 6e-48 163.0 17.5 1.6 1 1 1 2 2 2 1 Sec-independent protein translocase protein (TatC) Myosin_N PF02736.14 gi|330835132|ref|YP_004409860.1| - 0.13 11.9 0.3 0.29 10.8 0.2 1.5 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain HTH_24 PF13412.1 gi|330835133|ref|YP_004409861.1| - 1.4e-30 104.3 2.4 1.5e-18 65.9 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330835133|ref|YP_004409861.1| - 1.6e-20 72.3 0.0 2e-12 46.4 0.0 2.2 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|330835133|ref|YP_004409861.1| - 1.6e-11 43.7 0.0 2.2e-05 24.0 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_11 PF08279.7 gi|330835133|ref|YP_004409861.1| - 1.2e-10 40.8 0.9 0.00018 21.0 0.1 2.8 3 0 0 3 3 3 2 HTH domain HTH_5 PF01022.15 gi|330835133|ref|YP_004409861.1| - 9.1e-10 38.0 0.1 0.00012 21.6 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|330835133|ref|YP_004409861.1| - 1e-09 37.8 0.0 3.3e-05 23.4 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_23 PF13384.1 gi|330835133|ref|YP_004409861.1| - 5e-08 32.3 0.0 0.00012 21.5 0.0 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_20 PF12840.2 gi|330835133|ref|YP_004409861.1| - 1.4e-07 31.1 0.0 0.00075 19.2 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_28 PF13518.1 gi|330835133|ref|YP_004409861.1| - 6.7e-07 29.1 0.0 0.0001 22.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|330835133|ref|YP_004409861.1| - 1.1e-06 28.5 0.0 0.0049 16.7 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|330835133|ref|YP_004409861.1| - 4.2e-06 26.9 0.0 0.0052 17.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|330835133|ref|YP_004409861.1| - 7.8e-06 25.8 0.0 0.065 13.2 0.0 2.5 3 0 0 3 3 2 2 Winged helix DNA-binding domain TrmB PF01978.14 gi|330835133|ref|YP_004409861.1| - 1.2e-05 24.8 0.1 0.055 13.1 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|330835133|ref|YP_004409861.1| - 7.9e-05 22.7 0.1 0.61 10.2 0.0 2.7 3 0 0 3 3 2 2 Transcriptional regulator LexA_DNA_bind PF01726.11 gi|330835133|ref|YP_004409861.1| - 0.0001 21.8 0.1 0.036 13.6 0.0 2.4 2 0 0 2 2 2 1 LexA DNA binding domain HxlR PF01638.12 gi|330835133|ref|YP_004409861.1| - 0.00011 21.8 0.2 0.19 11.3 0.0 2.7 3 0 0 3 3 3 2 HxlR-like helix-turn-helix HTH_Mga PF08280.6 gi|330835133|ref|YP_004409861.1| - 0.00019 21.1 0.3 0.079 12.7 0.0 2.3 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.7 gi|330835133|ref|YP_004409861.1| - 0.00033 20.1 0.2 0.17 11.4 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain FeoC PF09012.5 gi|330835133|ref|YP_004409861.1| - 0.00042 19.9 0.0 0.024 14.3 0.0 2.3 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_30 PF13556.1 gi|330835133|ref|YP_004409861.1| - 0.0015 18.0 0.0 0.0042 16.6 0.0 1.7 2 0 0 2 2 1 1 PucR C-terminal helix-turn-helix domain EAP30 PF04157.11 gi|330835133|ref|YP_004409861.1| - 0.0016 17.6 0.0 0.12 11.4 0.0 2.2 2 0 0 2 2 2 1 EAP30/Vps36 family Sigma70_r4_2 PF08281.7 gi|330835133|ref|YP_004409861.1| - 0.0024 17.3 0.2 0.98 8.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 RepL PF05732.6 gi|330835133|ref|YP_004409861.1| - 0.0028 16.9 0.0 0.8 8.9 0.0 2.2 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_DeoR PF08220.7 gi|330835133|ref|YP_004409861.1| - 0.003 17.0 0.0 0.37 10.3 0.0 2.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_9 PF08221.6 gi|330835133|ref|YP_004409861.1| - 0.0046 16.8 0.1 1.3 8.9 0.1 2.6 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_8 PF02954.14 gi|330835133|ref|YP_004409861.1| - 0.0078 15.7 0.5 0.035 13.6 0.0 2.4 3 0 0 3 3 2 1 Bacterial regulatory protein, Fis family HTH_Crp_2 PF13545.1 gi|330835133|ref|YP_004409861.1| - 0.0084 15.8 0.0 0.1 12.4 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|330835133|ref|YP_004409861.1| - 0.015 14.7 0.4 3.6 7.1 0.0 2.5 2 0 0 2 2 2 0 TFIIE alpha subunit TetR_N PF00440.18 gi|330835133|ref|YP_004409861.1| - 0.016 14.8 0.0 0.045 13.3 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.22 gi|330835133|ref|YP_004409861.1| - 0.018 14.7 0.0 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_39 PF14090.1 gi|330835133|ref|YP_004409861.1| - 0.028 13.8 0.0 0.35 10.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|330835133|ref|YP_004409861.1| - 0.031 13.7 0.0 2 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|330835133|ref|YP_004409861.1| - 0.035 13.8 0.2 0.23 11.2 0.0 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain B-block_TFIIIC PF04182.7 gi|330835133|ref|YP_004409861.1| - 0.036 13.9 0.0 8.7 6.2 0.0 2.5 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC Put_DNA-bind_N PF06971.8 gi|330835133|ref|YP_004409861.1| - 0.039 13.7 0.4 2.7 7.8 0.6 2.9 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_36 PF13730.1 gi|330835133|ref|YP_004409861.1| - 0.059 13.4 0.2 10 6.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|330835133|ref|YP_004409861.1| - 0.083 12.7 0.5 2 8.3 0.0 3.1 4 0 0 4 4 3 0 Helix-turn-helix HTH_IclR PF09339.5 gi|330835133|ref|YP_004409861.1| - 0.11 12.0 0.0 16 5.2 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330835133|ref|YP_004409861.1| - 0.13 11.5 0.3 3 7.2 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 SWIM PF04434.12 gi|330835136|ref|YP_004409864.1| - 0.00023 20.5 0.5 0.0013 18.1 0.1 1.9 2 0 0 2 2 2 1 SWIM zinc finger DUF929 PF06053.6 gi|330835137|ref|YP_004409865.1| - 6.1e-44 149.9 11.1 1.2e-43 149.0 7.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF929) Thioredoxin_7 PF13899.1 gi|330835137|ref|YP_004409865.1| - 0.0011 18.9 0.0 0.0023 17.9 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|330835137|ref|YP_004409865.1| - 0.0014 18.3 0.0 0.0028 17.3 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330835137|ref|YP_004409865.1| - 0.02 14.4 0.0 0.041 13.4 0.0 1.4 1 0 0 1 1 1 0 Redoxin DUF1082 PF06449.6 gi|330835137|ref|YP_004409865.1| - 0.044 13.6 0.1 0.12 12.2 0.1 1.7 1 0 0 1 1 1 0 Mitochondrial domain of unknown function (DUF1082) zf-ribbon_3 PF13248.1 gi|330835137|ref|YP_004409865.1| - 0.089 12.0 0.1 0.15 11.3 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Thioredoxin_2 PF13098.1 gi|330835137|ref|YP_004409865.1| - 0.099 12.8 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain PsbI PF02532.9 gi|330835138|ref|YP_004409866.1| - 0.0051 16.4 6.2 0.96 9.1 0.4 2.8 2 0 0 2 2 2 2 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) DUF2186 PF09952.4 gi|330835138|ref|YP_004409866.1| - 0.059 13.6 0.0 18 5.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2186) Flg_bbr_C PF06429.8 gi|330835138|ref|YP_004409866.1| - 3.5 7.6 4.6 47 3.9 0.2 3.0 4 0 0 4 4 4 0 Flagellar basal body rod FlgEFG protein C-terminal Fer4_10 PF13237.1 gi|330835139|ref|YP_004409867.1| - 4.6e-06 26.3 5.3 8.5e-06 25.4 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835139|ref|YP_004409867.1| - 0.0001 22.4 6.2 0.00034 20.7 4.5 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330835139|ref|YP_004409867.1| - 0.00068 19.6 3.9 0.012 15.5 3.7 2.2 2 2 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835139|ref|YP_004409867.1| - 0.0018 18.6 10.3 0.0027 18.0 5.7 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330835139|ref|YP_004409867.1| - 0.013 15.3 2.4 0.025 14.4 1.7 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835139|ref|YP_004409867.1| - 0.014 15.3 9.1 0.024 14.5 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330835139|ref|YP_004409867.1| - 0.019 14.8 9.1 0.31 11.0 1.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330835139|ref|YP_004409867.1| - 0.11 12.8 7.5 8.1 6.8 5.4 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835139|ref|YP_004409867.1| - 0.14 11.7 10.4 0.53 9.9 0.4 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330835139|ref|YP_004409867.1| - 0.18 11.4 4.4 0.53 9.9 3.0 1.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.1 gi|330835139|ref|YP_004409867.1| - 0.2 11.5 6.1 0.56 10.1 4.3 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835139|ref|YP_004409867.1| - 0.34 11.6 4.1 9.7 7.0 0.5 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|330835139|ref|YP_004409867.1| - 9.6 6.7 12.1 1.1 9.7 0.5 2.6 2 1 1 3 3 3 0 4Fe-4S dicluster domain VKOR PF07884.9 gi|330835140|ref|YP_004409868.1| - 6.9e-23 81.0 11.9 9.5e-23 80.5 8.3 1.2 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PQQ_2 PF13360.1 gi|330835141|ref|YP_004409869.1| - 9.3e-37 126.7 2.9 1.1e-13 51.1 0.0 3.1 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|330835141|ref|YP_004409869.1| - 2.7e-21 73.9 4.4 0.003 16.9 0.0 7.4 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_3 PF13570.1 gi|330835141|ref|YP_004409869.1| - 1e-05 25.6 23.3 0.03 14.6 0.0 8.1 8 1 0 8 8 8 3 PQQ-like domain ABC_tran PF00005.22 gi|330835142|ref|YP_004409870.1| - 1.7e-13 51.0 0.1 5.5e-12 46.1 0.1 2.3 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835142|ref|YP_004409870.1| - 1.9e-12 47.7 0.2 6.8e-07 29.5 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330835142|ref|YP_004409870.1| - 1.5e-10 40.7 0.2 2.6e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330835142|ref|YP_004409870.1| - 6.2e-09 36.4 0.1 8.3e-09 36.0 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|330835142|ref|YP_004409870.1| - 1.5e-07 30.8 0.0 0.00098 18.2 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|330835142|ref|YP_004409870.1| - 2e-06 27.9 0.0 3.5e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|330835142|ref|YP_004409870.1| - 6.2e-05 21.6 0.1 0.0041 15.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|330835142|ref|YP_004409870.1| - 0.00017 21.0 0.0 0.00036 19.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|330835142|ref|YP_004409870.1| - 0.00017 21.4 0.0 0.0043 16.9 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|330835142|ref|YP_004409870.1| - 0.00043 19.8 0.0 0.00046 19.7 0.0 1.2 1 1 0 1 1 1 1 AAA-like domain NACHT PF05729.7 gi|330835142|ref|YP_004409870.1| - 0.001 18.7 0.1 0.0047 16.6 0.0 2.0 2 0 0 2 2 2 1 NACHT domain ABC_ATPase PF09818.4 gi|330835142|ref|YP_004409870.1| - 0.0016 17.0 0.1 0.0045 15.6 0.0 1.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class MobB PF03205.9 gi|330835142|ref|YP_004409870.1| - 0.0059 16.3 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330835142|ref|YP_004409870.1| - 0.006 16.7 0.1 0.011 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|330835142|ref|YP_004409870.1| - 0.0067 16.1 0.1 0.014 15.0 0.1 1.6 1 1 0 1 1 1 1 NTPase Miro PF08477.8 gi|330835142|ref|YP_004409870.1| - 0.0085 16.5 0.0 0.033 14.6 0.0 1.9 1 1 1 2 2 2 1 Miro-like protein AAA_19 PF13245.1 gi|330835142|ref|YP_004409870.1| - 0.0087 15.7 0.0 0.015 15.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|330835142|ref|YP_004409870.1| - 0.014 14.9 0.1 0.024 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|330835142|ref|YP_004409870.1| - 0.018 14.1 0.0 0.039 13.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|330835142|ref|YP_004409870.1| - 0.019 14.3 0.4 0.048 13.0 0.1 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|330835142|ref|YP_004409870.1| - 0.021 14.6 0.0 0.046 13.5 0.0 1.6 1 1 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.13 gi|330835142|ref|YP_004409870.1| - 0.023 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|330835142|ref|YP_004409870.1| - 0.027 14.1 0.0 0.064 12.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|330835142|ref|YP_004409870.1| - 0.027 14.1 0.3 0.048 13.3 0.2 1.6 1 1 0 1 1 1 0 Archaeal ATPase DUF3584 PF12128.3 gi|330835142|ref|YP_004409870.1| - 0.029 11.7 0.1 0.039 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF1341 PF07071.6 gi|330835142|ref|YP_004409870.1| - 0.063 12.8 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1341) AAA PF00004.24 gi|330835142|ref|YP_004409870.1| - 0.072 13.2 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.12 gi|330835142|ref|YP_004409870.1| - 0.081 12.7 1.2 0.25 11.1 0.1 2.1 2 1 0 2 2 2 0 Domain of unknown function DUF87 DUF258 PF03193.11 gi|330835142|ref|YP_004409870.1| - 0.14 11.3 0.0 0.2 10.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FecCD PF01032.13 gi|330835143|ref|YP_004409871.1| - 8.4e-65 218.6 30.5 1e-64 218.3 21.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|330835143|ref|YP_004409871.1| - 0.0019 17.5 23.3 0.003 16.9 16.1 1.4 1 0 0 1 1 1 1 ABC 3 transport family Yip1 PF04893.12 gi|330835143|ref|YP_004409871.1| - 0.0046 16.4 12.3 0.0046 16.4 8.5 3.4 1 1 2 3 3 3 1 Yip1 domain MtrG PF04210.8 gi|330835143|ref|YP_004409871.1| - 0.11 12.1 0.8 0.38 10.4 0.5 1.9 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit G Peripla_BP_2 PF01497.13 gi|330835144|ref|YP_004409872.1| - 7.1e-17 61.3 0.0 8.7e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Med21 PF11221.3 gi|330835144|ref|YP_004409872.1| - 0.034 14.1 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 Subunit 21 of Mediator complex TrkA_N PF02254.13 gi|330835145|ref|YP_004409873.1| - 1.1e-17 64.1 0.3 1.9e-17 63.3 0.2 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|330835145|ref|YP_004409873.1| - 1.7e-05 24.3 0.1 0.0001 21.7 0.0 2.2 2 0 0 2 2 2 1 TrkA-C domain Ion_trans_2 PF07885.11 gi|330835145|ref|YP_004409873.1| - 0.027 14.1 5.3 0.053 13.2 3.7 1.5 1 0 0 1 1 1 0 Ion channel HTH_24 PF13412.1 gi|330835146|ref|YP_004409874.1| - 7.7e-05 22.0 0.0 0.00013 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330835146|ref|YP_004409874.1| - 0.00011 21.8 0.0 0.00018 21.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|330835146|ref|YP_004409874.1| - 0.0041 17.4 0.0 0.0072 16.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|330835146|ref|YP_004409874.1| - 0.0042 17.1 0.1 0.0096 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330835146|ref|YP_004409874.1| - 0.0053 16.3 0.0 0.0098 15.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|330835146|ref|YP_004409874.1| - 0.033 13.9 0.0 0.089 12.6 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_45 PF14947.1 gi|330835146|ref|YP_004409874.1| - 0.048 13.4 0.0 0.088 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix HemN_C PF06969.11 gi|330835146|ref|YP_004409874.1| - 0.081 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_11 PF08279.7 gi|330835146|ref|YP_004409874.1| - 0.087 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_psq PF05225.11 gi|330835146|ref|YP_004409874.1| - 0.1 12.1 0.0 0.24 10.9 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Rrf2 PF02082.15 gi|330835146|ref|YP_004409874.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator MarR_2 PF12802.2 gi|330835146|ref|YP_004409874.1| - 0.12 12.0 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family MarR PF01047.17 gi|330835146|ref|YP_004409874.1| - 0.13 11.9 0.0 0.57 9.9 0.0 1.9 2 0 0 2 2 2 0 MarR family NrfD PF03916.9 gi|330835148|ref|YP_004409876.1| - 7.2e-11 42.0 31.7 4.1e-09 36.2 19.5 2.3 2 1 0 2 2 2 2 Polysulphide reductase, NrfD DUF4293 PF14126.1 gi|330835148|ref|YP_004409876.1| - 1.1 9.1 8.7 0.059 13.2 1.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4293) TPR_11 PF13414.1 gi|330835149|ref|YP_004409877.1| - 1.5e-23 82.1 16.2 8.5e-08 31.7 0.8 4.9 2 2 3 6 6 6 5 TPR repeat TPR_19 PF14559.1 gi|330835149|ref|YP_004409877.1| - 1.2e-21 76.8 2.9 3.6e-05 23.9 0.0 4.7 3 2 2 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|330835149|ref|YP_004409877.1| - 3e-20 72.3 4.8 7.6e-06 26.4 0.6 4.9 2 2 2 5 5 5 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|330835149|ref|YP_004409877.1| - 1.5e-16 59.1 5.7 0.21 11.8 0.0 7.4 7 1 0 7 7 7 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330835149|ref|YP_004409877.1| - 1.8e-14 52.3 16.9 0.032 14.1 0.0 7.7 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330835149|ref|YP_004409877.1| - 4.9e-14 51.5 1.1 0.0034 17.8 0.1 6.4 2 1 5 7 7 7 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|330835149|ref|YP_004409877.1| - 9.2e-13 48.1 8.6 0.0013 18.8 0.1 4.1 1 1 3 4 4 4 4 Anaphase-promoting complex, cyclosome, subunit 3 TPR_8 PF13181.1 gi|330835149|ref|YP_004409877.1| - 6.1e-11 41.2 21.6 0.077 12.8 0.0 7.6 6 2 2 8 8 8 5 Tetratricopeptide repeat TPR_9 PF13371.1 gi|330835149|ref|YP_004409877.1| - 2e-10 40.3 0.1 0.00042 20.1 0.0 4.0 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330835149|ref|YP_004409877.1| - 7.9e-10 37.9 17.1 0.025 14.2 0.0 7.9 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330835149|ref|YP_004409877.1| - 4.6e-09 36.0 16.5 0.0034 17.2 0.3 5.7 2 2 3 5 5 5 3 Tetratricopeptide repeat NARP1 PF12569.3 gi|330835149|ref|YP_004409877.1| - 3.8e-08 32.5 5.4 0.00026 19.8 0.1 3.9 1 1 3 4 4 4 3 NMDA receptor-regulated protein 1 TPR_15 PF13429.1 gi|330835149|ref|YP_004409877.1| - 0.00029 19.9 2.3 0.0023 17.0 0.7 2.5 1 1 2 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.1 gi|330835149|ref|YP_004409877.1| - 0.00039 20.6 7.3 33 5.2 0.1 6.5 7 0 0 7 7 6 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|330835149|ref|YP_004409877.1| - 0.00067 19.7 1.9 0.34 11.0 0.1 4.2 3 2 2 5 5 5 1 Tetratricopeptide repeat ChAPs PF09295.5 gi|330835149|ref|YP_004409877.1| - 0.0014 17.5 0.1 0.35 9.5 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) Coatomer_E PF04733.9 gi|330835149|ref|YP_004409877.1| - 0.024 13.8 3.5 6.7 5.8 0.0 3.8 1 1 2 4 4 4 0 Coatomer epsilon subunit Fis1_TPR_C PF14853.1 gi|330835149|ref|YP_004409877.1| - 0.078 12.8 7.5 12 5.8 0.1 4.4 3 1 2 5 5 4 0 Fis1 C-terminal tetratricopeptide repeat TPR_7 PF13176.1 gi|330835149|ref|YP_004409877.1| - 0.37 10.7 5.0 8.3 6.4 0.0 4.9 6 1 1 7 7 6 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|330835149|ref|YP_004409877.1| - 0.69 9.9 4.5 26 4.9 0.2 4.1 4 0 0 4 4 3 0 Tetratricopeptide repeat Molybdopterin PF00384.17 gi|330835150|ref|YP_004409878.1| - 1.4e-05 24.0 0.0 0.0005 18.9 0.0 2.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TAT_signal PF10518.4 gi|330835150|ref|YP_004409878.1| - 0.0042 16.9 0.4 0.013 15.4 0.3 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.11 gi|330835150|ref|YP_004409878.1| - 0.045 13.5 0.1 0.097 12.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.1 gi|330835151|ref|YP_004409879.1| - 3.6e-23 81.2 7.6 3.6e-23 81.2 5.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835151|ref|YP_004409879.1| - 5.1e-13 49.0 20.1 7.5e-08 32.5 4.3 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835151|ref|YP_004409879.1| - 5.1e-12 45.9 16.1 1.9e-06 28.1 2.6 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835151|ref|YP_004409879.1| - 1.5e-08 34.3 16.7 0.00055 19.6 3.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330835151|ref|YP_004409879.1| - 0.0001 22.3 27.8 0.038 14.3 1.3 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330835151|ref|YP_004409879.1| - 0.00011 21.8 26.9 0.041 13.8 0.3 4.6 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835151|ref|YP_004409879.1| - 0.00013 21.9 16.6 0.00048 20.0 3.0 3.1 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835151|ref|YP_004409879.1| - 0.00045 20.5 10.0 0.65 10.4 0.1 3.6 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330835151|ref|YP_004409879.1| - 0.0013 19.1 33.8 0.053 14.1 4.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|330835151|ref|YP_004409879.1| - 0.0038 16.7 26.1 0.011 15.3 0.6 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835151|ref|YP_004409879.1| - 0.027 14.2 19.3 0.44 10.4 0.2 3.7 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330835151|ref|YP_004409879.1| - 0.093 13.0 20.1 0.55 10.6 0.2 3.8 2 1 3 5 5 5 0 4Fe-4S dicluster domain Fer4_20 PF14691.1 gi|330835151|ref|YP_004409879.1| - 2.7 7.6 16.8 0.24 11.0 1.2 3.3 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|330835151|ref|YP_004409879.1| - 4.3 7.3 27.9 0.34 10.8 2.6 5.0 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330835151|ref|YP_004409879.1| - 7 7.2 17.2 0.35 11.4 1.2 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Nitrate_red_del PF02613.10 gi|330835152|ref|YP_004409880.1| - 3.9e-10 39.6 0.0 5.5e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit Fer4_7 PF12838.2 gi|330835153|ref|YP_004409881.1| - 1.5e-08 34.8 20.2 0.0017 18.7 1.1 3.6 4 0 0 4 4 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835153|ref|YP_004409881.1| - 8.9e-06 25.4 24.3 0.0067 16.2 1.1 3.6 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835153|ref|YP_004409881.1| - 2.3e-05 23.7 31.3 3.5e-05 23.2 2.9 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835153|ref|YP_004409881.1| - 2.4e-05 24.5 20.6 0.011 15.9 3.0 3.8 3 2 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835153|ref|YP_004409881.1| - 5e-05 22.9 10.5 0.00062 19.5 3.3 4.8 6 0 0 6 6 5 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|330835153|ref|YP_004409881.1| - 0.00018 21.9 13.0 0.062 13.8 1.0 4.8 4 0 0 4 4 4 1 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|330835153|ref|YP_004409881.1| - 0.00041 20.1 2.0 0.00041 20.1 1.4 5.3 6 0 0 6 6 6 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835153|ref|YP_004409881.1| - 0.0027 17.5 6.9 0.0027 17.5 4.8 3.2 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835153|ref|YP_004409881.1| - 0.0058 17.0 8.7 0.29 11.5 0.2 3.5 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|330835153|ref|YP_004409881.1| - 0.039 13.7 2.5 13 5.6 0.0 3.5 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_8 PF13183.1 gi|330835153|ref|YP_004409881.1| - 0.045 13.7 18.0 0.17 11.9 5.6 3.8 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330835153|ref|YP_004409881.1| - 0.08 13.3 19.1 0.15 12.4 0.1 4.4 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330835153|ref|YP_004409881.1| - 7.3 7.0 16.4 5.3 7.5 1.5 4.4 4 0 0 4 4 4 0 4Fe-4S single cluster domain HAD_2 PF13419.1 gi|330835154|ref|YP_004409882.1| - 0.0021 18.3 0.0 0.0026 17.9 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DUF2299 PF10061.4 gi|330835155|ref|YP_004409883.1| - 1e-42 144.8 0.0 1.1e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) MS_channel PF00924.13 gi|330835156|ref|YP_004409884.1| - 8.8e-30 103.5 0.2 8.8e-30 103.5 0.1 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2303 PF10065.4 gi|330835156|ref|YP_004409884.1| - 0.1 11.4 0.0 0.14 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2303) DUF4131 PF13567.1 gi|330835156|ref|YP_004409884.1| - 2.1 7.7 6.7 3.6 6.9 4.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF217 PF02697.9 gi|330835157|ref|YP_004409885.1| - 0.089 13.0 0.3 0.25 11.6 0.2 1.8 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 GTPase_Cys_C PF12631.2 gi|330835157|ref|YP_004409885.1| - 0.14 12.5 0.2 0.84 10.0 0.0 2.1 2 1 1 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF770 PF05591.7 gi|330835157|ref|YP_004409885.1| - 0.19 11.2 1.4 13 5.3 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF770) Band_7 PF01145.20 gi|330835158|ref|YP_004409886.1| - 3.9e-25 88.8 0.1 8.6e-25 87.6 0.0 1.5 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|330835158|ref|YP_004409886.1| - 2.5e-09 36.9 0.1 9.8e-09 35.0 0.1 1.8 1 1 0 1 1 1 1 SPFH domain-Band 7 family SHOCT PF09851.4 gi|330835160|ref|YP_004409888.1| - 0.32 10.5 3.2 0.65 9.5 2.2 1.6 1 0 0 1 1 1 0 Short C-terminal domain DUF2129 PF09902.4 gi|330835161|ref|YP_004409889.1| - 0.046 13.5 2.4 3.5 7.4 0.3 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2129) Vps4_C PF09336.5 gi|330835161|ref|YP_004409889.1| - 0.12 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain SoxE PF06525.6 gi|330835162|ref|YP_004409890.1| - 5.1e-73 244.5 9.7 6e-73 244.3 6.7 1.0 1 0 0 1 1 1 1 Sulfocyanin (SoxE) DUF4097 PF13349.1 gi|330835162|ref|YP_004409890.1| - 0.033 13.7 3.1 0.47 9.9 2.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) Aminotran_5 PF00266.14 gi|330835164|ref|YP_004409892.1| - 3e-39 134.8 0.0 3.8e-39 134.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|330835164|ref|YP_004409892.1| - 0.0022 16.3 0.1 0.0031 15.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NAD_binding_7 PF13241.1 gi|330835164|ref|YP_004409892.1| - 0.013 15.6 0.1 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding 7TM_GPCR_Srh PF10318.4 gi|330835165|ref|YP_004409893.1| - 0.33 9.6 2.9 0.36 9.5 2.0 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srh Oxidored_q4 PF00507.14 gi|330835165|ref|YP_004409893.1| - 3.6 7.4 5.8 4.6 7.1 4.0 1.3 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Aconitase_C PF00694.14 gi|330835166|ref|YP_004409894.1| - 1.3e-22 80.3 0.0 1.8e-22 79.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|330835166|ref|YP_004409894.1| - 0.0018 17.7 1.7 0.48 9.8 0.1 2.2 1 1 1 2 2 2 2 Aconitate hydratase 2 N-terminus DUF1370 PF07114.6 gi|330835166|ref|YP_004409894.1| - 0.013 14.7 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1370) PA PF02225.17 gi|330835166|ref|YP_004409894.1| - 0.082 12.6 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 PA domain PEP-utilizers PF00391.18 gi|330835166|ref|YP_004409894.1| - 0.084 12.4 1.0 0.67 9.5 0.5 2.5 1 1 1 2 2 2 0 PEP-utilising enzyme, mobile domain Sipho_tail PF05709.6 gi|330835166|ref|YP_004409894.1| - 0.12 11.4 0.0 0.13 11.3 0.0 1.0 1 0 0 1 1 1 0 Phage tail protein Aconitase PF00330.15 gi|330835167|ref|YP_004409895.1| - 1e-58 198.9 3.0 8.8e-38 129.9 0.1 2.5 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|330835167|ref|YP_004409895.1| - 0.022 13.3 0.0 0.039 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF521) UPF0547 PF10571.4 gi|330835168|ref|YP_004409896.1| - 1.3e-06 27.9 2.2 1.6e-06 27.7 1.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|330835168|ref|YP_004409896.1| - 0.00081 18.5 0.6 0.079 12.1 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-TFIIB PF13453.1 gi|330835168|ref|YP_004409896.1| - 0.0026 16.9 0.5 0.0032 16.6 0.3 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-C2H2_4 PF13894.1 gi|330835168|ref|YP_004409896.1| - 0.0071 16.6 0.6 0.34 11.3 0.1 2.1 2 0 0 2 2 2 1 C2H2-type zinc finger ADK_lid PF05191.9 gi|330835168|ref|YP_004409896.1| - 0.0085 15.7 5.2 0.82 9.3 0.6 2.2 2 0 0 2 2 2 2 Adenylate kinase, active site lid zf-C4_Topoisom PF01396.14 gi|330835168|ref|YP_004409896.1| - 0.012 15.0 1.8 1.2 8.6 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF329 PF03884.9 gi|330835168|ref|YP_004409896.1| - 0.017 14.6 1.3 3.5 7.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) DZR PF12773.2 gi|330835168|ref|YP_004409896.1| - 0.028 14.2 2.2 0.074 12.8 1.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon YhfH PF14149.1 gi|330835168|ref|YP_004409896.1| - 0.03 14.1 0.4 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 YhfH-like protein zf-C2H2 PF00096.21 gi|330835168|ref|YP_004409896.1| - 0.033 14.5 3.3 0.2 12.0 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_5 PF13719.1 gi|330835168|ref|YP_004409896.1| - 0.035 13.7 5.1 0.14 11.7 3.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Elf1 PF05129.8 gi|330835168|ref|YP_004409896.1| - 0.037 13.7 0.5 0.038 13.6 0.3 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.1 gi|330835168|ref|YP_004409896.1| - 0.044 13.4 4.7 0.22 11.2 3.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|330835168|ref|YP_004409896.1| - 0.055 13.4 0.2 3.1 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Opy2 PF09463.5 gi|330835168|ref|YP_004409896.1| - 0.063 13.3 1.9 6.2 6.9 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein HypA PF01155.14 gi|330835168|ref|YP_004409896.1| - 0.069 12.8 0.3 0.076 12.6 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-FPG_IleRS PF06827.9 gi|330835168|ref|YP_004409896.1| - 0.073 12.7 1.4 1.2 8.7 1.6 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zinc_ribbon_2 PF13240.1 gi|330835168|ref|YP_004409896.1| - 0.075 12.5 3.8 0.59 9.6 2.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_5 PF14634.1 gi|330835168|ref|YP_004409896.1| - 0.08 12.6 1.6 3.9 7.2 0.4 2.1 2 0 0 2 2 2 0 zinc-RING finger domain zf-AN1 PF01428.11 gi|330835168|ref|YP_004409896.1| - 0.085 12.7 0.8 0.21 11.4 0.5 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger zf-C3HC4_3 PF13920.1 gi|330835168|ref|YP_004409896.1| - 0.098 12.3 6.2 0.6 9.8 0.6 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) eIF-5_eIF-2B PF01873.12 gi|330835168|ref|YP_004409896.1| - 0.099 12.3 0.9 0.11 12.0 0.6 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.6 gi|330835168|ref|YP_004409896.1| - 0.11 12.1 2.5 0.24 11.1 1.7 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF2256 PF10013.4 gi|330835168|ref|YP_004409896.1| - 0.12 12.1 2.9 0.88 9.3 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) DUF35_N PF12172.3 gi|330835168|ref|YP_004409896.1| - 0.13 12.2 0.6 2.4 8.1 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-H2C2_2 PF13465.1 gi|330835168|ref|YP_004409896.1| - 0.13 12.5 3.0 0.66 10.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_6 PF13912.1 gi|330835168|ref|YP_004409896.1| - 0.16 11.9 3.0 1.4 8.9 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|330835168|ref|YP_004409896.1| - 0.16 11.2 4.2 2.5 7.4 0.2 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|330835168|ref|YP_004409896.1| - 0.19 11.4 4.1 1.6 8.4 3.0 1.9 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|330835168|ref|YP_004409896.1| - 0.22 11.3 4.4 1.5 8.6 0.4 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Med27 PF11571.3 gi|330835168|ref|YP_004409896.1| - 0.22 11.6 0.9 4.1 7.5 0.0 2.0 2 0 0 2 2 2 0 Mediator complex subunit 27 Nudix_N_2 PF14803.1 gi|330835168|ref|YP_004409896.1| - 0.24 11.1 2.4 5.5 6.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|330835168|ref|YP_004409896.1| - 0.3 11.1 5.6 2.1 8.4 0.5 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc-ribbons_6 PF07191.7 gi|330835168|ref|YP_004409896.1| - 0.34 10.7 1.7 1.3 8.8 1.2 1.8 1 1 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1595 PF12760.2 gi|330835168|ref|YP_004409896.1| - 0.35 10.7 3.5 1.2 9.0 0.1 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.1 gi|330835168|ref|YP_004409896.1| - 0.37 10.7 2.0 1.6 8.7 0.0 1.9 1 1 1 2 2 2 0 CpXC protein zf-C2HC_2 PF13913.1 gi|330835168|ref|YP_004409896.1| - 0.4 10.4 4.1 1.7 8.3 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type DUF3039 PF11238.3 gi|330835168|ref|YP_004409896.1| - 0.43 10.0 2.1 8.4 5.9 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) zf-RING_3 PF14369.1 gi|330835168|ref|YP_004409896.1| - 0.48 10.4 3.2 2.6 8.1 2.3 1.9 1 1 1 2 2 2 0 zinc-finger TFIIS_C PF01096.13 gi|330835168|ref|YP_004409896.1| - 0.49 10.0 2.2 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.1 gi|330835168|ref|YP_004409896.1| - 0.54 10.5 3.6 2.1 8.6 2.5 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-LITAF-like PF10601.4 gi|330835168|ref|YP_004409896.1| - 0.55 10.1 3.1 9.3 6.1 0.1 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2225 PF09986.4 gi|330835168|ref|YP_004409896.1| - 0.76 9.1 2.5 3.7 6.9 1.8 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) DNA_ligase_ZBD PF03119.11 gi|330835168|ref|YP_004409896.1| - 0.82 9.4 5.0 6.3 6.5 0.8 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Rubredoxin PF00301.15 gi|330835168|ref|YP_004409896.1| - 0.84 9.5 4.8 13 5.7 3.3 2.0 1 1 0 1 1 1 0 Rubredoxin DUF2685 PF10886.3 gi|330835168|ref|YP_004409896.1| - 0.93 9.5 3.6 1.2 9.1 2.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2685) zf-MYND PF01753.13 gi|330835168|ref|YP_004409896.1| - 1.7 8.5 4.5 4.6 7.1 2.9 1.7 1 1 1 2 2 2 0 MYND finger Zn-ribbon_8 PF09723.5 gi|330835168|ref|YP_004409896.1| - 1.9 8.4 6.4 46 4.0 0.4 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_2 PF13639.1 gi|330835168|ref|YP_004409896.1| - 2.3 8.1 5.2 8.6 6.2 3.6 1.8 1 1 1 2 2 2 0 Ring finger domain Zn_Tnp_IS1 PF03811.8 gi|330835168|ref|YP_004409896.1| - 3.9 7.0 6.5 7.4 6.1 0.4 2.2 1 1 1 2 2 2 0 InsA N-terminal domain Rad50_zn_hook PF04423.9 gi|330835168|ref|YP_004409896.1| - 4 6.9 7.4 2.2 7.7 0.8 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif HTH_24 PF13412.1 gi|330835169|ref|YP_004409897.1| - 2.3e-27 94.0 0.0 1.4e-13 49.9 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|330835169|ref|YP_004409897.1| - 7.3e-18 63.8 0.0 2.7e-09 36.4 0.0 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|330835169|ref|YP_004409897.1| - 3.7e-11 42.5 0.0 8.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|330835169|ref|YP_004409897.1| - 9.1e-11 41.3 0.1 5.5e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.15 gi|330835169|ref|YP_004409897.1| - 9.7e-10 37.9 0.0 2.2e-06 27.2 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|330835169|ref|YP_004409897.1| - 4.7e-09 35.7 0.1 4e-06 26.3 0.0 2.3 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|330835169|ref|YP_004409897.1| - 1.1e-08 34.6 1.7 0.00012 21.7 0.1 3.2 2 1 1 3 3 3 2 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|330835169|ref|YP_004409897.1| - 2.3e-07 30.4 0.0 3.1e-05 23.6 0.0 2.4 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|330835169|ref|YP_004409897.1| - 7.7e-07 28.4 0.1 0.0067 15.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_23 PF13384.1 gi|330835169|ref|YP_004409897.1| - 1.1e-06 28.1 0.0 0.0042 16.6 0.0 2.6 2 0 0 2 2 2 2 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|330835169|ref|YP_004409897.1| - 1.6e-06 27.9 0.1 0.024 14.5 0.0 2.5 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.7 gi|330835169|ref|YP_004409897.1| - 2.7e-06 26.8 0.0 1.6e-05 24.3 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TFIIE_alpha PF02002.12 gi|330835169|ref|YP_004409897.1| - 8.1e-06 25.2 0.5 0.0022 17.4 0.1 2.8 3 0 0 3 3 3 1 TFIIE alpha subunit GerE PF00196.14 gi|330835169|ref|YP_004409897.1| - 4.1e-05 22.8 0.2 0.29 10.4 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family HTH_Mga PF08280.6 gi|330835169|ref|YP_004409897.1| - 6.5e-05 22.6 0.0 0.0058 16.3 0.0 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.7 gi|330835169|ref|YP_004409897.1| - 7.9e-05 22.1 0.0 0.071 12.7 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|330835169|ref|YP_004409897.1| - 0.0001 22.3 0.4 0.00039 20.4 0.1 2.0 2 0 0 2 2 2 1 Transposase RepL PF05732.6 gi|330835169|ref|YP_004409897.1| - 0.00026 20.2 0.9 0.038 13.1 0.0 2.6 3 1 0 3 3 2 1 Firmicute plasmid replication protein (RepL) HTH_12 PF08461.5 gi|330835169|ref|YP_004409897.1| - 0.00027 20.5 0.7 0.15 11.7 0.0 2.6 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_34 PF13601.1 gi|330835169|ref|YP_004409897.1| - 0.00034 20.5 0.0 0.029 14.3 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|330835169|ref|YP_004409897.1| - 0.00048 20.1 0.1 0.14 12.2 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_27 PF13463.1 gi|330835169|ref|YP_004409897.1| - 0.00057 20.1 0.0 0.93 9.8 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|330835169|ref|YP_004409897.1| - 0.0015 18.4 0.0 0.24 11.4 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|330835169|ref|YP_004409897.1| - 0.0018 18.0 0.1 0.98 9.3 0.0 2.4 2 0 0 2 2 2 1 B-block binding subunit of TFIIIC NUMOD1 PF07453.8 gi|330835169|ref|YP_004409897.1| - 0.0019 17.9 0.1 8.1 6.4 0.0 3.7 3 0 0 3 3 3 0 NUMOD1 domain HTH_38 PF13936.1 gi|330835169|ref|YP_004409897.1| - 0.0022 17.4 0.0 0.61 9.6 0.0 3.0 3 0 0 3 3 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330835169|ref|YP_004409897.1| - 0.0024 17.1 0.0 0.37 10.1 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 DUF4423 PF14394.1 gi|330835169|ref|YP_004409897.1| - 0.0035 16.9 0.1 0.83 9.1 0.0 2.9 3 1 0 3 3 2 1 Domain of unknown function (DUF4423) Cullin PF00888.17 gi|330835169|ref|YP_004409897.1| - 0.0037 15.8 0.0 0.019 13.5 0.0 1.9 2 0 0 2 2 2 1 Cullin family Ribosomal_S25 PF03297.10 gi|330835169|ref|YP_004409897.1| - 0.0043 17.0 0.2 0.015 15.2 0.0 1.9 2 0 0 2 2 2 1 S25 ribosomal protein DUF1902 PF08972.6 gi|330835169|ref|YP_004409897.1| - 0.0053 16.2 0.1 0.13 11.8 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF1902) LexA_DNA_bind PF01726.11 gi|330835169|ref|YP_004409897.1| - 0.0057 16.1 0.1 0.93 9.1 0.0 2.5 2 1 0 2 2 2 1 LexA DNA binding domain FeoC PF09012.5 gi|330835169|ref|YP_004409897.1| - 0.011 15.4 0.1 3.9 7.2 0.0 2.3 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_30 PF13556.1 gi|330835169|ref|YP_004409897.1| - 0.011 15.2 0.1 0.15 11.6 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|330835169|ref|YP_004409897.1| - 0.012 14.8 0.0 0.97 8.6 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.14 gi|330835169|ref|YP_004409897.1| - 0.021 14.3 0.0 0.066 12.7 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory protein, Fis family HTH_36 PF13730.1 gi|330835169|ref|YP_004409897.1| - 0.022 14.8 0.0 0.85 9.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.2 gi|330835169|ref|YP_004409897.1| - 0.031 14.5 0.2 0.19 11.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain GntR PF00392.16 gi|330835169|ref|YP_004409897.1| - 0.053 12.9 0.1 1.5 8.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|330835169|ref|YP_004409897.1| - 0.054 13.6 0.0 15 5.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_37 PF13744.1 gi|330835169|ref|YP_004409897.1| - 0.054 13.2 0.2 0.2 11.4 0.0 2.0 3 0 0 3 3 1 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|330835169|ref|YP_004409897.1| - 0.058 13.2 0.1 6.6 6.6 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_32 PF13565.1 gi|330835169|ref|YP_004409897.1| - 0.062 14.1 0.0 0.2 12.4 0.0 1.8 2 0 0 2 2 1 0 Homeodomain-like domain HTH_3 PF01381.17 gi|330835169|ref|YP_004409897.1| - 0.072 12.9 0.0 0.8 9.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix HTH_22 PF13309.1 gi|330835169|ref|YP_004409897.1| - 0.073 12.8 0.3 22 4.9 0.0 3.2 3 1 1 4 4 3 0 HTH domain Myb_DNA-bind_6 PF13921.1 gi|330835169|ref|YP_004409897.1| - 0.11 12.6 0.0 0.67 10.0 0.0 2.1 2 0 0 2 2 2 0 Myb-like DNA-binding domain HTH_Crp_2 PF13545.1 gi|330835169|ref|YP_004409897.1| - 0.14 11.9 0.0 6.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|330835169|ref|YP_004409897.1| - 0.16 11.7 0.0 1.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Pkinase PF00069.20 gi|330835170|ref|YP_004409898.1| - 2.8e-27 95.4 0.0 4.9e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|330835170|ref|YP_004409898.1| - 1.7e-16 60.0 0.0 3.7e-16 58.9 0.0 1.5 1 1 0 1 1 1 1 Protein tyrosine kinase TPR_11 PF13414.1 gi|330835170|ref|YP_004409898.1| - 1.1e-06 28.2 3.5 0.00011 21.7 0.6 3.6 2 2 0 2 2 2 1 TPR repeat TPR_16 PF13432.1 gi|330835170|ref|YP_004409898.1| - 3.4e-06 27.5 0.1 0.0076 16.8 0.0 3.5 2 1 1 3 3 3 2 Tetratricopeptide repeat TPR_2 PF07719.12 gi|330835170|ref|YP_004409898.1| - 8.6e-06 25.2 5.4 0.0014 18.3 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_1 PF00515.23 gi|330835170|ref|YP_004409898.1| - 1.3e-05 24.6 4.7 0.00015 21.2 0.0 4.4 5 0 0 5 5 5 1 Tetratricopeptide repeat Apc3 PF12895.2 gi|330835170|ref|YP_004409898.1| - 0.00011 22.3 0.2 0.16 12.1 0.0 2.6 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 PPR PF01535.15 gi|330835170|ref|YP_004409898.1| - 0.00013 21.6 7.0 0.88 9.6 0.2 5.1 5 0 0 5 5 5 2 PPR repeat TPR_6 PF13174.1 gi|330835170|ref|YP_004409898.1| - 0.0033 17.7 0.5 43 4.8 0.0 4.8 5 0 0 5 5 4 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|330835170|ref|YP_004409898.1| - 0.0033 17.0 0.9 0.033 13.9 0.0 3.2 4 1 1 5 5 2 1 Tetratricopeptide repeat TPR_12 PF13424.1 gi|330835170|ref|YP_004409898.1| - 0.0044 16.9 1.4 0.6 10.0 0.0 3.6 2 2 2 4 4 3 1 Tetratricopeptide repeat TPR_7 PF13176.1 gi|330835170|ref|YP_004409898.1| - 0.0078 15.9 0.1 2.3 8.2 0.0 3.8 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_14 PF13428.1 gi|330835170|ref|YP_004409898.1| - 0.0086 16.6 0.1 58 4.7 0.0 4.7 3 1 2 5 5 5 0 Tetratricopeptide repeat PPR_2 PF13041.1 gi|330835170|ref|YP_004409898.1| - 0.0099 15.8 0.7 1.1 9.2 0.2 3.7 4 0 0 4 4 4 1 PPR repeat family APH PF01636.18 gi|330835170|ref|YP_004409898.1| - 0.013 15.2 0.0 2 8.0 0.0 2.5 1 1 0 2 2 2 0 Phosphotransferase enzyme family Pox_ser-thr_kin PF05445.6 gi|330835170|ref|YP_004409898.1| - 0.021 13.6 0.3 0.066 12.0 0.0 1.9 2 1 0 2 2 2 0 Poxvirus serine/threonine protein kinase BTAD PF03704.12 gi|330835170|ref|YP_004409898.1| - 0.033 14.4 0.0 44 4.3 0.0 3.9 3 1 0 3 3 3 0 Bacterial transcriptional activator domain Kdo PF06293.9 gi|330835170|ref|YP_004409898.1| - 0.039 13.0 0.0 0.089 11.8 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family TPR_19 PF14559.1 gi|330835170|ref|YP_004409898.1| - 0.049 13.9 0.2 34 4.8 0.1 3.2 2 1 2 4 4 4 0 Tetratricopeptide repeat CBS PF00571.23 gi|330835171|ref|YP_004409899.1| - 9.2e-47 156.5 9.2 1.6e-13 50.2 0.1 4.2 4 0 0 4 4 4 4 CBS domain BiPBP_C PF06832.7 gi|330835171|ref|YP_004409899.1| - 0.0031 17.4 0.0 0.25 11.2 0.0 2.3 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family T2SE_Nter PF05157.10 gi|330835171|ref|YP_004409899.1| - 0.025 14.6 0.1 0.15 12.1 0.0 2.4 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein E, N-terminal domain Topoisom_bac PF01131.15 gi|330835172|ref|YP_004409900.1| - 4.4e-108 361.6 0.0 6.1e-108 361.2 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim_Crpt PF13342.1 gi|330835172|ref|YP_004409900.1| - 4.9e-13 48.4 2.8 4.9e-13 48.4 1.9 2.4 2 0 0 2 2 2 1 C-terminal repeat of topoisomerase Toprim PF01751.17 gi|330835172|ref|YP_004409900.1| - 1.6e-10 40.8 0.0 5.8e-10 39.0 0.0 1.9 2 0 0 2 2 2 1 Toprim domain Radical_SAM PF04055.16 gi|330835175|ref|YP_004409903.1| - 2e-08 34.5 0.0 3.6e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Lactamase_B PF00753.22 gi|330835177|ref|YP_004409905.1| - 1.1e-06 28.5 3.0 3.5e-06 26.7 2.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RTTN_N PF14726.1 gi|330835177|ref|YP_004409905.1| - 0.0094 16.4 0.1 0.019 15.5 0.0 1.6 1 1 0 1 1 1 1 Rotatin, an armadillo repeat protein, centriole functioning Lactamase_B_2 PF12706.2 gi|330835177|ref|YP_004409905.1| - 0.027 14.0 0.1 0.037 13.5 0.0 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF217 PF02697.9 gi|330835178|ref|YP_004409906.1| - 0.015 15.4 1.5 0.024 14.8 0.6 1.6 2 0 0 2 2 2 0 Uncharacterized ACR, COG1753 V-SNARE PF05008.10 gi|330835178|ref|YP_004409906.1| - 0.068 13.3 1.1 0.37 10.9 0.7 2.0 1 1 1 2 2 2 0 Vesicle transport v-SNARE protein N-terminus Ribosomal_L11 PF00298.14 gi|330835178|ref|YP_004409906.1| - 0.091 12.9 0.1 0.15 12.2 0.1 1.3 1 1 0 1 1 1 0 Ribosomal protein L11, RNA binding domain DUF241 PF03087.9 gi|330835178|ref|YP_004409906.1| - 0.46 9.9 2.7 11 5.4 0.7 2.0 1 1 1 2 2 2 0 Arabidopsis protein of unknown function DDDD PF10161.4 gi|330835179|ref|YP_004409907.1| - 0.017 14.7 0.1 0.041 13.5 0.1 1.6 1 0 0 1 1 1 0 Putative mitochondrial precursor protein DUF1628 PF07790.6 gi|330835179|ref|YP_004409907.1| - 0.023 15.4 5.8 0.044 14.5 4.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF4352 PF11611.3 gi|330835179|ref|YP_004409907.1| - 0.098 12.8 0.1 0.15 12.2 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) Pro-kuma_activ PF09286.6 gi|330835181|ref|YP_004409909.1| - 6.3e-21 74.9 0.0 1.3e-20 73.8 0.0 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|330835181|ref|YP_004409909.1| - 5.1e-09 35.6 1.5 1.1e-08 34.5 1.0 1.5 1 0 0 1 1 1 1 Subtilase family MFS_1 PF07690.11 gi|330835182|ref|YP_004409910.1| - 1.2e-29 103.1 39.7 2.5e-18 65.9 12.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330835182|ref|YP_004409910.1| - 9.2e-05 21.0 1.3 9.2e-05 21.0 0.9 2.6 1 1 0 2 2 2 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|330835182|ref|YP_004409910.1| - 0.011 14.3 21.3 0.045 12.3 7.5 2.1 2 0 0 2 2 2 0 Sugar (and other) transporter Lysine_decarbox PF03641.9 gi|330835183|ref|YP_004409911.1| - 0.0019 17.9 0.2 0.0045 16.7 0.1 1.6 1 1 1 2 2 2 1 Possible lysine decarboxylase Nuc_deoxyrib_tr PF05014.10 gi|330835183|ref|YP_004409911.1| - 0.08 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase Methyltransf_11 PF08241.7 gi|330835184|ref|YP_004409912.1| - 7.1e-12 45.6 0.0 1.1e-11 45.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330835184|ref|YP_004409912.1| - 5.1e-07 29.0 0.0 1.7e-06 27.3 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|330835184|ref|YP_004409912.1| - 1.4e-06 28.1 0.0 1.8e-06 27.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330835184|ref|YP_004409912.1| - 5.8e-05 23.6 0.0 0.00027 21.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330835184|ref|YP_004409912.1| - 0.00012 22.3 0.0 0.00021 21.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330835184|ref|YP_004409912.1| - 0.00053 19.6 0.0 0.0024 17.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330835184|ref|YP_004409912.1| - 0.00058 20.2 0.0 0.0013 19.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330835184|ref|YP_004409912.1| - 0.00069 19.0 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|330835184|ref|YP_004409912.1| - 0.0014 18.3 0.0 0.0068 16.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.6 gi|330835184|ref|YP_004409912.1| - 0.0052 15.5 0.0 0.044 12.4 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1698) Methyltransf_26 PF13659.1 gi|330835184|ref|YP_004409912.1| - 0.0067 16.4 0.0 0.022 14.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|330835184|ref|YP_004409912.1| - 0.05 12.5 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Pyr_redox_2 PF07992.9 gi|330835185|ref|YP_004409913.1| - 5.8e-37 127.5 0.7 5.8e-36 124.2 0.5 3.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|330835185|ref|YP_004409913.1| - 1.9e-28 98.6 0.2 3.3e-28 97.8 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|330835185|ref|YP_004409913.1| - 1.1e-12 48.1 2.2 9.8e-12 45.1 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330835185|ref|YP_004409913.1| - 3.7e-10 40.1 0.0 1.7e-05 25.0 0.0 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330835185|ref|YP_004409913.1| - 4.5e-07 29.0 7.2 1.8e-05 23.8 0.4 3.9 2 2 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|330835185|ref|YP_004409913.1| - 5.1e-05 21.9 0.3 0.24 9.8 0.0 2.9 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|330835185|ref|YP_004409913.1| - 0.0042 16.2 0.0 0.0073 15.4 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|330835185|ref|YP_004409913.1| - 0.0051 15.7 1.7 0.72 8.6 0.0 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835185|ref|YP_004409913.1| - 0.053 12.3 3.3 1 8.0 1.1 2.6 2 1 0 2 2 2 0 FAD binding domain K_oxygenase PF13434.1 gi|330835185|ref|YP_004409913.1| - 0.057 12.3 0.0 0.39 9.5 0.0 2.2 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) YHS PF04945.8 gi|330835186|ref|YP_004409914.1| - 7.5e-06 25.6 1.1 9.7e-06 25.3 0.8 1.1 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|330835186|ref|YP_004409914.1| - 1.2e-05 24.8 3.5 1.6e-05 24.4 2.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|330835186|ref|YP_004409914.1| - 0.00033 20.7 4.8 0.00044 20.3 3.4 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.3 gi|330835186|ref|YP_004409914.1| - 0.00066 20.1 3.4 0.00082 19.8 2.4 1.2 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DNA_RNApol_7kD PF03604.8 gi|330835186|ref|YP_004409914.1| - 0.0019 17.6 3.5 0.0067 15.8 0.1 2.3 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit zf-H2C2_2 PF13465.1 gi|330835186|ref|YP_004409914.1| - 0.022 15.0 2.8 0.16 12.2 0.7 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Ta0938 PF11494.3 gi|330835186|ref|YP_004409914.1| - 0.023 14.8 0.5 0.025 14.7 0.3 1.1 1 0 0 1 1 1 0 Ta0938 DUF4193 PF13834.1 gi|330835186|ref|YP_004409914.1| - 0.055 13.6 0.1 0.069 13.3 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4193) DUF164 PF02591.10 gi|330835186|ref|YP_004409914.1| - 0.058 13.2 2.3 0.084 12.7 1.6 1.3 1 0 0 1 1 1 0 Putative zinc ribbon domain Zn_ribbon_recom PF13408.1 gi|330835186|ref|YP_004409914.1| - 0.061 13.5 2.5 0.082 13.1 1.7 1.2 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain Prok-RING_1 PF14446.1 gi|330835186|ref|YP_004409914.1| - 0.067 12.9 3.7 0.27 11.0 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 LIM PF00412.17 gi|330835186|ref|YP_004409914.1| - 0.067 13.2 6.4 1.5 8.9 4.8 2.0 1 1 0 1 1 1 0 LIM domain DZR PF12773.2 gi|330835186|ref|YP_004409914.1| - 0.08 12.7 3.2 0.15 11.9 2.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|330835186|ref|YP_004409914.1| - 0.082 12.5 5.3 4.3 7.0 3.7 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Kin17_mid PF10357.4 gi|330835186|ref|YP_004409914.1| - 0.093 12.3 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Domain of Kin17 curved DNA-binding protein DUF3268 PF11672.3 gi|330835186|ref|YP_004409914.1| - 0.12 12.4 1.8 0.15 12.1 1.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) Herpes_UL52 PF03121.10 gi|330835186|ref|YP_004409914.1| - 0.13 12.0 1.8 0.14 11.8 1.3 1.1 1 0 0 1 1 1 0 Herpesviridae UL52/UL70 DNA primase zinc_ribbon_2 PF13240.1 gi|330835186|ref|YP_004409914.1| - 0.13 11.7 5.7 0.36 10.3 4.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Zn_ribbon_2 PF12674.2 gi|330835186|ref|YP_004409914.1| - 0.13 12.5 3.0 0.16 12.3 2.1 1.1 1 0 0 1 1 1 0 Putative zinc ribbon domain DUF1677 PF07911.8 gi|330835186|ref|YP_004409914.1| - 0.14 12.3 1.2 0.15 12.3 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1677) TF_Zn_Ribbon PF08271.7 gi|330835186|ref|YP_004409914.1| - 0.16 11.3 0.3 0.16 11.3 0.2 1.9 1 1 1 2 2 2 0 TFIIB zinc-binding YokU PF14122.1 gi|330835186|ref|YP_004409914.1| - 0.17 11.6 0.1 0.17 11.6 0.1 1.7 1 1 1 2 2 2 0 YokU-like protein Zn_Tnp_IS1595 PF12760.2 gi|330835186|ref|YP_004409914.1| - 0.29 10.9 4.5 0.55 10.0 3.1 1.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain RPAP2_Rtr1 PF04181.8 gi|330835186|ref|YP_004409914.1| - 0.31 11.1 4.6 0.38 10.8 3.2 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family Metallothio_Pro PF02069.11 gi|330835186|ref|YP_004409914.1| - 0.31 10.8 5.0 0.53 10.1 3.4 1.5 1 1 0 1 1 1 0 Prokaryotic metallothionein zf-C3HC4_3 PF13920.1 gi|330835186|ref|YP_004409914.1| - 0.41 10.3 6.0 1.9 8.2 4.1 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) NinF PF05810.7 gi|330835186|ref|YP_004409914.1| - 1.1 9.1 6.3 30 4.4 4.4 2.1 1 1 0 1 1 1 0 NinF protein Evr1_Alr PF04777.8 gi|330835186|ref|YP_004409914.1| - 1.7 8.6 4.8 1.3 8.9 2.0 1.7 1 1 1 2 2 2 0 Erv1 / Alr family HMA PF00403.21 gi|330835186|ref|YP_004409914.1| - 3.4 7.9 4.8 12 6.1 0.6 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain zf-BED PF02892.10 gi|330835186|ref|YP_004409914.1| - 3.9 7.3 8.3 4.6 7.0 0.2 2.0 1 1 1 2 2 2 0 BED zinc finger HTH_10 PF04967.7 gi|330835187|ref|YP_004409915.1| - 7e-18 63.9 0.0 1.2e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|330835187|ref|YP_004409915.1| - 0.0012 18.1 0.0 0.0024 17.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF4476 PF14771.1 gi|330835187|ref|YP_004409915.1| - 0.035 14.1 0.0 0.053 13.5 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) Fe_dep_repress PF01325.14 gi|330835187|ref|YP_004409915.1| - 0.048 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|330835187|ref|YP_004409915.1| - 0.053 13.8 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|330835187|ref|YP_004409915.1| - 0.1 12.3 0.1 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 MarR family Ndc1_Nup PF09531.5 gi|330835188|ref|YP_004409916.1| - 9.4 4.5 11.9 21 3.3 7.9 1.7 1 1 1 2 2 2 0 Nucleoporin protein Ndc1-Nup WTF PF03303.8 gi|330835190|ref|YP_004409918.1| - 0.66 9.3 4.2 0.2 11.0 0.6 1.6 1 1 0 1 1 1 0 WTF protein MFS_1 PF07690.11 gi|330835191|ref|YP_004409919.1| - 7.3e-54 182.7 42.5 7.3e-54 182.7 29.5 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835191|ref|YP_004409919.1| - 3e-06 26.0 12.0 3e-06 26.0 8.3 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|330835191|ref|YP_004409919.1| - 0.00095 17.3 5.4 0.00095 17.3 3.8 2.6 2 0 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.19 gi|330835193|ref|YP_004409921.1| - 6.8e-22 77.6 38.7 5.4e-19 68.0 9.6 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|330835193|ref|YP_004409921.1| - 1.1e-18 67.0 55.4 1.1e-18 67.0 38.4 1.8 1 1 0 1 1 1 1 Major Facilitator Superfamily FeoC PF09012.5 gi|330835194|ref|YP_004409922.1| - 0.0049 16.5 0.2 0.02 14.5 0.0 2.0 2 0 0 2 2 2 1 FeoC like transcriptional regulator DAP3 PF10236.4 gi|330835194|ref|YP_004409922.1| - 0.0052 15.7 0.5 0.048 12.5 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial ribosomal death-associated protein 3 DASH_Dad3 PF08656.5 gi|330835194|ref|YP_004409922.1| - 0.044 13.4 1.3 3.7 7.3 0.1 3.1 3 0 0 3 3 3 0 DASH complex subunit Dad3 SbcD_C PF12320.3 gi|330835194|ref|YP_004409922.1| - 0.058 13.4 1.0 0.33 10.9 0.1 2.1 2 0 0 2 2 2 0 Type 5 capsule protein repressor C-terminal domain DUF3662 PF12401.3 gi|330835194|ref|YP_004409922.1| - 0.076 13.1 0.1 0.16 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2662) AKNA PF12443.3 gi|330835194|ref|YP_004409922.1| - 0.088 12.8 0.1 0.24 11.4 0.0 1.6 1 1 0 1 1 1 0 AT-hook-containing transcription factor Cep57_CLD_2 PF14197.1 gi|330835194|ref|YP_004409922.1| - 0.091 12.7 1.9 7.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 AAA_17 PF13207.1 gi|330835195|ref|YP_004409923.1| - 0.00028 21.6 0.2 0.002 18.9 0.0 2.3 2 2 0 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|330835195|ref|YP_004409923.1| - 0.0023 17.5 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|330835195|ref|YP_004409923.1| - 0.0025 17.9 0.0 0.008 16.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|330835195|ref|YP_004409923.1| - 0.0074 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|330835195|ref|YP_004409923.1| - 0.016 15.5 0.0 0.07 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA PF00004.24 gi|330835195|ref|YP_004409923.1| - 0.029 14.5 0.0 0.086 13.0 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|330835195|ref|YP_004409923.1| - 0.049 12.4 0.0 0.1 11.3 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.1 gi|330835195|ref|YP_004409923.1| - 0.058 13.2 0.4 0.42 10.5 0.1 2.6 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|330835195|ref|YP_004409923.1| - 0.06 12.9 0.1 0.21 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330835195|ref|YP_004409923.1| - 0.072 13.0 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|330835195|ref|YP_004409923.1| - 0.091 12.1 0.0 0.83 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sugar_tr PF00083.19 gi|330835196|ref|YP_004409924.1| - 2.2e-53 181.4 21.2 2.7e-53 181.1 14.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330835196|ref|YP_004409924.1| - 2.1e-22 79.3 38.6 6.1e-22 77.8 22.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1129 PF06570.6 gi|330835196|ref|YP_004409924.1| - 0.32 10.2 5.4 0.16 11.2 1.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1129) PadR PF03551.9 gi|330835197|ref|YP_004409925.1| - 1.9e-18 66.0 0.3 4e-18 64.9 0.0 1.6 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF505 PF04458.7 gi|330835197|ref|YP_004409925.1| - 1.8e-05 23.0 0.1 1.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.1 gi|330835197|ref|YP_004409925.1| - 9.4e-05 22.3 0.2 0.0003 20.7 0.0 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|330835197|ref|YP_004409925.1| - 0.00015 21.3 0.3 0.00029 20.4 0.2 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.1 gi|330835197|ref|YP_004409925.1| - 0.00022 20.9 0.5 0.00057 19.6 0.0 1.9 3 0 0 3 3 3 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|330835197|ref|YP_004409925.1| - 0.0011 19.2 0.1 0.0034 17.6 0.0 1.9 2 1 0 2 2 2 1 Winged helix DNA-binding domain Mrr_N PF14338.1 gi|330835197|ref|YP_004409925.1| - 0.013 15.5 1.0 0.43 10.6 0.0 2.8 3 0 0 3 3 3 0 Mrr N-terminal domain DUF1495 PF07381.6 gi|330835197|ref|YP_004409925.1| - 0.043 13.4 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Phage_pRha PF09669.5 gi|330835197|ref|YP_004409925.1| - 0.12 12.7 0.0 0.19 12.1 0.0 1.5 1 1 0 1 1 1 0 Phage regulatory protein Rha (Phage_pRha) HTH_12 PF08461.5 gi|330835197|ref|YP_004409925.1| - 0.35 10.6 4.9 0.23 11.2 0.4 2.7 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain ABC_tran PF00005.22 gi|330835198|ref|YP_004409926.1| - 4.9e-26 91.6 0.0 7.6e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835198|ref|YP_004409926.1| - 5.9e-14 52.7 0.0 8.6e-08 32.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|330835198|ref|YP_004409926.1| - 7.1e-08 31.9 0.0 0.00087 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|330835198|ref|YP_004409926.1| - 0.00079 19.8 0.0 0.0012 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|330835198|ref|YP_004409926.1| - 0.00088 19.3 0.0 0.0014 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|330835198|ref|YP_004409926.1| - 0.00097 18.6 0.1 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|330835198|ref|YP_004409926.1| - 0.0045 16.1 0.0 0.0077 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NTPase_1 PF03266.10 gi|330835198|ref|YP_004409926.1| - 0.0081 15.8 0.3 0.5 10.0 0.1 2.3 2 0 0 2 2 2 1 NTPase AAA_17 PF13207.1 gi|330835198|ref|YP_004409926.1| - 0.014 16.1 0.2 0.053 14.3 0.1 1.9 2 2 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|330835198|ref|YP_004409926.1| - 0.059 12.0 0.0 0.087 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|330835198|ref|YP_004409926.1| - 0.062 12.9 0.1 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|330835198|ref|YP_004409926.1| - 0.12 12.7 0.1 1 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane PF01061.19 gi|330835199|ref|YP_004409927.1| - 4.9e-12 45.4 24.8 4.9e-12 45.4 17.2 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330835199|ref|YP_004409927.1| - 6.9e-05 22.0 31.5 0.0001 21.4 21.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3309 PF11752.3 gi|330835199|ref|YP_004409927.1| - 1.8 8.3 11.3 6.7 6.5 1.9 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3309) Ammonium_transp PF00909.16 gi|330835200|ref|YP_004409928.1| - 8.8e-93 310.9 22.4 1.1e-92 310.6 15.5 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family MFS_1 PF07690.11 gi|330835201|ref|YP_004409929.1| - 1.4e-56 191.7 49.7 1e-54 185.6 33.7 2.4 2 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835201|ref|YP_004409929.1| - 1.8e-09 36.7 14.3 1.8e-09 36.7 9.9 2.6 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|330835201|ref|YP_004409929.1| - 9.9e-08 30.5 10.4 9.9e-08 30.5 7.2 2.2 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_2 PF13347.1 gi|330835201|ref|YP_004409929.1| - 5.2 5.3 39.6 0.051 11.9 11.0 3.5 2 2 1 3 3 3 0 MFS/sugar transport protein Aminotran_1_2 PF00155.16 gi|330835202|ref|YP_004409930.1| - 2.5e-22 79.3 0.0 2.9e-22 79.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|330835202|ref|YP_004409930.1| - 0.0075 14.8 0.0 0.0099 14.4 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase NTPase_I-T PF01931.13 gi|330835203|ref|YP_004409931.1| - 2.2e-37 128.3 0.0 2.5e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 VitK2_biosynth PF02621.9 gi|330835204|ref|YP_004409932.1| - 1.2e-47 162.1 0.0 1.4e-47 162.0 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Cation_efflux PF01545.16 gi|330835207|ref|YP_004409935.1| - 1.1e-22 80.5 12.2 1.2e-22 80.2 8.5 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2976 PF11190.3 gi|330835208|ref|YP_004409936.1| - 0.014 14.9 0.1 0.014 14.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) CLPTM1 PF05602.7 gi|330835208|ref|YP_004409936.1| - 0.059 12.0 0.1 0.062 12.0 0.1 1.0 1 0 0 1 1 1 0 Cleft lip and palate transmembrane protein 1 (CLPTM1) YfzA PF14118.1 gi|330835208|ref|YP_004409936.1| - 0.11 12.5 0.7 0.16 12.0 0.5 1.3 1 1 0 1 1 1 0 YfzA-like protein EMG1 PF03587.9 gi|330835210|ref|YP_004409938.1| - 6.7e-40 136.5 0.0 7.6e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.11 gi|330835211|ref|YP_004409939.1| - 1.2e-17 63.5 0.1 1.5e-17 63.2 0.1 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain CRS1_YhbY PF01985.16 gi|330835212|ref|YP_004409940.1| - 5.9e-11 42.2 2.9 6.3e-11 42.1 2.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Met_10 PF02475.11 gi|330835213|ref|YP_004409941.1| - 8.6e-27 94.0 0.0 1.1e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Ubie_methyltran PF01209.13 gi|330835213|ref|YP_004409941.1| - 0.00075 18.6 0.0 0.001 18.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|330835213|ref|YP_004409941.1| - 0.0017 18.4 0.0 0.0026 17.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330835213|ref|YP_004409941.1| - 0.0026 17.1 0.0 0.004 16.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|330835213|ref|YP_004409941.1| - 0.01 16.3 0.0 0.021 15.2 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Pyr_redox_2 PF07992.9 gi|330835214|ref|YP_004409942.1| - 8e-21 74.8 0.0 1.9e-20 73.6 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330835214|ref|YP_004409942.1| - 2.9e-17 63.3 0.3 6.2e-12 46.0 0.0 2.5 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835214|ref|YP_004409942.1| - 7.2e-15 55.1 0.4 3.2e-11 43.4 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|330835214|ref|YP_004409942.1| - 6.9e-10 38.3 0.8 2e-08 33.5 0.0 3.1 3 1 1 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|330835214|ref|YP_004409942.1| - 1.2e-08 33.8 0.6 7.9e-05 21.2 0.0 3.8 5 0 0 5 5 5 2 HI0933-like protein DAO PF01266.19 gi|330835214|ref|YP_004409942.1| - 5.9e-07 28.7 2.0 0.0063 15.4 0.1 3.1 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|330835214|ref|YP_004409942.1| - 5.3e-06 26.6 0.3 0.0012 19.1 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|330835214|ref|YP_004409942.1| - 4.5e-05 23.3 0.1 0.0016 18.3 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|330835214|ref|YP_004409942.1| - 0.00012 21.2 1.0 0.0055 15.8 0.1 3.2 4 0 0 4 4 4 1 Thi4 family FAD_oxidored PF12831.2 gi|330835214|ref|YP_004409942.1| - 0.0002 20.5 1.4 0.00098 18.3 0.0 2.2 2 1 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835214|ref|YP_004409942.1| - 0.00068 18.5 2.7 0.15 10.8 0.0 3.5 3 1 0 3 3 3 1 FAD binding domain FMO-like PF00743.14 gi|330835214|ref|YP_004409942.1| - 0.00095 17.4 0.1 0.0025 16.1 0.0 1.7 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.14 gi|330835214|ref|YP_004409942.1| - 0.0079 15.2 0.3 2.5 7.0 0.0 3.1 2 1 1 3 3 3 1 FAD binding domain Spermine_synth PF01564.12 gi|330835214|ref|YP_004409942.1| - 0.028 13.3 1.5 0.76 8.6 0.0 2.2 2 0 0 2 2 2 0 Spermine/spermidine synthase Lycopene_cycl PF05834.7 gi|330835214|ref|YP_004409942.1| - 0.13 11.1 0.0 1.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein BTP PF05232.7 gi|330835215|ref|YP_004409943.1| - 0.13 12.0 0.2 0.24 11.1 0.1 1.6 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family NAD_kinase PF01513.16 gi|330835216|ref|YP_004409944.1| - 4.3e-23 81.4 0.3 5.3e-23 81.1 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DUF2117 PF09890.4 gi|330835216|ref|YP_004409944.1| - 0.034 13.3 0.2 0.14 11.3 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2117) DAGK_cat PF00781.19 gi|330835216|ref|YP_004409944.1| - 0.069 12.5 0.1 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain zf-C3HC4_3 PF13920.1 gi|330835217|ref|YP_004409945.1| - 0.0006 19.4 1.0 0.00086 18.9 0.7 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) NOB1_Zn_bind PF08772.6 gi|330835217|ref|YP_004409945.1| - 0.004 16.9 1.0 0.0069 16.1 0.7 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|330835217|ref|YP_004409945.1| - 0.013 15.4 5.8 0.083 12.8 4.0 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_5 PF14634.1 gi|330835217|ref|YP_004409945.1| - 0.021 14.5 1.6 0.032 13.9 1.1 1.2 1 0 0 1 1 1 0 zinc-RING finger domain DZR PF12773.2 gi|330835217|ref|YP_004409945.1| - 0.028 14.2 0.5 0.043 13.6 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330835217|ref|YP_004409945.1| - 0.04 13.2 3.0 0.75 9.1 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2HC5 PF06221.8 gi|330835217|ref|YP_004409945.1| - 0.043 13.5 1.2 0.064 13.0 0.8 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.6 gi|330835217|ref|YP_004409945.1| - 0.075 12.8 0.3 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C2H2 PF00096.21 gi|330835217|ref|YP_004409945.1| - 0.097 13.0 2.4 0.92 9.9 0.2 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type TFIIS_C PF01096.13 gi|330835217|ref|YP_004409945.1| - 0.17 11.5 2.6 0.31 10.7 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4428 PF14471.1 gi|330835217|ref|YP_004409945.1| - 0.26 11.0 2.2 2.5 7.9 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-FPG_IleRS PF06827.9 gi|330835217|ref|YP_004409945.1| - 0.38 10.4 3.5 5.4 6.7 0.2 2.4 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-C3HC4_2 PF13923.1 gi|330835217|ref|YP_004409945.1| - 0.42 10.6 3.0 0.73 9.9 2.1 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF2072 PF09845.4 gi|330835217|ref|YP_004409945.1| - 0.91 9.4 4.2 7.1 6.5 1.1 2.1 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) Prim_Zn_Ribbon PF08273.7 gi|330835217|ref|YP_004409945.1| - 1.6 8.8 6.4 1.3 9.2 0.6 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase ADK_lid PF05191.9 gi|330835217|ref|YP_004409945.1| - 2.1 8.1 5.2 8.3 6.1 3.6 1.9 1 1 0 1 1 1 0 Adenylate kinase, active site lid Rubredoxin PF00301.15 gi|330835217|ref|YP_004409945.1| - 2.3 8.1 5.7 2.8 7.9 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin Het-C PF07217.6 gi|330835218|ref|YP_004409946.1| - 0.16 10.1 0.1 0.31 9.1 0.0 1.5 2 0 0 2 2 2 0 Heterokaryon incompatibility protein Het-C Aminotran_5 PF00266.14 gi|330835219|ref|YP_004409947.1| - 1e-47 162.7 0.0 1.4e-47 162.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.16 gi|330835219|ref|YP_004409947.1| - 0.0003 19.8 0.0 0.014 14.3 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|330835219|ref|YP_004409947.1| - 0.0063 15.5 0.0 0.013 14.5 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family DBI_PRT PF02277.12 gi|330835222|ref|YP_004409950.1| - 7.7e-26 90.9 0.6 1.1e-25 90.4 0.4 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase RmlD_sub_bind PF04321.12 gi|330835223|ref|YP_004409951.1| - 1.8e-23 82.8 0.0 2.3e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|330835223|ref|YP_004409951.1| - 5.4e-11 42.3 0.0 1e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family HAD_2 PF13419.1 gi|330835224|ref|YP_004409952.1| - 1.2e-21 77.7 0.0 1.5e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330835224|ref|YP_004409952.1| - 2.1e-08 34.8 0.0 3.1e-07 31.0 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330835224|ref|YP_004409952.1| - 0.00012 21.7 0.0 0.00026 20.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|330835224|ref|YP_004409952.1| - 0.00025 20.8 0.0 0.0027 17.5 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330835224|ref|YP_004409952.1| - 0.07 13.2 0.0 0.72 9.9 0.0 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase MTS PF05175.9 gi|330835225|ref|YP_004409953.1| - 2.3e-12 46.6 0.0 3.1e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|330835225|ref|YP_004409953.1| - 2.8e-12 46.4 0.0 3.2e-12 46.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330835225|ref|YP_004409953.1| - 1.1e-10 41.5 0.0 1.4e-10 41.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330835225|ref|YP_004409953.1| - 2.7e-10 40.8 0.0 3.5e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330835225|ref|YP_004409953.1| - 1.5e-07 31.7 0.3 2.3e-07 31.1 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330835225|ref|YP_004409953.1| - 8.9e-06 26.1 0.1 1.5e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|330835225|ref|YP_004409953.1| - 5.7e-05 22.7 0.0 6.8e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|330835225|ref|YP_004409953.1| - 7.7e-05 23.0 0.0 0.00011 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330835225|ref|YP_004409953.1| - 8.9e-05 22.2 0.0 0.00016 21.4 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|330835225|ref|YP_004409953.1| - 0.0004 19.5 0.0 0.0006 19.0 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.8 gi|330835225|ref|YP_004409953.1| - 0.0018 17.4 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FmrO PF07091.6 gi|330835225|ref|YP_004409953.1| - 0.0052 15.7 0.0 0.0073 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|330835225|ref|YP_004409953.1| - 0.021 13.8 0.1 0.04 12.9 0.0 1.5 2 0 0 2 2 2 0 Putative methyltransferase RrnaAD PF00398.15 gi|330835225|ref|YP_004409953.1| - 0.08 11.9 0.0 0.096 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|330835225|ref|YP_004409953.1| - 0.097 12.3 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Hydrolase_3 PF08282.7 gi|330835226|ref|YP_004409954.1| - 1.6e-20 73.7 0.1 8.2e-15 55.0 0.1 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|330835226|ref|YP_004409954.1| - 5e-06 25.9 0.0 0.0051 16.1 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase AP_endonuc_2 PF01261.19 gi|330835227|ref|YP_004409955.1| - 3.3e-25 88.6 0.1 4.1e-25 88.3 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|330835227|ref|YP_004409955.1| - 0.0019 18.3 0.9 0.3 11.2 0.0 3.0 1 1 1 2 2 2 1 Radical SAM superfamily UvdE PF03851.9 gi|330835227|ref|YP_004409955.1| - 0.0052 15.8 0.0 0.0064 15.5 0.0 1.3 1 1 0 1 1 1 1 UV-endonuclease UvdE DeoC PF01791.4 gi|330835227|ref|YP_004409955.1| - 0.0088 15.3 0.0 0.013 14.7 0.0 1.4 1 0 0 1 1 1 1 DeoC/LacD family aldolase Decorin_bind PF02352.10 gi|330835227|ref|YP_004409955.1| - 0.0095 15.9 0.7 0.023 14.7 0.0 1.9 2 0 0 2 2 2 1 Decorin binding protein PdxJ PF03740.8 gi|330835227|ref|YP_004409955.1| - 0.026 13.6 0.1 0.078 12.1 0.1 1.7 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthesis protein PdxJ DUF1884 PF08967.5 gi|330835227|ref|YP_004409955.1| - 0.093 12.8 1.3 29 4.8 0.0 3.3 2 1 1 3 3 3 0 Domain of unknown function (DUF1884) GHL6 PF14871.1 gi|330835227|ref|YP_004409955.1| - 0.12 12.4 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Peptidase_M61 PF05299.7 gi|330835228|ref|YP_004409956.1| - 1.9e-31 108.5 0.3 3.2e-31 107.8 0.2 1.4 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_MA_2 PF13485.1 gi|330835228|ref|YP_004409956.1| - 1.8e-13 50.6 0.1 3.7e-13 49.6 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily PDZ_2 PF13180.1 gi|330835228|ref|YP_004409956.1| - 0.00032 20.5 0.7 0.0011 18.7 0.1 2.3 2 1 0 2 2 2 1 PDZ domain GRASP55_65 PF04495.9 gi|330835228|ref|YP_004409956.1| - 0.003 17.5 0.0 0.0055 16.6 0.0 1.3 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain PDZ PF00595.19 gi|330835228|ref|YP_004409956.1| - 0.043 13.9 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 PDZ domain (Also known as DHR or GLGF) FAD_binding_4 PF01565.18 gi|330835229|ref|YP_004409957.1| - 3.2e-35 120.6 0.0 6.3e-35 119.6 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|330835229|ref|YP_004409957.1| - 1.1e-08 35.2 1.9 2.4e-08 34.2 1.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330835229|ref|YP_004409957.1| - 1.3e-07 31.5 3.5 3.3e-07 30.2 2.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835229|ref|YP_004409957.1| - 2e-07 31.3 4.4 0.00081 19.7 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835229|ref|YP_004409957.1| - 2.6e-07 30.3 3.7 1.4e-06 27.9 3.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835229|ref|YP_004409957.1| - 1.6e-06 28.3 4.6 3.6e-06 27.2 3.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain FAD-oxidase_C PF02913.14 gi|330835229|ref|YP_004409957.1| - 0.00027 20.3 0.1 0.0011 18.3 0.0 2.0 2 1 0 2 2 2 1 FAD linked oxidases, C-terminal domain Fer4_9 PF13187.1 gi|330835229|ref|YP_004409957.1| - 0.00057 20.1 10.1 0.012 15.9 1.3 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835229|ref|YP_004409957.1| - 0.00072 19.3 5.5 0.071 12.9 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835229|ref|YP_004409957.1| - 0.0012 19.5 5.3 0.0041 17.8 3.7 2.0 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|330835229|ref|YP_004409957.1| - 0.012 15.2 2.6 2 8.0 0.3 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|330835229|ref|YP_004409957.1| - 0.013 15.3 3.8 0.013 15.3 2.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330835229|ref|YP_004409957.1| - 0.013 15.3 12.6 0.019 14.8 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|330835229|ref|YP_004409957.1| - 0.022 14.3 17.2 0.081 12.5 3.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Enoyl_reductase PF12241.3 gi|330835229|ref|YP_004409957.1| - 0.033 13.1 0.4 0.074 12.0 0.3 1.5 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region Fer4_3 PF12798.2 gi|330835229|ref|YP_004409957.1| - 3.1 8.5 18.0 0.95 10.1 3.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain HIT PF01230.18 gi|330835230|ref|YP_004409958.1| - 1.3e-23 83.3 0.1 3.4e-23 82.0 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.3 gi|330835230|ref|YP_004409958.1| - 1.5e-13 50.9 0.0 2.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding SNARE_assoc PF09335.6 gi|330835232|ref|YP_004409960.1| - 9.2e-05 22.6 9.2 0.00016 21.8 5.0 2.4 2 1 0 2 2 2 1 SNARE associated Golgi protein NUDIX PF00293.23 gi|330835233|ref|YP_004409961.1| - 1.5e-18 66.7 0.0 1.8e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Chlor_dismutase PF06778.7 gi|330835234|ref|YP_004409962.1| - 3.1e-51 173.8 1.4 2.6e-50 170.8 0.2 1.9 1 1 1 2 2 2 2 Chlorite dismutase 2_5_RNA_ligase2 PF13563.1 gi|330835234|ref|YP_004409962.1| - 0.13 12.0 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 2'-5' RNA ligase superfamily UDG PF03167.14 gi|330835236|ref|YP_004409964.1| - 8.1e-27 93.5 0.0 9.9e-27 93.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Methyltransf_25 PF13649.1 gi|330835237|ref|YP_004409965.1| - 1.1e-12 48.2 0.0 2.1e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330835237|ref|YP_004409965.1| - 2.1e-12 46.9 0.0 2.8e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330835237|ref|YP_004409965.1| - 3.9e-12 46.1 0.0 1.9e-11 43.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330835237|ref|YP_004409965.1| - 3.7e-11 43.6 0.0 6.8e-11 42.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|330835237|ref|YP_004409965.1| - 9.6e-11 42.0 0.0 2e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330835237|ref|YP_004409965.1| - 5e-09 36.5 0.0 8.7e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330835237|ref|YP_004409965.1| - 1.9e-08 34.3 0.0 3.2e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330835237|ref|YP_004409965.1| - 1.5e-06 27.6 0.0 2.7e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|330835237|ref|YP_004409965.1| - 4.1e-06 26.0 0.1 6.9e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family TehB PF03848.9 gi|330835237|ref|YP_004409965.1| - 8.3e-06 25.1 0.1 1.3e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.15 gi|330835237|ref|YP_004409965.1| - 0.00015 20.9 0.0 0.00028 20.0 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.8 gi|330835237|ref|YP_004409965.1| - 0.0013 18.8 0.1 0.0034 17.5 0.1 1.8 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase MetW PF07021.7 gi|330835237|ref|YP_004409965.1| - 0.0029 17.0 0.1 0.0066 15.8 0.1 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_15 PF09445.5 gi|330835237|ref|YP_004409965.1| - 0.0068 15.9 0.1 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase PrmA PF06325.8 gi|330835237|ref|YP_004409965.1| - 0.0082 15.2 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) N2227 PF07942.7 gi|330835237|ref|YP_004409965.1| - 0.016 14.1 0.1 0.057 12.3 0.0 2.0 2 1 0 2 2 2 0 N2227-like protein FmrO PF07091.6 gi|330835237|ref|YP_004409965.1| - 0.016 14.2 0.0 0.03 13.3 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_9 PF08003.6 gi|330835237|ref|YP_004409965.1| - 0.041 12.5 0.1 0.058 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) DUF340 PF03956.8 gi|330835238|ref|YP_004409966.1| - 7.1e-49 165.6 16.3 7.1e-49 165.6 11.3 2.0 2 0 0 2 2 2 2 Membrane protein of unknown function (DUF340) HTH_5 PF01022.15 gi|330835239|ref|YP_004409967.1| - 3.2e-11 42.7 0.0 4.8e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|330835239|ref|YP_004409967.1| - 1.6e-07 30.9 0.0 2.2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|330835239|ref|YP_004409967.1| - 5.1e-07 28.9 0.2 1e-06 27.9 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330835239|ref|YP_004409967.1| - 3.6e-06 26.5 0.0 5.4e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|330835239|ref|YP_004409967.1| - 7.1e-06 25.6 0.1 9e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330835239|ref|YP_004409967.1| - 5e-05 22.8 0.0 6.7e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|330835239|ref|YP_004409967.1| - 9.7e-05 22.0 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|330835239|ref|YP_004409967.1| - 0.00057 19.5 0.0 0.00094 18.8 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|330835239|ref|YP_004409967.1| - 0.00082 19.6 0.1 0.001 19.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|330835239|ref|YP_004409967.1| - 0.0014 18.4 0.4 0.0017 18.1 0.3 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Penicillinase_R PF03965.11 gi|330835239|ref|YP_004409967.1| - 0.0023 18.0 0.2 0.0034 17.4 0.1 1.3 1 1 0 1 1 1 1 Penicillinase repressor Fe_dep_repress PF01325.14 gi|330835239|ref|YP_004409967.1| - 0.0043 16.9 0.0 0.012 15.5 0.0 1.7 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|330835239|ref|YP_004409967.1| - 0.0063 16.0 0.0 0.0095 15.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|330835239|ref|YP_004409967.1| - 0.011 15.7 0.0 0.016 15.1 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|330835239|ref|YP_004409967.1| - 0.018 15.2 0.1 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein TBPIP PF07106.8 gi|330835239|ref|YP_004409967.1| - 0.019 14.5 0.2 0.03 13.8 0.1 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TFIIE_alpha PF02002.12 gi|330835239|ref|YP_004409967.1| - 0.025 14.0 0.0 0.03 13.8 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_10 PF04967.7 gi|330835239|ref|YP_004409967.1| - 0.026 14.1 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.15 gi|330835239|ref|YP_004409967.1| - 0.031 14.3 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Clr5 PF14420.1 gi|330835239|ref|YP_004409967.1| - 0.042 13.7 0.1 0.083 12.7 0.0 1.7 2 0 0 2 2 1 0 Clr5 domain HTH_29 PF13551.1 gi|330835239|ref|YP_004409967.1| - 0.042 14.0 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Winged helix-turn helix HTH_30 PF13556.1 gi|330835239|ref|YP_004409967.1| - 0.047 13.2 0.4 0.094 12.3 0.3 1.7 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|330835239|ref|YP_004409967.1| - 0.063 12.8 0.0 0.089 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain NUMOD1 PF07453.8 gi|330835239|ref|YP_004409967.1| - 0.083 12.7 0.1 0.18 11.6 0.1 1.6 1 0 0 1 1 1 0 NUMOD1 domain FeoC PF09012.5 gi|330835239|ref|YP_004409967.1| - 0.091 12.4 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_23 PF13384.1 gi|330835239|ref|YP_004409967.1| - 0.13 11.9 0.0 1.5 8.6 0.0 2.0 1 1 1 2 2 2 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|330835239|ref|YP_004409967.1| - 0.13 11.8 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain z-alpha PF02295.12 gi|330835239|ref|YP_004409967.1| - 0.15 11.8 0.3 0.25 11.1 0.2 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain NAD_synthase PF02540.12 gi|330835240|ref|YP_004409968.1| - 2.6e-73 245.9 0.0 2.9e-73 245.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|330835240|ref|YP_004409968.1| - 3.2e-05 22.6 0.0 0.0026 16.3 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase HTH_23 PF13384.1 gi|330835240|ref|YP_004409968.1| - 0.023 14.3 0.0 0.17 11.6 0.0 2.4 3 0 0 3 3 3 0 Homeodomain-like domain QueC PF06508.8 gi|330835240|ref|YP_004409968.1| - 0.076 12.2 0.0 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|330835240|ref|YP_004409968.1| - 0.079 12.4 0.0 0.094 12.1 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.14 gi|330835240|ref|YP_004409968.1| - 0.11 12.3 0.0 0.25 11.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|330835240|ref|YP_004409968.1| - 0.15 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PadR PF03551.9 gi|330835241|ref|YP_004409969.1| - 1e-06 28.4 0.1 1.5e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|330835241|ref|YP_004409969.1| - 0.01 15.6 0.6 0.073 12.8 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix S10_plectin PF03501.10 gi|330835241|ref|YP_004409969.1| - 0.014 15.2 0.1 0.019 14.8 0.0 1.3 1 1 0 1 1 1 0 Plectin/S10 domain Exc PF07825.6 gi|330835241|ref|YP_004409969.1| - 0.021 14.5 0.0 0.022 14.5 0.0 1.2 1 0 0 1 1 1 0 Excisionase-like protein DUF2250 PF10007.4 gi|330835241|ref|YP_004409969.1| - 0.027 14.3 0.2 0.045 13.6 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.7 gi|330835241|ref|YP_004409969.1| - 0.05 13.6 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein Toprim_C_rpt PF13368.1 gi|330835241|ref|YP_004409969.1| - 0.055 13.9 0.0 0.082 13.4 0.0 1.2 1 0 0 1 1 1 0 Topoisomerase C-terminal repeat DUF4364 PF14277.1 gi|330835241|ref|YP_004409969.1| - 0.073 12.6 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Borrelia_lipo_1 PF05714.6 gi|330835242|ref|YP_004409970.1| - 0.1 11.6 0.0 0.15 11.1 0.0 1.2 1 0 0 1 1 1 0 Borrelia burgdorferi virulent strain associated lipoprotein VWA_2 PF13519.1 gi|330835244|ref|YP_004409972.1| - 2.9e-08 33.9 0.5 6.6e-08 32.8 0.0 1.8 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|330835244|ref|YP_004409972.1| - 1.5e-06 27.9 0.0 3.4e-06 26.8 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|330835244|ref|YP_004409972.1| - 9.5e-06 24.9 0.0 1.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA PF00092.23 gi|330835244|ref|YP_004409972.1| - 2e-05 24.3 1.4 2.7e-05 23.9 0.1 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain Activator-TraM PF11657.3 gi|330835244|ref|YP_004409972.1| - 0.0027 17.1 2.5 0.0053 16.2 1.8 1.5 1 0 0 1 1 1 1 Transcriptional activator TraM LEDGF PF11467.3 gi|330835244|ref|YP_004409972.1| - 0.017 14.7 1.2 0.12 12.0 1.1 2.2 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) SpoVAE PF14097.1 gi|330835244|ref|YP_004409972.1| - 0.031 13.6 2.1 4.8 6.5 0.0 2.8 3 0 0 3 3 3 0 Stage V sporulation protein AE1 PP2C_2 PF13672.1 gi|330835244|ref|YP_004409972.1| - 0.058 12.7 2.1 3.5 6.9 0.0 2.3 2 0 0 2 2 2 0 Protein phosphatase 2C DUF2217 PF10265.4 gi|330835244|ref|YP_004409972.1| - 0.071 11.8 3.4 0.1 11.3 2.3 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) TCP PF03634.8 gi|330835244|ref|YP_004409972.1| - 0.11 12.8 3.2 0.17 12.2 2.2 1.3 1 0 0 1 1 1 0 TCP family transcription factor HemY_N PF07219.8 gi|330835244|ref|YP_004409972.1| - 0.22 11.0 1.7 0.44 10.1 0.1 2.3 3 0 0 3 3 3 0 HemY protein N-terminus DUF3807 PF12720.2 gi|330835244|ref|YP_004409972.1| - 0.44 10.6 6.4 0.76 9.9 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) MutS_II PF05188.12 gi|330835244|ref|YP_004409972.1| - 1.7 8.6 5.1 0.39 10.7 1.1 1.7 2 0 0 2 2 2 0 MutS domain II AAA_5 PF07728.9 gi|330835245|ref|YP_004409973.1| - 2.3e-26 92.1 0.1 6.6e-26 90.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|330835245|ref|YP_004409973.1| - 9.7e-07 28.9 0.2 3.1e-06 27.3 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|330835245|ref|YP_004409973.1| - 4.2e-05 23.7 0.4 0.00033 20.7 0.0 2.5 2 2 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330835245|ref|YP_004409973.1| - 0.00039 20.6 0.1 0.0024 18.0 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|330835245|ref|YP_004409973.1| - 0.00043 19.8 0.0 0.00071 19.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|330835245|ref|YP_004409973.1| - 0.00045 19.4 0.1 0.0029 16.8 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.18 gi|330835245|ref|YP_004409973.1| - 0.00047 19.0 0.1 0.037 12.8 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family AAA_17 PF13207.1 gi|330835245|ref|YP_004409973.1| - 0.0039 18.0 0.1 0.051 14.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|330835245|ref|YP_004409973.1| - 0.016 14.7 0.0 0.061 12.8 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain Cas_Csa5 PF09702.5 gi|330835245|ref|YP_004409973.1| - 0.13 12.3 0.7 0.29 11.2 0.1 1.8 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Csa5) tRNA_anti-codon PF01336.20 gi|330835246|ref|YP_004409974.1| - 3.7e-06 26.6 0.7 5.5e-06 26.1 0.5 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain GRP PF07172.6 gi|330835246|ref|YP_004409974.1| - 0.028 14.9 3.7 0.045 14.2 2.5 1.4 1 0 0 1 1 1 0 Glycine rich protein family PqqD PF05402.7 gi|330835247|ref|YP_004409975.1| - 2e-10 40.4 0.2 2.8e-10 40.0 0.2 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) MoeA_N PF03453.12 gi|330835248|ref|YP_004409976.1| - 1.7e-39 134.7 0.0 3e-39 133.9 0.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|330835248|ref|YP_004409976.1| - 1.6e-31 108.6 0.1 2.7e-31 107.9 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|330835248|ref|YP_004409976.1| - 7.1e-09 35.4 0.0 2.5e-08 33.7 0.0 1.9 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) GHMP_kinases_N PF00288.21 gi|330835249|ref|YP_004409977.1| - 4.5e-19 68.2 1.9 1.1e-18 67.0 1.3 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|330835249|ref|YP_004409977.1| - 3.7e-07 30.2 0.0 1.7e-06 28.1 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.15 gi|330835250|ref|YP_004409978.1| - 7.9e-126 419.4 0.0 9e-126 419.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|330835250|ref|YP_004409978.1| - 7.5e-05 21.8 0.0 0.0002 20.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|330835250|ref|YP_004409978.1| - 0.00027 19.8 0.0 0.00081 18.2 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|330835250|ref|YP_004409978.1| - 0.0018 16.6 0.0 0.75 8.0 0.0 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase Beta_elim_lyase PF01212.16 gi|330835250|ref|YP_004409978.1| - 0.0055 15.8 0.0 0.028 13.5 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase CCG PF02754.11 gi|330835252|ref|YP_004409980.1| - 6.3e-35 119.0 0.7 3.2e-18 65.5 0.1 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Cellulase PF00150.13 gi|330835252|ref|YP_004409980.1| - 0.052 12.7 0.0 0.087 12.0 0.0 1.3 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Fer2_3 PF13085.1 gi|330835253|ref|YP_004409981.1| - 2.7e-31 107.6 0.3 5.9e-31 106.5 0.2 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|330835253|ref|YP_004409981.1| - 1.5e-11 44.1 3.1 1.5e-11 44.1 2.2 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835253|ref|YP_004409981.1| - 3.9e-10 39.8 10.4 3.8e-09 36.6 2.3 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835253|ref|YP_004409981.1| - 6.2e-08 32.8 6.6 6.3e-08 32.8 2.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835253|ref|YP_004409981.1| - 3.3e-07 29.9 14.1 6.8e-07 28.9 3.5 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835253|ref|YP_004409981.1| - 1.2e-05 25.6 0.6 1.2e-05 25.6 0.4 3.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835253|ref|YP_004409981.1| - 3.9e-05 23.3 15.8 0.0013 18.4 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330835253|ref|YP_004409981.1| - 9.7e-05 22.6 15.9 0.0016 18.7 5.9 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835253|ref|YP_004409981.1| - 0.0016 17.9 19.3 0.0063 16.0 1.7 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330835253|ref|YP_004409981.1| - 0.0039 17.0 18.6 0.019 14.8 0.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835253|ref|YP_004409981.1| - 0.0046 16.7 10.2 0.077 12.8 0.2 2.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835253|ref|YP_004409981.1| - 0.0057 17.1 7.4 0.47 11.0 0.5 3.0 3 0 0 3 3 3 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|330835253|ref|YP_004409981.1| - 0.0091 16.7 9.0 0.0091 16.7 6.2 3.2 1 1 3 4 4 4 2 4Fe-4S double cluster binding domain Fer2 PF00111.22 gi|330835253|ref|YP_004409981.1| - 0.016 14.9 0.4 0.016 14.9 0.3 2.3 2 1 1 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Fer4_4 PF12800.2 gi|330835253|ref|YP_004409981.1| - 0.041 14.2 18.0 0.15 12.4 0.8 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330835253|ref|YP_004409981.1| - 0.28 11.5 8.1 1.7 9.0 2.0 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain FAD_binding_2 PF00890.19 gi|330835254|ref|YP_004409982.1| - 4.5e-111 371.6 0.7 5.5e-111 371.3 0.5 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|330835254|ref|YP_004409982.1| - 1.7e-46 157.2 0.2 2.8e-46 156.5 0.1 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|330835254|ref|YP_004409982.1| - 1e-09 37.7 0.5 2.5e-07 29.9 0.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330835254|ref|YP_004409982.1| - 1.5e-05 25.0 2.9 0.00027 20.8 2.0 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330835254|ref|YP_004409982.1| - 1.7e-05 23.5 0.2 0.00041 18.9 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|330835254|ref|YP_004409982.1| - 9.5e-05 21.5 0.2 0.095 11.7 0.1 3.0 3 0 0 3 3 3 2 Thi4 family GIDA PF01134.17 gi|330835254|ref|YP_004409982.1| - 0.00042 19.2 1.7 0.006 15.4 0.8 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|330835254|ref|YP_004409982.1| - 0.00074 18.6 0.3 0.0012 18.0 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|330835254|ref|YP_004409982.1| - 0.0052 16.7 0.6 0.026 14.5 0.4 2.3 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|330835254|ref|YP_004409982.1| - 0.028 13.5 1.7 0.061 12.3 1.2 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|330835254|ref|YP_004409982.1| - 0.034 13.0 0.1 0.06 12.2 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|330835254|ref|YP_004409982.1| - 0.36 11.2 1.9 1.6 9.1 1.3 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_6 PF13344.1 gi|330835255|ref|YP_004409983.1| - 7.6e-22 77.1 0.0 2.4e-21 75.5 0.0 1.8 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330835255|ref|YP_004409983.1| - 3.4e-16 58.7 0.0 1e-15 57.1 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD_2 PF13419.1 gi|330835255|ref|YP_004409983.1| - 1.5e-06 28.5 0.0 0.00099 19.3 0.0 2.3 2 0 0 2 2 2 2 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330835255|ref|YP_004409983.1| - 2.4e-05 24.8 0.3 0.00024 21.5 0.2 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|330835255|ref|YP_004409983.1| - 0.0017 17.7 0.3 0.005 16.2 0.1 1.8 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase DUF2070 PF09843.4 gi|330835257|ref|YP_004409985.1| - 1.1e-29 103.1 0.0 1.7e-29 102.6 0.0 1.2 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) SLIDE PF09111.5 gi|330835257|ref|YP_004409985.1| - 0.12 12.0 0.3 0.26 11.0 0.1 1.6 2 0 0 2 2 2 0 SLIDE DAO PF01266.19 gi|330835258|ref|YP_004409986.1| - 2.8e-12 46.2 0.0 6.5e-08 31.8 0.0 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835258|ref|YP_004409986.1| - 1.5e-09 37.1 0.2 2.1e-05 23.5 0.0 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.14 gi|330835258|ref|YP_004409986.1| - 1.7e-08 33.9 0.0 4.3e-08 32.5 0.0 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|330835258|ref|YP_004409986.1| - 3.1e-08 33.7 0.0 6.3e-08 32.7 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330835258|ref|YP_004409986.1| - 5e-08 32.2 0.0 5.3e-07 28.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|330835258|ref|YP_004409986.1| - 1.3e-07 31.1 0.1 1.2e-06 27.9 0.1 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330835258|ref|YP_004409986.1| - 1.4e-06 28.2 0.0 3.9e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|330835258|ref|YP_004409986.1| - 8.6e-06 24.6 0.0 0.0037 15.9 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|330835258|ref|YP_004409986.1| - 8.7e-05 22.8 0.0 0.0013 19.1 0.0 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330835258|ref|YP_004409986.1| - 9.3e-05 21.6 0.1 0.0004 19.5 0.1 2.1 1 1 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|330835258|ref|YP_004409986.1| - 9.8e-05 21.4 0.0 0.00017 20.6 0.0 1.4 1 1 0 1 1 1 1 Lycopene cyclase protein HI0933_like PF03486.9 gi|330835258|ref|YP_004409986.1| - 0.00076 18.0 0.0 0.0019 16.7 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|330835258|ref|YP_004409986.1| - 0.008 16.2 0.1 0.021 14.8 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|330835258|ref|YP_004409986.1| - 0.051 13.6 0.1 0.18 11.8 0.0 1.9 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GDI PF00996.13 gi|330835258|ref|YP_004409986.1| - 0.053 11.8 0.0 0.23 9.7 0.0 2.0 2 0 0 2 2 2 0 GDP dissociation inhibitor 3HCDH_N PF02737.13 gi|330835258|ref|YP_004409986.1| - 0.077 12.6 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|330835258|ref|YP_004409986.1| - 0.081 13.1 0.0 0.19 12.0 0.0 1.9 1 1 0 1 1 1 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|330835258|ref|YP_004409986.1| - 0.082 12.6 0.0 0.21 11.3 0.0 1.7 1 0 0 1 1 1 0 FAD-NAD(P)-binding Metallophos_2 PF12850.2 gi|330835261|ref|YP_004409989.1| - 1.6e-10 41.0 0.0 1.9e-10 40.8 0.0 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DUF4445 PF14574.1 gi|330835261|ref|YP_004409989.1| - 0.062 11.5 0.0 0.072 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4445) Asparaginase_2 PF01112.13 gi|330835262|ref|YP_004409990.1| - 1.1e-56 191.9 1.9 3e-38 131.3 0.1 2.0 1 1 1 2 2 2 2 Asparaginase UBA PF00627.26 gi|330835262|ref|YP_004409990.1| - 0.089 12.6 0.0 0.71 9.7 0.0 2.2 2 0 0 2 2 2 0 UBA/TS-N domain Pyr_redox_2 PF07992.9 gi|330835264|ref|YP_004409992.1| - 7.8e-10 38.9 0.0 2.3e-09 37.4 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330835264|ref|YP_004409992.1| - 1.2e-06 27.7 0.1 0.00013 21.0 0.2 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|330835264|ref|YP_004409992.1| - 2.8e-06 27.2 0.1 7.9e-06 25.8 0.0 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|330835264|ref|YP_004409992.1| - 0.00021 19.8 0.0 0.0021 16.6 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|330835264|ref|YP_004409992.1| - 0.00092 19.5 0.2 0.0036 17.6 0.0 2.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|330835264|ref|YP_004409992.1| - 0.0013 18.5 0.0 0.57 9.9 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|330835264|ref|YP_004409992.1| - 0.0028 17.7 0.0 0.02 14.9 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330835264|ref|YP_004409992.1| - 0.012 14.5 0.0 0.086 11.6 0.0 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|330835264|ref|YP_004409992.1| - 0.033 13.2 0.0 1.7 7.6 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.14 gi|330835264|ref|YP_004409992.1| - 0.093 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.7 gi|330835264|ref|YP_004409992.1| - 0.11 11.3 0.1 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein HTH_AsnC-type PF13404.1 gi|330835265|ref|YP_004409993.1| - 1.3e-16 59.8 0.2 2.4e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|330835265|ref|YP_004409993.1| - 5.4e-16 58.0 0.3 7.9e-16 57.5 0.2 1.3 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|330835265|ref|YP_004409993.1| - 1.8e-15 56.0 0.2 1.8e-15 56.0 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330835265|ref|YP_004409993.1| - 1.2e-05 24.7 0.2 4.3e-05 23.0 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|330835265|ref|YP_004409993.1| - 2.9e-05 23.6 0.1 0.0001 21.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|330835265|ref|YP_004409993.1| - 0.00081 19.1 0.0 0.0024 17.6 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|330835265|ref|YP_004409993.1| - 0.00088 19.5 0.3 0.017 15.4 0.0 2.5 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|330835265|ref|YP_004409993.1| - 0.0015 18.0 0.0 0.0044 16.5 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Mga PF08280.6 gi|330835265|ref|YP_004409993.1| - 0.002 17.8 0.0 0.0042 16.8 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|330835265|ref|YP_004409993.1| - 0.0022 17.6 0.1 0.0074 15.9 0.0 1.8 2 0 0 2 2 2 1 MarR family Mga PF05043.8 gi|330835265|ref|YP_004409993.1| - 0.0032 17.6 0.1 0.0077 16.4 0.0 1.7 1 1 0 1 1 1 1 Mga helix-turn-helix domain HTH_5 PF01022.15 gi|330835265|ref|YP_004409993.1| - 0.0049 16.4 0.2 0.014 15.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Tnp_ISL3 PF13542.1 gi|330835265|ref|YP_004409993.1| - 0.0055 15.8 0.0 0.023 13.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.14 gi|330835265|ref|YP_004409993.1| - 0.013 15.2 1.5 0.081 12.6 0.1 2.6 1 1 2 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|330835265|ref|YP_004409993.1| - 0.022 14.7 0.0 0.043 13.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|330835265|ref|YP_004409993.1| - 0.023 14.0 0.1 0.32 10.3 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 ACT_4 PF13291.1 gi|330835265|ref|YP_004409993.1| - 0.025 14.8 0.0 0.2 12.0 0.0 2.2 2 0 0 2 2 2 0 ACT domain PCI PF01399.22 gi|330835265|ref|YP_004409993.1| - 0.05 13.9 0.3 0.16 12.2 0.0 1.9 2 1 0 2 2 2 0 PCI domain HTH_23 PF13384.1 gi|330835265|ref|YP_004409993.1| - 0.12 12.1 0.1 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain PNP_UDP_1 PF01048.15 gi|330835266|ref|YP_004409994.1| - 3.8e-45 153.7 0.0 4.3e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily AdoMet_Synthase PF01941.14 gi|330835267|ref|YP_004409995.1| - 0.12 10.8 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 S-adenosylmethionine synthetase (AdoMet synthetase) polyprenyl_synt PF00348.12 gi|330835268|ref|YP_004409996.1| - 2.5e-35 121.6 0.1 3.6e-35 121.0 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RimK PF08443.6 gi|330835269|ref|YP_004409997.1| - 5.3e-36 123.8 0.0 7.3e-36 123.4 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330835269|ref|YP_004409997.1| - 2.3e-13 50.2 0.0 3.4e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|330835269|ref|YP_004409997.1| - 1.1e-11 44.2 0.0 1.7e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330835269|ref|YP_004409997.1| - 3.2e-10 39.2 0.0 1.3e-09 37.2 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|330835269|ref|YP_004409997.1| - 2.7e-09 37.1 0.0 5e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Synapsin_C PF02750.9 gi|330835269|ref|YP_004409997.1| - 0.0017 17.5 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Synapsin, ATP binding domain ATPgrasp_YheCD PF14398.1 gi|330835269|ref|YP_004409997.1| - 0.0017 17.2 0.0 0.07 11.9 0.0 2.2 2 0 0 2 2 2 1 YheC/D like ATP-grasp Ins134_P3_kin PF05770.6 gi|330835269|ref|YP_004409997.1| - 0.05 12.6 0.0 0.72 8.8 0.0 2.1 1 1 1 2 2 2 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase TP_methylase PF00590.15 gi|330835270|ref|YP_004409998.1| - 8.9e-27 94.1 0.0 1.1e-26 93.8 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|330835271|ref|YP_004409999.1| - 8.3e-37 126.9 0.0 9.6e-37 126.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|330835271|ref|YP_004409999.1| - 0.0096 16.1 0.0 0.016 15.4 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily MULE PF10551.4 gi|330835271|ref|YP_004409999.1| - 0.0097 16.0 0.0 0.019 15.1 0.0 1.4 1 0 0 1 1 1 1 MULE transposase domain Band_7 PF01145.20 gi|330835272|ref|YP_004410000.1| - 5.7e-37 127.3 1.6 8.1e-37 126.8 1.1 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|330835272|ref|YP_004410000.1| - 0.016 14.7 0.2 0.045 13.2 0.1 1.7 2 0 0 2 2 2 0 SPFH domain-Band 7 family CitX PF03802.9 gi|330835272|ref|YP_004410000.1| - 0.048 13.1 0.1 0.068 12.5 0.1 1.2 1 0 0 1 1 1 0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RBFA PF02033.13 gi|330835272|ref|YP_004410000.1| - 0.16 12.0 0.9 0.43 10.6 0.1 2.0 2 0 0 2 2 2 0 Ribosome-binding factor A Thermopsin PF05317.6 gi|330835273|ref|YP_004410001.1| - 3.2e-47 160.7 6.0 3.2e-47 160.7 4.2 1.9 2 0 0 2 2 2 1 Thermopsin DUF1861 PF08950.5 gi|330835273|ref|YP_004410001.1| - 0.02 13.7 0.1 0.036 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) FeoB_N PF02421.13 gi|330835273|ref|YP_004410001.1| - 0.025 13.8 0.0 2.9 7.1 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B NfeD PF01957.13 gi|330835274|ref|YP_004410002.1| - 9.4e-16 58.2 0.6 1.4e-15 57.6 0.4 1.2 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding MMPL PF03176.10 gi|330835274|ref|YP_004410002.1| - 0.06 12.0 3.4 0.07 11.8 2.3 1.1 1 0 0 1 1 1 0 MMPL family IgaA PF07095.6 gi|330835274|ref|YP_004410002.1| - 0.13 9.9 0.1 0.17 9.6 0.1 1.1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA TctA PF01970.11 gi|330835274|ref|YP_004410002.1| - 5.7 5.2 7.4 6.7 5.0 5.1 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctA family TMEM154 PF15102.1 gi|330835274|ref|YP_004410002.1| - 9 5.9 9.8 3.1 7.4 0.0 2.1 2 0 0 2 2 2 0 TMEM154 protein family AIG2 PF06094.7 gi|330835276|ref|YP_004410004.1| - 5.3e-24 84.6 9.1 1.4e-16 60.8 1.9 2.2 2 0 0 2 2 2 2 AIG2-like family AIG2_2 PF13772.1 gi|330835276|ref|YP_004410004.1| - 1.9e-14 53.5 2.4 2e-09 37.4 0.1 2.2 2 0 0 2 2 2 2 AIG2-like family ChaC PF04752.7 gi|330835276|ref|YP_004410004.1| - 0.00069 19.6 3.0 0.13 12.1 0.3 2.3 2 0 0 2 2 2 2 ChaC-like protein Pterin_4a PF01329.14 gi|330835277|ref|YP_004410005.1| - 1.1e-27 95.5 0.0 1.2e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase Cdc6_C PF09079.6 gi|330835278|ref|YP_004410006.1| - 2.3e-15 56.0 0.1 5.5e-15 54.8 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|330835278|ref|YP_004410006.1| - 2.8e-08 33.9 0.0 7.6e-08 32.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|330835278|ref|YP_004410006.1| - 3.1e-08 33.8 0.0 8e-08 32.5 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|330835278|ref|YP_004410006.1| - 1.7e-05 23.8 0.1 4.2e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain Arch_ATPase PF01637.13 gi|330835278|ref|YP_004410006.1| - 0.0056 16.4 2.0 0.011 15.4 0.4 2.1 2 0 0 2 2 2 1 Archaeal ATPase DUF87 PF01935.12 gi|330835278|ref|YP_004410006.1| - 0.024 14.4 0.0 0.068 12.9 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|330835278|ref|YP_004410006.1| - 0.041 13.3 0.0 0.29 10.5 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain Tropomyosin_1 PF12718.2 gi|330835279|ref|YP_004410007.1| - 0.0018 18.1 5.9 0.0021 17.9 4.1 1.0 1 0 0 1 1 1 1 Tropomyosin like Imm29 PF15575.1 gi|330835279|ref|YP_004410007.1| - 0.003 17.1 0.1 0.0031 17.1 0.1 1.1 1 0 0 1 1 1 1 Immunity protein 29 Seryl_tRNA_N PF02403.17 gi|330835279|ref|YP_004410007.1| - 0.0067 16.4 7.0 0.33 10.9 1.9 2.1 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain SWI-SNF_Ssr4 PF08549.5 gi|330835279|ref|YP_004410007.1| - 0.009 14.3 0.7 0.009 14.3 0.5 1.3 2 0 0 2 2 2 1 Fungal domain of unknown function (DUF1750) Occludin_ELL PF07303.8 gi|330835279|ref|YP_004410007.1| - 0.016 15.9 3.5 0.016 15.9 2.4 1.6 1 1 0 1 1 1 0 Occludin homology domain Spectrin PF00435.16 gi|330835279|ref|YP_004410007.1| - 0.032 14.5 4.0 1.7 8.9 0.1 2.1 1 1 1 2 2 2 0 Spectrin repeat Plasmodium_Vir PF05795.6 gi|330835279|ref|YP_004410007.1| - 0.042 13.0 2.3 0.047 12.8 1.6 1.1 1 0 0 1 1 1 0 Plasmodium vivax Vir protein DUF2360 PF10152.4 gi|330835279|ref|YP_004410007.1| - 0.044 14.0 0.1 0.054 13.7 0.0 1.2 1 1 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) CAP_N PF01213.14 gi|330835279|ref|YP_004410007.1| - 0.09 12.0 0.1 0.1 11.8 0.1 1.1 1 0 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Laminin_II PF06009.7 gi|330835279|ref|YP_004410007.1| - 0.096 12.4 2.8 7.9 6.2 0.1 2.5 2 1 1 3 3 3 0 Laminin Domain II Nup54 PF13874.1 gi|330835279|ref|YP_004410007.1| - 0.12 12.0 4.1 0.78 9.3 2.9 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Lipoprotein_20 PF13942.1 gi|330835279|ref|YP_004410007.1| - 0.13 11.8 4.1 0.63 9.5 1.2 2.1 2 0 0 2 2 2 0 YfhG lipoprotein DUF2508 PF10704.4 gi|330835279|ref|YP_004410007.1| - 0.13 12.4 3.8 0.48 10.6 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2508) DUF4140 PF13600.1 gi|330835279|ref|YP_004410007.1| - 0.2 12.1 5.0 0.74 10.3 0.1 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) SYCE1 PF15233.1 gi|330835279|ref|YP_004410007.1| - 0.28 11.1 6.2 0.53 10.2 4.3 1.5 1 1 0 1 1 1 0 Synaptonemal complex central element protein 1 DUF972 PF06156.8 gi|330835279|ref|YP_004410007.1| - 0.34 11.2 6.0 7.1 7.0 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) DUF342 PF03961.8 gi|330835279|ref|YP_004410007.1| - 1.5 7.1 5.9 2 6.7 4.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) EMP24_GP25L PF01105.19 gi|330835279|ref|YP_004410007.1| - 1.8 8.2 5.9 16 5.1 4.1 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Fzo_mitofusin PF04799.8 gi|330835279|ref|YP_004410007.1| - 1.9 7.8 5.4 5.6 6.3 1.0 2.0 1 1 1 2 2 2 0 fzo-like conserved region FlaC_arch PF05377.6 gi|330835279|ref|YP_004410007.1| - 2 8.3 10.6 6.1 6.8 0.5 3.0 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Prefoldin_2 PF01920.15 gi|330835279|ref|YP_004410007.1| - 2.1 8.1 10.2 1.3 8.8 0.1 2.6 2 1 0 2 2 2 0 Prefoldin subunit Iso_dh PF00180.15 gi|330835280|ref|YP_004410008.1| - 8.7e-107 357.0 0.1 1e-106 356.8 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Methyltransf_11 PF08241.7 gi|330835281|ref|YP_004410009.1| - 7.2e-14 52.0 0.0 9.4e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330835281|ref|YP_004410009.1| - 6.6e-10 38.7 0.0 7.7e-10 38.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|330835281|ref|YP_004410009.1| - 1.3e-09 37.9 0.0 1.7e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330835281|ref|YP_004410009.1| - 1.6e-08 35.0 0.0 2.2e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|330835281|ref|YP_004410009.1| - 3.5e-08 33.7 0.0 4.6e-08 33.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|330835281|ref|YP_004410009.1| - 4.8e-07 29.1 0.0 5.9e-07 28.8 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|330835281|ref|YP_004410009.1| - 5e-07 29.7 0.0 7.3e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330835281|ref|YP_004410009.1| - 2.2e-06 27.1 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.7 gi|330835281|ref|YP_004410009.1| - 4.1e-05 23.9 0.0 5.5e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330835281|ref|YP_004410009.1| - 0.00011 21.4 0.0 0.00014 21.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.11 gi|330835281|ref|YP_004410009.1| - 0.003 15.9 0.0 0.0037 15.6 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.15 gi|330835281|ref|YP_004410009.1| - 0.031 13.3 0.0 0.041 12.9 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Pro-kuma_activ PF09286.6 gi|330835282|ref|YP_004410010.1| - 6.4e-10 39.2 0.1 2e-09 37.6 0.1 1.8 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.17 gi|330835282|ref|YP_004410010.1| - 1.4e-07 30.9 0.3 2.7e-07 30.0 0.2 1.4 1 0 0 1 1 1 1 Subtilase family JHBP PF06585.6 gi|330835283|ref|YP_004410011.1| - 0.13 11.0 0.3 0.23 10.2 0.1 1.4 1 1 0 1 1 1 0 Haemolymph juvenile hormone binding protein (JHBP) Tmemb_cc2 PF10267.4 gi|330835284|ref|YP_004410012.1| - 0.034 12.7 21.4 0.65 8.5 5.2 2.6 1 1 1 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Prominin PF05478.6 gi|330835284|ref|YP_004410012.1| - 0.42 8.0 5.9 0.36 8.3 3.3 1.4 1 1 0 1 1 1 0 Prominin Semialdhyde_dh PF01118.19 gi|330835286|ref|YP_004410014.1| - 4e-30 104.6 0.0 1.2e-29 103.0 0.0 1.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|330835286|ref|YP_004410014.1| - 5.5e-21 75.2 0.0 7.7e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain ILVD_EDD PF00920.16 gi|330835288|ref|YP_004410016.1| - 5.9e-216 717.9 0.2 6.7e-216 717.7 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family PMSR PF01625.16 gi|330835289|ref|YP_004410017.1| - 2.2e-52 177.0 0.2 2.5e-52 176.8 0.2 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase TGS PF02824.16 gi|330835290|ref|YP_004410018.1| - 4.2e-19 68.1 0.0 7.1e-19 67.4 0.0 1.4 1 0 0 1 1 1 1 TGS domain DUF1880 PF08976.6 gi|330835290|ref|YP_004410018.1| - 0.0032 17.5 0.0 0.0061 16.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1880) RNase_HII PF01351.13 gi|330835291|ref|YP_004410019.1| - 1.2e-45 155.6 0.0 1.3e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII NMD3 PF04981.8 gi|330835292|ref|YP_004410020.1| - 1.3e-45 155.3 6.1 1.5e-45 155.2 4.2 1.0 1 0 0 1 1 1 1 NMD3 family DZR PF12773.2 gi|330835292|ref|YP_004410020.1| - 0.069 12.9 4.7 1.3 8.8 2.0 2.8 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|330835292|ref|YP_004410020.1| - 0.078 12.9 3.3 0.83 9.6 0.2 3.1 3 0 0 3 3 3 0 Zinc ribbon domain DUF2072 PF09845.4 gi|330835292|ref|YP_004410020.1| - 0.33 10.9 5.2 0.18 11.7 1.3 2.3 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF424 PF04242.8 gi|330835293|ref|YP_004410021.1| - 6.3e-24 83.8 1.2 7.1e-24 83.6 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) eIF-5_eIF-2B PF01873.12 gi|330835294|ref|YP_004410022.1| - 1.5e-29 102.1 0.5 1.8e-29 101.9 0.3 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DUF2387 PF09526.5 gi|330835294|ref|YP_004410022.1| - 0.0032 17.3 0.4 0.0058 16.5 0.3 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Elf1 PF05129.8 gi|330835294|ref|YP_004410022.1| - 0.066 12.9 0.8 0.12 12.0 0.6 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Ribosomal_S27e PF01667.12 gi|330835294|ref|YP_004410022.1| - 0.11 12.0 0.8 0.21 11.1 0.6 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 Cys_rich_KTR PF14205.1 gi|330835294|ref|YP_004410022.1| - 0.15 11.5 6.4 0.7 9.3 0.1 2.9 2 1 1 3 3 3 0 Cysteine-rich KTR Radical_SAM PF04055.16 gi|330835295|ref|YP_004410023.1| - 7e-27 94.6 0.3 5.3e-26 91.7 0.1 2.1 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|330835295|ref|YP_004410023.1| - 2.2e-20 72.3 0.1 3.7e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|330835295|ref|YP_004410023.1| - 3.1e-08 33.2 0.0 6.9e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 TRAM domain NAD_binding_10 PF13460.1 gi|330835295|ref|YP_004410023.1| - 0.017 15.1 0.0 0.05 13.6 0.0 1.7 2 0 0 2 2 2 0 NADH(P)-binding Thiolase_N PF00108.18 gi|330835296|ref|YP_004410024.1| - 1.3e-89 299.6 0.4 1.6e-89 299.3 0.3 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|330835296|ref|YP_004410024.1| - 2.6e-37 126.9 0.0 7.6e-37 125.4 0.0 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|330835296|ref|YP_004410024.1| - 1e-05 25.1 2.0 9.9e-05 21.9 1.0 2.2 1 1 1 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|330835296|ref|YP_004410024.1| - 0.14 11.8 1.2 6.4 6.5 0.2 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KH_1 PF00013.24 gi|330835297|ref|YP_004410025.1| - 5.2e-08 32.4 2.3 9.3e-08 31.6 1.6 1.4 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|330835297|ref|YP_004410025.1| - 5.3e-05 22.7 0.7 9.9e-05 21.8 0.5 1.4 1 0 0 1 1 1 1 KH domain CAAD PF14159.1 gi|330835297|ref|YP_004410025.1| - 0.064 12.8 0.0 0.21 11.2 0.0 1.8 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase RIO1 PF01163.17 gi|330835298|ref|YP_004410026.1| - 1.1e-52 178.1 0.1 1.3e-52 177.9 0.1 1.0 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|330835298|ref|YP_004410026.1| - 5.8e-06 25.6 0.0 8.8e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|330835298|ref|YP_004410026.1| - 1.7e-05 24.6 0.0 4.2e-05 23.4 0.0 1.5 1 1 1 2 2 2 1 Phosphotransferase enzyme family Kdo PF06293.9 gi|330835298|ref|YP_004410026.1| - 0.0047 16.0 0.1 0.24 10.4 0.0 2.1 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family UPF0552 PF10574.4 gi|330835298|ref|YP_004410026.1| - 0.048 13.1 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0552 DUF4479 PF14794.1 gi|330835298|ref|YP_004410026.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Pkinase_Tyr PF07714.12 gi|330835298|ref|YP_004410026.1| - 0.15 11.1 0.1 0.28 10.1 0.1 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase eIF-1a PF01176.14 gi|330835299|ref|YP_004410027.1| - 2.8e-26 90.7 0.2 3.8e-26 90.2 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3883 PF13020.1 gi|330835300|ref|YP_004410028.1| - 0.00093 18.8 0.0 0.0018 17.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ECH PF00378.15 gi|330835301|ref|YP_004410029.1| - 2.7e-26 92.2 0.0 3.2e-26 91.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ABC2_membrane_3 PF12698.2 gi|330835302|ref|YP_004410030.1| - 5.7e-14 51.9 29.9 7.5e-14 51.5 20.7 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|330835302|ref|YP_004410030.1| - 8.1e-13 48.0 14.0 8.1e-13 48.0 9.7 2.7 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_4 PF12730.2 gi|330835302|ref|YP_004410030.1| - 0.15 11.1 31.9 0.51 9.4 22.1 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|330835303|ref|YP_004410031.1| - 1.3e-30 106.4 0.0 1.9e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835303|ref|YP_004410031.1| - 5.6e-14 52.7 0.0 2.5e-09 37.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|330835303|ref|YP_004410031.1| - 0.0016 17.9 0.1 1.3 8.3 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain SbcCD_C PF13558.1 gi|330835303|ref|YP_004410031.1| - 0.0024 17.7 0.0 0.014 15.2 0.0 2.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|330835303|ref|YP_004410031.1| - 0.0025 16.9 0.0 0.29 10.1 0.0 2.3 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|330835303|ref|YP_004410031.1| - 0.0028 17.1 0.1 0.0067 15.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|330835303|ref|YP_004410031.1| - 0.0031 16.7 0.0 0.2 10.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|330835303|ref|YP_004410031.1| - 0.0032 17.8 0.7 0.0043 17.4 0.5 1.5 1 1 0 1 1 1 1 AAA domain KdpD PF02702.12 gi|330835303|ref|YP_004410031.1| - 0.0051 15.9 0.0 0.0073 15.4 0.0 1.2 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA PF00004.24 gi|330835303|ref|YP_004410031.1| - 0.018 15.2 0.2 0.13 12.4 0.1 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|330835303|ref|YP_004410031.1| - 0.022 14.3 0.0 0.058 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|330835303|ref|YP_004410031.1| - 0.036 14.2 0.1 0.67 10.1 0.0 2.3 2 1 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|330835303|ref|YP_004410031.1| - 0.047 13.4 0.3 0.46 10.1 0.1 2.0 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|330835303|ref|YP_004410031.1| - 0.053 13.1 0.1 0.096 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|330835303|ref|YP_004410031.1| - 0.057 12.8 0.1 0.092 12.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|330835303|ref|YP_004410031.1| - 0.057 13.3 0.0 0.07 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|330835303|ref|YP_004410031.1| - 0.099 11.8 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|330835303|ref|YP_004410031.1| - 0.17 10.5 0.0 0.23 10.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Fer4_10 PF13237.1 gi|330835304|ref|YP_004410032.1| - 3.1e-06 26.8 6.5 5.1e-06 26.1 4.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835304|ref|YP_004410032.1| - 3.9e-06 27.1 6.5 1.1e-05 25.7 4.6 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835304|ref|YP_004410032.1| - 2.8e-05 24.2 7.9 5.2e-05 23.4 5.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835304|ref|YP_004410032.1| - 7.8e-05 22.3 10.4 0.027 14.3 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330835304|ref|YP_004410032.1| - 0.00011 21.9 9.8 0.092 12.7 0.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835304|ref|YP_004410032.1| - 0.00012 22.0 4.9 0.0012 18.8 3.5 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330835304|ref|YP_004410032.1| - 0.00025 20.8 1.3 0.00058 19.6 0.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835304|ref|YP_004410032.1| - 0.0005 19.5 14.2 0.0015 17.9 0.5 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330835304|ref|YP_004410032.1| - 0.01 16.5 2.6 0.73 10.6 0.0 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|330835304|ref|YP_004410032.1| - 0.023 15.1 9.1 0.77 10.2 0.2 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330835304|ref|YP_004410032.1| - 0.12 12.6 7.4 4.7 7.6 5.1 2.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835304|ref|YP_004410032.1| - 0.23 11.3 6.4 0.51 10.2 4.4 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330835304|ref|YP_004410032.1| - 0.49 11.0 13.5 2.8 8.6 0.9 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330835304|ref|YP_004410032.1| - 0.76 9.4 5.8 0.16 11.5 1.0 1.9 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.2 gi|330835304|ref|YP_004410032.1| - 9.8 6.8 10.7 4.5 7.8 2.4 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain COX1 PF00115.15 gi|330835305|ref|YP_004410033.1| - 3.6e-64 217.0 59.8 3.6e-64 217.0 41.4 1.6 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I Rdx PF10262.4 gi|330835306|ref|YP_004410034.1| - 4.8e-17 61.7 0.0 5.3e-17 61.6 0.0 1.0 1 0 0 1 1 1 1 Rdx family DUF3834 PF12916.2 gi|330835306|ref|YP_004410034.1| - 0.11 11.4 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) Radical_SAM PF04055.16 gi|330835308|ref|YP_004410036.1| - 3.2e-06 27.4 0.7 7.9e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330835308|ref|YP_004410036.1| - 0.01 15.9 0.0 0.032 14.3 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain tRNA-synt_1 PF00133.17 gi|330835309|ref|YP_004410037.1| - 9.5e-61 205.5 0.0 5.9e-50 169.8 0.0 2.3 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|330835309|ref|YP_004410037.1| - 3.6e-28 98.3 0.6 1.4e-12 46.9 0.0 4.2 3 1 1 4 4 4 4 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|330835309|ref|YP_004410037.1| - 2.8e-18 66.1 0.8 6.4e-18 64.9 0.6 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|330835309|ref|YP_004410037.1| - 5.8e-11 42.0 0.0 1.3e-05 24.5 0.0 2.9 3 0 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|330835309|ref|YP_004410037.1| - 6.5e-11 41.8 0.0 1.3e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 Wzy_C PF04932.10 gi|330835310|ref|YP_004410038.1| - 0.00088 19.0 0.2 0.0013 18.5 0.1 1.2 1 0 0 1 1 1 1 O-Antigen ligase DUF846 PF05832.7 gi|330835310|ref|YP_004410038.1| - 0.0048 16.6 0.2 0.0071 16.0 0.1 1.2 1 0 0 1 1 1 1 Eukaryotic protein of unknown function (DUF846) IncA PF04156.9 gi|330835310|ref|YP_004410038.1| - 0.018 14.6 1.1 0.069 12.7 0.0 2.1 2 1 0 2 2 2 0 IncA protein NQR2_RnfD_RnfE PF03116.10 gi|330835310|ref|YP_004410038.1| - 0.053 12.6 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 NQR2, RnfD, RnfE family MAS20 PF02064.10 gi|330835310|ref|YP_004410038.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 MAS20 protein import receptor DUF4199 PF13858.1 gi|330835310|ref|YP_004410038.1| - 0.06 13.2 0.9 0.097 12.5 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) DUF2899 PF11449.3 gi|330835310|ref|YP_004410038.1| - 0.12 11.5 0.1 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2899) DUF4448 PF14610.1 gi|330835310|ref|YP_004410038.1| - 0.12 11.8 0.0 5.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4448) Peptidase_M1 PF01433.15 gi|330835311|ref|YP_004410039.1| - 1.1e-107 360.5 0.0 1.8e-107 359.8 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M1 ERAP1_C PF11838.3 gi|330835311|ref|YP_004410039.1| - 1.5e-21 76.9 0.1 2.3e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Peptidase_MA_2 PF13485.1 gi|330835311|ref|YP_004410039.1| - 2.9e-20 72.6 0.4 8.4e-20 71.1 0.1 1.9 2 0 0 2 2 2 1 Peptidase MA superfamily DUF4306 PF14154.1 gi|330835311|ref|YP_004410039.1| - 0.064 13.2 0.2 0.29 11.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4306) 7kD_DNA_binding PF02294.13 gi|330835312|ref|YP_004410040.1| - 3.5e-35 119.5 4.8 3.9e-35 119.3 3.3 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain KorB_C PF06613.6 gi|330835312|ref|YP_004410040.1| - 0.054 12.9 0.0 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 KorB C-terminal beta-barrel domain Ribosomal_S5 PF00333.15 gi|330835312|ref|YP_004410040.1| - 0.17 11.6 0.8 0.32 10.7 0.5 1.5 1 1 0 1 1 1 0 Ribosomal protein S5, N-terminal domain GTPase_Cys_C PF12631.2 gi|330835313|ref|YP_004410041.1| - 0.13 12.6 0.1 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE FUSC-like PF12805.2 gi|330835315|ref|YP_004410043.1| - 6.6 5.5 6.3 9.7 5.0 4.4 1.3 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Nol1_Nop2_Fmu PF01189.12 gi|330835316|ref|YP_004410044.1| - 2.3e-35 122.3 0.0 2.9e-35 122.0 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family PCMT PF01135.14 gi|330835316|ref|YP_004410044.1| - 1.7e-06 27.7 0.0 2.5e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|330835316|ref|YP_004410044.1| - 9.1e-06 25.3 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|330835316|ref|YP_004410044.1| - 0.00041 19.7 0.0 0.00064 19.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.14 gi|330835316|ref|YP_004410044.1| - 0.0044 17.0 0.0 0.0094 15.9 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.13 gi|330835316|ref|YP_004410044.1| - 0.0047 16.0 0.0 0.0073 15.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family RrnaAD PF00398.15 gi|330835316|ref|YP_004410044.1| - 0.005 15.8 0.0 0.0074 15.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|330835316|ref|YP_004410044.1| - 0.0066 16.7 0.0 0.012 16.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|330835316|ref|YP_004410044.1| - 0.012 14.6 0.0 0.023 13.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.2 gi|330835316|ref|YP_004410044.1| - 0.098 13.2 0.0 0.17 12.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain HAD_2 PF13419.1 gi|330835318|ref|YP_004410046.1| - 6.5e-21 75.3 0.0 7.7e-21 75.0 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330835318|ref|YP_004410046.1| - 6.1e-14 52.9 0.0 3.2e-12 47.3 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330835318|ref|YP_004410046.1| - 7.9e-05 22.9 0.0 0.00012 22.3 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330835318|ref|YP_004410046.1| - 0.00012 21.6 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|330835318|ref|YP_004410046.1| - 0.043 13.7 0.0 0.57 10.1 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF790 PF05626.6 gi|330835319|ref|YP_004410047.1| - 4.6e-103 344.6 5.4 7.2e-103 344.0 3.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF790) HTH_DeoR PF08220.7 gi|330835319|ref|YP_004410047.1| - 1.9e-05 24.0 0.1 0.00021 20.7 0.0 2.8 4 0 0 4 4 4 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|330835319|ref|YP_004410047.1| - 0.00075 19.0 0.1 0.0098 15.5 0.0 2.9 3 0 0 3 3 3 1 HTH domain HTH_Mga PF08280.6 gi|330835319|ref|YP_004410047.1| - 0.0048 16.6 0.0 0.041 13.6 0.0 2.6 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain Put_DNA-bind_N PF06971.8 gi|330835319|ref|YP_004410047.1| - 0.0066 16.1 1.4 0.61 9.8 0.1 4.0 3 1 0 3 3 3 1 Putative DNA-binding protein N-terminus HTH_AraC PF00165.18 gi|330835319|ref|YP_004410047.1| - 0.05 13.4 0.0 1.2 9.0 0.0 2.9 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family MHC_II_alpha PF00993.15 gi|330835319|ref|YP_004410047.1| - 0.054 13.0 0.1 13 5.4 0.0 2.5 2 0 0 2 2 2 0 Class II histocompatibility antigen, alpha domain HTH_23 PF13384.1 gi|330835319|ref|YP_004410047.1| - 0.096 12.3 0.0 1.2 8.8 0.0 2.6 3 0 0 3 3 3 0 Homeodomain-like domain PqqD PF05402.7 gi|330835319|ref|YP_004410047.1| - 0.11 12.5 0.2 4.5 7.3 0.0 2.5 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) ResIII PF04851.10 gi|330835320|ref|YP_004410048.1| - 1.4e-23 83.7 0.0 7e-22 78.1 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|330835320|ref|YP_004410048.1| - 6.6e-17 61.1 0.0 1.9e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|330835320|ref|YP_004410048.1| - 1.1e-11 44.5 0.0 8.7e-11 41.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|330835320|ref|YP_004410048.1| - 6.5e-09 34.9 0.1 4.1e-07 29.0 0.0 2.8 1 1 1 2 2 2 2 SNF2 family N-terminal domain DUF896 PF05979.7 gi|330835320|ref|YP_004410048.1| - 0.11 12.0 1.9 0.48 10.0 0.8 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF896) Lactamase_B_2 PF12706.2 gi|330835321|ref|YP_004410049.1| - 1e-06 28.4 0.1 1.3e-06 28.1 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330835321|ref|YP_004410049.1| - 4.7e-06 26.3 1.6 2.5e-05 24.0 1.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330835321|ref|YP_004410049.1| - 0.00011 21.9 0.1 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DHH PF01368.15 gi|330835321|ref|YP_004410049.1| - 0.029 14.0 2.1 0.36 10.4 1.5 2.2 1 1 0 1 1 1 0 DHH family LacI PF00356.16 gi|330835321|ref|YP_004410049.1| - 0.03 13.9 0.1 0.068 12.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_8 PF02954.14 gi|330835321|ref|YP_004410049.1| - 0.11 12.0 0.1 0.28 10.7 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family VIT1 PF01988.14 gi|330835322|ref|YP_004410050.1| - 9.8e-53 178.7 1.4 1.1e-52 178.5 1.0 1.0 1 0 0 1 1 1 1 VIT family AAA_assoc_C PF09821.4 gi|330835323|ref|YP_004410051.1| - 2.3e-36 124.6 0.1 3.1e-36 124.2 0.1 1.2 1 0 0 1 1 1 1 C-terminal AAA-associated domain Glyco_hydro_80 PF13647.1 gi|330835323|ref|YP_004410051.1| - 0.046 12.9 0.0 0.065 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A PaREP1 PF05942.6 gi|330835326|ref|YP_004410054.1| - 6.5e-11 42.1 0.2 1.4e-10 41.0 0.1 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family GH-E PF14410.1 gi|330835326|ref|YP_004410054.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 HNH/ENDO VII superfamily nuclease with conserved GHE residues Phage_tail_2 PF06199.6 gi|330835327|ref|YP_004410055.1| - 0.044 13.8 0.2 0.05 13.6 0.1 1.0 1 0 0 1 1 1 0 Phage major tail protein 2 HTH_24 PF13412.1 gi|330835328|ref|YP_004410056.1| - 2e-06 27.0 1.0 3.6e-06 26.2 0.7 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330835328|ref|YP_004410056.1| - 2.7e-05 23.7 0.3 5.3e-05 22.8 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|330835328|ref|YP_004410056.1| - 0.00056 19.8 0.2 0.00093 19.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330835328|ref|YP_004410056.1| - 0.00061 19.3 0.0 0.0009 18.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|330835328|ref|YP_004410056.1| - 0.00062 19.2 0.6 0.0013 18.2 0.4 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|330835328|ref|YP_004410056.1| - 0.013 15.2 0.1 0.022 14.4 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_43 PF09904.4 gi|330835328|ref|YP_004410056.1| - 0.1 12.3 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_20 PF12840.2 gi|330835328|ref|YP_004410056.1| - 0.13 12.0 0.1 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF1049 PF06305.6 gi|330835329|ref|YP_004410057.1| - 0.28 10.7 2.9 0.3 10.5 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1049) NPCBM_assoc PF10633.4 gi|330835330|ref|YP_004410058.1| - 5.8e-10 39.0 15.3 0.013 15.5 0.0 8.7 8 3 0 8 8 8 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|330835330|ref|YP_004410058.1| - 7.4e-05 22.7 28.7 0.38 10.8 0.3 7.4 6 1 2 8 8 8 6 CARDB DUF11 PF01345.13 gi|330835330|ref|YP_004410058.1| - 0.0044 17.0 30.6 4.3 7.4 1.0 7.0 6 0 0 6 6 6 4 Domain of unknown function DUF11 AP3B1_C PF14796.1 gi|330835330|ref|YP_004410058.1| - 0.021 14.5 0.3 13 5.4 0.0 3.1 3 0 0 3 3 3 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal EIAV_Rev PF11129.3 gi|330835330|ref|YP_004410058.1| - 0.13 12.2 0.0 17 5.4 0.0 2.3 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus Phage_fiber_2 PF03406.8 gi|330835330|ref|YP_004410058.1| - 0.35 10.5 1.9 22 4.7 0.1 2.5 2 0 0 2 2 2 0 Phage tail fibre repeat DUF4346 PF14251.1 gi|330835331|ref|YP_004410059.1| - 6.2e-05 22.7 0.0 0.00017 21.2 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4346) CbiC PF02570.10 gi|330835331|ref|YP_004410059.1| - 0.028 13.8 0.0 0.051 12.9 0.0 1.4 1 0 0 1 1 1 0 Precorrin-8X methylmutase Pterin_bind PF00809.17 gi|330835331|ref|YP_004410059.1| - 0.04 13.2 0.0 0.12 11.6 0.0 1.8 1 1 0 1 1 1 0 Pterin binding enzyme DUF512 PF04459.7 gi|330835331|ref|YP_004410059.1| - 0.093 11.7 0.0 0.18 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF512) PTPS PF01242.14 gi|330835333|ref|YP_004410061.1| - 1.5e-24 86.0 0.0 1.8e-24 85.7 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase HEPN PF05168.9 gi|330835336|ref|YP_004410064.1| - 0.0014 18.5 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 HEPN domain MAF_flag10 PF01973.13 gi|330835338|ref|YP_004410066.1| - 3e-23 82.1 0.1 4.2e-23 81.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.11 gi|330835338|ref|YP_004410066.1| - 0.00028 20.4 0.0 0.00055 19.5 0.0 1.5 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain Peptidase_C9 PF01707.11 gi|330835338|ref|YP_004410066.1| - 0.13 11.8 0.0 0.29 10.7 0.0 1.5 2 0 0 2 2 2 0 Peptidase family C9 HMGL-like PF00682.14 gi|330835339|ref|YP_004410067.1| - 2.9e-80 269.3 0.5 4e-80 268.9 0.4 1.2 1 0 0 1 1 1 1 HMGL-like Trp_syntA PF00290.15 gi|330835339|ref|YP_004410067.1| - 0.064 11.7 0.0 0.18 10.3 0.0 1.7 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Lactamase_B_3 PF13483.1 gi|330835340|ref|YP_004410068.1| - 4.4e-27 94.7 0.1 5.8e-27 94.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|330835340|ref|YP_004410068.1| - 1.2e-11 44.5 1.7 3e-07 30.1 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain RHH_1 PF01402.16 gi|330835341|ref|YP_004410069.1| - 7.2e-10 38.3 0.7 1.1e-09 37.7 0.3 1.5 1 1 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|330835341|ref|YP_004410069.1| - 0.0041 16.8 0.6 0.0052 16.4 0.4 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain V_ATPase_I PF01496.14 gi|330835342|ref|YP_004410070.1| - 0.53 8.0 2.5 0.53 8.0 1.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AsnC_trans_reg PF01037.16 gi|330835343|ref|YP_004410071.1| - 4.7e-09 35.8 0.1 5.4e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|330835343|ref|YP_004410071.1| - 0.16 12.3 0.9 1.6 9.0 0.1 2.1 1 1 0 2 2 2 0 ACT domain ABC2_membrane_3 PF12698.2 gi|330835344|ref|YP_004410072.1| - 1.3e-14 54.0 32.7 2.1e-14 53.3 22.6 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330835344|ref|YP_004410072.1| - 4.8e-11 42.0 11.1 4.8e-11 42.0 7.7 2.2 1 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330835344|ref|YP_004410072.1| - 7.7e-10 38.3 34.3 1.4e-09 37.4 23.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|330835345|ref|YP_004410073.1| - 4.7e-25 88.4 0.0 6.3e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835345|ref|YP_004410073.1| - 3.3e-12 46.9 0.4 2.2e-05 24.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|330835345|ref|YP_004410073.1| - 0.00018 21.8 0.3 0.00039 20.7 0.2 1.5 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330835345|ref|YP_004410073.1| - 0.0035 16.5 0.1 2 7.6 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|330835345|ref|YP_004410073.1| - 0.0093 14.8 0.1 0.015 14.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF258 PF03193.11 gi|330835345|ref|YP_004410073.1| - 0.019 14.1 0.1 0.033 13.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|330835345|ref|YP_004410073.1| - 0.027 14.0 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|330835345|ref|YP_004410073.1| - 0.031 13.7 0.1 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|330835345|ref|YP_004410073.1| - 0.033 12.6 0.7 1.7 7.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|330835345|ref|YP_004410073.1| - 0.055 14.2 0.7 0.082 13.7 0.5 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|330835345|ref|YP_004410073.1| - 0.083 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain Rad17 PF03215.10 gi|330835345|ref|YP_004410073.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF2204 PF09970.4 gi|330835346|ref|YP_004410074.1| - 0.062 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Pantoate_transf PF02548.10 gi|330835347|ref|YP_004410075.1| - 1e-98 329.6 0.1 1.2e-98 329.4 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|330835347|ref|YP_004410075.1| - 2.9e-07 29.9 0.1 6e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase DUF137 PF02006.11 gi|330835348|ref|YP_004410076.1| - 1.1e-76 256.1 7.0 1.5e-76 255.7 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Iron_permease PF04120.7 gi|330835348|ref|YP_004410076.1| - 0.017 14.7 0.5 0.017 14.7 0.4 2.1 3 0 0 3 3 3 0 Low affinity iron permease TPP_enzyme_M PF00205.17 gi|330835348|ref|YP_004410076.1| - 0.044 13.5 0.3 3.6 7.3 0.1 2.6 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, central domain GHMP_kinases_N PF00288.21 gi|330835349|ref|YP_004410077.1| - 5.8e-05 23.0 0.1 9e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain TSA PF03249.8 gi|330835349|ref|YP_004410077.1| - 0.082 11.4 0.1 0.1 11.1 0.0 1.1 1 0 0 1 1 1 0 Type specific antigen Fer4_8 PF13183.1 gi|330835350|ref|YP_004410078.1| - 1.1e-09 38.1 6.1 2.2e-09 37.2 4.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835350|ref|YP_004410078.1| - 1.7e-08 34.7 2.2 0.006 16.9 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835350|ref|YP_004410078.1| - 1.4e-07 31.7 8.7 2.1e-07 31.2 5.1 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain FAD_binding_4 PF01565.18 gi|330835350|ref|YP_004410078.1| - 2e-06 27.3 0.0 4.3e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|330835350|ref|YP_004410078.1| - 5e-06 26.7 6.2 1.2e-05 25.5 4.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835350|ref|YP_004410078.1| - 8.9e-06 25.8 11.6 0.00012 22.2 7.4 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835350|ref|YP_004410078.1| - 2e-05 24.3 4.8 5e-05 23.0 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835350|ref|YP_004410078.1| - 0.00075 19.2 11.8 0.021 14.6 9.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835350|ref|YP_004410078.1| - 0.00092 18.9 10.7 0.1 12.5 1.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330835350|ref|YP_004410078.1| - 0.00098 19.8 8.5 0.016 15.9 6.3 2.5 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330835350|ref|YP_004410078.1| - 0.0014 18.7 14.7 0.038 14.3 2.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330835350|ref|YP_004410078.1| - 0.0037 16.8 16.3 0.039 13.5 3.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330835350|ref|YP_004410078.1| - 0.25 11.2 14.1 2.5 8.1 2.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330835350|ref|YP_004410078.1| - 0.88 10.2 17.3 0.79 10.4 4.2 2.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|330835350|ref|YP_004410078.1| - 4.5 6.9 7.5 0.7 9.5 0.7 2.4 1 1 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer2_2 PF01799.15 gi|330835351|ref|YP_004410079.1| - 1.4e-36 124.1 1.0 3.1e-36 123.1 0.0 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|330835351|ref|YP_004410079.1| - 1.5e-07 31.0 0.5 1.5e-07 31.0 0.3 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|330835351|ref|YP_004410079.1| - 0.00069 19.4 0.2 0.0011 18.8 0.2 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.16 gi|330835352|ref|YP_004410080.1| - 4e-47 159.8 0.0 5.3e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|330835352|ref|YP_004410080.1| - 2.3e-27 94.9 0.5 3.9e-27 94.1 0.3 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.18 gi|330835352|ref|YP_004410080.1| - 0.023 14.1 0.0 0.044 13.2 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain TP_methylase PF00590.15 gi|330835353|ref|YP_004410081.1| - 5.5e-46 156.9 0.0 6.3e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1404 PF07185.6 gi|330835354|ref|YP_004410082.1| - 0.0002 21.0 13.0 0.00033 20.2 8.6 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1404) DUF350 PF03994.9 gi|330835354|ref|YP_004410082.1| - 2.2 8.0 8.2 0.86 9.3 0.7 3.0 3 0 0 3 3 3 0 Domain of Unknown Function (DUF350) DUF1625 PF07787.7 gi|330835354|ref|YP_004410082.1| - 3.5 6.8 9.4 0.028 13.6 0.7 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1625) SIS PF01380.17 gi|330835356|ref|YP_004410084.1| - 9.4e-07 28.4 0.0 0.015 14.9 0.0 3.1 3 0 0 3 3 3 3 SIS domain Amidohydro_5 PF13594.1 gi|330835357|ref|YP_004410085.1| - 3.8e-06 26.6 0.0 1.1e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|330835357|ref|YP_004410085.1| - 0.0057 16.3 0.0 0.0083 15.8 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family Met_10 PF02475.11 gi|330835358|ref|YP_004410086.1| - 5.1e-45 153.5 0.0 6.1e-45 153.2 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|330835358|ref|YP_004410086.1| - 0.00019 20.8 0.0 0.00033 20.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330835358|ref|YP_004410086.1| - 0.00094 19.1 0.0 0.0022 18.0 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|330835358|ref|YP_004410086.1| - 0.0015 19.0 0.0 0.0028 18.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330835358|ref|YP_004410086.1| - 0.032 13.3 0.0 0.047 12.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|330835358|ref|YP_004410086.1| - 0.075 12.6 0.0 0.099 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain SNURF PF07192.6 gi|330835359|ref|YP_004410087.1| - 0.019 14.8 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 SNURF/RPN4 protein Gln-synt_C PF00120.19 gi|330835360|ref|YP_004410088.1| - 1.6e-53 181.4 0.0 2e-53 181.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|330835360|ref|YP_004410088.1| - 0.061 12.9 0.1 1 8.9 0.1 2.7 1 1 0 1 1 1 0 Glutamine synthetase, beta-Grasp domain ADH_zinc_N PF00107.21 gi|330835361|ref|YP_004410089.1| - 2.4e-18 65.9 0.0 3.5e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|330835361|ref|YP_004410089.1| - 1.1e-10 41.2 2.9 2.7e-10 39.9 0.4 2.4 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|330835361|ref|YP_004410089.1| - 4e-09 37.4 0.0 7.8e-09 36.4 0.0 1.5 2 0 0 2 2 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.13 gi|330835361|ref|YP_004410089.1| - 2.1e-06 27.7 0.1 0.0021 18.0 0.0 2.0 1 1 1 2 2 2 2 TrkA-N domain Shikimate_DH PF01488.15 gi|330835361|ref|YP_004410089.1| - 0.00021 21.3 0.0 0.00033 20.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|330835361|ref|YP_004410089.1| - 0.0018 17.9 0.2 0.0027 17.2 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.1 gi|330835361|ref|YP_004410089.1| - 0.0041 17.3 0.0 0.007 16.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|330835361|ref|YP_004410089.1| - 0.016 15.6 0.1 0.028 14.8 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|330835361|ref|YP_004410089.1| - 0.018 14.6 0.3 0.026 14.1 0.2 1.1 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pyr_redox_3 PF13738.1 gi|330835361|ref|YP_004410089.1| - 0.048 13.7 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|330835361|ref|YP_004410089.1| - 0.052 13.1 0.1 0.076 12.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|330835361|ref|YP_004410089.1| - 0.07 13.1 0.0 0.096 12.6 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding CPSase_L_chain PF00289.17 gi|330835361|ref|YP_004410089.1| - 0.089 12.8 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Oxidored_nitro PF00148.14 gi|330835361|ref|YP_004410089.1| - 0.13 10.8 0.0 0.18 10.3 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase RTC PF01137.16 gi|330835362|ref|YP_004410090.1| - 2e-72 242.6 0.3 2.3e-72 242.5 0.2 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|330835362|ref|YP_004410090.1| - 2e-21 75.9 0.2 3.2e-21 75.2 0.1 1.3 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain IMS PF00817.15 gi|330835364|ref|YP_004410092.1| - 1.1e-40 138.9 0.2 2.1e-40 137.9 0.1 1.5 1 0 0 1 1 1 1 impB/mucB/samB family HHH_5 PF14520.1 gi|330835364|ref|YP_004410092.1| - 2.7e-08 33.8 2.2 5.6e-08 32.8 0.1 2.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|330835364|ref|YP_004410092.1| - 1.2e-07 31.3 0.9 7e-07 28.9 0.0 2.5 2 0 0 2 2 2 1 IMS family HHH motif IMS_C PF11799.3 gi|330835364|ref|YP_004410092.1| - 0.0052 16.7 0.3 0.55 10.1 0.2 2.9 2 1 0 2 2 2 1 impB/mucB/samB family C-terminal domain DNA_pol_lambd_f PF10391.4 gi|330835364|ref|YP_004410092.1| - 0.021 14.3 0.0 0.061 12.8 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda TfoX_C PF04994.8 gi|330835364|ref|YP_004410092.1| - 0.052 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 TfoX C-terminal domain HHH PF00633.18 gi|330835364|ref|YP_004410092.1| - 0.1 12.3 0.3 0.72 9.6 0.1 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif PfkB PF00294.19 gi|330835365|ref|YP_004410093.1| - 7.9e-31 107.3 0.0 6.8e-19 68.1 0.1 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase TIP49 PF06068.8 gi|330835366|ref|YP_004410094.1| - 9.3e-153 508.6 2.5 1.2e-152 508.3 1.7 1.1 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|330835366|ref|YP_004410094.1| - 4.2e-08 33.4 0.8 3.2e-06 27.3 0.1 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|330835366|ref|YP_004410094.1| - 3.2e-07 29.6 1.4 8.9e-05 21.6 0.0 3.1 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|330835366|ref|YP_004410094.1| - 1.8e-06 28.1 0.6 0.0067 16.5 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|330835366|ref|YP_004410094.1| - 3.1e-06 27.2 1.7 0.00017 21.6 0.2 2.6 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|330835366|ref|YP_004410094.1| - 4.1e-05 23.3 0.2 0.012 15.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|330835366|ref|YP_004410094.1| - 0.00015 20.9 0.4 0.00079 18.6 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|330835366|ref|YP_004410094.1| - 0.00037 21.3 0.3 0.0025 18.6 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|330835366|ref|YP_004410094.1| - 0.00055 19.3 0.3 0.0014 18.0 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330835366|ref|YP_004410094.1| - 0.001 18.9 0.0 0.0034 17.2 0.0 1.9 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|330835366|ref|YP_004410094.1| - 0.0011 18.4 0.1 0.0022 17.4 0.1 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|330835366|ref|YP_004410094.1| - 0.0037 16.9 0.1 0.013 15.2 0.1 1.9 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|330835366|ref|YP_004410094.1| - 0.004 16.6 0.2 0.029 13.8 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|330835366|ref|YP_004410094.1| - 0.0062 16.2 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.4 gi|330835366|ref|YP_004410094.1| - 0.0066 15.4 0.1 0.011 14.7 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) UPF0079 PF02367.12 gi|330835366|ref|YP_004410094.1| - 0.0072 15.9 0.1 0.017 14.7 0.1 1.6 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|330835366|ref|YP_004410094.1| - 0.0097 16.2 0.0 0.023 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|330835366|ref|YP_004410094.1| - 0.0098 15.6 1.6 0.11 12.2 0.1 2.5 1 1 0 2 2 2 1 Archaeal ATPase ABC_tran PF00005.22 gi|330835366|ref|YP_004410094.1| - 0.012 15.9 0.4 0.047 13.9 0.1 2.1 1 1 1 2 2 2 0 ABC transporter RNA_helicase PF00910.17 gi|330835366|ref|YP_004410094.1| - 0.023 14.8 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PhoH PF02562.11 gi|330835366|ref|YP_004410094.1| - 0.024 13.8 0.1 0.052 12.7 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein DUF815 PF05673.8 gi|330835366|ref|YP_004410094.1| - 0.037 12.9 0.1 0.076 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|330835366|ref|YP_004410094.1| - 0.049 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_29 PF13555.1 gi|330835366|ref|YP_004410094.1| - 0.076 12.5 0.1 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ResIII PF04851.10 gi|330835366|ref|YP_004410094.1| - 0.08 12.7 0.0 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit TFIID-31kDa PF02291.10 gi|330835366|ref|YP_004410094.1| - 0.13 12.0 0.1 0.48 10.2 0.0 1.9 2 0 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit NUDIX PF00293.23 gi|330835367|ref|YP_004410095.1| - 6e-21 74.5 0.1 8.3e-21 74.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|330835367|ref|YP_004410095.1| - 1.7e-05 24.2 0.0 3.1e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 NUDIX domain Act-Frag_cataly PF09192.5 gi|330835368|ref|YP_004410096.1| - 0.014 14.3 0.0 0.023 13.6 0.0 1.3 1 0 0 1 1 1 0 Actin-fragmin kinase, catalytic MS_channel PF00924.13 gi|330835369|ref|YP_004410097.1| - 8.6e-24 84.0 1.7 1.2e-23 83.4 1.2 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1370 PF07114.6 gi|330835369|ref|YP_004410097.1| - 0.2 10.8 2.2 0.29 10.3 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1370) DUF4311 PF14188.1 gi|330835369|ref|YP_004410097.1| - 0.21 11.0 8.6 0.4 10.1 6.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4311) Rhomboid PF01694.17 gi|330835369|ref|YP_004410097.1| - 0.53 10.2 8.5 0.79 9.7 5.9 1.3 1 0 0 1 1 1 0 Rhomboid family Pyr_redox_2 PF07992.9 gi|330835370|ref|YP_004410098.1| - 7.2e-31 107.6 0.1 1.1e-30 107.0 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|330835370|ref|YP_004410098.1| - 4.2e-14 53.0 0.0 6.5e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835370|ref|YP_004410098.1| - 5.9e-13 49.0 0.5 5.9e-13 49.0 0.3 2.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|330835370|ref|YP_004410098.1| - 2.9e-06 26.4 0.1 0.0018 17.2 0.0 3.0 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.9 gi|330835370|ref|YP_004410098.1| - 4.3e-06 25.4 0.5 0.023 13.1 0.0 3.2 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|330835370|ref|YP_004410098.1| - 1.2e-05 24.4 0.4 0.46 9.2 0.1 3.4 4 0 0 4 4 4 2 FAD binding domain GIDA PF01134.17 gi|330835370|ref|YP_004410098.1| - 4.3e-05 22.5 2.2 1.8 7.3 0.1 4.0 3 1 0 4 4 4 2 Glucose inhibited division protein A FMO-like PF00743.14 gi|330835370|ref|YP_004410098.1| - 0.00022 19.6 0.0 0.00026 19.3 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Thi4 PF01946.12 gi|330835370|ref|YP_004410098.1| - 0.00025 20.2 0.6 0.27 10.3 0.0 2.8 3 0 0 3 3 3 2 Thi4 family DAO PF01266.19 gi|330835370|ref|YP_004410098.1| - 0.00032 19.6 3.1 0.049 12.5 0.3 3.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|330835370|ref|YP_004410098.1| - 0.00046 20.3 0.5 0.023 14.9 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|330835370|ref|YP_004410098.1| - 0.002 17.2 2.0 0.031 13.3 0.0 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|330835370|ref|YP_004410098.1| - 0.0056 16.4 0.2 0.61 9.8 0.0 3.0 3 0 0 3 3 3 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|330835370|ref|YP_004410098.1| - 0.0089 14.9 0.3 11 4.7 0.0 3.0 3 0 0 3 3 3 0 Lycopene cyclase protein Shikimate_DH PF01488.15 gi|330835370|ref|YP_004410098.1| - 0.1 12.7 0.2 0.42 10.6 0.1 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|330835370|ref|YP_004410098.1| - 0.11 11.5 0.1 0.44 9.5 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain AAA PF00004.24 gi|330835371|ref|YP_004410099.1| - 1.4e-82 274.3 0.0 3.3e-40 137.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|330835371|ref|YP_004410099.1| - 5e-15 55.5 1.4 5.6e-07 29.5 0.0 3.6 4 0 0 4 4 3 2 AAA domain AAA_17 PF13207.1 gi|330835371|ref|YP_004410099.1| - 7.8e-15 55.7 0.1 1.5e-06 28.9 0.0 3.1 2 1 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|330835371|ref|YP_004410099.1| - 2.9e-14 53.3 2.9 2.3e-07 30.9 0.0 3.6 5 0 0 5 5 3 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|330835371|ref|YP_004410099.1| - 3.8e-12 45.7 0.1 7.7e-06 25.1 0.0 3.7 5 0 0 5 5 4 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|330835371|ref|YP_004410099.1| - 2.8e-11 43.6 5.2 0.00092 19.3 0.6 4.8 3 2 0 3 3 3 2 AAA domain AAA_5 PF07728.9 gi|330835371|ref|YP_004410099.1| - 5.4e-11 42.3 1.0 0.0011 18.7 0.4 4.1 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|330835371|ref|YP_004410099.1| - 2e-10 40.9 0.1 0.00077 19.4 0.0 3.5 2 2 1 3 3 3 2 AAA ATPase domain AAA_18 PF13238.1 gi|330835371|ref|YP_004410099.1| - 1.1e-08 35.4 0.0 0.00068 19.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|330835371|ref|YP_004410099.1| - 1.6e-08 34.5 0.0 0.0077 16.1 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.1 gi|330835371|ref|YP_004410099.1| - 1.8e-08 34.0 0.9 0.15 11.4 0.1 3.4 2 1 1 3 3 3 3 AAA domain IstB_IS21 PF01695.12 gi|330835371|ref|YP_004410099.1| - 2.6e-08 33.4 0.1 0.0051 16.2 0.0 2.7 2 1 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|330835371|ref|YP_004410099.1| - 3.1e-08 33.7 0.0 0.0056 16.8 0.0 3.3 3 0 0 3 3 2 2 RNA helicase Mg_chelatase PF01078.16 gi|330835371|ref|YP_004410099.1| - 4.4e-07 29.2 1.9 0.002 17.3 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|330835371|ref|YP_004410099.1| - 7.6e-07 28.9 0.4 0.14 11.7 0.0 3.8 2 2 2 4 4 4 2 NACHT domain AAA_3 PF07726.6 gi|330835371|ref|YP_004410099.1| - 1.5e-06 27.8 0.1 0.011 15.2 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|330835371|ref|YP_004410099.1| - 1.7e-06 27.2 0.0 0.0055 15.8 0.0 2.8 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.1 gi|330835371|ref|YP_004410099.1| - 2e-06 27.8 0.0 0.11 12.3 0.0 3.0 4 0 0 4 4 2 2 AAA domain Rad17 PF03215.10 gi|330835371|ref|YP_004410099.1| - 4.2e-06 25.7 0.1 0.028 13.1 0.0 2.7 2 1 1 3 3 3 2 Rad17 cell cycle checkpoint protein AFG1_ATPase PF03969.11 gi|330835371|ref|YP_004410099.1| - 5.9e-06 25.3 0.2 0.0092 14.8 0.0 2.6 1 1 0 2 2 2 2 AFG1-like ATPase TIP49 PF06068.8 gi|330835371|ref|YP_004410099.1| - 1.8e-05 23.6 0.0 0.062 12.0 0.0 2.5 2 0 0 2 2 2 2 TIP49 C-terminus ABC_tran PF00005.22 gi|330835371|ref|YP_004410099.1| - 2e-05 24.8 0.1 0.11 12.7 0.0 3.1 2 1 0 2 2 2 2 ABC transporter Bac_DnaA PF00308.13 gi|330835371|ref|YP_004410099.1| - 5.2e-05 22.9 0.0 0.055 13.0 0.0 2.9 2 2 0 2 2 2 1 Bacterial dnaA protein AAA_19 PF13245.1 gi|330835371|ref|YP_004410099.1| - 5.4e-05 22.8 0.0 0.44 10.3 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Arch_ATPase PF01637.13 gi|330835371|ref|YP_004410099.1| - 6.3e-05 22.7 8.7 0.29 10.7 0.0 5.4 3 2 2 6 6 5 1 Archaeal ATPase AAA_24 PF13479.1 gi|330835371|ref|YP_004410099.1| - 0.00011 21.8 12.5 0.0027 17.3 0.3 4.7 5 1 0 5 5 5 1 AAA domain Vps4_C PF09336.5 gi|330835371|ref|YP_004410099.1| - 0.00014 21.6 0.6 0.02 14.7 0.1 3.2 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain UPF0079 PF02367.12 gi|330835371|ref|YP_004410099.1| - 0.00019 21.0 0.1 0.25 10.9 0.0 2.8 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|330835371|ref|YP_004410099.1| - 0.00058 19.3 0.0 1.6 8.2 0.0 3.0 2 1 0 2 2 2 2 Sigma-54 interaction domain KTI12 PF08433.5 gi|330835371|ref|YP_004410099.1| - 0.0012 18.1 0.9 0.18 11.0 0.1 3.3 3 1 0 3 3 3 1 Chromatin associated protein KTI12 Sigma54_activ_2 PF14532.1 gi|330835371|ref|YP_004410099.1| - 0.0013 18.7 0.0 2.3 8.2 0.0 2.8 2 0 0 2 2 2 1 Sigma-54 interaction domain Guanylate_kin PF00625.16 gi|330835371|ref|YP_004410099.1| - 0.0014 18.0 3.7 0.55 9.6 0.0 4.7 4 3 1 6 6 6 1 Guanylate kinase MMR_HSR1 PF01926.18 gi|330835371|ref|YP_004410099.1| - 0.0024 17.8 0.1 0.89 9.5 0.0 3.6 3 1 0 3 3 3 1 50S ribosome-binding GTPase SKI PF01202.17 gi|330835371|ref|YP_004410099.1| - 0.0024 17.7 0.3 0.42 10.4 0.1 3.1 2 1 0 2 2 2 1 Shikimate kinase PPV_E1_C PF00519.12 gi|330835371|ref|YP_004410099.1| - 0.003 16.2 0.0 0.26 9.8 0.0 2.1 2 0 0 2 2 2 1 Papillomavirus helicase KaiC PF06745.8 gi|330835371|ref|YP_004410099.1| - 0.003 16.7 2.0 2.2 7.3 0.0 3.6 3 1 1 4 4 4 1 KaiC AAA_30 PF13604.1 gi|330835371|ref|YP_004410099.1| - 0.0034 16.9 0.1 2.2 7.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain Parvo_NS1 PF01057.12 gi|330835371|ref|YP_004410099.1| - 0.0035 16.2 0.0 0.25 10.1 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 ResIII PF04851.10 gi|330835371|ref|YP_004410099.1| - 0.0069 16.2 1.6 1.8 8.3 0.0 3.5 2 2 1 3 3 3 1 Type III restriction enzyme, res subunit DUF258 PF03193.11 gi|330835371|ref|YP_004410099.1| - 0.0087 15.2 0.0 1.7 7.8 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|330835371|ref|YP_004410099.1| - 0.0087 15.0 0.0 0.41 9.5 0.0 2.8 3 1 0 3 3 2 1 KAP family P-loop domain ATP-synt_ab PF00006.20 gi|330835371|ref|YP_004410099.1| - 0.0099 15.3 0.0 3.1 7.2 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain PhoH PF02562.11 gi|330835371|ref|YP_004410099.1| - 0.011 14.9 0.1 7.4 5.7 0.0 3.1 4 0 0 4 4 2 0 PhoH-like protein Viral_helicase1 PF01443.13 gi|330835371|ref|YP_004410099.1| - 0.013 15.0 0.0 0.96 8.9 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NB-ARC PF00931.17 gi|330835371|ref|YP_004410099.1| - 0.015 14.1 0.1 1 8.1 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.10 gi|330835371|ref|YP_004410099.1| - 0.02 14.5 0.0 1.4 8.6 0.0 3.1 3 0 0 3 3 2 0 NTPase AAA_10 PF12846.2 gi|330835371|ref|YP_004410099.1| - 0.02 14.3 4.2 5.7 6.2 0.0 3.8 3 2 1 4 4 3 0 AAA-like domain Glutaredoxin PF00462.19 gi|330835371|ref|YP_004410099.1| - 0.039 13.9 0.0 0.49 10.4 0.0 2.8 3 0 0 3 3 2 0 Glutaredoxin PduV-EutP PF10662.4 gi|330835371|ref|YP_004410099.1| - 0.045 13.2 0.1 1.9 7.9 0.0 2.9 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|330835371|ref|YP_004410099.1| - 0.062 12.7 0.2 13 5.1 0.0 2.9 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain OAD_gamma PF04277.8 gi|330835371|ref|YP_004410099.1| - 0.089 13.1 0.1 0.24 11.7 0.1 1.7 1 0 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain SRPRB PF09439.5 gi|330835371|ref|YP_004410099.1| - 0.31 10.2 4.2 5.8 6.0 0.0 4.1 5 0 0 5 5 4 0 Signal recognition particle receptor beta subunit DAO PF01266.19 gi|330835372|ref|YP_004410100.1| - 1.2e-16 60.6 6.5 6.7e-15 54.8 4.5 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|330835372|ref|YP_004410100.1| - 1.4e-11 44.1 1.1 3.3e-09 36.3 0.2 2.9 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|330835372|ref|YP_004410100.1| - 1.9e-10 40.5 0.1 5.2e-10 39.2 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|330835372|ref|YP_004410100.1| - 9.6e-08 31.3 1.5 2.1e-06 27.0 0.3 2.4 2 1 0 2 2 2 1 Thi4 family Pyr_redox PF00070.22 gi|330835372|ref|YP_004410100.1| - 3.1e-07 30.6 3.1 0.005 17.2 0.4 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|330835372|ref|YP_004410100.1| - 5.6e-07 28.9 0.1 3.3e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835372|ref|YP_004410100.1| - 1.5e-06 27.3 5.7 0.00012 21.0 1.0 2.8 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|330835372|ref|YP_004410100.1| - 2.7e-06 27.4 0.1 2e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|330835372|ref|YP_004410100.1| - 3.4e-06 25.7 1.3 0.00092 17.7 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|330835372|ref|YP_004410100.1| - 2.6e-05 23.4 0.7 0.0013 17.8 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|330835372|ref|YP_004410100.1| - 3e-05 24.1 0.2 0.0097 15.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|330835372|ref|YP_004410100.1| - 5.1e-05 22.3 3.0 0.00046 19.1 0.7 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|330835372|ref|YP_004410100.1| - 0.00012 20.9 3.8 0.076 11.6 0.5 2.2 2 0 0 2 2 2 2 Tryptophan halogenase GDI PF00996.13 gi|330835372|ref|YP_004410100.1| - 0.015 13.6 0.1 0.78 7.9 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor UDPG_MGDP_dh_N PF03721.9 gi|330835372|ref|YP_004410100.1| - 0.042 13.2 0.2 0.073 12.4 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GMC_oxred_N PF00732.14 gi|330835372|ref|YP_004410100.1| - 0.082 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|330835372|ref|YP_004410100.1| - 0.14 11.8 0.2 0.24 11.1 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus YjeF_N PF03853.10 gi|330835372|ref|YP_004410100.1| - 0.19 11.3 0.6 1.4 8.4 0.1 2.5 3 0 0 3 3 3 0 YjeF-related protein N-terminus 3HCDH_N PF02737.13 gi|330835372|ref|YP_004410100.1| - 0.37 10.4 1.4 0.77 9.3 0.9 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Phosphodiest PF01663.17 gi|330835373|ref|YP_004410101.1| - 3.8e-15 56.0 0.1 5.5e-14 52.2 0.1 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|330835373|ref|YP_004410101.1| - 0.0031 17.1 0.0 0.6 9.7 0.0 2.4 2 1 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.13 gi|330835373|ref|YP_004410101.1| - 0.043 13.1 0.0 0.37 10.1 0.0 2.0 2 0 0 2 2 2 0 Metalloenzyme superfamily Pribosyltran PF00156.22 gi|330835374|ref|YP_004410102.1| - 2.5e-20 72.4 0.3 3.4e-20 72.0 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|330835374|ref|YP_004410102.1| - 0.012 14.7 0.0 0.015 14.5 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MM_CoA_mutase PF01642.17 gi|330835375|ref|YP_004410103.1| - 1.5e-186 620.5 0.0 1.7e-186 620.3 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Lipocalin_5 PF13924.1 gi|330835375|ref|YP_004410103.1| - 0.048 13.3 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Lipocalin-like domain Glyoxalase_4 PF13669.1 gi|330835376|ref|YP_004410104.1| - 8.8e-23 80.4 0.0 1e-22 80.1 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|330835376|ref|YP_004410104.1| - 2.6e-11 43.6 0.1 2.9e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|330835376|ref|YP_004410104.1| - 5.6e-09 36.1 0.0 7.2e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.2 gi|330835376|ref|YP_004410104.1| - 2.2e-06 28.2 0.0 2.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Osmo_CC PF08946.5 gi|330835376|ref|YP_004410104.1| - 0.055 13.5 0.2 2.4 8.2 0.0 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil HSP20 PF00011.16 gi|330835377|ref|YP_004410105.1| - 5.4e-12 45.4 5.7 7.8e-11 41.7 3.9 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|330835377|ref|YP_004410105.1| - 3.1e-07 30.8 2.3 5.7e-07 29.9 1.6 1.4 1 0 0 1 1 1 1 CS domain PIH1 PF08190.7 gi|330835377|ref|YP_004410105.1| - 0.00031 20.3 0.1 0.00039 19.9 0.1 1.1 1 0 0 1 1 1 1 pre-RNA processing PIH1/Nop17 zf-ZPR1 PF03367.8 gi|330835378|ref|YP_004410106.1| - 3.9e-24 84.6 0.1 5e-22 77.7 0.1 2.1 1 1 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|330835378|ref|YP_004410106.1| - 0.0036 17.5 0.3 0.0084 16.3 0.1 1.7 2 0 0 2 2 2 1 Restriction alleviation protein Lar Desulfoferrod_N PF06397.7 gi|330835378|ref|YP_004410106.1| - 0.0046 16.3 0.1 0.014 14.8 0.1 1.8 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain DUF3797 PF12677.2 gi|330835378|ref|YP_004410106.1| - 0.02 14.4 0.3 0.23 11.0 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) Elf1 PF05129.8 gi|330835378|ref|YP_004410106.1| - 0.052 13.2 0.5 0.11 12.2 0.4 1.6 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Rubredoxin PF00301.15 gi|330835378|ref|YP_004410106.1| - 0.069 13.0 2.2 6.2 6.7 0.3 2.6 2 0 0 2 2 2 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|330835378|ref|YP_004410106.1| - 0.075 12.7 0.9 0.26 11.0 0.0 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|330835378|ref|YP_004410106.1| - 0.098 12.4 0.1 0.098 12.4 0.1 1.8 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DUF3268 PF11672.3 gi|330835378|ref|YP_004410106.1| - 0.1 12.6 0.7 0.19 11.7 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) TF_Zn_Ribbon PF08271.7 gi|330835378|ref|YP_004410106.1| - 0.29 10.4 0.1 0.29 10.4 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding NOB1_Zn_bind PF08772.6 gi|330835378|ref|YP_004410106.1| - 0.7 9.7 0.1 0.7 9.7 0.1 2.3 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like GTP_EFTU PF00009.22 gi|330835379|ref|YP_004410107.1| - 1.1e-25 90.1 0.0 2.1e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|330835379|ref|YP_004410107.1| - 1.2e-13 51.0 0.1 2.5e-13 50.0 0.1 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|330835379|ref|YP_004410107.1| - 5.9e-07 29.5 0.4 3e-06 27.2 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|330835379|ref|YP_004410107.1| - 0.00021 20.7 0.9 0.36 10.3 0.0 3.4 2 1 1 3 3 3 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|330835379|ref|YP_004410107.1| - 0.00074 19.4 0.0 0.0018 18.2 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase COXG PF06240.8 gi|330835380|ref|YP_004410108.1| - 1.1e-10 41.3 0.0 1.3e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) COXG PF06240.8 gi|330835381|ref|YP_004410109.1| - 8.9e-40 135.5 0.3 9.9e-40 135.4 0.2 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.3 gi|330835381|ref|YP_004410109.1| - 3.6e-05 23.8 0.0 7.1e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) Polyketide_cyc2 PF10604.4 gi|330835381|ref|YP_004410109.1| - 0.00081 19.5 0.0 0.00089 19.4 0.0 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport UQ_con PF00179.21 gi|330835381|ref|YP_004410109.1| - 0.02 14.3 0.0 0.041 13.3 0.0 1.4 1 1 0 1 1 1 0 Ubiquitin-conjugating enzyme MoaE PF02391.12 gi|330835382|ref|YP_004410110.1| - 6.4e-19 67.8 0.1 1.1e-18 67.1 0.1 1.4 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|330835382|ref|YP_004410110.1| - 1e-10 41.9 0.1 2.6e-10 40.5 0.0 1.8 1 0 0 1 1 1 1 ThiS family DUF2577 PF10844.3 gi|330835382|ref|YP_004410110.1| - 0.053 13.5 0.3 5.7 7.0 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2577) Phos_pyr_kin PF08543.7 gi|330835383|ref|YP_004410111.1| - 7.9e-71 238.1 0.9 1e-70 237.7 0.6 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|330835383|ref|YP_004410111.1| - 3.1e-53 179.6 0.0 9.9e-53 177.9 0.0 1.8 2 0 0 2 2 2 1 Putative aldolase PfkB PF00294.19 gi|330835383|ref|YP_004410111.1| - 3.4e-07 29.6 0.0 5e-07 29.1 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|330835383|ref|YP_004410111.1| - 1.9e-05 24.0 1.0 2.9e-05 23.4 0.7 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HD_3 PF13023.1 gi|330835384|ref|YP_004410112.1| - 7.2e-16 58.3 0.0 3.4e-15 56.1 0.0 1.8 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|330835384|ref|YP_004410112.1| - 9e-07 28.9 0.2 2.2e-06 27.6 0.1 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|330835384|ref|YP_004410112.1| - 0.00014 21.2 0.0 0.00021 20.6 0.0 1.2 1 0 0 1 1 1 1 HDOD domain HD_2 PF12917.2 gi|330835384|ref|YP_004410112.1| - 0.0069 16.1 0.2 0.012 15.3 0.1 1.5 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme Thioesterase PF00975.15 gi|330835384|ref|YP_004410112.1| - 0.055 13.6 0.0 0.65 10.1 0.0 2.0 2 0 0 2 2 2 0 Thioesterase domain DUF2802 PF10975.3 gi|330835384|ref|YP_004410112.1| - 0.059 13.1 0.1 0.59 9.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Pyrophosphatase PF00719.14 gi|330835385|ref|YP_004410113.1| - 2.9e-61 205.5 0.3 3.2e-61 205.3 0.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase Glyco_tranf_2_3 PF13641.1 gi|330835386|ref|YP_004410114.1| - 7.4e-34 117.5 0.0 1e-33 117.0 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|330835386|ref|YP_004410114.1| - 3.6e-27 95.3 0.4 3.6e-27 95.3 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|330835386|ref|YP_004410114.1| - 2.5e-18 66.3 0.1 3.6e-18 65.8 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|330835386|ref|YP_004410114.1| - 1.1e-17 63.8 0.1 4.2e-17 61.9 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|330835386|ref|YP_004410114.1| - 3.2e-07 29.6 0.0 6.8e-07 28.6 0.0 1.5 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.9 gi|330835386|ref|YP_004410114.1| - 6.8e-05 21.3 0.2 9.9e-05 20.8 0.1 1.1 1 0 0 1 1 1 1 Cellulose synthase DUF4131 PF13567.1 gi|330835386|ref|YP_004410114.1| - 4.6 6.6 13.3 0.059 12.7 2.4 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) T2SE PF00437.15 gi|330835387|ref|YP_004410115.1| - 2.5e-44 151.2 0.0 4e-44 150.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|330835387|ref|YP_004410115.1| - 0.0061 16.4 0.0 0.32 10.8 0.0 2.6 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|330835387|ref|YP_004410115.1| - 0.019 14.4 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|330835387|ref|YP_004410115.1| - 0.021 14.5 0.1 0.042 13.5 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|330835387|ref|YP_004410115.1| - 0.024 14.1 0.1 0.05 13.0 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|330835387|ref|YP_004410115.1| - 0.025 14.1 0.1 0.36 10.3 0.1 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF87 PF01935.12 gi|330835387|ref|YP_004410115.1| - 0.026 14.3 0.1 0.07 12.9 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function DUF87 Viral_helicase1 PF01443.13 gi|330835387|ref|YP_004410115.1| - 0.086 12.3 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Miro PF08477.8 gi|330835387|ref|YP_004410115.1| - 0.093 13.2 0.4 1.1 9.7 0.1 2.7 2 1 1 3 3 3 0 Miro-like protein AAA_30 PF13604.1 gi|330835387|ref|YP_004410115.1| - 0.1 12.1 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|330835387|ref|YP_004410115.1| - 0.11 12.7 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter AAA_17 PF13207.1 gi|330835387|ref|YP_004410115.1| - 0.13 13.0 0.2 0.46 11.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SF PF00482.18 gi|330835388|ref|YP_004410116.1| - 7.7e-14 51.6 2.2 6.3e-08 32.5 0.1 4.8 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F TAF PF02969.12 gi|330835388|ref|YP_004410116.1| - 0.016 15.1 0.1 0.033 14.1 0.1 1.5 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) TSCPD PF12637.2 gi|330835388|ref|YP_004410116.1| - 0.093 12.6 0.0 16 5.5 0.0 2.7 2 0 0 2 2 2 0 TSCPD domain PadR PF03551.9 gi|330835389|ref|YP_004410117.1| - 2.2e-14 52.9 0.0 3.4e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|330835389|ref|YP_004410117.1| - 0.0082 15.8 0.3 0.019 14.6 0.2 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Stork_head PF10264.4 gi|330835389|ref|YP_004410117.1| - 0.01 15.9 0.0 0.016 15.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix Storkhead-box1 domain DUF1495 PF07381.6 gi|330835389|ref|YP_004410117.1| - 0.01 15.4 0.1 0.032 13.9 0.0 1.8 2 1 1 3 3 3 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.1 gi|330835389|ref|YP_004410117.1| - 0.023 14.2 0.1 0.04 13.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF3873 PF12989.2 gi|330835389|ref|YP_004410117.1| - 0.089 12.9 0.2 1.2 9.3 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3873) HTH_34 PF13601.1 gi|330835389|ref|YP_004410117.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|330835389|ref|YP_004410117.1| - 0.12 12.2 0.0 0.3 10.9 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|330835389|ref|YP_004410117.1| - 0.15 12.4 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Aldolase_2 PF10120.4 gi|330835390|ref|YP_004410118.1| - 5.5e-54 182.0 0.0 7.2e-54 181.7 0.0 1.1 1 0 0 1 1 1 1 Putative aldolase DUF1634 PF07843.6 gi|330835391|ref|YP_004410119.1| - 1.1e-27 95.7 12.8 1.3e-27 95.5 8.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) SdpI PF13630.1 gi|330835391|ref|YP_004410119.1| - 0.48 10.1 14.1 0.26 10.9 3.6 2.3 2 0 0 2 2 2 0 SdpI/YhfL protein family Peptidase_M50 PF02163.17 gi|330835391|ref|YP_004410119.1| - 1.4 7.8 3.8 2 7.3 2.6 1.2 1 0 0 1 1 1 0 Peptidase family M50 DoxD PF04173.8 gi|330835391|ref|YP_004410119.1| - 2.7 7.6 8.6 0.34 10.5 2.7 1.7 1 1 2 3 3 3 0 TQO small subunit DoxD DUF4097 PF13349.1 gi|330835391|ref|YP_004410119.1| - 8.9 5.8 9.8 0.13 11.8 0.5 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4097) TauE PF01925.14 gi|330835392|ref|YP_004410120.1| - 1.1e-34 120.0 23.0 1.2e-34 119.8 16.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4131 PF13567.1 gi|330835392|ref|YP_004410120.1| - 6.1 6.2 12.0 0.78 9.1 1.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Antitoxin-MazE PF04014.13 gi|330835395|ref|YP_004410123.1| - 1.2e-08 34.5 0.5 5e-07 29.3 0.1 2.4 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Glu-tRNAGln PF02686.10 gi|330835395|ref|YP_004410123.1| - 0.14 11.9 1.8 1.1 9.0 0.1 3.0 3 1 0 3 3 3 0 Glu-tRNAGln amidotransferase C subunit FAD_binding_4 PF01565.18 gi|330835396|ref|YP_004410124.1| - 4.7e-25 87.6 0.0 8.4e-25 86.8 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain AIRS_C PF02769.17 gi|330835396|ref|YP_004410124.1| - 0.12 12.4 0.1 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 AIR synthase related protein, C-terminal domain FAD-oxidase_C PF02913.14 gi|330835397|ref|YP_004410125.1| - 1.4e-55 188.3 0.0 1.8e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|330835397|ref|YP_004410125.1| - 2.7e-31 107.9 0.0 4.5e-31 107.1 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|330835398|ref|YP_004410126.1| - 6.7e-18 64.4 0.1 2.2e-08 34.0 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|330835398|ref|YP_004410126.1| - 5.1e-11 42.4 4.9 1.3e-10 41.1 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835398|ref|YP_004410126.1| - 3e-10 40.3 7.1 3e-10 40.3 4.9 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330835398|ref|YP_004410126.1| - 9.1e-10 38.7 4.9 2.2e-09 37.5 3.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835398|ref|YP_004410126.1| - 1.8e-07 30.4 12.1 0.0003 20.2 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330835398|ref|YP_004410126.1| - 3.1e-07 30.0 7.5 3.7e-06 26.6 6.1 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835398|ref|YP_004410126.1| - 2.2e-05 24.0 12.5 0.0016 18.2 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|330835398|ref|YP_004410126.1| - 2.9e-05 23.7 13.6 0.005 16.6 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330835398|ref|YP_004410126.1| - 6e-05 23.3 8.0 0.072 13.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330835398|ref|YP_004410126.1| - 0.00014 21.8 13.0 0.047 14.0 1.9 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330835398|ref|YP_004410126.1| - 0.00014 22.4 3.1 0.24 12.1 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|330835398|ref|YP_004410126.1| - 0.00024 21.3 11.6 0.14 12.4 1.6 2.5 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835398|ref|YP_004410126.1| - 0.0084 15.9 11.1 0.046 13.5 7.7 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835398|ref|YP_004410126.1| - 0.045 14.3 5.9 3.4 8.3 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330835398|ref|YP_004410126.1| - 0.1 13.2 20.5 0.41 11.3 3.1 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330835398|ref|YP_004410126.1| - 0.11 12.8 5.4 3.5 8.0 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain CbiA PF01656.18 gi|330835400|ref|YP_004410128.1| - 5.8e-28 97.6 0.0 6.7e-28 97.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330835400|ref|YP_004410128.1| - 2.9e-11 43.5 0.0 1.3e-06 28.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|330835400|ref|YP_004410128.1| - 4.7e-11 42.2 0.0 6.2e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|330835400|ref|YP_004410128.1| - 9.5e-07 28.1 0.1 0.0018 17.3 0.0 2.2 2 0 0 2 2 2 2 Anion-transporting ATPase ParA PF10609.4 gi|330835400|ref|YP_004410128.1| - 0.0013 18.5 0.1 0.0023 17.7 0.1 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_24 PF13479.1 gi|330835400|ref|YP_004410128.1| - 0.019 14.5 0.2 0.12 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|330835400|ref|YP_004410128.1| - 0.064 12.2 0.9 0.19 10.7 0.1 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Fer4_NifH PF00142.13 gi|330835400|ref|YP_004410128.1| - 0.15 11.2 0.4 0.27 10.3 0.1 1.5 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|330835400|ref|YP_004410128.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein DUF3552 PF12072.3 gi|330835401|ref|YP_004410129.1| - 0.0017 17.6 0.2 1.4 8.1 0.0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) Herpes_LMP1 PF05297.6 gi|330835401|ref|YP_004410129.1| - 0.0043 16.0 31.2 1.4 7.7 12.3 2.5 1 1 1 2 2 2 2 Herpesvirus latent membrane protein 1 (LMP1) DUF869 PF05911.6 gi|330835401|ref|YP_004410129.1| - 0.011 13.9 0.0 0.014 13.6 0.0 1.1 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Fib_alpha PF08702.5 gi|330835401|ref|YP_004410129.1| - 0.021 14.9 3.9 4.8 7.2 0.3 2.9 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family MCPsignal PF00015.16 gi|330835401|ref|YP_004410129.1| - 0.087 12.3 0.7 8.6 5.8 0.1 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Transposase_22 PF02994.9 gi|330835401|ref|YP_004410129.1| - 0.1 11.0 9.4 0.26 9.7 3.6 2.2 1 1 1 2 2 2 0 L1 transposable element DUF4322 PF14210.1 gi|330835401|ref|YP_004410129.1| - 0.3 10.5 12.5 58 3.2 0.1 5.8 1 1 8 9 9 9 0 Domain of unknown function (DUF4322) DUF2981 PF11200.3 gi|330835401|ref|YP_004410129.1| - 1.2 8.1 16.7 4.4e+03 -3.6 11.6 3.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2981) Cerato-platanin PF07249.7 gi|330835401|ref|YP_004410129.1| - 1.6 8.7 5.5 99 2.9 0.1 3.3 1 1 3 4 4 4 0 Cerato-platanin Pyr_redox_2 PF07992.9 gi|330835402|ref|YP_004410130.1| - 3.8e-14 53.0 0.0 6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835402|ref|YP_004410130.1| - 8.1e-06 26.1 2.0 0.00061 20.1 0.5 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|330835402|ref|YP_004410130.1| - 1.4e-05 24.3 0.3 0.0013 17.8 0.4 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|330835402|ref|YP_004410130.1| - 0.00015 20.7 0.1 0.0002 20.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|330835402|ref|YP_004410130.1| - 0.0007 19.5 0.2 0.0016 18.3 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|330835402|ref|YP_004410130.1| - 0.0073 15.2 0.9 0.013 14.4 0.6 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330835402|ref|YP_004410130.1| - 0.0089 14.5 0.4 0.016 13.6 0.3 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|330835402|ref|YP_004410130.1| - 0.016 14.2 0.8 0.037 13.1 0.2 1.7 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.17 gi|330835402|ref|YP_004410130.1| - 0.021 13.6 0.1 0.033 13.0 0.0 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|330835402|ref|YP_004410130.1| - 0.022 14.9 0.2 0.055 13.7 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|330835402|ref|YP_004410130.1| - 0.03 13.3 0.8 0.043 12.9 0.5 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|330835402|ref|YP_004410130.1| - 0.075 11.6 1.7 0.27 9.8 0.7 1.9 1 1 1 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.19 gi|330835402|ref|YP_004410130.1| - 0.098 11.7 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DUF1614 PF07758.6 gi|330835404|ref|YP_004410132.1| - 1.4e-45 155.2 11.3 1.4e-45 155.2 7.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF3211 PF11485.3 gi|330835406|ref|YP_004410134.1| - 1.2e-25 90.1 0.0 1.3e-25 90.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) QueC PF06508.8 gi|330835407|ref|YP_004410135.1| - 1.5e-58 197.5 0.0 2.2e-58 197.0 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.1 gi|330835407|ref|YP_004410135.1| - 4.1e-13 49.1 0.0 8e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|330835407|ref|YP_004410135.1| - 6.4e-11 42.3 0.0 1.2e-10 41.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.9 gi|330835407|ref|YP_004410135.1| - 1.3e-09 37.8 0.1 5.6e-09 35.7 0.0 2.0 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|330835407|ref|YP_004410135.1| - 0.00019 20.1 0.0 0.00042 18.9 0.0 1.5 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|330835407|ref|YP_004410135.1| - 0.00021 20.8 0.0 0.00043 19.8 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ATP_bind_3 PF01171.15 gi|330835407|ref|YP_004410135.1| - 0.011 15.3 0.0 0.018 14.5 0.0 1.3 1 0 0 1 1 1 0 PP-loop family DEAD PF00270.24 gi|330835408|ref|YP_004410136.1| - 1.8e-24 86.1 0.0 1.3e-23 83.3 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|330835408|ref|YP_004410136.1| - 2.7e-16 59.1 0.0 1.7e-14 53.3 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DUF1998 PF09369.5 gi|330835408|ref|YP_004410136.1| - 3.4e-13 49.9 0.3 1e-12 48.4 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) SecA_DEAD PF07517.9 gi|330835408|ref|YP_004410136.1| - 0.00061 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain ResIII PF04851.10 gi|330835408|ref|YP_004410136.1| - 0.0011 18.8 0.0 0.0034 17.2 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|330835408|ref|YP_004410136.1| - 0.08 12.7 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain Fer4_8 PF13183.1 gi|330835410|ref|YP_004410138.1| - 3.7e-09 36.4 3.7 9.3e-09 35.1 2.6 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835410|ref|YP_004410138.1| - 8e-08 32.5 6.2 1.9e-07 31.3 4.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835410|ref|YP_004410138.1| - 2.7e-07 30.2 8.9 1.8e-06 27.6 6.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835410|ref|YP_004410138.1| - 7.7e-07 28.4 18.0 0.00042 19.8 1.9 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|330835410|ref|YP_004410138.1| - 1.2e-06 28.1 13.5 0.002 17.9 1.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835410|ref|YP_004410138.1| - 1.8e-05 24.9 13.1 3.5e-05 23.9 7.4 2.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|330835410|ref|YP_004410138.1| - 2.2e-05 24.7 8.0 0.00011 22.5 5.8 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835410|ref|YP_004410138.1| - 3.3e-05 23.5 10.3 0.0029 17.4 0.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330835410|ref|YP_004410138.1| - 6.1e-05 23.3 9.5 0.04 14.3 1.0 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835410|ref|YP_004410138.1| - 6.7e-05 23.3 2.9 0.033 14.7 0.3 2.5 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|330835410|ref|YP_004410138.1| - 0.00021 21.3 11.7 0.013 15.7 0.8 2.7 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330835410|ref|YP_004410138.1| - 0.00043 20.6 20.2 0.022 15.2 3.6 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|330835410|ref|YP_004410138.1| - 0.0047 17.2 5.6 0.11 12.8 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|330835410|ref|YP_004410138.1| - 0.0054 16.5 9.1 0.017 14.9 6.3 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835410|ref|YP_004410138.1| - 0.012 16.3 12.3 0.31 11.8 8.7 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain MoCF_biosynth PF00994.19 gi|330835411|ref|YP_004410139.1| - 4.4e-28 97.5 0.1 5.2e-28 97.2 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain DAO PF01266.19 gi|330835414|ref|YP_004410142.1| - 1.3e-14 53.8 0.5 1.8e-08 33.7 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|330835414|ref|YP_004410142.1| - 5.6e-05 23.1 0.0 8.1e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835414|ref|YP_004410142.1| - 0.0041 17.4 0.1 0.013 15.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|330835414|ref|YP_004410142.1| - 0.0096 15.9 0.1 0.024 14.6 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_8 PF13450.1 gi|330835414|ref|YP_004410142.1| - 0.018 15.0 0.1 0.036 14.0 0.1 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|330835414|ref|YP_004410142.1| - 0.048 13.1 0.0 0.073 12.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|330835414|ref|YP_004410142.1| - 0.067 12.5 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|330835414|ref|YP_004410142.1| - 0.15 12.3 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.12 gi|330835414|ref|YP_004410142.1| - 0.15 12.4 0.1 1 9.8 0.0 2.3 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent DUF3211 PF11485.3 gi|330835416|ref|YP_004410144.1| - 6.5e-25 87.7 0.3 7e-25 87.6 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) Pro-MCH PF05824.7 gi|330835418|ref|YP_004410146.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Pro-melanin-concentrating hormone (Pro-MCH) GNAT_acetyltran PF12746.2 gi|330835418|ref|YP_004410146.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase DUF4143 PF13635.1 gi|330835419|ref|YP_004410147.1| - 0.002 18.2 0.0 0.0026 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) McrBC PF10117.4 gi|330835419|ref|YP_004410147.1| - 0.0081 15.1 1.0 0.015 14.2 0.1 1.8 1 1 1 2 2 2 1 McrBC 5-methylcytosine restriction system component TPD PF14811.1 gi|330835419|ref|YP_004410147.1| - 0.18 11.3 0.5 3.9 6.9 0.4 2.3 1 1 0 1 1 1 0 Protein of unknown function TPD sequence-motif ATP-grasp PF02222.17 gi|330835420|ref|YP_004410148.1| - 6.7e-42 142.7 0.0 1.1e-41 142.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330835420|ref|YP_004410148.1| - 1e-20 74.2 0.0 1.7e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330835420|ref|YP_004410148.1| - 3.3e-09 36.3 0.0 5.7e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|330835420|ref|YP_004410148.1| - 2.4e-08 33.6 0.0 4.8e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|330835420|ref|YP_004410148.1| - 5.2e-07 29.6 0.0 8.7e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_chain PF00289.17 gi|330835420|ref|YP_004410148.1| - 5e-05 23.3 0.1 0.00015 21.8 0.1 1.9 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain GARS_A PF01071.14 gi|330835420|ref|YP_004410148.1| - 6e-05 22.6 0.1 0.00025 20.6 0.0 2.0 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|330835420|ref|YP_004410148.1| - 6.9e-05 22.4 0.0 0.00069 19.1 0.0 2.1 1 1 0 1 1 1 1 RimK-like ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|330835420|ref|YP_004410148.1| - 0.018 14.1 0.0 0.033 13.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|330835420|ref|YP_004410148.1| - 0.018 14.6 0.1 0.03 13.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.1 gi|330835420|ref|YP_004410148.1| - 0.063 12.4 0.0 0.24 10.6 0.0 2.0 2 0 0 2 2 2 0 ATP-grasp domain Hist_deacetyl PF00850.14 gi|330835421|ref|YP_004410149.1| - 1.7e-73 247.6 0.0 2.1e-73 247.3 0.0 1.1 1 0 0 1 1 1 1 Histone deacetylase domain CBS PF00571.23 gi|330835422|ref|YP_004410150.1| - 1.9e-51 171.5 2.3 6.3e-13 48.2 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|330835422|ref|YP_004410150.1| - 9.7e-09 35.5 0.8 9.7e-09 35.5 0.6 1.9 2 0 0 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein H_kinase_N PF12282.3 gi|330835422|ref|YP_004410150.1| - 0.0055 16.3 0.3 2.5 7.6 0.0 3.3 3 0 0 3 3 3 1 Signal transduction histidine kinase CN_hydrolase PF00795.17 gi|330835423|ref|YP_004410151.1| - 2.6e-12 46.4 0.0 1.1e-11 44.4 0.0 1.9 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase URO-D PF01208.12 gi|330835423|ref|YP_004410151.1| - 0.056 12.3 0.0 0.081 11.8 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) OKR_DC_1_C PF03711.10 gi|330835423|ref|YP_004410151.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, C-terminal domain Ald_Xan_dh_C2 PF02738.13 gi|330835426|ref|YP_004410154.1| - 8.6e-102 341.2 0.0 1.2e-101 340.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330835426|ref|YP_004410154.1| - 3e-20 72.3 0.0 4.8e-20 71.6 0.0 1.3 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PaREP1 PF05942.6 gi|330835427|ref|YP_004410155.1| - 5.8e-08 32.6 0.1 9.3e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family POR_N PF01855.14 gi|330835428|ref|YP_004410156.1| - 4.5e-60 203.0 0.0 6.7e-60 202.4 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|330835428|ref|YP_004410156.1| - 6.9e-32 110.7 0.6 1.6e-31 109.5 0.4 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|330835428|ref|YP_004410156.1| - 2.5e-07 30.6 0.0 9.7e-07 28.7 0.0 2.0 2 0 0 2 2 2 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|330835428|ref|YP_004410156.1| - 5.6e-05 22.6 0.1 0.00014 21.4 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DUF2164 PF09932.4 gi|330835428|ref|YP_004410156.1| - 0.0004 20.1 0.1 0.0031 17.2 0.0 2.3 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2164) TPP_enzyme_C PF02775.16 gi|330835429|ref|YP_004410157.1| - 3.5e-29 101.3 0.0 5.1e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|330835429|ref|YP_004410157.1| - 4.4e-13 48.9 0.5 3.5e-12 46.0 0.4 2.1 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal VIT1 PF01988.14 gi|330835431|ref|YP_004410159.1| - 5.9e-33 114.1 11.0 7.1e-19 68.1 0.1 2.3 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.12 gi|330835431|ref|YP_004410159.1| - 2.8e-09 37.4 0.4 5e-09 36.5 0.3 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2397 PF09660.5 gi|330835431|ref|YP_004410159.1| - 0.0022 16.6 0.1 0.004 15.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2397) Ferritin_2 PF13668.1 gi|330835431|ref|YP_004410159.1| - 0.004 17.0 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 2 Ferritin-like domain COQ7 PF03232.8 gi|330835431|ref|YP_004410159.1| - 0.0084 15.6 0.1 0.038 13.4 0.1 2.1 2 1 0 2 2 2 1 Ubiquinone biosynthesis protein COQ7 ABC_tran PF00005.22 gi|330835432|ref|YP_004410160.1| - 3.4e-28 98.6 0.0 7e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835432|ref|YP_004410160.1| - 2.1e-13 50.8 1.3 1.6e-05 25.0 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|330835432|ref|YP_004410160.1| - 5.1e-07 29.0 2.8 0.016 14.2 0.0 2.7 2 1 1 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|330835432|ref|YP_004410160.1| - 1.4e-05 25.5 3.2 3e-05 24.4 2.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|330835432|ref|YP_004410160.1| - 7.2e-05 22.3 0.1 0.33 10.3 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain AAA_29 PF13555.1 gi|330835432|ref|YP_004410160.1| - 9.1e-05 21.9 0.1 0.00017 21.0 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|330835432|ref|YP_004410160.1| - 0.00082 17.9 0.0 0.0012 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|330835432|ref|YP_004410160.1| - 0.00094 19.3 0.4 0.0062 16.6 0.1 2.4 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|330835432|ref|YP_004410160.1| - 0.0048 16.8 0.2 0.016 15.1 0.2 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|330835432|ref|YP_004410160.1| - 0.01 15.4 0.0 0.033 13.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|330835432|ref|YP_004410160.1| - 0.013 15.1 2.2 0.088 12.3 0.1 2.5 3 0 0 3 3 3 0 AAA domain SMC_N PF02463.14 gi|330835432|ref|YP_004410160.1| - 0.022 13.9 0.1 0.043 13.0 0.1 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|330835432|ref|YP_004410160.1| - 0.025 14.3 0.2 0.053 13.2 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|330835432|ref|YP_004410160.1| - 0.028 13.6 0.0 0.055 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|330835432|ref|YP_004410160.1| - 0.039 13.9 0.0 0.076 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|330835432|ref|YP_004410160.1| - 0.041 13.5 3.1 0.073 12.7 0.3 2.5 1 1 1 2 2 2 0 Archaeal ATPase cobW PF02492.14 gi|330835432|ref|YP_004410160.1| - 0.043 13.2 0.0 0.09 12.2 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|330835432|ref|YP_004410160.1| - 0.045 13.9 1.1 0.22 11.7 0.3 2.6 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|330835432|ref|YP_004410160.1| - 0.047 13.4 0.2 0.15 11.7 0.0 2.0 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.16 gi|330835432|ref|YP_004410160.1| - 0.062 12.4 0.0 0.11 11.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|330835432|ref|YP_004410160.1| - 0.08 12.5 0.0 0.28 10.8 0.0 1.9 2 0 0 2 2 2 0 NACHT domain MutS_V PF00488.16 gi|330835432|ref|YP_004410160.1| - 0.099 12.0 0.1 0.21 10.9 0.1 1.5 1 0 0 1 1 1 0 MutS domain V Zot PF05707.7 gi|330835432|ref|YP_004410160.1| - 0.11 11.9 0.5 1.8 7.9 0.1 2.3 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) NTPase_1 PF03266.10 gi|330835432|ref|YP_004410160.1| - 0.16 11.6 2.2 3.5 7.2 0.1 2.9 3 0 0 3 3 3 0 NTPase ABC2_membrane_2 PF12679.2 gi|330835433|ref|YP_004410161.1| - 8.4e-12 44.5 25.1 1e-11 44.2 17.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330835433|ref|YP_004410161.1| - 4.3e-08 32.6 28.1 9.9e-08 31.4 19.6 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|330835433|ref|YP_004410161.1| - 1.7e-05 24.0 25.5 2.3e-05 23.5 17.7 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein CbiA PF01656.18 gi|330835434|ref|YP_004410162.1| - 5e-11 42.3 0.7 2e-10 40.4 0.5 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330835434|ref|YP_004410162.1| - 7.5e-08 32.4 0.2 2.9e-07 30.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|330835434|ref|YP_004410162.1| - 1.4e-06 27.6 1.1 2.4e-06 26.8 0.3 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|330835434|ref|YP_004410162.1| - 0.00022 20.3 0.5 0.00069 18.7 0.1 1.8 2 0 0 2 2 2 1 ATPase MipZ AAA_17 PF13207.1 gi|330835434|ref|YP_004410162.1| - 0.0069 17.1 0.6 0.02 15.6 0.4 1.9 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|330835434|ref|YP_004410162.1| - 0.012 15.0 0.2 0.025 14.0 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein YhjQ PF06564.7 gi|330835434|ref|YP_004410162.1| - 0.014 14.7 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein Fer4_NifH PF00142.13 gi|330835434|ref|YP_004410162.1| - 0.02 14.1 0.1 0.03 13.5 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Prophage_tail PF06605.6 gi|330835434|ref|YP_004410162.1| - 0.02 13.8 0.0 0.042 12.7 0.0 1.5 2 0 0 2 2 2 0 Prophage endopeptidase tail AAA_25 PF13481.1 gi|330835434|ref|YP_004410162.1| - 0.03 13.7 0.1 0.068 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.15 gi|330835434|ref|YP_004410162.1| - 0.031 13.9 0.1 0.055 13.1 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.12 gi|330835434|ref|YP_004410162.1| - 0.038 13.8 1.0 0.094 12.5 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|330835434|ref|YP_004410162.1| - 0.055 13.7 1.2 0.15 12.3 0.5 1.9 2 1 0 2 2 1 0 AAA domain Ldh_1_N PF00056.18 gi|330835434|ref|YP_004410162.1| - 0.057 13.2 0.1 0.092 12.5 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain MobB PF03205.9 gi|330835434|ref|YP_004410162.1| - 0.073 12.7 0.1 0.13 11.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|330835434|ref|YP_004410162.1| - 0.098 12.0 0.2 0.23 10.8 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain KTI12 PF08433.5 gi|330835434|ref|YP_004410162.1| - 0.12 11.5 0.3 0.34 10.0 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 SRP54 PF00448.17 gi|330835434|ref|YP_004410162.1| - 0.12 11.7 0.1 1.1 8.6 0.1 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AurF PF11583.3 gi|330835435|ref|YP_004410163.1| - 1.1e-06 27.7 0.0 1.4e-05 24.1 0.0 2.3 1 1 0 1 1 1 1 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.12 gi|330835435|ref|YP_004410163.1| - 0.0017 18.7 0.0 0.0073 16.6 0.0 2.0 2 0 0 2 2 2 1 Rubrerythrin PI3K_p85B PF02192.11 gi|330835435|ref|YP_004410163.1| - 0.095 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain CbiA PF01656.18 gi|330835436|ref|YP_004410164.1| - 3.1e-10 39.7 0.0 8.5e-10 38.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330835436|ref|YP_004410164.1| - 9.9e-07 28.8 0.1 1.7e-06 28.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|330835436|ref|YP_004410164.1| - 0.00025 20.2 0.0 0.00089 18.3 0.0 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_18 PF13238.1 gi|330835436|ref|YP_004410164.1| - 0.026 14.8 0.4 0.12 12.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|330835436|ref|YP_004410164.1| - 0.059 13.5 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ParA PF10609.4 gi|330835436|ref|YP_004410164.1| - 0.12 12.2 0.3 0.26 11.1 0.2 1.6 1 1 0 1 1 1 0 ParA/MinD ATPase like AAA_17 PF13207.1 gi|330835436|ref|YP_004410164.1| - 0.13 13.0 0.1 0.26 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Lactamase_B PF00753.22 gi|330835437|ref|YP_004410165.1| - 4.5e-16 59.0 0.0 5.7e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3211 PF11485.3 gi|330835438|ref|YP_004410166.1| - 0.0057 16.6 0.4 0.011 15.8 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) Lipoprotein_17 PF04200.7 gi|330835438|ref|YP_004410166.1| - 0.59 10.3 4.1 0.26 11.4 0.3 2.2 2 1 0 2 2 2 0 Lipoprotein associated domain Radical_SAM PF04055.16 gi|330835440|ref|YP_004410168.1| - 1.6e-16 60.9 0.1 7.5e-16 58.7 0.0 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330835440|ref|YP_004410168.1| - 1.5e-10 41.3 0.0 2.9e-10 40.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330835440|ref|YP_004410168.1| - 2.6e-07 30.6 0.0 5.3e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|330835440|ref|YP_004410168.1| - 0.0041 17.4 0.4 0.046 14.0 0.0 2.9 3 1 0 3 3 3 1 Iron-sulfur cluster-binding domain Peptidase_U32 PF01136.14 gi|330835441|ref|YP_004410169.1| - 1.4e-20 73.2 0.0 4.7e-20 71.5 0.0 1.7 1 1 0 1 1 1 1 Peptidase family U32 Shikimate_dh_N PF08501.6 gi|330835441|ref|YP_004410169.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 Shikimate dehydrogenase substrate binding domain TIR-like PF10137.4 gi|330835441|ref|YP_004410169.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Predicted nucleotide-binding protein containing TIR-like domain Lactamase_B PF00753.22 gi|330835442|ref|YP_004410170.1| - 7.4e-23 81.2 0.5 9.2e-23 80.9 0.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330835442|ref|YP_004410170.1| - 3e-05 23.6 0.1 3.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.16 gi|330835443|ref|YP_004410171.1| - 1.1e-15 58.2 0.0 1.6e-15 57.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.1 gi|330835443|ref|YP_004410171.1| - 2.1e-06 27.9 0.5 5e-06 26.7 0.3 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.1 gi|330835443|ref|YP_004410171.1| - 5.7e-06 26.5 0.0 1.8e-05 24.9 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain DUF1906 PF08924.6 gi|330835443|ref|YP_004410171.1| - 0.0012 18.7 0.0 0.002 17.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) AAA_assoc PF14363.1 gi|330835443|ref|YP_004410171.1| - 0.0032 17.4 0.0 0.0055 16.7 0.0 1.4 1 0 0 1 1 1 1 Domain associated at C-terminal with AAA Fer4_14 PF13394.1 gi|330835443|ref|YP_004410171.1| - 0.022 14.7 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain YyzF PF14116.1 gi|330835443|ref|YP_004410171.1| - 0.12 12.3 0.0 18 5.3 0.0 2.4 2 0 0 2 2 2 0 YyzF-like protein Radical_SAM PF04055.16 gi|330835444|ref|YP_004410172.1| - 1.2e-24 87.3 0.0 3e-24 86.0 0.0 1.7 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|330835444|ref|YP_004410172.1| - 1e-09 38.6 0.0 2.8e-09 37.2 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|330835444|ref|YP_004410172.1| - 2.3e-09 37.3 0.0 8.3e-09 35.5 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain FMO-like PF00743.14 gi|330835444|ref|YP_004410172.1| - 0.12 10.5 0.0 0.17 10.0 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like TPP_enzyme_C PF02775.16 gi|330835445|ref|YP_004410173.1| - 9.5e-21 73.9 0.0 1.4e-20 73.4 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|330835445|ref|YP_004410173.1| - 0.0022 16.9 0.0 0.0033 16.4 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|330835445|ref|YP_004410173.1| - 0.011 14.4 0.0 0.018 13.7 0.0 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Adeno_PX PF05829.7 gi|330835445|ref|YP_004410173.1| - 0.14 11.7 2.6 0.3 10.5 1.8 1.5 1 0 0 1 1 1 0 Adenovirus late L2 mu core protein (Protein X) POR_N PF01855.14 gi|330835446|ref|YP_004410174.1| - 2.6e-71 239.7 0.7 3.4e-71 239.4 0.5 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|330835446|ref|YP_004410174.1| - 3.2e-07 30.3 0.0 8.3e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.22 gi|330835447|ref|YP_004410175.1| - 5.1e-13 48.0 16.1 6.5e-09 35.0 4.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330835447|ref|YP_004410175.1| - 3.7e-11 42.6 20.2 1.7e-07 30.8 7.3 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835447|ref|YP_004410175.1| - 8.8e-11 41.4 8.1 1.1e-10 41.1 5.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835447|ref|YP_004410175.1| - 3.9e-10 39.1 14.9 7.6e-06 25.5 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330835447|ref|YP_004410175.1| - 4e-09 36.7 10.2 5.5e-09 36.2 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835447|ref|YP_004410175.1| - 4.7e-09 35.6 11.4 2.8e-05 23.7 2.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835447|ref|YP_004410175.1| - 2.5e-07 30.8 11.3 3.2e-07 30.5 7.9 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835447|ref|YP_004410175.1| - 4e-07 30.6 8.2 0.00029 21.5 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330835447|ref|YP_004410175.1| - 2.5e-05 24.5 6.8 0.029 14.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330835447|ref|YP_004410175.1| - 0.0001 22.3 14.9 0.013 15.8 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835447|ref|YP_004410175.1| - 0.00039 20.3 12.1 0.019 14.9 2.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835447|ref|YP_004410175.1| - 0.037 14.5 10.9 0.041 14.4 2.9 2.4 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|330835447|ref|YP_004410175.1| - 0.13 12.6 10.1 0.39 11.1 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330835447|ref|YP_004410175.1| - 0.32 11.6 16.1 0.4 11.3 5.9 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|330835447|ref|YP_004410175.1| - 2.3 8.6 15.2 0.2 12.0 3.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.13 gi|330835448|ref|YP_004410176.1| - 2.8e-38 131.5 0.0 3.2e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Viral_Beta_CD PF04530.7 gi|330835449|ref|YP_004410177.1| - 0.045 13.9 0.2 7.2 6.8 0.0 2.2 2 0 0 2 2 2 0 Viral Beta C/D like family DUF708 PF05341.6 gi|330835449|ref|YP_004410177.1| - 0.13 12.0 0.6 0.82 9.4 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF708) E1-E2_ATPase PF00122.15 gi|330835450|ref|YP_004410178.1| - 6.7e-59 198.7 5.7 6.7e-59 198.7 4.0 2.8 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330835450|ref|YP_004410178.1| - 3.7e-30 105.9 0.1 7.3e-30 104.9 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|330835450|ref|YP_004410178.1| - 2.4e-14 53.9 0.0 6.8e-14 52.4 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.21 gi|330835450|ref|YP_004410178.1| - 8.8e-13 47.5 0.0 2.9e-12 45.8 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.7 gi|330835450|ref|YP_004410178.1| - 1.2e-05 25.0 0.3 7.9e-05 22.3 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|330835450|ref|YP_004410178.1| - 0.0023 17.8 0.0 0.0096 15.8 0.0 2.0 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit EB_dh PF09459.5 gi|330835451|ref|YP_004410179.1| - 3.9e-76 255.9 1.7 5.9e-76 255.3 1.2 1.3 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase DUF3439 PF11921.3 gi|330835451|ref|YP_004410179.1| - 0.0094 15.6 12.2 0.021 14.5 8.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3439) Rifin_STEVOR PF02009.11 gi|330835451|ref|YP_004410179.1| - 0.058 13.0 0.3 0.079 12.5 0.2 1.2 1 0 0 1 1 1 0 Rifin/stevor family SSP160 PF06933.6 gi|330835451|ref|YP_004410179.1| - 0.079 10.9 15.6 0.11 10.4 10.8 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 TMEM154 PF15102.1 gi|330835451|ref|YP_004410179.1| - 0.28 10.8 8.1 0.58 9.8 5.6 1.4 1 0 0 1 1 1 0 TMEM154 protein family DUF912 PF06024.7 gi|330835451|ref|YP_004410179.1| - 1.3 9.0 4.2 0.19 11.8 0.2 1.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Mucin PF01456.12 gi|330835451|ref|YP_004410179.1| - 5.5 6.7 23.1 11 5.7 16.0 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein Rieske PF00355.21 gi|330835453|ref|YP_004410181.1| - 9.7e-11 41.1 0.7 2.2e-10 39.9 0.5 1.5 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2117 PF09890.4 gi|330835453|ref|YP_004410181.1| - 0.033 13.3 0.0 0.046 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) CytB6-F_Fe-S PF08802.5 gi|330835453|ref|YP_004410181.1| - 0.26 11.3 0.2 0.26 11.3 0.1 2.0 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Cytochrom_B_N_2 PF13631.1 gi|330835454|ref|YP_004410182.1| - 2.2e-55 186.9 10.2 2.2e-55 186.9 7.1 4.3 3 2 1 4 4 4 2 Cytochrome b(N-terminal)/b6/petB Cortexin PF11057.3 gi|330835454|ref|YP_004410182.1| - 2 8.0 5.5 3.5 7.2 0.1 3.1 3 0 0 3 3 3 0 Cortexin of kidney ABM PF03992.11 gi|330835455|ref|YP_004410183.1| - 7.3e-16 57.9 0.0 8.5e-16 57.7 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Dabb PF07876.7 gi|330835455|ref|YP_004410183.1| - 0.0015 18.9 0.1 0.0019 18.6 0.0 1.1 1 0 0 1 1 1 1 Stress responsive A/B Barrel Domain SOR PF07682.6 gi|330835455|ref|YP_004410183.1| - 0.0039 15.8 0.1 0.09 11.3 0.0 2.0 1 1 1 2 2 2 2 Sulphur oxygenase reductase RNA_pol_Rpb1_6 PF04992.9 gi|330835455|ref|YP_004410183.1| - 0.027 14.2 0.2 0.032 13.9 0.2 1.1 1 0 0 1 1 1 0 RNA polymerase Rpb1, domain 6 5-FTHF_cyc-lig PF01812.15 gi|330835456|ref|YP_004410184.1| - 1.1e-32 113.2 0.0 1.4e-32 113.0 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Arginase PF00491.16 gi|330835457|ref|YP_004410185.1| - 7.7e-77 258.2 0.0 9.4e-77 258.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.2 gi|330835457|ref|YP_004410185.1| - 0.15 12.2 0.8 0.33 11.1 0.6 1.6 1 1 0 1 1 1 0 UPF0489 domain Peptidase_M20 PF01546.23 gi|330835458|ref|YP_004410186.1| - 6e-30 104.1 0.0 7.4e-30 103.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|330835458|ref|YP_004410186.1| - 7.3e-14 51.4 0.0 1.4e-13 50.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Arc_trans_TRASH PF08394.5 gi|330835459|ref|YP_004410187.1| - 1.7e-16 60.0 7.7 1.7e-16 60.0 5.3 1.7 2 0 0 2 2 1 1 Archaeal TRASH domain HTH_24 PF13412.1 gi|330835459|ref|YP_004410187.1| - 3e-11 42.5 0.1 5e-11 41.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330835459|ref|YP_004410187.1| - 7.6e-09 35.0 1.0 1.5e-08 34.1 0.1 1.9 3 0 0 3 3 1 1 HTH domain TrmB PF01978.14 gi|330835459|ref|YP_004410187.1| - 1.2e-08 34.5 0.8 2.6e-08 33.4 0.5 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.1 gi|330835459|ref|YP_004410187.1| - 1.5e-07 30.8 0.1 2.1e-07 30.3 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|330835459|ref|YP_004410187.1| - 6.4e-06 25.7 0.0 1.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|330835459|ref|YP_004410187.1| - 7.5e-06 25.5 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|330835459|ref|YP_004410187.1| - 1.2e-05 24.7 0.0 2.3e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.16 gi|330835459|ref|YP_004410187.1| - 3.6e-05 23.1 0.1 6.2e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|330835459|ref|YP_004410187.1| - 6e-05 22.9 0.1 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.1 gi|330835459|ref|YP_004410187.1| - 0.00014 21.9 0.1 0.00027 20.9 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_6 PF01418.12 gi|330835459|ref|YP_004410187.1| - 0.00018 21.1 0.2 0.00047 19.8 0.1 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family HTH_34 PF13601.1 gi|330835459|ref|YP_004410187.1| - 0.00039 20.3 0.1 0.00085 19.3 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|330835459|ref|YP_004410187.1| - 0.00057 20.1 0.0 0.00086 19.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_7 PF02796.10 gi|330835459|ref|YP_004410187.1| - 0.00061 19.5 0.3 0.0022 17.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.1 gi|330835459|ref|YP_004410187.1| - 0.00067 19.1 0.2 0.0012 18.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|330835459|ref|YP_004410187.1| - 0.00073 19.0 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|330835459|ref|YP_004410187.1| - 0.001 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|330835459|ref|YP_004410187.1| - 0.0017 18.2 0.2 0.0049 16.7 0.1 1.8 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|330835459|ref|YP_004410187.1| - 0.002 18.1 0.2 0.015 15.3 0.1 2.1 2 0 0 2 2 2 1 Penicillinase repressor Cro PF09048.5 gi|330835459|ref|YP_004410187.1| - 0.0027 17.2 0.1 0.0077 15.8 0.1 1.7 2 0 0 2 2 1 1 Cro Rrf2 PF02082.15 gi|330835459|ref|YP_004410187.1| - 0.0039 17.2 0.1 0.0087 16.1 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Mga PF05043.8 gi|330835459|ref|YP_004410187.1| - 0.0044 17.2 0.1 0.0078 16.4 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_5 PF01022.15 gi|330835459|ref|YP_004410187.1| - 0.0047 16.5 0.2 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|330835459|ref|YP_004410187.1| - 0.005 16.6 0.0 0.0089 15.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|330835459|ref|YP_004410187.1| - 0.0054 16.8 0.0 0.0086 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix zf-FCS PF06467.9 gi|330835459|ref|YP_004410187.1| - 0.0078 15.8 2.8 0.014 14.9 1.9 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2582 PF10771.4 gi|330835459|ref|YP_004410187.1| - 0.0092 15.8 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2582) TFIIE_alpha PF02002.12 gi|330835459|ref|YP_004410187.1| - 0.0093 15.4 0.2 0.016 14.6 0.1 1.6 1 1 0 1 1 1 1 TFIIE alpha subunit EAP30 PF04157.11 gi|330835459|ref|YP_004410187.1| - 0.0095 15.1 0.3 0.049 12.7 0.1 1.9 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_CodY PF08222.6 gi|330835459|ref|YP_004410187.1| - 0.011 15.0 0.1 0.03 13.6 0.1 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_10 PF04967.7 gi|330835459|ref|YP_004410187.1| - 0.014 14.9 0.2 0.033 13.7 0.1 1.7 1 1 0 1 1 1 0 HTH DNA binding domain DUF977 PF06163.6 gi|330835459|ref|YP_004410187.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_Mga PF08280.6 gi|330835459|ref|YP_004410187.1| - 0.022 14.5 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF603 PF04645.7 gi|330835459|ref|YP_004410187.1| - 0.026 14.4 0.1 0.026 14.4 0.1 1.6 2 0 0 2 2 1 0 Protein of unknown function, DUF603 DUF2250 PF10007.4 gi|330835459|ref|YP_004410187.1| - 0.037 13.9 0.9 0.052 13.4 0.1 1.7 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_3 PF01381.17 gi|330835459|ref|YP_004410187.1| - 0.04 13.7 0.3 0.091 12.6 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix RPA_C PF08784.6 gi|330835459|ref|YP_004410187.1| - 0.042 14.2 0.0 0.071 13.5 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal GerE PF00196.14 gi|330835459|ref|YP_004410187.1| - 0.042 13.1 1.2 0.097 11.9 0.2 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_39 PF14090.1 gi|330835459|ref|YP_004410187.1| - 0.043 13.3 0.0 0.075 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|330835459|ref|YP_004410187.1| - 0.047 13.2 0.1 0.3 10.6 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|330835459|ref|YP_004410187.1| - 0.049 13.1 0.3 0.086 12.3 0.2 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_19 PF12844.2 gi|330835459|ref|YP_004410187.1| - 0.05 13.6 0.2 0.13 12.2 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain FeoC PF09012.5 gi|330835459|ref|YP_004410187.1| - 0.052 13.2 3.1 0.069 12.8 0.0 2.5 3 0 0 3 3 2 0 FeoC like transcriptional regulator HTH_9 PF08221.6 gi|330835459|ref|YP_004410187.1| - 0.065 13.1 0.1 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Sigma70_r4 PF04545.11 gi|330835459|ref|YP_004410187.1| - 0.073 12.4 0.2 0.14 11.4 0.1 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 Zn_ribbon_recom PF13408.1 gi|330835459|ref|YP_004410187.1| - 0.074 13.3 4.9 0.19 12.0 3.4 1.7 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain HTH_1 PF00126.22 gi|330835459|ref|YP_004410187.1| - 0.1 12.3 0.2 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.1 gi|330835459|ref|YP_004410187.1| - 0.16 12.1 0.1 0.25 11.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2757 PF10955.3 gi|330835459|ref|YP_004410187.1| - 0.26 11.5 2.7 0.73 10.0 0.0 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF2757) YHS PF04945.8 gi|330835460|ref|YP_004410188.1| - 1.2e-20 73.0 0.6 1.5e-20 72.7 0.4 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.9 gi|330835460|ref|YP_004410188.1| - 3.4e-05 23.4 0.5 5.5e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.5 gi|330835460|ref|YP_004410188.1| - 0.00049 20.1 1.2 0.00069 19.7 0.8 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain Ribosomal_L24e PF01246.15 gi|330835460|ref|YP_004410188.1| - 0.037 13.8 0.1 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L24e ATPase-cat_bd PF12156.3 gi|330835460|ref|YP_004410188.1| - 0.055 14.0 0.1 0.067 13.7 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.15 gi|330835461|ref|YP_004410189.1| - 2.3e-51 174.0 0.3 2.3e-51 174.0 0.2 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|330835461|ref|YP_004410189.1| - 2.3e-32 113.1 0.0 7.8e-32 111.4 0.0 2.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|330835461|ref|YP_004410189.1| - 1.3e-17 63.6 7.4 5.2e-11 42.5 0.9 2.8 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|330835461|ref|YP_004410189.1| - 5.6e-16 59.2 0.0 1.2e-15 58.1 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|330835461|ref|YP_004410189.1| - 7.3e-05 22.4 0.2 0.021 14.4 0.1 2.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase KH_5 PF13184.1 gi|330835461|ref|YP_004410189.1| - 0.015 15.0 0.3 4.9 7.0 0.0 3.2 2 0 0 2 2 2 0 NusA-like KH domain NIF PF03031.13 gi|330835461|ref|YP_004410189.1| - 0.038 13.6 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase DNA_ligase_OB PF03120.11 gi|330835461|ref|YP_004410189.1| - 0.096 12.3 3.7 0.15 11.7 0.1 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase OB-fold domain Rieske PF00355.21 gi|330835463|ref|YP_004410191.1| - 5.4e-11 41.9 0.1 1e-10 41.0 0.1 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain UCR_Fe-S_N PF10399.4 gi|330835463|ref|YP_004410191.1| - 0.017 14.2 1.4 0.032 13.4 1.0 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SoxE PF06525.6 gi|330835465|ref|YP_004410193.1| - 1.9e-64 216.5 14.8 2.2e-64 216.3 10.3 1.0 1 0 0 1 1 1 1 Sulfocyanin (SoxE) Copper-bind PF00127.15 gi|330835465|ref|YP_004410193.1| - 0.00024 21.2 0.0 0.00071 19.7 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF948 PF06103.6 gi|330835465|ref|YP_004410193.1| - 0.1 12.4 2.5 0.16 11.8 1.7 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) BacteriocIIc_cy PF12173.3 gi|330835465|ref|YP_004410193.1| - 2.9 7.9 6.5 0.77 9.8 0.5 2.3 2 1 1 3 3 3 0 Bacteriocin class IIc cyclic gassericin A-like DUF4083 PF13314.1 gi|330835466|ref|YP_004410194.1| - 0.1 12.4 0.4 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) COX2 PF00116.15 gi|330835467|ref|YP_004410195.1| - 6.6e-11 42.0 0.5 9.9e-11 41.5 0.3 1.3 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Y_Y_Y PF07495.8 gi|330835467|ref|YP_004410195.1| - 0.052 13.3 0.6 0.78 9.5 0.0 2.7 4 0 0 4 4 4 0 Y_Y_Y domain COX1 PF00115.15 gi|330835468|ref|YP_004410196.1| - 1.7e-72 244.4 69.1 2.3e-72 244.0 47.9 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Peptidase_M50 PF02163.17 gi|330835468|ref|YP_004410196.1| - 0.011 14.6 0.2 4.4 6.2 0.5 3.0 2 1 0 2 2 2 0 Peptidase family M50 DUF1404 PF07185.6 gi|330835469|ref|YP_004410197.1| - 3.8e-48 163.2 13.2 4.2e-48 163.0 9.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.5 gi|330835469|ref|YP_004410197.1| - 0.01 14.8 8.8 0.015 14.2 6.1 1.3 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF202 PF02656.10 gi|330835469|ref|YP_004410197.1| - 1.3 9.3 5.0 14 6.0 3.3 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Tmemb_14 PF03647.8 gi|330835469|ref|YP_004410197.1| - 3.8 7.9 10.0 1.3 9.4 4.2 2.1 2 1 0 2 2 2 0 Transmembrane proteins 14C Molydop_binding PF01568.16 gi|330835470|ref|YP_004410198.1| - 4.6e-15 55.3 0.0 1.2e-14 54.0 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|330835470|ref|YP_004410198.1| - 0.098 12.4 0.1 0.22 11.3 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain HTH_8 PF02954.14 gi|330835470|ref|YP_004410198.1| - 0.21 11.1 0.3 0.72 9.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family Ank PF00023.25 gi|330835471|ref|YP_004410199.1| - 8.4e-07 28.5 0.0 0.015 15.0 0.0 2.1 2 0 0 2 2 2 2 Ankyrin repeat Ank_5 PF13857.1 gi|330835471|ref|YP_004410199.1| - 8.6e-07 29.0 0.0 1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Ankyrin repeats (many copies) Ank_4 PF13637.1 gi|330835471|ref|YP_004410199.1| - 1.2e-05 25.6 0.0 1.6e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Ankyrin repeats (many copies) Ank_2 PF12796.2 gi|330835471|ref|YP_004410199.1| - 2.5e-05 24.5 0.0 2.8e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Ankyrin repeats (3 copies) Ank_3 PF13606.1 gi|330835471|ref|YP_004410199.1| - 0.0012 18.9 0.0 0.29 11.4 0.0 2.2 2 0 0 2 2 2 2 Ankyrin repeat Pyr_redox_2 PF07992.9 gi|330835472|ref|YP_004410200.1| - 3.8e-29 102.0 0.0 2.2e-28 99.5 0.0 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835472|ref|YP_004410200.1| - 4.1e-21 75.1 0.1 7.9e-18 64.6 0.1 2.8 3 0 0 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.1 gi|330835472|ref|YP_004410200.1| - 8.2e-14 51.6 0.0 2.4e-12 46.9 0.0 2.5 2 0 0 2 2 2 1 Reductase C-terminal Pyr_redox_3 PF13738.1 gi|330835472|ref|YP_004410200.1| - 2.4e-10 40.8 0.6 0.013 15.5 0.1 3.6 3 1 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|330835472|ref|YP_004410200.1| - 2.9e-09 36.2 0.3 0.0086 15.0 0.0 3.5 2 2 1 3 3 3 2 FAD dependent oxidoreductase CPSase_L_chain PF00289.17 gi|330835472|ref|YP_004410200.1| - 6.7e-08 32.6 0.0 0.0037 17.3 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_9 PF13454.1 gi|330835472|ref|YP_004410200.1| - 1.8e-06 27.7 0.1 0.42 10.3 0.0 4.1 3 1 1 4 4 4 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.1 gi|330835472|ref|YP_004410200.1| - 1.9e-06 28.0 0.0 0.013 15.7 0.1 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding NAD_binding_8 PF13450.1 gi|330835472|ref|YP_004410200.1| - 2e-06 27.7 0.0 0.01 15.8 0.0 2.9 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|330835472|ref|YP_004410200.1| - 2.1e-05 24.4 0.3 0.15 12.0 0.0 3.0 3 0 0 3 3 3 2 TrkA-N domain HI0933_like PF03486.9 gi|330835472|ref|YP_004410200.1| - 9e-05 21.1 0.1 1.1 7.6 0.0 3.8 3 1 1 4 4 4 1 HI0933-like protein Shikimate_DH PF01488.15 gi|330835472|ref|YP_004410200.1| - 0.00025 21.1 0.1 0.28 11.2 0.1 2.7 3 0 0 3 3 2 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|330835472|ref|YP_004410200.1| - 0.0012 17.7 0.1 2.1 7.1 0.1 3.4 3 1 1 4 4 4 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|330835472|ref|YP_004410200.1| - 0.0014 17.6 0.0 0.73 8.6 0.0 2.6 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|330835472|ref|YP_004410200.1| - 0.0024 16.8 0.0 1.7 7.3 0.0 3.2 3 0 0 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|330835472|ref|YP_004410200.1| - 0.0028 16.8 0.0 0.011 14.9 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|330835472|ref|YP_004410200.1| - 0.0033 16.9 0.0 1.5 8.3 0.0 2.4 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain DUF1188 PF06690.6 gi|330835472|ref|YP_004410200.1| - 0.0052 15.9 0.1 0.017 14.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF1188) FAD_binding_3 PF01494.14 gi|330835472|ref|YP_004410200.1| - 0.0071 15.4 0.0 0.063 12.3 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|330835472|ref|YP_004410200.1| - 0.012 15.3 0.0 0.046 13.3 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K_oxygenase PF13434.1 gi|330835472|ref|YP_004410200.1| - 0.039 12.8 0.0 1.8 7.3 0.0 2.4 2 1 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) ThiF PF00899.16 gi|330835472|ref|YP_004410200.1| - 0.044 13.6 0.0 0.27 11.0 0.1 2.1 2 0 0 2 2 2 0 ThiF family AdoHcyase_NAD PF00670.16 gi|330835472|ref|YP_004410200.1| - 0.048 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|330835472|ref|YP_004410200.1| - 0.07 12.5 0.0 14 5.1 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA MFS_1 PF07690.11 gi|330835473|ref|YP_004410201.1| - 4.1e-30 104.6 38.6 4.1e-30 104.6 26.8 1.9 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.8 gi|330835473|ref|YP_004410201.1| - 1.1e-06 27.1 15.0 5.3e-06 24.8 2.4 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector SBP56 PF05694.6 gi|330835475|ref|YP_004410203.1| - 1.9e-32 112.3 0.1 2.1e-32 112.2 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) DUF1958 PF09211.5 gi|330835475|ref|YP_004410203.1| - 0.051 13.6 0.0 0.061 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1958) CBS PF00571.23 gi|330835477|ref|YP_004410205.1| - 3.9e-27 93.7 6.5 4e-11 42.5 0.0 5.2 4 1 0 4 4 4 4 CBS domain Fer4_2 PF12797.2 gi|330835477|ref|YP_004410205.1| - 4.2e-09 35.7 14.1 0.00022 20.9 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|330835477|ref|YP_004410205.1| - 4.3e-09 35.6 19.7 3.8e-06 26.2 5.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835477|ref|YP_004410205.1| - 4.7e-09 35.9 15.5 8.9e-09 35.0 10.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835477|ref|YP_004410205.1| - 9.4e-08 31.7 28.6 3e-06 26.9 11.4 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835477|ref|YP_004410205.1| - 2.8e-06 27.6 18.8 5.3e-06 26.7 13.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330835477|ref|YP_004410205.1| - 7.7e-06 25.8 17.3 1.4e-05 25.0 12.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835477|ref|YP_004410205.1| - 9.2e-06 25.3 21.4 0.012 15.5 3.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835477|ref|YP_004410205.1| - 6.1e-05 23.1 18.4 9.9e-05 22.5 12.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330835477|ref|YP_004410205.1| - 0.00051 20.1 16.7 0.0031 17.7 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|330835477|ref|YP_004410205.1| - 0.0013 18.5 6.4 0.069 13.0 0.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835477|ref|YP_004410205.1| - 0.0016 19.1 8.5 0.024 15.3 0.5 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|330835477|ref|YP_004410205.1| - 0.24 11.7 20.8 15 6.0 14.4 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835477|ref|YP_004410205.1| - 0.5 10.8 18.1 0.32 11.4 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835477|ref|YP_004410205.1| - 0.67 10.5 18.0 7.2 7.2 4.2 2.8 1 1 1 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|330835477|ref|YP_004410205.1| - 5.3 7.8 23.9 0.85 10.3 6.4 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain RHH_1 PF01402.16 gi|330835478|ref|YP_004410206.1| - 4.6e-07 29.4 0.1 3.4e-06 26.6 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2811 PF10929.3 gi|330835478|ref|YP_004410206.1| - 0.011 15.7 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2811) DUF4356 PF14266.1 gi|330835478|ref|YP_004410206.1| - 0.014 13.8 0.1 0.018 13.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4356) RHH_3 PF12651.2 gi|330835478|ref|YP_004410206.1| - 0.018 14.7 0.1 0.043 13.5 0.0 1.7 2 0 0 2 2 2 0 Ribbon-helix-helix domain SH2_2 PF14633.1 gi|330835478|ref|YP_004410206.1| - 0.037 13.0 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 SH2 domain Condensation PF00668.15 gi|330835478|ref|YP_004410206.1| - 0.05 12.4 0.0 0.057 12.2 0.0 1.2 1 0 0 1 1 1 0 Condensation domain E3_UbLigase_EDD PF11547.3 gi|330835478|ref|YP_004410206.1| - 0.052 13.0 0.0 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD rpo132 PF12415.3 gi|330835478|ref|YP_004410206.1| - 0.11 11.4 0.0 0.22 10.5 0.0 1.6 1 0 0 1 1 1 0 Poxvirus DNA dependent RNA polymerase FmdA_AmdA PF03069.10 gi|330835480|ref|YP_004410208.1| - 3.5e-67 226.6 0.0 1.7e-37 128.9 0.0 2.1 1 1 1 2 2 2 2 Acetamidase/Formamidase family AA_permease_2 PF13520.1 gi|330835481|ref|YP_004410209.1| - 3.1e-27 95.1 60.0 3.1e-27 95.1 41.6 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|330835481|ref|YP_004410209.1| - 8.4e-22 77.1 60.3 8.4e-22 77.1 41.8 1.9 1 1 1 2 2 2 1 Amino acid permease MFS_1 PF07690.11 gi|330835482|ref|YP_004410210.1| - 5e-33 114.2 33.4 5e-33 114.2 23.2 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835482|ref|YP_004410210.1| - 1.9e-32 112.4 26.4 2.2e-32 112.2 18.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter TRI12 PF06609.8 gi|330835482|ref|YP_004410210.1| - 0.00016 20.0 4.7 0.00016 20.0 3.3 1.8 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) Membralin PF09746.4 gi|330835483|ref|YP_004410211.1| - 0.085 11.8 0.0 0.092 11.7 0.0 1.1 1 0 0 1 1 1 0 Tumour-associated protein BPD_transp_1 PF00528.17 gi|330835484|ref|YP_004410212.1| - 1e-15 57.7 31.4 7e-12 45.2 11.5 3.6 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Glycophorin_A PF01102.13 gi|330835484|ref|YP_004410212.1| - 2.5 7.8 5.0 0.89 9.3 0.0 2.4 3 0 0 3 3 3 0 Glycophorin A ABC_tran PF00005.22 gi|330835485|ref|YP_004410213.1| - 3.1e-36 124.6 0.0 6.5e-36 123.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835485|ref|YP_004410213.1| - 5.2e-11 43.0 0.0 0.00031 20.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330835485|ref|YP_004410213.1| - 5.8e-08 32.2 1.0 2.6e-07 30.0 0.7 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|330835485|ref|YP_004410213.1| - 9.3e-08 31.5 0.0 0.0042 16.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain TOBE_2 PF08402.5 gi|330835485|ref|YP_004410213.1| - 1.3e-07 31.4 0.2 3.1e-07 30.2 0.2 1.7 1 0 0 1 1 1 1 TOBE domain AAA_23 PF13476.1 gi|330835485|ref|YP_004410213.1| - 2.5e-06 27.9 0.4 6.9e-06 26.5 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|330835485|ref|YP_004410213.1| - 7.9e-05 22.7 0.0 0.00015 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|330835485|ref|YP_004410213.1| - 8.2e-05 22.4 0.0 0.00013 21.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|330835485|ref|YP_004410213.1| - 0.00028 21.0 0.1 0.00093 19.3 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330835485|ref|YP_004410213.1| - 0.0007 19.0 0.0 0.0017 17.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|330835485|ref|YP_004410213.1| - 0.00089 18.9 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|330835485|ref|YP_004410213.1| - 0.00091 19.5 0.0 0.0018 18.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|330835485|ref|YP_004410213.1| - 0.00091 18.4 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|330835485|ref|YP_004410213.1| - 0.0016 18.3 0.0 0.0031 17.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|330835485|ref|YP_004410213.1| - 0.0019 17.3 0.1 0.052 12.6 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_10 PF12846.2 gi|330835485|ref|YP_004410213.1| - 0.0022 17.4 0.1 0.0055 16.1 0.1 1.8 1 1 1 2 2 2 1 AAA-like domain T2SE PF00437.15 gi|330835485|ref|YP_004410213.1| - 0.0051 15.7 0.2 0.013 14.4 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_14 PF13173.1 gi|330835485|ref|YP_004410213.1| - 0.0063 16.4 0.0 0.23 11.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|330835485|ref|YP_004410213.1| - 0.0073 15.7 0.0 0.019 14.3 0.0 1.6 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|330835485|ref|YP_004410213.1| - 0.0092 15.6 0.0 0.026 14.2 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_17 PF13207.1 gi|330835485|ref|YP_004410213.1| - 0.0094 16.7 0.4 0.023 15.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|330835485|ref|YP_004410213.1| - 0.017 14.7 0.0 0.047 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|330835485|ref|YP_004410213.1| - 0.023 14.6 0.0 0.056 13.3 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA PF00004.24 gi|330835485|ref|YP_004410213.1| - 0.023 14.8 0.3 0.18 11.9 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.4 gi|330835485|ref|YP_004410213.1| - 0.028 13.0 0.8 2.1 6.8 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|330835485|ref|YP_004410213.1| - 0.033 13.6 0.0 0.068 12.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_13 PF13166.1 gi|330835485|ref|YP_004410213.1| - 0.035 12.5 0.0 0.17 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.12 gi|330835485|ref|YP_004410213.1| - 0.038 14.0 0.0 0.15 12.2 0.0 2.1 1 1 0 1 1 1 0 TOBE domain RNA12 PF10443.4 gi|330835485|ref|YP_004410213.1| - 0.049 12.1 0.0 0.086 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA12 protein Miro PF08477.8 gi|330835485|ref|YP_004410213.1| - 0.051 14.0 0.0 0.16 12.4 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein AAA_24 PF13479.1 gi|330835485|ref|YP_004410213.1| - 0.056 13.0 0.1 0.16 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|330835485|ref|YP_004410213.1| - 0.078 12.1 0.2 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein FtsK_SpoIIIE PF01580.13 gi|330835485|ref|YP_004410213.1| - 0.085 12.3 0.0 0.2 11.1 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Rad17 PF03215.10 gi|330835485|ref|YP_004410213.1| - 0.1 11.2 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein UPF0079 PF02367.12 gi|330835485|ref|YP_004410213.1| - 0.11 12.1 0.0 0.24 11.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF4363 PF14276.1 gi|330835485|ref|YP_004410213.1| - 0.11 12.2 0.3 0.42 10.3 0.0 2.0 3 0 0 3 3 2 0 Domain of unknown function (DUF4363) DUF3987 PF13148.1 gi|330835485|ref|YP_004410213.1| - 0.13 10.8 0.0 0.74 8.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) IstB_IS21 PF01695.12 gi|330835485|ref|YP_004410213.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein SBP_bac_1 PF01547.20 gi|330835486|ref|YP_004410214.1| - 9.7e-15 55.0 0.0 2.2e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|330835486|ref|YP_004410214.1| - 1.2e-12 48.1 0.4 2.6e-12 47.0 0.2 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|330835486|ref|YP_004410214.1| - 8.7e-06 25.5 0.5 0.00047 19.8 0.1 2.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|330835486|ref|YP_004410214.1| - 4.2e-05 22.9 0.0 8.6e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ODV-E18 PF10717.4 gi|330835486|ref|YP_004410214.1| - 4.5 6.7 7.2 0.42 10.0 1.0 2.3 3 0 0 3 3 3 0 Occlusion-derived virus envelope protein ODV-E18 DUF4064 PF13273.1 gi|330835487|ref|YP_004410215.1| - 4.7 7.3 11.4 1.8 8.7 6.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) Rifin_STEVOR PF02009.11 gi|330835488|ref|YP_004410216.1| - 0.0015 18.2 2.9 0.0023 17.6 2.0 1.3 1 0 0 1 1 1 1 Rifin/stevor family ATP-synt_8 PF00895.15 gi|330835488|ref|YP_004410216.1| - 0.026 14.7 1.1 0.026 14.7 0.7 3.9 3 1 0 3 3 3 0 ATP synthase protein 8 TMEM154 PF15102.1 gi|330835488|ref|YP_004410216.1| - 0.033 13.8 8.6 0.099 12.3 6.0 1.8 1 0 0 1 1 1 0 TMEM154 protein family Big_3_2 PF12245.3 gi|330835488|ref|YP_004410216.1| - 0.035 13.6 0.5 0.26 10.8 0.3 2.5 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Peptidase_M56 PF05569.6 gi|330835488|ref|YP_004410216.1| - 0.26 10.1 6.9 0.39 9.6 1.3 2.3 2 0 0 2 2 2 0 BlaR1 peptidase M56 DUF2561 PF10812.3 gi|330835488|ref|YP_004410216.1| - 0.56 9.7 5.5 0.54 9.8 3.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2561) Mucin PF01456.12 gi|330835488|ref|YP_004410216.1| - 5.5 6.7 21.4 15 5.3 14.8 1.7 1 0 0 1 1 1 0 Mucin-like glycoprotein MFS_1 PF07690.11 gi|330835489|ref|YP_004410217.1| - 3.4e-28 98.3 80.9 7.9e-22 77.4 30.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835489|ref|YP_004410217.1| - 6e-17 61.3 35.7 3.2e-14 52.3 6.5 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter tRNA_anti-codon PF01336.20 gi|330835490|ref|YP_004410218.1| - 0.015 15.1 0.2 0.026 14.3 0.2 1.5 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain DUF2369 PF10179.4 gi|330835490|ref|YP_004410218.1| - 0.078 12.0 0.0 0.15 11.1 0.0 1.2 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2369) Ldh_1_N PF00056.18 gi|330835491|ref|YP_004410219.1| - 1.5e-30 105.8 0.0 3e-30 104.8 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|330835491|ref|YP_004410219.1| - 1.3e-11 44.5 0.0 1.9e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain F420_oxidored PF03807.12 gi|330835491|ref|YP_004410219.1| - 0.00091 19.6 0.1 0.0027 18.1 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|330835491|ref|YP_004410219.1| - 0.092 12.5 0.1 0.29 10.9 0.1 2.0 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4382 PF14321.1 gi|330835492|ref|YP_004410220.1| - 1.2e-14 54.5 0.1 1.4e-14 54.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4382) DUF1461 PF07314.6 gi|330835492|ref|YP_004410220.1| - 0.021 14.5 0.4 0.021 14.5 0.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1461) CbiA PF01656.18 gi|330835493|ref|YP_004410221.1| - 1.6e-05 24.3 0.0 3.2e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|330835493|ref|YP_004410221.1| - 0.00032 19.8 0.0 0.00068 18.7 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|330835493|ref|YP_004410221.1| - 0.0017 18.2 0.0 0.0044 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|330835493|ref|YP_004410221.1| - 0.046 14.5 0.1 0.12 13.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain YhjQ PF06564.7 gi|330835493|ref|YP_004410221.1| - 0.1 11.9 0.2 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 YhjQ protein RelB_N PF12910.2 gi|330835493|ref|YP_004410221.1| - 0.13 11.6 0.0 0.62 9.4 0.0 2.1 2 0 0 2 2 2 0 Antitoxin of toxin-antitoxin stability system N-terminal Aldo_ket_red PF00248.16 gi|330835494|ref|YP_004410222.1| - 2.5e-70 236.5 0.0 2.8e-70 236.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Nramp PF01566.13 gi|330835495|ref|YP_004410223.1| - 3.4e-42 144.5 23.1 4.2e-42 144.2 16.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DrsE PF02635.10 gi|330835496|ref|YP_004410224.1| - 6.4e-15 55.2 0.0 7.2e-15 55.1 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family LigB PF02900.13 gi|330835497|ref|YP_004410225.1| - 7.7e-56 189.0 0.0 8.5e-56 188.9 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase FF PF01846.14 gi|330835497|ref|YP_004410225.1| - 0.14 12.1 0.1 4.3 7.3 0.0 2.9 3 1 0 3 3 3 0 FF domain zinc_ribbon_2 PF13240.1 gi|330835498|ref|YP_004410226.1| - 6.6e-13 47.6 14.3 8.8e-08 31.4 2.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|330835498|ref|YP_004410226.1| - 6.2e-10 38.7 12.5 8.4e-10 38.3 8.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330835498|ref|YP_004410226.1| - 2.3e-08 33.0 12.8 6.8e-05 21.9 1.3 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-RanBP PF00641.13 gi|330835498|ref|YP_004410226.1| - 0.00088 18.3 10.9 0.019 14.0 1.6 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others DUF973 PF06157.6 gi|330835498|ref|YP_004410226.1| - 0.00096 18.2 16.3 0.0013 17.7 11.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Mu-like_Com PF10122.4 gi|330835498|ref|YP_004410226.1| - 0.21 10.6 12.1 1.5 7.9 0.2 3.1 2 1 1 3 3 3 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|330835498|ref|YP_004410226.1| - 0.74 9.5 16.4 1.1e+02 2.6 7.5 3.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ZPR1 PF03367.8 gi|330835498|ref|YP_004410226.1| - 1.1 8.4 5.4 7.8 5.6 3.8 2.2 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zf-tcix PF14952.1 gi|330835498|ref|YP_004410226.1| - 1.4 8.3 11.2 0.64 9.4 1.6 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding SpoIIIAC PF06686.6 gi|330835498|ref|YP_004410226.1| - 1.5 8.7 7.3 3.8 7.3 0.5 2.5 2 0 0 2 2 2 0 Stage III sporulation protein AC/AD protein family NMD3 PF04981.8 gi|330835498|ref|YP_004410226.1| - 2.1 7.3 8.1 3.5 6.6 0.7 2.1 2 0 0 2 2 2 0 NMD3 family OrfB_Zn_ribbon PF07282.6 gi|330835498|ref|YP_004410226.1| - 5.1 6.8 11.8 3.6 7.3 1.5 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|330835498|ref|YP_004410226.1| - 5.3 6.8 5.7 1.3 8.8 0.2 2.3 1 1 2 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2616 PF11077.3 gi|330835498|ref|YP_004410226.1| - 6.4 6.2 8.1 4.1 6.8 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2616) ABC_tran PF00005.22 gi|330835500|ref|YP_004410228.1| - 2.6e-28 99.0 0.0 6e-28 97.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.7 gi|330835500|ref|YP_004410228.1| - 8.3e-15 54.8 0.1 1.4e-14 54.1 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330835500|ref|YP_004410228.1| - 8.1e-08 32.5 0.3 0.0041 17.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|330835500|ref|YP_004410228.1| - 5.2e-05 23.4 0.4 0.00042 20.4 0.3 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330835500|ref|YP_004410228.1| - 0.00061 19.0 0.2 0.0027 16.9 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|330835500|ref|YP_004410228.1| - 0.001 17.9 0.1 0.0015 17.4 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA_18 PF13238.1 gi|330835500|ref|YP_004410228.1| - 0.0013 19.0 0.1 0.003 17.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain MobB PF03205.9 gi|330835500|ref|YP_004410228.1| - 0.0024 17.5 0.0 0.0044 16.7 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|330835500|ref|YP_004410228.1| - 0.015 14.7 0.1 0.049 13.1 0.0 1.8 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|330835500|ref|YP_004410228.1| - 0.017 15.0 0.2 0.025 14.5 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|330835500|ref|YP_004410228.1| - 0.028 15.2 0.7 0.047 14.5 0.5 1.6 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|330835500|ref|YP_004410228.1| - 0.029 13.4 0.5 0.17 11.0 0.0 2.3 3 0 0 3 3 3 0 KaiC DUF258 PF03193.11 gi|330835500|ref|YP_004410228.1| - 0.03 13.5 0.1 0.051 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|330835500|ref|YP_004410228.1| - 0.031 14.6 0.4 0.095 13.0 0.0 1.7 1 1 1 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|330835500|ref|YP_004410228.1| - 0.044 12.2 0.0 3.1 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|330835500|ref|YP_004410228.1| - 0.057 12.9 0.0 0.083 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_10 PF12846.2 gi|330835500|ref|YP_004410228.1| - 0.089 12.2 0.3 0.68 9.3 0.0 2.1 2 1 0 2 2 2 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|330835500|ref|YP_004410228.1| - 0.13 11.6 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|330835500|ref|YP_004410228.1| - 0.14 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|330835500|ref|YP_004410228.1| - 0.16 11.3 0.2 0.34 10.3 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|330835500|ref|YP_004410228.1| - 0.21 11.1 0.6 0.34 10.4 0.1 1.6 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|330835501|ref|YP_004410229.1| - 1.5e-26 93.3 0.0 2.1e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|330835501|ref|YP_004410229.1| - 6.5e-24 84.0 0.1 1.1e-23 83.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|330835501|ref|YP_004410229.1| - 7.9e-08 32.5 0.3 3.3e-06 27.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|330835501|ref|YP_004410229.1| - 2.3e-05 24.0 0.0 4.5e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|330835501|ref|YP_004410229.1| - 0.00019 21.5 0.2 0.00073 19.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|330835501|ref|YP_004410229.1| - 0.00019 20.7 2.7 0.0025 17.0 1.9 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|330835501|ref|YP_004410229.1| - 0.0016 18.4 0.1 0.0023 17.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|330835501|ref|YP_004410229.1| - 0.0076 15.4 0.1 0.014 14.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|330835501|ref|YP_004410229.1| - 0.0093 14.8 0.0 0.016 14.1 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_25 PF13481.1 gi|330835501|ref|YP_004410229.1| - 0.01 15.2 0.1 0.099 12.0 0.1 2.1 1 1 1 2 2 2 0 AAA domain SopE_GEF PF07487.8 gi|330835501|ref|YP_004410229.1| - 0.01 15.8 0.0 0.051 13.5 0.0 1.8 1 1 1 2 2 2 0 SopE GEF domain AAA_10 PF12846.2 gi|330835501|ref|YP_004410229.1| - 0.012 15.0 0.3 0.32 10.3 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|330835501|ref|YP_004410229.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|330835501|ref|YP_004410229.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|330835501|ref|YP_004410229.1| - 0.036 12.8 0.1 0.062 12.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|330835501|ref|YP_004410229.1| - 0.063 12.9 1.3 0.28 10.8 0.2 2.2 2 0 0 2 2 2 0 NTPase DUF87 PF01935.12 gi|330835501|ref|YP_004410229.1| - 0.081 12.7 0.9 0.4 10.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 Septin PF00735.13 gi|330835501|ref|YP_004410229.1| - 0.095 11.6 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Septin RNA_helicase PF00910.17 gi|330835501|ref|YP_004410229.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|330835501|ref|YP_004410229.1| - 0.15 11.7 0.1 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.17 gi|330835502|ref|YP_004410230.1| - 6.9e-19 68.0 17.0 6.9e-19 68.0 11.8 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|330835502|ref|YP_004410230.1| - 1.3e-05 24.4 1.3 1.3e-05 24.4 0.9 3.2 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|330835503|ref|YP_004410231.1| - 3.7e-32 111.3 16.7 3.7e-32 111.3 11.6 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|330835505|ref|YP_004410233.1| - 1.9e-28 99.3 11.7 3.7e-16 58.9 1.2 2.3 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Protocadherin PF08374.6 gi|330835505|ref|YP_004410233.1| - 0.24 11.0 1.3 0.37 10.4 0.9 1.3 1 0 0 1 1 1 0 Protocadherin Rifin_STEVOR PF02009.11 gi|330835505|ref|YP_004410233.1| - 0.76 9.3 3.7 1.3 8.6 2.5 1.2 1 0 0 1 1 1 0 Rifin/stevor family Peptidase_S9 PF00326.16 gi|330835506|ref|YP_004410234.1| - 2.1e-43 148.0 0.0 3.2e-43 147.4 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|330835506|ref|YP_004410234.1| - 1.6e-13 51.1 0.0 3.4e-12 46.7 0.0 2.2 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|330835506|ref|YP_004410234.1| - 3.3e-13 49.4 0.0 1.6e-12 47.1 0.0 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_5 PF12695.2 gi|330835506|ref|YP_004410234.1| - 3.6e-13 49.5 0.0 5.6e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family BAAT_C PF08840.6 gi|330835506|ref|YP_004410234.1| - 2.1e-07 30.8 0.0 3.1e-05 23.7 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|330835506|ref|YP_004410234.1| - 1.2e-05 24.9 0.0 6.9e-05 22.5 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|330835506|ref|YP_004410234.1| - 5.6e-05 22.6 0.0 0.00052 19.5 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|330835506|ref|YP_004410234.1| - 0.00017 21.0 0.0 0.00066 19.1 0.0 1.9 1 1 0 1 1 1 1 Putative esterase Abhydrolase_1 PF00561.15 gi|330835506|ref|YP_004410234.1| - 0.00017 21.2 0.0 0.014 14.9 0.0 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|330835506|ref|YP_004410234.1| - 0.00073 19.3 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein AXE1 PF05448.7 gi|330835506|ref|YP_004410234.1| - 0.0017 16.9 0.0 0.0037 15.8 0.0 1.5 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) DUF2048 PF09752.4 gi|330835506|ref|YP_004410234.1| - 0.0052 15.7 0.0 0.0082 15.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) DPPIV_N PF00930.16 gi|330835506|ref|YP_004410234.1| - 0.014 13.9 0.2 0.1 11.1 0.0 2.2 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Hydrolase_4 PF12146.3 gi|330835506|ref|YP_004410234.1| - 0.024 14.4 0.1 0.076 12.8 0.1 1.9 1 0 0 1 1 1 0 Putative lysophospholipase Peptidase_S28 PF05577.7 gi|330835506|ref|YP_004410234.1| - 0.028 12.9 0.0 0.044 12.3 0.0 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 FAD_binding_7 PF03441.9 gi|330835507|ref|YP_004410235.1| - 2.6e-82 276.1 0.3 3.6e-82 275.6 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|330835507|ref|YP_004410235.1| - 3.5e-36 124.4 0.0 7.4e-36 123.3 0.0 1.5 2 0 0 2 2 2 1 DNA photolyase OprF PF05736.6 gi|330835507|ref|YP_004410235.1| - 0.11 12.0 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 OprF membrane domain ADH_N PF08240.7 gi|330835508|ref|YP_004410236.1| - 8.3e-26 89.8 0.1 1.6e-25 88.9 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330835508|ref|YP_004410236.1| - 3.2e-18 65.5 0.3 5.1e-18 64.8 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|330835508|ref|YP_004410236.1| - 1.4e-07 32.4 0.0 3e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase BDV_P40 PF06407.6 gi|330835508|ref|YP_004410236.1| - 0.011 14.6 0.0 0.014 14.2 0.0 1.1 1 0 0 1 1 1 0 Borna disease virus P40 protein AlaDh_PNT_C PF01262.16 gi|330835508|ref|YP_004410236.1| - 0.023 14.2 0.1 0.04 13.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_10 PF13460.1 gi|330835508|ref|YP_004410236.1| - 0.049 13.6 0.1 0.07 13.1 0.1 1.2 1 0 0 1 1 1 0 NADH(P)-binding SIS_2 PF13580.1 gi|330835508|ref|YP_004410236.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 SIS domain DUF1691 PF07950.6 gi|330835509|ref|YP_004410237.1| - 0.1 12.5 0.6 0.14 12.0 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1691) TMEM154 PF15102.1 gi|330835509|ref|YP_004410237.1| - 1.4 8.6 5.4 1.5 8.5 3.8 1.3 1 1 0 1 1 1 0 TMEM154 protein family SKG6 PF08693.5 gi|330835509|ref|YP_004410237.1| - 6.3 6.2 6.8 0.62 9.4 1.8 1.5 2 0 0 2 2 2 0 Transmembrane alpha-helix domain FAD-oxidase_C PF02913.14 gi|330835510|ref|YP_004410238.1| - 5.7e-43 147.0 0.0 8.4e-43 146.4 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|330835510|ref|YP_004410238.1| - 6.5e-43 145.5 0.0 1.5e-42 144.3 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Epimerase PF01370.16 gi|330835511|ref|YP_004410239.1| - 7.4e-11 41.9 0.0 1e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|330835511|ref|YP_004410239.1| - 2.8e-07 29.7 0.0 3.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|330835511|ref|YP_004410239.1| - 2.6e-05 24.2 0.0 3.6e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|330835511|ref|YP_004410239.1| - 0.00031 19.8 0.0 0.00059 18.9 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase RmlD_sub_bind PF04321.12 gi|330835511|ref|YP_004410239.1| - 0.0026 16.7 0.0 0.0034 16.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Pyr_redox PF00070.22 gi|330835511|ref|YP_004410239.1| - 0.068 13.5 0.0 0.16 12.3 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TPP_enzyme_N PF02776.13 gi|330835513|ref|YP_004410241.1| - 2.4e-42 144.3 0.0 1.1e-41 142.1 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|330835513|ref|YP_004410241.1| - 3.3e-13 49.4 0.0 8.1e-13 48.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|330835513|ref|YP_004410241.1| - 8.5e-08 32.0 0.0 7e-07 29.0 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|330835513|ref|YP_004410241.1| - 0.059 12.8 0.1 0.13 11.7 0.0 1.5 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PPDK_N PF01326.14 gi|330835514|ref|YP_004410242.1| - 3.1e-68 230.2 0.0 3.6e-68 230.0 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EF-hand_8 PF13833.1 gi|330835514|ref|YP_004410242.1| - 0.094 12.3 0.2 0.23 11.1 0.1 1.6 1 0 0 1 1 1 0 EF-hand domain pair Isochorismatase PF00857.15 gi|330835515|ref|YP_004410243.1| - 6.4e-38 130.3 0.0 7.3e-38 130.2 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family NRPS PF08415.5 gi|330835515|ref|YP_004410243.1| - 0.15 11.8 0.1 0.29 10.9 0.0 1.5 1 0 0 1 1 1 0 Nonribosomal peptide synthase DUF3834 PF12916.2 gi|330835516|ref|YP_004410244.1| - 2e-77 258.7 0.1 2.4e-77 258.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) Phosphonate-bd PF12974.2 gi|330835516|ref|YP_004410244.1| - 0.036 13.4 0.1 3.7 6.8 0.0 2.5 3 0 0 3 3 3 0 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|330835516|ref|YP_004410244.1| - 0.09 12.0 0.0 0.14 11.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 FMN_red PF03358.10 gi|330835517|ref|YP_004410245.1| - 8.2e-17 61.1 0.0 1.2e-16 60.5 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|330835517|ref|YP_004410245.1| - 1.3e-05 24.8 0.0 5.9e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|330835517|ref|YP_004410245.1| - 5.9e-05 23.0 0.0 0.00052 20.0 0.0 2.3 2 1 1 3 3 3 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|330835517|ref|YP_004410245.1| - 0.026 14.5 0.0 4.7 7.2 0.0 2.3 1 1 1 2 2 2 0 Flavodoxin Flavodoxin_4 PF12682.2 gi|330835517|ref|YP_004410245.1| - 0.13 11.5 0.0 0.33 10.3 0.0 1.7 1 1 1 2 2 2 0 Flavodoxin RNA_pol_Rpb5_C PF01191.14 gi|330835518|ref|YP_004410246.1| - 0.0057 16.2 0.0 0.015 14.8 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb5, C-terminal domain Sugar_tr PF00083.19 gi|330835519|ref|YP_004410247.1| - 7.7e-42 143.4 21.1 1e-41 142.9 14.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|330835519|ref|YP_004410247.1| - 2e-27 95.8 55.8 5.7e-24 84.4 17.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily PAP2 PF01569.16 gi|330835520|ref|YP_004410248.1| - 1e-22 80.2 4.6 1e-22 80.2 3.2 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|330835520|ref|YP_004410248.1| - 0.018 15.2 1.1 0.018 15.2 0.7 2.7 3 0 0 3 3 3 0 PAP2 superfamily C-terminal PAP2_3 PF14378.1 gi|330835520|ref|YP_004410248.1| - 0.25 10.8 5.5 0.075 12.5 1.0 1.9 2 0 0 2 2 2 0 PAP2 superfamily Sec63 PF02889.11 gi|330835521|ref|YP_004410249.1| - 0.16 11.1 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Sec63 Brl domain Molybdopterin PF00384.17 gi|330835522|ref|YP_004410250.1| - 1.7e-09 36.9 0.0 1.2e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase MFS_1 PF07690.11 gi|330835523|ref|YP_004410251.1| - 2.5e-24 85.6 47.8 1.1e-09 37.4 14.7 2.1 1 1 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330835523|ref|YP_004410251.1| - 0.00058 18.3 10.8 0.00058 18.3 7.5 3.2 2 1 1 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|330835523|ref|YP_004410251.1| - 0.00063 17.9 17.5 0.018 13.1 6.4 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector DUF1625 PF07787.7 gi|330835523|ref|YP_004410251.1| - 0.037 13.2 0.2 0.037 13.2 0.1 2.6 2 2 1 3 3 3 0 Protein of unknown function (DUF1625) DUF4097 PF13349.1 gi|330835524|ref|YP_004410252.1| - 0.00098 18.7 3.7 0.0046 16.5 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4097) DUF3139 PF11337.3 gi|330835524|ref|YP_004410252.1| - 0.01 16.0 0.1 0.01 16.0 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) DUF2371 PF10177.4 gi|330835524|ref|YP_004410252.1| - 0.021 14.7 0.3 0.98 9.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF3185 PF11381.3 gi|330835524|ref|YP_004410252.1| - 0.022 14.5 0.4 0.022 14.5 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF3592 PF12158.3 gi|330835524|ref|YP_004410252.1| - 0.037 13.8 2.2 5.2 6.8 2.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) ASFV_L11L PF05293.6 gi|330835524|ref|YP_004410252.1| - 0.046 13.8 1.4 8.7 6.5 0.4 2.3 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein Tic20 PF09685.5 gi|330835524|ref|YP_004410252.1| - 0.11 12.4 3.0 0.51 10.3 0.2 2.2 2 0 0 2 2 2 0 Tic20-like protein Chordopox_A13L PF05961.6 gi|330835524|ref|YP_004410252.1| - 0.14 12.1 2.1 8.6 6.3 0.5 2.3 2 0 0 2 2 2 0 Chordopoxvirus A13L protein MMgT PF10270.4 gi|330835524|ref|YP_004410252.1| - 0.32 11.4 0.1 0.32 11.4 0.0 1.7 2 0 0 2 2 2 0 Membrane magnesium transporter Tetraspannin PF00335.15 gi|330835524|ref|YP_004410252.1| - 0.58 9.3 4.1 4.3 6.5 2.8 2.0 1 1 0 1 1 1 0 Tetraspanin family YjgP_YjgQ PF03739.9 gi|330835524|ref|YP_004410252.1| - 1 8.0 5.1 0.16 10.6 0.2 1.8 1 1 0 2 2 2 0 Predicted permease YjgP/YjgQ family Claudin_2 PF13903.1 gi|330835524|ref|YP_004410252.1| - 1.9 8.1 3.9 1.6 8.4 0.0 2.2 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction TMEM171 PF15471.1 gi|330835524|ref|YP_004410252.1| - 2.4 6.8 4.4 8.5 5.0 0.6 2.2 2 0 0 2 2 2 0 Transmembrane protein family 171 YtpI PF14007.1 gi|330835524|ref|YP_004410252.1| - 8.9 6.3 7.6 25 4.8 1.6 2.5 2 0 0 2 2 2 0 YtpI-like protein DUF872 PF05915.7 gi|330835524|ref|YP_004410252.1| - 9.4 6.1 8.1 3.7 7.4 0.1 2.4 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) TusA PF01206.12 gi|330835525|ref|YP_004410253.1| - 9.9e-14 50.7 0.0 2.7e-13 49.3 0.0 1.8 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1230 PF06799.6 gi|330835525|ref|YP_004410253.1| - 0.018 14.9 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1230) MFS_1 PF07690.11 gi|330835526|ref|YP_004410254.1| - 1.1e-23 83.5 55.0 8.6e-18 64.1 14.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330835526|ref|YP_004410254.1| - 2.4e-05 22.9 28.8 3.4e-05 22.4 16.3 2.7 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_3 PF05977.8 gi|330835526|ref|YP_004410254.1| - 0.23 9.5 10.8 0.0035 15.5 2.5 1.6 2 0 0 2 2 2 0 Transmembrane secretion effector DUF72 PF01904.13 gi|330835527|ref|YP_004410255.1| - 3.6e-39 134.8 0.1 5e-39 134.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.19 gi|330835528|ref|YP_004410256.1| - 1.4e-24 86.5 31.0 1.8e-19 69.6 8.8 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.11 gi|330835528|ref|YP_004410256.1| - 1.6e-22 79.7 46.6 7.8e-14 51.1 19.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_FMN PF00724.15 gi|330835529|ref|YP_004410257.1| - 1.1e-58 198.8 0.0 1.5e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox PF00070.22 gi|330835529|ref|YP_004410257.1| - 1.3e-08 35.1 2.2 1.2e-06 28.8 0.7 3.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330835529|ref|YP_004410257.1| - 5.6e-07 29.4 0.1 1.3e-06 28.3 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|330835529|ref|YP_004410257.1| - 1.9e-06 27.0 0.1 3e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835529|ref|YP_004410257.1| - 3e-06 26.3 0.0 4.2e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|330835529|ref|YP_004410257.1| - 2.4e-05 23.5 0.1 4.1e-05 22.7 0.1 1.2 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|330835529|ref|YP_004410257.1| - 4.8e-05 22.3 0.0 7.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|330835529|ref|YP_004410257.1| - 0.00013 21.1 0.4 0.00021 20.5 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|330835529|ref|YP_004410257.1| - 0.00019 21.3 0.0 0.00043 20.2 0.0 1.7 2 1 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|330835529|ref|YP_004410257.1| - 0.0002 20.6 0.0 0.0003 20.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|330835529|ref|YP_004410257.1| - 0.00023 19.7 0.1 0.00038 19.0 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|330835529|ref|YP_004410257.1| - 0.00044 20.3 0.0 0.00082 19.4 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|330835529|ref|YP_004410257.1| - 0.00068 19.3 0.0 0.0012 18.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|330835529|ref|YP_004410257.1| - 0.0016 17.4 0.0 0.0027 16.6 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Dus PF01207.12 gi|330835529|ref|YP_004410257.1| - 0.0024 16.7 0.0 0.069 11.9 0.0 2.2 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) Amino_oxidase PF01593.19 gi|330835529|ref|YP_004410257.1| - 0.02 13.9 0.1 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.16 gi|330835529|ref|YP_004410257.1| - 0.072 12.6 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MFS_1 PF07690.11 gi|330835532|ref|YP_004410260.1| - 5.9e-48 163.3 35.1 7.5e-48 163.0 24.3 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_2 PF13347.1 gi|330835532|ref|YP_004410260.1| - 4.4e-09 35.2 5.0 4.4e-09 35.2 3.5 2.2 1 1 1 2 2 2 1 MFS/sugar transport protein ATG22 PF11700.3 gi|330835532|ref|YP_004410260.1| - 0.35 9.2 37.2 0.2 10.0 1.1 3.2 2 1 1 3 3 3 0 Vacuole effluxer Atg22 like AMP-binding PF00501.23 gi|330835533|ref|YP_004410261.1| - 4.4e-74 249.3 0.0 5.3e-74 249.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330835533|ref|YP_004410261.1| - 7.3e-20 71.6 1.8 1.4e-19 70.7 1.2 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain CbiA PF01656.18 gi|330835534|ref|YP_004410262.1| - 8.2e-06 25.3 0.2 9.8e-06 25.0 0.1 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.6 gi|330835534|ref|YP_004410262.1| - 0.002 17.2 0.8 0.0031 16.6 0.2 1.5 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|330835534|ref|YP_004410262.1| - 0.0038 16.3 0.6 0.0074 15.3 0.4 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|330835534|ref|YP_004410262.1| - 0.0062 16.4 0.1 0.024 14.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|330835534|ref|YP_004410262.1| - 0.054 13.3 0.8 0.11 12.3 0.6 1.6 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|330835534|ref|YP_004410262.1| - 0.067 14.0 1.0 0.13 13.1 0.7 1.8 1 1 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|330835534|ref|YP_004410262.1| - 0.092 11.9 0.2 0.18 10.9 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PmbA_TldD PF01523.11 gi|330835535|ref|YP_004410263.1| - 1.7e-45 155.5 0.3 2.2e-45 155.2 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|330835536|ref|YP_004410264.1| - 2.1e-35 122.4 0.6 6.7e-35 120.7 0.4 1.7 1 1 0 1 1 1 1 Putative modulator of DNA gyrase AMP-binding PF00501.23 gi|330835537|ref|YP_004410265.1| - 6.2e-78 262.0 0.0 7.2e-78 261.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330835537|ref|YP_004410265.1| - 2.8e-16 60.2 0.1 7.8e-16 58.7 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF896 PF05979.7 gi|330835537|ref|YP_004410265.1| - 0.015 14.9 0.0 0.045 13.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF896) Acyl-CoA_dh_1 PF00441.19 gi|330835538|ref|YP_004410266.1| - 3.2e-40 137.6 4.4 4.5e-40 137.1 3.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|330835538|ref|YP_004410266.1| - 3.3e-32 111.3 0.1 7.5e-32 110.2 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|330835538|ref|YP_004410266.1| - 1.7e-17 62.6 0.3 3.1e-17 61.8 0.2 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|330835538|ref|YP_004410266.1| - 2.4e-14 53.7 4.4 3.8e-14 53.0 3.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|330835538|ref|YP_004410266.1| - 0.0019 17.6 0.3 0.027 13.8 0.2 2.5 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal PucR PF07905.6 gi|330835538|ref|YP_004410266.1| - 0.071 12.6 0.3 0.73 9.4 0.0 2.6 2 1 1 3 3 3 0 Purine catabolism regulatory protein-like family ECH PF00378.15 gi|330835539|ref|YP_004410267.1| - 2.6e-67 226.5 0.0 5.8e-67 225.3 0.0 1.5 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH_N PF02737.13 gi|330835539|ref|YP_004410267.1| - 1.1e-60 204.3 0.2 1.9e-60 203.5 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|330835539|ref|YP_004410267.1| - 3.2e-43 146.0 0.0 1.9e-24 85.8 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|330835539|ref|YP_004410267.1| - 0.00011 21.9 1.7 0.00052 19.7 0.5 2.6 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|330835539|ref|YP_004410267.1| - 0.0003 21.1 0.1 0.001 19.4 0.1 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ECH_C PF13766.1 gi|330835539|ref|YP_004410267.1| - 0.00096 19.2 0.0 0.0029 17.7 0.0 1.8 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region NAD_binding_2 PF03446.10 gi|330835539|ref|YP_004410267.1| - 0.0021 17.9 0.0 0.0045 16.8 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Glyco_hydro_4 PF02056.11 gi|330835539|ref|YP_004410267.1| - 0.023 14.0 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Peptidase_S49 PF01343.13 gi|330835539|ref|YP_004410267.1| - 0.046 13.4 0.7 0.38 10.5 0.0 2.5 3 0 0 3 3 3 0 Peptidase family S49 UDPG_MGDP_dh_N PF03721.9 gi|330835539|ref|YP_004410267.1| - 0.049 13.0 0.1 0.1 11.9 0.1 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PaaX PF07848.7 gi|330835539|ref|YP_004410267.1| - 0.11 12.5 0.1 2.3 8.2 0.0 2.6 3 0 0 3 3 3 0 PaaX-like protein ADH_N PF08240.7 gi|330835540|ref|YP_004410268.1| - 6e-16 58.1 4.3 1.9e-15 56.5 1.1 2.5 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330835540|ref|YP_004410268.1| - 6e-16 58.1 0.0 8.4e-15 54.4 0.0 2.1 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|330835540|ref|YP_004410268.1| - 2.6e-11 44.5 0.0 4.2e-11 43.8 0.0 1.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase KR PF08659.5 gi|330835540|ref|YP_004410268.1| - 0.001 18.7 0.1 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|330835540|ref|YP_004410268.1| - 0.0027 17.1 0.1 0.004 16.6 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|330835540|ref|YP_004410268.1| - 0.0056 16.6 0.2 0.0098 15.8 0.0 1.5 2 0 0 2 2 2 1 short chain dehydrogenase ELFV_dehydrog PF00208.16 gi|330835540|ref|YP_004410268.1| - 0.018 14.6 0.1 0.027 14.0 0.1 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACP_syn_III_C PF08541.5 gi|330835540|ref|YP_004410268.1| - 0.022 14.7 0.1 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NADH_4Fe-4S PF10589.4 gi|330835540|ref|YP_004410268.1| - 0.027 13.6 2.5 0.056 12.6 1.7 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SIS_2 PF13580.1 gi|330835540|ref|YP_004410268.1| - 0.028 14.1 0.8 0.14 11.8 0.2 2.1 2 0 0 2 2 2 0 SIS domain DUF35 PF01796.12 gi|330835541|ref|YP_004410269.1| - 3.9e-12 46.2 0.2 5.6e-12 45.7 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|330835541|ref|YP_004410269.1| - 2.4e-10 40.0 0.3 5.4e-10 38.8 0.2 1.6 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.2 gi|330835541|ref|YP_004410269.1| - 0.029 14.1 0.3 0.045 13.5 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|330835541|ref|YP_004410269.1| - 0.037 13.7 3.0 0.055 13.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|330835541|ref|YP_004410269.1| - 0.054 13.2 1.9 0.12 12.1 1.3 1.6 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Cucumo_coat PF00760.13 gi|330835541|ref|YP_004410269.1| - 0.076 11.9 0.0 0.53 9.1 0.0 2.0 2 0 0 2 2 2 0 Cucumovirus coat protein zinc_ribbon_5 PF13719.1 gi|330835541|ref|YP_004410269.1| - 0.076 12.6 0.2 0.076 12.6 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain NMD3 PF04981.8 gi|330835541|ref|YP_004410269.1| - 0.097 11.7 0.3 0.19 10.7 0.2 1.5 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|330835541|ref|YP_004410269.1| - 6.2 6.1 7.1 66 2.9 5.0 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330835541|ref|YP_004410269.1| - 7.8 6.5 6.8 3.7 7.5 0.4 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Thiolase_N PF00108.18 gi|330835542|ref|YP_004410270.1| - 6.6e-14 51.5 1.3 7.1e-12 44.8 0.1 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|330835542|ref|YP_004410270.1| - 6.5e-08 32.0 0.1 2.3e-06 27.0 0.0 2.9 3 1 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|330835542|ref|YP_004410270.1| - 1.1e-06 28.3 3.0 1.7e-05 24.4 0.4 2.8 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|330835542|ref|YP_004410270.1| - 0.0053 16.3 0.4 0.049 13.3 0.1 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CsoSCA PF08936.5 gi|330835542|ref|YP_004410270.1| - 0.079 11.3 0.0 0.12 10.6 0.0 1.2 1 0 0 1 1 1 0 Carboxysome Shell Carbonic Anhydrase BMC PF00936.14 gi|330835542|ref|YP_004410270.1| - 2.1 8.0 6.0 3.2 7.4 0.1 3.2 2 1 1 3 3 3 0 BMC domain Peptidase_S9 PF00326.16 gi|330835543|ref|YP_004410271.1| - 1.7e-46 158.1 0.1 2.3e-46 157.7 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|330835543|ref|YP_004410271.1| - 2.6e-12 46.7 0.0 5.2e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330835543|ref|YP_004410271.1| - 7.1e-09 35.8 0.0 1.7e-07 31.3 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|330835543|ref|YP_004410271.1| - 4e-07 29.7 0.1 0.0062 16.0 0.2 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.13 gi|330835543|ref|YP_004410271.1| - 1.7e-06 27.5 0.0 3.9e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family Abhydrolase_2 PF02230.11 gi|330835543|ref|YP_004410271.1| - 0.00053 19.4 0.1 0.0015 18.0 0.0 1.7 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase FSH1 PF03959.8 gi|330835543|ref|YP_004410271.1| - 0.00077 18.9 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_4 PF08386.5 gi|330835543|ref|YP_004410271.1| - 0.0062 16.4 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein DPPIV_N PF00930.16 gi|330835543|ref|YP_004410271.1| - 0.013 14.0 0.0 0.04 12.4 0.0 1.7 2 0 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region BAAT_C PF08840.6 gi|330835543|ref|YP_004410271.1| - 0.045 13.4 0.2 0.9 9.1 0.1 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|330835543|ref|YP_004410271.1| - 0.057 12.9 0.0 0.23 11.0 0.0 1.9 1 1 0 1 1 1 0 alpha/beta hydrolase fold AMP-binding PF00501.23 gi|330835544|ref|YP_004410272.1| - 2.1e-87 293.2 0.0 2.4e-87 293.0 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330835544|ref|YP_004410272.1| - 6.7e-10 39.7 0.2 1.9e-09 38.3 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AA_permease_2 PF13520.1 gi|330835545|ref|YP_004410273.1| - 9.9e-38 129.7 62.0 1.2e-37 129.4 42.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330835545|ref|YP_004410273.1| - 7.8e-11 40.9 49.6 1.3e-10 40.2 34.4 1.3 1 0 0 1 1 1 1 Amino acid permease Pro_CA PF00484.14 gi|330835546|ref|YP_004410274.1| - 3.4e-06 27.1 0.0 5.2e-06 26.5 0.0 1.4 1 1 0 1 1 1 1 Carbonic anhydrase 3HCDH_N PF02737.13 gi|330835547|ref|YP_004410275.1| - 2.2e-54 183.8 0.0 5.9e-54 182.4 0.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|330835547|ref|YP_004410275.1| - 4.3e-28 97.5 0.1 2.2e-23 82.4 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.23 gi|330835548|ref|YP_004410276.1| - 3.5e-19 68.5 0.0 5.1e-19 67.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.1 gi|330835548|ref|YP_004410276.1| - 4.8e-16 58.5 0.3 1.4e-15 57.1 0.2 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain LuxE PF04443.7 gi|330835548|ref|YP_004410276.1| - 0.0055 15.4 0.0 0.051 12.2 0.0 2.0 2 0 0 2 2 2 1 Acyl-protein synthetase, LuxE DUF35 PF01796.12 gi|330835549|ref|YP_004410277.1| - 2.5e-12 46.8 0.0 6.3e-12 45.5 0.0 1.7 1 1 1 2 2 2 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|330835549|ref|YP_004410277.1| - 1.3e-07 31.3 0.3 1.8e-07 30.8 0.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Thiolase_N PF00108.18 gi|330835550|ref|YP_004410278.1| - 2.5e-11 43.0 0.2 1.2e-08 34.2 0.0 2.2 1 1 1 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|330835550|ref|YP_004410278.1| - 2.2e-07 30.2 0.8 5.4e-06 25.8 0.0 3.1 4 0 0 4 4 4 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|330835550|ref|YP_004410278.1| - 6.4e-05 22.5 4.7 0.00029 20.4 1.7 2.6 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|330835550|ref|YP_004410278.1| - 0.0016 18.0 0.5 0.23 11.1 0.5 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RNA_pol PF00940.14 gi|330835550|ref|YP_004410278.1| - 0.013 14.0 0.2 0.021 13.3 0.1 1.2 1 0 0 1 1 1 0 DNA-dependent RNA polymerase Linker_histone PF00538.14 gi|330835550|ref|YP_004410278.1| - 0.02 14.9 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 linker histone H1 and H5 family Ketoacyl-synt_C PF02801.17 gi|330835550|ref|YP_004410278.1| - 0.093 12.5 1.2 11 5.9 0.0 3.6 4 0 0 4 4 4 0 Beta-ketoacyl synthase, C-terminal domain ECH PF00378.15 gi|330835551|ref|YP_004410279.1| - 3.4e-42 144.2 0.0 3.8e-42 144.1 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family ECH_C PF13766.1 gi|330835551|ref|YP_004410279.1| - 0.0054 16.8 0.0 0.011 15.9 0.0 1.5 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region ECH PF00378.15 gi|330835552|ref|YP_004410280.1| - 4.8e-71 238.7 0.5 5.9e-71 238.4 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Peptidase_S49 PF01343.13 gi|330835552|ref|YP_004410280.1| - 0.0011 18.7 0.1 0.01 15.6 0.0 2.3 2 0 0 2 2 2 1 Peptidase family S49 ECH_C PF13766.1 gi|330835552|ref|YP_004410280.1| - 0.0073 16.4 0.1 0.017 15.2 0.0 1.6 1 0 0 1 1 1 1 2-enoyl-CoA Hydratase C-terminal region AurF PF11583.3 gi|330835553|ref|YP_004410281.1| - 8.6e-06 24.8 0.3 5.9e-05 22.1 0.2 2.1 1 1 0 1 1 1 1 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.12 gi|330835553|ref|YP_004410281.1| - 0.0016 18.7 0.0 0.0073 16.6 0.0 2.0 2 0 0 2 2 2 1 Rubrerythrin PI3K_p85B PF02192.11 gi|330835553|ref|YP_004410281.1| - 0.097 12.1 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 PI3-kinase family, p85-binding domain HpcH_HpaI PF03328.9 gi|330835554|ref|YP_004410282.1| - 7.3e-28 96.9 0.0 4.4e-26 91.1 0.0 2.1 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|330835554|ref|YP_004410282.1| - 2.1e-12 46.5 0.2 1.2e-07 30.9 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold DUF3242 PF11586.3 gi|330835555|ref|YP_004410283.1| - 0.0016 17.9 1.1 0.0025 17.3 0.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3242) TusA PF01206.12 gi|330835556|ref|YP_004410284.1| - 6.4e-16 57.7 0.1 1.6e-15 56.4 0.0 1.7 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|330835556|ref|YP_004410284.1| - 0.02 14.4 0.0 0.044 13.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) PepSY_2 PF13670.1 gi|330835557|ref|YP_004410285.1| - 0.15 11.9 0.1 0.39 10.6 0.1 1.6 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain DrsE PF02635.10 gi|330835558|ref|YP_004410286.1| - 1.4e-05 25.1 0.0 1.5e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Lactonase PF10282.4 gi|330835559|ref|YP_004410287.1| - 8.2e-06 25.1 0.0 0.04 13.0 0.0 2.8 1 1 1 2 2 2 2 Lactonase, 7-bladed beta-propeller DUF1628 PF07790.6 gi|330835559|ref|YP_004410287.1| - 0.048 14.4 0.9 0.13 13.0 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) Cytochrom_D1 PF02239.11 gi|330835559|ref|YP_004410287.1| - 0.072 11.3 0.0 9.3 4.4 0.0 2.4 2 1 0 2 2 2 0 Cytochrome D1 heme domain Tir_receptor_C PF07489.6 gi|330835559|ref|YP_004410287.1| - 0.11 12.2 4.0 0.18 11.5 2.8 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus Shisa PF13908.1 gi|330835559|ref|YP_004410287.1| - 0.13 12.4 0.2 0.2 11.8 0.1 1.3 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator NHL PF01436.16 gi|330835559|ref|YP_004410287.1| - 0.38 10.7 2.1 7.6 6.7 0.2 3.0 2 0 0 2 2 2 0 NHL repeat DUF3439 PF11921.3 gi|330835559|ref|YP_004410287.1| - 7.3 6.3 14.5 0.14 11.8 4.5 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3439) DoxD PF04173.8 gi|330835561|ref|YP_004410289.1| - 1.4e-48 164.7 9.9 1.8e-48 164.3 6.9 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|330835561|ref|YP_004410289.1| - 3.8e-05 24.0 4.1 3.8e-05 24.0 2.8 2.0 2 1 0 2 2 2 1 DoxX TusA PF01206.12 gi|330835562|ref|YP_004410290.1| - 1.6e-19 69.2 0.1 1.9e-19 69.0 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|330835562|ref|YP_004410290.1| - 0.015 14.8 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Sulf_transp PF04143.9 gi|330835563|ref|YP_004410291.1| - 8.3e-15 54.5 27.5 4e-11 42.7 4.5 4.3 4 1 0 4 4 4 2 Sulphur transport Claudin_3 PF06653.6 gi|330835564|ref|YP_004410292.1| - 0.026 14.2 1.0 0.031 14.0 0.7 1.2 1 0 0 1 1 1 0 Tight junction protein, Claudin-like DUF2632 PF10943.3 gi|330835564|ref|YP_004410292.1| - 0.046 13.2 1.6 0.056 12.9 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) DUF2370 PF10176.4 gi|330835564|ref|YP_004410292.1| - 0.052 12.8 0.3 0.052 12.8 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) COX4_pro_2 PF07835.7 gi|330835564|ref|YP_004410292.1| - 2.4 8.2 5.4 0.46 10.4 0.6 2.0 2 0 0 2 2 2 0 Bacterial aa3 type cytochrome c oxidase subunit IV DrsE_2 PF13686.1 gi|330835565|ref|YP_004410293.1| - 2.6e-07 30.5 0.9 0.0046 16.7 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|330835565|ref|YP_004410293.1| - 0.00023 21.1 0.0 0.00027 20.9 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family mIF3 PF14877.1 gi|330835566|ref|YP_004410294.1| - 0.038 13.3 0.0 0.047 13.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial translation initiation factor Aldedh PF00171.17 gi|330835567|ref|YP_004410295.1| - 2e-125 418.7 0.0 2.6e-125 418.3 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|330835567|ref|YP_004410295.1| - 0.0002 20.2 0.0 0.00053 18.8 0.0 1.8 1 1 0 1 1 1 1 Acyl-CoA reductase (LuxC) PDDEXK_1 PF12705.2 gi|330835568|ref|YP_004410296.1| - 9.3e-08 31.7 0.4 6e-07 29.1 0.3 1.7 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|330835568|ref|YP_004410296.1| - 0.0002 21.3 0.0 0.00028 20.8 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|330835568|ref|YP_004410296.1| - 0.03 14.3 0.0 0.13 12.2 0.0 1.9 1 1 0 1 1 1 0 PD-(D/E)XK nuclease superfamily tRNA_anti-like PF12869.2 gi|330835570|ref|YP_004410298.1| - 0.0087 15.5 5.4 0.085 12.3 2.0 2.5 1 1 1 2 2 2 1 tRNA_anti-like DUF3592 PF12158.3 gi|330835570|ref|YP_004410298.1| - 0.022 14.5 0.1 0.022 14.5 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3592) DUF2371 PF10177.4 gi|330835570|ref|YP_004410298.1| - 0.05 13.4 6.2 0.2 11.5 1.0 2.1 1 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Cation_ATPase_C PF00689.16 gi|330835570|ref|YP_004410298.1| - 0.11 12.0 1.9 0.13 11.7 1.3 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF872 PF05915.7 gi|330835570|ref|YP_004410298.1| - 0.43 10.4 6.4 2.2 8.1 1.0 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.3 gi|330835570|ref|YP_004410298.1| - 0.53 10.3 8.6 3 7.9 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) BCLP PF12304.3 gi|330835570|ref|YP_004410298.1| - 2.1 7.7 5.7 0.34 10.2 0.9 1.7 2 0 0 2 2 2 0 Beta-casein like protein DUF4341 PF14241.1 gi|330835570|ref|YP_004410298.1| - 4 7.2 7.4 3.5 7.3 0.9 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4341) DoxA PF07680.6 gi|330835571|ref|YP_004410299.1| - 3.3e-48 162.6 0.8 3.9e-48 162.4 0.6 1.0 1 0 0 1 1 1 1 TQO small subunit DoxA Sarcoglycan_2 PF05510.8 gi|330835571|ref|YP_004410299.1| - 0.13 10.5 0.1 0.22 9.7 0.1 1.3 1 1 0 1 1 1 0 Sarcoglycan alpha/epsilon DoxD PF04173.8 gi|330835572|ref|YP_004410300.1| - 3.4e-65 218.8 1.0 3.8e-65 218.6 0.7 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.7 gi|330835572|ref|YP_004410300.1| - 2.6e-08 34.1 6.9 2.6e-08 34.1 4.8 2.0 2 1 0 2 2 2 1 DoxX Oxidored_molyb PF00174.14 gi|330835573|ref|YP_004410301.1| - 4.2e-41 140.1 0.0 5.2e-41 139.8 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain AA_permease_2 PF13520.1 gi|330835574|ref|YP_004410302.1| - 1.8e-26 92.6 46.4 1.8e-26 92.6 32.2 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.16 gi|330835574|ref|YP_004410302.1| - 4.8e-09 35.0 49.8 5.8e-09 34.8 33.9 1.5 1 1 0 1 1 1 1 Amino acid permease C1_3 PF07649.7 gi|330835575|ref|YP_004410303.1| - 0.026 14.5 0.9 0.048 13.6 0.6 1.5 1 0 0 1 1 1 0 C1-like domain AhpC-TSA PF00578.16 gi|330835576|ref|YP_004410304.1| - 2e-37 127.6 0.2 2.4e-37 127.3 0.1 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|330835576|ref|YP_004410304.1| - 7.8e-30 103.3 0.1 9.2e-30 103.1 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|330835576|ref|YP_004410304.1| - 0.015 15.2 0.0 0.15 11.9 0.0 2.0 1 1 0 1 1 1 0 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.9 gi|330835576|ref|YP_004410304.1| - 0.016 14.8 0.3 0.041 13.5 0.2 1.8 1 1 0 1 1 1 0 SCO1/SenC Glyco_tranf_2_3 PF13641.1 gi|330835577|ref|YP_004410305.1| - 4.1e-26 92.1 0.0 5.8e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|330835577|ref|YP_004410305.1| - 4.1e-18 65.6 0.0 9.7e-18 64.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|330835577|ref|YP_004410305.1| - 2.7e-13 49.5 0.0 5.4e-13 48.5 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|330835577|ref|YP_004410305.1| - 5.8e-12 45.7 0.7 1.7e-11 44.2 0.5 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|330835577|ref|YP_004410305.1| - 0.022 13.8 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Voltage_CLC PF00654.15 gi|330835578|ref|YP_004410306.1| - 2.8e-86 289.7 31.6 2.8e-86 289.7 21.9 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.23 gi|330835578|ref|YP_004410306.1| - 1.2e-20 72.9 0.1 4.5e-09 35.9 0.0 2.5 2 0 0 2 2 2 2 CBS domain GAF_2 PF13185.1 gi|330835578|ref|YP_004410306.1| - 0.0098 16.3 0.7 3.4 8.1 0.0 3.0 2 1 0 3 3 3 2 GAF domain Rhodanese PF00581.15 gi|330835579|ref|YP_004410307.1| - 6.8e-29 100.5 0.0 1.2e-20 73.9 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF442 PF04273.8 gi|330835579|ref|YP_004410307.1| - 0.057 13.2 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 Putative phosphatase (DUF442) DUF87 PF01935.12 gi|330835580|ref|YP_004410308.1| - 1.3e-15 57.8 0.1 3e-15 56.6 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330835580|ref|YP_004410308.1| - 4.2e-15 55.9 0.0 9.6e-07 28.5 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|330835580|ref|YP_004410308.1| - 1.3e-08 33.6 0.1 0.0011 17.3 0.0 2.1 1 1 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|330835580|ref|YP_004410308.1| - 3e-06 26.8 0.0 4.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) Arch_ATPase PF01637.13 gi|330835580|ref|YP_004410308.1| - 8.1e-05 22.4 0.1 0.00015 21.5 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_22 PF13401.1 gi|330835580|ref|YP_004410308.1| - 0.0007 19.7 0.0 0.0015 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330835580|ref|YP_004410308.1| - 0.0011 19.8 0.1 0.0019 18.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|330835580|ref|YP_004410308.1| - 0.0012 17.6 0.0 0.0068 15.0 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|330835580|ref|YP_004410308.1| - 0.0083 15.6 0.0 0.95 8.8 0.0 2.1 1 1 0 1 1 1 1 FtsK/SpoIIIE family ArgK PF03308.11 gi|330835580|ref|YP_004410308.1| - 0.017 13.9 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_14 PF13173.1 gi|330835580|ref|YP_004410308.1| - 0.017 15.0 0.1 0.034 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|330835580|ref|YP_004410308.1| - 0.02 14.6 0.1 0.061 13.0 0.0 1.9 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|330835580|ref|YP_004410308.1| - 0.028 13.5 0.0 0.047 12.7 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|330835580|ref|YP_004410308.1| - 0.038 14.1 0.0 0.17 12.1 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|330835580|ref|YP_004410308.1| - 0.078 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_18 PF13238.1 gi|330835580|ref|YP_004410308.1| - 0.079 13.2 0.2 0.15 12.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain Imm14 PF15428.1 gi|330835580|ref|YP_004410308.1| - 0.08 13.3 0.1 3.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Immunity protein 14 TusA PF01206.12 gi|330835581|ref|YP_004410309.1| - 8e-16 57.4 0.0 8.8e-16 57.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.9 gi|330835582|ref|YP_004410310.1| - 1.9e-13 50.7 0.0 5.7e-13 49.2 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|330835582|ref|YP_004410310.1| - 4.2e-05 23.3 0.3 0.17 11.6 0.0 2.5 1 1 1 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|330835582|ref|YP_004410310.1| - 0.00021 20.0 0.0 0.00049 18.8 0.0 1.6 2 0 0 2 2 2 1 Tryptophan halogenase DAO PF01266.19 gi|330835582|ref|YP_004410310.1| - 0.0005 19.0 0.0 0.033 13.1 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|330835582|ref|YP_004410310.1| - 0.00064 18.6 0.1 0.68 8.7 0.3 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|330835582|ref|YP_004410310.1| - 0.021 14.8 0.0 0.058 13.4 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|330835582|ref|YP_004410310.1| - 0.16 11.9 1.0 1.3 9.0 0.1 2.5 2 1 1 3 3 3 0 TrkA-N domain Pyr_redox PF00070.22 gi|330835582|ref|YP_004410310.1| - 0.66 10.4 4.6 46 4.4 0.1 3.8 4 0 0 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase DrsE PF02635.10 gi|330835583|ref|YP_004410311.1| - 5.1e-09 36.2 0.0 5.8e-09 36.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|330835583|ref|YP_004410311.1| - 3.8e-06 26.7 0.1 0.00058 19.6 0.1 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family SidE PF12252.3 gi|330835583|ref|YP_004410311.1| - 0.021 12.1 0.0 0.022 12.1 0.0 1.0 1 0 0 1 1 1 0 Dot/Icm substrate protein DUF1641 PF07849.6 gi|330835584|ref|YP_004410312.1| - 2.2e-13 49.5 2.3 2.4e-13 49.4 0.1 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) ADH_zinc_N_2 PF13602.1 gi|330835584|ref|YP_004410312.1| - 3.4e-06 27.9 0.0 1.5 9.7 0.0 3.3 2 1 1 3 3 3 2 Zinc-binding dehydrogenase SRP_SPB PF02978.14 gi|330835584|ref|YP_004410312.1| - 0.00024 21.2 1.1 0.16 12.2 0.0 3.8 3 2 1 4 4 4 1 Signal peptide binding domain AbbA_antirepres PF14156.1 gi|330835584|ref|YP_004410312.1| - 0.0029 17.2 2.8 0.91 9.2 0.1 3.5 3 0 0 3 3 3 1 Antirepressor AbbA GUCT PF08152.7 gi|330835584|ref|YP_004410312.1| - 0.004 17.0 0.1 8.4 6.4 0.0 3.4 3 0 0 3 3 3 1 GUCT (NUC152) domain CK2S PF15011.1 gi|330835584|ref|YP_004410312.1| - 0.02 14.6 4.2 0.061 13.1 0.5 2.7 1 1 2 3 3 3 0 Casein Kinase 2 substrate Sds3 PF08598.6 gi|330835584|ref|YP_004410312.1| - 0.021 14.3 0.0 6.2 6.2 0.0 2.6 2 1 1 3 3 3 0 Sds3-like GMAP PF06540.6 gi|330835584|ref|YP_004410312.1| - 0.056 13.1 1.5 6.4 6.5 0.0 3.7 3 1 1 4 4 4 0 Galanin message associated peptide (GMAP) Hat1_N PF10394.4 gi|330835584|ref|YP_004410312.1| - 0.056 13.5 0.0 20 5.2 0.0 3.0 2 1 1 3 3 3 0 Histone acetyl transferase HAT1 N-terminus HsdM_N PF12161.3 gi|330835584|ref|YP_004410312.1| - 0.13 12.6 2.3 0.6 10.5 0.1 2.6 2 1 0 3 3 3 0 HsdM N-terminal domain DUF2777 PF10949.3 gi|330835584|ref|YP_004410312.1| - 0.27 10.8 1.6 17 5.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2777) ABC_tran PF00005.22 gi|330835585|ref|YP_004410313.1| - 1.1e-22 80.8 0.0 1.8e-22 80.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|330835585|ref|YP_004410313.1| - 1.6e-11 44.7 0.0 1.5e-07 31.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|330835585|ref|YP_004410313.1| - 0.00088 18.5 0.1 0.073 12.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|330835585|ref|YP_004410313.1| - 0.0028 17.7 0.0 0.0063 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|330835585|ref|YP_004410313.1| - 0.004 16.6 0.2 0.0068 15.9 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|330835585|ref|YP_004410313.1| - 0.013 14.5 0.1 3.3 6.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|330835585|ref|YP_004410313.1| - 0.015 14.8 0.0 0.039 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|330835585|ref|YP_004410313.1| - 0.015 13.7 0.2 0.17 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|330835585|ref|YP_004410313.1| - 0.016 14.6 0.0 0.1 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF87 PF01935.12 gi|330835585|ref|YP_004410313.1| - 0.025 14.4 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|330835585|ref|YP_004410313.1| - 0.066 13.1 0.0 0.57 10.1 0.0 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC2_membrane PF01061.19 gi|330835586|ref|YP_004410314.1| - 1.9e-07 30.4 21.8 1.9e-07 30.4 15.1 1.6 1 1 0 1 1 1 1 ABC-2 type transporter Picorna_P3A PF06363.6 gi|330835586|ref|YP_004410314.1| - 1.2 9.1 4.9 12 5.9 0.6 2.5 2 0 0 2 2 2 0 Picornaviridae P3A protein ABC2_membrane_3 PF12698.2 gi|330835587|ref|YP_004410315.1| - 0.014 14.4 9.5 0.025 13.6 6.6 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein SNARE_assoc PF09335.6 gi|330835587|ref|YP_004410315.1| - 0.043 14.0 6.6 0.24 11.5 0.5 2.1 1 1 1 2 2 2 0 SNARE associated Golgi protein PCEMA1 PF07418.6 gi|330835587|ref|YP_004410315.1| - 0.12 11.7 0.0 0.12 11.7 0.0 2.2 3 0 0 3 3 3 0 Acidic phosphoprotein precursor PCEMA1 DUF2061 PF09834.4 gi|330835587|ref|YP_004410315.1| - 0.22 11.7 1.9 0.6 10.3 1.3 1.7 1 0 0 1 1 1 0 Predicted membrane protein (DUF2061) CAAD PF14159.1 gi|330835587|ref|YP_004410315.1| - 1.2 8.8 3.8 3.1 7.5 2.4 1.9 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF3985 PF13153.1 gi|330835587|ref|YP_004410315.1| - 7.1 6.5 6.8 13 5.6 4.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3985) UPF0126 PF03458.8 gi|330835588|ref|YP_004410316.1| - 0.037 13.6 0.1 0.074 12.6 0.0 1.5 1 1 0 1 1 1 0 UPF0126 domain DUF520 PF04461.8 gi|330835588|ref|YP_004410316.1| - 0.11 12.3 0.8 0.16 11.8 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF520) Peptidase_M32 PF02074.10 gi|330835589|ref|YP_004410317.1| - 3.1e-152 507.7 0.3 3.4e-152 507.5 0.2 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF711 PF05167.7 gi|330835590|ref|YP_004410318.1| - 2.3e-128 428.3 0.4 2.6e-128 428.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) ACT_6 PF13740.1 gi|330835591|ref|YP_004410319.1| - 1.1e-17 63.4 0.4 1.3e-17 63.2 0.3 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|330835591|ref|YP_004410319.1| - 5.3e-11 41.7 0.6 6.5e-11 41.4 0.4 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|330835591|ref|YP_004410319.1| - 1.3e-06 27.7 0.9 2.2e-06 27.0 0.6 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|330835591|ref|YP_004410319.1| - 0.00033 20.9 0.6 0.00043 20.5 0.4 1.2 1 0 0 1 1 1 1 ACT domain Abhydrolase_5 PF12695.2 gi|330835592|ref|YP_004410320.1| - 1.4e-08 34.5 0.0 1.4e-07 31.3 0.0 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|330835592|ref|YP_004410320.1| - 7.4e-07 28.8 0.3 9.8e-05 21.8 0.0 2.7 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.16 gi|330835592|ref|YP_004410320.1| - 7.9e-06 25.2 0.0 1.3e-05 24.4 0.0 1.4 1 1 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|330835592|ref|YP_004410320.1| - 3.5e-05 23.7 0.1 0.00053 19.9 0.1 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.8 gi|330835592|ref|YP_004410320.1| - 0.00033 20.1 0.0 0.0008 18.9 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Esterase PF00756.15 gi|330835592|ref|YP_004410320.1| - 0.1 12.0 0.1 0.15 11.4 0.0 1.2 1 0 0 1 1 1 0 Putative esterase BAAT_C PF08840.6 gi|330835592|ref|YP_004410320.1| - 0.15 11.7 0.1 3.2 7.3 0.0 2.0 1 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal EamA PF00892.15 gi|330835593|ref|YP_004410321.1| - 4.5e-32 110.7 32.5 3.8e-20 72.1 9.5 2.4 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|330835593|ref|YP_004410321.1| - 2.9e-07 30.6 24.1 5.2e-05 23.4 3.8 2.8 1 1 0 2 2 2 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|330835593|ref|YP_004410321.1| - 0.0003 20.4 18.5 0.0031 17.1 0.8 3.1 2 2 0 2 2 2 2 Triose-phosphate Transporter family Fer4_7 PF12838.2 gi|330835594|ref|YP_004410322.1| - 8.3e-09 35.6 18.1 8.1e-05 22.9 2.2 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835594|ref|YP_004410322.1| - 1.3e-07 31.2 6.6 1.7e-07 30.9 4.6 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|330835594|ref|YP_004410322.1| - 4.5e-07 29.6 1.6 5.2e-07 29.4 1.1 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835594|ref|YP_004410322.1| - 1.7e-05 24.5 1.9 0.07 13.0 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|330835594|ref|YP_004410322.1| - 3.7e-05 23.9 7.3 9e-05 22.6 5.2 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835594|ref|YP_004410322.1| - 7e-05 22.5 10.3 0.025 14.4 1.9 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835594|ref|YP_004410322.1| - 0.00038 20.4 1.6 0.28 11.2 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835594|ref|YP_004410322.1| - 0.0011 18.7 12.2 0.02 14.8 2.0 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|330835594|ref|YP_004410322.1| - 0.0013 19.3 4.5 0.67 10.7 1.0 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|330835594|ref|YP_004410322.1| - 0.0037 16.7 14.0 0.042 13.4 1.3 3.8 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330835594|ref|YP_004410322.1| - 0.0095 16.4 13.7 0.067 13.7 1.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain VSP PF03302.8 gi|330835594|ref|YP_004410322.1| - 0.011 14.3 0.4 0.011 14.3 0.2 1.0 1 0 0 1 1 1 0 Giardia variant-specific surface protein DUF4489 PF14879.1 gi|330835594|ref|YP_004410322.1| - 0.022 14.4 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4489) Fer4_20 PF14691.1 gi|330835594|ref|YP_004410322.1| - 0.055 13.0 8.0 0.18 11.4 1.5 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.1 gi|330835594|ref|YP_004410322.1| - 0.066 13.5 6.8 2.4 8.5 0.2 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|330835594|ref|YP_004410322.1| - 0.44 11.0 12.2 1.5 9.3 1.6 2.8 2 1 0 2 2 2 0 4Fe-4S binding domain GCC2_GCC3 PF07699.8 gi|330835594|ref|YP_004410322.1| - 0.45 10.1 5.0 1.1 8.9 2.7 2.1 1 1 0 1 1 1 0 GCC2 and GCC3 Fer4_15 PF13459.1 gi|330835594|ref|YP_004410322.1| - 6.2 7.4 7.8 40 4.8 5.4 2.0 1 1 0 1 1 1 0 4Fe-4S single cluster domain DAO PF01266.19 gi|330835595|ref|YP_004410323.1| - 3.5e-15 55.7 3.8 6.1e-07 28.6 1.1 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|330835595|ref|YP_004410323.1| - 3.3e-13 49.4 0.0 5.9e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|330835595|ref|YP_004410323.1| - 2.9e-11 42.8 0.2 5.4e-11 41.9 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|330835595|ref|YP_004410323.1| - 6.4e-08 31.4 2.2 2.6e-06 26.1 0.5 2.9 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|330835595|ref|YP_004410323.1| - 3.4e-06 26.9 1.0 1.2e-05 25.2 0.5 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|330835595|ref|YP_004410323.1| - 4.5e-06 25.9 0.7 0.0013 17.8 0.5 2.3 2 0 0 2 2 2 2 FAD binding domain GIDA PF01134.17 gi|330835595|ref|YP_004410323.1| - 7.5e-06 25.0 0.4 7.5e-06 25.0 0.3 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.9 gi|330835595|ref|YP_004410323.1| - 8.1e-06 25.8 0.4 2.8e-05 24.0 0.2 2.1 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|330835595|ref|YP_004410323.1| - 3.1e-05 23.1 0.5 0.0001 21.5 0.2 1.9 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|330835595|ref|YP_004410323.1| - 7e-05 21.9 0.1 0.00019 20.4 0.1 1.7 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|330835595|ref|YP_004410323.1| - 0.0016 18.5 0.2 0.0029 17.6 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|330835595|ref|YP_004410323.1| - 0.0032 17.8 3.4 0.097 13.0 0.6 3.4 3 2 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.16 gi|330835595|ref|YP_004410323.1| - 0.028 14.0 0.7 0.41 10.2 0.3 2.6 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain XisI PF08869.6 gi|330835595|ref|YP_004410323.1| - 0.052 13.6 0.0 22 5.2 0.0 3.3 3 0 0 3 3 3 0 XisI protein NAD_binding_7 PF13241.1 gi|330835595|ref|YP_004410323.1| - 0.095 12.9 0.0 6.6 7.0 0.0 2.5 2 0 0 2 2 2 0 Putative NAD(P)-binding Trp_halogenase PF04820.9 gi|330835595|ref|YP_004410323.1| - 0.1 11.2 0.3 7.8 5.0 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase ETF_alpha PF00766.14 gi|330835596|ref|YP_004410324.1| - 1.6e-32 110.9 0.3 6.3e-32 109.0 0.2 2.1 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|330835596|ref|YP_004410324.1| - 3.2e-13 49.7 0.0 7.6e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.16 gi|330835597|ref|YP_004410325.1| - 8.6e-28 97.1 0.2 1.2e-27 96.6 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Hydrolase_like PF13242.1 gi|330835598|ref|YP_004410326.1| - 0.052 13.2 0.1 0.059 13.0 0.1 1.1 1 0 0 1 1 1 0 HAD-hyrolase-like PIN PF01850.16 gi|330835599|ref|YP_004410327.1| - 1.6e-09 38.1 0.7 1.9e-09 37.8 0.5 1.1 1 0 0 1 1 1 1 PIN domain DNA_pol_A_exo1 PF01612.15 gi|330835599|ref|YP_004410327.1| - 0.0011 18.5 0.1 0.0014 18.1 0.1 1.2 1 0 0 1 1 1 1 3'-5' exonuclease DUF4319 PF14203.1 gi|330835599|ref|YP_004410327.1| - 0.054 13.0 1.0 6.4 6.4 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4319) adh_short_C2 PF13561.1 gi|330835602|ref|YP_004410330.1| - 0.046 13.4 0.3 0.056 13.2 0.2 1.1 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase DUF1827 PF08860.5 gi|330835602|ref|YP_004410330.1| - 0.12 12.5 0.1 0.2 11.7 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) Tox-WTIP PF15654.1 gi|330835603|ref|YP_004410331.1| - 0.041 13.5 0.2 0.062 12.9 0.2 1.2 1 0 0 1 1 1 0 Toxin with a conserved tryptophan and TIP tripeptide motif PMP1_2 PF08114.6 gi|330835603|ref|YP_004410331.1| - 6 6.4 10.6 15 5.1 0.8 3.1 2 1 1 3 3 3 0 ATPase proteolipid family DUF1404 PF07185.6 gi|330835604|ref|YP_004410332.1| - 2.4e-48 163.8 13.1 2.7e-48 163.7 9.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) DUF1404 PF07185.6 gi|330835605|ref|YP_004410333.1| - 1.6e-39 135.1 15.6 1.9e-39 134.9 10.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.5 gi|330835605|ref|YP_004410333.1| - 0.69 8.7 12.4 0.04 12.8 2.8 2.4 1 1 1 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) COX1 PF00115.15 gi|330835606|ref|YP_004410334.1| - 5e-127 424.2 56.7 5e-127 424.2 39.3 2.9 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|330835606|ref|YP_004410334.1| - 5.5e-17 62.0 18.1 5.5e-17 62.0 12.5 2.6 2 0 0 2 2 2 1 Cytochrome c oxidase subunit III SoxE PF06525.6 gi|330835607|ref|YP_004410335.1| - 4.6e-74 247.9 10.3 5.3e-74 247.7 7.1 1.0 1 0 0 1 1 1 1 Sulfocyanin (SoxE) Cu-oxidase_2 PF07731.9 gi|330835607|ref|YP_004410335.1| - 0.0057 16.1 0.1 0.068 12.6 0.0 2.1 2 1 0 2 2 2 1 Multicopper oxidase DUF3112 PF11309.3 gi|330835607|ref|YP_004410335.1| - 0.026 14.3 0.6 0.029 14.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) DUF1628 PF07790.6 gi|330835607|ref|YP_004410335.1| - 0.46 11.2 7.4 0.83 10.4 5.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) Rieske PF00355.21 gi|330835608|ref|YP_004410336.1| - 6.6e-16 57.6 0.1 1.1e-15 56.9 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|330835608|ref|YP_004410336.1| - 0.13 12.3 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|330835609|ref|YP_004410337.1| - 9.4e-33 113.3 7.6 9.4e-33 113.3 5.3 2.9 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|330835609|ref|YP_004410337.1| - 0.00024 21.2 2.5 0.00024 21.2 1.7 3.8 3 2 1 4 4 4 1 Cytochrome b(C-terminal)/b6/petD Cytochrom_B_N PF00033.14 gi|330835609|ref|YP_004410337.1| - 0.00037 19.9 22.1 0.00037 19.9 15.3 2.9 3 2 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB COX2 PF00116.15 gi|330835610|ref|YP_004410338.1| - 8.5e-22 77.2 0.7 2e-20 72.7 0.5 2.1 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|330835610|ref|YP_004410338.1| - 7.1e-06 25.8 0.0 8.8e-06 25.5 0.0 1.3 1 1 0 1 1 1 1 Cupredoxin-like domain DUF4407 PF14362.1 gi|330835611|ref|YP_004410339.1| - 0.0051 15.8 0.2 0.0051 15.8 0.2 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4407) Caa3_CtaG PF09678.5 gi|330835611|ref|YP_004410339.1| - 0.0067 15.3 1.2 0.0067 15.3 0.9 1.8 1 1 1 2 2 2 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) SirB PF04247.7 gi|330835611|ref|YP_004410339.1| - 0.0077 15.9 0.8 0.0077 15.9 0.5 1.9 2 1 0 2 2 2 1 Invasion gene expression up-regulator, SirB ATP-synt_8 PF00895.15 gi|330835611|ref|YP_004410339.1| - 0.019 15.1 9.7 1.5 9.0 2.4 3.2 2 1 1 3 3 3 0 ATP synthase protein 8 Bac_export_2 PF01312.14 gi|330835611|ref|YP_004410339.1| - 0.025 13.4 0.3 0.025 13.4 0.2 1.9 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family DUF389 PF04087.9 gi|330835611|ref|YP_004410339.1| - 0.038 13.9 1.6 0.052 13.4 0.3 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF389) DUF1673 PF07895.6 gi|330835611|ref|YP_004410339.1| - 0.38 10.2 11.9 0.57 9.6 8.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Tic20 PF09685.5 gi|330835611|ref|YP_004410339.1| - 0.71 9.8 12.4 0.097 12.6 2.9 2.1 2 0 0 2 2 2 0 Tic20-like protein DUF4064 PF13273.1 gi|330835611|ref|YP_004410339.1| - 1.5 8.9 13.3 2.4e+02 1.9 9.2 2.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) GPI2 PF06432.6 gi|330835611|ref|YP_004410339.1| - 1.8 7.8 9.5 0.21 10.8 3.6 1.6 1 1 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase Cytochrom_B_C PF00032.12 gi|330835611|ref|YP_004410339.1| - 6.5 7.0 11.3 5.3 7.3 2.8 2.7 1 1 2 3 3 3 0 Cytochrome b(C-terminal)/b6/petD DUF1516 PF07457.6 gi|330835611|ref|YP_004410339.1| - 9.7 6.3 10.8 1.2 9.2 2.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1516) SPW PF03779.9 gi|330835612|ref|YP_004410340.1| - 0.061 12.7 2.8 3.9 6.9 0.2 2.8 2 0 0 2 2 2 0 SPW repeat Tetraspannin PF00335.15 gi|330835612|ref|YP_004410340.1| - 4.4 6.5 10.8 0.076 12.2 2.2 1.9 2 1 0 2 2 2 0 Tetraspanin family DUF4131 PF13567.1 gi|330835612|ref|YP_004410340.1| - 5.6 6.3 9.7 8 5.8 1.4 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) DUF2937 PF11157.3 gi|330835612|ref|YP_004410340.1| - 6.1 6.1 5.9 5.8 6.2 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) EamA PF00892.15 gi|330835613|ref|YP_004410341.1| - 7.2e-21 74.5 19.2 5e-12 45.9 1.8 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|330835613|ref|YP_004410341.1| - 0.0051 17.0 3.4 0.0051 17.0 2.3 2.8 1 1 0 2 2 2 2 Multidrug resistance efflux transporter ATP_synt_I PF03899.10 gi|330835613|ref|YP_004410341.1| - 7.9 6.7 16.4 3.1 8.0 0.8 3.1 2 1 1 3 3 3 0 ATP synthase I chain MFS_1 PF07690.11 gi|330835614|ref|YP_004410342.1| - 9.8e-49 165.9 40.9 1.9e-48 165.0 28.3 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|330835614|ref|YP_004410342.1| - 2.2e-15 56.1 12.6 2.2e-15 56.1 8.7 3.0 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|330835614|ref|YP_004410342.1| - 3.2e-05 22.5 5.2 3.2e-05 22.5 3.6 3.3 1 1 1 3 3 3 2 MFS/sugar transport protein Peptidase_M50 PF02163.17 gi|330835614|ref|YP_004410342.1| - 6.2 5.7 9.2 1.1 8.1 0.6 2.7 2 1 0 2 2 2 0 Peptidase family M50 TPP_enzyme_C PF02775.16 gi|330835616|ref|YP_004410344.1| - 7.4e-22 77.5 0.1 1.1e-21 77.0 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.1 gi|330835616|ref|YP_004410344.1| - 0.011 14.6 0.0 0.024 13.5 0.0 1.4 1 1 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|330835616|ref|YP_004410344.1| - 0.014 14.1 0.2 0.019 13.7 0.2 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component CGGC PF08821.6 gi|330835616|ref|YP_004410344.1| - 0.13 12.2 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 CGGC domain POR_N PF01855.14 gi|330835617|ref|YP_004410345.1| - 4.4e-67 225.9 0.6 6e-67 225.5 0.4 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|330835617|ref|YP_004410345.1| - 2.8e-08 33.7 0.0 5.9e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|330835617|ref|YP_004410345.1| - 0.0013 18.2 0.2 0.0045 16.4 0.1 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHOCT PF09851.4 gi|330835617|ref|YP_004410345.1| - 0.035 13.5 1.1 0.16 11.4 0.1 2.3 2 0 0 2 2 2 0 Short C-terminal domain Fer4 PF00037.22 gi|330835618|ref|YP_004410346.1| - 3.4e-12 45.4 14.7 1.3e-08 34.1 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835618|ref|YP_004410346.1| - 4.2e-11 42.5 9.7 7.4e-11 41.7 6.7 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835618|ref|YP_004410346.1| - 6.1e-10 38.7 22.2 2.2e-07 30.5 8.3 1.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|330835618|ref|YP_004410346.1| - 2.3e-09 37.4 12.8 3.4e-09 36.9 8.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835618|ref|YP_004410346.1| - 6.3e-09 35.3 12.9 7.4e-06 25.6 2.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835618|ref|YP_004410346.1| - 1.4e-08 34.8 21.9 2.7e-07 30.7 8.9 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835618|ref|YP_004410346.1| - 9.8e-08 32.6 9.5 0.00012 22.7 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|330835618|ref|YP_004410346.1| - 1e-07 31.4 13.1 0.00075 19.2 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330835618|ref|YP_004410346.1| - 5e-05 23.2 14.0 0.0032 17.6 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835618|ref|YP_004410346.1| - 9.9e-05 22.2 12.4 0.0013 18.7 9.1 1.9 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|330835618|ref|YP_004410346.1| - 0.00012 22.3 13.6 0.025 14.9 1.1 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330835618|ref|YP_004410346.1| - 0.001 19.4 19.2 0.11 13.1 5.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330835618|ref|YP_004410346.1| - 0.001 19.3 10.9 0.11 12.8 0.8 2.1 1 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|330835618|ref|YP_004410346.1| - 0.0026 18.1 11.0 0.22 11.9 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|330835618|ref|YP_004410346.1| - 0.02 15.4 11.6 0.68 10.5 2.7 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain POR PF01558.13 gi|330835619|ref|YP_004410347.1| - 3.2e-28 98.8 0.0 3.6e-28 98.6 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_11 PF13247.1 gi|330835620|ref|YP_004410348.1| - 1.5e-24 85.7 8.5 1.5e-24 85.7 5.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|330835620|ref|YP_004410348.1| - 2.2e-16 58.7 30.6 6.8e-09 34.9 1.2 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835620|ref|YP_004410348.1| - 4.8e-14 52.3 21.7 2.9e-08 33.8 4.3 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835620|ref|YP_004410348.1| - 1.7e-13 49.8 31.8 3.1e-06 26.8 0.8 4.4 4 1 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330835620|ref|YP_004410348.1| - 3.3e-13 49.8 27.1 3.9e-07 30.3 6.7 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835620|ref|YP_004410348.1| - 2.2e-12 46.0 26.9 1.8e-06 27.5 1.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|330835620|ref|YP_004410348.1| - 1.4e-09 37.6 30.6 8.8e-06 25.4 6.9 3.2 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835620|ref|YP_004410348.1| - 3.4e-08 34.1 21.6 0.13 13.0 2.2 4.3 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|330835620|ref|YP_004410348.1| - 4.2e-08 32.8 34.3 0.00021 21.3 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835620|ref|YP_004410348.1| - 6.1e-07 29.2 24.4 0.00011 22.0 6.7 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|330835620|ref|YP_004410348.1| - 7e-07 29.3 42.2 0.0014 19.0 1.8 4.2 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835620|ref|YP_004410348.1| - 6.7e-05 22.8 26.3 0.017 15.1 6.1 3.0 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|330835620|ref|YP_004410348.1| - 0.0006 20.3 21.3 0.032 14.8 2.7 3.6 2 2 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|330835620|ref|YP_004410348.1| - 0.014 15.8 2.4 0.014 15.8 1.7 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|330835620|ref|YP_004410348.1| - 0.091 13.1 30.2 3.4 8.0 2.3 4.3 1 1 3 4 4 4 0 4Fe-4S dicluster domain DmsC PF04976.7 gi|330835620|ref|YP_004410348.1| - 0.46 9.6 19.1 0.67 9.1 7.7 2.5 1 1 1 2 2 2 0 DMSO reductase anchor subunit (DmsC) Fer4_18 PF13746.1 gi|330835620|ref|YP_004410348.1| - 6.9 7.1 26.9 0.37 11.2 0.6 4.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain SRI PF08236.6 gi|330835621|ref|YP_004410349.1| - 0.058 13.3 0.0 0.078 12.9 0.0 1.3 1 1 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain Na_Ca_ex PF01699.19 gi|330835622|ref|YP_004410350.1| - 4.2e-08 32.8 32.2 2.3e-06 27.2 8.0 2.4 2 1 0 2 2 2 2 Sodium/calcium exchanger protein HTH_45 PF14947.1 gi|330835623|ref|YP_004410351.1| - 2.5e-17 62.4 1.7 3e-16 58.9 0.6 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix Transposase_22 PF02994.9 gi|330835623|ref|YP_004410351.1| - 0.014 13.9 0.7 0.018 13.5 0.5 1.1 1 0 0 1 1 1 0 L1 transposable element HEAT PF02985.17 gi|330835624|ref|YP_004410352.1| - 1.6e-07 30.7 0.0 0.0054 16.7 0.0 2.1 2 0 0 2 2 2 2 HEAT repeat HEAT_2 PF13646.1 gi|330835624|ref|YP_004410352.1| - 1.9e-07 31.2 0.1 2e-07 31.1 0.1 1.0 1 0 0 1 1 1 1 HEAT repeats HEAT_PBS PF03130.11 gi|330835624|ref|YP_004410352.1| - 0.00012 22.2 0.1 0.00029 21.0 0.0 1.6 2 0 0 2 2 2 1 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|330835624|ref|YP_004410352.1| - 0.05 14.0 0.2 0.13 12.7 0.2 1.6 1 1 1 2 2 2 0 HEAT-like repeat FAD_binding_5 PF00941.16 gi|330835626|ref|YP_004410354.1| - 5.2e-37 126.9 0.0 7.3e-37 126.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.12 gi|330835626|ref|YP_004410354.1| - 9.8e-23 80.0 0.0 1.7e-22 79.3 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.15 gi|330835627|ref|YP_004410355.1| - 5.7e-30 103.0 0.1 5.7e-30 103.0 0.1 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.22 gi|330835627|ref|YP_004410355.1| - 2.2e-05 24.1 0.4 2.2e-05 24.1 0.3 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|330835627|ref|YP_004410355.1| - 0.00014 21.6 1.4 0.00014 21.6 1.0 1.6 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.13 gi|330835628|ref|YP_004410356.1| - 1.4e-134 449.4 0.1 1.8e-134 449.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330835628|ref|YP_004410356.1| - 6.2e-25 87.4 0.0 1.5e-24 86.2 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Rubrerythrin PF02915.12 gi|330835630|ref|YP_004410358.1| - 7.1e-24 84.6 0.9 9e-24 84.3 0.6 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|330835630|ref|YP_004410358.1| - 3e-09 36.7 0.5 0.00019 21.1 0.0 2.1 1 1 1 2 2 2 2 Ferritin-like domain PSD4 PF07631.6 gi|330835630|ref|YP_004410358.1| - 0.029 14.7 0.0 5.6 7.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1592) CCG PF02754.11 gi|330835631|ref|YP_004410359.1| - 5.1e-16 58.4 2.8 2.9e-11 43.2 0.0 2.7 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|330835631|ref|YP_004410359.1| - 0.011 15.7 0.0 0.023 14.6 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF3501 PF12007.3 gi|330835632|ref|YP_004410360.1| - 1.2e-52 178.3 4.4 1.4e-52 178.2 3.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) 5-FTHF_cyc-lig PF01812.15 gi|330835632|ref|YP_004410360.1| - 0.11 12.2 0.1 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 5-formyltetrahydrofolate cyclo-ligase family Abhydrolase_3 PF07859.8 gi|330835633|ref|YP_004410361.1| - 5.7e-68 228.6 0.0 7e-68 228.3 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold DUF2424 PF10340.4 gi|330835633|ref|YP_004410361.1| - 2.5e-11 42.8 0.0 3e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Abhydrolase_5 PF12695.2 gi|330835633|ref|YP_004410361.1| - 6.7e-08 32.3 0.0 9.1e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|330835633|ref|YP_004410361.1| - 7.7e-05 22.6 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|330835633|ref|YP_004410361.1| - 0.00023 20.4 0.0 0.00046 19.4 0.0 1.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.23 gi|330835633|ref|YP_004410361.1| - 0.00046 19.0 0.0 0.0071 15.1 0.0 2.0 2 0 0 2 2 2 1 Carboxylesterase family DLH PF01738.13 gi|330835633|ref|YP_004410361.1| - 0.003 16.8 0.0 0.32 10.2 0.0 2.3 2 0 0 2 2 2 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|330835633|ref|YP_004410361.1| - 0.046 12.2 0.0 0.26 9.7 0.0 1.9 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) GHMP_kinases_C PF08544.8 gi|330835633|ref|YP_004410361.1| - 0.068 13.3 0.0 0.36 11.0 0.0 2.1 2 0 0 2 2 2 0 GHMP kinases C terminal Abhydrolase_1 PF00561.15 gi|330835633|ref|YP_004410361.1| - 0.069 12.6 0.1 0.38 10.2 0.1 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Glycos_transf_1 PF00534.15 gi|330835634|ref|YP_004410362.1| - 2.7e-28 98.5 0.0 6.2e-28 97.3 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330835634|ref|YP_004410362.1| - 3.7e-15 56.2 0.0 5.7e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|330835634|ref|YP_004410362.1| - 1.2e-11 44.6 0.1 1.7e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|330835634|ref|YP_004410362.1| - 0.00047 20.3 0.0 0.00078 19.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|330835634|ref|YP_004410362.1| - 0.00057 20.0 0.0 0.001 19.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1404 PF07185.6 gi|330835635|ref|YP_004410363.1| - 4.8e-50 169.4 17.1 5.7e-50 169.1 11.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Cytochrom_B_N_2 PF13631.1 gi|330835636|ref|YP_004410364.1| - 3.6e-56 189.5 5.7 3.6e-56 189.5 3.9 3.9 4 1 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB COX1 PF00115.15 gi|330835637|ref|YP_004410365.1| - 1.8e-89 300.4 53.1 2.2e-89 300.1 36.8 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.15 gi|330835638|ref|YP_004410366.1| - 0.00026 20.7 0.0 0.00037 20.3 0.0 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Rieske PF00355.21 gi|330835639|ref|YP_004410367.1| - 1.2e-12 47.2 0.4 2.6e-12 46.1 0.2 1.5 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain EGF_alliinase PF04863.8 gi|330835639|ref|YP_004410367.1| - 0.098 12.6 0.2 0.31 11.0 0.2 1.8 1 0 0 1 1 1 0 Alliinase EGF-like domain 7TMR-DISM_7TM PF07695.6 gi|330835641|ref|YP_004410369.1| - 0.014 15.0 12.6 0.016 14.8 8.7 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling SNN_transmemb PF09049.5 gi|330835641|ref|YP_004410369.1| - 0.06 13.0 1.7 0.06 13.0 1.2 2.7 4 0 0 4 4 4 0 Stannin transmembrane DUF1129 PF06570.6 gi|330835641|ref|YP_004410369.1| - 0.18 11.0 4.6 0.11 11.8 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) EmrE PF13536.1 gi|330835641|ref|YP_004410369.1| - 2 8.6 12.3 0.2 11.8 4.7 1.9 1 1 1 2 2 2 0 Multidrug resistance efflux transporter DUF2173 PF09941.4 gi|330835642|ref|YP_004410370.1| - 0.00029 20.7 0.1 0.00057 19.7 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) DUF2173 PF09941.4 gi|330835643|ref|YP_004410371.1| - 8.9e-06 25.6 0.1 0.00019 21.3 0.0 2.1 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) SdpI PF13630.1 gi|330835643|ref|YP_004410371.1| - 0.051 13.2 2.9 0.093 12.4 2.0 1.4 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2207 PF09972.4 gi|330835643|ref|YP_004410371.1| - 0.058 11.9 0.7 0.061 11.8 0.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) COX2-transmemb PF09125.5 gi|330835643|ref|YP_004410371.1| - 0.058 12.9 5.1 0.2 11.2 3.5 2.0 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane DUF4184 PF13803.1 gi|330835644|ref|YP_004410372.1| - 0.028 13.7 3.0 0.033 13.5 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4184) DUF1049 PF06305.6 gi|330835644|ref|YP_004410372.1| - 0.71 9.3 0.1 0.71 9.3 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1049) Citrate_synt PF00285.16 gi|330835645|ref|YP_004410373.1| - 8.2e-127 422.7 0.0 9.3e-127 422.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase CBS PF00571.23 gi|330835646|ref|YP_004410374.1| - 1.2e-27 95.4 1.5 5.7e-15 54.8 0.1 2.1 2 0 0 2 2 2 2 CBS domain SAF PF08666.7 gi|330835646|ref|YP_004410374.1| - 0.073 13.4 0.7 5.6 7.4 0.0 2.3 2 0 0 2 2 2 0 SAF domain PEP_mutase PF13714.1 gi|330835647|ref|YP_004410375.1| - 2e-57 194.1 0.4 2.6e-57 193.7 0.3 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.16 gi|330835647|ref|YP_004410375.1| - 1.3e-13 50.0 0.9 1.2e-12 46.8 0.4 2.0 1 1 1 2 2 2 2 Isocitrate lyase family Pantoate_transf PF02548.10 gi|330835647|ref|YP_004410375.1| - 0.052 12.6 0.0 0.12 11.4 0.0 1.6 1 1 0 1 1 1 0 Ketopantoate hydroxymethyltransferase DUF881 PF05949.7 gi|330835647|ref|YP_004410375.1| - 0.053 12.9 0.0 0.1 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) MmgE_PrpD PF03972.9 gi|330835648|ref|YP_004410376.1| - 6e-109 364.1 0.0 7e-109 363.9 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Ald_Xan_dh_C2 PF02738.13 gi|330835649|ref|YP_004410377.1| - 6.9e-106 354.7 0.0 9.2e-106 354.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330835649|ref|YP_004410377.1| - 1.9e-14 53.6 0.0 4.5e-14 52.4 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Tautomerase PF01361.16 gi|330835649|ref|YP_004410377.1| - 0.066 12.8 0.0 7.1 6.3 0.0 2.6 2 0 0 2 2 2 0 Tautomerase enzyme Acyl-CoA_dh_1 PF00441.19 gi|330835650|ref|YP_004410378.1| - 2.5e-38 131.5 2.2 3.3e-38 131.1 1.5 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|330835650|ref|YP_004410378.1| - 7.6e-25 87.6 0.0 2.4e-24 86.0 0.0 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|330835650|ref|YP_004410378.1| - 9.8e-20 71.1 0.4 1.6e-19 70.5 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|330835650|ref|YP_004410378.1| - 1.3e-16 59.8 0.2 2.5e-16 58.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain AnfO_nitrog PF09582.5 gi|330835650|ref|YP_004410378.1| - 0.11 11.5 0.0 0.25 10.4 0.0 1.5 1 0 0 1 1 1 0 Iron only nitrogenase protein AnfO (AnfO_nitrog) Aminotran_3 PF00202.16 gi|330835651|ref|YP_004410379.1| - 6.7e-98 327.6 0.0 7.8e-98 327.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Acyl-CoA_dh_1 PF00441.19 gi|330835653|ref|YP_004410381.1| - 4.1e-38 130.8 2.4 6.3e-38 130.2 1.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|330835653|ref|YP_004410381.1| - 3e-21 76.0 0.0 1.5e-20 73.8 0.0 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|330835653|ref|YP_004410381.1| - 4.2e-14 51.7 0.3 8.5e-14 50.8 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|330835653|ref|YP_004410381.1| - 4.5e-13 49.5 0.3 1.2e-12 48.2 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain 4HBT PF03061.17 gi|330835654|ref|YP_004410382.1| - 2e-16 59.8 0.1 2.7e-16 59.4 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|330835654|ref|YP_004410382.1| - 0.00071 19.5 0.2 0.0012 18.7 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|330835654|ref|YP_004410382.1| - 0.0074 16.0 0.0 0.0085 15.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.14 gi|330835654|ref|YP_004410382.1| - 0.0077 15.6 0.1 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain DUF4099 PF13351.1 gi|330835654|ref|YP_004410382.1| - 0.033 14.0 0.6 0.27 11.1 0.0 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF4099) PS-DH PF14765.1 gi|330835654|ref|YP_004410382.1| - 0.062 12.4 0.0 0.069 12.2 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase DUF3100 PF11299.3 gi|330835654|ref|YP_004410382.1| - 0.083 12.0 0.0 0.084 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3100) Acyl-CoA_dh_1 PF00441.19 gi|330835655|ref|YP_004410383.1| - 4.9e-39 133.8 1.0 7.6e-39 133.2 0.7 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|330835655|ref|YP_004410383.1| - 5.4e-18 64.2 0.1 1.3e-17 63.0 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|330835655|ref|YP_004410383.1| - 2.9e-13 50.2 0.1 5.1e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|330835655|ref|YP_004410383.1| - 1.7e-09 38.2 0.0 5.7e-09 36.5 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain ER PF01133.12 gi|330835655|ref|YP_004410383.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 Enhancer of rudimentary Thiolase_C PF02803.13 gi|330835656|ref|YP_004410384.1| - 0.076 12.4 0.0 0.16 11.3 0.0 1.6 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_C PF02803.13 gi|330835657|ref|YP_004410385.1| - 0.0029 17.0 0.0 1.7 8.0 0.0 2.5 2 1 0 2 2 2 2 Thiolase, C-terminal domain DUF35_N PF12172.3 gi|330835658|ref|YP_004410386.1| - 2e-08 33.9 2.3 2.9e-08 33.3 1.0 1.6 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2616 PF11077.3 gi|330835658|ref|YP_004410386.1| - 0.002 17.6 0.0 0.0027 17.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2616) DUF35 PF01796.12 gi|330835658|ref|YP_004410386.1| - 0.007 16.5 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain NMD3 PF04981.8 gi|330835658|ref|YP_004410386.1| - 0.022 13.8 0.4 0.032 13.3 0.3 1.2 1 0 0 1 1 1 0 NMD3 family DZR PF12773.2 gi|330835658|ref|YP_004410386.1| - 0.062 13.1 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330835658|ref|YP_004410386.1| - 0.1 11.8 2.4 0.19 10.9 1.7 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.3 gi|330835659|ref|YP_004410387.1| - 1.8e-09 37.2 0.6 2.8e-09 36.6 0.4 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF35 PF01796.12 gi|330835659|ref|YP_004410387.1| - 0.002 18.3 0.0 0.0033 17.6 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain NMD3 PF04981.8 gi|330835659|ref|YP_004410387.1| - 0.042 12.9 0.4 0.054 12.5 0.3 1.1 1 0 0 1 1 1 0 NMD3 family zf-ribbon_3 PF13248.1 gi|330835659|ref|YP_004410387.1| - 0.073 12.2 2.4 0.13 11.5 1.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|330835659|ref|YP_004410387.1| - 0.093 12.5 0.6 0.14 12.0 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|330835659|ref|YP_004410387.1| - 0.77 9.3 3.3 1.8 8.1 2.3 1.6 1 0 0 1 1 1 0 zinc-ribbon domain AMP-binding PF00501.23 gi|330835660|ref|YP_004410388.1| - 1.1e-70 238.1 0.0 1.4e-70 237.7 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|330835660|ref|YP_004410388.1| - 1.4e-15 57.9 0.0 2.9e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HxlR PF01638.12 gi|330835662|ref|YP_004410390.1| - 1.1e-21 76.2 0.1 1.4e-21 75.9 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|330835662|ref|YP_004410390.1| - 5.7e-08 32.3 0.0 4.9e-07 29.3 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|330835662|ref|YP_004410390.1| - 0.00025 20.8 0.0 0.0004 20.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|330835662|ref|YP_004410390.1| - 0.0014 18.4 0.0 0.0018 18.0 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|330835662|ref|YP_004410390.1| - 0.0018 17.9 0.1 0.0026 17.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|330835662|ref|YP_004410390.1| - 0.0021 17.4 0.0 0.0032 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RepL PF05732.6 gi|330835662|ref|YP_004410390.1| - 0.0034 16.6 0.1 0.0053 15.9 0.0 1.4 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) PadR PF03551.9 gi|330835662|ref|YP_004410390.1| - 0.013 15.2 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|330835662|ref|YP_004410390.1| - 0.019 14.6 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|330835662|ref|YP_004410390.1| - 0.021 14.4 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|330835662|ref|YP_004410390.1| - 0.033 14.1 0.0 0.046 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain 4HBT PF03061.17 gi|330835663|ref|YP_004410391.1| - 4.2e-14 52.4 0.0 5.6e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|330835663|ref|YP_004410391.1| - 0.0039 17.1 0.0 0.0048 16.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) PilZ PF07238.9 gi|330835663|ref|YP_004410391.1| - 0.0091 15.9 0.0 0.27 11.2 0.0 2.1 2 0 0 2 2 2 1 PilZ domain LEF-4 PF05098.7 gi|330835665|ref|YP_004410393.1| - 0.029 13.1 0.1 0.031 13.0 0.0 1.0 1 0 0 1 1 1 0 Late expression factor 4 (LEF-4) DUF3124 PF11322.3 gi|330835665|ref|YP_004410393.1| - 0.041 13.8 0.1 0.05 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3124) Pirin PF02678.11 gi|330835668|ref|YP_004410396.1| - 7e-39 132.0 0.0 1.4e-38 130.9 0.0 1.5 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.8 gi|330835668|ref|YP_004410396.1| - 2.7e-27 94.8 0.0 3.1e-26 91.4 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|330835668|ref|YP_004410396.1| - 0.037 13.5 1.4 0.14 11.6 0.1 2.4 2 1 0 2 2 2 0 Cupin domain Cupin_3 PF05899.7 gi|330835668|ref|YP_004410396.1| - 0.12 11.7 0.1 0.63 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF861) HI0933_like PF03486.9 gi|330835669|ref|YP_004410397.1| - 0.022 13.2 0.0 0.025 13.0 0.0 1.0 1 0 0 1 1 1 0 HI0933-like protein MFS_1 PF07690.11 gi|330835670|ref|YP_004410398.1| - 3.2e-29 101.7 37.0 3.8e-16 58.7 13.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1129 PF06570.6 gi|330835670|ref|YP_004410398.1| - 0.35 10.1 23.5 1.1 8.4 3.5 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) UNC-93 PF05978.11 gi|330835670|ref|YP_004410398.1| - 7.1 6.0 17.7 0.029 13.8 4.3 2.6 2 1 0 2 2 2 0 Ion channel regulatory protein UNC-93 GNAT_acetyltr_2 PF13718.1 gi|330835672|ref|YP_004410400.1| - 1.2e-44 151.9 0.0 6.6e-44 149.5 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|330835672|ref|YP_004410400.1| - 2.8e-39 134.5 0.0 4.5e-39 133.9 0.0 1.3 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|330835672|ref|YP_004410400.1| - 5.5e-20 70.8 0.0 1.5e-19 69.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|330835672|ref|YP_004410400.1| - 8.6e-08 32.2 0.0 3.3e-07 30.3 0.0 2.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|330835672|ref|YP_004410400.1| - 2.1e-07 30.8 0.1 9.8e-07 28.7 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|330835672|ref|YP_004410400.1| - 0.047 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein Methyltransf_3 PF01596.12 gi|330835672|ref|YP_004410400.1| - 0.049 12.6 0.1 0.13 11.2 0.0 1.7 1 0 0 1 1 1 0 O-methyltransferase Acetyltransf_10 PF13673.1 gi|330835672|ref|YP_004410400.1| - 0.071 13.2 0.0 0.28 11.3 0.0 2.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF4143 PF13635.1 gi|330835672|ref|YP_004410400.1| - 0.088 12.9 0.3 0.39 10.9 0.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4143) 2-Hacid_dh_C PF02826.14 gi|330835673|ref|YP_004410401.1| - 3.3e-63 212.0 0.0 4.5e-63 211.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|330835673|ref|YP_004410401.1| - 4.6e-33 113.5 0.0 5.2e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|330835673|ref|YP_004410401.1| - 0.016 15.6 0.1 0.053 13.9 0.0 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|330835673|ref|YP_004410401.1| - 0.019 14.8 0.1 0.044 13.6 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|330835673|ref|YP_004410401.1| - 0.083 12.8 0.1 0.35 10.8 0.0 2.2 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|330835673|ref|YP_004410401.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding Sugar_tr PF00083.19 gi|330835675|ref|YP_004410403.1| - 4.1e-08 32.2 0.1 4.1e-08 32.2 0.1 2.3 1 1 1 2 2 2 1 Sugar (and other) transporter AKNA PF12443.3 gi|330835675|ref|YP_004410403.1| - 0.19 11.7 0.2 0.29 11.1 0.2 1.2 1 0 0 1 1 1 0 AT-hook-containing transcription factor Usp PF00582.21 gi|330835676|ref|YP_004410404.1| - 1.1e-27 96.8 0.6 1.4e-27 96.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|330835676|ref|YP_004410404.1| - 0.0011 19.4 0.0 0.0015 19.0 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase ABC_tran PF00005.22 gi|330835677|ref|YP_004410405.1| - 1.3e-28 99.9 0.0 5.2e-28 98.0 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|330835677|ref|YP_004410405.1| - 1.3e-11 44.9 9.2 2.6e-08 34.2 0.1 3.0 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|330835677|ref|YP_004410405.1| - 1.1e-06 28.0 0.8 0.013 14.6 0.0 3.1 2 1 0 3 3 3 2 AAA ATPase domain DUF4162 PF13732.1 gi|330835677|ref|YP_004410405.1| - 0.0032 17.9 3.5 0.0033 17.8 1.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|330835677|ref|YP_004410405.1| - 0.0067 15.6 0.7 2 7.5 0.0 2.8 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|330835677|ref|YP_004410405.1| - 0.017 14.6 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|330835677|ref|YP_004410405.1| - 0.044 13.4 0.0 0.13 11.8 0.0 1.8 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MutS_V PF00488.16 gi|330835677|ref|YP_004410405.1| - 0.062 12.7 0.1 4.3 6.6 0.0 2.2 2 0 0 2 2 2 0 MutS domain V AAA_23 PF13476.1 gi|330835677|ref|YP_004410405.1| - 0.072 13.4 11.2 1.2 9.3 7.8 2.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|330835677|ref|YP_004410405.1| - 0.08 13.0 0.5 0.47 10.5 0.4 2.3 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|330835677|ref|YP_004410405.1| - 0.1 11.8 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|330835677|ref|YP_004410405.1| - 0.13 12.1 0.0 0.33 10.8 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|330835677|ref|YP_004410405.1| - 0.26 11.5 2.4 2.7 8.1 1.6 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane PF01061.19 gi|330835678|ref|YP_004410406.1| - 3.1e-24 85.3 22.2 3.1e-24 85.3 15.4 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|330835678|ref|YP_004410406.1| - 1.5e-15 57.1 24.5 1.5e-15 57.1 17.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|330835678|ref|YP_004410406.1| - 8e-09 34.9 29.4 1.1e-08 34.5 20.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|330835678|ref|YP_004410406.1| - 0.00039 19.3 18.1 0.00062 18.7 12.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF1077 PF06417.7 gi|330835678|ref|YP_004410406.1| - 3.8 6.8 7.6 7 6.0 1.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) AA_permease_2 PF13520.1 gi|330835679|ref|YP_004410407.1| - 1e-17 63.8 45.1 1.3e-17 63.4 31.2 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|330835679|ref|YP_004410407.1| - 1.2e-15 56.8 43.3 1.5e-15 56.4 30.0 1.3 1 0 0 1 1 1 1 Amino acid permease DUF1689 PF07954.6 gi|330835679|ref|YP_004410407.1| - 0.34 10.7 2.9 0.54 10.1 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1689) SHOCT PF09851.4 gi|330835680|ref|YP_004410408.1| - 0.042 13.3 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 Short C-terminal domain POTRA_1 PF08478.5 gi|330835680|ref|YP_004410408.1| - 0.07 13.1 0.0 0.13 12.3 0.0 1.5 1 1 0 1 1 1 0 POTRA domain, FtsQ-type PA28_alpha PF02251.13 gi|330835680|ref|YP_004410408.1| - 0.082 13.0 0.2 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit AAA_31 PF13614.1 gi|330835681|ref|YP_004410409.1| - 7.3e-09 35.7 0.1 4.7e-06 26.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain CbiA PF01656.18 gi|330835681|ref|YP_004410409.1| - 2.2e-06 27.2 0.2 5e-06 26.0 0.0 1.6 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|330835681|ref|YP_004410409.1| - 0.00067 18.8 0.3 0.0014 17.7 0.2 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|330835681|ref|YP_004410409.1| - 0.0048 16.5 0.1 0.0082 15.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain YhjQ PF06564.7 gi|330835681|ref|YP_004410409.1| - 0.023 14.0 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein AAA_25 PF13481.1 gi|330835681|ref|YP_004410409.1| - 0.064 12.6 0.1 0.94 8.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain Helicase_RecD PF05127.9 gi|330835683|ref|YP_004410411.1| - 1.2e-50 171.6 0.0 3.1e-50 170.2 0.0 1.7 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|330835683|ref|YP_004410411.1| - 8.5e-40 136.1 0.0 7.7e-39 133.0 0.0 2.3 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|330835683|ref|YP_004410411.1| - 2.3e-25 88.0 0.0 2.3e-24 84.8 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|330835683|ref|YP_004410411.1| - 5e-07 29.7 0.0 3.3e-06 27.1 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain tRNA_bind_2 PF13725.1 gi|330835683|ref|YP_004410411.1| - 1.4e-05 25.0 0.1 3.7e-05 23.7 0.1 1.7 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_19 PF13245.1 gi|330835683|ref|YP_004410411.1| - 0.00018 21.1 0.1 0.00052 19.7 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Acetyltransf_1 PF00583.19 gi|330835683|ref|YP_004410411.1| - 0.00054 19.9 0.0 0.0013 18.7 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AAA_30 PF13604.1 gi|330835683|ref|YP_004410411.1| - 0.0016 18.0 0.0 0.0037 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|330835683|ref|YP_004410411.1| - 0.0044 16.5 0.0 0.043 13.3 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|330835683|ref|YP_004410411.1| - 0.0063 16.6 0.2 0.58 10.3 0.0 3.5 2 2 1 3 3 3 1 AAA domain DUF3945 PF13101.1 gi|330835683|ref|YP_004410411.1| - 0.12 11.6 0.1 0.32 10.3 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3945) DUF3638 PF12340.3 gi|330835683|ref|YP_004410411.1| - 0.17 10.8 0.0 0.32 9.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3638) MazG PF03819.12 gi|330835684|ref|YP_004410412.1| - 2.4e-13 49.7 0.2 2.9e-13 49.5 0.2 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|330835684|ref|YP_004410412.1| - 6.5e-05 23.1 0.1 7.1e-05 23.0 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|330835684|ref|YP_004410412.1| - 0.00069 19.5 0.1 0.0011 18.8 0.0 1.4 1 1 0 1 1 1 1 MazG-like family DUF1480 PF07351.8 gi|330835685|ref|YP_004410413.1| - 0.1 12.6 0.1 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1480) G_glu_transpept PF01019.16 gi|330835686|ref|YP_004410414.1| - 9.2e-103 344.4 0.0 1.2e-102 344.1 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peptidase_M48 PF01435.13 gi|330835687|ref|YP_004410415.1| - 1.6e-29 103.1 0.0 2e-29 102.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|330835687|ref|YP_004410415.1| - 2e-05 23.7 0.1 0.0052 15.7 0.0 2.2 2 0 0 2 2 2 2 BlaR1 peptidase M56 Tetraspannin PF00335.15 gi|330835687|ref|YP_004410415.1| - 0.047 12.9 0.1 0.06 12.6 0.1 1.2 1 0 0 1 1 1 0 Tetraspanin family RasGEF_N_2 PF14663.1 gi|330835687|ref|YP_004410415.1| - 0.096 12.6 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Epimerase PF01370.16 gi|330835688|ref|YP_004410416.1| - 1.2e-21 77.2 0.0 3.5e-21 75.7 0.0 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|330835688|ref|YP_004410416.1| - 0.00032 19.7 0.0 0.00066 18.6 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|330835688|ref|YP_004410416.1| - 0.0013 17.6 0.0 0.0059 15.5 0.0 2.0 2 1 0 2 2 2 1 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.9 gi|330835688|ref|YP_004410416.1| - 0.016 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|330835688|ref|YP_004410416.1| - 0.077 12.9 0.1 0.43 10.5 0.0 2.0 2 0 0 2 2 2 0 NADH(P)-binding NTP_transferase PF00483.18 gi|330835689|ref|YP_004410417.1| - 4e-23 81.9 0.0 4.7e-23 81.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|330835689|ref|YP_004410417.1| - 0.00063 19.8 0.0 0.00088 19.3 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain TPP_enzyme_N PF02776.13 gi|330835689|ref|YP_004410417.1| - 0.078 12.4 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Peptidase_C8 PF03569.8 gi|330835689|ref|YP_004410417.1| - 0.12 11.6 0.1 1.7 7.9 0.0 2.2 1 1 1 2 2 2 0 Peptidase family C8 CBS PF00571.23 gi|330835690|ref|YP_004410418.1| - 4.1e-30 103.3 3.9 2.3e-16 59.3 0.1 2.0 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|330835690|ref|YP_004410418.1| - 0.036 14.1 0.0 6.2 6.9 0.0 2.5 2 1 0 2 2 2 0 Ribosomal protein L9, C-terminal domain Polysacc_synt_3 PF13440.1 gi|330835691|ref|YP_004410419.1| - 1.1e-06 28.3 32.1 1.1e-06 28.3 22.3 3.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein DUF1689 PF07954.6 gi|330835691|ref|YP_004410419.1| - 0.013 15.3 0.0 0.037 13.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1689) DeoC PF01791.4 gi|330835692|ref|YP_004410420.1| - 9.7e-29 100.3 0.0 1.3e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase ThiG PF05690.9 gi|330835692|ref|YP_004410420.1| - 0.083 11.9 0.1 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG SIS PF01380.17 gi|330835694|ref|YP_004410422.1| - 2.3e-18 66.0 0.0 3.9e-18 65.3 0.0 1.3 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|330835694|ref|YP_004410422.1| - 2.4e-10 40.2 0.4 3.9e-07 29.8 0.1 2.3 1 1 1 2 2 2 2 SIS domain ApbA PF02558.11 gi|330835694|ref|YP_004410422.1| - 0.083 12.3 0.1 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA PRMT5 PF05185.11 gi|330835694|ref|YP_004410422.1| - 0.2 10.5 0.6 4 6.2 0.1 2.0 1 1 1 2 2 2 0 PRMT5 arginine-N-methyltransferase CbiA PF01656.18 gi|330835696|ref|YP_004410424.1| - 3.9e-11 42.7 0.0 9.5e-11 41.4 0.0 1.5 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|330835696|ref|YP_004410424.1| - 8.7e-09 35.4 0.0 5.2e-08 32.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|330835696|ref|YP_004410424.1| - 6.6e-05 22.1 0.1 0.00027 20.0 0.0 2.0 3 0 0 3 3 3 1 Anion-transporting ATPase DUF87 PF01935.12 gi|330835696|ref|YP_004410424.1| - 0.016 15.0 0.1 0.029 14.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 MipZ PF09140.6 gi|330835696|ref|YP_004410424.1| - 0.023 13.8 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ AAA_25 PF13481.1 gi|330835696|ref|YP_004410424.1| - 0.048 13.0 0.0 0.37 10.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|330835696|ref|YP_004410424.1| - 0.059 12.5 0.0 0.13 11.4 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_10 PF12846.2 gi|330835696|ref|YP_004410424.1| - 0.071 12.5 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|330835696|ref|YP_004410424.1| - 0.15 12.8 0.5 0.43 11.3 0.4 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|330835696|ref|YP_004410424.1| - 0.16 11.3 0.0 0.84 9.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RIO1 PF01163.17 gi|330835697|ref|YP_004410425.1| - 2.8e-29 101.8 0.0 4.7e-29 101.0 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|330835697|ref|YP_004410425.1| - 1e-06 28.1 0.0 1.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|330835697|ref|YP_004410425.1| - 1.6e-06 28.0 0.1 0.0012 18.6 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Rio2_N PF09202.6 gi|330835697|ref|YP_004410425.1| - 5.7e-05 23.1 0.1 0.00015 21.7 0.0 1.6 1 0 0 1 1 1 1 Rio2, N-terminal Choline_kinase PF01633.15 gi|330835697|ref|YP_004410425.1| - 0.003 17.1 0.0 0.36 10.3 0.0 2.3 2 0 0 2 2 2 2 Choline/ethanolamine kinase Kdo PF06293.9 gi|330835697|ref|YP_004410425.1| - 0.0071 15.4 0.0 0.055 12.5 0.0 2.0 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family DUF460 PF04312.8 gi|330835698|ref|YP_004410426.1| - 2.2e-47 160.0 0.1 5.2e-47 158.8 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Fib_alpha PF08702.5 gi|330835698|ref|YP_004410426.1| - 0.028 14.5 5.1 0.082 13.0 3.5 1.9 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|330835698|ref|YP_004410426.1| - 1.7 8.2 9.6 3.8 7.0 6.6 1.5 1 0 0 1 1 1 0 IncA protein AdoMet_Synthase PF01941.14 gi|330835699|ref|YP_004410427.1| - 3.3e-168 559.2 2.4 3.7e-168 559.1 1.7 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.17 gi|330835700|ref|YP_004410428.1| - 9.9e-18 63.4 0.1 1.3e-17 63.1 0.0 1.1 1 0 0 1 1 1 1 LSM domain HTH_20 PF12840.2 gi|330835701|ref|YP_004410429.1| - 7.1e-12 44.9 0.2 1.2e-11 44.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|330835701|ref|YP_004410429.1| - 8.8e-11 41.3 0.5 8.8e-11 41.3 0.4 2.2 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|330835701|ref|YP_004410429.1| - 8.4e-09 34.9 0.6 2.3e-08 33.5 0.1 1.9 1 1 2 3 3 3 1 MarR family HTH_34 PF13601.1 gi|330835701|ref|YP_004410429.1| - 4.5e-07 29.8 0.3 9.1e-07 28.8 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|330835701|ref|YP_004410429.1| - 4.6e-06 26.2 0.2 8.9e-06 25.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|330835701|ref|YP_004410429.1| - 1.4e-05 25.3 0.2 3.9e-05 23.8 0.1 1.8 2 1 0 2 2 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|330835701|ref|YP_004410429.1| - 3.3e-05 23.1 0.6 3.3e-05 23.1 0.4 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|330835701|ref|YP_004410429.1| - 0.0018 17.9 2.2 0.0021 17.7 0.4 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_41 PF14502.1 gi|330835701|ref|YP_004410429.1| - 0.0055 16.2 0.2 0.011 15.3 0.1 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain Cdc6_C PF09079.6 gi|330835701|ref|YP_004410429.1| - 0.012 15.3 0.4 0.049 13.3 0.1 1.8 1 1 1 2 2 2 0 CDC6, C terminal ArsR PF09824.4 gi|330835701|ref|YP_004410429.1| - 0.013 14.7 0.1 0.015 14.6 0.0 1.0 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_IclR PF09339.5 gi|330835701|ref|YP_004410429.1| - 0.015 14.8 0.1 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|330835701|ref|YP_004410429.1| - 0.019 14.8 0.4 0.036 13.9 0.2 1.6 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF742 PF05331.6 gi|330835701|ref|YP_004410429.1| - 0.024 14.2 0.2 0.026 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_11 PF08279.7 gi|330835701|ref|YP_004410429.1| - 0.033 13.8 0.3 0.047 13.3 0.2 1.3 1 0 0 1 1 1 0 HTH domain HTH_1 PF00126.22 gi|330835701|ref|YP_004410429.1| - 0.036 13.8 0.1 0.054 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family CTP_synth_N PF06418.9 gi|330835702|ref|YP_004410430.1| - 5.3e-95 317.6 1.3 7.6e-95 317.1 0.9 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|330835702|ref|YP_004410430.1| - 6.7e-50 169.2 0.0 1.5e-49 168.1 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|330835702|ref|YP_004410430.1| - 1.2e-11 44.5 0.0 4e-11 42.7 0.0 1.8 1 1 1 2 2 2 1 Peptidase C26 OMPdecase PF00215.19 gi|330835703|ref|YP_004410431.1| - 2.1e-21 76.4 3.3 2.4e-21 76.1 2.3 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.14 gi|330835703|ref|YP_004410431.1| - 0.0083 15.6 0.6 0.018 14.5 0.3 1.6 1 1 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain Syntaxin-18_N PF10496.4 gi|330835704|ref|YP_004410432.1| - 0.076 12.8 0.1 0.14 12.0 0.1 1.4 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus DUF2153 PF09921.4 gi|330835705|ref|YP_004410433.1| - 1.4e-54 183.1 6.2 1.5e-54 182.9 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Sigma54_activ_2 PF14532.1 gi|330835705|ref|YP_004410433.1| - 0.045 13.7 0.5 0.11 12.4 0.1 1.7 1 1 1 2 2 2 0 Sigma-54 interaction domain DUF4533 PF15047.1 gi|330835705|ref|YP_004410433.1| - 0.061 12.7 0.5 0.09 12.1 0.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF4533) FAM91_N PF14647.1 gi|330835705|ref|YP_004410433.1| - 0.064 12.3 0.1 0.078 12.0 0.1 1.0 1 0 0 1 1 1 0 FAM91 N-terminus zf-CpG_bind_C PF12269.3 gi|330835705|ref|YP_004410433.1| - 0.093 12.2 1.2 0.12 11.8 0.2 1.6 1 1 0 1 1 1 0 CpG binding protein zinc finger C terminal domain Fanconi_A PF03511.9 gi|330835705|ref|YP_004410433.1| - 0.11 12.2 0.6 0.23 11.2 0.4 1.7 1 1 0 1 1 1 0 Fanconi anaemia group A protein Trm112p PF03966.11 gi|330835706|ref|YP_004410434.1| - 1.9e-15 56.9 2.9 2.7e-15 56.4 2.0 1.3 1 0 0 1 1 1 1 Trm112p-like protein Prok-RING_1 PF14446.1 gi|330835706|ref|YP_004410434.1| - 0.014 15.0 1.9 2.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-UDP PF14569.1 gi|330835706|ref|YP_004410434.1| - 0.067 12.9 0.3 0.067 12.9 0.2 2.4 1 1 1 2 2 2 0 Zinc-binding RING-finger zf-DNL PF05180.7 gi|330835706|ref|YP_004410434.1| - 0.099 12.3 0.8 13 5.5 0.1 2.4 2 0 0 2 2 2 0 DNL zinc finger Endonuclease_7 PF02945.10 gi|330835706|ref|YP_004410434.1| - 0.12 12.0 0.4 0.16 11.7 0.0 1.5 1 1 0 1 1 1 0 Recombination endonuclease VII zf-ribbon_3 PF13248.1 gi|330835706|ref|YP_004410434.1| - 1.6 8.0 5.7 4.9 6.5 1.5 2.6 3 0 0 3 3 3 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|330835706|ref|YP_004410434.1| - 1.8 8.4 8.8 6.1 6.7 0.1 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon PHD PF00628.24 gi|330835706|ref|YP_004410434.1| - 4.7 6.9 7.0 3.4 7.4 0.3 2.4 2 1 0 2 2 2 0 PHD-finger PGM_PMM_I PF02878.11 gi|330835707|ref|YP_004410435.1| - 1.9e-40 137.5 0.0 4.2e-40 136.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.11 gi|330835707|ref|YP_004410435.1| - 1.5e-19 70.0 0.0 2.8e-19 69.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.11 gi|330835707|ref|YP_004410435.1| - 1.8e-19 70.0 0.0 4e-19 68.8 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|330835707|ref|YP_004410435.1| - 3.4e-12 46.1 0.1 3.1e-11 43.1 0.0 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DAO PF01266.19 gi|330835708|ref|YP_004410436.1| - 7e-57 192.9 0.0 7.9e-57 192.7 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|330835708|ref|YP_004410436.1| - 7.1e-05 22.0 0.3 0.00023 20.3 0.0 1.9 3 0 0 3 3 3 1 Thi4 family Shikimate_DH PF01488.15 gi|330835708|ref|YP_004410436.1| - 0.00025 21.1 0.2 0.00042 20.4 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_3 PF13738.1 gi|330835708|ref|YP_004410436.1| - 0.00029 20.9 0.0 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|330835708|ref|YP_004410436.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 ThiF family Pyr_redox_2 PF07992.9 gi|330835708|ref|YP_004410436.1| - 0.0039 17.0 0.0 0.05 13.4 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|330835708|ref|YP_004410436.1| - 0.0039 17.1 0.3 0.011 15.7 0.1 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|330835708|ref|YP_004410436.1| - 0.0044 16.4 0.0 0.008 15.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|330835708|ref|YP_004410436.1| - 0.0061 16.9 0.1 0.017 15.5 0.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|330835708|ref|YP_004410436.1| - 0.01 15.5 0.0 0.018 14.7 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_binding_3 PF01494.14 gi|330835708|ref|YP_004410436.1| - 0.023 13.7 0.1 0.036 13.1 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.12 gi|330835708|ref|YP_004410436.1| - 0.036 14.5 0.0 0.072 13.5 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_9 PF13454.1 gi|330835708|ref|YP_004410436.1| - 0.043 13.5 0.0 0.087 12.5 0.0 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|330835708|ref|YP_004410436.1| - 0.081 12.9 0.1 0.17 11.9 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain GIDA PF01134.17 gi|330835708|ref|YP_004410436.1| - 0.22 10.3 0.5 4.5 6.0 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer2_BFD PF04324.10 gi|330835709|ref|YP_004410437.1| - 8.9e-05 22.4 0.2 0.00017 21.5 0.1 1.5 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.9 gi|330835709|ref|YP_004410437.1| - 0.036 13.9 0.0 0.32 10.8 0.0 2.0 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Phosphodiest PF01663.17 gi|330835710|ref|YP_004410438.1| - 1.3e-35 123.4 0.1 1.5e-34 119.9 0.1 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|330835710|ref|YP_004410438.1| - 0.00062 19.4 0.0 0.0078 15.9 0.0 2.5 2 1 1 3 3 3 1 PglZ domain Sulfatase PF00884.18 gi|330835710|ref|YP_004410438.1| - 0.057 12.5 0.0 1.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Sulfatase HEM4 PF02602.10 gi|330835712|ref|YP_004410440.1| - 4.7e-19 68.5 0.0 5.6e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HHH_5 PF14520.1 gi|330835712|ref|YP_004410440.1| - 0.036 14.2 0.0 0.077 13.1 0.0 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain Methyltransf_8 PF05148.10 gi|330835712|ref|YP_004410440.1| - 0.044 13.4 0.1 0.061 12.9 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase Porphobil_deam PF01379.15 gi|330835713|ref|YP_004410441.1| - 5.3e-55 185.6 0.0 6.7e-55 185.3 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|330835713|ref|YP_004410441.1| - 5.6e-08 32.7 0.1 1.4e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain B12-binding PF02310.14 gi|330835713|ref|YP_004410441.1| - 0.023 14.5 0.0 3.5 7.5 0.0 2.5 1 1 1 2 2 2 0 B12 binding domain Aminotran_3 PF00202.16 gi|330835714|ref|YP_004410442.1| - 2e-67 227.4 0.0 2.6e-67 227.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|330835714|ref|YP_004410442.1| - 0.0001 21.3 0.0 0.00029 19.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.16 gi|330835715|ref|YP_004410443.1| - 2e-132 440.9 0.2 2.3e-132 440.8 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Mob_Pre PF01076.14 gi|330835715|ref|YP_004410443.1| - 0.075 12.6 0.0 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 Plasmid recombination enzyme GlutR_N PF05201.10 gi|330835716|ref|YP_004410444.1| - 1.8e-32 112.0 0.1 3.8e-32 110.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.15 gi|330835716|ref|YP_004410444.1| - 4.5e-17 61.8 0.1 9.8e-17 60.7 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain Shikimate_DH PF01488.15 gi|330835716|ref|YP_004410444.1| - 1.9e-15 57.1 0.0 5e-15 55.7 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|330835716|ref|YP_004410444.1| - 6.3e-05 23.3 0.0 0.00015 22.1 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|330835716|ref|YP_004410444.1| - 0.00027 20.7 0.1 0.00073 19.2 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|330835716|ref|YP_004410444.1| - 0.00073 18.7 0.0 0.0014 17.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|330835716|ref|YP_004410444.1| - 0.0011 18.3 0.0 0.0023 17.2 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|330835716|ref|YP_004410444.1| - 0.0018 17.8 0.3 0.01 15.3 0.1 2.2 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Pyr_redox PF00070.22 gi|330835716|ref|YP_004410444.1| - 0.0032 17.8 0.6 0.0088 16.4 0.1 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|330835716|ref|YP_004410444.1| - 0.0081 15.6 0.1 0.015 14.7 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|330835716|ref|YP_004410444.1| - 0.0099 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ThiF PF00899.16 gi|330835716|ref|YP_004410444.1| - 0.01 15.6 0.0 0.031 14.0 0.0 1.9 1 0 0 1 1 1 1 ThiF family Ldh_1_N PF00056.18 gi|330835716|ref|YP_004410444.1| - 0.028 14.2 0.0 0.057 13.2 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|330835716|ref|YP_004410444.1| - 0.051 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain GFO_IDH_MocA PF01408.17 gi|330835716|ref|YP_004410444.1| - 0.058 13.9 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|330835716|ref|YP_004410444.1| - 0.06 12.3 0.0 0.12 11.3 0.0 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase Pyr_redox_3 PF13738.1 gi|330835716|ref|YP_004410444.1| - 0.064 13.2 0.0 0.2 11.6 0.0 1.7 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|330835717|ref|YP_004410445.1| - 6.1e-24 84.2 0.0 1e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|330835717|ref|YP_004410445.1| - 8.8e-06 25.7 0.1 2.9e-05 24.0 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox PF00070.22 gi|330835717|ref|YP_004410445.1| - 0.00013 22.3 0.1 0.00035 20.9 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|330835717|ref|YP_004410445.1| - 0.00016 21.8 0.3 0.00078 19.5 0.0 2.0 1 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|330835717|ref|YP_004410445.1| - 0.0014 18.6 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding AdoHcyase_NAD PF00670.16 gi|330835717|ref|YP_004410445.1| - 0.0024 17.7 0.2 0.043 13.6 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330835717|ref|YP_004410445.1| - 0.008 15.3 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|330835717|ref|YP_004410445.1| - 0.024 14.3 0.1 0.081 12.5 0.0 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|330835717|ref|YP_004410445.1| - 0.027 14.3 0.0 0.056 13.3 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase IlvN PF07991.7 gi|330835717|ref|YP_004410445.1| - 0.034 13.5 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|330835717|ref|YP_004410445.1| - 0.043 13.3 0.2 0.092 12.3 0.1 1.5 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|330835717|ref|YP_004410445.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain ELFV_dehydrog PF00208.16 gi|330835717|ref|YP_004410445.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XPG_I PF00867.13 gi|330835718|ref|YP_004410446.1| - 3.4e-28 97.5 0.0 8.3e-28 96.2 0.0 1.7 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|330835718|ref|YP_004410446.1| - 5.5e-11 42.6 0.0 1.2e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|330835718|ref|YP_004410446.1| - 5.9e-05 23.2 2.7 6.2e-05 23.1 0.0 2.2 3 0 0 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|330835718|ref|YP_004410446.1| - 0.019 14.8 0.0 0.099 12.5 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|330835718|ref|YP_004410446.1| - 0.026 14.6 0.0 0.086 13.0 0.0 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix domain EAP30 PF04157.11 gi|330835720|ref|YP_004410448.1| - 0.016 14.3 0.0 0.018 14.2 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family DUF89 PF01937.14 gi|330835720|ref|YP_004410448.1| - 0.11 11.2 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function DUF89 AAA PF00004.24 gi|330835721|ref|YP_004410449.1| - 9.8e-97 320.2 0.0 1.7e-48 164.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|330835721|ref|YP_004410449.1| - 1.1e-31 108.6 2.0 1e-30 105.4 0.9 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|330835721|ref|YP_004410449.1| - 7.7e-15 54.5 0.0 7.2e-07 28.4 0.0 2.9 2 1 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|330835721|ref|YP_004410449.1| - 2.7e-13 50.1 1.0 0.00016 21.7 0.1 4.4 2 2 1 3 3 3 2 AAA domain AAA_2 PF07724.9 gi|330835721|ref|YP_004410449.1| - 4e-13 49.6 0.0 1.7e-06 28.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|330835721|ref|YP_004410449.1| - 8e-12 44.6 1.3 8e-12 44.6 0.9 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|330835721|ref|YP_004410449.1| - 1.7e-11 44.4 0.0 0.00013 22.0 0.0 3.6 3 1 0 3 3 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|330835721|ref|YP_004410449.1| - 2.1e-11 43.6 2.5 0.00029 20.5 0.1 4.5 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|330835721|ref|YP_004410449.1| - 5.3e-11 43.3 0.2 0.00012 22.9 0.0 3.4 2 1 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|330835721|ref|YP_004410449.1| - 1.2e-10 41.4 0.0 0.00035 20.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|330835721|ref|YP_004410449.1| - 3.2e-10 39.9 0.0 0.00027 20.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|330835721|ref|YP_004410449.1| - 6.9e-10 38.1 0.0 9.4e-05 21.2 0.0 2.7 2 0 0 2 2 2 2 TIP49 C-terminus IstB_IS21 PF01695.12 gi|330835721|ref|YP_004410449.1| - 2.9e-09 36.6 0.1 0.002 17.5 0.0 2.8 3 0 0 3 3 3 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|330835721|ref|YP_004410449.1| - 4.2e-09 35.7 0.0 0.0028 16.7 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|330835721|ref|YP_004410449.1| - 6.2e-08 33.0 0.0 0.0073 16.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|330835721|ref|YP_004410449.1| - 1.1e-07 31.8 0.4 0.0085 15.8 0.1 4.3 2 2 1 3 3 3 1 Archaeal ATPase AAA_28 PF13521.1 gi|330835721|ref|YP_004410449.1| - 1.1e-07 31.9 0.1 0.015 15.2 0.0 2.7 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|330835721|ref|YP_004410449.1| - 3.5e-07 29.6 0.6 0.0067 15.6 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.1 gi|330835721|ref|YP_004410449.1| - 4.9e-07 29.3 6.5 0.018 14.4 0.2 3.8 2 2 0 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|330835721|ref|YP_004410449.1| - 5.7e-07 29.6 0.0 0.012 15.7 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_19 PF13245.1 gi|330835721|ref|YP_004410449.1| - 1.7e-06 27.6 0.8 0.042 13.6 0.2 3.0 2 0 0 2 2 2 2 Part of AAA domain AAA_3 PF07726.6 gi|330835721|ref|YP_004410449.1| - 1e-05 25.1 0.0 0.15 11.6 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|330835721|ref|YP_004410449.1| - 1.5e-05 24.6 1.1 0.077 12.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|330835721|ref|YP_004410449.1| - 2e-05 24.1 0.1 0.56 9.6 0.0 3.5 2 1 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|330835721|ref|YP_004410449.1| - 3.6e-05 23.4 0.3 0.45 10.1 0.1 3.2 3 0 0 3 3 3 2 NACHT domain ABC_tran PF00005.22 gi|330835721|ref|YP_004410449.1| - 5e-05 23.6 0.0 0.26 11.5 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.8 gi|330835721|ref|YP_004410449.1| - 6.9e-05 21.9 0.0 0.84 8.5 0.0 3.7 3 1 0 3 3 3 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.13 gi|330835721|ref|YP_004410449.1| - 0.0001 22.0 0.0 0.023 14.3 0.0 3.0 3 0 0 3 3 3 1 Bacterial dnaA protein NB-ARC PF00931.17 gi|330835721|ref|YP_004410449.1| - 0.00011 21.2 0.0 0.041 12.7 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.1 gi|330835721|ref|YP_004410449.1| - 0.00011 22.2 0.0 0.3 11.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|330835721|ref|YP_004410449.1| - 0.00048 19.8 2.9 0.79 9.4 0.0 4.4 3 2 1 4 4 4 1 NTPase PhoH PF02562.11 gi|330835721|ref|YP_004410449.1| - 0.00058 19.1 0.7 0.29 10.3 0.2 2.7 2 0 0 2 2 2 1 PhoH-like protein Guanylate_kin PF00625.16 gi|330835721|ref|YP_004410449.1| - 0.00067 19.1 0.5 10 5.5 0.0 4.5 3 1 1 4 4 4 0 Guanylate kinase Parvo_NS1 PF01057.12 gi|330835721|ref|YP_004410449.1| - 0.00073 18.4 0.1 0.88 8.3 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 KaiC PF06745.8 gi|330835721|ref|YP_004410449.1| - 0.00083 18.5 0.3 1.6 7.8 0.0 3.6 2 1 1 3 3 3 1 KaiC ATP-synt_ab PF00006.20 gi|330835721|ref|YP_004410449.1| - 0.0018 17.8 0.0 0.28 10.6 0.0 2.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AFG1_ATPase PF03969.11 gi|330835721|ref|YP_004410449.1| - 0.0022 16.8 0.0 1.1 8.0 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase UPF0079 PF02367.12 gi|330835721|ref|YP_004410449.1| - 0.003 17.1 0.1 2.4 7.7 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 UFD1 PF03152.9 gi|330835721|ref|YP_004410449.1| - 0.0034 16.5 0.0 0.0081 15.3 0.0 1.6 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 AAA_10 PF12846.2 gi|330835721|ref|YP_004410449.1| - 0.0048 16.3 0.5 3.4 7.0 0.0 3.2 2 1 1 3 3 3 0 AAA-like domain PduV-EutP PF10662.4 gi|330835721|ref|YP_004410449.1| - 0.0089 15.5 0.0 2.9 7.3 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SKI PF01202.17 gi|330835721|ref|YP_004410449.1| - 0.011 15.5 0.2 6.9 6.5 0.0 2.8 3 0 0 3 3 2 0 Shikimate kinase AAA_11 PF13086.1 gi|330835721|ref|YP_004410449.1| - 0.013 15.0 0.1 1.7 8.1 0.1 2.7 2 1 0 2 2 2 0 AAA domain Viral_helicase1 PF01443.13 gi|330835721|ref|YP_004410449.1| - 0.036 13.5 0.0 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|330835721|ref|YP_004410449.1| - 0.04 13.8 0.6 0.59 10.0 0.0 2.7 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain DUF2075 PF09848.4 gi|330835721|ref|YP_004410449.1| - 0.044 12.7 0.0 9.1 5.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) IPT PF01745.11 gi|330835721|ref|YP_004410449.1| - 0.064 12.4 0.1 0.88 8.6 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase AAA_30 PF13604.1 gi|330835721|ref|YP_004410449.1| - 0.078 12.5 0.2 7.1 6.1 0.1 2.6 2 0 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|330835721|ref|YP_004410449.1| - 0.1 12.3 0.0 7.3 6.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Miro PF08477.8 gi|330835721|ref|YP_004410449.1| - 0.11 12.9 0.0 10 6.6 0.0 2.8 2 0 0 2 2 2 0 Miro-like protein SPT16 PF08644.6 gi|330835721|ref|YP_004410449.1| - 0.2 11.5 0.8 0.61 9.9 0.1 2.0 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) EF1_GNE PF00736.14 gi|330835722|ref|YP_004410450.1| - 4.5e-20 71.1 0.0 4.8e-20 71.0 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.6 gi|330835723|ref|YP_004410451.1| - 3.5e-17 62.1 13.6 1.3e-10 41.1 3.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.1 gi|330835723|ref|YP_004410451.1| - 1.3e-06 27.3 12.0 0.0029 16.7 0.5 3.2 2 1 1 3 3 3 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330835723|ref|YP_004410451.1| - 1.8e-06 27.4 4.7 6.4e-05 22.5 0.5 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|330835723|ref|YP_004410451.1| - 3.5e-05 23.5 7.8 0.01 15.6 5.8 2.5 1 1 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|330835723|ref|YP_004410451.1| - 0.00014 21.1 10.0 0.0097 15.2 4.4 2.7 2 1 0 2 2 2 1 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|330835723|ref|YP_004410451.1| - 0.00064 19.6 8.8 0.068 13.2 0.1 3.1 3 0 0 3 3 3 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ADK_lid PF05191.9 gi|330835723|ref|YP_004410451.1| - 0.00095 18.7 7.5 1.3 8.7 0.2 3.3 3 0 0 3 3 3 2 Adenylate kinase, active site lid zinc_ribbon_2 PF13240.1 gi|330835723|ref|YP_004410451.1| - 0.0019 17.6 14.0 0.19 11.2 0.2 3.7 3 1 0 3 3 3 1 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|330835723|ref|YP_004410451.1| - 0.0027 17.0 5.1 0.91 9.0 0.1 3.1 3 0 0 3 3 3 1 A2L zinc ribbon domain NinF PF05810.7 gi|330835723|ref|YP_004410451.1| - 0.0054 16.5 0.2 0.0054 16.5 0.1 1.4 2 0 0 2 2 1 1 NinF protein C1_1 PF00130.17 gi|330835723|ref|YP_004410451.1| - 0.0067 16.1 2.6 0.018 14.7 0.1 2.0 2 0 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HC5 PF06221.8 gi|330835723|ref|YP_004410451.1| - 0.0068 16.1 1.9 0.0068 16.1 1.4 2.1 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type zf-TFIIB PF13453.1 gi|330835723|ref|YP_004410451.1| - 0.0069 15.5 4.8 4.1 6.6 0.0 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger PolC_DP2 PF03833.8 gi|330835723|ref|YP_004410451.1| - 0.0095 13.6 2.0 0.01 13.5 1.4 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Auto_anti-p27 PF06677.7 gi|330835723|ref|YP_004410451.1| - 0.01 15.5 6.4 1.1 9.1 1.6 2.5 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) IBR PF01485.16 gi|330835723|ref|YP_004410451.1| - 0.011 15.5 5.2 0.54 10.1 3.6 2.1 1 1 0 1 1 1 0 IBR domain DUF35_N PF12172.3 gi|330835723|ref|YP_004410451.1| - 0.013 15.4 8.1 0.055 13.4 1.2 3.0 2 1 1 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|330835723|ref|YP_004410451.1| - 0.016 14.8 0.5 0.016 14.8 0.4 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|330835723|ref|YP_004410451.1| - 0.02 14.6 12.4 0.065 13.0 3.7 2.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain C1_3 PF07649.7 gi|330835723|ref|YP_004410451.1| - 0.021 14.8 8.7 0.45 10.6 0.4 2.4 2 1 0 2 2 2 0 C1-like domain Sgf11 PF08209.6 gi|330835723|ref|YP_004410451.1| - 0.024 13.9 7.3 0.71 9.2 0.1 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) DUF2296 PF10058.4 gi|330835723|ref|YP_004410451.1| - 0.024 14.3 5.6 2.7 7.8 0.4 3.0 3 0 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) Ribosomal_L37ae PF01780.14 gi|330835723|ref|YP_004410451.1| - 0.027 14.3 3.1 0.15 11.9 0.2 2.1 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-MYND PF01753.13 gi|330835723|ref|YP_004410451.1| - 0.028 14.2 2.2 0.12 12.2 1.5 1.9 1 1 0 1 1 1 0 MYND finger DUF1451 PF07295.6 gi|330835723|ref|YP_004410451.1| - 0.044 13.5 0.4 0.044 13.5 0.3 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zinc_ribbon_4 PF13717.1 gi|330835723|ref|YP_004410451.1| - 0.048 13.3 10.0 0.25 11.0 2.9 2.9 2 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|330835723|ref|YP_004410451.1| - 0.049 13.2 9.8 0.28 10.8 2.8 3.0 2 1 1 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|330835723|ref|YP_004410451.1| - 0.051 13.4 6.5 9.8 6.1 1.4 3.1 2 1 0 2 2 2 0 Rubredoxin DUF164 PF02591.10 gi|330835723|ref|YP_004410451.1| - 0.052 13.3 7.4 2.6 7.9 0.1 3.1 2 1 1 3 3 3 0 Putative zinc ribbon domain TFIIS_C PF01096.13 gi|330835723|ref|YP_004410451.1| - 0.053 13.1 5.1 7 6.3 0.2 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.1 gi|330835723|ref|YP_004410451.1| - 0.074 13.3 10.1 1.1 9.7 0.1 3.2 2 1 1 3 3 3 0 Zinc-finger double domain C1_2 PF03107.11 gi|330835723|ref|YP_004410451.1| - 0.075 13.1 5.4 1.7 8.8 0.2 2.2 2 0 0 2 2 2 0 C1 domain zf-CHY PF05495.7 gi|330835723|ref|YP_004410451.1| - 0.094 12.8 3.6 1.5 9.0 3.2 1.9 1 1 1 2 2 2 0 CHY zinc finger zf-RING_3 PF14369.1 gi|330835723|ref|YP_004410451.1| - 0.12 12.3 8.6 3 7.9 1.9 3.0 2 1 1 3 3 3 0 zinc-finger Tnp_zf-ribbon_2 PF13842.1 gi|330835723|ref|YP_004410451.1| - 0.12 12.7 5.3 3.8 8.0 0.4 2.9 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Prok-RING_1 PF14446.1 gi|330835723|ref|YP_004410451.1| - 0.15 11.8 6.1 0.075 12.7 0.6 2.2 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|330835723|ref|YP_004410451.1| - 0.15 12.0 5.9 15 5.6 0.1 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|330835723|ref|YP_004410451.1| - 0.16 11.6 12.0 3.5 7.4 0.1 3.5 4 0 0 4 4 3 0 Nudix N-terminal zf-C4_Topoisom PF01396.14 gi|330835723|ref|YP_004410451.1| - 0.16 11.4 7.3 6.1 6.4 0.1 3.1 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zf-Mss51 PF13824.1 gi|330835723|ref|YP_004410451.1| - 0.2 11.5 10.2 2.4 8.0 3.3 2.8 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-UBP PF02148.14 gi|330835723|ref|YP_004410451.1| - 0.21 11.7 1.5 8.7 6.5 1.0 2.3 1 1 0 1 1 1 0 Zn-finger in ubiquitin-hydrolases and other protein TerY-C PF15616.1 gi|330835723|ref|YP_004410451.1| - 0.21 11.5 6.5 0.29 11.0 1.0 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain DUF4503 PF14951.1 gi|330835723|ref|YP_004410451.1| - 0.22 9.6 1.7 0.24 9.4 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) zf-C3HC4_4 PF15227.1 gi|330835723|ref|YP_004410451.1| - 0.22 11.3 6.4 0.61 10.0 0.6 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING NOB1_Zn_bind PF08772.6 gi|330835723|ref|YP_004410451.1| - 0.38 10.6 7.5 0.087 12.6 0.7 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-CCHC PF00098.18 gi|330835723|ref|YP_004410451.1| - 0.53 10.3 8.8 6.8 6.8 0.2 3.4 3 0 0 3 3 3 0 Zinc knuckle zf-HIT PF04438.11 gi|330835723|ref|YP_004410451.1| - 0.56 9.9 14.6 1.9 8.1 2.3 3.2 1 1 1 2 2 2 0 HIT zinc finger PHD PF00628.24 gi|330835723|ref|YP_004410451.1| - 0.56 9.9 6.8 21 4.9 4.7 2.4 1 1 0 1 1 1 0 PHD-finger Zn-ribbon_8 PF09723.5 gi|330835723|ref|YP_004410451.1| - 0.59 10.1 12.6 1.3 9.0 2.1 2.9 1 1 2 3 3 3 0 Zinc ribbon domain zf-C2H2 PF00096.21 gi|330835723|ref|YP_004410451.1| - 0.74 10.2 13.2 5.5 7.5 0.5 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type YhfH PF14149.1 gi|330835723|ref|YP_004410451.1| - 0.76 9.6 7.1 9.6 6.0 0.1 3.1 3 0 0 3 3 3 0 YhfH-like protein Ribosomal_L32p PF01783.18 gi|330835723|ref|YP_004410451.1| - 1 9.5 5.9 8.5 6.6 0.9 3.0 1 1 1 2 2 2 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.8 gi|330835723|ref|YP_004410451.1| - 1.3 8.5 7.6 3.5 7.1 1.7 2.4 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|330835723|ref|YP_004410451.1| - 1.4 8.6 14.6 11 5.8 6.0 3.2 1 1 0 2 2 2 0 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|330835723|ref|YP_004410451.1| - 1.4 8.7 11.0 1.6 8.5 0.1 3.0 1 1 1 3 3 3 0 PhnA Zinc-Ribbon zf-LITAF-like PF10601.4 gi|330835723|ref|YP_004410451.1| - 1.8 8.4 6.2 32 4.4 1.3 2.9 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain zf-AN1 PF01428.11 gi|330835723|ref|YP_004410451.1| - 2.2 8.2 8.4 10 6.0 1.2 2.7 2 2 1 3 3 3 0 AN1-like Zinc finger zf-NADH-PPase PF09297.6 gi|330835723|ref|YP_004410451.1| - 2.2 7.8 11.9 0.21 11.1 1.9 2.6 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain RRN7 PF11781.3 gi|330835723|ref|YP_004410451.1| - 2.2 7.8 8.2 4.2 6.9 0.4 3.1 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 Ogr_Delta PF04606.7 gi|330835723|ref|YP_004410451.1| - 2.7 7.7 6.5 6.3 6.5 0.0 2.9 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Zn_Tnp_IS1 PF03811.8 gi|330835723|ref|YP_004410451.1| - 2.7 7.5 5.1 22 4.6 0.0 3.0 3 0 0 3 3 3 0 InsA N-terminal domain Rpr2 PF04032.11 gi|330835723|ref|YP_004410451.1| - 3.2 7.7 6.2 18 5.3 4.3 2.4 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1272 PF06906.6 gi|330835723|ref|YP_004410451.1| - 3.3 7.6 8.3 58 3.6 5.8 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-Di19 PF05605.7 gi|330835723|ref|YP_004410451.1| - 3.7 7.7 8.4 5.4 7.2 0.2 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Terminase_GpA PF05876.7 gi|330835723|ref|YP_004410451.1| - 4.3 5.5 4.8 12 4.0 0.7 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-dskA_traR PF01258.12 gi|330835723|ref|YP_004410451.1| - 4.4 7.1 7.7 13 5.6 0.1 3.2 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-RING_5 PF14634.1 gi|330835723|ref|YP_004410451.1| - 4.8 7.0 8.1 5.1 6.9 1.0 2.4 1 1 1 2 2 2 0 zinc-RING finger domain DUF329 PF03884.9 gi|330835723|ref|YP_004410451.1| - 5.1 6.7 7.9 11 5.6 0.3 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF329) Desulfoferrod_N PF06397.7 gi|330835723|ref|YP_004410451.1| - 5.2 6.5 8.0 11 5.4 0.1 3.1 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-tcix PF14952.1 gi|330835723|ref|YP_004410451.1| - 5.6 6.3 13.5 2.3 7.6 0.3 3.0 1 1 2 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding RNHCP PF12647.2 gi|330835723|ref|YP_004410451.1| - 6.8 6.5 6.2 1.6 8.5 0.7 2.1 1 1 0 2 2 2 0 RNHCP domain CpXC PF14353.1 gi|330835723|ref|YP_004410451.1| - 6.8 6.6 9.1 7.1 6.6 0.3 2.8 1 1 2 3 3 3 0 CpXC protein zf-B_box PF00643.19 gi|330835723|ref|YP_004410451.1| - 7.1 6.6 7.4 1.9e+02 2.0 5.2 2.6 1 1 0 1 1 1 0 B-box zinc finger zf-C2H2_3 PF13878.1 gi|330835723|ref|YP_004410451.1| - 7.9 6.1 6.4 21 4.7 0.1 3.2 3 1 1 4 4 3 0 zinc-finger of acetyl-transferase ESCO Elf1 PF05129.8 gi|330835723|ref|YP_004410451.1| - 9.2 6.0 7.5 4.3 7.0 2.4 2.3 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like PTH2 PF01981.11 gi|330835724|ref|YP_004410452.1| - 1.5e-40 137.5 0.0 1.6e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 MoCF_biosynth PF00994.19 gi|330835724|ref|YP_004410452.1| - 0.064 12.6 0.5 0.11 11.9 0.3 1.4 1 1 0 1 1 1 0 Probable molybdopterin binding domain TruD PF01142.13 gi|330835725|ref|YP_004410453.1| - 9.7e-46 156.1 0.4 6.8e-39 133.6 0.0 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) tRNA-synt_2 PF00152.15 gi|330835726|ref|YP_004410454.1| - 6.7e-91 304.5 0.2 8.3e-91 304.2 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|330835726|ref|YP_004410454.1| - 2.4e-14 52.9 0.1 4.2e-14 52.1 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain KH_5 PF13184.1 gi|330835727|ref|YP_004410455.1| - 2.7e-08 33.4 0.9 4.9e-08 32.6 0.1 1.9 2 1 0 2 2 2 1 NusA-like KH domain Ribosomal_L40e PF01020.12 gi|330835728|ref|YP_004410456.1| - 5.2e-07 29.1 4.3 6.3e-07 28.8 3.0 1.2 1 0 0 1 1 1 1 Ribosomal L40e family zf-ribbon_3 PF13248.1 gi|330835728|ref|YP_004410456.1| - 0.0031 16.6 0.3 0.0042 16.2 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|330835728|ref|YP_004410456.1| - 0.0036 17.0 1.1 0.0046 16.7 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|330835728|ref|YP_004410456.1| - 0.0046 16.6 0.8 0.0055 16.3 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-RanBP PF00641.13 gi|330835728|ref|YP_004410456.1| - 0.01 14.9 3.2 0.014 14.4 2.2 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-tcix PF14952.1 gi|330835728|ref|YP_004410456.1| - 0.022 14.0 4.2 0.03 13.6 2.9 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding DnaJ_CXXCXGXG PF00684.14 gi|330835728|ref|YP_004410456.1| - 0.025 14.6 2.0 0.028 14.4 1.4 1.1 1 0 0 1 1 1 0 DnaJ central domain zinc_ribbon_2 PF13240.1 gi|330835728|ref|YP_004410456.1| - 0.047 13.1 0.7 0.079 12.4 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Paired_CXXCH_1 PF09699.5 gi|330835728|ref|YP_004410456.1| - 0.1 12.1 0.9 0.31 10.5 0.1 1.9 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) Spt4 PF06093.8 gi|330835728|ref|YP_004410456.1| - 0.17 11.8 1.3 0.19 11.6 0.9 1.2 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger zf-DHHC PF01529.15 gi|330835728|ref|YP_004410456.1| - 0.18 11.1 2.1 0.18 11.1 1.5 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase DNA_RNApol_7kD PF03604.8 gi|330835728|ref|YP_004410456.1| - 0.27 10.7 5.9 0.71 9.3 4.1 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Haem_bd PF14376.1 gi|330835728|ref|YP_004410456.1| - 0.3 10.7 3.1 0.42 10.2 2.2 1.4 1 1 0 1 1 1 0 Haem-binding domain Cytochrome_C7 PF14522.1 gi|330835728|ref|YP_004410456.1| - 0.34 10.5 3.6 1.1 8.9 2.3 1.8 1 1 0 1 1 1 0 Cytochrome c7 zf-C2H2_3 PF13878.1 gi|330835728|ref|YP_004410456.1| - 0.57 9.8 5.0 1.3 8.6 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF35_N PF12172.3 gi|330835728|ref|YP_004410456.1| - 0.59 10.1 2.8 1.3 9.0 1.9 1.6 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1924 PF09086.6 gi|330835728|ref|YP_004410456.1| - 0.6 10.1 2.9 3.5 7.7 1.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1924) DUF2082 PF09855.4 gi|330835728|ref|YP_004410456.1| - 0.83 9.5 3.9 3.6 7.5 0.4 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF2296 PF10058.4 gi|330835728|ref|YP_004410456.1| - 2.6 7.8 5.0 45 3.8 0.5 2.1 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) RNA_POL_M_15KD PF02150.11 gi|330835728|ref|YP_004410456.1| - 2.8 7.6 5.6 2.3 7.9 0.2 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit RRN7 PF11781.3 gi|330835728|ref|YP_004410456.1| - 3.1 7.3 5.6 2.7 7.5 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Mu-like_Com PF10122.4 gi|330835728|ref|YP_004410456.1| - 5.8 6.0 9.0 85 2.3 6.3 2.1 1 1 0 1 1 1 0 Mu-like prophage protein Com DUF2204 PF09970.4 gi|330835729|ref|YP_004410457.1| - 1.8e-54 183.9 6.0 2e-54 183.8 4.1 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PHAT PF09246.5 gi|330835729|ref|YP_004410457.1| - 0.068 12.7 0.2 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 PHAT TPP_enzyme_M PF00205.17 gi|330835730|ref|YP_004410458.1| - 3.9e-33 114.1 0.0 2.3e-32 111.5 0.0 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.13 gi|330835730|ref|YP_004410458.1| - 1e-23 83.6 0.0 1.6e-23 83.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GMP_synt_C PF00958.17 gi|330835731|ref|YP_004410459.1| - 9.1e-24 83.0 0.1 2.3e-23 81.6 0.1 1.7 1 0 0 1 1 1 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|330835731|ref|YP_004410459.1| - 1.3e-11 43.9 0.1 6.3e-11 41.6 0.1 1.9 1 1 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.15 gi|330835731|ref|YP_004410459.1| - 4.8e-07 29.4 0.0 7.8e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|330835731|ref|YP_004410459.1| - 0.00061 19.1 0.0 0.083 12.1 0.0 2.5 2 1 1 3 3 3 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|330835731|ref|YP_004410459.1| - 0.00072 18.2 0.0 0.12 10.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase ThiI PF02568.9 gi|330835731|ref|YP_004410459.1| - 0.0075 15.7 0.0 0.077 12.4 0.0 2.3 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) DUF1152 PF06626.7 gi|330835731|ref|YP_004410459.1| - 0.03 13.4 0.1 0.12 11.4 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1152) Asn_synthase PF00733.16 gi|330835731|ref|YP_004410459.1| - 0.033 13.7 0.1 0.073 12.5 0.0 1.6 2 0 0 2 2 2 0 Asparagine synthase DUF2392 PF10288.4 gi|330835731|ref|YP_004410459.1| - 0.059 13.7 0.0 0.35 11.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2392) GATase_3 PF07685.9 gi|330835732|ref|YP_004410460.1| - 2.9e-24 85.4 0.0 4.9e-24 84.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|330835732|ref|YP_004410460.1| - 9.4e-10 38.2 0.0 1.8e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|330835732|ref|YP_004410460.1| - 1.9e-09 37.4 0.0 2.9e-08 33.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain GATase PF00117.23 gi|330835732|ref|YP_004410460.1| - 0.0026 17.2 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.14 gi|330835732|ref|YP_004410460.1| - 0.024 14.2 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family CobS PF02654.10 gi|330835733|ref|YP_004410461.1| - 4.2e-32 111.5 8.5 7.1e-32 110.8 5.9 1.3 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase ADH_N PF08240.7 gi|330835735|ref|YP_004410463.1| - 3.1e-24 84.8 0.5 5.3e-24 84.0 0.3 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|330835735|ref|YP_004410463.1| - 2.5e-15 56.1 0.0 4.4e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pyr_redox_3 PF13738.1 gi|330835735|ref|YP_004410463.1| - 0.0023 18.0 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N_2 PF13602.1 gi|330835735|ref|YP_004410463.1| - 0.014 16.2 0.0 0.023 15.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ACOX PF01756.14 gi|330835735|ref|YP_004410463.1| - 0.031 13.6 0.1 0.042 13.2 0.1 1.2 1 0 0 1 1 1 0 Acyl-CoA oxidase FAD_binding_3 PF01494.14 gi|330835735|ref|YP_004410463.1| - 0.045 12.8 0.0 0.068 12.2 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Shikimate_DH PF01488.15 gi|330835735|ref|YP_004410463.1| - 0.062 13.4 0.1 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Peptidase_M48 PF01435.13 gi|330835736|ref|YP_004410464.1| - 2.9e-21 76.1 1.8 4.8e-20 72.0 1.2 2.4 1 1 0 1 1 1 1 Peptidase family M48 KH_1 PF00013.24 gi|330835736|ref|YP_004410464.1| - 0.0069 16.0 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|330835736|ref|YP_004410464.1| - 0.023 14.3 0.1 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 KH domain DUF2268 PF10026.4 gi|330835736|ref|YP_004410464.1| - 0.055 12.8 0.1 0.1 11.9 0.0 1.4 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Reprolysin_4 PF13583.1 gi|330835736|ref|YP_004410464.1| - 0.058 12.9 0.0 0.088 12.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like DUF955 PF06114.8 gi|330835736|ref|YP_004410464.1| - 0.059 13.0 0.1 0.086 12.5 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF955) DUF512 PF04459.7 gi|330835736|ref|YP_004410464.1| - 0.06 12.4 0.0 0.099 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF512) Peptidase_M10 PF00413.19 gi|330835736|ref|YP_004410464.1| - 0.11 12.1 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Matrixin Ald_Xan_dh_C2 PF02738.13 gi|330835737|ref|YP_004410465.1| - 1e-126 423.4 0.0 1.3e-126 423.1 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.17 gi|330835737|ref|YP_004410465.1| - 1.8e-16 60.2 0.0 6.5e-09 35.8 0.0 2.5 1 1 1 2 2 2 2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain USP7_ICP0_bdg PF12436.3 gi|330835737|ref|YP_004410465.1| - 0.11 11.7 0.0 0.17 11.1 0.0 1.3 1 0 0 1 1 1 0 ICP0-binding domain of Ubiquitin-specific protease 7 DUF3829 PF12889.2 gi|330835737|ref|YP_004410465.1| - 0.21 10.7 2.2 0.39 9.8 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DUF1947 PF09183.5 gi|330835738|ref|YP_004410466.1| - 3e-27 94.1 1.1 4.3e-27 93.6 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.15 gi|330835738|ref|YP_004410466.1| - 8.2e-13 47.8 0.1 1.5e-12 47.0 0.0 1.5 1 0 0 1 1 1 1 PUA domain Pfg27 PF09216.5 gi|330835738|ref|YP_004410466.1| - 0.043 13.4 1.5 0.059 12.9 1.0 1.2 1 0 0 1 1 1 0 Pfg27 HTH_24 PF13412.1 gi|330835739|ref|YP_004410467.1| - 9e-07 28.1 0.2 9e-07 28.1 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330835739|ref|YP_004410467.1| - 1.1e-06 28.1 1.5 1.5e-06 27.6 0.1 2.0 2 1 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|330835739|ref|YP_004410467.1| - 2.7e-05 23.6 0.2 0.00012 21.5 0.0 2.1 2 1 0 2 2 2 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|330835739|ref|YP_004410467.1| - 3.4e-05 23.4 0.0 5.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|330835739|ref|YP_004410467.1| - 4.6e-05 23.2 0.4 0.00012 21.9 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|330835739|ref|YP_004410467.1| - 9.9e-05 21.9 0.0 0.00016 21.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Med9 PF07544.8 gi|330835739|ref|YP_004410467.1| - 0.00052 19.6 4.4 0.027 14.1 1.6 2.3 2 1 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 TrmB PF01978.14 gi|330835739|ref|YP_004410467.1| - 0.00054 19.6 0.5 0.0014 18.3 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|330835739|ref|YP_004410467.1| - 0.00072 19.2 0.3 0.0021 17.7 0.0 1.8 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|330835739|ref|YP_004410467.1| - 0.002 17.7 0.0 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TMF_DNA_bd PF12329.3 gi|330835739|ref|YP_004410467.1| - 0.0024 17.6 2.3 0.0036 17.0 1.6 1.3 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding HTH_45 PF14947.1 gi|330835739|ref|YP_004410467.1| - 0.0041 16.8 0.2 0.0074 16.0 0.1 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix Prefoldin PF02996.12 gi|330835739|ref|YP_004410467.1| - 0.0048 16.5 1.0 0.008 15.8 0.7 1.4 1 0 0 1 1 1 1 Prefoldin subunit HTH_Mga PF08280.6 gi|330835739|ref|YP_004410467.1| - 0.0049 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_20 PF12840.2 gi|330835739|ref|YP_004410467.1| - 0.0074 16.0 0.0 0.015 15.0 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain EAP30 PF04157.11 gi|330835739|ref|YP_004410467.1| - 0.012 14.7 0.1 0.58 9.2 0.0 2.0 2 0 0 2 2 2 0 EAP30/Vps36 family Prefoldin_2 PF01920.15 gi|330835739|ref|YP_004410467.1| - 0.013 15.2 1.7 0.021 14.6 1.1 1.3 1 0 0 1 1 1 0 Prefoldin subunit SlyX PF04102.7 gi|330835739|ref|YP_004410467.1| - 0.014 15.7 0.6 0.022 15.1 0.4 1.3 1 0 0 1 1 1 0 SlyX HTH_17 PF12728.2 gi|330835739|ref|YP_004410467.1| - 0.019 15.2 0.1 0.051 13.8 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|330835739|ref|YP_004410467.1| - 0.022 15.0 0.1 0.065 13.5 0.0 1.8 1 1 1 2 2 2 0 Winged helix DNA-binding domain FliJ PF02050.11 gi|330835739|ref|YP_004410467.1| - 0.023 14.7 0.3 0.032 14.2 0.2 1.2 1 0 0 1 1 1 0 Flagellar FliJ protein DUF4200 PF13863.1 gi|330835739|ref|YP_004410467.1| - 0.028 14.3 2.4 0.036 14.0 1.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Rrf2 PF02082.15 gi|330835739|ref|YP_004410467.1| - 0.031 14.3 0.3 0.16 12.0 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator DUF4423 PF14394.1 gi|330835739|ref|YP_004410467.1| - 0.031 13.8 1.1 0.5 9.8 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) IncA PF04156.9 gi|330835739|ref|YP_004410467.1| - 0.032 13.8 0.8 0.043 13.4 0.5 1.2 1 0 0 1 1 1 0 IncA protein DUF4479 PF14794.1 gi|330835739|ref|YP_004410467.1| - 0.041 13.4 2.3 0.49 9.9 0.3 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4479) TRM PF02005.11 gi|330835739|ref|YP_004410467.1| - 0.041 12.7 0.0 0.048 12.5 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase HTH_IclR PF09339.5 gi|330835739|ref|YP_004410467.1| - 0.043 13.3 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain bZIP_1 PF00170.16 gi|330835739|ref|YP_004410467.1| - 0.048 13.6 1.0 0.071 13.0 0.7 1.3 1 0 0 1 1 1 0 bZIP transcription factor DUF1423 PF07227.6 gi|330835739|ref|YP_004410467.1| - 0.055 12.1 0.1 0.055 12.1 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) F-112 PF09645.5 gi|330835739|ref|YP_004410467.1| - 0.062 13.1 0.6 0.35 10.7 0.0 1.9 1 1 0 2 2 2 0 F-112 protein FlaC_arch PF05377.6 gi|330835739|ref|YP_004410467.1| - 0.067 13.1 0.5 0.16 11.9 0.3 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Penicillinase_R PF03965.11 gi|330835739|ref|YP_004410467.1| - 0.079 13.0 0.3 0.42 10.7 0.0 2.0 1 1 0 2 2 2 0 Penicillinase repressor P4Ha_N PF08336.6 gi|330835739|ref|YP_004410467.1| - 0.079 12.7 0.4 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region FlxA PF14282.1 gi|330835739|ref|YP_004410467.1| - 0.081 12.8 0.3 0.11 12.4 0.2 1.3 1 0 0 1 1 1 0 FlxA-like protein HALZ PF02183.13 gi|330835739|ref|YP_004410467.1| - 0.082 12.6 1.3 0.15 11.7 0.9 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper HTH_Crp_2 PF13545.1 gi|330835739|ref|YP_004410467.1| - 0.09 12.5 1.2 0.21 11.3 0.0 2.1 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain GerE PF00196.14 gi|330835739|ref|YP_004410467.1| - 0.092 12.0 0.0 0.18 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4618 PF15397.1 gi|330835739|ref|YP_004410467.1| - 0.097 11.9 2.4 0.11 11.8 1.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) Glu-tRNAGln PF02686.10 gi|330835739|ref|YP_004410467.1| - 0.11 12.2 0.4 0.47 10.3 0.1 2.4 1 1 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Spc24 PF08286.6 gi|330835739|ref|YP_004410467.1| - 0.12 12.0 1.5 0.12 12.0 0.4 1.5 2 0 0 2 2 1 0 Spc24 subunit of Ndc80 DUF948 PF06103.6 gi|330835739|ref|YP_004410467.1| - 0.12 12.1 0.2 0.25 11.2 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) TFIIE_alpha PF02002.12 gi|330835739|ref|YP_004410467.1| - 0.14 11.6 3.4 0.67 9.4 2.4 2.0 1 1 0 1 1 1 0 TFIIE alpha subunit DivIC PF04977.10 gi|330835739|ref|YP_004410467.1| - 0.15 11.5 1.3 0.47 9.9 0.7 2.0 2 0 0 2 2 2 0 Septum formation initiator Fib_alpha PF08702.5 gi|330835739|ref|YP_004410467.1| - 0.15 12.1 3.0 0.23 11.5 2.1 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Ldh_1_C PF02866.13 gi|330835739|ref|YP_004410467.1| - 0.16 11.7 0.4 0.18 11.5 0.3 1.2 1 1 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain LexA_DNA_bind PF01726.11 gi|330835739|ref|YP_004410467.1| - 0.23 11.0 2.1 4.5 6.9 0.1 3.0 2 1 0 2 2 2 0 LexA DNA binding domain TSC22 PF01166.13 gi|330835739|ref|YP_004410467.1| - 0.36 10.8 2.8 0.82 9.6 1.6 1.8 1 1 1 2 2 2 0 TSC-22/dip/bun family DUF1319 PF07028.6 gi|330835739|ref|YP_004410467.1| - 0.68 10.1 4.9 1.2 9.3 3.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1319) OCD_Mu_crystall PF02423.10 gi|330835740|ref|YP_004410468.1| - 9.4e-31 106.7 0.1 1.7e-30 105.8 0.1 1.5 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|330835740|ref|YP_004410468.1| - 0.00012 22.1 0.2 0.00018 21.5 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|330835740|ref|YP_004410468.1| - 0.00042 20.2 0.1 0.00089 19.1 0.0 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|330835740|ref|YP_004410468.1| - 0.00091 18.4 0.2 0.002 17.2 0.1 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|330835740|ref|YP_004410468.1| - 0.012 16.0 0.2 0.043 14.2 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|330835740|ref|YP_004410468.1| - 0.065 13.7 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|330835740|ref|YP_004410468.1| - 0.088 12.7 0.4 0.18 11.7 0.1 1.7 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Aminotran_1_2 PF00155.16 gi|330835741|ref|YP_004410469.1| - 3.6e-29 101.8 0.0 4e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|330835741|ref|YP_004410469.1| - 3.5e-06 25.8 0.0 1.3e-05 23.9 0.0 1.7 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase QRPTase_C PF01729.14 gi|330835741|ref|YP_004410469.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Quinolinate phosphoribosyl transferase, C-terminal domain Peptidase_M24 PF00557.19 gi|330835742|ref|YP_004410470.1| - 1.1e-46 159.0 0.0 1.4e-46 158.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|330835742|ref|YP_004410470.1| - 3.8e-12 46.8 0.0 6.1e-12 46.1 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|330835743|ref|YP_004410471.1| - 1.3e-20 72.8 0.1 2.5e-20 71.9 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|330835743|ref|YP_004410471.1| - 0.0017 17.8 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Probable transposase DZR PF12773.2 gi|330835743|ref|YP_004410471.1| - 0.0034 17.1 0.2 0.0055 16.5 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|330835743|ref|YP_004410471.1| - 0.032 13.4 3.0 1.4 8.1 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|330835743|ref|YP_004410471.1| - 0.034 13.8 1.9 3.5 7.4 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|330835743|ref|YP_004410471.1| - 0.05 13.1 1.8 3.3 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain C1_3 PF07649.7 gi|330835743|ref|YP_004410471.1| - 0.12 12.4 1.1 0.26 11.3 0.8 1.6 1 0 0 1 1 1 0 C1-like domain TF_Zn_Ribbon PF08271.7 gi|330835743|ref|YP_004410471.1| - 0.14 11.5 2.5 10 5.5 0.1 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding DEDD_Tnp_IS110 PF01548.12 gi|330835743|ref|YP_004410471.1| - 0.14 11.7 0.1 20 4.8 0.0 3.5 2 1 0 2 2 2 0 Transposase zf-NADH-PPase PF09297.6 gi|330835743|ref|YP_004410471.1| - 0.39 10.2 3.5 3.2 7.3 2.4 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain zf-ZPR1 PF03367.8 gi|330835743|ref|YP_004410471.1| - 0.41 9.8 1.6 8.2 5.5 0.1 2.4 1 1 1 2 2 2 0 ZPR1 zinc-finger domain DUF1610 PF07754.6 gi|330835743|ref|YP_004410471.1| - 2.7 8.1 5.9 0.38 10.9 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|330835743|ref|YP_004410471.1| - 5.6 6.8 6.0 2.9 7.7 0.7 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GATase_4 PF13230.1 gi|330835744|ref|YP_004410472.1| - 0.0013 17.4 0.0 0.0016 17.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|330835744|ref|YP_004410472.1| - 0.0031 17.4 0.0 0.0056 16.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF4024 PF13216.1 gi|330835744|ref|YP_004410472.1| - 0.069 12.9 0.0 0.16 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) Lactamase_B_2 PF12706.2 gi|330835745|ref|YP_004410473.1| - 1.1e-21 77.2 0.5 1.5e-21 76.8 0.4 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|330835745|ref|YP_004410473.1| - 1.7e-11 44.1 1.0 3e-11 43.3 0.7 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|330835745|ref|YP_004410473.1| - 6e-07 29.3 0.0 1.1e-06 28.4 0.0 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PfkB PF00294.19 gi|330835746|ref|YP_004410474.1| - 4.7e-55 186.8 0.7 6.4e-55 186.4 0.5 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|330835746|ref|YP_004410474.1| - 1.1e-13 51.0 0.0 1.5e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|330835746|ref|YP_004410474.1| - 0.00016 21.0 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|330835747|ref|YP_004410475.1| - 2e-79 266.2 0.0 2.8e-79 265.7 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|330835747|ref|YP_004410475.1| - 5.6e-07 29.0 0.0 1e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.19 gi|330835747|ref|YP_004410475.1| - 1.3e-05 24.4 0.0 2.2e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyco_tranf_2_3 PF13641.1 gi|330835748|ref|YP_004410476.1| - 1.1e-42 146.3 0.0 1.5e-42 145.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|330835748|ref|YP_004410476.1| - 1.3e-29 103.0 0.0 2e-29 102.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|330835748|ref|YP_004410476.1| - 7.2e-29 100.8 4.0 1.4e-28 99.9 2.8 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|330835748|ref|YP_004410476.1| - 1.1e-13 50.9 0.0 2e-13 50.0 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|330835748|ref|YP_004410476.1| - 3e-13 49.4 0.0 6.6e-13 48.3 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Kelch_1 PF01344.20 gi|330835748|ref|YP_004410476.1| - 0.025 14.1 0.0 0.058 12.9 0.0 1.6 1 0 0 1 1 1 0 Kelch motif Glyco_tranf_2_4 PF13704.1 gi|330835748|ref|YP_004410476.1| - 0.082 13.2 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Fer4 PF00037.22 gi|330835751|ref|YP_004410479.1| - 3e-13 48.7 12.6 3e-07 29.7 4.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835751|ref|YP_004410479.1| - 1.5e-10 41.1 5.9 2.1e-10 40.7 4.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|330835751|ref|YP_004410479.1| - 1e-09 37.7 12.8 3.3e-06 26.7 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|330835751|ref|YP_004410479.1| - 1.6e-09 37.9 15.0 1.6e-07 31.5 6.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|330835751|ref|YP_004410479.1| - 8.3e-09 35.1 18.3 1.3e-06 28.0 5.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|330835751|ref|YP_004410479.1| - 1.4e-07 31.4 8.7 2.6e-05 24.1 4.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|330835751|ref|YP_004410479.1| - 1.5e-07 31.1 5.0 2e-07 30.7 3.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|330835751|ref|YP_004410479.1| - 1.6e-06 27.7 10.9 0.0058 16.4 2.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|330835751|ref|YP_004410479.1| - 1.1e-05 25.5 14.4 0.0082 16.6 4.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|330835751|ref|YP_004410479.1| - 1.1e-05 25.2 8.0 0.019 15.2 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|330835751|ref|YP_004410479.1| - 4.6e-05 23.6 0.6 0.29 11.5 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|330835751|ref|YP_004410479.1| - 0.00086 20.0 8.1 0.007 17.0 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|330835751|ref|YP_004410479.1| - 0.00088 19.7 9.2 0.3 11.6 3.2 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|330835751|ref|YP_004410479.1| - 0.0012 19.1 9.2 0.26 11.7 2.5 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|330835751|ref|YP_004410479.1| - 0.0029 17.9 10.1 0.011 16.1 2.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain DUF2761 PF10959.3 gi|330835751|ref|YP_004410479.1| - 0.078 12.5 0.0 0.094 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) UPF0126 PF03458.8 gi|330835752|ref|YP_004410480.1| - 5.6e-47 157.2 10.8 3e-24 84.4 2.3 2.2 2 0 0 2 2 2 2 UPF0126 domain Herpes_BMRF2 PF04633.7 gi|330835752|ref|YP_004410480.1| - 0.0029 16.6 0.5 0.0029 16.6 0.4 2.1 2 0 0 2 2 2 1 Herpesvirus BMRF2 protein FUSC_2 PF13515.1 gi|330835752|ref|YP_004410480.1| - 7.6 6.4 11.0 0.67 9.8 0.5 2.6 2 1 0 2 2 2 0 Fusaric acid resistance protein-like ABC_tran PF00005.22 gi|330835753|ref|YP_004410481.1| - 7.5e-31 107.2 0.2 1.6e-13 51.1 0.0 3.7 2 2 1 3 3 3 3 ABC transporter AAA_21 PF13304.1 gi|330835753|ref|YP_004410481.1| - 3.3e-16 60.0 10.1 8.7e-05 22.6 0.1 4.3 2 2 2 4 4 4 4 AAA domain Arch_ATPase PF01637.13 gi|330835753|ref|YP_004410481.1| - 2e-10 40.8 0.5 0.0002 21.1 0.0 2.4 2 1 0 2 2 2 2 Archaeal ATPase SMC_N PF02463.14 gi|330835753|ref|YP_004410481.1| - 6.8e-09 35.2 3.3 0.027 13.7 0.1 4.1 3 1 1 4 4 4 2 RecF/RecN/SMC N terminal domain NB-ARC PF00931.17 gi|330835753|ref|YP_004410481.1| - 1.2e-08 34.1 0.0 0.0012 17.7 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_14 PF13173.1 gi|330835753|ref|YP_004410481.1| - 1.5e-08 34.5 2.3 0.0011 18.8 0.0 3.4 2 2 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|330835753|ref|YP_004410481.1| - 3.3e-08 32.9 0.1 0.0054 16.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|330835753|ref|YP_004410481.1| - 6.5e-08 33.1 7.1 0.00057 20.2 0.1 3.0 3 1 1 4 4 3 2 AAA domain AAA_17 PF13207.1 gi|330835753|ref|YP_004410481.1| - 7.1e-08 33.3 1.0 0.02 15.7 0.0 3.3 2 1 0 3 3 3 2 AAA domain NACHT PF05729.7 gi|330835753|ref|YP_004410481.1| - 4.9e-07 29.5 0.0 0.0063 16.1 0.0 2.5 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.1 gi|330835753|ref|YP_004410481.1| - 5.6e-07 29.7 0.0 0.0018 18.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain cobW PF02492.14 gi|330835753|ref|YP_004410481.1| - 6.9e-07 28.8 0.2 0.038 13.4 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain Miro PF08477.8 gi|330835753|ref|YP_004410481.1| - 7.1e-07 29.7 0.1 0.056 13.9 0.0 2.4 2 0 0 2 2 2 2 Miro-like protein AAA_16 PF13191.1 gi|330835753|ref|YP_004410481.1| - 9.6e-07 28.9 0.0 0.012 15.6 0.0 2.3 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|330835753|ref|YP_004410481.1| - 1.1e-06 28.8 0.0 0.0044 17.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|330835753|ref|YP_004410481.1| - 2.6e-06 27.0 0.0 0.0015 18.1 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|330835753|ref|YP_004410481.1| - 3.9e-06 26.7 0.0 0.015 15.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_13 PF13166.1 gi|330835753|ref|YP_004410481.1| - 8.6e-06 24.5 0.2 0.3 9.5 0.0 3.2 3 0 0 3 3 3 2 AAA domain MobB PF03205.9 gi|330835753|ref|YP_004410481.1| - 1.6e-05 24.6 0.4 0.096 12.3 0.0 2.5 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|330835753|ref|YP_004410481.1| - 2.9e-05 24.0 0.1 0.026 14.4 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|330835753|ref|YP_004410481.1| - 3.2e-05 23.5 0.1 0.15 11.5 0.0 2.7 2 0 0 2 2 2 2 AAA-like domain DUF258 PF03193.11 gi|330835753|ref|YP_004410481.1| - 3.4e-05 23.0 0.0 0.16 11.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|330835753|ref|YP_004410481.1| - 4.5e-05 22.9 0.0 0.015 14.7 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|330835753|ref|YP_004410481.1| - 6.3e-05 23.2 0.8 0.043 14.1 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|330835753|ref|YP_004410481.1| - 7.3e-05 22.4 0.0 0.18 11.5 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|330835753|ref|YP_004410481.1| - 9.8e-05 21.9 0.1 0.094 12.1 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|330835753|ref|YP_004410481.1| - 0.00013 21.1 12.6 0.056 12.4 0.3 3.5 2 2 1 3 3 3 1 AAA ATPase domain AAA_28 PF13521.1 gi|330835753|ref|YP_004410481.1| - 0.00017 21.5 0.0 0.039 13.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF3584 PF12128.3 gi|330835753|ref|YP_004410481.1| - 0.00035 18.0 1.1 0.0095 13.3 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) Viral_helicase1 PF01443.13 gi|330835753|ref|YP_004410481.1| - 0.00042 19.9 0.1 0.81 9.1 0.0 2.5 3 0 0 3 3 2 2 Viral (Superfamily 1) RNA helicase Arf PF00025.16 gi|330835753|ref|YP_004410481.1| - 0.00067 18.9 0.1 0.047 12.9 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family NTPase_1 PF03266.10 gi|330835753|ref|YP_004410481.1| - 0.00078 19.1 0.3 1.3 8.7 0.0 2.7 2 0 0 2 2 2 1 NTPase AAA_24 PF13479.1 gi|330835753|ref|YP_004410481.1| - 0.00086 18.9 0.0 1.1 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|330835753|ref|YP_004410481.1| - 0.0012 19.0 0.0 0.71 10.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase G-alpha PF00503.15 gi|330835753|ref|YP_004410481.1| - 0.0015 17.2 0.1 0.061 11.9 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit AAA_25 PF13481.1 gi|330835753|ref|YP_004410481.1| - 0.0015 17.9 0.0 0.36 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|330835753|ref|YP_004410481.1| - 0.0015 18.3 0.0 0.18 11.7 0.0 2.5 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|330835753|ref|YP_004410481.1| - 0.0024 17.6 0.4 0.1 12.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|330835753|ref|YP_004410481.1| - 0.0025 17.3 0.1 1 8.8 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation T2SE PF00437.15 gi|330835753|ref|YP_004410481.1| - 0.003 16.5 0.0 1.6 7.6 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ATP_bind_1 PF03029.12 gi|330835753|ref|YP_004410481.1| - 0.0035 16.9 0.7 4.6 6.7 0.0 3.1 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|330835753|ref|YP_004410481.1| - 0.0045 16.5 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain SRPRB PF09439.5 gi|330835753|ref|YP_004410481.1| - 0.0057 15.8 0.0 1.6 7.9 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit Rad17 PF03215.10 gi|330835753|ref|YP_004410481.1| - 0.0099 14.6 0.1 0.035 12.7 0.0 1.8 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein PhoH PF02562.11 gi|330835753|ref|YP_004410481.1| - 0.012 14.8 0.0 5.3 6.2 0.0 2.6 2 0 0 2 2 2 0 PhoH-like protein Septin PF00735.13 gi|330835753|ref|YP_004410481.1| - 0.018 14.0 0.2 1.2 8.0 0.0 2.3 2 0 0 2 2 2 0 Septin GTP_EFTU PF00009.22 gi|330835753|ref|YP_004410481.1| - 0.02 14.3 0.0 0.69 9.3 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain ATP-synt_ab PF00006.20 gi|330835753|ref|YP_004410481.1| - 0.023 14.1 0.0 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_PrkA PF08298.6 gi|330835753|ref|YP_004410481.1| - 0.025 13.2 0.0 0.78 8.3 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain Zeta_toxin PF06414.7 gi|330835753|ref|YP_004410481.1| - 0.033 13.3 0.0 2.6 7.0 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|330835753|ref|YP_004410481.1| - 0.035 12.7 0.0 2 6.9 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain KAP_NTPase PF07693.9 gi|330835753|ref|YP_004410481.1| - 0.044 12.7 0.0 1.3 7.8 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain DUF87 PF01935.12 gi|330835753|ref|YP_004410481.1| - 0.045 13.5 0.1 1.7 8.4 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function DUF87 MutS_V PF00488.16 gi|330835753|ref|YP_004410481.1| - 0.051 12.9 0.1 0.92 8.8 0.0 2.6 3 0 0 3 3 3 0 MutS domain V Pox_A32 PF04665.7 gi|330835753|ref|YP_004410481.1| - 0.076 12.2 1.9 7.6 5.7 0.0 2.7 3 0 0 3 3 2 0 Poxvirus A32 protein ArgK PF03308.11 gi|330835753|ref|YP_004410481.1| - 0.088 11.5 0.0 3 6.5 0.0 2.3 2 0 0 2 2 2 0 ArgK protein IstB_IS21 PF01695.12 gi|330835753|ref|YP_004410481.1| - 0.1 11.9 0.1 3.2 7.1 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein Fst_toxin PF13955.1 gi|330835755|ref|YP_004410483.1| - 0.037 13.6 7.0 0.15 11.7 0.5 2.8 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system DUF1056 PF06341.6 gi|330835755|ref|YP_004410483.1| - 0.056 13.4 1.8 0.056 13.4 1.3 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF1056) Epimerase PF01370.16 gi|330835757|ref|YP_004410485.1| - 7.5e-41 140.1 0.0 1.1e-40 139.5 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|330835757|ref|YP_004410485.1| - 3.3e-14 52.2 0.0 4.9e-14 51.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|330835757|ref|YP_004410485.1| - 9.2e-12 44.4 0.1 4.4e-08 32.3 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.12 gi|330835757|ref|YP_004410485.1| - 8.3e-11 41.3 0.0 9.6e-11 41.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|330835757|ref|YP_004410485.1| - 1.9e-07 30.2 0.3 4.3e-05 22.5 0.2 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|330835757|ref|YP_004410485.1| - 5.6e-05 23.1 0.2 0.019 14.9 0.0 2.3 2 0 0 2 2 2 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|330835757|ref|YP_004410485.1| - 0.0005 20.1 0.0 0.00084 19.3 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding KR PF08659.5 gi|330835757|ref|YP_004410485.1| - 0.015 15.0 0.8 0.16 11.6 0.3 2.1 1 1 1 2 2 2 0 KR domain SRP19 PF01922.12 gi|330835758|ref|YP_004410486.1| - 7.7e-06 26.4 0.3 1.5e-05 25.4 0.2 1.4 1 1 0 1 1 1 1 SRP19 protein Ribosomal_S8e PF01201.17 gi|330835759|ref|YP_004410487.1| - 1.6e-34 118.8 4.5 1.8e-34 118.7 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Prenyltransf PF01255.14 gi|330835760|ref|YP_004410488.1| - 2.8e-70 235.9 2.5 3.2e-70 235.7 1.7 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase MAAL_N PF05034.8 gi|330835760|ref|YP_004410488.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus Peptidase_M20 PF01546.23 gi|330835761|ref|YP_004410489.1| - 9.6e-17 61.0 0.0 1.2e-16 60.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|330835761|ref|YP_004410489.1| - 6.4e-09 35.5 0.0 1.2e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|330835761|ref|YP_004410489.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 Aminotran_3 PF00202.16 gi|330835762|ref|YP_004410490.1| - 7.6e-97 324.1 0.0 1e-96 323.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|330835762|ref|YP_004410490.1| - 0.052 12.4 0.0 0.089 11.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II RimK PF08443.6 gi|330835763|ref|YP_004410491.1| - 5.5e-46 156.4 0.0 7.2e-46 156.0 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|330835763|ref|YP_004410491.1| - 4.2e-15 55.9 0.0 6.5e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|330835763|ref|YP_004410491.1| - 1.3e-11 43.9 0.0 1.8e-11 43.5 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|330835763|ref|YP_004410491.1| - 5.1e-08 32.0 0.0 6.3e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_5 PF13549.1 gi|330835763|ref|YP_004410491.1| - 1.8e-06 27.3 0.0 3.3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330835763|ref|YP_004410491.1| - 1.9e-06 27.8 0.0 2.9e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|330835763|ref|YP_004410491.1| - 4.1e-06 26.2 0.0 6.2e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|330835763|ref|YP_004410491.1| - 7.4e-06 25.4 0.0 5e-05 22.7 0.0 2.0 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|330835763|ref|YP_004410491.1| - 0.00051 19.4 0.0 0.00069 19.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|330835763|ref|YP_004410491.1| - 0.015 14.6 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|330835763|ref|YP_004410491.1| - 0.058 12.1 0.1 0.17 10.6 0.0 1.7 2 0 0 2 2 2 0 YheC/D like ATP-grasp Synapsin_C PF02750.9 gi|330835763|ref|YP_004410491.1| - 0.079 12.0 0.0 0.096 11.7 0.0 1.2 1 0 0 1 1 1 0 Synapsin, ATP binding domain zinc_ribbon_2 PF13240.1 gi|330835764|ref|YP_004410492.1| - 0.0099 15.3 1.1 0.52 9.8 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330835764|ref|YP_004410492.1| - 0.016 14.8 0.1 0.027 14.1 0.1 1.5 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|330835764|ref|YP_004410492.1| - 0.017 14.4 1.1 0.036 13.3 0.8 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|330835764|ref|YP_004410492.1| - 0.017 14.7 0.7 0.15 11.7 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_5 PF13719.1 gi|330835764|ref|YP_004410492.1| - 0.022 14.3 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|330835764|ref|YP_004410492.1| - 0.029 13.6 0.5 0.53 9.5 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|330835764|ref|YP_004410492.1| - 0.063 13.5 0.4 0.082 13.2 0.3 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|330835764|ref|YP_004410492.1| - 0.13 12.2 0.6 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Desulfoferrod_N PF06397.7 gi|330835764|ref|YP_004410492.1| - 0.33 10.3 2.7 0.64 9.4 0.9 2.0 1 1 2 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-IS66 PF13005.2 gi|330835764|ref|YP_004410492.1| - 0.47 10.4 2.1 2 8.4 0.3 2.4 1 1 2 3 3 3 0 zinc-finger binding domain of transposase IS66 AsnC_trans_reg PF01037.16 gi|330835765|ref|YP_004410493.1| - 1.3e-14 53.5 0.1 2.7e-14 52.6 0.0 1.5 2 0 0 2 2 2 1 AsnC family HTH_AsnC-type PF13404.1 gi|330835765|ref|YP_004410493.1| - 1.2e-11 43.9 0.2 2.1e-11 43.1 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|330835765|ref|YP_004410493.1| - 1.6e-11 43.4 2.3 4.7e-11 41.8 0.8 2.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|330835765|ref|YP_004410493.1| - 1.9e-06 27.4 2.5 3.1e-06 26.7 0.3 2.3 3 0 0 3 3 3 1 HTH domain HTH_Mga PF08280.6 gi|330835765|ref|YP_004410493.1| - 6.2e-05 22.6 0.4 0.00013 21.6 0.3 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain NapD PF03927.8 gi|330835765|ref|YP_004410493.1| - 0.00039 20.2 0.5 0.001 18.8 0.2 1.8 1 1 1 2 2 2 1 NapD protein HTH_DeoR PF08220.7 gi|330835765|ref|YP_004410493.1| - 0.0013 18.2 0.2 0.0022 17.4 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF4423 PF14394.1 gi|330835765|ref|YP_004410493.1| - 0.0021 17.6 0.3 0.0027 17.2 0.2 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|330835765|ref|YP_004410493.1| - 0.0042 16.9 0.4 0.0085 15.9 0.2 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|330835765|ref|YP_004410493.1| - 0.0095 15.6 0.2 0.02 14.6 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|330835765|ref|YP_004410493.1| - 0.021 14.5 0.2 0.14 11.8 0.1 2.3 3 0 0 3 3 3 0 MarR family HTH_34 PF13601.1 gi|330835765|ref|YP_004410493.1| - 0.029 14.3 0.1 0.044 13.8 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|330835765|ref|YP_004410493.1| - 0.034 13.9 0.0 0.057 13.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|330835765|ref|YP_004410493.1| - 0.043 13.4 0.0 0.087 12.5 0.0 1.4 1 0 0 1 1 1 0 MarR family TFIIE_alpha PF02002.12 gi|330835765|ref|YP_004410493.1| - 0.059 12.8 0.9 0.087 12.3 0.6 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit PAX PF00292.13 gi|330835765|ref|YP_004410493.1| - 0.068 12.8 0.5 1.1 9.0 0.3 2.3 1 1 0 1 1 1 0 'Paired box' domain FeoC PF09012.5 gi|330835765|ref|YP_004410493.1| - 0.081 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|330835765|ref|YP_004410493.1| - 0.086 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|330835765|ref|YP_004410493.1| - 0.11 12.6 0.5 0.41 10.7 0.2 2.1 2 1 1 3 3 2 0 Transcriptional regulator HTH_36 PF13730.1 gi|330835765|ref|YP_004410493.1| - 0.22 11.6 0.7 0.56 10.3 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_IS630 PF01710.11 gi|330835765|ref|YP_004410493.1| - 0.23 11.1 1.4 0.33 10.6 0.9 1.4 1 1 0 1 1 1 0 Transposase AA_kinase PF00696.23 gi|330835766|ref|YP_004410494.1| - 1.4e-30 106.5 5.2 1.6e-30 106.4 3.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.19 gi|330835767|ref|YP_004410495.1| - 1.1e-32 112.8 0.0 2.7e-32 111.5 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|330835767|ref|YP_004410495.1| - 1.4e-09 38.0 0.0 1.8e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Tox-ART-HYE1 PF15634.1 gi|330835768|ref|YP_004410496.1| - 0.043 12.7 0.5 0.083 11.8 0.3 1.5 1 1 0 1 1 1 0 HYE1 signature containing ADP-ribosyltransferase DUF3896 PF13035.1 gi|330835768|ref|YP_004410496.1| - 7.3 6.7 7.5 2.1 8.4 1.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3896) AAA_10 PF12846.2 gi|330835769|ref|YP_004410497.1| - 9.2e-22 77.8 0.3 1.4e-20 73.9 0.2 2.2 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|330835769|ref|YP_004410497.1| - 8.5e-10 37.5 0.0 2.5e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) DUF87 PF01935.12 gi|330835769|ref|YP_004410497.1| - 2.1e-07 31.0 0.4 5.6e-07 29.6 0.0 2.0 2 1 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|330835769|ref|YP_004410497.1| - 1.8e-05 24.3 0.0 0.00023 20.6 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.4 gi|330835769|ref|YP_004410497.1| - 2.4e-05 23.1 0.0 7.5e-05 21.5 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain TraG-D_C PF12696.2 gi|330835769|ref|YP_004410497.1| - 0.00019 21.3 0.0 0.00036 20.4 0.0 1.5 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG ResIII PF04851.10 gi|330835769|ref|YP_004410497.1| - 0.0021 17.9 0.0 0.0049 16.7 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Arch_ATPase PF01637.13 gi|330835769|ref|YP_004410497.1| - 0.0022 17.7 0.8 0.0079 15.9 0.0 2.1 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|330835769|ref|YP_004410497.1| - 0.0066 16.4 0.0 0.021 14.7 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain IstB_IS21 PF01695.12 gi|330835769|ref|YP_004410497.1| - 0.01 15.2 0.0 0.032 13.6 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|330835769|ref|YP_004410497.1| - 0.011 15.8 0.3 0.18 11.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|330835769|ref|YP_004410497.1| - 0.034 13.8 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|330835769|ref|YP_004410497.1| - 0.049 14.4 1.4 0.15 12.8 0.1 2.5 3 1 0 3 3 3 0 AAA domain T4SS-DNA_transf PF02534.9 gi|330835769|ref|YP_004410497.1| - 0.053 12.0 0.0 0.38 9.2 0.0 1.9 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer T2SE PF00437.15 gi|330835769|ref|YP_004410497.1| - 0.074 11.9 0.0 0.15 10.9 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_19 PF13245.1 gi|330835769|ref|YP_004410497.1| - 0.12 12.1 0.0 0.26 11.0 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|330835769|ref|YP_004410497.1| - 0.14 12.4 1.8 0.65 10.3 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|330835769|ref|YP_004410497.1| - 0.19 11.1 0.0 0.36 10.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|330835769|ref|YP_004410497.1| - 0.22 11.8 4.7 0.44 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF2321 PF10083.4 gi|330835771|ref|YP_004410499.1| - 0.014 14.9 0.0 0.041 13.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) NAD_binding_8 PF13450.1 gi|330835771|ref|YP_004410499.1| - 0.02 14.8 0.9 0.056 13.4 0.6 1.8 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain zf-C2H2_4 PF13894.1 gi|330835773|ref|YP_004410501.1| - 0.00061 19.9 0.1 0.0011 19.1 0.1 1.4 1 0 0 1 1 1 1 C2H2-type zinc finger FbpA PF05833.6 gi|330835774|ref|YP_004410502.1| - 1e-25 90.2 12.6 1.6e-25 89.6 8.8 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|330835774|ref|YP_004410502.1| - 3.5e-25 87.7 0.0 9e-25 86.3 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF814) YkyA PF10368.4 gi|330835774|ref|YP_004410502.1| - 0.0037 16.6 11.1 0.41 9.9 0.1 2.8 3 0 0 3 3 3 2 Putative cell-wall binding lipoprotein Herpes_ori_bp PF02399.10 gi|330835774|ref|YP_004410502.1| - 0.11 10.3 0.1 0.23 9.3 0.0 1.4 1 1 0 1 1 1 0 Origin of replication binding protein V_ATPase_I PF01496.14 gi|330835774|ref|YP_004410502.1| - 1.6 6.5 10.7 0.77 7.5 3.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF724 PF05266.9 gi|330835774|ref|YP_004410502.1| - 2.7 7.5 9.3 1 8.9 2.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF724) Syntaxin PF00804.20 gi|330835774|ref|YP_004410502.1| - 6.8 6.9 10.8 0.21 11.7 1.6 2.6 3 0 0 3 3 3 0 Syntaxin 7TMR-DISM_7TM PF07695.6 gi|330835775|ref|YP_004410503.1| - 0.13 11.8 10.2 0.15 11.7 7.1 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling NfeD PF01957.13 gi|330835775|ref|YP_004410503.1| - 1.3 9.1 7.4 0.47 10.5 3.2 1.6 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF2649 PF10854.3 gi|330835775|ref|YP_004410503.1| - 5.8 7.1 9.0 0.4 10.8 0.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2649) zf-LITAF-like PF10601.4 gi|330835775|ref|YP_004410503.1| - 5.8 6.8 5.7 1.7 8.5 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Mut7-C PF01927.11 gi|330835776|ref|YP_004410504.1| - 1.6e-39 135.1 6.1 3.3e-38 130.9 4.2 2.0 1 1 0 1 1 1 1 Mut7-C RNAse domain OrfB_Zn_ribbon PF07282.6 gi|330835776|ref|YP_004410504.1| - 8.8e-05 22.0 0.6 0.00017 21.1 0.4 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|330835776|ref|YP_004410504.1| - 0.0032 17.1 1.0 0.0058 16.3 0.7 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Rep_fac-A_C PF08646.5 gi|330835776|ref|YP_004410504.1| - 0.021 14.5 1.0 0.034 13.8 0.7 1.5 1 0 0 1 1 1 0 Replication factor-A C terminal domain HypA PF01155.14 gi|330835776|ref|YP_004410504.1| - 0.047 13.3 0.5 0.061 13.0 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2296 PF10058.4 gi|330835776|ref|YP_004410504.1| - 0.071 12.8 1.7 0.14 11.9 1.2 1.5 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) PHD_2 PF13831.1 gi|330835776|ref|YP_004410504.1| - 0.17 11.2 2.8 0.73 9.2 2.1 2.0 1 1 0 1 1 1 0 PHD-finger C1_4 PF07975.7 gi|330835776|ref|YP_004410504.1| - 1.7 8.6 4.2 0.75 9.8 1.1 1.7 2 0 0 2 2 2 0 TFIIH C1-like domain AMMECR1 PF01871.12 gi|330835777|ref|YP_004410505.1| - 2.2e-51 173.3 0.0 2.7e-51 173.0 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.1 gi|330835778|ref|YP_004410506.1| - 2.1e-30 104.3 2.8 1.3e-15 56.9 1.2 2.2 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|330835778|ref|YP_004410506.1| - 4e-07 29.6 0.8 0.0094 15.6 0.2 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|330835778|ref|YP_004410506.1| - 3.5e-06 27.1 4.5 0.0053 16.9 0.2 3.6 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|330835778|ref|YP_004410506.1| - 2.1e-05 24.4 3.9 0.0084 16.0 0.8 2.9 2 1 0 2 2 2 2 Glutaredoxin DSBA PF01323.15 gi|330835778|ref|YP_004410506.1| - 0.0073 15.8 0.1 3.3 7.2 0.0 2.5 2 1 0 2 2 2 2 DSBA-like thioredoxin domain TrbC_Ftype PF09673.5 gi|330835778|ref|YP_004410506.1| - 0.011 15.3 0.1 2.2 7.9 0.0 2.5 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein PDDEXK_1 PF12705.2 gi|330835778|ref|YP_004410506.1| - 0.043 13.1 0.0 2 7.7 0.0 2.2 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily KaiB PF07689.7 gi|330835778|ref|YP_004410506.1| - 0.047 13.1 0.0 0.26 10.7 0.0 2.1 2 0 0 2 2 2 0 KaiB domain Thioredoxin_4 PF13462.1 gi|330835778|ref|YP_004410506.1| - 0.38 10.7 3.2 4.9 7.1 0.0 3.0 2 2 1 3 3 3 0 Thioredoxin RHH_1 PF01402.16 gi|330835779|ref|YP_004410507.1| - 0.015 15.2 0.5 0.3 11.0 0.1 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family DUF607 PF04678.8 gi|330835779|ref|YP_004410507.1| - 0.084 12.7 0.3 0.5 10.2 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function, DUF607 dUTPase PF00692.14 gi|330835780|ref|YP_004410508.1| - 4.1e-21 74.7 0.0 5.7e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|330835780|ref|YP_004410508.1| - 1.3e-07 30.3 0.0 4.4e-07 28.6 0.0 1.9 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DNA_ligase_A_M PF01068.16 gi|330835781|ref|YP_004410509.1| - 6.8e-58 195.3 0.2 6.8e-58 195.3 0.1 1.8 3 0 0 3 3 3 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|330835781|ref|YP_004410509.1| - 3.1e-52 176.9 0.7 5.8e-52 176.0 0.5 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|330835781|ref|YP_004410509.1| - 4.9e-27 94.1 0.0 8.9e-27 93.3 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|330835781|ref|YP_004410509.1| - 0.023 14.3 1.5 0.67 9.6 0.0 2.5 3 0 0 3 3 3 0 mRNA capping enzyme, catalytic domain DUF493 PF04359.9 gi|330835781|ref|YP_004410509.1| - 0.032 14.5 1.3 0.14 12.5 0.3 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF493) AcylCoA_dehyd_C PF12186.3 gi|330835781|ref|YP_004410509.1| - 0.056 13.3 0.3 1.1 9.1 0.1 2.9 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal SNARE PF05739.14 gi|330835781|ref|YP_004410509.1| - 0.063 12.9 2.3 0.28 10.8 0.0 2.6 2 0 0 2 2 2 0 SNARE domain BBS2_N PF14781.1 gi|330835781|ref|YP_004410509.1| - 0.11 12.1 0.4 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, N-terminal DNA_ligase_OB_2 PF14743.1 gi|330835781|ref|YP_004410509.1| - 0.11 12.1 2.2 3.2 7.5 1.5 2.6 1 1 0 1 1 1 0 DNA ligase OB-like domain DUF2779 PF11074.3 gi|330835781|ref|YP_004410509.1| - 1.5 8.8 4.4 20 5.2 0.0 3.4 2 2 1 3 3 3 0 Domain of unknown function(DUF2779) Lactamase_B_2 PF12706.2 gi|330835782|ref|YP_004410510.1| - 8.3e-07 28.7 0.4 1.2e-05 24.9 0.1 2.1 1 1 1 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|330835782|ref|YP_004410510.1| - 0.0002 21.3 0.2 0.00046 20.2 0.1 1.5 1 0 0 1 1 1 1 DNA repair metallo-beta-lactamase RMMBL PF07521.7 gi|330835782|ref|YP_004410510.1| - 0.0096 15.7 0.0 0.13 12.0 0.0 2.3 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|330835782|ref|YP_004410510.1| - 2.1 7.9 6.6 20 4.7 4.6 2.1 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily Biotin_lipoyl_2 PF13533.1 gi|330835783|ref|YP_004410511.1| - 2.1e-22 78.4 6.6 2.7e-10 39.7 0.1 3.4 3 1 1 4 4 4 2 Biotin-lipoyl like Biotin_lipoyl PF00364.17 gi|330835783|ref|YP_004410511.1| - 1.1e-19 69.7 3.4 3.6e-19 68.1 2.4 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme HlyD PF00529.15 gi|330835783|ref|YP_004410511.1| - 2.1e-13 50.2 3.8 2.2e-06 27.2 0.1 2.2 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|330835783|ref|YP_004410511.1| - 2.8e-09 36.5 5.5 0.00028 20.1 0.1 2.4 2 1 1 3 3 3 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|330835783|ref|YP_004410511.1| - 1.1e-07 32.1 1.5 0.0021 18.3 0.0 2.6 2 0 0 2 2 2 2 HlyD family secretion protein RnfC_N PF13375.1 gi|330835783|ref|YP_004410511.1| - 3.3e-05 23.5 2.5 0.0004 20.0 1.4 2.8 1 1 2 3 3 3 1 RnfC Barrel sandwich hybrid domain GCV_H PF01597.14 gi|330835783|ref|YP_004410511.1| - 3.6e-05 23.4 0.5 8.8e-05 22.1 0.2 1.8 1 1 0 1 1 1 1 Glycine cleavage H-protein NQRA PF05896.6 gi|330835783|ref|YP_004410511.1| - 0.00015 21.0 0.7 0.00058 19.1 0.5 2.0 1 1 0 1 1 1 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PYNP_C PF07831.8 gi|330835783|ref|YP_004410511.1| - 0.00076 18.8 0.8 0.21 11.0 0.0 2.6 2 0 0 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain PTS_EIIA_1 PF00358.15 gi|330835783|ref|YP_004410511.1| - 0.002 17.7 0.6 0.2 11.2 0.0 3.2 1 1 0 1 1 1 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QRPTase_N PF02749.11 gi|330835783|ref|YP_004410511.1| - 0.0051 16.6 0.5 0.77 9.6 0.0 3.0 2 2 1 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain DUF2118 PF09891.4 gi|330835783|ref|YP_004410511.1| - 0.02 14.6 0.8 0.15 11.7 0.1 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.17 gi|330835783|ref|YP_004410511.1| - 0.034 14.1 1.5 0.47 10.5 1.0 2.9 1 1 0 1 1 1 0 Peptidase family M23 TGS PF02824.16 gi|330835783|ref|YP_004410511.1| - 0.082 12.7 0.0 0.25 11.2 0.0 1.8 1 0 0 1 1 1 0 TGS domain Apocytochr_F_C PF01333.14 gi|330835783|ref|YP_004410511.1| - 0.3 10.9 4.9 0.97 9.2 0.1 2.7 2 1 1 3 3 3 0 Apocytochrome F, C-terminal PASTA PF03793.14 gi|330835783|ref|YP_004410511.1| - 0.52 9.9 2.9 1.3 8.7 0.1 2.5 2 0 0 2 2 2 0 PASTA domain CPSase_L_D2 PF02786.12 gi|330835784|ref|YP_004410512.1| - 1.4e-59 200.8 0.0 2.1e-59 200.3 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|330835784|ref|YP_004410512.1| - 1.4e-40 137.8 0.1 2.4e-40 137.0 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|330835784|ref|YP_004410512.1| - 1.8e-34 117.9 0.0 3.2e-34 117.1 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATPgrasp_Ter PF15632.1 gi|330835784|ref|YP_004410512.1| - 5.3e-11 41.8 0.0 1.9e-10 40.0 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|330835784|ref|YP_004410512.1| - 1.9e-09 37.5 0.0 5.2e-09 36.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|330835784|ref|YP_004410512.1| - 3.5e-06 26.5 0.0 8.6e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|330835784|ref|YP_004410512.1| - 0.0011 18.3 0.0 0.0044 16.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|330835784|ref|YP_004410512.1| - 0.0054 16.2 0.0 0.012 15.1 0.0 1.7 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|330835784|ref|YP_004410512.1| - 0.028 14.2 0.0 0.05 13.4 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Acetyltransf_1 PF00583.19 gi|330835785|ref|YP_004410513.1| - 6.9e-19 67.6 0.0 1.1e-18 67.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|330835785|ref|YP_004410513.1| - 3.1e-10 39.6 0.0 4.8e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|330835785|ref|YP_004410513.1| - 9.2e-10 38.5 0.0 1.7e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|330835785|ref|YP_004410513.1| - 1.6e-09 37.8 0.0 2.2e-09 37.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|330835785|ref|YP_004410513.1| - 8.9e-08 32.1 0.0 1.6e-07 31.2 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|330835785|ref|YP_004410513.1| - 2.9e-07 30.5 0.4 9.9e-07 28.8 0.3 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|330835785|ref|YP_004410513.1| - 2.9e-06 27.1 0.0 0.0008 19.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|330835785|ref|YP_004410513.1| - 1.4e-05 25.2 0.0 2.3e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|330835785|ref|YP_004410513.1| - 0.05 13.1 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DFP PF04127.10 gi|330835786|ref|YP_004410514.1| - 4.1e-56 189.5 0.5 4.5e-54 182.8 0.1 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|330835786|ref|YP_004410514.1| - 2.6e-27 95.0 0.1 6.7e-27 93.7 0.1 1.7 1 0 0 1 1 1 1 Flavoprotein DUF1699 PF08004.6 gi|330835786|ref|YP_004410514.1| - 0.027 13.9 0.4 4.1 6.9 0.0 3.4 3 1 1 4 4 4 0 Protein of unknown function (DUF1699) Glycos_transf_1 PF00534.15 gi|330835787|ref|YP_004410515.1| - 6.1e-24 84.3 0.0 9.3e-24 83.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|330835787|ref|YP_004410515.1| - 1.6e-07 31.5 0.0 2.8e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|330835787|ref|YP_004410515.1| - 6.3e-07 29.6 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 FDX-ACB PF03147.9 gi|330835788|ref|YP_004410516.1| - 0.036 14.2 0.1 9 6.5 0.0 2.9 3 0 0 3 3 3 0 Ferredoxin-fold anticodon binding domain Metallophos_2 PF12850.2 gi|330835789|ref|YP_004410517.1| - 0.0012 18.6 0.0 0.0013 18.6 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TIM PF00121.13 gi|330835789|ref|YP_004410517.1| - 0.082 11.9 0.0 1 8.3 0.0 2.0 1 1 1 2 2 2 0 Triosephosphate isomerase CitG PF01874.11 gi|330835790|ref|YP_004410518.1| - 1.8e-41 142.1 0.0 2.1e-41 141.9 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase NTP_transf_2 PF01909.18 gi|330835791|ref|YP_004410519.1| - 7.7e-05 22.9 0.2 0.00017 21.8 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF1375 PF07119.7 gi|330835791|ref|YP_004410519.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1375) DUF1464 PF07318.7 gi|330835792|ref|YP_004410520.1| - 5.1e-81 272.1 0.3 1e-80 271.1 0.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1464) UPF0081 PF03652.10 gi|330835792|ref|YP_004410520.1| - 0.045 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0081) Lipoprotein_15 PF03640.10 gi|330835793|ref|YP_004410521.1| - 0.069 12.6 0.1 0.13 11.7 0.1 1.4 1 0 0 1 1 1 0 Secreted repeat of unknown function RHH_1 PF01402.16 gi|330835793|ref|YP_004410521.1| - 0.076 12.9 0.2 0.51 10.3 0.0 2.3 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF1963 PF09234.5 gi|330835794|ref|YP_004410522.1| - 0.032 14.4 0.0 0.038 14.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1963) Archease PF01951.11 gi|330835795|ref|YP_004410523.1| - 3e-42 143.8 1.3 3.3e-42 143.6 0.9 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) UPF0150 PF03681.10 gi|330835795|ref|YP_004410523.1| - 0.032 13.8 0.1 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) DUF2074 PF09847.4 gi|330835796|ref|YP_004410524.1| - 0.058 12.1 2.6 0.064 12.0 1.8 1.0 1 0 0 1 1 1 0 Predicted permease (DUF2074) RELT PF12606.3 gi|330835796|ref|YP_004410524.1| - 2.6 7.2 4.8 3.9 6.6 3.3 1.3 1 0 0 1 1 1 0 Tumour necrosis factor receptor superfamily member 19 DUF340 PF03956.8 gi|330835798|ref|YP_004410526.1| - 0.051 12.8 0.1 0.059 12.6 0.1 1.0 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) Trep_Strep PF09605.5 gi|330835798|ref|YP_004410526.1| - 0.057 13.0 0.6 0.067 12.8 0.4 1.1 1 0 0 1 1 1 0 Hypothetical bacterial integral membrane protein (Trep_Strep) MARVEL PF01284.18 gi|330835798|ref|YP_004410526.1| - 0.074 12.8 2.2 0.093 12.5 1.6 1.2 1 0 0 1 1 1 0 Membrane-associating domain Cytidylate_kin2 PF13189.1 gi|330835799|ref|YP_004410527.1| - 3.8e-24 85.5 1.8 1.6e-22 80.3 1.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|330835799|ref|YP_004410527.1| - 5.6e-16 59.0 0.1 8.1e-16 58.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|330835799|ref|YP_004410527.1| - 1.1e-14 55.2 0.1 2.1e-14 54.3 0.1 1.3 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|330835799|ref|YP_004410527.1| - 2.1e-08 34.1 0.0 2.9e-08 33.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate kinase AAA_33 PF13671.1 gi|330835799|ref|YP_004410527.1| - 5.1e-06 26.4 0.0 4.6e-05 23.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|330835799|ref|YP_004410527.1| - 4.2e-05 23.7 0.0 0.00028 21.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.17 gi|330835799|ref|YP_004410527.1| - 4.8e-05 23.2 0.0 8.3e-05 22.4 0.0 1.4 1 1 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.1 gi|330835799|ref|YP_004410527.1| - 0.00021 21.2 0.0 0.00035 20.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|330835799|ref|YP_004410527.1| - 0.00038 20.8 2.4 0.00053 20.3 1.7 1.3 1 1 0 1 1 1 1 AAA domain PRK PF00485.13 gi|330835799|ref|YP_004410527.1| - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family ABC_tran PF00005.22 gi|330835799|ref|YP_004410527.1| - 0.0011 19.2 0.0 0.0016 18.7 0.0 1.4 1 1 0 1 1 1 1 ABC transporter AAA_19 PF13245.1 gi|330835799|ref|YP_004410527.1| - 0.0013 18.4 0.0 0.0031 17.2 0.0 1.6 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|330835799|ref|YP_004410527.1| - 0.0016 18.5 0.1 0.0028 17.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.13 gi|330835799|ref|YP_004410527.1| - 0.002 17.6 0.0 0.0034 16.8 0.0 1.4 1 1 0 1 1 1 1 Cytidylate kinase CoaE PF01121.15 gi|330835799|ref|YP_004410527.1| - 0.0022 17.4 0.3 0.49 9.7 0.1 2.2 1 1 0 2 2 2 1 Dephospho-CoA kinase AAA_16 PF13191.1 gi|330835799|ref|YP_004410527.1| - 0.003 17.5 0.1 0.0057 16.6 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|330835799|ref|YP_004410527.1| - 0.0047 16.8 0.0 0.0084 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|330835799|ref|YP_004410527.1| - 0.0078 15.1 0.3 0.015 14.2 0.2 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein TIP49 PF06068.8 gi|330835799|ref|YP_004410527.1| - 0.013 14.2 0.4 0.024 13.3 0.3 1.6 1 1 0 1 1 1 0 TIP49 C-terminus NACHT PF05729.7 gi|330835799|ref|YP_004410527.1| - 0.019 14.6 0.0 0.036 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|330835799|ref|YP_004410527.1| - 0.019 14.6 0.0 0.05 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|330835799|ref|YP_004410527.1| - 0.02 13.9 0.0 0.073 12.1 0.0 1.8 1 1 1 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus UPF0079 PF02367.12 gi|330835799|ref|YP_004410527.1| - 0.024 14.2 0.1 0.037 13.6 0.1 1.5 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zot PF05707.7 gi|330835799|ref|YP_004410527.1| - 0.025 14.0 0.1 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) RNA_helicase PF00910.17 gi|330835799|ref|YP_004410527.1| - 0.027 14.6 0.0 0.047 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_29 PF13555.1 gi|330835799|ref|YP_004410527.1| - 0.036 13.5 0.5 0.088 12.3 0.2 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain Rad17 PF03215.10 gi|330835799|ref|YP_004410527.1| - 0.041 12.5 0.0 0.051 12.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Zeta_toxin PF06414.7 gi|330835799|ref|YP_004410527.1| - 0.041 12.9 0.1 0.082 11.9 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin APS_kinase PF01583.15 gi|330835799|ref|YP_004410527.1| - 0.042 13.5 0.1 0.18 11.4 0.1 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase MobB PF03205.9 gi|330835799|ref|YP_004410527.1| - 0.043 13.5 0.8 0.085 12.5 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CPT PF07931.7 gi|330835799|ref|YP_004410527.1| - 0.061 12.9 0.5 0.59 9.7 0.2 2.2 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein NB-ARC PF00931.17 gi|330835799|ref|YP_004410527.1| - 0.063 12.1 0.2 0.1 11.4 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.10 gi|330835799|ref|YP_004410527.1| - 0.07 12.8 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 NTPase CbiA PF01656.18 gi|330835799|ref|YP_004410527.1| - 0.095 12.0 2.1 0.16 11.3 0.4 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|330835799|ref|YP_004410527.1| - 0.12 11.7 0.3 0.22 10.9 0.2 1.3 1 0 0 1 1 1 0 AAA-like domain cobW PF02492.14 gi|330835799|ref|YP_004410527.1| - 0.13 11.6 0.4 0.49 9.8 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.1 gi|330835799|ref|YP_004410527.1| - 0.44 10.4 6.6 4.5 7.1 4.5 2.1 1 1 0 1 1 1 0 AAA domain DUF106 PF01956.11 gi|330835800|ref|YP_004410528.1| - 0.0002 20.9 0.7 0.00027 20.4 0.5 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 UPF0114 PF03350.11 gi|330835800|ref|YP_004410528.1| - 0.05 13.5 3.8 0.066 13.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein family, UPF0114 DUF2512 PF10710.4 gi|330835800|ref|YP_004410528.1| - 0.1 12.0 0.2 0.1 12.0 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) Nucleoside_tran PF01733.13 gi|330835800|ref|YP_004410528.1| - 0.16 11.1 3.6 0.18 10.8 2.5 1.0 1 0 0 1 1 1 0 Nucleoside transporter ABC2_membrane_2 PF12679.2 gi|330835800|ref|YP_004410528.1| - 1 8.1 5.2 1.4 7.6 3.5 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2718 PF10918.3 gi|330835800|ref|YP_004410528.1| - 3 7.9 6.0 3.1 7.8 3.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2718) Vpu PF00558.14 gi|330835800|ref|YP_004410528.1| - 3 7.4 5.5 0.42 10.2 1.0 1.7 2 1 0 2 2 2 0 Vpu protein HemY_N PF07219.8 gi|330835800|ref|YP_004410528.1| - 9.1 5.8 8.1 4.2 6.9 0.7 2.3 1 1 1 2 2 2 0 HemY protein N-terminus AAA_18 PF13238.1 gi|330835801|ref|YP_004410529.1| - 2.9e-10 40.5 0.1 3.6e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.12 gi|330835801|ref|YP_004410529.1| - 7.7e-06 25.4 0.1 0.11 11.9 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_17 PF13207.1 gi|330835801|ref|YP_004410529.1| - 1.2e-05 26.0 0.1 1.8e-05 25.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|330835801|ref|YP_004410529.1| - 0.00011 21.5 0.0 0.00016 21.0 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_19 PF13245.1 gi|330835801|ref|YP_004410529.1| - 0.001 18.7 0.0 0.0027 17.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain NTPase_1 PF03266.10 gi|330835801|ref|YP_004410529.1| - 0.001 18.8 0.3 0.002 17.8 0.2 1.4 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.1 gi|330835801|ref|YP_004410529.1| - 0.0011 19.0 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|330835801|ref|YP_004410529.1| - 0.0025 16.8 0.0 0.0031 16.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|330835801|ref|YP_004410529.1| - 0.0031 17.4 0.0 0.0057 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|330835801|ref|YP_004410529.1| - 0.0032 17.3 0.1 0.0051 16.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|330835801|ref|YP_004410529.1| - 0.0036 17.4 0.0 0.0061 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain PRK PF00485.13 gi|330835801|ref|YP_004410529.1| - 0.0054 16.3 0.0 0.0089 15.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family SRP54 PF00448.17 gi|330835801|ref|YP_004410529.1| - 0.013 14.9 0.0 0.027 13.9 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|330835801|ref|YP_004410529.1| - 0.013 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|330835801|ref|YP_004410529.1| - 0.014 15.6 0.0 0.028 14.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|330835801|ref|YP_004410529.1| - 0.014 15.1 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.12 gi|330835801|ref|YP_004410529.1| - 0.017 14.7 0.1 0.025 14.1 0.1 1.5 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein Arch_ATPase PF01637.13 gi|330835801|ref|YP_004410529.1| - 0.02 14.5 0.1 0.034 13.8 0.1 1.3 1 0 0 1 1 1 0 Archaeal ATPase cobW PF02492.14 gi|330835801|ref|YP_004410529.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ArgK PF03308.11 gi|330835801|ref|YP_004410529.1| - 0.046 12.4 0.0 0.07 11.9 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SKI PF01202.17 gi|330835801|ref|YP_004410529.1| - 0.048 13.5 0.2 0.33 10.8 0.0 2.2 2 1 1 3 3 3 0 Shikimate kinase MMR_HSR1 PF01926.18 gi|330835801|ref|YP_004410529.1| - 0.05 13.5 0.2 0.07 13.0 0.1 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.1 gi|330835801|ref|YP_004410529.1| - 0.055 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|330835801|ref|YP_004410529.1| - 0.13 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SecY PF00344.15 gi|330835802|ref|YP_004410530.1| - 4.3e-78 262.6 31.6 5.5e-78 262.3 21.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|330835802|ref|YP_004410530.1| - 4.4e-10 38.8 1.4 1.4e-09 37.2 0.5 2.4 2 0 0 2 2 2 1 Plug domain of Sec61p SK_channel PF03530.9 gi|330835802|ref|YP_004410530.1| - 7.5 6.4 8.0 13 5.6 0.3 3.3 3 1 0 3 3 3 0 Calcium-activated SK potassium channel Ribosomal_L18e PF00828.14 gi|330835803|ref|YP_004410531.1| - 8.9e-30 103.7 3.2 8.9e-30 103.7 2.2 1.3 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 DUF3785 PF12653.2 gi|330835803|ref|YP_004410531.1| - 0.062 13.1 0.0 0.75 9.6 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3785) Ribosomal_L30 PF00327.15 gi|330835804|ref|YP_004410532.1| - 9.1e-13 47.5 0.0 1.4e-12 46.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5_C PF03719.10 gi|330835805|ref|YP_004410533.1| - 1.6e-21 75.3 0.0 2.7e-21 74.6 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.15 gi|330835805|ref|YP_004410533.1| - 8.5e-20 70.2 1.1 1.5e-19 69.4 0.8 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_L18p PF00861.17 gi|330835806|ref|YP_004410534.1| - 4.2e-30 104.3 0.4 8.4e-30 103.4 0.1 1.5 2 0 0 2 2 2 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|330835806|ref|YP_004410534.1| - 2.6e-15 56.7 0.0 4.7e-15 55.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L19e PF01280.15 gi|330835807|ref|YP_004410535.1| - 9.5e-46 155.2 15.0 1.1e-45 155.0 10.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.13 gi|330835808|ref|YP_004410536.1| - 4.3e-37 126.5 0.3 5.9e-37 126.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.18 gi|330835809|ref|YP_004410537.1| - 9.6e-29 99.7 5.2 1.6e-15 57.3 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_beta PF00712.14 gi|330835809|ref|YP_004410537.1| - 0.0063 16.4 1.1 1.8 8.4 0.1 2.3 2 0 0 2 2 2 2 DNA polymerase III beta subunit, N-terminal domain HSP20 PF00011.16 gi|330835809|ref|YP_004410537.1| - 0.053 13.3 2.4 5.8 6.8 0.1 2.8 3 1 0 3 3 3 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.14 gi|330835810|ref|YP_004410538.1| - 6.4e-25 87.4 0.1 8.4e-25 87.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 DUF498 PF04430.9 gi|330835810|ref|YP_004410538.1| - 0.039 13.5 0.0 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF498/DUF598) Ribosomal_S14 PF00253.16 gi|330835811|ref|YP_004410539.1| - 7.6e-17 60.4 3.3 8.7e-17 60.2 2.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.14 gi|330835811|ref|YP_004410539.1| - 0.018 14.9 0.3 0.022 14.6 0.2 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-P11 PF03854.9 gi|330835811|ref|YP_004410539.1| - 0.065 12.7 0.7 0.091 12.2 0.5 1.2 1 0 0 1 1 1 0 P-11 zinc finger DZR PF12773.2 gi|330835811|ref|YP_004410539.1| - 0.087 12.6 0.9 0.15 11.9 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon RecR PF02132.10 gi|330835811|ref|YP_004410539.1| - 0.11 11.9 1.8 1.5 8.3 0.1 2.1 2 0 0 2 2 2 0 RecR protein Prim_Zn_Ribbon PF08273.7 gi|330835811|ref|YP_004410539.1| - 0.12 12.5 4.9 0.19 11.8 0.4 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.5 gi|330835811|ref|YP_004410539.1| - 0.15 11.5 2.9 0.22 11.0 2.0 1.2 1 0 0 1 1 1 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330835811|ref|YP_004410539.1| - 0.37 10.6 3.0 0.47 10.2 2.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-FPG_IleRS PF06827.9 gi|330835811|ref|YP_004410539.1| - 0.47 10.1 5.8 1.8 8.2 0.5 2.1 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS Zn_Tnp_IS1 PF03811.8 gi|330835811|ref|YP_004410539.1| - 4.9 6.7 6.6 92 2.6 4.3 2.3 1 1 0 1 1 1 0 InsA N-terminal domain Ribosomal_L5_C PF00673.16 gi|330835812|ref|YP_004410540.1| - 7.5e-26 89.6 0.0 1.4e-25 88.8 0.0 1.5 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|330835812|ref|YP_004410540.1| - 1.1e-21 76.3 0.2 2e-21 75.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.15 gi|330835813|ref|YP_004410541.1| - 3e-23 81.2 0.0 6e-23 80.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.20 gi|330835813|ref|YP_004410541.1| - 2.2e-10 39.8 0.1 4.2e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.7 gi|330835813|ref|YP_004410541.1| - 1.8e-08 34.1 2.7 3e-08 33.3 1.8 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.24 gi|330835813|ref|YP_004410541.1| - 0.0014 18.3 0.3 0.0035 17.0 0.2 1.8 1 0 0 1 1 1 1 KOW motif KOW PF00467.24 gi|330835814|ref|YP_004410542.1| - 1e-06 28.2 0.6 1e-06 28.2 0.4 2.1 2 0 0 2 2 2 1 KOW motif DUF4342 PF14242.1 gi|330835814|ref|YP_004410542.1| - 0.1 12.3 0.8 0.21 11.3 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) PAS PF00989.19 gi|330835814|ref|YP_004410542.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 PAS fold Ribosomal_L14 PF00238.14 gi|330835815|ref|YP_004410543.1| - 5.2e-37 126.3 0.0 5.8e-37 126.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.6 gi|330835815|ref|YP_004410543.1| - 0.13 12.3 0.0 0.18 11.9 0.0 1.4 1 1 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.15 gi|330835816|ref|YP_004410544.1| - 6.3e-16 58.1 0.9 8e-16 57.8 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Adeno_E4 PF05385.6 gi|330835816|ref|YP_004410544.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Mastadenovirus early E4 13 kDa protein UPF0086 PF01868.11 gi|330835817|ref|YP_004410545.1| - 6.6e-15 54.5 0.0 6.9e-15 54.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|330835818|ref|YP_004410546.1| - 1.7e-18 66.0 8.3 2e-18 65.8 5.7 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Phe_tRNA-synt_N PF02912.13 gi|330835818|ref|YP_004410546.1| - 0.014 15.1 1.1 0.014 15.1 0.7 1.8 2 1 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain BEN PF10523.4 gi|330835818|ref|YP_004410546.1| - 0.02 14.9 0.4 0.023 14.7 0.3 1.1 1 0 0 1 1 1 0 BEN domain DUF1192 PF06698.6 gi|330835818|ref|YP_004410546.1| - 0.098 12.4 7.7 1.1 9.0 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1192) DUF4549 PF15082.1 gi|330835818|ref|YP_004410546.1| - 0.12 11.9 0.6 0.13 11.8 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4549) DUF29 PF01724.11 gi|330835818|ref|YP_004410546.1| - 0.12 12.1 3.5 0.13 12.0 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF29 Peptidase_C12 PF01088.16 gi|330835818|ref|YP_004410546.1| - 0.19 10.9 1.3 0.2 10.8 0.9 1.0 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase, family 1 Erp_C PF06780.6 gi|330835818|ref|YP_004410546.1| - 1.3 8.8 6.5 1.4 8.7 4.5 1.1 1 0 0 1 1 1 0 Erp protein C-terminus DegQ PF08181.6 gi|330835818|ref|YP_004410546.1| - 4.7 7.0 6.1 2.2 8.0 2.3 1.9 2 1 0 2 2 2 0 DegQ (SacQ) family Ribosomal_S3_C PF00189.15 gi|330835819|ref|YP_004410547.1| - 3.8e-15 55.8 1.1 7.9e-15 54.8 0.8 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|330835819|ref|YP_004410547.1| - 2.8e-14 52.4 0.0 6.9e-14 51.1 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.1 gi|330835819|ref|YP_004410547.1| - 0.0062 16.1 0.3 0.015 14.9 0.0 1.9 2 0 0 2 2 2 1 KH domain FLgD_tudor PF13861.1 gi|330835819|ref|YP_004410547.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.7 1 1 0 1 1 1 0 FlgD Tudor-like domain Wzt_C PF14524.1 gi|330835819|ref|YP_004410547.1| - 0.16 11.6 0.7 0.3 10.7 0.5 1.4 1 0 0 1 1 1 0 Wzt C-terminal domain KH_3 PF13014.1 gi|330835819|ref|YP_004410547.1| - 0.22 11.2 2.0 0.46 10.1 0.5 2.3 2 0 0 2 2 2 0 KH domain KH_1 PF00013.24 gi|330835819|ref|YP_004410547.1| - 0.23 11.1 0.1 0.23 11.1 0.0 2.5 3 1 1 4 4 4 0 KH domain Ribosomal_L22 PF00237.14 gi|330835820|ref|YP_004410548.1| - 1.3e-34 118.2 0.8 1.5e-34 118.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e RteC PF09357.5 gi|330835820|ref|YP_004410548.1| - 0.058 13.2 0.0 0.087 12.6 0.0 1.2 1 0 0 1 1 1 0 RteC protein NmrA PF05368.8 gi|330835820|ref|YP_004410548.1| - 0.12 11.6 0.1 0.24 10.6 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family Ribosomal_S19 PF00203.16 gi|330835821|ref|YP_004410549.1| - 9.4e-25 86.0 0.2 1.3e-24 85.6 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.12 gi|330835821|ref|YP_004410549.1| - 0.11 12.7 1.1 0.2 11.9 0.8 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L2_C PF03947.13 gi|330835822|ref|YP_004410550.1| - 5.9e-37 126.3 0.7 9.1e-37 125.7 0.5 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|330835822|ref|YP_004410550.1| - 1.1e-11 44.5 0.0 3e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|330835823|ref|YP_004410551.1| - 1.2e-16 60.4 2.8 1.4e-16 60.1 2.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L23 Ribosomal_L4 PF00573.17 gi|330835824|ref|YP_004410552.1| - 2.4e-34 118.4 0.0 2.9e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|330835825|ref|YP_004410553.1| - 2.4e-55 187.7 0.0 2.8e-55 187.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Dicty_CAD PF05720.7 gi|330835825|ref|YP_004410553.1| - 0.017 14.7 0.8 0.046 13.3 0.0 2.1 3 0 0 3 3 3 0 Cell-cell adhesion domain Prefoldin_2 PF01920.15 gi|330835825|ref|YP_004410553.1| - 0.029 14.1 0.7 0.053 13.2 0.5 1.4 1 0 0 1 1 1 0 Prefoldin subunit Methyltrn_RNA_3 PF02598.12 gi|330835826|ref|YP_004410554.1| - 5.1e-14 52.3 0.7 3.7e-10 39.6 0.2 2.3 2 1 0 2 2 2 2 Putative RNA methyltransferase tRNA-synt_1 PF00133.17 gi|330835827|ref|YP_004410555.1| - 1.2e-180 601.5 0.5 1.6e-180 601.1 0.4 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|330835827|ref|YP_004410555.1| - 1.4e-23 83.3 2.3 3.4e-23 82.1 1.6 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|330835827|ref|YP_004410555.1| - 7.8e-22 77.4 0.1 3.3e-07 29.2 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|330835827|ref|YP_004410555.1| - 0.00017 20.9 0.0 0.00045 19.5 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.13 gi|330835827|ref|YP_004410555.1| - 0.00052 18.7 0.0 0.0011 17.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (K) Iso_dh PF00180.15 gi|330835828|ref|YP_004410556.1| - 7.3e-96 321.1 0.4 8.6e-96 320.9 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|330835828|ref|YP_004410556.1| - 0.022 13.9 0.0 0.064 12.4 0.0 1.7 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA C5-epim_C PF06662.8 gi|330835828|ref|YP_004410556.1| - 0.11 11.7 0.2 0.19 11.0 0.1 1.3 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus UVR PF02151.14 gi|330835828|ref|YP_004410556.1| - 0.67 9.5 2.5 0.74 9.4 0.5 2.0 2 0 0 2 2 2 0 UvrB/uvrC motif DUF447 PF04289.7 gi|330835829|ref|YP_004410557.1| - 1.9e-26 92.6 0.0 2.4e-26 92.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) HAD_2 PF13419.1 gi|330835831|ref|YP_004410559.1| - 3.8e-23 82.6 0.0 5.6e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|330835831|ref|YP_004410559.1| - 3.6e-15 56.9 0.0 2.2e-14 54.3 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|330835831|ref|YP_004410559.1| - 3.9e-11 42.5 0.0 7.6e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|330835831|ref|YP_004410559.1| - 1.5e-05 25.2 0.0 2.2e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|330835831|ref|YP_004410559.1| - 0.0024 17.7 0.0 0.059 13.2 0.0 2.7 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydant_A_N PF05378.8 gi|330835831|ref|YP_004410559.1| - 0.069 12.6 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase N-terminal region GTP_EFTU PF00009.22 gi|330835832|ref|YP_004410560.1| - 2.5e-57 193.3 0.2 4.2e-57 192.6 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|330835832|ref|YP_004410560.1| - 5e-33 113.2 0.1 3.3e-32 110.5 0.0 2.5 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|330835832|ref|YP_004410560.1| - 1.9e-23 82.0 0.1 5.8e-23 80.5 0.0 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|330835832|ref|YP_004410560.1| - 1.4e-21 76.1 0.0 3.8e-21 74.7 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|330835832|ref|YP_004410560.1| - 3e-12 46.4 0.8 1.6e-11 44.1 0.0 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|330835832|ref|YP_004410560.1| - 0.00037 20.4 0.1 0.00091 19.1 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|330835832|ref|YP_004410560.1| - 0.069 12.3 0.0 0.26 10.4 0.0 2.0 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ERCC4 PF02732.10 gi|330835833|ref|YP_004410561.1| - 1.3e-24 86.6 0.1 2e-24 85.9 0.1 1.3 1 0 0 1 1 1 1 ERCC4 domain 5_3_exonuc PF01367.15 gi|330835833|ref|YP_004410561.1| - 0.00042 20.5 0.1 0.0014 18.8 0.0 1.9 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.2 gi|330835833|ref|YP_004410561.1| - 0.0043 16.9 0.0 0.016 15.0 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif PSD2 PF07624.6 gi|330835833|ref|YP_004410561.1| - 0.08 12.6 0.0 0.27 10.8 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1585) HHH_5 PF14520.1 gi|330835833|ref|YP_004410561.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix domain Prefoldin_2 PF01920.15 gi|330835834|ref|YP_004410562.1| - 4.2e-23 81.1 18.0 4.8e-23 80.9 12.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit UBN2 PF14223.1 gi|330835834|ref|YP_004410562.1| - 0.0017 18.1 4.7 0.17 11.7 0.4 2.1 1 1 1 2 2 2 2 gag-polypeptide of LTR copia-type UPF0449 PF15136.1 gi|330835834|ref|YP_004410562.1| - 0.0099 16.0 1.4 0.0099 16.0 1.0 1.9 1 1 1 2 2 2 1 Uncharacterised protein family UPF0449 Laminin_II PF06009.7 gi|330835834|ref|YP_004410562.1| - 0.026 14.2 7.1 0.12 12.1 0.2 2.1 1 1 1 2 2 2 0 Laminin Domain II TRF PF08558.5 gi|330835834|ref|YP_004410562.1| - 0.027 13.7 3.3 0.034 13.4 2.3 1.0 1 0 0 1 1 1 0 Telomere repeat binding factor (TRF) DUF77 PF01910.12 gi|330835834|ref|YP_004410562.1| - 0.065 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF77 Snf7 PF03357.16 gi|330835834|ref|YP_004410562.1| - 0.069 12.5 6.4 0.34 10.2 0.1 2.1 2 0 0 2 2 2 0 Snf7 Thiol_cytolysin PF01289.14 gi|330835834|ref|YP_004410562.1| - 0.094 11.0 0.0 0.12 10.7 0.0 1.1 1 0 0 1 1 1 0 Thiol-activated cytolysin TPR_MLP1_2 PF07926.7 gi|330835834|ref|YP_004410562.1| - 0.13 12.0 10.8 0.39 10.4 3.4 2.0 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Mnd1 PF03962.10 gi|330835834|ref|YP_004410562.1| - 0.28 10.8 7.5 0.38 10.3 5.2 1.2 1 0 0 1 1 1 0 Mnd1 family MerR-DNA-bind PF09278.6 gi|330835834|ref|YP_004410562.1| - 0.37 11.2 8.8 0.83 10.1 0.7 2.6 3 0 0 3 3 3 0 MerR, DNA binding Imm3 PF14425.1 gi|330835834|ref|YP_004410562.1| - 0.72 9.8 9.5 0.68 9.9 2.0 2.0 1 1 1 2 2 2 0 Immunity protein Imm3 Nup54 PF13874.1 gi|330835834|ref|YP_004410562.1| - 0.72 9.5 10.7 0.24 11.0 3.8 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 FliD_C PF07195.7 gi|330835834|ref|YP_004410562.1| - 1 8.6 5.2 1.4 8.1 3.2 1.6 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus ASL_C PF08328.6 gi|330835834|ref|YP_004410562.1| - 1.1 9.1 4.0 7.2 6.4 2.8 2.0 1 1 0 1 1 1 0 Adenylosuccinate lyase C-terminal ADIP PF11559.3 gi|330835834|ref|YP_004410562.1| - 1.4 8.8 14.9 2.1 8.2 1.6 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding HemX PF04375.9 gi|330835834|ref|YP_004410562.1| - 1.6 7.2 6.9 2.7 6.5 1.9 2.0 2 0 0 2 2 2 0 HemX Cortex-I_coil PF09304.5 gi|330835834|ref|YP_004410562.1| - 2.3 8.3 9.5 2.7 8.0 2.4 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil CCDC144C PF14915.1 gi|330835834|ref|YP_004410562.1| - 2.8 6.7 14.8 19 4.0 10.3 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region YvrJ PF12841.2 gi|330835834|ref|YP_004410562.1| - 2.9 7.2 4.9 42 3.5 0.0 3.6 4 0 0 4 4 4 0 YvrJ protein family MbeD_MobD PF04899.7 gi|330835834|ref|YP_004410562.1| - 3.3 7.6 7.6 3.2 7.7 0.6 2.4 2 0 0 2 2 2 0 MbeD/MobD like MscS_porin PF12795.2 gi|330835834|ref|YP_004410562.1| - 3.7 6.7 17.6 12 5.1 12.2 1.7 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain DASH_Dad2 PF08654.5 gi|330835834|ref|YP_004410562.1| - 3.7 7.5 6.4 7.6 6.5 0.3 2.2 1 1 1 2 2 2 0 DASH complex subunit Dad2 FlxA PF14282.1 gi|330835834|ref|YP_004410562.1| - 6.8 6.6 11.1 14 5.7 2.7 2.3 2 0 0 2 2 2 0 FlxA-like protein NPV_P10 PF05531.7 gi|330835834|ref|YP_004410562.1| - 8 6.7 7.2 3.2 8.0 0.6 2.5 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Rootletin PF15035.1 gi|330835834|ref|YP_004410562.1| - 9.2 6.2 14.4 1.7e+02 2.0 9.9 2.0 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF3552 PF12072.3 gi|330835834|ref|YP_004410562.1| - 9.8 5.3 13.0 0.47 9.6 3.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) zf-Sec23_Sec24 PF04810.10 gi|330835835|ref|YP_004410563.1| - 0.04 13.4 0.2 0.057 12.9 0.1 1.3 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger Ribosomal_L37ae PF01780.14 gi|330835836|ref|YP_004410564.1| - 1.2e-23 82.7 3.8 1.4e-23 82.5 2.7 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.2 gi|330835836|ref|YP_004410564.1| - 6.8e-05 22.5 2.3 8.7e-05 22.2 1.6 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|330835836|ref|YP_004410564.1| - 9.1e-05 22.0 1.0 0.00012 21.6 0.7 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF4379 PF14311.1 gi|330835836|ref|YP_004410564.1| - 0.0037 17.0 4.5 0.21 11.4 0.4 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4379) TF_Zn_Ribbon PF08271.7 gi|330835836|ref|YP_004410564.1| - 0.009 15.3 0.1 0.013 14.7 0.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DUF721 PF05258.7 gi|330835836|ref|YP_004410564.1| - 0.014 15.6 0.0 0.017 15.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF721) DUF1610 PF07754.6 gi|330835836|ref|YP_004410564.1| - 0.02 15.0 2.9 0.39 10.8 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CpXC PF14353.1 gi|330835836|ref|YP_004410564.1| - 0.025 14.5 0.3 0.52 10.2 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|330835836|ref|YP_004410564.1| - 0.032 14.1 3.0 0.39 10.6 0.2 2.3 2 1 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|330835836|ref|YP_004410564.1| - 0.042 13.5 1.0 0.31 10.7 0.1 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) A2L_zn_ribbon PF08792.5 gi|330835836|ref|YP_004410564.1| - 0.056 12.9 1.1 0.13 11.7 0.7 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain Rep_fac-A_C PF08646.5 gi|330835836|ref|YP_004410564.1| - 0.076 12.7 1.7 0.088 12.5 1.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Tnp_zf-ribbon_2 PF13842.1 gi|330835836|ref|YP_004410564.1| - 0.079 13.3 0.6 13 6.2 0.0 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-TFIIB PF13453.1 gi|330835836|ref|YP_004410564.1| - 0.093 11.9 0.7 0.15 11.3 0.5 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger DUF4428 PF14471.1 gi|330835836|ref|YP_004410564.1| - 0.11 12.2 0.2 0.17 11.6 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) zf-HIT PF04438.11 gi|330835836|ref|YP_004410564.1| - 0.17 11.5 1.6 5 6.8 0.2 2.3 2 0 0 2 2 2 0 HIT zinc finger DZR PF12773.2 gi|330835836|ref|YP_004410564.1| - 0.18 11.6 1.8 0.45 10.3 1.2 1.8 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.15 gi|330835836|ref|YP_004410564.1| - 0.47 10.3 2.8 6.2 6.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin Auto_anti-p27 PF06677.7 gi|330835836|ref|YP_004410564.1| - 1.2 8.9 3.8 2.6 7.8 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TFIIS_C PF01096.13 gi|330835836|ref|YP_004410564.1| - 1.4 8.5 5.6 6 6.5 0.8 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.1 gi|330835836|ref|YP_004410564.1| - 2 8.1 4.9 18 5.1 1.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|330835836|ref|YP_004410564.1| - 2.7 7.1 6.9 1.8 7.7 0.8 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zinc_ribbon_5 PF13719.1 gi|330835836|ref|YP_004410564.1| - 5.4 6.6 6.3 8.1 6.1 0.5 2.3 2 1 0 2 2 2 0 zinc-ribbon domain RNase_PH PF01138.16 gi|330835837|ref|YP_004410565.1| - 2.4e-31 108.7 0.0 9.3e-31 106.8 0.0 1.8 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|330835837|ref|YP_004410565.1| - 8.1e-09 35.2 0.0 4.1e-08 33.0 0.0 2.2 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.16 gi|330835838|ref|YP_004410566.1| - 1.2e-36 125.9 0.0 1.6e-36 125.5 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|330835838|ref|YP_004410566.1| - 6.9e-14 51.5 0.0 1.4e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 DUF4192 PF13830.1 gi|330835838|ref|YP_004410566.1| - 0.0027 17.4 0.4 0.0036 17.0 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4192) S1 PF00575.18 gi|330835839|ref|YP_004410567.1| - 9.6e-07 28.8 0.0 2.4e-06 27.5 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain KH_1 PF00013.24 gi|330835839|ref|YP_004410567.1| - 1.7e-05 24.3 0.3 6.9e-05 22.4 0.2 2.0 1 1 1 2 2 2 1 KH domain KH_3 PF13014.1 gi|330835839|ref|YP_004410567.1| - 0.026 14.1 0.4 0.3 10.7 0.0 2.9 3 1 1 4 4 4 0 KH domain SBDS PF01172.13 gi|330835840|ref|YP_004410568.1| - 2.9e-26 91.0 0.4 5.2e-26 90.2 0.3 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|330835840|ref|YP_004410568.1| - 2.1e-21 75.8 1.9 3.2e-21 75.3 1.3 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.19 gi|330835840|ref|YP_004410568.1| - 0.0034 17.2 0.0 0.012 15.4 0.0 1.9 2 0 0 2 2 2 1 Elongation factor G C-terminus UPF0262 PF06793.7 gi|330835840|ref|YP_004410568.1| - 0.081 12.6 0.1 0.13 12.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0262) Proteasome PF00227.21 gi|330835841|ref|YP_004410569.1| - 9.2e-59 197.9 0.0 1.3e-58 197.4 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|330835841|ref|YP_004410569.1| - 3.1e-13 48.7 0.7 1.1e-12 47.0 0.3 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature CAT_RBD PF03123.10 gi|330835841|ref|YP_004410569.1| - 0.054 13.1 0.1 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 CAT RNA binding domain RNase_P_Rpp14 PF01900.14 gi|330835842|ref|YP_004410570.1| - 1.3e-12 47.5 0.0 1.4e-12 47.4 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family RNA_binding PF01877.12 gi|330835843|ref|YP_004410571.1| - 5.5e-28 97.3 0.5 7e-28 97.0 0.3 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.12 gi|330835844|ref|YP_004410572.1| - 3e-69 232.3 8.6 3.9e-69 232.0 5.9 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.5 gi|330835845|ref|YP_004410573.1| - 1.4e-35 121.7 0.1 2.3e-35 121.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|330835845|ref|YP_004410573.1| - 7.6e-18 64.5 0.0 2.2e-17 63.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|330835845|ref|YP_004410573.1| - 1.7e-13 50.1 0.0 3e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|330835845|ref|YP_004410573.1| - 4e-06 26.1 0.1 6.5e-05 22.2 0.0 2.7 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.8 gi|330835845|ref|YP_004410573.1| - 0.0015 18.2 1.5 0.67 9.7 0.1 3.1 3 1 0 3 3 3 1 Protein of unknown function (DUF933) Hexapep PF00132.19 gi|330835846|ref|YP_004410574.1| - 2.2e-27 93.2 21.2 1.7e-09 36.7 0.2 4.3 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.18 gi|330835846|ref|YP_004410574.1| - 4.2e-23 81.9 0.0 5.3e-23 81.5 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.1 gi|330835846|ref|YP_004410574.1| - 1e-10 40.9 7.8 2e-05 24.0 0.0 3.5 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.2 gi|330835846|ref|YP_004410574.1| - 4.7e-08 33.2 0.0 6.9e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|330835846|ref|YP_004410574.1| - 0.00063 19.3 0.0 0.00092 18.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ribosomal_S3Ae PF01015.13 gi|330835847|ref|YP_004410575.1| - 3.1e-71 238.7 1.2 3.9e-71 238.4 0.8 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family SpoU_methylase PF00588.14 gi|330835848|ref|YP_004410576.1| - 7.9e-31 106.8 0.0 1e-30 106.4 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|330835848|ref|YP_004410576.1| - 1.2e-06 28.1 0.0 0.00012 21.6 0.0 2.3 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase MTS PF05175.9 gi|330835849|ref|YP_004410577.1| - 3.3e-14 52.6 0.0 4.4e-14 52.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|330835849|ref|YP_004410577.1| - 4.7e-13 49.1 0.0 5.9e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|330835849|ref|YP_004410577.1| - 4.5e-11 42.4 0.2 6.6e-11 41.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|330835849|ref|YP_004410577.1| - 7.1e-07 29.8 0.0 9.6e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|330835849|ref|YP_004410577.1| - 1e-06 28.4 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|330835849|ref|YP_004410577.1| - 1.9e-06 27.5 0.0 2.2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|330835849|ref|YP_004410577.1| - 5.7e-06 26.0 0.0 8.5e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.1 gi|330835849|ref|YP_004410577.1| - 6.2e-05 22.7 0.0 7.4e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|330835849|ref|YP_004410577.1| - 0.00032 20.1 0.0 0.00055 19.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.4 gi|330835849|ref|YP_004410577.1| - 0.00059 19.3 0.2 0.0011 18.4 0.1 1.5 2 0 0 2 2 2 1 Putative methyltransferase N6_N4_Mtase PF01555.13 gi|330835849|ref|YP_004410577.1| - 0.00095 18.7 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.7 gi|330835849|ref|YP_004410577.1| - 0.0052 17.2 0.0 0.0085 16.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|330835849|ref|YP_004410577.1| - 0.0064 15.6 0.0 0.056 12.5 0.0 2.0 1 1 0 1 1 1 1 N-6 DNA Methylase CMAS PF02353.15 gi|330835849|ref|YP_004410577.1| - 0.011 14.8 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_15 PF09445.5 gi|330835849|ref|YP_004410577.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MethyltransfD12 PF02086.10 gi|330835849|ref|YP_004410577.1| - 0.022 14.2 0.0 3.6 6.9 0.0 2.5 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_25 PF13649.1 gi|330835849|ref|YP_004410577.1| - 0.037 14.3 0.0 0.065 13.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|330835849|ref|YP_004410577.1| - 0.038 13.6 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.7 gi|330835849|ref|YP_004410577.1| - 0.047 13.0 0.0 0.066 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF3419 PF11899.3 gi|330835849|ref|YP_004410577.1| - 0.093 11.4 0.0 0.13 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) GidB PF02527.10 gi|330835849|ref|YP_004410577.1| - 0.11 11.5 0.1 0.21 10.7 0.0 1.6 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G RrnaAD PF00398.15 gi|330835850|ref|YP_004410578.1| - 1.1e-22 80.3 0.0 1.4e-22 80.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase DUF655 PF04919.7 gi|330835851|ref|YP_004410579.1| - 3.1e-55 186.6 3.7 3.7e-55 186.4 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|330835851|ref|YP_004410579.1| - 0.002 18.1 0.1 0.016 15.2 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif RNA_pol_Rpb4 PF03874.11 gi|330835852|ref|YP_004410580.1| - 3.7e-16 59.1 2.9 4.2e-16 58.9 2.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 ATP-gua_Ptrans PF00217.14 gi|330835852|ref|YP_004410580.1| - 0.063 12.5 0.1 0.079 12.2 0.1 1.1 1 0 0 1 1 1 0 ATP:guanido phosphotransferase, C-terminal catalytic domain DUF3714 PF12508.3 gi|330835852|ref|YP_004410580.1| - 0.086 12.2 0.1 0.11 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3714) DUF3775 PF12616.3 gi|330835852|ref|YP_004410580.1| - 0.092 12.5 0.0 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3775) DNA_primase_lrg PF04104.9 gi|330835852|ref|YP_004410580.1| - 0.1 11.8 0.4 8.7 5.5 0.1 2.0 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit Ribosomal_L21e PF01157.13 gi|330835853|ref|YP_004410581.1| - 2.1e-23 81.9 1.2 2.3e-23 81.8 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e DUF104 PF01954.11 gi|330835853|ref|YP_004410581.1| - 0.023 14.7 0.7 0.43 10.6 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF104 LSM PF01423.17 gi|330835854|ref|YP_004410582.1| - 4.4e-22 77.4 1.1 4.9e-22 77.2 0.8 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|330835854|ref|YP_004410582.1| - 0.011 15.6 0.1 0.016 15.1 0.1 1.2 1 0 0 1 1 1 0 Ataxin 2 SM domain YfmQ PF10787.4 gi|330835854|ref|YP_004410582.1| - 0.081 12.2 0.0 0.086 12.1 0.0 1.2 1 1 0 1 1 1 0 Uncharacterised protein from bacillus cereus group Pirin_C PF05726.8 gi|330835854|ref|YP_004410582.1| - 0.11 12.6 0.1 0.11 12.5 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Ribosomal_L37e PF01907.14 gi|330835855|ref|YP_004410583.1| - 2.5e-25 88.0 11.5 2.8e-25 87.8 8.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Stc1 PF12898.2 gi|330835855|ref|YP_004410583.1| - 0.0017 18.4 0.6 0.0018 18.3 0.4 1.1 1 0 0 1 1 1 1 Stc1 domain IGFL PF14653.1 gi|330835855|ref|YP_004410583.1| - 0.0022 17.9 1.3 0.0023 17.8 0.9 1.2 1 0 0 1 1 1 1 Insulin growth factor-like family GCC2_GCC3 PF07699.8 gi|330835855|ref|YP_004410583.1| - 0.0029 17.1 2.5 0.0036 16.8 1.7 1.3 1 0 0 1 1 1 1 GCC2 and GCC3 DZR PF12773.2 gi|330835855|ref|YP_004410583.1| - 0.021 14.6 1.4 0.027 14.2 0.9 1.2 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|330835855|ref|YP_004410583.1| - 0.053 13.1 2.1 0.064 12.9 1.5 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|330835855|ref|YP_004410583.1| - 0.11 12.2 0.5 0.12 12.0 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_6 PF14599.1 gi|330835855|ref|YP_004410583.1| - 0.11 12.2 0.6 0.16 11.7 0.4 1.3 1 0 0 1 1 1 0 Zinc-ribbon zf-ribbon_3 PF13248.1 gi|330835855|ref|YP_004410583.1| - 0.13 11.5 3.4 0.22 10.7 2.4 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|330835855|ref|YP_004410583.1| - 0.26 10.9 4.0 1.4 8.6 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330835855|ref|YP_004410583.1| - 0.29 11.1 2.4 5.2 7.1 0.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|330835855|ref|YP_004410583.1| - 0.36 10.4 4.0 1.7 8.3 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HIT PF04438.11 gi|330835855|ref|YP_004410583.1| - 0.41 10.3 4.5 3.6 7.3 0.4 2.2 2 0 0 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|330835855|ref|YP_004410583.1| - 0.65 9.5 7.9 0.27 10.7 0.9 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C3HC4 PF00097.20 gi|330835855|ref|YP_004410583.1| - 0.78 9.4 3.5 1.1 8.9 2.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn_Tnp_IS1595 PF12760.2 gi|330835855|ref|YP_004410583.1| - 3.4 7.5 8.1 5 7.0 4.4 1.8 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Spermine_synth PF01564.12 gi|330835856|ref|YP_004410584.1| - 1.5e-62 210.7 0.0 1.9e-62 210.4 0.0 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_18 PF12847.2 gi|330835856|ref|YP_004410584.1| - 7.4e-07 29.7 0.0 1.3e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|330835856|ref|YP_004410584.1| - 6.7e-06 26.1 0.0 9.9e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain AAA_31 PF13614.1 gi|330835856|ref|YP_004410584.1| - 7.6e-06 25.9 0.0 4.1e-05 23.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain Methyltransf_25 PF13649.1 gi|330835856|ref|YP_004410584.1| - 2.2e-05 24.7 0.0 4.7e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|330835856|ref|YP_004410584.1| - 2.6e-05 24.6 0.0 4.6e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|330835856|ref|YP_004410584.1| - 0.00062 19.3 0.0 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|330835856|ref|YP_004410584.1| - 0.0074 15.9 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.15 gi|330835856|ref|YP_004410584.1| - 0.014 14.4 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.13 gi|330835856|ref|YP_004410584.1| - 0.015 14.4 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase MTS PF05175.9 gi|330835856|ref|YP_004410584.1| - 0.016 14.6 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF43 PF01861.11 gi|330835856|ref|YP_004410584.1| - 0.016 14.1 0.0 0.023 13.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF43 Methyltransf_5 PF01795.14 gi|330835856|ref|YP_004410584.1| - 0.023 14.0 0.0 0.08 12.1 0.0 1.8 2 0 0 2 2 2 0 MraW methylase family Sec5 PF15469.1 gi|330835856|ref|YP_004410584.1| - 0.041 13.6 0.7 3.1 7.4 0.1 3.0 1 1 1 2 2 2 0 Exocyst complex component Sec5 Methyltransf_11 PF08241.7 gi|330835856|ref|YP_004410584.1| - 0.068 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain ArsB PF02040.10 gi|330835858|ref|YP_004410586.1| - 9.1e-141 469.6 39.5 1.1e-140 469.4 27.4 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.11 gi|330835858|ref|YP_004410586.1| - 1.4e-18 66.5 32.0 1.4e-18 66.5 22.2 1.3 1 1 0 1 1 1 1 Citrate transporter Beta-Casp PF10996.3 gi|330835859|ref|YP_004410587.1| - 3.5e-32 110.9 0.0 1.1e-31 109.3 0.0 1.9 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|330835859|ref|YP_004410587.1| - 4.1e-23 82.0 0.3 7.1e-23 81.2 0.2 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|330835859|ref|YP_004410587.1| - 3.4e-12 46.2 0.0 2.7e-11 43.4 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|330835859|ref|YP_004410587.1| - 2.5e-10 39.9 0.0 2e-09 37.0 0.0 2.6 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase KH_2 PF07650.12 gi|330835859|ref|YP_004410587.1| - 0.00023 20.6 10.4 0.001 18.5 0.2 3.1 2 1 1 3 3 3 2 KH domain Lactamase_B_3 PF13483.1 gi|330835859|ref|YP_004410587.1| - 0.0014 18.3 0.0 0.0037 16.9 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Fe-ADH_2 PF13685.1 gi|330835860|ref|YP_004410588.1| - 7.6e-66 221.9 0.0 9.4e-66 221.6 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|330835860|ref|YP_004410588.1| - 1.8e-27 95.9 0.2 6.4e-27 94.1 0.2 1.7 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|330835860|ref|YP_004410588.1| - 3.7e-11 42.4 0.1 6.3e-10 38.4 0.1 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase FKBP_C PF00254.23 gi|330835861|ref|YP_004410589.1| - 6.2e-12 45.3 0.0 1.5e-11 44.1 0.0 1.7 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase AdoHcyase PF05221.12 gi|330835862|ref|YP_004410590.1| - 2.7e-68 229.8 0.1 3.2e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|330835862|ref|YP_004410590.1| - 2.5e-55 186.7 0.8 3.8e-55 186.1 0.6 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|330835862|ref|YP_004410590.1| - 5e-08 32.2 0.5 9.2e-08 31.4 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|330835862|ref|YP_004410590.1| - 5.8e-07 29.0 0.1 1.4e-06 27.8 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|330835862|ref|YP_004410590.1| - 5e-05 23.2 0.1 0.00014 21.8 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.14 gi|330835862|ref|YP_004410590.1| - 0.0049 15.9 1.1 0.021 13.9 0.8 1.9 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.9 gi|330835862|ref|YP_004410590.1| - 0.021 14.7 0.2 0.039 13.8 0.2 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|330835862|ref|YP_004410590.1| - 0.035 14.5 0.6 0.091 13.2 0.1 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|330835862|ref|YP_004410590.1| - 0.078 12.5 0.6 0.37 10.3 0.2 2.0 1 1 1 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|330835862|ref|YP_004410590.1| - 0.089 13.2 1.1 0.24 11.8 0.4 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.15 gi|330835862|ref|YP_004410590.1| - 0.1 12.6 0.5 0.3 11.1 0.3 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ABC_tran PF00005.22 gi|330835863|ref|YP_004410591.1| - 4.6e-43 146.8 0.6 3.1e-20 72.8 0.1 2.6 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.14 gi|330835863|ref|YP_004410591.1| - 5.4e-14 51.9 8.2 1.4e-07 31.0 2.1 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|330835863|ref|YP_004410591.1| - 9.2e-14 50.7 1.3 2.2e-13 49.4 0.9 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.1 gi|330835863|ref|YP_004410591.1| - 8.9e-12 45.5 18.9 6.2e-06 26.3 3.3 4.9 2 2 1 4 4 4 2 AAA domain AAA_15 PF13175.1 gi|330835863|ref|YP_004410591.1| - 8.8e-08 31.6 17.6 0.011 14.7 2.6 4.6 3 2 0 4 4 4 2 AAA ATPase domain AAA_17 PF13207.1 gi|330835863|ref|YP_004410591.1| - 6.5e-07 30.1 4.4 0.045 14.5 0.0 3.6 3 1 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|330835863|ref|YP_004410591.1| - 8.2e-07 28.3 0.8 0.012 14.8 0.0 3.2 3 0 0 3 3 3 2 Protein of unknown function, DUF258 Fer4 PF00037.22 gi|330835863|ref|YP_004410591.1| - 1.1e-06 27.9 5.0 1.1e-06 27.9 3.4 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain Fer4_21 PF14697.1 gi|330835863|ref|YP_004410591.1| - 8.5e-06 25.5 8.9 1.5e-05 24.7 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain MobB PF03205.9 gi|330835863|ref|YP_004410591.1| - 2e-05 24.3 1.5 0.016 14.8 0.0 2.7 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|330835863|ref|YP_004410591.1| - 2.2e-05 24.8 14.9 0.0082 16.4 4.5 2.9 1 1 1 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|330835863|ref|YP_004410591.1| - 2.7e-05 23.7 1.3 0.26 10.9 0.1 2.8 2 1 1 3 3 3 2 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|330835863|ref|YP_004410591.1| - 5.8e-05 23.1 0.4 0.0042 17.1 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|330835863|ref|YP_004410591.1| - 5.8e-05 23.2 0.3 0.28 11.3 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Fer4_6 PF12837.2 gi|330835863|ref|YP_004410591.1| - 6e-05 22.7 14.1 0.0013 18.4 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_29 PF13555.1 gi|330835863|ref|YP_004410591.1| - 6.7e-05 22.3 0.9 0.089 12.3 0.1 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|330835863|ref|YP_004410591.1| - 8.4e-05 22.4 0.0 0.33 10.9 0.0 3.0 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|330835863|ref|YP_004410591.1| - 0.00014 21.2 0.1 0.77 9.1 0.0 3.1 4 0 0 4 4 3 2 AAA domain Fer4_7 PF12838.2 gi|330835863|ref|YP_004410591.1| - 0.00018 21.8 8.1 0.00033 20.9 5.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Miro PF08477.8 gi|330835863|ref|YP_004410591.1| - 0.00029 21.3 2.0 0.46 11.0 0.0 3.3 3 1 0 3 3 2 1 Miro-like protein Fer4_2 PF12797.2 gi|330835863|ref|YP_004410591.1| - 0.00044 19.9 3.5 0.00044 19.9 2.4 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain PRK PF00485.13 gi|330835863|ref|YP_004410591.1| - 0.00072 19.1 0.4 0.79 9.2 0.0 3.1 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|330835863|ref|YP_004410591.1| - 0.00091 18.9 2.0 0.44 10.1 0.0 3.0 3 1 0 3 3 2 1 NACHT domain NB-ARC PF00931.17 gi|330835863|ref|YP_004410591.1| - 0.00098 18.0 4.1 0.23 10.2 0.1 2.9 3 0 0 3 3 3 2 NB-ARC domain RNA_helicase PF00910.17 gi|330835863|ref|YP_004410591.1| - 0.0011 19.0 0.4 1.6 8.9 0.0 3.0 3 0 0 3 3 2 1 RNA helicase Fer4_10 PF13237.1 gi|330835863|ref|YP_004410591.1| - 0.0013 18.4 11.4 0.0018 18.0 1.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_22 PF13401.1 gi|330835863|ref|YP_004410591.1| - 0.0022 18.1 5.6 0.095 12.8 0.0 3.3 3 1 0 3 3 2 1 AAA domain Rad17 PF03215.10 gi|330835863|ref|YP_004410591.1| - 0.003 16.3 0.0 0.23 10.0 0.0 2.3 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein Fer4_16 PF13484.1 gi|330835863|ref|YP_004410591.1| - 0.0069 17.1 0.4 0.0069 17.1 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain MMR_HSR1 PF01926.18 gi|330835863|ref|YP_004410591.1| - 0.0077 16.1 2.8 1.6 8.6 0.2 3.0 3 1 0 3 3 2 1 50S ribosome-binding GTPase ATP-synt_ab PF00006.20 gi|330835863|ref|YP_004410591.1| - 0.0092 15.5 1.6 0.23 10.9 0.1 2.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|330835863|ref|YP_004410591.1| - 0.0099 15.7 0.4 1.8 8.4 0.0 3.3 4 0 0 4 4 3 1 AAA domain T2SE PF00437.15 gi|330835863|ref|YP_004410591.1| - 0.01 14.7 0.4 1.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_30 PF13604.1 gi|330835863|ref|YP_004410591.1| - 0.011 15.2 0.2 0.99 8.9 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_18 PF13238.1 gi|330835863|ref|YP_004410591.1| - 0.013 15.7 9.4 1.1 9.5 2.0 3.5 2 2 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|330835863|ref|YP_004410591.1| - 0.018 13.7 1.0 3.8 6.2 0.0 2.2 2 0 0 2 2 2 0 ArgK protein AAA_10 PF12846.2 gi|330835863|ref|YP_004410591.1| - 0.021 14.2 0.3 6.1 6.1 0.0 3.0 3 0 0 3 3 3 0 AAA-like domain AAA_14 PF13173.1 gi|330835863|ref|YP_004410591.1| - 0.026 14.4 6.9 1.9 8.3 0.2 3.5 4 0 0 4 4 4 0 AAA domain Zeta_toxin PF06414.7 gi|330835863|ref|YP_004410591.1| - 0.032 13.3 0.3 13 4.8 0.0 3.5 4 0 0 4 4 4 0 Zeta toxin RuvB_N PF05496.7 gi|330835863|ref|YP_004410591.1| - 0.035 13.1 0.0 4 6.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus PduV-EutP PF10662.4 gi|330835863|ref|YP_004410591.1| - 0.037 13.5 1.1 1.7 8.1 0.1 3.2 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation KAP_NTPase PF07693.9 gi|330835863|ref|YP_004410591.1| - 0.04 12.9 0.3 4.8 6.0 0.1 2.5 2 1 0 2 2 2 0 KAP family P-loop domain Fer4_3 PF12798.2 gi|330835863|ref|YP_004410591.1| - 0.04 14.4 3.8 0.04 14.4 2.6 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|330835863|ref|YP_004410591.1| - 0.043 14.0 9.7 0.14 12.3 6.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain DUF87 PF01935.12 gi|330835863|ref|YP_004410591.1| - 0.047 13.5 2.0 2.1 8.1 0.0 3.2 3 1 1 4 4 3 0 Domain of unknown function DUF87 Fer4_18 PF13746.1 gi|330835863|ref|YP_004410591.1| - 0.05 14.0 0.6 0.05 14.0 0.4 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain AAA_24 PF13479.1 gi|330835863|ref|YP_004410591.1| - 0.1 12.1 3.4 3.2 7.2 0.0 2.9 3 0 0 3 3 3 0 AAA domain Fer4_11 PF13247.1 gi|330835863|ref|YP_004410591.1| - 0.1 12.4 2.0 0.18 11.6 1.4 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|330835863|ref|YP_004410591.1| - 0.15 10.4 3.0 1.1 7.6 0.6 2.8 3 1 0 3 3 3 0 AAA domain AAA_28 PF13521.1 gi|330835863|ref|YP_004410591.1| - 0.15 11.9 0.4 17 5.3 0.1 2.7 2 1 0 2 2 2 0 AAA domain Fer4_4 PF12800.2 gi|330835863|ref|YP_004410591.1| - 0.37 11.2 12.3 0.16 12.3 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_8 PF13183.1 gi|330835863|ref|YP_004410591.1| - 0.51 10.4 5.9 0.38 10.8 1.6 1.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain NTPase_1 PF03266.10 gi|330835863|ref|YP_004410591.1| - 0.55 9.9 6.9 2.8 7.6 0.2 3.0 3 0 0 3 3 2 0 NTPase SRP54 PF00448.17 gi|330835863|ref|YP_004410591.1| - 0.76 9.1 6.3 4.3 6.7 0.0 2.9 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Fer4_17 PF13534.1 gi|330835863|ref|YP_004410591.1| - 1.7 9.0 7.7 0.78 10.1 1.6 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain FBPase_3 PF01950.11 gi|330835864|ref|YP_004410592.1| - 5e-179 594.9 0.0 5.7e-179 594.7 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Ribosomal_S17e PF00833.13 gi|330835865|ref|YP_004410593.1| - 1.3e-16 60.4 2.7 1.3e-16 60.4 1.8 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4473 PF14747.1 gi|330835865|ref|YP_004410593.1| - 0.053 13.7 0.4 0.065 13.4 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4473) WPP PF13943.1 gi|330835865|ref|YP_004410593.1| - 0.063 13.4 0.2 0.077 13.2 0.2 1.2 1 0 0 1 1 1 0 WPP domain NAAA-beta PF15508.1 gi|330835865|ref|YP_004410593.1| - 0.073 13.4 0.3 0.087 13.1 0.2 1.2 1 0 0 1 1 1 0 beta subunit of N-acylethanolamine-hydrolyzing acid amidase CAP18_C PF12153.3 gi|330835865|ref|YP_004410593.1| - 0.27 10.9 1.8 1.4 8.6 0.2 2.4 2 1 0 2 2 2 0 LPS binding domain of CAP18 (C terminal) NTS PF15447.1 gi|330835865|ref|YP_004410593.1| - 9.1 6.7 7.6 60 4.1 5.3 2.2 1 1 0 1 1 1 0 N-terminal segments of PfEMP1 Urm1 PF09138.6 gi|330835866|ref|YP_004410594.1| - 9e-07 28.9 0.3 1.1e-06 28.6 0.2 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.15 gi|330835866|ref|YP_004410594.1| - 0.0034 17.7 0.2 0.0041 17.5 0.1 1.3 1 1 0 1 1 1 1 ThiS family Lambda_tail_I PF06805.7 gi|330835866|ref|YP_004410594.1| - 0.091 12.6 0.0 0.39 10.5 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I DUF87 PF01935.12 gi|330835868|ref|YP_004410596.1| - 2.5e-23 83.0 1.1 4.8e-23 82.1 0.7 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|330835868|ref|YP_004410596.1| - 9.3e-21 74.5 0.5 4.9e-20 72.1 0.4 1.9 1 1 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|330835868|ref|YP_004410596.1| - 4.4e-09 35.2 0.8 0.00013 20.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_17 PF13207.1 gi|330835868|ref|YP_004410596.1| - 7.1e-06 26.8 0.3 2e-05 25.4 0.1 2.0 2 1 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|330835868|ref|YP_004410596.1| - 1.7e-05 25.1 0.6 5.7e-05 23.4 0.4 2.1 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|330835868|ref|YP_004410596.1| - 0.0003 19.6 0.2 0.0031 16.3 0.1 2.1 2 0 0 2 2 2 1 ArgK protein TrwB_AAD_bind PF10412.4 gi|330835868|ref|YP_004410596.1| - 0.00082 18.1 0.2 0.0064 15.1 0.2 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|330835868|ref|YP_004410596.1| - 0.0013 18.4 0.3 0.0043 16.7 0.1 2.0 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|330835868|ref|YP_004410596.1| - 0.0036 17.4 0.1 0.38 10.8 0.0 2.7 2 0 0 2 2 2 1 AAA domain Zot PF05707.7 gi|330835868|ref|YP_004410596.1| - 0.0062 16.0 0.1 0.033 13.6 0.0 2.1 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) SRP54 PF00448.17 gi|330835868|ref|YP_004410596.1| - 0.0071 15.8 0.0 0.02 14.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|330835868|ref|YP_004410596.1| - 0.0088 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|330835868|ref|YP_004410596.1| - 0.0098 16.1 0.1 0.024 14.9 0.0 1.6 1 0 0 1 1 1 1 ABC transporter T2SE PF00437.15 gi|330835868|ref|YP_004410596.1| - 0.012 14.5 0.2 0.021 13.7 0.1 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.18 gi|330835868|ref|YP_004410596.1| - 0.013 14.9 0.0 0.031 13.7 0.0 1.6 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|330835868|ref|YP_004410596.1| - 0.027 14.6 0.2 1.8 8.7 0.0 2.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|330835868|ref|YP_004410596.1| - 0.027 14.1 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.1 gi|330835868|ref|YP_004410596.1| - 0.038 13.5 0.2 0.078 12.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T4SS-DNA_transf PF02534.9 gi|330835868|ref|YP_004410596.1| - 0.079 11.5 0.0 0.16 10.5 0.0 1.4 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer DNA_PPF PF02916.10 gi|330835868|ref|YP_004410596.1| - 0.13 12.3 0.0 0.13 12.3 0.0 2.0 3 0 0 3 3 2 0 DNA polymerase processivity factor Cpn60_TCP1 PF00118.19 gi|330835869|ref|YP_004410597.1| - 7.3e-160 532.7 10.8 8.5e-160 532.5 7.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family tRNA_int_endo PF01974.12 gi|330835871|ref|YP_004410599.1| - 0.00016 21.4 0.3 0.00042 20.0 0.2 1.7 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain DZF PF07528.9 gi|330835871|ref|YP_004410599.1| - 0.1 12.0 0.1 0.12 11.7 0.1 1.1 1 0 0 1 1 1 0 DZF domain MGAT2 PF05060.9 gi|330835871|ref|YP_004410599.1| - 0.1 11.5 0.3 0.11 11.4 0.2 1.1 1 0 0 1 1 1 0 N-acetylglucosaminyltransferase II (MGAT2) tRNA-synt_His PF13393.1 gi|330835872|ref|YP_004410600.1| - 1e-64 218.5 0.0 1.9e-64 217.7 0.0 1.4 2 0 0 2 2 2 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|330835872|ref|YP_004410600.1| - 4.4e-25 88.2 0.5 1.5e-24 86.5 0.2 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|330835872|ref|YP_004410600.1| - 1.8e-13 50.2 2.4 3.4e-13 49.3 0.5 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|330835872|ref|YP_004410600.1| - 1.5e-09 37.4 0.0 4.9e-09 35.7 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HGTP_anticodon2 PF12745.2 gi|330835872|ref|YP_004410600.1| - 0.005 16.0 1.4 0.0074 15.4 0.9 1.2 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs tRNA-synt_2 PF00152.15 gi|330835872|ref|YP_004410600.1| - 0.061 12.0 1.6 3.4 6.3 0.3 2.7 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) Proteasome PF00227.21 gi|330835873|ref|YP_004410601.1| - 1.6e-44 151.4 0.0 1.9e-44 151.2 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit RNA_pol_Rpb8 PF03870.10 gi|330835874|ref|YP_004410602.1| - 0.013 15.7 0.3 1.7 8.8 0.0 2.1 1 1 1 2 2 2 0 RNA polymerase Rpb8 LamB_YcsF PF03746.11 gi|330835874|ref|YP_004410602.1| - 0.074 12.1 0.0 0.092 11.8 0.0 1.1 1 0 0 1 1 1 0 LamB/YcsF family Lsm_C PF14894.1 gi|330835875|ref|YP_004410603.1| - 2.4e-29 100.6 0.2 3.3e-29 100.2 0.2 1.2 1 0 0 1 1 1 1 Lsm C-terminal TGT PF01702.13 gi|330835876|ref|YP_004410604.1| - 8.2e-47 159.4 0.0 1.1e-46 159.0 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|330835877|ref|YP_004410605.1| - 4.2e-27 95.4 0.0 4.9e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family TGT_C2 PF14810.1 gi|330835878|ref|YP_004410606.1| - 5.1e-21 74.2 0.0 1.2e-20 73.0 0.0 1.7 1 1 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|330835878|ref|YP_004410606.1| - 7e-16 57.7 2.9 1.1e-15 57.1 2.0 1.2 1 0 0 1 1 1 1 PUA domain AAA PF00004.24 gi|330835879|ref|YP_004410607.1| - 3.2e-43 147.1 0.0 6.8e-43 146.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|330835879|ref|YP_004410607.1| - 9.9e-08 32.0 0.0 3.8e-07 30.1 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|330835879|ref|YP_004410607.1| - 3.2e-06 27.2 0.0 2e-05 24.6 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|330835879|ref|YP_004410607.1| - 9.2e-06 25.4 0.3 0.00012 21.7 0.2 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|330835879|ref|YP_004410607.1| - 1.3e-05 25.3 0.2 0.00031 20.9 0.1 2.5 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|330835879|ref|YP_004410607.1| - 1.8e-05 23.9 0.0 5.1e-05 22.4 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|330835879|ref|YP_004410607.1| - 0.00031 21.5 0.2 0.0012 19.6 0.0 2.1 2 1 0 2 2 1 1 AAA domain AAA_14 PF13173.1 gi|330835879|ref|YP_004410607.1| - 0.00039 20.3 0.0 0.00096 19.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|330835879|ref|YP_004410607.1| - 0.0004 19.5 0.5 0.0019 17.3 0.0 2.2 3 0 0 3 3 3 1 Zeta toxin AAA_28 PF13521.1 gi|330835879|ref|YP_004410607.1| - 0.00076 19.4 0.0 0.0016 18.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|330835879|ref|YP_004410607.1| - 0.00086 18.7 1.3 0.0058 16.0 0.1 2.6 1 1 2 3 3 3 1 AAA domain DUF815 PF05673.8 gi|330835879|ref|YP_004410607.1| - 0.00089 18.2 0.0 0.0017 17.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|330835879|ref|YP_004410607.1| - 0.001 18.3 0.0 0.0022 17.2 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|330835879|ref|YP_004410607.1| - 0.0011 18.4 0.1 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|330835879|ref|YP_004410607.1| - 0.0012 17.6 0.0 0.0025 16.6 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_24 PF13479.1 gi|330835879|ref|YP_004410607.1| - 0.0019 17.8 0.0 0.0035 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|330835879|ref|YP_004410607.1| - 0.002 18.0 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|330835879|ref|YP_004410607.1| - 0.0029 17.3 0.2 0.0068 16.1 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain RNA_helicase PF00910.17 gi|330835879|ref|YP_004410607.1| - 0.0048 17.0 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase AAA_18 PF13238.1 gi|330835879|ref|YP_004410607.1| - 0.0055 17.0 0.4 0.071 13.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|330835879|ref|YP_004410607.1| - 0.0059 16.1 0.2 0.037 13.5 0.0 2.3 1 1 1 2 2 2 1 Sigma-54 interaction domain KaiC PF06745.8 gi|330835879|ref|YP_004410607.1| - 0.0071 15.4 0.7 0.021 13.9 0.1 2.1 2 1 0 2 2 1 1 KaiC NACHT PF05729.7 gi|330835879|ref|YP_004410607.1| - 0.01 15.5 0.1 0.038 13.6 0.0 1.9 2 0 0 2 2 2 0 NACHT domain Sigma54_activ_2 PF14532.1 gi|330835879|ref|YP_004410607.1| - 0.014 15.4 0.0 0.04 13.9 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|330835879|ref|YP_004410607.1| - 0.014 15.1 0.0 0.045 13.4 0.0 1.8 1 1 0 1 1 1 0 Archaeal ATPase Bac_DnaA PF00308.13 gi|330835879|ref|YP_004410607.1| - 0.037 13.6 0.1 0.15 11.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial dnaA protein Parvo_NS1 PF01057.12 gi|330835879|ref|YP_004410607.1| - 0.044 12.6 0.0 0.076 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|330835879|ref|YP_004410607.1| - 0.054 12.7 0.1 0.13 11.4 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein ThylakoidFormat PF11264.3 gi|330835879|ref|YP_004410607.1| - 0.07 12.7 0.2 0.17 11.4 0.2 1.6 1 0 0 1 1 1 0 Thylakoid formation protein DUF4515 PF14988.1 gi|330835879|ref|YP_004410607.1| - 0.086 12.4 0.9 0.16 11.6 0.2 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4515) NB-ARC PF00931.17 gi|330835879|ref|YP_004410607.1| - 0.098 11.5 0.0 0.18 10.6 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NTPase_1 PF03266.10 gi|330835879|ref|YP_004410607.1| - 0.1 12.3 3.1 1.8 8.2 0.0 3.0 2 2 1 3 3 3 0 NTPase AAA_30 PF13604.1 gi|330835879|ref|YP_004410607.1| - 0.11 12.1 0.0 0.33 10.4 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|330835879|ref|YP_004410607.1| - 1.2 9.4 5.0 2.8 8.1 0.0 2.7 2 1 0 2 2 2 0 AAA domain bZIP_1 PF00170.16 gi|330835879|ref|YP_004410607.1| - 2 8.4 5.3 0.36 10.8 0.7 2.0 3 0 0 3 3 1 0 bZIP transcription factor FlaC_arch PF05377.6 gi|330835879|ref|YP_004410607.1| - 2.9 7.8 5.4 7.5 6.5 0.6 2.8 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) HTH_3 PF01381.17 gi|330835880|ref|YP_004410608.1| - 6.4e-07 29.1 0.7 1.1e-06 28.3 0.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|330835880|ref|YP_004410608.1| - 2.7e-05 24.1 0.7 6.6e-05 22.8 0.5 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|330835880|ref|YP_004410608.1| - 4.8e-05 22.9 0.5 7.9e-05 22.2 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|330835880|ref|YP_004410608.1| - 0.00092 19.3 0.0 0.0014 18.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain GvpH PF05455.6 gi|330835880|ref|YP_004410608.1| - 0.0023 17.5 0.4 0.0029 17.2 0.3 1.2 1 0 0 1 1 1 1 GvpH zf-UDP PF14569.1 gi|330835880|ref|YP_004410608.1| - 0.0073 16.0 0.4 0.012 15.3 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding RING-finger HTH_37 PF13744.1 gi|330835880|ref|YP_004410608.1| - 0.0079 15.9 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3133 PF11331.3 gi|330835880|ref|YP_004410608.1| - 0.065 12.8 0.0 0.15 11.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3133) LIM PF00412.17 gi|330835880|ref|YP_004410608.1| - 0.11 12.5 0.8 0.22 11.6 0.5 1.4 1 0 0 1 1 1 0 LIM domain DZR PF12773.2 gi|330835880|ref|YP_004410608.1| - 0.13 12.0 0.2 0.24 11.2 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF4428 PF14471.1 gi|330835880|ref|YP_004410608.1| - 0.16 11.7 2.1 0.19 11.5 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) C1_2 PF03107.11 gi|330835880|ref|YP_004410608.1| - 0.22 11.6 0.3 0.22 11.6 0.2 1.8 2 0 0 2 2 2 0 C1 domain MMR_HSR1 PF01926.18 gi|330835881|ref|YP_004410609.1| - 1.5e-16 60.3 0.2 2.8e-16 59.4 0.2 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|330835881|ref|YP_004410609.1| - 4.5e-07 29.4 0.1 1.2e-05 24.7 0.1 2.4 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|330835881|ref|YP_004410609.1| - 7.9e-07 28.4 0.5 2.2e-06 27.0 0.4 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|330835881|ref|YP_004410609.1| - 1.1e-05 25.8 0.1 2.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein SRPRB PF09439.5 gi|330835881|ref|YP_004410609.1| - 3.2e-05 23.2 0.2 5.8e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Ras PF00071.17 gi|330835881|ref|YP_004410609.1| - 6.7e-05 22.3 0.0 0.00024 20.5 0.0 1.9 1 1 0 1 1 1 1 Ras family Arf PF00025.16 gi|330835881|ref|YP_004410609.1| - 0.0018 17.5 0.1 0.0052 16.0 0.1 1.7 1 1 0 1 1 1 1 ADP-ribosylation factor family GTP-bdg_N PF13167.1 gi|330835881|ref|YP_004410609.1| - 0.0037 17.3 0.0 0.0077 16.3 0.0 1.5 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal Dynamin_N PF00350.18 gi|330835881|ref|YP_004410609.1| - 0.016 15.0 0.6 6.3 6.5 0.0 2.4 1 1 1 2 2 2 0 Dynamin family ABC_tran PF00005.22 gi|330835881|ref|YP_004410609.1| - 0.026 14.8 0.1 0.073 13.3 0.0 1.7 1 1 0 1 1 1 0 ABC transporter DUF3939 PF13075.1 gi|330835881|ref|YP_004410609.1| - 0.062 13.0 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) AAA_23 PF13476.1 gi|330835881|ref|YP_004410609.1| - 0.23 11.7 8.2 0.36 11.1 0.4 2.3 1 1 1 2 2 2 0 AAA domain Trm56 PF01994.11 gi|330835882|ref|YP_004410610.1| - 2.9e-36 123.8 0.1 3.1e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|330835883|ref|YP_004410611.1| - 1.7e-27 94.9 5.8 1.7e-27 94.9 4.0 1.8 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_9 PF08221.6 gi|330835883|ref|YP_004410611.1| - 1.1e-06 28.4 0.0 4e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|330835883|ref|YP_004410611.1| - 0.0027 17.4 0.1 0.0053 16.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn_Tnp_IS1595 PF12760.2 gi|330835883|ref|YP_004410611.1| - 0.01 15.6 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Phage_rep_org_N PF09681.5 gi|330835883|ref|YP_004410611.1| - 0.014 14.9 0.3 0.049 13.1 0.1 2.1 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) TF_Zn_Ribbon PF08271.7 gi|330835883|ref|YP_004410611.1| - 0.021 14.1 1.5 0.059 12.6 0.6 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf-Mss51 PF13824.1 gi|330835883|ref|YP_004410611.1| - 0.024 14.4 0.1 0.085 12.7 0.0 2.0 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 TrmB PF01978.14 gi|330835883|ref|YP_004410611.1| - 0.03 14.0 1.1 0.056 13.1 0.0 1.9 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf-ISL3 PF14690.1 gi|330835883|ref|YP_004410611.1| - 0.049 13.6 0.1 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C4_Topoisom PF01396.14 gi|330835883|ref|YP_004410611.1| - 0.06 12.8 0.1 0.15 11.6 0.1 1.7 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HTH_11 PF08279.7 gi|330835883|ref|YP_004410611.1| - 0.061 12.9 0.1 0.18 11.5 0.0 1.8 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|330835883|ref|YP_004410611.1| - 0.063 13.4 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Phage_terminase PF10668.4 gi|330835883|ref|YP_004410611.1| - 0.1 12.4 0.2 0.39 10.5 0.0 2.0 2 0 0 2 2 2 0 Phage terminase small subunit Rad50_zn_hook PF04423.9 gi|330835883|ref|YP_004410611.1| - 3 7.3 7.7 2.1 7.8 0.3 3.2 3 0 0 3 3 3 0 Rad50 zinc hook motif DUF1610 PF07754.6 gi|330835883|ref|YP_004410611.1| - 5.8 7.1 8.0 0.28 11.3 1.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) DNA_methylase PF00145.12 gi|330835884|ref|YP_004410612.1| - 1.4e-52 178.9 0.0 1e-38 133.3 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|330835884|ref|YP_004410612.1| - 0.0013 18.7 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|330835884|ref|YP_004410612.1| - 0.0042 16.6 0.0 0.0077 15.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Lipase_GDSL_3 PF14606.1 gi|330835884|ref|YP_004410612.1| - 0.051 13.3 0.0 0.075 12.7 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family DUF2122 PF09895.4 gi|330835885|ref|YP_004410613.1| - 2.3e-32 111.3 0.0 3.3e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) RNA_Me_trans PF04252.8 gi|330835885|ref|YP_004410613.1| - 0.008 15.5 0.0 0.01 15.2 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase Rib_5-P_isom_A PF06026.9 gi|330835887|ref|YP_004410615.1| - 6.8e-35 119.9 0.1 8.9e-35 119.5 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|330835887|ref|YP_004410615.1| - 0.00069 19.2 0.1 0.0011 18.6 0.1 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|330835887|ref|YP_004410615.1| - 0.0034 16.3 0.0 0.0051 15.7 0.0 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain Elf1 PF05129.8 gi|330835890|ref|YP_004410618.1| - 1.1e-18 66.7 0.0 1.4e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|330835890|ref|YP_004410618.1| - 0.00015 22.0 0.2 0.00023 21.3 0.2 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Terminase_GpA PF05876.7 gi|330835890|ref|YP_004410618.1| - 0.013 13.8 0.0 0.015 13.7 0.0 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Rubredoxin PF00301.15 gi|330835890|ref|YP_004410618.1| - 0.016 15.0 0.1 0.25 11.2 0.0 2.5 2 0 0 2 2 2 0 Rubredoxin zf-H2C2_2 PF13465.1 gi|330835890|ref|YP_004410618.1| - 0.029 14.6 4.4 1.8 9.0 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|330835890|ref|YP_004410618.1| - 0.046 13.3 1.1 0.1 12.2 0.7 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF4109 PF13397.1 gi|330835890|ref|YP_004410618.1| - 0.046 14.0 0.1 0.14 12.5 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4109) zf-FPG_IleRS PF06827.9 gi|330835890|ref|YP_004410618.1| - 0.062 12.9 0.5 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-CSL PF05207.8 gi|330835890|ref|YP_004410618.1| - 0.069 12.6 0.2 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 CSL zinc finger TF_Zn_Ribbon PF08271.7 gi|330835890|ref|YP_004410618.1| - 0.072 12.4 1.1 0.22 10.8 0.8 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding IBR PF01485.16 gi|330835890|ref|YP_004410618.1| - 0.091 12.6 0.9 0.15 11.9 0.6 1.3 1 0 0 1 1 1 0 IBR domain zf-Mss51 PF13824.1 gi|330835890|ref|YP_004410618.1| - 0.13 12.0 3.5 2.4 8.0 0.2 2.3 1 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|330835890|ref|YP_004410618.1| - 0.19 10.9 4.5 0.77 9.0 3.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|330835890|ref|YP_004410618.1| - 0.43 10.4 3.5 2.9 7.7 2.6 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|330835890|ref|YP_004410618.1| - 0.71 9.8 3.5 2.3 8.2 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_4 PF13717.1 gi|330835890|ref|YP_004410618.1| - 3.2 7.5 5.3 17 5.2 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|330835890|ref|YP_004410618.1| - 5.2 6.7 6.0 15 5.2 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain PcrB PF01884.12 gi|330835891|ref|YP_004410619.1| - 1.2e-58 198.1 3.0 1.4e-58 197.8 2.1 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|330835891|ref|YP_004410619.1| - 2.1e-06 27.2 0.1 3.3e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.7 gi|330835891|ref|YP_004410619.1| - 0.00041 19.4 0.6 0.0011 18.0 0.4 1.6 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.9 gi|330835891|ref|YP_004410619.1| - 0.00048 19.1 0.4 0.00076 18.5 0.1 1.5 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.16 gi|330835891|ref|YP_004410619.1| - 0.00086 18.3 0.8 0.0015 17.5 0.6 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Trp_syntA PF00290.15 gi|330835891|ref|YP_004410619.1| - 0.0011 17.5 0.3 0.0018 16.8 0.2 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain ThiG PF05690.9 gi|330835891|ref|YP_004410619.1| - 0.0047 16.0 1.4 0.011 14.8 0.2 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG IMPDH PF00478.20 gi|330835891|ref|YP_004410619.1| - 0.013 14.4 0.1 0.02 13.7 0.1 1.3 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.14 gi|330835891|ref|YP_004410619.1| - 0.013 14.5 0.2 0.029 13.4 0.1 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family IGPS PF00218.16 gi|330835891|ref|YP_004410619.1| - 0.024 13.6 0.1 0.33 9.9 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Sec61_beta PF03911.11 gi|330835892|ref|YP_004410620.1| - 1.8e-15 56.4 0.9 2e-15 56.2 0.6 1.1 1 0 0 1 1 1 1 Sec61beta family DUF1634 PF07843.6 gi|330835892|ref|YP_004410620.1| - 0.14 11.7 1.4 0.16 11.6 1.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1634) MHC2-interact PF09307.5 gi|330835892|ref|YP_004410620.1| - 0.57 9.9 2.2 0.82 9.4 0.0 1.9 1 1 1 2 2 2 0 CLIP, MHC2 interacting CBS PF00571.23 gi|330835893|ref|YP_004410621.1| - 5.8e-19 67.5 2.6 4e-10 39.3 0.1 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.17 gi|330835893|ref|YP_004410621.1| - 2.2e-14 53.0 0.3 4.6e-14 51.9 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|330835893|ref|YP_004410621.1| - 3e-13 49.7 0.0 5e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|330835893|ref|YP_004410621.1| - 1.3e-11 44.4 0.3 4.4e-11 42.6 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|330835893|ref|YP_004410621.1| - 5.9e-06 25.8 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|330835893|ref|YP_004410621.1| - 4.2e-05 23.2 0.0 0.00055 19.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|330835893|ref|YP_004410621.1| - 0.00011 22.3 0.0 0.00044 20.3 0.0 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|330835893|ref|YP_004410621.1| - 0.00022 20.5 0.1 0.0011 18.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|330835893|ref|YP_004410621.1| - 0.00049 19.3 0.0 0.0021 17.3 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|330835893|ref|YP_004410621.1| - 0.00063 19.3 0.1 0.0073 15.9 0.0 2.5 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|330835893|ref|YP_004410621.1| - 0.0033 17.0 0.0 0.031 13.9 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|330835893|ref|YP_004410621.1| - 0.0035 16.8 0.4 0.01 15.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|330835893|ref|YP_004410621.1| - 0.012 15.1 0.1 0.053 13.1 0.0 2.1 2 1 0 2 2 2 0 Homeodomain-like domain PRC PF05239.11 gi|330835893|ref|YP_004410621.1| - 0.034 14.0 0.1 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 PRC-barrel domain HTH_AsnC-type PF13404.1 gi|330835893|ref|YP_004410621.1| - 0.036 13.5 0.0 0.11 11.9 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF367 PF04034.8 gi|330835894|ref|YP_004410622.1| - 1e-41 141.5 0.0 1.2e-41 141.3 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF367) DUF1086 PF06461.6 gi|330835894|ref|YP_004410622.1| - 0.049 13.4 0.1 0.12 12.1 0.0 1.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1086) AsnC_trans_reg PF01037.16 gi|330835895|ref|YP_004410623.1| - 9.4e-18 63.6 0.0 1.1e-17 63.5 0.0 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|330835895|ref|YP_004410623.1| - 0.00076 19.1 0.0 0.00076 19.1 0.0 1.1 1 0 0 1 1 1 1 GYD domain DUF1743 PF08489.6 gi|330835896|ref|YP_004410624.1| - 7.7e-32 109.5 0.0 1.3e-31 108.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.2 gi|330835896|ref|YP_004410624.1| - 0.092 12.5 1.8 0.18 11.6 1.2 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain