# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|330833868|ref|YP_004408596.1| - 1.6e-18 66.5 2.5 1.8e-18 66.3 0.7 2.1 2 1 1 3 3 3 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|330833868|ref|YP_004408596.1| - 4.5e-15 56.1 0.2 5.4e-14 52.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330833868|ref|YP_004408596.1| - 6.9e-12 46.1 0.1 2.3e-10 41.1 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|330833868|ref|YP_004408596.1| - 8.1e-12 45.7 0.0 1.9e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|330833868|ref|YP_004408596.1| - 4.2e-07 30.1 3.3 4.2e-07 30.1 3.3 2.0 2 1 0 2 2 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|330833868|ref|YP_004408596.1| - 7.2e-07 28.8 0.1 1.4e-06 27.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|330833868|ref|YP_004408596.1| - 1.4e-05 24.4 0.1 2.3e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 NB-ARC domain DUF2075 PF09848.9 gi|330833868|ref|YP_004408596.1| - 0.00065 19.0 0.0 0.00094 18.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DEAD PF00270.29 gi|330833868|ref|YP_004408596.1| - 0.0015 18.3 0.7 0.5 10.1 0.1 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase Sigma54_activat PF00158.26 gi|330833868|ref|YP_004408596.1| - 0.0017 18.0 0.0 0.0045 16.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.13 gi|330833868|ref|YP_004408596.1| - 0.0018 17.5 0.0 0.0042 16.3 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|330833868|ref|YP_004408596.1| - 0.0054 16.6 1.0 0.033 14.0 1.0 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_5 PF07728.14 gi|330833868|ref|YP_004408596.1| - 0.0055 16.7 0.1 0.02 14.9 0.0 2.1 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) KAP_NTPase PF07693.14 gi|330833868|ref|YP_004408596.1| - 0.0063 15.8 1.7 2.8 7.1 0.4 3.1 2 1 1 3 3 3 2 KAP family P-loop domain AAA_7 PF12775.7 gi|330833868|ref|YP_004408596.1| - 0.0074 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_assoc_2 PF16193.5 gi|330833868|ref|YP_004408596.1| - 0.012 15.9 0.1 0.036 14.4 0.1 1.8 1 0 0 1 1 1 0 AAA C-terminal domain NACHT PF05729.12 gi|330833868|ref|YP_004408596.1| - 0.013 15.4 0.0 0.026 14.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_32 PF13654.6 gi|330833868|ref|YP_004408596.1| - 0.028 13.2 2.2 0.18 10.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|330833868|ref|YP_004408596.1| - 0.033 14.7 0.2 0.11 13.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|330833868|ref|YP_004408596.1| - 0.035 14.1 0.0 0.078 13.0 0.0 1.7 2 0 0 2 2 1 0 Type III restriction enzyme, res subunit PIF1 PF05970.14 gi|330833868|ref|YP_004408596.1| - 0.037 13.2 0.2 0.081 12.1 0.2 1.6 1 1 0 1 1 1 0 PIF1-like helicase RNA_helicase PF00910.22 gi|330833868|ref|YP_004408596.1| - 0.058 13.8 0.0 0.13 12.7 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Flu_B_M2 PF04772.12 gi|330833868|ref|YP_004408596.1| - 0.058 13.6 0.0 0.21 11.8 0.0 2.0 1 1 0 1 1 1 0 Influenza B matrix protein 2 (BM2) Zeta_toxin PF06414.12 gi|330833868|ref|YP_004408596.1| - 0.059 12.6 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin E2F_TDP PF02319.20 gi|330833868|ref|YP_004408596.1| - 0.36 10.9 3.1 3.4 7.8 0.1 3.1 3 0 0 3 3 3 0 E2F/DP family winged-helix DNA-binding domain DUF87 PF01935.17 gi|330833868|ref|YP_004408596.1| - 0.5 10.4 4.3 12 5.8 0.4 3.1 2 1 1 3 3 3 0 Helicase HerA, central domain DUF99 PF01949.16 gi|330833869|ref|YP_004408597.1| - 3.5e-21 75.4 0.0 1.1e-20 73.9 0.0 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF99 4HBT PF03061.22 gi|330833870|ref|YP_004408598.1| - 1.8e-23 82.7 0.0 5.6e-12 45.8 0.0 2.2 2 0 0 2 2 2 2 Thioesterase superfamily CTP_transf_like PF01467.26 gi|330833871|ref|YP_004408599.1| - 7.2e-09 36.0 0.0 1.4e-08 35.0 0.0 1.5 1 0 0 1 1 1 1 Cytidylyltransferase-like SAM_adeno_trans PF01887.16 gi|330833872|ref|YP_004408600.1| - 4.3e-63 212.9 0.1 4.8e-63 212.7 0.1 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF575 PF04746.12 gi|330833872|ref|YP_004408600.1| - 0.052 13.8 0.0 0.085 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF575) CYTH PF01928.21 gi|330833873|ref|YP_004408601.1| - 1.5e-26 93.4 0.6 1.7e-26 93.3 0.6 1.0 1 0 0 1 1 1 1 CYTH domain DUF4250 PF14056.6 gi|330833873|ref|YP_004408601.1| - 0.021 14.8 0.5 0.33 10.9 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) DUF3896 PF13035.6 gi|330833873|ref|YP_004408601.1| - 2.3 8.5 5.6 1.1 9.5 0.3 2.9 4 0 0 4 4 4 0 Protein of unknown function (DUF3896) Methyltr_RsmB-F PF01189.17 gi|330833874|ref|YP_004408602.1| - 1.2e-51 175.3 0.0 1.6e-51 174.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|330833874|ref|YP_004408602.1| - 7.7e-16 58.4 0.0 1.5e-15 57.4 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|330833874|ref|YP_004408602.1| - 1.1e-06 28.5 0.0 1.7e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330833874|ref|YP_004408602.1| - 0.0013 18.1 0.0 0.0033 16.8 0.0 1.6 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|330833874|ref|YP_004408602.1| - 0.003 18.2 0.0 0.0065 17.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|330833874|ref|YP_004408602.1| - 0.005 16.6 0.0 0.0088 15.8 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein PCMT PF01135.19 gi|330833874|ref|YP_004408602.1| - 0.0074 16.1 0.0 0.011 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.10 gi|330833874|ref|YP_004408602.1| - 0.01 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ribosomal_L29 PF00831.23 gi|330833874|ref|YP_004408602.1| - 0.096 12.7 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 Ribosomal L29 protein FtsJ PF01728.19 gi|330833874|ref|YP_004408602.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase UPF0113 PF03657.13 gi|330833875|ref|YP_004408603.1| - 1.6e-08 34.7 0.1 3.9e-08 33.5 0.1 1.7 1 0 0 1 1 1 1 UPF0113 PUA domain Rad51 PF08423.11 gi|330833876|ref|YP_004408604.1| - 3.3e-90 301.8 0.7 3.9e-90 301.6 0.7 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|330833876|ref|YP_004408604.1| - 8.2e-16 58.2 1.1 1.1e-15 57.8 1.1 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|330833876|ref|YP_004408604.1| - 1.1e-11 45.1 0.8 3.6e-11 43.5 0.2 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|330833876|ref|YP_004408604.1| - 5.6e-10 39.0 0.4 9.4e-10 38.2 0.4 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|330833876|ref|YP_004408604.1| - 2.4e-09 37.1 0.0 3.6e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|330833876|ref|YP_004408604.1| - 0.00025 20.8 0.0 0.00041 20.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330833876|ref|YP_004408604.1| - 0.0015 18.8 0.1 0.0035 17.6 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|330833876|ref|YP_004408604.1| - 0.016 15.8 0.0 0.032 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain HHH_2 PF12826.7 gi|330833876|ref|YP_004408604.1| - 0.018 15.2 0.0 0.056 13.5 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|330833876|ref|YP_004408604.1| - 0.019 15.2 0.3 0.16 12.2 0.1 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH PF00633.23 gi|330833876|ref|YP_004408604.1| - 0.051 13.5 0.1 0.88 9.6 0.1 2.7 2 0 0 2 2 2 0 Helix-hairpin-helix motif BAF PF02961.14 gi|330833876|ref|YP_004408604.1| - 0.066 13.7 0.0 0.14 12.6 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor Cdd1 PF11731.8 gi|330833876|ref|YP_004408604.1| - 0.094 13.0 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus HIT PF01230.23 gi|330833877|ref|YP_004408605.1| - 7.1e-12 45.9 0.0 1.1e-11 45.3 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|330833877|ref|YP_004408605.1| - 9.3e-08 32.0 0.5 2.4e-07 30.6 0.5 1.8 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|330833877|ref|YP_004408605.1| - 3.4e-07 30.7 0.0 5.1e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding PALP PF00291.25 gi|330833878|ref|YP_004408606.1| - 1.3e-81 274.2 0.0 1.7e-81 273.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|330833878|ref|YP_004408606.1| - 0.00094 18.9 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|330833878|ref|YP_004408606.1| - 0.0041 17.7 0.6 0.036 14.7 0.1 2.4 2 0 0 2 2 2 1 ACT domain PDT PF00800.18 gi|330833879|ref|YP_004408607.1| - 9.9e-22 77.6 0.2 1.2e-21 77.3 0.2 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|330833879|ref|YP_004408607.1| - 3e-08 33.3 0.0 1.2e-07 31.3 0.0 2.0 3 0 0 3 3 3 1 ACT domain Astro_capsid_p2 PF16580.5 gi|330833879|ref|YP_004408607.1| - 0.068 12.6 0.0 0.9 8.9 0.0 2.1 2 0 0 2 2 2 0 C-terminal tail of astrovirus capsid projection or spike AsnC_trans_reg2 PF17805.1 gi|330833880|ref|YP_004408608.1| - 5.3e-32 109.8 0.9 1.5e-15 57.1 0.1 2.9 3 0 0 3 3 3 2 AsnC-like ligand binding domain Sec15 PF04091.12 gi|330833880|ref|YP_004408608.1| - 0.031 13.7 0.0 0.49 9.7 0.0 2.1 2 0 0 2 2 2 0 Exocyst complex subunit Sec15-like Pyr_redox_2 PF07992.14 gi|330833881|ref|YP_004408609.1| - 6.1e-15 55.2 0.3 0.00019 20.8 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330833881|ref|YP_004408609.1| - 9.9e-12 44.3 0.3 2e-05 23.5 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|330833881|ref|YP_004408609.1| - 1e-11 44.7 1.6 7e-07 28.8 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330833881|ref|YP_004408609.1| - 3.4e-09 36.8 0.2 9.9e-08 31.9 0.2 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330833881|ref|YP_004408609.1| - 9e-08 31.6 1.6 0.0012 18.0 0.1 3.1 3 0 0 3 3 3 3 FAD binding domain GIDA PF01134.22 gi|330833881|ref|YP_004408609.1| - 1.3e-07 31.1 0.5 0.0012 18.1 0.0 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.17 gi|330833881|ref|YP_004408609.1| - 0.00033 20.0 0.4 0.0013 18.1 0.1 2.0 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|330833881|ref|YP_004408609.1| - 0.00089 19.4 0.0 0.0062 16.7 0.0 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|330833881|ref|YP_004408609.1| - 0.00092 18.4 0.1 0.0083 15.2 0.1 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|330833881|ref|YP_004408609.1| - 0.0023 17.2 0.0 0.0042 16.4 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|330833881|ref|YP_004408609.1| - 0.0048 16.9 0.0 0.041 13.9 0.0 2.1 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|330833881|ref|YP_004408609.1| - 0.012 14.4 0.1 0.044 12.6 0.1 1.8 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.27 gi|330833881|ref|YP_004408609.1| - 0.022 15.3 0.4 13 6.4 0.1 2.9 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Adenylsucc_synt PF00709.21 gi|330833882|ref|YP_004408610.1| - 3.7e-66 223.8 1.1 2.6e-33 115.6 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DUF1297 PF06973.12 gi|330833883|ref|YP_004408611.1| - 4.9e-76 254.5 0.1 4.9e-76 254.5 0.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|330833883|ref|YP_004408611.1| - 2.1e-46 156.9 0.0 3.2e-46 156.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) DUF1297 PF06973.12 gi|330833884|ref|YP_004408612.1| - 9e-74 247.1 0.1 1.1e-73 246.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|330833884|ref|YP_004408612.1| - 3.4e-39 133.6 0.0 5.4e-39 132.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GARS_A PF01071.19 gi|330833884|ref|YP_004408612.1| - 0.08 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp PF02222.22 gi|330833884|ref|YP_004408612.1| - 0.19 11.3 0.2 5.1 6.6 0.1 2.1 2 0 0 2 2 2 0 ATP-grasp domain Lyase_1 PF00206.20 gi|330833885|ref|YP_004408613.1| - 1.9e-43 149.0 0.0 2.9e-43 148.4 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|330833885|ref|YP_004408613.1| - 1e-14 54.8 0.0 3.8e-14 53.0 0.0 2.1 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C2 PF14698.6 gi|330833885|ref|YP_004408613.1| - 1.8e-05 25.4 0.7 0.00038 21.2 0.0 3.2 4 0 0 4 4 4 1 Argininosuccinate lyase C-terminal ASL_C PF08328.11 gi|330833885|ref|YP_004408613.1| - 0.00018 21.6 0.1 0.00044 20.3 0.1 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal FumaraseC_C PF10415.9 gi|330833885|ref|YP_004408613.1| - 0.0043 17.4 0.3 0.5 10.8 0.0 3.1 3 0 0 3 3 3 1 Fumarase C C-terminus DUF993 PF06187.11 gi|330833885|ref|YP_004408613.1| - 0.065 12.1 0.0 0.11 11.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF993) AIRS PF00586.24 gi|330833886|ref|YP_004408614.1| - 1.5e-10 41.6 0.0 2.8e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|330833886|ref|YP_004408614.1| - 0.0061 16.7 0.0 0.0095 16.1 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Radical_SAM PF04055.21 gi|330833887|ref|YP_004408615.1| - 1.2e-18 68.0 0.0 1.2e-18 68.0 0.0 1.9 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330833887|ref|YP_004408615.1| - 3.7e-06 27.1 1.6 3.7e-06 27.1 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330833887|ref|YP_004408615.1| - 6.9e-06 26.4 0.0 1.7e-05 25.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S13 PF02113.15 gi|330833887|ref|YP_004408615.1| - 0.18 10.5 0.0 0.39 9.4 0.0 1.4 2 0 0 2 2 2 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family RibD_C PF01872.17 gi|330833888|ref|YP_004408616.1| - 4.3e-45 154.0 0.0 4.8e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain STALD PF18185.1 gi|330833888|ref|YP_004408616.1| - 0.0071 15.7 0.1 0.013 14.8 0.1 1.4 2 0 0 2 2 2 1 Sir2- and TIR-associating SLOG family Glyco_trans_1_3 PF13528.6 gi|330833888|ref|YP_004408616.1| - 0.026 13.8 0.1 0.036 13.3 0.1 1.1 1 0 0 1 1 1 0 Glycosyl transferase family 1 Lactamase_B PF00753.27 gi|330833889|ref|YP_004408617.1| - 0.00069 19.7 0.0 0.0081 16.2 0.0 2.1 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily DUF5117 PF17148.4 gi|330833889|ref|YP_004408617.1| - 0.18 11.7 0.0 0.26 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5117) Pribosyltran PF00156.27 gi|330833890|ref|YP_004408618.1| - 2.1e-17 63.1 0.8 4.2e-17 62.1 0.8 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|330833890|ref|YP_004408618.1| - 0.00073 19.5 0.1 0.0022 18.0 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix UPRTase PF14681.6 gi|330833890|ref|YP_004408618.1| - 0.0053 16.2 0.1 0.0095 15.4 0.1 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HTH_23 PF13384.6 gi|330833890|ref|YP_004408618.1| - 0.018 14.8 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain PRTase_2 PF15609.6 gi|330833890|ref|YP_004408618.1| - 0.04 13.4 0.2 0.086 12.3 0.1 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase HTH_31 PF13560.6 gi|330833890|ref|YP_004408618.1| - 0.046 14.1 0.0 0.07 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GatB_N PF02934.15 gi|330833891|ref|YP_004408619.1| - 4.3e-97 324.8 0.0 6e-97 324.3 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|330833891|ref|YP_004408619.1| - 1.7e-38 131.8 4.9 4.2e-38 130.6 4.0 2.0 2 0 0 2 2 2 1 GatB domain OmdA PF13376.6 gi|330833891|ref|YP_004408619.1| - 0.025 14.6 0.1 0.31 11.1 0.0 2.8 3 0 0 3 3 3 0 Bacteriocin-protection, YdeI or OmpD-Associated dCMP_cyt_deam_1 PF00383.23 gi|330833892|ref|YP_004408620.1| - 4.3e-18 65.1 0.0 5.5e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|330833892|ref|YP_004408620.1| - 1.4e-11 44.8 0.1 2.7e-11 43.8 0.0 1.5 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region Ufm1 PF03671.14 gi|330833892|ref|YP_004408620.1| - 0.0016 18.5 0.0 0.0027 17.8 0.0 1.5 1 1 0 1 1 1 1 Ubiquitin fold modifier 1 protein LmjF365940-deam PF14421.6 gi|330833892|ref|YP_004408620.1| - 0.0037 16.9 0.7 0.68 9.5 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases UPRTase PF14681.6 gi|330833893|ref|YP_004408621.1| - 3.6e-47 160.5 0.1 4.2e-47 160.3 0.1 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|330833893|ref|YP_004408621.1| - 4.6e-11 42.5 0.2 6.4e-11 42.0 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|330833893|ref|YP_004408621.1| - 0.13 11.8 0.2 0.69 9.4 0.2 1.9 1 1 0 1 1 1 0 Phosphoribosyl transferase Ribosomal_S28e PF01200.18 gi|330833894|ref|YP_004408622.1| - 5.8e-30 103.1 2.7 7e-30 102.8 2.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e DnaB_2 PF07261.11 gi|330833894|ref|YP_004408622.1| - 0.12 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Replication initiation and membrane attachment KOW PF00467.29 gi|330833894|ref|YP_004408622.1| - 0.26 11.3 2.5 0.59 10.2 0.1 2.3 2 0 0 2 2 2 0 KOW motif Ribosomal_L24e PF01246.20 gi|330833895|ref|YP_004408623.1| - 1e-19 70.5 1.2 1.2e-19 70.3 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|330833895|ref|YP_004408623.1| - 0.00035 20.4 1.2 0.00056 19.8 1.2 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-MYND PF01753.18 gi|330833895|ref|YP_004408623.1| - 0.0028 17.7 0.0 0.0047 17.0 0.0 1.4 1 1 0 1 1 1 1 MYND finger YHS PF04945.13 gi|330833895|ref|YP_004408623.1| - 0.0087 16.1 0.1 0.031 14.4 0.2 1.7 1 1 1 2 2 2 1 YHS domain DUF3268 PF11672.8 gi|330833895|ref|YP_004408623.1| - 0.011 16.0 0.3 0.012 15.9 0.3 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DUF2116 PF09889.9 gi|330833895|ref|YP_004408623.1| - 0.11 12.5 1.6 1.7 8.6 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) NosL PF05573.12 gi|330833895|ref|YP_004408623.1| - 0.15 12.4 0.0 0.18 12.2 0.0 1.1 1 0 0 1 1 1 0 NosL NDK PF00334.19 gi|330833896|ref|YP_004408624.1| - 2.9e-54 182.7 0.1 3.3e-54 182.6 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GTP_EFTU_D4 PF14578.6 gi|330833897|ref|YP_004408625.1| - 1.2e-36 124.4 2.2 3.9e-36 122.8 2.2 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|330833897|ref|YP_004408625.1| - 1.1e-32 113.1 0.0 2.5e-32 112.0 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|330833897|ref|YP_004408625.1| - 3.2e-14 52.9 0.2 9.4e-14 51.4 0.2 1.8 1 0 0 1 1 1 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|330833897|ref|YP_004408625.1| - 1.7e-11 44.3 1.7 2.8e-10 40.4 0.1 3.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330833897|ref|YP_004408625.1| - 1.3e-06 28.5 0.3 4.5e-06 26.7 0.1 2.1 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|330833897|ref|YP_004408625.1| - 5.1e-05 23.5 0.0 0.0001 22.5 0.0 1.5 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Ras PF00071.22 gi|330833897|ref|YP_004408625.1| - 0.002 17.8 0.0 0.0092 15.6 0.0 2.2 1 1 0 1 1 1 1 Ras family RsgA_GTPase PF03193.16 gi|330833897|ref|YP_004408625.1| - 0.0038 17.1 0.7 2.6 8.0 0.1 2.9 2 1 1 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|330833897|ref|YP_004408625.1| - 0.0055 16.8 0.3 0.1 12.6 0.0 2.8 3 0 0 3 3 3 1 Dynamin family Arf PF00025.21 gi|330833897|ref|YP_004408625.1| - 0.0056 16.2 0.3 4.6 6.7 0.0 3.0 2 1 0 2 2 2 2 ADP-ribosylation factor family PduV-EutP PF10662.9 gi|330833897|ref|YP_004408625.1| - 0.0092 15.7 0.4 1.9 8.2 0.0 3.6 3 1 1 4 4 4 1 Ethanolamine utilisation - propanediol utilisation MobB PF03205.14 gi|330833897|ref|YP_004408625.1| - 0.06 13.2 0.6 6.1 6.7 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.10 gi|330833897|ref|YP_004408625.1| - 0.097 12.1 1.5 0.4 10.1 0.3 2.5 2 1 0 2 2 2 0 Signal recognition particle receptor beta subunit malic PF00390.19 gi|330833898|ref|YP_004408626.1| - 9.7e-27 93.9 0.2 7.9e-24 84.4 0.2 2.6 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|330833898|ref|YP_004408626.1| - 8e-25 87.6 0.1 3.8e-24 85.4 0.1 2.0 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain RNA_pol_Rpb5_C PF01191.19 gi|330833899|ref|YP_004408627.1| - 8.8e-29 99.2 0.0 9.8e-29 99.0 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain RNA_pol_Rpb2_6 PF00562.28 gi|330833900|ref|YP_004408628.1| - 1.5e-128 429.2 0.0 2.3e-128 428.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|330833900|ref|YP_004408628.1| - 3.8e-57 193.1 0.0 5.5e-57 192.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|330833900|ref|YP_004408628.1| - 3.3e-38 131.2 0.0 6.2e-38 130.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|330833900|ref|YP_004408628.1| - 1.5e-30 105.5 0.0 2.8e-30 104.5 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|330833900|ref|YP_004408628.1| - 4.9e-24 84.3 0.0 1.3e-23 82.9 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|330833900|ref|YP_004408628.1| - 3.9e-20 71.9 0.8 9.5e-20 70.7 0.8 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|330833900|ref|YP_004408628.1| - 8.3e-10 39.1 0.7 3.1e-09 37.3 0.0 2.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 RNA_pol_Rpb1_1 PF04997.12 gi|330833901|ref|YP_004408629.1| - 2e-98 329.6 0.0 2.8e-98 329.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|330833901|ref|YP_004408629.1| - 7.6e-75 250.7 0.0 2.5e-74 249.0 0.0 1.9 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|330833901|ref|YP_004408629.1| - 2.9e-36 124.8 0.0 6.4e-36 123.7 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|330833901|ref|YP_004408629.1| - 6.7e-33 112.9 0.0 1.8e-32 111.5 0.0 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|330833901|ref|YP_004408629.1| - 1.7e-23 83.4 1.1 2.1e-23 83.1 0.1 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 5 zf-FPG_IleRS PF06827.14 gi|330833901|ref|YP_004408629.1| - 0.044 13.7 5.9 0.53 10.2 0.3 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS CpXC PF14353.6 gi|330833901|ref|YP_004408629.1| - 0.61 10.1 3.7 0.74 9.9 0.1 2.8 2 1 1 3 3 3 0 CpXC protein RNA_pol_Rpb1_5 PF04998.17 gi|330833902|ref|YP_004408630.1| - 2.5e-58 197.6 1.6 3.3e-58 197.2 1.6 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 Ribosomal_L7Ae PF01248.26 gi|330833903|ref|YP_004408631.1| - 1.4e-14 53.6 0.0 1.7e-14 53.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KH_2 PF07650.17 gi|330833904|ref|YP_004408632.1| - 2.4e-19 68.9 4.0 2.5e-15 56.0 0.5 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|330833904|ref|YP_004408632.1| - 1.6e-14 53.7 0.8 1.6e-14 53.7 0.8 2.0 2 1 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|330833904|ref|YP_004408632.1| - 8.3e-13 48.0 0.9 2.2e-05 24.3 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|330833904|ref|YP_004408632.1| - 0.0088 15.8 3.5 0.036 13.9 1.2 2.4 1 1 1 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|330833905|ref|YP_004408633.1| - 1.1e-47 160.3 0.2 1.4e-47 160.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 DNase-RNase PF02577.14 gi|330833906|ref|YP_004408634.1| - 1.2e-07 31.4 0.1 1.6e-07 31.0 0.1 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Tex_N PF09371.10 gi|330833906|ref|YP_004408634.1| - 0.072 12.8 0.3 0.11 12.2 0.3 1.2 1 0 0 1 1 1 0 Tex-like protein N-terminal domain Ribosomal_S7 PF00177.21 gi|330833907|ref|YP_004408635.1| - 1.8e-41 141.3 0.6 2.2e-41 141.0 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.27 gi|330833908|ref|YP_004408636.1| - 5.6e-52 176.1 0.1 6.8e-52 175.8 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|330833908|ref|YP_004408636.1| - 8.8e-38 129.1 0.0 2.4e-37 127.6 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|330833908|ref|YP_004408636.1| - 1.8e-19 69.9 3.3 1.1e-17 64.2 1.6 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330833908|ref|YP_004408636.1| - 0.00011 22.3 0.1 0.00045 20.3 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU_D4 PF14578.6 gi|330833908|ref|YP_004408636.1| - 0.0023 17.8 2.8 0.0094 15.8 1.5 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Septin PF00735.18 gi|330833908|ref|YP_004408636.1| - 0.0046 16.3 0.2 0.018 14.4 0.2 1.9 1 1 0 1 1 1 1 Septin Dynamin_N PF00350.23 gi|330833908|ref|YP_004408636.1| - 0.0065 16.5 0.1 2.7 8.0 0.0 2.7 1 1 1 2 2 2 2 Dynamin family Ribosomal_S10 PF00338.22 gi|330833909|ref|YP_004408637.1| - 9.2e-26 89.9 0.1 1e-25 89.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GATase_3 PF07685.14 gi|330833910|ref|YP_004408638.1| - 6.2e-31 107.5 0.0 9.6e-31 106.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|330833910|ref|YP_004408638.1| - 7.8e-12 45.4 0.0 7.6e-07 29.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|330833910|ref|YP_004408638.1| - 1.8e-11 44.2 0.0 3.8e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2208 PF09973.9 gi|330833911|ref|YP_004408639.1| - 1.3e-71 240.9 21.7 1.4e-71 240.8 21.7 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) DHBP_synthase PF00926.19 gi|330833912|ref|YP_004408640.1| - 8.8e-44 149.3 0.0 1e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.19 gi|330833913|ref|YP_004408641.1| - 5.2e-11 42.5 0.0 7.2e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|330833914|ref|YP_004408642.1| - 3.8e-37 127.3 0.1 4.2e-37 127.1 0.1 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase GCH_III PF05165.12 gi|330833915|ref|YP_004408643.1| - 2.2e-37 128.7 0.0 3.1e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase III SUB1_ProdP9 PF18213.1 gi|330833915|ref|YP_004408643.1| - 0.011 15.6 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 SUB1 protease Prodomain ProdP9 mCpol PF18182.1 gi|330833915|ref|YP_004408643.1| - 0.016 15.5 0.0 0.17 12.2 0.0 2.3 2 1 1 3 3 3 0 minimal CRISPR polymerase domain Amidohydro_1 PF01979.20 gi|330833916|ref|YP_004408644.1| - 2.7e-17 63.1 0.0 2.2e-16 60.1 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|330833916|ref|YP_004408644.1| - 0.0009 18.7 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|330833916|ref|YP_004408644.1| - 0.013 15.0 0.0 0.94 8.9 0.0 2.1 2 0 0 2 2 2 0 Amidohydrolase family PCNA_N PF00705.18 gi|330833917|ref|YP_004408645.1| - 1.8e-07 30.9 1.0 4.3e-07 29.7 0.4 1.8 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|330833917|ref|YP_004408645.1| - 2.2e-05 24.6 0.4 0.12 12.6 0.0 2.6 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|330833917|ref|YP_004408645.1| - 0.00087 18.8 0.3 0.038 13.4 0.1 2.2 2 0 0 2 2 2 1 Rad9 Hus1 PF04005.12 gi|330833917|ref|YP_004408645.1| - 0.005 16.0 0.1 0.017 14.2 0.0 1.7 1 1 1 2 2 2 1 Hus1-like protein OspE PF02471.17 gi|330833917|ref|YP_004408645.1| - 0.044 14.0 0.6 0.072 13.3 0.6 1.4 1 0 0 1 1 1 0 Borrelia outer surface protein E Flot PF15975.5 gi|330833917|ref|YP_004408645.1| - 0.087 13.0 1.4 0.36 11.0 0.1 2.0 1 1 1 2 2 2 0 Flotillin MazE_antitoxin PF04014.18 gi|330833917|ref|YP_004408645.1| - 0.13 12.2 1.8 0.27 11.2 0.2 2.2 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin RNA_pol_Rpo13 PF12136.8 gi|330833918|ref|YP_004408646.1| - 6e-14 51.7 0.1 6e-14 51.7 0.1 2.1 1 1 1 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain DUF87 PF01935.17 gi|330833919|ref|YP_004408647.1| - 9.3e-11 42.3 1.6 3e-10 40.6 1.5 2.0 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|330833919|ref|YP_004408647.1| - 1e-07 31.3 1.3 0.0011 18.0 0.0 2.8 2 1 0 2 2 2 2 AAA-like domain AAA_22 PF13401.6 gi|330833919|ref|YP_004408647.1| - 0.00021 21.6 0.0 0.036 14.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain TrwB_AAD_bind PF10412.9 gi|330833919|ref|YP_004408647.1| - 0.00025 20.1 0.1 0.15 10.9 0.0 2.5 2 1 1 3 3 3 2 Type IV secretion-system coupling protein DNA-binding domain RsgA_GTPase PF03193.16 gi|330833919|ref|YP_004408647.1| - 0.0024 17.8 0.0 0.0069 16.3 0.0 1.7 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|330833919|ref|YP_004408647.1| - 0.004 17.6 0.0 0.0064 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain TraG-D_C PF12696.7 gi|330833919|ref|YP_004408647.1| - 0.0076 16.2 0.0 0.019 15.0 0.0 1.7 1 0 0 1 1 1 1 TraM recognition site of TraD and TraG ABC_tran PF00005.27 gi|330833919|ref|YP_004408647.1| - 0.0082 16.7 0.0 0.021 15.4 0.0 1.6 1 0 0 1 1 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 gi|330833919|ref|YP_004408647.1| - 0.013 14.9 0.0 0.27 10.5 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|330833919|ref|YP_004408647.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330833919|ref|YP_004408647.1| - 0.059 13.8 0.1 0.4 11.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|330833919|ref|YP_004408647.1| - 0.081 12.7 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|330833919|ref|YP_004408647.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Cytidylate_kin PF02224.18 gi|330833919|ref|YP_004408647.1| - 0.15 11.8 0.1 15 5.2 0.0 2.2 2 0 0 2 2 2 0 Cytidylate kinase DEAD PF00270.29 gi|330833920|ref|YP_004408648.1| - 1.8e-36 125.6 0.0 7.2e-35 120.3 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330833920|ref|YP_004408648.1| - 2.2e-21 76.3 1.0 8e-20 71.3 0.1 3.2 2 1 1 3 3 3 1 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|330833920|ref|YP_004408648.1| - 1.4e-12 47.8 0.0 1.5e-11 44.5 0.0 2.7 3 1 0 3 3 3 1 DEAD/H associated ResIII PF04851.15 gi|330833920|ref|YP_004408648.1| - 2.9e-08 33.9 0.0 7.9e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|330833920|ref|YP_004408648.1| - 8.8e-06 26.1 0.0 0.0002 21.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF4373 PF14297.6 gi|330833920|ref|YP_004408648.1| - 0.0096 16.7 0.0 0.039 14.8 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4373) DUF1192 PF06698.11 gi|330833920|ref|YP_004408648.1| - 0.28 11.2 4.2 0.16 12.0 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) KOW PF00467.29 gi|330833921|ref|YP_004408649.1| - 0.0026 17.7 0.1 0.0068 16.3 0.1 1.7 1 0 0 1 1 1 1 KOW motif YbbR PF07949.12 gi|330833921|ref|YP_004408649.1| - 0.033 14.5 0.3 0.045 14.1 0.3 1.3 1 0 0 1 1 1 0 YbbR-like protein Ribosomal_L14e PF01929.17 gi|330833921|ref|YP_004408649.1| - 0.073 13.6 0.1 0.12 12.8 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein L14 DKCLD PF08068.12 gi|330833922|ref|YP_004408650.1| - 2.3e-12 46.8 0.5 6.1e-12 45.4 0.3 1.7 1 1 1 2 2 2 1 DKCLD (NUC011) domain TruB_C_2 PF16198.5 gi|330833923|ref|YP_004408651.1| - 2e-23 82.3 0.2 3.1e-23 81.7 0.2 1.3 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|330833923|ref|YP_004408651.1| - 1.2e-13 50.7 0.1 2.3e-13 49.9 0.1 1.5 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.18 gi|330833923|ref|YP_004408651.1| - 4.7e-07 30.3 0.1 1.4e-05 25.5 0.1 2.2 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) MTS PF05175.14 gi|330833924|ref|YP_004408652.1| - 6e-36 123.5 0.0 6.8e-36 123.3 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|330833924|ref|YP_004408652.1| - 7.6e-10 38.9 0.0 1.2e-09 38.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330833924|ref|YP_004408652.1| - 1.6e-09 37.7 0.0 2.1e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330833924|ref|YP_004408652.1| - 7.5e-08 32.1 0.0 8.8e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|330833924|ref|YP_004408652.1| - 1.6e-06 28.7 0.0 3.9e-06 27.5 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain Met_10 PF02475.16 gi|330833924|ref|YP_004408652.1| - 5.4e-06 26.3 0.0 6e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Cons_hypoth95 PF03602.15 gi|330833924|ref|YP_004408652.1| - 6e-06 26.0 0.0 7.3e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_4 PF02390.17 gi|330833924|ref|YP_004408652.1| - 7.5e-05 22.3 0.0 0.012 15.1 0.0 2.1 1 1 0 2 2 2 1 Putative methyltransferase Methyltransf_15 PF09445.10 gi|330833924|ref|YP_004408652.1| - 9.5e-05 22.0 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_16 PF10294.9 gi|330833924|ref|YP_004408652.1| - 0.00022 21.0 0.0 0.00036 20.3 0.0 1.2 1 0 0 1 1 1 1 Lysine methyltransferase GidB PF02527.15 gi|330833924|ref|YP_004408652.1| - 0.00046 19.6 0.1 0.00065 19.1 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_12 PF08242.12 gi|330833924|ref|YP_004408652.1| - 0.001 19.8 0.0 0.0015 19.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330833924|ref|YP_004408652.1| - 0.002 18.7 0.0 0.0028 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|330833924|ref|YP_004408652.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|330833924|ref|YP_004408652.1| - 0.0053 16.3 0.0 0.0076 15.8 0.0 1.2 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase TehB PF03848.14 gi|330833924|ref|YP_004408652.1| - 0.0077 15.7 0.0 0.013 14.9 0.0 1.4 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_23 PF13489.6 gi|330833924|ref|YP_004408652.1| - 0.0085 15.9 0.0 0.009 15.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|330833924|ref|YP_004408652.1| - 0.023 14.4 0.0 0.039 13.6 0.0 1.3 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DOT1 PF08123.13 gi|330833924|ref|YP_004408652.1| - 0.046 13.2 0.0 3.3 7.2 0.0 2.1 2 0 0 2 2 2 0 Histone methylation protein DOT1 Dam PF05869.11 gi|330833924|ref|YP_004408652.1| - 0.14 11.7 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) PCNA_C PF02747.15 gi|330833925|ref|YP_004408653.1| - 6.3e-16 58.7 0.5 1.2e-11 44.8 0.0 2.3 2 0 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|330833925|ref|YP_004408653.1| - 3.7e-15 55.7 0.4 1.7e-14 53.7 0.1 1.9 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|330833925|ref|YP_004408653.1| - 8.4e-06 25.4 0.3 1.3e-05 24.8 0.3 1.4 1 1 0 1 1 1 1 Rad9 Rad1 PF02144.16 gi|330833925|ref|YP_004408653.1| - 8.8e-05 21.7 1.6 0.054 12.6 0.1 2.2 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 DNA_pol3_beta_3 PF02768.15 gi|330833925|ref|YP_004408653.1| - 0.0039 17.0 2.3 0.16 11.8 0.1 2.5 2 1 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain Meth_synt_1 PF08267.12 gi|330833926|ref|YP_004408654.1| - 6.9e-20 71.8 1.2 2.3e-19 70.1 1.1 1.7 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|330833926|ref|YP_004408654.1| - 0.0048 16.2 0.0 0.012 14.9 0.0 1.7 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_2 PF01717.18 gi|330833927|ref|YP_004408655.1| - 1.9e-62 211.4 0.0 2.4e-62 211.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|330833927|ref|YP_004408655.1| - 1.5e-13 51.0 0.8 4.6e-13 49.4 0.6 1.7 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|330833927|ref|YP_004408655.1| - 3.3e-05 23.2 0.0 4.4e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Ribosomal_S13_N PF08069.12 gi|330833928|ref|YP_004408656.1| - 1.1e-22 79.8 0.3 2.7e-22 78.6 0.1 1.8 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|330833928|ref|YP_004408656.1| - 6.1e-12 45.6 0.1 8.9e-12 45.1 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 RVT_3 PF13456.6 gi|330833929|ref|YP_004408657.1| - 3.6e-17 62.3 0.0 3.8e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|330833929|ref|YP_004408657.1| - 0.002 18.3 0.0 0.0029 17.8 0.0 1.2 1 0 0 1 1 1 1 RNase H CbiX PF01903.17 gi|330833930|ref|YP_004408658.1| - 7.7e-24 84.1 0.0 9.4e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|330833930|ref|YP_004408658.1| - 0.00053 19.4 0.0 0.00059 19.2 0.0 1.1 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) Tna_leader PF08053.11 gi|330833930|ref|YP_004408658.1| - 0.11 12.4 0.4 0.25 11.4 0.4 1.6 1 0 0 1 1 1 0 Tryptophanase operon leader peptide Ribosomal_S6e PF01092.19 gi|330833931|ref|YP_004408659.1| - 2.6e-24 85.6 0.3 1.4e-23 83.2 0.1 2.1 2 1 0 2 2 2 1 Ribosomal protein S6e Molydop_binding PF01568.21 gi|330833931|ref|YP_004408659.1| - 0.076 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Molydopterin dinucleotide binding domain GTP_EFTU PF00009.27 gi|330833932|ref|YP_004408660.1| - 3.2e-29 101.8 0.0 1.1e-28 100.1 0.0 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|330833932|ref|YP_004408660.1| - 6.2e-27 93.7 0.3 1.8e-26 92.2 0.3 1.9 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|330833932|ref|YP_004408660.1| - 2e-07 31.3 0.1 3.6e-06 27.3 0.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|330833932|ref|YP_004408660.1| - 1.6e-05 24.8 0.1 0.00099 19.0 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|330833932|ref|YP_004408660.1| - 0.00031 20.8 0.0 0.00058 19.9 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|330833932|ref|YP_004408660.1| - 0.0017 18.1 0.2 0.84 9.4 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|330833932|ref|YP_004408660.1| - 0.015 15.3 0.1 0.037 14.0 0.1 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|330833932|ref|YP_004408660.1| - 0.095 12.2 0.5 3.9 7.0 0.1 2.3 2 0 0 2 2 2 0 Ferrous iron transport protein B PIN_9 PF18477.1 gi|330833933|ref|YP_004408661.1| - 7.9e-10 39.1 0.0 9.5e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|330833933|ref|YP_004408661.1| - 0.013 15.8 0.2 0.33 11.3 0.2 2.0 1 1 0 1 1 1 0 PIN domain SHS2_Rpb7-N PF03876.17 gi|330833934|ref|YP_004408662.1| - 9.8e-15 54.7 0.0 1.6e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|330833934|ref|YP_004408662.1| - 1.5e-14 54.1 0.4 2.8e-14 53.2 0.4 1.5 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|330833934|ref|YP_004408662.1| - 0.0034 17.6 0.0 0.0081 16.4 0.0 1.6 1 1 1 2 2 2 1 RNA polymerase III subunit Rpc25 DUF359 PF04019.12 gi|330833935|ref|YP_004408663.1| - 1e-30 105.9 0.0 1.2e-30 105.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF359) PhosphMutase PF10143.9 gi|330833936|ref|YP_004408664.1| - 3.5e-53 180.0 0.0 6e-53 179.2 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|330833936|ref|YP_004408664.1| - 7.9e-37 126.9 0.0 9.8e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|330833936|ref|YP_004408664.1| - 0.0024 16.9 0.6 0.005 15.8 0.1 1.8 2 1 0 2 2 2 1 Alkaline phosphatase Sulfatase PF00884.23 gi|330833936|ref|YP_004408664.1| - 0.017 14.6 0.5 0.24 10.8 0.1 2.6 3 0 0 3 3 3 0 Sulfatase Phosphodiest PF01663.22 gi|330833936|ref|YP_004408664.1| - 0.038 13.6 0.0 0.055 13.0 0.0 1.3 1 0 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase AAA PF00004.29 gi|330833937|ref|YP_004408665.1| - 4.4e-97 321.6 0.0 3.9e-48 163.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330833937|ref|YP_004408665.1| - 1e-29 102.1 1.5 9.2e-14 51.0 0.1 2.9 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|330833937|ref|YP_004408665.1| - 1.3e-23 83.0 0.1 4.6e-23 81.2 0.1 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|330833937|ref|YP_004408665.1| - 5.7e-18 65.2 0.1 1.5e-08 34.6 0.0 3.6 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|330833937|ref|YP_004408665.1| - 2.1e-14 54.2 0.0 2.7e-06 27.9 0.0 3.6 2 1 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|330833937|ref|YP_004408665.1| - 9.7e-14 51.8 0.0 1.7e-06 28.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|330833937|ref|YP_004408665.1| - 1.6e-13 50.2 0.4 6.7e-13 48.2 0.1 2.3 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.6 gi|330833937|ref|YP_004408665.1| - 2.1e-11 44.3 0.9 0.0065 16.8 0.0 4.8 3 2 0 3 3 2 2 AAA domain AAA_5 PF07728.14 gi|330833937|ref|YP_004408665.1| - 6.1e-11 42.5 0.7 0.00076 19.5 0.1 4.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330833937|ref|YP_004408665.1| - 6.5e-11 42.6 0.0 0.00027 21.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|330833937|ref|YP_004408665.1| - 1.1e-10 41.3 0.1 0.00049 19.4 0.0 2.8 3 0 0 3 3 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|330833937|ref|YP_004408665.1| - 2.6e-10 40.5 0.0 0.00037 20.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|330833937|ref|YP_004408665.1| - 1.2e-08 34.9 0.0 0.0073 16.1 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|330833937|ref|YP_004408665.1| - 3.3e-08 34.1 0.0 0.0028 18.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.6 gi|330833937|ref|YP_004408665.1| - 2.2e-07 31.2 0.0 0.027 14.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|330833937|ref|YP_004408665.1| - 2.5e-07 31.1 0.0 0.0047 17.3 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|330833937|ref|YP_004408665.1| - 3.4e-07 29.9 0.9 0.0097 15.3 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.10 gi|330833937|ref|YP_004408665.1| - 1.7e-06 27.9 1.1 0.031 14.3 0.0 3.0 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_3 PF07726.11 gi|330833937|ref|YP_004408665.1| - 3e-06 27.1 0.0 0.11 12.3 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|330833937|ref|YP_004408665.1| - 3.5e-06 26.9 0.0 0.1 12.3 0.0 2.6 2 1 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|330833937|ref|YP_004408665.1| - 4e-06 26.8 0.0 0.083 12.9 0.0 2.7 2 1 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|330833937|ref|YP_004408665.1| - 8e-06 25.9 0.4 0.32 10.9 0.0 3.5 4 0 0 4 4 3 2 NACHT domain Sigma54_activat PF00158.26 gi|330833937|ref|YP_004408665.1| - 1.5e-05 24.8 0.1 0.46 10.2 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain AAA_25 PF13481.6 gi|330833937|ref|YP_004408665.1| - 1.5e-05 24.7 3.0 0.12 11.9 0.1 3.5 2 2 0 3 3 3 2 AAA domain Zeta_toxin PF06414.12 gi|330833937|ref|YP_004408665.1| - 2.4e-05 23.7 0.1 0.17 11.1 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_7 PF12775.7 gi|330833937|ref|YP_004408665.1| - 3.9e-05 23.3 0.0 0.26 10.8 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|330833937|ref|YP_004408665.1| - 4.4e-05 22.8 0.0 0.12 11.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|330833937|ref|YP_004408665.1| - 5.5e-05 22.6 0.1 0.13 11.6 0.0 3.3 3 1 0 3 3 3 1 KaiC ATPase_2 PF01637.18 gi|330833937|ref|YP_004408665.1| - 8.5e-05 22.6 0.1 0.31 10.9 0.0 4.2 3 2 1 4 4 4 1 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|330833937|ref|YP_004408665.1| - 0.00011 22.8 0.0 0.85 10.1 0.0 2.9 3 0 0 3 3 2 2 ABC transporter Bac_DnaA PF00308.18 gi|330833937|ref|YP_004408665.1| - 0.00016 21.6 0.0 0.047 13.5 0.0 3.0 3 1 0 3 3 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.17 gi|330833937|ref|YP_004408665.1| - 0.00027 20.1 0.0 0.67 9.0 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|330833937|ref|YP_004408665.1| - 0.00044 20.7 0.0 0.6 10.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain PhoH PF02562.16 gi|330833937|ref|YP_004408665.1| - 0.00094 18.7 0.7 0.28 10.6 0.2 2.5 2 0 0 2 2 2 1 PhoH-like protein AFG1_ATPase PF03969.16 gi|330833937|ref|YP_004408665.1| - 0.0015 17.5 0.0 0.98 8.2 0.0 2.6 3 0 0 3 3 2 1 AFG1-like ATPase PduV-EutP PF10662.9 gi|330833937|ref|YP_004408665.1| - 0.0016 18.2 0.2 13 5.5 0.0 3.4 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Sigma54_activ_2 PF14532.6 gi|330833937|ref|YP_004408665.1| - 0.0016 18.6 0.0 2.9 8.0 0.0 2.6 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_19 PF13245.6 gi|330833937|ref|YP_004408665.1| - 0.0041 17.5 0.3 1.9 8.8 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|330833937|ref|YP_004408665.1| - 0.0043 16.9 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|330833937|ref|YP_004408665.1| - 0.0057 16.1 0.0 3.7 6.9 0.0 3.3 5 0 0 5 5 2 0 Bacterial TniB protein AAA_30 PF13604.6 gi|330833937|ref|YP_004408665.1| - 0.006 16.3 0.1 2.5 7.8 0.1 2.7 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|330833937|ref|YP_004408665.1| - 0.0072 15.5 0.0 2.1 7.5 0.0 2.5 2 0 0 2 2 2 1 NB-ARC domain UFD1 PF03152.14 gi|330833937|ref|YP_004408665.1| - 0.0078 15.7 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 IPT PF01745.16 gi|330833937|ref|YP_004408665.1| - 0.008 15.6 0.1 1.3 8.3 0.1 2.3 2 0 0 2 2 2 1 Isopentenyl transferase Rad17 PF03215.15 gi|330833937|ref|YP_004408665.1| - 0.01 15.8 0.0 6.9 6.5 0.0 2.9 2 1 0 2 2 2 0 Rad17 P-loop domain DUF2075 PF09848.9 gi|330833937|ref|YP_004408665.1| - 0.014 14.7 0.0 2.4 7.3 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|330833937|ref|YP_004408665.1| - 0.024 14.6 3.3 6.4 6.7 0.0 3.9 3 2 1 4 4 3 0 NTPase SKI PF01202.22 gi|330833937|ref|YP_004408665.1| - 0.028 14.5 0.0 8.4 6.5 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin PF02224.18 gi|330833937|ref|YP_004408665.1| - 0.03 14.0 0.1 7.7 6.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase AAA_29 PF13555.6 gi|330833937|ref|YP_004408665.1| - 0.039 13.7 0.0 8.7 6.2 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain Guanylate_kin PF00625.21 gi|330833937|ref|YP_004408665.1| - 0.04 13.6 0.2 14 5.4 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase Molydop_binding PF01568.21 gi|330833937|ref|YP_004408665.1| - 0.044 13.8 0.0 0.17 12.0 0.0 2.0 1 1 0 1 1 1 0 Molydopterin dinucleotide binding domain Viral_helicase1 PF01443.18 gi|330833937|ref|YP_004408665.1| - 0.057 13.1 0.0 2.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin2 PF13189.6 gi|330833937|ref|YP_004408665.1| - 0.092 12.9 0.0 8.6 6.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family MMR_HSR1 PF01926.23 gi|330833937|ref|YP_004408665.1| - 0.094 12.8 0.0 3.6 7.7 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_6 PF12774.7 gi|330833937|ref|YP_004408665.1| - 0.096 11.6 0.0 5.6 5.8 0.0 2.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Topoisom_bac PF01131.20 gi|330833938|ref|YP_004408666.1| - 1.2e-68 232.1 0.6 1.5e-55 188.9 0.1 2.4 2 0 0 2 2 2 2 DNA topoisomerase Toprim PF01751.22 gi|330833938|ref|YP_004408666.1| - 2.7e-26 91.8 0.0 1e-25 90.0 0.0 2.1 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.29 gi|330833938|ref|YP_004408666.1| - 7.3e-12 45.4 0.0 2.7e-11 43.6 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|330833938|ref|YP_004408666.1| - 3.6e-09 35.9 0.6 9.5e-09 34.5 0.6 1.6 1 0 0 1 1 1 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|330833938|ref|YP_004408666.1| - 8.6e-06 26.1 0.0 9.9 6.6 0.0 4.8 4 0 0 4 4 4 0 Helicase conserved C-terminal domain Terminase_GpA PF05876.12 gi|330833938|ref|YP_004408666.1| - 0.00038 19.1 0.0 0.00065 18.4 0.0 1.2 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) ResIII PF04851.15 gi|330833938|ref|YP_004408666.1| - 0.0015 18.5 0.0 0.004 17.2 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit zf-ribbon_3 PF13248.6 gi|330833938|ref|YP_004408666.1| - 0.01 15.2 3.3 0.75 9.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain AAA_25 PF13481.6 gi|330833938|ref|YP_004408666.1| - 0.013 15.1 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|330833938|ref|YP_004408666.1| - 0.015 15.6 0.0 0.092 13.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Toprim_4 PF13662.6 gi|330833938|ref|YP_004408666.1| - 0.14 12.7 0.0 0.37 11.3 0.0 1.8 1 0 0 1 1 1 0 Toprim domain AAA_11 PF13086.6 gi|330833938|ref|YP_004408666.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DNA_ligase_ZBD PF03119.16 gi|330833938|ref|YP_004408666.1| - 0.18 11.8 1.1 9.7 6.3 0.0 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.6 gi|330833938|ref|YP_004408666.1| - 0.2 12.3 0.8 6.3 7.6 0.1 2.7 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 IFT81_CH PF18383.1 gi|330833938|ref|YP_004408666.1| - 0.2 11.9 5.5 7.6 6.8 0.1 4.0 5 0 0 5 5 5 0 Intraflagellar transport 81 calponin homology domain OrfB_Zn_ribbon PF07282.11 gi|330833938|ref|YP_004408666.1| - 0.26 11.3 4.9 2.2 8.3 0.9 2.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|330833938|ref|YP_004408666.1| - 0.36 10.8 2.2 13 5.8 0.3 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain ProRS-C_2 PF09181.10 gi|330833938|ref|YP_004408666.1| - 1.2 9.3 6.6 19 5.5 1.5 3.5 3 0 0 3 3 3 0 Prolyl-tRNA synthetase, C-terminal TF_Zn_Ribbon PF08271.12 gi|330833938|ref|YP_004408666.1| - 3.9 7.1 7.9 5.1 6.7 0.5 2.7 2 0 0 2 2 2 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|330833938|ref|YP_004408666.1| - 4.2 7.6 6.9 27 5.0 1.7 2.7 2 0 0 2 2 2 0 Zinc ribbon domain CN_hydrolase PF00795.22 gi|330833939|ref|YP_004408667.1| - 2.2e-18 66.6 0.0 2.8e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Ribosomal_S25 PF03297.15 gi|330833940|ref|YP_004408668.1| - 5.1e-19 68.4 11.5 6e-19 68.1 11.5 1.1 1 0 0 1 1 1 1 S25 ribosomal protein DUF3715 PF12509.8 gi|330833940|ref|YP_004408668.1| - 0.0027 17.7 0.8 0.0034 17.4 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3715) Rrf2 PF02082.20 gi|330833940|ref|YP_004408668.1| - 0.006 16.9 1.4 0.97 9.8 0.1 2.2 1 1 1 2 2 2 2 Transcriptional regulator WTX PF09422.10 gi|330833940|ref|YP_004408668.1| - 0.021 14.0 1.9 0.022 13.8 1.9 1.1 1 0 0 1 1 1 0 WTX protein Blo-t-5 PF11642.8 gi|330833940|ref|YP_004408668.1| - 0.024 14.6 2.6 0.029 14.3 2.6 1.1 1 0 0 1 1 1 0 Mite allergen Blo t 5 TrmB PF01978.19 gi|330833940|ref|YP_004408668.1| - 0.039 13.8 0.4 0.092 12.6 0.2 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|330833940|ref|YP_004408668.1| - 0.042 13.8 0.5 0.46 10.5 0.1 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain IF-2B PF01008.17 gi|330833940|ref|YP_004408668.1| - 0.058 12.6 3.7 0.073 12.3 3.7 1.0 1 0 0 1 1 1 0 Initiation factor 2 subunit family EloA-BP1 PF15870.5 gi|330833940|ref|YP_004408668.1| - 0.1 12.8 5.5 0.14 12.4 5.3 1.3 1 1 0 1 1 1 0 ElonginA binding-protein 1 Tctex-1 PF03645.13 gi|330833940|ref|YP_004408668.1| - 0.85 9.9 5.5 2.9 8.2 5.1 1.8 1 1 1 2 2 2 0 Tctex-1 family TrmB PF01978.19 gi|330833941|ref|YP_004408669.1| - 2.5e-19 68.9 0.0 5.4e-19 67.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330833941|ref|YP_004408669.1| - 6.1e-09 35.3 1.0 1.4e-08 34.1 1.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_28 PF13518.6 gi|330833941|ref|YP_004408669.1| - 6.2e-05 23.0 0.0 0.00062 19.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|330833941|ref|YP_004408669.1| - 0.00018 21.9 0.0 0.00036 20.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|330833941|ref|YP_004408669.1| - 0.0013 18.6 0.1 0.0046 16.9 0.1 2.0 1 1 1 2 2 2 1 MarR family MarR_2 PF12802.7 gi|330833941|ref|YP_004408669.1| - 0.0018 18.1 0.0 0.0053 16.6 0.0 1.8 1 1 1 2 2 2 1 MarR family HTH_29 PF13551.6 gi|330833941|ref|YP_004408669.1| - 0.002 18.1 0.0 0.038 14.0 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|330833941|ref|YP_004408669.1| - 0.0065 16.4 0.0 0.035 14.1 0.0 2.2 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_34 PF13601.6 gi|330833941|ref|YP_004408669.1| - 0.0067 16.6 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|330833941|ref|YP_004408669.1| - 0.0075 16.6 0.1 0.021 15.2 0.0 1.9 2 1 0 2 2 2 1 Penicillinase repressor HTH_36 PF13730.6 gi|330833941|ref|YP_004408669.1| - 0.0076 16.2 0.9 0.031 14.2 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Mga PF05043.13 gi|330833941|ref|YP_004408669.1| - 0.011 16.3 0.2 0.079 13.6 0.1 2.3 2 0 0 2 2 2 0 Mga helix-turn-helix domain PadR PF03551.14 gi|330833941|ref|YP_004408669.1| - 0.027 14.5 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family FtsK_gamma PF09397.10 gi|330833941|ref|YP_004408669.1| - 0.036 13.9 0.0 0.29 11.0 0.0 2.2 2 0 0 2 2 2 0 Ftsk gamma domain HTH_45 PF14947.6 gi|330833941|ref|YP_004408669.1| - 0.052 13.5 0.8 0.13 12.3 0.3 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_9 PF08221.11 gi|330833941|ref|YP_004408669.1| - 0.06 13.5 0.1 0.29 11.3 0.1 2.1 3 0 0 3 3 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain AbiEi_4 PF13338.6 gi|330833941|ref|YP_004408669.1| - 0.064 13.4 0.1 0.49 10.6 0.1 2.4 3 0 0 3 3 3 0 Transcriptional regulator, AbiEi antitoxin B-block_TFIIIC PF04182.12 gi|330833941|ref|YP_004408669.1| - 0.079 13.1 0.1 0.45 10.7 0.0 2.1 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_10 PF04967.12 gi|330833941|ref|YP_004408669.1| - 0.08 12.8 0.1 1.4 8.7 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain FeoC PF09012.10 gi|330833941|ref|YP_004408669.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_IclR PF09339.10 gi|330833941|ref|YP_004408669.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain FUR PF01475.19 gi|330833941|ref|YP_004408669.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 Ferric uptake regulator family Mor PF08765.11 gi|330833941|ref|YP_004408669.1| - 0.17 11.9 0.0 0.48 10.4 0.0 1.7 1 0 0 1 1 1 0 Mor transcription activator family NUMOD1 PF07453.13 gi|330833941|ref|YP_004408669.1| - 0.17 12.2 2.2 4.5 7.7 0.5 2.5 2 0 0 2 2 2 0 NUMOD1 domain RHH_1 PF01402.21 gi|330833942|ref|YP_004408670.1| - 9.3e-07 28.6 0.0 1.2e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|330833942|ref|YP_004408670.1| - 0.00013 22.3 0.0 0.00013 22.3 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_8 PF17723.1 gi|330833942|ref|YP_004408670.1| - 0.0045 17.2 0.0 0.0046 17.1 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family VapB_antitoxin PF09957.9 gi|330833942|ref|YP_004408670.1| - 0.052 13.5 0.0 0.075 13.0 0.0 1.3 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB HicB_lk_antitox PF15919.5 gi|330833942|ref|YP_004408670.1| - 0.1 12.7 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GCD14 PF08704.10 gi|330833943|ref|YP_004408671.1| - 1.6e-34 119.7 0.0 2.1e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.19 gi|330833943|ref|YP_004408671.1| - 8.4e-13 48.5 0.0 1.2e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|330833943|ref|YP_004408671.1| - 6.3e-12 45.5 0.0 8.8e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330833943|ref|YP_004408671.1| - 4.9e-08 33.6 0.0 9.9e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|330833943|ref|YP_004408671.1| - 3e-07 31.4 0.0 8.4e-06 26.8 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain GCD14_N PF14801.6 gi|330833943|ref|YP_004408671.1| - 6.2e-06 26.0 0.1 1.6e-05 24.6 0.0 1.7 2 0 0 2 2 1 1 tRNA methyltransferase complex GCD14 subunit N-term Methyltransf_11 PF08241.12 gi|330833943|ref|YP_004408671.1| - 1.8e-05 25.3 0.0 3.4e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|330833943|ref|YP_004408671.1| - 4.4e-05 23.4 0.0 7.6e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330833943|ref|YP_004408671.1| - 5.3e-05 22.7 0.0 8.9e-05 21.9 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|330833943|ref|YP_004408671.1| - 0.00035 20.6 0.0 0.00046 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|330833943|ref|YP_004408671.1| - 0.0012 18.0 0.0 0.0019 17.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|330833943|ref|YP_004408671.1| - 0.0018 17.4 0.0 0.0027 16.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|330833943|ref|YP_004408671.1| - 0.0082 15.7 0.0 0.049 13.2 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|330833943|ref|YP_004408671.1| - 0.019 14.6 0.0 0.031 13.9 0.0 1.3 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Methyltransf_12 PF08242.12 gi|330833943|ref|YP_004408671.1| - 0.023 15.4 0.0 0.088 13.6 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|330833943|ref|YP_004408671.1| - 0.03 14.1 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase PrmA PF06325.13 gi|330833943|ref|YP_004408671.1| - 0.032 13.6 0.0 0.042 13.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|330833943|ref|YP_004408671.1| - 0.039 13.3 0.0 0.066 12.5 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase UPF0020 PF01170.18 gi|330833943|ref|YP_004408671.1| - 0.048 13.4 0.0 0.092 12.4 0.0 1.4 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.10 gi|330833943|ref|YP_004408671.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.6 gi|330833943|ref|YP_004408671.1| - 0.12 12.2 0.0 0.53 10.1 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain V-ATPase_G_2 PF16999.5 gi|330833944|ref|YP_004408672.1| - 0.01 16.2 10.1 0.012 16.0 10.1 1.1 1 0 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit RRP7 PF12923.7 gi|330833944|ref|YP_004408672.1| - 0.03 14.5 3.7 0.063 13.4 0.7 2.2 2 0 0 2 2 2 0 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain Lipoprotein_3 PF00938.17 gi|330833944|ref|YP_004408672.1| - 0.03 14.5 3.2 0.037 14.2 1.5 2.0 1 1 1 2 2 2 0 Lipoprotein Senescence PF06911.12 gi|330833944|ref|YP_004408672.1| - 0.054 13.8 0.4 0.059 13.7 0.4 1.1 1 0 0 1 1 1 0 Senescence-associated protein Mod_r PF07200.13 gi|330833944|ref|YP_004408672.1| - 0.062 13.4 10.6 1 9.4 4.2 2.1 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Z1 PF10593.9 gi|330833944|ref|YP_004408672.1| - 0.14 11.6 2.4 0.17 11.4 2.4 1.2 1 0 0 1 1 1 0 Z1 domain ParE_toxin PF05016.15 gi|330833944|ref|YP_004408672.1| - 0.29 11.8 1.7 0.95 10.1 0.2 2.0 1 1 1 2 2 2 0 ParE toxin of type II toxin-antitoxin system, parDE DNA_primase_lrg PF04104.14 gi|330833944|ref|YP_004408672.1| - 0.4 10.1 3.2 0.45 9.9 3.2 1.1 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase, large subunit Prominin PF05478.11 gi|330833944|ref|YP_004408672.1| - 0.53 8.2 6.5 0.86 7.5 6.4 1.3 1 1 0 1 1 1 0 Prominin CFAP91 PF14738.6 gi|330833944|ref|YP_004408672.1| - 0.71 9.9 7.9 7.3 6.6 3.8 2.1 1 1 1 2 2 2 0 Cilia- and flagella-associated protein 91 dCache_2 PF08269.11 gi|330833944|ref|YP_004408672.1| - 0.85 8.7 9.9 0.14 11.3 6.5 1.4 2 0 0 2 2 2 0 Cache domain TMPIT PF07851.13 gi|330833944|ref|YP_004408672.1| - 3.2 6.9 6.5 3.7 6.7 6.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein vATP-synt_AC39 PF01992.16 gi|330833945|ref|YP_004408673.1| - 8.1e-16 58.4 2.4 1e-15 58.1 2.4 1.1 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Cas6b_C PF17262.2 gi|330833946|ref|YP_004408674.1| - 0.069 13.2 0.1 0.099 12.7 0.1 1.2 1 0 0 1 1 1 0 Cas6b C-terminal domain Aldo_ket_red PF00248.21 gi|330833947|ref|YP_004408675.1| - 4.6e-40 137.6 0.0 1.1e-39 136.4 0.0 1.6 1 1 0 1 1 1 1 Aldo/keto reductase family FliH PF02108.16 gi|330833947|ref|YP_004408675.1| - 0.024 14.7 0.1 0.44 10.6 0.0 2.4 2 0 0 2 2 2 0 Flagellar assembly protein FliH Ham1p_like PF01725.16 gi|330833948|ref|YP_004408676.1| - 2.1e-44 151.7 0.0 2.4e-44 151.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.22 gi|330833949|ref|YP_004408677.1| - 5.4e-09 35.9 0.0 8.1e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|330833949|ref|YP_004408677.1| - 9.8e-09 34.9 0.0 1.4e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Kdo PF06293.14 gi|330833949|ref|YP_004408677.1| - 6e-07 29.0 0.0 2.6e-06 27.0 0.0 1.9 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|330833949|ref|YP_004408677.1| - 1e-05 25.6 0.2 0.00015 21.8 0.3 2.2 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase_Tyr PF07714.17 gi|330833949|ref|YP_004408677.1| - 0.00055 19.3 0.0 0.0013 18.0 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase EcKinase PF02958.20 gi|330833949|ref|YP_004408677.1| - 0.00057 19.3 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase WaaY PF06176.11 gi|330833949|ref|YP_004408677.1| - 0.0011 18.7 0.0 0.0014 18.3 0.0 1.2 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) Choline_kinase PF01633.20 gi|330833949|ref|YP_004408677.1| - 0.012 15.3 0.1 0.12 12.0 0.1 2.0 1 1 1 2 2 2 0 Choline/ethanolamine kinase Peptidase_M22 PF00814.25 gi|330833950|ref|YP_004408678.1| - 1.3e-73 248.1 0.0 1.6e-73 247.8 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Ribosomal_S24e PF01282.19 gi|330833951|ref|YP_004408679.1| - 5.3e-19 67.9 0.0 7.2e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S24e Thi4 PF01946.17 gi|330833952|ref|YP_004408680.1| - 7.7e-80 267.5 0.6 9.4e-80 267.2 0.6 1.1 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|330833952|ref|YP_004408680.1| - 8.4e-15 55.2 6.1 1.6e-08 34.5 1.2 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330833952|ref|YP_004408680.1| - 4.9e-10 39.1 6.3 3.6e-06 26.3 0.8 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|330833952|ref|YP_004408680.1| - 7.1e-10 39.0 0.4 2.9e-09 37.0 0.5 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|330833952|ref|YP_004408680.1| - 3.7e-09 36.4 2.0 5e-09 36.0 2.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|330833952|ref|YP_004408680.1| - 3.2e-08 33.1 0.2 8.3e-08 31.8 0.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330833952|ref|YP_004408680.1| - 3e-06 26.7 0.3 3.8e-06 26.4 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|330833952|ref|YP_004408680.1| - 3.7e-06 27.4 1.6 8.4e-05 23.1 0.3 3.2 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330833952|ref|YP_004408680.1| - 2.1e-05 23.5 0.1 2.9e-05 23.0 0.1 1.3 1 1 0 1 1 1 1 HI0933-like protein GIDA PF01134.22 gi|330833952|ref|YP_004408680.1| - 5.3e-05 22.5 0.1 9.5e-05 21.6 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|330833952|ref|YP_004408680.1| - 5.8e-05 22.5 0.0 0.0001 21.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|330833952|ref|YP_004408680.1| - 0.00055 19.3 0.1 0.0012 18.2 0.0 1.6 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|330833952|ref|YP_004408680.1| - 0.0031 16.6 0.4 0.018 14.1 0.4 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|330833952|ref|YP_004408680.1| - 0.0073 15.5 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|330833952|ref|YP_004408680.1| - 0.009 16.0 1.0 0.021 14.8 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|330833952|ref|YP_004408680.1| - 0.064 12.1 1.7 0.5 9.2 0.5 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.19 gi|330833952|ref|YP_004408680.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase Flavoprotein PF02441.19 gi|330833953|ref|YP_004408681.1| - 1.7e-23 83.1 0.0 2.3e-23 82.7 0.0 1.1 1 0 0 1 1 1 1 Flavoprotein HTH_OrfB_IS605 PF12323.8 gi|330833953|ref|YP_004408681.1| - 0.14 11.6 0.0 0.37 10.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA_int_endo PF01974.17 gi|330833955|ref|YP_004408683.1| - 8.4e-26 89.9 0.0 1.3e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|330833955|ref|YP_004408683.1| - 3.4e-18 65.1 2.0 4.3e-18 64.7 0.1 2.1 3 0 0 3 3 3 1 tRNA intron endonuclease, N-terminal domain PhoU_div PF01865.16 gi|330833956|ref|YP_004408684.1| - 9.6e-06 25.1 12.8 0.00024 20.5 5.3 2.6 1 1 1 2 2 2 2 Protein of unknown function DUF47 Arg_decarb_HB PF17810.1 gi|330833956|ref|YP_004408684.1| - 0.012 15.9 1.8 0.071 13.4 0.7 2.3 2 1 0 2 2 2 0 Arginine decarboxylase helical bundle domain PhoU PF01895.19 gi|330833956|ref|YP_004408684.1| - 0.075 13.5 12.5 0.24 11.9 4.4 3.1 2 1 1 3 3 3 0 PhoU domain HNOBA PF07701.14 gi|330833956|ref|YP_004408684.1| - 0.59 9.5 4.6 1.7 8.0 1.2 2.1 2 0 0 2 2 2 0 Heme NO binding associated FH2 PF02181.23 gi|330833957|ref|YP_004408685.1| - 0.029 13.5 0.1 0.064 12.4 0.0 1.5 2 0 0 2 2 2 0 Formin Homology 2 Domain Herpes_V23 PF01802.17 gi|330833957|ref|YP_004408685.1| - 0.046 13.1 0.1 0.047 13.1 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus VP23 like capsid protein Peptidase_M3_N PF08439.10 gi|330833957|ref|YP_004408685.1| - 0.07 13.4 0.5 0.7 10.2 0.0 2.6 3 1 0 3 3 3 0 Oligopeptidase F MetOD2 PF18548.1 gi|330833957|ref|YP_004408685.1| - 4.9 7.3 6.2 5.7 7.1 0.7 2.4 2 1 0 2 2 2 0 Metanogen output domain 2 Molydop_binding PF01568.21 gi|330833958|ref|YP_004408686.1| - 0.013 15.5 0.0 0.22 11.6 0.0 2.0 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain AbrB-like PF14250.6 gi|330833958|ref|YP_004408686.1| - 0.05 13.7 0.1 0.071 13.2 0.1 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator HGTP_anticodon PF03129.20 gi|330833959|ref|YP_004408687.1| - 1e-23 83.3 0.1 2.5e-23 82.1 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|330833959|ref|YP_004408687.1| - 6.5e-08 32.8 0.2 3.5e-07 30.4 0.2 2.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Rap_GAP PF02145.15 gi|330833959|ref|YP_004408687.1| - 0.084 12.4 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 Rap/ran-GAP zinc_ribbon_4 PF13717.6 gi|330833959|ref|YP_004408687.1| - 0.76 9.8 2.1 8.9 6.3 0.2 2.8 2 0 0 2 2 2 0 zinc-ribbon domain Arginase PF00491.21 gi|330833960|ref|YP_004408688.1| - 1e-65 222.1 0.0 1.2e-65 221.9 0.0 1.0 1 0 0 1 1 1 1 Arginase family DUF2072 PF09845.9 gi|330833961|ref|YP_004408689.1| - 0.0033 17.7 0.2 0.0037 17.5 0.2 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn_Tnp_IS1595 PF12760.7 gi|330833961|ref|YP_004408689.1| - 0.0036 17.2 1.3 0.043 13.8 0.0 2.0 2 0 0 2 2 2 1 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|330833961|ref|YP_004408689.1| - 0.0037 16.9 5.1 0.016 14.9 5.3 1.9 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|330833961|ref|YP_004408689.1| - 0.0077 16.1 0.2 0.93 9.5 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-C2H2 PF00096.26 gi|330833961|ref|YP_004408689.1| - 0.0077 16.6 3.9 0.3 11.6 0.4 2.1 2 0 0 2 2 2 2 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|330833961|ref|YP_004408689.1| - 0.017 15.2 0.1 0.025 14.7 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|330833961|ref|YP_004408689.1| - 0.031 14.3 0.1 0.033 14.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-H2C2_2 PF13465.6 gi|330833961|ref|YP_004408689.1| - 0.15 12.5 1.4 3.9 8.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-ribbon_3 PF13248.6 gi|330833961|ref|YP_004408689.1| - 0.16 11.4 0.8 0.16 11.4 0.8 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|330833961|ref|YP_004408689.1| - 0.22 11.3 4.5 1.8 8.4 0.7 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330833961|ref|YP_004408689.1| - 0.24 11.1 0.5 0.24 11.1 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.15 gi|330833961|ref|YP_004408689.1| - 0.25 11.4 3.1 7.2 6.7 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger zf-AN1 PF01428.16 gi|330833961|ref|YP_004408689.1| - 0.46 10.7 3.1 2.6 8.3 0.1 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger zinc_ribbon_4 PF13717.6 gi|330833961|ref|YP_004408689.1| - 0.66 9.9 4.9 16 5.5 1.2 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|330833961|ref|YP_004408689.1| - 0.8 9.7 4.9 8.1 6.5 1.1 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type SUI1 PF01253.22 gi|330833962|ref|YP_004408690.1| - 3.3e-21 75.6 0.1 4.2e-21 75.3 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|330833962|ref|YP_004408690.1| - 0.003 17.8 0.3 0.0049 17.1 0.2 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) TFIIB PF00382.19 gi|330833963|ref|YP_004408691.1| - 2.9e-33 113.7 3.2 1.4e-16 60.3 0.2 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|330833963|ref|YP_004408691.1| - 5.4e-11 41.8 0.3 9.1e-11 41.1 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Sigma70_r4 PF04545.16 gi|330833963|ref|YP_004408691.1| - 6.8e-06 25.5 2.1 0.00014 21.3 0.4 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|330833963|ref|YP_004408691.1| - 2.1e-05 24.3 0.3 0.00043 20.1 0.2 2.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Cyclin_C PF02984.19 gi|330833963|ref|YP_004408691.1| - 0.00039 20.5 0.0 0.19 11.8 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain Sigma70_r4_2 PF08281.12 gi|330833963|ref|YP_004408691.1| - 0.0004 20.0 0.2 0.0058 16.3 0.1 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 DUF3562 PF12085.8 gi|330833963|ref|YP_004408691.1| - 0.00054 19.5 0.5 0.63 9.7 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3562) HTH_Tnp_ISL3 PF13542.6 gi|330833963|ref|YP_004408691.1| - 0.0012 18.2 0.4 0.058 12.8 0.1 3.1 3 1 1 4 4 4 1 Helix-turn-helix domain of transposase family ISL3 HTH_24 PF13412.6 gi|330833963|ref|YP_004408691.1| - 0.0065 16.0 0.1 0.025 14.2 0.1 2.0 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|330833963|ref|YP_004408691.1| - 0.0075 16.2 0.5 0.02 14.8 0.5 1.7 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|330833963|ref|YP_004408691.1| - 0.012 15.6 0.6 0.88 9.6 0.1 2.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HU-CCDC81_euk_2 PF18289.1 gi|330833963|ref|YP_004408691.1| - 0.037 14.2 0.2 3.6 7.8 0.0 2.4 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 HTH_23 PF13384.6 gi|330833963|ref|YP_004408691.1| - 0.081 12.8 0.1 0.081 12.8 0.1 3.3 3 0 0 3 3 3 0 Homeodomain-like domain Pigment_DH PF06324.11 gi|330833963|ref|YP_004408691.1| - 0.14 12.2 0.5 1 9.6 0.0 2.5 2 0 0 2 2 2 0 Pigment-dispersing hormone (PDH) DUF131 PF01998.17 gi|330833964|ref|YP_004408692.1| - 3e-09 36.4 12.5 3e-09 36.4 12.5 1.8 2 0 0 2 2 2 1 Protein of unknown function DUF131 PMP22_Claudin PF00822.20 gi|330833964|ref|YP_004408692.1| - 0.033 14.1 0.3 0.033 14.1 0.3 1.9 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin family Deltameth_res PF16020.5 gi|330833964|ref|YP_004408692.1| - 0.18 11.7 0.6 0.18 11.7 0.6 2.0 2 0 0 2 2 2 0 Deltamethrin resistance DUF2207 PF09972.9 gi|330833964|ref|YP_004408692.1| - 0.94 8.2 10.3 1.1 7.9 10.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF202 PF02656.15 gi|330833964|ref|YP_004408692.1| - 0.96 9.9 11.4 5.3 7.6 11.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) OAD_gamma PF04277.13 gi|330833964|ref|YP_004408692.1| - 3.9 8.1 13.5 1.7 9.3 1.9 2.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain DUF4227 PF14004.6 gi|330833964|ref|YP_004408692.1| - 4.7 7.3 6.9 0.68 9.9 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) Ferric_reduct PF01794.19 gi|330833964|ref|YP_004408692.1| - 4.8 7.3 8.5 0.44 10.7 2.3 1.9 1 1 1 2 2 2 0 Ferric reductase like transmembrane component FtsX PF02687.21 gi|330833964|ref|YP_004408692.1| - 8.2 7.0 15.7 20 5.7 15.7 1.7 1 1 0 1 1 1 0 FtsX-like permease family GTP_EFTU_D2 PF03144.25 gi|330833965|ref|YP_004408693.1| - 0.0035 17.7 0.8 0.021 15.2 0.2 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 2 ABC_tran PF00005.27 gi|330833966|ref|YP_004408694.1| - 3.8e-33 114.9 0.0 1.1e-32 113.4 0.0 1.8 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|330833966|ref|YP_004408694.1| - 1.3e-19 70.4 0.1 2.5e-19 69.6 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|330833966|ref|YP_004408694.1| - 1.4e-11 44.8 0.0 1.8e-07 31.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330833966|ref|YP_004408694.1| - 9.7e-08 31.7 1.0 3.2e-06 26.8 0.1 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|330833966|ref|YP_004408694.1| - 6.8e-07 29.6 0.3 8.8e-05 22.8 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|330833966|ref|YP_004408694.1| - 0.0014 17.3 3.3 0.16 10.6 0.0 3.2 3 1 0 3 3 3 1 AAA domain AAA PF00004.29 gi|330833966|ref|YP_004408694.1| - 0.002 18.5 0.3 0.039 14.4 0.3 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|330833966|ref|YP_004408694.1| - 0.0021 17.7 0.0 0.45 10.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|330833966|ref|YP_004408694.1| - 0.0029 18.2 0.1 0.047 14.3 0.1 2.5 1 1 0 2 2 2 1 AAA domain DUF87 PF01935.17 gi|330833966|ref|YP_004408694.1| - 0.0031 17.7 2.1 0.0041 17.2 0.2 2.2 2 1 0 2 2 2 1 Helicase HerA, central domain TniB PF05621.11 gi|330833966|ref|YP_004408694.1| - 0.0046 16.4 0.2 0.1 12.0 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein AAA_16 PF13191.6 gi|330833966|ref|YP_004408694.1| - 0.0047 17.3 0.1 0.013 15.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF3987 PF13148.6 gi|330833966|ref|YP_004408694.1| - 0.0094 15.0 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3987) MobB PF03205.14 gi|330833966|ref|YP_004408694.1| - 0.015 15.2 0.1 0.031 14.2 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Sigma54_activat PF00158.26 gi|330833966|ref|YP_004408694.1| - 0.023 14.4 0.0 4.8 6.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_5 PF07728.14 gi|330833966|ref|YP_004408694.1| - 0.025 14.6 0.8 2.1 8.3 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|330833966|ref|YP_004408694.1| - 0.027 14.2 0.1 0.053 13.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|330833966|ref|YP_004408694.1| - 0.047 12.9 0.1 0.077 12.1 0.1 1.7 1 1 0 1 1 1 0 G-protein alpha subunit PRK PF00485.18 gi|330833966|ref|YP_004408694.1| - 0.059 13.1 0.0 0.099 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.12 gi|330833966|ref|YP_004408694.1| - 0.069 13.1 0.2 0.64 9.9 0.1 2.1 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|330833966|ref|YP_004408694.1| - 0.077 12.2 0.1 0.42 9.7 0.1 2.1 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.6 gi|330833966|ref|YP_004408694.1| - 0.085 12.9 0.1 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|330833966|ref|YP_004408694.1| - 0.21 11.3 0.0 0.89 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|330833966|ref|YP_004408694.1| - 0.68 9.2 3.9 2 7.7 0.1 2.7 3 0 0 3 3 3 0 KaiC ABC_tran PF00005.27 gi|330833967|ref|YP_004408695.1| - 1.2e-22 80.9 0.0 7.1e-21 75.2 0.0 2.8 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|330833967|ref|YP_004408695.1| - 3.7e-19 69.0 0.1 7.2e-19 68.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|330833967|ref|YP_004408695.1| - 2.4e-10 40.8 3.6 3.1e-08 33.8 3.6 2.4 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330833967|ref|YP_004408695.1| - 7.1e-07 28.9 0.0 6.7e-05 22.4 0.0 2.4 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|330833967|ref|YP_004408695.1| - 0.0052 17.0 0.0 0.81 10.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|330833967|ref|YP_004408695.1| - 0.0099 15.6 0.2 0.02 14.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain APS_kinase PF01583.20 gi|330833967|ref|YP_004408695.1| - 0.012 15.5 0.1 0.021 14.7 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.29 gi|330833967|ref|YP_004408695.1| - 0.022 15.2 0.9 1.1 9.7 0.3 2.6 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|330833967|ref|YP_004408695.1| - 0.026 14.3 0.2 0.16 11.6 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|330833967|ref|YP_004408695.1| - 0.03 14.5 0.0 0.063 13.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|330833967|ref|YP_004408695.1| - 0.042 13.9 0.0 0.18 11.8 0.0 2.0 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit DUF2075 PF09848.9 gi|330833967|ref|YP_004408695.1| - 0.069 12.4 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DUF3038 PF11237.8 gi|330833967|ref|YP_004408695.1| - 0.073 13.1 0.5 0.16 12.0 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) DUF4342 PF14242.6 gi|330833967|ref|YP_004408695.1| - 0.1 12.6 3.1 13 5.8 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4342) AAA_13 PF13166.6 gi|330833967|ref|YP_004408695.1| - 0.96 8.0 7.7 0.12 11.0 0.2 2.3 3 0 0 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|330833968|ref|YP_004408696.1| - 8e-32 110.5 13.5 8e-32 110.5 13.5 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|330833968|ref|YP_004408696.1| - 0.0038 17.2 0.2 0.0038 17.2 0.2 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|330833968|ref|YP_004408696.1| - 4.2 6.8 7.8 2.1 7.8 3.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) BPD_transp_1 PF00528.22 gi|330833969|ref|YP_004408697.1| - 4.8e-36 124.2 15.1 4.8e-36 124.2 15.1 2.3 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF5326 PF17260.2 gi|330833969|ref|YP_004408697.1| - 0.01 16.0 0.3 0.01 16.0 0.3 4.0 6 0 0 6 6 6 0 Family of unknown function (DUF5326) SBP_bac_5 PF00496.22 gi|330833970|ref|YP_004408698.1| - 3.5e-52 177.6 11.2 3.5e-52 177.6 11.2 2.3 3 0 0 3 3 3 1 Bacterial extracellular solute-binding proteins, family 5 Middle PKD PF00801.20 gi|330833970|ref|YP_004408698.1| - 2.7e-09 36.7 7.5 3.3e-06 26.8 2.1 3.3 2 0 0 2 2 2 2 PKD domain SusF_SusE PF16411.5 gi|330833970|ref|YP_004408698.1| - 0.00054 20.5 0.0 0.0074 16.8 0.0 2.7 3 2 0 3 3 3 1 Outer membrane protein SusF_SusE DUF4468 PF14730.6 gi|330833970|ref|YP_004408698.1| - 0.24 11.7 4.1 0.61 10.4 0.8 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4468) with TBP-like fold E1-E2_ATPase PF00122.20 gi|330833970|ref|YP_004408698.1| - 1.4 8.4 5.1 0.75 9.3 2.3 1.8 2 0 0 2 2 2 0 E1-E2 ATPase HTH_10 PF04967.12 gi|330833971|ref|YP_004408699.1| - 2.1e-19 69.1 0.1 3.7e-19 68.3 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|330833971|ref|YP_004408699.1| - 0.00013 21.4 0.0 0.00027 20.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|330833971|ref|YP_004408699.1| - 0.0013 18.9 0.2 0.0052 16.9 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|330833971|ref|YP_004408699.1| - 0.002 17.7 0.1 0.0044 16.6 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|330833971|ref|YP_004408699.1| - 0.0022 17.8 0.0 0.0057 16.5 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_3 PF01381.22 gi|330833971|ref|YP_004408699.1| - 0.0033 17.5 0.0 0.0068 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix MarR PF01047.22 gi|330833971|ref|YP_004408699.1| - 0.0068 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 MarR family Pox_polyA_pol_N PF12630.7 gi|330833971|ref|YP_004408699.1| - 0.055 13.8 0.3 0.13 12.7 0.3 1.6 1 0 0 1 1 1 0 Poxvirus poly(A) polymerase N-terminal domain IF2_N PF04760.15 gi|330833971|ref|YP_004408699.1| - 0.068 13.0 0.0 0.22 11.4 0.0 2.0 1 0 0 1 1 1 0 Translation initiation factor IF-2, N-terminal region HHH_8 PF14716.6 gi|330833971|ref|YP_004408699.1| - 0.084 13.2 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain HTH_11 PF08279.12 gi|330833971|ref|YP_004408699.1| - 0.088 12.8 0.3 0.26 11.2 0.1 2.1 2 0 0 2 2 2 0 HTH domain DUF692 PF05114.13 gi|330833971|ref|YP_004408699.1| - 0.1 11.8 0.1 0.15 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF692) HTH_Crp_2 PF13545.6 gi|330833971|ref|YP_004408699.1| - 0.13 12.2 0.0 0.57 10.2 0.0 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330833971|ref|YP_004408699.1| - 0.2 11.2 1.1 0.51 9.9 0.9 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 LacI PF00356.21 gi|330833971|ref|YP_004408699.1| - 0.23 11.3 2.5 0.83 9.5 0.1 2.6 3 0 0 3 3 3 0 Bacterial regulatory proteins, lacI family Aminotran_1_2 PF00155.21 gi|330833972|ref|YP_004408700.1| - 2.1e-14 53.5 0.0 1.2e-11 44.5 0.0 2.9 1 1 1 2 2 2 2 Aminotransferase class I and II tRNA-synt_2c PF01411.19 gi|330833973|ref|YP_004408701.1| - 4e-13 48.7 0.2 5.6e-13 48.3 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|330833973|ref|YP_004408701.1| - 1.8e-11 44.0 0.8 3.2e-11 43.1 0.1 1.9 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain Pantoate_ligase PF02569.15 gi|330833973|ref|YP_004408701.1| - 0.1 11.8 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Pantoate-beta-alanine ligase Snf7 PF03357.21 gi|330833974|ref|YP_004408702.1| - 0.00095 18.8 0.5 0.0016 18.1 0.5 1.3 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.9 gi|330833974|ref|YP_004408702.1| - 0.0019 18.2 0.6 0.0031 17.5 0.6 1.4 1 0 0 1 1 1 1 Tumour suppressor protein tRNA-synt_1b PF00579.25 gi|330833975|ref|YP_004408703.1| - 3.6e-23 82.3 0.0 5.7e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF5050 PF16472.5 gi|330833975|ref|YP_004408703.1| - 0.046 13.0 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5050) HTH_38 PF13936.6 gi|330833976|ref|YP_004408704.1| - 3.4e-16 58.7 2.1 1.4e-06 28.0 0.0 3.5 3 1 1 4 4 3 3 Helix-turn-helix domain HTH_7 PF02796.15 gi|330833976|ref|YP_004408704.1| - 7.6e-16 57.9 7.9 1.2e-06 28.5 0.6 3.1 2 1 1 3 3 3 3 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|330833976|ref|YP_004408704.1| - 2.7e-14 52.5 0.4 0.00067 19.4 0.1 3.1 3 0 0 3 3 3 3 Homeodomain-like domain Terminase_5 PF06056.12 gi|330833976|ref|YP_004408704.1| - 6.6e-09 35.5 0.2 0.0063 16.4 0.1 3.1 3 0 0 3 3 3 2 Putative ATPase subunit of terminase (gpP-like) TnsD PF15978.5 gi|330833976|ref|YP_004408704.1| - 7.4e-08 31.8 5.9 0.056 12.4 0.1 3.0 1 1 2 3 3 3 3 Tn7-like transposition protein D HTH_40 PF14493.6 gi|330833976|ref|YP_004408704.1| - 1.1e-07 32.2 0.8 0.14 12.6 0.0 3.2 2 1 1 3 3 3 2 Helix-turn-helix domain HTH_24 PF13412.6 gi|330833976|ref|YP_004408704.1| - 4e-07 29.5 0.2 0.17 11.5 0.0 3.3 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding GcrA PF07750.11 gi|330833976|ref|YP_004408704.1| - 5.5e-07 30.1 0.1 0.003 18.0 0.0 2.5 2 1 1 3 3 3 2 GcrA cell cycle regulator HTH_Tnp_IS630 PF01710.16 gi|330833976|ref|YP_004408704.1| - 1.4e-06 28.3 2.1 1.4e-06 28.3 2.1 1.8 2 0 0 2 2 2 1 Transposase ANT PF03374.14 gi|330833976|ref|YP_004408704.1| - 2.3e-06 27.9 0.7 0.014 15.7 0.0 3.1 1 1 1 3 3 3 1 Phage antirepressor protein KilAC domain Sigma70_r4_2 PF08281.12 gi|330833976|ref|YP_004408704.1| - 3.3e-06 26.7 0.4 0.41 10.4 0.0 3.3 3 0 0 3 3 3 1 Sigma-70, region 4 GerE PF00196.19 gi|330833976|ref|YP_004408704.1| - 4.9e-06 26.0 1.4 0.079 12.5 0.1 3.2 3 0 0 3 3 3 1 Bacterial regulatory proteins, luxR family Recombinase PF07508.13 gi|330833976|ref|YP_004408704.1| - 8.7e-06 26.1 2.2 0.022 15.1 0.3 2.7 1 1 1 2 2 2 2 Recombinase HTH_Tnp_1 PF01527.20 gi|330833976|ref|YP_004408704.1| - 5.5e-05 23.4 0.0 0.21 11.9 0.0 2.5 2 0 0 2 2 2 2 Transposase HTH_Tnp_IS1 PF12759.7 gi|330833976|ref|YP_004408704.1| - 8.5e-05 22.1 0.0 0.33 10.6 0.0 2.7 3 1 0 3 3 3 2 InsA C-terminal domain HTH_5 PF01022.20 gi|330833976|ref|YP_004408704.1| - 9.4e-05 22.2 0.1 4.2 7.3 0.0 3.5 3 1 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|330833976|ref|YP_004408704.1| - 0.00013 22.0 0.0 0.64 10.2 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|330833976|ref|YP_004408704.1| - 0.00023 21.0 1.5 0.1 12.5 0.1 3.3 3 0 0 3 3 3 1 HTH domain CENP-B_N PF04218.13 gi|330833976|ref|YP_004408704.1| - 0.00028 20.5 5.9 0.076 12.7 0.1 3.1 2 1 1 3 3 3 1 CENP-B N-terminal DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|330833976|ref|YP_004408704.1| - 0.00044 19.6 0.0 0.23 10.9 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|330833976|ref|YP_004408704.1| - 0.00057 19.6 1.7 0.36 10.7 0.1 3.3 3 1 0 3 3 3 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|330833976|ref|YP_004408704.1| - 0.00073 19.0 0.2 0.36 10.4 0.1 2.9 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_29 PF13551.6 gi|330833976|ref|YP_004408704.1| - 0.0012 18.8 0.0 0.072 13.1 0.0 2.9 3 0 0 3 3 3 1 Winged helix-turn helix FumaraseC_C PF10415.9 gi|330833976|ref|YP_004408704.1| - 0.0013 19.1 0.4 0.35 11.3 0.1 3.0 2 1 1 3 3 3 1 Fumarase C C-terminus PAX PF00292.18 gi|330833976|ref|YP_004408704.1| - 0.0018 18.2 0.0 0.15 12.0 0.0 2.4 1 1 2 3 3 3 1 'Paired box' domain IF2_N PF04760.15 gi|330833976|ref|YP_004408704.1| - 0.0019 18.0 8.7 1.3 8.9 0.1 4.4 2 1 2 4 4 4 1 Translation initiation factor IF-2, N-terminal region WYL_3 PF18488.1 gi|330833976|ref|YP_004408704.1| - 0.0029 17.9 0.6 0.37 11.2 0.2 2.5 2 0 0 2 2 2 1 WYL domain HTH_6 PF01418.17 gi|330833976|ref|YP_004408704.1| - 0.0032 17.4 0.2 1.7 8.7 0.0 2.9 2 1 1 3 3 3 1 Helix-turn-helix domain, rpiR family Sigma70_ECF PF07638.11 gi|330833976|ref|YP_004408704.1| - 0.0039 17.1 0.0 1.6 8.6 0.0 2.8 1 1 1 3 3 3 1 ECF sigma factor DUF3791 PF12668.7 gi|330833976|ref|YP_004408704.1| - 0.0053 16.8 2.0 14 5.8 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) HTH_36 PF13730.6 gi|330833976|ref|YP_004408704.1| - 0.0068 16.3 7.3 3.4 7.7 0.2 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain Phage_terminase PF10668.9 gi|330833976|ref|YP_004408704.1| - 0.0068 16.4 1.7 1.7 8.7 0.1 3.0 3 0 0 3 3 3 1 Phage terminase small subunit HTH_35 PF13693.6 gi|330833976|ref|YP_004408704.1| - 0.0083 16.1 0.2 5.5 7.1 0.1 3.0 2 1 1 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_50 PF18024.1 gi|330833976|ref|YP_004408704.1| - 0.0089 15.6 2.5 3.2 7.4 0.1 2.8 3 0 0 3 3 3 2 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|330833976|ref|YP_004408704.1| - 0.011 15.6 4.5 1.8 8.5 0.4 3.0 1 1 2 3 3 3 0 Phage antitermination protein Q MRP-L20 PF12824.7 gi|330833976|ref|YP_004408704.1| - 0.013 15.7 0.2 0.017 15.3 0.2 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 MarR PF01047.22 gi|330833976|ref|YP_004408704.1| - 0.014 15.3 0.0 15 5.6 0.0 3.2 3 0 0 3 3 3 0 MarR family UPF0175 PF03683.13 gi|330833976|ref|YP_004408704.1| - 0.015 15.0 0.1 5.9 6.7 0.0 2.6 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0175) DUF2802 PF10975.8 gi|330833976|ref|YP_004408704.1| - 0.017 15.2 0.0 4.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) RPA_C PF08784.11 gi|330833976|ref|YP_004408704.1| - 0.018 15.7 0.2 19 6.0 0.0 3.0 2 1 1 3 3 3 0 Replication protein A C terminal HTH_30 PF13556.6 gi|330833976|ref|YP_004408704.1| - 0.026 14.3 0.0 6.2 6.7 0.0 3.0 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_3 PF01381.22 gi|330833976|ref|YP_004408704.1| - 0.033 14.3 3.9 20 5.3 0.4 4.2 3 1 1 4 4 4 0 Helix-turn-helix HTH_IclR PF09339.10 gi|330833976|ref|YP_004408704.1| - 0.053 13.3 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|330833976|ref|YP_004408704.1| - 0.073 13.0 0.0 3.8 7.5 0.0 2.7 3 0 0 3 3 3 0 MarR family MerR_1 PF13411.6 gi|330833976|ref|YP_004408704.1| - 0.078 13.1 3.9 2 8.6 0.5 3.6 2 1 2 4 4 4 0 MerR HTH family regulatory protein Sigma70_r3 PF04539.16 gi|330833976|ref|YP_004408704.1| - 0.11 12.6 0.7 16 5.7 0.0 3.5 3 1 1 4 4 3 0 Sigma-70 region 3 HTH_25 PF13413.6 gi|330833976|ref|YP_004408704.1| - 0.11 12.4 0.5 30 4.6 0.0 3.3 4 0 0 4 4 3 0 Helix-turn-helix domain DUF2089 PF09862.9 gi|330833976|ref|YP_004408704.1| - 0.11 12.5 1.4 9.7 6.3 0.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2089) Mga PF05043.13 gi|330833976|ref|YP_004408704.1| - 0.13 12.9 3.4 2.3 8.8 0.0 2.9 2 1 1 3 3 3 0 Mga helix-turn-helix domain DUF1910 PF08928.10 gi|330833976|ref|YP_004408704.1| - 0.14 12.1 5.1 0.42 10.6 3.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF1910) KxDL PF10241.9 gi|330833976|ref|YP_004408704.1| - 0.16 12.3 2.8 0.11 12.8 0.5 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein NUMOD1 PF07453.13 gi|330833976|ref|YP_004408704.1| - 0.57 10.5 8.1 10 6.5 0.3 3.3 3 0 0 3 3 3 0 NUMOD1 domain LysE PF01810.18 gi|330833978|ref|YP_004408706.1| - 0.00011 21.8 8.4 0.00018 21.1 8.4 1.3 1 0 0 1 1 1 1 LysE type translocator DPM3 PF08285.11 gi|330833978|ref|YP_004408706.1| - 0.027 14.7 2.4 0.032 14.4 0.8 1.8 1 1 1 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) Oxidored_q4 PF00507.19 gi|330833978|ref|YP_004408706.1| - 1.5 9.0 7.8 1.5 9.0 2.5 2.4 2 1 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TrmB PF01978.19 gi|330833979|ref|YP_004408707.1| - 3.8e-12 45.9 0.0 6e-12 45.3 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|330833979|ref|YP_004408707.1| - 5.2e-07 29.5 0.0 9.8e-07 28.6 0.0 1.6 2 0 0 2 2 1 1 MarR family MarR PF01047.22 gi|330833979|ref|YP_004408707.1| - 1.6e-06 27.9 0.0 3.1e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|330833979|ref|YP_004408707.1| - 7.8e-06 25.7 0.0 9.5e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit Fe_dep_repress PF01325.19 gi|330833979|ref|YP_004408707.1| - 0.0016 18.6 0.0 0.0043 17.2 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|330833979|ref|YP_004408707.1| - 0.0034 17.7 0.0 0.0056 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|330833979|ref|YP_004408707.1| - 0.0064 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|330833979|ref|YP_004408707.1| - 0.0074 15.8 0.1 0.015 14.9 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|330833979|ref|YP_004408707.1| - 0.0078 16.1 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|330833979|ref|YP_004408707.1| - 0.0095 15.8 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FtsK_gamma PF09397.10 gi|330833979|ref|YP_004408707.1| - 0.015 15.1 0.3 0.054 13.3 0.1 1.9 1 1 1 2 2 2 0 Ftsk gamma domain PadR PF03551.14 gi|330833979|ref|YP_004408707.1| - 0.017 15.1 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|330833979|ref|YP_004408707.1| - 0.025 14.1 0.2 0.037 13.6 0.2 1.3 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_micro PF17007.5 gi|330833979|ref|YP_004408707.1| - 0.04 12.8 0.1 0.049 12.5 0.1 1.0 1 0 0 1 1 1 0 HTH-like HTH_27 PF13463.6 gi|330833979|ref|YP_004408707.1| - 0.041 14.4 0.2 0.097 13.2 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|330833979|ref|YP_004408707.1| - 0.058 13.4 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Cdc6_C PF09079.11 gi|330833979|ref|YP_004408707.1| - 0.059 13.3 0.2 0.18 11.8 0.0 1.9 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DUF4423 PF14394.6 gi|330833979|ref|YP_004408707.1| - 0.067 12.9 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) SIR2_2 PF13289.6 gi|330833979|ref|YP_004408707.1| - 0.068 13.3 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 SIR2-like domain RPA_C PF08784.11 gi|330833979|ref|YP_004408707.1| - 0.084 13.5 0.0 0.16 12.6 0.0 1.4 1 1 0 1 1 1 0 Replication protein A C terminal HTH_23 PF13384.6 gi|330833979|ref|YP_004408707.1| - 0.096 12.5 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF2250 PF10007.9 gi|330833979|ref|YP_004408707.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) EFG_IV PF03764.18 gi|330833980|ref|YP_004408708.1| - 0.031 14.1 0.0 0.051 13.4 0.0 1.4 1 0 0 1 1 1 0 Elongation factor G, domain IV ParA PF10609.9 gi|330833981|ref|YP_004408709.1| - 1.6e-97 325.8 0.0 1.8e-97 325.6 0.0 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|330833981|ref|YP_004408709.1| - 9.6e-14 51.5 0.0 3.7e-13 49.7 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330833981|ref|YP_004408709.1| - 2e-09 37.6 0.4 2.4e-06 27.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|330833981|ref|YP_004408709.1| - 1.2e-08 34.8 0.2 5.7e-05 22.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|330833981|ref|YP_004408709.1| - 4.9e-06 26.0 0.0 8.9e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|330833981|ref|YP_004408709.1| - 1.1e-05 24.8 5.2 3.9e-05 23.0 0.9 2.4 2 1 1 3 3 3 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|330833981|ref|YP_004408709.1| - 0.00061 19.4 0.0 0.00098 18.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|330833981|ref|YP_004408709.1| - 0.0011 18.0 0.2 0.0019 17.3 0.2 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB DUF4898 PF16239.5 gi|330833981|ref|YP_004408709.1| - 0.014 15.3 0.1 0.028 14.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4898) CBP_BcsQ PF06564.12 gi|330833981|ref|YP_004408709.1| - 0.036 13.6 0.1 0.19 11.2 0.1 1.9 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|330833981|ref|YP_004408709.1| - 0.081 12.7 1.6 5 6.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|330833981|ref|YP_004408709.1| - 0.095 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|330833982|ref|YP_004408710.1| - 9.3e-18 65.0 0.1 1.5e-17 64.3 0.1 1.4 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.12 gi|330833982|ref|YP_004408710.1| - 0.00017 21.3 0.0 0.0003 20.6 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain dNK PF01712.19 gi|330833982|ref|YP_004408710.1| - 0.00085 19.2 5.0 0.064 13.1 0.9 2.1 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_17 PF13207.6 gi|330833982|ref|YP_004408710.1| - 0.0011 19.4 0.1 0.017 15.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain Rad17 PF03215.15 gi|330833982|ref|YP_004408710.1| - 0.0019 18.1 0.0 0.0027 17.6 0.0 1.4 1 1 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|330833982|ref|YP_004408710.1| - 0.0036 17.7 0.1 0.012 16.1 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin PF02224.18 gi|330833982|ref|YP_004408710.1| - 0.0039 16.9 0.1 1.8 8.2 0.0 2.3 2 0 0 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|330833982|ref|YP_004408710.1| - 0.0053 17.0 0.0 0.014 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330833982|ref|YP_004408710.1| - 0.0072 16.5 0.0 0.024 14.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|330833982|ref|YP_004408710.1| - 0.014 14.7 0.1 0.13 11.6 0.0 2.2 1 1 1 2 2 2 0 Zeta toxin KTI12 PF08433.10 gi|330833982|ref|YP_004408710.1| - 0.021 14.3 0.1 0.036 13.5 0.1 1.4 1 1 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.6 gi|330833982|ref|YP_004408710.1| - 0.023 15.1 0.0 0.039 14.3 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|330833982|ref|YP_004408710.1| - 0.026 14.8 0.1 0.039 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|330833982|ref|YP_004408710.1| - 0.03 14.6 0.4 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain RNA_helicase PF00910.22 gi|330833982|ref|YP_004408710.1| - 0.031 14.7 0.0 0.15 12.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase SKI PF01202.22 gi|330833982|ref|YP_004408710.1| - 0.042 14.0 0.3 0.14 12.2 0.3 1.9 1 1 0 1 1 1 0 Shikimate kinase NTPase_1 PF03266.15 gi|330833982|ref|YP_004408710.1| - 0.069 13.1 0.3 0.34 10.8 0.0 2.1 1 1 0 2 2 2 0 NTPase DUF2075 PF09848.9 gi|330833982|ref|YP_004408710.1| - 0.073 12.3 0.3 0.13 11.5 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ParA PF10609.9 gi|330833982|ref|YP_004408710.1| - 0.095 12.1 0.2 0.2 11.1 0.1 1.6 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330833982|ref|YP_004408710.1| - 0.13 11.5 1.5 0.43 9.7 0.3 2.2 1 1 0 2 2 2 0 Anion-transporting ATPase AAA_5 PF07728.14 gi|330833982|ref|YP_004408710.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|330833982|ref|YP_004408710.1| - 0.15 11.4 2.3 1.9 7.8 0.3 2.3 2 1 1 3 3 3 0 KaiC AAA_3 PF07726.11 gi|330833982|ref|YP_004408710.1| - 0.16 11.8 0.0 0.38 10.6 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) CbiA PF01656.23 gi|330833982|ref|YP_004408710.1| - 0.18 11.9 0.7 0.35 10.9 0.7 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|330833982|ref|YP_004408710.1| - 0.28 11.0 1.6 0.48 10.2 0.8 1.9 1 1 0 1 1 1 0 AAA domain Rhomboid PF01694.22 gi|330833984|ref|YP_004408712.1| - 1e-15 58.0 11.4 1e-15 58.0 11.4 2.1 2 0 0 2 2 2 1 Rhomboid family DUF2512 PF10710.9 gi|330833984|ref|YP_004408712.1| - 1.3 8.6 16.4 0.13 12.0 11.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2512) Peptidase_M50 PF02163.22 gi|330833985|ref|YP_004408713.1| - 2e-07 30.6 9.7 0.00044 19.6 1.4 2.4 1 1 1 2 2 2 2 Peptidase family M50 MMPL PF03176.15 gi|330833988|ref|YP_004408716.1| - 1.1e-58 198.8 13.1 6.4e-30 104.2 7.3 2.1 2 0 0 2 2 2 2 MMPL family ThiP_synth PF10120.9 gi|330833989|ref|YP_004408717.1| - 8.5e-43 145.8 0.0 1.1e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|330833989|ref|YP_004408717.1| - 0.0038 17.1 0.2 0.01 15.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|330833989|ref|YP_004408717.1| - 0.0041 17.1 0.1 0.015 15.3 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix YdaS_antitoxin PF15943.5 gi|330833989|ref|YP_004408717.1| - 0.012 15.4 0.1 2.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_7 PF02796.15 gi|330833989|ref|YP_004408717.1| - 0.014 15.4 0.1 0.035 14.2 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_31 PF13560.6 gi|330833989|ref|YP_004408717.1| - 0.059 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|330833989|ref|YP_004408717.1| - 0.067 13.0 0.0 0.22 11.3 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|330833989|ref|YP_004408717.1| - 0.086 12.7 0.1 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 Homeodomain-like domain NurA PF09376.10 gi|330833990|ref|YP_004408718.1| - 2.5e-05 24.1 0.5 0.0015 18.3 0.1 2.1 1 1 0 2 2 2 2 NurA domain DUF87 PF01935.17 gi|330833991|ref|YP_004408719.1| - 1.9e-21 77.2 4.0 3.8e-21 76.2 2.6 1.9 1 1 1 2 2 2 1 Helicase HerA, central domain T4SS-DNA_transf PF02534.14 gi|330833991|ref|YP_004408719.1| - 0.011 14.6 0.1 0.027 13.3 0.0 1.6 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer FtsK_SpoIIIE PF01580.18 gi|330833991|ref|YP_004408719.1| - 0.03 13.7 0.2 6.5 6.0 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family PCMT PF01135.19 gi|330833992|ref|YP_004408720.1| - 2.6e-34 118.8 0.0 3.2e-34 118.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|330833992|ref|YP_004408720.1| - 3.1e-07 29.7 0.0 3.9e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|330833992|ref|YP_004408720.1| - 1.9e-06 28.5 0.0 3.1e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330833992|ref|YP_004408720.1| - 0.00051 19.9 0.0 0.00068 19.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330833992|ref|YP_004408720.1| - 0.00068 19.1 0.0 0.00088 18.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|330833992|ref|YP_004408720.1| - 0.00098 19.0 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330833992|ref|YP_004408720.1| - 0.0073 16.9 0.0 0.012 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330833992|ref|YP_004408720.1| - 0.031 13.8 0.0 0.045 13.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.20 gi|330833992|ref|YP_004408720.1| - 0.038 13.3 0.1 0.06 12.6 0.1 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_24 PF13578.6 gi|330833992|ref|YP_004408720.1| - 0.069 14.2 0.0 0.1 13.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330833992|ref|YP_004408720.1| - 0.07 13.9 0.0 0.12 13.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|330833992|ref|YP_004408720.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein tRNA-synt_2 PF00152.20 gi|330833993|ref|YP_004408721.1| - 2.3e-82 276.6 0.0 2.9e-82 276.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|330833993|ref|YP_004408721.1| - 5.8e-12 45.4 0.1 1.2e-11 44.4 0.1 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|330833993|ref|YP_004408721.1| - 8.2e-08 32.0 0.2 7.7e-05 22.3 0.1 2.9 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) Peptidase_M50 PF02163.22 gi|330833994|ref|YP_004408722.1| - 1.8e-19 70.0 6.1 3.4e-19 69.1 6.1 1.5 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|330833994|ref|YP_004408722.1| - 5.7e-09 35.7 0.0 1e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|330833994|ref|YP_004408722.1| - 2.1e-07 31.2 0.0 4.9e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|330833994|ref|YP_004408722.1| - 3.9e-05 23.9 0.0 6.9e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 PDZ domain Tricorn_PDZ PF14685.6 gi|330833994|ref|YP_004408722.1| - 0.18 11.8 0.0 0.4 10.7 0.0 1.5 1 0 0 1 1 1 0 Tricorn protease PDZ domain NTP_transf_2 PF01909.23 gi|330833995|ref|YP_004408723.1| - 2.4e-06 27.8 0.2 6.6e-06 26.3 0.2 1.9 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|330833995|ref|YP_004408723.1| - 7.3e-05 22.8 0.0 0.00015 21.7 0.0 1.7 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF2857 PF11198.8 gi|330833995|ref|YP_004408723.1| - 0.15 11.8 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) DUF1122 PF06557.11 gi|330833996|ref|YP_004408724.1| - 2.3e-23 82.5 0.0 2.5e-23 82.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Radical_SAM PF04055.21 gi|330833997|ref|YP_004408725.1| - 1.3e-08 35.4 0.1 2.2e-06 28.2 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|330833997|ref|YP_004408725.1| - 6.2e-08 32.8 0.0 1.7e-07 31.4 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|330833997|ref|YP_004408725.1| - 0.0001 22.6 0.0 0.0003 21.1 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain eRF1_1 PF03463.15 gi|330833998|ref|YP_004408726.1| - 3.6e-21 75.5 0.8 8.1e-21 74.4 0.8 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|330833998|ref|YP_004408726.1| - 2.5e-20 73.0 1.0 5.7e-20 71.9 0.1 2.1 2 1 0 2 2 2 1 eRF1 domain 3 baeRF_family2 PF18844.1 gi|330833998|ref|YP_004408726.1| - 1.3e-06 28.6 0.0 2.7e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 2 eRF1_2 PF03464.15 gi|330833998|ref|YP_004408726.1| - 0.0029 17.9 0.1 0.0078 16.5 0.1 1.8 1 0 0 1 1 1 1 eRF1 domain 2 7TMR-HDED PF07697.11 gi|330833998|ref|YP_004408726.1| - 0.011 15.8 1.3 0.019 15.1 1.3 1.3 1 0 0 1 1 1 0 7TM-HD extracellular HGD-D PF06050.13 gi|330833998|ref|YP_004408726.1| - 0.03 14.1 0.1 0.079 12.7 0.1 1.3 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Acetyltransf_1 PF00583.25 gi|330833999|ref|YP_004408727.1| - 4e-18 65.7 0.0 5.8e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330833999|ref|YP_004408727.1| - 4.1e-11 42.9 0.0 4.7e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330833999|ref|YP_004408727.1| - 6.4e-10 39.3 0.2 9.2e-10 38.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330833999|ref|YP_004408727.1| - 3e-08 33.9 0.0 3.8e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330833999|ref|YP_004408727.1| - 4.1e-05 23.5 0.1 5.5e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|330833999|ref|YP_004408727.1| - 0.003 17.6 0.0 0.025 14.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|330833999|ref|YP_004408727.1| - 0.022 14.9 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|330833999|ref|YP_004408727.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DNA_pol_B PF00136.21 gi|330834000|ref|YP_004408728.1| - 1.2e-71 241.8 0.1 1.9e-71 241.1 0.1 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|330834000|ref|YP_004408728.1| - 2.5e-43 148.5 6.7 5e-42 144.2 4.4 2.9 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|330834000|ref|YP_004408728.1| - 1.7e-10 41.1 0.4 4.5e-10 39.8 0.4 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_2 PF03175.13 gi|330834000|ref|YP_004408728.1| - 0.00085 18.3 0.0 0.0021 17.0 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral TetR_C_24 PF17932.1 gi|330834000|ref|YP_004408728.1| - 0.16 12.3 0.2 0.32 11.3 0.2 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain T2SSF PF00482.23 gi|330834000|ref|YP_004408728.1| - 0.21 11.6 0.0 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Toprim_4 PF13662.6 gi|330834001|ref|YP_004408729.1| - 4.3e-11 43.1 0.2 1.2e-10 41.7 0.2 1.7 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|330834001|ref|YP_004408729.1| - 9.1e-05 22.8 0.0 0.00029 21.2 0.0 1.9 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|330834001|ref|YP_004408729.1| - 0.00047 20.4 2.4 0.0099 16.1 0.1 2.8 3 0 0 3 3 3 1 Toprim domain tRNA-synt_1b PF00579.25 gi|330834002|ref|YP_004408730.1| - 3.5e-49 167.7 0.6 8.4e-36 123.8 0.1 2.1 1 1 1 2 2 2 2 tRNA synthetases class I (W and Y) UPF0047 PF01894.17 gi|330834004|ref|YP_004408732.1| - 1.7e-38 131.3 0.1 2e-38 131.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 CBF_beta PF02312.17 gi|330834004|ref|YP_004408732.1| - 0.099 12.3 0.0 0.099 12.3 0.0 1.3 1 1 0 1 1 1 0 Core binding factor beta subunit AIRS_C PF02769.22 gi|330834005|ref|YP_004408733.1| - 7.8e-11 42.3 0.1 1.4e-10 41.6 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330834005|ref|YP_004408733.1| - 7.1e-08 33.0 0.0 1.4e-07 32.0 0.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Type2_restr_D3 PF16902.5 gi|330834005|ref|YP_004408733.1| - 0.059 13.3 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain Ribosomal_S13 PF00416.22 gi|330834006|ref|YP_004408734.1| - 2.6e-47 160.4 0.7 3.2e-47 160.1 0.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.6 gi|330834006|ref|YP_004408734.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-hairpin-helix containing domain S4 PF01479.25 gi|330834007|ref|YP_004408735.1| - 2.9e-17 62.1 0.3 5.5e-17 61.2 0.3 1.4 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|330834007|ref|YP_004408735.1| - 0.00092 20.1 0.7 0.0021 18.9 0.4 1.9 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain TyrRSs_C PF16714.5 gi|330834007|ref|YP_004408735.1| - 0.037 13.8 0.0 0.13 12.1 0.0 1.7 2 0 0 2 2 2 0 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S11 PF00411.19 gi|330834008|ref|YP_004408736.1| - 1.1e-47 161.0 1.9 1.5e-47 160.6 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.26 gi|330834009|ref|YP_004408737.1| - 7e-30 103.7 0.0 1.4e-29 102.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|330834009|ref|YP_004408737.1| - 2.5e-10 39.6 0.0 4e-10 39.0 0.0 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|330834009|ref|YP_004408737.1| - 1.1e-06 28.6 8.8 3.9e-05 23.7 4.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834009|ref|YP_004408737.1| - 0.003 17.6 12.0 0.0062 16.6 1.8 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330834009|ref|YP_004408737.1| - 0.011 16.2 11.2 0.7 10.5 7.8 2.9 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330834009|ref|YP_004408737.1| - 0.035 13.9 3.1 0.035 13.9 3.1 3.7 3 1 0 3 3 3 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330834009|ref|YP_004408737.1| - 0.099 13.2 0.9 0.099 13.2 0.9 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|330834009|ref|YP_004408737.1| - 0.11 12.6 7.2 0.12 12.6 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330834009|ref|YP_004408737.1| - 0.33 11.1 14.1 0.53 10.5 5.6 2.5 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330834009|ref|YP_004408737.1| - 0.6 11.1 13.7 1.6 9.7 2.3 3.3 2 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_15 PF13459.6 gi|330834009|ref|YP_004408737.1| - 0.77 10.5 6.9 2.4 8.9 0.1 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|330834009|ref|YP_004408737.1| - 1 9.5 9.9 3.8 7.7 4.8 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330834009|ref|YP_004408737.1| - 3.1 8.4 13.5 3.3 8.3 2.3 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834009|ref|YP_004408737.1| - 6.8 6.9 18.0 0.15 12.2 1.9 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Ribosomal_L27A PF00828.19 gi|330834010|ref|YP_004408738.1| - 6.8e-07 30.0 0.8 1.8e-06 28.6 0.8 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|330834010|ref|YP_004408738.1| - 6.3e-05 22.4 0.1 6.6e-05 22.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L13 PF00572.18 gi|330834011|ref|YP_004408739.1| - 7.6e-10 39.1 0.3 1e-07 32.2 0.2 2.5 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|330834012|ref|YP_004408740.1| - 1.4e-28 99.8 0.2 1.6e-28 99.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.17 gi|330834013|ref|YP_004408741.1| - 2.1e-28 98.4 0.3 2.4e-28 98.2 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.12 gi|330834013|ref|YP_004408741.1| - 0.0064 16.7 1.8 0.016 15.5 1.8 1.6 1 1 0 1 1 1 1 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) Ribosomal_S2 PF00318.20 gi|330834014|ref|YP_004408742.1| - 3.3e-26 91.9 0.0 1.6e-13 50.4 0.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|330834014|ref|YP_004408742.1| - 0.054 13.1 0.1 0.074 12.6 0.1 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain Memo PF01875.17 gi|330834015|ref|YP_004408743.1| - 2.1e-78 263.2 0.0 2.4e-78 263.0 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.18 gi|330834015|ref|YP_004408743.1| - 0.091 11.8 0.0 0.31 10.1 0.0 1.8 1 1 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AA_kinase PF00696.28 gi|330834017|ref|YP_004408745.1| - 4.4e-25 88.7 0.1 5.3e-25 88.4 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.18 gi|330834018|ref|YP_004408746.1| - 2.1e-22 79.6 0.1 9.3e-20 70.9 0.1 2.2 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|330834018|ref|YP_004408746.1| - 1.9e-05 23.8 0.8 0.003 16.6 0.1 3.1 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|330834018|ref|YP_004408746.1| - 0.00086 18.5 1.5 0.001 18.3 0.3 1.7 2 1 0 2 2 2 1 Conserved region in glutamate synthase NMO PF03060.15 gi|330834018|ref|YP_004408746.1| - 0.03 13.7 0.3 0.08 12.3 0.1 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase polyprenyl_synt PF00348.17 gi|330834019|ref|YP_004408747.1| - 6.4e-74 248.2 0.0 7.7e-74 248.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Biopterin_H PF00351.21 gi|330834019|ref|YP_004408747.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 Biopterin-dependent aromatic amino acid hydroxylase Glycos_transf_4 PF00953.21 gi|330834020|ref|YP_004408748.1| - 6.7e-31 107.4 18.4 6.7e-31 107.4 18.4 2.3 3 0 0 3 3 3 1 Glycosyl transferase family 4 DUF2953 PF11167.8 gi|330834020|ref|YP_004408748.1| - 0.029 14.4 1.2 0.26 11.4 0.1 3.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2953) Ribosomal_L7Ae PF01248.26 gi|330834021|ref|YP_004408749.1| - 2.4e-30 104.1 0.9 3e-30 103.8 0.9 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DUF1269 PF06897.12 gi|330834021|ref|YP_004408749.1| - 0.00076 19.7 0.8 0.97 9.8 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1269) PELOTA_1 PF15608.6 gi|330834021|ref|YP_004408749.1| - 0.0009 19.1 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain YtxH PF12732.7 gi|330834021|ref|YP_004408749.1| - 0.011 16.2 2.0 1.6 9.3 0.1 2.1 2 0 0 2 2 2 0 YtxH-like protein RNase_P_pop3 PF08228.11 gi|330834021|ref|YP_004408749.1| - 0.042 13.9 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 SE PF08491.10 gi|330834021|ref|YP_004408749.1| - 0.22 10.5 0.0 0.29 10.2 0.0 1.1 1 0 0 1 1 1 0 Squalene epoxidase tRNA-synt_1c PF00749.21 gi|330834022|ref|YP_004408750.1| - 1.5e-79 267.1 0.0 2.5e-79 266.4 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|330834022|ref|YP_004408750.1| - 1.4e-21 77.2 0.0 3.4e-21 75.9 0.0 1.7 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Hydrolase_3 PF08282.12 gi|330834023|ref|YP_004408751.1| - 3e-27 96.0 1.0 2e-14 54.0 1.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|330834023|ref|YP_004408751.1| - 2e-07 30.8 0.1 3.4e-05 23.5 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|330834023|ref|YP_004408751.1| - 6.2e-06 26.6 1.1 0.028 14.7 0.0 3.1 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|330834023|ref|YP_004408751.1| - 6.1e-05 23.2 0.9 0.011 15.8 0.0 3.0 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330834023|ref|YP_004408751.1| - 0.00012 22.6 1.9 0.014 15.8 0.0 3.1 1 1 2 3 3 3 1 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|330834023|ref|YP_004408751.1| - 0.00096 18.3 0.0 1 8.4 0.0 2.2 2 0 0 2 2 2 2 Trehalose-phosphatase Hydrolase_6 PF13344.6 gi|330834023|ref|YP_004408751.1| - 0.082 13.0 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HD PF01966.22 gi|330834024|ref|YP_004408752.1| - 1.2e-09 38.4 0.1 3.7e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 HD domain zf-H2C2_5 PF13909.6 gi|330834025|ref|YP_004408753.1| - 1.5 8.7 6.9 0.31 10.9 3.3 1.6 2 0 0 2 2 2 0 C2H2-type zinc-finger domain DUF1512 PF07431.12 gi|330834026|ref|YP_004408754.1| - 1.3e-138 461.9 11.3 1.5e-138 461.7 11.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Peptidase_M24 PF00557.24 gi|330834027|ref|YP_004408755.1| - 2.6e-39 135.1 0.0 3.1e-39 134.9 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Lactamase_B_2 PF12706.7 gi|330834028|ref|YP_004408756.1| - 8.8e-20 71.1 0.0 1.1e-19 70.8 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|330834028|ref|YP_004408756.1| - 1e-13 51.5 0.1 1.5e-13 50.9 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330834028|ref|YP_004408756.1| - 7.7e-06 26.0 0.1 0.02 14.9 0.0 2.1 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily tRNA-synt_2d PF01409.20 gi|330834029|ref|YP_004408757.1| - 1.2e-78 263.9 0.0 1.7e-78 263.5 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_24 PF13412.6 gi|330834029|ref|YP_004408757.1| - 1.6e-06 27.6 0.2 3e-06 26.7 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding tRNA-synt_2 PF00152.20 gi|330834029|ref|YP_004408757.1| - 2.7e-06 26.7 0.1 0.082 12.0 0.0 2.7 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) TrmB PF01978.19 gi|330834029|ref|YP_004408757.1| - 3.3e-06 26.9 2.7 2.9e-05 23.8 0.1 3.1 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB tRNA_synthFbeta PF17759.1 gi|330834029|ref|YP_004408757.1| - 5.8e-06 25.9 0.0 5.5e-05 22.7 0.0 2.2 1 1 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain HTH_27 PF13463.6 gi|330834029|ref|YP_004408757.1| - 0.00088 19.7 0.2 0.0081 16.6 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|330834029|ref|YP_004408757.1| - 0.0031 17.6 0.3 0.012 15.7 0.1 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|330834029|ref|YP_004408757.1| - 0.0077 16.0 0.0 0.095 12.5 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|330834029|ref|YP_004408757.1| - 0.026 14.4 0.1 0.66 9.9 0.0 3.0 2 0 0 2 2 2 0 MarR family PheRS_DBD3 PF18553.1 gi|330834029|ref|YP_004408757.1| - 0.026 14.8 0.0 0.099 12.9 0.0 2.1 1 0 0 1 1 1 0 PheRS DNA binding domain 3 DUF2250 PF10007.9 gi|330834029|ref|YP_004408757.1| - 0.058 13.5 1.2 0.19 11.8 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.12 gi|330834029|ref|YP_004408757.1| - 0.068 13.1 0.3 0.2 11.7 0.3 1.8 1 0 0 1 1 1 0 HTH domain HTH_Mga PF08280.11 gi|330834029|ref|YP_004408757.1| - 0.077 13.0 0.6 0.27 11.3 0.3 2.0 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain SelB-wing_2 PF09106.11 gi|330834029|ref|YP_004408757.1| - 0.13 12.5 1.1 1.9 8.7 0.1 2.8 3 0 0 3 3 3 0 Elongation factor SelB, winged helix DprA_WH PF17782.1 gi|330834029|ref|YP_004408757.1| - 0.17 12.0 0.0 0.53 10.4 0.0 1.8 2 0 0 2 2 1 0 DprA winged helix domain DUF501 PF04417.12 gi|330834029|ref|YP_004408757.1| - 0.19 11.6 0.0 0.42 10.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF501) MarR PF01047.22 gi|330834029|ref|YP_004408757.1| - 0.24 11.3 1.0 0.57 10.2 0.1 2.2 2 0 0 2 2 2 0 MarR family Penicillinase_R PF03965.16 gi|330834029|ref|YP_004408757.1| - 1.4 9.3 3.8 1.2 9.6 0.1 2.5 3 0 0 3 3 3 0 Penicillinase repressor tRNA_synthFbeta PF17759.1 gi|330834030|ref|YP_004408758.1| - 2.1e-31 109.1 0.0 3.3e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|330834030|ref|YP_004408758.1| - 8.3e-18 64.5 0.7 8.4e-16 58.0 0.2 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|330834030|ref|YP_004408758.1| - 7.2e-13 48.6 0.0 1.3e-12 47.7 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|330834030|ref|YP_004408758.1| - 8.4e-06 25.9 0.1 0.0017 18.6 0.0 3.5 2 1 0 2 2 2 1 Phe-tRNA synthetase beta subunit B1 domain DUF1192 PF06698.11 gi|330834030|ref|YP_004408758.1| - 0.16 12.1 0.1 0.48 10.5 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) Abhydrolase_1 PF00561.20 gi|330834031|ref|YP_004408759.1| - 1.4e-17 64.2 0.1 4.9e-17 62.4 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|330834031|ref|YP_004408759.1| - 3.5e-16 60.5 0.0 4e-16 60.3 0.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|330834031|ref|YP_004408759.1| - 8.6e-11 41.6 0.0 1.1e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|330834031|ref|YP_004408759.1| - 0.004 16.9 0.0 1.2 8.9 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Thioesterase PF00975.20 gi|330834031|ref|YP_004408759.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.6 1 1 0 1 1 1 0 Thioesterase domain MoCF_biosynth PF00994.24 gi|330834032|ref|YP_004408760.1| - 7.7e-30 103.5 0.2 1.4e-29 102.6 0.1 1.5 2 0 0 2 2 2 1 Probable molybdopterin binding domain SMC_ScpB PF04079.16 gi|330834032|ref|YP_004408760.1| - 0.051 13.2 0.2 0.13 11.9 0.1 1.7 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB Ribosomal_L29 PF00831.23 gi|330834032|ref|YP_004408760.1| - 0.43 10.6 4.1 0.55 10.2 0.1 2.7 2 1 0 2 2 2 0 Ribosomal L29 protein Aminotran_1_2 PF00155.21 gi|330834033|ref|YP_004408761.1| - 1.2e-37 129.9 0.0 1.4e-37 129.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|330834033|ref|YP_004408761.1| - 7.1e-11 41.5 0.0 1.5e-10 40.5 0.0 1.5 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase ADH_N PF08240.12 gi|330834034|ref|YP_004408762.1| - 0.0023 17.8 0.1 0.034 14.0 0.2 2.1 1 1 1 2 2 2 1 Alcohol dehydrogenase GroES-like domain HTH_Tnp_ISL3 PF13542.6 gi|330834035|ref|YP_004408763.1| - 1.5e-05 24.3 0.0 2.7e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 gi|330834035|ref|YP_004408763.1| - 0.00037 20.5 0.1 0.00087 19.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.6 gi|330834035|ref|YP_004408763.1| - 0.00046 20.3 0.3 0.0041 17.2 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|330834035|ref|YP_004408763.1| - 0.00091 19.0 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|330834035|ref|YP_004408763.1| - 0.002 17.8 1.1 0.0056 16.5 0.0 2.2 3 0 0 3 3 3 1 Homeodomain-like domain HTH_Tnp_1 PF01527.20 gi|330834035|ref|YP_004408763.1| - 0.0024 18.1 0.5 0.014 15.7 0.0 2.1 2 1 0 2 2 2 1 Transposase HTH_38 PF13936.6 gi|330834035|ref|YP_004408763.1| - 0.0025 17.6 1.1 0.01 15.6 0.1 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain IF2_N PF04760.15 gi|330834035|ref|YP_004408763.1| - 0.0058 16.4 0.0 0.023 14.5 0.0 2.0 1 0 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_7 PF02796.15 gi|330834035|ref|YP_004408763.1| - 0.0058 16.7 0.2 0.027 14.5 0.0 2.1 2 1 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_26 PF13443.6 gi|330834035|ref|YP_004408763.1| - 0.01 16.2 0.0 0.024 15.1 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_11 PF08279.12 gi|330834035|ref|YP_004408763.1| - 0.016 15.1 1.6 0.037 14.0 0.2 2.2 2 0 0 2 2 2 0 HTH domain KORA PF16509.5 gi|330834035|ref|YP_004408763.1| - 0.032 14.5 0.1 0.22 11.8 0.0 2.1 2 1 0 2 2 2 0 TrfB plasmid transcriptional repressor HTH_6 PF01418.17 gi|330834035|ref|YP_004408763.1| - 0.04 13.9 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family TelA PF05816.11 gi|330834036|ref|YP_004408764.1| - 0.0042 16.2 0.0 0.0049 16.0 0.0 1.1 1 0 0 1 1 1 1 Toxic anion resistance protein (TelA) HU-CCDC81_bac_2 PF18175.1 gi|330834036|ref|YP_004408764.1| - 0.016 15.0 0.1 0.025 14.4 0.1 1.3 1 0 0 1 1 1 0 CCDC81-like prokaryotic HU domain 2 DUF3375 PF11855.8 gi|330834036|ref|YP_004408764.1| - 0.077 11.9 0.0 0.077 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) XhlA PF10779.9 gi|330834036|ref|YP_004408764.1| - 0.13 12.5 2.9 0.25 11.6 2.9 1.5 1 0 0 1 1 1 0 Haemolysin XhlA DUF2192 PF09958.9 gi|330834037|ref|YP_004408765.1| - 2.8e-79 265.9 1.6 3.2e-79 265.7 1.6 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) HrcA_DNA-bdg PF03444.15 gi|330834038|ref|YP_004408766.1| - 6.9e-35 118.6 2.1 1.4e-34 117.6 0.1 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|330834038|ref|YP_004408766.1| - 2.4e-25 88.7 3.3 4.3e-12 46.3 1.8 2.7 2 0 0 2 2 2 2 CBS domain Rrf2 PF02082.20 gi|330834038|ref|YP_004408766.1| - 1.9e-08 34.5 0.1 1.1e-07 32.0 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|330834038|ref|YP_004408766.1| - 0.0084 16.0 0.1 0.024 14.5 0.1 1.8 1 0 0 1 1 1 1 HTH domain DUF512 PF04459.12 gi|330834038|ref|YP_004408766.1| - 0.072 12.4 1.2 1.2 8.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF512) Penicillinase_R PF03965.16 gi|330834038|ref|YP_004408766.1| - 0.12 12.7 0.0 23 5.4 0.0 2.4 2 0 0 2 2 2 0 Penicillinase repressor DEAD_assoc PF08494.11 gi|330834039|ref|YP_004408767.1| - 1.1e-50 172.1 0.2 2e-50 171.3 0.2 1.4 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|330834039|ref|YP_004408767.1| - 2.2e-30 105.7 0.0 6e-29 101.0 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330834039|ref|YP_004408767.1| - 8.8e-17 61.5 3.4 4.1e-16 59.3 0.2 2.9 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330834039|ref|YP_004408767.1| - 1.7e-08 34.7 0.2 1.2e-07 31.9 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit LapD_MoxY_N PF16448.5 gi|330834039|ref|YP_004408767.1| - 0.091 12.7 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 LapD/MoxY periplasmic domain Glyco_trans_2_3 PF13632.6 gi|330834040|ref|YP_004408768.1| - 7.5e-20 71.7 0.1 7.5e-20 71.7 0.1 2.0 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|330834040|ref|YP_004408768.1| - 9.3e-18 65.0 0.0 1.2e-17 64.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|330834040|ref|YP_004408768.1| - 2.2e-14 53.6 0.0 3e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|330834040|ref|YP_004408768.1| - 1.3e-10 41.1 0.0 2.9e-10 39.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|330834040|ref|YP_004408768.1| - 4.7e-06 26.3 0.0 9.3e-06 25.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|330834040|ref|YP_004408768.1| - 0.0012 17.4 0.6 0.0022 16.6 0.6 1.4 1 0 0 1 1 1 1 Cellulose synthase NADHdh PF00146.21 gi|330834040|ref|YP_004408768.1| - 0.0039 16.5 7.3 0.0066 15.8 7.3 1.3 1 0 0 1 1 1 1 NADH dehydrogenase ParBc PF02195.18 gi|330834041|ref|YP_004408769.1| - 4.6e-09 36.4 0.1 7.4e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|330834041|ref|YP_004408769.1| - 0.0074 15.2 0.7 0.16 10.8 0.1 2.4 1 1 1 3 3 3 1 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|330834041|ref|YP_004408769.1| - 0.053 13.6 0.0 0.07 13.2 0.0 1.2 1 0 0 1 1 1 0 Putative ParB-like nuclease DndB PF14072.6 gi|330834041|ref|YP_004408769.1| - 0.16 11.1 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 DNA-sulfur modification-associated HhH-GPD PF00730.25 gi|330834042|ref|YP_004408770.1| - 2.2e-18 66.7 0.0 3.6e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.6 gi|330834042|ref|YP_004408770.1| - 0.0042 17.7 0.1 0.015 15.9 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH PF00633.23 gi|330834042|ref|YP_004408770.1| - 0.049 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|330834042|ref|YP_004408770.1| - 0.69 10.3 7.6 1.3 9.5 7.6 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HTH_45 PF14947.6 gi|330834043|ref|YP_004408771.1| - 2.4e-05 24.2 0.0 3e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.12 gi|330834043|ref|YP_004408771.1| - 6.7e-05 21.5 0.2 8e-05 21.2 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) PadR PF03551.14 gi|330834043|ref|YP_004408771.1| - 0.0019 18.1 0.1 0.0047 16.9 0.1 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|330834043|ref|YP_004408771.1| - 0.006 16.4 0.1 0.0082 15.9 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF2250 PF10007.9 gi|330834043|ref|YP_004408771.1| - 0.017 15.2 0.1 5.5 7.2 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4364 PF14277.6 gi|330834043|ref|YP_004408771.1| - 0.021 14.6 0.0 0.021 14.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|330834043|ref|YP_004408771.1| - 0.039 14.0 0.1 0.04 14.0 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation TrmB PF01978.19 gi|330834043|ref|YP_004408771.1| - 0.048 13.5 0.2 0.083 12.8 0.0 1.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF3116 PF11313.8 gi|330834043|ref|YP_004408771.1| - 0.092 12.6 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) HTH_IclR PF09339.10 gi|330834043|ref|YP_004408771.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Methyltransf_11 PF08241.12 gi|330834044|ref|YP_004408772.1| - 0.0051 17.4 0.0 0.014 16.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.10 gi|330834044|ref|YP_004408772.1| - 0.0061 16.3 0.0 0.063 12.9 0.0 1.9 2 0 0 2 2 2 1 tRNA methyltransferase complex GCD14 subunit RrnaAD PF00398.20 gi|330834044|ref|YP_004408772.1| - 0.011 14.8 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.6 gi|330834044|ref|YP_004408772.1| - 0.012 15.4 0.1 2.1 8.1 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain PCMT PF01135.19 gi|330834044|ref|YP_004408772.1| - 0.021 14.6 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|330834044|ref|YP_004408772.1| - 0.025 15.3 0.0 0.058 14.1 0.0 1.7 2 1 0 2 2 2 0 Methyltransferase domain FtsJ PF01728.19 gi|330834044|ref|YP_004408772.1| - 0.057 13.5 0.0 0.21 11.7 0.0 1.7 1 1 1 2 2 2 0 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|330834044|ref|YP_004408772.1| - 0.073 12.9 0.0 0.093 12.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|330834044|ref|YP_004408772.1| - 0.078 12.3 0.0 0.24 10.6 0.0 1.7 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Pilin_N PF07790.11 gi|330834046|ref|YP_004408774.1| - 0.0048 17.8 0.7 0.01 16.7 0.7 1.8 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Gag_p24 PF00607.20 gi|330834047|ref|YP_004408775.1| - 0.097 12.5 0.0 0.54 10.1 0.0 1.9 2 0 0 2 2 2 0 gag gene protein p24 (core nucleocapsid protein) DUF2484 PF10658.9 gi|330834047|ref|YP_004408775.1| - 3.4 8.0 6.8 2.2 8.6 1.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2484) T2SSE PF00437.20 gi|330834048|ref|YP_004408776.1| - 6.1e-38 130.4 0.0 9.3e-38 129.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|330834048|ref|YP_004408776.1| - 1.3e-05 25.8 0.7 0.00031 21.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.27 gi|330834048|ref|YP_004408776.1| - 9.9e-05 22.9 0.0 0.00039 20.9 0.0 2.0 2 0 0 2 2 1 1 ABC transporter FtsK_SpoIIIE PF01580.18 gi|330834048|ref|YP_004408776.1| - 0.00077 18.9 0.0 0.0017 17.7 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|330834048|ref|YP_004408776.1| - 0.0012 18.5 0.1 0.0038 16.9 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain cobW PF02492.19 gi|330834048|ref|YP_004408776.1| - 0.0028 17.3 0.0 0.013 15.1 0.0 2.1 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_21 PF13304.6 gi|330834048|ref|YP_004408776.1| - 0.004 17.0 0.1 0.01 15.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system Dynamin_N PF00350.23 gi|330834048|ref|YP_004408776.1| - 0.0041 17.2 0.2 0.044 13.8 0.0 2.4 2 0 0 2 2 2 1 Dynamin family AAA_22 PF13401.6 gi|330834048|ref|YP_004408776.1| - 0.0049 17.1 0.0 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|330834048|ref|YP_004408776.1| - 0.0082 16.2 0.3 0.049 13.7 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|330834048|ref|YP_004408776.1| - 0.011 15.4 1.0 0.011 15.4 1.0 2.3 2 2 0 2 2 2 0 AAA ATPase domain DUF2853 PF11015.8 gi|330834048|ref|YP_004408776.1| - 0.012 16.3 0.0 2.4 8.9 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2853) DUF87 PF01935.17 gi|330834048|ref|YP_004408776.1| - 0.016 15.3 0.6 0.3 11.1 0.1 2.7 2 1 0 2 2 2 0 Helicase HerA, central domain Pox_A32 PF04665.12 gi|330834048|ref|YP_004408776.1| - 0.018 14.5 0.1 0.045 13.2 0.1 1.6 1 0 0 1 1 1 0 Poxvirus A32 protein AAA_16 PF13191.6 gi|330834048|ref|YP_004408776.1| - 0.031 14.6 0.0 0.065 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|330834048|ref|YP_004408776.1| - 0.036 13.6 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|330834048|ref|YP_004408776.1| - 0.053 12.8 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|330834048|ref|YP_004408776.1| - 0.078 11.9 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain RsgA_GTPase PF03193.16 gi|330834048|ref|YP_004408776.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ATP_bind_1 PF03029.17 gi|330834048|ref|YP_004408776.1| - 0.16 11.8 0.0 0.28 10.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TP_methylase PF00590.20 gi|330834050|ref|YP_004408778.1| - 9.4e-20 71.5 0.0 1.3e-19 71.0 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiD PF01888.17 gi|330834051|ref|YP_004408779.1| - 6.9e-82 274.5 0.5 9.3e-82 274.1 0.5 1.2 1 0 0 1 1 1 1 CbiD vATP-synt_AC39 PF01992.16 gi|330834051|ref|YP_004408779.1| - 0.016 14.8 0.0 0.024 14.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit Methyltr_RsmB-F PF01189.17 gi|330834052|ref|YP_004408780.1| - 4.7e-23 81.9 0.0 6.6e-23 81.4 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F CbiC PF02570.15 gi|330834053|ref|YP_004408781.1| - 4.1e-32 111.4 0.0 8e-31 107.2 0.0 2.0 1 1 0 1 1 1 1 Precorrin-8X methylmutase Na_H_antiport_1 PF06965.12 gi|330834053|ref|YP_004408781.1| - 0.087 11.7 0.3 0.11 11.3 0.3 1.1 1 0 0 1 1 1 0 Na+/H+ antiporter 1 Pyr_redox_2 PF07992.14 gi|330834056|ref|YP_004408784.1| - 7.5e-06 25.4 0.0 0.0006 19.1 0.0 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330834056|ref|YP_004408784.1| - 0.16 11.2 0.1 7.2 5.8 0.0 2.4 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330834056|ref|YP_004408784.1| - 0.25 10.4 0.0 0.41 9.7 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain UbiA PF01040.18 gi|330834058|ref|YP_004408786.1| - 3e-39 134.9 14.1 3.4e-39 134.6 14.1 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF5357 PF17310.2 gi|330834058|ref|YP_004408786.1| - 1 7.8 6.3 0.29 9.7 1.2 2.1 1 1 1 2 2 2 0 Family of unknown function (DUF5357) HMGL-like PF00682.19 gi|330834059|ref|YP_004408787.1| - 8.7e-54 182.8 0.1 1.3e-53 182.3 0.1 1.3 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|330834059|ref|YP_004408787.1| - 2.1e-22 79.4 0.0 4.1e-22 78.5 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain Gram_pos_anchor PF00746.21 gi|330834060|ref|YP_004408788.1| - 1.5 8.8 5.3 11 6.1 1.4 2.6 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Peripla_BP_2 PF01497.18 gi|330834061|ref|YP_004408789.1| - 9.9e-18 64.6 0.0 1.3e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TP_methylase PF00590.20 gi|330834062|ref|YP_004408790.1| - 1.4e-24 87.2 0.0 1.7e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Gp58 PF07902.11 gi|330834062|ref|YP_004408790.1| - 0.0041 15.5 2.4 0.0051 15.2 2.4 1.0 1 0 0 1 1 1 1 gp58-like protein Radical_SAM PF04055.21 gi|330834062|ref|YP_004408790.1| - 0.094 13.1 0.0 0.18 12.2 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily CbiG_N PF11760.8 gi|330834063|ref|YP_004408791.1| - 5.9e-16 58.2 0.1 8.7e-15 54.5 0.0 2.2 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|330834063|ref|YP_004408791.1| - 7.8e-11 42.6 0.0 1.3e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus DUF3843 PF12954.7 gi|330834063|ref|YP_004408791.1| - 0.1 11.6 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3843) Arc_PepC_II PF06847.11 gi|330834064|ref|YP_004408792.1| - 7.6e-21 74.4 0.9 1.9e-20 73.2 0.0 2.0 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|330834064|ref|YP_004408792.1| - 1.1e-07 32.2 7.8 1.1e-07 32.2 7.8 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family CobN-Mg_chel PF02514.16 gi|330834065|ref|YP_004408793.1| - 0 1052.0 0.0 0 1049.4 0.0 2.0 1 1 0 1 1 1 1 CobN/Magnesium Chelatase VWA_2 PF13519.6 gi|330834066|ref|YP_004408794.1| - 9.8e-16 58.3 0.0 3.7e-15 56.5 0.0 2.0 2 0 0 2 2 1 1 von Willebrand factor type A domain AAA_lid_2 PF17863.1 gi|330834066|ref|YP_004408794.1| - 1.9e-13 50.0 0.0 4.2e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 AAA lid domain Mg_chelatase PF01078.21 gi|330834066|ref|YP_004408794.1| - 2.1e-12 46.9 0.2 1.2e-06 28.1 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|330834066|ref|YP_004408794.1| - 3.1e-12 47.1 0.4 6.7e-12 46.0 0.4 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|330834066|ref|YP_004408794.1| - 8.2e-11 42.1 0.1 4.1e-06 26.8 0.0 2.8 3 0 0 3 3 3 2 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|330834066|ref|YP_004408794.1| - 2.1e-05 23.7 0.0 0.00023 20.3 0.0 2.5 2 1 0 2 2 2 1 MCM P-loop domain VWA_CoxE PF05762.14 gi|330834066|ref|YP_004408794.1| - 2.5e-05 23.8 0.0 4.6e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein AAA PF00004.29 gi|330834066|ref|YP_004408794.1| - 0.00024 21.5 0.0 0.0015 19.0 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase_C PF13335.6 gi|330834066|ref|YP_004408794.1| - 0.00025 21.6 0.3 0.00058 20.4 0.3 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI C-terminal Sigma54_activat PF00158.26 gi|330834066|ref|YP_004408794.1| - 0.00063 19.5 0.0 0.039 13.7 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain Tup_N PF08581.10 gi|330834066|ref|YP_004408794.1| - 0.0072 16.6 1.7 0.021 15.1 1.7 1.7 1 0 0 1 1 1 1 Tup N-terminal AAA_3 PF07726.11 gi|330834066|ref|YP_004408794.1| - 0.014 15.3 0.0 1.4 8.8 0.0 2.5 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330834066|ref|YP_004408794.1| - 0.016 15.5 0.0 0.14 12.5 0.0 2.5 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|330834066|ref|YP_004408794.1| - 0.038 14.4 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain MCM_lid PF17855.1 gi|330834066|ref|YP_004408794.1| - 0.07 13.6 0.3 0.17 12.3 0.3 1.6 1 0 0 1 1 1 0 MCM AAA-lid domain AAA_lid_9 PF17871.1 gi|330834066|ref|YP_004408794.1| - 0.1 12.5 0.5 0.34 10.9 0.5 1.8 1 0 0 1 1 1 0 AAA lid domain Rad17 PF03215.15 gi|330834066|ref|YP_004408794.1| - 0.11 12.5 0.2 0.58 10.1 0.0 2.3 2 0 0 2 2 2 0 Rad17 P-loop domain Acyl-CoA_dh_1 PF00441.24 gi|330834067|ref|YP_004408795.1| - 9.2e-40 136.3 7.8 1.5e-39 135.6 7.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|330834067|ref|YP_004408795.1| - 2.7e-23 82.0 0.0 6.7e-23 80.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|330834067|ref|YP_004408795.1| - 9.1e-19 68.1 3.9 1.5e-18 67.3 3.9 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|330834067|ref|YP_004408795.1| - 1.2e-16 61.4 0.9 3.9e-16 59.7 0.2 2.2 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain HpaB_N PF11794.8 gi|330834067|ref|YP_004408795.1| - 0.17 11.5 0.1 0.66 9.6 0.0 1.9 2 0 0 2 2 2 0 4-hydroxyphenylacetate 3-hydroxylase N terminal CitMHS PF03600.16 gi|330834068|ref|YP_004408796.1| - 4.8e-34 117.9 27.6 1.5e-33 116.3 24.9 2.1 1 1 1 2 2 2 2 Citrate transporter E1-E2_ATPase PF00122.20 gi|330834068|ref|YP_004408796.1| - 1.3 8.5 6.2 0.41 10.1 0.7 2.7 2 0 0 2 2 2 0 E1-E2 ATPase SLATT_5 PF18160.1 gi|330834068|ref|YP_004408796.1| - 7.9 5.7 7.1 14 4.9 3.7 2.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 5 MFS_1 PF07690.16 gi|330834069|ref|YP_004408797.1| - 4.3e-11 42.3 33.1 9.2e-11 41.3 33.1 1.5 1 1 0 1 1 1 1 Major Facilitator Superfamily 4HBT PF03061.22 gi|330834070|ref|YP_004408798.1| - 4.2e-23 81.5 0.3 4.5e-10 39.7 0.1 2.4 2 0 0 2 2 2 2 Thioesterase superfamily YIEGIA PF14045.6 gi|330834070|ref|YP_004408798.1| - 0.12 11.2 0.1 0.21 10.4 0.0 1.4 2 0 0 2 2 2 0 YIEGIA protein 4HBT_2 PF13279.6 gi|330834070|ref|YP_004408798.1| - 0.13 12.7 0.0 0.86 10.1 0.0 2.0 1 1 0 2 2 2 0 Thioesterase-like superfamily SapB_1 PF05184.15 gi|330834071|ref|YP_004408799.1| - 0.038 14.0 1.1 0.059 13.4 0.1 1.8 2 0 0 2 2 2 0 Saposin-like type B, region 1 DUF87 PF01935.17 gi|330834072|ref|YP_004408800.1| - 2e-14 54.3 1.5 1.3e-13 51.6 0.8 2.5 1 1 1 2 2 2 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|330834072|ref|YP_004408800.1| - 1.6e-08 33.9 0.0 4.2e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|330834072|ref|YP_004408800.1| - 3.1e-06 26.1 0.0 0.046 12.3 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ResIII PF04851.15 gi|330834072|ref|YP_004408800.1| - 1.3e-05 25.2 0.2 0.086 12.8 0.0 2.4 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|330834072|ref|YP_004408800.1| - 1.6e-05 24.4 0.0 3.5e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA PF00004.29 gi|330834072|ref|YP_004408800.1| - 6.7e-05 23.3 2.4 0.25 11.8 0.1 3.4 3 1 1 4 4 4 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330834072|ref|YP_004408800.1| - 8.2e-05 22.9 0.0 0.22 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.7 gi|330834072|ref|YP_004408800.1| - 0.00011 21.2 0.1 0.14 11.1 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain AAA_14 PF13173.6 gi|330834072|ref|YP_004408800.1| - 0.0019 18.2 1.4 0.95 9.5 0.0 2.8 3 0 0 3 3 3 2 AAA domain Zot PF05707.12 gi|330834072|ref|YP_004408800.1| - 0.0047 16.6 0.0 0.015 14.9 0.0 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) DEAD PF00270.29 gi|330834072|ref|YP_004408800.1| - 0.025 14.3 0.1 1 9.1 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|330834072|ref|YP_004408800.1| - 0.029 14.7 0.4 0.29 11.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|330834072|ref|YP_004408800.1| - 0.066 13.0 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|330834072|ref|YP_004408800.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|330834072|ref|YP_004408800.1| - 0.16 12.5 0.1 1.1 9.7 0.0 2.3 2 1 1 3 3 3 0 ABC transporter NurA PF09376.10 gi|330834073|ref|YP_004408801.1| - 1.2e-14 54.6 0.0 1.6e-14 54.2 0.0 1.1 1 0 0 1 1 1 1 NurA domain Rap_GAP PF02145.15 gi|330834073|ref|YP_004408801.1| - 0.18 11.3 0.6 0.36 10.4 0.6 1.5 1 1 0 1 1 1 0 Rap/ran-GAP Pyr_redox_2 PF07992.14 gi|330834074|ref|YP_004408802.1| - 8.9e-53 179.4 0.2 1.1e-52 179.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834074|ref|YP_004408802.1| - 3.8e-22 78.6 7.6 1.2e-17 64.2 2.7 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330834074|ref|YP_004408802.1| - 3.1e-16 59.6 0.2 1e-15 57.9 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|330834074|ref|YP_004408802.1| - 4.2e-14 52.5 1.3 2.6e-11 43.3 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330834074|ref|YP_004408802.1| - 8.3e-08 31.3 6.3 0.0062 15.3 0.1 3.9 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|330834074|ref|YP_004408802.1| - 2.3e-07 30.9 0.5 0.0044 17.2 0.0 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|330834074|ref|YP_004408802.1| - 3.4e-07 30.2 8.1 0.27 10.8 0.0 3.8 4 0 0 4 4 4 3 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|330834074|ref|YP_004408802.1| - 4.2e-06 26.2 0.3 0.088 12.1 0.0 2.3 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|330834074|ref|YP_004408802.1| - 5.1e-05 22.5 0.6 0.018 14.1 0.1 2.5 2 0 0 2 2 2 2 Lycopene cyclase protein GIDA PF01134.22 gi|330834074|ref|YP_004408802.1| - 0.00023 20.4 7.9 0.34 9.9 1.0 3.6 3 1 1 5 5 5 2 Glucose inhibited division protein A TrkA_N PF02254.18 gi|330834074|ref|YP_004408802.1| - 0.00053 20.2 1.1 0.064 13.5 0.9 2.3 2 0 0 2 2 2 1 TrkA-N domain Thi4 PF01946.17 gi|330834074|ref|YP_004408802.1| - 0.0018 17.5 0.5 0.011 15.0 0.1 2.2 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|330834074|ref|YP_004408802.1| - 0.0034 16.3 1.0 0.14 11.0 0.0 2.2 2 0 0 2 2 2 1 Tryptophan halogenase K_oxygenase PF13434.6 gi|330834074|ref|YP_004408802.1| - 0.0041 16.3 0.0 0.01 15.0 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|330834074|ref|YP_004408802.1| - 0.0046 16.1 5.6 0.0098 15.0 0.1 2.8 3 0 0 3 3 3 1 FAD binding domain 3HCDH_N PF02737.18 gi|330834074|ref|YP_004408802.1| - 0.0075 16.2 0.7 0.0075 16.2 0.7 1.6 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|330834074|ref|YP_004408802.1| - 0.014 15.3 5.9 11 6.0 0.1 3.8 3 1 1 4 4 4 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|330834074|ref|YP_004408802.1| - 0.036 14.5 0.1 8.4 6.9 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|330834074|ref|YP_004408802.1| - 0.04 13.3 0.2 0.36 10.2 0.1 2.3 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|330834074|ref|YP_004408802.1| - 0.06 13.9 1.2 0.14 12.8 0.2 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|330834074|ref|YP_004408802.1| - 0.077 13.0 0.6 0.12 12.3 0.1 1.6 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FAD_oxidored PF12831.7 gi|330834074|ref|YP_004408802.1| - 0.77 9.0 8.0 1.1 8.6 0.2 2.7 3 1 0 3 3 3 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330834074|ref|YP_004408802.1| - 4.8 6.3 5.3 1.7 7.8 0.6 2.1 2 0 0 2 2 2 0 FAD binding domain DUF4635 PF15466.6 gi|330834075|ref|YP_004408803.1| - 0.024 14.2 0.2 0.057 12.9 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4635) tRNA-synt_1e PF01406.19 gi|330834076|ref|YP_004408804.1| - 3.4e-121 404.2 0.5 5.5e-121 403.6 0.5 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|330834076|ref|YP_004408804.1| - 2.2e-15 56.3 1.1 3.2e-07 29.4 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) DALR_2 PF09190.11 gi|330834076|ref|YP_004408804.1| - 5.8e-09 36.3 2.9 1.7e-08 34.8 2.9 1.8 1 0 0 1 1 1 1 DALR domain tRNA-synt_1 PF00133.22 gi|330834076|ref|YP_004408804.1| - 2e-06 26.4 0.0 0.00025 19.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|330834076|ref|YP_004408804.1| - 2.9e-05 23.2 0.7 0.00068 18.6 0.1 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|330834076|ref|YP_004408804.1| - 0.00034 19.7 1.1 0.0017 17.3 0.1 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|330834076|ref|YP_004408804.1| - 0.0044 16.0 0.3 0.034 13.0 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (E and Q), catalytic domain NUDIX PF00293.28 gi|330834077|ref|YP_004408805.1| - 1.3e-15 57.6 0.0 1.6e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|330834077|ref|YP_004408805.1| - 0.0016 18.0 0.0 0.027 14.0 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) ELFV_dehydrog PF00208.21 gi|330834079|ref|YP_004408807.1| - 7.9e-67 225.5 0.6 1.2e-66 224.9 0.6 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|330834079|ref|YP_004408807.1| - 1.6e-54 183.2 0.0 9e-54 180.8 0.0 2.0 2 0 0 2 2 2 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|330834079|ref|YP_004408807.1| - 0.0045 16.4 0.0 0.0077 15.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2385 PF09539.10 gi|330834079|ref|YP_004408807.1| - 0.04 14.4 0.1 0.096 13.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2385) DUF131 PF01998.17 gi|330834080|ref|YP_004408808.1| - 1.5e-17 63.0 3.2 1.5e-17 63.0 3.2 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF3784 PF12650.7 gi|330834080|ref|YP_004408808.1| - 0.0016 18.6 2.5 0.002 18.3 2.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) SUR7 PF06687.12 gi|330834080|ref|YP_004408808.1| - 0.017 14.8 1.0 0.021 14.5 1.0 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF3742 PF12553.8 gi|330834080|ref|YP_004408808.1| - 0.071 13.2 0.2 0.2 11.7 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3742) Cyt_c_ox_IV PF12270.8 gi|330834080|ref|YP_004408808.1| - 0.11 12.7 2.7 2 8.5 1.2 2.1 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV GWT1 PF06423.12 gi|330834080|ref|YP_004408808.1| - 0.12 12.4 0.4 0.89 9.7 0.0 1.9 2 0 0 2 2 2 0 GWT1 DHHC PF01529.20 gi|330834080|ref|YP_004408808.1| - 0.17 12.0 0.7 0.24 11.5 0.7 1.2 1 0 0 1 1 1 0 DHHC palmitoyltransferase OAD_gamma PF04277.13 gi|330834080|ref|YP_004408808.1| - 0.27 11.8 0.2 0.27 11.8 0.2 2.0 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain YrhC PF14143.6 gi|330834080|ref|YP_004408808.1| - 0.74 9.9 5.7 2 8.6 0.3 2.1 2 0 0 2 2 2 0 YrhC-like protein Baculo_11_kDa PF06143.11 gi|330834080|ref|YP_004408808.1| - 0.83 9.3 5.4 8.1 6.1 0.1 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family AAA_15 PF13175.6 gi|330834081|ref|YP_004408809.1| - 8.8e-27 94.8 4.9 2e-18 67.2 0.0 2.6 2 1 1 3 3 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|330834081|ref|YP_004408809.1| - 3e-18 66.7 4.4 4.6e-17 62.8 1.4 2.9 3 1 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330834081|ref|YP_004408809.1| - 2.7e-06 27.0 0.1 5.4e-06 26.0 0.1 1.5 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330834081|ref|YP_004408809.1| - 0.0049 17.4 0.0 0.0082 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2813 PF11398.8 gi|330834081|ref|YP_004408809.1| - 0.087 12.1 0.4 0.67 9.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2813) Reprolysin PF01421.19 gi|330834081|ref|YP_004408809.1| - 0.13 12.1 0.1 0.27 11.1 0.1 1.6 1 0 0 1 1 1 0 Reprolysin (M12B) family zinc metalloprotease Leader_Erm PF08253.11 gi|330834081|ref|YP_004408809.1| - 5.8 7.5 5.7 2.6 8.5 0.0 3.3 3 0 0 3 3 3 0 Erm Leader peptide adh_short_C2 PF13561.6 gi|330834082|ref|YP_004408810.1| - 1.1e-44 152.7 0.0 1.6e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330834082|ref|YP_004408810.1| - 4.5e-30 104.6 0.0 5.7e-30 104.2 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330834082|ref|YP_004408810.1| - 0.03 14.3 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 KR domain THF_DHG_CYH_C PF02882.19 gi|330834082|ref|YP_004408810.1| - 0.093 12.0 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain UDG PF03167.19 gi|330834083|ref|YP_004408811.1| - 3.1e-45 153.9 0.0 4e-45 153.6 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MFS_1 PF07690.16 gi|330834084|ref|YP_004408812.1| - 2.3e-20 72.8 31.6 2.3e-20 72.8 31.6 2.9 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_1 PF07690.16 gi|330834085|ref|YP_004408813.1| - 2.1e-10 40.1 0.1 2.4e-10 39.9 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily DUF2070 PF09843.9 gi|330834086|ref|YP_004408814.1| - 4.9 5.3 8.2 5.7 5.1 8.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Peptidase_C50 PF03568.17 gi|330834087|ref|YP_004408815.1| - 0.017 14.3 0.3 0.02 14.0 0.3 1.0 1 0 0 1 1 1 0 Peptidase family C50 TauE PF01925.19 gi|330834088|ref|YP_004408816.1| - 7.5e-51 173.0 45.0 1.3e-50 172.2 45.0 1.4 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE SNARE_assoc PF09335.11 gi|330834089|ref|YP_004408817.1| - 1.9e-20 73.5 4.7 1.9e-20 73.5 4.7 1.4 2 0 0 2 2 2 1 SNARE associated Golgi protein Fe_dep_repr_C PF02742.15 gi|330834090|ref|YP_004408818.1| - 3.1e-19 68.8 0.0 5.1e-19 68.1 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|330834090|ref|YP_004408818.1| - 5.9e-07 29.6 0.0 9.8e-07 28.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|330834090|ref|YP_004408818.1| - 3.4e-05 23.7 0.0 5.8e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|330834090|ref|YP_004408818.1| - 3.6e-05 23.4 0.0 9.3e-05 22.1 0.0 1.6 2 0 0 2 2 2 1 LexA DNA binding domain HTH_45 PF14947.6 gi|330834090|ref|YP_004408818.1| - 7.7e-05 22.6 0.0 0.00014 21.7 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|330834090|ref|YP_004408818.1| - 0.00052 19.7 0.1 0.002 17.9 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|330834090|ref|YP_004408818.1| - 0.0015 18.4 0.0 0.0025 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|330834090|ref|YP_004408818.1| - 0.0021 18.0 0.0 0.0037 17.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|330834090|ref|YP_004408818.1| - 0.0024 17.7 0.0 0.087 12.7 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|330834090|ref|YP_004408818.1| - 0.0066 16.3 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|330834090|ref|YP_004408818.1| - 0.015 15.4 0.0 0.033 14.3 0.0 1.6 2 0 0 2 2 2 0 HemN C-terminal domain IF2_N PF04760.15 gi|330834090|ref|YP_004408818.1| - 0.053 13.3 0.6 1.6 8.6 0.0 2.7 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region Ribosomal_S19e PF01090.19 gi|330834090|ref|YP_004408818.1| - 0.063 13.0 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein S19e B-block_TFIIIC PF04182.12 gi|330834090|ref|YP_004408818.1| - 0.067 13.4 0.0 0.087 13.0 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|330834090|ref|YP_004408818.1| - 0.1 13.1 0.0 0.16 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.14 gi|330834090|ref|YP_004408818.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|330834090|ref|YP_004408818.1| - 0.11 12.6 0.1 0.27 11.4 0.1 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|330834090|ref|YP_004408818.1| - 0.12 12.0 0.1 0.16 11.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FaeA PF04703.12 gi|330834090|ref|YP_004408818.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein Na_H_Exchanger PF00999.21 gi|330834091|ref|YP_004408819.1| - 1.6e-29 102.9 44.6 2.1e-29 102.5 44.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|330834091|ref|YP_004408819.1| - 4.7e-08 33.4 6.2 0.0016 18.8 0.1 3.3 3 0 0 3 3 3 2 CBS domain PGG PF13962.6 gi|330834091|ref|YP_004408819.1| - 2.5 8.0 7.2 0.19 11.5 1.3 2.3 2 1 0 2 2 2 0 Domain of unknown function DHDPS PF00701.22 gi|330834092|ref|YP_004408820.1| - 5.6e-53 179.5 0.2 6.7e-53 179.3 0.2 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Ldi PF18566.1 gi|330834092|ref|YP_004408820.1| - 0.068 12.6 0.0 0.091 12.2 0.0 1.1 1 0 0 1 1 1 0 Linalool dehydratase/isomerase DUF1641 PF07849.11 gi|330834095|ref|YP_004408823.1| - 2.2e-16 59.5 0.4 1.8e-13 50.1 0.2 3.4 3 0 0 3 3 3 2 Protein of unknown function (DUF1641) PEP-utilisers_N PF05524.13 gi|330834095|ref|YP_004408823.1| - 0.17 12.1 0.0 21 5.3 0.0 2.9 3 0 0 3 3 3 0 PEP-utilising enzyme, N-terminal STI1 PF17830.1 gi|330834095|ref|YP_004408823.1| - 0.17 11.9 0.9 2.3 8.2 0.1 2.8 3 0 0 3 3 3 0 STI1 domain Pyr_redox_2 PF07992.14 gi|330834096|ref|YP_004408824.1| - 1e-19 70.9 0.0 4.1e-10 39.4 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834096|ref|YP_004408824.1| - 0.046 14.3 0.0 2.4 8.8 0.0 2.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_4 PF12146.8 gi|330834097|ref|YP_004408825.1| - 6.8e-15 55.0 0.0 4.4e-11 42.5 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|330834097|ref|YP_004408825.1| - 2.8e-14 53.4 0.0 8.8e-10 38.7 0.0 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|330834097|ref|YP_004408825.1| - 4.2e-14 53.7 0.0 1.4e-12 48.7 0.0 2.0 1 1 1 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|330834097|ref|YP_004408825.1| - 3.9e-06 26.7 0.0 5.1e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.14 gi|330834097|ref|YP_004408825.1| - 1.4e-05 23.9 0.0 0.0004 19.2 0.0 1.9 1 1 1 2 2 2 1 Ndr family Esterase PF00756.20 gi|330834097|ref|YP_004408825.1| - 0.15 11.7 0.0 0.4 10.3 0.0 2.0 1 1 0 1 1 1 0 Putative esterase DUF2250 PF10007.9 gi|330834098|ref|YP_004408826.1| - 2.9e-67 222.8 15.6 3.2e-36 123.3 3.7 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|330834098|ref|YP_004408826.1| - 1.4e-06 28.1 2.2 0.0013 18.4 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|330834098|ref|YP_004408826.1| - 0.00042 20.1 0.5 0.042 13.7 0.1 2.6 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.10 gi|330834098|ref|YP_004408826.1| - 0.0011 18.8 0.5 0.3 11.0 0.0 2.3 2 0 0 2 2 2 2 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_27 PF13463.6 gi|330834098|ref|YP_004408826.1| - 0.018 15.5 2.5 1.8 9.1 0.1 3.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain HemN_C PF06969.16 gi|330834098|ref|YP_004408826.1| - 0.056 13.5 0.5 0.58 10.3 0.2 2.5 2 0 0 2 2 2 0 HemN C-terminal domain MarR_2 PF12802.7 gi|330834098|ref|YP_004408826.1| - 0.082 12.8 0.1 0.95 9.4 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|330834098|ref|YP_004408826.1| - 0.1 12.6 1.7 9.9 6.3 0.0 2.8 2 1 0 2 2 2 0 Helix-turn-helix domain MarR PF01047.22 gi|330834098|ref|YP_004408826.1| - 0.11 12.5 0.5 0.57 10.2 0.0 2.4 2 0 0 2 2 2 0 MarR family Phage_sheath_1C PF17482.2 gi|330834098|ref|YP_004408826.1| - 0.12 12.4 1.3 4.2 7.4 0.2 2.9 1 1 2 3 3 3 0 Phage tail sheath C-terminal domain Matrilin_ccoil PF10393.9 gi|330834098|ref|YP_004408826.1| - 0.25 11.2 0.9 0.63 9.9 0.9 1.6 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin HTH_Crp_2 PF13545.6 gi|330834098|ref|YP_004408826.1| - 3.4 7.7 8.9 7.6 6.6 0.0 3.6 5 0 0 5 5 5 0 Crp-like helix-turn-helix domain MeaB PF03308.16 gi|330834099|ref|YP_004408827.1| - 2.3e-84 282.5 0.4 2.8e-84 282.3 0.4 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|330834099|ref|YP_004408827.1| - 1.2e-06 28.3 1.0 8.9e-06 25.4 1.0 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MMR_HSR1 PF01926.23 gi|330834099|ref|YP_004408827.1| - 0.00013 22.0 0.2 0.0004 20.5 0.2 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.17 gi|330834099|ref|YP_004408827.1| - 0.00016 21.5 0.7 0.0016 18.2 0.1 2.5 3 1 0 3 3 2 1 Conserved hypothetical ATP binding protein ABC_tran PF00005.27 gi|330834099|ref|YP_004408827.1| - 0.00017 22.1 0.3 0.00038 21.0 0.1 1.7 2 0 0 2 2 2 1 ABC transporter GTP_EFTU PF00009.27 gi|330834099|ref|YP_004408827.1| - 0.00026 20.6 1.1 0.058 12.9 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|330834099|ref|YP_004408827.1| - 0.00095 19.5 0.2 0.011 16.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|330834099|ref|YP_004408827.1| - 0.0012 18.8 1.1 0.0033 17.4 0.1 2.1 2 0 0 2 2 2 1 NTPase MipZ PF09140.11 gi|330834099|ref|YP_004408827.1| - 0.0012 18.2 0.0 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AAA_18 PF13238.6 gi|330834099|ref|YP_004408827.1| - 0.0013 19.2 0.4 0.0053 17.3 0.0 2.1 2 1 0 2 2 2 1 AAA domain MobB PF03205.14 gi|330834099|ref|YP_004408827.1| - 0.0016 18.4 0.1 0.0035 17.3 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.23 gi|330834099|ref|YP_004408827.1| - 0.002 18.2 0.0 0.0044 17.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain RsgA_GTPase PF03193.16 gi|330834099|ref|YP_004408827.1| - 0.0022 17.9 0.1 0.079 12.9 0.1 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|330834099|ref|YP_004408827.1| - 0.0025 17.5 0.1 0.0054 16.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.17 gi|330834099|ref|YP_004408827.1| - 0.0027 17.9 3.6 0.0039 17.3 0.5 2.1 2 0 0 2 2 2 1 Helicase HerA, central domain KAP_NTPase PF07693.14 gi|330834099|ref|YP_004408827.1| - 0.004 16.4 0.0 0.0082 15.4 0.0 1.4 1 1 0 1 1 1 1 KAP family P-loop domain DUF463 PF04317.12 gi|330834099|ref|YP_004408827.1| - 0.0041 16.1 0.0 0.0068 15.4 0.0 1.3 1 0 0 1 1 1 1 YcjX-like family, DUF463 IstB_IS21 PF01695.17 gi|330834099|ref|YP_004408827.1| - 0.0065 16.2 0.2 0.014 15.1 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|330834099|ref|YP_004408827.1| - 0.0084 15.5 0.9 0.019 14.4 0.2 1.8 2 0 0 2 2 2 1 FtsK/SpoIIIE family DDR PF08841.10 gi|330834099|ref|YP_004408827.1| - 0.0089 15.0 0.4 0.013 14.6 0.3 1.3 1 1 0 1 1 1 1 Diol dehydratase reactivase ATPase-like domain SRP54 PF00448.22 gi|330834099|ref|YP_004408827.1| - 0.01 15.4 0.0 0.17 11.5 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|330834099|ref|YP_004408827.1| - 0.017 15.5 0.3 0.041 14.3 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|330834099|ref|YP_004408827.1| - 0.022 14.0 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Viral_helicase1 PF01443.18 gi|330834099|ref|YP_004408827.1| - 0.023 14.5 0.3 0.048 13.4 0.1 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_29 PF13555.6 gi|330834099|ref|YP_004408827.1| - 0.025 14.3 0.2 0.053 13.3 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ploopntkinase3 PF18751.1 gi|330834099|ref|YP_004408827.1| - 0.04 13.8 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_16 PF13191.6 gi|330834099|ref|YP_004408827.1| - 0.065 13.6 0.0 0.16 12.4 0.0 1.6 2 0 0 2 2 1 0 AAA ATPase domain YonK PF09642.10 gi|330834099|ref|YP_004408827.1| - 0.08 13.1 0.6 1.5 9.0 0.1 2.4 2 0 0 2 2 2 0 YonK protein ArsA_ATPase PF02374.15 gi|330834099|ref|YP_004408827.1| - 0.088 12.0 1.4 0.19 10.9 0.0 2.2 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_28 PF13521.6 gi|330834099|ref|YP_004408827.1| - 0.091 13.0 0.2 0.27 11.4 0.1 1.9 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 gi|330834099|ref|YP_004408827.1| - 0.099 12.7 1.4 0.34 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|330834099|ref|YP_004408827.1| - 0.1 13.0 0.6 0.13 12.6 0.6 1.6 1 1 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|330834099|ref|YP_004408827.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MnmE_helical PF12631.7 gi|330834099|ref|YP_004408827.1| - 0.16 12.2 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 MnmE helical domain B12-binding PF02310.19 gi|330834100|ref|YP_004408828.1| - 8.5e-24 83.9 0.9 1e-23 83.7 0.9 1.1 1 0 0 1 1 1 1 B12 binding domain Peripla_BP_6 PF13458.6 gi|330834100|ref|YP_004408828.1| - 0.0054 16.4 0.0 0.0061 16.3 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Radical_SAM PF04055.21 gi|330834100|ref|YP_004408828.1| - 0.022 15.1 0.1 0.069 13.5 0.1 1.7 1 1 1 2 2 2 0 Radical SAM superfamily IMPDH PF00478.25 gi|330834100|ref|YP_004408828.1| - 0.044 12.8 0.2 0.058 12.4 0.2 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Nitro_FeMo-Co PF02579.17 gi|330834100|ref|YP_004408828.1| - 0.064 13.6 0.5 20 5.6 0.0 2.5 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor TPP_enzyme_N PF02776.18 gi|330834100|ref|YP_004408828.1| - 0.079 12.6 0.0 6.8 6.3 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Peripla_BP_4 PF13407.6 gi|330834100|ref|YP_004408828.1| - 0.12 11.9 0.1 0.27 10.8 0.1 1.6 1 1 0 1 1 1 0 Periplasmic binding protein domain UPF0147 PF03685.13 gi|330834101|ref|YP_004408829.1| - 1.9e-34 117.6 3.9 2.1e-34 117.4 3.9 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|330834101|ref|YP_004408829.1| - 0.0044 17.3 0.6 0.23 11.8 0.1 2.2 1 1 0 2 2 2 2 Uncharacterised protein family (UPF0253) Auto_anti-p27 PF06677.12 gi|330834102|ref|YP_004408830.1| - 1.4e-13 50.7 0.1 2.1e-13 50.2 0.1 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|330834102|ref|YP_004408830.1| - 0.07 12.7 0.2 0.15 11.6 0.2 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DUF723 PF05265.13 gi|330834102|ref|YP_004408830.1| - 0.085 12.8 0.4 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF723) CLP1_P PF16575.5 gi|330834103|ref|YP_004408831.1| - 4.9e-24 85.2 0.0 6.6e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_14 PF13173.6 gi|330834103|ref|YP_004408831.1| - 0.011 15.8 0.0 0.025 14.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain CLP1_N PF16573.5 gi|330834103|ref|YP_004408831.1| - 0.013 15.7 0.0 0.024 14.8 0.0 1.5 1 0 0 1 1 1 0 N-terminal beta-sandwich domain of polyadenylation factor AAA_24 PF13479.6 gi|330834103|ref|YP_004408831.1| - 0.058 13.1 0.0 0.093 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|330834103|ref|YP_004408831.1| - 0.063 13.8 0.1 0.14 12.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain Hepar_II_III PF07940.13 gi|330834103|ref|YP_004408831.1| - 0.16 11.5 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Heparinase II/III-like protein Terminase_6C PF17289.2 gi|330834104|ref|YP_004408832.1| - 0.042 13.9 0.0 0.062 13.4 0.0 1.4 1 0 0 1 1 1 0 Terminase RNaseH-like domain ATPase PF06745.13 gi|330834105|ref|YP_004408833.1| - 4e-05 23.1 1.9 0.011 15.1 0.2 2.1 1 1 1 2 2 2 2 KaiC AAA_24 PF13479.6 gi|330834105|ref|YP_004408833.1| - 0.0014 18.4 0.1 0.0025 17.6 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330834105|ref|YP_004408833.1| - 0.0018 18.7 0.0 0.0023 18.3 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|330834105|ref|YP_004408833.1| - 0.0043 16.6 0.1 0.51 9.9 0.0 2.1 1 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|330834105|ref|YP_004408833.1| - 0.035 13.6 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Elong_Iki1 PF10483.9 gi|330834105|ref|YP_004408833.1| - 0.049 13.1 0.0 0.056 12.9 0.0 1.1 1 0 0 1 1 1 0 Elongator subunit Iki1 AAA_16 PF13191.6 gi|330834105|ref|YP_004408833.1| - 0.053 13.9 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RecA PF00154.21 gi|330834105|ref|YP_004408833.1| - 0.073 12.5 0.1 0.16 11.4 0.0 1.5 2 0 0 2 2 2 0 recA bacterial DNA recombination protein Cofilin_ADF PF00241.20 gi|330834105|ref|YP_004408833.1| - 0.11 12.3 0.0 0.22 11.3 0.0 1.5 1 1 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein CarS-like PF01864.17 gi|330834106|ref|YP_004408834.1| - 3.1e-38 131.5 7.7 2e-37 128.9 7.7 1.8 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|330834106|ref|YP_004408834.1| - 0.0013 18.5 1.7 0.0013 18.5 1.7 1.9 2 0 0 2 2 2 1 Cytidylyltransferase family DUF347 PF03988.12 gi|330834106|ref|YP_004408834.1| - 0.0016 18.5 0.7 0.0016 18.5 0.7 2.5 3 1 0 3 3 3 1 Repeat of Unknown Function (DUF347) DUF5510 PF17629.2 gi|330834106|ref|YP_004408834.1| - 0.45 10.5 3.3 0.41 10.6 0.2 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5510) LHC PF00556.20 gi|330834106|ref|YP_004408834.1| - 0.57 10.4 3.1 2.4 8.4 3.1 2.1 1 0 0 1 1 1 0 Antenna complex alpha/beta subunit ABC2_membrane_5 PF13346.6 gi|330834107|ref|YP_004408835.1| - 0.0048 16.5 9.8 0.005 16.4 9.8 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF1772 PF08592.11 gi|330834107|ref|YP_004408835.1| - 0.19 12.0 1.5 0.47 10.8 1.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) Phage_holin_3_6 PF07332.11 gi|330834107|ref|YP_004408835.1| - 0.61 10.2 5.6 0.7 9.9 0.9 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III CPP1-like PF11833.8 gi|330834107|ref|YP_004408835.1| - 0.74 9.4 2.8 1.1 8.9 2.8 1.4 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like MCM PF00493.23 gi|330834109|ref|YP_004408837.1| - 1.6e-95 318.5 0.0 2.9e-95 317.6 0.0 1.5 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|330834109|ref|YP_004408837.1| - 4.6e-32 110.5 0.1 7.9e-32 109.8 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|330834109|ref|YP_004408837.1| - 1.9e-27 95.5 1.5 4.5e-27 94.3 1.5 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_N PF14551.6 gi|330834109|ref|YP_004408837.1| - 2e-17 63.7 0.3 5.5e-17 62.3 0.3 1.9 1 0 0 1 1 1 1 MCM N-terminal domain AAA_5 PF07728.14 gi|330834109|ref|YP_004408837.1| - 2.1e-08 34.3 0.0 6e-08 32.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|330834109|ref|YP_004408837.1| - 2.1e-06 27.3 0.1 0.00014 21.3 0.0 2.6 2 1 0 3 3 3 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|330834109|ref|YP_004408837.1| - 1.7e-05 24.6 0.0 3.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|330834109|ref|YP_004408837.1| - 1.8e-05 24.5 0.2 6.5e-05 22.7 0.2 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF3987 PF13148.6 gi|330834109|ref|YP_004408837.1| - 0.014 14.5 0.1 0.78 8.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MetOD1 PF18546.1 gi|330834109|ref|YP_004408837.1| - 0.037 14.0 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 1 0 Metanogen output domain 1 AAA_30 PF13604.6 gi|330834109|ref|YP_004408837.1| - 0.04 13.6 2.8 0.089 12.5 2.8 1.5 1 0 0 1 1 1 0 AAA domain INCENP_N PF12178.8 gi|330834109|ref|YP_004408837.1| - 0.045 13.7 0.5 3.5 7.7 0.1 2.7 2 0 0 2 2 2 0 Chromosome passenger complex (CPC) protein INCENP N terminal HEPN PF05168.14 gi|330834109|ref|YP_004408837.1| - 0.87 9.7 4.8 1.9 8.7 0.7 3.3 3 1 1 4 4 4 0 HEPN domain Sld5 PF05916.11 gi|330834110|ref|YP_004408838.1| - 7.2e-12 45.7 0.7 7.2e-12 45.7 0.7 1.8 2 0 0 2 2 2 1 GINS complex protein Arg_repressor PF01316.21 gi|330834110|ref|YP_004408838.1| - 0.056 13.2 0.2 0.2 11.4 0.0 2.1 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain DUF4350 PF14258.6 gi|330834110|ref|YP_004408838.1| - 0.063 13.7 0.1 10 6.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) DUF22 PF01629.16 gi|330834110|ref|YP_004408838.1| - 0.12 12.0 0.0 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF22 DUF4595 PF15283.6 gi|330834110|ref|YP_004408838.1| - 0.13 12.3 2.0 0.47 10.5 2.0 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4595) with porin-like fold THUMP PF02926.17 gi|330834111|ref|YP_004408839.1| - 0.00027 21.1 0.1 0.00033 20.8 0.1 1.1 1 0 0 1 1 1 1 THUMP domain Cdc6_C PF09079.11 gi|330834112|ref|YP_004408840.1| - 5.2e-18 64.8 0.5 1.1e-17 63.7 0.5 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|330834112|ref|YP_004408840.1| - 4.6e-14 52.9 0.2 2.2e-13 50.6 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA PF00004.29 gi|330834112|ref|YP_004408840.1| - 3.1e-06 27.7 0.1 9.4e-06 26.1 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|330834112|ref|YP_004408840.1| - 9.7e-06 25.1 0.0 2.4e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial TniB protein AAA_16 PF13191.6 gi|330834112|ref|YP_004408840.1| - 3e-05 24.5 0.1 0.00026 21.4 0.1 2.4 1 1 0 1 1 1 1 AAA ATPase domain T2SSE PF00437.20 gi|330834112|ref|YP_004408840.1| - 0.001 18.2 0.2 0.0018 17.4 0.2 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|330834112|ref|YP_004408840.1| - 0.012 15.5 2.3 0.064 13.2 0.3 2.4 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|330834112|ref|YP_004408840.1| - 0.013 15.2 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|330834112|ref|YP_004408840.1| - 0.015 14.8 0.1 0.03 13.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF465 PF04325.13 gi|330834112|ref|YP_004408840.1| - 0.025 14.6 0.3 0.098 12.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF465) AAA_19 PF13245.6 gi|330834112|ref|YP_004408840.1| - 0.032 14.6 0.0 0.55 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|330834112|ref|YP_004408840.1| - 0.055 13.4 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 NACHT domain MoaC PF01967.21 gi|330834113|ref|YP_004408841.1| - 2e-49 167.2 1.4 2.2e-49 167.0 1.4 1.0 1 0 0 1 1 1 1 MoaC family DUF150 PF02576.17 gi|330834113|ref|YP_004408841.1| - 0.042 14.2 0.0 0.06 13.8 0.0 1.3 1 0 0 1 1 1 0 RimP N-terminal domain AAA PF00004.29 gi|330834114|ref|YP_004408842.1| - 6.6e-16 58.9 0.0 1.4e-15 57.8 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|330834114|ref|YP_004408842.1| - 2.6e-11 43.5 0.0 1.3e-10 41.3 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|330834114|ref|YP_004408842.1| - 5.7e-08 32.9 0.0 8e-07 29.2 0.0 2.4 2 1 1 3 3 3 1 Rad17 P-loop domain AAA_assoc_2 PF16193.5 gi|330834114|ref|YP_004408842.1| - 2.6e-07 30.9 0.2 7.3e-07 29.4 0.1 1.9 2 0 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|330834114|ref|YP_004408842.1| - 1e-06 28.8 0.0 1.2e-05 25.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|330834114|ref|YP_004408842.1| - 1.7e-06 28.1 0.0 3.3e-06 27.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|330834114|ref|YP_004408842.1| - 1.2e-05 25.8 0.0 3.7e-05 24.2 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain RNA_helicase PF00910.22 gi|330834114|ref|YP_004408842.1| - 1.3e-05 25.5 0.0 0.00026 21.3 0.0 2.7 2 1 0 2 2 2 1 RNA helicase DNA_pol3_delta PF06144.13 gi|330834114|ref|YP_004408842.1| - 4.7e-05 23.2 0.0 0.00017 21.4 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase III, delta subunit DUF815 PF05673.13 gi|330834114|ref|YP_004408842.1| - 4.9e-05 22.6 0.0 8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.17 gi|330834114|ref|YP_004408842.1| - 0.00041 20.1 0.0 0.00086 19.1 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|330834114|ref|YP_004408842.1| - 0.00054 20.2 0.1 0.0096 16.2 0.0 2.8 2 1 1 3 3 3 1 AAA domain AAA_24 PF13479.6 gi|330834114|ref|YP_004408842.1| - 0.00073 19.3 0.2 0.0015 18.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|330834114|ref|YP_004408842.1| - 0.00089 18.9 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|330834114|ref|YP_004408842.1| - 0.0014 18.8 0.0 0.0037 17.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|330834114|ref|YP_004408842.1| - 0.0034 16.7 0.0 0.0058 15.9 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_17 PF13207.6 gi|330834114|ref|YP_004408842.1| - 0.0035 17.8 0.5 0.017 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|330834114|ref|YP_004408842.1| - 0.0051 16.8 0.3 1.2 9.1 0.1 3.5 3 0 0 3 3 3 1 NACHT domain IPT PF01745.16 gi|330834114|ref|YP_004408842.1| - 0.0066 15.9 0.0 0.017 14.6 0.0 1.6 1 1 0 1 1 1 1 Isopentenyl transferase AAA_18 PF13238.6 gi|330834114|ref|YP_004408842.1| - 0.01 16.3 0.0 0.028 15.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|330834114|ref|YP_004408842.1| - 0.017 14.5 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|330834114|ref|YP_004408842.1| - 0.018 14.4 0.0 0.034 13.5 0.0 1.5 1 0 0 1 1 1 0 KaiC ATPase_2 PF01637.18 gi|330834114|ref|YP_004408842.1| - 0.022 14.7 0.0 0.048 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|330834114|ref|YP_004408842.1| - 0.035 14.3 0.0 0.08 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|330834114|ref|YP_004408842.1| - 0.045 14.0 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain PHB_depo_C PF06850.11 gi|330834114|ref|YP_004408842.1| - 0.068 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 PHB de-polymerase C-terminus TsaE PF02367.17 gi|330834114|ref|YP_004408842.1| - 0.075 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Hydin_ADK PF17213.3 gi|330834114|ref|YP_004408842.1| - 0.076 13.3 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain DnaB_C PF03796.15 gi|330834114|ref|YP_004408842.1| - 0.09 12.1 0.0 1 8.7 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain AAA_11 PF13086.6 gi|330834114|ref|YP_004408842.1| - 0.11 12.3 0.1 0.59 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330834114|ref|YP_004408842.1| - 0.12 11.9 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Rep_fac_C PF08542.11 gi|330834115|ref|YP_004408843.1| - 3.3e-22 78.7 0.6 1.1e-21 77.0 0.2 2.1 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|330834115|ref|YP_004408843.1| - 3.2e-13 50.3 0.0 6.1e-13 49.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|330834115|ref|YP_004408843.1| - 3.6e-12 46.4 0.0 8.1e-08 32.2 0.0 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|330834115|ref|YP_004408843.1| - 1.5e-06 28.1 0.0 3.9e-06 26.7 0.0 1.7 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|330834115|ref|YP_004408843.1| - 1.6e-05 24.9 0.0 5.5e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_3 PF07726.11 gi|330834115|ref|YP_004408843.1| - 4e-05 23.5 0.0 7.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330834115|ref|YP_004408843.1| - 4e-05 23.9 0.1 0.033 14.4 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|330834115|ref|YP_004408843.1| - 7.9e-05 22.7 0.1 0.00079 19.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|330834115|ref|YP_004408843.1| - 0.00014 21.7 0.0 0.00027 20.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|330834115|ref|YP_004408843.1| - 0.00042 20.2 0.1 0.00084 19.2 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_11 PF13086.6 gi|330834115|ref|YP_004408843.1| - 0.00044 20.1 0.0 0.00074 19.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330834115|ref|YP_004408843.1| - 0.00048 20.5 0.0 0.015 15.7 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|330834115|ref|YP_004408843.1| - 0.00064 20.0 0.0 0.0015 18.8 0.0 1.6 1 0 0 1 1 1 1 AAA C-terminal domain TIP49 PF06068.13 gi|330834115|ref|YP_004408843.1| - 0.0019 17.4 0.0 0.0053 16.0 0.0 1.7 2 0 0 2 2 2 1 TIP49 P-loop domain ResIII PF04851.15 gi|330834115|ref|YP_004408843.1| - 0.0024 17.9 0.0 0.0071 16.4 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|330834115|ref|YP_004408843.1| - 0.0028 17.2 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region T2SSE PF00437.20 gi|330834115|ref|YP_004408843.1| - 0.0028 16.8 0.0 0.0056 15.8 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|330834115|ref|YP_004408843.1| - 0.0059 16.0 0.0 0.14 11.5 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|330834115|ref|YP_004408843.1| - 0.013 16.1 0.0 0.035 14.7 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_5 PF07728.14 gi|330834115|ref|YP_004408843.1| - 0.016 15.2 0.1 0.16 12.0 0.1 2.5 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|330834115|ref|YP_004408843.1| - 0.016 14.6 0.0 0.87 9.0 0.0 2.5 1 1 0 2 2 2 0 PhoH-like protein AAA_25 PF13481.6 gi|330834115|ref|YP_004408843.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|330834115|ref|YP_004408843.1| - 0.018 14.2 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|330834115|ref|YP_004408843.1| - 0.023 14.4 0.0 0.6 9.8 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|330834115|ref|YP_004408843.1| - 0.026 14.3 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|330834115|ref|YP_004408843.1| - 0.07 12.5 0.0 0.18 11.1 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.9 gi|330834115|ref|YP_004408843.1| - 0.097 11.9 0.1 0.45 9.7 0.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TniB PF05621.11 gi|330834115|ref|YP_004408843.1| - 0.1 12.0 0.0 0.59 9.5 0.0 2.0 1 1 0 2 2 2 0 Bacterial TniB protein Sigma54_activ_2 PF14532.6 gi|330834115|ref|YP_004408843.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|330834115|ref|YP_004408843.1| - 0.11 12.8 0.1 0.52 10.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|330834115|ref|YP_004408843.1| - 0.11 12.6 0.1 0.26 11.4 0.1 1.7 1 1 0 1 1 1 0 AAA domain PBP PF01161.20 gi|330834116|ref|YP_004408844.1| - 2.7e-34 118.3 0.0 3.2e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Proteasome PF00227.26 gi|330834117|ref|YP_004408845.1| - 1.4e-49 168.2 0.3 1.6e-49 168.0 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit TGF_beta_GS PF08515.12 gi|330834117|ref|YP_004408845.1| - 0.55 9.8 2.5 1.2 8.7 0.1 2.4 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif HTH_20 PF12840.7 gi|330834118|ref|YP_004408846.1| - 4.3e-09 36.3 0.0 6.2e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|330834118|ref|YP_004408846.1| - 8e-06 25.3 0.3 2.1e-05 24.0 0.0 1.9 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|330834118|ref|YP_004408846.1| - 2.7e-05 24.0 0.0 4.9e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|330834118|ref|YP_004408846.1| - 5.6e-05 22.8 0.0 9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 LexA DNA binding domain HTH_27 PF13463.6 gi|330834118|ref|YP_004408846.1| - 0.00029 21.3 0.0 0.00058 20.3 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|330834118|ref|YP_004408846.1| - 0.0011 18.9 0.1 0.0019 18.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain BLACT_WH PF17778.1 gi|330834118|ref|YP_004408846.1| - 0.0089 16.0 0.1 0.017 15.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain HTH_12 PF08461.10 gi|330834118|ref|YP_004408846.1| - 0.014 15.3 0.2 0.022 14.7 0.2 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|330834118|ref|YP_004408846.1| - 0.015 15.2 0.1 0.049 13.5 0.0 1.9 2 1 0 2 2 2 0 MarR family TrmB PF01978.19 gi|330834118|ref|YP_004408846.1| - 0.016 15.1 0.4 0.021 14.7 0.4 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|330834118|ref|YP_004408846.1| - 0.048 13.6 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|330834118|ref|YP_004408846.1| - 0.061 13.1 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain COX1 PF00115.20 gi|330834120|ref|YP_004408848.1| - 5e-77 259.6 63.0 5e-77 259.6 63.0 2.4 1 1 2 3 3 3 3 Cytochrome C and Quinol oxidase polypeptide I Cu-oxidase_3 PF07732.15 gi|330834121|ref|YP_004408849.1| - 0.00033 20.7 0.2 0.028 14.4 0.5 3.2 2 1 0 2 2 2 1 Multicopper oxidase TatD_DNase PF01026.21 gi|330834123|ref|YP_004408851.1| - 2.6e-50 171.2 0.0 3e-50 171.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Amidohydro_1 PF01979.20 gi|330834123|ref|YP_004408851.1| - 0.095 12.0 0.0 0.18 11.1 0.0 1.6 1 1 0 1 1 1 0 Amidohydrolase family MazE_antitoxin PF04014.18 gi|330834124|ref|YP_004408852.1| - 1.3e-10 41.0 0.1 1.4e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|330834124|ref|YP_004408852.1| - 0.0003 20.5 0.2 0.00036 20.3 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 PrlF_antitoxin PF15937.5 gi|330834124|ref|YP_004408852.1| - 0.0016 18.9 0.1 0.0017 18.7 0.1 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1131 PF06572.12 gi|330834124|ref|YP_004408852.1| - 0.066 12.9 0.0 0.066 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1131) TrmB PF01978.19 gi|330834125|ref|YP_004408853.1| - 5.2e-14 51.9 0.1 7.4e-14 51.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|330834125|ref|YP_004408853.1| - 5.7e-06 26.1 0.0 9.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|330834125|ref|YP_004408853.1| - 9.8e-06 25.3 0.6 1.9e-05 24.4 0.2 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|330834125|ref|YP_004408853.1| - 3.4e-05 23.7 0.2 5.5e-05 23.0 0.2 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|330834125|ref|YP_004408853.1| - 0.0001 22.1 0.1 0.00013 21.8 0.1 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit CENP-F_N PF10481.9 gi|330834125|ref|YP_004408853.1| - 0.0019 17.9 0.0 0.0022 17.7 0.0 1.0 1 0 0 1 1 1 1 Cenp-F N-terminal domain HTH_27 PF13463.6 gi|330834125|ref|YP_004408853.1| - 0.0025 18.3 0.1 0.0034 17.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|330834125|ref|YP_004408853.1| - 0.0093 15.7 0.4 0.013 15.2 0.4 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|330834125|ref|YP_004408853.1| - 0.017 15.2 0.1 0.03 14.4 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|330834125|ref|YP_004408853.1| - 0.036 14.2 0.0 0.089 13.0 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain z-alpha PF02295.17 gi|330834125|ref|YP_004408853.1| - 0.098 12.7 1.3 0.39 10.8 0.2 2.0 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain Amidohydro_1 PF01979.20 gi|330834126|ref|YP_004408854.1| - 3.6e-52 177.8 0.0 4.1e-52 177.6 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330834126|ref|YP_004408854.1| - 6e-13 49.1 0.0 6e-09 35.9 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|330834126|ref|YP_004408854.1| - 0.00062 19.2 0.0 0.00098 18.5 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Diphthami_syn_2 PF01902.17 gi|330834127|ref|YP_004408855.1| - 1e-41 142.9 0.0 1.1e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase NTP_transf_3 PF12804.7 gi|330834128|ref|YP_004408856.1| - 3.3e-21 76.3 0.0 4.2e-21 75.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|330834128|ref|YP_004408856.1| - 0.058 12.6 0.0 0.099 11.8 0.0 1.5 1 1 0 1 1 1 0 Guanylyl transferase CofC like MoeA_N PF03453.17 gi|330834129|ref|YP_004408857.1| - 4.4e-36 124.0 0.0 1.1e-35 122.7 0.0 1.7 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|330834129|ref|YP_004408857.1| - 2.8e-13 49.8 0.0 4.4e-13 49.1 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF3134 PF11332.8 gi|330834129|ref|YP_004408857.1| - 0.15 12.4 0.0 0.25 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3134) MobB PF03205.14 gi|330834130|ref|YP_004408858.1| - 3.9e-21 75.3 0.0 6e-21 74.7 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATPase_2 PF01637.18 gi|330834130|ref|YP_004408858.1| - 0.078 12.9 0.1 0.089 12.7 0.1 1.4 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea TrwB_AAD_bind PF10412.9 gi|330834130|ref|YP_004408858.1| - 0.1 11.5 0.1 0.19 10.6 0.0 1.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain CBS PF00571.28 gi|330834131|ref|YP_004408859.1| - 1.3e-10 41.6 6.8 1.4e-05 25.5 0.1 3.7 3 1 0 3 3 3 3 CBS domain LpxI_N PF17930.1 gi|330834131|ref|YP_004408859.1| - 0.0067 16.3 0.3 0.012 15.5 0.3 1.4 1 0 0 1 1 1 1 LpxI N-terminal domain NAD_binding_10 PF13460.6 gi|330834131|ref|YP_004408859.1| - 0.086 12.7 0.2 0.11 12.4 0.2 1.2 1 0 0 1 1 1 0 NAD(P)H-binding Methyltransf_11 PF08241.12 gi|330834132|ref|YP_004408860.1| - 1.3e-17 64.2 0.0 3.3e-17 62.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330834132|ref|YP_004408860.1| - 8.7e-13 48.8 0.0 2.3e-12 47.5 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330834132|ref|YP_004408860.1| - 1.6e-09 37.8 0.0 2.1e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330834132|ref|YP_004408860.1| - 1.7e-05 25.5 0.0 2.6e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330834132|ref|YP_004408860.1| - 0.00039 19.8 0.0 0.00054 19.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|330834132|ref|YP_004408860.1| - 0.0017 18.1 0.0 0.0045 16.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|330834132|ref|YP_004408860.1| - 0.031 13.4 0.0 0.039 13.1 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Bacteriocin_IIc PF10439.9 gi|330834134|ref|YP_004408862.1| - 0.011 15.9 3.2 0.016 15.3 3.2 1.3 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DUF456 PF04306.13 gi|330834134|ref|YP_004408862.1| - 0.011 16.1 2.7 0.017 15.4 2.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Gly-zipper_Omp PF13488.6 gi|330834134|ref|YP_004408862.1| - 0.27 11.3 6.2 0.41 10.7 6.2 1.2 1 0 0 1 1 1 0 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|330834134|ref|YP_004408862.1| - 0.42 10.4 4.9 0.74 9.6 4.9 1.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.6 gi|330834134|ref|YP_004408862.1| - 1.3 8.9 6.7 1.9 8.3 6.7 1.3 1 0 0 1 1 1 0 Glycine-zipper domain YmdB PF13277.6 gi|330834135|ref|YP_004408863.1| - 0.06 12.7 0.0 0.068 12.5 0.0 1.0 1 0 0 1 1 1 0 YmdB-like protein Fe_dep_repr_C PF02742.15 gi|330834136|ref|YP_004408864.1| - 7.3e-27 93.3 0.3 2.3e-26 91.7 0.2 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|330834136|ref|YP_004408864.1| - 2.6e-12 46.8 0.2 6.6e-12 45.5 0.0 1.8 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|330834136|ref|YP_004408864.1| - 8.9e-07 28.7 0.0 2.4e-06 27.4 0.0 1.8 1 0 0 1 1 1 1 MarR family FeoA PF04023.14 gi|330834136|ref|YP_004408864.1| - 2.7e-06 27.5 1.4 1.9e-05 24.8 0.4 2.2 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|330834136|ref|YP_004408864.1| - 2.1e-05 24.3 0.1 6.9e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|330834136|ref|YP_004408864.1| - 0.00035 21.0 0.0 0.00069 20.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|330834136|ref|YP_004408864.1| - 0.00069 19.1 0.0 0.0017 17.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|330834136|ref|YP_004408864.1| - 0.0008 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|330834136|ref|YP_004408864.1| - 0.00088 18.9 0.0 0.0047 16.5 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family AAA_assoc_C PF09821.9 gi|330834136|ref|YP_004408864.1| - 0.0021 18.6 0.0 0.0034 17.9 0.0 1.4 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_41 PF14502.6 gi|330834136|ref|YP_004408864.1| - 0.0028 17.3 0.0 0.0062 16.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|330834136|ref|YP_004408864.1| - 0.0075 16.0 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.19 gi|330834136|ref|YP_004408864.1| - 0.008 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|330834136|ref|YP_004408864.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.6 gi|330834136|ref|YP_004408864.1| - 0.022 14.7 0.3 0.072 13.1 0.1 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|330834136|ref|YP_004408864.1| - 0.023 14.7 0.1 0.067 13.1 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_45 PF14947.6 gi|330834136|ref|YP_004408864.1| - 0.035 14.1 0.0 0.057 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix PadR PF03551.14 gi|330834136|ref|YP_004408864.1| - 0.039 13.9 0.0 0.2 11.6 0.0 2.1 1 1 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_1 PF00126.27 gi|330834136|ref|YP_004408864.1| - 0.044 13.7 0.0 0.18 11.8 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HemN_C PF06969.16 gi|330834136|ref|YP_004408864.1| - 0.056 13.5 0.2 0.17 11.9 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain HTH_34 PF13601.6 gi|330834136|ref|YP_004408864.1| - 0.063 13.5 0.0 0.2 11.8 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|330834136|ref|YP_004408864.1| - 0.13 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|330834137|ref|YP_004408865.1| - 0.098 12.8 0.0 0.33 11.1 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4147 PF13660.6 gi|330834138|ref|YP_004408866.1| - 7.6e-50 169.6 0.0 1e-49 169.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|330834138|ref|YP_004408866.1| - 3.8e-27 94.6 0.0 1e-26 93.2 0.0 1.7 2 0 0 2 2 2 1 MOFRL family Oxidored_q6 PF01058.22 gi|330834139|ref|YP_004408867.1| - 1.2e-21 76.9 0.0 1.6e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Sua5_yciO_yrdC PF01300.18 gi|330834140|ref|YP_004408868.1| - 9.8e-56 188.1 0.0 1.5e-55 187.5 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|330834140|ref|YP_004408868.1| - 8e-26 91.2 0.0 1.3e-25 90.6 0.0 1.3 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding BPL_LplA_LipB PF03099.19 gi|330834141|ref|YP_004408869.1| - 2.5e-14 53.3 0.3 4.6e-14 52.5 0.3 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF366 PF04017.12 gi|330834141|ref|YP_004408869.1| - 0.0029 17.1 0.0 0.0049 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF366) Pyr_redox_2 PF07992.14 gi|330834142|ref|YP_004408870.1| - 6.4e-46 156.9 1.3 9e-46 156.4 1.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834142|ref|YP_004408870.1| - 7.6e-17 61.7 3.2 4e-11 43.3 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330834142|ref|YP_004408870.1| - 1.5e-14 54.1 0.1 8.7e-14 51.7 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 gi|330834142|ref|YP_004408870.1| - 1.5e-13 50.6 4.7 1.8e-05 24.0 0.5 3.6 4 0 0 4 4 4 3 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|330834142|ref|YP_004408870.1| - 1.6e-11 44.2 3.7 8.5e-08 32.3 0.4 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|330834142|ref|YP_004408870.1| - 3.4e-11 43.1 3.4 5.9e-10 39.1 0.5 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|330834142|ref|YP_004408870.1| - 7.9e-10 38.5 0.8 7.6e-05 22.1 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330834142|ref|YP_004408870.1| - 3.2e-08 33.1 5.7 3.3e-06 26.5 0.6 3.2 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|330834142|ref|YP_004408870.1| - 6.7e-08 32.2 1.1 0.0073 15.6 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|330834142|ref|YP_004408870.1| - 2.3e-06 26.6 4.4 1.8e-05 23.6 0.3 2.9 3 0 0 3 3 3 1 HI0933-like protein Thi4 PF01946.17 gi|330834142|ref|YP_004408870.1| - 0.00026 20.3 1.5 0.0072 15.6 0.3 2.3 2 0 0 2 2 2 1 Thi4 family DAO PF01266.24 gi|330834142|ref|YP_004408870.1| - 0.00078 19.1 8.0 0.011 15.4 0.6 2.9 3 1 0 3 3 3 2 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|330834142|ref|YP_004408870.1| - 0.0014 17.9 4.1 1.1 8.5 0.0 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|330834142|ref|YP_004408870.1| - 0.0082 16.0 0.5 3.6 7.4 0.0 2.6 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|330834142|ref|YP_004408870.1| - 0.019 15.4 0.1 7.1 7.1 0.0 2.4 2 0 0 2 2 2 0 Putative NAD(P)-binding Amino_oxidase PF01593.24 gi|330834142|ref|YP_004408870.1| - 0.024 14.0 0.3 0.41 9.9 0.1 2.4 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_9 PF13454.6 gi|330834142|ref|YP_004408870.1| - 0.037 14.0 0.5 3.7 7.5 0.1 3.2 3 0 0 3 3 3 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|330834142|ref|YP_004408870.1| - 0.063 12.9 0.5 2.4 7.8 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Usp PF00582.26 gi|330834143|ref|YP_004408871.1| - 1.2e-37 129.5 0.1 1.4e-37 129.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family PmbA_TldD PF01523.16 gi|330834144|ref|YP_004408872.1| - 1.2e-37 130.2 0.9 1.5e-37 129.9 0.9 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|330834145|ref|YP_004408873.1| - 2.9e-37 129.0 0.3 4e-37 128.6 0.3 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NikR_C PF08753.11 gi|330834146|ref|YP_004408874.1| - 4.2e-20 71.7 0.9 7.1e-20 71.0 0.9 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|330834146|ref|YP_004408874.1| - 0.0003 20.6 1.6 0.0003 20.6 1.6 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2482 PF10655.9 gi|330834146|ref|YP_004408874.1| - 0.031 14.8 0.1 0.054 14.0 0.1 1.4 1 0 0 1 1 1 0 Hypothetical protein of unknown function (DUF2482) RHH_3 PF12651.7 gi|330834146|ref|YP_004408874.1| - 0.045 13.7 1.3 0.054 13.5 0.5 1.6 2 0 0 2 2 2 0 Ribbon-helix-helix domain B3_4 PF03483.17 gi|330834147|ref|YP_004408875.1| - 2.7e-27 95.6 0.0 4.2e-27 94.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain Homoserine_dh PF00742.19 gi|330834148|ref|YP_004408876.1| - 1.6e-46 158.4 0.0 2.6e-46 157.7 0.0 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|330834148|ref|YP_004408876.1| - 3.7e-11 43.7 0.0 6.9e-11 42.8 0.0 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.21 gi|330834148|ref|YP_004408876.1| - 0.081 13.0 0.2 22 5.0 0.0 2.9 3 1 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UbiA PF01040.18 gi|330834149|ref|YP_004408877.1| - 1.3e-49 168.7 17.2 1.8e-49 168.3 17.2 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Jiraiya PF15038.6 gi|330834149|ref|YP_004408877.1| - 0.0027 17.2 0.2 0.008 15.6 0.1 1.8 1 1 0 1 1 1 1 Jiraiya Pox_A14 PF05767.12 gi|330834149|ref|YP_004408877.1| - 1.2 9.3 5.4 0.71 10.1 2.3 2.2 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 ECH_1 PF00378.20 gi|330834150|ref|YP_004408878.1| - 1.8e-76 256.8 0.0 2e-76 256.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|330834150|ref|YP_004408878.1| - 3.9e-45 154.8 0.0 5.5e-41 141.2 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Radical_SAM PF04055.21 gi|330834152|ref|YP_004408880.1| - 5.2e-15 56.2 0.0 1.3e-14 54.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DZR PF12773.7 gi|330834152|ref|YP_004408880.1| - 0.019 15.0 0.1 0.019 15.0 0.1 2.8 3 0 0 3 3 3 0 Double zinc ribbon Fer4_12 PF13353.6 gi|330834152|ref|YP_004408880.1| - 0.031 14.6 0.0 0.19 12.0 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain TF_Zn_Ribbon PF08271.12 gi|330834152|ref|YP_004408880.1| - 0.042 13.4 3.1 0.23 11.0 0.0 2.9 3 0 0 3 3 3 0 TFIIB zinc-binding IBR PF01485.21 gi|330834152|ref|YP_004408880.1| - 0.079 13.2 0.3 0.079 13.2 0.3 1.9 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|330834152|ref|YP_004408880.1| - 0.087 12.3 0.2 0.087 12.3 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain DpnI PF06044.12 gi|330834152|ref|YP_004408880.1| - 0.1 12.2 0.6 0.25 10.9 0.2 1.8 2 0 0 2 2 2 0 Dam-replacing family Adenosine_kin PF04008.14 gi|330834153|ref|YP_004408881.1| - 1.2e-76 255.7 0.1 1.4e-76 255.5 0.1 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DnaB_2 PF07261.11 gi|330834153|ref|YP_004408881.1| - 0.038 13.7 0.0 0.15 11.8 0.0 1.9 2 0 0 2 2 2 0 Replication initiation and membrane attachment Y_Y_Y PF07495.13 gi|330834154|ref|YP_004408882.1| - 7.6e-05 22.6 0.4 0.38 10.7 0.0 2.7 2 0 0 2 2 2 2 Y_Y_Y domain CarboxypepD_reg PF13620.6 gi|330834154|ref|YP_004408882.1| - 0.022 15.0 1.2 0.044 14.1 0.3 1.9 2 1 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF945 PF06097.11 gi|330834154|ref|YP_004408882.1| - 1.8 7.6 5.0 9.1 5.3 4.2 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF945) EI24 PF07264.11 gi|330834155|ref|YP_004408883.1| - 0.001 19.3 5.0 0.0019 18.5 4.5 1.7 1 1 0 1 1 1 1 Etoposide-induced protein 2.4 (EI24) VIT1 PF01988.19 gi|330834155|ref|YP_004408883.1| - 0.2 11.5 16.8 0.25 11.2 4.3 2.0 1 1 1 2 2 2 0 VIT family Cupin_2 PF07883.11 gi|330834156|ref|YP_004408884.1| - 1.2e-15 56.9 0.2 1.7e-15 56.4 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|330834156|ref|YP_004408884.1| - 8.2e-10 38.5 0.1 1.7e-09 37.4 0.1 1.5 1 1 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|330834156|ref|YP_004408884.1| - 2.6e-09 37.1 0.0 3.8e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|330834156|ref|YP_004408884.1| - 3.4e-07 30.4 0.0 6.2e-07 29.5 0.0 1.4 1 0 0 1 1 1 1 Mif2/CENP-C like MannoseP_isomer PF01050.18 gi|330834156|ref|YP_004408884.1| - 0.0014 18.5 0.2 0.0028 17.6 0.0 1.5 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase DMSP_lyase PF16867.5 gi|330834156|ref|YP_004408884.1| - 0.0014 18.3 0.0 0.0021 17.7 0.0 1.2 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase ARD PF03079.14 gi|330834156|ref|YP_004408884.1| - 0.0048 17.1 0.0 0.01 16.0 0.0 1.5 1 0 0 1 1 1 1 ARD/ARD' family Asp_Arg_Hydrox PF05118.15 gi|330834156|ref|YP_004408884.1| - 0.0069 16.2 0.0 0.018 14.9 0.0 1.6 1 1 1 2 2 2 1 Aspartyl/Asparaginyl beta-hydroxylase Auxin_BP PF02041.16 gi|330834156|ref|YP_004408884.1| - 0.0077 15.9 0.8 0.12 12.0 0.1 2.6 1 1 1 2 2 2 1 Auxin binding protein Ribosomal_L7Ae PF01248.26 gi|330834156|ref|YP_004408884.1| - 0.061 13.1 0.2 0.094 12.5 0.2 1.3 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Cupin_7 PF12973.7 gi|330834156|ref|YP_004408884.1| - 0.11 12.4 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 ChrR Cupin-like domain 3HCDH_N PF02737.18 gi|330834157|ref|YP_004408885.1| - 5.6e-56 189.3 0.1 8.1e-56 188.8 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|330834157|ref|YP_004408885.1| - 1.7e-19 70.2 0.1 3.8e-19 69.1 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|330834157|ref|YP_004408885.1| - 6.1e-07 29.5 0.2 2.5e-06 27.5 0.1 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|330834157|ref|YP_004408885.1| - 0.00011 22.4 0.1 0.00083 19.6 0.0 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|330834157|ref|YP_004408885.1| - 0.00025 20.4 0.1 0.00052 19.3 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834157|ref|YP_004408885.1| - 0.00061 20.3 0.0 0.0019 18.7 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|330834157|ref|YP_004408885.1| - 0.0042 16.7 0.1 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|330834157|ref|YP_004408885.1| - 0.018 14.2 0.2 0.027 13.6 0.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A adh_short PF00106.25 gi|330834157|ref|YP_004408885.1| - 0.033 13.6 0.1 0.071 12.6 0.1 1.7 1 1 0 1 1 1 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|330834157|ref|YP_004408885.1| - 0.038 13.6 0.7 0.094 12.3 0.7 1.9 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|330834157|ref|YP_004408885.1| - 0.043 14.4 0.2 0.15 12.6 0.0 2.1 2 1 1 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|330834157|ref|YP_004408885.1| - 0.05 12.9 0.0 0.14 11.4 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|330834157|ref|YP_004408885.1| - 0.083 13.3 0.3 0.21 12.1 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|330834157|ref|YP_004408885.1| - 0.09 12.1 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Translin PF01997.16 gi|330834158|ref|YP_004408886.1| - 3.8e-12 46.6 0.3 4.4e-07 30.1 0.0 2.2 1 1 0 2 2 2 2 Translin family RimK PF08443.11 gi|330834159|ref|YP_004408887.1| - 6e-29 101.0 0.0 2.2e-28 99.1 0.0 1.7 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|330834159|ref|YP_004408887.1| - 1.1e-08 35.3 0.1 2.4e-08 34.2 0.0 1.6 2 0 0 2 2 2 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|330834159|ref|YP_004408887.1| - 3.3e-07 29.9 0.0 5.4e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|330834159|ref|YP_004408887.1| - 0.026 13.8 0.0 0.66 9.2 0.0 2.2 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|330834159|ref|YP_004408887.1| - 0.033 13.8 0.0 0.089 12.4 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330834159|ref|YP_004408887.1| - 0.047 13.2 0.0 0.082 12.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|330834159|ref|YP_004408887.1| - 0.092 12.2 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|330834159|ref|YP_004408887.1| - 0.11 12.1 0.1 0.53 9.8 0.1 2.1 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.17 gi|330834160|ref|YP_004408888.1| - 5.9e-96 320.0 0.0 8e-67 224.8 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|330834160|ref|YP_004408888.1| - 3.9e-32 111.2 0.2 2.5e-31 108.6 0.1 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|330834160|ref|YP_004408888.1| - 2.6e-21 76.0 0.0 1.6e-10 40.8 0.0 2.3 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|330834160|ref|YP_004408888.1| - 3.3e-15 56.0 0.0 3.7e-08 33.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|330834160|ref|YP_004408888.1| - 2.6e-14 53.2 0.1 4.3e-07 29.7 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.11 gi|330834160|ref|YP_004408888.1| - 6.3e-12 45.5 0.0 1.5e-08 34.4 0.0 3.0 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|330834160|ref|YP_004408888.1| - 3.5e-10 40.2 0.3 1.9e-05 24.7 0.1 3.0 2 1 0 2 2 2 2 ATP-grasp domain GARS_A PF01071.19 gi|330834160|ref|YP_004408888.1| - 1.6e-08 34.6 0.1 0.00034 20.4 0.0 3.5 2 1 1 3 3 3 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|330834160|ref|YP_004408888.1| - 2.6e-06 27.0 0.0 0.0021 17.5 0.0 2.7 2 1 0 2 2 2 2 ATP-grasp domain MGS PF02142.22 gi|330834160|ref|YP_004408888.1| - 0.023 14.9 0.0 0.57 10.4 0.0 3.0 2 0 0 2 2 2 0 MGS-like domain GSH-S_ATP PF02955.16 gi|330834160|ref|YP_004408888.1| - 0.027 13.9 0.0 0.08 12.3 0.0 1.8 1 0 0 1 1 1 0 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_2 PF08442.10 gi|330834160|ref|YP_004408888.1| - 0.028 14.0 0.0 0.28 10.7 0.0 2.3 2 0 0 2 2 2 0 ATP-grasp domain Epimerase PF01370.21 gi|330834160|ref|YP_004408888.1| - 0.12 11.8 0.0 1.9 7.9 0.0 2.3 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family CPSase_sm_chain PF00988.22 gi|330834161|ref|YP_004408889.1| - 1.4e-43 147.8 0.0 2.4e-43 147.0 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|330834161|ref|YP_004408889.1| - 1.1e-42 146.0 0.0 1.5e-42 145.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330834161|ref|YP_004408889.1| - 9.8e-06 25.5 0.3 0.00017 21.4 0.3 2.2 1 1 0 1 1 1 1 Peptidase C26 Lyase_1 PF00206.20 gi|330834162|ref|YP_004408890.1| - 4e-39 134.9 0.2 7.8e-39 133.9 0.2 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|330834162|ref|YP_004408890.1| - 9.6e-05 23.1 0.0 0.00035 21.3 0.0 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal AF0941-like PF14591.6 gi|330834162|ref|YP_004408890.1| - 0.00033 21.2 0.3 0.00033 21.2 0.3 2.1 2 0 0 2 2 2 1 AF0941-like Arginosuc_synth PF00764.19 gi|330834163|ref|YP_004408891.1| - 4.7e-138 460.7 0.0 5.6e-138 460.5 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|330834163|ref|YP_004408891.1| - 0.00059 19.4 0.1 0.004 16.7 0.1 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Rh5 PF18515.1 gi|330834164|ref|YP_004408892.1| - 0.0008 18.8 0.4 0.001 18.4 0.4 1.1 1 0 0 1 1 1 1 Rh5 coiled-coil domain OrsD PF12013.8 gi|330834164|ref|YP_004408892.1| - 0.0034 17.8 0.4 0.0062 17.0 0.4 1.4 1 0 0 1 1 1 1 Orsellinic acid/F9775 biosynthesis cluster protein D PapB PF03333.13 gi|330834164|ref|YP_004408892.1| - 0.016 15.2 0.0 0.15 12.1 0.0 2.2 1 1 1 2 2 2 0 Adhesin biosynthesis transcription regulatory protein DUF4423 PF14394.6 gi|330834164|ref|YP_004408892.1| - 0.043 13.5 0.1 0.058 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) AIRS_C PF02769.22 gi|330834165|ref|YP_004408893.1| - 3.2e-23 82.6 0.0 5.6e-23 81.8 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330834165|ref|YP_004408893.1| - 1.3e-16 61.0 1.3 2.3e-16 60.2 1.3 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GARS_A PF01071.19 gi|330834166|ref|YP_004408894.1| - 3.6e-39 134.5 0.0 5.7e-39 133.9 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|330834166|ref|YP_004408894.1| - 1.4e-20 73.8 0.0 2.7e-20 72.9 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|330834166|ref|YP_004408894.1| - 7.7e-07 29.3 0.0 3.1e-06 27.4 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_ST PF14397.6 gi|330834166|ref|YP_004408894.1| - 0.00081 18.7 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|330834166|ref|YP_004408894.1| - 0.0011 18.6 0.0 0.0034 17.0 0.0 1.8 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330834166|ref|YP_004408894.1| - 0.0014 18.1 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|330834166|ref|YP_004408894.1| - 0.067 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain Pribosyltran PF00156.27 gi|330834167|ref|YP_004408895.1| - 1.9e-10 40.5 0.2 5e-10 39.1 0.2 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_7 PF13537.6 gi|330834167|ref|YP_004408895.1| - 0.00034 20.5 0.0 0.00058 19.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain PRTase_2 PF15609.6 gi|330834167|ref|YP_004408895.1| - 0.00099 18.7 0.1 0.0034 16.9 0.1 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase GATase_6 PF13522.6 gi|330834168|ref|YP_004408896.1| - 2e-10 41.0 0.0 5e-10 39.7 0.0 1.6 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330834168|ref|YP_004408896.1| - 7.6e-10 38.8 0.0 7.2e-09 35.6 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|330834168|ref|YP_004408896.1| - 5.5e-06 26.0 0.0 1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.6 gi|330834168|ref|YP_004408896.1| - 0.033 13.7 0.0 0.056 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase GATase_4 PF13230.6 gi|330834168|ref|YP_004408896.1| - 0.21 10.4 0.0 0.38 9.6 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II AIRS_C PF02769.22 gi|330834169|ref|YP_004408897.1| - 2.1e-38 131.9 0.0 3.3e-28 98.8 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330834169|ref|YP_004408897.1| - 5.1e-38 129.6 0.1 1.7e-20 73.5 0.3 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|330834169|ref|YP_004408897.1| - 1.1e-10 41.9 0.4 3.1e-10 40.4 0.4 1.8 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_5 PF13507.6 gi|330834170|ref|YP_004408898.1| - 2.5e-42 144.8 0.0 3.2e-42 144.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|330834170|ref|YP_004408898.1| - 2.3e-10 40.5 0.1 3.7e-10 39.9 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|330834170|ref|YP_004408898.1| - 4.7e-06 26.3 0.0 7.9e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|330834170|ref|YP_004408898.1| - 6.3e-05 22.8 0.0 9.3e-05 22.3 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I PurS PF02700.14 gi|330834171|ref|YP_004408899.1| - 3.3e-17 62.4 2.1 3.8e-17 62.2 2.1 1.1 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2204 PF09970.9 gi|330834171|ref|YP_004408899.1| - 0.018 14.7 2.6 0.019 14.6 2.6 1.1 1 0 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) SAICAR_synt PF01259.18 gi|330834172|ref|YP_004408900.1| - 2e-50 171.8 0.0 2.5e-50 171.5 0.0 1.0 1 0 0 1 1 1 1 SAICAR synthetase tRNA_bind PF01588.20 gi|330834173|ref|YP_004408901.1| - 1.9e-27 95.2 0.1 2.2e-27 95.0 0.1 1.1 1 0 0 1 1 1 1 Putative tRNA binding domain NOG1_N PF17835.1 gi|330834174|ref|YP_004408902.1| - 5.3e-34 117.5 0.3 1.7e-33 115.8 0.2 1.8 2 0 0 2 2 2 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|330834174|ref|YP_004408902.1| - 5.1e-21 74.9 0.0 8.5e-21 74.2 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|330834174|ref|YP_004408902.1| - 4.4e-18 64.8 0.1 8.5e-18 63.9 0.1 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|330834174|ref|YP_004408902.1| - 3.3e-13 49.4 0.0 5.3e-13 48.8 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|330834174|ref|YP_004408902.1| - 6e-06 25.9 0.1 0.00074 19.1 0.1 2.3 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|330834174|ref|YP_004408902.1| - 6.6e-05 22.3 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 AIG1 family Gtr1_RagA PF04670.12 gi|330834174|ref|YP_004408902.1| - 0.00025 20.5 0.0 0.00038 19.9 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region MMR_HSR1_Xtn PF16897.5 gi|330834174|ref|YP_004408902.1| - 0.00083 19.3 0.1 0.0023 17.9 0.1 1.7 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain RsgA_GTPase PF03193.16 gi|330834174|ref|YP_004408902.1| - 0.0027 17.6 2.1 0.38 10.6 0.2 2.9 1 1 1 2 2 2 1 RsgA GTPase AAA PF00004.29 gi|330834174|ref|YP_004408902.1| - 0.0038 17.6 0.1 0.016 15.6 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|330834174|ref|YP_004408902.1| - 0.0046 17.4 0.0 0.024 15.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Dynamin_N PF00350.23 gi|330834174|ref|YP_004408902.1| - 0.0057 16.7 1.2 0.23 11.5 0.0 2.4 1 1 1 2 2 2 1 Dynamin family TniB PF05621.11 gi|330834174|ref|YP_004408902.1| - 0.0062 16.0 0.1 0.045 13.2 0.0 2.3 2 1 0 2 2 2 1 Bacterial TniB protein NTPase_1 PF03266.15 gi|330834174|ref|YP_004408902.1| - 0.0083 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.17 gi|330834174|ref|YP_004408902.1| - 0.011 15.5 0.0 4.1 7.1 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|330834174|ref|YP_004408902.1| - 0.018 15.6 0.9 0.066 13.8 0.0 2.3 2 2 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|330834174|ref|YP_004408902.1| - 0.047 13.1 0.0 0.077 12.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Roc PF08477.13 gi|330834174|ref|YP_004408902.1| - 0.061 13.5 0.0 0.89 9.8 0.0 2.4 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_29 PF13555.6 gi|330834174|ref|YP_004408902.1| - 0.14 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Fer4_14 PF13394.6 gi|330834175|ref|YP_004408903.1| - 3.3e-16 59.5 0.0 5.1e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|330834175|ref|YP_004408903.1| - 1.2e-11 45.3 0.0 1.8e-11 44.7 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330834175|ref|YP_004408903.1| - 1.5e-09 38.3 0.0 2e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain hnRNP_Q_AcD PF18360.1 gi|330834176|ref|YP_004408904.1| - 0.049 13.6 0.2 0.1 12.5 0.0 1.5 2 0 0 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain Pyr_redox_2 PF07992.14 gi|330834177|ref|YP_004408905.1| - 1.9e-63 214.4 0.3 3.1e-63 213.7 0.3 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330834177|ref|YP_004408905.1| - 8.2e-26 90.4 0.6 1.8e-25 89.3 0.6 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|330834177|ref|YP_004408905.1| - 2.3e-22 79.3 9.7 1.5e-17 63.9 0.0 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330834177|ref|YP_004408905.1| - 2.8e-13 49.7 8.8 4.3e-10 39.2 0.9 3.4 2 1 0 3 3 3 3 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|330834177|ref|YP_004408905.1| - 5.4e-11 42.3 0.6 2.2e-10 40.3 0.5 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330834177|ref|YP_004408905.1| - 2.7e-10 39.9 0.1 0.00015 21.1 0.0 2.5 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|330834177|ref|YP_004408905.1| - 5.2e-10 39.3 0.2 1.9e-08 34.1 0.0 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330834177|ref|YP_004408905.1| - 2.7e-09 36.6 7.3 3.9e-06 26.2 2.5 3.6 4 0 0 4 4 4 2 FAD binding domain NAD_binding_8 PF13450.6 gi|330834177|ref|YP_004408905.1| - 8.3e-09 35.6 0.8 0.00049 20.3 0.5 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|330834177|ref|YP_004408905.1| - 3e-08 33.6 6.5 5.4e-06 26.2 1.6 3.2 4 0 0 4 4 4 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330834177|ref|YP_004408905.1| - 1.4e-07 30.6 7.6 0.0003 19.6 0.8 3.9 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|330834177|ref|YP_004408905.1| - 3.5e-05 23.2 0.9 0.011 15.0 0.3 2.4 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|330834177|ref|YP_004408905.1| - 0.00021 20.3 1.6 0.019 13.9 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|330834177|ref|YP_004408905.1| - 0.00031 19.9 4.4 0.15 11.1 1.6 2.8 3 1 0 3 3 3 2 Lycopene cyclase protein Thi4 PF01946.17 gi|330834177|ref|YP_004408905.1| - 0.0061 15.8 0.6 0.32 10.2 0.3 2.5 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|330834177|ref|YP_004408905.1| - 0.017 15.0 3.9 0.75 9.7 0.0 2.8 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|330834177|ref|YP_004408905.1| - 0.026 14.9 0.4 8.9 6.8 0.1 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding TrkA_N PF02254.18 gi|330834177|ref|YP_004408905.1| - 0.028 14.7 0.7 3.8 7.8 0.0 2.9 2 0 0 2 2 2 0 TrkA-N domain AcMNPV_Ac109 PF05054.12 gi|330834177|ref|YP_004408905.1| - 0.075 12.1 0.0 1.8 7.5 0.0 2.1 1 1 1 2 2 2 0 Autographa californica nuclear polyhedrosis virus (AcMNPV) protein DUF4876 PF16215.5 gi|330834177|ref|YP_004408905.1| - 0.089 12.8 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4876) IGR PF09597.10 gi|330834177|ref|YP_004408905.1| - 0.14 12.2 0.2 11 6.3 0.0 3.1 3 0 0 3 3 3 0 IGR protein motif HTH_5 PF01022.20 gi|330834178|ref|YP_004408906.1| - 2e-07 30.8 0.2 3e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330834178|ref|YP_004408906.1| - 0.00022 21.2 0.1 0.00039 20.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|330834178|ref|YP_004408906.1| - 0.023 14.7 0.3 0.043 13.8 0.3 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_9 PF08221.11 gi|330834178|ref|YP_004408906.1| - 0.052 13.7 0.8 0.086 13.0 0.8 1.4 1 1 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain TrmB PF01978.19 gi|330834178|ref|YP_004408906.1| - 0.088 12.7 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Ins_allergen_rp PF06757.13 gi|330834179|ref|YP_004408907.1| - 0.0066 16.4 0.6 0.008 16.2 0.6 1.2 1 0 0 1 1 1 1 Insect allergen related repeat, nitrile-specifier detoxification PhoU PF01895.19 gi|330834180|ref|YP_004408908.1| - 4.1e-26 91.3 1.7 8.3e-19 67.9 3.1 2.3 2 0 0 2 2 2 2 PhoU domain OMPdecase PF00215.24 gi|330834182|ref|YP_004408910.1| - 6e-23 81.6 0.0 8e-23 81.2 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.27 gi|330834183|ref|YP_004408911.1| - 1.4e-19 70.2 0.2 1.9e-19 69.7 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330834183|ref|YP_004408911.1| - 0.0025 17.3 0.0 0.0031 17.0 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase OTCace_N PF02729.21 gi|330834184|ref|YP_004408912.1| - 2.4e-40 137.9 0.0 4.1e-40 137.2 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|330834184|ref|YP_004408912.1| - 7.6e-21 74.8 0.0 1.3e-20 74.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|330834185|ref|YP_004408913.1| - 2.3e-32 111.1 3.6 3.1e-32 110.7 3.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|330834185|ref|YP_004408913.1| - 8.6e-16 57.6 0.6 1.5e-15 56.8 0.6 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DHODB_Fe-S_bind PF10418.9 gi|330834186|ref|YP_004408914.1| - 0.0017 18.1 5.2 0.0045 16.8 5.2 1.8 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Amidohydro_1 PF01979.20 gi|330834187|ref|YP_004408915.1| - 2.9e-15 56.4 0.0 3.1e-07 30.0 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|330834187|ref|YP_004408915.1| - 4.8e-08 32.9 0.0 2.4e-05 24.0 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DHO_dh PF01180.21 gi|330834188|ref|YP_004408916.1| - 2.6e-41 141.8 0.1 6.5e-41 140.5 0.1 1.6 1 1 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|330834188|ref|YP_004408916.1| - 0.029 13.5 0.0 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 Dihydrouridine synthase (Dus) HALZ PF02183.18 gi|330834190|ref|YP_004408918.1| - 0.00024 21.2 0.8 0.00024 21.2 0.8 2.2 2 1 0 2 2 2 1 Homeobox associated leucine zipper ZapB PF06005.12 gi|330834190|ref|YP_004408918.1| - 0.00083 19.8 7.9 0.071 13.6 4.1 2.2 2 0 0 2 2 2 2 Cell division protein ZapB bZIP_1 PF00170.21 gi|330834190|ref|YP_004408918.1| - 0.001 19.1 2.2 0.001 19.1 2.2 2.4 2 1 1 3 3 2 1 bZIP transcription factor HAP1_N PF04849.13 gi|330834190|ref|YP_004408918.1| - 0.0015 17.8 6.0 0.0021 17.3 6.0 1.4 1 1 0 1 1 1 1 HAP1 N-terminal conserved region PRKG1_interact PF15898.5 gi|330834190|ref|YP_004408918.1| - 0.003 18.4 2.5 0.003 18.4 2.5 1.9 2 1 0 2 2 1 1 cGMP-dependent protein kinase interacting domain bZIP_2 PF07716.15 gi|330834190|ref|YP_004408918.1| - 0.0044 17.1 4.1 0.0056 16.7 1.8 2.2 2 0 0 2 2 2 1 Basic region leucine zipper YabA PF06156.13 gi|330834190|ref|YP_004408918.1| - 0.0063 17.1 5.8 0.0067 17.0 4.3 1.7 1 1 1 2 2 2 1 Initiation control protein YabA DUF1824 PF08854.10 gi|330834190|ref|YP_004408918.1| - 0.0098 15.8 0.7 0.011 15.6 0.3 1.4 2 0 0 2 2 1 1 Domain of unknown function (DUF1824) DivIC PF04977.15 gi|330834190|ref|YP_004408918.1| - 0.0098 15.6 2.0 0.0098 15.6 2.0 2.7 2 1 1 3 3 3 1 Septum formation initiator DUF1640 PF07798.11 gi|330834190|ref|YP_004408918.1| - 0.012 15.7 2.6 0.016 15.3 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1640) GCN5L1 PF06320.13 gi|330834190|ref|YP_004408918.1| - 0.013 15.7 1.7 0.016 15.4 0.7 1.7 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF4407 PF14362.6 gi|330834190|ref|YP_004408918.1| - 0.016 14.5 1.7 0.02 14.3 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TMCO5 PF14992.6 gi|330834190|ref|YP_004408918.1| - 0.017 14.7 8.6 0.021 14.4 8.6 1.0 1 0 0 1 1 1 0 TMCO5 family Scaffolding_pro PF11418.8 gi|330834190|ref|YP_004408918.1| - 0.022 15.3 1.5 0.027 15.0 1.5 1.3 1 1 0 1 1 1 0 Phi29 scaffolding protein Uso1_p115_C PF04871.13 gi|330834190|ref|YP_004408918.1| - 0.022 15.1 8.6 0.03 14.7 8.6 1.3 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region FAM76 PF16046.5 gi|330834190|ref|YP_004408918.1| - 0.023 14.0 1.1 0.026 13.9 0.8 1.3 1 1 0 1 1 1 0 FAM76 protein UPF0240 PF06784.11 gi|330834190|ref|YP_004408918.1| - 0.034 14.2 3.7 0.044 13.8 3.7 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0240) Jnk-SapK_ap_N PF09744.9 gi|330834190|ref|YP_004408918.1| - 0.035 14.4 7.8 0.062 13.5 7.5 1.5 1 1 0 1 1 1 0 JNK_SAPK-associated protein-1 DUF3086 PF11285.8 gi|330834190|ref|YP_004408918.1| - 0.036 13.2 0.4 0.052 12.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3086) DUF2381 PF09544.10 gi|330834190|ref|YP_004408918.1| - 0.037 13.6 0.2 0.043 13.3 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) GIT_CC PF16559.5 gi|330834190|ref|YP_004408918.1| - 0.037 13.9 3.3 0.047 13.6 1.5 2.1 2 1 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor STAT_alpha PF01017.20 gi|330834190|ref|YP_004408918.1| - 0.038 13.9 3.5 0.074 12.9 3.5 1.6 1 1 0 1 1 1 0 STAT protein, all-alpha domain DUF724 PF05266.14 gi|330834190|ref|YP_004408918.1| - 0.045 13.6 4.9 0.055 13.3 4.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) COG5 PF10392.9 gi|330834190|ref|YP_004408918.1| - 0.049 13.8 2.9 0.08 13.1 2.9 1.5 1 1 0 1 1 1 0 Golgi transport complex subunit 5 APG6_N PF17675.1 gi|330834190|ref|YP_004408918.1| - 0.055 14.0 8.5 0.077 13.5 8.5 1.3 1 1 0 1 1 1 0 Apg6 coiled-coil region GLE1 PF07817.13 gi|330834190|ref|YP_004408918.1| - 0.091 12.0 1.2 0.12 11.6 1.2 1.2 1 0 0 1 1 1 0 GLE1-like protein RecG_N PF17190.4 gi|330834190|ref|YP_004408918.1| - 0.1 13.3 4.3 0.18 12.5 4.3 1.5 1 1 0 1 1 1 0 RecG N-terminal helical domain FapA PF03961.13 gi|330834190|ref|YP_004408918.1| - 0.13 10.8 3.8 0.16 10.6 3.8 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A ZYG-11_interact PF05884.12 gi|330834190|ref|YP_004408918.1| - 0.15 11.5 0.8 0.16 11.4 0.8 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 FlaC_arch PF05377.11 gi|330834190|ref|YP_004408918.1| - 0.17 12.3 6.9 0.24 11.8 2.3 2.5 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|330834190|ref|YP_004408918.1| - 0.17 11.9 1.8 0.31 11.1 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Seryl_tRNA_N PF02403.22 gi|330834190|ref|YP_004408918.1| - 0.21 11.9 7.1 1.1 9.5 3.2 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Ax_dynein_light PF10211.9 gi|330834190|ref|YP_004408918.1| - 0.26 11.2 8.1 0.06 13.3 4.3 1.7 1 1 1 2 2 2 0 Axonemal dynein light chain DUF5595 PF18077.1 gi|330834190|ref|YP_004408918.1| - 0.53 10.4 5.4 0.38 10.9 1.8 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF5595) V_ATPase_I PF01496.19 gi|330834190|ref|YP_004408918.1| - 0.53 8.1 3.4 0.58 8.0 3.4 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TSC22 PF01166.18 gi|330834190|ref|YP_004408918.1| - 0.89 9.9 7.1 0.18 12.1 2.1 2.3 2 1 1 3 3 2 0 TSC-22/dip/bun family M PF02370.16 gi|330834190|ref|YP_004408918.1| - 1.1 10.1 9.1 2.1 9.2 4.0 2.8 2 0 0 2 2 2 0 M protein repeat UPF0242 PF06785.11 gi|330834190|ref|YP_004408918.1| - 1.3 9.1 9.8 1.9 8.6 9.8 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus MarC PF01914.17 gi|330834191|ref|YP_004408919.1| - 1.6e-31 109.3 15.5 1.8e-31 109.1 15.5 1.0 1 0 0 1 1 1 1 MarC family integral membrane protein AsnC_trans_reg PF01037.21 gi|330834192|ref|YP_004408920.1| - 3.4e-17 62.2 0.6 5.1e-17 61.6 0.6 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|330834192|ref|YP_004408920.1| - 2.5e-12 46.2 0.4 1.3e-11 43.9 0.8 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330834192|ref|YP_004408920.1| - 3.2e-09 36.5 2.2 5.3e-09 35.8 2.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|330834192|ref|YP_004408920.1| - 8.4e-06 25.6 0.2 1.5e-05 24.8 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|330834192|ref|YP_004408920.1| - 0.00021 21.2 0.2 0.00044 20.1 0.2 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|330834192|ref|YP_004408920.1| - 0.0013 18.9 0.3 0.0063 16.7 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_10 PF04967.12 gi|330834192|ref|YP_004408920.1| - 0.0036 17.1 0.0 0.0068 16.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 gi|330834192|ref|YP_004408920.1| - 0.004 16.9 0.1 0.0072 16.1 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|330834192|ref|YP_004408920.1| - 0.0053 16.7 0.2 0.021 14.7 0.1 1.9 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|330834192|ref|YP_004408920.1| - 0.0081 16.5 0.2 0.061 13.7 0.0 2.3 3 0 0 3 3 3 1 Transcriptional regulator HTH_8 PF02954.19 gi|330834192|ref|YP_004408920.1| - 0.01 15.6 0.1 0.019 14.7 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_DeoR PF08220.12 gi|330834192|ref|YP_004408920.1| - 0.01 15.6 0.3 0.031 14.0 0.2 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|330834192|ref|YP_004408920.1| - 0.015 15.1 0.4 0.036 13.9 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ANAPC2 PF08672.11 gi|330834192|ref|YP_004408920.1| - 0.019 15.5 0.1 7 7.2 0.0 2.4 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 HTH_Crp_2 PF13545.6 gi|330834192|ref|YP_004408920.1| - 0.02 14.8 0.2 0.035 14.1 0.2 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_50 PF18024.1 gi|330834192|ref|YP_004408920.1| - 0.02 14.5 0.6 0.2 11.3 0.0 2.7 4 0 0 4 4 3 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|330834192|ref|YP_004408920.1| - 0.022 15.3 0.2 0.053 14.0 0.1 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|330834192|ref|YP_004408920.1| - 0.022 14.6 0.1 0.093 12.6 0.0 2.0 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|330834192|ref|YP_004408920.1| - 0.039 13.7 0.3 0.064 13.1 0.3 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain PCI PF01399.27 gi|330834192|ref|YP_004408920.1| - 0.043 14.3 0.1 0.15 12.5 0.0 1.8 2 0 0 2 2 2 0 PCI domain Clp_N PF02861.20 gi|330834192|ref|YP_004408920.1| - 0.056 13.6 0.0 0.15 12.2 0.0 1.7 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component HTH_38 PF13936.6 gi|330834192|ref|YP_004408920.1| - 0.059 13.2 0.6 0.1 12.4 0.3 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain DUF4250 PF14056.6 gi|330834192|ref|YP_004408920.1| - 0.088 12.8 0.1 0.23 11.4 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) HTH_20 PF12840.7 gi|330834192|ref|YP_004408920.1| - 0.093 12.8 0.2 0.14 12.2 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|330834192|ref|YP_004408920.1| - 0.11 13.1 0.1 0.31 11.6 0.0 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|330834192|ref|YP_004408920.1| - 0.13 11.7 0.1 0.23 10.9 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 FeoC PF09012.10 gi|330834192|ref|YP_004408920.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator RNA_POL_M_15KD PF02150.16 gi|330834193|ref|YP_004408921.1| - 2.3e-07 30.5 0.3 3.9e-07 29.8 0.3 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit DNA_RNApol_7kD PF03604.13 gi|330834193|ref|YP_004408921.1| - 0.017 14.8 0.2 0.03 14.0 0.2 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.11 gi|330834193|ref|YP_004408921.1| - 0.03 14.0 0.1 0.27 10.9 0.1 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Radical_SAM PF04055.21 gi|330834195|ref|YP_004408923.1| - 2e-16 60.8 0.1 4.9e-16 59.6 0.0 1.7 2 0 0 2 2 2 1 Radical SAM superfamily tRNA-synt_2b PF00587.25 gi|330834196|ref|YP_004408924.1| - 1.1e-36 126.5 0.0 2e-36 125.7 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|330834196|ref|YP_004408924.1| - 4.1e-16 59.2 7.9 4.1e-16 59.1 6.5 1.8 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Dor1 PF04124.12 gi|330834196|ref|YP_004408924.1| - 0.0042 15.8 1.7 0.23 10.1 0.6 2.2 2 0 0 2 2 2 2 Dor1-like family APG6_N PF17675.1 gi|330834196|ref|YP_004408924.1| - 0.0053 17.3 12.5 0.43 11.1 10.7 2.9 3 1 0 3 3 3 1 Apg6 coiled-coil region DUF4085 PF13315.6 gi|330834196|ref|YP_004408924.1| - 0.056 13.1 0.3 0.11 12.1 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) Peptidase_M29 PF02073.15 gi|330834196|ref|YP_004408924.1| - 0.076 11.8 0.2 0.12 11.1 0.2 1.2 1 0 0 1 1 1 0 Thermophilic metalloprotease (M29) FapA PF03961.13 gi|330834196|ref|YP_004408924.1| - 0.14 10.7 0.3 0.23 10.0 0.3 1.3 1 0 0 1 1 1 0 Flagellar Assembly Protein A Spectrin PF00435.21 gi|330834196|ref|YP_004408924.1| - 0.56 10.7 6.0 2 9.0 3.4 2.7 2 1 1 3 3 3 0 Spectrin repeat ZapB PF06005.12 gi|330834196|ref|YP_004408924.1| - 7.4 7.1 10.4 0.53 10.8 0.8 2.7 1 1 1 2 2 2 0 Cell division protein ZapB FeS_assembly_P PF01883.19 gi|330834197|ref|YP_004408925.1| - 4e-18 65.4 0.3 5.4e-18 64.9 0.3 1.2 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein YqhG PF11079.8 gi|330834197|ref|YP_004408925.1| - 0.048 12.6 0.0 0.11 11.4 0.0 1.5 2 0 0 2 2 2 0 Bacterial protein YqhG of unknown function PRA-CH PF01502.18 gi|330834198|ref|YP_004408926.1| - 1.5e-29 101.7 0.0 1.9e-29 101.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Nucleoplasmin PF03066.15 gi|330834198|ref|YP_004408926.1| - 0.048 14.2 0.1 9.4 6.8 0.0 2.1 2 0 0 2 2 2 0 Nucleoplasmin/nucleophosmin domain LpxI_N PF17930.1 gi|330834198|ref|YP_004408926.1| - 0.13 12.1 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 LpxI N-terminal domain GATase PF00117.28 gi|330834199|ref|YP_004408927.1| - 4.7e-18 65.6 0.0 5.5e-18 65.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|330834199|ref|YP_004408927.1| - 4.7e-06 26.3 0.0 7e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase_5 PF13507.6 gi|330834199|ref|YP_004408927.1| - 0.024 13.7 0.0 0.079 12.0 0.0 1.8 3 0 0 3 3 3 0 CobB/CobQ-like glutamine amidotransferase domain BPL_N PF09825.9 gi|330834199|ref|YP_004408927.1| - 0.055 12.5 0.0 0.072 12.2 0.0 1.1 1 0 0 1 1 1 0 Biotin-protein ligase, N terminal PRA-PH PF01503.17 gi|330834200|ref|YP_004408928.1| - 1.6e-17 63.7 0.0 1.7e-17 63.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|330834200|ref|YP_004408928.1| - 0.0032 17.6 0.1 0.0042 17.2 0.1 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain Histidinol_dh PF00815.20 gi|330834201|ref|YP_004408929.1| - 6e-120 401.0 0.0 9.1e-119 397.1 0.0 1.9 1 1 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.21 gi|330834202|ref|YP_004408930.1| - 1.8e-82 276.3 2.8 2e-82 276.1 2.8 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|330834202|ref|YP_004408930.1| - 1.8e-06 27.3 0.0 0.0045 16.1 0.0 2.1 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) TMP-TENI PF02581.17 gi|330834202|ref|YP_004408930.1| - 0.00018 20.9 0.1 0.21 10.9 0.0 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase NMO PF03060.15 gi|330834202|ref|YP_004408930.1| - 0.00033 20.2 1.5 0.46 9.8 0.7 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase ThiG PF05690.14 gi|330834202|ref|YP_004408930.1| - 0.0056 16.0 0.1 1 8.6 0.0 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG G3P_antiterm PF04309.12 gi|330834202|ref|YP_004408930.1| - 0.046 13.1 0.1 0.23 10.9 0.0 2.0 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator IMPDH PF00478.25 gi|330834202|ref|YP_004408930.1| - 0.067 12.2 0.1 0.36 9.8 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPD PF00475.18 gi|330834203|ref|YP_004408931.1| - 1.1e-52 178.1 0.2 3.8e-52 176.4 0.1 1.7 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|330834204|ref|YP_004408932.1| - 2.7e-49 167.7 0.6 3e-49 167.6 0.6 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NanE PF04131.14 gi|330834204|ref|YP_004408932.1| - 0.12 11.6 0.1 4.8 6.3 0.0 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase HisG PF01634.18 gi|330834205|ref|YP_004408933.1| - 1e-47 162.1 0.1 1.4e-47 161.7 0.1 1.1 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|330834205|ref|YP_004408933.1| - 1.1e-17 64.0 1.4 1.7e-17 63.4 0.7 1.8 2 0 0 2 2 2 1 HisG, C-terminal domain Hydrolase PF00702.26 gi|330834205|ref|YP_004408933.1| - 0.031 14.6 0.1 0.044 14.1 0.1 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase NIR_SIR_ferr PF03460.17 gi|330834205|ref|YP_004408933.1| - 0.081 12.8 0.9 1.5 8.7 0.1 3.2 4 1 0 4 4 4 0 Nitrite/Sulfite reductase ferredoxin-like half domain Glyco_hydro_98M PF08306.11 gi|330834205|ref|YP_004408933.1| - 0.12 11.7 0.0 0.17 11.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 98 Aminotran_1_2 PF00155.21 gi|330834206|ref|YP_004408934.1| - 1.2e-37 130.0 0.0 1.4e-37 129.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II tRNA-synt_1 PF00133.22 gi|330834208|ref|YP_004408936.1| - 3.3e-56 190.8 0.0 9.5e-55 186.0 0.0 2.6 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330834208|ref|YP_004408936.1| - 1.3e-25 90.2 3.1 3.7e-25 88.7 2.3 2.3 3 0 0 3 3 3 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|330834208|ref|YP_004408936.1| - 5.4e-25 88.0 0.4 4.5e-13 48.7 0.0 2.8 3 0 0 3 3 3 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|330834208|ref|YP_004408936.1| - 6.5e-13 48.7 0.0 1.4e-05 24.6 0.0 2.5 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|330834208|ref|YP_004408936.1| - 1.3e-09 37.8 0.0 3e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.19 gi|330834208|ref|YP_004408936.1| - 0.092 11.7 0.0 0.26 10.2 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (R) Cob_adeno_trans PF01923.18 gi|330834209|ref|YP_004408937.1| - 1.2e-44 152.4 0.0 1.3e-44 152.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ATP_bind_3 PF01171.20 gi|330834210|ref|YP_004408938.1| - 1.7e-11 44.2 0.0 2.8e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|330834210|ref|YP_004408938.1| - 0.0048 16.1 0.1 0.0071 15.5 0.1 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|330834210|ref|YP_004408938.1| - 0.047 12.5 0.0 0.06 12.1 0.0 1.1 1 0 0 1 1 1 0 tRNA methyl transferase PAPS_reduct PF01507.19 gi|330834210|ref|YP_004408938.1| - 0.062 13.3 0.0 0.12 12.4 0.0 1.7 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family zinc_ribbon_15 PF17032.5 gi|330834210|ref|YP_004408938.1| - 0.33 11.7 0.1 0.33 11.7 0.1 2.7 3 0 0 3 3 3 0 zinc-ribbon family DZR PF12773.7 gi|330834210|ref|YP_004408938.1| - 2.7 8.1 10.0 0.45 10.6 0.6 2.8 3 0 0 3 3 3 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|330834210|ref|YP_004408938.1| - 6.3 6.8 8.0 2.2 8.3 0.2 3.1 2 1 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger DUF211 PF02680.14 gi|330834211|ref|YP_004408939.1| - 1.1e-33 115.2 2.7 1.2e-33 115.1 2.7 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 AdoMet_dc PF02675.15 gi|330834212|ref|YP_004408940.1| - 7.4e-35 119.4 0.1 8.4e-35 119.2 0.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase DUF2482 PF10655.9 gi|330834213|ref|YP_004408941.1| - 0.047 14.2 0.2 0.12 12.9 0.0 1.7 2 0 0 2 2 2 0 Hypothetical protein of unknown function (DUF2482) Apq12 PF12716.7 gi|330834213|ref|YP_004408941.1| - 0.1 12.6 1.8 0.17 11.8 1.8 1.3 1 0 0 1 1 1 0 Nuclear pore assembly and biogenesis AbiEi_4 PF13338.6 gi|330834214|ref|YP_004408942.1| - 0.081 13.1 0.4 0.15 12.3 0.4 1.5 1 1 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin UbiA PF01040.18 gi|330834215|ref|YP_004408943.1| - 4.4e-35 121.2 13.3 4.4e-35 121.2 13.3 1.5 1 1 1 2 2 2 1 UbiA prenyltransferase family CARDB PF07705.11 gi|330834216|ref|YP_004408944.1| - 0.16 12.2 0.0 0.44 10.8 0.0 1.7 1 0 0 1 1 1 0 CARDB MMR_HSR1 PF01926.23 gi|330834217|ref|YP_004408945.1| - 3.4e-13 49.7 0.3 3.2e-11 43.3 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|330834217|ref|YP_004408945.1| - 1.8e-12 47.5 0.1 2.6e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 RsgA GTPase Dynamin_N PF00350.23 gi|330834217|ref|YP_004408945.1| - 3.9e-06 27.0 3.8 0.00012 22.2 0.3 2.6 2 1 1 3 3 3 1 Dynamin family FeoB_N PF02421.18 gi|330834217|ref|YP_004408945.1| - 2.4e-05 23.9 0.3 0.037 13.6 0.0 2.2 2 0 0 2 2 2 2 Ferrous iron transport protein B AAA_16 PF13191.6 gi|330834217|ref|YP_004408945.1| - 0.011 16.2 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.16 gi|330834217|ref|YP_004408945.1| - 0.011 15.1 0.0 0.047 13.0 0.1 1.9 2 0 0 2 2 2 0 AIG1 family MeaB PF03308.16 gi|330834217|ref|YP_004408945.1| - 0.044 12.8 0.2 0.15 11.0 0.1 1.8 1 1 1 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1_Xtn PF16897.5 gi|330834217|ref|YP_004408945.1| - 0.048 13.7 0.0 0.097 12.7 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain AAA_18 PF13238.6 gi|330834217|ref|YP_004408945.1| - 0.16 12.5 0.0 0.66 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain Acid_PPase PF12689.7 gi|330834218|ref|YP_004408946.1| - 3.5e-13 49.8 0.1 6.5e-13 48.9 0.1 1.4 1 1 0 1 1 1 1 Acid Phosphatase HAD_2 PF13419.6 gi|330834218|ref|YP_004408946.1| - 7.4e-12 45.7 0.2 3.9e-11 43.4 0.0 1.9 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330834218|ref|YP_004408946.1| - 4e-11 43.6 0.0 2.7e-09 37.6 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|330834218|ref|YP_004408946.1| - 0.00034 20.4 0.1 0.00039 20.2 0.1 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Ribosomal_L30 PF00327.20 gi|330834218|ref|YP_004408946.1| - 0.0014 18.5 0.0 0.023 14.6 0.0 2.3 2 0 0 2 2 2 1 Ribosomal protein L30p/L7e Hydrolase_3 PF08282.12 gi|330834218|ref|YP_004408946.1| - 0.058 13.1 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Cellulase-like PF12876.7 gi|330834218|ref|YP_004408946.1| - 0.067 12.5 0.1 0.11 11.8 0.0 1.4 2 0 0 2 2 2 0 Sugar-binding cellulase-like HAD PF12710.7 gi|330834218|ref|YP_004408946.1| - 0.071 13.5 0.1 1.2 9.5 0.0 2.0 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|330834218|ref|YP_004408946.1| - 0.074 13.2 0.0 0.3 11.2 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase TPP_enzyme_N PF02776.18 gi|330834219|ref|YP_004408947.1| - 7.2e-55 185.2 0.1 3.8e-53 179.6 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|330834219|ref|YP_004408947.1| - 4.7e-44 149.9 0.0 1.2e-43 148.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|330834219|ref|YP_004408947.1| - 1.3e-37 128.6 0.0 3e-37 127.4 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|330834219|ref|YP_004408947.1| - 0.0025 17.6 0.1 0.0083 15.9 0.1 1.8 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACT_5 PF13710.6 gi|330834220|ref|YP_004408948.1| - 3.1e-13 49.4 0.1 3.1e-13 49.4 0.1 1.5 2 0 0 2 2 2 1 ACT domain IlvN PF07991.12 gi|330834221|ref|YP_004408949.1| - 7.9e-73 243.5 0.0 1.3e-72 242.7 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|330834221|ref|YP_004408949.1| - 2.6e-51 173.7 4.1 4.5e-51 172.9 4.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|330834221|ref|YP_004408949.1| - 3.4e-09 37.2 0.0 1.8e-08 34.9 0.0 2.2 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.21 gi|330834221|ref|YP_004408949.1| - 8e-07 29.3 0.0 2.4e-05 24.5 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|330834221|ref|YP_004408949.1| - 9.7e-07 28.3 0.2 2.5e-06 27.0 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|330834221|ref|YP_004408949.1| - 9e-06 25.9 0.0 9.2e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|330834221|ref|YP_004408949.1| - 0.00057 19.6 0.0 0.002 17.8 0.0 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|330834221|ref|YP_004408949.1| - 0.0033 17.4 0.4 2.6 8.0 0.1 2.7 1 1 1 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|330834221|ref|YP_004408949.1| - 0.029 13.4 0.0 0.045 12.7 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase NAD_binding_7 PF13241.6 gi|330834221|ref|YP_004408949.1| - 0.15 12.5 0.0 0.42 11.1 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Hjc PF01870.18 gi|330834222|ref|YP_004408950.1| - 1e-28 99.1 0.0 1.4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|330834222|ref|YP_004408950.1| - 0.00034 20.1 0.0 0.00057 19.4 0.0 1.4 1 1 0 1 1 1 1 REase_AHJR-like UPF0102 PF02021.17 gi|330834222|ref|YP_004408950.1| - 0.0016 18.6 0.0 0.016 15.5 0.0 2.1 1 1 1 2 2 2 1 Uncharacterised protein family UPF0102 Mrr_cat PF04471.12 gi|330834222|ref|YP_004408950.1| - 0.046 13.7 0.0 0.078 13.0 0.0 1.5 1 1 0 1 1 1 0 Restriction endonuclease DUF3883 PF13020.6 gi|330834222|ref|YP_004408950.1| - 0.077 13.1 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3883) VRR_NUC PF08774.11 gi|330834222|ref|YP_004408950.1| - 0.11 12.6 0.1 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 VRR-NUC domain T2SSE PF00437.20 gi|330834223|ref|YP_004408951.1| - 4.7e-10 39.0 0.0 8e-10 38.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|330834223|ref|YP_004408951.1| - 2.3e-05 24.8 0.0 0.0012 19.2 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain RuvB_N PF05496.12 gi|330834223|ref|YP_004408951.1| - 0.0009 19.0 0.0 0.015 15.0 0.0 2.9 4 0 0 4 4 4 1 Holliday junction DNA helicase RuvB P-loop domain DnaB_C PF03796.15 gi|330834223|ref|YP_004408951.1| - 0.0014 18.0 0.1 0.004 16.5 0.0 1.8 2 0 0 2 2 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|330834223|ref|YP_004408951.1| - 0.0017 18.2 0.0 0.004 16.9 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|330834223|ref|YP_004408951.1| - 0.0025 18.3 0.0 0.011 16.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain Bac_DnaA PF00308.18 gi|330834223|ref|YP_004408951.1| - 0.0029 17.5 0.5 5.8 6.7 0.0 3.3 3 0 0 3 3 3 0 Bacterial dnaA protein AAA PF00004.29 gi|330834223|ref|YP_004408951.1| - 0.0048 17.3 0.0 0.013 15.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|330834223|ref|YP_004408951.1| - 0.0062 16.7 0.0 0.14 12.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|330834223|ref|YP_004408951.1| - 0.0062 16.2 0.2 0.011 15.4 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|330834223|ref|YP_004408951.1| - 0.0096 15.2 0.0 0.024 13.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin NTPase_1 PF03266.15 gi|330834223|ref|YP_004408951.1| - 0.012 15.6 0.1 0.036 14.0 0.1 1.8 1 0 0 1 1 1 0 NTPase RNA_helicase PF00910.22 gi|330834223|ref|YP_004408951.1| - 0.012 16.0 0.0 0.094 13.1 0.0 2.3 2 0 0 2 2 2 0 RNA helicase NACHT PF05729.12 gi|330834223|ref|YP_004408951.1| - 0.015 15.2 0.1 0.038 13.9 0.1 1.7 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|330834223|ref|YP_004408951.1| - 0.016 15.2 0.0 0.034 14.2 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|330834223|ref|YP_004408951.1| - 0.021 15.1 0.1 0.43 10.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|330834223|ref|YP_004408951.1| - 0.025 13.6 0.0 0.052 12.5 0.0 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ABC_tran PF00005.27 gi|330834223|ref|YP_004408951.1| - 0.025 15.1 0.0 0.062 13.8 0.0 1.8 2 0 0 2 2 1 0 ABC transporter KTI12 PF08433.10 gi|330834223|ref|YP_004408951.1| - 0.031 13.7 0.0 0.092 12.2 0.0 1.8 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_14 PF13173.6 gi|330834223|ref|YP_004408951.1| - 0.032 14.3 0.0 0.092 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|330834223|ref|YP_004408951.1| - 0.034 14.3 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain ATP_bind_1 PF03029.17 gi|330834223|ref|YP_004408951.1| - 0.034 13.9 0.5 0.068 12.9 0.1 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_25 PF13481.6 gi|330834223|ref|YP_004408951.1| - 0.047 13.3 0.0 0.095 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|330834223|ref|YP_004408951.1| - 0.051 13.8 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|330834223|ref|YP_004408951.1| - 0.051 13.6 0.1 0.11 12.4 0.1 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_5 PF07728.14 gi|330834223|ref|YP_004408951.1| - 0.052 13.5 0.0 0.18 11.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|330834223|ref|YP_004408951.1| - 0.074 12.2 0.0 0.15 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_24 PF13479.6 gi|330834223|ref|YP_004408951.1| - 0.078 12.7 0.7 0.14 11.8 0.2 1.7 2 0 0 2 2 2 0 AAA domain RNA_pol_Rpb5_C PF01191.19 gi|330834223|ref|YP_004408951.1| - 0.1 12.5 0.5 0.41 10.6 0.1 2.1 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain Sigma54_activat PF00158.26 gi|330834223|ref|YP_004408951.1| - 0.11 12.2 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|330834223|ref|YP_004408951.1| - 0.12 12.7 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_CBD PF04963.13 gi|330834223|ref|YP_004408951.1| - 0.14 12.0 0.2 0.31 10.9 0.2 1.5 1 0 0 1 1 1 0 Sigma-54 factor, core binding domain AAA_3 PF07726.11 gi|330834223|ref|YP_004408951.1| - 0.14 12.0 0.0 0.37 10.7 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|330834223|ref|YP_004408951.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain PIN_5 PF08745.11 gi|330834223|ref|YP_004408951.1| - 0.16 11.4 1.0 1.9 7.8 1.0 2.5 2 1 0 2 2 2 0 PINc domain ribonuclease SNO PF01174.19 gi|330834224|ref|YP_004408952.1| - 1.1e-46 159.1 0.1 1.2e-46 159.0 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|330834224|ref|YP_004408952.1| - 5.4e-12 45.7 0.2 7.4e-12 45.3 0.2 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|330834224|ref|YP_004408952.1| - 3.9e-09 36.5 0.0 4.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|330834224|ref|YP_004408952.1| - 4.2e-06 26.7 0.1 7.8e-06 25.8 0.1 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|330834224|ref|YP_004408952.1| - 0.0033 17.3 0.1 0.0051 16.6 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|330834225|ref|YP_004408953.1| - 6.7e-100 333.1 2.3 8.8e-100 332.7 2.3 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|330834225|ref|YP_004408953.1| - 7.4e-07 28.7 1.1 8.2e-06 25.3 0.0 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|330834225|ref|YP_004408953.1| - 0.004 16.6 0.7 0.055 12.9 0.1 2.7 2 2 1 3 3 3 1 Histidine biosynthesis protein IGPS PF00218.21 gi|330834225|ref|YP_004408953.1| - 0.007 15.6 0.0 0.93 8.6 0.0 2.4 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase OMPdecase PF00215.24 gi|330834225|ref|YP_004408953.1| - 0.0084 15.7 0.1 2.8 7.5 0.0 2.5 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family NanE PF04131.14 gi|330834225|ref|YP_004408953.1| - 0.018 14.2 0.3 0.62 9.2 0.0 2.6 2 1 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|330834225|ref|YP_004408953.1| - 0.026 13.9 0.3 0.46 9.8 0.0 2.3 2 1 0 2 2 2 0 Nitronate monooxygenase TetR_C_27 PF17935.1 gi|330834225|ref|YP_004408953.1| - 0.037 14.1 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Dus PF01207.17 gi|330834225|ref|YP_004408953.1| - 0.042 12.9 0.3 1.4 7.9 0.0 2.4 2 1 0 2 2 2 0 Dihydrouridine synthase (Dus) Peptidase_S66C PF17676.1 gi|330834225|ref|YP_004408953.1| - 0.1 13.1 0.0 0.31 11.6 0.0 1.8 2 0 0 2 2 2 0 LD-carboxypeptidase C-terminal domain Ribosomal_S26e PF01283.19 gi|330834226|ref|YP_004408954.1| - 4e-23 81.9 2.2 4.6e-23 81.7 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S26e Lar_restr_allev PF14354.6 gi|330834226|ref|YP_004408954.1| - 0.0028 18.0 2.3 0.2 12.1 2.3 2.1 1 1 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.7 gi|330834226|ref|YP_004408954.1| - 0.13 12.3 0.3 0.13 12.3 0.3 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|330834226|ref|YP_004408954.1| - 0.85 9.6 5.0 0.83 9.7 0.2 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Auto_anti-p27 PF06677.12 gi|330834226|ref|YP_004408954.1| - 1.8 8.8 6.4 3.8 7.8 0.6 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) tRNA-synt_2b PF00587.25 gi|330834227|ref|YP_004408955.1| - 4.9e-24 85.3 0.0 8.4e-24 84.5 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330834227|ref|YP_004408955.1| - 9.7e-19 67.3 0.2 2.2e-18 66.2 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|330834227|ref|YP_004408955.1| - 8.1e-14 51.6 0.0 2.4e-13 50.1 0.0 1.8 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2 PF00152.20 gi|330834227|ref|YP_004408955.1| - 0.071 12.2 2.5 0.068 12.2 0.4 1.9 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) ATP-synt_C PF00137.21 gi|330834228|ref|YP_004408956.1| - 5.7e-14 52.2 20.1 8.7e-14 51.6 20.1 1.3 1 0 0 1 1 1 1 ATP synthase subunit C Nitrate_red_gam PF02665.14 gi|330834228|ref|YP_004408956.1| - 0.31 10.5 4.4 0.27 10.8 3.4 1.4 1 1 0 1 1 1 0 Nitrate reductase gamma subunit ATP-synt_E_2 PF08112.11 gi|330834229|ref|YP_004408957.1| - 1.3e-05 25.3 4.4 1.4e-05 25.3 4.4 1.0 1 0 0 1 1 1 1 ATP synthase epsilon subunit DUF4558 PF15104.6 gi|330834229|ref|YP_004408957.1| - 0.022 14.8 0.4 0.024 14.7 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4558) ATP-synt_D PF01813.17 gi|330834230|ref|YP_004408958.1| - 1.8e-41 142.1 5.4 2.1e-41 142.0 5.4 1.0 1 0 0 1 1 1 1 ATP synthase subunit D MPS2 PF17060.5 gi|330834230|ref|YP_004408958.1| - 0.00017 21.0 0.9 0.00023 20.6 0.9 1.2 1 0 0 1 1 1 1 Monopolar spindle protein 2 GPAT_N PF14829.6 gi|330834230|ref|YP_004408958.1| - 0.0021 18.0 1.7 0.0091 16.0 1.1 2.3 2 1 1 3 3 3 1 Glycerol-3-phosphate acyltransferase N-terminal UBN_AB PF14075.6 gi|330834230|ref|YP_004408958.1| - 0.073 12.8 0.1 0.19 11.4 0.0 1.7 1 1 1 2 2 2 0 Ubinuclein conserved middle domain DUF3829 PF12889.7 gi|330834230|ref|YP_004408958.1| - 0.1 12.0 0.6 0.2 11.1 0.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3829) Phage_int_SAM_6 PF18644.1 gi|330834230|ref|YP_004408958.1| - 0.17 11.9 2.3 0.18 11.9 0.6 1.8 2 0 0 2 2 2 0 Phage integrase SAM-like domain ATP-synt_ab PF00006.25 gi|330834231|ref|YP_004408959.1| - 5.9e-65 218.9 0.0 1.2e-64 217.9 0.0 1.5 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|330834231|ref|YP_004408959.1| - 1.2e-11 45.0 2.9 2.5e-11 43.9 2.4 1.9 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain ATP-synt_ab PF00006.25 gi|330834232|ref|YP_004408960.1| - 1e-84 283.5 0.0 1.4e-84 283.0 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|330834232|ref|YP_004408960.1| - 5.7e-46 155.3 0.6 1.4e-45 154.1 0.4 1.8 2 0 0 2 2 2 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|330834232|ref|YP_004408960.1| - 1.2e-12 48.1 1.3 1.2e-12 48.1 1.3 2.0 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Biotin_lipoyl PF00364.22 gi|330834232|ref|YP_004408960.1| - 0.016 15.0 0.4 0.044 13.6 0.4 1.8 1 0 0 1 1 1 0 Biotin-requiring enzyme AAA_22 PF13401.6 gi|330834232|ref|YP_004408960.1| - 0.023 15.0 0.0 0.052 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|330834232|ref|YP_004408960.1| - 0.072 13.3 0.1 1.1 9.5 0.1 2.5 2 0 0 2 2 2 0 Peptidase family M23 vATP-synt_E PF01991.18 gi|330834233|ref|YP_004408961.1| - 0.0004 19.8 9.4 0.0032 16.9 9.4 2.2 1 1 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DnaB_bind PF10410.9 gi|330834233|ref|YP_004408961.1| - 0.0058 16.8 0.1 0.017 15.3 0.1 1.8 1 0 0 1 1 1 1 DnaB-helicase binding domain of primase FAM25 PF15825.5 gi|330834233|ref|YP_004408961.1| - 0.019 15.3 1.5 0.019 15.3 1.5 2.0 2 1 0 2 2 2 0 FAM25 family YtzH PF14165.6 gi|330834233|ref|YP_004408961.1| - 0.051 14.0 0.1 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 YtzH-like protein OSCP PF00213.18 gi|330834233|ref|YP_004408961.1| - 0.12 12.5 0.2 0.12 12.5 0.2 2.2 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit ATP-synt_F PF01990.17 gi|330834234|ref|YP_004408962.1| - 7.3e-13 48.7 0.4 8.3e-13 48.5 0.4 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit SE PF08491.10 gi|330834234|ref|YP_004408962.1| - 0.082 11.9 0.0 0.092 11.8 0.0 1.0 1 0 0 1 1 1 0 Squalene epoxidase V_ATPase_I PF01496.19 gi|330834235|ref|YP_004408963.1| - 1.2e-34 119.4 6.9 2.9e-23 81.8 0.0 3.3 3 1 0 3 3 3 3 V-type ATPase 116kDa subunit family Recep_L_domain PF01030.24 gi|330834235|ref|YP_004408963.1| - 0.015 15.4 1.4 0.043 13.9 0.3 2.3 2 0 0 2 2 2 0 Receptor L domain tRNA-synt_1g PF09334.11 gi|330834236|ref|YP_004408964.1| - 2.9e-150 500.4 0.0 3.6e-150 500.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|330834236|ref|YP_004408964.1| - 3e-08 32.4 0.7 0.00039 18.8 0.0 3.1 2 1 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330834236|ref|YP_004408964.1| - 9.9e-07 28.8 0.0 1.9e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|330834236|ref|YP_004408964.1| - 0.27 11.3 2.3 0.52 10.4 2.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330834236|ref|YP_004408964.1| - 1.3 8.6 9.0 7.8 6.1 2.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DNA_primase_lrg PF04104.14 gi|330834237|ref|YP_004408965.1| - 1.6e-09 37.6 0.1 0.00042 19.8 0.0 2.2 1 1 1 2 2 2 2 Eukaryotic and archaeal DNA primase, large subunit CDP-OH_P_transf PF01066.21 gi|330834238|ref|YP_004408966.1| - 5.6e-12 46.3 0.6 5.6e-12 46.3 0.6 2.4 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase PrmA PF06325.13 gi|330834240|ref|YP_004408968.1| - 2.1e-11 43.8 0.1 2.7e-11 43.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|330834240|ref|YP_004408968.1| - 2.5e-11 43.6 0.0 3.7e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330834240|ref|YP_004408968.1| - 9e-10 39.1 0.0 1.4e-09 38.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|330834240|ref|YP_004408968.1| - 6.1e-09 36.0 0.1 8.6e-09 35.5 0.1 1.1 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|330834240|ref|YP_004408968.1| - 7.5e-08 32.2 0.4 2.8e-07 30.3 0.4 1.8 1 1 0 1 1 1 1 Histone methylation protein DOT1 CMAS PF02353.20 gi|330834240|ref|YP_004408968.1| - 2e-07 30.6 0.0 2.3e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_12 PF08242.12 gi|330834240|ref|YP_004408968.1| - 5.8e-06 27.0 0.1 9e-06 26.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330834240|ref|YP_004408968.1| - 1.3e-05 24.8 0.1 1.8e-05 24.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|330834240|ref|YP_004408968.1| - 2.4e-05 24.9 0.0 3.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|330834240|ref|YP_004408968.1| - 0.00023 20.7 0.3 0.0016 18.0 0.1 1.9 1 1 1 2 2 2 1 tRNA (adenine(22)-N(1))-methyltransferase Methyltransf_4 PF02390.17 gi|330834240|ref|YP_004408968.1| - 0.00031 20.3 0.0 0.00039 19.9 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Ubie_methyltran PF01209.18 gi|330834240|ref|YP_004408968.1| - 0.00063 19.1 0.1 0.00082 18.8 0.1 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|330834240|ref|YP_004408968.1| - 0.0015 18.4 0.0 0.0023 17.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|330834240|ref|YP_004408968.1| - 0.0031 16.8 0.0 0.0041 16.4 0.0 1.3 1 1 0 1 1 1 1 N-6 DNA Methylase MetW PF07021.12 gi|330834240|ref|YP_004408968.1| - 0.0035 16.9 0.1 0.0042 16.7 0.1 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_2 PF00891.18 gi|330834240|ref|YP_004408968.1| - 0.0056 16.0 0.0 0.0069 15.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain UPF0020 PF01170.18 gi|330834240|ref|YP_004408968.1| - 0.013 15.2 0.3 0.13 11.9 0.3 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.26 gi|330834240|ref|YP_004408968.1| - 0.02 14.9 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Zinc-binding dehydrogenase FtsJ PF01728.19 gi|330834240|ref|YP_004408968.1| - 0.042 14.0 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_15 PF09445.10 gi|330834240|ref|YP_004408968.1| - 0.042 13.4 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_8 PF05148.15 gi|330834240|ref|YP_004408968.1| - 0.06 13.2 0.1 0.071 13.0 0.1 1.3 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_20 PF12147.8 gi|330834240|ref|YP_004408968.1| - 0.06 12.5 0.1 0.076 12.2 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase DUF2286 PF10051.9 gi|330834241|ref|YP_004408969.1| - 2.7e-50 169.7 2.5 3.1e-50 169.5 2.5 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DNA_pol_B PF00136.21 gi|330834242|ref|YP_004408970.1| - 1.9e-53 181.8 2.0 3.1e-53 181.1 2.0 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|330834242|ref|YP_004408970.1| - 5e-26 91.6 0.7 7.5e-26 91.1 0.1 1.6 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|330834242|ref|YP_004408970.1| - 8.9e-06 25.5 0.0 3.4e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_H_2 PF13482.6 gi|330834242|ref|YP_004408970.1| - 2.6e-05 24.3 0.4 9.1e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 RNase_H superfamily DUF2312 PF10073.9 gi|330834242|ref|YP_004408970.1| - 0.0062 16.2 0.3 0.026 14.2 0.3 2.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2312) ACT_6 PF13740.6 gi|330834242|ref|YP_004408970.1| - 0.1 12.6 0.0 0.32 11.0 0.0 1.9 1 0 0 1 1 1 0 ACT domain KELK PF15796.5 gi|330834242|ref|YP_004408970.1| - 3.4 8.2 6.6 8.2 7.0 1.5 2.8 2 0 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF812 PF05667.11 gi|330834243|ref|YP_004408971.1| - 0.0017 17.3 2.0 0.0026 16.7 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Uso1_p115_C PF04871.13 gi|330834243|ref|YP_004408971.1| - 0.023 15.1 1.5 0.036 14.4 1.5 1.2 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region HemX PF04375.14 gi|330834243|ref|YP_004408971.1| - 0.027 13.8 4.2 0.041 13.2 4.2 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4446 PF14584.6 gi|330834243|ref|YP_004408971.1| - 0.033 14.2 0.8 0.058 13.4 0.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) FH2 PF02181.23 gi|330834243|ref|YP_004408971.1| - 0.054 12.6 0.3 0.08 12.0 0.3 1.1 1 0 0 1 1 1 0 Formin Homology 2 Domain TMF_DNA_bd PF12329.8 gi|330834243|ref|YP_004408971.1| - 0.061 13.3 2.4 0.1 12.6 2.4 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding AI-2E_transport PF01594.16 gi|330834243|ref|YP_004408971.1| - 0.082 12.1 6.4 0.18 10.9 5.9 1.8 1 1 1 2 2 2 0 AI-2E family transporter COG2 PF06148.11 gi|330834243|ref|YP_004408971.1| - 0.12 12.4 1.0 0.2 11.7 1.0 1.2 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 SlyX PF04102.12 gi|330834243|ref|YP_004408971.1| - 0.13 12.8 1.1 0.28 11.8 1.1 1.4 1 0 0 1 1 1 0 SlyX APG6_N PF17675.1 gi|330834243|ref|YP_004408971.1| - 0.18 12.3 2.8 0.28 11.7 2.8 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region ADIP PF11559.8 gi|330834243|ref|YP_004408971.1| - 0.25 11.4 3.5 0.4 10.8 3.5 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Lectin_N PF03954.14 gi|330834243|ref|YP_004408971.1| - 0.25 11.1 3.8 0.46 10.2 3.8 1.3 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain PspA_IM30 PF04012.12 gi|330834243|ref|YP_004408971.1| - 0.38 10.3 2.8 0.58 9.7 2.8 1.1 1 0 0 1 1 1 0 PspA/IM30 family SMP_2 PF10144.9 gi|330834243|ref|YP_004408971.1| - 0.7 9.5 8.4 3.6 7.2 6.1 2.1 2 0 0 2 2 2 0 Bacterial virulence factor haemolysin APG17 PF04108.12 gi|330834243|ref|YP_004408971.1| - 1.6 7.7 6.2 2.5 7.1 6.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg17 ALIX_LYPXL_bnd PF13949.6 gi|330834243|ref|YP_004408971.1| - 1.9 7.7 8.2 3 7.1 8.2 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV LPP PF04728.13 gi|330834243|ref|YP_004408971.1| - 3.8 8.0 9.4 3.6 8.1 3.1 2.7 1 1 1 2 2 2 0 Lipoprotein leucine-zipper Inos-1-P_synth PF01658.17 gi|330834244|ref|YP_004408972.1| - 1e-19 70.7 0.1 2e-19 69.8 0.1 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|330834244|ref|YP_004408972.1| - 0.005 16.3 0.0 0.021 14.2 0.0 2.0 2 1 1 3 3 3 1 Myo-inositol-1-phosphate synthase Proton_antipo_M PF00361.20 gi|330834245|ref|YP_004408973.1| - 1.3e-39 136.2 28.7 2.2e-39 135.4 28.7 1.3 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|330834246|ref|YP_004408974.1| - 2.3e-81 273.2 83.8 3.7e-51 174.1 27.4 4.9 4 1 0 4 4 4 2 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|330834246|ref|YP_004408974.1| - 7.9e-05 22.7 10.3 0.00017 21.6 5.2 5.2 5 0 0 5 5 5 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|330834247|ref|YP_004408975.1| - 7.2e-13 48.1 9.5 9.1e-13 47.8 9.5 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q3 PF00499.20 gi|330834248|ref|YP_004408976.1| - 9.4e-18 64.3 15.8 1.1e-17 64.1 15.8 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Rad21_Rec8 PF04824.16 gi|330834248|ref|YP_004408976.1| - 1.3 8.3 4.0 0.57 9.5 0.2 2.2 3 0 0 3 3 3 0 Conserved region of Rad21 / Rec8 like protein Fer4 PF00037.27 gi|330834249|ref|YP_004408977.1| - 2.7e-13 49.1 13.4 8.7e-07 28.5 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834249|ref|YP_004408977.1| - 7.2e-10 38.9 10.3 1.5e-09 37.9 10.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330834249|ref|YP_004408977.1| - 1.1e-09 38.7 9.1 2e-09 37.9 9.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330834249|ref|YP_004408977.1| - 8e-09 36.3 6.7 0.00041 21.2 1.1 2.6 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|330834249|ref|YP_004408977.1| - 5.9e-08 32.7 9.3 1.6e-07 31.4 9.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834249|ref|YP_004408977.1| - 6.7e-08 32.6 8.3 1e-07 32.0 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834249|ref|YP_004408977.1| - 3e-06 27.0 15.8 0.004 17.2 5.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330834249|ref|YP_004408977.1| - 5.4e-05 23.0 11.0 0.0016 18.4 1.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330834249|ref|YP_004408977.1| - 6.3e-05 23.2 9.5 0.058 13.9 1.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330834249|ref|YP_004408977.1| - 0.00082 19.9 8.0 0.049 14.2 1.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330834249|ref|YP_004408977.1| - 0.0054 17.2 9.3 0.38 11.2 0.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330834249|ref|YP_004408977.1| - 0.0088 16.8 5.8 0.61 10.9 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|330834249|ref|YP_004408977.1| - 0.017 16.0 17.7 0.43 11.6 4.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330834249|ref|YP_004408977.1| - 0.03 14.9 10.5 0.087 13.4 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|330834249|ref|YP_004408977.1| - 0.11 12.7 11.4 0.16 12.1 1.3 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|330834249|ref|YP_004408977.1| - 1.2 9.3 4.1 3.5 7.8 4.3 1.7 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_22 PF17179.4 gi|330834249|ref|YP_004408977.1| - 2.9 8.8 12.1 4.7 8.1 3.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|330834250|ref|YP_004408978.1| - 5.1e-77 259.1 21.2 5.9e-77 258.9 21.2 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Cm_res_leader PF08077.11 gi|330834250|ref|YP_004408978.1| - 0.22 11.7 0.7 17 6.0 0.1 2.9 2 0 0 2 2 2 0 Chloramphenicol resistance gene leader peptide Complex1_49kDa PF00346.19 gi|330834251|ref|YP_004408979.1| - 8.2e-93 310.4 0.0 1.1e-92 310.0 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|330834252|ref|YP_004408980.1| - 1.6e-33 115.9 0.0 2.2e-33 115.5 0.0 1.2 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q4 PF00507.19 gi|330834253|ref|YP_004408981.1| - 3.2e-07 30.4 0.9 3.2e-07 30.4 0.9 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Thy1 PF02511.15 gi|330834254|ref|YP_004408982.1| - 1.3e-60 204.5 0.1 1.7e-60 204.1 0.1 1.2 1 0 0 1 1 1 1 Thymidylate synthase complementing protein DUF2175 PF09943.9 gi|330834255|ref|YP_004408983.1| - 6.2e-32 109.8 4.8 7e-32 109.6 4.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Vps39_2 PF10367.9 gi|330834255|ref|YP_004408983.1| - 0.00093 19.6 1.3 0.014 15.8 0.1 2.2 2 0 0 2 2 2 1 Vacuolar sorting protein 39 domain 2 Ca_bind_SSO6904 PF18249.1 gi|330834255|ref|YP_004408983.1| - 0.065 13.6 1.5 0.47 10.8 1.1 2.0 1 1 1 2 2 2 0 Calcium binding protein SSO6904 DUF4055 PF13264.6 gi|330834255|ref|YP_004408983.1| - 0.093 12.9 0.3 0.12 12.6 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4055) PHD PF00628.29 gi|330834255|ref|YP_004408983.1| - 0.17 11.8 1.9 1.3 9.0 0.6 2.2 2 0 0 2 2 2 0 PHD-finger EMP24_GP25L PF01105.24 gi|330834255|ref|YP_004408983.1| - 0.92 9.4 5.1 2.3 8.1 1.0 1.8 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Spore_YhaL PF14147.6 gi|330834256|ref|YP_004408984.1| - 0.00036 20.2 0.2 0.00085 19.0 0.2 1.6 1 0 0 1 1 1 1 Sporulation protein YhaL DUF364 PF04016.12 gi|330834257|ref|YP_004408985.1| - 7.3e-25 87.3 0.0 9.9e-25 86.8 0.0 1.1 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|330834257|ref|YP_004408985.1| - 4.3e-13 49.3 0.0 7.7e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Putative heavy-metal chelation NTP_transferase PF00483.23 gi|330834258|ref|YP_004408986.1| - 8.3e-35 120.5 0.0 1.1e-34 120.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330834258|ref|YP_004408986.1| - 3.7e-11 43.7 0.0 7.7e-11 42.6 0.0 1.5 2 0 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|330834258|ref|YP_004408986.1| - 2.2e-09 36.7 4.4 0.00074 19.1 1.7 3.6 1 1 2 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|330834258|ref|YP_004408986.1| - 0.0012 17.9 0.0 0.0036 16.3 0.0 1.7 2 1 0 2 2 2 1 L-fucokinase Sod_Fe_C PF02777.18 gi|330834259|ref|YP_004408987.1| - 5.7e-31 106.7 1.3 5.7e-31 106.7 1.3 1.5 2 0 0 2 2 2 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|330834259|ref|YP_004408987.1| - 3.3e-27 94.8 0.1 3.3e-27 94.8 0.1 2.2 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Stk19 PF10494.9 gi|330834260|ref|YP_004408988.1| - 0.14 11.8 0.2 0.26 10.9 0.2 1.3 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 MukF_M PF17192.4 gi|330834260|ref|YP_004408988.1| - 0.4 10.4 4.8 0.1 12.4 0.5 2.1 3 0 0 3 3 3 0 MukF middle domain ApoLp-III PF07464.11 gi|330834260|ref|YP_004408988.1| - 0.59 10.2 3.5 2 8.5 0.4 2.4 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) TusA PF01206.17 gi|330834261|ref|YP_004408989.1| - 0.00017 21.3 0.0 0.00023 20.9 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|330834261|ref|YP_004408989.1| - 0.017 15.0 0.0 0.02 14.8 0.0 1.4 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) GXGXG PF01493.19 gi|330834262|ref|YP_004408990.1| - 3e-22 79.2 9.9 5.3e-22 78.3 9.9 1.4 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|330834262|ref|YP_004408990.1| - 1e-06 29.0 0.0 1.4e-05 25.3 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330834262|ref|YP_004408990.1| - 0.086 12.8 0.0 1 9.3 0.0 2.2 1 1 0 1 1 1 0 Glutamine amidotransferase domain DRTGG PF07085.12 gi|330834262|ref|YP_004408990.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 DRTGG domain Glu_synthase PF01645.17 gi|330834263|ref|YP_004408991.1| - 1.4e-100 337.0 0.2 5.2e-95 318.7 0.1 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|330834263|ref|YP_004408991.1| - 2.7e-20 73.0 0.0 1e-06 28.5 0.0 3.1 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|330834263|ref|YP_004408991.1| - 4e-07 29.4 7.2 0.00055 19.1 4.1 3.1 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|330834263|ref|YP_004408991.1| - 0.0044 16.1 7.4 0.011 14.8 4.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain Hexapep PF00132.24 gi|330834263|ref|YP_004408991.1| - 0.047 13.4 0.8 11 6.0 0.8 2.9 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) NanE PF04131.14 gi|330834263|ref|YP_004408991.1| - 0.079 12.1 0.1 0.29 10.3 0.1 1.8 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|330834263|ref|YP_004408991.1| - 0.97 8.7 6.0 2.4 7.5 5.9 1.5 1 1 0 1 1 1 0 Nitronate monooxygenase Baculo_DNA_bind PF04786.12 gi|330834265|ref|YP_004408993.1| - 0.04 13.3 0.0 0.099 12.0 0.0 1.6 2 0 0 2 2 2 0 ssDNA binding protein LPG_synthase_TM PF03706.13 gi|330834266|ref|YP_004408994.1| - 2.9e-11 43.5 16.0 4.1e-11 43.0 16.0 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region ThiF PF00899.21 gi|330834267|ref|YP_004408995.1| - 3.7e-53 180.4 0.2 4.4e-53 180.1 0.2 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|330834267|ref|YP_004408995.1| - 4.2e-05 23.8 0.8 0.00023 21.4 0.8 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|330834267|ref|YP_004408995.1| - 0.035 14.4 0.1 0.068 13.4 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Transketolase_N PF00456.21 gi|330834268|ref|YP_004408996.1| - 5.8e-30 104.4 0.0 1.5e-29 103.1 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.6 gi|330834268|ref|YP_004408996.1| - 2.5e-09 36.8 0.0 6.5e-07 28.8 0.1 2.2 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|330834268|ref|YP_004408996.1| - 4.9e-08 32.9 0.6 5.9e-07 29.4 0.6 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|330834268|ref|YP_004408996.1| - 4.8e-05 22.3 0.0 6.3e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 XFP N-terminal domain E1_dh PF00676.20 gi|330834268|ref|YP_004408996.1| - 8.1e-05 21.7 0.0 0.00016 20.8 0.0 1.4 1 0 0 1 1 1 1 Dehydrogenase E1 component ArAE_2 PF10334.9 gi|330834268|ref|YP_004408996.1| - 0.025 14.4 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Aromatic acid exporter family member 2 Transket_pyr PF02779.24 gi|330834269|ref|YP_004408997.1| - 6.3e-37 127.0 0.0 1e-36 126.3 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|330834269|ref|YP_004408997.1| - 5.2e-30 103.9 0.1 9.3e-30 103.1 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|330834269|ref|YP_004408997.1| - 0.0034 17.7 0.1 0.0063 16.8 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II DFP PF04127.15 gi|330834269|ref|YP_004408997.1| - 0.07 13.0 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Peptidase_M8 PF01457.16 gi|330834269|ref|YP_004408997.1| - 0.1 11.3 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Leishmanolysin PDH PF02153.17 gi|330834270|ref|YP_004408998.1| - 6.6e-19 67.9 0.0 1.2e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|330834270|ref|YP_004408998.1| - 2.8e-16 59.6 0.3 7.9e-16 58.2 0.3 1.8 1 0 0 1 1 1 1 Chorismate mutase type II F420_oxidored PF03807.17 gi|330834270|ref|YP_004408998.1| - 9.9e-10 38.9 0.0 2.7e-09 37.5 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|330834270|ref|YP_004408998.1| - 8.5e-07 29.1 0.0 2.4e-06 27.6 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|330834270|ref|YP_004408998.1| - 3.3e-05 24.1 0.0 6.3e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|330834270|ref|YP_004408998.1| - 0.00012 21.7 0.0 0.0002 21.0 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|330834270|ref|YP_004408998.1| - 0.0009 18.6 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|330834270|ref|YP_004408998.1| - 0.019 14.9 0.0 0.15 11.9 0.0 2.3 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TraC PF07820.12 gi|330834270|ref|YP_004408998.1| - 0.059 13.7 0.7 1.4 9.3 0.0 2.5 2 0 0 2 2 2 0 TraC-like protein Sacchrp_dh_NADP PF03435.18 gi|330834270|ref|YP_004408998.1| - 0.079 13.2 0.0 0.23 11.7 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain MREG PF15812.5 gi|330834270|ref|YP_004408998.1| - 0.11 12.8 0.1 0.27 11.5 0.1 1.7 1 0 0 1 1 1 0 Melanoregulin DAHP_synth_1 PF00793.20 gi|330834271|ref|YP_004408999.1| - 2.4e-68 230.0 0.0 3e-68 229.7 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|330834271|ref|YP_004408999.1| - 1.6e-07 31.1 0.0 2.7e-05 23.7 0.0 2.3 2 1 0 2 2 2 2 NeuB family Dicty_CAD PF05720.12 gi|330834271|ref|YP_004408999.1| - 0.042 13.8 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Cell-cell adhesion domain DHQ_synthase PF01761.20 gi|330834272|ref|YP_004409000.1| - 7.3e-93 310.5 0.1 8.8e-93 310.2 0.1 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|330834272|ref|YP_004409000.1| - 5.8e-06 26.2 0.0 1.1e-05 25.3 0.0 1.4 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|330834272|ref|YP_004409000.1| - 0.0011 17.9 0.1 0.2 10.4 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Shikimate_DH PF01488.20 gi|330834273|ref|YP_004409001.1| - 6.5e-07 29.5 0.0 1e-06 28.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|330834273|ref|YP_004409001.1| - 0.00012 21.8 0.0 0.00039 20.1 0.0 1.9 2 0 0 2 2 2 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_dh_N PF08501.11 gi|330834273|ref|YP_004409001.1| - 0.0017 18.6 0.0 0.0045 17.2 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain adh_short PF00106.25 gi|330834273|ref|YP_004409001.1| - 0.0029 17.1 0.1 0.0046 16.4 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|330834273|ref|YP_004409001.1| - 0.016 15.5 0.0 0.026 14.8 0.0 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_2 PF07992.14 gi|330834273|ref|YP_004409001.1| - 0.057 12.6 0.2 0.094 11.9 0.2 1.3 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SGT1 PF07093.11 gi|330834273|ref|YP_004409001.1| - 0.079 11.4 0.0 0.1 11.0 0.0 1.1 1 0 0 1 1 1 0 SGT1 protein FAD_binding_2 PF00890.24 gi|330834273|ref|YP_004409001.1| - 0.1 11.6 0.3 0.14 11.2 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Chorismate_synt PF01264.21 gi|330834274|ref|YP_004409002.1| - 7.6e-122 406.1 0.0 8.8e-122 405.9 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.26 gi|330834275|ref|YP_004409003.1| - 2.9e-10 40.2 0.5 7.3e-10 38.9 0.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330834275|ref|YP_004409003.1| - 0.00076 19.8 0.1 0.0017 18.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal EPSP_synthase PF00275.20 gi|330834276|ref|YP_004409004.1| - 3.8e-55 187.3 0.0 1e-48 166.1 0.0 2.0 1 1 1 2 2 2 2 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHquinase_I PF01487.15 gi|330834277|ref|YP_004409005.1| - 8.2e-12 45.9 0.0 3.2e-11 43.9 0.0 1.7 1 1 0 1 1 1 1 Type I 3-dehydroquinase Rieske PF00355.26 gi|330834278|ref|YP_004409006.1| - 1.1e-12 47.7 0.0 1.3e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|330834278|ref|YP_004409006.1| - 3.2e-06 27.0 0.0 4.4e-06 26.6 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain NapD PF03927.13 gi|330834279|ref|YP_004409007.1| - 0.017 15.2 0.2 0.023 14.7 0.2 1.2 1 0 0 1 1 1 0 NapD protein DUF3400 PF11880.8 gi|330834279|ref|YP_004409007.1| - 0.13 11.8 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) Helicase_C_2 PF13307.6 gi|330834280|ref|YP_004409008.1| - 4.9e-26 91.9 0.1 1.9e-25 90.0 0.0 1.9 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|330834280|ref|YP_004409008.1| - 3.9e-17 62.4 0.1 7.1e-17 61.6 0.1 1.4 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.15 gi|330834280|ref|YP_004409008.1| - 4.7e-09 36.5 0.1 9.9e-08 32.2 0.0 2.8 2 1 1 3 3 3 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330834280|ref|YP_004409008.1| - 4e-05 23.4 0.2 0.012 15.4 0.0 3.0 4 0 0 4 4 4 2 DEAD/DEAH box helicase PhoH PF02562.16 gi|330834280|ref|YP_004409008.1| - 0.0024 17.4 0.4 0.12 11.8 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|330834280|ref|YP_004409008.1| - 0.045 14.0 0.3 0.33 11.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain Thioredoxin_3 PF13192.6 gi|330834281|ref|YP_004409009.1| - 1.2e-09 38.1 0.0 2.3e-09 37.2 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|330834281|ref|YP_004409009.1| - 0.00092 19.4 0.0 0.0019 18.4 0.0 1.6 1 0 0 1 1 1 1 Glutaredoxin Ribosomal_L16 PF00252.18 gi|330834282|ref|YP_004409010.1| - 1.5e-31 109.2 0.2 1.7e-31 109.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RNA_pol_Rpa2_4 PF06883.12 gi|330834282|ref|YP_004409010.1| - 0.06 13.4 0.1 0.15 12.1 0.1 1.8 1 0 0 1 1 1 0 RNA polymerase I, Rpa2 specific domain Diphthamide_syn PF01866.17 gi|330834283|ref|YP_004409011.1| - 3.5e-76 256.6 0.0 4e-76 256.3 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Abhydrolase_5 PF12695.7 gi|330834283|ref|YP_004409011.1| - 0.036 13.8 0.0 0.084 12.6 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase family ECR1_N PF14382.6 gi|330834284|ref|YP_004409012.1| - 1.9e-11 43.5 0.3 1.3e-10 40.8 0.2 2.2 2 0 0 2 2 2 1 Exosome complex exonuclease RRP4 N-terminal region A2L_zn_ribbon PF08792.10 gi|330834284|ref|YP_004409012.1| - 0.0014 18.3 0.7 0.0024 17.5 0.7 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain zf-NADH-PPase PF09297.11 gi|330834284|ref|YP_004409012.1| - 0.0036 16.9 0.1 0.0066 16.1 0.1 1.4 1 0 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.7 gi|330834284|ref|YP_004409012.1| - 0.012 15.6 0.4 0.02 14.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330834284|ref|YP_004409012.1| - 0.016 14.6 3.3 1.1 8.8 3.0 2.3 1 1 1 2 2 2 0 zinc-ribbon domain S1 PF00575.23 gi|330834284|ref|YP_004409012.1| - 0.039 14.3 0.6 0.29 11.5 0.6 2.1 1 1 0 1 1 1 0 S1 RNA binding domain RecR PF02132.15 gi|330834284|ref|YP_004409012.1| - 0.059 13.0 2.2 0.18 11.4 2.2 1.8 1 1 0 1 1 1 0 RecR protein OrfB_Zn_ribbon PF07282.11 gi|330834284|ref|YP_004409012.1| - 0.064 13.2 0.7 0.11 12.4 0.7 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF2318 PF10080.9 gi|330834284|ref|YP_004409012.1| - 0.067 13.3 0.1 0.12 12.6 0.1 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) HypA PF01155.19 gi|330834284|ref|YP_004409012.1| - 0.08 13.0 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RuvA_N PF01330.21 gi|330834284|ref|YP_004409012.1| - 0.087 12.9 0.1 0.18 11.9 0.1 1.5 1 0 0 1 1 1 0 RuvA N terminal domain RNA_POL_M_15KD PF02150.16 gi|330834284|ref|YP_004409012.1| - 0.1 12.5 1.3 0.2 11.5 1.3 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF3725 PF12523.8 gi|330834284|ref|YP_004409012.1| - 0.17 12.2 0.2 1.8 8.9 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3725) Auto_anti-p27 PF06677.12 gi|330834284|ref|YP_004409012.1| - 0.23 11.6 1.5 0.39 10.9 1.5 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_L_2 PF13656.6 gi|330834285|ref|YP_004409013.1| - 1.1e-21 76.4 0.0 1.3e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|330834285|ref|YP_004409013.1| - 1.1e-11 44.0 0.0 1.5e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|330834287|ref|YP_004409015.1| - 1.5e-22 79.1 13.3 8.7e-21 73.5 2.0 3.2 3 0 0 3 3 3 2 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|330834287|ref|YP_004409015.1| - 5.1e-09 35.9 2.6 5.1e-09 35.9 2.6 2.8 2 1 0 2 2 2 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|330834287|ref|YP_004409015.1| - 2.9e-08 33.5 7.6 0.00098 19.1 1.6 2.3 2 0 0 2 2 2 2 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|330834287|ref|YP_004409015.1| - 0.00039 20.5 7.0 0.0019 18.3 1.1 2.3 1 1 1 2 2 2 1 Probable metal-binding protein (DUF2387) eIF-5_eIF-2B PF01873.17 gi|330834287|ref|YP_004409015.1| - 0.001 18.9 5.6 0.29 11.0 0.2 2.3 2 0 0 2 2 2 2 Domain found in IF2B/IF5 DZR PF12773.7 gi|330834287|ref|YP_004409015.1| - 0.0012 18.8 7.9 0.031 14.3 1.0 2.7 2 1 0 2 2 2 2 Double zinc ribbon zf-TFIIB PF13453.6 gi|330834287|ref|YP_004409015.1| - 0.0013 18.0 1.1 0.0013 18.0 1.1 2.8 2 1 0 2 2 2 1 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|330834287|ref|YP_004409015.1| - 0.024 14.3 17.7 5.4 6.9 1.0 4.2 4 0 0 4 4 4 0 zinc-ribbon domain IBR PF01485.21 gi|330834287|ref|YP_004409015.1| - 0.031 14.5 8.7 0.42 10.9 2.6 3.0 3 0 0 3 3 3 0 IBR domain, a half RING-finger domain Zn-ribbon_8 PF09723.10 gi|330834287|ref|YP_004409015.1| - 0.035 14.2 13.1 6.7 6.9 0.5 4.2 3 1 2 5 5 4 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|330834287|ref|YP_004409015.1| - 0.045 13.7 7.8 0.72 9.8 0.8 2.6 2 1 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|330834287|ref|YP_004409015.1| - 0.073 12.5 13.6 0.56 9.7 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain Med16 PF11635.8 gi|330834287|ref|YP_004409015.1| - 0.073 11.0 0.1 0.082 10.8 0.1 1.1 1 0 0 1 1 1 0 Mediator complex subunit 16 Desulfoferrod_N PF06397.12 gi|330834287|ref|YP_004409015.1| - 0.1 12.3 9.9 1.4 8.6 0.1 3.2 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zinc_ribbon_4 PF13717.6 gi|330834287|ref|YP_004409015.1| - 0.11 12.4 18.6 0.46 10.5 0.3 4.2 3 2 0 3 3 3 0 zinc-ribbon domain TackOD1 PF18551.1 gi|330834287|ref|YP_004409015.1| - 0.12 12.0 5.6 0.34 10.6 0.4 2.6 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 zinc_ribbon_13 PF09855.9 gi|330834287|ref|YP_004409015.1| - 0.28 11.4 7.3 4 7.7 0.0 3.8 4 0 0 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf_UBZ PF18439.1 gi|330834287|ref|YP_004409015.1| - 0.48 10.1 13.9 4.3 7.0 0.2 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|330834287|ref|YP_004409015.1| - 0.54 10.2 12.8 2.8 7.9 0.2 3.8 4 0 0 4 4 4 0 SprT-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|330834287|ref|YP_004409015.1| - 0.57 10.2 7.0 0.43 10.6 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons Nudix_N_2 PF14803.6 gi|330834287|ref|YP_004409015.1| - 0.61 10.1 13.7 9.5 6.2 2.5 4.1 2 2 1 3 3 3 0 Nudix N-terminal zinc_ribbon_10 PF10058.9 gi|330834287|ref|YP_004409015.1| - 0.73 9.6 12.3 0.98 9.2 2.4 3.2 2 2 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Rubredoxin_2 PF18073.1 gi|330834287|ref|YP_004409015.1| - 0.85 9.4 15.2 4.6 7.1 0.7 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain Ribosomal_S27e PF01667.17 gi|330834287|ref|YP_004409015.1| - 1.7 8.4 9.1 3.5 7.4 0.8 3.4 2 2 0 2 2 2 0 Ribosomal protein S27 Baculo_LEF5_C PF11792.8 gi|330834287|ref|YP_004409015.1| - 1.7 8.4 0.0 1.7 8.4 0.0 3.8 5 0 0 5 5 4 0 Baculoviridae late expression factor 5 C-terminal domain RNHCP PF12647.7 gi|330834287|ref|YP_004409015.1| - 2.2 8.3 7.7 1.3 9.1 0.4 2.9 2 1 1 3 3 3 0 RNHCP domain zf-MYND PF01753.18 gi|330834287|ref|YP_004409015.1| - 3.4 7.8 9.4 0.61 10.2 0.6 2.7 2 1 0 2 2 2 0 MYND finger HalOD2 PF18547.1 gi|330834287|ref|YP_004409015.1| - 3.7 7.5 10.3 2.9 7.9 0.5 3.4 3 1 0 3 3 3 0 Halobacterial output domain 2 TF_Zn_Ribbon PF08271.12 gi|330834287|ref|YP_004409015.1| - 3.9 7.1 15.5 1.7 8.2 1.6 4.0 3 2 0 3 3 3 0 TFIIB zinc-binding DUF35_N PF12172.8 gi|330834287|ref|YP_004409015.1| - 4 7.4 10.2 17 5.4 0.2 4.0 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-Mss51 PF13824.6 gi|330834287|ref|YP_004409015.1| - 5.6 7.1 10.6 1.2 9.3 1.0 2.8 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|330834287|ref|YP_004409015.1| - 7.4 6.5 16.6 14 5.6 0.7 4.0 4 0 0 4 4 4 0 HIT zinc finger A2L_zn_ribbon PF08792.10 gi|330834287|ref|YP_004409015.1| - 8 6.3 14.0 5.2 6.9 0.0 4.1 4 0 0 4 4 4 0 A2L zinc ribbon domain NTP_transferase PF00483.23 gi|330834288|ref|YP_004409016.1| - 2.3e-29 102.7 0.0 2.9e-28 99.1 0.0 1.9 1 1 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330834288|ref|YP_004409016.1| - 2.3e-10 41.1 0.0 2.7e-10 40.8 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|330834288|ref|YP_004409016.1| - 0.00051 19.8 0.0 0.0059 16.4 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|330834288|ref|YP_004409016.1| - 0.041 13.8 1.0 7 6.6 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4224) bact-PGI_C PF10432.9 gi|330834289|ref|YP_004409017.1| - 2e-19 70.1 0.0 1.7e-18 67.1 0.0 2.1 1 1 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|330834289|ref|YP_004409017.1| - 0.00021 21.2 0.2 0.0026 17.6 0.0 2.5 2 1 0 3 3 3 1 SIS domain SIS_2 PF13580.6 gi|330834289|ref|YP_004409017.1| - 0.0084 16.1 0.6 0.037 14.0 0.0 2.0 1 1 1 2 2 2 1 SIS domain Glycos_transf_2 PF00535.26 gi|330834290|ref|YP_004409018.1| - 3.2e-12 46.6 0.1 4.4e-12 46.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|330834290|ref|YP_004409018.1| - 8.8e-05 22.1 0.1 0.0092 15.5 0.1 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|330834290|ref|YP_004409018.1| - 0.00013 22.0 0.1 0.00027 20.9 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|330834290|ref|YP_004409018.1| - 0.0019 17.7 0.3 0.017 14.6 0.2 2.1 1 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|330834290|ref|YP_004409018.1| - 0.011 15.7 0.7 1.6 8.6 0.1 2.2 2 0 0 2 2 2 0 Glycosyl transferase family group 2 Mg296 PF09644.10 gi|330834290|ref|YP_004409018.1| - 0.093 12.9 0.7 0.15 12.2 0.7 1.3 1 0 0 1 1 1 0 Mg296 protein Glycos_transf_1 PF00534.20 gi|330834291|ref|YP_004409019.1| - 3e-12 46.4 0.0 6e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330834291|ref|YP_004409019.1| - 0.0004 20.8 0.0 0.00082 19.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330834291|ref|YP_004409019.1| - 0.00082 19.4 0.1 0.002 18.2 0.1 1.7 2 1 0 2 2 2 1 Glycosyltransferase Family 4 CarboxypepD_reg PF13620.6 gi|330834292|ref|YP_004409020.1| - 3.7e-09 36.7 31.0 6.5e-08 32.7 6.0 4.3 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain MG2 PF01835.19 gi|330834292|ref|YP_004409020.1| - 1.8e-05 25.1 1.7 0.0021 18.4 0.5 3.2 1 1 1 2 2 2 1 MG2 domain TMF_DNA_bd PF12329.8 gi|330834292|ref|YP_004409020.1| - 5.1e-05 23.2 6.3 0.0029 17.6 0.4 1.7 1 1 1 2 2 2 2 TATA element modulatory factor 1 DNA binding ATG16 PF08614.11 gi|330834292|ref|YP_004409020.1| - 0.00019 21.7 0.1 0.0003 21.1 0.1 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) ADIP PF11559.8 gi|330834292|ref|YP_004409020.1| - 0.00026 21.1 0.0 0.0004 20.5 0.0 1.2 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding COG5 PF10392.9 gi|330834292|ref|YP_004409020.1| - 0.00095 19.3 6.2 0.021 15.0 0.5 2.2 1 1 1 2 2 2 1 Golgi transport complex subunit 5 DUF948 PF06103.11 gi|330834292|ref|YP_004409020.1| - 0.0029 17.8 2.0 0.0029 17.8 2.0 2.6 2 0 0 2 2 1 1 Bacterial protein of unknown function (DUF948) FlgD_ig PF13860.6 gi|330834292|ref|YP_004409020.1| - 0.0032 17.3 10.7 0.34 10.8 0.2 4.0 2 1 1 3 3 3 2 FlgD Ig-like domain DUF1664 PF07889.12 gi|330834292|ref|YP_004409020.1| - 0.0053 16.8 0.1 0.0097 15.9 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) DUF4198 PF10670.9 gi|330834292|ref|YP_004409020.1| - 0.0084 16.5 1.4 0.15 12.4 1.4 2.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4198) EMP24_GP25L PF01105.24 gi|330834292|ref|YP_004409020.1| - 0.0085 16.1 2.4 0.12 12.3 1.3 2.3 2 0 0 2 2 2 1 emp24/gp25L/p24 family/GOLD BLOC1_2 PF10046.9 gi|330834292|ref|YP_004409020.1| - 0.011 16.0 1.1 0.053 13.8 0.9 2.0 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|330834292|ref|YP_004409020.1| - 0.012 15.6 1.5 0.021 14.8 1.5 1.3 1 0 0 1 1 1 0 Laminin Domain II YtkA PF13115.6 gi|330834292|ref|YP_004409020.1| - 0.013 16.1 1.2 12 6.6 0.1 3.7 3 2 1 4 4 3 0 YtkA-like Bacillus_HBL PF05791.11 gi|330834292|ref|YP_004409020.1| - 0.015 15.1 0.6 0.028 14.3 0.6 1.4 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) TolA_bind_tri PF16331.5 gi|330834292|ref|YP_004409020.1| - 0.023 14.7 0.1 0.089 12.9 0.1 1.8 1 1 1 2 2 2 0 TolA binding protein trimerisation Big_1 PF02369.16 gi|330834292|ref|YP_004409020.1| - 0.024 14.6 5.5 0.024 14.6 5.5 5.2 4 2 0 4 4 3 0 Bacterial Ig-like domain (group 1) Fib_alpha PF08702.10 gi|330834292|ref|YP_004409020.1| - 0.033 14.4 1.5 0.056 13.6 1.5 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3450 PF11932.8 gi|330834292|ref|YP_004409020.1| - 0.035 13.4 0.1 0.056 12.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) GIT_CC PF16559.5 gi|330834292|ref|YP_004409020.1| - 0.04 13.8 5.2 0.049 13.5 1.2 2.3 1 1 1 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor Spc7 PF08317.11 gi|330834292|ref|YP_004409020.1| - 0.046 12.6 0.0 0.064 12.1 0.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein FlaC_arch PF05377.11 gi|330834292|ref|YP_004409020.1| - 0.046 14.1 1.0 0.79 10.2 0.6 2.4 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) Lebercilin PF15619.6 gi|330834292|ref|YP_004409020.1| - 0.053 13.2 0.0 0.076 12.7 0.0 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Helo_like_N PF17111.5 gi|330834292|ref|YP_004409020.1| - 0.053 12.9 0.5 0.092 12.1 0.5 1.5 1 0 0 1 1 1 0 Fungal N-terminal domain of STAND proteins NPV_P10 PF05531.12 gi|330834292|ref|YP_004409020.1| - 0.058 13.9 5.1 0.34 11.4 2.8 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein HAUS-augmin3 PF14932.6 gi|330834292|ref|YP_004409020.1| - 0.076 12.6 0.1 0.11 12.0 0.1 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 MG4 PF17789.1 gi|330834292|ref|YP_004409020.1| - 0.089 13.0 9.8 0.26 11.5 0.4 3.7 3 1 0 3 3 3 0 Macroglobulin domain MG4 LPP PF04728.13 gi|330834292|ref|YP_004409020.1| - 0.092 13.1 5.7 4.3 7.8 4.2 2.9 1 1 2 3 3 3 0 Lipoprotein leucine-zipper Macoilin PF09726.9 gi|330834292|ref|YP_004409020.1| - 0.12 11.0 0.1 0.15 10.6 0.1 1.1 1 0 0 1 1 1 0 Macoilin family Vps51 PF08700.11 gi|330834292|ref|YP_004409020.1| - 0.12 12.4 1.4 0.73 10.0 0.3 2.2 1 1 2 3 3 3 0 Vps51/Vps67 DivIC PF04977.15 gi|330834292|ref|YP_004409020.1| - 0.17 11.7 0.0 0.52 10.1 0.0 1.8 1 1 0 1 1 1 0 Septum formation initiator Syntaxin-6_N PF09177.11 gi|330834292|ref|YP_004409020.1| - 0.18 12.4 0.7 0.39 11.3 0.7 1.6 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DegS PF05384.11 gi|330834292|ref|YP_004409020.1| - 0.19 11.2 0.1 0.29 10.6 0.1 1.2 1 0 0 1 1 1 0 Sensor protein DegS DUF4795 PF16043.5 gi|330834292|ref|YP_004409020.1| - 0.19 11.3 0.4 0.28 10.8 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) RIFIN PF02009.16 gi|330834292|ref|YP_004409020.1| - 0.2 11.5 4.9 0.31 10.9 4.9 1.2 1 0 0 1 1 1 0 Rifin DUF5082 PF16888.5 gi|330834292|ref|YP_004409020.1| - 0.2 11.9 1.1 0.34 11.2 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) Spc24 PF08286.11 gi|330834292|ref|YP_004409020.1| - 0.22 11.8 2.3 2.3 8.5 0.9 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF4201 PF13870.6 gi|330834292|ref|YP_004409020.1| - 0.23 11.2 0.1 0.34 10.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) IFT57 PF10498.9 gi|330834292|ref|YP_004409020.1| - 0.23 10.4 0.1 0.33 9.9 0.1 1.1 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 PapC_N PF13954.6 gi|330834292|ref|YP_004409020.1| - 0.24 11.4 1.8 0.32 11.0 0.5 1.8 2 1 0 2 2 2 0 PapC N-terminal domain CLZ PF16526.5 gi|330834292|ref|YP_004409020.1| - 0.24 11.8 0.2 1.1 9.6 0.2 1.9 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Snapin_Pallidin PF14712.6 gi|330834292|ref|YP_004409020.1| - 0.31 11.5 1.4 1.5 9.3 0.3 1.9 1 1 0 1 1 1 0 Snapin/Pallidin DASH_Dam1 PF08653.10 gi|330834292|ref|YP_004409020.1| - 0.6 9.9 2.1 7.8 6.4 0.1 2.4 1 1 3 4 4 4 0 DASH complex subunit Dam1 MbeD_MobD PF04899.12 gi|330834292|ref|YP_004409020.1| - 0.81 9.9 2.6 15 5.8 0.4 2.4 1 1 1 2 2 2 0 MbeD/MobD like DASH_Spc19 PF08287.11 gi|330834292|ref|YP_004409020.1| - 9.7 6.1 11.4 3.6 7.5 2.9 2.2 1 1 1 2 2 2 0 Spc19 CARDB PF07705.11 gi|330834293|ref|YP_004409021.1| - 0.00032 20.9 0.7 0.00032 20.9 0.7 6.4 7 3 1 8 8 8 1 CARDB TrpP PF17099.5 gi|330834294|ref|YP_004409022.1| - 0.017 14.9 4.6 0.041 13.6 4.6 1.7 1 0 0 1 1 1 0 Tryptophan transporter TrpP Ribosomal_L44 PF00935.19 gi|330834295|ref|YP_004409023.1| - 1.3e-26 92.8 9.7 1.3e-26 92.8 9.7 1.3 2 0 0 2 2 1 1 Ribosomal protein L44 CpXC PF14353.6 gi|330834295|ref|YP_004409023.1| - 0.0027 17.7 0.4 0.3 11.1 0.1 2.1 2 0 0 2 2 2 1 CpXC protein Zn-ribbon_8 PF09723.10 gi|330834295|ref|YP_004409023.1| - 0.018 15.1 1.0 1.9 8.7 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_13 PF09855.9 gi|330834295|ref|YP_004409023.1| - 0.026 14.7 1.1 0.54 10.5 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zinc_ribbon_4 PF13717.6 gi|330834295|ref|YP_004409023.1| - 0.031 14.2 1.9 4.4 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|330834295|ref|YP_004409023.1| - 0.091 12.5 2.2 1.3 8.8 0.3 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein NOB1_Zn_bind PF08772.11 gi|330834295|ref|YP_004409023.1| - 0.093 12.9 3.6 1.1 9.5 0.2 2.2 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.6 gi|330834295|ref|YP_004409023.1| - 0.1 12.0 3.2 0.81 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|330834295|ref|YP_004409023.1| - 0.12 12.4 2.5 0.4 10.7 2.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon CxC5 PF18718.1 gi|330834295|ref|YP_004409023.1| - 0.12 12.4 6.8 0.17 12.0 1.4 2.1 1 1 1 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases zf-Mss51 PF13824.6 gi|330834295|ref|YP_004409023.1| - 0.16 12.1 4.3 2.2 8.4 5.0 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_2 PF13240.6 gi|330834295|ref|YP_004409023.1| - 0.16 11.7 5.0 2.4 8.0 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|330834295|ref|YP_004409023.1| - 0.18 11.7 2.6 1.8 8.5 0.4 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|330834295|ref|YP_004409023.1| - 0.22 11.5 8.4 6.1 6.9 8.4 2.4 1 1 0 1 1 1 0 SprT-like zinc ribbon domain GFA PF04828.14 gi|330834295|ref|YP_004409023.1| - 0.27 11.6 3.3 4.3 7.7 3.4 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme Zn_Tnp_IS1595 PF12760.7 gi|330834295|ref|YP_004409023.1| - 0.31 11.0 3.3 12 5.9 0.5 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|330834295|ref|YP_004409023.1| - 0.42 10.4 4.6 0.47 10.2 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_L37ae PF01780.19 gi|330834295|ref|YP_004409023.1| - 0.57 10.3 8.9 0.055 13.6 3.8 1.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf_UBZ PF18439.1 gi|330834295|ref|YP_004409023.1| - 0.95 9.1 4.2 5.5 6.7 0.4 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Ribosomal_S27e PF01667.17 gi|330834296|ref|YP_004409024.1| - 5.3e-18 64.5 0.8 5.8e-18 64.4 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|330834296|ref|YP_004409024.1| - 0.013 15.0 0.8 0.016 14.7 0.8 1.1 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|330834296|ref|YP_004409024.1| - 0.015 15.3 0.3 0.018 15.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|330834296|ref|YP_004409024.1| - 0.018 15.0 1.0 0.69 9.9 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|330834296|ref|YP_004409024.1| - 0.018 15.0 1.1 0.83 9.6 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-LSD1 PF06943.12 gi|330834296|ref|YP_004409024.1| - 0.024 14.5 8.5 0.069 13.0 0.9 2.2 2 0 0 2 2 2 0 LSD1 zinc finger DUF35_N PF12172.8 gi|330834296|ref|YP_004409024.1| - 0.026 14.4 1.8 0.22 11.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|330834296|ref|YP_004409024.1| - 0.046 13.8 0.8 0.081 13.1 0.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|330834296|ref|YP_004409024.1| - 0.057 13.1 3.1 0.76 9.5 3.0 2.1 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit PADR1 PF08063.12 gi|330834296|ref|YP_004409024.1| - 0.062 13.1 2.4 0.54 10.1 0.2 2.0 1 1 1 2 2 2 0 PADR1 (NUC008) domain Matrix PF00661.21 gi|330834296|ref|YP_004409024.1| - 0.16 10.7 0.0 0.16 10.7 0.0 1.0 1 0 0 1 1 1 0 Viral matrix protein TFIIS_C PF01096.18 gi|330834296|ref|YP_004409024.1| - 0.16 11.8 3.3 2.3 8.1 0.5 2.3 1 1 2 3 3 3 0 Transcription factor S-II (TFIIS) DNA_ligase_ZBD PF03119.16 gi|330834296|ref|YP_004409024.1| - 0.19 11.7 3.4 0.8 9.8 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.6 gi|330834296|ref|YP_004409024.1| - 0.36 10.6 5.3 3.7 7.4 5.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain EIF_2_alpha PF07541.12 gi|330834297|ref|YP_004409025.1| - 6.1e-18 65.0 0.1 6.1e-18 65.0 0.1 2.0 2 1 1 3 3 3 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|330834297|ref|YP_004409025.1| - 2.4e-11 43.8 0.2 7.4e-11 42.2 0.2 1.9 1 0 0 1 1 1 1 S1 RNA binding domain Paf67 PF10255.9 gi|330834297|ref|YP_004409025.1| - 0.027 13.5 0.3 0.055 12.5 0.2 1.4 1 1 1 2 2 2 0 RNA polymerase I-associated factor PAF67 CPSF73-100_C PF11718.8 gi|330834297|ref|YP_004409025.1| - 0.028 14.0 4.5 0.06 12.9 4.5 1.5 1 1 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term SAVED PF18145.1 gi|330834297|ref|YP_004409025.1| - 0.16 11.8 0.4 0.28 11.0 0.1 1.5 1 1 0 1 1 1 0 SMODS-associated and fused to various effectors sensor domain TINF2_N PF14973.6 gi|330834297|ref|YP_004409025.1| - 0.16 12.3 3.0 0.46 10.8 0.8 2.1 2 0 0 2 2 2 0 TERF1-interacting nuclear factor 2 N-terminus Nop10p PF04135.12 gi|330834298|ref|YP_004409026.1| - 4.4e-21 74.7 2.0 4.6e-21 74.6 2.0 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-NADH-PPase PF09297.11 gi|330834298|ref|YP_004409026.1| - 0.0079 15.8 2.6 0.49 10.1 1.2 2.4 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain NRDD PF13597.6 gi|330834298|ref|YP_004409026.1| - 0.12 11.1 0.1 0.12 11.1 0.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase PolC_DP2 PF03833.13 gi|330834298|ref|YP_004409026.1| - 0.19 9.5 0.0 0.19 9.5 0.0 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OCD_Mu_crystall PF02423.15 gi|330834299|ref|YP_004409027.1| - 3.5e-39 134.6 0.1 4.1e-39 134.4 0.1 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|330834299|ref|YP_004409027.1| - 0.0021 18.2 0.0 0.0034 17.5 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330834299|ref|YP_004409027.1| - 0.0053 16.1 0.0 0.0087 15.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|330834299|ref|YP_004409027.1| - 0.059 14.0 0.0 0.36 11.4 0.0 2.2 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pkinase PF00069.25 gi|330834300|ref|YP_004409028.1| - 2.3e-27 96.1 0.0 3.3e-27 95.5 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|330834300|ref|YP_004409028.1| - 6e-12 45.4 0.0 1.1e-11 44.6 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Herpes_LMP1 PF05297.11 gi|330834300|ref|YP_004409028.1| - 6.4 5.9 9.6 11 5.1 9.6 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DNA_primase_S PF01896.19 gi|330834304|ref|YP_004409032.1| - 8.8e-13 48.7 0.4 1.1e-05 25.6 0.6 2.7 2 1 0 2 2 2 2 DNA primase small subunit PCNA_C PF02747.15 gi|330834305|ref|YP_004409033.1| - 3.7e-13 49.8 0.2 1.2e-10 41.6 0.0 2.6 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|330834305|ref|YP_004409033.1| - 4.5e-07 29.6 0.0 1.1e-06 28.3 0.0 1.7 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.16 gi|330834305|ref|YP_004409033.1| - 9.6e-05 21.6 0.3 0.29 10.2 0.0 2.1 2 0 0 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Hus1 PF04005.12 gi|330834305|ref|YP_004409033.1| - 0.018 14.2 0.0 0.56 9.3 0.0 2.1 1 1 1 2 2 2 0 Hus1-like protein Rad9 PF04139.13 gi|330834305|ref|YP_004409033.1| - 0.034 13.6 0.0 0.098 12.1 0.0 1.8 1 1 0 1 1 1 0 Rad9 DNA_pol3_beta_3 PF02768.15 gi|330834305|ref|YP_004409033.1| - 0.046 13.6 0.1 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 DNA polymerase III beta subunit, C-terminal domain ATP_bind_1 PF03029.17 gi|330834306|ref|YP_004409034.1| - 2.8e-57 194.3 0.0 3.1e-57 194.1 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|330834306|ref|YP_004409034.1| - 0.00047 20.1 0.0 6.4 6.6 0.0 3.6 3 1 0 3 3 3 1 RsgA GTPase AAA_16 PF13191.6 gi|330834306|ref|YP_004409034.1| - 0.001 19.5 0.0 0.0018 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain SRP54 PF00448.22 gi|330834306|ref|YP_004409034.1| - 0.0027 17.4 0.0 0.011 15.3 0.0 1.8 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_7 PF12775.7 gi|330834306|ref|YP_004409034.1| - 0.0048 16.4 0.0 0.008 15.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|330834306|ref|YP_004409034.1| - 0.0068 16.2 0.0 0.18 11.5 0.0 2.8 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|330834306|ref|YP_004409034.1| - 0.011 16.3 0.0 0.019 15.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|330834306|ref|YP_004409034.1| - 0.013 15.1 0.0 3.2 7.3 0.0 3.0 3 0 0 3 3 3 0 Ferrous iron transport protein B MMR_HSR1 PF01926.23 gi|330834306|ref|YP_004409034.1| - 0.038 14.1 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|330834306|ref|YP_004409034.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain CLP1_P PF16575.5 gi|330834306|ref|YP_004409034.1| - 0.047 13.5 0.0 3.1 7.5 0.0 2.8 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|330834306|ref|YP_004409034.1| - 0.055 13.2 0.0 0.094 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|330834306|ref|YP_004409034.1| - 0.06 13.6 0.0 0.15 12.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|330834306|ref|YP_004409034.1| - 0.064 12.7 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 cobW PF02492.19 gi|330834306|ref|YP_004409034.1| - 0.065 12.8 0.0 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.6 gi|330834306|ref|YP_004409034.1| - 0.093 12.9 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|330834306|ref|YP_004409034.1| - 0.1 11.7 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit APS_kinase PF01583.20 gi|330834306|ref|YP_004409034.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|330834306|ref|YP_004409034.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|330834306|ref|YP_004409034.1| - 0.13 12.7 0.0 0.27 11.6 0.0 1.6 1 1 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|330834306|ref|YP_004409034.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Roc PF08477.13 gi|330834306|ref|YP_004409034.1| - 0.19 12.0 0.0 0.42 10.8 0.0 1.6 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase TrwB_AAD_bind PF10412.9 gi|330834306|ref|YP_004409034.1| - 0.19 10.6 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|330834306|ref|YP_004409034.1| - 0.2 10.6 0.0 0.4 9.6 0.0 1.4 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Pribosyltran_N PF13793.6 gi|330834307|ref|YP_004409035.1| - 4.5e-29 100.7 0.0 1.3e-27 96.0 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|330834307|ref|YP_004409035.1| - 5.3e-20 71.5 0.8 5.7e-18 64.9 0.1 2.5 3 0 0 3 3 3 2 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|330834307|ref|YP_004409035.1| - 6.9e-08 32.7 1.1 3.2e-06 27.3 0.4 2.2 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|330834307|ref|YP_004409035.1| - 0.0021 17.5 0.0 0.012 15.1 0.0 2.0 2 0 0 2 2 2 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|330834307|ref|YP_004409035.1| - 0.082 12.4 0.1 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase UPF0020 PF01170.18 gi|330834308|ref|YP_004409036.1| - 4.8e-19 68.8 0.0 2.4e-18 66.5 0.0 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 N6_N4_Mtase PF01555.18 gi|330834308|ref|YP_004409036.1| - 7.5e-07 29.1 0.0 0.00028 20.7 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_31 PF13847.6 gi|330834308|ref|YP_004409036.1| - 0.0011 18.8 0.0 0.0022 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330834308|ref|YP_004409036.1| - 0.0016 18.0 0.0 0.0025 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|330834308|ref|YP_004409036.1| - 0.0027 18.4 0.0 0.0048 17.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330834308|ref|YP_004409036.1| - 0.005 16.5 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|330834308|ref|YP_004409036.1| - 0.082 13.6 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Eco57I PF07669.11 gi|330834308|ref|YP_004409036.1| - 0.18 12.3 0.0 1.3 9.6 0.0 2.1 2 0 0 2 2 2 0 Eco57I restriction-modification methylase Lactamase_B_2 PF12706.7 gi|330834309|ref|YP_004409037.1| - 4e-17 62.4 0.0 1.7e-15 57.1 0.0 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330834309|ref|YP_004409037.1| - 8.7e-10 38.9 0.0 5.2e-09 36.4 0.0 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|330834309|ref|YP_004409037.1| - 0.062 13.0 0.0 0.16 11.7 0.0 1.7 1 0 0 1 1 1 0 tRNase Z endonuclease RNA_binding PF01877.17 gi|330834310|ref|YP_004409038.1| - 3.2e-18 66.1 0.1 4e-18 65.8 0.1 1.1 1 0 0 1 1 1 1 RNA binding TetR_C_7 PF14246.6 gi|330834310|ref|YP_004409038.1| - 0.11 12.5 0.1 6 6.9 0.2 2.3 1 1 2 3 3 3 0 AefR-like transcriptional repressor, C-terminal domain AAA_17 PF13207.6 gi|330834311|ref|YP_004409039.1| - 7.3e-07 29.7 1.0 4e-06 27.3 0.2 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|330834311|ref|YP_004409039.1| - 1e-06 29.3 0.4 3.3e-06 27.7 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330834311|ref|YP_004409039.1| - 6.6e-05 23.1 0.1 0.0004 20.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|330834311|ref|YP_004409039.1| - 0.0061 16.8 0.7 0.038 14.2 0.7 2.1 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|330834311|ref|YP_004409039.1| - 0.014 15.1 0.2 3.1 7.4 0.2 2.1 1 1 1 2 2 2 0 Dephospho-CoA kinase DUF374 PF04028.13 gi|330834311|ref|YP_004409039.1| - 0.14 11.7 0.1 4.6 6.9 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF374) LigT_PEase PF02834.16 gi|330834312|ref|YP_004409040.1| - 2.3e-31 107.8 0.2 6.3e-17 61.6 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|330834312|ref|YP_004409040.1| - 2e-14 53.8 0.0 2.4e-14 53.5 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|330834312|ref|YP_004409040.1| - 1e-10 41.9 0.0 1.5e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain tRNA_NucTransf2 PF09249.11 gi|330834313|ref|YP_004409041.1| - 1.2e-42 144.8 0.0 1.9e-42 144.1 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|330834313|ref|YP_004409041.1| - 4.2e-15 55.8 0.2 1e-14 54.6 0.2 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|330834313|ref|YP_004409041.1| - 1.5e-08 35.0 0.0 3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain Polbeta PF18765.1 gi|330834313|ref|YP_004409041.1| - 0.024 14.7 0.0 0.058 13.5 0.0 1.6 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|330834313|ref|YP_004409041.1| - 0.079 13.2 0.0 0.2 11.9 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase beta palm RIO1 PF01163.22 gi|330834314|ref|YP_004409042.1| - 0.0061 16.2 0.0 0.012 15.2 0.0 1.5 1 1 0 1 1 1 1 RIO1 family VbhA PF18495.1 gi|330834314|ref|YP_004409042.1| - 0.12 12.3 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 Antitoxin VbhA DUF1425 PF07233.12 gi|330834314|ref|YP_004409042.1| - 0.14 12.0 0.0 0.36 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1425) zf-IS66 PF13005.7 gi|330834315|ref|YP_004409043.1| - 0.0011 19.4 0.3 0.061 13.7 0.0 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 TFIIS_C PF01096.18 gi|330834315|ref|YP_004409043.1| - 0.003 17.4 2.1 1.4 8.9 0.2 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|330834315|ref|YP_004409043.1| - 0.007 16.1 0.7 1.4 8.7 0.0 2.2 2 0 0 2 2 2 2 Ribosomal protein S27 Rad50_zn_hook PF04423.14 gi|330834315|ref|YP_004409043.1| - 0.018 14.9 0.1 0.023 14.5 0.1 1.2 1 0 0 1 1 1 0 Rad50 zinc hook motif HypA PF01155.19 gi|330834315|ref|YP_004409043.1| - 0.02 14.9 0.1 0.023 14.7 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|330834315|ref|YP_004409043.1| - 0.02 14.8 1.4 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|330834315|ref|YP_004409043.1| - 0.025 14.5 0.6 2.5 8.2 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|330834315|ref|YP_004409043.1| - 0.038 13.6 1.1 0.61 9.7 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF2757 PF10955.8 gi|330834315|ref|YP_004409043.1| - 0.041 14.1 0.5 0.8 10.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2757) zf-C4_Topoisom PF01396.19 gi|330834315|ref|YP_004409043.1| - 0.047 13.5 0.5 0.047 13.5 0.5 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|330834315|ref|YP_004409043.1| - 0.049 13.7 4.4 1.9 8.7 4.4 2.2 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|330834315|ref|YP_004409043.1| - 0.059 13.3 2.0 1.4 8.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|330834315|ref|YP_004409043.1| - 0.11 12.1 2.1 2.1 7.9 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-C2H2 PF00096.26 gi|330834315|ref|YP_004409043.1| - 0.19 12.3 6.1 3.5 8.3 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ACC PF17848.1 gi|330834315|ref|YP_004409043.1| - 0.27 11.3 9.3 0.67 10.1 0.8 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Nudix_N_2 PF14803.6 gi|330834315|ref|YP_004409043.1| - 0.32 10.9 4.8 4.4 7.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|330834315|ref|YP_004409043.1| - 0.45 10.3 3.9 2.1 8.2 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain TatD_DNase PF01026.21 gi|330834316|ref|YP_004409044.1| - 1.6e-29 103.0 0.0 2e-29 102.8 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase adh_short PF00106.25 gi|330834317|ref|YP_004409045.1| - 8.4e-47 159.2 0.1 1.6e-46 158.2 0.1 1.4 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|330834317|ref|YP_004409045.1| - 2.3e-33 115.7 0.0 3.5e-33 115.1 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|330834317|ref|YP_004409045.1| - 1.3e-07 31.7 0.1 4.2e-06 26.8 0.1 2.1 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|330834317|ref|YP_004409045.1| - 3e-07 30.1 0.0 5.3e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|330834317|ref|YP_004409045.1| - 0.00096 18.3 0.0 0.0014 17.8 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|330834317|ref|YP_004409045.1| - 0.013 14.9 0.1 0.038 13.4 0.1 1.7 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase 3H PF02829.14 gi|330834317|ref|YP_004409045.1| - 0.1 12.9 0.0 0.6 10.4 0.1 2.1 2 0 0 2 2 2 0 3H domain FAA_hydrolase PF01557.18 gi|330834318|ref|YP_004409046.1| - 9.1e-45 153.0 0.0 1.1e-44 152.7 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|330834318|ref|YP_004409046.1| - 3.1e-09 37.6 0.0 7.2e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF2437) HpaB_N PF11794.8 gi|330834319|ref|YP_004409047.1| - 3.2e-83 279.5 0.0 4.2e-83 279.2 0.0 1.1 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|330834319|ref|YP_004409047.1| - 3e-52 176.7 0.0 5.1e-52 175.9 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Glyoxalase PF00903.25 gi|330834320|ref|YP_004409048.1| - 3.2e-33 114.7 1.7 1.7e-18 67.0 0.8 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|330834320|ref|YP_004409048.1| - 1.7e-10 41.1 0.2 1.3e-05 25.4 0.2 2.7 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|330834320|ref|YP_004409048.1| - 1.9e-06 28.6 0.0 0.0046 17.7 0.0 2.4 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|330834320|ref|YP_004409048.1| - 0.00017 21.8 2.5 0.38 10.9 0.0 2.8 3 1 0 3 3 3 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|330834320|ref|YP_004409048.1| - 0.063 13.2 0.9 12 5.9 0.0 3.1 2 1 0 2 2 2 0 Glyoxalase-like domain HTH_10 PF04967.12 gi|330834321|ref|YP_004409049.1| - 6.3e-17 61.1 0.6 1.3e-16 60.1 0.2 1.7 2 0 0 2 2 2 1 HTH DNA binding domain GerE PF00196.19 gi|330834321|ref|YP_004409049.1| - 0.018 14.6 0.0 0.051 13.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Tex_N PF09371.10 gi|330834321|ref|YP_004409049.1| - 0.057 13.1 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Tex-like protein N-terminal domain Sugar_tr PF00083.24 gi|330834322|ref|YP_004409050.1| - 7.6e-39 133.8 17.6 1e-38 133.4 17.6 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330834322|ref|YP_004409050.1| - 8.2e-27 94.0 66.4 2.5e-24 85.9 40.8 2.6 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|330834322|ref|YP_004409050.1| - 0.00067 18.1 2.1 0.00067 18.1 2.1 2.8 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family PPR PF01535.20 gi|330834322|ref|YP_004409050.1| - 0.094 13.0 0.1 0.61 10.5 0.1 2.3 2 0 0 2 2 2 0 PPR repeat TRI12 PF06609.13 gi|330834322|ref|YP_004409050.1| - 0.22 9.9 8.1 0.064 11.7 1.6 2.1 2 0 0 2 2 2 0 Fungal trichothecene efflux pump (TRI12) Glyco_trans_2_3 PF13632.6 gi|330834324|ref|YP_004409052.1| - 2.2e-18 66.9 0.1 3.5e-18 66.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|330834324|ref|YP_004409052.1| - 1.3e-06 28.5 0.0 2.2e-06 27.8 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 HMGL-like PF00682.19 gi|330834325|ref|YP_004409053.1| - 2e-73 247.2 3.6 2.7e-73 246.8 3.6 1.2 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.21 gi|330834325|ref|YP_004409053.1| - 8.3e-14 51.3 0.2 8.3e-14 51.3 0.2 2.7 4 0 0 4 4 4 1 Lrp/AsnC ligand binding domain AP_endonuc_2 PF01261.24 gi|330834325|ref|YP_004409053.1| - 0.0002 20.9 0.5 0.00088 18.8 0.5 2.2 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NapD PF03927.13 gi|330834325|ref|YP_004409053.1| - 0.00047 20.1 1.4 0.0012 18.8 0.4 2.3 2 0 0 2 2 2 1 NapD protein P2 PF07194.11 gi|330834325|ref|YP_004409053.1| - 0.0089 16.1 0.2 0.63 10.1 0.2 2.9 2 0 0 2 2 2 1 P2 response regulator binding domain ACT_4 PF13291.6 gi|330834325|ref|YP_004409053.1| - 0.019 15.6 5.6 0.021 15.4 0.3 3.5 4 1 1 5 5 5 0 ACT domain Radical_SAM PF04055.21 gi|330834325|ref|YP_004409053.1| - 0.034 14.5 2.1 0.33 11.3 0.9 2.7 1 1 1 2 2 2 0 Radical SAM superfamily Glyco_hydro_97 PF10566.9 gi|330834325|ref|YP_004409053.1| - 0.092 12.0 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 AlkA_N PF06029.11 gi|330834325|ref|YP_004409053.1| - 0.1 12.9 0.4 4 7.7 0.0 2.6 2 0 0 2 2 2 0 AlkA N-terminal domain CinA_KH PF18146.1 gi|330834325|ref|YP_004409053.1| - 0.22 11.7 1.2 2.7 8.2 0.3 2.9 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain FtsX_ECD PF18075.1 gi|330834325|ref|YP_004409053.1| - 0.64 10.7 2.9 23 5.7 0.1 3.3 3 0 0 3 3 3 0 FtsX extracellular domain Ca_bind_SSO6904 PF18249.1 gi|330834327|ref|YP_004409055.1| - 2.6e-38 130.3 3.6 2.8e-38 130.1 3.6 1.0 1 0 0 1 1 1 1 Calcium binding protein SSO6904 AA_kinase PF00696.28 gi|330834328|ref|YP_004409056.1| - 4.4e-31 108.3 0.0 1.1e-30 107.0 0.0 1.6 1 1 0 1 1 1 1 Amino acid kinase family DUF3089 PF11288.8 gi|330834328|ref|YP_004409056.1| - 0.22 11.0 0.0 0.31 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3089) Cren7 PF11520.8 gi|330834329|ref|YP_004409057.1| - 1.1e-30 105.3 1.9 1.2e-30 105.2 1.9 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 adh_short_C2 PF13561.6 gi|330834330|ref|YP_004409058.1| - 3.2e-34 118.5 0.0 4.7e-34 118.0 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330834330|ref|YP_004409058.1| - 3.3e-34 118.0 0.0 4e-34 117.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330834330|ref|YP_004409058.1| - 0.00086 19.3 0.0 0.0012 18.8 0.0 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|330834330|ref|YP_004409058.1| - 0.0018 18.2 0.0 0.003 17.5 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|330834330|ref|YP_004409058.1| - 0.069 13.4 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Tudor_2 PF18104.1 gi|330834331|ref|YP_004409059.1| - 0.11 12.2 0.1 0.27 11.0 0.0 1.6 2 0 0 2 2 2 0 Jumonji domain-containing protein 2A Tudor domain NAD_binding_2 PF03446.15 gi|330834332|ref|YP_004409060.1| - 9.4e-36 123.4 1.6 1.4e-35 122.8 1.6 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|330834332|ref|YP_004409060.1| - 2.5e-25 89.1 0.1 4.3e-25 88.3 0.1 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|330834332|ref|YP_004409060.1| - 4.3e-12 46.5 0.1 1.3e-11 44.9 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|330834332|ref|YP_004409060.1| - 1.9e-05 24.7 0.4 5.6e-05 23.2 0.1 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330834332|ref|YP_004409060.1| - 2e-05 24.0 0.4 6.1e-05 22.4 0.2 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|330834332|ref|YP_004409060.1| - 0.00012 21.6 0.1 0.00023 20.8 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain GFO_IDH_MocA PF01408.22 gi|330834332|ref|YP_004409060.1| - 0.00027 21.8 0.0 0.00076 20.3 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold UDPG_MGDP_dh_C PF03720.15 gi|330834332|ref|YP_004409060.1| - 0.0035 17.7 0.0 0.0069 16.8 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 3HCDH_N PF02737.18 gi|330834332|ref|YP_004409060.1| - 0.1 12.5 0.1 0.22 11.4 0.1 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAM177 PF14774.6 gi|330834332|ref|YP_004409060.1| - 0.13 12.7 0.0 0.27 11.6 0.0 1.5 1 0 0 1 1 1 0 FAM177 family SRP54 PF00448.22 gi|330834334|ref|YP_004409062.1| - 1.6e-70 236.7 0.0 2.5e-70 236.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|330834334|ref|YP_004409062.1| - 3.5e-29 101.3 4.2 1.8e-28 99.1 1.8 2.5 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|330834334|ref|YP_004409062.1| - 7.1e-14 51.8 0.7 3.7e-13 49.5 0.6 2.4 2 0 0 2 2 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|330834334|ref|YP_004409062.1| - 5.8e-08 32.8 0.0 2e-07 31.1 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|330834334|ref|YP_004409062.1| - 1.6e-05 24.7 0.0 3.6e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain cobW PF02492.19 gi|330834334|ref|YP_004409062.1| - 0.00012 21.7 0.4 0.0055 16.3 0.4 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_31 PF13614.6 gi|330834334|ref|YP_004409062.1| - 0.0007 19.5 0.8 0.0046 16.9 0.1 2.7 2 1 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|330834334|ref|YP_004409062.1| - 0.0011 18.0 0.6 0.0066 15.5 0.0 2.2 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|330834334|ref|YP_004409062.1| - 0.0012 19.3 1.7 0.022 15.2 0.1 3.1 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330834334|ref|YP_004409062.1| - 0.0012 19.1 0.0 0.0089 16.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|330834334|ref|YP_004409062.1| - 0.0012 18.4 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase Zeta_toxin PF06414.12 gi|330834334|ref|YP_004409062.1| - 0.0019 17.5 0.0 0.0039 16.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|330834334|ref|YP_004409062.1| - 0.002 18.5 0.0 0.0047 17.3 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|330834334|ref|YP_004409062.1| - 0.0022 18.1 0.0 0.0055 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|330834334|ref|YP_004409062.1| - 0.0028 17.6 0.1 0.0065 16.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B GTP_EFTU PF00009.27 gi|330834334|ref|YP_004409062.1| - 0.0045 16.5 0.2 0.036 13.6 0.2 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_28 PF13521.6 gi|330834334|ref|YP_004409062.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|330834334|ref|YP_004409062.1| - 0.006 16.4 0.4 0.9 9.3 0.0 2.7 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|330834334|ref|YP_004409062.1| - 0.0076 16.0 0.3 0.032 14.0 0.0 2.3 3 1 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|330834334|ref|YP_004409062.1| - 0.0099 15.9 0.1 0.029 14.4 0.1 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|330834334|ref|YP_004409062.1| - 0.018 15.6 0.4 0.098 13.2 0.4 2.4 1 1 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|330834334|ref|YP_004409062.1| - 0.019 14.3 2.2 0.044 13.1 0.1 2.6 2 1 0 2 2 2 0 KaiC ResIII PF04851.15 gi|330834334|ref|YP_004409062.1| - 0.024 14.6 2.9 0.4 10.7 0.2 3.4 2 1 1 4 4 4 0 Type III restriction enzyme, res subunit 6PF2K PF01591.18 gi|330834334|ref|YP_004409062.1| - 0.026 13.9 0.0 0.051 12.9 0.0 1.5 1 0 0 1 1 1 0 6-phosphofructo-2-kinase FeoB_N PF02421.18 gi|330834334|ref|YP_004409062.1| - 0.05 13.1 0.2 0.83 9.2 0.0 2.7 3 0 0 3 3 3 0 Ferrous iron transport protein B APS_kinase PF01583.20 gi|330834334|ref|YP_004409062.1| - 0.091 12.7 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|330834334|ref|YP_004409062.1| - 0.15 11.6 0.3 1.7 8.2 0.3 2.7 2 1 0 2 2 1 0 AAA domain MipZ PF09140.11 gi|330834334|ref|YP_004409062.1| - 0.17 11.1 1.0 8 5.7 0.0 3.1 2 1 0 2 2 2 0 ATPase MipZ DUF5601 PF18151.1 gi|330834334|ref|YP_004409062.1| - 0.28 11.5 1.5 1.5 9.2 0.0 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF5601) eIF-5a PF01287.20 gi|330834335|ref|YP_004409063.1| - 1.9e-08 34.3 0.9 3.3e-08 33.5 0.9 1.4 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|330834335|ref|YP_004409063.1| - 1.9e-05 24.6 0.1 5.1e-05 23.2 0.1 1.7 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain Zn_ribbon_SprT PF17283.2 gi|330834336|ref|YP_004409064.1| - 0.011 15.6 0.3 0.015 15.2 0.3 1.2 1 0 0 1 1 1 0 SprT-like zinc ribbon domain tRNA-synt_1f PF01921.18 gi|330834336|ref|YP_004409064.1| - 0.036 13.0 0.2 0.038 12.9 0.2 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (K) DUF3674 PF12426.8 gi|330834336|ref|YP_004409064.1| - 0.063 13.3 0.0 0.078 13.0 0.0 1.2 1 0 0 1 1 1 0 RNA dependent RNA polymerase zf-B_box PF00643.24 gi|330834336|ref|YP_004409064.1| - 0.28 11.4 4.1 1.3 9.3 4.1 1.8 1 1 0 1 1 1 0 B-box zinc finger TFIIS_C PF01096.18 gi|330834336|ref|YP_004409064.1| - 1 9.3 5.3 10 6.1 1.7 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Ribosomal_L44 PF00935.19 gi|330834336|ref|YP_004409064.1| - 1.8 9.1 4.7 18 5.9 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L44 TP6A_N PF04406.14 gi|330834337|ref|YP_004409065.1| - 3.7e-20 71.7 0.1 6.3e-20 70.9 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.11 gi|330834338|ref|YP_004409066.1| - 6.1e-65 217.9 1.6 6.7e-65 217.8 0.2 1.8 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.6 gi|330834338|ref|YP_004409066.1| - 6.7e-11 42.2 0.0 1.7e-10 40.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|330834338|ref|YP_004409066.1| - 1.5e-10 41.6 0.0 3.1e-10 40.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|330834338|ref|YP_004409066.1| - 1.6e-07 30.5 1.0 2.9e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|330834338|ref|YP_004409066.1| - 0.00015 22.2 0.1 0.0005 20.5 0.0 1.9 2 0 0 2 2 2 1 Ribosomal protein S13/S18 DS PF01916.17 gi|330834339|ref|YP_004409067.1| - 3e-98 328.6 0.0 3.4e-98 328.5 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase RtcB PF01139.17 gi|330834340|ref|YP_004409068.1| - 1.9e-160 534.6 0.0 2.2e-160 534.4 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DEAD PF00270.29 gi|330834342|ref|YP_004409070.1| - 2.6e-31 108.7 0.0 9.2e-30 103.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330834342|ref|YP_004409070.1| - 5.4e-14 52.5 0.0 2.4e-12 47.2 0.0 2.7 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330834342|ref|YP_004409070.1| - 6.4e-10 39.3 0.0 4.7e-09 36.5 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|330834342|ref|YP_004409070.1| - 9.7e-08 32.0 0.0 0.00097 19.0 0.0 2.5 1 1 1 2 2 2 2 DEAD/H associated AAA_19 PF13245.6 gi|330834342|ref|YP_004409070.1| - 0.0089 16.4 0.0 0.029 14.7 0.0 1.9 1 0 0 1 1 1 1 AAA domain L27_2 PF09045.10 gi|330834342|ref|YP_004409070.1| - 0.29 11.1 0.7 0.66 10.0 0.1 1.9 2 0 0 2 2 2 0 L27_2 Alba PF01918.21 gi|330834343|ref|YP_004409071.1| - 1.4e-12 47.3 0.4 1.8e-12 46.9 0.4 1.2 1 0 0 1 1 1 1 Alba DUF1474 PF07342.11 gi|330834343|ref|YP_004409071.1| - 0.13 12.8 0.7 2.2 8.8 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1474) DUF5340 PF17275.2 gi|330834343|ref|YP_004409071.1| - 0.21 11.7 0.1 2.3 8.4 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5340) Topoisom_bac PF01131.20 gi|330834344|ref|YP_004409072.1| - 9.6e-73 245.5 0.1 8.6e-59 199.6 0.0 2.2 2 0 0 2 2 2 2 DNA topoisomerase Toprim PF01751.22 gi|330834344|ref|YP_004409072.1| - 3e-20 72.4 0.0 1.3e-19 70.3 0.0 2.2 1 0 0 1 1 1 1 Toprim domain zf_Rg PF17915.1 gi|330834344|ref|YP_004409072.1| - 6.9e-19 67.0 0.4 6.9e-19 67.0 0.4 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|330834344|ref|YP_004409072.1| - 2.5e-05 24.1 0.1 0.00015 21.6 0.1 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330834344|ref|YP_004409072.1| - 4.3e-05 23.6 0.0 0.00011 22.3 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|330834344|ref|YP_004409072.1| - 0.00026 21.3 0.0 0.0009 19.5 0.0 1.9 2 0 0 2 2 1 1 AAA domain DZR PF12773.7 gi|330834344|ref|YP_004409072.1| - 0.00061 19.8 4.3 0.0046 16.9 0.2 2.3 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330834344|ref|YP_004409072.1| - 0.007 15.7 6.9 0.0082 15.5 1.1 2.5 2 0 0 2 2 2 1 zinc-ribbon domain Toprim_4 PF13662.6 gi|330834344|ref|YP_004409072.1| - 0.011 16.2 0.0 0.036 14.5 0.0 1.9 1 0 0 1 1 1 0 Toprim domain DUF1272 PF06906.11 gi|330834344|ref|YP_004409072.1| - 0.02 15.0 1.1 7.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) NOB1_Zn_bind PF08772.11 gi|330834344|ref|YP_004409072.1| - 0.055 13.6 0.1 0.13 12.4 0.1 1.6 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_15 PF17032.5 gi|330834344|ref|YP_004409072.1| - 0.067 14.0 0.2 0.067 14.0 0.2 1.7 2 0 0 2 2 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|330834344|ref|YP_004409072.1| - 0.1 12.6 3.2 1.5 8.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|330834344|ref|YP_004409072.1| - 0.12 12.2 1.9 0.84 9.5 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2HC5 PF06221.13 gi|330834344|ref|YP_004409072.1| - 0.5 10.4 3.1 0.51 10.4 0.6 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.12 gi|330834344|ref|YP_004409072.1| - 0.74 9.4 3.3 24 4.5 0.0 2.9 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|330834344|ref|YP_004409072.1| - 0.75 9.2 3.2 4.3 6.8 1.2 2.6 2 0 0 2 2 2 0 Transcription factor zinc-finger TackOD1 PF18551.1 gi|330834344|ref|YP_004409072.1| - 1 9.0 3.7 0.93 9.1 0.4 2.2 2 0 0 2 2 2 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|330834344|ref|YP_004409072.1| - 5 7.3 6.6 2.2 8.5 0.6 2.6 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|330834344|ref|YP_004409072.1| - 7.3 6.4 7.7 1.1 9.0 0.3 2.6 2 1 0 2 2 2 0 zinc-ribbon domain Alba PF01918.21 gi|330834345|ref|YP_004409073.1| - 2.1e-22 78.7 0.2 3e-22 78.2 0.2 1.3 1 0 0 1 1 1 1 Alba DUF3954 PF13128.6 gi|330834345|ref|YP_004409073.1| - 0.014 15.2 0.4 0.042 13.6 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) ERCC3_RAD25_C PF16203.5 gi|330834348|ref|YP_004409076.1| - 7e-23 81.1 0.1 6.2e-22 78.0 0.1 2.0 2 0 0 2 2 2 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|330834348|ref|YP_004409076.1| - 1.3e-20 74.1 0.0 3.4e-20 72.7 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|330834348|ref|YP_004409076.1| - 1.8e-18 66.9 0.3 6.8e-18 65.0 0.1 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|330834348|ref|YP_004409076.1| - 3.3e-08 33.5 0.0 1.1e-07 31.8 0.0 2.0 1 0 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|330834348|ref|YP_004409076.1| - 8.1e-06 24.8 0.0 9.3e-05 21.3 0.0 2.2 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|330834348|ref|YP_004409076.1| - 0.0042 17.4 0.5 0.028 14.7 0.0 2.6 3 0 0 3 3 3 1 AAA domain Herpes_UL42 PF02282.16 gi|330834348|ref|YP_004409076.1| - 0.017 15.0 0.0 0.064 13.1 0.0 1.9 2 0 0 2 2 2 0 DNA polymerase processivity factor (UL42) DUF2075 PF09848.9 gi|330834348|ref|YP_004409076.1| - 0.024 13.9 0.0 0.073 12.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) XPB_DRD PF18458.1 gi|330834348|ref|YP_004409076.1| - 0.12 12.2 0.1 0.47 10.4 0.1 2.0 2 0 0 2 2 2 0 Xeroderma pigmentosum group B helicase damage recognition domain AAA_30 PF13604.6 gi|330834348|ref|YP_004409076.1| - 0.15 11.8 0.1 2.9 7.6 0.0 2.5 3 0 0 3 3 3 0 AAA domain CutA1 PF03091.15 gi|330834350|ref|YP_004409078.1| - 2.4e-36 123.6 0.0 2.7e-36 123.4 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Glu-tRNAGln PF02686.15 gi|330834351|ref|YP_004409079.1| - 3.1e-20 72.2 0.1 4.1e-20 71.8 0.1 1.2 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit DUF2299 PF10061.9 gi|330834351|ref|YP_004409079.1| - 0.08 12.7 0.4 0.11 12.3 0.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) Amidase PF01425.21 gi|330834352|ref|YP_004409080.1| - 4.8e-141 470.8 0.0 5.4e-141 470.6 0.0 1.0 1 0 0 1 1 1 1 Amidase Wyosine_form PF08608.12 gi|330834353|ref|YP_004409081.1| - 8.9e-23 80.4 0.1 3.2e-22 78.6 0.0 1.9 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|330834353|ref|YP_004409081.1| - 8.4e-17 62.1 0.0 1.4e-16 61.4 0.0 1.4 1 1 0 1 1 1 1 Radical SAM superfamily CTP-dep_RFKase PF01982.16 gi|330834354|ref|YP_004409082.1| - 1.3e-38 131.8 0.0 1.9e-38 131.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 MarR_2 PF12802.7 gi|330834354|ref|YP_004409082.1| - 2.4e-09 37.0 0.3 7.2e-09 35.4 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|330834354|ref|YP_004409082.1| - 2e-08 34.1 0.7 4.6e-08 32.9 0.7 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|330834354|ref|YP_004409082.1| - 7.1e-08 32.3 1.0 1.4e-07 31.3 1.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|330834354|ref|YP_004409082.1| - 1e-06 28.5 0.8 1.9e-06 27.6 0.8 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|330834354|ref|YP_004409082.1| - 1.1e-06 28.1 0.7 2.2e-06 27.1 0.7 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|330834354|ref|YP_004409082.1| - 0.0001 22.1 1.4 0.00032 20.5 0.6 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|330834354|ref|YP_004409082.1| - 0.00019 21.4 0.2 0.0003 20.8 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|330834354|ref|YP_004409082.1| - 0.00028 20.7 1.7 0.00057 19.8 1.7 1.4 1 0 0 1 1 1 1 HTH domain HTH_36 PF13730.6 gi|330834354|ref|YP_004409082.1| - 0.0018 18.2 0.3 0.0037 17.2 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|330834354|ref|YP_004409082.1| - 0.0021 18.0 0.7 0.0034 17.3 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|330834354|ref|YP_004409082.1| - 0.0026 17.6 1.4 0.0044 16.8 1.4 1.3 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_38 PF13936.6 gi|330834354|ref|YP_004409082.1| - 0.0034 17.1 3.6 0.014 15.1 0.0 2.6 2 1 1 3 3 2 1 Helix-turn-helix domain HTH_12 PF08461.10 gi|330834354|ref|YP_004409082.1| - 0.0038 17.1 1.8 0.008 16.1 1.8 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|330834354|ref|YP_004409082.1| - 0.0046 16.4 0.2 0.0098 15.4 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|330834354|ref|YP_004409082.1| - 0.0081 16.1 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 gi|330834354|ref|YP_004409082.1| - 0.011 16.2 0.5 0.021 15.3 0.5 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.12 gi|330834354|ref|YP_004409082.1| - 0.011 14.1 0.4 0.015 13.7 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Crp PF00325.20 gi|330834354|ref|YP_004409082.1| - 0.016 14.8 0.0 0.037 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family MazE_antitoxin PF04014.18 gi|330834354|ref|YP_004409082.1| - 0.022 14.7 0.0 0.2 11.6 0.0 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE, bacterial antitoxin TFIIE_alpha PF02002.17 gi|330834354|ref|YP_004409082.1| - 0.024 14.5 1.5 0.039 13.8 1.5 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit B-block_TFIIIC PF04182.12 gi|330834354|ref|YP_004409082.1| - 0.024 14.8 0.3 0.046 13.9 0.3 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4364 PF14277.6 gi|330834354|ref|YP_004409082.1| - 0.025 14.3 0.2 0.043 13.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Replic_Relax PF13814.6 gi|330834354|ref|YP_004409082.1| - 0.025 14.6 0.1 0.033 14.2 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_DeoR PF08220.12 gi|330834354|ref|YP_004409082.1| - 0.026 14.3 0.8 0.048 13.4 0.8 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|330834354|ref|YP_004409082.1| - 0.028 14.6 0.4 0.082 13.1 0.4 1.8 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF1670 PF07900.11 gi|330834354|ref|YP_004409082.1| - 0.046 13.1 0.1 0.073 12.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) HTH_IclR PF09339.10 gi|330834354|ref|YP_004409082.1| - 0.048 13.5 0.1 0.085 12.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_37 PF13744.6 gi|330834354|ref|YP_004409082.1| - 0.054 13.5 0.4 0.093 12.7 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|330834354|ref|YP_004409082.1| - 0.065 13.1 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|330834354|ref|YP_004409082.1| - 0.069 13.5 0.2 0.12 12.8 0.2 1.4 1 0 0 1 1 1 0 Transcriptional regulator RepL PF05732.11 gi|330834354|ref|YP_004409082.1| - 0.079 12.4 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_34 PF13601.6 gi|330834354|ref|YP_004409082.1| - 0.1 12.8 0.4 0.28 11.4 0.5 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain KorB PF08535.10 gi|330834354|ref|YP_004409082.1| - 0.12 12.5 0.1 0.24 11.4 0.1 1.5 1 0 0 1 1 1 0 KorB domain Mga PF05043.13 gi|330834354|ref|YP_004409082.1| - 0.12 13.0 1.3 0.17 12.5 0.5 1.7 2 0 0 2 2 1 0 Mga helix-turn-helix domain CTP_transf_like PF01467.26 gi|330834355|ref|YP_004409083.1| - 9.6e-18 64.8 0.2 2e-17 63.7 0.1 1.5 2 0 0 2 2 2 1 Cytidylyltransferase-like DUF357 PF04010.13 gi|330834355|ref|YP_004409083.1| - 4.4e-16 58.7 0.2 1.5e-15 57.0 0.2 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF357) DUF334 PF03904.13 gi|330834355|ref|YP_004409083.1| - 0.071 12.6 0.3 0.071 12.6 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF334) DUF4298 PF14131.6 gi|330834355|ref|YP_004409083.1| - 0.087 12.8 0.3 0.52 10.3 0.2 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) DUF480 PF04337.12 gi|330834355|ref|YP_004409083.1| - 0.17 11.9 0.4 2.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF480 RPN7 PF10602.9 gi|330834355|ref|YP_004409083.1| - 0.23 11.2 2.9 0.37 10.5 0.5 2.1 2 0 0 2 2 2 0 26S proteasome subunit RPN7 TP_methylase PF00590.20 gi|330834356|ref|YP_004409084.1| - 1.8e-22 80.4 0.0 2.1e-22 80.1 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Metallophos PF00149.28 gi|330834357|ref|YP_004409085.1| - 2.8e-05 24.7 1.3 0.00011 22.8 1.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase ECSIT PF06239.11 gi|330834357|ref|YP_004409085.1| - 0.033 13.3 0.0 0.063 12.4 0.0 1.4 1 0 0 1 1 1 0 Evolutionarily conserved signalling intermediate in Toll pathway ERp29_N PF07912.13 gi|330834357|ref|YP_004409085.1| - 0.047 13.9 0.2 0.1 12.7 0.2 1.6 1 0 0 1 1 1 0 ERp29, N-terminal domain TOPRIM_C PF16898.5 gi|330834357|ref|YP_004409085.1| - 0.094 13.0 0.3 0.15 12.4 0.3 1.3 1 0 0 1 1 1 0 C-terminal associated domain of TOPRIM TF_Zn_Ribbon PF08271.12 gi|330834358|ref|YP_004409086.1| - 3.3e-14 52.1 0.6 5.5e-14 51.4 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding TFIIB PF00382.19 gi|330834358|ref|YP_004409086.1| - 1.8e-13 50.3 0.0 7.5e-10 38.7 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat HTH_11 PF08279.12 gi|330834358|ref|YP_004409086.1| - 0.00067 19.6 3.8 0.042 13.8 0.2 3.2 4 0 0 4 4 4 1 HTH domain HTH_Mga PF08280.11 gi|330834358|ref|YP_004409086.1| - 0.0015 18.5 0.2 1.4 9.0 0.0 2.4 2 0 0 2 2 2 2 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|330834358|ref|YP_004409086.1| - 0.0018 17.8 0.0 0.0092 15.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|330834358|ref|YP_004409086.1| - 0.014 15.1 0.4 0.077 12.7 0.1 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 DUF2089 PF09862.9 gi|330834358|ref|YP_004409086.1| - 0.066 13.3 0.2 0.31 11.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2089) A2L_zn_ribbon PF08792.10 gi|330834358|ref|YP_004409086.1| - 0.08 12.7 0.7 0.13 12.0 0.7 1.4 1 0 0 1 1 1 0 A2L zinc ribbon domain Gar1 PF04410.14 gi|330834359|ref|YP_004409087.1| - 7.8e-05 22.5 0.0 9.8e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region Prominin PF05478.11 gi|330834360|ref|YP_004409088.1| - 0.00031 18.9 22.6 0.0004 18.5 22.6 1.0 1 0 0 1 1 1 1 Prominin Baculo_PEP_C PF04513.12 gi|330834360|ref|YP_004409088.1| - 0.00061 19.8 11.7 0.12 12.4 4.5 3.2 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.11 gi|330834360|ref|YP_004409088.1| - 0.0043 17.3 13.4 0.0091 16.2 1.3 3.8 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.9 gi|330834360|ref|YP_004409088.1| - 0.0043 17.1 59.5 0.019 15.0 30.8 3.9 1 1 1 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Bap31_Bap29_C PF18035.1 gi|330834360|ref|YP_004409088.1| - 0.0046 16.9 10.7 0.0046 16.9 10.7 4.5 2 2 1 3 3 2 2 Bap31/Bap29 cytoplasmic coiled-coil domain Cluap1 PF10234.9 gi|330834360|ref|YP_004409088.1| - 0.0048 16.3 22.2 0.0048 16.3 22.2 2.7 1 1 2 3 3 3 1 Clusterin-associated protein-1 Tex_N PF09371.10 gi|330834360|ref|YP_004409088.1| - 0.011 15.5 2.6 0.011 15.5 2.6 4.7 1 1 4 5 5 4 0 Tex-like protein N-terminal domain Cep57_CLD_2 PF14197.6 gi|330834360|ref|YP_004409088.1| - 0.017 15.2 11.9 0.017 15.2 11.9 4.3 3 1 2 5 5 5 0 Centrosome localisation domain of PPC89 AcylCoA_dehyd_C PF12186.8 gi|330834360|ref|YP_004409088.1| - 0.017 15.2 20.3 0.039 14.1 0.7 4.2 1 1 3 4 4 4 0 Acyl-CoA dehydrogenase C terminal Mod_r PF07200.13 gi|330834360|ref|YP_004409088.1| - 0.032 14.4 7.7 0.032 14.4 7.7 4.5 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein GAS PF13851.6 gi|330834360|ref|YP_004409088.1| - 0.032 13.6 60.6 0.014 14.8 20.9 2.7 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding SlyX PF04102.12 gi|330834360|ref|YP_004409088.1| - 0.034 14.8 3.1 0.034 14.8 3.1 5.6 2 2 2 4 4 3 0 SlyX MCPsignal PF00015.21 gi|330834360|ref|YP_004409088.1| - 0.039 13.8 15.2 0.26 11.1 5.5 2.9 1 1 0 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain HSBP1 PF06825.12 gi|330834360|ref|YP_004409088.1| - 0.041 13.7 12.3 2.5 8.0 1.0 5.1 3 2 2 5 5 5 0 Heat shock factor binding protein 1 DUF1664 PF07889.12 gi|330834360|ref|YP_004409088.1| - 0.056 13.5 34.0 0.95 9.5 7.7 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|330834360|ref|YP_004409088.1| - 0.062 11.9 41.4 0.033 12.9 38.2 1.8 1 1 1 2 2 2 0 AAA domain ATG16 PF08614.11 gi|330834360|ref|YP_004409088.1| - 0.08 13.2 47.5 0.74 10.0 10.0 3.4 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.22 gi|330834360|ref|YP_004409088.1| - 0.08 13.2 54.8 0.22 11.7 20.7 4.5 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain MAP65_ASE1 PF03999.12 gi|330834360|ref|YP_004409088.1| - 0.084 11.6 45.2 2.8 6.5 32.0 2.2 1 1 1 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) APG6_N PF17675.1 gi|330834360|ref|YP_004409088.1| - 0.084 13.4 58.7 0.19 12.2 15.4 4.3 1 1 3 4 4 3 0 Apg6 coiled-coil region Spc7 PF08317.11 gi|330834360|ref|YP_004409088.1| - 0.1 11.4 54.0 0.82 8.5 16.2 3.0 1 1 1 2 2 2 0 Spc7 kinetochore protein HAP1_N PF04849.13 gi|330834360|ref|YP_004409088.1| - 0.2 10.8 39.5 0.19 10.9 18.6 2.7 2 1 0 2 2 2 0 HAP1 N-terminal conserved region Fez1 PF06818.15 gi|330834360|ref|YP_004409088.1| - 0.2 12.1 44.7 0.38 11.2 18.8 2.4 1 1 1 2 2 2 0 Fez1 DUF4407 PF14362.6 gi|330834360|ref|YP_004409088.1| - 0.21 10.9 30.1 0.041 13.2 9.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) DUF3450 PF11932.8 gi|330834360|ref|YP_004409088.1| - 0.22 10.8 38.9 0.67 9.2 12.4 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) OmpH PF03938.14 gi|330834360|ref|YP_004409088.1| - 0.27 11.6 54.5 0.47 10.8 17.2 3.6 1 1 2 3 3 3 0 Outer membrane protein (OmpH-like) TPR_MLP1_2 PF07926.12 gi|330834360|ref|YP_004409088.1| - 0.32 11.1 47.9 0.35 10.9 13.2 3.9 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein LPP PF04728.13 gi|330834360|ref|YP_004409088.1| - 0.33 11.4 9.8 3.6 8.0 2.4 4.3 3 1 1 4 4 4 0 Lipoprotein leucine-zipper HAUS-augmin3 PF14932.6 gi|330834360|ref|YP_004409088.1| - 0.37 10.3 37.7 0.31 10.6 9.8 3.1 1 1 1 3 3 3 0 HAUS augmin-like complex subunit 3 DUF3584 PF12128.8 gi|330834360|ref|YP_004409088.1| - 0.39 8.2 40.7 0.55 7.7 21.2 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Bacillus_HBL PF05791.11 gi|330834360|ref|YP_004409088.1| - 0.48 10.2 24.7 2.4 7.9 8.2 3.4 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DUF4201 PF13870.6 gi|330834360|ref|YP_004409088.1| - 0.49 10.1 56.3 1.9 8.2 11.6 3.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) FUSC PF04632.12 gi|330834360|ref|YP_004409088.1| - 0.62 8.5 6.3 0.65 8.5 0.8 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family DegS PF05384.11 gi|330834360|ref|YP_004409088.1| - 0.65 9.5 50.8 0.18 11.3 3.1 4.9 1 1 4 5 5 5 0 Sensor protein DegS Rogdi_lz PF10259.9 gi|330834360|ref|YP_004409088.1| - 0.82 9.1 13.0 1.8 8.0 1.9 3.0 1 1 1 2 2 2 0 Rogdi leucine zipper containing protein Golgin_A5 PF09787.9 gi|330834360|ref|YP_004409088.1| - 0.82 9.1 49.5 0.17 11.3 17.0 2.3 1 1 1 2 2 2 0 Golgin subfamily A member 5 Sec34 PF04136.15 gi|330834360|ref|YP_004409088.1| - 1 9.3 29.3 0.8 9.6 5.1 4.4 1 1 2 4 4 4 0 Sec34-like family Dak2 PF02734.17 gi|330834360|ref|YP_004409088.1| - 1.2 9.1 5.7 0.17 11.8 0.3 2.2 2 1 0 2 2 2 0 DAK2 domain DUF2937 PF11157.8 gi|330834360|ref|YP_004409088.1| - 1.2 8.8 3.3 0.93 9.2 0.4 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2937) EzrA PF06160.12 gi|330834360|ref|YP_004409088.1| - 2 6.5 49.6 0.13 10.4 15.5 2.5 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF4164 PF13747.6 gi|330834360|ref|YP_004409088.1| - 2.2 8.6 38.3 0.38 11.1 4.2 5.0 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) MSL1_dimer PF16801.5 gi|330834360|ref|YP_004409088.1| - 2.3 8.0 15.3 0.78 9.6 2.9 3.5 3 0 0 3 3 2 0 Dimerisation domain of Male-specific-Lethal 1 Exonuc_VII_L PF02601.15 gi|330834360|ref|YP_004409088.1| - 2.4 7.6 36.1 6.4 6.2 15.2 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|330834360|ref|YP_004409088.1| - 2.6 8.0 33.5 2.2 8.3 12.9 3.3 1 1 1 3 3 3 0 Laminin Domain II IFT57 PF10498.9 gi|330834360|ref|YP_004409088.1| - 2.7 6.9 44.5 0.44 9.5 11.7 3.0 1 1 1 3 3 3 0 Intra-flagellar transport protein 57 Corona_S2 PF01601.16 gi|330834360|ref|YP_004409088.1| - 2.9 6.3 5.6 0.74 8.2 1.8 1.8 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein NBP1 PF08537.10 gi|330834360|ref|YP_004409088.1| - 3.2 7.1 44.9 2.4 7.5 17.5 2.9 1 1 0 2 2 2 0 Fungal Nap binding protein NBP1 YPEB PF14620.6 gi|330834360|ref|YP_004409088.1| - 3.3 7.0 25.0 0.059 12.7 9.4 2.5 1 1 1 2 2 2 0 YpeB sporulation UPF0242 PF06785.11 gi|330834360|ref|YP_004409088.1| - 3.3 7.8 51.8 1.1 9.3 17.8 2.8 1 1 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus SLATT_4 PF18186.1 gi|330834360|ref|YP_004409088.1| - 3.3 7.3 20.1 0.67 9.6 2.4 3.7 1 1 1 3 3 3 0 SMODS and SLOG-associating 2TM effector domain family 4 Atg14 PF10186.9 gi|330834360|ref|YP_004409088.1| - 3.5 6.6 51.3 5 6.1 15.4 2.7 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 TolA_bind_tri PF16331.5 gi|330834360|ref|YP_004409088.1| - 4 7.6 28.2 0.25 11.5 6.9 4.8 4 3 1 5 5 4 0 TolA binding protein trimerisation FliD_C PF07195.12 gi|330834360|ref|YP_004409088.1| - 4.1 6.8 27.8 0.19 11.1 11.5 3.4 1 1 1 2 2 1 0 Flagellar hook-associated protein 2 C-terminus FAD-SLDH PF12318.8 gi|330834360|ref|YP_004409088.1| - 4.1 7.4 5.6 1.8 8.6 1.6 2.3 2 2 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Syntaxin_2 PF14523.6 gi|330834360|ref|YP_004409088.1| - 4.2 7.8 42.9 0.032 14.6 16.4 3.7 1 1 1 2 2 1 0 Syntaxin-like protein MAD PF05557.13 gi|330834360|ref|YP_004409088.1| - 5 5.4 53.0 2.4 6.4 30.5 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein HemX PF04375.14 gi|330834360|ref|YP_004409088.1| - 5 6.3 27.8 0.14 11.4 8.0 3.1 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase NPV_P10 PF05531.12 gi|330834360|ref|YP_004409088.1| - 5.3 7.6 17.8 6.8 7.2 6.3 4.3 2 2 1 3 3 3 0 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|330834360|ref|YP_004409088.1| - 5.6 7.7 43.4 4.8 7.9 5.0 4.5 1 1 3 4 4 3 0 Initiation control protein YabA Sulfatase_C PF14707.6 gi|330834360|ref|YP_004409088.1| - 5.9 7.6 9.2 15 6.3 0.3 3.4 2 1 1 3 3 3 0 C-terminal region of aryl-sulfatase TMPIT PF07851.13 gi|330834360|ref|YP_004409088.1| - 6.3 5.9 41.3 0.32 10.2 13.2 3.1 1 1 2 3 3 3 0 TMPIT-like protein DUF4795 PF16043.5 gi|330834360|ref|YP_004409088.1| - 8.1 6.0 43.2 2.5 7.7 12.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Phage_GPO PF05929.11 gi|330834360|ref|YP_004409088.1| - 8.8 5.9 29.6 15 5.1 6.1 3.2 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Lebercilin PF15619.6 gi|330834360|ref|YP_004409088.1| - 9.4 5.8 57.6 0.79 9.4 21.0 3.6 1 1 1 2 2 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF373 PF04123.13 gi|330834361|ref|YP_004409089.1| - 3.1e-81 273.4 16.4 3.8e-81 273.1 16.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) SRP54 PF00448.22 gi|330834361|ref|YP_004409089.1| - 0.022 14.4 0.2 0.036 13.7 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TBP PF00352.21 gi|330834362|ref|YP_004409090.1| - 2.4e-54 181.2 0.2 2.1e-30 104.5 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|330834362|ref|YP_004409090.1| - 1.2e-07 31.7 0.0 0.0075 16.4 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|330834362|ref|YP_004409090.1| - 0.004 17.9 0.1 0.014 16.2 0.1 1.9 1 1 1 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein NMT1_3 PF16868.5 gi|330834362|ref|YP_004409090.1| - 0.057 12.8 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 NMT1-like family Goodbye PF17109.5 gi|330834362|ref|YP_004409090.1| - 0.15 12.5 0.1 3 8.3 0.0 2.1 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain DUF5622 PF18533.1 gi|330834363|ref|YP_004409091.1| - 1e-20 73.6 7.1 1.2e-20 73.5 7.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) RNA_pol_Rpc34 PF05158.12 gi|330834364|ref|YP_004409092.1| - 6e-09 35.7 7.9 1.7e-05 24.4 3.7 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit MarR PF01047.22 gi|330834364|ref|YP_004409092.1| - 4.8e-06 26.4 0.7 1e-05 25.4 0.4 1.7 1 1 1 2 2 2 1 MarR family B-block_TFIIIC PF04182.12 gi|330834364|ref|YP_004409092.1| - 8.5e-06 25.8 0.3 1.2e-05 25.4 0.3 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_24 PF13412.6 gi|330834364|ref|YP_004409092.1| - 1.5e-05 24.5 0.3 3e-05 23.5 0.3 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|330834364|ref|YP_004409092.1| - 0.0023 17.7 0.8 0.0031 17.4 0.8 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_3 PF01381.22 gi|330834364|ref|YP_004409092.1| - 0.0025 17.8 0.9 0.005 16.9 0.5 1.7 1 1 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|330834364|ref|YP_004409092.1| - 0.0028 17.5 0.0 0.0041 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.6 gi|330834364|ref|YP_004409092.1| - 0.01 15.8 0.1 0.024 14.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330834364|ref|YP_004409092.1| - 0.011 15.7 0.1 0.016 15.2 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|330834364|ref|YP_004409092.1| - 0.014 16.1 0.1 0.027 15.1 0.1 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_11 PF08279.12 gi|330834364|ref|YP_004409092.1| - 0.015 15.3 0.4 0.026 14.4 0.4 1.6 1 1 0 1 1 1 0 HTH domain CENP-B_N PF04218.13 gi|330834364|ref|YP_004409092.1| - 0.026 14.2 0.2 0.047 13.3 0.2 1.6 1 1 0 1 1 1 0 CENP-B N-terminal DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|330834364|ref|YP_004409092.1| - 0.07 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Phage_rep_O PF04492.13 gi|330834364|ref|YP_004409092.1| - 0.083 13.5 3.2 0.14 12.7 0.4 2.2 1 1 1 2 2 2 0 Bacteriophage replication protein O MqsR_toxin PF15723.5 gi|330834364|ref|YP_004409092.1| - 0.086 13.2 0.1 0.11 12.9 0.1 1.1 1 0 0 1 1 1 0 Motility quorum-sensing regulator, toxin of MqsA Rio2_N PF09202.11 gi|330834364|ref|YP_004409092.1| - 0.11 12.8 0.2 0.16 12.2 0.2 1.4 1 1 0 1 1 1 0 Rio2, N-terminal SelB-wing_2 PF09106.11 gi|330834364|ref|YP_004409092.1| - 0.22 11.7 0.3 0.96 9.7 0.3 2.0 1 1 0 1 1 1 0 Elongation factor SelB, winged helix TRM PF02005.16 gi|330834365|ref|YP_004409093.1| - 1.9e-93 313.7 0.0 2.1e-93 313.5 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Met_10 PF02475.16 gi|330834365|ref|YP_004409093.1| - 4.6e-06 26.5 0.0 7.6e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein HypA PF01155.19 gi|330834365|ref|YP_004409093.1| - 0.0069 16.4 0.3 0.013 15.5 0.3 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TackOD1 PF18551.1 gi|330834365|ref|YP_004409093.1| - 0.01 15.6 1.6 0.019 14.7 1.6 1.3 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Methyltransf_31 PF13847.6 gi|330834365|ref|YP_004409093.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|330834365|ref|YP_004409093.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Lysine methyltransferase Zn-ribbon_8 PF09723.10 gi|330834365|ref|YP_004409093.1| - 0.075 13.2 4.8 0.15 12.2 4.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HTH_3 PF01381.22 gi|330834366|ref|YP_004409094.1| - 3.9e-13 49.2 0.1 3.6e-12 46.2 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|330834366|ref|YP_004409094.1| - 4.7e-07 30.1 0.0 3.4e-06 27.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|330834366|ref|YP_004409094.1| - 1.6e-05 24.8 0.1 7.4e-05 22.7 0.1 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|330834366|ref|YP_004409094.1| - 0.0021 18.5 0.0 0.0046 17.4 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MerR PF00376.23 gi|330834366|ref|YP_004409094.1| - 0.0059 16.3 0.0 0.017 14.9 0.0 1.8 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|330834366|ref|YP_004409094.1| - 0.022 14.9 0.0 0.083 13.0 0.0 2.1 1 0 0 1 1 1 0 MerR HTH family regulatory protein GP3_package PF16677.5 gi|330834366|ref|YP_004409094.1| - 0.057 13.5 1.1 0.76 9.9 0.0 2.8 2 1 1 3 3 3 0 DNA-packaging protein gp3 HTH_17 PF12728.7 gi|330834366|ref|YP_004409094.1| - 0.095 12.9 0.3 0.41 10.9 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF61 PF01886.16 gi|330834367|ref|YP_004409095.1| - 1.4e-21 76.8 0.1 1.7e-21 76.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 Fibrillarin PF01269.17 gi|330834368|ref|YP_004409096.1| - 2.9e-99 330.8 0.0 3.3e-99 330.6 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|330834368|ref|YP_004409096.1| - 0.0016 18.2 0.0 0.0029 17.4 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BBE PF08031.12 gi|330834368|ref|YP_004409096.1| - 0.057 13.5 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 Berberine and berberine like GCD14 PF08704.10 gi|330834368|ref|YP_004409096.1| - 0.18 11.5 0.0 0.38 10.4 0.0 1.5 1 1 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Nop PF01798.18 gi|330834369|ref|YP_004409097.1| - 3.6e-72 242.5 0.0 5e-72 242.1 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin YIEGIA PF14045.6 gi|330834369|ref|YP_004409097.1| - 0.067 12.0 0.1 0.24 10.2 0.0 1.8 2 0 0 2 2 2 0 YIEGIA protein Ribosomal_S30 PF04758.14 gi|330834370|ref|YP_004409098.1| - 3.8e-13 49.4 6.5 4.7e-13 49.1 6.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Sas10 PF09368.10 gi|330834370|ref|YP_004409098.1| - 0.22 12.0 5.9 0.33 11.5 5.9 1.3 1 1 0 1 1 1 0 Sas10 C-terminal domain Asparaginase PF00710.20 gi|330834371|ref|YP_004409099.1| - 9.1e-58 195.0 0.1 1.6e-57 194.2 0.1 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|330834371|ref|YP_004409099.1| - 2.7e-35 121.0 0.2 2e-34 118.2 0.0 2.2 2 1 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|330834371|ref|YP_004409099.1| - 6.6e-18 63.8 0.7 1.6e-17 62.5 0.7 1.7 1 0 0 1 1 1 1 GatD N-terminal domain DUF2187 PF09953.9 gi|330834371|ref|YP_004409099.1| - 0.029 14.3 0.1 0.078 13.0 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2187) MeMO_Hyd_G PF02964.16 gi|330834371|ref|YP_004409099.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Methane monooxygenase, hydrolase gamma chain GatB_N PF02934.15 gi|330834372|ref|YP_004409100.1| - 7.5e-67 225.6 0.0 1.1e-66 225.1 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|330834372|ref|YP_004409100.1| - 3.2e-26 92.0 1.5 6.8e-26 90.9 1.5 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|330834372|ref|YP_004409100.1| - 1.2e-13 51.1 0.1 4.3e-13 49.3 0.0 2.0 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|330834372|ref|YP_004409100.1| - 4.1e-06 26.9 3.9 1.5e-05 25.1 2.0 2.4 2 0 0 2 2 2 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|330834372|ref|YP_004409100.1| - 0.0055 16.7 2.6 0.017 15.1 2.6 1.9 1 1 0 1 1 1 1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Ctf8 PF09696.10 gi|330834372|ref|YP_004409100.1| - 0.0091 16.3 0.5 0.024 15.0 0.1 1.9 2 0 0 2 2 2 1 Ctf8 SAM_Ste50p PF09235.10 gi|330834372|ref|YP_004409100.1| - 0.043 14.1 0.3 3.9 7.8 0.1 3.3 3 0 0 3 3 3 0 Ste50p, sterile alpha motif CRM1_C PF08767.11 gi|330834372|ref|YP_004409100.1| - 0.13 11.5 0.4 0.21 10.7 0.4 1.5 1 1 0 1 1 1 0 CRM1 C terminal HTH_3 PF01381.22 gi|330834374|ref|YP_004409102.1| - 0.02 14.9 0.0 0.034 14.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Myb_DNA-binding PF00249.31 gi|330834374|ref|YP_004409102.1| - 0.024 14.8 0.0 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 Myb-like DNA-binding domain Ribonuc_red_lgC PF02867.15 gi|330834375|ref|YP_004409103.1| - 1.7e-189 630.7 0.0 2.2e-189 630.3 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|330834375|ref|YP_004409103.1| - 6e-28 96.7 0.2 2.1e-27 95.0 0.2 2.0 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|330834375|ref|YP_004409103.1| - 2.8e-09 37.4 1.8 7.6e-09 36.0 0.6 2.5 2 0 0 2 2 2 1 ATP cone domain tRNA-synt_1d PF00750.19 gi|330834376|ref|YP_004409104.1| - 3.5e-32 111.7 0.3 6.8e-15 54.9 0.2 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|330834376|ref|YP_004409104.1| - 9.8e-30 103.2 0.1 2.4e-29 101.9 0.1 1.7 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1g PF09334.11 gi|330834376|ref|YP_004409104.1| - 0.00051 18.9 0.1 0.0099 14.7 0.1 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|330834376|ref|YP_004409104.1| - 0.0046 15.3 0.0 0.23 9.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.18 gi|330834376|ref|YP_004409104.1| - 0.14 11.1 1.2 2.6 6.9 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (K) RE_AccI PF09545.10 gi|330834377|ref|YP_004409105.1| - 0.038 13.0 0.0 0.038 13.0 0.0 1.0 1 0 0 1 1 1 0 AccI restriction endonuclease Clathrin PF00637.20 gi|330834379|ref|YP_004409107.1| - 0.035 14.0 0.1 0.044 13.7 0.1 1.1 1 0 0 1 1 1 0 Region in Clathrin and VPS Cpn60_TCP1 PF00118.24 gi|330834381|ref|YP_004409109.1| - 2.2e-174 580.7 14.0 2.5e-174 580.5 14.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family GLF PF03275.13 gi|330834381|ref|YP_004409109.1| - 0.14 11.8 0.1 0.27 10.9 0.1 1.3 1 0 0 1 1 1 0 UDP-galactopyranose mutase zf-FPG_IleRS PF06827.14 gi|330834382|ref|YP_004409110.1| - 3 7.8 5.6 25 4.9 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HTH_45 PF14947.6 gi|330834384|ref|YP_004409112.1| - 0.00085 19.3 0.0 0.0023 17.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix GAD-like PF08887.11 gi|330834384|ref|YP_004409112.1| - 0.024 14.4 0.0 0.041 13.6 0.0 1.3 1 0 0 1 1 1 0 GAD-like domain NAD_kinase PF01513.21 gi|330834385|ref|YP_004409113.1| - 2.7e-61 207.3 0.0 3e-61 207.2 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|330834385|ref|YP_004409113.1| - 0.00019 21.0 0.1 0.00068 19.3 0.0 1.9 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|330834385|ref|YP_004409113.1| - 0.012 14.9 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphofructokinase PaaX PF07848.12 gi|330834386|ref|YP_004409114.1| - 0.0056 16.9 0.2 0.015 15.5 0.2 1.7 1 0 0 1 1 1 1 PaaX-like protein HTH_45 PF14947.6 gi|330834386|ref|YP_004409114.1| - 0.006 16.6 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4093 PF13331.6 gi|330834386|ref|YP_004409114.1| - 0.011 16.1 0.0 0.023 15.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4093) Fe_dep_repress PF01325.19 gi|330834386|ref|YP_004409114.1| - 0.011 15.9 0.0 0.02 15.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF4443 PF14544.6 gi|330834386|ref|YP_004409114.1| - 0.016 15.4 0.0 0.026 14.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) Ribosomal_S19e PF01090.19 gi|330834386|ref|YP_004409114.1| - 0.05 13.3 0.1 0.078 12.7 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e MarR PF01047.22 gi|330834386|ref|YP_004409114.1| - 0.06 13.3 0.1 0.12 12.3 0.1 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|330834386|ref|YP_004409114.1| - 0.068 13.1 0.1 0.14 12.2 0.1 1.6 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|330834386|ref|YP_004409114.1| - 0.099 13.2 0.1 0.18 12.3 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain RP-C PF03428.13 gi|330834386|ref|YP_004409114.1| - 0.13 11.9 0.2 0.25 11.0 0.2 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain OTCace PF00185.24 gi|330834387|ref|YP_004409115.1| - 1.1e-50 171.8 0.0 1.5e-50 171.3 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|330834387|ref|YP_004409115.1| - 4.7e-44 150.0 0.0 6.6e-44 149.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ribosomal_S21 PF01165.20 gi|330834387|ref|YP_004409115.1| - 0.019 14.7 1.3 0.86 9.4 0.1 2.8 3 0 0 3 3 3 0 Ribosomal protein S21 Nre_N PF04894.12 gi|330834388|ref|YP_004409116.1| - 3.9e-93 312.2 0.2 4.8e-93 311.9 0.2 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|330834388|ref|YP_004409116.1| - 4.6e-30 103.8 0.0 8.1e-30 103.0 0.0 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal WSN PF02206.18 gi|330834388|ref|YP_004409116.1| - 0.029 14.3 0.2 0.37 10.7 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF5118 PF17162.4 gi|330834388|ref|YP_004409116.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF5118) PHP_C PF13263.6 gi|330834389|ref|YP_004409117.1| - 7e-12 44.9 0.0 1.2e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|330834389|ref|YP_004409117.1| - 0.0045 17.3 0.1 0.0073 16.6 0.1 1.7 1 1 0 1 1 1 1 PHP domain Semialdhyde_dh PF01118.24 gi|330834390|ref|YP_004409118.1| - 8e-32 110.2 0.0 1.2e-31 109.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|330834390|ref|YP_004409118.1| - 2.2e-26 93.1 0.0 3.4e-26 92.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain AA_kinase PF00696.28 gi|330834391|ref|YP_004409119.1| - 2e-43 148.7 0.2 2.9e-43 148.2 0.2 1.2 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|330834391|ref|YP_004409119.1| - 0.0096 15.7 2.2 0.021 14.6 0.2 2.7 3 0 0 3 3 3 1 ACT domain ACT PF01842.25 gi|330834391|ref|YP_004409119.1| - 0.011 15.5 0.4 0.048 13.4 0.1 2.3 3 0 0 3 3 3 0 ACT domain T2SSM PF04612.12 gi|330834391|ref|YP_004409119.1| - 0.12 12.5 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein M PALP PF00291.25 gi|330834392|ref|YP_004409120.1| - 1.4e-72 244.6 2.1 1.6e-72 244.4 2.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PK_C PF02887.16 gi|330834392|ref|YP_004409120.1| - 0.008 16.4 0.8 0.36 11.1 0.1 2.4 2 0 0 2 2 2 2 Pyruvate kinase, alpha/beta domain UbiD PF01977.16 gi|330834393|ref|YP_004409121.1| - 6.2e-126 420.5 0.0 7.2e-126 420.3 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Snf7 PF03357.21 gi|330834395|ref|YP_004409123.1| - 2.8e-06 27.0 6.5 4.2e-06 26.5 6.5 1.3 1 1 0 1 1 1 1 Snf7 DivIVA PF05103.13 gi|330834395|ref|YP_004409123.1| - 0.00059 19.9 7.6 0.076 13.1 2.6 2.3 1 1 1 2 2 2 2 DivIVA protein LOH1CR12 PF10158.9 gi|330834395|ref|YP_004409123.1| - 0.0026 17.8 2.2 0.0088 16.1 0.9 2.2 1 1 1 2 2 2 1 Tumour suppressor protein RPW8 PF05659.11 gi|330834395|ref|YP_004409123.1| - 0.15 11.8 3.0 0.32 10.7 1.9 2.2 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF5082 PF16888.5 gi|330834395|ref|YP_004409123.1| - 0.43 10.9 4.8 64 3.8 2.4 3.2 2 1 0 2 2 2 0 Domain of unknown function (DUF5082) PPDK_N PF01326.19 gi|330834396|ref|YP_004409124.1| - 9e-116 386.7 0.1 1.3e-115 386.2 0.1 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|330834396|ref|YP_004409124.1| - 8.5e-81 271.3 0.0 1.2e-80 270.7 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|330834396|ref|YP_004409124.1| - 2.2e-28 97.8 1.0 5.7e-28 96.4 1.0 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Inos-1-P_synth PF01658.17 gi|330834397|ref|YP_004409125.1| - 9.4e-31 106.3 0.0 1.6e-30 105.6 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase Acylphosphatase PF00708.18 gi|330834398|ref|YP_004409126.1| - 9.5e-27 93.2 0.0 1.2e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 Acylphosphatase PALP PF00291.25 gi|330834400|ref|YP_004409128.1| - 4.5e-44 151.0 0.0 6.2e-44 150.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Trp_syntA PF00290.20 gi|330834401|ref|YP_004409129.1| - 1e-32 113.1 0.0 1.2e-32 112.8 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|330834401|ref|YP_004409129.1| - 1.5e-05 24.5 0.2 7.6e-05 22.3 0.2 2.0 2 0 0 2 2 2 1 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|330834401|ref|YP_004409129.1| - 0.011 15.1 0.0 0.024 14.0 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase Ribul_P_3_epim PF00834.19 gi|330834401|ref|YP_004409129.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family FMN_dh PF01070.18 gi|330834401|ref|YP_004409129.1| - 0.019 14.0 0.2 0.05 12.6 0.2 1.6 2 0 0 2 2 2 0 FMN-dependent dehydrogenase PcrB PF01884.17 gi|330834401|ref|YP_004409129.1| - 0.032 13.7 0.3 0.18 11.3 0.3 2.1 2 1 1 3 3 3 0 PcrB family NMO PF03060.15 gi|330834401|ref|YP_004409129.1| - 0.073 12.4 0.1 0.19 11.1 0.1 1.7 2 0 0 2 2 2 0 Nitronate monooxygenase PucR PF07905.11 gi|330834401|ref|YP_004409129.1| - 0.089 13.1 0.0 3.5 7.9 0.0 3.1 3 1 1 4 4 4 0 Purine catabolism regulatory protein-like family Amidohydro_3 PF07969.11 gi|330834401|ref|YP_004409129.1| - 0.21 11.0 0.0 0.26 10.7 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family Glycos_transf_3 PF00591.21 gi|330834402|ref|YP_004409130.1| - 1.1e-69 234.8 0.0 1.5e-69 234.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|330834402|ref|YP_004409130.1| - 3.5e-18 65.2 0.0 7.8e-18 64.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain PRAI PF00697.22 gi|330834403|ref|YP_004409131.1| - 1.9e-20 73.5 0.0 2.2e-20 73.3 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.18 gi|330834404|ref|YP_004409132.1| - 2.2e-96 322.4 0.0 2.7e-96 322.1 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|330834404|ref|YP_004409132.1| - 7.2e-18 65.2 0.0 8.4e-16 58.5 0.0 2.9 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|330834405|ref|YP_004409133.1| - 1e-46 159.1 0.0 1.1e-46 159.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330834405|ref|YP_004409133.1| - 3.8e-11 43.1 0.0 6.1e-11 42.5 0.0 1.4 1 1 0 1 1 1 1 Peptidase C26 IGPS PF00218.21 gi|330834406|ref|YP_004409134.1| - 2.9e-72 242.9 0.0 3.3e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|330834406|ref|YP_004409134.1| - 2.6e-06 27.1 0.1 0.00025 20.6 0.0 2.2 1 1 1 2 2 2 2 Histidine biosynthesis protein NMO PF03060.15 gi|330834406|ref|YP_004409134.1| - 4.4e-06 26.3 0.0 0.011 15.1 0.0 2.4 2 1 0 2 2 2 2 Nitronate monooxygenase NanE PF04131.14 gi|330834406|ref|YP_004409134.1| - 0.006 15.8 0.0 0.023 13.9 0.0 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|330834406|ref|YP_004409134.1| - 0.008 15.5 0.0 0.48 9.7 0.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Aminotran_1_2 PF00155.21 gi|330834407|ref|YP_004409135.1| - 4.9e-69 233.2 0.0 5.6e-69 233.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|330834407|ref|YP_004409135.1| - 1.6e-06 27.7 0.0 2e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|330834407|ref|YP_004409135.1| - 0.043 12.3 0.0 0.067 11.7 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme tRNA-synt_1 PF00133.22 gi|330834408|ref|YP_004409136.1| - 4e-121 405.2 0.0 6.1e-120 401.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330834408|ref|YP_004409136.1| - 3e-30 105.2 3.0 4.2e-30 104.7 1.4 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|330834408|ref|YP_004409136.1| - 1.1e-21 77.0 0.0 1.7e-09 36.9 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|330834408|ref|YP_004409136.1| - 0.00017 21.2 0.0 0.0091 15.5 0.0 2.8 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|330834408|ref|YP_004409136.1| - 0.00038 19.9 0.0 0.066 12.5 0.0 2.5 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain POTRA PF07244.15 gi|330834408|ref|YP_004409136.1| - 0.059 14.0 0.0 0.3 11.7 0.0 2.2 2 0 0 2 2 2 0 Surface antigen variable number repeat NAD_binding_8 PF13450.6 gi|330834409|ref|YP_004409137.1| - 3.7e-05 23.9 0.0 7.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|330834409|ref|YP_004409137.1| - 0.023 14.4 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|330834409|ref|YP_004409137.1| - 0.043 13.7 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|330834409|ref|YP_004409137.1| - 0.12 12.9 0.0 0.32 11.6 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|330834409|ref|YP_004409137.1| - 0.13 11.5 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Prok-RING_1 PF14446.6 gi|330834413|ref|YP_004409141.1| - 7.3e-05 22.6 5.1 0.0011 18.8 1.9 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|330834413|ref|YP_004409141.1| - 0.011 15.7 6.2 0.62 10.1 5.8 2.2 1 1 1 2 2 2 0 Double zinc ribbon zf-H2C2_2 PF13465.6 gi|330834413|ref|YP_004409141.1| - 0.015 15.7 9.8 0.16 12.5 1.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain zf-TFIIB PF13453.6 gi|330834413|ref|YP_004409141.1| - 0.02 14.2 5.7 1.4 8.3 0.2 3.1 3 0 0 3 3 3 0 Transcription factor zinc-finger DUF4379 PF14311.6 gi|330834413|ref|YP_004409141.1| - 0.02 15.2 4.8 0.02 15.2 4.8 1.7 1 1 1 2 2 2 0 Probable Zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|330834413|ref|YP_004409141.1| - 0.038 14.0 7.0 0.13 12.3 2.2 2.3 1 1 1 2 2 2 0 zinc-ribbons Anti-TRAP PF15777.5 gi|330834413|ref|YP_004409141.1| - 0.07 13.1 0.8 0.07 13.1 0.8 2.1 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein zf-C2HC5 PF06221.13 gi|330834413|ref|YP_004409141.1| - 0.11 12.5 6.3 0.44 10.6 2.2 2.6 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.11 gi|330834413|ref|YP_004409141.1| - 0.19 11.8 7.9 0.73 10.0 7.9 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) C1_2 PF03107.16 gi|330834413|ref|YP_004409141.1| - 0.21 11.9 8.1 0.092 13.1 3.0 2.2 1 1 1 2 2 2 0 C1 domain HypA PF01155.19 gi|330834413|ref|YP_004409141.1| - 0.37 10.8 6.5 0.74 9.9 2.3 1.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|330834413|ref|YP_004409141.1| - 0.4 10.6 12.3 41 4.1 0.4 2.8 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2_4 PF13894.6 gi|330834413|ref|YP_004409141.1| - 0.47 11.4 13.0 21 6.3 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zinc_ribbon_9 PF14369.6 gi|330834413|ref|YP_004409141.1| - 0.8 10.0 7.8 3 8.2 0.9 2.5 2 1 0 2 2 2 0 zinc-ribbon ADK_lid PF05191.14 gi|330834413|ref|YP_004409141.1| - 0.83 9.7 9.8 1.1 9.3 6.4 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 gi|330834413|ref|YP_004409141.1| - 0.94 9.4 9.9 8.7 6.3 2.7 3.1 3 0 0 3 3 3 0 SprT-like zinc ribbon domain DiS_P_DiS PF06750.13 gi|330834413|ref|YP_004409141.1| - 1 9.5 5.1 16 5.7 0.0 2.9 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-C2H2_6 PF13912.6 gi|330834413|ref|YP_004409141.1| - 1.1 9.4 12.0 8.5 6.5 0.2 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 gi|330834413|ref|YP_004409141.1| - 1.4 9.1 10.3 5.5 7.2 7.0 2.2 1 1 1 2 2 2 0 Zinc ribbon domain zf-AN1 PF01428.16 gi|330834413|ref|YP_004409141.1| - 1.6 8.9 11.9 12 6.2 5.8 2.8 1 1 1 2 2 2 0 AN1-like Zinc finger zinc_ribbon_5 PF13719.6 gi|330834413|ref|YP_004409141.1| - 1.7 8.4 8.9 1 9.2 4.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain FANCL_C PF11793.8 gi|330834413|ref|YP_004409141.1| - 1.9 8.7 10.6 1.2 9.4 0.2 2.8 2 1 0 2 2 2 0 FANCL C-terminal domain HalOD2 PF18547.1 gi|330834413|ref|YP_004409141.1| - 2.3 8.2 6.2 5.1 7.1 0.1 2.6 2 1 1 3 3 3 0 Halobacterial output domain 2 TF_Zn_Ribbon PF08271.12 gi|330834413|ref|YP_004409141.1| - 2.3 7.8 11.3 7.2 6.2 0.6 3.1 3 0 0 3 3 3 0 TFIIB zinc-binding Mu-like_Com PF10122.9 gi|330834413|ref|YP_004409141.1| - 2.3 7.7 9.2 1.7 8.1 3.4 2.3 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF1610 PF07754.11 gi|330834413|ref|YP_004409141.1| - 2.3 8.2 7.7 13 5.8 2.5 3.2 2 2 1 3 3 3 0 Domain of unknown function (DUF1610) zinc_ribbon_4 PF13717.6 gi|330834413|ref|YP_004409141.1| - 2.6 8.0 14.5 9.7 6.2 8.8 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|330834413|ref|YP_004409141.1| - 2.8 8.3 12.7 5.9 7.3 0.4 3.2 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-LITAF-like PF10601.9 gi|330834413|ref|YP_004409141.1| - 3.1 8.1 11.3 6.8 7.0 0.6 3.0 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain zf-C2H2 PF00096.26 gi|330834413|ref|YP_004409141.1| - 3.2 8.4 15.8 32 5.3 5.4 3.2 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-B_box PF00643.24 gi|330834413|ref|YP_004409141.1| - 3.3 7.9 11.0 20 5.5 7.9 2.8 2 1 0 2 2 2 0 B-box zinc finger TFIIS_C PF01096.18 gi|330834413|ref|YP_004409141.1| - 3.7 7.5 10.3 0.91 9.4 0.9 3.0 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) Ribosomal_S27e PF01667.17 gi|330834413|ref|YP_004409141.1| - 3.8 7.3 10.3 12 5.7 0.1 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 zf-BED PF02892.15 gi|330834413|ref|YP_004409141.1| - 4.9 7.2 12.3 6.1 7.0 1.5 3.0 1 1 2 3 3 3 0 BED zinc finger zf-C2HC_2 PF13913.6 gi|330834413|ref|YP_004409141.1| - 5.3 7.0 15.1 2.3 8.2 0.4 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-HIT PF04438.16 gi|330834413|ref|YP_004409141.1| - 6.3 6.8 17.4 40 4.2 11.4 3.1 2 1 0 2 2 2 0 HIT zinc finger zf-ribbon_3 PF13248.6 gi|330834413|ref|YP_004409141.1| - 8.1 6.0 12.1 3.1 7.3 0.3 3.0 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330834413|ref|YP_004409141.1| - 8.9 6.2 16.0 2.7 7.8 0.4 3.5 3 1 0 3 3 3 0 zinc-ribbon domain 2-Hacid_dh_C PF02826.19 gi|330834416|ref|YP_004409144.1| - 4.3e-47 159.8 0.3 6.8e-47 159.1 0.3 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|330834416|ref|YP_004409144.1| - 1.4e-36 125.2 0.7 1.6e-36 125.0 0.7 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|330834416|ref|YP_004409144.1| - 4.2e-05 23.8 1.8 4.2e-05 23.8 1.8 2.1 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|330834416|ref|YP_004409144.1| - 7e-05 22.9 2.4 7e-05 22.9 2.4 1.9 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IlvN PF07991.12 gi|330834416|ref|YP_004409144.1| - 0.018 14.6 0.3 0.041 13.5 0.3 1.6 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NMT1 PF09084.11 gi|330834416|ref|YP_004409144.1| - 0.045 13.7 1.2 1.3 9.0 0.2 2.4 2 1 0 2 2 2 0 NMT1/THI5 like Aminotran_5 PF00266.19 gi|330834417|ref|YP_004409145.1| - 4.7e-25 88.3 0.0 6.2e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|330834417|ref|YP_004409145.1| - 3.2e-05 22.7 0.1 4.5e-05 22.1 0.1 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|330834417|ref|YP_004409145.1| - 0.00056 19.2 0.0 0.00078 18.7 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|330834417|ref|YP_004409145.1| - 0.064 12.5 0.0 0.17 11.1 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|330834417|ref|YP_004409145.1| - 0.098 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family AAA PF00004.29 gi|330834419|ref|YP_004409147.1| - 3.4e-40 137.5 0.0 2.6e-39 134.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|330834419|ref|YP_004409147.1| - 2.5e-09 37.1 2.5 6.8e-09 35.7 2.5 1.8 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_2 PF07724.14 gi|330834419|ref|YP_004409147.1| - 5.2e-09 36.4 0.1 1.4e-08 35.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) AAA_lid_3 PF17862.1 gi|330834419|ref|YP_004409147.1| - 7.1e-09 35.3 0.1 2.3e-08 33.7 0.0 2.0 2 0 0 2 2 1 1 AAA+ lid domain RuvB_N PF05496.12 gi|330834419|ref|YP_004409147.1| - 7.2e-08 32.3 0.0 4.1e-07 29.9 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Vps4_C PF09336.10 gi|330834419|ref|YP_004409147.1| - 2.9e-07 30.4 1.9 6.3e-07 29.3 0.1 2.5 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_5 PF07728.14 gi|330834419|ref|YP_004409147.1| - 5e-07 29.8 0.0 3.2e-06 27.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|330834419|ref|YP_004409147.1| - 7.8e-07 29.4 0.0 4.6e-05 23.7 0.0 2.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330834419|ref|YP_004409147.1| - 3.2e-06 27.6 0.0 0.001 19.5 0.0 2.8 1 1 2 3 3 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|330834419|ref|YP_004409147.1| - 6.6e-06 26.2 0.0 3.7e-05 23.8 0.0 2.2 2 1 1 3 3 2 1 AAA domain ABC_tran PF00005.27 gi|330834419|ref|YP_004409147.1| - 8.7e-06 26.3 0.0 0.0073 16.8 0.0 2.3 2 0 0 2 2 2 1 ABC transporter TIP49 PF06068.13 gi|330834419|ref|YP_004409147.1| - 0.00014 21.2 0.0 0.00026 20.3 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_24 PF13479.6 gi|330834419|ref|YP_004409147.1| - 0.00015 21.5 0.0 0.00036 20.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|330834419|ref|YP_004409147.1| - 0.0002 21.3 1.3 0.26 11.2 0.0 2.9 2 1 1 3 3 3 2 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|330834419|ref|YP_004409147.1| - 0.00022 21.6 0.1 0.0037 17.6 0.0 2.8 3 1 0 3 3 2 1 RNA helicase AAA_17 PF13207.6 gi|330834419|ref|YP_004409147.1| - 0.00065 20.1 0.1 0.0086 16.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|330834419|ref|YP_004409147.1| - 0.001 18.7 0.4 0.066 12.8 0.1 2.7 1 1 2 3 3 3 1 AAA domain Mg_chelatase PF01078.21 gi|330834419|ref|YP_004409147.1| - 0.0015 17.9 0.0 0.0034 16.8 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|330834419|ref|YP_004409147.1| - 0.0016 19.0 0.0 0.009 16.6 0.0 2.3 1 1 1 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|330834419|ref|YP_004409147.1| - 0.0018 18.1 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|330834419|ref|YP_004409147.1| - 0.0018 17.6 0.0 0.0067 15.7 0.0 1.9 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|330834419|ref|YP_004409147.1| - 0.0019 18.3 0.0 0.0052 17.0 0.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_7 PF12775.7 gi|330834419|ref|YP_004409147.1| - 0.0024 17.4 0.0 0.013 15.0 0.0 2.1 2 1 0 2 2 2 1 P-loop containing dynein motor region ResIII PF04851.15 gi|330834419|ref|YP_004409147.1| - 0.0038 17.3 0.0 0.015 15.3 0.0 2.0 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit TPR_11 PF13414.6 gi|330834419|ref|YP_004409147.1| - 0.0045 16.6 0.4 0.04 13.6 0.0 2.3 2 0 0 2 2 2 1 TPR repeat SKI PF01202.22 gi|330834419|ref|YP_004409147.1| - 0.0071 16.5 0.0 0.016 15.4 0.0 1.6 1 0 0 1 1 1 1 Shikimate kinase Bac_DnaA PF00308.18 gi|330834419|ref|YP_004409147.1| - 0.0076 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial dnaA protein KAP_NTPase PF07693.14 gi|330834419|ref|YP_004409147.1| - 0.011 15.0 0.0 0.76 8.9 0.0 2.3 1 1 1 2 2 2 0 KAP family P-loop domain IstB_IS21 PF01695.17 gi|330834419|ref|YP_004409147.1| - 0.013 15.3 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein Gp-FAR-1 PF05823.12 gi|330834419|ref|YP_004409147.1| - 0.016 15.5 0.9 0.57 10.5 0.1 2.5 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) TSNAXIP1_N PF15739.5 gi|330834419|ref|YP_004409147.1| - 0.017 15.5 0.7 0.048 14.1 0.3 1.9 2 0 0 2 2 1 0 Translin-associated factor X-interacting N-terminus DUF815 PF05673.13 gi|330834419|ref|YP_004409147.1| - 0.021 14.0 0.0 0.049 12.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TniB PF05621.11 gi|330834419|ref|YP_004409147.1| - 0.023 14.1 0.0 2.8 7.3 0.0 2.6 1 1 1 2 2 2 0 Bacterial TniB protein NACHT PF05729.12 gi|330834419|ref|YP_004409147.1| - 0.023 14.6 0.0 0.054 13.4 0.0 1.7 1 1 0 1 1 1 0 NACHT domain Cytidylate_kin2 PF13189.6 gi|330834419|ref|YP_004409147.1| - 0.029 14.5 0.1 0.095 12.8 0.0 1.9 2 0 0 2 2 1 0 Cytidylate kinase-like family ATP-synt_ab PF00006.25 gi|330834419|ref|YP_004409147.1| - 0.039 13.6 0.0 0.074 12.7 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NB-ARC PF00931.22 gi|330834419|ref|YP_004409147.1| - 0.047 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain CPT PF07931.12 gi|330834419|ref|YP_004409147.1| - 0.049 13.5 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Sigma54_activat PF00158.26 gi|330834419|ref|YP_004409147.1| - 0.05 13.3 0.0 0.14 11.8 0.0 1.7 2 1 0 2 2 1 0 Sigma-54 interaction domain TPR_6 PF13174.6 gi|330834419|ref|YP_004409147.1| - 0.053 14.2 0.8 0.52 11.1 0.1 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat Rad17 PF03215.15 gi|330834419|ref|YP_004409147.1| - 0.055 13.4 0.0 0.18 11.7 0.0 1.7 1 1 0 1 1 1 0 Rad17 P-loop domain Parvo_NS1 PF01057.17 gi|330834419|ref|YP_004409147.1| - 0.064 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|330834419|ref|YP_004409147.1| - 0.065 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|330834419|ref|YP_004409147.1| - 0.091 13.0 0.0 0.23 11.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain TPR_1 PF00515.28 gi|330834419|ref|YP_004409147.1| - 0.1 12.5 0.0 0.48 10.3 0.0 2.2 2 0 0 2 2 1 0 Tetratricopeptide repeat AAA_11 PF13086.6 gi|330834419|ref|YP_004409147.1| - 0.12 12.1 0.0 0.51 10.1 0.0 1.9 1 1 1 2 2 2 0 AAA domain GBP_repeat PF02526.14 gi|330834419|ref|YP_004409147.1| - 0.57 10.0 1.8 1.9 8.3 0.0 2.6 3 0 0 3 3 3 0 Glycophorin-binding protein Snf7 PF03357.21 gi|330834420|ref|YP_004409148.1| - 0.00044 19.9 5.6 0.00044 19.9 5.6 2.2 2 1 0 2 2 2 1 Snf7 TrmB PF01978.19 gi|330834420|ref|YP_004409148.1| - 0.00046 20.0 0.5 0.0049 16.7 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_GP20 PF06810.11 gi|330834420|ref|YP_004409148.1| - 0.045 13.5 2.8 0.13 12.0 0.8 2.5 2 0 0 2 2 2 0 Phage minor structural protein GP20 GntR PF00392.21 gi|330834420|ref|YP_004409148.1| - 0.061 13.0 0.1 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|330834420|ref|YP_004409148.1| - 0.11 13.0 1.1 2.1 8.9 0.0 2.8 2 1 1 3 3 3 0 Winged helix DNA-binding domain CdvA PF18822.1 gi|330834421|ref|YP_004409149.1| - 1.7e-34 118.3 15.0 2.7e-34 117.6 15.0 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain Cas_DxTHG PF09455.10 gi|330834421|ref|YP_004409149.1| - 0.014 15.0 0.7 0.015 14.9 0.7 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family PRC PF05239.16 gi|330834421|ref|YP_004409149.1| - 0.019 15.1 0.3 0.041 14.0 0.3 1.5 1 0 0 1 1 1 0 PRC-barrel domain FliT PF05400.13 gi|330834421|ref|YP_004409149.1| - 0.042 14.7 2.8 0.098 13.5 2.8 1.6 1 0 0 1 1 1 0 Flagellar protein FliT Golgin_A5 PF09787.9 gi|330834421|ref|YP_004409149.1| - 0.05 13.1 8.8 0.046 13.2 7.4 1.4 1 1 0 1 1 1 0 Golgin subfamily A member 5 Mt_ATP-synt_D PF05873.12 gi|330834421|ref|YP_004409149.1| - 0.15 11.9 6.2 0.1 12.4 4.6 1.6 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) Nitrate_red_del PF02613.15 gi|330834421|ref|YP_004409149.1| - 0.16 12.0 0.2 0.36 10.9 0.1 1.7 1 1 0 1 1 1 0 Nitrate reductase delta subunit Syntaxin-6_N PF09177.11 gi|330834421|ref|YP_004409149.1| - 0.3 11.7 3.1 0.75 10.4 3.1 1.8 1 1 0 1 1 1 0 Syntaxin 6, N-terminal MtrG PF04210.13 gi|330834421|ref|YP_004409149.1| - 0.54 10.1 5.7 7.6 6.5 0.1 3.6 3 1 1 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G UPF0242 PF06785.11 gi|330834421|ref|YP_004409149.1| - 0.57 10.3 8.3 0.4 10.7 6.4 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Enkurin PF13864.6 gi|330834421|ref|YP_004409149.1| - 1.5 9.3 10.2 0.9 10.0 6.5 2.1 2 0 0 2 2 2 0 Calmodulin-binding YojJ PF10372.9 gi|330834421|ref|YP_004409149.1| - 2 8.6 5.1 0.52 10.4 0.5 2.5 3 1 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus L31 PF09784.9 gi|330834421|ref|YP_004409149.1| - 2.3 8.7 6.0 0.51 10.8 0.9 2.1 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 RRP36 PF06102.12 gi|330834421|ref|YP_004409149.1| - 2.6 8.0 13.2 11 6.0 13.4 1.7 1 1 0 1 1 1 0 rRNA biogenesis protein RRP36 PBP_N PF17093.5 gi|330834422|ref|YP_004409150.1| - 0.13 12.5 0.3 0.16 12.2 0.3 1.2 1 0 0 1 1 1 0 Penicillin-binding protein N-terminus COX7a PF02238.15 gi|330834422|ref|YP_004409150.1| - 0.14 12.6 0.8 0.14 12.6 0.8 1.8 2 0 0 2 2 2 0 Cytochrome c oxidase subunit VII CytB6-F_Fe-S PF08802.10 gi|330834422|ref|YP_004409150.1| - 0.21 11.7 0.2 0.21 11.7 0.2 2.5 2 1 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit DUF3522 PF12036.8 gi|330834422|ref|YP_004409150.1| - 0.24 11.7 2.9 0.26 11.6 2.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3522) Brr6_like_C_C PF10104.9 gi|330834422|ref|YP_004409150.1| - 0.39 10.5 4.6 0.45 10.3 0.3 2.1 2 0 0 2 2 2 0 Di-sulfide bridge nucleocytoplasmic transport domain EMP70 PF02990.16 gi|330834422|ref|YP_004409150.1| - 0.58 8.8 4.6 0.63 8.6 4.6 1.0 1 0 0 1 1 1 0 Endomembrane protein 70 Tetraspanin PF00335.20 gi|330834422|ref|YP_004409150.1| - 0.63 9.7 6.2 0.73 9.5 6.2 1.1 1 0 0 1 1 1 0 Tetraspanin family Insulin_TMD PF17870.1 gi|330834422|ref|YP_004409150.1| - 2.5 8.2 8.5 0.26 11.4 0.3 2.3 2 0 0 2 2 2 0 Insulin receptor trans-membrane segment TssO PF17561.2 gi|330834422|ref|YP_004409150.1| - 5.1 7.2 6.0 24 5.0 0.0 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssO DUF2207 PF09972.9 gi|330834422|ref|YP_004409150.1| - 7.9 5.1 5.8 8.1 5.1 5.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) SLATT_6 PF18169.1 gi|330834422|ref|YP_004409150.1| - 9.8 5.7 6.3 2.9 7.5 0.4 2.0 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 6 Enolase_C PF00113.22 gi|330834423|ref|YP_004409151.1| - 1.8e-92 309.8 0.1 2.5e-92 309.3 0.1 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|330834423|ref|YP_004409151.1| - 5.7e-38 130.1 0.1 8.9e-38 129.4 0.1 1.3 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|330834423|ref|YP_004409151.1| - 0.00011 21.9 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like Zn-ribbon_8 PF09723.10 gi|330834424|ref|YP_004409152.1| - 8.8e-05 22.5 1.0 0.24 11.5 0.0 2.3 2 0 0 2 2 2 2 Zinc ribbon domain DZR PF12773.7 gi|330834424|ref|YP_004409152.1| - 9.2e-05 22.4 0.1 0.00015 21.7 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330834424|ref|YP_004409152.1| - 0.00019 20.7 4.0 0.13 11.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|330834424|ref|YP_004409152.1| - 0.00074 19.5 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 CpXC protein TF_Zn_Ribbon PF08271.12 gi|330834424|ref|YP_004409152.1| - 0.00092 18.7 1.3 0.67 9.5 0.1 2.4 2 0 0 2 2 2 2 TFIIB zinc-binding UPF0547 PF10571.9 gi|330834424|ref|YP_004409152.1| - 0.001 19.1 3.5 0.11 12.6 0.4 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.11 gi|330834424|ref|YP_004409152.1| - 0.0013 18.6 0.5 1.6 8.7 0.0 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.6 gi|330834424|ref|YP_004409152.1| - 0.002 17.8 7.2 0.084 12.6 0.5 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|330834424|ref|YP_004409152.1| - 0.0025 17.7 2.1 0.038 14.0 2.6 2.0 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Nudix_N_2 PF14803.6 gi|330834424|ref|YP_004409152.1| - 0.0033 17.3 0.8 2 8.4 0.1 2.4 2 0 0 2 2 2 2 Nudix N-terminal DUF4379 PF14311.6 gi|330834424|ref|YP_004409152.1| - 0.0033 17.8 1.8 0.016 15.6 0.1 2.2 2 0 0 2 2 2 1 Probable Zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|330834424|ref|YP_004409152.1| - 0.004 16.9 0.2 0.73 9.6 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain TFIIS_C PF01096.18 gi|330834424|ref|YP_004409152.1| - 0.0052 16.6 3.4 0.026 14.4 0.2 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.6 gi|330834424|ref|YP_004409152.1| - 0.006 17.2 0.5 3.1 8.5 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Cys_rich_CPXG PF14255.6 gi|330834424|ref|YP_004409152.1| - 0.0078 16.1 0.4 1.2 9.1 0.0 2.4 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-NADH-PPase PF09297.11 gi|330834424|ref|YP_004409152.1| - 0.0078 15.9 1.3 2.5 7.9 0.0 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-IS66 PF13005.7 gi|330834424|ref|YP_004409152.1| - 0.0088 16.4 1.8 0.18 12.2 2.5 2.2 1 1 1 2 2 2 1 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.6 gi|330834424|ref|YP_004409152.1| - 0.015 15.2 4.8 0.62 10.0 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf_Rg PF17915.1 gi|330834424|ref|YP_004409152.1| - 0.016 14.6 1.5 3.2 7.2 0.3 2.4 2 0 0 2 2 2 0 Reverse gyrase zinc finger DUF1272 PF06906.11 gi|330834424|ref|YP_004409152.1| - 0.019 15.1 0.6 1.8 8.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Ogr_Delta PF04606.12 gi|330834424|ref|YP_004409152.1| - 0.019 15.0 2.1 0.92 9.5 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DNA_RNApol_7kD PF03604.13 gi|330834424|ref|YP_004409152.1| - 0.032 13.9 1.2 2.2 8.1 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.16 gi|330834424|ref|YP_004409152.1| - 0.038 13.9 2.0 1.3 9.0 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Prim_Zn_Ribbon PF08273.12 gi|330834424|ref|YP_004409152.1| - 0.045 14.1 2.6 3.6 7.9 0.2 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf_UBZ PF18439.1 gi|330834424|ref|YP_004409152.1| - 0.067 12.8 2.0 5.9 6.6 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-FPG_IleRS PF06827.14 gi|330834424|ref|YP_004409152.1| - 0.089 12.7 2.3 2.4 8.1 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-Mss51 PF13824.6 gi|330834424|ref|YP_004409152.1| - 0.11 12.6 0.4 6.9 6.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF1610 PF07754.11 gi|330834424|ref|YP_004409152.1| - 0.11 12.5 9.7 1.4 9.0 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zinc_ribbon_9 PF14369.6 gi|330834424|ref|YP_004409152.1| - 0.13 12.6 1.6 3.6 7.9 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon PhnA_Zn_Ribbon PF08274.12 gi|330834424|ref|YP_004409152.1| - 0.13 12.2 2.8 3 7.9 0.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.16 gi|330834424|ref|YP_004409152.1| - 0.15 12.1 4.4 2.2 8.4 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_10 PF10058.9 gi|330834424|ref|YP_004409152.1| - 0.15 11.8 1.1 5 6.9 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-tcix PF14952.6 gi|330834424|ref|YP_004409152.1| - 0.16 11.6 2.6 8.6 6.1 0.3 2.4 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.12 gi|330834424|ref|YP_004409152.1| - 0.31 11.2 1.7 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.11 gi|330834424|ref|YP_004409152.1| - 0.34 10.5 3.3 11 5.7 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-TFIIB PF13453.6 gi|330834424|ref|YP_004409152.1| - 0.41 10.0 3.6 11 5.4 0.0 2.6 3 0 0 3 3 3 0 Transcription factor zinc-finger Zn_ribbon_SprT PF17283.2 gi|330834424|ref|YP_004409152.1| - 0.42 10.6 3.3 14 5.7 0.1 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-3CxxC_2 PF17180.4 gi|330834424|ref|YP_004409152.1| - 0.43 11.4 3.5 0.38 11.5 0.7 2.2 2 1 0 2 2 2 0 Zinc-binding domain Rubredoxin_2 PF18073.1 gi|330834424|ref|YP_004409152.1| - 0.53 10.1 4.4 4.7 7.0 0.4 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-RING_7 PF02591.15 gi|330834424|ref|YP_004409152.1| - 4.4 7.6 7.0 32 4.8 0.3 3.2 3 0 0 3 3 3 0 C4-type zinc ribbon domain GDC-P PF02347.16 gi|330834426|ref|YP_004409154.1| - 9.6e-17 60.9 0.0 1.1e-15 57.4 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|330834426|ref|YP_004409154.1| - 1.2e-06 27.7 0.1 2.3e-06 26.8 0.1 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|330834426|ref|YP_004409154.1| - 0.00061 19.1 0.1 0.00099 18.5 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|330834427|ref|YP_004409155.1| - 6.8e-112 374.4 0.0 8.5e-112 374.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein DUF3685 PF12452.8 gi|330834427|ref|YP_004409155.1| - 0.0022 17.7 0.1 0.0043 16.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3685) GCV_T PF01571.21 gi|330834428|ref|YP_004409156.1| - 2e-62 210.9 0.0 2.6e-62 210.5 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|330834428|ref|YP_004409156.1| - 7.8e-17 61.0 0.0 1.4e-16 60.2 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GCV_H PF01597.19 gi|330834429|ref|YP_004409157.1| - 3.7e-46 156.0 0.4 4.2e-46 155.8 0.4 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|330834429|ref|YP_004409157.1| - 6.6e-06 25.9 0.2 1.6e-05 24.7 0.2 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|330834429|ref|YP_004409157.1| - 0.00018 21.4 0.1 0.00031 20.6 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain PAC2 PF09754.9 gi|330834430|ref|YP_004409158.1| - 7e-27 94.8 0.0 8.4e-27 94.6 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Ribosomal_S8 PF00410.19 gi|330834431|ref|YP_004409159.1| - 0.11 12.5 0.4 0.14 12.2 0.4 1.2 1 1 0 1 1 1 0 Ribosomal protein S8 MazE_antitoxin PF04014.18 gi|330834432|ref|YP_004409160.1| - 3.7e-09 36.3 0.2 1.4e-08 34.4 0.2 2.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin ParcG PF10274.9 gi|330834432|ref|YP_004409160.1| - 0.008 16.3 0.8 0.017 15.3 0.8 1.6 1 0 0 1 1 1 1 Parkin co-regulated protein SapC PF07277.11 gi|330834432|ref|YP_004409160.1| - 0.14 11.7 0.1 0.23 11.0 0.1 1.2 1 0 0 1 1 1 0 SapC eIF2_C PF09173.11 gi|330834432|ref|YP_004409160.1| - 0.32 11.3 4.3 0.28 11.5 0.3 2.6 3 0 0 3 3 3 0 Initiation factor eIF2 gamma, C terminal DUF16 PF01519.16 gi|330834432|ref|YP_004409160.1| - 2.4 8.7 4.9 8.7 6.9 0.2 2.8 2 1 0 2 2 2 0 Protein of unknown function DUF16 ABC_tran PF00005.27 gi|330834433|ref|YP_004409161.1| - 1.3e-23 84.1 0.1 1.7e-23 83.6 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|330834433|ref|YP_004409161.1| - 6.4e-07 29.0 0.1 3.4e-06 26.7 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|330834433|ref|YP_004409161.1| - 2e-06 27.8 0.0 0.053 13.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330834433|ref|YP_004409161.1| - 0.0031 17.2 0.3 0.0094 15.7 0.1 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|330834433|ref|YP_004409161.1| - 0.012 15.6 0.2 0.019 14.9 0.2 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|330834433|ref|YP_004409161.1| - 0.037 14.2 0.0 0.046 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|330834433|ref|YP_004409161.1| - 0.066 11.9 0.1 0.11 11.1 0.0 1.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|330834433|ref|YP_004409161.1| - 0.083 13.3 0.2 0.16 12.4 0.2 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|330834433|ref|YP_004409161.1| - 0.11 13.0 0.4 0.18 12.3 0.3 1.4 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|330834433|ref|YP_004409161.1| - 0.12 12.0 0.1 0.25 10.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|330834433|ref|YP_004409161.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0051 PF01458.17 gi|330834434|ref|YP_004409162.1| - 4.1e-64 216.3 0.0 5e-64 216.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4295 PF14128.6 gi|330834434|ref|YP_004409162.1| - 0.069 13.0 0.0 0.19 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) UPF0051 PF01458.17 gi|330834435|ref|YP_004409163.1| - 3.2e-35 121.8 0.8 4.3e-35 121.4 0.8 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) CEP1-DNA_bind PF09287.10 gi|330834435|ref|YP_004409163.1| - 0.026 14.2 0.0 0.047 13.3 0.0 1.4 1 0 0 1 1 1 0 CEP-1, DNA binding PGK PF00162.19 gi|330834437|ref|YP_004409165.1| - 3.8e-98 328.9 0.0 4.3e-98 328.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Gp_dh_C PF02800.20 gi|330834438|ref|YP_004409166.1| - 2.9e-23 82.2 2.4 4.6e-23 81.5 2.4 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|330834438|ref|YP_004409166.1| - 1.9e-11 44.2 0.2 5.1e-11 42.8 0.1 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|330834438|ref|YP_004409166.1| - 1.6e-05 25.1 0.3 8.7e-05 22.8 0.0 2.4 2 2 1 3 3 3 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|330834438|ref|YP_004409166.1| - 0.00079 18.8 0.9 0.098 12.0 0.1 3.0 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|330834438|ref|YP_004409166.1| - 0.021 15.4 0.0 0.048 14.3 0.0 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|330834438|ref|YP_004409166.1| - 0.086 13.3 0.0 0.23 11.9 0.0 1.8 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Usp PF00582.26 gi|330834439|ref|YP_004409167.1| - 3.2e-17 63.4 0.1 2e-09 38.1 0.0 2.0 1 1 1 2 2 2 2 Universal stress protein family Pyr_redox_2 PF07992.14 gi|330834439|ref|YP_004409167.1| - 0.084 12.1 0.0 0.092 12.0 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SHMT PF00464.19 gi|330834440|ref|YP_004409168.1| - 1.2e-61 208.5 0.1 1.6e-61 208.1 0.1 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|330834440|ref|YP_004409168.1| - 1.9e-06 27.3 0.0 7e-05 22.2 0.0 2.7 2 1 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|330834440|ref|YP_004409168.1| - 3.1e-06 26.7 0.0 4.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|330834440|ref|YP_004409168.1| - 0.032 13.2 0.0 0.069 12.1 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-V DUF919 PF06034.11 gi|330834440|ref|YP_004409168.1| - 0.12 12.2 0.8 1.2 9.0 0.7 2.5 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF919) HMG-CoA_red PF00368.18 gi|330834441|ref|YP_004409169.1| - 1.1e-128 429.3 0.2 1.3e-128 429.1 0.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase OB_aCoA_assoc PF01796.17 gi|330834442|ref|YP_004409170.1| - 1.2e-15 57.3 0.1 1.6e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|330834442|ref|YP_004409170.1| - 1.9e-08 34.0 0.4 3e-08 33.4 0.4 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Ribosomal_L37e PF01907.19 gi|330834442|ref|YP_004409170.1| - 0.0018 18.4 0.9 0.0027 17.8 0.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e TackOD1 PF18551.1 gi|330834442|ref|YP_004409170.1| - 0.0021 17.7 0.5 0.003 17.3 0.5 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DZR PF12773.7 gi|330834442|ref|YP_004409170.1| - 0.039 14.0 0.6 0.062 13.3 0.6 1.2 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|330834442|ref|YP_004409170.1| - 0.11 12.6 0.2 0.16 12.0 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|330834442|ref|YP_004409170.1| - 0.38 10.3 4.5 5.8 6.5 0.5 2.6 2 0 0 2 2 2 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|330834442|ref|YP_004409170.1| - 0.96 9.2 6.9 12 5.7 0.2 3.1 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Thiolase_N PF00108.23 gi|330834443|ref|YP_004409171.1| - 1.9e-09 37.3 0.0 7.1e-09 35.4 0.0 1.9 1 1 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|330834443|ref|YP_004409171.1| - 0.00029 20.6 0.4 0.025 14.4 0.0 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|330834443|ref|YP_004409171.1| - 0.0038 16.9 0.1 0.0093 15.6 0.1 1.6 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Glyco_trans_4_4 PF13579.6 gi|330834443|ref|YP_004409171.1| - 0.035 14.6 0.0 0.21 12.0 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Thiolase_C PF02803.18 gi|330834443|ref|YP_004409171.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain ACP_syn_III_C PF08541.10 gi|330834444|ref|YP_004409172.1| - 8.9e-12 45.0 0.0 3.9e-11 43.0 0.0 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.10 gi|330834444|ref|YP_004409172.1| - 2.7e-05 24.0 0.2 0.0034 17.1 0.0 2.2 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|330834444|ref|YP_004409172.1| - 4.9e-05 23.1 3.1 4.9e-05 23.1 1.0 2.1 3 0 0 3 3 3 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.18 gi|330834444|ref|YP_004409172.1| - 0.014 15.0 0.0 0.036 13.7 0.0 1.7 2 0 0 2 2 2 0 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|330834444|ref|YP_004409172.1| - 0.015 14.6 1.2 0.025 14.0 1.2 1.3 1 0 0 1 1 1 0 Thiolase, N-terminal domain AdoMet_dc PF02675.15 gi|330834445|ref|YP_004409173.1| - 5.4e-34 116.6 0.0 6.1e-34 116.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase SpoVIF PF14069.6 gi|330834445|ref|YP_004409173.1| - 0.011 15.5 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 0 Stage VI sporulation protein F DUF4507 PF14964.6 gi|330834445|ref|YP_004409173.1| - 0.096 11.6 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4507) SP_C-Propep PF08999.10 gi|330834446|ref|YP_004409174.1| - 0.044 13.6 0.3 0.06 13.1 0.3 1.2 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide MtN3_slv PF03083.16 gi|330834446|ref|YP_004409174.1| - 0.049 13.7 0.4 0.094 12.8 0.4 1.5 1 0 0 1 1 1 0 Sugar efflux transporter for intercellular exchange DUF3139 PF11337.8 gi|330834447|ref|YP_004409175.1| - 0.0016 19.0 1.0 0.0064 17.1 1.0 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3139) Pilin_N PF07790.11 gi|330834447|ref|YP_004409175.1| - 0.007 17.3 4.7 0.032 15.1 0.3 3.3 3 1 1 4 4 4 1 Archaeal Type IV pilin, N-terminal DUF3139 PF11337.8 gi|330834448|ref|YP_004409176.1| - 0.012 16.3 0.2 0.053 14.2 0.2 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) DUF4083 PF13314.6 gi|330834448|ref|YP_004409176.1| - 0.054 13.4 1.4 0.1 12.6 1.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) PQ-loop PF04193.14 gi|330834449|ref|YP_004409177.1| - 0.066 13.0 2.5 0.11 12.3 0.8 2.2 2 0 0 2 2 2 0 PQ loop repeat Shisa PF13908.6 gi|330834449|ref|YP_004409177.1| - 0.12 12.6 0.5 0.16 12.2 0.5 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Wzz PF02706.15 gi|330834449|ref|YP_004409177.1| - 0.2 12.0 3.8 12 6.3 1.6 2.2 2 0 0 2 2 2 0 Chain length determinant protein DUF5616 PF18481.1 gi|330834451|ref|YP_004409179.1| - 7.7e-24 84.6 0.7 1.1e-23 84.1 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|330834451|ref|YP_004409179.1| - 1.3e-14 53.6 0.3 2.1e-14 52.9 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Mut7-C PF01927.16 gi|330834451|ref|YP_004409179.1| - 0.014 15.5 0.1 0.05 13.7 0.0 1.8 2 0 0 2 2 2 0 Mut7-C RNAse domain tRNA-synt_2c PF01411.19 gi|330834452|ref|YP_004409180.1| - 7.7e-122 407.6 0.0 1e-121 407.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|330834452|ref|YP_004409180.1| - 6.6e-13 48.5 0.2 1.5e-12 47.4 0.2 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.19 gi|330834452|ref|YP_004409180.1| - 0.00012 22.5 1.4 0.00012 22.5 1.4 1.9 2 0 0 2 2 2 1 DHHA1 domain tRNA-synt_2e PF02091.15 gi|330834452|ref|YP_004409180.1| - 0.0039 16.5 0.0 0.012 14.9 0.0 1.8 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Ribosomal_60s PF00428.19 gi|330834453|ref|YP_004409181.1| - 8.5e-19 67.9 13.2 9.9e-19 67.7 13.2 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|330834453|ref|YP_004409181.1| - 0.012 15.6 2.2 2.9 8.0 0.1 2.1 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain VIGSSK PF14773.6 gi|330834453|ref|YP_004409181.1| - 0.082 13.0 2.4 0.67 10.1 0.1 2.3 2 0 0 2 2 2 0 Helicase-associated putative binding domain, C-terminal PhetRS_B1 PF18262.1 gi|330834453|ref|YP_004409181.1| - 0.099 12.9 0.2 0.18 12.1 0.2 1.6 1 1 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain Ribosomal_L10 PF00466.20 gi|330834454|ref|YP_004409182.1| - 1.9e-26 92.1 1.5 5e-26 90.8 0.4 2.1 2 0 0 2 2 2 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|330834454|ref|YP_004409182.1| - 1.7e-16 60.0 0.2 3.2e-16 59.1 0.2 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|330834454|ref|YP_004409182.1| - 0.18 12.4 11.8 0.38 11.4 11.8 1.7 1 1 0 1 1 1 0 60s Acidic ribosomal protein Ribosomal_L1 PF00687.21 gi|330834455|ref|YP_004409183.1| - 1.9e-32 112.7 1.4 2.4e-32 112.4 1.4 1.2 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family KORA PF16509.5 gi|330834455|ref|YP_004409183.1| - 0.012 15.9 0.0 7.4 6.9 0.0 2.4 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor Ribosomal_L11_N PF03946.14 gi|330834456|ref|YP_004409184.1| - 1.4e-20 72.9 1.0 2.2e-20 72.3 1.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|330834456|ref|YP_004409184.1| - 1.5e-19 70.2 1.2 2.7e-19 69.4 1.2 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain HsbA PF12296.8 gi|330834456|ref|YP_004409184.1| - 0.03 14.7 0.5 0.58 10.6 0.2 2.1 2 0 0 2 2 2 0 Hydrophobic surface binding protein A Spt5-NGN PF03439.13 gi|330834457|ref|YP_004409185.1| - 3e-22 78.3 0.0 5e-22 77.6 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|330834457|ref|YP_004409185.1| - 2.6e-05 24.0 0.1 8.7e-05 22.3 0.1 1.9 1 0 0 1 1 1 1 KOW motif SecE PF00584.20 gi|330834458|ref|YP_004409186.1| - 0.00023 21.0 0.2 0.00025 20.9 0.2 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Lambda_CIII PF02061.16 gi|330834458|ref|YP_004409186.1| - 0.037 14.1 0.3 0.054 13.5 0.3 1.3 1 0 0 1 1 1 0 Lambda Phage CIII SRP54 PF00448.22 gi|330834459|ref|YP_004409187.1| - 3e-72 242.4 0.1 4.6e-72 241.8 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|330834459|ref|YP_004409187.1| - 1.5e-10 41.1 6.1 1.5e-10 41.1 6.1 3.4 3 1 1 4 4 4 1 SRP54-type protein, helical bundle domain AAA_30 PF13604.6 gi|330834459|ref|YP_004409187.1| - 2.4e-06 27.4 0.5 4.5e-06 26.5 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|330834459|ref|YP_004409187.1| - 1.1e-05 25.8 0.1 9.7e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain cobW PF02492.19 gi|330834459|ref|YP_004409187.1| - 4e-05 23.3 0.0 7.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|330834459|ref|YP_004409187.1| - 6e-05 23.1 0.0 0.00038 20.5 0.0 2.3 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.6 gi|330834459|ref|YP_004409187.1| - 0.00018 21.7 0.1 0.0019 18.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|330834459|ref|YP_004409187.1| - 0.00022 21.6 3.0 0.00025 21.5 0.0 2.4 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|330834459|ref|YP_004409187.1| - 0.00063 20.2 1.3 0.0014 19.0 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain MeaB PF03308.16 gi|330834459|ref|YP_004409187.1| - 0.00079 18.5 1.8 0.0075 15.3 0.5 2.6 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_14 PF13173.6 gi|330834459|ref|YP_004409187.1| - 0.0017 18.4 0.4 0.0047 17.0 0.0 1.9 2 1 0 2 2 2 1 AAA domain NTPase_1 PF03266.15 gi|330834459|ref|YP_004409187.1| - 0.003 17.5 3.1 0.1 12.5 0.8 3.0 1 1 0 2 2 2 1 NTPase AAA_24 PF13479.6 gi|330834459|ref|YP_004409187.1| - 0.0069 16.1 0.5 0.034 13.9 0.0 2.4 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|330834459|ref|YP_004409187.1| - 0.013 14.8 0.0 0.029 13.7 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|330834459|ref|YP_004409187.1| - 0.016 15.6 0.2 0.052 14.0 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|330834459|ref|YP_004409187.1| - 0.028 14.5 0.3 0.19 11.8 0.3 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase KdpD PF02702.17 gi|330834459|ref|YP_004409187.1| - 0.029 13.8 1.6 0.049 13.1 0.1 2.2 3 1 0 3 3 3 0 Osmosensitive K+ channel His kinase sensor domain APS_kinase PF01583.20 gi|330834459|ref|YP_004409187.1| - 0.029 14.2 0.3 0.14 12.1 0.0 2.1 2 0 0 2 2 2 0 Adenylylsulphate kinase RsgA_GTPase PF03193.16 gi|330834459|ref|YP_004409187.1| - 0.03 14.2 0.3 0.085 12.8 0.2 1.9 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|330834459|ref|YP_004409187.1| - 0.044 14.3 1.5 0.51 10.8 0.0 2.3 2 0 0 2 2 2 0 ABC transporter AAA_31 PF13614.6 gi|330834459|ref|YP_004409187.1| - 0.047 13.6 0.5 0.047 13.6 0.5 2.4 2 1 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330834459|ref|YP_004409187.1| - 0.048 13.2 0.1 0.098 12.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region NACHT PF05729.12 gi|330834459|ref|YP_004409187.1| - 0.074 13.0 1.2 0.19 11.7 0.1 2.2 3 0 0 3 3 3 0 NACHT domain AAA_19 PF13245.6 gi|330834459|ref|YP_004409187.1| - 0.081 13.3 0.1 0.14 12.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain TPP_enzyme_M PF00205.22 gi|330834459|ref|YP_004409187.1| - 0.12 12.1 0.2 4.2 7.1 0.2 2.8 2 1 1 3 3 2 0 Thiamine pyrophosphate enzyme, central domain DUF445 PF04286.12 gi|330834459|ref|YP_004409187.1| - 0.51 10.1 8.3 0.91 9.3 8.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF445) ATPase_2 PF01637.18 gi|330834459|ref|YP_004409187.1| - 0.61 10.0 0.0 0.61 10.0 0.0 2.9 1 1 2 3 3 3 0 ATPase domain predominantly from Archaea Prefoldin PF02996.17 gi|330834460|ref|YP_004409188.1| - 6.2e-19 68.1 4.7 1.1e-18 67.3 4.5 1.5 1 1 1 2 2 2 1 Prefoldin subunit HHH_6 PF14579.6 gi|330834460|ref|YP_004409188.1| - 0.0012 19.1 0.5 0.04 14.2 0.5 2.9 1 1 0 1 1 1 1 Helix-hairpin-helix motif Mt_ATP-synt_D PF05873.12 gi|330834460|ref|YP_004409188.1| - 0.032 14.1 0.5 0.19 11.6 0.2 1.9 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) CLZ PF16526.5 gi|330834460|ref|YP_004409188.1| - 0.036 14.4 4.7 0.062 13.7 0.8 2.3 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF3053 PF11254.8 gi|330834460|ref|YP_004409188.1| - 0.036 13.6 1.0 1.7 8.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) Methyltranf_PUA PF13636.6 gi|330834460|ref|YP_004409188.1| - 0.039 13.9 0.0 0.074 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA-binding PUA-like domain of methyltransferase RsmF DUF948 PF06103.11 gi|330834460|ref|YP_004409188.1| - 0.042 14.1 0.5 0.86 9.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Acyl-CoA_dh_C PF12806.7 gi|330834460|ref|YP_004409188.1| - 0.047 13.8 0.4 1 9.5 0.1 2.1 2 0 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like DASH_Duo1 PF08651.10 gi|330834460|ref|YP_004409188.1| - 0.052 13.3 2.1 5.6 6.8 0.2 2.3 2 0 0 2 2 2 0 DASH complex subunit Duo1 Sec20 PF03908.13 gi|330834460|ref|YP_004409188.1| - 0.057 13.3 3.7 1.7 8.6 0.4 2.3 2 0 0 2 2 2 0 Sec20 DUF2205 PF10224.9 gi|330834460|ref|YP_004409188.1| - 0.068 13.2 4.9 0.92 9.6 0.6 2.3 2 0 0 2 2 2 0 Short coiled-coil protein DCA16 PF15349.6 gi|330834460|ref|YP_004409188.1| - 0.1 12.1 0.0 0.1 12.1 0.0 1.1 1 0 0 1 1 1 0 DDB1- and CUL4-associated factor 16 DUF713 PF05218.14 gi|330834460|ref|YP_004409188.1| - 0.11 12.3 2.9 0.89 9.3 0.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF713) Syntaxin-6_N PF09177.11 gi|330834460|ref|YP_004409188.1| - 0.11 13.0 2.3 0.29 11.7 1.6 1.9 1 1 1 2 2 2 0 Syntaxin 6, N-terminal HisKA_3 PF07730.13 gi|330834460|ref|YP_004409188.1| - 0.11 13.0 2.2 1.4 9.5 0.3 2.4 2 1 0 2 2 2 0 Histidine kinase Fib_alpha PF08702.10 gi|330834460|ref|YP_004409188.1| - 0.13 12.4 4.9 1.2 9.3 1.3 2.1 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family WXG100 PF06013.12 gi|330834460|ref|YP_004409188.1| - 0.13 12.5 4.2 5.7 7.3 0.2 2.3 2 0 0 2 2 2 0 Proteins of 100 residues with WXG YscO PF07321.12 gi|330834460|ref|YP_004409188.1| - 0.16 12.0 5.8 0.12 12.3 2.1 2.0 2 0 0 2 2 2 0 Type III secretion protein YscO PI3K_P85_iSH2 PF16454.5 gi|330834460|ref|YP_004409188.1| - 0.2 11.3 6.3 2.9 7.5 1.9 2.1 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain NPV_P10 PF05531.12 gi|330834460|ref|YP_004409188.1| - 0.2 12.1 5.8 4 8.0 0.7 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein EspB_PE PF18625.1 gi|330834460|ref|YP_004409188.1| - 0.22 12.0 3.1 13 6.3 0.2 2.5 2 1 0 2 2 2 0 ESX-1 secreted protein B PE domain Pex24p PF06398.11 gi|330834460|ref|YP_004409188.1| - 0.22 10.5 0.5 3.7 6.4 0.2 2.0 1 1 1 2 2 2 0 Integral peroxisomal membrane peroxin TMF_DNA_bd PF12329.8 gi|330834460|ref|YP_004409188.1| - 0.26 11.3 10.9 0.53 10.3 2.7 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF4795 PF16043.5 gi|330834460|ref|YP_004409188.1| - 0.27 10.8 5.5 0.79 9.3 5.5 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF5320 PF17253.2 gi|330834460|ref|YP_004409188.1| - 0.34 12.0 1.3 5.1 8.2 0.0 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5320) Prefoldin_2 PF01920.20 gi|330834460|ref|YP_004409188.1| - 0.37 10.8 10.5 1.2 9.2 0.6 2.1 2 0 0 2 2 2 0 Prefoldin subunit DUF3450 PF11932.8 gi|330834460|ref|YP_004409188.1| - 0.84 8.9 8.4 0.16 11.3 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Ribosomal_L18A PF01775.17 gi|330834461|ref|YP_004409189.1| - 8.7e-12 45.2 0.7 2.5e-11 43.7 0.7 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A RNA_pol_Rbc25 PF08292.12 gi|330834461|ref|YP_004409189.1| - 0.01 16.0 0.5 0.013 15.8 0.5 1.0 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 eIF-6 PF01912.18 gi|330834462|ref|YP_004409190.1| - 7.9e-65 217.9 8.8 9.5e-65 217.7 8.8 1.1 1 0 0 1 1 1 1 eIF-6 family YscJ_FliF PF01514.17 gi|330834462|ref|YP_004409190.1| - 0.021 14.5 0.6 1.1 8.8 0.1 2.3 2 1 0 2 2 2 0 Secretory protein of YscJ/FliF family Ribosomal_L31e PF01198.19 gi|330834463|ref|YP_004409191.1| - 0.00014 22.0 1.2 0.00018 21.7 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.20 gi|330834464|ref|YP_004409192.1| - 7.7e-21 73.4 8.1 8.9e-21 73.2 8.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein T_Ag_DNA_bind PF02217.16 gi|330834464|ref|YP_004409192.1| - 0.17 12.5 0.0 0.21 12.2 0.0 1.1 1 0 0 1 1 1 0 Origin of replication binding protein dsDNA_bind PF01984.20 gi|330834465|ref|YP_004409193.1| - 7.8e-25 87.3 11.5 9.2e-25 87.1 11.5 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SurA_N PF09312.11 gi|330834465|ref|YP_004409193.1| - 0.086 12.9 2.6 0.088 12.9 1.3 1.7 1 1 1 2 2 2 0 SurA N-terminal domain DUF4085 PF13315.6 gi|330834465|ref|YP_004409193.1| - 0.26 10.9 1.4 0.3 10.7 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) SurA_N_2 PF13623.6 gi|330834465|ref|YP_004409193.1| - 0.27 11.1 2.3 0.82 9.5 2.3 1.8 1 1 0 1 1 1 0 SurA N-terminal domain Ribosomal_S19e PF01090.19 gi|330834466|ref|YP_004409194.1| - 5.8e-43 145.9 0.0 6.5e-43 145.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e QRPTase_C PF01729.19 gi|330834467|ref|YP_004409195.1| - 1.2e-19 70.7 0.0 1.6e-19 70.3 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|330834467|ref|YP_004409195.1| - 3.7e-05 24.1 0.0 7.1e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|330834467|ref|YP_004409195.1| - 5.1e-05 23.2 0.0 0.0001 22.3 0.0 1.5 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|330834467|ref|YP_004409195.1| - 0.0023 18.3 0.1 0.64 10.4 0.0 2.7 2 1 1 3 3 3 2 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MazE_antitoxin PF04014.18 gi|330834468|ref|YP_004409196.1| - 1.8e-07 30.9 0.1 8.9e-07 28.7 0.0 2.2 3 0 0 3 3 3 1 Antidote-toxin recognition MazE, bacterial antitoxin PhoU PF01895.19 gi|330834468|ref|YP_004409196.1| - 0.00075 19.9 2.3 0.00075 19.9 2.3 2.6 2 0 0 2 2 2 1 PhoU domain RICTOR_M PF14666.6 gi|330834468|ref|YP_004409196.1| - 0.053 13.3 0.8 0.14 11.9 0.1 2.0 2 0 0 2 2 2 0 Rapamycin-insensitive companion of mTOR, middle domain Phasin PF05597.11 gi|330834468|ref|YP_004409196.1| - 3 7.9 5.3 6.8 6.7 1.1 2.7 3 0 0 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF711 PF05167.12 gi|330834469|ref|YP_004409197.1| - 8.5e-29 100.7 0.0 1.5e-28 99.9 0.0 1.5 1 1 0 1 1 1 1 Uncharacterised ACR (DUF711) Phage_integrase PF00589.22 gi|330834471|ref|YP_004409199.1| - 1.1e-40 139.2 0.4 1.9e-40 138.4 0.4 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|330834471|ref|YP_004409199.1| - 1.1e-13 51.4 0.0 2.5e-08 34.3 0.0 3.0 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|330834471|ref|YP_004409199.1| - 8e-07 29.3 0.0 0.00018 21.7 0.0 2.7 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Integrase_1 PF12835.7 gi|330834471|ref|YP_004409199.1| - 0.027 14.6 0.2 0.043 13.9 0.2 1.4 1 0 0 1 1 1 0 Integrase Methyltr_RsmB-F PF01189.17 gi|330834473|ref|YP_004409201.1| - 1.9e-36 125.6 0.0 1.5e-34 119.4 0.0 2.2 1 1 1 2 2 2 2 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|330834473|ref|YP_004409201.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.20 gi|330834473|ref|YP_004409201.1| - 0.0013 18.7 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 PUA domain MTS PF05175.14 gi|330834473|ref|YP_004409201.1| - 0.077 12.5 0.0 0.52 9.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|330834473|ref|YP_004409201.1| - 0.11 13.2 0.0 0.41 11.4 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Hexapep PF00132.24 gi|330834474|ref|YP_004409202.1| - 3.5e-14 51.9 21.4 2e-09 36.8 8.1 3.1 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|330834474|ref|YP_004409202.1| - 2e-08 33.8 16.7 0.0001 21.9 5.5 3.1 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase S4_2 PF13275.6 gi|330834474|ref|YP_004409202.1| - 0.039 13.8 0.1 0.17 11.8 0.0 2.1 2 1 0 2 2 2 0 S4 domain HupF_HypC PF01455.18 gi|330834474|ref|YP_004409202.1| - 0.83 9.8 3.1 21 5.4 2.1 3.1 2 1 1 3 3 3 0 HupF/HypC family AMP-binding PF00501.28 gi|330834475|ref|YP_004409203.1| - 2.2e-55 188.0 0.0 1.8e-40 138.8 0.0 2.0 2 0 0 2 2 2 2 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330834475|ref|YP_004409203.1| - 2.5e-10 41.2 0.0 6.6e-10 39.8 0.0 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thioredoxin PF00085.20 gi|330834476|ref|YP_004409204.1| - 1e-23 83.3 0.1 1.5e-23 82.7 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|330834476|ref|YP_004409204.1| - 8.1e-10 39.1 0.5 2e-08 34.6 0.5 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain OST3_OST6 PF04756.13 gi|330834476|ref|YP_004409204.1| - 1.7e-06 27.6 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Thioredoxin_8 PF13905.6 gi|330834476|ref|YP_004409204.1| - 2.4e-06 27.8 0.7 0.00091 19.5 0.0 2.6 2 1 1 3 3 3 1 Thioredoxin-like Thioredoxin_3 PF13192.6 gi|330834476|ref|YP_004409204.1| - 2.5e-06 27.4 0.8 2.6e-05 24.2 0.0 2.1 1 1 1 2 2 2 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|330834476|ref|YP_004409204.1| - 0.00013 21.9 0.1 0.01 15.7 0.1 2.2 1 1 1 2 2 2 1 AhpC/TSA family Thioredoxin_9 PF14595.6 gi|330834476|ref|YP_004409204.1| - 0.00029 20.6 0.1 0.00038 20.2 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.6 gi|330834476|ref|YP_004409204.1| - 0.0067 16.6 0.0 0.011 16.0 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like DSBA PF01323.20 gi|330834476|ref|YP_004409204.1| - 0.032 14.0 3.7 0.2 11.4 0.0 2.4 2 1 1 3 3 3 0 DSBA-like thioredoxin domain Redoxin PF08534.10 gi|330834476|ref|YP_004409204.1| - 0.035 13.8 0.4 0.091 12.5 0.3 1.8 1 1 1 2 2 2 0 Redoxin DIM1 PF02966.16 gi|330834476|ref|YP_004409204.1| - 0.038 13.8 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Mitosis protein DIM1 HyaE PF07449.11 gi|330834476|ref|YP_004409204.1| - 0.091 12.7 0.0 0.22 11.5 0.0 1.7 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE IF2_N PF04760.15 gi|330834476|ref|YP_004409204.1| - 0.1 12.4 1.5 3.9 7.4 0.4 2.5 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region DUF4317 PF14199.6 gi|330834476|ref|YP_004409204.1| - 0.12 11.5 2.0 0.19 10.8 2.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4317) Thioredoxin_5 PF13743.6 gi|330834476|ref|YP_004409204.1| - 0.28 10.9 1.9 4.2 7.0 0.1 2.5 2 1 1 3 3 3 0 Thioredoxin ABC_tran PF00005.27 gi|330834477|ref|YP_004409205.1| - 2e-23 83.4 0.0 2.6e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|330834477|ref|YP_004409205.1| - 1.6e-06 28.5 0.0 3.2e-06 27.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|330834477|ref|YP_004409205.1| - 5.8e-06 26.3 1.0 0.008 16.0 0.3 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 gi|330834477|ref|YP_004409205.1| - 9e-06 24.9 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_30 PF13604.6 gi|330834477|ref|YP_004409205.1| - 1e-05 25.4 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330834477|ref|YP_004409205.1| - 0.00011 22.7 0.0 0.00014 22.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|330834477|ref|YP_004409205.1| - 0.00011 22.8 5.3 0.00033 21.2 5.3 1.9 1 1 0 1 1 1 1 AAA domain PIF1 PF05970.14 gi|330834477|ref|YP_004409205.1| - 0.0004 19.7 0.6 0.39 9.8 0.1 2.1 1 1 1 2 2 2 2 PIF1-like helicase AAA_14 PF13173.6 gi|330834477|ref|YP_004409205.1| - 0.00057 19.9 0.1 0.41 10.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|330834477|ref|YP_004409205.1| - 0.00095 19.0 0.0 0.0019 18.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|330834477|ref|YP_004409205.1| - 0.0012 18.6 0.1 0.0023 17.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zot PF05707.12 gi|330834477|ref|YP_004409205.1| - 0.0018 18.0 0.1 0.058 13.0 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) RsgA_GTPase PF03193.16 gi|330834477|ref|YP_004409205.1| - 0.0021 18.0 0.9 0.084 12.8 0.2 2.1 2 0 0 2 2 2 1 RsgA GTPase NTPase_1 PF03266.15 gi|330834477|ref|YP_004409205.1| - 0.0032 17.4 0.3 0.011 15.6 0.1 1.9 2 0 0 2 2 2 1 NTPase AAA PF00004.29 gi|330834477|ref|YP_004409205.1| - 0.006 17.0 0.6 0.046 14.2 0.6 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|330834477|ref|YP_004409205.1| - 0.0076 16.2 0.4 0.021 14.8 0.2 1.7 2 0 0 2 2 2 1 NACHT domain Zeta_toxin PF06414.12 gi|330834477|ref|YP_004409205.1| - 0.0078 15.5 0.1 0.04 13.2 0.0 1.9 1 1 1 2 2 2 1 Zeta toxin AAA_18 PF13238.6 gi|330834477|ref|YP_004409205.1| - 0.012 16.1 0.3 0.029 14.9 0.3 1.8 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|330834477|ref|YP_004409205.1| - 0.013 15.2 0.6 0.04 13.5 0.1 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|330834477|ref|YP_004409205.1| - 0.014 15.0 0.3 0.025 14.2 0.3 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|330834477|ref|YP_004409205.1| - 0.016 15.4 0.0 0.039 14.2 0.0 1.7 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|330834477|ref|YP_004409205.1| - 0.022 14.9 0.2 0.041 14.0 0.1 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|330834477|ref|YP_004409205.1| - 0.028 14.3 1.0 0.16 11.8 1.0 2.1 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|330834477|ref|YP_004409205.1| - 0.032 13.4 0.8 0.43 9.7 0.2 2.0 2 0 0 2 2 2 0 NB-ARC domain MobB PF03205.14 gi|330834477|ref|YP_004409205.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.19 gi|330834477|ref|YP_004409205.1| - 0.052 13.0 1.4 0.12 11.8 0.3 1.9 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.6 gi|330834477|ref|YP_004409205.1| - 0.094 13.0 0.3 0.23 11.8 0.3 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|330834477|ref|YP_004409205.1| - 0.099 11.4 0.8 0.16 10.8 0.8 1.5 1 1 0 1 1 1 0 Predicted ATPase of the ABC class FtsK_SpoIIIE PF01580.18 gi|330834477|ref|YP_004409205.1| - 0.12 11.7 0.2 11 5.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|330834477|ref|YP_004409205.1| - 0.12 12.3 0.1 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Gln-synt_C PF00120.24 gi|330834478|ref|YP_004409206.1| - 2e-132 441.4 0.0 2.3e-132 441.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|330834478|ref|YP_004409206.1| - 1.2e-24 85.8 0.0 2.3e-24 84.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain GTP_cyclohydroI PF01227.22 gi|330834479|ref|YP_004409207.1| - 3e-63 212.5 0.0 3.5e-63 212.3 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I FlpD PF02662.16 gi|330834479|ref|YP_004409207.1| - 0.0084 16.1 0.1 0.87 9.6 0.0 2.3 2 0 0 2 2 2 2 Methyl-viologen-reducing hydrogenase, delta subunit Peptidase_M24 PF00557.24 gi|330834480|ref|YP_004409208.1| - 4.4e-64 216.0 0.8 6.3e-64 215.5 0.8 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|330834480|ref|YP_004409208.1| - 0.00069 20.3 0.0 0.0013 19.4 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Rubis-subs-bind PF09273.11 gi|330834480|ref|YP_004409208.1| - 0.023 15.4 0.2 0.23 12.1 0.1 2.2 2 1 0 2 2 2 0 Rubisco LSMT substrate-binding Radical_SAM PF04055.21 gi|330834481|ref|YP_004409209.1| - 1.6e-26 93.7 0.2 4.4e-26 92.2 0.0 1.8 2 1 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|330834481|ref|YP_004409209.1| - 3.8e-25 88.3 0.0 8.4e-25 87.2 0.0 1.6 2 0 0 2 2 2 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|330834481|ref|YP_004409209.1| - 9.3e-05 22.7 0.0 0.00029 21.1 0.0 1.8 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330834481|ref|YP_004409209.1| - 0.0024 18.0 0.0 0.0058 16.8 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain zf-ribbon_3 PF13248.6 gi|330834482|ref|YP_004409210.1| - 0.0019 17.5 0.1 0.0026 17.1 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|330834482|ref|YP_004409210.1| - 0.019 14.4 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ZPR1 PF03367.13 gi|330834482|ref|YP_004409210.1| - 0.035 14.0 0.2 0.035 14.0 0.2 1.0 1 0 0 1 1 1 0 ZPR1 zinc-finger domain zinc_ribbon_2 PF13240.6 gi|330834482|ref|YP_004409210.1| - 0.036 13.8 0.1 0.06 13.1 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330834482|ref|YP_004409210.1| - 0.047 13.8 0.2 0.064 13.4 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|330834482|ref|YP_004409210.1| - 0.051 13.5 0.7 0.074 13.0 0.7 1.2 1 0 0 1 1 1 0 SprT-like zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|330834482|ref|YP_004409210.1| - 0.1 12.3 0.6 0.16 11.8 0.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|330834482|ref|YP_004409210.1| - 0.12 12.4 2.1 0.27 11.3 1.0 2.2 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PALP PF00291.25 gi|330834484|ref|YP_004409212.1| - 8.5e-51 173.1 0.0 2e-50 171.9 0.0 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TusA PF01206.17 gi|330834485|ref|YP_004409213.1| - 5.2e-11 42.2 0.1 6e-11 42.0 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA AAA_lid_7 PF17867.1 gi|330834485|ref|YP_004409213.1| - 0.057 13.6 0.0 0.059 13.6 0.0 1.1 1 0 0 1 1 1 0 Midasin AAA lid domain DrsE_2 PF13686.6 gi|330834486|ref|YP_004409214.1| - 2.3e-12 47.1 0.1 6e-07 29.5 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|330834486|ref|YP_004409214.1| - 0.00031 21.1 0.1 0.00063 20.1 0.1 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family Arb1 PF09692.10 gi|330834486|ref|YP_004409214.1| - 0.0076 15.5 0.0 0.041 13.0 0.0 1.7 1 1 1 2 2 2 1 Argonaute siRNA chaperone (ARC) complex subunit Arb1 Hexapep PF00132.24 gi|330834487|ref|YP_004409215.1| - 1.1e-15 56.7 10.5 0.00028 20.5 1.4 4.7 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|330834487|ref|YP_004409215.1| - 3.1e-12 46.6 0.1 1.7e-10 41.0 0.0 2.1 1 1 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330834487|ref|YP_004409215.1| - 2.6e-10 40.9 0.0 3.3e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.6 gi|330834487|ref|YP_004409215.1| - 0.00075 19.2 8.4 0.22 11.3 0.5 4.5 2 1 2 4 4 4 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|330834487|ref|YP_004409215.1| - 0.018 14.8 0.1 0.028 14.1 0.1 1.3 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|330834487|ref|YP_004409215.1| - 0.066 12.1 1.5 1.4 7.8 1.6 2.2 1 1 0 1 1 1 0 L-fucokinase SIS PF01380.22 gi|330834488|ref|YP_004409216.1| - 9.1e-40 135.5 3.4 2.2e-21 76.1 0.6 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|330834488|ref|YP_004409216.1| - 4e-19 69.2 0.0 8.6e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|330834488|ref|YP_004409216.1| - 5.1e-13 49.0 0.0 1.3e-12 47.7 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|330834488|ref|YP_004409216.1| - 0.045 12.6 0.1 0.071 12.0 0.1 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II TFA2_Winged_2 PF18121.1 gi|330834488|ref|YP_004409216.1| - 0.058 13.1 0.1 4.5 7.1 0.0 3.3 2 1 0 2 2 2 0 TFA2 Winged helix domain 2 ApbA PF02558.16 gi|330834488|ref|YP_004409216.1| - 0.14 11.8 0.5 2.8 7.6 0.0 2.9 3 1 1 4 4 4 0 Ketopantoate reductase PanE/ApbA GHMP_kinases_N PF00288.26 gi|330834489|ref|YP_004409217.1| - 1.3e-10 41.4 0.1 1.3e-10 41.4 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330834489|ref|YP_004409217.1| - 2.3e-10 40.7 0.1 5.5e-10 39.5 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal V-SNARE PF05008.15 gi|330834489|ref|YP_004409217.1| - 0.047 14.1 0.1 0.19 12.1 0.0 2.0 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus tRNA-Thr_ED PF08915.11 gi|330834490|ref|YP_004409218.1| - 1.1e-49 168.0 0.1 1.8e-49 167.3 0.1 1.3 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|330834490|ref|YP_004409218.1| - 5.6e-18 64.9 1.1 5.6e-18 64.9 1.1 1.9 2 0 0 2 2 2 1 Anticodon binding domain Glycoamylase PF10091.9 gi|330834490|ref|YP_004409218.1| - 0.035 13.7 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 Putative glucoamylase Cellulase PF00150.18 gi|330834490|ref|YP_004409218.1| - 0.16 11.4 0.0 0.83 9.0 0.0 2.0 1 1 1 2 2 2 0 Cellulase (glycosyl hydrolase family 5) Beta-Casp PF10996.8 gi|330834491|ref|YP_004409219.1| - 1.3e-16 60.8 0.0 3e-16 59.7 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|330834491|ref|YP_004409219.1| - 1.7e-11 43.9 0.0 3.5e-11 42.9 0.0 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|330834491|ref|YP_004409219.1| - 2.6e-09 36.8 0.1 7.5e-09 35.3 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|330834491|ref|YP_004409219.1| - 7e-06 25.7 0.0 1.3e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330834491|ref|YP_004409219.1| - 0.00057 20.0 0.5 0.0022 18.0 0.5 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily PDEase_II PF02112.15 gi|330834491|ref|YP_004409219.1| - 0.026 13.7 0.0 0.044 12.9 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II GrlR PF16518.5 gi|330834491|ref|YP_004409219.1| - 0.033 14.1 0.0 0.08 12.9 0.0 1.6 1 0 0 1 1 1 0 T3SS negative regulator,GrlR Lactamase_B_3 PF13483.6 gi|330834491|ref|YP_004409219.1| - 0.044 13.7 0.0 0.11 12.3 0.0 1.6 2 0 0 2 2 2 0 Beta-lactamase superfamily domain NAC PF01849.18 gi|330834492|ref|YP_004409220.1| - 1.4e-06 28.2 1.8 2.4e-06 27.4 1.0 1.8 2 0 0 2 2 2 1 NAC domain CUE PF02845.16 gi|330834492|ref|YP_004409220.1| - 0.002 17.8 0.0 0.0093 15.7 0.0 1.9 1 1 1 2 2 2 1 CUE domain HOIP-UBA PF16678.5 gi|330834492|ref|YP_004409220.1| - 0.022 14.8 0.1 0.032 14.2 0.1 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair UBA PF00627.31 gi|330834492|ref|YP_004409220.1| - 0.024 14.6 0.0 0.089 12.7 0.0 2.0 2 0 0 2 2 2 0 UBA/TS-N domain UBA_4 PF14555.6 gi|330834492|ref|YP_004409220.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 UBA-like domain MAT1-1-2 PF17043.5 gi|330834492|ref|YP_004409220.1| - 0.14 12.0 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 Mating type protein 1-1-2 of unknown function HTH_3 PF01381.22 gi|330834493|ref|YP_004409221.1| - 2e-08 34.1 0.2 3.8e-08 33.2 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|330834493|ref|YP_004409221.1| - 2.6e-05 24.1 0.1 5.6e-05 23.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|330834493|ref|YP_004409221.1| - 8.7e-05 22.8 0.1 0.00014 22.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|330834493|ref|YP_004409221.1| - 0.074 12.9 0.2 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TPP_enzyme_C PF02775.21 gi|330834494|ref|YP_004409222.1| - 1.7e-19 70.1 0.0 5.1e-19 68.6 0.0 1.9 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain POR_N PF01855.19 gi|330834494|ref|YP_004409222.1| - 2.6e-13 50.3 1.0 9.7e-13 48.4 0.4 2.0 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Fer4 PF00037.27 gi|330834494|ref|YP_004409222.1| - 3.7e-11 42.3 14.6 1.8e-08 33.9 6.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330834494|ref|YP_004409222.1| - 3.2e-08 34.0 8.4 3.9e-06 27.4 0.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain TPP_enzyme_N PF02776.18 gi|330834494|ref|YP_004409222.1| - 3.3e-08 33.3 0.6 0.0021 17.7 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Fer4_6 PF12837.7 gi|330834494|ref|YP_004409222.1| - 5.1e-08 32.7 21.0 7.3e-06 25.8 5.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330834494|ref|YP_004409222.1| - 8.2e-08 32.3 22.7 8.8e-06 25.7 12.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330834494|ref|YP_004409222.1| - 8.5e-07 28.7 18.9 0.00024 21.0 3.4 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834494|ref|YP_004409222.1| - 1.2e-06 28.6 13.6 3e-06 27.2 12.3 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834494|ref|YP_004409222.1| - 1.7e-05 24.9 11.5 3e-05 24.1 10.9 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330834494|ref|YP_004409222.1| - 4.1e-05 24.4 7.4 0.00059 20.7 1.2 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|330834494|ref|YP_004409222.1| - 0.00042 20.6 13.6 0.0029 18.0 4.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330834494|ref|YP_004409222.1| - 0.0012 19.4 8.5 0.01 16.4 1.0 2.5 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330834494|ref|YP_004409222.1| - 0.0027 18.5 6.9 0.0027 18.5 6.9 2.5 2 0 0 2 2 1 1 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330834494|ref|YP_004409222.1| - 0.0029 18.1 12.7 0.21 12.2 1.4 2.6 1 1 1 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330834494|ref|YP_004409222.1| - 0.0086 16.8 10.2 0.16 12.8 1.3 2.7 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|330834494|ref|YP_004409222.1| - 0.018 15.5 11.2 0.2 12.1 2.8 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain E1_dh PF00676.20 gi|330834494|ref|YP_004409222.1| - 0.068 12.1 0.0 0.23 10.4 0.0 1.8 2 0 0 2 2 2 0 Dehydrogenase E1 component PFOR_II PF17147.4 gi|330834494|ref|YP_004409222.1| - 0.091 13.1 0.0 0.25 11.7 0.0 1.8 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Fer4_22 PF17179.4 gi|330834494|ref|YP_004409222.1| - 0.2 12.5 9.1 0.26 12.2 2.2 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330834494|ref|YP_004409222.1| - 0.78 10.0 8.4 2.3 8.4 7.9 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|330834495|ref|YP_004409223.1| - 2.4e-28 99.4 0.0 3.1e-28 99.0 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Cob_adeno_trans PF01923.18 gi|330834496|ref|YP_004409224.1| - 1.2e-45 155.6 0.0 1.4e-45 155.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PsiE PF06146.12 gi|330834501|ref|YP_004409229.1| - 1.3e-05 25.4 5.5 1.3e-05 25.4 5.5 2.5 2 1 1 3 3 3 1 Phosphate-starvation-inducible E DUF3821 PF12863.7 gi|330834502|ref|YP_004409230.1| - 0.01 15.7 0.3 0.017 15.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3821) DUF3369 PF11849.8 gi|330834502|ref|YP_004409230.1| - 0.18 12.0 0.9 9 6.5 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3369) Glycos_transf_1 PF00534.20 gi|330834503|ref|YP_004409231.1| - 1.8e-33 115.5 0.0 3.6e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330834503|ref|YP_004409231.1| - 6.7e-23 81.6 0.0 1.1e-22 80.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|330834503|ref|YP_004409231.1| - 1.9e-05 23.6 1.3 0.067 11.8 0.0 3.0 2 1 1 3 3 3 3 Glycosyltransferase family 20 Glyco_trans_1_2 PF13524.6 gi|330834503|ref|YP_004409231.1| - 0.2 12.1 0.0 0.56 10.6 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferases group 1 Usp PF00582.26 gi|330834504|ref|YP_004409232.1| - 4.3e-37 127.8 0.4 4.7e-37 127.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|330834504|ref|YP_004409232.1| - 0.18 11.2 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel MMR_HSR1_C PF08438.10 gi|330834505|ref|YP_004409233.1| - 0.027 15.1 1.7 0.15 12.7 0.6 1.9 1 1 1 2 2 2 0 GTPase of unknown function C-terminal DNA_binding_1 PF01035.20 gi|330834507|ref|YP_004409235.1| - 1.9e-25 88.8 0.0 2.3e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.12 gi|330834507|ref|YP_004409235.1| - 0.014 15.0 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_28 PF13518.6 gi|330834507|ref|YP_004409235.1| - 0.039 14.1 0.0 0.065 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|330834507|ref|YP_004409235.1| - 0.046 13.6 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|330834507|ref|YP_004409235.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding tRNA-synt_2b PF00587.25 gi|330834508|ref|YP_004409236.1| - 1.1e-40 139.5 0.0 2.6e-40 138.3 0.0 1.6 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330834508|ref|YP_004409236.1| - 6e-19 68.0 0.3 1.8e-18 66.5 0.3 1.9 1 0 0 1 1 1 1 Anticodon binding domain Glyco_tran_28_C PF04101.16 gi|330834509|ref|YP_004409237.1| - 3.9e-06 26.9 0.0 1.1e-05 25.5 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain HhH-GPD PF00730.25 gi|330834510|ref|YP_004409238.1| - 2.9e-09 37.3 0.0 3.5e-09 37.1 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|330834510|ref|YP_004409238.1| - 0.00061 19.5 0.3 0.0042 16.9 0.0 2.5 3 0 0 3 3 3 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|330834510|ref|YP_004409238.1| - 0.0089 16.3 0.7 0.014 15.7 0.7 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|330834510|ref|YP_004409238.1| - 0.018 15.7 0.1 6.1 7.5 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix domain ATP-grasp_2 PF08442.10 gi|330834511|ref|YP_004409239.1| - 4.7e-25 88.4 1.4 1.7e-23 83.2 1.1 3.2 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|330834511|ref|YP_004409239.1| - 8.6e-16 58.1 0.8 1.4e-15 57.5 0.8 1.3 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|330834511|ref|YP_004409239.1| - 7.6e-09 35.3 0.1 5.3e-05 22.8 0.0 3.7 3 1 0 3 3 3 2 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330834511|ref|YP_004409239.1| - 0.054 13.0 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CoA_binding PF02629.19 gi|330834512|ref|YP_004409240.1| - 2.9e-23 82.4 0.6 2.9e-23 82.4 0.6 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|330834512|ref|YP_004409240.1| - 1.6e-15 57.2 1.2 2.5e-15 56.6 1.2 1.3 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|330834512|ref|YP_004409240.1| - 1.6e-10 41.5 0.2 5.3e-09 36.6 0.1 2.2 2 0 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|330834512|ref|YP_004409240.1| - 2.6e-09 37.0 0.1 5.6e-09 35.9 0.0 1.6 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain GFO_IDH_MocA PF01408.22 gi|330834512|ref|YP_004409240.1| - 0.0078 17.0 0.1 0.058 14.2 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Phage_sheath_1 PF04984.14 gi|330834512|ref|YP_004409240.1| - 0.068 13.0 0.0 0.28 11.0 0.0 1.9 1 1 1 2 2 2 0 Phage tail sheath protein subtilisin-like domain PNP_UDP_1 PF01048.20 gi|330834515|ref|YP_004409243.1| - 7.6e-38 130.1 0.0 8.3e-38 129.9 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily PriCT_2 PF08707.11 gi|330834515|ref|YP_004409243.1| - 0.21 12.0 0.0 0.34 11.3 0.0 1.3 1 0 0 1 1 1 0 Primase C terminal 2 (PriCT-2) HD PF01966.22 gi|330834516|ref|YP_004409244.1| - 3.7e-11 43.3 0.3 2.3e-10 40.8 0.1 2.2 2 0 0 2 2 2 1 HD domain MDD_C PF18376.1 gi|330834517|ref|YP_004409245.1| - 1.7e-36 125.8 0.1 8.4e-36 123.5 0.0 1.9 1 1 1 2 2 2 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|330834517|ref|YP_004409245.1| - 1.9e-07 31.2 3.5 3.9e-07 30.2 3.5 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_N PF00288.26 gi|330834518|ref|YP_004409246.1| - 4.5e-14 52.4 0.2 8.9e-14 51.5 0.2 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330834518|ref|YP_004409246.1| - 4.6e-08 33.3 0.1 1.3e-07 31.9 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Stk19 PF10494.9 gi|330834519|ref|YP_004409247.1| - 0.029 14.1 0.5 0.035 13.8 0.5 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 FAD_binding_1 PF00667.20 gi|330834519|ref|YP_004409247.1| - 0.14 11.8 2.2 0.56 9.7 0.2 2.1 1 1 1 2 2 2 0 FAD binding domain TAFH PF07531.14 gi|330834519|ref|YP_004409247.1| - 0.18 11.9 1.7 2.2 8.5 0.3 2.7 3 1 0 3 3 3 0 NHR1 homology to TAF HTH_WhiA PF02650.14 gi|330834519|ref|YP_004409247.1| - 3.7 7.9 6.0 6.8 7.1 0.5 3.1 3 1 0 3 3 3 0 WhiA C-terminal HTH domain HTH_45 PF14947.6 gi|330834520|ref|YP_004409248.1| - 1.7e-24 85.6 0.2 2.1e-24 85.3 0.2 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix Mrr_N PF14338.6 gi|330834520|ref|YP_004409248.1| - 0.0053 16.9 0.0 0.092 12.9 0.0 2.1 1 1 1 2 2 2 1 Mrr N-terminal domain HTH_5 PF01022.20 gi|330834520|ref|YP_004409248.1| - 0.063 13.2 0.2 0.12 12.3 0.1 1.6 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family ANAPC2 PF08672.11 gi|330834520|ref|YP_004409248.1| - 0.15 12.6 1.7 0.57 10.7 0.1 2.3 2 1 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 Halogen_Hydrol PF10112.9 gi|330834521|ref|YP_004409249.1| - 0.032 14.3 0.1 0.086 12.9 0.0 1.7 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF4116 PF13475.6 gi|330834522|ref|YP_004409250.1| - 0.15 11.8 1.4 0.62 9.8 0.2 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4116) GCV_H PF01597.19 gi|330834523|ref|YP_004409251.1| - 1.2e-28 99.4 0.1 1.4e-28 99.2 0.1 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|330834523|ref|YP_004409251.1| - 0.00057 19.7 0.0 0.0009 19.0 0.0 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme HAD_2 PF13419.6 gi|330834524|ref|YP_004409252.1| - 0.00016 21.8 0.0 0.00026 21.1 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330834524|ref|YP_004409252.1| - 0.0015 18.9 0.0 0.0018 18.6 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase QueC PF06508.13 gi|330834525|ref|YP_004409253.1| - 2.8e-22 79.3 0.3 4.6e-21 75.3 0.3 2.0 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC STOP PF05217.12 gi|330834525|ref|YP_004409253.1| - 0.0063 16.8 3.8 0.0095 16.2 1.4 2.3 2 0 0 2 2 2 1 STOP protein Rtt102p PF09510.10 gi|330834526|ref|YP_004409254.1| - 0.014 15.6 0.2 0.018 15.2 0.2 1.2 1 0 0 1 1 1 0 Rtt102p-like transcription regulator protein TrmB PF01978.19 gi|330834527|ref|YP_004409255.1| - 2.7e-15 56.0 0.0 4e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|330834527|ref|YP_004409255.1| - 5.3e-09 35.9 0.0 9e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|330834527|ref|YP_004409255.1| - 1.5e-07 31.2 0.0 2.7e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|330834527|ref|YP_004409255.1| - 2.3e-06 27.0 0.1 3.7e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|330834527|ref|YP_004409255.1| - 2.8e-05 24.5 0.0 5.3e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|330834527|ref|YP_004409255.1| - 5.5e-05 23.0 0.0 7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|330834527|ref|YP_004409255.1| - 0.00014 21.7 0.0 0.00028 20.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|330834527|ref|YP_004409255.1| - 0.00042 20.5 0.0 0.00074 19.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.7 gi|330834527|ref|YP_004409255.1| - 0.0048 16.9 0.0 0.011 15.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|330834527|ref|YP_004409255.1| - 0.0054 16.5 0.0 0.0098 15.7 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.6 gi|330834527|ref|YP_004409255.1| - 0.021 14.8 0.1 0.045 13.7 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|330834527|ref|YP_004409255.1| - 0.028 14.5 0.0 0.04 14.0 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330834527|ref|YP_004409255.1| - 0.032 14.2 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GntR PF00392.21 gi|330834527|ref|YP_004409255.1| - 0.034 13.8 0.0 0.083 12.5 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|330834527|ref|YP_004409255.1| - 0.034 13.9 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|330834527|ref|YP_004409255.1| - 0.053 13.5 0.1 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 HTH domain Mga PF05043.13 gi|330834527|ref|YP_004409255.1| - 0.064 13.9 0.0 0.11 13.1 0.0 1.3 1 0 0 1 1 1 0 Mga helix-turn-helix domain DUF4423 PF14394.6 gi|330834527|ref|YP_004409255.1| - 0.066 12.9 0.0 0.085 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|330834527|ref|YP_004409255.1| - 0.077 13.1 0.0 0.15 12.2 0.0 1.5 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.6 gi|330834527|ref|YP_004409255.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HRDC PF00570.23 gi|330834527|ref|YP_004409255.1| - 0.15 12.1 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 HRDC domain DUF1296 PF06972.11 gi|330834527|ref|YP_004409255.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1296) TusA PF01206.17 gi|330834528|ref|YP_004409256.1| - 9.8e-15 54.1 0.2 1.1e-14 53.9 0.2 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA TrmB PF01978.19 gi|330834529|ref|YP_004409257.1| - 0.0023 17.8 0.0 0.0028 17.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330834529|ref|YP_004409257.1| - 0.023 14.3 0.1 0.047 13.3 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|330834529|ref|YP_004409257.1| - 0.023 15.2 0.0 0.032 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|330834529|ref|YP_004409257.1| - 0.035 14.0 0.1 0.048 13.6 0.1 1.2 1 0 0 1 1 1 0 HTH domain SMC_ScpB PF04079.16 gi|330834529|ref|YP_004409257.1| - 0.041 13.5 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB HTH_36 PF13730.6 gi|330834529|ref|YP_004409257.1| - 0.059 13.3 0.1 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|330834529|ref|YP_004409257.1| - 0.095 12.6 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family CoA_binding_2 PF13380.6 gi|330834530|ref|YP_004409258.1| - 8.3e-36 123.0 0.0 1e-35 122.8 0.0 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|330834530|ref|YP_004409258.1| - 0.0065 17.1 0.0 0.0097 16.6 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain BPL_LplA_LipB PF03099.19 gi|330834532|ref|YP_004409260.1| - 3.2e-06 27.1 0.0 9.2e-06 25.6 0.0 1.8 2 1 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|330834532|ref|YP_004409260.1| - 0.00071 19.5 0.6 0.022 14.7 0.0 2.6 2 0 0 2 2 2 1 Bacterial lipoate protein ligase C-terminus Arg_decarbox_C PF17944.1 gi|330834532|ref|YP_004409260.1| - 0.0068 16.9 0.1 1.2 9.8 0.0 2.7 2 1 0 2 2 2 1 Arginine decarboxylase C-terminal helical extension Radical_SAM PF04055.21 gi|330834533|ref|YP_004409261.1| - 5e-08 33.5 0.0 1.1e-07 32.3 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330834533|ref|YP_004409261.1| - 0.0073 16.6 0.1 0.011 16.0 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330834533|ref|YP_004409261.1| - 0.021 14.9 0.2 0.054 13.6 0.2 1.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|330834534|ref|YP_004409262.1| - 2.8e-11 44.1 1.1 8.4e-11 42.5 0.1 2.1 2 1 1 3 3 3 1 Radical SAM superfamily Ntox14 PF15522.6 gi|330834534|ref|YP_004409262.1| - 0.048 13.1 0.0 0.076 12.4 0.0 1.2 1 0 0 1 1 1 0 Novel toxin 14 Fer4_12 PF13353.6 gi|330834534|ref|YP_004409262.1| - 0.05 13.9 0.0 0.093 13.0 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S single cluster domain Hist_deacetyl PF00850.19 gi|330834536|ref|YP_004409264.1| - 2e-50 172.0 0.0 3.5e-50 171.2 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain DUF1641 PF07849.11 gi|330834537|ref|YP_004409265.1| - 1.7e-11 43.8 0.3 1.7e-11 43.8 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) MgtE_N PF03448.17 gi|330834537|ref|YP_004409265.1| - 1.1e-05 26.0 30.4 0.12 13.0 0.6 6.1 3 2 3 6 6 6 4 MgtE intracellular N domain DnaB_bind PF10410.9 gi|330834537|ref|YP_004409265.1| - 0.0021 18.2 0.4 20 5.5 0.0 5.1 4 2 2 6 6 6 1 DnaB-helicase binding domain of primase hnRNP_Q_AcD PF18360.1 gi|330834537|ref|YP_004409265.1| - 0.26 11.3 4.2 2.7 8.0 0.5 4.2 2 2 2 5 5 5 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain HTH_22 PF13309.6 gi|330834537|ref|YP_004409265.1| - 0.47 10.6 2.8 29 4.8 0.0 4.2 4 1 1 5 5 5 0 HTH domain DUF3847 PF12958.7 gi|330834537|ref|YP_004409265.1| - 2 8.6 12.9 1e+02 3.1 0.0 6.5 5 2 2 7 7 7 0 Protein of unknown function (DUF3847) PIN_5 PF08745.11 gi|330834538|ref|YP_004409266.1| - 0.0015 18.0 0.2 0.0021 17.5 0.2 1.2 1 0 0 1 1 1 1 PINc domain ribonuclease DUF3575 PF12099.8 gi|330834538|ref|YP_004409266.1| - 0.039 13.3 0.0 0.046 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3575) Thioredoxin_3 PF13192.6 gi|330834539|ref|YP_004409267.1| - 5.4e-13 48.8 0.1 9.8e-13 48.0 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|330834539|ref|YP_004409267.1| - 0.00012 22.5 0.1 0.00018 21.8 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|330834539|ref|YP_004409267.1| - 0.0011 19.1 0.3 0.0044 17.2 0.2 1.9 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin PF00085.20 gi|330834539|ref|YP_004409267.1| - 0.0032 17.4 0.0 0.0073 16.3 0.0 1.6 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|330834539|ref|YP_004409267.1| - 0.024 15.1 0.1 0.09 13.2 0.0 1.6 1 1 1 2 2 2 0 Thioredoxin-like domain Pyr_redox_2 PF07992.14 gi|330834541|ref|YP_004409269.1| - 7.4e-46 156.7 1.8 1e-45 156.3 1.8 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834541|ref|YP_004409269.1| - 7.8e-16 58.4 6.3 8.9e-12 45.4 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330834541|ref|YP_004409269.1| - 3.1e-14 53.1 0.0 7.3e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|330834541|ref|YP_004409269.1| - 1.1e-09 38.1 3.7 7.8e-09 35.2 1.3 3.1 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330834541|ref|YP_004409269.1| - 3.4e-09 36.3 4.2 0.00075 18.7 0.3 2.9 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|330834541|ref|YP_004409269.1| - 2.6e-08 33.6 3.8 1.2e-05 24.8 0.3 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330834541|ref|YP_004409269.1| - 2.5e-07 30.1 7.2 0.00012 21.4 2.0 2.7 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|330834541|ref|YP_004409269.1| - 2.2e-06 27.2 3.6 0.00043 19.6 1.0 2.2 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.14 gi|330834541|ref|YP_004409269.1| - 5.8e-06 25.4 2.5 0.00011 21.2 0.1 2.3 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.14 gi|330834541|ref|YP_004409269.1| - 1e-05 24.4 4.6 0.019 13.7 0.9 3.1 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|330834541|ref|YP_004409269.1| - 3.6e-05 23.9 5.6 0.032 14.5 1.7 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|330834541|ref|YP_004409269.1| - 0.00075 18.8 2.0 0.0086 15.3 0.8 2.4 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|330834541|ref|YP_004409269.1| - 0.0012 18.0 0.0 0.018 14.2 0.0 2.2 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|330834541|ref|YP_004409269.1| - 0.0024 17.2 2.6 0.26 10.6 0.0 2.7 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_7 PF13241.6 gi|330834541|ref|YP_004409269.1| - 0.0041 17.5 1.1 1.2 9.6 0.0 2.7 3 0 0 3 3 3 1 Putative NAD(P)-binding DAO PF01266.24 gi|330834541|ref|YP_004409269.1| - 0.0062 16.2 12.2 0.045 13.3 0.4 3.3 3 1 1 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|330834541|ref|YP_004409269.1| - 0.0063 16.4 1.7 0.058 13.3 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|330834541|ref|YP_004409269.1| - 0.055 12.5 0.6 0.48 9.4 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Pox_vIL-18BP PF05566.12 gi|330834541|ref|YP_004409269.1| - 0.1 12.8 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein DrsE PF02635.15 gi|330834542|ref|YP_004409270.1| - 7.4e-22 77.9 0.0 8.6e-22 77.7 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|330834542|ref|YP_004409270.1| - 5.5e-13 49.1 0.4 1.6e-05 24.9 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE_2 PF13686.6 gi|330834543|ref|YP_004409271.1| - 1.4e-28 99.7 3.4 2.4e-26 92.5 3.4 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|330834543|ref|YP_004409271.1| - 1.5e-09 38.3 0.1 5.2e-09 36.5 0.1 1.7 1 1 0 1 1 1 1 DsrE/DsrF-like family SinI PF08671.10 gi|330834543|ref|YP_004409271.1| - 0.019 14.8 0.0 0.044 13.6 0.0 1.6 1 0 0 1 1 1 0 Anti-repressor SinI TusA PF01206.17 gi|330834544|ref|YP_004409272.1| - 3.1e-24 84.6 0.0 3.5e-24 84.4 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Fer4_8 PF13183.6 gi|330834545|ref|YP_004409273.1| - 9.2e-08 32.4 15.1 7.5e-07 29.5 7.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330834545|ref|YP_004409273.1| - 1e-07 32.4 7.2 2.2e-07 31.3 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834545|ref|YP_004409273.1| - 8.4e-07 29.0 6.4 1.7e-06 28.1 6.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834545|ref|YP_004409273.1| - 2.5e-06 27.5 9.0 1.3e-05 25.3 9.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330834545|ref|YP_004409273.1| - 3e-05 24.5 9.5 7.9e-05 23.2 9.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330834545|ref|YP_004409273.1| - 0.00043 21.2 8.4 0.0013 19.7 8.4 1.9 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|330834545|ref|YP_004409273.1| - 0.00072 19.5 12.1 0.01 15.9 2.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330834545|ref|YP_004409273.1| - 0.0021 18.4 10.5 0.0039 17.6 1.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_20 PF14691.6 gi|330834545|ref|YP_004409273.1| - 0.043 13.6 6.2 0.059 13.1 0.3 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|330834545|ref|YP_004409273.1| - 0.12 12.5 10.3 1.9 8.6 10.7 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834545|ref|YP_004409273.1| - 0.19 11.9 13.1 1.3 9.3 2.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|330834545|ref|YP_004409273.1| - 0.37 10.7 16.9 0.17 11.8 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330834545|ref|YP_004409273.1| - 1.2 9.4 5.2 12 6.1 0.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330834545|ref|YP_004409273.1| - 4.4 7.9 7.9 4.3 8.0 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|330834545|ref|YP_004409273.1| - 6.3 7.7 12.3 2.4 9.1 1.6 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain CCG PF02754.16 gi|330834546|ref|YP_004409274.1| - 1.5e-07 31.5 0.0 6.5e-06 26.3 0.0 3.0 2 1 0 2 2 2 1 Cysteine-rich domain Pyr_redox_2 PF07992.14 gi|330834547|ref|YP_004409275.1| - 2e-18 66.7 0.1 3.2e-18 66.0 0.1 1.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330834547|ref|YP_004409275.1| - 6.2e-10 38.9 0.2 1.8e-07 30.7 0.2 2.3 1 1 1 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|330834547|ref|YP_004409275.1| - 8.3e-09 34.6 0.0 0.0025 16.6 0.0 2.2 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|330834547|ref|YP_004409275.1| - 5.9e-08 32.2 0.0 5.2e-06 25.8 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|330834547|ref|YP_004409275.1| - 2e-06 27.9 0.0 4.1e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|330834547|ref|YP_004409275.1| - 5.7e-06 26.8 0.5 0.00077 20.0 0.0 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|330834547|ref|YP_004409275.1| - 1.3e-05 24.7 0.6 6.8e-05 22.4 0.1 2.1 2 1 1 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.24 gi|330834547|ref|YP_004409275.1| - 1.9e-05 24.5 0.8 0.0047 16.6 0.1 2.5 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|330834547|ref|YP_004409275.1| - 3.5e-05 23.2 0.6 0.003 16.9 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330834547|ref|YP_004409275.1| - 0.00024 20.3 0.0 0.03 13.4 0.0 2.3 2 0 0 2 2 2 1 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|330834547|ref|YP_004409275.1| - 0.00031 20.2 0.0 0.41 9.9 0.1 3.0 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase Thi4 PF01946.17 gi|330834547|ref|YP_004409275.1| - 0.0024 17.1 0.0 0.0038 16.5 0.0 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|330834547|ref|YP_004409275.1| - 0.016 14.5 0.0 0.036 13.4 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|330834547|ref|YP_004409275.1| - 0.018 14.1 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein IlvN PF07991.12 gi|330834547|ref|YP_004409275.1| - 0.073 12.6 0.1 0.21 11.2 0.1 2.0 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_9 PF13454.6 gi|330834547|ref|YP_004409275.1| - 0.13 12.3 0.0 2.2 8.3 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|330834547|ref|YP_004409275.1| - 0.13 12.7 0.0 0.3 11.6 0.0 1.7 1 0 0 1 1 1 0 Putative NAD(P)-binding Fer4_9 PF13187.6 gi|330834549|ref|YP_004409277.1| - 2.1e-08 34.2 9.7 1.2e-07 31.7 10.4 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330834549|ref|YP_004409277.1| - 2.1e-08 34.5 6.6 3.7e-08 33.7 6.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330834549|ref|YP_004409277.1| - 4.4e-07 30.3 7.5 1.6e-06 28.5 8.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330834549|ref|YP_004409277.1| - 2.5e-06 28.0 5.9 4e-06 27.3 5.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330834549|ref|YP_004409277.1| - 3.5e-05 24.6 3.0 0.0051 17.7 0.8 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|330834549|ref|YP_004409277.1| - 0.0023 18.0 10.0 0.01 15.9 10.5 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330834549|ref|YP_004409277.1| - 0.01 16.6 4.5 0.82 10.5 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330834549|ref|YP_004409277.1| - 0.031 14.8 13.1 0.38 11.4 2.7 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|330834549|ref|YP_004409277.1| - 0.044 13.6 0.6 0.044 13.6 0.6 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|330834549|ref|YP_004409277.1| - 0.073 13.2 8.8 0.33 11.1 8.8 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330834549|ref|YP_004409277.1| - 0.11 12.3 12.6 0.28 11.1 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330834549|ref|YP_004409277.1| - 0.56 10.4 13.8 0.26 11.5 2.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330834549|ref|YP_004409277.1| - 5.4 7.2 7.9 1.3 9.3 1.2 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain CCG PF02754.16 gi|330834550|ref|YP_004409278.1| - 1.4e-28 98.9 0.4 2.3e-15 56.6 0.2 2.6 3 0 0 3 3 3 2 Cysteine-rich domain DUF202 PF02656.15 gi|330834551|ref|YP_004409279.1| - 1.6e-15 57.3 2.7 1.6e-15 57.3 2.7 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF202) DUF2162 PF09930.9 gi|330834551|ref|YP_004409279.1| - 0.0018 17.7 5.9 0.002 17.6 5.9 1.0 1 0 0 1 1 1 1 Predicted transporter (DUF2162) Claudin_2 PF13903.6 gi|330834551|ref|YP_004409279.1| - 0.17 11.6 4.5 0.25 11.1 4.5 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Na_Ca_ex PF01699.24 gi|330834552|ref|YP_004409280.1| - 6.8e-27 94.3 27.9 2.4e-15 56.8 12.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Ammonium_transp PF00909.21 gi|330834553|ref|YP_004409281.1| - 1.9e-93 313.3 29.5 2.2e-93 313.1 29.5 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family DUF3216 PF11505.8 gi|330834554|ref|YP_004409282.1| - 0.091 13.0 0.0 0.093 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3216) Wzy_C PF04932.15 gi|330834559|ref|YP_004409287.1| - 0.13 11.9 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 O-Antigen ligase DDE_Tnp_1 PF01609.21 gi|330834560|ref|YP_004409288.1| - 0.0017 18.1 0.4 0.0018 18.0 0.4 1.0 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|330834560|ref|YP_004409288.1| - 0.049 13.3 0.3 0.051 13.2 0.3 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease MFS_1 PF07690.16 gi|330834561|ref|YP_004409289.1| - 1.5e-19 70.1 50.1 1.5e-19 70.1 50.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily BatA PF07584.11 gi|330834561|ref|YP_004409289.1| - 0.097 13.1 0.0 0.097 13.1 0.0 2.8 3 0 0 3 3 3 0 Aerotolerance regulator N-terminal HTH_Crp_2 PF13545.6 gi|330834565|ref|YP_004409293.1| - 0.039 13.9 0.1 0.051 13.6 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF1598 PF07643.11 gi|330834566|ref|YP_004409294.1| - 0.12 12.6 0.1 3.6 7.9 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1598) TPR_2 PF07719.17 gi|330834567|ref|YP_004409295.1| - 4.3e-22 76.4 8.6 0.0081 16.2 0.0 7.1 7 0 0 7 7 7 6 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330834567|ref|YP_004409295.1| - 8.3e-15 53.9 10.3 4.9e-05 23.0 0.1 6.1 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330834567|ref|YP_004409295.1| - 7.1e-13 47.7 15.4 0.001 19.1 0.1 5.8 6 0 0 6 6 6 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330834567|ref|YP_004409295.1| - 1.4e-12 47.1 6.0 0.015 15.7 0.1 4.8 5 0 0 5 5 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330834567|ref|YP_004409295.1| - 3.3e-11 42.7 16.1 1.5e-05 24.6 0.1 5.5 5 1 1 6 6 6 3 TPR repeat TPR_19 PF14559.6 gi|330834567|ref|YP_004409295.1| - 4.2e-10 40.0 8.6 0.0014 19.1 0.0 4.4 3 2 1 4 4 4 3 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330834567|ref|YP_004409295.1| - 8.2e-09 35.6 0.7 0.2 11.9 0.0 4.1 4 0 0 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|330834567|ref|YP_004409295.1| - 3.2e-08 33.8 6.6 0.21 11.9 0.1 4.9 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330834567|ref|YP_004409295.1| - 3.2e-08 33.7 5.3 0.17 12.8 0.0 5.3 3 1 3 6 6 5 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330834567|ref|YP_004409295.1| - 6.9e-08 33.0 3.4 0.13 12.9 0.0 4.4 2 1 3 5 5 5 3 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330834567|ref|YP_004409295.1| - 1.2e-06 28.6 0.9 0.44 10.7 0.1 4.7 3 1 3 6 6 6 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330834567|ref|YP_004409295.1| - 1.1e-05 25.8 5.9 5.7 7.8 0.1 6.0 7 0 0 7 7 7 1 Tetratricopeptide repeat TPR_7 PF13176.6 gi|330834567|ref|YP_004409295.1| - 0.00019 21.2 3.2 0.27 11.4 0.1 3.6 4 0 0 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|330834567|ref|YP_004409295.1| - 0.0003 19.8 0.7 0.0042 16.1 0.1 2.7 2 1 2 4 4 4 1 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|330834567|ref|YP_004409295.1| - 0.00074 19.5 0.1 0.039 14.0 0.1 2.6 2 1 1 3 3 3 2 Putative TPR-like repeat MIT PF04212.18 gi|330834567|ref|YP_004409295.1| - 0.00085 19.4 0.7 0.094 12.8 0.0 3.5 3 1 0 3 3 3 1 MIT (microtubule interacting and transport) domain SHNi-TPR PF10516.9 gi|330834567|ref|YP_004409295.1| - 0.19 11.2 1.0 6.7 6.3 0.2 3.3 3 0 0 3 3 3 0 SHNi-TPR TPR_10 PF13374.6 gi|330834567|ref|YP_004409295.1| - 0.22 11.4 8.4 21 5.2 0.1 4.9 5 0 0 5 5 5 0 Tetratricopeptide repeat EamA PF00892.20 gi|330834568|ref|YP_004409296.1| - 3.9e-22 78.9 33.9 7e-15 55.4 12.1 2.5 2 1 0 2 2 2 2 EamA-like transporter family ABC_tran PF00005.27 gi|330834569|ref|YP_004409297.1| - 1.1e-33 116.7 0.0 1.4e-33 116.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330834569|ref|YP_004409297.1| - 8.1e-08 32.4 0.3 0.0087 15.9 0.5 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330834569|ref|YP_004409297.1| - 1.5e-06 27.8 0.3 0.023 14.1 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|330834569|ref|YP_004409297.1| - 2.1e-05 24.4 0.1 0.0047 16.7 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|330834569|ref|YP_004409297.1| - 0.00013 21.6 0.2 0.00023 20.9 0.2 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|330834569|ref|YP_004409297.1| - 0.00051 20.5 0.1 0.00081 19.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330834569|ref|YP_004409297.1| - 0.00054 20.2 0.6 0.0045 17.3 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|330834569|ref|YP_004409297.1| - 0.0024 18.4 0.5 0.0043 17.6 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|330834569|ref|YP_004409297.1| - 0.011 15.3 0.3 0.029 13.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|330834569|ref|YP_004409297.1| - 0.014 15.3 0.1 0.027 14.4 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_33 PF13671.6 gi|330834569|ref|YP_004409297.1| - 0.031 14.4 0.4 0.074 13.2 0.4 1.8 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|330834569|ref|YP_004409297.1| - 0.041 13.6 0.0 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.12 gi|330834569|ref|YP_004409297.1| - 0.054 13.4 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 2 0 NACHT domain PhoH PF02562.16 gi|330834569|ref|YP_004409297.1| - 0.07 12.6 0.1 0.14 11.6 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.6 gi|330834569|ref|YP_004409297.1| - 0.092 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330834569|ref|YP_004409297.1| - 0.12 12.1 0.3 0.28 10.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|330834569|ref|YP_004409297.1| - 0.14 12.0 0.0 0.25 11.1 0.0 1.4 2 0 0 2 2 2 0 AAA domain cobW PF02492.19 gi|330834569|ref|YP_004409297.1| - 0.14 11.8 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NPCBM_assoc PF10633.9 gi|330834570|ref|YP_004409298.1| - 3.2e-11 43.3 9.5 0.0088 16.3 0.0 6.8 6 0 0 6 6 6 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|330834570|ref|YP_004409298.1| - 1e-05 25.7 27.9 0.0039 17.4 0.1 6.2 6 1 0 6 6 6 3 CARDB Transglut_C PF00927.22 gi|330834570|ref|YP_004409298.1| - 3.4e-05 23.9 9.6 0.0012 19.0 0.5 4.4 5 0 0 5 5 5 2 Transglutaminase family, C-terminal ig like domain DM13 PF10517.9 gi|330834570|ref|YP_004409298.1| - 0.091 13.4 0.0 0.32 11.6 0.0 1.9 1 0 0 1 1 1 0 Electron transfer DM13 Alpha_adaptinC2 PF02883.20 gi|330834570|ref|YP_004409298.1| - 0.11 12.8 0.1 0.11 12.8 0.1 6.4 5 3 2 7 7 7 0 Adaptin C-terminal domain DUF11 PF01345.18 gi|330834570|ref|YP_004409298.1| - 0.21 11.9 44.2 0.024 14.9 2.4 7.0 5 2 1 6 6 6 0 Domain of unknown function DUF11 AP3B1_C PF14796.6 gi|330834570|ref|YP_004409298.1| - 0.39 11.0 8.5 1.5 9.0 0.0 4.1 4 0 0 4 4 4 0 Clathrin-adaptor complex-3 beta-1 subunit C-terminal TMEM154 PF15102.6 gi|330834570|ref|YP_004409298.1| - 0.51 10.2 4.8 1.3 8.9 4.8 1.7 1 0 0 1 1 1 0 TMEM154 protein family GldH_lipo PF14109.6 gi|330834570|ref|YP_004409298.1| - 1.5 9.6 3.8 5.5 7.8 0.2 3.0 2 1 1 3 3 3 0 GldH lipoprotein Baculo_11_kDa PF06143.11 gi|330834570|ref|YP_004409298.1| - 3.7 7.2 6.4 10 5.8 6.4 1.7 1 0 0 1 1 1 0 Baculovirus 11 kDa family Flo11 PF10182.9 gi|330834570|ref|YP_004409298.1| - 7.6 6.7 10.4 5.6 7.1 4.2 3.4 3 1 0 3 3 3 0 Flo11 domain FtsX PF02687.21 gi|330834571|ref|YP_004409299.1| - 1.4e-14 54.3 1.9 1.4e-14 54.3 1.9 3.2 3 0 0 3 3 3 2 FtsX-like permease family MacB_PCD PF12704.7 gi|330834571|ref|YP_004409299.1| - 2.6e-13 50.8 3.7 2.6e-13 50.8 3.7 1.9 3 0 0 3 3 3 1 MacB-like periplasmic core domain Isochorismatase PF00857.20 gi|330834572|ref|YP_004409300.1| - 2.6e-39 135.2 0.0 3.1e-39 134.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DHHA1 PF02272.19 gi|330834573|ref|YP_004409301.1| - 2.5e-07 31.2 0.0 6.6e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|330834573|ref|YP_004409301.1| - 0.011 16.0 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 0 DHH family SPK PF04435.18 gi|330834573|ref|YP_004409301.1| - 0.079 13.4 0.6 0.17 12.3 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF545) DUF2833 PF11090.8 gi|330834573|ref|YP_004409301.1| - 0.082 13.3 0.1 1.3 9.5 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2833) AhpC-TSA PF00578.21 gi|330834574|ref|YP_004409302.1| - 1.2e-31 109.2 0.0 1.6e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330834574|ref|YP_004409302.1| - 1.2e-12 47.8 0.0 1.6e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|330834574|ref|YP_004409302.1| - 3.2e-06 26.9 0.1 6.7e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|330834574|ref|YP_004409302.1| - 0.0014 18.8 0.0 0.0083 16.2 0.0 2.0 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Metallophos PF00149.28 gi|330834575|ref|YP_004409303.1| - 2.4e-11 44.5 0.0 2.9e-11 44.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|330834575|ref|YP_004409303.1| - 4.3e-09 36.8 0.0 3.9e-08 33.7 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain HrpB_C PF08482.10 gi|330834575|ref|YP_004409303.1| - 0.046 14.1 0.0 0.12 12.8 0.0 1.7 1 0 0 1 1 1 0 ATP-dependent helicase C-terminal DUF763 PF05559.11 gi|330834576|ref|YP_004409304.1| - 8e-115 383.3 0.0 9.3e-115 383.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Citrate_synt PF00285.21 gi|330834577|ref|YP_004409305.1| - 5.6e-124 413.9 0.0 6.4e-124 413.7 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF16 PF01519.16 gi|330834577|ref|YP_004409305.1| - 0.023 15.2 0.1 0.14 12.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF16 PhoU_div PF01865.16 gi|330834578|ref|YP_004409306.1| - 6.5e-11 42.0 11.3 9.3e-11 41.5 11.3 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF47 CHDCT2 PF08074.11 gi|330834578|ref|YP_004409306.1| - 0.045 13.9 1.6 1.2 9.3 0.1 2.4 2 1 0 2 2 2 0 CHDCT2 (NUC038) domain Hom_end PF05204.14 gi|330834579|ref|YP_004409307.1| - 0.061 13.5 0.1 0.12 12.6 0.1 1.4 1 0 0 1 1 1 0 Homing endonuclease RHH_1 PF01402.21 gi|330834579|ref|YP_004409307.1| - 0.066 13.2 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF4898 PF16239.5 gi|330834580|ref|YP_004409308.1| - 0.0014 18.5 0.3 0.0017 18.3 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4898) Thioredoxin_2 PF13098.6 gi|330834580|ref|YP_004409308.1| - 0.093 13.2 0.0 0.14 12.7 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain RHH_1 PF01402.21 gi|330834581|ref|YP_004409309.1| - 2.1e-05 24.3 0.0 3.7e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CopG_antitoxin PF12441.8 gi|330834581|ref|YP_004409309.1| - 0.021 15.3 0.0 0.027 15.0 0.0 1.2 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system PHO4 PF01384.20 gi|330834582|ref|YP_004409310.1| - 1.1e-30 106.9 38.2 2.1e-24 86.2 24.6 2.8 1 1 1 2 2 2 2 Phosphate transporter family FA_desaturase PF00487.24 gi|330834582|ref|YP_004409310.1| - 0.74 9.6 5.6 0.73 9.6 3.2 2.0 1 1 1 2 2 2 0 Fatty acid desaturase EamA PF00892.20 gi|330834584|ref|YP_004409312.1| - 2.6e-28 98.9 43.0 5.7e-17 62.2 19.1 2.2 2 0 0 2 2 2 2 EamA-like transporter family UAA PF08449.11 gi|330834584|ref|YP_004409312.1| - 0.011 15.0 2.4 0.011 15.0 2.4 3.1 2 1 0 3 3 3 0 UAA transporter family OFeT_1 PF16955.5 gi|330834585|ref|YP_004409313.1| - 4.5e-87 291.1 17.4 5e-87 290.9 17.4 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter DUF4131 PF13567.6 gi|330834585|ref|YP_004409313.1| - 9.5 5.8 11.6 0.75 9.4 1.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Sugar_tr PF00083.24 gi|330834586|ref|YP_004409314.1| - 1.6e-50 172.3 18.0 1.9e-50 172.1 18.0 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330834586|ref|YP_004409314.1| - 3.1e-28 98.7 31.8 2.7e-27 95.6 28.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HAD_2 PF13419.6 gi|330834587|ref|YP_004409315.1| - 2.1e-12 47.5 0.0 2.8e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330834587|ref|YP_004409315.1| - 1e-09 39.0 0.0 1.3e-09 38.7 0.0 1.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|330834587|ref|YP_004409315.1| - 0.00022 21.2 0.0 0.0006 19.8 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|330834587|ref|YP_004409315.1| - 0.0044 17.1 0.0 0.0097 16.0 0.0 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase TusA PF01206.17 gi|330834588|ref|YP_004409316.1| - 1.4e-08 34.4 0.1 1.7e-08 34.2 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 gi|330834589|ref|YP_004409317.1| - 1.4e-41 142.6 1.6 4e-41 141.2 1.6 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834589|ref|YP_004409317.1| - 3.2e-18 66.1 0.7 1.5e-15 57.5 0.3 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330834589|ref|YP_004409317.1| - 6.5e-08 32.2 0.0 1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330834589|ref|YP_004409317.1| - 3.9e-05 23.4 0.9 0.3 10.6 0.0 3.3 2 1 1 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330834589|ref|YP_004409317.1| - 0.00049 20.3 0.0 0.14 12.4 0.0 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|330834589|ref|YP_004409317.1| - 0.0015 17.9 5.3 0.17 11.2 0.0 2.7 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|330834589|ref|YP_004409317.1| - 0.0027 16.5 3.0 0.37 9.4 0.1 3.4 3 1 1 4 4 4 1 HI0933-like protein TrkA_N PF02254.18 gi|330834589|ref|YP_004409317.1| - 0.0033 17.7 0.2 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|330834589|ref|YP_004409317.1| - 0.004 17.2 0.1 0.015 15.2 0.0 1.9 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 gi|330834589|ref|YP_004409317.1| - 0.004 16.3 0.2 0.64 9.0 0.0 3.1 2 1 2 4 4 4 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|330834589|ref|YP_004409317.1| - 0.0091 15.3 0.1 0.059 12.6 0.0 2.1 2 0 0 2 2 2 1 FAD binding domain Big_3_3 PF13750.6 gi|330834589|ref|YP_004409317.1| - 0.014 15.1 0.1 0.024 14.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) 3HCDH_N PF02737.18 gi|330834589|ref|YP_004409317.1| - 0.023 14.6 0.2 0.069 13.0 0.0 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|330834589|ref|YP_004409317.1| - 0.042 12.9 0.1 6 5.8 0.1 2.2 2 0 0 2 2 2 0 FAD binding domain Trp_halogenase PF04820.14 gi|330834589|ref|YP_004409317.1| - 0.22 10.3 1.0 12 4.6 0.0 2.8 2 1 1 3 3 3 0 Tryptophan halogenase FAD_oxidored PF12831.7 gi|330834589|ref|YP_004409317.1| - 0.26 10.6 1.4 0.82 8.9 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase Radical_SAM PF04055.21 gi|330834590|ref|YP_004409318.1| - 3e-09 37.5 0.3 3e-09 37.5 0.3 1.8 2 1 0 2 2 2 1 Radical SAM superfamily zf-C2HC5 PF06221.13 gi|330834590|ref|YP_004409318.1| - 0.034 14.1 0.6 5.1 7.2 0.3 2.3 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type FAM193_C PF15914.5 gi|330834590|ref|YP_004409318.1| - 0.1 12.4 0.2 0.23 11.3 0.0 1.7 2 0 0 2 2 2 0 FAM193 family C-terminal Radical_SAM PF04055.21 gi|330834591|ref|YP_004409319.1| - 6.4e-11 42.9 0.0 9.6e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Polysacc_deac_3 PF15421.6 gi|330834591|ref|YP_004409319.1| - 0.2 10.1 0.0 0.28 9.6 0.0 1.2 1 0 0 1 1 1 0 Putative polysaccharide deacetylase BPL_LplA_LipB PF03099.19 gi|330834592|ref|YP_004409320.1| - 1.9e-06 27.8 0.0 2.9e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|330834593|ref|YP_004409321.1| - 0.073 13.1 0.1 0.082 12.9 0.1 1.3 1 1 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus EVE PF01878.18 gi|330834594|ref|YP_004409322.1| - 7.4e-19 68.2 0.1 8.6e-19 68.0 0.1 1.0 1 0 0 1 1 1 1 EVE domain DUF4960 PF16324.5 gi|330834594|ref|YP_004409322.1| - 0.061 12.9 0.7 0.079 12.5 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4960) DUF1286 PF06939.11 gi|330834595|ref|YP_004409323.1| - 1.1e-29 102.9 3.9 2e-29 102.1 3.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|330834595|ref|YP_004409323.1| - 0.0035 16.7 1.3 0.0042 16.4 0.7 1.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF3954 PF13128.6 gi|330834595|ref|YP_004409323.1| - 0.12 12.2 0.0 1 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3954) AA_permease_2 PF13520.6 gi|330834596|ref|YP_004409324.1| - 1.3e-22 80.2 58.5 2e-22 79.7 58.5 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330834596|ref|YP_004409324.1| - 7.6e-10 38.0 57.7 1.6e-09 36.9 57.7 1.4 1 1 0 1 1 1 1 Amino acid permease DUF1404 PF07185.11 gi|330834597|ref|YP_004409325.1| - 7.3e-45 152.7 15.0 8.2e-45 152.5 15.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.10 gi|330834597|ref|YP_004409325.1| - 2.4e-05 23.9 11.6 4.7e-05 23.0 11.6 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Na_H_Exchanger PF00999.21 gi|330834598|ref|YP_004409326.1| - 4.8e-48 163.8 54.1 5.7e-48 163.6 54.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF929 PF06053.11 gi|330834600|ref|YP_004409328.1| - 1.2e-80 270.4 8.7 1.4e-80 270.2 8.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) PsbT PF01405.17 gi|330834600|ref|YP_004409328.1| - 0.26 11.1 5.8 0.56 10.1 5.8 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre T protein PEPCK_GTP PF00821.18 gi|330834602|ref|YP_004409330.1| - 1.4e-100 336.6 0.0 1.7e-100 336.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain PEPCK_N PF17297.2 gi|330834602|ref|YP_004409330.1| - 2.7e-53 180.8 0.0 4e-53 180.3 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase N-terminal domain MORN PF02493.20 gi|330834602|ref|YP_004409330.1| - 0.2 11.6 1.5 0.61 10.1 1.5 1.9 1 0 0 1 1 1 0 MORN repeat Lactamase_B PF00753.27 gi|330834603|ref|YP_004409331.1| - 3.4e-20 72.9 0.2 4.3e-20 72.6 0.2 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330834603|ref|YP_004409331.1| - 4.6e-06 26.3 0.0 7.6e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|330834603|ref|YP_004409331.1| - 0.037 13.5 0.5 0.086 12.3 0.2 1.7 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily domain AA_permease_2 PF13520.6 gi|330834604|ref|YP_004409332.1| - 6.9e-37 127.3 52.5 6.9e-37 127.3 52.5 2.7 1 1 2 3 3 3 1 Amino acid permease AA_permease PF00324.21 gi|330834604|ref|YP_004409332.1| - 6.2e-31 107.5 41.2 6.2e-31 107.5 41.2 2.9 2 1 0 2 2 2 1 Amino acid permease Polysacc_synt_C PF14667.6 gi|330834604|ref|YP_004409332.1| - 0.014 15.4 11.6 0.014 15.4 11.6 5.5 4 1 2 6 6 6 0 Polysaccharide biosynthesis C-terminal domain HTH_17 PF12728.7 gi|330834604|ref|YP_004409332.1| - 0.058 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain AMP-binding PF00501.28 gi|330834605|ref|YP_004409333.1| - 2.3e-80 270.3 0.0 3.1e-80 269.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330834605|ref|YP_004409333.1| - 1.8e-25 89.7 1.1 1.8e-25 89.7 1.1 2.0 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330834605|ref|YP_004409333.1| - 1.1e-15 57.2 0.4 2.2e-15 56.3 0.4 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Molybdopterin PF00384.22 gi|330834606|ref|YP_004409334.1| - 6.6e-67 226.3 0.0 8.6e-67 226.0 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|330834606|ref|YP_004409334.1| - 5.2e-24 84.4 0.0 1.1e-23 83.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|330834606|ref|YP_004409334.1| - 0.0011 18.9 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Aldose_epim PF01263.20 gi|330834607|ref|YP_004409335.1| - 1.4e-31 109.9 0.0 2.2e-31 109.3 0.0 1.3 1 1 0 1 1 1 1 Aldose 1-epimerase Sigma70_r4 PF04545.16 gi|330834608|ref|YP_004409336.1| - 0.00011 21.6 0.1 0.00021 20.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|330834608|ref|YP_004409336.1| - 0.00034 20.5 0.0 0.00048 20.0 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|330834608|ref|YP_004409336.1| - 0.00052 19.8 0.0 0.00078 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.12 gi|330834608|ref|YP_004409336.1| - 0.00078 19.1 0.1 0.0012 18.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|330834608|ref|YP_004409336.1| - 0.00083 19.2 0.5 0.0013 18.6 0.5 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|330834608|ref|YP_004409336.1| - 0.002 18.0 0.1 0.0028 17.5 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB CvfB_WH PF17783.1 gi|330834608|ref|YP_004409336.1| - 0.0042 16.9 0.1 0.0074 16.1 0.1 1.4 1 0 0 1 1 1 1 CvfB-like winged helix domain HTH_24 PF13412.6 gi|330834608|ref|YP_004409336.1| - 0.0044 16.6 0.3 0.0044 16.6 0.3 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|330834608|ref|YP_004409336.1| - 0.0057 16.6 0.1 0.012 15.6 0.1 1.4 1 0 0 1 1 1 1 MarR family Crp PF00325.20 gi|330834608|ref|YP_004409336.1| - 0.0098 15.5 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_17 PF12728.7 gi|330834608|ref|YP_004409336.1| - 0.012 15.7 0.1 0.026 14.7 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|330834608|ref|YP_004409336.1| - 0.017 14.9 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|330834608|ref|YP_004409336.1| - 0.043 13.7 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|330834608|ref|YP_004409336.1| - 0.08 13.0 0.2 0.11 12.6 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|330834608|ref|YP_004409336.1| - 0.089 12.4 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix Sigma70_r3 PF04539.16 gi|330834608|ref|YP_004409336.1| - 0.11 12.6 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_36 PF13730.6 gi|330834608|ref|YP_004409336.1| - 0.12 12.3 0.2 0.23 11.5 0.2 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|330834608|ref|YP_004409336.1| - 0.15 11.9 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|330834608|ref|YP_004409336.1| - 0.18 11.3 0.0 0.24 10.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 tify PF06200.14 gi|330834609|ref|YP_004409337.1| - 0.071 12.5 0.1 0.22 10.9 0.1 1.9 1 0 0 1 1 1 0 tify domain Mitoc_L55 PF09776.9 gi|330834609|ref|YP_004409337.1| - 0.19 11.5 0.0 0.38 10.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein L55 Lyase_1 PF00206.20 gi|330834610|ref|YP_004409338.1| - 2.1e-84 283.6 0.0 2.5e-84 283.3 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|330834610|ref|YP_004409338.1| - 1.6e-10 41.3 0.0 3.7e-10 40.1 0.0 1.7 1 0 0 1 1 1 1 Fumarase C C-terminus HTH_23 PF13384.6 gi|330834610|ref|YP_004409338.1| - 0.075 12.9 0.0 0.22 11.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain FAD_binding_4 PF01565.23 gi|330834611|ref|YP_004409339.1| - 6e-11 42.2 0.0 1.2e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain PglD_N PF17836.1 gi|330834611|ref|YP_004409339.1| - 0.0062 17.1 0.0 0.013 16.1 0.0 1.5 1 0 0 1 1 1 1 PglD N-terminal domain ELFV_dehydrog PF00208.21 gi|330834611|ref|YP_004409339.1| - 0.19 11.4 0.0 0.29 10.8 0.0 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MazE_antitoxin PF04014.18 gi|330834612|ref|YP_004409340.1| - 4.1e-10 39.4 0.1 4.5e-10 39.2 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|330834612|ref|YP_004409340.1| - 0.00017 21.3 0.2 0.00024 20.8 0.2 1.4 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 PrlF_antitoxin PF15937.5 gi|330834612|ref|YP_004409340.1| - 0.0018 18.7 0.1 0.0018 18.7 0.1 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin UPF0270 PF06794.12 gi|330834612|ref|YP_004409340.1| - 0.003 17.6 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0270) DUF1905 PF08922.11 gi|330834612|ref|YP_004409340.1| - 0.12 12.5 0.1 0.18 11.9 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1905) Aconitase PF00330.20 gi|330834613|ref|YP_004409341.1| - 2.2e-166 554.5 0.0 2.9e-166 554.1 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|330834613|ref|YP_004409341.1| - 4.6e-34 117.6 0.0 1.1e-33 116.4 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain LUD_dom PF02589.15 gi|330834614|ref|YP_004409342.1| - 5.3e-45 153.5 0.1 1e-44 152.5 0.1 1.5 1 1 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|330834614|ref|YP_004409342.1| - 3.3e-11 43.5 1.0 6e-11 42.6 1.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834614|ref|YP_004409342.1| - 3.1e-07 30.4 1.1 0.012 15.7 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330834614|ref|YP_004409342.1| - 2.5e-06 27.9 2.4 9.3e-06 26.1 2.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330834614|ref|YP_004409342.1| - 3.3e-05 23.6 1.7 0.007 16.1 0.0 2.9 3 0 0 3 3 3 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_7 PF12838.7 gi|330834614|ref|YP_004409342.1| - 6.5e-05 23.4 2.9 0.00014 22.3 2.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834614|ref|YP_004409342.1| - 0.00045 20.3 4.4 0.029 14.5 6.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834614|ref|YP_004409342.1| - 0.00086 19.3 7.1 0.02 15.0 1.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330834614|ref|YP_004409342.1| - 0.0048 16.6 8.3 0.0077 16.0 1.9 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834614|ref|YP_004409342.1| - 0.0057 16.8 2.7 0.12 12.5 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330834614|ref|YP_004409342.1| - 0.0082 16.6 5.5 0.033 14.7 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330834614|ref|YP_004409342.1| - 0.018 15.9 3.2 0.95 10.5 0.7 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_22 PF17179.4 gi|330834614|ref|YP_004409342.1| - 0.1 13.5 4.0 0.62 10.9 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330834614|ref|YP_004409342.1| - 0.14 12.3 1.4 4.9 7.4 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330834614|ref|YP_004409342.1| - 0.28 11.4 7.5 0.4 10.9 1.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain CCG PF02754.16 gi|330834615|ref|YP_004409343.1| - 9.7e-08 32.1 0.0 5.6e-06 26.5 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain NicO PF03824.16 gi|330834616|ref|YP_004409344.1| - 0.0041 16.5 1.0 0.0041 16.5 1.0 2.5 3 0 0 3 3 3 1 High-affinity nickel-transport protein LysE PF01810.18 gi|330834616|ref|YP_004409344.1| - 0.019 14.4 1.0 0.019 14.4 1.0 2.2 3 0 0 3 3 3 0 LysE type translocator RNA_Me_trans PF04252.13 gi|330834617|ref|YP_004409345.1| - 5.9e-07 29.3 0.0 8.5e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase CoA_trans PF01144.23 gi|330834619|ref|YP_004409347.1| - 4.7e-29 101.3 0.0 5.4e-29 101.1 0.0 1.0 1 0 0 1 1 1 1 Coenzyme A transferase CoA_trans PF01144.23 gi|330834620|ref|YP_004409348.1| - 2.3e-23 82.8 0.1 2.7e-23 82.5 0.1 1.0 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|330834620|ref|YP_004409348.1| - 0.015 13.7 0.0 0.021 13.2 0.0 1.1 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter Methyltransf_11 PF08241.12 gi|330834621|ref|YP_004409349.1| - 0.00021 21.9 0.0 0.00048 20.7 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain CBS PF00571.28 gi|330834622|ref|YP_004409350.1| - 5.9e-21 74.7 1.9 6.2e-10 39.4 0.1 2.1 2 0 0 2 2 2 2 CBS domain DSBA PF01323.20 gi|330834623|ref|YP_004409351.1| - 3.3e-25 89.0 0.9 2.6e-14 53.4 0.2 2.1 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|330834623|ref|YP_004409351.1| - 1.5e-21 76.9 0.0 2.3e-21 76.3 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|330834623|ref|YP_004409351.1| - 6.2e-12 46.0 0.3 6.3e-09 36.2 0.3 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|330834623|ref|YP_004409351.1| - 2.8e-06 27.3 0.2 0.00022 21.2 0.1 2.4 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|330834623|ref|YP_004409351.1| - 1.8e-05 25.1 0.4 0.00054 20.4 0.4 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Calici_PP_N PF08405.11 gi|330834623|ref|YP_004409351.1| - 0.053 12.3 0.0 0.085 11.7 0.0 1.3 1 0 0 1 1 1 0 Viral polyprotein N-terminal DUF4523 PF15023.6 gi|330834623|ref|YP_004409351.1| - 0.077 12.8 0.0 4.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4523) Vip3A_N PF12495.8 gi|330834624|ref|YP_004409352.1| - 0.0013 18.7 0.8 0.0021 18.0 0.7 1.4 1 1 0 1 1 1 1 Vegetative insecticide protein 3A N terminal ER PF01133.17 gi|330834624|ref|YP_004409352.1| - 0.075 13.1 1.3 0.25 11.4 0.9 1.8 2 0 0 2 2 2 0 Enhancer of rudimentary MCM6_C PF18263.1 gi|330834624|ref|YP_004409352.1| - 0.082 13.1 3.2 0.094 13.0 3.2 1.3 1 1 0 1 1 1 0 MCM6 C-terminal winged-helix domain OsmC PF02566.19 gi|330834625|ref|YP_004409353.1| - 2e-15 57.1 0.0 2.7e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF5634_N PF18672.1 gi|330834625|ref|YP_004409353.1| - 0.094 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5634) GnsAB_toxin PF08178.11 gi|330834626|ref|YP_004409354.1| - 0.048 13.6 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 GnsA/GnsB toxin of bacterial toxin-antitoxin system CBS PF00571.28 gi|330834627|ref|YP_004409355.1| - 1.4e-39 134.3 18.8 1.7e-12 47.6 1.2 4.0 4 0 0 4 4 4 4 CBS domain Lip_prot_lig_C PF10437.9 gi|330834628|ref|YP_004409356.1| - 0.0077 16.2 0.0 0.021 14.8 0.0 1.8 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|330834628|ref|YP_004409356.1| - 0.014 15.3 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family KMP11 PF03037.16 gi|330834628|ref|YP_004409356.1| - 2.2 9.1 5.2 23 5.9 1.4 3.3 2 1 0 3 3 3 0 Kinetoplastid membrane protein 11 GCV_H PF01597.19 gi|330834629|ref|YP_004409357.1| - 2.8e-42 143.5 1.3 3.6e-42 143.1 1.3 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|330834629|ref|YP_004409357.1| - 3.6e-06 26.7 4.6 6.3e-06 25.9 4.6 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|330834629|ref|YP_004409357.1| - 2.7e-05 24.0 0.4 4.8e-05 23.2 0.4 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|330834629|ref|YP_004409357.1| - 0.0015 17.8 0.1 0.0042 16.3 0.1 1.8 3 0 0 3 3 3 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion Peptidase_M23 PF01551.22 gi|330834629|ref|YP_004409357.1| - 0.015 15.5 1.3 1.1 9.5 0.3 2.2 1 1 1 2 2 2 0 Peptidase family M23 DUF123 PF01986.16 gi|330834630|ref|YP_004409358.1| - 6.3e-16 58.7 0.2 8.3e-16 58.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.24 gi|330834630|ref|YP_004409358.1| - 0.051 13.8 0.0 0.071 13.4 0.0 1.4 1 0 0 1 1 1 0 GIY-YIG catalytic domain Peptidase_M20 PF01546.28 gi|330834631|ref|YP_004409359.1| - 6.3e-30 104.4 0.0 9.4e-30 103.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|330834631|ref|YP_004409359.1| - 3.8e-19 68.6 0.0 6.5e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Det1 PF09737.9 gi|330834632|ref|YP_004409360.1| - 0.062 12.4 0.2 0.078 12.0 0.2 1.3 1 1 0 1 1 1 0 De-etiolated protein 1 Det1 Cbl_N PF02262.16 gi|330834632|ref|YP_004409360.1| - 0.1 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 CBL proto-oncogene N-terminal domain 1 7TM_GPCR_Srw PF10324.9 gi|330834633|ref|YP_004409361.1| - 0.044 13.1 0.5 0.048 12.9 0.5 1.2 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srw Comm PF15957.5 gi|330834633|ref|YP_004409361.1| - 0.058 13.7 3.3 0.12 12.7 3.3 1.6 1 1 0 1 1 1 0 Commissureless DUF1600 PF07667.11 gi|330834633|ref|YP_004409361.1| - 0.064 13.5 3.5 0.081 13.1 3.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1600) RseC_MucC PF04246.12 gi|330834633|ref|YP_004409361.1| - 0.15 12.0 1.0 0.16 11.9 1.0 1.0 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF2207 PF09972.9 gi|330834633|ref|YP_004409361.1| - 0.34 9.6 2.9 0.37 9.5 2.9 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) LSR PF05624.14 gi|330834633|ref|YP_004409361.1| - 0.94 9.5 3.8 0.46 10.5 0.3 1.9 2 0 0 2 2 2 0 Lipolysis stimulated receptor (LSR) PriX PF18689.1 gi|330834634|ref|YP_004409362.1| - 5.6e-40 135.7 0.2 8.1e-40 135.2 0.2 1.2 1 0 0 1 1 1 1 Primase X ATP_bind_3 PF01171.20 gi|330834635|ref|YP_004409363.1| - 3.2e-14 53.1 0.0 1e-13 51.5 0.0 1.7 1 1 0 1 1 1 1 PP-loop family HTH_39 PF14090.6 gi|330834635|ref|YP_004409363.1| - 0.013 15.3 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YflT PF11181.8 gi|330834635|ref|YP_004409363.1| - 0.08 13.5 0.0 0.15 12.6 0.0 1.4 1 0 0 1 1 1 0 Heat induced stress protein YflT Nudix_N_2 PF14803.6 gi|330834635|ref|YP_004409363.1| - 0.087 12.8 8.9 2.8 7.9 0.1 3.9 3 1 0 3 3 3 0 Nudix N-terminal zinc_ribbon_15 PF17032.5 gi|330834635|ref|YP_004409363.1| - 0.087 13.6 4.8 1 10.1 0.2 3.1 3 0 0 3 3 3 0 zinc-ribbon family zf-RRN7 PF11781.8 gi|330834635|ref|YP_004409363.1| - 0.099 12.4 1.1 3.6 7.4 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|330834635|ref|YP_004409363.1| - 0.49 10.5 9.5 1.2 9.2 0.8 3.2 3 0 0 3 3 3 0 Double zinc ribbon zf-dskA_traR PF01258.17 gi|330834635|ref|YP_004409363.1| - 3 7.9 6.5 12 5.9 0.0 3.7 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.12 gi|330834635|ref|YP_004409363.1| - 9.1 5.9 12.7 21 4.7 1.5 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding MtaB PF12176.8 gi|330834636|ref|YP_004409364.1| - 0.022 13.5 0.0 0.029 13.2 0.0 1.1 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit FHA PF00498.26 gi|330834637|ref|YP_004409365.1| - 2.1e-15 56.8 0.0 4.7e-15 55.7 0.0 1.6 2 0 0 2 2 2 1 FHA domain Yop-YscD_cpl PF16697.5 gi|330834637|ref|YP_004409365.1| - 7.5e-10 39.0 0.0 1.6e-09 38.0 0.0 1.5 1 0 0 1 1 1 1 Inner membrane component of T3SS, cytoplasmic domain zinc_ribbon_2 PF13240.6 gi|330834637|ref|YP_004409365.1| - 2.3e-05 23.9 2.8 4.7e-05 23.0 2.8 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|330834637|ref|YP_004409365.1| - 0.0013 18.0 1.6 0.0023 17.3 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|330834637|ref|YP_004409365.1| - 0.0044 17.0 0.8 0.0076 16.3 0.8 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|330834637|ref|YP_004409365.1| - 0.067 12.5 1.1 0.11 11.8 1.1 1.4 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Presenilin PF01080.17 gi|330834637|ref|YP_004409365.1| - 0.19 10.5 1.0 0.16 10.7 1.0 1.1 1 0 0 1 1 1 0 Presenilin Hid1 PF12722.7 gi|330834637|ref|YP_004409365.1| - 0.56 8.3 5.1 0.72 7.9 5.1 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein zf-tcix PF14952.6 gi|330834637|ref|YP_004409365.1| - 0.97 9.1 2.9 2.4 7.8 2.9 1.6 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Zn_ribbon_SprT PF17283.2 gi|330834637|ref|YP_004409365.1| - 8.6 6.4 6.6 2.2 8.3 0.4 2.4 3 0 0 3 3 3 0 SprT-like zinc ribbon domain Metallophos PF00149.28 gi|330834638|ref|YP_004409366.1| - 1.2e-28 101.1 0.7 1.4e-28 100.8 0.7 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|330834638|ref|YP_004409366.1| - 8.8e-07 29.3 0.0 1.3e-06 28.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain ArnB_C PF18677.1 gi|330834639|ref|YP_004409367.1| - 2.5e-29 101.2 13.6 6e-29 100.0 12.4 2.3 2 1 0 2 2 2 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|330834639|ref|YP_004409367.1| - 7.3e-19 68.7 0.0 1.9e-18 67.3 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|330834639|ref|YP_004409367.1| - 2.3e-15 57.1 0.0 2.1e-14 54.1 0.0 2.4 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|330834639|ref|YP_004409367.1| - 1.2e-10 41.5 0.1 8.7e-10 38.7 0.0 2.0 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|330834639|ref|YP_004409367.1| - 4.9e-08 32.6 0.1 1.2e-07 31.4 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|330834639|ref|YP_004409367.1| - 0.00055 20.1 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 VWA-like domain (DUF2201) vWA-TerF-like PF10138.9 gi|330834639|ref|YP_004409367.1| - 0.047 13.8 0.2 0.21 11.7 0.0 2.1 2 1 0 2 2 2 0 vWA found in TerF C terminus DUF4518 PF15008.6 gi|330834639|ref|YP_004409367.1| - 0.42 9.7 2.8 0.7 9.0 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4518) DEAD PF00270.29 gi|330834640|ref|YP_004409368.1| - 9.4e-41 139.5 0.0 5.2e-39 133.8 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330834640|ref|YP_004409368.1| - 2e-29 102.1 0.1 5.5e-28 97.5 0.1 2.3 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330834640|ref|YP_004409368.1| - 1.9e-07 31.2 0.0 9.9e-07 28.9 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|330834640|ref|YP_004409368.1| - 0.0015 17.9 0.7 0.0082 15.5 0.7 2.0 1 1 0 1 1 1 1 SecA DEAD-like domain AAA_22 PF13401.6 gi|330834640|ref|YP_004409368.1| - 0.0094 16.2 0.1 0.035 14.4 0.0 2.0 2 1 0 2 2 2 1 AAA domain CMS1 PF14617.6 gi|330834640|ref|YP_004409368.1| - 0.019 14.3 0.1 0.082 12.2 0.0 2.0 3 0 0 3 3 3 0 U3-containing 90S pre-ribosomal complex subunit Flavi_DEAD PF07652.14 gi|330834640|ref|YP_004409368.1| - 0.088 12.8 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 Flavivirus DEAD domain T4SS-DNA_transf PF02534.14 gi|330834640|ref|YP_004409368.1| - 0.092 11.5 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer YrhC PF14143.6 gi|330834641|ref|YP_004409369.1| - 0.0039 17.3 0.8 0.0059 16.7 0.8 1.3 1 0 0 1 1 1 1 YrhC-like protein SSF PF00474.17 gi|330834642|ref|YP_004409370.1| - 3.8e-12 45.8 31.7 6.3e-12 45.1 31.7 1.4 1 0 0 1 1 1 1 Sodium:solute symporter family TIM PF00121.18 gi|330834644|ref|YP_004409372.1| - 6.3e-14 51.9 0.0 1.3e-13 50.8 0.0 1.5 2 0 0 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|330834644|ref|YP_004409372.1| - 5.4e-06 25.9 0.4 9.7e-06 25.1 0.4 1.4 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|330834644|ref|YP_004409372.1| - 0.00019 20.7 0.2 0.0049 16.1 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF561) Glu_synthase PF01645.17 gi|330834644|ref|YP_004409372.1| - 0.0029 16.8 0.2 0.0053 16.0 0.2 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase NMO PF03060.15 gi|330834644|ref|YP_004409372.1| - 0.0083 15.5 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase DUF1729 PF08354.10 gi|330834644|ref|YP_004409372.1| - 0.01 14.7 0.3 0.022 13.7 0.1 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF1729) FMN_dh PF01070.18 gi|330834644|ref|YP_004409372.1| - 0.013 14.5 0.3 0.022 13.8 0.3 1.3 1 0 0 1 1 1 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|330834644|ref|YP_004409372.1| - 0.029 13.8 1.5 0.074 12.5 0.2 2.2 3 1 0 3 3 3 0 Histidine biosynthesis protein IGPS PF00218.21 gi|330834644|ref|YP_004409372.1| - 0.079 12.1 0.0 0.13 11.4 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase HTH_1 PF00126.27 gi|330834645|ref|YP_004409373.1| - 9.2e-07 28.7 0.0 2.5e-06 27.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family LZ_Tnp_IS481 PF13011.6 gi|330834645|ref|YP_004409373.1| - 0.031 14.8 0.1 0.087 13.4 0.0 1.6 1 1 1 2 2 2 0 leucine-zipper of insertion element IS481 ATP-grasp PF02222.22 gi|330834646|ref|YP_004409374.1| - 1.5e-42 145.1 0.0 3.4e-42 143.9 0.0 1.5 2 0 0 2 2 2 1 ATP-grasp domain PurK_C PF17769.1 gi|330834646|ref|YP_004409374.1| - 3.2e-13 49.1 0.1 7.1e-13 48.0 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|330834646|ref|YP_004409374.1| - 0.00012 22.2 0.0 0.00023 21.3 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain AIRC PF00731.20 gi|330834647|ref|YP_004409375.1| - 3.9e-66 221.2 0.1 4.4e-66 221.0 0.1 1.0 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.11 gi|330834647|ref|YP_004409375.1| - 0.0099 15.5 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Propionate catabolism activator DUF2334 PF10096.9 gi|330834647|ref|YP_004409375.1| - 0.027 14.1 0.0 0.043 13.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) DUF1541 PF07563.11 gi|330834647|ref|YP_004409375.1| - 0.035 14.0 0.8 0.26 11.2 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1541) Fe-ADH_2 PF13685.6 gi|330834647|ref|YP_004409375.1| - 0.079 12.6 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Iron-containing alcohol dehydrogenase AA_permease PF00324.21 gi|330834648|ref|YP_004409376.1| - 4.2e-08 32.2 44.7 5.9e-07 28.4 44.7 2.3 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|330834648|ref|YP_004409376.1| - 6.3e-07 28.6 51.3 7.8e-07 28.3 51.3 1.1 1 0 0 1 1 1 1 Amino acid permease SKG6 PF08693.10 gi|330834648|ref|YP_004409376.1| - 5.8 6.4 8.7 0.19 11.2 1.7 2.3 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Esterase PF00756.20 gi|330834649|ref|YP_004409377.1| - 1.8e-12 47.4 0.0 3.2e-12 46.6 0.0 1.3 1 0 0 1 1 1 1 Putative esterase Hydrolase_4 PF12146.8 gi|330834649|ref|YP_004409377.1| - 0.0031 16.8 0.0 0.0049 16.2 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DUF4247 PF14042.6 gi|330834652|ref|YP_004409380.1| - 0.17 12.6 0.0 0.19 12.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4247) Methyltransf_11 PF08241.12 gi|330834653|ref|YP_004409381.1| - 2.8e-16 59.9 0.0 3.5e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330834653|ref|YP_004409381.1| - 8.8e-13 48.8 0.0 1.1e-12 48.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330834653|ref|YP_004409381.1| - 2.3e-12 46.9 0.0 2.7e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330834653|ref|YP_004409381.1| - 2e-08 34.0 0.0 2.6e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|330834653|ref|YP_004409381.1| - 8.5e-08 32.9 0.0 1.1e-07 32.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330834653|ref|YP_004409381.1| - 1.1e-07 31.8 0.0 1.3e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330834653|ref|YP_004409381.1| - 5.5e-05 22.7 0.0 7e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_8 PF05148.15 gi|330834653|ref|YP_004409381.1| - 7e-05 22.8 0.0 0.00019 21.3 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_32 PF13679.6 gi|330834653|ref|YP_004409381.1| - 0.00087 19.3 0.0 0.00098 19.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330834653|ref|YP_004409381.1| - 0.00093 18.6 0.0 0.0012 18.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|330834653|ref|YP_004409381.1| - 0.001 18.8 0.0 0.0013 18.4 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_18 PF12847.7 gi|330834653|ref|YP_004409381.1| - 0.0079 16.1 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|330834653|ref|YP_004409381.1| - 0.092 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein AviRa PF11599.8 gi|330834653|ref|YP_004409381.1| - 0.094 12.2 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|330834653|ref|YP_004409381.1| - 0.17 11.5 0.0 0.36 10.4 0.0 1.5 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase DNA_pol_B PF00136.21 gi|330834655|ref|YP_004409383.1| - 2e-14 53.2 0.0 4e-11 42.3 0.0 3.1 2 1 0 2 2 2 2 DNA polymerase family B GA-like PF17573.2 gi|330834655|ref|YP_004409383.1| - 0.22 11.5 0.7 0.6 10.1 0.1 2.0 2 0 0 2 2 2 0 GA-like domain Exo_endo_phos PF03372.23 gi|330834656|ref|YP_004409384.1| - 1.1e-19 70.9 0.0 1.3e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|330834656|ref|YP_004409384.1| - 2.7e-06 27.2 0.0 1.5e-05 24.8 0.0 2.1 2 1 0 2 2 2 1 Endonuclease-reverse transcriptase Hemerythrin PF01814.23 gi|330834657|ref|YP_004409385.1| - 4.1e-07 30.7 1.2 5.3e-07 30.3 1.2 1.2 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain Imm12 PF15560.6 gi|330834657|ref|YP_004409385.1| - 0.13 12.2 0.2 0.43 10.5 0.0 1.8 2 0 0 2 2 2 0 Immunity protein 12 HemY_N PF07219.13 gi|330834657|ref|YP_004409385.1| - 0.16 12.1 0.0 0.41 10.9 0.0 1.6 2 0 0 2 2 2 0 HemY protein N-terminus Fer4 PF00037.27 gi|330834658|ref|YP_004409386.1| - 1.6e-13 49.8 15.6 1.7e-07 30.7 6.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330834658|ref|YP_004409386.1| - 2.4e-09 37.2 19.9 2.3e-07 30.8 8.8 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330834658|ref|YP_004409386.1| - 5.3e-09 36.5 15.2 2.2e-07 31.3 9.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834658|ref|YP_004409386.1| - 7.5e-09 35.6 6.1 1e-08 35.2 6.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834658|ref|YP_004409386.1| - 3.1e-07 30.2 15.0 0.00017 21.5 6.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834658|ref|YP_004409386.1| - 3.5e-07 30.3 7.1 4.9e-07 29.8 7.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330834658|ref|YP_004409386.1| - 3.5e-05 23.6 11.4 0.029 14.5 4.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330834658|ref|YP_004409386.1| - 3.9e-05 24.5 8.6 0.0081 17.1 3.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|330834658|ref|YP_004409386.1| - 0.00014 22.3 10.6 0.07 13.7 0.5 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_8 PF13183.6 gi|330834658|ref|YP_004409386.1| - 0.00041 20.7 8.4 0.01 16.3 8.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330834658|ref|YP_004409386.1| - 0.00094 20.0 15.1 0.012 16.5 6.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330834658|ref|YP_004409386.1| - 0.00095 19.5 9.1 0.032 14.7 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|330834658|ref|YP_004409386.1| - 0.0021 18.1 0.9 0.0023 18.0 0.9 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|330834658|ref|YP_004409386.1| - 0.0046 17.1 9.6 0.014 15.6 2.8 2.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain DUF2761 PF10959.8 gi|330834658|ref|YP_004409386.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Fer4_17 PF13534.6 gi|330834658|ref|YP_004409386.1| - 0.014 15.9 7.2 0.8 10.3 2.4 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330834658|ref|YP_004409386.1| - 0.051 14.3 11.6 0.71 10.7 0.4 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|330834658|ref|YP_004409386.1| - 0.14 13.0 4.2 3.6 8.5 0.6 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain MarR_2 PF12802.7 gi|330834659|ref|YP_004409387.1| - 0.00019 21.2 0.0 0.00023 21.0 0.0 1.1 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330834659|ref|YP_004409387.1| - 0.00075 19.3 0.0 0.0009 19.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|330834659|ref|YP_004409387.1| - 0.0012 18.7 0.2 0.0012 18.7 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|330834659|ref|YP_004409387.1| - 0.0019 18.0 0.0 0.0026 17.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|330834659|ref|YP_004409387.1| - 0.0029 17.5 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 MarR family DUF2250 PF10007.9 gi|330834659|ref|YP_004409387.1| - 0.0039 17.3 0.0 0.0052 16.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|330834659|ref|YP_004409387.1| - 0.014 15.5 0.1 0.021 14.9 0.0 1.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330834659|ref|YP_004409387.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|330834659|ref|YP_004409387.1| - 0.02 15.4 0.0 0.027 14.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|330834659|ref|YP_004409387.1| - 0.037 14.1 0.1 0.05 13.7 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation Sulfolobus_pRN PF05584.11 gi|330834659|ref|YP_004409387.1| - 0.047 13.7 0.1 0.058 13.5 0.1 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HIP1_clath_bdg PF16515.5 gi|330834663|ref|YP_004409391.1| - 0.021 15.4 3.7 0.022 15.4 3.7 1.1 1 0 0 1 1 1 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TMF_TATA_bd PF12325.8 gi|330834663|ref|YP_004409391.1| - 0.028 14.6 5.9 0.03 14.6 5.9 1.0 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding Bap31_Bap29_C PF18035.1 gi|330834663|ref|YP_004409391.1| - 0.1 12.6 5.7 0.14 12.2 5.7 1.2 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain DUF4140 PF13600.6 gi|330834663|ref|YP_004409391.1| - 0.17 12.3 3.1 0.18 12.2 3.1 1.0 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Toxin_GhoT_OrtT PF10753.9 gi|330834664|ref|YP_004409392.1| - 0.22 11.8 8.6 0.089 13.0 2.5 2.8 2 1 1 3 3 3 0 Toxin GhoT_OrtT NADHdh PF00146.21 gi|330834665|ref|YP_004409393.1| - 7.8e-33 114.1 20.9 1e-32 113.7 20.9 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Proton_antipo_M PF00361.20 gi|330834666|ref|YP_004409394.1| - 6e-15 55.2 27.2 6e-15 55.2 27.2 3.1 3 0 0 3 3 3 2 Proton-conducting membrane transporter YSIRK_signal PF04650.17 gi|330834666|ref|YP_004409394.1| - 1.8 8.5 5.0 2.8 7.9 0.1 2.8 2 0 0 2 2 2 0 YSIRK type signal peptide Oxidored_q6 PF01058.22 gi|330834667|ref|YP_004409395.1| - 2.1e-19 69.7 0.1 7.4e-19 67.9 0.1 1.8 1 1 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Fer4 PF00037.27 gi|330834667|ref|YP_004409395.1| - 0.00078 19.2 8.4 0.088 12.7 0.7 3.5 3 0 0 3 3 3 3 4Fe-4S binding domain Complex1_49kDa PF00346.19 gi|330834668|ref|YP_004409396.1| - 2.7e-21 75.9 0.0 3.6e-16 59.1 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Proton_antipo_M PF00361.20 gi|330834669|ref|YP_004409397.1| - 2e-44 152.0 24.2 2e-44 152.0 24.2 2.0 2 1 0 2 2 2 1 Proton-conducting membrane transporter Phtf-FEM1B_bdg PF12129.8 gi|330834669|ref|YP_004409397.1| - 0.85 9.4 5.8 2.4 8.0 5.8 1.7 1 0 0 1 1 1 0 Male germ-cell putative homeodomain transcription factor ADH_N PF08240.12 gi|330834670|ref|YP_004409398.1| - 1.4e-26 92.5 0.0 2.8e-26 91.5 0.0 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330834670|ref|YP_004409398.1| - 2.8e-19 69.4 0.2 4.3e-19 68.8 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330834670|ref|YP_004409398.1| - 4.2e-13 50.5 0.0 7.1e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase LDcluster4 PF18306.1 gi|330834670|ref|YP_004409398.1| - 0.00089 18.9 0.7 0.0021 17.6 0.3 1.8 2 0 0 2 2 2 1 SLOG cluster4 family AlaDh_PNT_C PF01262.21 gi|330834670|ref|YP_004409398.1| - 0.0019 17.5 0.6 0.0036 16.6 0.6 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain CMAS PF02353.20 gi|330834670|ref|YP_004409398.1| - 0.023 14.0 0.1 0.034 13.4 0.1 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase adh_short PF00106.25 gi|330834670|ref|YP_004409398.1| - 0.024 14.1 2.0 0.051 13.0 1.7 1.8 1 1 1 2 2 2 0 short chain dehydrogenase Epimerase PF01370.21 gi|330834670|ref|YP_004409398.1| - 0.064 12.7 0.1 0.097 12.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ELFV_dehydrog PF00208.21 gi|330834670|ref|YP_004409398.1| - 0.082 12.6 0.4 0.13 12.0 0.4 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330834670|ref|YP_004409398.1| - 0.087 12.2 0.2 0.17 11.3 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E1-N PF14463.6 gi|330834670|ref|YP_004409398.1| - 0.098 12.5 0.3 0.31 10.8 0.2 1.9 1 1 0 1 1 1 0 E1 N-terminal domain Eno-Rase_NADH_b PF12242.8 gi|330834670|ref|YP_004409398.1| - 0.16 11.7 2.3 0.13 12.1 0.7 1.7 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CBS PF00571.28 gi|330834671|ref|YP_004409399.1| - 2.7e-28 98.2 2.0 1.4e-13 51.0 0.4 2.1 2 0 0 2 2 2 2 CBS domain ADH_N PF08240.12 gi|330834672|ref|YP_004409400.1| - 5.4e-31 106.7 0.8 5.4e-31 106.7 0.8 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330834672|ref|YP_004409400.1| - 3.6e-30 104.6 0.1 5.9e-30 103.9 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330834672|ref|YP_004409400.1| - 1.2e-08 36.1 0.0 4.5e-08 34.2 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|330834672|ref|YP_004409400.1| - 7.9e-08 32.0 0.5 1.9e-07 30.8 0.5 1.7 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus NAD_binding_3 PF03447.16 gi|330834672|ref|YP_004409400.1| - 0.049 14.3 0.2 0.089 13.5 0.2 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|330834672|ref|YP_004409400.1| - 0.091 13.0 0.2 0.18 12.1 0.2 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|330834672|ref|YP_004409400.1| - 0.094 12.1 0.2 0.16 11.3 0.2 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NADH_4Fe-4S PF10589.9 gi|330834672|ref|YP_004409400.1| - 0.14 12.3 0.5 0.3 11.2 0.5 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 3HCDH_N PF02737.18 gi|330834673|ref|YP_004409401.1| - 1.3e-58 197.9 0.2 2.1e-58 197.2 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|330834673|ref|YP_004409401.1| - 7.3e-41 138.7 0.0 3.5e-27 94.8 0.0 2.8 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMP-binding_C_2 PF14535.6 gi|330834674|ref|YP_004409402.1| - 1.4e-13 51.0 0.0 2.4e-13 50.2 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|330834674|ref|YP_004409402.1| - 0.00041 19.0 0.2 0.00081 18.1 0.2 1.4 1 1 0 1 1 1 1 AMP-binding enzyme GDE_C PF06202.14 gi|330834675|ref|YP_004409403.1| - 3.9e-111 371.7 0.0 5e-111 371.3 0.0 1.1 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|330834675|ref|YP_004409403.1| - 4.2e-50 170.2 0.4 7.1e-50 169.4 0.4 1.3 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal Bac_rhamnosid6H PF17389.2 gi|330834675|ref|YP_004409403.1| - 5.6e-05 22.5 0.0 8.3e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF608 PF04685.13 gi|330834675|ref|YP_004409403.1| - 0.00097 18.4 0.1 0.0016 17.7 0.1 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydro_63 PF03200.16 gi|330834675|ref|YP_004409403.1| - 0.043 12.6 0.2 0.59 8.8 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 63 C-terminal domain Glyco_hydro_15 PF00723.21 gi|330834676|ref|YP_004409404.1| - 3.1e-15 55.9 0.1 1e-09 37.7 0.1 3.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 NTP_transferase PF00483.23 gi|330834677|ref|YP_004409405.1| - 1e-38 133.4 0.0 1.3e-38 133.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|330834677|ref|YP_004409405.1| - 3.2e-09 36.1 19.8 0.0053 16.5 1.3 5.2 2 2 3 5 5 5 5 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|330834677|ref|YP_004409405.1| - 9.1e-09 34.0 5.8 1.4e-08 33.4 5.8 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|330834677|ref|YP_004409405.1| - 0.01 14.8 1.0 0.053 12.5 1.0 2.0 1 1 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.6 gi|330834677|ref|YP_004409405.1| - 0.069 12.9 6.9 0.18 11.6 0.5 3.4 3 0 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|330834677|ref|YP_004409405.1| - 0.14 12.5 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 MobA-like NTP transferase domain Glyco_hydro_57 PF03065.15 gi|330834678|ref|YP_004409406.1| - 2.6e-70 237.2 0.7 4.9e-70 236.3 0.7 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|330834678|ref|YP_004409406.1| - 0.0038 17.1 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Glycos_transf_1 PF00534.20 gi|330834679|ref|YP_004409407.1| - 1.6e-28 99.4 0.0 2.7e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|330834679|ref|YP_004409407.1| - 1.5e-26 93.6 0.0 2.3e-26 93.0 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.6 gi|330834679|ref|YP_004409407.1| - 8.6e-22 78.0 0.0 1.8e-21 77.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330834679|ref|YP_004409407.1| - 4.9e-10 39.7 0.3 2.4e-06 27.7 0.1 2.7 2 1 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330834679|ref|YP_004409407.1| - 8.4e-07 29.6 0.0 2.1e-06 28.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|330834679|ref|YP_004409407.1| - 0.0011 19.3 0.0 0.0098 16.3 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 ThiS PF02597.20 gi|330834680|ref|YP_004409408.1| - 1.9e-10 41.2 0.3 2.2e-10 41.0 0.3 1.0 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|330834680|ref|YP_004409408.1| - 6.7e-06 26.1 0.1 9.3e-06 25.6 0.1 1.2 1 0 0 1 1 1 1 ThiS-like ubiquitin TGS PF02824.21 gi|330834680|ref|YP_004409408.1| - 5.8e-05 23.1 0.1 7.2e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 TGS domain Ub-Mut7C PF14451.6 gi|330834680|ref|YP_004409408.1| - 0.01 15.7 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 Mut7-C ubiquitin TrkA_C PF02080.21 gi|330834680|ref|YP_004409408.1| - 0.03 14.2 0.1 0.041 13.7 0.1 1.3 1 0 0 1 1 1 0 TrkA-C domain DAO PF01266.24 gi|330834682|ref|YP_004409410.1| - 5.4e-43 147.9 0.0 6.7e-43 147.6 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330834682|ref|YP_004409410.1| - 5.1e-06 26.0 0.0 6.2e-06 25.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|330834682|ref|YP_004409410.1| - 7e-06 26.2 0.1 1.5e-05 25.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|330834682|ref|YP_004409410.1| - 0.00033 20.0 0.4 0.0023 17.2 0.4 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|330834682|ref|YP_004409410.1| - 0.0012 18.7 0.0 0.0022 17.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|330834682|ref|YP_004409410.1| - 0.0015 17.3 0.3 0.02 13.6 0.1 2.4 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|330834682|ref|YP_004409410.1| - 0.0018 17.4 0.2 0.0028 16.8 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|330834682|ref|YP_004409410.1| - 0.0025 17.1 0.1 0.0045 16.3 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|330834682|ref|YP_004409410.1| - 0.0052 16.4 0.0 0.0086 15.7 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|330834682|ref|YP_004409410.1| - 0.0095 16.5 3.0 0.073 13.6 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|330834682|ref|YP_004409410.1| - 0.018 14.7 0.3 0.037 13.7 0.3 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|330834682|ref|YP_004409410.1| - 0.03 13.4 0.1 0.055 12.5 0.1 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|330834682|ref|YP_004409410.1| - 0.053 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|330834682|ref|YP_004409410.1| - 0.09 12.0 0.1 0.19 10.9 0.1 1.5 1 0 0 1 1 1 0 Thi4 family FAD_oxidored PF12831.7 gi|330834682|ref|YP_004409410.1| - 0.1 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase DUF1955 PF09205.10 gi|330834683|ref|YP_004409411.1| - 7.2e-66 220.8 8.5 8.1e-66 220.7 8.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) DUF4523 PF15023.6 gi|330834683|ref|YP_004409411.1| - 0.032 14.0 0.0 0.061 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) TPR_8 PF13181.6 gi|330834683|ref|YP_004409411.1| - 0.043 14.0 0.2 0.1 12.8 0.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat PK PF00224.21 gi|330834684|ref|YP_004409412.1| - 7.3e-80 268.5 0.1 1e-79 268.0 0.1 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|330834684|ref|YP_004409412.1| - 2.5e-19 69.6 0.0 5.3e-19 68.6 0.0 1.6 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain Acetyltransf_1 PF00583.25 gi|330834685|ref|YP_004409413.1| - 1.7e-15 57.3 0.0 2.4e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330834685|ref|YP_004409413.1| - 1.5e-11 44.3 0.0 2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330834685|ref|YP_004409413.1| - 2.5e-08 34.7 0.0 3.3e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|330834685|ref|YP_004409413.1| - 1.1e-07 32.2 0.0 2.6e-07 31.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330834685|ref|YP_004409413.1| - 6.8e-06 26.0 0.0 1.2e-05 25.2 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Big_6 PF17936.1 gi|330834685|ref|YP_004409413.1| - 0.00085 19.5 0.0 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial Ig domain Acetyltransf_9 PF13527.7 gi|330834685|ref|YP_004409413.1| - 0.0035 17.4 0.0 0.99 9.5 0.0 2.4 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330834685|ref|YP_004409413.1| - 0.0098 16.0 0.0 0.014 15.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Lactamase_B_6 PF16661.5 gi|330834685|ref|YP_004409413.1| - 0.021 14.2 0.0 0.035 13.6 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Acetyltransf_8 PF13523.6 gi|330834685|ref|YP_004409413.1| - 0.074 12.7 0.0 1.4 8.6 0.0 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|330834685|ref|YP_004409413.1| - 0.078 13.1 0.0 0.12 12.5 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|330834685|ref|YP_004409413.1| - 0.12 12.5 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase HTH_3 PF01381.22 gi|330834686|ref|YP_004409414.1| - 0.00013 21.9 0.0 0.00029 20.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|330834686|ref|YP_004409414.1| - 0.0025 17.7 0.0 0.0041 17.1 0.0 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|330834686|ref|YP_004409414.1| - 0.0091 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT UPF0175 PF03683.13 gi|330834686|ref|YP_004409414.1| - 0.014 15.1 0.1 0.031 14.0 0.0 1.7 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_8 PF02954.19 gi|330834686|ref|YP_004409414.1| - 0.017 14.9 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_1 PF00126.27 gi|330834686|ref|YP_004409414.1| - 0.078 12.9 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_31 PF13560.6 gi|330834686|ref|YP_004409414.1| - 0.087 13.2 0.0 0.088 13.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|330834686|ref|YP_004409414.1| - 0.1 12.1 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|330834686|ref|YP_004409414.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF4024 PF13216.6 gi|330834688|ref|YP_004409416.1| - 0.17 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) Creatininase PF02633.14 gi|330834690|ref|YP_004409418.1| - 3.9e-46 157.5 0.0 4.3e-46 157.3 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Ribonuc_L-PSP PF01042.21 gi|330834693|ref|YP_004409421.1| - 1.8e-36 124.8 0.0 2e-36 124.7 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP CbiA PF01656.23 gi|330834695|ref|YP_004409423.1| - 1.3e-11 44.6 0.0 1.6e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330834695|ref|YP_004409423.1| - 5.2e-07 29.8 1.7 7e-06 26.1 1.0 2.5 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 gi|330834695|ref|YP_004409423.1| - 2.1e-06 27.4 0.2 3.8e-06 26.5 0.2 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330834695|ref|YP_004409423.1| - 0.0019 17.4 0.1 0.0024 17.1 0.1 1.4 1 1 0 1 1 1 1 Anion-transporting ATPase SKI PF01202.22 gi|330834695|ref|YP_004409423.1| - 0.05 13.7 0.0 0.34 11.0 0.0 2.0 2 0 0 2 2 2 0 Shikimate kinase MipZ PF09140.11 gi|330834695|ref|YP_004409423.1| - 0.15 11.4 0.0 0.23 10.7 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ PALP PF00291.25 gi|330834696|ref|YP_004409424.1| - 3.2e-56 190.9 0.0 3.8e-56 190.7 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|330834696|ref|YP_004409424.1| - 0.027 14.3 0.3 0.045 13.6 0.3 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Succ_CoA_lig PF13607.6 gi|330834697|ref|YP_004409425.1| - 1.1e-44 151.6 0.0 2.2e-44 150.6 0.0 1.5 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain ATP-grasp_5 PF13549.6 gi|330834697|ref|YP_004409425.1| - 2e-43 148.4 0.1 3.8e-43 147.5 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain CoA_binding_2 PF13380.6 gi|330834697|ref|YP_004409425.1| - 7.4e-23 81.3 0.0 2.2e-22 79.8 0.0 1.9 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|330834697|ref|YP_004409425.1| - 2.7e-12 47.2 0.7 9.4e-12 45.5 0.2 2.3 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|330834697|ref|YP_004409425.1| - 0.0019 17.8 0.1 0.2 11.2 0.0 3.1 3 0 0 3 3 3 1 ATP-grasp domain RimK PF08443.11 gi|330834697|ref|YP_004409425.1| - 0.0064 16.1 0.0 0.022 14.3 0.0 1.9 2 0 0 2 2 2 1 RimK-like ATP-grasp domain F420_oxidored PF03807.17 gi|330834697|ref|YP_004409425.1| - 0.022 15.3 0.6 0.081 13.5 0.1 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ATP-grasp PF02222.22 gi|330834697|ref|YP_004409425.1| - 0.035 13.7 0.1 0.17 11.4 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain NAD_Gly3P_dh_N PF01210.23 gi|330834697|ref|YP_004409425.1| - 0.085 12.8 0.1 0.42 10.6 0.1 2.0 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|330834697|ref|YP_004409425.1| - 0.1 12.8 0.0 0.3 11.3 0.0 1.8 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Vps8 PF12816.7 gi|330834697|ref|YP_004409425.1| - 0.11 12.0 0.0 6.6 6.2 0.0 2.5 2 0 0 2 2 2 0 Golgi CORVET complex core vacuolar protein 8 DUF2023 PF09633.10 gi|330834698|ref|YP_004409426.1| - 0.073 13.2 0.0 0.084 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2023) MarR_2 PF12802.7 gi|330834699|ref|YP_004409427.1| - 5e-10 39.1 0.0 7.5e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|330834699|ref|YP_004409427.1| - 6.3e-10 38.9 1.2 8.3e-10 38.5 1.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.19 gi|330834699|ref|YP_004409427.1| - 1.9e-09 37.3 0.3 3.6e-09 36.4 0.1 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|330834699|ref|YP_004409427.1| - 3.5e-09 37.0 0.1 5.6e-09 36.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|330834699|ref|YP_004409427.1| - 9.1e-09 35.1 0.1 1.3e-08 34.6 0.1 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|330834699|ref|YP_004409427.1| - 2.9e-06 27.4 0.0 5e-06 26.6 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain RuvB_C PF05491.13 gi|330834699|ref|YP_004409427.1| - 1.7e-05 24.6 0.1 3.2e-05 23.7 0.1 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_Crp_2 PF13545.6 gi|330834699|ref|YP_004409427.1| - 0.00012 21.9 0.0 0.00024 21.0 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|330834699|ref|YP_004409427.1| - 0.00022 20.7 0.2 0.00032 20.2 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_DeoR PF08220.12 gi|330834699|ref|YP_004409427.1| - 0.0005 19.8 0.0 0.0013 18.4 0.0 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|330834699|ref|YP_004409427.1| - 0.00089 19.2 0.1 0.0016 18.3 0.1 1.4 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|330834699|ref|YP_004409427.1| - 0.0032 17.1 0.1 0.0077 15.9 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family TetR_N PF00440.23 gi|330834699|ref|YP_004409427.1| - 0.0053 16.5 0.2 3.4 7.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory proteins, tetR family HTH_36 PF13730.6 gi|330834699|ref|YP_004409427.1| - 0.0064 16.4 0.1 0.035 14.1 0.3 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain SMC_ScpB PF04079.16 gi|330834699|ref|YP_004409427.1| - 0.008 15.8 0.1 0.015 14.9 0.1 1.5 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_34 PF13601.6 gi|330834699|ref|YP_004409427.1| - 0.0095 16.1 0.0 0.017 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain KORA PF16509.5 gi|330834699|ref|YP_004409427.1| - 0.0098 16.2 0.0 0.016 15.5 0.0 1.3 1 0 0 1 1 1 1 TrfB plasmid transcriptional repressor DUF4423 PF14394.6 gi|330834699|ref|YP_004409427.1| - 0.035 13.8 0.1 0.07 12.8 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Penicillinase_R PF03965.16 gi|330834699|ref|YP_004409427.1| - 0.039 14.3 0.4 0.069 13.5 0.4 1.6 1 1 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.20 gi|330834699|ref|YP_004409427.1| - 0.043 13.7 0.0 0.074 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Cullin_Nedd8 PF10557.9 gi|330834699|ref|YP_004409427.1| - 0.05 13.6 0.2 2 8.5 0.0 2.3 2 0 0 2 2 2 0 Cullin protein neddylation domain E3_UFM1_ligase PF09743.9 gi|330834699|ref|YP_004409427.1| - 0.058 13.0 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 Phage_rep_O PF04492.13 gi|330834699|ref|YP_004409427.1| - 0.068 13.8 0.1 0.15 12.7 0.1 1.5 1 1 0 1 1 1 0 Bacteriophage replication protein O HTH_20 PF12840.7 gi|330834699|ref|YP_004409427.1| - 0.075 13.1 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|330834699|ref|YP_004409427.1| - 0.077 13.1 0.0 0.096 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF3143 PF11341.8 gi|330834699|ref|YP_004409427.1| - 0.084 13.2 0.0 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3143) HTH_10 PF04967.12 gi|330834699|ref|YP_004409427.1| - 0.084 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 HTH DNA binding domain Rrf2 PF02082.20 gi|330834699|ref|YP_004409427.1| - 0.12 12.7 0.0 0.22 11.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Mlh1_C PF16413.5 gi|330834700|ref|YP_004409428.1| - 0.0056 16.1 1.1 0.0065 15.9 1.1 1.1 1 0 0 1 1 1 1 DNA mismatch repair protein Mlh1 C-terminus Vfa1 PF08432.10 gi|330834700|ref|YP_004409428.1| - 0.084 13.2 6.2 0.11 12.8 6.2 1.1 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 FUN14 PF04930.15 gi|330834701|ref|YP_004409429.1| - 0.0065 16.9 10.1 0.13 12.7 10.1 2.1 1 1 0 1 1 1 1 FUN14 family DUF1624 PF07786.12 gi|330834701|ref|YP_004409429.1| - 0.017 14.7 4.5 0.02 14.5 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1624) DUF1275 PF06912.11 gi|330834701|ref|YP_004409429.1| - 0.051 13.5 4.8 0.069 13.1 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) MtrC PF04211.13 gi|330834701|ref|YP_004409429.1| - 0.12 11.4 13.9 0.052 12.6 10.3 1.8 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C DUF883 PF05957.13 gi|330834701|ref|YP_004409429.1| - 0.13 12.9 0.5 22 5.7 0.6 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) YuiB PF14068.6 gi|330834701|ref|YP_004409429.1| - 0.61 10.7 8.0 0.85 10.2 8.0 1.3 1 1 0 1 1 1 0 Putative membrane protein Wzy_C PF04932.15 gi|330834701|ref|YP_004409429.1| - 0.74 9.4 12.9 0.32 10.6 11.2 1.4 1 1 0 1 1 1 0 O-Antigen ligase SPC12 PF06645.13 gi|330834701|ref|YP_004409429.1| - 2.3 8.4 10.0 6.8 6.9 7.0 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PrgI PF12666.7 gi|330834701|ref|YP_004409429.1| - 3.9 8.2 8.2 5.3 7.8 8.2 1.4 1 1 0 1 1 1 0 PrgI family protein DUF3487 PF11990.8 gi|330834701|ref|YP_004409429.1| - 5.9 6.8 10.2 3.8 7.4 7.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) DUF4898 PF16239.5 gi|330834702|ref|YP_004409430.1| - 1.8e-17 63.1 1.8 2.1e-17 62.8 1.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4898) Peptidase_M28 PF04389.17 gi|330834704|ref|YP_004409432.1| - 1.8e-12 47.3 0.0 6.6e-11 42.3 0.0 2.1 1 1 0 1 1 1 1 Peptidase family M28 Peptidase_M20 PF01546.28 gi|330834704|ref|YP_004409432.1| - 0.067 12.9 0.0 0.13 12.0 0.0 1.6 1 1 0 1 1 1 0 Peptidase family M20/M25/M40 Ndr PF03096.14 gi|330834705|ref|YP_004409433.1| - 0.003 16.3 0.0 0.0037 16.0 0.0 1.0 1 0 0 1 1 1 1 Ndr family UVR PF02151.19 gi|330834705|ref|YP_004409433.1| - 0.0082 15.9 1.0 0.016 15.0 0.5 1.8 1 1 0 1 1 1 1 UvrB/uvrC motif FlgI PF02119.16 gi|330834705|ref|YP_004409433.1| - 0.06 12.3 0.3 0.078 11.9 0.3 1.1 1 0 0 1 1 1 0 Flagellar P-ring protein BcrAD_BadFG PF01869.20 gi|330834706|ref|YP_004409434.1| - 3.6e-30 105.4 0.6 5.3e-30 104.8 0.6 1.2 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family ROK PF00480.20 gi|330834706|ref|YP_004409434.1| - 0.049 13.1 0.8 0.41 10.1 0.0 2.0 2 0 0 2 2 2 0 ROK family PmbA_TldD PF01523.16 gi|330834707|ref|YP_004409435.1| - 8.5e-13 48.8 0.0 1.3e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase Alpha_kinase PF02816.18 gi|330834707|ref|YP_004409435.1| - 0.015 15.4 0.1 0.023 14.9 0.1 1.2 1 0 0 1 1 1 0 Alpha-kinase family TrmO PF01980.16 gi|330834708|ref|YP_004409436.1| - 6.3e-33 113.5 0.0 8.8e-33 113.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O XdhC_C PF13478.6 gi|330834709|ref|YP_004409437.1| - 3e-20 73.0 0.1 4e-20 72.6 0.1 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain DUF2689 PF10894.8 gi|330834709|ref|YP_004409437.1| - 0.12 12.1 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2689) Polyketide_cyc2 PF10604.9 gi|330834710|ref|YP_004409438.1| - 0.014 15.6 0.0 0.018 15.3 0.0 1.1 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport ArnB_C PF18677.1 gi|330834711|ref|YP_004409439.1| - 2.1e-23 82.2 6.9 2.1e-23 82.2 6.9 2.1 3 0 0 3 3 3 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|330834711|ref|YP_004409439.1| - 4.5e-15 56.3 0.0 5.7e-14 52.7 0.0 2.4 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|330834711|ref|YP_004409439.1| - 6.9e-13 49.2 0.0 4.1e-12 46.7 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|330834711|ref|YP_004409439.1| - 1e-10 41.7 0.0 6.7e-10 39.1 0.0 2.2 2 1 0 2 2 2 1 von Willebrand factor type A domain DUF2201 PF09967.9 gi|330834711|ref|YP_004409439.1| - 6.9e-06 26.2 0.0 1.5e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 VWA-like domain (DUF2201) VWA_CoxE PF05762.14 gi|330834711|ref|YP_004409439.1| - 0.0073 15.7 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein BPD_transp_1 PF00528.22 gi|330834712|ref|YP_004409440.1| - 4.5e-12 46.1 13.2 4.5e-12 46.1 13.2 3.1 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|330834714|ref|YP_004409442.1| - 4.5e-06 27.2 0.0 6.5e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|330834714|ref|YP_004409442.1| - 5.1e-06 26.9 3.4 0.0073 16.8 0.6 2.4 1 1 1 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region oligo_HPY PF08352.12 gi|330834715|ref|YP_004409443.1| - 0.0001 22.8 0.0 0.00018 21.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region NRN1 PF15056.6 gi|330834715|ref|YP_004409443.1| - 0.18 11.9 0.3 24 5.1 0.0 2.2 2 0 0 2 2 2 0 Neuritin protein family Helicase_C PF00271.31 gi|330834716|ref|YP_004409444.1| - 2.3e-16 60.1 0.1 1.3e-15 57.7 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|330834716|ref|YP_004409444.1| - 4.3e-15 55.9 0.0 1.3e-14 54.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330834716|ref|YP_004409444.1| - 3.5e-07 30.4 0.0 8.4e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|330834716|ref|YP_004409444.1| - 1.7e-05 25.1 0.0 6.3e-05 23.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|330834716|ref|YP_004409444.1| - 0.0036 17.2 0.2 0.011 15.7 0.1 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea SNF2_N PF00176.23 gi|330834716|ref|YP_004409444.1| - 0.013 14.3 0.1 0.021 13.6 0.1 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_24 PF13479.6 gi|330834716|ref|YP_004409444.1| - 0.018 14.8 0.0 0.048 13.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|330834716|ref|YP_004409444.1| - 0.04 13.3 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein AAA_7 PF12775.7 gi|330834716|ref|YP_004409444.1| - 0.13 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|330834717|ref|YP_004409445.1| - 1.7e-28 99.8 0.0 2.6e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330834717|ref|YP_004409445.1| - 5.9e-08 32.9 0.3 0.0012 18.7 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|330834717|ref|YP_004409445.1| - 3e-05 24.0 0.0 4.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase SMC_N PF02463.19 gi|330834717|ref|YP_004409445.1| - 6.9e-05 22.4 0.2 0.34 10.3 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330834717|ref|YP_004409445.1| - 0.00034 21.2 0.1 0.00095 19.7 0.1 1.6 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|330834717|ref|YP_004409445.1| - 0.00035 21.0 0.0 0.00053 20.4 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|330834717|ref|YP_004409445.1| - 0.00048 19.8 0.0 0.00097 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330834717|ref|YP_004409445.1| - 0.00054 19.8 0.0 0.0008 19.2 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330834717|ref|YP_004409445.1| - 0.00074 19.8 0.2 0.0037 17.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330834717|ref|YP_004409445.1| - 0.012 16.0 0.1 0.066 13.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|330834717|ref|YP_004409445.1| - 0.015 15.3 0.1 0.033 14.3 0.1 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|330834717|ref|YP_004409445.1| - 0.016 14.9 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|330834717|ref|YP_004409445.1| - 0.017 13.9 0.2 3.4 6.3 0.1 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.15 gi|330834717|ref|YP_004409445.1| - 0.085 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|330834717|ref|YP_004409445.1| - 0.1 13.2 0.1 0.26 11.8 0.1 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|330834717|ref|YP_004409445.1| - 0.13 11.4 0.0 0.48 9.6 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain AAA_33 PF13671.6 gi|330834717|ref|YP_004409445.1| - 0.16 12.1 0.2 0.24 11.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain GBP_repeat PF02526.14 gi|330834717|ref|YP_004409445.1| - 0.26 11.0 0.5 3 7.6 0.0 2.3 2 0 0 2 2 2 0 Glycophorin-binding protein BPD_transp_1 PF00528.22 gi|330834718|ref|YP_004409446.1| - 2.7e-24 85.9 39.5 1.1e-14 54.6 11.8 3.1 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3754 PF12576.8 gi|330834718|ref|YP_004409446.1| - 0.36 10.8 4.6 0.16 11.9 0.3 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3754) Carboxyl_trans PF01039.22 gi|330834719|ref|YP_004409447.1| - 9.2e-184 611.7 2.5 1.1e-183 611.5 2.5 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|330834719|ref|YP_004409447.1| - 0.0022 17.5 3.1 0.0061 16.1 0.2 2.4 2 1 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) UPF0029 PF01205.19 gi|330834719|ref|YP_004409447.1| - 0.07 13.5 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein family UPF0029 NAD_synthase PF02540.17 gi|330834719|ref|YP_004409447.1| - 0.11 11.6 0.1 0.2 10.7 0.1 1.4 1 0 0 1 1 1 0 NAD synthase DEAD PF00270.29 gi|330834721|ref|YP_004409449.1| - 2.3e-24 86.1 0.0 2.6e-23 82.7 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|330834721|ref|YP_004409449.1| - 2.1e-11 44.1 0.0 5.2e-11 42.8 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|330834721|ref|YP_004409449.1| - 1.5e-09 38.2 0.0 2.9e-08 34.0 0.1 2.9 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|330834721|ref|YP_004409449.1| - 9.2e-05 23.0 0.2 0.00024 21.6 0.2 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain ATPase PF06745.13 gi|330834721|ref|YP_004409449.1| - 0.0046 16.3 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 KaiC SNF2_N PF00176.23 gi|330834721|ref|YP_004409449.1| - 0.034 12.9 0.0 0.12 11.1 0.0 1.8 2 0 0 2 2 2 0 SNF2 family N-terminal domain AA_permease PF00324.21 gi|330834722|ref|YP_004409450.1| - 2.7e-22 79.0 48.4 2.7e-22 79.0 48.4 1.6 1 1 1 2 2 2 1 Amino acid permease AA_permease_2 PF13520.6 gi|330834722|ref|YP_004409450.1| - 7.1e-15 54.8 52.9 1e-14 54.2 52.9 1.2 1 0 0 1 1 1 1 Amino acid permease Nitro_FeMo-Co PF02579.17 gi|330834723|ref|YP_004409451.1| - 2.5e-07 30.9 0.0 3.1e-07 30.6 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor PadR PF03551.14 gi|330834724|ref|YP_004409452.1| - 5.4e-16 58.3 0.0 1.1e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|330834724|ref|YP_004409452.1| - 0.00028 21.5 0.6 0.0016 19.1 0.0 2.3 2 1 0 2 2 2 1 Replication terminator protein HTH_45 PF14947.6 gi|330834724|ref|YP_004409452.1| - 0.0057 16.6 0.6 0.022 14.7 0.2 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|330834724|ref|YP_004409452.1| - 0.01 15.6 0.3 0.016 15.0 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) EMP24_GP25L PF01105.24 gi|330834724|ref|YP_004409452.1| - 0.029 14.3 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD DUF2120 PF09893.9 gi|330834724|ref|YP_004409452.1| - 0.16 12.1 2.9 0.1 12.7 1.2 1.5 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2120) CdvA PF18822.1 gi|330834724|ref|YP_004409452.1| - 0.24 11.2 6.2 0.37 10.6 1.5 2.2 1 1 1 2 2 2 0 CdvA-like coiled-coil domain NBD94 PF16830.5 gi|330834724|ref|YP_004409452.1| - 5.6 7.4 9.5 0.93 9.9 0.2 3.3 3 1 1 4 4 4 0 Nucleotide-Binding Domain 94 of RH Pro-kuma_activ PF09286.11 gi|330834726|ref|YP_004409454.1| - 2.2e-09 37.8 0.0 6.7e-09 36.2 0.0 1.8 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|330834726|ref|YP_004409454.1| - 2.5e-05 23.7 1.3 2.5e-05 23.7 1.3 2.4 3 0 0 3 3 3 1 Subtilase family MG2 PF01835.19 gi|330834726|ref|YP_004409454.1| - 0.0035 17.8 0.0 0.9 10.0 0.0 3.8 4 0 0 4 4 4 1 MG2 domain PNGaseA PF12222.8 gi|330834727|ref|YP_004409455.1| - 1.3e-30 106.6 1.1 9.5e-29 100.5 1.1 2.2 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A Endonuclease_5 PF04493.14 gi|330834728|ref|YP_004409456.1| - 4.2e-34 118.0 0.1 5.5e-34 117.6 0.1 1.2 1 0 0 1 1 1 1 Endonuclease V DSPc PF00782.20 gi|330834729|ref|YP_004409457.1| - 1.5e-09 37.8 0.0 2.4e-09 37.1 0.0 1.4 1 1 0 1 1 1 1 Dual specificity phosphatase, catalytic domain PTPlike_phytase PF14566.6 gi|330834729|ref|YP_004409457.1| - 6.9e-08 32.8 0.0 8.3e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase PF00102.27 gi|330834729|ref|YP_004409457.1| - 6.9e-08 32.3 0.0 9.2e-08 31.9 0.0 1.3 1 1 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.6 gi|330834729|ref|YP_004409457.1| - 7.3e-05 22.8 0.1 0.00019 21.5 0.1 1.5 1 1 0 2 2 2 1 Tyrosine phosphatase family CDKN3 PF05706.12 gi|330834729|ref|YP_004409457.1| - 0.0001 22.0 0.0 0.00013 21.7 0.0 1.1 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) GATase PF00117.28 gi|330834730|ref|YP_004409458.1| - 5.2e-34 117.7 0.0 5.8e-34 117.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330834730|ref|YP_004409458.1| - 2.9e-08 33.7 0.2 4.9e-07 29.7 0.1 2.5 1 1 1 2 2 2 1 Peptidase C26 HTS PF04204.16 gi|330834730|ref|YP_004409458.1| - 0.0015 17.5 0.0 0.0023 16.9 0.0 1.3 1 0 0 1 1 1 1 Homoserine O-succinyltransferase Amino_oxidase PF01593.24 gi|330834731|ref|YP_004409459.1| - 9.9e-13 48.2 0.0 1.4e-06 27.9 0.0 2.4 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|330834731|ref|YP_004409459.1| - 4.1e-09 36.5 0.2 1.2e-08 35.0 0.2 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|330834731|ref|YP_004409459.1| - 5.7e-09 36.0 0.3 1.3e-07 31.6 0.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|330834731|ref|YP_004409459.1| - 2.8e-08 34.2 2.6 0.0018 18.8 0.3 3.2 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|330834731|ref|YP_004409459.1| - 5.5e-07 29.1 1.2 0.0042 16.4 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|330834731|ref|YP_004409459.1| - 8e-07 28.5 0.3 0.0042 16.4 0.0 2.2 2 0 0 2 2 2 2 Thi4 family FAD_binding_2 PF00890.24 gi|330834731|ref|YP_004409459.1| - 1.5e-05 24.3 0.5 0.035 13.2 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|330834731|ref|YP_004409459.1| - 9.4e-05 21.3 1.9 0.027 13.2 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|330834731|ref|YP_004409459.1| - 0.0015 17.9 0.0 0.0092 15.4 0.0 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|330834731|ref|YP_004409459.1| - 0.013 14.8 0.4 0.026 13.8 0.2 1.6 2 0 0 2 2 2 0 FAD binding domain GIDA PF01134.22 gi|330834731|ref|YP_004409459.1| - 0.034 13.2 0.2 0.034 13.2 0.2 2.7 3 0 0 3 3 3 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|330834731|ref|YP_004409459.1| - 0.035 13.4 0.5 0.19 11.0 0.0 2.0 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|330834731|ref|YP_004409459.1| - 0.086 12.2 0.6 1 8.7 0.1 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.6 gi|330834731|ref|YP_004409459.1| - 0.1 11.8 1.5 0.53 9.5 0.1 2.4 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2299 PF10061.9 gi|330834732|ref|YP_004409460.1| - 2.8e-38 130.8 0.0 3.2e-38 130.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) DUF2299 PF10061.9 gi|330834733|ref|YP_004409461.1| - 7.5e-40 135.9 0.2 8.7e-40 135.7 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) MFS_1 PF07690.16 gi|330834734|ref|YP_004409462.1| - 8.7e-19 67.6 30.9 4.5e-10 39.0 14.1 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|330834734|ref|YP_004409462.1| - 0.00063 18.7 5.0 0.099 11.5 0.1 3.0 2 1 1 3 3 3 2 MFS_1 like family Sugar_tr PF00083.24 gi|330834734|ref|YP_004409462.1| - 0.0017 17.3 5.7 0.0017 17.3 5.7 2.9 1 1 2 3 3 3 1 Sugar (and other) transporter FAA_hydrolase PF01557.18 gi|330834735|ref|YP_004409463.1| - 8.4e-72 241.4 0.0 1e-71 241.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2173 PF09941.9 gi|330834736|ref|YP_004409464.1| - 1.9e-42 143.9 4.3 2.1e-42 143.7 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) MFS_1 PF07690.16 gi|330834739|ref|YP_004409467.1| - 1.1e-11 44.3 22.0 8.5e-09 34.8 18.1 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily UNC-93 PF05978.16 gi|330834739|ref|YP_004409467.1| - 7.8e-06 25.7 5.4 7.8e-06 25.7 5.4 2.0 1 1 1 2 2 2 1 Ion channel regulatory protein UNC-93 OATP PF03137.20 gi|330834739|ref|YP_004409467.1| - 0.00031 19.2 2.4 0.00042 18.8 2.4 1.3 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family NADH-u_ox-rdase PF10785.9 gi|330834739|ref|YP_004409467.1| - 8.1 7.2 6.7 9.5 7.0 1.4 3.4 2 2 1 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Helicase_C PF00271.31 gi|330834740|ref|YP_004409468.1| - 8.8e-24 84.0 1.0 5.4e-20 71.8 0.1 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330834740|ref|YP_004409468.1| - 3.3e-19 69.5 0.0 1.3e-18 67.6 0.0 2.1 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|330834740|ref|YP_004409468.1| - 2e-13 50.5 0.0 9.2e-13 48.3 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|330834740|ref|YP_004409468.1| - 2.6e-06 26.8 0.0 4.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase AAA_22 PF13401.6 gi|330834740|ref|YP_004409468.1| - 0.0023 18.2 0.0 0.018 15.3 0.0 2.4 3 0 0 3 3 3 1 AAA domain T2SSE PF00437.20 gi|330834740|ref|YP_004409468.1| - 0.0074 15.4 0.0 0.014 14.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Flavi_DEAD PF07652.14 gi|330834740|ref|YP_004409468.1| - 0.0082 16.1 0.2 0.13 12.3 0.0 2.8 2 1 0 2 2 2 1 Flavivirus DEAD domain DUF2075 PF09848.9 gi|330834740|ref|YP_004409468.1| - 0.016 14.4 0.0 0.052 12.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.6 gi|330834740|ref|YP_004409468.1| - 0.031 14.0 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|330834740|ref|YP_004409468.1| - 0.043 13.6 0.0 1.2 8.9 0.0 2.3 1 1 1 2 2 2 0 AAA domain CbiA PF01656.23 gi|330834740|ref|YP_004409468.1| - 0.099 12.7 0.0 0.31 11.1 0.0 2.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SWI2_SNF2 PF18766.1 gi|330834740|ref|YP_004409468.1| - 0.15 11.7 0.0 0.53 9.9 0.0 1.9 2 0 0 2 2 2 0 SWI2/SNF2 ATPase AMP-binding PF00501.28 gi|330834741|ref|YP_004409469.1| - 6e-86 288.7 0.0 7.1e-86 288.4 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330834741|ref|YP_004409469.1| - 6.5e-26 91.1 0.1 1.8e-25 89.7 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330834741|ref|YP_004409469.1| - 3.4e-18 65.3 1.0 3.4e-18 65.3 1.0 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus PRORP PF16953.5 gi|330834741|ref|YP_004409469.1| - 0.18 11.3 0.0 0.34 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein-only RNase P TENA_THI-4 PF03070.16 gi|330834742|ref|YP_004409470.1| - 7.3e-38 130.5 0.3 8.2e-38 130.3 0.3 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family GATase PF00117.28 gi|330834743|ref|YP_004409471.1| - 4.6e-17 62.4 0.0 5.7e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330834743|ref|YP_004409471.1| - 2.4e-08 34.0 0.9 5.6e-08 32.8 0.3 1.9 2 1 0 2 2 2 1 Peptidase C26 HTS PF04204.16 gi|330834743|ref|YP_004409471.1| - 0.0041 16.1 0.0 0.013 14.5 0.0 1.7 1 1 1 2 2 2 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|330834743|ref|YP_004409471.1| - 0.0043 16.9 0.0 0.0068 16.2 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|330834743|ref|YP_004409471.1| - 0.05 13.2 0.0 0.074 12.6 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Methyltransf_11 PF08241.12 gi|330834744|ref|YP_004409472.1| - 7.9e-16 58.5 0.0 1.1e-15 58.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330834744|ref|YP_004409472.1| - 8.5e-15 54.9 0.0 9.5e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330834744|ref|YP_004409472.1| - 5.1e-14 52.7 0.0 8.8e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330834744|ref|YP_004409472.1| - 4.2e-13 49.5 0.0 4.6e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330834744|ref|YP_004409472.1| - 7.2e-08 33.1 0.0 2.5e-07 31.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330834744|ref|YP_004409472.1| - 1.3e-07 31.2 0.0 2.3e-07 30.4 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|330834744|ref|YP_004409472.1| - 2.8e-06 27.0 0.0 4.1e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW PCMT PF01135.19 gi|330834744|ref|YP_004409472.1| - 1.1e-05 25.3 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|330834744|ref|YP_004409472.1| - 0.00016 21.2 0.0 0.0002 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|330834744|ref|YP_004409472.1| - 0.00027 21.1 0.0 0.0003 20.9 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_8 PF05148.15 gi|330834744|ref|YP_004409472.1| - 0.063 13.1 0.1 0.1 12.5 0.0 1.4 1 1 1 2 2 2 0 Hypothetical methyltransferase eIF3m_C_helix PF18005.1 gi|330834744|ref|YP_004409472.1| - 0.068 12.9 0.4 0.13 12.0 0.4 1.4 1 0 0 1 1 1 0 eIF3 subunit M, C-terminal helix Fibrillarin PF01269.17 gi|330834744|ref|YP_004409472.1| - 0.16 11.1 0.0 0.25 10.4 0.0 1.3 1 1 0 1 1 1 0 Fibrillarin 4HBT_2 PF13279.6 gi|330834745|ref|YP_004409473.1| - 1.5e-08 35.1 0.0 1.8e-08 34.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|330834745|ref|YP_004409473.1| - 1.1e-07 32.0 0.0 1.6e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily MaoC_dehydrat_N PF13452.6 gi|330834745|ref|YP_004409473.1| - 0.089 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 N-terminal half of MaoC dehydratase Pyr_redox_2 PF07992.14 gi|330834746|ref|YP_004409474.1| - 9.4e-13 48.0 0.0 3.5e-12 46.2 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330834746|ref|YP_004409474.1| - 4.8e-05 23.8 0.0 0.042 14.4 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330834746|ref|YP_004409474.1| - 0.00016 21.1 0.2 0.33 10.2 0.0 2.4 2 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330834746|ref|YP_004409474.1| - 0.00056 19.6 0.0 0.049 13.2 0.0 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330834746|ref|YP_004409474.1| - 0.017 15.3 0.0 0.056 13.7 0.0 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|330834746|ref|YP_004409474.1| - 0.047 14.0 0.0 0.1 12.9 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Glyco_hydro_15 PF00723.21 gi|330834748|ref|YP_004409476.1| - 1.7e-48 165.6 0.0 4.3e-46 157.6 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolases family 15 TPR_19 PF14559.6 gi|330834748|ref|YP_004409476.1| - 2.7e-05 24.6 0.0 0.001 19.5 0.0 2.5 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330834748|ref|YP_004409476.1| - 5.9e-05 23.3 0.1 0.0028 18.1 0.0 2.9 3 0 0 3 3 2 1 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330834748|ref|YP_004409476.1| - 0.0037 17.9 0.1 0.021 15.6 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330834748|ref|YP_004409476.1| - 0.0067 16.6 0.0 0.023 14.9 0.0 1.9 1 0 0 1 1 1 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330834748|ref|YP_004409476.1| - 0.017 15.4 0.0 0.043 14.1 0.0 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330834748|ref|YP_004409476.1| - 0.018 15.6 0.1 0.092 13.4 0.0 2.2 2 0 0 2 2 2 0 Tetratricopeptide repeat GDE_C PF06202.14 gi|330834748|ref|YP_004409476.1| - 0.025 13.5 0.2 0.1 11.5 0.1 1.9 2 0 0 2 2 2 0 Amylo-alpha-1,6-glucosidase TPR_7 PF13176.6 gi|330834748|ref|YP_004409476.1| - 0.042 13.9 0.1 0.13 12.4 0.1 1.8 1 0 0 1 1 1 0 Tetratricopeptide repeat Glyco_hydro_125 PF06824.11 gi|330834748|ref|YP_004409476.1| - 0.045 12.6 0.0 0.63 8.9 0.0 2.1 2 0 0 2 2 2 0 Metal-independent alpha-mannosidase (GH125) ANAPC3 PF12895.7 gi|330834748|ref|YP_004409476.1| - 0.048 13.9 0.0 0.4 10.9 0.0 2.3 2 0 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_2 PF07719.17 gi|330834748|ref|YP_004409476.1| - 0.17 12.0 0.0 0.8 10.0 0.0 2.1 1 0 0 1 1 1 0 Tetratricopeptide repeat HpaB_N PF11794.8 gi|330834749|ref|YP_004409477.1| - 2.9e-84 283.0 0.0 4.3e-84 282.4 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|330834749|ref|YP_004409477.1| - 7e-65 217.9 0.1 9.7e-65 217.4 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|330834749|ref|YP_004409477.1| - 0.012 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain FdhD-NarQ PF02634.15 gi|330834750|ref|YP_004409478.1| - 8e-72 241.7 0.0 9.1e-72 241.6 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DUF1641 PF07849.11 gi|330834751|ref|YP_004409479.1| - 8.1e-12 44.8 0.1 8.1e-12 44.8 0.1 2.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1641) HHH_9 PF17674.1 gi|330834751|ref|YP_004409479.1| - 0.079 13.9 0.0 0.2 12.6 0.0 1.6 2 0 0 2 2 2 0 HHH domain L27_2 PF09045.10 gi|330834751|ref|YP_004409479.1| - 0.11 12.5 0.3 0.2 11.7 0.3 1.4 1 0 0 1 1 1 0 L27_2 Molybdopterin PF00384.22 gi|330834752|ref|YP_004409480.1| - 5.5e-82 276.0 0.0 7.1e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|330834752|ref|YP_004409480.1| - 2.7e-20 72.4 0.0 5.6e-20 71.4 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|330834752|ref|YP_004409480.1| - 2.3e-18 65.9 0.2 2.3e-18 65.9 0.2 2.7 3 0 0 3 3 3 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|330834752|ref|YP_004409480.1| - 1.9e-11 43.9 0.1 4.3e-11 42.7 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|330834752|ref|YP_004409480.1| - 8.7e-11 41.2 18.9 4e-06 26.4 3.1 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834752|ref|YP_004409480.1| - 6.4e-09 35.8 6.7 6.4e-09 35.8 6.7 2.3 3 1 0 3 3 1 1 4Fe-4S dicluster domain NADH-G_4Fe-4S_3 PF10588.9 gi|330834752|ref|YP_004409480.1| - 7.5e-08 31.8 1.1 7.5e-08 31.8 1.1 2.5 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_6 PF12837.7 gi|330834752|ref|YP_004409480.1| - 1.4e-07 31.3 19.2 0.00025 21.0 3.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330834752|ref|YP_004409480.1| - 3.5e-07 30.7 8.5 3.5e-07 30.7 8.5 3.7 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834752|ref|YP_004409480.1| - 3.1e-06 27.2 17.6 0.00012 22.2 1.8 3.1 4 0 0 4 4 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834752|ref|YP_004409480.1| - 9.8e-06 25.6 21.3 0.0019 18.4 0.2 3.9 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330834752|ref|YP_004409480.1| - 0.00075 19.9 8.9 0.00075 19.9 8.9 3.1 1 1 2 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330834752|ref|YP_004409480.1| - 0.00089 19.2 15.1 0.004 17.2 2.1 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330834752|ref|YP_004409480.1| - 0.0015 19.1 13.8 0.14 12.8 0.1 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain TPP_enzyme_M PF00205.22 gi|330834752|ref|YP_004409480.1| - 0.0022 17.7 0.1 0.25 11.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Fer4_16 PF13484.6 gi|330834752|ref|YP_004409480.1| - 0.0047 17.8 18.6 0.017 16.1 5.1 3.7 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer2 PF00111.27 gi|330834752|ref|YP_004409480.1| - 0.0075 16.2 0.5 0.0075 16.2 0.5 3.3 2 1 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_18 PF13746.6 gi|330834752|ref|YP_004409480.1| - 0.058 13.6 12.4 0.054 13.7 0.7 2.8 3 0 0 3 3 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330834752|ref|YP_004409480.1| - 0.12 13.0 20.9 0.07 13.7 3.8 3.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330834752|ref|YP_004409480.1| - 0.27 11.8 11.9 3.7 8.2 1.9 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330834752|ref|YP_004409480.1| - 0.47 11.2 8.4 0.72 10.6 1.7 2.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain Ribonuc_red_sm PF00268.21 gi|330834753|ref|YP_004409481.1| - 0.0014 18.1 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain AA_permease PF00324.21 gi|330834754|ref|YP_004409482.1| - 3.9e-31 108.2 49.1 5e-31 107.8 49.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|330834754|ref|YP_004409482.1| - 1.2e-23 83.6 56.0 2.8e-23 82.5 56.1 1.5 1 1 0 1 1 1 1 Amino acid permease AhpC-TSA PF00578.21 gi|330834755|ref|YP_004409483.1| - 3.2e-39 133.7 0.0 3.7e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330834755|ref|YP_004409483.1| - 6.6e-24 84.3 0.0 7.4e-24 84.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|330834755|ref|YP_004409483.1| - 0.0002 21.3 0.1 0.0034 17.3 0.1 2.1 1 1 1 2 2 2 1 SCO1/SenC Thioredoxin_8 PF13905.6 gi|330834755|ref|YP_004409483.1| - 0.0023 18.2 0.0 0.0038 17.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA_2 PF13911.6 gi|330834755|ref|YP_004409483.1| - 0.14 12.2 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Cyclase PF04199.13 gi|330834756|ref|YP_004409484.1| - 9.2e-30 103.7 0.0 1.2e-29 103.2 0.0 1.2 1 0 0 1 1 1 1 Putative cyclase Orthopox_A43R PF06517.11 gi|330834756|ref|YP_004409484.1| - 0.089 12.6 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Orthopoxvirus A43R protein Glycos_transf_1 PF00534.20 gi|330834757|ref|YP_004409485.1| - 1.3e-16 60.6 0.0 2.8e-16 59.5 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330834757|ref|YP_004409485.1| - 3.1e-13 50.3 0.0 2.6e-12 47.3 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330834757|ref|YP_004409485.1| - 0.0036 17.7 0.0 0.013 15.9 0.0 1.9 1 0 0 1 1 1 1 Glycosyl transferases group 1 HAD_2 PF13419.6 gi|330834757|ref|YP_004409485.1| - 0.018 15.2 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase PDDEXK_10 PF07788.11 gi|330834757|ref|YP_004409485.1| - 0.02 14.8 0.0 0.081 12.9 0.0 2.0 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily PIG-L PF02585.17 gi|330834760|ref|YP_004409488.1| - 3.1e-28 99.0 0.0 4.7e-28 98.4 0.0 1.3 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Nse4-Nse3_bdg PF15412.6 gi|330834760|ref|YP_004409488.1| - 0.011 15.8 0.0 0.018 15.1 0.0 1.3 1 0 0 1 1 1 0 Binding domain of Nse4/EID3 to Nse3-MAGE MR_MLE_C PF13378.6 gi|330834761|ref|YP_004409489.1| - 6.4e-56 189.4 0.0 1.3e-55 188.4 0.0 1.5 1 1 1 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|330834761|ref|YP_004409489.1| - 1.2e-15 57.7 0.0 2.5e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Radical_SAM PF04055.21 gi|330834762|ref|YP_004409490.1| - 1.6e-16 61.1 0.1 2.8e-15 57.1 0.1 2.2 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330834762|ref|YP_004409490.1| - 2.1e-08 34.6 0.1 6.8e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330834762|ref|YP_004409490.1| - 1.2e-07 31.9 0.0 3.4e-07 30.4 0.0 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|330834762|ref|YP_004409490.1| - 0.0077 16.7 0.1 0.025 15.1 0.0 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Glu_dehyd_C PF16912.5 gi|330834763|ref|YP_004409491.1| - 1.1e-31 110.0 0.0 1.4e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|330834763|ref|YP_004409491.1| - 4.2e-19 68.4 0.1 7.7e-19 67.6 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330834763|ref|YP_004409491.1| - 9.3e-05 22.4 0.0 0.00038 20.4 0.0 1.9 1 1 0 1 1 1 1 Zinc-binding dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330834763|ref|YP_004409491.1| - 0.00095 18.6 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|330834763|ref|YP_004409491.1| - 0.0069 16.5 0.1 0.018 15.2 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.16 gi|330834763|ref|YP_004409491.1| - 0.092 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|330834763|ref|YP_004409491.1| - 0.13 11.5 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain IlvN PF07991.12 gi|330834763|ref|YP_004409491.1| - 0.2 11.2 0.0 0.32 10.6 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Peptidase_S9 PF00326.21 gi|330834765|ref|YP_004409493.1| - 9.5e-42 142.9 0.0 1.4e-41 142.3 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|330834765|ref|YP_004409493.1| - 0.0033 17.1 0.1 0.91 9.1 0.0 2.2 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|330834765|ref|YP_004409493.1| - 0.0053 16.1 0.0 0.0094 15.2 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Sp38 PF07354.12 gi|330834766|ref|YP_004409494.1| - 0.23 10.9 0.0 0.32 10.4 0.0 1.2 1 0 0 1 1 1 0 Zona-pellucida-binding protein (Sp38) COXG PF06240.13 gi|330834767|ref|YP_004409495.1| - 0.0069 16.1 0.0 0.0077 16.0 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Glycos_transf_2 PF00535.26 gi|330834770|ref|YP_004409498.1| - 2.6e-20 72.9 0.0 3.8e-20 72.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330834770|ref|YP_004409498.1| - 0.00011 22.1 0.0 0.00021 21.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Tmemb_9 PF05434.11 gi|330834770|ref|YP_004409498.1| - 0.19 11.6 0.2 0.28 11.1 0.2 1.2 1 0 0 1 1 1 0 TMEM9 Glyco_trans_1_4 PF13692.6 gi|330834771|ref|YP_004409499.1| - 5.3e-13 49.6 0.0 9.1e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|330834771|ref|YP_004409499.1| - 4.8e-12 45.8 0.0 9.4e-12 44.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330834771|ref|YP_004409499.1| - 6e-07 29.8 0.0 3.4e-06 27.3 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330834771|ref|YP_004409499.1| - 1.1e-05 25.5 0.0 1.9e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_18 PF15024.6 gi|330834771|ref|YP_004409499.1| - 0.037 12.6 0.0 0.052 12.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 18 UreE_C PF05194.12 gi|330834773|ref|YP_004409501.1| - 0.0074 16.8 0.0 0.0099 16.4 0.0 1.3 1 0 0 1 1 1 1 UreE urease accessory protein, C-terminal domain UPF0086 PF01868.16 gi|330834773|ref|YP_004409501.1| - 0.025 14.5 0.1 0.033 14.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function UPF0086 UreD PF01774.17 gi|330834774|ref|YP_004409502.1| - 1.2e-08 35.1 0.0 1.3e-08 35.0 0.0 1.1 1 0 0 1 1 1 1 UreD urease accessory protein cobW PF02492.19 gi|330834775|ref|YP_004409503.1| - 7.1e-29 100.6 0.0 8.6e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MeaB PF03308.16 gi|330834775|ref|YP_004409503.1| - 3.2e-10 39.4 0.1 4.6e-10 38.9 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CbiA PF01656.23 gi|330834775|ref|YP_004409503.1| - 9.1e-05 22.5 0.0 0.00012 22.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.14 gi|330834775|ref|YP_004409503.1| - 0.00012 21.9 0.3 0.00023 21.0 0.3 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.15 gi|330834775|ref|YP_004409503.1| - 0.0003 20.8 0.1 0.00045 20.2 0.1 1.3 1 0 0 1 1 1 1 NTPase RsgA_GTPase PF03193.16 gi|330834775|ref|YP_004409503.1| - 0.00056 19.9 0.6 0.045 13.7 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase ATP_bind_1 PF03029.17 gi|330834775|ref|YP_004409503.1| - 0.0012 18.7 0.2 0.0039 17.0 0.1 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.27 gi|330834775|ref|YP_004409503.1| - 0.0014 18.2 0.2 1.2 8.7 0.0 2.4 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain SRP54 PF00448.22 gi|330834775|ref|YP_004409503.1| - 0.0015 18.2 0.1 0.0028 17.3 0.1 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain LpxK PF02606.14 gi|330834775|ref|YP_004409503.1| - 0.0018 17.4 0.2 0.0025 16.9 0.2 1.2 1 0 0 1 1 1 1 Tetraacyldisaccharide-1-P 4'-kinase AAA_18 PF13238.6 gi|330834775|ref|YP_004409503.1| - 0.0062 17.1 0.3 0.01 16.4 0.3 1.5 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|330834775|ref|YP_004409503.1| - 0.023 14.4 0.3 3.5 7.4 0.1 2.9 2 1 1 3 3 3 0 Ethanolamine utilisation - propanediol utilisation CLP1_P PF16575.5 gi|330834775|ref|YP_004409503.1| - 0.038 13.8 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_22 PF13401.6 gi|330834775|ref|YP_004409503.1| - 0.066 13.5 0.0 0.61 10.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain DUF3419 PF11899.8 gi|330834775|ref|YP_004409503.1| - 0.09 11.9 0.0 0.19 10.9 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3419) ParA PF10609.9 gi|330834775|ref|YP_004409503.1| - 0.095 12.1 0.3 0.15 11.5 0.3 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase PRK PF00485.18 gi|330834775|ref|YP_004409503.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.6 gi|330834775|ref|YP_004409503.1| - 0.15 12.5 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain UreF PF01730.16 gi|330834776|ref|YP_004409504.1| - 1.7e-13 51.3 0.0 2.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 UreF Amidohydro_1 PF01979.20 gi|330834778|ref|YP_004409506.1| - 5.6e-58 196.9 0.8 8.1e-58 196.4 0.8 1.2 1 0 0 1 1 1 1 Amidohydrolase family Urease_alpha PF00449.20 gi|330834778|ref|YP_004409506.1| - 1.3e-45 154.6 1.5 2.4e-45 153.8 1.5 1.5 1 0 0 1 1 1 1 Urease alpha-subunit, N-terminal domain Amidohydro_3 PF07969.11 gi|330834778|ref|YP_004409506.1| - 1.7e-09 37.7 0.3 0.0012 18.4 0.0 3.2 1 1 1 2 2 2 2 Amidohydrolase family Alg6_Alg8 PF03155.15 gi|330834778|ref|YP_004409506.1| - 0.25 10.2 0.0 0.36 9.7 0.0 1.1 1 0 0 1 1 1 0 ALG6, ALG8 glycosyltransferase family Urease_gamma PF00547.18 gi|330834779|ref|YP_004409507.1| - 7.4e-39 132.0 0.1 1.8e-38 130.9 0.1 1.6 2 0 0 2 2 2 1 Urease, gamma subunit Urease_beta PF00699.20 gi|330834779|ref|YP_004409507.1| - 1.6e-38 130.6 0.3 3.2e-38 129.7 0.1 1.7 2 0 0 2 2 2 1 Urease beta subunit CN_hydrolase PF00795.22 gi|330834781|ref|YP_004409509.1| - 9e-05 21.9 0.0 9e-05 21.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase Glycos_transf_2 PF00535.26 gi|330834782|ref|YP_004409510.1| - 9.4e-05 22.3 0.1 0.00014 21.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330834782|ref|YP_004409510.1| - 0.02 14.8 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 dTDP_sugar_isom PF00908.17 gi|330834783|ref|YP_004409511.1| - 9.7e-60 201.1 0.0 1.1e-59 200.9 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase ARD PF03079.14 gi|330834783|ref|YP_004409511.1| - 0.0053 17.0 0.0 0.0085 16.3 0.0 1.3 1 0 0 1 1 1 1 ARD/ARD' family Cupin_1 PF00190.22 gi|330834783|ref|YP_004409511.1| - 0.0087 15.7 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Cupin RmlD_sub_bind PF04321.17 gi|330834784|ref|YP_004409512.1| - 3.2e-69 233.2 0.0 4.2e-69 232.8 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|330834784|ref|YP_004409512.1| - 6.8e-22 78.1 0.0 1.2e-21 77.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|330834784|ref|YP_004409512.1| - 7.7e-10 38.4 3.2 3.8e-08 32.8 3.1 2.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|330834784|ref|YP_004409512.1| - 1.6e-06 27.5 1.7 9.3e-06 25.0 0.1 2.5 1 1 0 2 2 2 1 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|330834784|ref|YP_004409512.1| - 2.4e-06 27.2 0.1 5.7e-06 26.0 0.1 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|330834784|ref|YP_004409512.1| - 3e-06 26.5 1.3 1.1e-05 24.6 1.3 1.9 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NTP_transferase PF00483.23 gi|330834785|ref|YP_004409513.1| - 6.8e-49 166.7 0.0 8.6e-49 166.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|330834785|ref|YP_004409513.1| - 1.9e-09 37.1 0.7 1.9e-09 37.1 0.7 3.3 4 0 0 4 4 4 1 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|330834785|ref|YP_004409513.1| - 1.4e-08 35.3 0.0 1.9e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|330834785|ref|YP_004409513.1| - 2.2e-07 30.3 18.4 4.2e-07 29.4 1.0 4.5 3 1 3 6 6 6 4 Bacterial transferase hexapeptide (six repeats) ATPase_2 PF01637.18 gi|330834785|ref|YP_004409513.1| - 0.071 13.0 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Sep15_SelM PF08806.11 gi|330834785|ref|YP_004409513.1| - 0.076 13.2 0.2 13 6.1 0.0 2.6 2 0 0 2 2 2 0 Sep15/SelM redox domain GDP_Man_Dehyd PF16363.5 gi|330834786|ref|YP_004409514.1| - 3.5e-66 223.9 0.0 4.5e-66 223.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|330834786|ref|YP_004409514.1| - 1.8e-63 214.2 0.0 2.2e-63 213.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|330834786|ref|YP_004409514.1| - 4.2e-23 81.9 0.0 5.3e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|330834786|ref|YP_004409514.1| - 3.5e-20 72.2 0.0 5e-20 71.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|330834786|ref|YP_004409514.1| - 5e-14 52.1 1.4 1.3e-12 47.4 0.0 2.6 2 1 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|330834786|ref|YP_004409514.1| - 2.7e-12 46.4 1.9 1.1e-10 41.1 1.9 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|330834786|ref|YP_004409514.1| - 1.1e-06 28.7 0.0 1.4e-06 28.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|330834786|ref|YP_004409514.1| - 1.8e-05 24.5 0.2 0.0007 19.2 0.0 2.4 2 1 0 2 2 2 1 NmrA-like family DUF5442 PF17514.2 gi|330834786|ref|YP_004409514.1| - 0.11 12.7 0.1 0.23 11.7 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5442) Sacchrp_dh_NADP PF03435.18 gi|330834786|ref|YP_004409514.1| - 0.22 11.8 0.6 0.67 10.2 0.3 1.9 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Glycos_transf_2 PF00535.26 gi|330834787|ref|YP_004409515.1| - 0.0014 18.5 0.1 0.005 16.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 2 AA_kinase PF00696.28 gi|330834787|ref|YP_004409515.1| - 0.057 13.0 0.0 0.076 12.6 0.0 1.2 1 0 0 1 1 1 0 Amino acid kinase family Glycos_transf_2 PF00535.26 gi|330834788|ref|YP_004409516.1| - 2.6e-31 108.7 1.1 3.7e-31 108.2 1.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330834788|ref|YP_004409516.1| - 5e-17 62.6 0.0 7.9e-17 61.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|330834788|ref|YP_004409516.1| - 6.8e-09 35.6 0.2 7.7e-09 35.4 0.2 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|330834788|ref|YP_004409516.1| - 1.5e-05 25.4 0.2 3.2e-05 24.4 0.2 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_5 PF13712.6 gi|330834788|ref|YP_004409516.1| - 0.00021 21.0 0.3 0.0003 20.5 0.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family Glyco_trans_2_3 PF13632.6 gi|330834788|ref|YP_004409516.1| - 0.026 14.4 0.0 0.084 12.8 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|330834788|ref|YP_004409516.1| - 0.097 12.1 0.0 0.2 11.1 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase family 21 HEPN_Apea PF18739.1 gi|330834788|ref|YP_004409516.1| - 0.17 12.3 1.4 0.33 11.4 0.1 2.0 2 1 0 2 2 2 0 Apea-like HEPN Glyco_trans_1_4 PF13692.6 gi|330834789|ref|YP_004409517.1| - 2.5e-11 44.1 0.0 4.3e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|330834789|ref|YP_004409517.1| - 4e-10 39.5 0.0 1.3e-09 37.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330834789|ref|YP_004409517.1| - 0.018 15.4 0.0 0.06 13.8 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330834789|ref|YP_004409517.1| - 0.064 13.2 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Polysacc_synt PF01943.17 gi|330834793|ref|YP_004409521.1| - 5.5e-09 35.8 59.0 1.1e-06 28.2 31.9 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|330834793|ref|YP_004409521.1| - 7.5e-07 28.7 15.0 7.5e-07 28.7 15.0 2.9 1 1 2 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|330834793|ref|YP_004409521.1| - 9.8e-05 22.4 16.6 9.8e-05 22.4 16.6 4.1 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_21 PF05050.12 gi|330834794|ref|YP_004409522.1| - 3e-15 56.7 0.0 4.1e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_22 PF13383.6 gi|330834794|ref|YP_004409522.1| - 0.00082 19.0 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.7 gi|330834794|ref|YP_004409522.1| - 0.0024 17.8 0.0 0.13 12.2 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain UL16 PF17622.2 gi|330834794|ref|YP_004409522.1| - 0.0024 17.5 0.0 0.0043 16.7 0.0 1.3 1 0 0 1 1 1 1 Viral unique long protein 16 Met_10 PF02475.16 gi|330834794|ref|YP_004409522.1| - 0.0048 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|330834794|ref|YP_004409522.1| - 0.0083 15.6 0.0 0.013 14.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_15 PF09445.10 gi|330834794|ref|YP_004409522.1| - 0.031 13.9 0.2 0.25 10.9 0.0 2.1 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.6 gi|330834794|ref|YP_004409522.1| - 0.18 12.6 0.0 0.47 11.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Glycos_transf_2 PF00535.26 gi|330834795|ref|YP_004409523.1| - 5.5e-13 49.1 1.5 9.6e-13 48.3 1.5 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330834795|ref|YP_004409523.1| - 1.2e-06 28.6 0.0 1.6e-06 28.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 HSDR_N_2 PF13588.6 gi|330834798|ref|YP_004409526.1| - 0.00035 20.5 0.1 0.001 19.0 0.1 1.8 1 0 0 1 1 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) HSDR_N PF04313.14 gi|330834798|ref|YP_004409526.1| - 0.0017 18.3 2.2 0.1 12.5 0.2 3.3 3 1 0 3 3 3 1 Type I restriction enzyme R protein N terminus (HSDR_N) TPR_11 PF13414.6 gi|330834799|ref|YP_004409527.1| - 7.6e-52 172.7 69.2 1.7e-09 37.2 0.5 12.0 3 2 9 12 12 12 11 TPR repeat TPR_2 PF07719.17 gi|330834799|ref|YP_004409527.1| - 1.1e-49 162.5 64.0 7.6e-07 28.8 0.6 11.5 11 0 0 11 11 11 9 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330834799|ref|YP_004409527.1| - 5.8e-43 145.3 13.3 1.1e-07 32.3 0.0 6.6 4 2 1 6 6 6 6 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|330834799|ref|YP_004409527.1| - 1e-38 131.4 24.7 3.4e-09 36.8 2.0 6.4 2 2 4 6 6 6 6 Anaphase-promoting complex, cyclosome, subunit 3 TPR_1 PF00515.28 gi|330834799|ref|YP_004409527.1| - 3e-38 128.1 68.7 8.7e-06 25.4 1.4 12.1 11 1 1 12 12 12 9 Tetratricopeptide repeat TPR_14 PF13428.6 gi|330834799|ref|YP_004409527.1| - 5.6e-32 107.7 3.2 7.7e-05 23.2 0.0 10.3 3 3 8 11 11 11 6 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330834799|ref|YP_004409527.1| - 3.6e-31 104.7 56.0 9.8e-06 25.4 0.2 11.4 11 0 0 11 11 11 10 Tetratricopeptide repeat TPR_19 PF14559.6 gi|330834799|ref|YP_004409527.1| - 1.5e-26 92.7 17.3 0.00012 22.5 0.0 6.8 3 2 2 7 7 7 7 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330834799|ref|YP_004409527.1| - 1.6e-25 87.6 43.2 0.002 18.4 0.2 11.1 11 0 0 11 11 11 6 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330834799|ref|YP_004409527.1| - 1.2e-21 76.7 0.1 6.4e-05 23.0 0.0 6.4 3 2 3 7 7 7 6 Tetratricopeptide repeat TPR_20 PF14561.6 gi|330834799|ref|YP_004409527.1| - 9.4e-18 64.3 2.9 0.043 14.2 0.0 7.2 4 3 4 8 8 8 5 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330834799|ref|YP_004409527.1| - 8.2e-15 54.9 24.9 8.2e-05 22.8 0.1 7.9 4 3 5 9 9 9 5 Tetratricopeptide repeat NARP1 PF12569.8 gi|330834799|ref|YP_004409527.1| - 3.2e-13 49.4 24.2 0.0085 15.0 0.1 6.2 1 1 5 7 7 7 7 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|330834799|ref|YP_004409527.1| - 1.3e-09 38.1 33.9 0.0015 18.5 0.4 5.6 3 2 3 6 6 5 3 Putative TPR-like repeat BTAD PF03704.17 gi|330834799|ref|YP_004409527.1| - 4.9e-09 36.8 7.4 3.1 8.2 0.1 6.8 1 1 3 6 6 6 2 Bacterial transcriptional activator domain TPR_15 PF13429.6 gi|330834799|ref|YP_004409527.1| - 1.2e-08 34.5 5.5 0.032 13.4 0.0 4.4 2 2 1 3 3 3 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330834799|ref|YP_004409527.1| - 1.1e-07 32.0 29.9 0.44 11.3 0.0 9.5 10 0 0 10 10 9 1 Tetratricopeptide repeat HSDR_N_2 PF13588.6 gi|330834799|ref|YP_004409527.1| - 1.4e-06 28.2 0.7 3.3e-06 27.1 0.3 1.9 2 0 0 2 2 1 1 Type I restriction enzyme R protein N terminus (HSDR_N) TPR_10 PF13374.6 gi|330834799|ref|YP_004409527.1| - 4.6e-06 26.3 30.0 0.45 10.5 0.5 10.3 12 0 0 12 12 10 1 Tetratricopeptide repeat HSDR_N PF04313.14 gi|330834799|ref|YP_004409527.1| - 9.9e-06 25.6 9.7 0.00048 20.1 0.6 3.8 3 2 1 4 4 4 2 Type I restriction enzyme R protein N terminus (HSDR_N) Syntaxin-6_N PF09177.11 gi|330834799|ref|YP_004409527.1| - 5.5e-05 23.6 1.6 0.035 14.7 0.1 5.1 2 2 2 4 4 4 1 Syntaxin 6, N-terminal HrpB1_HrpK PF09613.10 gi|330834799|ref|YP_004409527.1| - 0.00037 20.1 0.0 2.4 7.8 0.0 3.9 3 1 2 5 5 5 1 Bacterial type III secretion protein (HrpB1_HrpK) TPR_21 PF09976.9 gi|330834799|ref|YP_004409527.1| - 0.00045 20.0 7.7 0.025 14.3 0.0 4.6 2 2 2 4 4 4 1 Tetratricopeptide repeat-like domain DUF3856 PF12968.7 gi|330834799|ref|YP_004409527.1| - 0.012 15.7 9.6 14 5.7 0.3 7.1 3 2 4 7 7 7 0 Domain of Unknown Function (DUF3856) PSDC PF12588.8 gi|330834799|ref|YP_004409527.1| - 0.039 13.9 0.2 11 6.0 0.0 3.4 2 1 1 3 3 3 0 Phophatidylserine decarboxylase PDDEXK_3 PF13366.6 gi|330834799|ref|YP_004409527.1| - 0.044 14.2 0.4 0.14 12.5 0.0 2.1 2 0 0 2 2 1 0 PD-(D/E)XK nuclease superfamily TPR_3 PF07720.12 gi|330834799|ref|YP_004409527.1| - 0.11 12.6 13.2 2.7 8.1 1.5 6.0 5 0 0 5 5 5 0 Tetratricopeptide repeat MEF2_binding PF09047.10 gi|330834799|ref|YP_004409527.1| - 0.18 11.7 0.3 0.41 10.5 0.3 1.6 1 0 0 1 1 1 0 MEF2 binding MIT PF04212.18 gi|330834799|ref|YP_004409527.1| - 0.32 11.1 21.4 20 5.3 0.9 7.8 9 0 0 9 9 6 0 MIT (microtubule interacting and transport) domain SHNi-TPR PF10516.9 gi|330834799|ref|YP_004409527.1| - 4.2 6.9 11.2 10 5.7 0.0 5.3 8 0 0 8 8 5 0 SHNi-TPR YvrJ PF12841.7 gi|330834799|ref|YP_004409527.1| - 8.7 6.0 14.9 3.5 7.2 0.6 4.7 5 0 0 5 5 5 0 YvrJ protein family Gin PF10764.9 gi|330834799|ref|YP_004409527.1| - 9.9 6.2 13.5 43 4.2 0.1 6.5 8 0 0 8 8 7 0 Inhibitor of sigma-G Gin partial_CstF PF15861.5 gi|330834800|ref|YP_004409528.1| - 0.11 12.3 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Partial cleavage stimulation factor domain Glycos_transf_2 PF00535.26 gi|330834801|ref|YP_004409529.1| - 1.6e-07 31.3 0.3 2.6e-07 30.6 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330834801|ref|YP_004409529.1| - 0.00032 20.7 0.0 0.0004 20.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Aldedh PF00171.22 gi|330834804|ref|YP_004409532.1| - 1.2e-109 367.0 0.0 1.3e-109 366.8 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|330834804|ref|YP_004409532.1| - 0.0011 18.1 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Phosphodiest PF01663.22 gi|330834805|ref|YP_004409533.1| - 2.8e-23 83.1 0.5 2.8e-12 46.9 0.0 2.6 1 1 1 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|330834805|ref|YP_004409533.1| - 2.1e-07 31.2 0.1 5.9e-05 23.2 0.0 2.4 2 1 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|330834805|ref|YP_004409533.1| - 0.00011 21.6 0.0 0.0011 18.4 0.0 2.0 2 0 0 2 2 2 1 Metalloenzyme superfamily Alk_phosphatase PF00245.20 gi|330834805|ref|YP_004409533.1| - 0.032 13.2 0.0 0.046 12.7 0.0 1.2 1 0 0 1 1 1 0 Alkaline phosphatase Sugar_tr PF00083.24 gi|330834806|ref|YP_004409534.1| - 2.8e-39 135.2 26.2 3.5e-37 128.3 26.2 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330834806|ref|YP_004409534.1| - 4.7e-24 85.0 53.5 1.8e-21 76.5 31.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Glycos_transf_2 PF00535.26 gi|330834807|ref|YP_004409535.1| - 2.2e-06 27.6 0.0 2.9e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 PfkB PF00294.24 gi|330834809|ref|YP_004409537.1| - 2.7e-42 145.1 0.0 3.1e-42 144.9 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DHDPS PF00701.22 gi|330834810|ref|YP_004409538.1| - 1e-39 136.0 0.0 1.2e-39 135.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ABC1 PF03109.16 gi|330834811|ref|YP_004409539.1| - 9.7e-25 87.0 0.0 2.2e-24 85.9 0.0 1.6 1 0 0 1 1 1 1 ABC1 family RIO1 PF01163.22 gi|330834811|ref|YP_004409539.1| - 3.8e-07 29.9 0.1 3.4e-05 23.5 0.0 2.9 3 0 0 3 3 3 1 RIO1 family Pkinase PF00069.25 gi|330834811|ref|YP_004409539.1| - 0.00012 21.6 0.0 0.00036 20.0 0.0 1.8 3 0 0 3 3 3 1 Protein kinase domain APH PF01636.23 gi|330834811|ref|YP_004409539.1| - 0.023 14.6 0.0 0.083 12.8 0.0 2.0 2 1 1 3 3 3 0 Phosphotransferase enzyme family Flg_hook PF02120.16 gi|330834811|ref|YP_004409539.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK HSP20 PF00011.21 gi|330834812|ref|YP_004409540.1| - 4.6e-11 42.8 0.0 5.9e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|330834812|ref|YP_004409540.1| - 3.6e-05 23.2 0.2 6.9e-05 22.3 0.2 1.5 1 1 0 1 1 1 1 HSP20-like domain found in ArsA MFS_1 PF07690.16 gi|330834813|ref|YP_004409541.1| - 5.3e-10 38.8 44.8 2.5e-09 36.6 14.3 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330834813|ref|YP_004409541.1| - 2.8e-06 26.5 21.3 5.1e-06 25.6 7.4 2.3 2 0 0 2 2 2 2 Sugar (and other) transporter SGL PF08450.12 gi|330834814|ref|YP_004409542.1| - 9.5e-58 195.7 0.0 1.1e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Reg_prop PF07494.11 gi|330834814|ref|YP_004409542.1| - 0.0031 17.5 0.1 6.9 7.3 0.0 3.0 2 0 0 2 2 2 2 Two component regulator propeller AMP-binding PF00501.28 gi|330834815|ref|YP_004409543.1| - 9.6e-67 225.4 0.0 1.3e-66 225.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330834815|ref|YP_004409543.1| - 1.3e-16 61.3 0.8 3.3e-16 60.0 0.8 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330834815|ref|YP_004409543.1| - 5.3e-09 35.9 1.8 1.1e-08 34.8 1.8 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF35_N PF12172.8 gi|330834816|ref|YP_004409544.1| - 0.00014 21.6 0.7 0.00023 20.9 0.7 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.14 gi|330834816|ref|YP_004409544.1| - 0.27 11.3 3.8 2 8.5 3.8 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Thiolase_N PF00108.23 gi|330834817|ref|YP_004409545.1| - 2e-24 86.4 0.0 3.9e-24 85.4 0.0 1.5 1 0 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|330834817|ref|YP_004409545.1| - 1.1e-06 28.4 0.9 0.00024 20.9 0.1 3.1 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_C PF02803.18 gi|330834817|ref|YP_004409545.1| - 0.0035 17.0 0.2 0.0071 16.0 0.2 1.5 1 0 0 1 1 1 1 Thiolase, C-terminal domain SBP_bac_1 PF01547.25 gi|330834818|ref|YP_004409546.1| - 2.9e-24 86.6 0.1 4.3e-24 86.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|330834818|ref|YP_004409546.1| - 3.9e-17 63.0 0.0 6.9e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|330834818|ref|YP_004409546.1| - 0.0021 17.8 0.0 2.1 8.0 0.0 2.6 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|330834818|ref|YP_004409546.1| - 0.0044 16.5 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|330834819|ref|YP_004409547.1| - 4.7e-15 55.8 18.2 4.7e-15 55.8 18.2 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component TssN PF17555.2 gi|330834819|ref|YP_004409547.1| - 8.9 5.6 7.8 0.35 10.2 1.4 1.9 2 0 0 2 2 2 0 Type VI secretion system, TssN BPD_transp_1 PF00528.22 gi|330834820|ref|YP_004409548.1| - 4.6e-18 65.6 19.4 4.6e-18 65.6 19.4 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|330834821|ref|YP_004409549.1| - 2.3e-33 115.6 0.0 3.6e-33 115.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330834821|ref|YP_004409549.1| - 0.00018 21.5 0.0 0.33 10.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330834821|ref|YP_004409549.1| - 0.001 18.6 0.1 0.0092 15.4 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|330834821|ref|YP_004409549.1| - 0.019 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|330834821|ref|YP_004409549.1| - 0.033 14.7 0.2 0.083 13.4 0.1 1.7 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|330834821|ref|YP_004409549.1| - 0.037 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|330834821|ref|YP_004409549.1| - 0.054 13.9 0.0 0.2 12.0 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|330834821|ref|YP_004409549.1| - 0.16 11.7 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain S1 PF00575.23 gi|330834821|ref|YP_004409549.1| - 0.29 11.5 4.2 2.4 8.6 0.2 3.3 3 0 0 3 3 3 0 S1 RNA binding domain DLH PF01738.18 gi|330834822|ref|YP_004409550.1| - 1e-54 185.4 0.0 2e-54 184.4 0.0 1.4 1 1 0 1 1 1 1 Dienelactone hydrolase family BAAT_C PF08840.11 gi|330834822|ref|YP_004409550.1| - 0.014 15.3 0.8 0.14 12.1 0.1 2.4 1 1 2 3 3 3 0 BAAT / Acyl-CoA thioester hydrolase C terminal Hydrolase_4 PF12146.8 gi|330834822|ref|YP_004409550.1| - 0.022 14.0 0.0 0.07 12.4 0.0 1.8 2 0 0 2 2 2 0 Serine aminopeptidase, S33 Abhydrolase_5 PF12695.7 gi|330834822|ref|YP_004409550.1| - 0.056 13.2 0.0 0.13 12.0 0.0 1.7 2 1 0 2 2 2 0 Alpha/beta hydrolase family DUF1819 PF08849.11 gi|330834822|ref|YP_004409550.1| - 0.12 12.1 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Putative inner membrane protein (DUF1819) TrmB PF01978.19 gi|330834822|ref|YP_004409550.1| - 0.15 12.0 0.1 0.36 10.8 0.1 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Radical_SAM PF04055.21 gi|330834823|ref|YP_004409551.1| - 7.6e-16 58.9 0.0 1.6e-14 54.6 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily 2-Hacid_dh_C PF02826.19 gi|330834826|ref|YP_004409554.1| - 6.4e-33 113.6 0.0 8.7e-33 113.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|330834826|ref|YP_004409554.1| - 1e-14 54.3 0.0 1.2e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|330834826|ref|YP_004409554.1| - 0.0019 18.4 0.0 0.0033 17.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|330834826|ref|YP_004409554.1| - 0.0031 17.6 0.0 0.017 15.2 0.0 2.0 1 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase AdoHcyase_NAD PF00670.21 gi|330834826|ref|YP_004409554.1| - 0.009 16.1 0.0 0.023 14.8 0.0 1.6 1 1 1 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ThiF PF00899.21 gi|330834826|ref|YP_004409554.1| - 0.023 14.1 0.1 0.061 12.7 0.0 1.8 2 0 0 2 2 2 0 ThiF family HD_3 PF13023.6 gi|330834826|ref|YP_004409554.1| - 0.04 13.8 0.1 11 5.9 0.0 2.5 2 0 0 2 2 2 0 HD domain DUF1163 PF06651.11 gi|330834826|ref|YP_004409554.1| - 0.052 13.6 0.1 0.1 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1163) Sacchrp_dh_NADP PF03435.18 gi|330834826|ref|YP_004409554.1| - 0.13 12.6 0.3 0.64 10.3 0.3 2.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain PDH PF02153.17 gi|330834826|ref|YP_004409554.1| - 0.13 11.2 0.0 0.42 9.6 0.0 1.8 2 0 0 2 2 2 0 Prephenate dehydrogenase Amdase PF17645.1 gi|330834828|ref|YP_004409556.1| - 1.7e-12 47.4 0.0 2.3e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Arylmalonate decarboxylase MFS_1 PF07690.16 gi|330834830|ref|YP_004409558.1| - 1.5e-37 129.4 51.2 1.5e-37 129.4 51.2 3.4 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330834830|ref|YP_004409558.1| - 4.2e-07 29.2 7.1 4.2e-07 29.2 7.1 3.2 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|330834830|ref|YP_004409558.1| - 0.0032 15.9 2.5 0.0032 15.9 2.5 1.9 2 0 0 2 2 2 1 Transmembrane secretion effector GWT1 PF06423.12 gi|330834830|ref|YP_004409558.1| - 0.11 12.6 7.1 0.42 10.7 1.5 2.7 3 0 0 3 3 3 0 GWT1 OATP PF03137.20 gi|330834830|ref|YP_004409558.1| - 1.6 6.9 21.8 0.76 8.0 2.4 3.3 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MarR_2 PF12802.7 gi|330834831|ref|YP_004409559.1| - 4.1e-11 42.6 0.0 7.4e-11 41.8 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|330834831|ref|YP_004409559.1| - 7.1e-11 41.9 0.7 2.1e-10 40.4 0.1 2.1 2 1 0 2 2 2 1 MarR family HTH_27 PF13463.6 gi|330834831|ref|YP_004409559.1| - 1.3e-09 38.4 1.6 5e-09 36.5 0.1 2.4 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|330834831|ref|YP_004409559.1| - 3.3e-05 24.0 0.5 6.5e-05 23.0 0.1 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|330834831|ref|YP_004409559.1| - 0.00088 18.8 0.3 0.0022 17.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.16 gi|330834831|ref|YP_004409559.1| - 0.0037 17.6 1.5 0.012 15.9 1.1 2.0 2 1 0 2 2 2 1 Penicillinase repressor TrmB PF01978.19 gi|330834831|ref|YP_004409559.1| - 0.023 14.6 0.9 0.082 12.8 0.1 2.3 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|330834831|ref|YP_004409559.1| - 0.025 14.4 0.1 0.044 13.6 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Peptidase_A25 PF03418.14 gi|330834831|ref|YP_004409559.1| - 0.027 13.4 1.6 0.034 13.1 1.6 1.1 1 0 0 1 1 1 0 Germination protease DUF4250 PF14056.6 gi|330834831|ref|YP_004409559.1| - 0.037 14.0 0.7 0.88 9.6 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) DUF4423 PF14394.6 gi|330834831|ref|YP_004409559.1| - 0.044 13.5 0.6 0.084 12.6 0.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) GntR PF00392.21 gi|330834831|ref|YP_004409559.1| - 0.083 12.6 0.4 0.27 10.9 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family PadR PF03551.14 gi|330834831|ref|YP_004409559.1| - 0.1 12.6 0.1 0.28 11.2 0.1 1.9 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Glyco_hydro_15 PF00723.21 gi|330834832|ref|YP_004409560.1| - 5e-18 65.1 0.0 3.2e-12 46.0 0.1 3.9 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 MBOAT_2 PF13813.6 gi|330834832|ref|YP_004409560.1| - 0.04 14.2 0.1 0.085 13.1 0.1 1.6 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family Neur_chan_memb PF02932.16 gi|330834833|ref|YP_004409561.1| - 0.96 9.5 4.9 9.8 6.1 0.5 2.4 2 0 0 2 2 2 0 Neurotransmitter-gated ion-channel transmembrane region Fer4_7 PF12838.7 gi|330834834|ref|YP_004409562.1| - 4.4e-05 24.0 9.3 0.0088 16.6 1.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330834834|ref|YP_004409562.1| - 0.00022 21.3 10.2 0.00022 21.3 10.2 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834834|ref|YP_004409562.1| - 0.0038 17.3 14.1 0.011 15.8 2.8 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330834834|ref|YP_004409562.1| - 0.0039 16.9 2.1 0.0039 16.9 2.1 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330834834|ref|YP_004409562.1| - 0.0043 17.2 5.2 0.0096 16.1 5.2 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330834834|ref|YP_004409562.1| - 0.0056 16.7 3.2 0.0056 16.7 3.2 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330834834|ref|YP_004409562.1| - 0.0064 17.4 9.2 0.019 15.9 0.8 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.6 gi|330834834|ref|YP_004409562.1| - 0.0098 15.6 10.6 0.27 11.0 2.8 2.3 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|330834834|ref|YP_004409562.1| - 0.011 16.2 14.7 0.037 14.5 4.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330834834|ref|YP_004409562.1| - 0.013 16.0 7.3 0.21 12.1 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330834834|ref|YP_004409562.1| - 0.042 14.3 11.1 0.72 10.3 1.0 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain T_cell_tran_alt PF15128.6 gi|330834834|ref|YP_004409562.1| - 0.047 13.5 0.2 0.11 12.3 0.1 1.7 1 1 0 1 1 1 0 T-cell leukemia translocation-altered Fer4_11 PF13247.6 gi|330834834|ref|YP_004409562.1| - 0.056 13.6 5.8 0.1 12.7 5.8 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_5 PF12801.7 gi|330834834|ref|YP_004409562.1| - 0.06 13.3 1.4 0.06 13.3 1.4 3.8 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330834834|ref|YP_004409562.1| - 0.16 12.1 13.7 0.064 13.4 3.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330834834|ref|YP_004409562.1| - 2.4 8.4 13.7 27 5.0 14.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330834834|ref|YP_004409562.1| - 5.1 8.3 19.6 0.92 10.6 4.0 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain ERM PF00769.19 gi|330834835|ref|YP_004409563.1| - 1e-05 25.5 29.2 1e-05 25.5 29.2 1.6 1 1 0 1 1 1 1 Ezrin/radixin/moesin family AAA_13 PF13166.6 gi|330834835|ref|YP_004409563.1| - 3.1e-05 22.8 27.9 4.5e-05 22.3 27.9 1.1 1 0 0 1 1 1 1 AAA domain Fib_alpha PF08702.10 gi|330834835|ref|YP_004409563.1| - 0.00022 21.4 32.1 0.022 14.9 15.6 3.5 2 1 2 4 4 3 2 Fibrinogen alpha/beta chain family DUF883 PF05957.13 gi|330834835|ref|YP_004409563.1| - 0.00069 20.2 13.2 0.021 15.4 0.5 3.6 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF883) Spc7 PF08317.11 gi|330834835|ref|YP_004409563.1| - 0.0011 17.9 36.2 0.0018 17.2 19.4 2.7 2 1 1 3 3 2 2 Spc7 kinetochore protein HMMR_N PF15905.5 gi|330834835|ref|YP_004409563.1| - 0.0013 18.3 27.9 0.0013 18.3 27.9 1.6 2 0 0 2 2 1 1 Hyaluronan mediated motility receptor N-terminal SlyX PF04102.12 gi|330834835|ref|YP_004409563.1| - 0.0013 19.3 28.9 0.031 14.9 10.9 3.7 2 1 2 4 4 3 2 SlyX DUF16 PF01519.16 gi|330834835|ref|YP_004409563.1| - 0.0015 19.0 33.2 0.0035 17.8 10.2 3.8 2 1 2 4 4 3 2 Protein of unknown function DUF16 Bacillus_HBL PF05791.11 gi|330834835|ref|YP_004409563.1| - 0.0019 18.1 25.9 0.026 14.3 16.0 2.3 1 1 1 2 2 2 1 Bacillus haemolytic enterotoxin (HBL) DUF812 PF05667.11 gi|330834835|ref|YP_004409563.1| - 0.0025 16.8 28.8 0.0037 16.2 28.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Corona_S2 PF01601.16 gi|330834835|ref|YP_004409563.1| - 0.0036 15.9 11.5 0.013 14.1 1.5 2.4 1 1 2 3 3 3 2 Coronavirus S2 glycoprotein Lebercilin PF15619.6 gi|330834835|ref|YP_004409563.1| - 0.0045 16.7 26.5 0.0094 15.6 26.5 1.6 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease DUF3584 PF12128.8 gi|330834835|ref|YP_004409563.1| - 0.0051 14.4 23.5 0.0065 14.1 23.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) EzrA PF06160.12 gi|330834835|ref|YP_004409563.1| - 0.0054 15.0 32.6 0.025 12.8 10.3 2.7 1 1 2 3 3 3 1 Septation ring formation regulator, EzrA TPR_MLP1_2 PF07926.12 gi|330834835|ref|YP_004409563.1| - 0.0071 16.4 34.2 0.07 13.2 23.8 2.8 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.8 gi|330834835|ref|YP_004409563.1| - 0.0081 16.1 10.7 0.0081 16.1 10.7 4.6 3 1 2 5 5 4 2 TATA element modulatory factor 1 DNA binding HOOK PF05622.12 gi|330834835|ref|YP_004409563.1| - 0.011 13.9 29.1 0.016 13.4 28.7 1.5 1 1 0 1 1 1 0 HOOK protein TMPIT PF07851.13 gi|330834835|ref|YP_004409563.1| - 0.011 15.0 23.2 0.16 11.2 9.4 2.3 1 1 1 2 2 2 0 TMPIT-like protein DHR10 PF18595.1 gi|330834835|ref|YP_004409563.1| - 0.016 15.3 36.1 0.2 11.7 18.1 3.3 2 1 1 3 3 2 0 Designed helical repeat protein 10 domain WEMBL PF05701.11 gi|330834835|ref|YP_004409563.1| - 0.017 13.9 24.9 0.024 13.3 24.9 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light CorA PF01544.18 gi|330834835|ref|YP_004409563.1| - 0.026 13.8 20.8 0.083 12.2 17.0 2.6 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Baculo_PEP_C PF04513.12 gi|330834835|ref|YP_004409563.1| - 0.027 14.5 21.3 0.15 12.1 5.3 3.2 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FAM184 PF15665.5 gi|330834835|ref|YP_004409563.1| - 0.027 14.2 28.7 0.18 11.6 15.8 2.5 1 1 1 2 2 2 0 Family with sequence similarity 184, A and B BRE1 PF08647.11 gi|330834835|ref|YP_004409563.1| - 0.029 14.5 32.9 0.98 9.5 17.0 4.3 1 1 3 4 4 4 0 BRE1 E3 ubiquitin ligase Filament PF00038.21 gi|330834835|ref|YP_004409563.1| - 0.036 13.7 29.7 0.059 13.0 29.7 1.3 1 0 0 1 1 1 0 Intermediate filament protein IFT57 PF10498.9 gi|330834835|ref|YP_004409563.1| - 0.04 12.9 29.2 0.27 10.2 19.1 2.2 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Tektin PF03148.14 gi|330834835|ref|YP_004409563.1| - 0.04 12.7 27.9 0.075 11.8 19.9 2.8 1 1 1 2 2 2 0 Tektin family Fez1 PF06818.15 gi|330834835|ref|YP_004409563.1| - 0.054 13.9 29.5 0.19 12.2 22.1 2.8 1 1 2 3 3 3 0 Fez1 COG5 PF10392.9 gi|330834835|ref|YP_004409563.1| - 0.083 13.1 16.8 0.44 10.7 5.1 2.8 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Seryl_tRNA_N PF02403.22 gi|330834835|ref|YP_004409563.1| - 0.085 13.1 31.4 0.056 13.7 9.4 3.3 2 1 1 3 3 2 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.9 gi|330834835|ref|YP_004409563.1| - 0.1 12.9 28.7 0.55 10.6 8.8 3.5 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CEP63 PF17045.5 gi|330834835|ref|YP_004409563.1| - 0.1 12.5 28.4 2.2 8.1 14.3 2.3 1 1 1 2 2 2 0 Centrosomal protein of 63 kDa CCDC84 PF14968.6 gi|330834835|ref|YP_004409563.1| - 0.11 12.2 11.8 0.15 11.7 11.8 1.3 1 0 0 1 1 1 0 Coiled coil protein 84 PC_rep PF01851.22 gi|330834835|ref|YP_004409563.1| - 0.12 12.9 0.2 1.1e+02 3.5 0.0 4.2 5 0 0 5 5 2 0 Proteasome/cyclosome repeat UPF0242 PF06785.11 gi|330834835|ref|YP_004409563.1| - 0.13 12.4 35.3 0.16 12.0 18.4 2.4 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF4763 PF15960.5 gi|330834835|ref|YP_004409563.1| - 0.13 11.6 21.4 0.58 9.4 12.0 3.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) DUF4407 PF14362.6 gi|330834835|ref|YP_004409563.1| - 0.13 11.6 20.6 0.45 9.8 20.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|330834835|ref|YP_004409563.1| - 0.14 12.4 30.3 1.2 9.5 6.6 3.8 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) Noelin-1 PF12308.8 gi|330834835|ref|YP_004409563.1| - 0.16 12.0 17.7 0.68 10.0 1.8 3.4 1 1 3 4 4 4 0 Neurogenesis glycoprotein HrpB7 PF09486.10 gi|330834835|ref|YP_004409563.1| - 0.19 12.1 21.3 3 8.2 8.9 2.5 1 1 1 2 2 2 0 Bacterial type III secretion protein (HrpB7) APG17 PF04108.12 gi|330834835|ref|YP_004409563.1| - 0.21 10.7 24.1 0.78 8.8 3.9 2.9 1 1 1 2 2 2 0 Autophagy protein Apg17 Phasin_2 PF09361.10 gi|330834835|ref|YP_004409563.1| - 0.22 11.8 13.4 4.1 7.7 2.4 3.7 1 1 1 3 3 2 0 Phasin protein Prominin PF05478.11 gi|330834835|ref|YP_004409563.1| - 0.22 9.4 22.7 1.6 6.6 22.8 2.0 1 1 0 1 1 1 0 Prominin DUF4795 PF16043.5 gi|330834835|ref|YP_004409563.1| - 0.25 10.9 33.8 0.058 13.0 19.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) SpecificRecomb PF10136.9 gi|330834835|ref|YP_004409563.1| - 0.29 9.4 8.2 0.44 8.8 8.2 1.3 1 0 0 1 1 1 0 Site-specific recombinase DUF3450 PF11932.8 gi|330834835|ref|YP_004409563.1| - 0.33 10.2 28.0 0.35 10.1 8.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) PspA_IM30 PF04012.12 gi|330834835|ref|YP_004409563.1| - 0.34 10.5 25.4 1.3 8.5 25.2 2.0 1 1 0 1 1 1 0 PspA/IM30 family TolA_bind_tri PF16331.5 gi|330834835|ref|YP_004409563.1| - 0.35 11.0 23.8 0.11 12.6 6.1 3.2 1 1 2 3 3 3 0 TolA binding protein trimerisation DUF948 PF06103.11 gi|330834835|ref|YP_004409563.1| - 0.47 10.8 21.5 0.21 11.9 0.9 3.5 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) TIR-like PF10137.9 gi|330834835|ref|YP_004409563.1| - 0.58 10.1 7.7 1.6 8.7 2.1 2.9 1 1 1 2 2 2 0 Predicted nucleotide-binding protein containing TIR-like domain NPV_P10 PF05531.12 gi|330834835|ref|YP_004409563.1| - 0.65 10.5 25.5 2.8 8.4 0.7 4.6 2 1 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Mod_r PF07200.13 gi|330834835|ref|YP_004409563.1| - 0.66 10.1 31.6 9.7 6.3 11.6 2.8 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein DUF1664 PF07889.12 gi|330834835|ref|YP_004409563.1| - 0.68 10.0 25.0 0.3 11.1 6.4 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Fusion_gly PF00523.18 gi|330834835|ref|YP_004409563.1| - 0.73 8.0 14.8 0.3 9.3 3.2 2.8 1 1 2 3 3 3 0 Fusion glycoprotein F0 Spectrin PF00435.21 gi|330834835|ref|YP_004409563.1| - 0.78 10.2 23.4 3.4 8.2 6.5 2.7 1 1 1 2 2 2 0 Spectrin repeat DUF4618 PF15397.6 gi|330834835|ref|YP_004409563.1| - 0.83 9.0 28.3 5.3 6.4 4.6 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) FUSC PF04632.12 gi|330834835|ref|YP_004409563.1| - 0.88 8.0 2.0 1.1 7.7 2.0 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family APC_rep PF18797.1 gi|330834835|ref|YP_004409563.1| - 0.93 10.5 9.5 7.8 7.5 2.4 3.3 1 1 2 3 3 3 0 Adenomatous polyposis coli (APC) repeat RmuC PF02646.16 gi|330834835|ref|YP_004409563.1| - 1.1 8.3 22.2 2.8 7.0 0.7 3.2 1 1 3 4 4 4 0 RmuC family GST_N_4 PF17172.4 gi|330834835|ref|YP_004409563.1| - 1.1 10.0 4.4 3.9 8.3 0.5 2.6 1 1 3 4 4 4 0 Glutathione S-transferase N-terminal domain Exonuc_VII_L PF02601.15 gi|330834835|ref|YP_004409563.1| - 1.3 8.6 23.3 11 5.5 23.2 2.0 1 1 0 1 1 1 0 Exonuclease VII, large subunit ZapB PF06005.12 gi|330834835|ref|YP_004409563.1| - 1.3 9.6 37.9 4 8.0 15.7 4.4 2 1 2 4 4 2 0 Cell division protein ZapB DUF148 PF02520.17 gi|330834835|ref|YP_004409563.1| - 1.3 9.2 30.0 6.1 7.0 10.3 3.3 1 1 2 3 3 3 0 Domain of unknown function DUF148 HemX PF04375.14 gi|330834835|ref|YP_004409563.1| - 1.3 8.2 25.1 2.4 7.4 11.1 2.4 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4279 PF14106.6 gi|330834835|ref|YP_004409563.1| - 1.3 9.3 13.2 6.6 7.0 1.5 4.5 2 1 2 4 4 4 0 Domain of unknown function (DUF4279) MCPsignal PF00015.21 gi|330834835|ref|YP_004409563.1| - 1.3 8.8 20.1 1 9.1 3.4 2.7 2 1 1 3 3 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain AATF-Che1 PF13339.6 gi|330834835|ref|YP_004409563.1| - 1.4 9.6 18.7 1e+03 0.3 18.5 2.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF3552 PF12072.8 gi|330834835|ref|YP_004409563.1| - 1.5 8.2 31.7 6.2 6.2 30.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF641 PF04859.12 gi|330834835|ref|YP_004409563.1| - 1.6 9.1 22.2 2 8.7 9.9 2.8 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) GBP_C PF02841.14 gi|330834835|ref|YP_004409563.1| - 1.6 8.1 26.4 3.4 7.0 26.4 1.6 1 1 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Atg14 PF10186.9 gi|330834835|ref|YP_004409563.1| - 1.6 7.7 24.0 4.4 6.3 23.8 1.7 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 NCD2 PF04905.13 gi|330834835|ref|YP_004409563.1| - 1.7 8.6 16.0 1.1 9.2 3.3 3.0 2 1 2 4 4 2 0 NAB conserved region 2 (NCD2) HAP1_N PF04849.13 gi|330834835|ref|YP_004409563.1| - 1.7 7.7 31.9 9.7 5.3 31.8 2.0 1 1 0 1 1 1 0 HAP1 N-terminal conserved region COG2 PF06148.11 gi|330834835|ref|YP_004409563.1| - 1.8 8.6 21.2 11 6.1 8.2 3.6 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_7 PF13176.6 gi|330834835|ref|YP_004409563.1| - 2.1 8.6 4.4 19 5.6 0.0 3.8 2 1 1 3 3 2 0 Tetratricopeptide repeat YkyA PF10368.9 gi|330834835|ref|YP_004409563.1| - 2.2 7.9 35.0 2.4 7.8 6.8 2.7 1 1 2 3 3 3 0 Putative cell-wall binding lipoprotein KxDL PF10241.9 gi|330834835|ref|YP_004409563.1| - 2.2 8.6 26.7 1.9 8.8 7.9 4.1 2 1 3 5 5 4 0 Uncharacterized conserved protein Sec34 PF04136.15 gi|330834835|ref|YP_004409563.1| - 2.2 8.1 24.9 1.8 8.4 7.4 3.3 1 1 2 3 3 3 0 Sec34-like family Z1 PF10593.9 gi|330834835|ref|YP_004409563.1| - 2.3 7.7 20.1 1.1 8.7 9.8 2.2 1 1 1 2 2 2 0 Z1 domain SseC PF04888.12 gi|330834835|ref|YP_004409563.1| - 2.4 7.7 17.9 80 2.7 17.9 2.9 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family Leu_zip PF15294.6 gi|330834835|ref|YP_004409563.1| - 2.4 7.6 31.9 0.52 9.8 12.0 2.2 2 1 1 3 3 2 0 Leucine zipper DUF4200 PF13863.6 gi|330834835|ref|YP_004409563.1| - 2.5 8.5 39.1 0.87 10.0 22.3 2.9 2 1 1 3 3 2 0 Domain of unknown function (DUF4200) ATG16 PF08614.11 gi|330834835|ref|YP_004409563.1| - 2.6 8.2 28.4 9 6.5 27.1 2.6 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) ISG65-75 PF11727.8 gi|330834835|ref|YP_004409563.1| - 2.9 7.0 21.1 1.7 7.8 5.1 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein DUF1759 PF03564.15 gi|330834835|ref|YP_004409563.1| - 3.3 7.6 15.4 1.8 8.5 5.8 3.0 2 1 1 3 3 2 0 Protein of unknown function (DUF1759) TraF_2 PF13729.6 gi|330834835|ref|YP_004409563.1| - 3.6 6.9 7.4 10 5.4 0.1 2.5 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Fmp27_WPPW PF10359.9 gi|330834835|ref|YP_004409563.1| - 3.7 6.3 25.2 0.49 9.2 4.7 2.3 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain PRANC PF09372.10 gi|330834835|ref|YP_004409563.1| - 3.8 7.9 8.5 0.44 10.9 1.9 2.8 2 1 0 3 3 1 0 PRANC domain GrpE PF01025.19 gi|330834835|ref|YP_004409563.1| - 4 7.1 29.1 3.8 7.1 8.1 3.5 1 1 2 3 3 3 0 GrpE Phage_GPO PF05929.11 gi|330834835|ref|YP_004409563.1| - 4.1 7.0 21.8 13 5.3 12.1 2.3 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase MbeD_MobD PF04899.12 gi|330834835|ref|YP_004409563.1| - 4.2 7.6 13.1 34 4.6 1.9 3.7 1 1 2 3 3 3 0 MbeD/MobD like DUF3138 PF11336.8 gi|330834835|ref|YP_004409563.1| - 4.5 5.8 4.4 6.1 5.3 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) Acyl-CoA_dh_2 PF08028.11 gi|330834835|ref|YP_004409563.1| - 4.6 7.5 7.3 6.9 6.9 2.5 2.2 1 1 1 2 2 2 0 Acyl-CoA dehydrogenase, C-terminal domain HAUS-augmin3 PF14932.6 gi|330834835|ref|YP_004409563.1| - 4.6 6.7 25.3 12 5.4 17.5 2.2 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 Rootletin PF15035.6 gi|330834835|ref|YP_004409563.1| - 4.9 7.1 24.8 21 5.1 24.3 2.0 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Glyco_hydro_4C PF11975.8 gi|330834835|ref|YP_004409563.1| - 4.9 7.2 15.8 2.2e+02 1.7 15.8 2.2 1 1 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain KELK PF15796.5 gi|330834835|ref|YP_004409563.1| - 5.9 7.4 31.4 0.85 10.1 11.2 4.0 2 1 0 3 3 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Jnk-SapK_ap_N PF09744.9 gi|330834835|ref|YP_004409563.1| - 6.2 7.0 31.8 26 5.0 17.6 2.6 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Laminin_II PF06009.12 gi|330834835|ref|YP_004409563.1| - 6.3 6.8 28.1 0.26 11.3 11.7 3.0 2 1 2 4 4 3 0 Laminin Domain II ADIP PF11559.8 gi|330834835|ref|YP_004409563.1| - 6.3 6.9 34.1 8 6.5 18.6 3.1 2 1 2 4 4 3 0 Afadin- and alpha -actinin-Binding DUF724 PF05266.14 gi|330834835|ref|YP_004409563.1| - 6.6 6.5 31.1 1.7 8.4 15.5 2.8 2 1 1 3 3 2 0 Protein of unknown function (DUF724) DUF4446 PF14584.6 gi|330834835|ref|YP_004409563.1| - 7.2 6.6 24.1 2.9 7.9 4.8 3.6 2 1 2 4 4 3 0 Protein of unknown function (DUF4446) ApoO PF09769.9 gi|330834835|ref|YP_004409563.1| - 8.1 6.4 9.1 1.8e+03 -1.1 9.1 3.1 1 1 0 1 1 0 0 Apolipoprotein O Herpes_UL25 PF01499.16 gi|330834835|ref|YP_004409563.1| - 8.3 4.8 14.2 1.4 7.4 6.8 2.1 1 1 1 2 2 2 0 Herpesvirus UL25 family Spc29 PF17082.5 gi|330834835|ref|YP_004409563.1| - 8.4 6.2 17.7 7.9 6.2 3.3 2.8 1 1 2 3 3 3 0 Spindle Pole Component 29 Sec20 PF03908.13 gi|330834835|ref|YP_004409563.1| - 8.4 6.4 18.3 5.1 7.1 1.2 4.2 1 1 3 4 4 4 0 Sec20 T3SSipB PF16535.5 gi|330834835|ref|YP_004409563.1| - 8.9 6.8 15.2 27 5.2 4.2 2.4 1 1 1 2 2 2 0 Type III cell invasion protein SipB FlgN PF05130.12 gi|330834835|ref|YP_004409563.1| - 9.1 6.8 25.7 1.3e+02 3.0 25.1 2.5 1 1 0 1 1 1 0 FlgN protein MFS_1 PF07690.16 gi|330834836|ref|YP_004409564.1| - 5.4e-29 101.2 72.6 8.2e-25 87.5 40.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF302 PF03625.14 gi|330834838|ref|YP_004409566.1| - 6.4e-20 70.8 0.0 9.4e-20 70.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 NAC PF01849.18 gi|330834838|ref|YP_004409566.1| - 0.12 12.3 0.1 0.23 11.4 0.1 1.6 1 0 0 1 1 1 0 NAC domain SLAC1 PF03595.17 gi|330834839|ref|YP_004409567.1| - 1.9e-41 142.4 38.0 2.2e-41 142.2 38.0 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Ald_Xan_dh_C2 PF02738.18 gi|330834840|ref|YP_004409568.1| - 2.2e-112 376.3 0.0 3.2e-110 369.2 0.0 2.0 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330834840|ref|YP_004409568.1| - 2.5e-10 40.7 0.0 9e-10 38.9 0.0 2.0 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AA_permease_2 PF13520.6 gi|330834841|ref|YP_004409569.1| - 2.3e-15 56.4 50.6 2.3e-15 56.4 50.6 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330834841|ref|YP_004409569.1| - 0.16 10.5 50.8 0.038 12.6 47.2 1.7 1 1 0 1 1 1 0 Amino acid permease Orthopox_F8 PF05886.11 gi|330834842|ref|YP_004409570.1| - 0.092 12.9 0.1 0.1 12.7 0.1 1.2 1 0 0 1 1 1 0 Orthopoxvirus F8 protein NAD_kinase PF01513.21 gi|330834843|ref|YP_004409571.1| - 5.9e-29 101.2 0.0 8e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ATP-NAD kinase HTH_24 PF13412.6 gi|330834843|ref|YP_004409571.1| - 4.3e-05 23.0 0.1 9.6e-05 21.9 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|330834843|ref|YP_004409571.1| - 0.0002 21.1 0.3 0.0005 19.9 0.3 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF3489 PF11994.8 gi|330834843|ref|YP_004409571.1| - 0.00022 21.2 0.0 0.00042 20.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) HTH_9 PF08221.11 gi|330834843|ref|YP_004409571.1| - 0.00053 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.20 gi|330834843|ref|YP_004409571.1| - 0.00056 19.7 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|330834843|ref|YP_004409571.1| - 0.0007 19.3 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|330834843|ref|YP_004409571.1| - 0.00081 19.4 0.0 0.0015 18.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330834843|ref|YP_004409571.1| - 0.0009 19.1 0.0 0.0018 18.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330834843|ref|YP_004409571.1| - 0.0022 17.7 0.0 0.004 16.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain PaaX PF07848.12 gi|330834843|ref|YP_004409571.1| - 0.028 14.6 0.0 0.074 13.3 0.0 1.7 1 0 0 1 1 1 0 PaaX-like protein MarR PF01047.22 gi|330834843|ref|YP_004409571.1| - 0.055 13.4 0.1 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_12 PF08461.10 gi|330834843|ref|YP_004409571.1| - 0.057 13.4 0.1 0.16 11.9 0.1 1.8 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|330834843|ref|YP_004409571.1| - 0.059 13.9 0.0 0.14 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|330834843|ref|YP_004409571.1| - 0.063 13.6 0.0 0.17 12.3 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator MerR PF00376.23 gi|330834843|ref|YP_004409571.1| - 0.075 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 MerR family regulatory protein Plasmo_rep PF12135.8 gi|330834843|ref|YP_004409571.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Plasmodium repeat family GntR PF00392.21 gi|330834843|ref|YP_004409571.1| - 0.12 12.0 0.1 0.29 10.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF2530 PF10745.9 gi|330834844|ref|YP_004409572.1| - 0.38 11.0 3.0 0.5 10.6 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF2207 PF09972.9 gi|330834844|ref|YP_004409572.1| - 7.3 5.2 6.0 7.2 5.3 6.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glyco_hydro_12 PF01670.16 gi|330834846|ref|YP_004409574.1| - 3e-15 56.8 2.3 5.8e-15 55.9 2.3 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 4HB_MCP_1 PF12729.7 gi|330834846|ref|YP_004409574.1| - 0.067 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Four helix bundle sensory module for signal transduction HSL_N PF06350.12 gi|330834846|ref|YP_004409574.1| - 0.18 10.8 0.3 4.4 6.2 0.0 2.2 2 0 0 2 2 2 0 Hormone-sensitive lipase (HSL) N-terminus MFS_1 PF07690.16 gi|330834847|ref|YP_004409575.1| - 7.9e-38 130.3 57.4 2e-24 86.2 21.3 3.3 1 1 2 3 3 3 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330834847|ref|YP_004409575.1| - 4.9e-06 25.7 37.7 0.00018 20.5 14.4 3.2 3 0 0 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|330834847|ref|YP_004409575.1| - 0.0026 16.2 8.0 0.0029 16.1 3.4 2.4 2 0 0 2 2 2 1 Transmembrane secretion effector ABC_tran PF00005.27 gi|330834848|ref|YP_004409576.1| - 6.7e-29 101.1 0.0 9.1e-29 100.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330834848|ref|YP_004409576.1| - 2.7e-12 47.1 0.7 2e-05 24.5 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330834848|ref|YP_004409576.1| - 0.00048 19.6 0.4 0.25 10.8 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330834848|ref|YP_004409576.1| - 0.0052 16.5 0.0 0.0097 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330834848|ref|YP_004409576.1| - 0.011 16.3 0.1 0.021 15.3 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|330834848|ref|YP_004409576.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|330834848|ref|YP_004409576.1| - 0.036 13.8 0.2 1.1 8.9 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain MukB PF04310.12 gi|330834848|ref|YP_004409576.1| - 0.042 13.7 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_27 PF13514.6 gi|330834848|ref|YP_004409576.1| - 0.045 13.3 0.0 0.071 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|330834848|ref|YP_004409576.1| - 0.17 10.8 0.0 0.38 9.6 0.0 1.6 1 1 1 2 2 2 0 AAA-like domain DUF347 PF03988.12 gi|330834849|ref|YP_004409577.1| - 0.034 14.3 0.5 0.034 14.3 0.5 3.9 3 2 0 3 3 3 0 Repeat of Unknown Function (DUF347) Ubie_methyltran PF01209.18 gi|330834851|ref|YP_004409579.1| - 4.2e-22 78.6 0.4 6.4e-22 78.0 0.4 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|330834851|ref|YP_004409579.1| - 1.1e-12 48.5 0.0 1.7e-12 47.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330834851|ref|YP_004409579.1| - 8e-12 45.7 0.0 1.4e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330834851|ref|YP_004409579.1| - 3.2e-09 36.8 0.0 5.4e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330834851|ref|YP_004409579.1| - 1.4e-06 28.3 0.0 1.8e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|330834851|ref|YP_004409579.1| - 3.1e-06 26.9 0.0 4.3e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|330834851|ref|YP_004409579.1| - 5.5e-06 27.1 0.0 1e-05 26.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330834851|ref|YP_004409579.1| - 0.0076 15.8 0.0 0.011 15.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|330834851|ref|YP_004409579.1| - 0.014 15.4 0.0 0.025 14.6 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain DUF981 PF06168.11 gi|330834852|ref|YP_004409580.1| - 1.9e-57 194.3 19.8 2.1e-57 194.1 19.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF981) Colicin_V PF02674.16 gi|330834852|ref|YP_004409580.1| - 3.9e-05 23.6 7.0 3.9e-05 23.6 7.0 2.5 1 1 1 2 2 2 1 Colicin V production protein 7tm_1 PF00001.21 gi|330834852|ref|YP_004409580.1| - 0.063 12.6 0.2 0.086 12.1 0.2 1.2 1 0 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) TssN PF17555.2 gi|330834852|ref|YP_004409580.1| - 0.88 8.9 14.5 0.13 11.7 3.1 2.1 1 1 1 2 2 2 0 Type VI secretion system, TssN Hemerythrin PF01814.23 gi|330834853|ref|YP_004409581.1| - 0.0013 19.3 0.1 0.0052 17.4 0.1 1.8 1 1 0 1 1 1 1 Hemerythrin HHE cation binding domain Thermopsin PF05317.11 gi|330834856|ref|YP_004409584.1| - 3.6e-73 246.2 21.8 3.6e-73 246.2 21.8 4.3 4 1 0 4 4 4 2 Thermopsin DUF2518 PF10726.9 gi|330834859|ref|YP_004409587.1| - 2.5 7.7 9.7 1.9 8.1 8.7 1.3 1 1 0 1 1 1 0 Protein of function (DUF2518) ABC_tran PF00005.27 gi|330834860|ref|YP_004409588.1| - 5.1e-24 85.3 0.0 7.7e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330834860|ref|YP_004409588.1| - 1.4e-14 54.6 0.3 2.8e-06 27.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330834860|ref|YP_004409588.1| - 8.9e-06 25.7 0.0 0.00062 19.6 0.0 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|330834860|ref|YP_004409588.1| - 0.00038 21.0 0.0 0.00073 20.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|330834860|ref|YP_004409588.1| - 0.0026 17.9 0.0 0.0048 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|330834860|ref|YP_004409588.1| - 0.0044 16.1 0.0 0.0069 15.4 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|330834860|ref|YP_004409588.1| - 0.0058 16.9 0.0 0.013 15.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|330834860|ref|YP_004409588.1| - 0.0091 15.4 0.6 2 7.8 0.6 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|330834860|ref|YP_004409588.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|330834860|ref|YP_004409588.1| - 0.022 14.4 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|330834860|ref|YP_004409588.1| - 0.044 13.5 0.5 0.085 12.6 0.5 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|330834860|ref|YP_004409588.1| - 0.094 12.5 0.0 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF5603 PF18231.1 gi|330834860|ref|YP_004409588.1| - 0.12 12.7 1.1 2.9 8.2 0.2 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5603) IstB_IS21 PF01695.17 gi|330834860|ref|YP_004409588.1| - 0.12 12.1 0.6 3.5 7.3 0.0 2.5 3 0 0 3 3 3 0 IstB-like ATP binding protein PIN_3 PF13470.6 gi|330834860|ref|YP_004409588.1| - 0.16 12.7 0.0 0.22 12.3 0.0 1.4 1 0 0 1 1 1 0 PIN domain PGPGW PF09656.10 gi|330834863|ref|YP_004409591.1| - 1.5 8.4 6.5 1.6 8.3 1.5 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) MFS_1 PF07690.16 gi|330834864|ref|YP_004409592.1| - 3.2e-26 92.1 44.4 3.4e-17 62.4 17.3 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|330834864|ref|YP_004409592.1| - 2.6e-08 33.2 8.3 1.6e-05 24.0 2.2 2.4 1 1 1 2 2 2 2 MFS_1 like family LacY_symp PF01306.19 gi|330834864|ref|YP_004409592.1| - 7.3e-05 21.7 17.6 0.00052 18.9 4.8 2.6 2 1 1 3 3 3 2 LacY proton/sugar symporter Tir_receptor_C PF07489.11 gi|330834864|ref|YP_004409592.1| - 0.12 12.3 0.9 0.21 11.6 0.9 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus EamA PF00892.20 gi|330834866|ref|YP_004409594.1| - 4.8e-17 62.4 27.0 2.7e-14 53.5 17.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family DUF4112 PF13430.6 gi|330834866|ref|YP_004409594.1| - 1.2 9.4 6.1 0.13 12.6 1.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4112) Sugar_tr PF00083.24 gi|330834867|ref|YP_004409595.1| - 4.1e-86 289.6 31.6 5.8e-86 289.1 31.6 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330834867|ref|YP_004409595.1| - 3e-22 79.0 44.9 2.8e-21 75.8 40.8 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_IclR PF09339.10 gi|330834869|ref|YP_004409597.1| - 2.3e-08 33.7 0.0 4.5e-08 32.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|330834869|ref|YP_004409597.1| - 6.4e-05 22.4 0.0 0.00014 21.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|330834869|ref|YP_004409597.1| - 6.9e-05 22.7 0.0 0.00013 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330834869|ref|YP_004409597.1| - 0.00018 21.3 0.1 0.0004 20.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|330834869|ref|YP_004409597.1| - 0.0016 18.3 0.0 0.0032 17.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330834869|ref|YP_004409597.1| - 0.0021 18.1 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|330834869|ref|YP_004409597.1| - 0.0023 17.9 0.1 0.006 16.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|330834869|ref|YP_004409597.1| - 0.0041 17.6 0.1 0.013 15.9 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|330834869|ref|YP_004409597.1| - 0.0088 16.0 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|330834869|ref|YP_004409597.1| - 0.072 13.0 0.1 0.19 11.7 0.1 1.7 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|330834869|ref|YP_004409597.1| - 0.09 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Rieske PF00355.26 gi|330834871|ref|YP_004409599.1| - 4.5e-15 55.4 0.0 7.2e-15 54.7 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Ni_hydr_CYTB PF01292.20 gi|330834871|ref|YP_004409599.1| - 3.8e-11 42.9 11.4 6e-11 42.3 11.4 1.3 1 0 0 1 1 1 1 Prokaryotic cytochrome b561 Rieske_2 PF13806.6 gi|330834871|ref|YP_004409599.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Rieske-like [2Fe-2S] domain PsbN PF02468.15 gi|330834871|ref|YP_004409599.1| - 0.14 12.1 0.1 0.57 10.1 0.1 2.1 1 0 0 1 1 1 0 Photosystem II reaction centre N protein (psbN) LolA PF03548.15 gi|330834872|ref|YP_004409600.1| - 0.041 13.6 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Outer membrane lipoprotein carrier protein LolA Abhydrolase_1 PF00561.20 gi|330834872|ref|YP_004409600.1| - 0.047 13.3 0.7 0.11 12.1 0.5 1.6 2 0 0 2 2 2 0 alpha/beta hydrolase fold DUF973 PF06157.11 gi|330834874|ref|YP_004409602.1| - 6.9e-32 110.7 20.4 8.9e-28 97.2 7.6 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF973) DUF973 PF06157.11 gi|330834875|ref|YP_004409603.1| - 2e-59 201.2 35.6 9.7e-59 198.9 35.6 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|330834875|ref|YP_004409603.1| - 1.2e-05 25.6 43.9 7.2e-05 23.1 25.0 3.8 1 1 3 4 4 4 3 Protein of unknown function (DUF996) DUF4500 PF14937.6 gi|330834875|ref|YP_004409603.1| - 0.3 11.1 5.4 0.11 12.5 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4500) UvrB PF12344.8 gi|330834876|ref|YP_004409604.1| - 0.0082 16.0 0.5 0.021 14.7 0.2 1.9 2 1 0 2 2 2 1 Ultra-violet resistance protein B HTH_24 PF13412.6 gi|330834878|ref|YP_004409606.1| - 4e-21 74.3 1.3 5.1e-14 51.6 0.8 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330834878|ref|YP_004409606.1| - 1.3e-14 53.7 0.3 8.8e-08 31.9 0.0 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|330834878|ref|YP_004409606.1| - 2.7e-08 33.6 0.0 0.011 15.6 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_Crp_2 PF13545.6 gi|330834878|ref|YP_004409606.1| - 1.4e-06 28.1 0.1 0.00015 21.7 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|330834878|ref|YP_004409606.1| - 3.2e-06 27.1 0.0 0.016 15.2 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR PF01047.22 gi|330834878|ref|YP_004409606.1| - 4.7e-06 26.4 0.0 0.033 14.1 0.1 2.3 2 0 0 2 2 2 2 MarR family HTH_11 PF08279.12 gi|330834878|ref|YP_004409606.1| - 2.9e-05 23.9 0.4 0.058 13.3 0.1 2.7 3 0 0 3 3 3 2 HTH domain HTH_23 PF13384.6 gi|330834878|ref|YP_004409606.1| - 3.9e-05 23.3 0.0 0.11 12.4 0.0 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_28 PF13518.6 gi|330834878|ref|YP_004409606.1| - 0.00024 21.2 0.0 0.014 15.5 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|330834878|ref|YP_004409606.1| - 0.00024 20.9 0.0 0.16 11.8 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|330834878|ref|YP_004409606.1| - 0.00055 19.8 0.0 0.25 11.3 0.1 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|330834878|ref|YP_004409606.1| - 0.00085 19.3 0.0 0.019 15.0 0.0 2.8 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain B-block_TFIIIC PF04182.12 gi|330834878|ref|YP_004409606.1| - 0.0078 16.3 0.0 0.023 14.9 0.0 2.0 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_3 PF01381.22 gi|330834878|ref|YP_004409606.1| - 0.0088 16.1 0.2 0.032 14.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.6 gi|330834878|ref|YP_004409606.1| - 0.017 15.5 0.1 3.3 8.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|330834878|ref|YP_004409606.1| - 0.02 14.7 0.0 6.6 6.6 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain FeoC PF09012.10 gi|330834878|ref|YP_004409606.1| - 0.021 14.9 0.0 0.067 13.3 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_26 PF13443.6 gi|330834878|ref|YP_004409606.1| - 0.025 15.0 0.1 0.37 11.3 0.0 2.4 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_10 PF04967.12 gi|330834878|ref|YP_004409606.1| - 0.029 14.2 0.1 0.2 11.5 0.1 2.1 2 0 0 2 2 2 0 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|330834878|ref|YP_004409606.1| - 0.031 14.5 0.0 0.93 9.7 0.0 2.5 3 0 0 3 3 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_39 PF14090.6 gi|330834878|ref|YP_004409606.1| - 0.042 13.6 0.1 0.12 12.1 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|330834878|ref|YP_004409606.1| - 0.11 12.4 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Rrf2 PF02082.20 gi|330834878|ref|YP_004409606.1| - 0.12 12.7 0.0 7.5 7.0 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator HTH_37 PF13744.6 gi|330834878|ref|YP_004409606.1| - 0.14 12.2 0.0 9.4 6.3 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain YjcQ PF09639.10 gi|330834878|ref|YP_004409606.1| - 0.14 12.4 0.0 0.49 10.6 0.0 1.9 2 0 0 2 2 2 0 YjcQ protein MMPL PF03176.15 gi|330834879|ref|YP_004409607.1| - 2.9e-37 128.4 29.9 1.3e-19 70.3 14.7 2.7 2 2 0 2 2 2 2 MMPL family SPC12 PF06645.13 gi|330834879|ref|YP_004409607.1| - 0.022 14.8 0.6 0.022 14.8 0.6 5.5 5 1 1 6 6 6 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Peptidase_S41 PF03572.18 gi|330834879|ref|YP_004409607.1| - 0.045 13.3 0.1 0.11 12.1 0.0 1.6 2 0 0 2 2 2 0 Peptidase family S41 MFS_1 PF07690.16 gi|330834880|ref|YP_004409608.1| - 1.3e-20 73.7 50.7 1.4e-14 53.8 37.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3084 PF11283.8 gi|330834880|ref|YP_004409608.1| - 1.7 8.7 7.6 0.18 11.8 0.4 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3084) FGFR3_TM PF18123.1 gi|330834880|ref|YP_004409608.1| - 5.4 6.6 12.9 0.68 9.5 0.1 4.5 4 0 0 4 4 4 0 Fibroblast growth factor receptor 3 transmembrane domain Rib_hydrolayse PF02267.17 gi|330834882|ref|YP_004409610.1| - 0.062 12.7 0.0 0.071 12.5 0.0 1.1 1 0 0 1 1 1 0 ADP-ribosyl cyclase CBS PF00571.28 gi|330834884|ref|YP_004409612.1| - 4.6e-23 81.4 3.4 1.1e-11 45.0 0.2 2.1 2 0 0 2 2 2 2 CBS domain ETF_QO PF05187.13 gi|330834885|ref|YP_004409613.1| - 5.9e-12 45.6 0.6 7.4e-12 45.3 0.6 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_2 PF12797.7 gi|330834885|ref|YP_004409613.1| - 2.9e-07 30.2 10.8 0.00092 19.2 2.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330834885|ref|YP_004409613.1| - 4e-07 30.1 8.8 7.1e-07 29.3 8.8 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330834885|ref|YP_004409613.1| - 9.9e-07 28.8 23.6 0.00031 20.8 2.4 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330834885|ref|YP_004409613.1| - 3.1e-06 26.8 4.2 3.1e-06 26.8 4.2 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330834885|ref|YP_004409613.1| - 8.2e-06 26.3 10.9 0.0025 18.4 13.4 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330834885|ref|YP_004409613.1| - 1e-05 25.6 12.6 0.00023 21.4 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330834885|ref|YP_004409613.1| - 8.7e-05 22.4 17.1 0.00014 21.8 3.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330834885|ref|YP_004409613.1| - 8.8e-05 22.9 5.1 0.0025 18.2 0.6 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330834885|ref|YP_004409613.1| - 0.036 14.2 3.6 0.036 14.2 3.6 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain ZZ PF00569.17 gi|330834885|ref|YP_004409613.1| - 0.044 13.6 4.6 0.19 11.6 0.0 2.3 2 0 0 2 2 2 0 Zinc finger, ZZ type Fer4_18 PF13746.6 gi|330834885|ref|YP_004409613.1| - 0.047 13.9 6.2 0.074 13.3 6.2 1.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330834885|ref|YP_004409613.1| - 0.058 14.4 12.8 1.2 10.2 4.3 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330834885|ref|YP_004409613.1| - 0.061 14.3 14.5 0.18 12.8 4.2 2.9 1 1 3 4 4 4 0 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|330834885|ref|YP_004409613.1| - 0.18 12.4 12.0 3.4 8.3 12.0 2.5 1 1 0 1 1 1 0 4Fe-4S dicluster domain FAM76 PF16046.5 gi|330834885|ref|YP_004409613.1| - 5.5 6.2 10.0 13 5.0 10.0 1.6 1 1 0 1 1 1 0 FAM76 protein DAO PF01266.24 gi|330834886|ref|YP_004409614.1| - 7.1e-14 52.2 0.2 3.3e-07 30.2 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|330834886|ref|YP_004409614.1| - 1.5e-09 37.7 1.6 2.2e-09 37.2 1.6 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|330834886|ref|YP_004409614.1| - 2.8e-09 36.7 0.2 5e-09 35.8 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|330834886|ref|YP_004409614.1| - 2.1e-07 30.4 2.2 3.3e-07 29.8 2.2 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|330834886|ref|YP_004409614.1| - 2.5e-07 30.3 0.2 2.8e-05 23.6 0.2 2.5 1 1 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|330834886|ref|YP_004409614.1| - 4.1e-07 29.1 4.7 2.9e-06 26.2 1.9 2.2 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|330834886|ref|YP_004409614.1| - 1.2e-05 24.6 4.7 2.6e-05 23.5 4.7 1.8 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|330834886|ref|YP_004409614.1| - 3.2e-05 24.1 0.3 7.4e-05 22.9 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|330834886|ref|YP_004409614.1| - 3.4e-05 24.3 1.6 0.00096 19.7 0.4 2.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|330834886|ref|YP_004409614.1| - 0.00022 20.4 0.1 0.00036 19.7 0.1 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|330834886|ref|YP_004409614.1| - 0.00031 20.1 2.6 0.0015 17.9 1.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330834886|ref|YP_004409614.1| - 0.00093 18.6 0.1 0.0015 17.9 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|330834886|ref|YP_004409614.1| - 0.001 18.4 1.8 0.0013 18.0 0.6 1.7 2 0 0 2 2 2 1 Thi4 family Trp_halogenase PF04820.14 gi|330834886|ref|YP_004409614.1| - 0.42 9.4 1.7 0.35 9.7 0.4 1.5 2 0 0 2 2 2 0 Tryptophan halogenase ETF PF01012.21 gi|330834887|ref|YP_004409615.1| - 1.1e-85 286.1 0.0 3.9e-45 154.0 0.4 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|330834887|ref|YP_004409615.1| - 8.8e-33 112.2 0.8 1.8e-32 111.2 0.8 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain Phage-MuB_C PF09077.11 gi|330834887|ref|YP_004409615.1| - 0.15 12.0 0.0 0.82 9.6 0.0 2.2 3 0 0 3 3 3 0 Mu B transposition protein, C terminal Nitroreductase PF00881.24 gi|330834889|ref|YP_004409617.1| - 5.1e-28 98.3 0.7 2.6e-27 96.0 0.7 1.9 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|330834889|ref|YP_004409617.1| - 5.9e-06 26.0 0.0 0.032 13.8 0.0 3.1 2 1 1 3 3 3 3 Putative TM nitroreductase YesK PF14150.6 gi|330834893|ref|YP_004409621.1| - 0.057 13.6 3.0 0.17 12.1 3.0 1.8 1 0 0 1 1 1 0 YesK-like protein YibE_F PF07907.11 gi|330834893|ref|YP_004409621.1| - 0.37 10.3 11.0 3.1 7.2 10.2 2.3 1 1 1 2 2 2 0 YibE/F-like protein CbiA PF01656.23 gi|330834894|ref|YP_004409622.1| - 1.5e-11 44.5 0.1 1.9e-11 44.1 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330834894|ref|YP_004409622.1| - 1.3e-10 41.5 3.8 1.1e-08 35.3 0.1 2.2 1 1 1 2 2 2 2 AAA domain ParA PF10609.9 gi|330834894|ref|YP_004409622.1| - 2.7e-08 33.6 0.1 4.6e-08 32.8 0.1 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330834894|ref|YP_004409622.1| - 2.3e-05 23.7 1.0 0.00026 20.3 0.1 2.4 1 1 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330834894|ref|YP_004409622.1| - 0.0011 18.6 0.2 0.0047 16.4 0.1 1.8 1 1 1 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|330834894|ref|YP_004409622.1| - 0.0023 17.3 0.6 0.0091 15.3 0.1 1.8 1 1 1 2 2 2 1 ATPase MipZ Zeta_toxin PF06414.12 gi|330834894|ref|YP_004409622.1| - 0.016 14.5 0.0 0.025 13.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|330834894|ref|YP_004409622.1| - 0.084 12.6 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain CLP1_P PF16575.5 gi|330834894|ref|YP_004409622.1| - 0.099 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Glycos_transf_2 PF00535.26 gi|330834898|ref|YP_004409626.1| - 0.14 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 SQS_PSY PF00494.19 gi|330834900|ref|YP_004409628.1| - 2.5e-46 158.3 0.0 2.8e-46 158.1 0.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Amino_oxidase PF01593.24 gi|330834902|ref|YP_004409630.1| - 9.3e-26 91.1 0.0 1.3e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|330834902|ref|YP_004409630.1| - 3.3e-14 52.9 0.0 7.5e-14 51.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|330834902|ref|YP_004409630.1| - 1e-12 48.4 0.0 3.7e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330834902|ref|YP_004409630.1| - 4.3e-09 36.0 0.0 1.1e-05 24.8 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|330834902|ref|YP_004409630.1| - 7.1e-08 32.0 0.0 2.9e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330834902|ref|YP_004409630.1| - 6.1e-07 29.0 0.1 3.4e-06 26.5 0.1 1.9 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|330834902|ref|YP_004409630.1| - 9.6e-07 29.3 1.0 0.0034 17.9 0.2 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330834902|ref|YP_004409630.1| - 2.4e-05 23.7 0.1 0.0031 16.8 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|330834902|ref|YP_004409630.1| - 2.7e-05 23.7 0.0 5.5e-05 22.7 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|330834902|ref|YP_004409630.1| - 5.8e-05 22.0 0.0 0.0059 15.4 0.1 2.2 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|330834902|ref|YP_004409630.1| - 0.00043 19.6 0.2 0.00068 19.0 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|330834902|ref|YP_004409630.1| - 0.028 13.5 0.3 0.05 12.7 0.3 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A UDPG_MGDP_dh_N PF03721.14 gi|330834902|ref|YP_004409630.1| - 0.036 13.6 0.1 0.061 12.9 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Trp_halogenase PF04820.14 gi|330834902|ref|YP_004409630.1| - 0.17 10.7 1.4 0.16 10.8 0.2 1.5 2 0 0 2 2 2 0 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|330834902|ref|YP_004409630.1| - 0.24 10.6 0.1 0.39 10.0 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain MazE_antitoxin PF04014.18 gi|330834903|ref|YP_004409631.1| - 4.6e-09 36.0 1.2 4.6e-09 36.0 1.2 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|330834903|ref|YP_004409631.1| - 8.3e-06 26.2 0.3 1e-05 25.9 0.3 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|330834904|ref|YP_004409632.1| - 2.3e-11 44.3 0.3 2.9e-11 43.9 0.3 1.1 1 0 0 1 1 1 1 PIN domain Sugar_tr PF00083.24 gi|330834909|ref|YP_004409637.1| - 4.8e-39 134.5 13.1 7.1e-39 133.9 13.1 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330834909|ref|YP_004409637.1| - 2.2e-21 76.2 31.3 1.2e-17 63.9 23.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily CbiQ PF02361.16 gi|330834910|ref|YP_004409638.1| - 6.2e-12 45.6 18.1 1.1e-11 44.9 18.1 1.4 1 0 0 1 1 1 1 Cobalt transport protein Uroplakin_II PF07353.12 gi|330834910|ref|YP_004409638.1| - 2.2 7.7 5.8 0.2 11.1 0.1 2.1 2 1 1 3 3 3 0 Uroplakin II ABC_tran PF00005.27 gi|330834911|ref|YP_004409639.1| - 4.3e-44 150.4 0.1 5.8e-22 78.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|330834911|ref|YP_004409639.1| - 4e-11 43.3 7.7 4.5e-05 23.4 0.1 4.2 2 2 2 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330834911|ref|YP_004409639.1| - 4.1e-11 42.5 0.7 0.0002 21.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain SMC_N PF02463.19 gi|330834911|ref|YP_004409639.1| - 4.1e-11 42.7 1.4 0.00032 20.2 0.6 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|330834911|ref|YP_004409639.1| - 3.1e-08 33.7 0.2 0.00043 20.2 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|330834911|ref|YP_004409639.1| - 5.5e-08 33.6 0.0 0.00012 22.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|330834911|ref|YP_004409639.1| - 1.3e-07 31.7 0.1 7.7e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|330834911|ref|YP_004409639.1| - 8.7e-07 29.5 0.4 0.053 13.9 0.2 2.4 2 1 0 2 2 2 2 AAA ATPase domain Mg_chelatase PF01078.21 gi|330834911|ref|YP_004409639.1| - 4.4e-06 26.2 0.0 0.071 12.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|330834911|ref|YP_004409639.1| - 4.5e-05 23.1 0.0 0.062 12.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|330834911|ref|YP_004409639.1| - 4.5e-05 23.2 0.0 0.06 13.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|330834911|ref|YP_004409639.1| - 8e-05 22.9 0.8 0.21 11.9 0.0 3.1 3 1 0 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|330834911|ref|YP_004409639.1| - 8.2e-05 22.8 0.7 0.026 14.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|330834911|ref|YP_004409639.1| - 9.2e-05 23.0 0.4 0.28 11.7 0.0 2.9 3 0 0 3 3 2 2 AAA domain NACHT PF05729.12 gi|330834911|ref|YP_004409639.1| - 0.00012 22.0 0.0 0.16 11.9 0.0 2.5 2 0 0 2 2 2 2 NACHT domain T2SSE PF00437.20 gi|330834911|ref|YP_004409639.1| - 0.00043 19.4 1.3 0.35 9.9 0.0 2.6 3 0 0 3 3 3 2 Type II/IV secretion system protein AAA_5 PF07728.14 gi|330834911|ref|YP_004409639.1| - 0.0014 18.7 0.3 1.2 9.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|330834911|ref|YP_004409639.1| - 0.0022 17.9 0.0 0.43 10.5 0.0 2.7 2 0 0 2 2 2 1 NTPase FtsK_SpoIIIE PF01580.18 gi|330834911|ref|YP_004409639.1| - 0.0023 17.4 0.1 1.7 7.9 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|330834911|ref|YP_004409639.1| - 0.005 16.6 0.2 2.8 7.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|330834911|ref|YP_004409639.1| - 0.0061 15.8 0.1 2.5 7.2 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain G-alpha PF00503.20 gi|330834911|ref|YP_004409639.1| - 0.0063 15.7 0.1 1.9 7.6 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit APS_kinase PF01583.20 gi|330834911|ref|YP_004409639.1| - 0.007 16.3 0.5 1.7 8.5 0.1 3.1 3 0 0 3 3 3 1 Adenylylsulphate kinase AAA PF00004.29 gi|330834911|ref|YP_004409639.1| - 0.0085 16.5 0.0 0.54 10.7 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ABC_ATPase PF09818.9 gi|330834911|ref|YP_004409639.1| - 0.013 14.4 0.1 0.13 11.1 0.0 2.6 3 0 0 3 3 3 0 Predicted ATPase of the ABC class MMR_HSR1 PF01926.23 gi|330834911|ref|YP_004409639.1| - 0.014 15.5 2.0 2.8 8.0 0.2 2.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF815 PF05673.13 gi|330834911|ref|YP_004409639.1| - 0.014 14.5 0.0 3.3 6.8 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) DUF87 PF01935.17 gi|330834911|ref|YP_004409639.1| - 0.018 15.2 2.6 4.9 7.2 0.1 3.4 4 0 0 4 4 3 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|330834911|ref|YP_004409639.1| - 0.019 15.4 0.1 5 7.5 0.0 2.4 2 0 0 2 2 2 0 RNA helicase AAA_27 PF13514.6 gi|330834911|ref|YP_004409639.1| - 0.019 14.6 0.1 0.066 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|330834911|ref|YP_004409639.1| - 0.022 14.1 0.0 4.8 6.4 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin TsaE PF02367.17 gi|330834911|ref|YP_004409639.1| - 0.027 14.5 0.1 5.8 6.9 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|330834911|ref|YP_004409639.1| - 0.03 14.6 0.0 1.1 9.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain PIN_4 PF13638.6 gi|330834911|ref|YP_004409639.1| - 0.032 14.5 1.1 0.057 13.7 0.4 1.7 2 0 0 2 2 1 0 PIN domain ATP_bind_1 PF03029.17 gi|330834911|ref|YP_004409639.1| - 0.034 13.9 0.9 6.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_7 PF12775.7 gi|330834911|ref|YP_004409639.1| - 0.035 13.6 0.1 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|330834911|ref|YP_004409639.1| - 0.035 13.8 0.1 14 5.4 0.1 2.7 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.19 gi|330834911|ref|YP_004409639.1| - 0.036 13.7 0.6 0.91 9.1 0.1 2.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|330834911|ref|YP_004409639.1| - 0.037 13.8 0.1 6.4 6.5 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein ATPase PF06745.13 gi|330834911|ref|YP_004409639.1| - 0.04 13.2 0.3 0.58 9.5 0.1 2.4 2 0 0 2 2 2 0 KaiC Sigma54_activat PF00158.26 gi|330834911|ref|YP_004409639.1| - 0.051 13.3 0.1 1.3 8.6 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.22 gi|330834911|ref|YP_004409639.1| - 0.054 13.1 0.1 0.6 9.7 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain CPT PF07931.12 gi|330834911|ref|YP_004409639.1| - 0.057 13.3 0.3 13 5.5 0.1 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_14 PF13173.6 gi|330834911|ref|YP_004409639.1| - 0.09 12.8 0.0 0.91 9.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain VirE PF05272.11 gi|330834911|ref|YP_004409639.1| - 0.096 12.4 0.0 1.1 9.0 0.0 2.1 2 0 0 2 2 2 0 Virulence-associated protein E AAA_13 PF13166.6 gi|330834911|ref|YP_004409639.1| - 0.096 11.3 0.2 1.5 7.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain MukB PF04310.12 gi|330834911|ref|YP_004409639.1| - 0.1 12.4 0.1 0.47 10.2 0.0 2.0 2 0 0 2 2 2 0 MukB N-terminal DUF3584 PF12128.8 gi|330834911|ref|YP_004409639.1| - 0.12 9.9 0.1 0.18 9.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Viral_helicase1 PF01443.18 gi|330834911|ref|YP_004409639.1| - 0.13 12.0 0.4 0.49 10.1 0.0 2.1 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase DAP3 PF10236.9 gi|330834911|ref|YP_004409639.1| - 0.15 11.2 1.1 7.2 5.7 0.1 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Gtr1_RagA PF04670.12 gi|330834911|ref|YP_004409639.1| - 0.61 9.4 2.3 1.2 8.4 0.2 2.1 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Cas_DxTHG PF09455.10 gi|330834913|ref|YP_004409641.1| - 1.7e-23 83.8 2.9 2.4e-23 83.3 2.9 1.2 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family Peptidase_M99 PF17033.5 gi|330834913|ref|YP_004409641.1| - 0.023 14.1 0.0 0.042 13.3 0.0 1.4 1 0 0 1 1 1 0 Carboxypeptidase controlling helical cell shape catalytic Phosphoesterase PF04185.14 gi|330834914|ref|YP_004409642.1| - 1.6e-72 244.6 1.0 2.1e-72 244.3 1.0 1.1 1 0 0 1 1 1 1 Phosphoesterase family DUF3043 PF11241.8 gi|330834914|ref|YP_004409642.1| - 2.4 8.2 3.6 0.44 10.6 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3043) DUF2892 PF11127.8 gi|330834916|ref|YP_004409644.1| - 0.52 10.4 0.2 0.52 10.4 0.2 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF2892) UPF0016 PF01169.19 gi|330834916|ref|YP_004409644.1| - 2.1 8.7 10.1 3.3 8.1 1.7 2.5 1 1 2 3 3 3 0 Uncharacterized protein family UPF0016 SBP_bac_11 PF13531.6 gi|330834918|ref|YP_004409646.1| - 3.2e-23 82.7 0.3 4.5e-23 82.2 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|330834918|ref|YP_004409646.1| - 2.9e-07 30.6 5.5 5.3e-07 29.7 2.2 2.0 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|330834918|ref|YP_004409646.1| - 1.3e-06 28.6 5.7 3.4e-06 27.2 5.7 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|330834919|ref|YP_004409647.1| - 4.9e-17 62.3 10.9 4.9e-17 62.3 10.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF202 PF02656.15 gi|330834920|ref|YP_004409648.1| - 0.0044 17.4 0.0 0.0049 17.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF202) LtrA PF06772.11 gi|330834920|ref|YP_004409648.1| - 0.0054 16.0 0.0 0.0057 15.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial low temperature requirement A protein (LtrA) DUF3262 PF11660.8 gi|330834920|ref|YP_004409648.1| - 0.008 16.5 0.5 0.32 11.4 0.0 2.0 1 1 0 2 2 2 1 Protein of unknown function (DUF3262) OppC_N PF12911.7 gi|330834920|ref|YP_004409648.1| - 6.9 6.7 9.2 8.6 6.4 2.3 2.1 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Sulf_transp PF04143.14 gi|330834921|ref|YP_004409649.1| - 4.5e-12 46.2 2.8 6.6e-12 45.6 2.8 1.2 1 0 0 1 1 1 1 Sulphur transport Sulf_transp PF04143.14 gi|330834922|ref|YP_004409650.1| - 2.6e-10 40.4 11.5 2.6e-10 40.4 11.5 1.5 2 0 0 2 2 2 1 Sulphur transport Pkinase PF00069.25 gi|330834924|ref|YP_004409652.1| - 1.6e-23 83.4 0.0 2.4e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|330834924|ref|YP_004409652.1| - 1.7e-07 30.8 0.0 5.2e-07 29.2 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase DUF1955 PF09205.10 gi|330834924|ref|YP_004409652.1| - 0.02 14.6 0.2 0.066 12.9 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1955) NosD PF05048.13 gi|330834926|ref|YP_004409654.1| - 4.1e-49 167.0 146.4 2.3e-13 50.0 29.4 4.4 1 1 4 5 5 5 5 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|330834926|ref|YP_004409654.1| - 4.6e-32 111.1 94.0 1e-11 44.9 30.5 4.6 1 1 3 4 4 4 4 Right handed beta helix region DUF3905 PF13045.6 gi|330834926|ref|YP_004409654.1| - 0.026 14.5 0.8 0.088 12.8 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3905) DUF488 PF04343.13 gi|330834927|ref|YP_004409655.1| - 1e-27 97.2 0.1 1.2e-27 96.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 ZapD PF07072.11 gi|330834927|ref|YP_004409655.1| - 0.13 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Cell division protein HTH_10 PF04967.12 gi|330834928|ref|YP_004409656.1| - 4.1e-21 74.5 0.2 7.7e-21 73.7 0.2 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|330834928|ref|YP_004409656.1| - 3.1e-06 26.6 0.3 8.8e-06 25.2 0.3 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|330834928|ref|YP_004409656.1| - 6.8e-05 22.3 0.1 0.00017 21.1 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|330834928|ref|YP_004409656.1| - 0.0022 17.7 0.0 0.0054 16.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|330834928|ref|YP_004409656.1| - 0.0027 17.9 0.2 0.012 15.7 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_3 PF01381.22 gi|330834928|ref|YP_004409656.1| - 0.0054 16.8 0.1 0.015 15.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_26 PF13443.6 gi|330834928|ref|YP_004409656.1| - 0.0067 16.8 0.4 0.029 14.8 0.0 2.3 3 0 0 3 3 3 1 Cro/C1-type HTH DNA-binding domain GntR PF00392.21 gi|330834928|ref|YP_004409656.1| - 0.0094 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|330834928|ref|YP_004409656.1| - 0.013 15.5 0.1 0.057 13.4 0.1 2.1 1 1 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|330834928|ref|YP_004409656.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|330834928|ref|YP_004409656.1| - 0.013 15.4 0.0 0.036 14.0 0.0 1.7 2 0 0 2 2 2 0 MarR family Cas_Cas6 PF01881.16 gi|330834928|ref|YP_004409656.1| - 0.014 16.0 0.8 0.029 14.9 0.8 1.6 1 1 0 1 1 1 0 CRISPR associated protein Cas6 HTH_AsnC-type PF13404.6 gi|330834928|ref|YP_004409656.1| - 0.024 14.4 0.0 0.062 13.1 0.0 1.8 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_18 PF12833.7 gi|330834928|ref|YP_004409656.1| - 0.027 14.7 0.0 0.26 11.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|330834928|ref|YP_004409656.1| - 0.039 13.9 0.7 0.1 12.6 0.1 2.2 2 0 0 2 2 2 0 HTH domain HTH_35 PF13693.6 gi|330834928|ref|YP_004409656.1| - 0.04 13.9 0.0 0.096 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_ISL3 PF13542.6 gi|330834928|ref|YP_004409656.1| - 0.052 13.0 0.0 0.092 12.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 gi|330834928|ref|YP_004409656.1| - 0.077 12.8 0.0 0.44 10.3 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|330834928|ref|YP_004409656.1| - 0.13 12.1 0.0 0.34 10.7 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AraC PF00165.23 gi|330834928|ref|YP_004409656.1| - 0.14 12.3 0.0 0.6 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix proteins, AraC family DUF4162 PF13732.6 gi|330834928|ref|YP_004409656.1| - 0.18 12.5 3.0 2.1 9.1 0.2 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4162) FliG_C PF01706.16 gi|330834930|ref|YP_004409658.1| - 0.012 15.8 2.7 0.021 15.0 0.5 2.0 2 0 0 2 2 2 0 FliG C-terminal domain BLM10_mid PF16507.5 gi|330834930|ref|YP_004409658.1| - 0.028 13.1 0.2 0.032 12.9 0.2 1.0 1 0 0 1 1 1 0 Proteasome-substrate-size regulator, mid region DUF4218 PF13960.6 gi|330834930|ref|YP_004409658.1| - 0.034 13.8 0.1 0.06 13.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4218) Pyr_redox_2 PF07992.14 gi|330834931|ref|YP_004409659.1| - 4.4e-15 55.7 0.1 1e-12 47.9 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330834931|ref|YP_004409659.1| - 0.0013 18.4 0.0 0.0063 16.1 0.0 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|330834931|ref|YP_004409659.1| - 0.0015 19.1 1.8 0.44 11.2 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|330834931|ref|YP_004409659.1| - 0.0074 15.2 0.3 0.016 14.1 0.2 1.5 1 1 0 1 1 1 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|330834931|ref|YP_004409659.1| - 0.0075 16.3 0.0 0.35 10.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|330834931|ref|YP_004409659.1| - 0.03 14.5 0.0 0.074 13.3 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NuA4 PF09340.10 gi|330834931|ref|YP_004409659.1| - 0.035 14.0 0.3 0.35 10.8 0.0 2.4 1 1 1 2 2 2 0 Histone acetyltransferase subunit NuA4 Malic_M PF03949.15 gi|330834931|ref|YP_004409659.1| - 0.047 13.0 0.0 0.07 12.4 0.0 1.2 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain Cuticle_1 PF08140.11 gi|330834931|ref|YP_004409659.1| - 0.076 13.1 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Crustacean cuticle protein repeat K_oxygenase PF13434.6 gi|330834931|ref|YP_004409659.1| - 0.092 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) TetR_N PF00440.23 gi|330834932|ref|YP_004409660.1| - 6.7e-16 57.8 0.3 1e-15 57.3 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family DUF1464 PF07318.12 gi|330834932|ref|YP_004409660.1| - 0.00068 18.9 0.6 0.00089 18.5 0.6 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) HTH_Tnp_1_2 PF13022.6 gi|330834932|ref|YP_004409660.1| - 0.044 13.9 0.1 0.099 12.8 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix of insertion element transposase DUF229 PF02995.17 gi|330834932|ref|YP_004409660.1| - 0.082 11.5 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) DUF2249 PF10006.9 gi|330834934|ref|YP_004409662.1| - 1.2e-09 37.9 0.0 1.3e-09 37.8 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) NicO PF03824.16 gi|330834936|ref|YP_004409664.1| - 8.7e-87 291.0 12.6 1.1e-86 290.8 12.6 1.1 1 0 0 1 1 1 1 High-affinity nickel-transport protein DUF2231 PF09990.9 gi|330834936|ref|YP_004409664.1| - 7.8 7.0 10.4 0.15 12.5 2.5 2.3 3 0 0 3 3 3 0 Predicted membrane protein (DUF2231) ProQ_C PF17516.2 gi|330834939|ref|YP_004409667.1| - 0.0092 15.4 0.9 0.72 9.3 0.1 2.3 1 1 1 2 2 2 2 ProQ C-terminal domain Blt1_C PF17183.4 gi|330834939|ref|YP_004409667.1| - 0.029 14.0 0.3 3.9 7.1 0.0 3.0 4 0 0 4 4 4 0 Get5 carboxyl domain GIT_CC PF16559.5 gi|330834939|ref|YP_004409667.1| - 0.39 10.6 5.1 25 4.8 0.5 3.1 1 1 2 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor Rxt3 PF08642.10 gi|330834942|ref|YP_004409670.1| - 0.13 13.0 0.1 0.15 12.8 0.1 1.1 1 0 0 1 1 1 0 Histone deacetylation protein Rxt3 Rhamnogal_lyase PF06045.11 gi|330834946|ref|YP_004409674.1| - 0.051 13.0 0.0 0.059 12.8 0.0 1.1 1 0 0 1 1 1 0 Rhamnogalacturonate lyase family MBOAT PF03062.19 gi|330834960|ref|YP_004409688.1| - 0.023 14.1 4.4 0.027 13.8 4.4 1.0 1 0 0 1 1 1 0 MBOAT, membrane-bound O-acyltransferase family Cas_Cas1 PF01867.16 gi|330834963|ref|YP_004409691.1| - 1.6e-58 198.1 0.0 1.9e-58 197.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 EcoR124_C PF12008.8 gi|330834963|ref|YP_004409691.1| - 0.091 12.4 1.6 0.48 10.0 0.2 2.1 2 0 0 2 2 2 0 Type I restriction and modification enzyme - subunit R C terminal CRISPR_Cas2 PF09827.9 gi|330834964|ref|YP_004409692.1| - 1.3e-17 63.7 0.0 1.6e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Csa1 PF06023.12 gi|330834966|ref|YP_004409694.1| - 3.2e-101 338.5 0.0 3.8e-101 338.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|330834967|ref|YP_004409695.1| - 1.6e-21 77.1 0.0 1.9e-21 76.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|330834967|ref|YP_004409695.1| - 9.4e-07 29.0 0.0 1.1e-06 28.8 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas02710 PF09670.10 gi|330834969|ref|YP_004409697.1| - 0.0062 15.4 0.0 0.0086 14.9 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) PIN PF01850.21 gi|330834972|ref|YP_004409700.1| - 0.016 15.7 0.0 0.017 15.7 0.0 1.0 1 0 0 1 1 1 0 PIN domain PIN PF01850.21 gi|330834973|ref|YP_004409701.1| - 0.00012 22.6 0.0 0.00012 22.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|330834974|ref|YP_004409702.1| - 1.4e-06 28.1 1.4 2.8e-06 27.1 1.4 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|330834974|ref|YP_004409702.1| - 0.007 16.3 0.3 0.012 15.6 0.1 1.5 2 0 0 2 2 2 1 MraZ protein, putative antitoxin-like G_path_suppress PF15991.5 gi|330834976|ref|YP_004409704.1| - 0.085 13.0 2.0 0.093 12.9 2.0 1.1 1 0 0 1 1 1 0 G-protein pathway suppressor DUF3221 PF11518.8 gi|330834978|ref|YP_004409706.1| - 0.015 15.7 0.1 0.015 15.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3221) Glycos_transf_1 PF00534.20 gi|330834989|ref|YP_004409717.1| - 0.049 13.2 0.0 0.05 13.1 0.0 1.1 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|330834991|ref|YP_004409719.1| - 3.4e-12 46.2 0.0 6.7e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330834991|ref|YP_004409719.1| - 5e-12 46.4 0.0 2.3e-11 44.3 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330834991|ref|YP_004409719.1| - 0.00013 22.0 0.3 0.00033 20.7 0.3 1.8 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|330834991|ref|YP_004409719.1| - 0.0022 18.3 0.0 0.014 15.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 AA_permease_2 PF13520.6 gi|330834993|ref|YP_004409721.1| - 1.8e-25 89.7 49.8 2.4e-25 89.3 49.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330834993|ref|YP_004409721.1| - 1.3e-22 80.1 43.5 2.1e-22 79.4 43.5 1.2 1 0 0 1 1 1 1 Amino acid permease Orbi_VP2 PF00898.17 gi|330834994|ref|YP_004409722.1| - 0.022 12.5 0.0 0.028 12.2 0.0 1.1 1 0 0 1 1 1 0 Orbivirus outer capsid protein VP2 Cas_NE0113 PF09623.10 gi|330834995|ref|YP_004409723.1| - 1.8e-05 24.5 0.0 2.5e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.10 gi|330834995|ref|YP_004409723.1| - 0.0057 15.5 0.0 0.0068 15.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) RAMPs PF03787.15 gi|330834997|ref|YP_004409725.1| - 3.1e-08 33.9 0.1 8.6e-08 32.5 0.1 1.6 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|330834999|ref|YP_004409727.1| - 1.6e-11 44.7 0.0 3.6e-11 43.5 0.0 1.6 1 1 0 1 1 1 1 RAMP superfamily Cas_Cmr3 PF09700.10 gi|330834999|ref|YP_004409727.1| - 0.00033 20.2 0.0 0.048 13.1 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein (Cas_Cmr3) MIB_HERC2 PF06701.13 gi|330834999|ref|YP_004409727.1| - 0.17 12.1 0.0 0.35 11.1 0.0 1.6 1 0 0 1 1 1 0 Mib_herc2 HD PF01966.22 gi|330835000|ref|YP_004409728.1| - 0.001 19.3 0.7 0.0032 17.7 0.3 2.1 2 0 0 2 2 2 1 HD domain DNA_pol_B_exo2 PF10108.9 gi|330835000|ref|YP_004409728.1| - 0.056 13.1 0.1 0.16 11.6 0.1 1.7 1 0 0 1 1 1 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB zf-ribbon_3 PF13248.6 gi|330835000|ref|YP_004409728.1| - 0.091 12.2 1.8 0.17 11.3 1.8 1.4 1 0 0 1 1 1 0 zinc-ribbon domain UL11 PF11094.8 gi|330835001|ref|YP_004409729.1| - 0.012 15.5 0.1 0.014 15.3 0.1 1.1 1 0 0 1 1 1 0 Membrane-associated tegument protein RAMPs PF03787.15 gi|330835002|ref|YP_004409730.1| - 2.6e-06 27.6 1.6 4.2e-06 27.0 1.6 1.5 1 1 0 1 1 1 1 RAMP superfamily Sigma_reg_N PF13800.6 gi|330835002|ref|YP_004409730.1| - 0.069 13.4 0.1 14 6.0 0.0 2.4 2 0 0 2 2 2 0 Sigma factor regulator N-terminal RAMPs PF03787.15 gi|330835004|ref|YP_004409732.1| - 5.6e-30 105.0 0.0 1.1e-29 104.0 0.0 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|330835005|ref|YP_004409733.1| - 5.6e-22 78.8 0.5 8.5e-22 78.2 0.5 1.3 1 0 0 1 1 1 1 RAMP superfamily CobT PF06213.12 gi|330835006|ref|YP_004409734.1| - 0.025 14.0 8.8 0.036 13.4 8.8 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT PH_14 PF17787.1 gi|330835006|ref|YP_004409734.1| - 0.048 13.5 0.4 0.078 12.8 0.4 1.3 1 0 0 1 1 1 0 PH domain DUF2877 PF11392.8 gi|330835006|ref|YP_004409734.1| - 0.088 13.5 1.9 12 6.6 1.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) DUF913 PF06025.12 gi|330835006|ref|YP_004409734.1| - 0.43 9.5 4.4 0.6 9.0 4.4 1.1 1 0 0 1 1 1 0 Domain of Unknown Function (DUF913) PBS_linker_poly PF00427.21 gi|330835007|ref|YP_004409735.1| - 0.036 14.1 0.0 0.04 14.0 0.0 1.1 1 0 0 1 1 1 0 Phycobilisome Linker polypeptide HMW1C_N PF18071.1 gi|330835008|ref|YP_004409736.1| - 0.16 11.8 0.0 0.17 11.7 0.0 1.0 1 0 0 1 1 1 0 HMW1C N-terminal Cas6_N PF17952.1 gi|330835009|ref|YP_004409737.1| - 7.7e-29 100.3 0.4 1.5e-28 99.3 0.1 1.6 2 0 0 2 2 2 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|330835009|ref|YP_004409737.1| - 1.2e-11 45.1 0.0 4.1e-11 43.4 0.0 1.9 2 0 0 2 2 2 1 CRISPR-associated endoribonuclease Cas6 HTH_24 PF13412.6 gi|330835010|ref|YP_004409738.1| - 1.4e-10 40.6 0.1 3.3e-10 39.4 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330835010|ref|YP_004409738.1| - 7e-05 22.6 0.0 0.00019 21.2 0.0 1.8 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|330835010|ref|YP_004409738.1| - 0.00045 20.1 0.0 0.00087 19.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|330835010|ref|YP_004409738.1| - 0.00065 19.5 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|330835010|ref|YP_004409738.1| - 0.002 18.0 0.2 0.0047 16.8 0.2 1.7 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|330835010|ref|YP_004409738.1| - 0.0047 16.9 0.1 0.011 15.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|330835010|ref|YP_004409738.1| - 0.0053 16.6 0.0 0.012 15.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|330835010|ref|YP_004409738.1| - 0.0071 16.8 0.1 0.02 15.4 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|330835010|ref|YP_004409738.1| - 0.0093 16.1 0.1 0.065 13.4 0.0 2.3 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|330835010|ref|YP_004409738.1| - 0.025 14.4 0.0 0.072 12.9 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HemN_C PF06969.16 gi|330835010|ref|YP_004409738.1| - 0.079 13.0 0.0 0.25 11.4 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain DUF2250 PF10007.9 gi|330835010|ref|YP_004409738.1| - 0.13 12.4 0.1 0.3 11.2 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Cas_Csa5 PF09702.10 gi|330835011|ref|YP_004409739.1| - 1.2e-34 118.8 0.1 1.5e-34 118.4 0.1 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) DevR PF01905.16 gi|330835012|ref|YP_004409740.1| - 5.7e-75 251.8 0.0 6.7e-75 251.6 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 PBC PF03792.13 gi|330835012|ref|YP_004409740.1| - 0.12 12.1 0.2 0.4 10.4 0.0 1.8 2 0 0 2 2 2 0 PBC domain Cas_Cas5d PF09704.10 gi|330835013|ref|YP_004409741.1| - 0.066 13.1 0.5 0.77 9.6 0.5 2.2 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.29 gi|330835014|ref|YP_004409742.1| - 3.7e-11 43.1 0.1 1.3e-09 38.0 0.0 2.8 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330835014|ref|YP_004409742.1| - 2.6e-09 37.4 0.3 1.3e-08 35.1 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|330835014|ref|YP_004409742.1| - 0.0002 21.4 0.0 0.00063 19.8 0.0 1.8 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|330835014|ref|YP_004409742.1| - 0.00052 20.4 0.0 0.0033 17.8 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain PhoH PF02562.16 gi|330835014|ref|YP_004409742.1| - 0.00063 19.3 0.1 0.0018 17.7 0.0 1.8 2 0 0 2 2 2 1 PhoH-like protein IstB_IS21 PF01695.17 gi|330835014|ref|YP_004409742.1| - 0.00085 19.1 0.0 0.0021 17.8 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|330835014|ref|YP_004409742.1| - 0.0022 17.6 0.0 0.005 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain Guanylate_kin PF00625.21 gi|330835014|ref|YP_004409742.1| - 0.019 14.7 0.1 1.8 8.2 0.1 2.3 2 0 0 2 2 2 0 Guanylate kinase Hydrolase_6 PF13344.6 gi|330835014|ref|YP_004409742.1| - 0.023 14.8 0.0 0.96 9.6 0.0 2.6 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase AAA_22 PF13401.6 gi|330835014|ref|YP_004409742.1| - 0.058 13.7 0.0 0.57 10.5 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330835014|ref|YP_004409742.1| - 0.12 12.8 0.0 2.1 8.8 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|330835014|ref|YP_004409742.1| - 0.16 12.3 0.0 0.2 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain HD_6 PF18019.1 gi|330835015|ref|YP_004409743.1| - 2.5e-06 27.7 0.0 3.8e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 HD domain HD PF01966.22 gi|330835015|ref|YP_004409743.1| - 0.0019 18.4 0.0 0.003 17.8 0.0 1.4 1 0 0 1 1 1 1 HD domain Cpta_toxin PF07254.12 gi|330835015|ref|YP_004409743.1| - 0.04 13.9 0.1 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 Membrane-bound toxin component of toxin-antitoxin system NurA PF09376.10 gi|330835017|ref|YP_004409745.1| - 4.9e-09 36.2 0.1 8.7e-09 35.4 0.1 1.3 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|330835018|ref|YP_004409746.1| - 2.6e-10 40.8 0.2 7.8e-10 39.2 0.1 1.8 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|330835018|ref|YP_004409746.1| - 1.2e-09 37.3 0.0 0.00079 18.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA PF00004.29 gi|330835018|ref|YP_004409746.1| - 4.8e-06 27.0 0.2 0.017 15.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|330835018|ref|YP_004409746.1| - 0.0002 20.4 0.0 0.00038 19.5 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|330835018|ref|YP_004409746.1| - 0.00052 19.4 0.0 0.015 14.7 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family NACHT PF05729.12 gi|330835018|ref|YP_004409746.1| - 0.00053 19.9 0.1 0.82 9.6 0.0 2.3 2 0 0 2 2 2 2 NACHT domain ResIII PF04851.15 gi|330835018|ref|YP_004409746.1| - 0.00074 19.6 0.0 0.49 10.4 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|330835018|ref|YP_004409746.1| - 0.00076 19.8 0.0 0.079 13.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain WD40_like PF17005.5 gi|330835018|ref|YP_004409746.1| - 0.0032 16.8 0.1 0.071 12.4 0.1 2.3 1 1 0 1 1 1 1 WD40-like domain AAA_10 PF12846.7 gi|330835018|ref|YP_004409746.1| - 0.0081 15.1 0.0 0.38 9.6 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain Zot PF05707.12 gi|330835018|ref|YP_004409746.1| - 0.0082 15.8 0.0 0.057 13.1 0.0 2.2 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) ABC_tran PF00005.27 gi|330835018|ref|YP_004409746.1| - 0.012 16.1 0.0 0.054 14.0 0.0 2.1 2 0 0 2 2 2 0 ABC transporter DEAD PF00270.29 gi|330835018|ref|YP_004409746.1| - 0.02 14.7 0.0 8.3 6.1 0.0 2.3 2 0 0 2 2 2 0 DEAD/DEAH box helicase Zeta_toxin PF06414.12 gi|330835018|ref|YP_004409746.1| - 0.037 13.3 0.0 0.3 10.3 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin DUF2075 PF09848.9 gi|330835018|ref|YP_004409746.1| - 0.04 13.2 0.0 2.7 7.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Roc PF08477.13 gi|330835018|ref|YP_004409746.1| - 0.041 14.1 0.2 7.4 6.8 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|330835018|ref|YP_004409746.1| - 0.041 14.3 0.0 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain DUF3584 PF12128.8 gi|330835018|ref|YP_004409746.1| - 0.17 9.3 0.5 0.27 8.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) TsaE PF02367.17 gi|330835018|ref|YP_004409746.1| - 0.2 11.6 0.3 0.78 9.7 0.1 2.1 2 1 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PIN_4 PF13638.6 gi|330835019|ref|YP_004409747.1| - 0.061 13.6 0.0 0.14 12.4 0.0 1.7 1 1 0 1 1 1 0 PIN domain GATase_4 PF13230.6 gi|330835020|ref|YP_004409748.1| - 8.6e-05 21.6 0.0 0.00012 21.1 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|330835020|ref|YP_004409748.1| - 0.00013 22.2 0.0 0.00018 21.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase domain US10 PF17617.2 gi|330835020|ref|YP_004409748.1| - 0.096 12.8 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Viral unique short region 10 CbiQ PF02361.16 gi|330835021|ref|YP_004409749.1| - 4.2e-07 29.8 21.0 4.2e-07 29.8 21.0 2.5 2 1 0 2 2 2 1 Cobalt transport protein GPR_Gpa2_C PF11970.8 gi|330835021|ref|YP_004409749.1| - 0.033 14.2 0.8 7.6 6.7 0.6 2.7 2 0 0 2 2 2 0 G protein-coupled glucose receptor regulating Gpa2 C-term ABC_tran PF00005.27 gi|330835022|ref|YP_004409750.1| - 1.6e-45 155.0 0.0 2.7e-21 76.5 0.0 2.5 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|330835022|ref|YP_004409750.1| - 4.7e-12 46.3 6.2 0.0041 17.0 0.4 4.1 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|330835022|ref|YP_004409750.1| - 2.7e-11 43.0 0.1 0.00029 20.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|330835022|ref|YP_004409750.1| - 1.3e-09 38.6 0.0 0.0012 19.3 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain RsgA_GTPase PF03193.16 gi|330835022|ref|YP_004409750.1| - 1.6e-09 37.9 0.2 0.0022 17.9 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase SMC_N PF02463.19 gi|330835022|ref|YP_004409750.1| - 2.5e-09 36.9 0.4 0.001 18.5 0.0 4.1 2 2 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330835022|ref|YP_004409750.1| - 4.5e-08 33.8 0.0 0.00012 22.7 0.0 2.5 2 1 0 2 2 2 2 AAA domain MMR_HSR1 PF01926.23 gi|330835022|ref|YP_004409750.1| - 1.4e-06 28.4 0.3 0.13 12.3 0.1 3.5 4 0 0 4 4 3 2 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|330835022|ref|YP_004409750.1| - 3.7e-06 26.9 0.1 0.0003 20.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|330835022|ref|YP_004409750.1| - 7.6e-06 25.9 1.1 0.021 14.7 0.1 2.6 2 0 0 2 2 2 2 NACHT domain AAA_22 PF13401.6 gi|330835022|ref|YP_004409750.1| - 7.8e-06 26.2 0.1 0.052 13.8 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|330835022|ref|YP_004409750.1| - 1.2e-05 25.2 0.1 0.056 13.2 0.0 2.5 2 1 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|330835022|ref|YP_004409750.1| - 3.5e-05 23.1 0.2 0.0042 16.3 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain Mg_chelatase PF01078.21 gi|330835022|ref|YP_004409750.1| - 4e-05 23.1 0.1 0.045 13.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|330835022|ref|YP_004409750.1| - 4.9e-05 23.1 0.1 0.095 12.4 0.0 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation T2SSE PF00437.20 gi|330835022|ref|YP_004409750.1| - 5.2e-05 22.4 0.6 0.27 10.3 0.1 2.5 2 0 0 2 2 2 2 Type II/IV secretion system protein AAA_7 PF12775.7 gi|330835022|ref|YP_004409750.1| - 6.7e-05 22.5 0.1 0.43 10.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_33 PF13671.6 gi|330835022|ref|YP_004409750.1| - 0.00011 22.4 0.1 0.31 11.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain DLIC PF05783.11 gi|330835022|ref|YP_004409750.1| - 0.00013 21.0 0.3 0.1 11.4 0.0 2.2 2 0 0 2 2 2 2 Dynein light intermediate chain (DLIC) AAA_18 PF13238.6 gi|330835022|ref|YP_004409750.1| - 0.00016 22.2 0.1 1.2 9.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain ABC_ATPase PF09818.9 gi|330835022|ref|YP_004409750.1| - 0.00022 20.2 0.1 2.5 6.8 0.0 3.8 4 0 0 4 4 4 1 Predicted ATPase of the ABC class ATP_bind_1 PF03029.17 gi|330835022|ref|YP_004409750.1| - 0.00023 21.0 0.2 2.1 8.1 0.0 3.1 3 0 0 3 3 3 2 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.18 gi|330835022|ref|YP_004409750.1| - 0.00036 20.0 1.0 0.077 12.3 0.0 2.9 3 0 0 3 3 3 1 FtsK/SpoIIIE family AAA_24 PF13479.6 gi|330835022|ref|YP_004409750.1| - 0.0005 19.8 0.1 1.1 8.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA PF00004.29 gi|330835022|ref|YP_004409750.1| - 0.00053 20.4 0.1 0.047 14.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|330835022|ref|YP_004409750.1| - 0.00063 19.7 0.1 0.037 14.0 0.1 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE MobB PF03205.14 gi|330835022|ref|YP_004409750.1| - 0.00069 19.5 0.5 0.065 13.1 0.1 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.14 gi|330835022|ref|YP_004409750.1| - 0.00084 19.4 0.8 2 8.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain (dynein-related subfamily) SbcCD_C PF13558.6 gi|330835022|ref|YP_004409750.1| - 0.00099 19.3 0.0 0.21 11.8 0.0 3.3 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|330835022|ref|YP_004409750.1| - 0.0011 19.2 0.4 0.044 13.9 0.0 2.4 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_25 PF13481.6 gi|330835022|ref|YP_004409750.1| - 0.0011 18.6 0.1 1.8 8.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain G-alpha PF00503.20 gi|330835022|ref|YP_004409750.1| - 0.0011 18.2 0.0 0.31 10.1 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit Pox_A32 PF04665.12 gi|330835022|ref|YP_004409750.1| - 0.0017 17.9 0.1 0.085 12.3 0.0 2.3 2 0 0 2 2 2 1 Poxvirus A32 protein cobW PF02492.19 gi|330835022|ref|YP_004409750.1| - 0.0017 18.0 0.2 0.42 10.2 0.0 2.7 3 0 0 3 3 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.6 gi|330835022|ref|YP_004409750.1| - 0.0018 18.7 0.1 0.71 10.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain Roc PF08477.13 gi|330835022|ref|YP_004409750.1| - 0.0018 18.5 1.3 0.52 10.5 0.0 2.5 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase DUF815 PF05673.13 gi|330835022|ref|YP_004409750.1| - 0.0019 17.4 0.0 0.99 8.5 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF815) RNA_helicase PF00910.22 gi|330835022|ref|YP_004409750.1| - 0.0021 18.4 0.1 2.4 8.6 0.0 2.5 2 0 0 2 2 2 1 RNA helicase ATPase_2 PF01637.18 gi|330835022|ref|YP_004409750.1| - 0.0028 17.6 0.0 0.36 10.7 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|330835022|ref|YP_004409750.1| - 0.0029 16.9 0.1 0.71 9.1 0.0 2.4 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.15 gi|330835022|ref|YP_004409750.1| - 0.0041 17.0 1.0 0.94 9.4 0.1 2.9 3 0 0 3 3 2 1 NTPase ATPase PF06745.13 gi|330835022|ref|YP_004409750.1| - 0.0053 16.1 1.0 2.7 7.3 0.0 3.3 3 0 0 3 3 3 0 KaiC Rad17 PF03215.15 gi|330835022|ref|YP_004409750.1| - 0.0054 16.7 0.0 1 9.2 0.0 2.3 2 0 0 2 2 2 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|330835022|ref|YP_004409750.1| - 0.0059 16.4 0.0 5.2 6.8 0.0 2.7 2 0 0 2 2 2 0 IstB-like ATP binding protein PPK2 PF03976.14 gi|330835022|ref|YP_004409750.1| - 0.0082 15.7 0.0 0.014 14.9 0.0 1.3 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) Septin PF00735.18 gi|330835022|ref|YP_004409750.1| - 0.013 14.8 0.3 0.74 9.0 0.1 2.2 2 0 0 2 2 2 0 Septin AAA_28 PF13521.6 gi|330835022|ref|YP_004409750.1| - 0.016 15.5 0.1 3 8.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain CPT PF07931.12 gi|330835022|ref|YP_004409750.1| - 0.017 15.0 0.2 3.5 7.4 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein PRK PF00485.18 gi|330835022|ref|YP_004409750.1| - 0.021 14.5 0.0 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Gtr1_RagA PF04670.12 gi|330835022|ref|YP_004409750.1| - 0.026 13.9 0.4 5.1 6.4 0.1 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region FeoB_N PF02421.18 gi|330835022|ref|YP_004409750.1| - 0.028 14.0 0.3 5.5 6.5 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B Ploopntkinase3 PF18751.1 gi|330835022|ref|YP_004409750.1| - 0.029 14.3 0.2 24 4.8 0.0 3.3 3 0 0 3 3 3 0 P-loop Nucleotide Kinase3 Sigma54_activat PF00158.26 gi|330835022|ref|YP_004409750.1| - 0.034 13.9 0.1 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain PIF1 PF05970.14 gi|330835022|ref|YP_004409750.1| - 0.044 12.9 0.0 3.5 6.7 0.0 2.3 2 0 0 2 2 2 0 PIF1-like helicase MCM PF00493.23 gi|330835022|ref|YP_004409750.1| - 0.044 12.9 0.2 1.8 7.6 0.1 2.2 2 0 0 2 2 2 0 MCM P-loop domain AAA_27 PF13514.6 gi|330835022|ref|YP_004409750.1| - 0.057 13.0 0.1 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|330835022|ref|YP_004409750.1| - 0.057 13.5 3.8 3.2 7.8 0.7 2.5 2 0 0 2 2 2 0 Dynamin family AAA_14 PF13173.6 gi|330835022|ref|YP_004409750.1| - 0.069 13.2 0.4 2.1 8.4 0.1 3.2 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|330835022|ref|YP_004409750.1| - 0.087 12.3 0.0 4.5 6.7 0.0 2.6 2 0 0 2 2 2 0 PhoH-like protein DUF3584 PF12128.8 gi|330835022|ref|YP_004409750.1| - 0.092 10.2 0.1 0.17 9.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) CbiA PF01656.23 gi|330835022|ref|YP_004409750.1| - 0.13 12.4 5.1 2.8 8.0 0.3 3.2 3 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_13 PF13166.6 gi|330835022|ref|YP_004409750.1| - 0.13 10.8 0.0 2.5 6.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain IIGP PF05049.13 gi|330835022|ref|YP_004409750.1| - 0.14 11.1 0.5 0.78 8.7 0.1 2.0 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) KAP_NTPase PF07693.14 gi|330835022|ref|YP_004409750.1| - 0.17 11.1 0.0 8.5 5.5 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain dNK PF01712.19 gi|330835022|ref|YP_004409750.1| - 0.2 11.5 0.1 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase SRP54 PF00448.22 gi|330835022|ref|YP_004409750.1| - 0.22 11.1 1.1 1.8 8.1 0.2 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AIG1 PF04548.16 gi|330835022|ref|YP_004409750.1| - 0.56 9.5 2.9 2.8 7.2 0.2 2.5 2 1 0 2 2 2 0 AIG1 family Pyr_redox_2 PF07992.14 gi|330835024|ref|YP_004409752.1| - 2.3e-51 174.8 0.3 3e-51 174.4 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330835024|ref|YP_004409752.1| - 6.4e-17 61.8 0.0 4.1e-13 49.3 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835024|ref|YP_004409752.1| - 6.3e-14 52.3 2.4 3.9e-13 49.8 0.1 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330835024|ref|YP_004409752.1| - 9.6e-10 38.7 0.8 3.8e-09 36.8 0.0 2.4 3 1 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 gi|330835024|ref|YP_004409752.1| - 8.6e-09 35.0 5.3 0.00011 21.5 0.4 3.5 3 1 0 3 3 3 3 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|330835024|ref|YP_004409752.1| - 7.8e-07 28.5 1.3 2.3e-05 23.7 0.3 3.0 3 0 0 3 3 3 1 FAD binding domain K_oxygenase PF13434.6 gi|330835024|ref|YP_004409752.1| - 1.5e-06 27.6 0.0 0.0005 19.3 0.0 2.4 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) FAD_oxidored PF12831.7 gi|330835024|ref|YP_004409752.1| - 1.7e-06 27.6 1.6 3.5e-06 26.6 0.1 2.2 2 1 1 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|330835024|ref|YP_004409752.1| - 7.1e-05 22.0 0.1 0.00074 18.7 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 gi|330835024|ref|YP_004409752.1| - 0.00053 19.3 0.6 0.0089 15.3 0.1 2.3 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.14 gi|330835024|ref|YP_004409752.1| - 0.0026 16.5 2.1 0.012 14.3 0.2 2.7 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|330835024|ref|YP_004409752.1| - 0.0038 17.4 4.4 0.0061 16.8 0.3 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|330835024|ref|YP_004409752.1| - 0.014 15.3 0.1 2.2 8.1 0.0 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|330835024|ref|YP_004409752.1| - 0.047 14.1 0.4 15 6.1 0.0 2.6 2 0 0 2 2 2 0 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|330835024|ref|YP_004409752.1| - 0.087 12.1 3.3 0.83 8.8 0.2 2.9 3 0 0 3 3 3 0 FAD binding domain XdhC_C PF13478.6 gi|330835024|ref|YP_004409752.1| - 0.16 12.5 0.0 2.9 8.4 0.0 2.5 2 0 0 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|330835024|ref|YP_004409752.1| - 0.42 10.2 2.9 3.3 7.2 0.3 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Usp PF00582.26 gi|330835025|ref|YP_004409753.1| - 2.1e-24 86.6 1.3 2.3e-24 86.5 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Y_Y_Y PF07495.13 gi|330835025|ref|YP_004409753.1| - 0.076 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Y_Y_Y domain Transposase_1 PF01359.18 gi|330835025|ref|YP_004409753.1| - 0.16 11.8 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Transposase (partial DDE domain) BCA_ABC_TP_C PF12399.8 gi|330835025|ref|YP_004409753.1| - 4.3 7.4 5.6 3.7 7.6 0.3 2.5 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AMP-binding PF00501.28 gi|330835026|ref|YP_004409754.1| - 8.4e-77 258.5 0.0 1.1e-76 258.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330835026|ref|YP_004409754.1| - 3.2e-22 79.3 0.3 5.9e-22 78.4 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Diphthamide_syn PF01866.17 gi|330835026|ref|YP_004409754.1| - 0.0091 15.5 0.0 0.014 14.8 0.0 1.2 1 0 0 1 1 1 1 Putative diphthamide synthesis protein Condensation PF00668.20 gi|330835026|ref|YP_004409754.1| - 0.19 10.4 0.1 0.27 9.9 0.1 1.1 1 0 0 1 1 1 0 Condensation domain HTH_5 PF01022.20 gi|330835027|ref|YP_004409755.1| - 3.9e-16 58.7 5.2 5.3e-16 58.2 2.5 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330835027|ref|YP_004409755.1| - 7.6e-06 25.9 0.3 1.6e-05 24.9 0.2 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|330835027|ref|YP_004409755.1| - 4.7e-05 23.5 0.4 9.3e-05 22.5 0.2 1.6 1 1 1 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|330835027|ref|YP_004409755.1| - 0.00017 21.4 0.1 0.00029 20.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.6 gi|330835027|ref|YP_004409755.1| - 0.0013 18.4 0.2 0.0024 17.6 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|330835027|ref|YP_004409755.1| - 0.0097 16.2 0.1 0.017 15.5 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator HTH_Tnp_Tc3_1 PF11427.8 gi|330835027|ref|YP_004409755.1| - 0.013 15.3 0.8 0.025 14.4 0.8 1.5 1 0 0 1 1 1 0 Tc3 transposase Trp_repressor PF01371.19 gi|330835027|ref|YP_004409755.1| - 0.02 15.0 0.2 0.66 10.1 0.1 2.2 1 1 1 2 2 2 0 Trp repressor protein HTH_24 PF13412.6 gi|330835027|ref|YP_004409755.1| - 0.023 14.3 0.2 0.04 13.5 0.2 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|330835027|ref|YP_004409755.1| - 0.026 14.3 0.1 0.041 13.7 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Penicillinase_R PF03965.16 gi|330835027|ref|YP_004409755.1| - 0.045 14.1 0.1 0.053 13.9 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor LexA_DNA_bind PF01726.16 gi|330835027|ref|YP_004409755.1| - 0.051 13.3 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain SLATT_1 PF18181.1 gi|330835028|ref|YP_004409756.1| - 0.084 12.8 1.5 0.13 12.1 0.1 1.9 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 DUF3488 PF11992.8 gi|330835028|ref|YP_004409756.1| - 0.38 9.6 5.4 0.57 9.1 5.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3488) Macro PF01661.21 gi|330835029|ref|YP_004409757.1| - 2.4e-37 127.6 0.0 2.9e-37 127.3 0.0 1.1 1 0 0 1 1 1 1 Macro domain DUF3197 PF11432.8 gi|330835029|ref|YP_004409757.1| - 0.026 14.4 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) Phosphoesterase PF04185.14 gi|330835030|ref|YP_004409758.1| - 1.3e-70 238.4 1.4 1.6e-70 238.1 1.4 1.1 1 0 0 1 1 1 1 Phosphoesterase family BacA PF02673.18 gi|330835031|ref|YP_004409759.1| - 1.4e-47 162.6 20.4 1.6e-47 162.4 20.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA Linocin_M18 PF04454.12 gi|330835032|ref|YP_004409760.1| - 6.7e-26 91.1 0.0 9.4e-26 90.6 0.0 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase IF-2B PF01008.17 gi|330835033|ref|YP_004409761.1| - 1.8e-74 250.5 0.0 2.2e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Na_H_Exchanger PF00999.21 gi|330835034|ref|YP_004409762.1| - 1.1e-42 146.2 48.7 1.4e-42 145.9 48.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2499 PF10693.9 gi|330835034|ref|YP_004409762.1| - 0.062 13.6 0.0 0.21 11.9 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF2499) MS_channel PF00924.18 gi|330835035|ref|YP_004409763.1| - 2.6e-40 138.2 7.0 2.6e-40 138.2 7.0 1.3 2 0 0 2 2 2 1 Mechanosensitive ion channel NiFe_hyd_3_EhaA PF17367.2 gi|330835035|ref|YP_004409763.1| - 0.95 9.6 7.3 2.1 8.5 7.3 1.6 1 0 0 1 1 1 0 NiFe-hydrogenase-type-3 Eha complex subunit A DUF432 PF04254.13 gi|330835036|ref|YP_004409764.1| - 3.1e-28 98.4 0.3 4.2e-28 98.0 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) Peptidase_M48 PF01435.18 gi|330835037|ref|YP_004409765.1| - 0.0076 16.0 0.0 0.009 15.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M48 PF01435.18 gi|330835038|ref|YP_004409766.1| - 1.5e-10 41.2 0.2 1.9e-10 40.8 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M48 Zn_peptidase_2 PF04298.12 gi|330835038|ref|YP_004409766.1| - 0.009 15.4 2.7 0.011 15.1 2.7 1.1 1 0 0 1 1 1 1 Putative neutral zinc metallopeptidase CCSMST1 PF15013.6 gi|330835038|ref|YP_004409766.1| - 0.3 11.3 0.6 0.54 10.5 0.6 1.3 1 0 0 1 1 1 0 CCSMST1 family SLATT_6 PF18169.1 gi|330835038|ref|YP_004409766.1| - 1.3 8.6 3.5 4.3 6.9 3.5 1.8 1 1 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 6 MFS_1 PF07690.16 gi|330835039|ref|YP_004409767.1| - 2.2e-24 86.1 54.3 1.8e-23 83.0 30.0 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835039|ref|YP_004409767.1| - 8.8e-16 57.8 28.5 2.9e-15 56.1 6.5 2.1 1 1 0 2 2 2 2 Sugar (and other) transporter Sec62 PF03839.16 gi|330835039|ref|YP_004409767.1| - 6.9 6.1 5.8 22 4.5 5.8 1.8 1 0 0 1 1 1 0 Translocation protein Sec62 DUF35_N PF12172.8 gi|330835040|ref|YP_004409768.1| - 5.4e-08 32.6 1.4 7.5e-08 32.1 1.4 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|330835040|ref|YP_004409768.1| - 0.0026 17.5 1.1 0.0034 17.1 1.1 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 OB_aCoA_assoc PF01796.17 gi|330835040|ref|YP_004409768.1| - 0.0029 17.6 0.3 0.016 15.2 0.3 2.0 1 1 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated HypA PF01155.19 gi|330835040|ref|YP_004409768.1| - 0.0053 16.8 0.2 0.0077 16.2 0.2 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FdhE PF04216.12 gi|330835040|ref|YP_004409768.1| - 0.01 15.8 0.3 0.012 15.5 0.3 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation Spt4 PF06093.13 gi|330835040|ref|YP_004409768.1| - 0.029 14.5 0.1 0.037 14.1 0.1 1.3 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Sgf11 PF08209.11 gi|330835040|ref|YP_004409768.1| - 0.065 12.8 0.4 0.065 12.8 0.4 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) TF_Zn_Ribbon PF08271.12 gi|330835040|ref|YP_004409768.1| - 0.067 12.7 2.3 0.3 10.6 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding DUF779 PF05610.11 gi|330835040|ref|YP_004409768.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF779) Thiolase_C PF02803.18 gi|330835041|ref|YP_004409769.1| - 0.00014 21.5 0.1 0.001 18.7 0.0 2.2 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|330835041|ref|YP_004409769.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.4 1 1 0 1 1 1 0 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|330835041|ref|YP_004409769.1| - 0.17 11.8 0.0 0.37 10.7 0.0 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III adh_short_C2 PF13561.6 gi|330835042|ref|YP_004409770.1| - 2.2e-64 217.2 0.0 2.6e-64 217.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330835042|ref|YP_004409770.1| - 3.1e-54 183.4 0.1 3.8e-54 183.1 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330835042|ref|YP_004409770.1| - 1.9e-16 60.5 0.1 2.7e-16 60.0 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|330835042|ref|YP_004409770.1| - 2.7e-05 23.8 0.1 6e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|330835042|ref|YP_004409770.1| - 0.0015 18.5 0.0 0.0019 18.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding PolyA_pol PF01743.20 gi|330835042|ref|YP_004409770.1| - 0.02 15.3 0.0 0.096 13.1 0.0 2.1 1 1 0 1 1 1 0 Poly A polymerase head domain IU_nuc_hydro PF01156.19 gi|330835043|ref|YP_004409771.1| - 4.1e-73 246.6 0.0 4.7e-73 246.4 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase Rieske PF00355.26 gi|330835044|ref|YP_004409772.1| - 1.4e-12 47.4 0.1 1.5e-12 47.2 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|330835044|ref|YP_004409772.1| - 4.1e-09 36.3 0.0 4.8e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain MFS_1 PF07690.16 gi|330835045|ref|YP_004409773.1| - 2.2e-39 135.4 42.4 2.2e-39 135.4 42.4 2.8 2 1 0 2 2 2 1 Major Facilitator Superfamily OATP PF03137.20 gi|330835045|ref|YP_004409773.1| - 9.1e-08 30.8 12.5 0.00064 18.1 0.9 3.4 2 1 1 3 3 3 3 Organic Anion Transporter Polypeptide (OATP) family Sugar_tr PF00083.24 gi|330835045|ref|YP_004409773.1| - 1.6e-07 30.6 8.4 1.6e-07 30.6 8.4 3.3 2 2 1 3 3 3 2 Sugar (and other) transporter CrgA PF06781.12 gi|330835045|ref|YP_004409773.1| - 0.19 11.8 5.7 3.8 7.6 1.3 3.5 2 1 1 3 3 3 0 Cell division protein CrgA DUF973 PF06157.11 gi|330835046|ref|YP_004409774.1| - 3.9e-38 131.3 21.7 3.2e-33 115.1 9.3 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF973) Yip1 PF04893.17 gi|330835046|ref|YP_004409774.1| - 0.03 14.1 14.7 0.05 13.3 14.7 1.3 1 0 0 1 1 1 0 Yip1 domain POR PF01558.18 gi|330835046|ref|YP_004409774.1| - 0.11 12.6 0.0 0.18 11.9 0.0 1.3 1 0 0 1 1 1 0 Pyruvate ferredoxin/flavodoxin oxidoreductase HpaB_N PF11794.8 gi|330835047|ref|YP_004409775.1| - 3.4e-72 243.4 0.0 5.5e-72 242.7 0.0 1.3 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|330835047|ref|YP_004409775.1| - 3.9e-49 166.5 0.0 6.9e-49 165.7 0.0 1.4 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal PAS_3 PF08447.12 gi|330835047|ref|YP_004409775.1| - 0.025 14.9 0.1 0.062 13.6 0.1 1.6 1 0 0 1 1 1 0 PAS fold Glyoxalase PF00903.25 gi|330835048|ref|YP_004409776.1| - 1.8e-19 70.2 0.2 3.1e-09 37.1 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|330835048|ref|YP_004409776.1| - 9.1e-07 29.1 0.0 0.0059 16.9 0.0 3.3 2 1 1 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|330835048|ref|YP_004409776.1| - 0.024 14.7 0.4 2.2 8.4 0.0 2.5 2 1 0 2 2 2 0 Glyoxalase-like domain Flavin_Reduct PF01613.18 gi|330835049|ref|YP_004409777.1| - 2.6e-26 92.5 0.0 2.9e-26 92.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain NPH-II PF12011.8 gi|330835049|ref|YP_004409777.1| - 0.012 15.5 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase NPH-II Sugar_tr PF00083.24 gi|330835050|ref|YP_004409778.1| - 9.7e-43 146.7 13.1 1.4e-42 146.2 13.1 1.3 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330835050|ref|YP_004409778.1| - 5.1e-26 91.4 59.3 1.5e-18 66.9 24.4 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|330835050|ref|YP_004409778.1| - 2.3e-07 29.5 13.4 4e-07 28.7 2.3 2.7 2 1 1 3 3 3 2 Organic Anion Transporter Polypeptide (OATP) family MFS_4 PF06779.14 gi|330835050|ref|YP_004409778.1| - 1.3e-05 24.6 2.7 1.3e-05 24.6 2.7 2.6 2 1 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB DUF485 PF04341.12 gi|330835050|ref|YP_004409778.1| - 1.9 8.5 10.4 1.2 9.1 0.3 3.5 3 0 0 3 3 3 0 Protein of unknown function, DUF485 DUF3938 PF13074.6 gi|330835050|ref|YP_004409778.1| - 6.1 7.2 11.4 0.2 11.9 0.7 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF3938) HTH_10 PF04967.12 gi|330835051|ref|YP_004409779.1| - 1.6e-18 66.2 0.0 3.3e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain ADC PF06314.11 gi|330835052|ref|YP_004409780.1| - 4.1e-52 177.1 0.1 4.9e-52 176.8 0.1 1.0 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Glyco_hydro_15 PF00723.21 gi|330835053|ref|YP_004409781.1| - 1.9e-47 162.1 0.1 3.5e-45 154.6 0.1 2.6 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.6 gi|330835053|ref|YP_004409781.1| - 1.3e-06 28.8 0.9 0.0008 19.9 0.0 3.3 3 0 0 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|330835053|ref|YP_004409781.1| - 0.091 13.4 0.5 15 6.6 0.0 3.3 2 0 0 2 2 2 0 Tetratricopeptide repeat AAA_31 PF13614.6 gi|330835054|ref|YP_004409782.1| - 0.0031 17.5 0.0 0.0085 16.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF4882 PF16223.5 gi|330835054|ref|YP_004409782.1| - 0.052 12.8 0.5 0.3 10.3 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4882) Amidohydro_2 PF04909.14 gi|330835056|ref|YP_004409784.1| - 3.7e-26 92.6 0.0 4.3e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase His_Phos_1 PF00300.22 gi|330835057|ref|YP_004409785.1| - 3.8e-14 52.8 0.0 1.8e-13 50.6 0.0 1.8 2 0 0 2 2 2 1 Histidine phosphatase superfamily (branch 1) V-SNARE PF05008.15 gi|330835057|ref|YP_004409785.1| - 0.99 9.8 3.7 5.7 7.4 0.2 2.5 2 1 1 3 3 3 0 Vesicle transport v-SNARE protein N-terminus Ppx-GppA PF02541.16 gi|330835058|ref|YP_004409786.1| - 2.9e-37 128.7 0.0 3.9e-37 128.2 0.0 1.1 1 0 0 1 1 1 1 Ppx/GppA phosphatase family HHH_8 PF14716.6 gi|330835058|ref|YP_004409786.1| - 0.031 14.6 0.0 0.08 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain Thymidylate_kin PF02223.17 gi|330835059|ref|YP_004409787.1| - 1.4e-24 86.8 0.0 3.1e-24 85.7 0.0 1.5 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|330835059|ref|YP_004409787.1| - 0.00098 19.0 0.2 0.0049 16.7 0.2 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|330835059|ref|YP_004409787.1| - 0.0026 18.3 0.0 0.014 16.0 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|330835059|ref|YP_004409787.1| - 0.051 14.0 0.0 0.62 10.5 0.0 2.6 2 1 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|330835060|ref|YP_004409788.1| - 2.4e-10 40.4 0.0 7.3e-10 38.8 0.0 1.7 1 1 0 1 1 1 1 Thymidylate kinase CHAD PF05235.14 gi|330835061|ref|YP_004409789.1| - 7.6e-06 26.1 2.1 0.0036 17.3 0.3 2.2 1 1 0 2 2 2 2 CHAD domain P5CR_dimer PF14748.6 gi|330835062|ref|YP_004409790.1| - 4.5e-30 103.9 0.0 7.9e-30 103.2 0.0 1.4 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|330835062|ref|YP_004409790.1| - 4e-17 62.6 0.2 1.5e-16 60.8 0.1 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|330835062|ref|YP_004409790.1| - 5.4e-06 26.7 0.1 1.2e-05 25.5 0.1 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|330835062|ref|YP_004409790.1| - 0.00017 21.2 0.3 0.00092 18.9 0.3 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|330835062|ref|YP_004409790.1| - 0.00052 19.9 0.8 0.0016 18.4 0.2 2.1 2 1 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|330835062|ref|YP_004409790.1| - 0.0014 18.7 2.2 0.062 13.3 1.3 2.9 2 1 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|330835062|ref|YP_004409790.1| - 0.0015 18.0 0.0 0.003 17.0 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|330835062|ref|YP_004409790.1| - 0.0026 17.1 0.1 0.0043 16.4 0.1 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain PDH PF02153.17 gi|330835062|ref|YP_004409790.1| - 0.0036 16.3 0.1 0.0073 15.3 0.0 1.5 2 0 0 2 2 2 1 Prephenate dehydrogenase ADH_zinc_N PF00107.26 gi|330835062|ref|YP_004409790.1| - 0.0055 16.7 0.1 0.023 14.7 0.0 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase adh_short PF00106.25 gi|330835062|ref|YP_004409790.1| - 0.082 12.4 0.1 0.18 11.2 0.1 1.6 2 0 0 2 2 2 0 short chain dehydrogenase Hjc PF01870.18 gi|330835063|ref|YP_004409791.1| - 2.4e-26 91.5 0.0 4.5e-26 90.7 0.0 1.4 2 0 0 2 2 2 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|330835063|ref|YP_004409791.1| - 3.6e-06 26.5 0.1 6.8e-05 22.4 0.1 2.1 1 1 0 1 1 1 1 REase_AHJR-like Mrr_cat PF04471.12 gi|330835063|ref|YP_004409791.1| - 0.042 13.9 0.0 0.053 13.6 0.0 1.3 1 1 0 1 1 1 0 Restriction endonuclease CBS PF00571.28 gi|330835064|ref|YP_004409792.1| - 9.1e-13 48.4 0.5 4.8e-05 23.7 0.1 2.1 2 0 0 2 2 2 2 CBS domain DRTGG PF07085.12 gi|330835064|ref|YP_004409792.1| - 0.036 13.9 0.1 0.3 10.9 0.0 2.0 1 1 1 2 2 2 0 DRTGG domain malic PF00390.19 gi|330835064|ref|YP_004409792.1| - 0.078 12.8 0.1 0.39 10.5 0.1 1.9 2 0 0 2 2 2 0 Malic enzyme, N-terminal domain MFS_1 PF07690.16 gi|330835065|ref|YP_004409793.1| - 3.7e-10 39.2 12.3 3.7e-10 39.2 12.3 1.5 2 0 0 2 2 2 1 Major Facilitator Superfamily DUF2975 PF11188.8 gi|330835065|ref|YP_004409793.1| - 0.18 11.7 9.2 0.4 10.6 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) TMEM65 PF10507.9 gi|330835065|ref|YP_004409793.1| - 0.24 11.3 4.4 0.18 11.7 1.2 2.2 1 1 1 2 2 2 0 Transmembrane protein 65 CbiA PF01656.23 gi|330835067|ref|YP_004409795.1| - 7.8e-15 55.1 0.0 1.1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330835067|ref|YP_004409795.1| - 1.8e-10 41.0 0.0 3.4e-10 40.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|330835067|ref|YP_004409795.1| - 8e-10 38.6 0.6 8e-10 38.6 0.6 2.0 3 0 0 3 3 3 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330835067|ref|YP_004409795.1| - 0.00014 21.2 0.1 0.00014 21.2 0.1 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.11 gi|330835067|ref|YP_004409795.1| - 0.0037 16.6 0.0 0.0063 15.8 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|330835067|ref|YP_004409795.1| - 0.0045 16.5 0.4 0.017 14.6 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|330835067|ref|YP_004409795.1| - 0.011 15.2 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|330835067|ref|YP_004409795.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.6 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|330835067|ref|YP_004409795.1| - 0.058 13.3 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AIRS_C PF02769.22 gi|330835069|ref|YP_004409797.1| - 6.5e-19 68.6 0.1 9.9e-19 68.0 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|330835069|ref|YP_004409797.1| - 8.4e-12 45.6 0.0 1.3e-11 44.9 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain HEPN_DZIP3 PF18738.1 gi|330835069|ref|YP_004409797.1| - 0.13 12.0 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 DZIP3/ hRUL138-like HEPN DDE_Tnp_Tn3 PF01526.17 gi|330835070|ref|YP_004409798.1| - 0.037 12.8 0.0 0.08 11.7 0.0 1.4 2 0 0 2 2 2 0 Tn3 transposase DDE domain PIRT PF15099.6 gi|330835070|ref|YP_004409798.1| - 2.7 7.6 4.9 2.8 7.5 0.8 2.1 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family Neurensin PF14927.6 gi|330835070|ref|YP_004409798.1| - 4.6 7.0 8.3 0.62 9.8 3.6 1.9 2 1 0 2 2 2 0 Neurensin DUF2371 PF10177.9 gi|330835070|ref|YP_004409798.1| - 4.9 7.3 5.7 1.2 9.3 0.8 2.1 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2371) Alpha-amylase PF00128.24 gi|330835071|ref|YP_004409799.1| - 7.3e-32 111.2 0.4 1.9e-21 77.0 0.0 3.1 2 1 1 3 3 3 3 Alpha amylase, catalytic domain Alpha-amyl_C PF09071.10 gi|330835071|ref|YP_004409799.1| - 1.3e-10 40.9 0.0 2.7e-10 39.9 0.0 1.6 1 0 0 1 1 1 1 Alpha-amylase, C terminal CBM_48 PF02922.18 gi|330835071|ref|YP_004409799.1| - 0.046 14.1 0.0 0.15 12.4 0.0 1.9 2 0 0 2 2 2 0 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CBM_48 PF02922.18 gi|330835072|ref|YP_004409800.1| - 1.3e-22 80.0 0.2 4.4e-22 78.2 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 gi|330835072|ref|YP_004409800.1| - 6.4e-18 65.4 0.5 1.1e-12 48.3 0.3 3.2 2 1 0 2 2 2 2 Alpha amylase, catalytic domain GlgX_C PF18390.1 gi|330835072|ref|YP_004409800.1| - 0.027 14.3 0.1 1.3 8.9 0.0 2.6 1 1 1 2 2 2 0 Glycogen debranching enzyme C-terminal domain GHL5 PF14872.6 gi|330835072|ref|YP_004409800.1| - 0.031 12.3 0.0 0.047 11.7 0.0 1.2 1 0 0 1 1 1 0 Hypothetical glycoside hydrolase 5 Glyco_hydro_114 PF03537.13 gi|330835072|ref|YP_004409800.1| - 0.085 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Alpha-amylase_C PF02806.18 gi|330835072|ref|YP_004409800.1| - 0.099 13.1 0.0 0.29 11.6 0.0 1.8 1 0 0 1 1 1 0 Alpha amylase, C-terminal all-beta domain Alpha-amylase PF00128.24 gi|330835073|ref|YP_004409801.1| - 4.9e-22 78.9 1.7 1.6e-19 70.7 0.1 3.8 2 2 0 3 3 3 2 Alpha amylase, catalytic domain Glyco_hydro_31 PF01055.26 gi|330835074|ref|YP_004409802.1| - 2.6e-132 442.1 0.0 3.2e-132 441.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|330835074|ref|YP_004409802.1| - 4.6e-18 65.3 0.1 1.7e-17 63.5 0.0 2.0 2 0 0 2 2 2 1 Galactose mutarotase-like GHL15 PF14885.6 gi|330835074|ref|YP_004409802.1| - 0.21 11.5 0.1 0.5 10.3 0.0 1.6 2 0 0 2 2 2 0 Hypothetical glycosyl hydrolase family 15 MFS_1 PF07690.16 gi|330835075|ref|YP_004409803.1| - 9.4e-54 182.7 48.8 2.1e-51 174.9 39.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835075|ref|YP_004409803.1| - 5.3e-10 38.7 34.5 1.6e-09 37.2 11.2 3.3 3 1 0 3 3 3 2 Sugar (and other) transporter ThiC_Rad_SAM PF01964.18 gi|330835076|ref|YP_004409804.1| - 1.1e-176 587.8 0.0 1.3e-176 587.5 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family ADH_N PF08240.12 gi|330835077|ref|YP_004409805.1| - 3.8e-25 87.9 1.6 7e-25 87.0 0.4 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330835077|ref|YP_004409805.1| - 3.8e-18 65.7 0.9 7.6e-18 64.7 0.9 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330835077|ref|YP_004409805.1| - 2.8e-08 34.9 0.4 4e-07 31.1 0.0 2.2 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|330835077|ref|YP_004409805.1| - 0.0018 18.1 0.8 0.0027 17.5 0.7 1.4 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DapB_N PF01113.20 gi|330835077|ref|YP_004409805.1| - 0.0077 16.4 1.3 0.74 9.9 0.4 2.3 1 1 1 2 2 2 2 Dihydrodipicolinate reductase, N-terminus AlaDh_PNT_C PF01262.21 gi|330835077|ref|YP_004409805.1| - 0.021 14.1 2.1 0.034 13.5 2.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1244 PF06844.11 gi|330835077|ref|YP_004409805.1| - 0.026 14.7 0.0 0.061 13.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1244) Rhodanese PF00581.20 gi|330835077|ref|YP_004409805.1| - 0.027 15.0 0.0 0.31 11.6 0.0 2.3 2 0 0 2 2 2 0 Rhodanese-like domain DsbC PF11412.8 gi|330835078|ref|YP_004409806.1| - 0.042 13.9 0.0 0.055 13.5 0.0 1.1 1 0 0 1 1 1 0 Disulphide bond corrector protein DsbC Cation_efflux PF01545.21 gi|330835079|ref|YP_004409807.1| - 7.2e-17 61.8 19.6 9.7e-17 61.3 19.6 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|330835079|ref|YP_004409807.1| - 0.0055 16.8 1.4 0.0098 16.0 1.4 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter FUSC_2 PF13515.6 gi|330835079|ref|YP_004409807.1| - 0.0072 16.4 2.2 0.0072 16.4 2.2 2.3 2 0 0 2 2 2 1 Fusaric acid resistance protein-like SUR7 PF06687.12 gi|330835079|ref|YP_004409807.1| - 0.012 15.3 4.2 0.08 12.6 0.0 2.6 1 1 1 2 2 2 0 SUR7/PalI family SLATT_4 PF18186.1 gi|330835079|ref|YP_004409807.1| - 0.022 14.4 0.4 0.073 12.7 0.1 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain family 4 DUF4514 PF14986.6 gi|330835079|ref|YP_004409807.1| - 1.3 9.1 8.4 0.13 12.2 3.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) DUF4231 PF14015.6 gi|330835079|ref|YP_004409807.1| - 2.6 8.6 10.8 4.6 7.8 3.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF4231) UPF0154 PF03672.13 gi|330835079|ref|YP_004409807.1| - 3.7 7.7 5.5 1.4 9.0 0.8 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) DUF973 PF06157.11 gi|330835080|ref|YP_004409808.1| - 7.1e-34 117.2 27.9 8.5e-34 117.0 27.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF973) CopD PF05425.13 gi|330835080|ref|YP_004409808.1| - 0.62 10.5 7.4 1.5 9.3 1.1 2.3 2 0 0 2 2 2 0 Copper resistance protein D TPR_6 PF13174.6 gi|330835081|ref|YP_004409809.1| - 0.14 12.8 0.1 0.25 12.1 0.1 1.4 1 0 0 1 1 1 0 Tetratricopeptide repeat AIM24 PF01987.17 gi|330835083|ref|YP_004409811.1| - 6.4e-50 169.7 1.1 7.3e-50 169.6 1.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 TusA PF01206.17 gi|330835084|ref|YP_004409812.1| - 8.2e-15 54.4 0.3 9.3e-15 54.2 0.3 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|330835084|ref|YP_004409812.1| - 0.002 17.9 0.0 0.0027 17.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) Cupin_2 PF07883.11 gi|330835085|ref|YP_004409813.1| - 8e-15 54.3 0.1 1.2e-14 53.8 0.1 1.3 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|330835085|ref|YP_004409813.1| - 2.5e-09 37.2 0.2 2.9e-09 37.0 0.2 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_1 PF00190.22 gi|330835085|ref|YP_004409813.1| - 2.2e-07 30.6 0.0 2.5e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|330835085|ref|YP_004409813.1| - 0.0018 18.2 0.1 0.0022 17.9 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|330835085|ref|YP_004409813.1| - 0.076 13.2 0.1 0.09 13.0 0.1 1.1 1 0 0 1 1 1 0 Ectoine synthase Staphostatin_B PF09023.10 gi|330835085|ref|YP_004409813.1| - 0.081 13.0 0.9 2 8.5 0.2 2.0 1 1 1 2 2 2 0 Staphostatin B Cupin_3 PF05899.12 gi|330835085|ref|YP_004409813.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_7 PF12973.7 gi|330835085|ref|YP_004409813.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 ChrR Cupin-like domain Asp_Arg_Hydrox PF05118.15 gi|330835085|ref|YP_004409813.1| - 0.11 12.3 0.1 0.21 11.4 0.1 1.5 1 1 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Thioredoxin PF00085.20 gi|330835087|ref|YP_004409815.1| - 2.3e-26 91.8 0.0 3.2e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|330835087|ref|YP_004409815.1| - 3.3e-08 33.9 0.5 3e-06 27.6 0.1 2.5 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|330835087|ref|YP_004409815.1| - 7.5e-07 29.4 0.1 0.0061 16.9 0.0 2.8 2 1 1 3 3 3 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|330835087|ref|YP_004409815.1| - 5.4e-06 26.2 0.2 1.6e-05 24.7 0.2 1.7 1 1 0 1 1 1 1 Thioredoxin Phosducin PF02114.16 gi|330835087|ref|YP_004409815.1| - 2e-05 23.7 0.0 2.6e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Phosducin AhpC-TSA PF00578.21 gi|330835087|ref|YP_004409815.1| - 7.4e-05 22.7 0.1 0.035 14.0 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA family OST3_OST6 PF04756.13 gi|330835087|ref|YP_004409815.1| - 0.00034 20.1 0.0 0.00046 19.6 0.0 1.2 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family HyaE PF07449.11 gi|330835087|ref|YP_004409815.1| - 0.00056 19.9 0.0 0.0015 18.5 0.0 1.7 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Redoxin PF08534.10 gi|330835087|ref|YP_004409815.1| - 0.0017 18.1 0.0 0.01 15.6 0.0 1.9 1 1 1 2 2 2 1 Redoxin Thioredoxin_3 PF13192.6 gi|330835087|ref|YP_004409815.1| - 0.003 17.6 0.1 0.015 15.3 0.0 2.0 1 1 1 2 2 2 1 Thioredoxin domain DUF2456 PF10445.9 gi|330835087|ref|YP_004409815.1| - 0.013 15.6 0.0 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2456) Arg_repressor PF01316.21 gi|330835087|ref|YP_004409815.1| - 0.099 12.4 0.1 0.16 11.8 0.1 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain TraF PF13728.6 gi|330835087|ref|YP_004409815.1| - 0.099 12.4 0.0 0.6 9.9 0.0 2.1 1 1 0 1 1 1 0 F plasmid transfer operon protein tRNA_deacylase PF04414.12 gi|330835089|ref|YP_004409817.1| - 1e-48 165.6 0.0 1.2e-48 165.4 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase His_Phos_1 PF00300.22 gi|330835090|ref|YP_004409818.1| - 8.9e-37 126.7 0.0 1.1e-36 126.4 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) Metallophos_2 PF12850.7 gi|330835091|ref|YP_004409819.1| - 8.5e-05 22.8 0.0 0.009 16.2 0.1 2.5 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330835091|ref|YP_004409819.1| - 0.00028 21.5 1.3 0.0024 18.4 1.3 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|330835091|ref|YP_004409819.1| - 0.028 13.8 0.1 0.052 12.9 0.1 1.5 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily SSURE PF11966.8 gi|330835091|ref|YP_004409819.1| - 0.099 12.4 0.2 0.18 11.6 0.2 1.4 1 0 0 1 1 1 0 Fibronectin-binding repeat CBS PF00571.28 gi|330835092|ref|YP_004409820.1| - 2.7e-29 101.4 4.6 6.5e-16 58.5 0.2 2.1 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|330835092|ref|YP_004409820.1| - 0.0034 17.6 2.4 2.7 8.3 2.1 3.0 2 1 0 2 2 2 2 Translation initiation factor IF-3, N-terminal domain Rad50_zn_hook PF04423.14 gi|330835092|ref|YP_004409820.1| - 0.015 15.2 0.0 0.031 14.1 0.0 1.5 1 0 0 1 1 1 0 Rad50 zinc hook motif DUF3659 PF12396.8 gi|330835092|ref|YP_004409820.1| - 0.048 13.6 2.0 1 9.3 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3659) PRC PF05239.16 gi|330835092|ref|YP_004409820.1| - 0.053 13.6 0.6 3.7 7.7 0.1 2.4 2 0 0 2 2 2 0 PRC-barrel domain AAA_23 PF13476.6 gi|330835094|ref|YP_004409822.1| - 0.00049 20.6 68.2 45 4.5 49.2 4.6 1 1 1 2 2 2 0 AAA domain SMC_N PF02463.19 gi|330835094|ref|YP_004409822.1| - 0.0066 15.9 29.2 0.33 10.4 26.4 2.8 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain FlxA PF14282.6 gi|330835094|ref|YP_004409822.1| - 0.007 16.3 0.9 0.007 16.3 0.9 4.4 2 2 2 4 4 4 1 FlxA-like protein GAS PF13851.6 gi|330835094|ref|YP_004409822.1| - 0.75 9.1 57.0 0.085 12.2 9.5 4.7 2 2 1 4 4 4 0 Growth-arrest specific micro-tubule binding FPP PF05911.11 gi|330835094|ref|YP_004409822.1| - 1 7.5 50.3 0.09 11.0 18.5 2.1 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil kleA_kleC PF17383.2 gi|330835094|ref|YP_004409822.1| - 1.4 9.3 11.6 1 9.7 1.2 3.7 3 0 0 3 3 3 0 Uncharacterized KorC regulated protein A IU_nuc_hydro PF01156.19 gi|330835095|ref|YP_004409823.1| - 1.3e-61 208.9 0.0 1.4e-61 208.7 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase FUR PF01475.19 gi|330835096|ref|YP_004409824.1| - 2.6e-22 79.2 0.0 3e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_32 PF13565.6 gi|330835096|ref|YP_004409824.1| - 0.0046 17.5 0.0 0.0082 16.7 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Penicillinase_R PF03965.16 gi|330835096|ref|YP_004409824.1| - 0.0047 17.3 0.0 0.011 16.1 0.0 1.6 1 1 1 2 2 2 1 Penicillinase repressor PadR PF03551.14 gi|330835096|ref|YP_004409824.1| - 0.0063 16.5 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|330835096|ref|YP_004409824.1| - 0.01 15.8 0.1 0.33 10.9 0.0 2.5 1 1 1 2 2 2 0 HTH domain MarR PF01047.22 gi|330835096|ref|YP_004409824.1| - 0.015 15.2 0.0 0.042 13.8 0.0 1.7 2 0 0 2 2 2 0 MarR family HxlR PF01638.17 gi|330835096|ref|YP_004409824.1| - 0.018 14.9 0.0 0.029 14.2 0.0 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|330835096|ref|YP_004409824.1| - 0.02 15.0 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|330835096|ref|YP_004409824.1| - 0.027 14.3 0.0 0.062 13.2 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_CodY PF08222.11 gi|330835096|ref|YP_004409824.1| - 0.069 12.7 0.1 0.25 10.9 0.0 1.9 1 1 0 1 1 1 0 CodY helix-turn-helix domain HTH_5 PF01022.20 gi|330835096|ref|YP_004409824.1| - 0.13 12.1 0.0 1.7 8.6 0.0 2.4 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|330835096|ref|YP_004409824.1| - 0.16 11.6 0.0 0.32 10.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CBS PF00571.28 gi|330835097|ref|YP_004409825.1| - 1.4e-44 150.3 13.3 2.7e-14 53.3 1.0 4.1 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|330835097|ref|YP_004409825.1| - 0.005 17.1 2.3 13 6.1 0.0 4.2 3 2 0 4 4 4 2 Translation initiation factor IF-3, N-terminal domain Ribosomal_L9_C PF03948.14 gi|330835097|ref|YP_004409825.1| - 0.0088 16.5 0.3 2.9 8.4 0.0 3.2 3 0 0 3 3 3 1 Ribosomal protein L9, C-terminal domain Peripla_BP_1 PF00532.21 gi|330835097|ref|YP_004409825.1| - 0.063 12.7 0.0 1.5 8.2 0.0 2.1 2 0 0 2 2 2 0 Periplasmic binding proteins and sugar binding domain of LacI family Alk_phosphatase PF00245.20 gi|330835097|ref|YP_004409825.1| - 0.064 12.2 0.5 1.3 7.9 0.0 2.1 1 1 1 2 2 2 0 Alkaline phosphatase RPA PF10134.9 gi|330835098|ref|YP_004409826.1| - 0.019 14.4 0.1 0.02 14.4 0.1 1.2 1 0 0 1 1 1 0 Replication initiator protein A Methyltransf_11 PF08241.12 gi|330835099|ref|YP_004409827.1| - 3e-08 34.2 0.0 4.9e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330835099|ref|YP_004409827.1| - 0.0046 17.6 0.0 0.015 16.0 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain NurA PF09376.10 gi|330835100|ref|YP_004409828.1| - 1.9e-31 109.6 0.4 2.9e-31 109.0 0.4 1.3 1 0 0 1 1 1 1 NurA domain BTG PF07742.12 gi|330835100|ref|YP_004409828.1| - 0.14 12.1 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 BTG family SMC_N PF02463.19 gi|330835101|ref|YP_004409829.1| - 1.1e-17 64.2 38.5 4.1e-17 62.4 38.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|330835101|ref|YP_004409829.1| - 6.5e-13 49.2 21.9 2.3e-06 27.6 0.1 3.7 3 1 1 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330835101|ref|YP_004409829.1| - 8.6e-13 48.7 53.1 2.1e-05 24.4 5.7 3.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_13 PF13166.6 gi|330835101|ref|YP_004409829.1| - 3e-10 39.4 65.5 8.1e-06 24.8 16.7 4.9 1 1 3 5 5 4 3 AAA domain Rad50_zn_hook PF04423.14 gi|330835101|ref|YP_004409829.1| - 7.3e-08 32.1 0.3 7.3e-08 32.1 0.3 7.1 7 1 3 10 10 9 1 Rad50 zinc hook motif AAA_29 PF13555.6 gi|330835101|ref|YP_004409829.1| - 3.3e-07 29.9 0.0 6.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Spc7 PF08317.11 gi|330835101|ref|YP_004409829.1| - 4.4e-05 22.5 42.0 0.00015 20.8 14.5 6.0 3 2 3 6 6 6 3 Spc7 kinetochore protein SbcCD_C PF13558.6 gi|330835101|ref|YP_004409829.1| - 7.4e-05 22.9 0.0 0.00021 21.5 0.0 1.8 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_27 PF13514.6 gi|330835101|ref|YP_004409829.1| - 0.0001 22.0 0.0 0.0001 22.0 0.0 6.0 4 2 1 6 6 6 1 AAA domain AAA_23 PF13476.6 gi|330835101|ref|YP_004409829.1| - 0.00021 21.9 115.2 1.8e+04 -6.1 18.8 6.5 1 1 1 2 2 0 0 AAA domain Tropomyosin_1 PF12718.7 gi|330835101|ref|YP_004409829.1| - 0.0006 20.0 23.5 0.0006 20.0 23.5 6.7 2 2 3 5 5 4 2 Tropomyosin like RsgA_GTPase PF03193.16 gi|330835101|ref|YP_004409829.1| - 0.0007 19.5 0.1 0.0007 19.5 0.1 3.5 4 2 2 6 6 6 1 RsgA GTPase TolA_bind_tri PF16331.5 gi|330835101|ref|YP_004409829.1| - 0.0023 18.0 6.3 0.0023 18.0 6.3 8.8 6 3 3 9 9 9 1 TolA binding protein trimerisation ABC_tran PF00005.27 gi|330835101|ref|YP_004409829.1| - 0.0043 17.6 32.3 0.49 10.9 10.8 5.4 2 2 0 2 2 2 1 ABC transporter Baculo_PEP_C PF04513.12 gi|330835101|ref|YP_004409829.1| - 0.037 14.0 34.0 4.9 7.2 0.0 6.2 2 2 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fez1 PF06818.15 gi|330835101|ref|YP_004409829.1| - 0.065 13.7 88.0 0.72 10.3 5.6 5.6 1 1 4 5 5 4 0 Fez1 MMR_HSR1 PF01926.23 gi|330835101|ref|YP_004409829.1| - 1.2 9.3 3.4 1.7 8.7 0.1 3.1 3 0 0 3 3 3 0 50S ribosome-binding GTPase T3SS_basalb_I PF17001.5 gi|330835101|ref|YP_004409829.1| - 3.6 8.3 15.9 0.18 12.4 1.1 4.3 4 1 0 4 4 3 0 Type III secretion basal body protein I, YscI, HrpB, PscI NPV_P10 PF05531.12 gi|330835101|ref|YP_004409829.1| - 3.7 8.1 41.5 0.3 11.6 1.8 7.7 4 3 1 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF4407 PF14362.6 gi|330835101|ref|YP_004409829.1| - 7.5 5.8 51.8 4.4 6.6 13.7 4.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|330835101|ref|YP_004409829.1| - 9.6 6.2 61.7 0.15 12.1 4.3 6.4 3 2 3 6 6 6 0 Laminin Domain II Metallophos_2 PF12850.7 gi|330835102|ref|YP_004409830.1| - 2.9e-12 47.1 0.0 1.3e-11 44.9 0.0 2.0 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|330835102|ref|YP_004409830.1| - 1.6e-10 41.9 1.3 3.5e-10 40.7 1.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Methyltransf_4 PF02390.17 gi|330835102|ref|YP_004409830.1| - 0.029 13.8 0.0 0.059 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Rad60-SLD PF11976.8 gi|330835102|ref|YP_004409830.1| - 0.033 14.0 0.0 0.097 12.5 0.0 1.7 1 0 0 1 1 1 0 Ubiquitin-2 like Rad60 SUMO-like DUF87 PF01935.17 gi|330835103|ref|YP_004409831.1| - 3.6e-44 151.6 1.0 7.1e-44 150.6 1.0 1.5 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|330835103|ref|YP_004409831.1| - 1.2e-12 47.2 1.5 8.8e-07 27.9 0.0 2.5 3 0 0 3 3 3 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|330835103|ref|YP_004409831.1| - 3e-09 36.9 0.1 3e-09 36.9 0.1 2.6 3 0 0 3 3 3 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|330835103|ref|YP_004409831.1| - 9.6e-08 31.3 0.0 2.1e-05 23.6 0.0 2.2 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|330835103|ref|YP_004409831.1| - 3.4e-07 29.9 2.2 0.0046 16.3 0.1 2.4 2 1 0 2 2 2 2 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|330835103|ref|YP_004409831.1| - 4.9e-07 29.0 0.4 0.00086 18.3 0.2 2.1 2 0 0 2 2 2 2 AAA-like domain TACC_C PF05010.14 gi|330835103|ref|YP_004409831.1| - 0.0012 18.7 1.8 0.0021 17.9 1.8 1.3 1 0 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal RRP36 PF06102.12 gi|330835103|ref|YP_004409831.1| - 0.0081 16.1 0.6 0.013 15.4 0.6 1.3 1 0 0 1 1 1 1 rRNA biogenesis protein RRP36 GldM_N PF12081.8 gi|330835103|ref|YP_004409831.1| - 0.021 14.9 1.5 0.035 14.2 0.7 1.7 2 0 0 2 2 2 0 GldM N-terminal domain COG7 PF10191.9 gi|330835103|ref|YP_004409831.1| - 0.036 12.3 0.2 0.054 11.7 0.2 1.2 1 0 0 1 1 1 0 Golgi complex component 7 (COG7) ResIII PF04851.15 gi|330835103|ref|YP_004409831.1| - 0.074 13.0 0.3 4.3 7.3 0.0 2.4 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit Phasin PF05597.11 gi|330835103|ref|YP_004409831.1| - 0.085 12.9 1.1 0.3 11.1 0.9 1.9 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MtaB PF12176.8 gi|330835103|ref|YP_004409831.1| - 0.094 11.5 2.0 0.46 9.2 1.1 2.0 2 0 0 2 2 2 0 Methanol-cobalamin methyltransferase B subunit DUF3510 PF12022.8 gi|330835103|ref|YP_004409831.1| - 0.1 13.0 0.4 26 5.2 0.1 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF3510) ABC_tran PF00005.27 gi|330835103|ref|YP_004409831.1| - 0.14 12.6 0.2 0.32 11.5 0.2 1.5 1 1 0 1 1 1 0 ABC transporter PP2C_C PF07830.13 gi|330835103|ref|YP_004409831.1| - 0.18 12.3 1.6 12 6.5 0.0 3.3 2 1 1 3 3 3 0 Protein serine/threonine phosphatase 2C, C-terminal domain YtxH PF12732.7 gi|330835103|ref|YP_004409831.1| - 0.9 10.1 4.2 0.91 10.1 2.2 2.2 2 0 0 2 2 1 0 YtxH-like protein DUF3240 PF11582.8 gi|330835104|ref|YP_004409832.1| - 0.0092 16.1 0.7 0.24 11.6 0.1 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF3240) Fz PF01392.22 gi|330835104|ref|YP_004409832.1| - 0.012 16.2 1.5 3.9 8.1 0.1 2.2 1 1 1 2 2 2 0 Fz domain DUF4949 PF16307.5 gi|330835104|ref|YP_004409832.1| - 0.047 13.8 3.4 3 8.0 0.3 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4949) DUF905 PF06006.12 gi|330835104|ref|YP_004409832.1| - 0.065 13.2 0.1 18 5.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF905) DUF600 PF04634.12 gi|330835104|ref|YP_004409832.1| - 0.09 12.8 0.8 3.5 7.7 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function, DUF600 DUF2218 PF09981.9 gi|330835104|ref|YP_004409832.1| - 0.13 12.6 1.6 0.34 11.3 1.6 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2218) DUF2024 PF09630.10 gi|330835104|ref|YP_004409832.1| - 0.22 11.4 5.6 5 7.1 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) TPR_19 PF14559.6 gi|330835104|ref|YP_004409832.1| - 0.29 11.7 5.5 0.85 10.2 0.9 3.2 2 2 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330835104|ref|YP_004409832.1| - 1.1 9.6 0.1 1.1 9.6 0.1 3.2 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF1700 PF08006.11 gi|330835104|ref|YP_004409832.1| - 2.9 7.4 5.0 12 5.3 0.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1700) Carb_kinase PF01256.17 gi|330835105|ref|YP_004409833.1| - 2e-51 174.8 0.1 2.8e-51 174.3 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|330835105|ref|YP_004409833.1| - 8.6e-41 139.7 0.1 4.3e-40 137.4 0.0 2.0 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|330835105|ref|YP_004409833.1| - 3.6e-08 33.1 0.1 2.7e-07 30.2 0.0 2.1 1 1 1 2 2 2 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|330835105|ref|YP_004409833.1| - 0.00049 19.5 0.0 0.00091 18.7 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AhpC-TSA PF00578.21 gi|330835106|ref|YP_004409834.1| - 4.2e-38 130.1 0.1 4.8e-38 129.9 0.1 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330835106|ref|YP_004409834.1| - 3.3e-24 85.3 0.0 3.9e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|330835106|ref|YP_004409834.1| - 0.0037 17.4 0.0 0.005 16.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Peptidase_M60 PF13402.6 gi|330835106|ref|YP_004409834.1| - 0.0041 16.7 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase M60, enhancin and enhancin-like Thioredoxin_8 PF13905.6 gi|330835106|ref|YP_004409834.1| - 0.034 14.5 0.0 0.046 14.0 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like GSHPx PF00255.19 gi|330835106|ref|YP_004409834.1| - 0.09 12.4 0.0 0.16 11.6 0.0 1.4 1 1 0 1 1 1 0 Glutathione peroxidase PEPcase_2 PF14010.6 gi|330835107|ref|YP_004409835.1| - 1.7e-205 683.3 1.7 1.9e-205 683.1 1.7 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Amidase PF01425.21 gi|330835108|ref|YP_004409836.1| - 4.5e-86 289.6 2.4 3.6e-66 224.0 3.0 2.1 2 0 0 2 2 2 2 Amidase DUF998 PF06197.13 gi|330835110|ref|YP_004409838.1| - 5.1e-19 68.6 14.8 5.9e-19 68.4 14.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) MS_channel PF00924.18 gi|330835112|ref|YP_004409840.1| - 5e-18 65.4 2.6 5e-18 65.4 2.6 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel FtsK_4TM PF13491.6 gi|330835112|ref|YP_004409840.1| - 0.36 10.5 11.4 0.12 12.1 8.4 1.6 2 0 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE Gly-zipper_YMGG PF13441.6 gi|330835112|ref|YP_004409840.1| - 5.2 6.9 17.0 9.1 6.1 17.0 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper TauE PF01925.19 gi|330835113|ref|YP_004409841.1| - 1e-33 117.0 39.1 1.2e-33 116.7 39.1 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Dak2 PF02734.17 gi|330835113|ref|YP_004409841.1| - 1.7 8.5 5.1 0.84 9.5 0.4 2.4 2 1 1 3 3 3 0 DAK2 domain Ndc1_Nup PF09531.10 gi|330835113|ref|YP_004409841.1| - 4.1 6.0 6.8 5 5.7 6.8 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup Gly-zipper_YMGG PF13441.6 gi|330835113|ref|YP_004409841.1| - 6.3 6.6 14.2 0.52 10.1 0.7 2.9 3 0 0 3 3 3 0 YMGG-like Gly-zipper eRF1_2 PF03464.15 gi|330835114|ref|YP_004409842.1| - 4.2e-41 140.4 0.0 1e-40 139.2 0.0 1.6 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|330835114|ref|YP_004409842.1| - 2.1e-19 70.0 1.8 1.2e-18 67.6 0.8 2.6 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|330835114|ref|YP_004409842.1| - 6.1e-11 42.7 0.0 1.5e-10 41.5 0.0 1.7 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|330835114|ref|YP_004409842.1| - 8.9e-10 39.0 0.0 1.5e-09 38.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|330835114|ref|YP_004409842.1| - 1.4e-05 25.1 0.0 2.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 1 Nucleoporin_C PF03177.14 gi|330835114|ref|YP_004409842.1| - 0.15 10.8 0.0 0.23 10.2 0.0 1.3 1 0 0 1 1 1 0 Non-repetitive/WGA-negative nucleoporin C-terminal Pribosyltran PF00156.27 gi|330835115|ref|YP_004409843.1| - 8.6e-15 54.6 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330835115|ref|YP_004409843.1| - 0.067 12.6 0.0 0.088 12.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Rhodanese PF00581.20 gi|330835116|ref|YP_004409844.1| - 2.2e-11 44.2 0.0 3.2e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain Ald_Xan_dh_C2 PF02738.18 gi|330835118|ref|YP_004409846.1| - 1.4e-148 495.7 0.0 2e-148 495.3 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330835118|ref|YP_004409846.1| - 9.1e-24 83.9 0.0 3.8e-23 81.9 0.0 2.0 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DUF2203 PF09969.9 gi|330835119|ref|YP_004409847.1| - 2.1e-28 99.5 0.1 1.6e-27 96.6 0.1 1.9 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) AAA_21 PF13304.6 gi|330835121|ref|YP_004409849.1| - 0.026 14.3 1.0 0.051 13.4 1.0 1.5 1 0 0 1 1 1 0 AAA domain, putative AbiEii toxin, Type IV TA system Thioredox_DsbH PF03190.15 gi|330835123|ref|YP_004409851.1| - 5e-63 211.9 0.1 8.6e-63 211.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|330835123|ref|YP_004409851.1| - 1.2e-15 57.4 0.1 2.3e-15 56.5 0.1 1.5 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|330835123|ref|YP_004409851.1| - 8e-05 23.0 0.0 0.00017 22.0 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin PF00085.20 gi|330835123|ref|YP_004409851.1| - 0.00065 19.7 0.1 0.0013 18.7 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin SAP30_Sin3_bdg PF13867.6 gi|330835123|ref|YP_004409851.1| - 0.17 12.3 0.2 0.69 10.3 0.1 2.1 2 0 0 2 2 2 0 Sin3 binding region of histone deacetylase complex subunit SAP30 Glyco_hydro_127 PF07944.12 gi|330835123|ref|YP_004409851.1| - 0.2 10.1 0.0 0.29 9.6 0.0 1.1 1 0 0 1 1 1 0 Beta-L-arabinofuranosidase, GH127 adh_short_C2 PF13561.6 gi|330835124|ref|YP_004409852.1| - 3e-33 115.4 0.0 3.6e-33 115.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|330835124|ref|YP_004409852.1| - 5.8e-26 91.2 0.0 6.9e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|330835124|ref|YP_004409852.1| - 1.7e-05 24.8 0.1 3.3e-05 23.9 0.0 1.5 2 0 0 2 2 2 1 KR domain DUF460 PF04312.13 gi|330835124|ref|YP_004409852.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF460) THF_DHG_CYH_C PF02882.19 gi|330835124|ref|YP_004409852.1| - 0.019 14.3 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Glyco_transf_21 PF13506.6 gi|330835126|ref|YP_004409854.1| - 1.8e-16 60.1 0.0 2.6e-16 59.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|330835126|ref|YP_004409854.1| - 4.5e-14 52.6 0.0 6.6e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|330835126|ref|YP_004409854.1| - 1.3e-09 38.3 0.0 3e-09 37.1 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 MttA_Hcf106 PF02416.16 gi|330835128|ref|YP_004409856.1| - 8.9e-10 37.7 4.7 3.7e-09 35.8 4.7 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|330835128|ref|YP_004409856.1| - 0.00098 20.0 2.8 0.0012 19.8 2.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) DUF5320 PF17253.2 gi|330835128|ref|YP_004409856.1| - 0.0025 18.8 1.3 0.0031 18.5 1.3 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5320) DUF3573 PF12097.8 gi|330835128|ref|YP_004409856.1| - 0.019 13.8 2.1 0.018 13.9 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF1192 PF06698.11 gi|330835128|ref|YP_004409856.1| - 0.05 13.7 0.8 0.065 13.3 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1192) DUF2968 PF11180.8 gi|330835128|ref|YP_004409856.1| - 0.17 11.5 10.9 0.19 11.3 10.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Ribosomal_L29 PF00831.23 gi|330835128|ref|YP_004409856.1| - 0.34 10.9 7.7 0.31 11.0 6.4 1.7 1 1 0 1 1 1 0 Ribosomal L29 protein DUF2149 PF09919.9 gi|330835128|ref|YP_004409856.1| - 0.46 10.8 5.2 0.84 9.9 5.2 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2149) FlxA PF14282.6 gi|330835128|ref|YP_004409856.1| - 0.82 9.7 22.8 9.1 6.3 22.7 2.0 1 1 0 1 1 1 0 FlxA-like protein DUF4407 PF14362.6 gi|330835128|ref|YP_004409856.1| - 1 8.7 8.6 1.3 8.3 8.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Prefoldin_2 PF01920.20 gi|330835129|ref|YP_004409857.1| - 0.00013 21.9 1.1 0.055 13.4 0.1 2.1 2 0 0 2 2 2 2 Prefoldin subunit MttA_Hcf106 PF02416.16 gi|330835129|ref|YP_004409857.1| - 0.00022 20.5 0.5 0.00028 20.2 0.5 1.5 1 1 0 1 1 1 1 mttA/Hcf106 family ZapB PF06005.12 gi|330835129|ref|YP_004409857.1| - 0.00074 19.9 1.7 0.087 13.3 0.1 2.1 2 0 0 2 2 2 1 Cell division protein ZapB FlxA PF14282.6 gi|330835129|ref|YP_004409857.1| - 0.0018 18.2 0.9 0.011 15.7 0.1 2.0 2 0 0 2 2 2 1 FlxA-like protein DivIC PF04977.15 gi|330835129|ref|YP_004409857.1| - 0.0033 17.2 1.3 0.094 12.5 0.5 2.2 2 0 0 2 2 2 1 Septum formation initiator DUF3375 PF11855.8 gi|330835129|ref|YP_004409857.1| - 0.0033 16.4 1.8 0.038 12.9 0.4 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3375) TMF_DNA_bd PF12329.8 gi|330835129|ref|YP_004409857.1| - 0.0045 16.9 5.3 0.58 10.2 0.2 2.1 2 0 0 2 2 2 2 TATA element modulatory factor 1 DNA binding Snapin_Pallidin PF14712.6 gi|330835129|ref|YP_004409857.1| - 0.0059 17.0 1.2 0.38 11.2 0.0 2.1 2 0 0 2 2 2 1 Snapin/Pallidin GrpE PF01025.19 gi|330835129|ref|YP_004409857.1| - 0.0069 16.1 0.6 2.1 8.0 0.1 2.1 2 0 0 2 2 2 2 GrpE DUF1192 PF06698.11 gi|330835129|ref|YP_004409857.1| - 0.008 16.2 2.1 0.031 14.3 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1192) DUF4140 PF13600.6 gi|330835129|ref|YP_004409857.1| - 0.0087 16.5 1.3 0.054 13.9 0.3 2.0 2 0 0 2 2 2 1 N-terminal domain of unknown function (DUF4140) LPP PF04728.13 gi|330835129|ref|YP_004409857.1| - 0.0098 16.3 0.1 2.1 8.8 0.1 2.2 2 0 0 2 2 2 1 Lipoprotein leucine-zipper Snf7 PF03357.21 gi|330835129|ref|YP_004409857.1| - 0.0099 15.5 1.0 3 7.4 0.8 2.0 2 0 0 2 2 2 2 Snf7 Seryl_tRNA_N PF02403.22 gi|330835129|ref|YP_004409857.1| - 0.012 15.8 4.5 0.41 10.9 0.1 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2802 PF10975.8 gi|330835129|ref|YP_004409857.1| - 0.018 15.2 1.3 1 9.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Paralemmin PF03285.15 gi|330835129|ref|YP_004409857.1| - 0.02 14.5 0.2 0.02 14.5 0.2 1.6 2 0 0 2 2 2 0 Paralemmin Fib_alpha PF08702.10 gi|330835129|ref|YP_004409857.1| - 0.035 14.3 0.0 0.05 13.8 0.0 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family YabA PF06156.13 gi|330835129|ref|YP_004409857.1| - 0.049 14.3 0.1 9.5 6.9 0.0 2.1 2 0 0 2 2 2 0 Initiation control protein YabA DUF4618 PF15397.6 gi|330835129|ref|YP_004409857.1| - 0.066 12.6 2.6 0.23 10.8 2.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4618) FlaC_arch PF05377.11 gi|330835129|ref|YP_004409857.1| - 0.067 13.6 2.0 4.1 7.9 0.1 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Csm1_N PF18504.1 gi|330835129|ref|YP_004409857.1| - 0.071 13.4 1.8 0.17 12.3 0.3 2.0 2 0 0 2 2 2 0 Csm1 N-terminal domain CorA PF01544.18 gi|330835129|ref|YP_004409857.1| - 0.076 12.3 0.1 0.085 12.2 0.1 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein GIT_CC PF16559.5 gi|330835129|ref|YP_004409857.1| - 0.078 12.9 0.8 0.92 9.4 0.1 2.1 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF948 PF06103.11 gi|330835129|ref|YP_004409857.1| - 0.086 13.1 0.1 4.9 7.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TSC22 PF01166.18 gi|330835129|ref|YP_004409857.1| - 0.097 13.0 1.1 1.8 9.0 0.1 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family DASH_Dam1 PF08653.10 gi|330835129|ref|YP_004409857.1| - 0.13 12.1 0.1 0.62 9.9 0.0 1.9 2 0 0 2 2 2 0 DASH complex subunit Dam1 BLOC1_2 PF10046.9 gi|330835129|ref|YP_004409857.1| - 0.17 12.2 2.5 5.8 7.3 0.3 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFP_35_N PF07334.13 gi|330835129|ref|YP_004409857.1| - 0.23 11.5 2.8 2.5 8.3 0.4 2.2 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus bZIP_2 PF07716.15 gi|330835129|ref|YP_004409857.1| - 0.28 11.3 3.8 0.45 10.6 0.4 2.1 2 0 0 2 2 2 0 Basic region leucine zipper LapA_dom PF06305.11 gi|330835129|ref|YP_004409857.1| - 4.3 7.2 5.5 3.1 7.7 0.6 2.2 2 1 0 2 2 2 0 Lipopolysaccharide assembly protein A domain TatC PF00902.18 gi|330835130|ref|YP_004409858.1| - 2.3e-46 158.3 21.8 2.3e-46 158.3 21.8 1.7 1 1 1 2 2 2 1 Sec-independent protein translocase protein (TatC) RecA PF00154.21 gi|330835131|ref|YP_004409859.1| - 0.11 12.0 0.0 0.11 12.0 0.0 1.0 1 0 0 1 1 1 0 recA bacterial DNA recombination protein HEPN_MAE_28990 PF18737.1 gi|330835132|ref|YP_004409860.1| - 0.0041 17.1 0.5 0.0054 16.7 0.5 1.2 1 0 0 1 1 1 1 MAE_28990/MAE_18760-like HEPN Myosin_N PF02736.19 gi|330835132|ref|YP_004409860.1| - 0.082 12.7 0.4 0.16 11.9 0.4 1.4 1 0 0 1 1 1 0 Myosin N-terminal SH3-like domain HTH_24 PF13412.6 gi|330835133|ref|YP_004409861.1| - 1.7e-28 97.9 1.8 3.8e-17 61.6 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330835133|ref|YP_004409861.1| - 2.3e-20 72.1 0.0 2.2e-12 46.6 0.0 2.2 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|330835133|ref|YP_004409861.1| - 2.9e-11 43.1 0.0 1.7e-05 24.6 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|330835133|ref|YP_004409861.1| - 1.4e-10 40.8 0.1 0.00012 21.8 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|330835133|ref|YP_004409861.1| - 1.7e-10 40.6 1.1 0.00023 21.0 0.2 2.8 3 0 0 3 3 3 2 HTH domain MarR_2 PF12802.7 gi|330835133|ref|YP_004409861.1| - 3.2e-09 36.5 0.0 0.00017 21.4 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_23 PF13384.6 gi|330835133|ref|YP_004409861.1| - 5e-08 32.5 0.0 0.00021 21.0 0.0 2.3 2 0 0 2 2 2 2 Homeodomain-like domain HTH_20 PF12840.7 gi|330835133|ref|YP_004409861.1| - 1.8e-07 31.1 0.0 0.0013 18.7 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330835133|ref|YP_004409861.1| - 6.4e-07 29.3 0.0 0.00013 21.9 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|330835133|ref|YP_004409861.1| - 1.2e-06 28.6 0.0 0.006 16.8 0.0 2.4 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|330835133|ref|YP_004409861.1| - 1.9e-05 24.7 0.0 0.0004 20.4 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|330835133|ref|YP_004409861.1| - 5.2e-05 23.0 0.0 0.09 12.7 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|330835133|ref|YP_004409861.1| - 6.2e-05 23.3 0.1 0.58 10.5 0.0 2.7 3 0 0 3 3 2 2 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|330835133|ref|YP_004409861.1| - 0.00012 21.8 0.1 0.043 13.6 0.0 2.4 2 0 0 2 2 2 1 LexA DNA binding domain HxlR PF01638.17 gi|330835133|ref|YP_004409861.1| - 0.00016 21.5 0.1 0.25 11.2 0.0 2.6 3 0 0 3 3 2 2 HxlR-like helix-turn-helix HTH_10 PF04967.12 gi|330835133|ref|YP_004409861.1| - 0.00024 20.9 0.2 0.28 11.0 0.0 2.4 2 0 0 2 2 2 2 HTH DNA binding domain HTH_34 PF13601.6 gi|330835133|ref|YP_004409861.1| - 0.0013 18.9 0.2 1.5 9.1 0.0 2.6 3 0 0 3 3 2 1 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.12 gi|330835133|ref|YP_004409861.1| - 0.0029 17.3 0.2 1.2 8.9 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 RepL PF05732.11 gi|330835133|ref|YP_004409861.1| - 0.0033 16.9 0.0 0.96 8.9 0.0 2.2 2 0 0 2 2 2 1 Firmicute plasmid replication protein (RepL) HTH_DeoR PF08220.12 gi|330835133|ref|YP_004409861.1| - 0.0036 17.0 0.0 0.44 10.3 0.0 2.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|330835133|ref|YP_004409861.1| - 0.0043 17.1 0.5 0.7 10.0 0.0 2.3 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_9 PF08221.11 gi|330835133|ref|YP_004409861.1| - 0.0051 16.9 0.1 1.4 9.1 0.1 2.6 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_30 PF13556.6 gi|330835133|ref|YP_004409861.1| - 0.0051 16.6 0.0 0.012 15.4 0.0 1.5 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_micro PF17007.5 gi|330835133|ref|YP_004409861.1| - 0.009 14.9 0.2 0.23 10.2 0.0 2.1 2 0 0 2 2 2 1 HTH-like HTH_8 PF02954.19 gi|330835133|ref|YP_004409861.1| - 0.0098 15.7 0.1 0.05 13.4 0.0 2.3 2 0 0 2 2 1 1 Bacterial regulatory protein, Fis family HTH_27 PF13463.6 gi|330835133|ref|YP_004409861.1| - 0.022 15.2 0.0 13 6.4 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain GntR PF00392.21 gi|330835133|ref|YP_004409861.1| - 0.037 13.7 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_1 PF00126.27 gi|330835133|ref|YP_004409861.1| - 0.044 13.7 0.0 0.58 10.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_12 PF08461.10 gi|330835133|ref|YP_004409861.1| - 0.049 13.6 0.2 0.31 11.0 0.0 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|330835133|ref|YP_004409861.1| - 0.069 12.7 0.5 2.5 7.7 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_39 PF14090.6 gi|330835133|ref|YP_004409861.1| - 0.08 12.7 0.0 0.68 9.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TetR_N PF00440.23 gi|330835133|ref|YP_004409861.1| - 0.09 12.6 0.0 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family FeoC PF09012.10 gi|330835133|ref|YP_004409861.1| - 0.097 12.8 0.0 0.86 9.7 0.0 2.2 2 0 0 2 2 2 0 FeoC like transcriptional regulator HTH_3 PF01381.22 gi|330835133|ref|YP_004409861.1| - 0.1 12.7 0.5 2.4 8.3 0.0 3.1 4 0 0 4 4 3 0 Helix-turn-helix HSM3_C PF18794.1 gi|330835133|ref|YP_004409861.1| - 0.12 12.0 0.1 0.2 11.2 0.1 1.3 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, C terminal domain B-block_TFIIIC PF04182.12 gi|330835133|ref|YP_004409861.1| - 0.12 12.6 0.0 21 5.3 0.0 2.6 2 1 0 2 2 2 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.17 gi|330835133|ref|YP_004409861.1| - 0.16 11.8 1.6 13 5.7 0.0 2.6 3 0 0 3 3 2 0 TFIIE alpha subunit HTH_IclR PF09339.10 gi|330835133|ref|YP_004409861.1| - 0.17 11.7 0.0 24 4.8 0.0 2.3 2 0 0 2 2 2 0 IclR helix-turn-helix domain COQ7 PF03232.13 gi|330835135|ref|YP_004409863.1| - 0.00017 21.4 0.1 0.00044 20.1 0.1 1.7 1 1 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 Cytochrom_B_N_2 PF13631.6 gi|330835135|ref|YP_004409863.1| - 0.07 13.1 0.0 0.09 12.8 0.0 1.1 1 0 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB SWIM PF04434.17 gi|330835136|ref|YP_004409864.1| - 0.00041 19.9 0.7 0.002 17.7 0.3 1.9 2 0 0 2 2 2 1 SWIM zinc finger DUF929 PF06053.11 gi|330835137|ref|YP_004409865.1| - 7.3e-44 149.9 11.1 1.4e-43 149.0 11.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF929) AhpC-TSA PF00578.21 gi|330835137|ref|YP_004409865.1| - 0.0008 19.3 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_7 PF13899.6 gi|330835137|ref|YP_004409865.1| - 0.0027 17.9 0.0 0.0065 16.6 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.10 gi|330835137|ref|YP_004409865.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Redoxin Thioredoxin_2 PF13098.6 gi|330835137|ref|YP_004409865.1| - 0.13 12.7 0.1 0.37 11.2 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin-like domain Sigma_reg_N PF13800.6 gi|330835137|ref|YP_004409865.1| - 0.23 11.8 1.6 0.47 10.8 1.6 1.6 1 0 0 1 1 1 0 Sigma factor regulator N-terminal DUF3139 PF11337.8 gi|330835137|ref|YP_004409865.1| - 3 8.6 8.0 0.85 10.3 4.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) Ub-Mut7C PF14451.6 gi|330835138|ref|YP_004409866.1| - 0.13 12.1 0.0 27 4.7 0.0 2.5 2 0 0 2 2 2 0 Mut7-C ubiquitin DUF4305 PF14146.6 gi|330835138|ref|YP_004409866.1| - 0.15 12.3 0.9 0.46 10.7 0.9 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4305) TsaE PF02367.17 gi|330835138|ref|YP_004409866.1| - 0.18 11.8 0.0 30 4.6 0.0 2.3 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE LVIVD PF08309.11 gi|330835138|ref|YP_004409866.1| - 0.19 11.0 1.8 20 4.6 0.1 2.8 2 0 0 2 2 2 0 LVIVD repeat PsbI PF02532.14 gi|330835138|ref|YP_004409866.1| - 2.8 7.9 8.3 19 5.3 1.1 2.8 2 0 0 2 2 2 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) XYPPX PF02162.17 gi|330835138|ref|YP_004409866.1| - 7.9 6.4 7.9 32 4.5 1.0 3.1 2 0 0 2 2 2 0 XYPPX repeat (two copies) Fer4_10 PF13237.6 gi|330835139|ref|YP_004409867.1| - 5.8e-07 29.5 6.2 1e-06 28.7 6.2 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835139|ref|YP_004409867.1| - 0.00049 20.2 4.3 0.0012 18.9 4.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835139|ref|YP_004409867.1| - 0.00063 19.7 7.9 0.12 12.5 2.1 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330835139|ref|YP_004409867.1| - 0.0012 19.4 7.8 0.0012 19.4 7.8 2.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330835139|ref|YP_004409867.1| - 0.044 13.9 4.6 0.11 12.7 4.6 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835139|ref|YP_004409867.1| - 0.078 13.9 3.5 8 7.5 1.0 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|330835139|ref|YP_004409867.1| - 0.18 11.7 10.4 0.69 9.8 0.6 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330835139|ref|YP_004409867.1| - 0.21 12.2 7.0 15 6.2 7.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330835139|ref|YP_004409867.1| - 0.21 11.4 5.2 0.75 9.6 5.3 1.8 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_8 PF13183.6 gi|330835139|ref|YP_004409867.1| - 2.3 8.7 9.8 5.4 7.5 0.2 2.5 2 1 0 3 3 3 0 4Fe-4S dicluster domain VKOR PF07884.14 gi|330835140|ref|YP_004409868.1| - 1.7e-22 79.9 12.6 2e-22 79.7 12.6 1.0 1 0 0 1 1 1 1 Vitamin K epoxide reductase family PQQ_2 PF13360.6 gi|330835141|ref|YP_004409869.1| - 1.7e-22 80.1 0.0 1e-10 41.6 0.0 3.3 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|330835141|ref|YP_004409869.1| - 2.6e-19 68.2 4.9 0.00042 20.1 0.0 7.0 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_3 PF13570.6 gi|330835141|ref|YP_004409869.1| - 1e-05 25.8 26.8 0.0089 16.5 0.1 8.0 8 1 0 8 8 8 3 PQQ-like domain ABC_tran PF00005.27 gi|330835142|ref|YP_004409870.1| - 2.1e-13 51.0 0.1 6.7e-12 46.1 0.1 2.3 1 1 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835142|ref|YP_004409870.1| - 7.3e-11 42.4 0.2 6.2e-05 23.0 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330835142|ref|YP_004409870.1| - 1.5e-10 40.9 0.1 2.7e-05 23.7 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330835142|ref|YP_004409870.1| - 2.8e-08 34.5 0.3 3.5e-08 34.2 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330835142|ref|YP_004409870.1| - 4.7e-05 23.8 0.1 0.0001 22.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|330835142|ref|YP_004409870.1| - 0.00011 22.0 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|330835142|ref|YP_004409870.1| - 0.0002 20.2 0.2 0.011 14.4 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|330835142|ref|YP_004409870.1| - 0.0003 20.5 0.0 0.00066 19.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|330835142|ref|YP_004409870.1| - 0.00087 19.6 0.1 0.0025 18.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|330835142|ref|YP_004409870.1| - 0.0013 18.9 0.0 0.042 14.1 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit NACHT PF05729.12 gi|330835142|ref|YP_004409870.1| - 0.0017 18.3 0.4 0.007 16.3 0.1 2.0 2 0 0 2 2 2 1 NACHT domain AAA_27 PF13514.6 gi|330835142|ref|YP_004409870.1| - 0.002 17.7 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|330835142|ref|YP_004409870.1| - 0.0029 16.5 0.2 0.0087 14.9 0.1 1.7 2 0 0 2 2 2 1 Predicted ATPase of the ABC class Lactamase_B_5 PF14597.6 gi|330835142|ref|YP_004409870.1| - 0.0079 15.7 0.1 0.013 15.0 0.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NTPase_1 PF03266.15 gi|330835142|ref|YP_004409870.1| - 0.0079 16.1 0.2 0.018 14.9 0.2 1.7 1 1 0 1 1 1 1 NTPase AAA_15 PF13175.6 gi|330835142|ref|YP_004409870.1| - 0.017 14.9 0.2 0.029 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|330835142|ref|YP_004409870.1| - 0.024 13.9 0.0 0.05 12.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF3584 PF12128.8 gi|330835142|ref|YP_004409870.1| - 0.029 11.9 0.1 0.043 11.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) MobB PF03205.14 gi|330835142|ref|YP_004409870.1| - 0.03 14.2 0.1 0.071 13.0 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.6 gi|330835142|ref|YP_004409870.1| - 0.033 14.5 0.1 0.063 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain Roc PF08477.13 gi|330835142|ref|YP_004409870.1| - 0.04 14.2 0.0 0.62 10.3 0.0 2.2 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|330835142|ref|YP_004409870.1| - 0.045 13.4 0.4 0.12 11.9 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain KDGP_aldolase PF07071.11 gi|330835142|ref|YP_004409870.1| - 0.079 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 KDGP aldolase MMR_HSR1 PF01926.23 gi|330835142|ref|YP_004409870.1| - 0.084 13.0 0.3 0.51 10.4 0.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase TsaE PF02367.17 gi|330835142|ref|YP_004409870.1| - 0.085 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|330835142|ref|YP_004409870.1| - 0.096 13.1 0.0 0.15 12.5 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|330835142|ref|YP_004409870.1| - 0.11 12.5 1.0 0.37 10.9 0.2 2.0 2 1 0 2 2 2 0 Helicase HerA, central domain AAA_14 PF13173.6 gi|330835142|ref|YP_004409870.1| - 0.22 11.5 1.0 0.58 10.2 0.2 2.3 2 1 0 2 2 2 0 AAA domain FecCD PF01032.18 gi|330835143|ref|YP_004409871.1| - 2.5e-64 217.3 30.8 2.9e-64 217.0 30.8 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|330835143|ref|YP_004409871.1| - 0.00067 19.2 22.7 0.00098 18.7 22.7 1.3 1 0 0 1 1 1 1 ABC 3 transport family Yip1 PF04893.17 gi|330835143|ref|YP_004409871.1| - 0.0031 17.3 11.8 0.0031 17.3 11.8 3.4 1 1 0 2 2 2 1 Yip1 domain Phage_holin_3_1 PF05106.12 gi|330835143|ref|YP_004409871.1| - 0.8 10.2 5.7 11 6.5 0.2 2.6 2 0 0 2 2 2 0 Phage holin family (Lysis protein S) DUF3180 PF11377.8 gi|330835143|ref|YP_004409871.1| - 1.7 8.8 14.6 0.29 11.3 1.2 4.2 2 1 1 4 4 4 0 Protein of unknown function (DUF3180) Peripla_BP_2 PF01497.18 gi|330835144|ref|YP_004409872.1| - 3.2e-15 56.4 0.0 3.9e-15 56.1 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Med21 PF11221.8 gi|330835144|ref|YP_004409872.1| - 0.024 14.9 0.0 0.049 13.9 0.0 1.4 1 0 0 1 1 1 0 Subunit 21 of Mediator complex TrkA_N PF02254.18 gi|330835145|ref|YP_004409873.1| - 3.5e-17 62.7 0.3 6.2e-17 61.9 0.3 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|330835145|ref|YP_004409873.1| - 0.0001 22.1 0.1 0.0004 20.1 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain Ion_trans_2 PF07885.16 gi|330835145|ref|YP_004409873.1| - 0.066 13.2 5.5 0.13 12.2 5.5 1.5 1 0 0 1 1 1 0 Ion channel TrmB PF01978.19 gi|330835146|ref|YP_004409874.1| - 2.1e-05 24.3 0.0 3.1e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330835146|ref|YP_004409874.1| - 0.00026 20.5 0.0 0.00057 19.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|330835146|ref|YP_004409874.1| - 0.0046 16.7 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330835146|ref|YP_004409874.1| - 0.0075 16.2 0.1 0.018 15.0 0.0 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HemN_C PF06969.16 gi|330835146|ref|YP_004409874.1| - 0.062 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain HTH_45 PF14947.6 gi|330835146|ref|YP_004409874.1| - 0.097 12.7 0.0 0.18 11.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix RP-C PF03428.13 gi|330835146|ref|YP_004409874.1| - 0.13 11.9 0.0 0.34 10.5 0.0 1.7 2 1 0 2 2 2 0 Replication protein C N-terminal domain HTH_11 PF08279.12 gi|330835146|ref|YP_004409874.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|330835146|ref|YP_004409874.1| - 0.15 12.4 0.0 0.29 11.5 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator NrfD PF03916.14 gi|330835148|ref|YP_004409876.1| - 8.7e-11 42.0 31.7 4.9e-09 36.2 28.2 2.3 2 1 0 2 2 2 2 Polysulphide reductase, NrfD TPR_19 PF14559.6 gi|330835149|ref|YP_004409877.1| - 1.4e-18 67.1 3.8 5.6e-05 23.6 0.2 4.7 2 1 3 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330835149|ref|YP_004409877.1| - 3.1e-16 59.7 1.0 9.4e-05 23.0 0.0 3.8 3 1 0 4 4 3 3 Tetratricopeptide repeat TPR_2 PF07719.17 gi|330835149|ref|YP_004409877.1| - 1.1e-14 53.3 17.2 0.029 14.5 0.1 7.7 8 0 0 8 8 8 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|330835149|ref|YP_004409877.1| - 1.1e-14 53.6 3.7 0.062 13.7 0.0 7.2 7 2 0 7 7 7 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|330835149|ref|YP_004409877.1| - 8.5e-14 51.0 10.7 0.00067 19.3 0.0 5.7 6 1 1 7 7 7 4 TPR repeat ANAPC3 PF12895.7 gi|330835149|ref|YP_004409877.1| - 4.1e-12 46.2 7.0 0.00018 21.7 0.1 3.8 2 1 2 4 4 4 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_14 PF13428.6 gi|330835149|ref|YP_004409877.1| - 7.3e-11 41.9 1.8 0.033 15.0 0.1 6.1 2 1 5 7 7 7 2 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330835149|ref|YP_004409877.1| - 8.4e-10 38.1 17.0 0.027 14.3 0.0 7.9 8 0 0 8 8 8 3 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330835149|ref|YP_004409877.1| - 1.1e-09 37.7 20.4 0.01 16.0 0.1 8.2 8 1 0 8 8 8 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|330835149|ref|YP_004409877.1| - 1.3e-07 31.7 12.3 0.0054 17.0 0.2 5.4 4 2 1 5 5 5 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|330835149|ref|YP_004409877.1| - 1.8e-07 31.2 0.1 0.0012 19.0 0.0 3.8 1 1 5 6 6 6 3 Tetratricopeptide repeat NARP1 PF12569.8 gi|330835149|ref|YP_004409877.1| - 4.6e-07 29.1 5.8 0.0013 17.8 0.0 3.9 1 1 2 4 4 4 1 NMDA receptor-regulated protein 1 SRP_TPR_like PF17004.5 gi|330835149|ref|YP_004409877.1| - 5.4e-05 23.2 8.2 0.0087 16.1 2.5 3.6 1 1 2 3 3 3 2 Putative TPR-like repeat ChAPs PF09295.10 gi|330835149|ref|YP_004409877.1| - 0.0011 18.1 0.1 0.4 9.6 0.0 2.1 1 1 1 2 2 2 2 ChAPs (Chs5p-Arf1p-binding proteins) TPR_15 PF13429.6 gi|330835149|ref|YP_004409877.1| - 0.0018 17.6 0.7 0.013 14.8 0.8 2.3 1 1 0 1 1 1 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|330835149|ref|YP_004409877.1| - 0.0025 18.1 2.3 0.27 11.6 0.1 4.0 3 2 2 5 5 5 1 Tetratricopeptide repeat TPR_MalT PF17874.1 gi|330835149|ref|YP_004409877.1| - 0.0069 15.8 1.9 0.51 9.7 0.0 3.1 2 1 2 4 4 4 1 MalT-like TPR region TPR_6 PF13174.6 gi|330835149|ref|YP_004409877.1| - 0.016 15.8 11.0 24 5.8 0.1 6.3 7 0 0 7 7 6 0 Tetratricopeptide repeat HrpB1_HrpK PF09613.10 gi|330835149|ref|YP_004409877.1| - 0.023 14.3 0.2 0.19 11.4 0.0 2.3 3 0 0 3 3 2 0 Bacterial type III secretion protein (HrpB1_HrpK) Coatomer_E PF04733.14 gi|330835149|ref|YP_004409877.1| - 0.029 13.8 3.5 8.1 5.8 0.1 3.8 1 1 2 4 4 4 0 Coatomer epsilon subunit TPR_7 PF13176.6 gi|330835149|ref|YP_004409877.1| - 0.053 13.6 2.4 4.5 7.5 0.0 4.7 6 0 0 6 6 5 0 Tetratricopeptide repeat Fis1_TPR_C PF14853.6 gi|330835149|ref|YP_004409877.1| - 0.086 12.9 8.1 14 5.8 0.1 4.4 3 1 2 5 5 4 0 Fis1 C-terminal tetratricopeptide repeat DUF3856 PF12968.7 gi|330835149|ref|YP_004409877.1| - 0.2 11.7 2.1 6 6.9 0.2 3.7 3 2 1 4 4 3 0 Domain of Unknown Function (DUF3856) TPR_10 PF13374.6 gi|330835149|ref|YP_004409877.1| - 0.86 9.6 6.5 24 5.0 0.2 4.4 5 0 0 5 5 5 0 Tetratricopeptide repeat Molybdopterin PF00384.22 gi|330835150|ref|YP_004409878.1| - 1.7e-05 24.0 0.0 0.00061 18.9 0.0 2.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase TAT_signal PF10518.9 gi|330835150|ref|YP_004409878.1| - 0.00035 20.3 0.5 0.00085 19.1 0.5 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.16 gi|330835150|ref|YP_004409878.1| - 0.11 12.5 0.1 0.25 11.4 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Fer4_11 PF13247.6 gi|330835151|ref|YP_004409879.1| - 2.8e-19 69.1 13.2 3.8e-19 68.7 7.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835151|ref|YP_004409879.1| - 4.4e-13 49.6 10.2 4.3e-07 30.4 2.1 3.1 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835151|ref|YP_004409879.1| - 9.6e-09 35.2 16.0 2.8e-06 27.3 5.8 3.3 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835151|ref|YP_004409879.1| - 1e-06 28.8 16.1 0.0028 17.8 7.6 3.3 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835151|ref|YP_004409879.1| - 8e-06 26.2 11.3 1.9e-05 25.0 1.2 3.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835151|ref|YP_004409879.1| - 0.0024 18.2 29.9 0.16 12.5 1.3 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4 PF00037.27 gi|330835151|ref|YP_004409879.1| - 0.0045 16.8 26.1 0.013 15.3 0.8 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330835151|ref|YP_004409879.1| - 0.016 15.3 24.5 0.73 10.1 0.2 4.7 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835151|ref|YP_004409879.1| - 0.019 15.8 7.1 0.019 15.8 7.1 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835151|ref|YP_004409879.1| - 0.13 12.4 22.8 0.8 9.9 1.4 3.6 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330835151|ref|YP_004409879.1| - 0.15 12.6 18.4 0.55 10.8 0.3 3.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330835151|ref|YP_004409879.1| - 3.9 7.3 16.8 0.21 11.3 1.8 3.3 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|330835151|ref|YP_004409879.1| - 4 7.7 27.5 1.1 9.4 3.9 4.8 5 0 0 5 5 5 0 4Fe-4S binding domain Nitrate_red_del PF02613.15 gi|330835152|ref|YP_004409880.1| - 5.7e-20 71.7 0.0 7.9e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit UDPG_MGDP_dh PF00984.19 gi|330835152|ref|YP_004409880.1| - 0.088 13.0 0.0 0.13 12.5 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Fer4_7 PF12838.7 gi|330835153|ref|YP_004409881.1| - 3e-07 30.9 18.8 0.0035 17.9 0.8 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835153|ref|YP_004409881.1| - 1.3e-06 28.4 22.5 0.00044 20.3 0.9 3.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835153|ref|YP_004409881.1| - 1.5e-06 28.3 17.4 0.017 15.3 0.2 3.8 4 0 0 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835153|ref|YP_004409881.1| - 2.8e-05 23.7 31.2 4e-05 23.2 4.1 5.4 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330835153|ref|YP_004409881.1| - 4.3e-05 23.4 11.8 0.00025 21.0 5.2 4.7 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330835153|ref|YP_004409881.1| - 0.0016 18.4 31.1 0.002 18.1 3.7 5.4 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835153|ref|YP_004409881.1| - 0.002 18.2 6.4 0.002 18.2 6.4 3.3 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835153|ref|YP_004409881.1| - 0.031 14.8 2.5 0.031 14.8 2.5 5.2 6 0 0 6 6 6 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|330835153|ref|YP_004409881.1| - 0.097 12.8 2.9 17 5.5 0.0 3.3 3 0 0 3 3 3 0 Divergent 4Fe-4S mono-cluster Fer4_15 PF13459.6 gi|330835153|ref|YP_004409881.1| - 0.12 13.2 15.3 0.12 13.1 1.2 4.5 5 0 0 5 5 5 0 4Fe-4S single cluster domain Fer4_17 PF13534.6 gi|330835153|ref|YP_004409881.1| - 0.13 12.8 19.0 0.45 11.1 0.1 4.3 3 2 1 4 4 4 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835153|ref|YP_004409881.1| - 0.14 12.6 16.2 1 9.9 0.6 3.8 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330835153|ref|YP_004409881.1| - 1.7 9.5 10.7 4.6 8.2 0.1 3.6 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330835153|ref|YP_004409881.1| - 4.4 7.9 15.7 7.5 7.2 2.1 4.5 4 0 0 4 4 4 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|330835153|ref|YP_004409881.1| - 6.7 6.9 8.2 17 5.6 2.1 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain DUF2299 PF10061.9 gi|330835155|ref|YP_004409883.1| - 3.4e-35 120.8 0.0 3.8e-35 120.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) MS_channel PF00924.18 gi|330835156|ref|YP_004409884.1| - 3.6e-29 101.8 0.2 3.6e-29 101.8 0.2 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Osmo_CC PF08946.10 gi|330835157|ref|YP_004409885.1| - 0.11 12.7 0.5 1.2 9.5 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Band_7 PF01145.25 gi|330835158|ref|YP_004409886.1| - 3.7e-26 92.2 0.1 6.1e-26 91.5 0.0 1.4 1 1 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|330835158|ref|YP_004409886.1| - 5.5e-11 42.6 0.2 2.4e-10 40.5 0.2 1.8 1 1 0 1 1 1 1 SPFH domain-Band 7 family CBP_BcsF PF11120.8 gi|330835159|ref|YP_004409887.1| - 0.1 12.7 0.8 0.28 11.3 0.8 1.8 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsF Vps4_C PF09336.10 gi|330835161|ref|YP_004409889.1| - 0.027 14.5 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 Vps4 C terminal oligomerisation domain Thioredoxin_11 PF18078.1 gi|330835161|ref|YP_004409889.1| - 0.049 13.7 0.1 0.082 13.0 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin-like SNTX domain SoxE PF06525.11 gi|330835162|ref|YP_004409890.1| - 9.6e-63 210.1 1.4 1.8e-62 209.3 1.4 1.4 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain DUF3139 PF11337.8 gi|330835162|ref|YP_004409890.1| - 0.032 14.9 0.1 0.05 14.3 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) Aminotran_5 PF00266.19 gi|330835164|ref|YP_004409892.1| - 1.4e-40 139.5 0.0 1.7e-40 139.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|330835164|ref|YP_004409892.1| - 0.00091 17.8 0.0 0.0014 17.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme NAD_binding_7 PF13241.6 gi|330835164|ref|YP_004409892.1| - 0.011 16.2 0.1 0.02 15.3 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Aconitase_C PF00694.19 gi|330835166|ref|YP_004409894.1| - 7.5e-22 78.1 0.0 9.9e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.13 gi|330835166|ref|YP_004409894.1| - 0.0013 18.5 1.4 0.094 12.3 1.4 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus BON PF04972.17 gi|330835166|ref|YP_004409894.1| - 2.2 8.6 6.0 8.4 6.8 0.4 2.3 2 0 0 2 2 2 0 BON domain Aconitase PF00330.20 gi|330835167|ref|YP_004409895.1| - 1.6e-72 245.0 4.2 3.3e-70 237.4 4.2 2.4 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|330835167|ref|YP_004409895.1| - 0.0045 15.7 0.0 0.0084 14.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Phage_holin_2_4 PF16082.5 gi|330835167|ref|YP_004409895.1| - 5 6.9 6.1 4 7.2 3.9 1.9 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like zf-ribbon_3 PF13248.6 gi|330835168|ref|YP_004409896.1| - 2.1e-05 23.8 2.4 0.018 14.4 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-TFIIB PF13453.6 gi|330835168|ref|YP_004409896.1| - 0.0015 17.8 0.8 0.0018 17.6 0.8 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger UBZ_FAAP20 PF15750.5 gi|330835168|ref|YP_004409896.1| - 0.0025 17.7 0.8 0.34 10.9 0.0 2.1 2 0 0 2 2 2 1 Ubiquitin-binding zinc-finger zf_UBZ PF18439.1 gi|330835168|ref|YP_004409896.1| - 0.0047 16.5 1.2 0.22 11.2 0.1 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|330835168|ref|YP_004409896.1| - 0.008 16.1 0.5 0.11 12.5 0.1 2.1 2 0 0 2 2 2 1 YhfH-like protein DUF2256 PF10013.9 gi|330835168|ref|YP_004409896.1| - 0.0098 16.0 2.8 0.39 10.9 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2256) DUF35_N PF12172.8 gi|330835168|ref|YP_004409896.1| - 0.0099 15.7 1.6 0.2 11.6 0.0 2.1 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf_Rg PF17915.1 gi|330835168|ref|YP_004409896.1| - 0.01 15.2 1.6 0.15 11.5 0.1 2.1 1 1 1 2 2 2 0 Reverse gyrase zinc finger PADR1 PF08063.12 gi|330835168|ref|YP_004409896.1| - 0.012 15.4 1.0 0.52 10.1 0.1 2.1 2 0 0 2 2 2 0 PADR1 (NUC008) domain DZR PF12773.7 gi|330835168|ref|YP_004409896.1| - 0.012 15.7 1.3 0.019 15.0 1.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.19 gi|330835168|ref|YP_004409896.1| - 0.016 15.0 1.8 2.1 8.2 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_4 PF13894.6 gi|330835168|ref|YP_004409896.1| - 0.017 15.9 2.2 0.78 10.7 0.3 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger HypA PF01155.19 gi|330835168|ref|YP_004409896.1| - 0.023 14.7 0.4 0.025 14.6 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|330835168|ref|YP_004409896.1| - 0.036 13.6 2.7 0.23 11.0 2.8 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Herpes_glycoH_C PF17488.2 gi|330835168|ref|YP_004409896.1| - 0.036 13.9 0.4 0.063 13.1 0.4 1.5 1 1 0 1 1 1 0 Herpesvirus glycoprotein H C-terminal domain zinc_ribbon_4 PF13717.6 gi|330835168|ref|YP_004409896.1| - 0.037 14.0 4.9 0.15 12.0 4.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|330835168|ref|YP_004409896.1| - 0.053 14.0 3.0 0.33 11.5 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Nudix_N_2 PF14803.6 gi|330835168|ref|YP_004409896.1| - 0.058 13.3 2.4 0.095 12.6 2.3 1.5 1 1 0 1 1 1 0 Nudix N-terminal ADK_lid PF05191.14 gi|330835168|ref|YP_004409896.1| - 0.065 13.2 3.3 3 7.9 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf_C2H2_10 PF18414.1 gi|330835168|ref|YP_004409896.1| - 0.068 12.7 4.3 0.66 9.6 1.0 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger eIF-5_eIF-2B PF01873.17 gi|330835168|ref|YP_004409896.1| - 0.083 12.8 1.5 0.1 12.4 1.5 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-LITAF-like PF10601.9 gi|330835168|ref|YP_004409896.1| - 0.099 12.9 3.3 2.8 8.3 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain GcpE PF04551.14 gi|330835168|ref|YP_004409896.1| - 0.13 11.3 0.4 0.14 11.2 0.4 1.0 1 0 0 1 1 1 0 GcpE protein Prok-RING_1 PF14446.6 gi|330835168|ref|YP_004409896.1| - 0.14 12.1 4.3 0.25 11.3 4.3 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-Mss51 PF13824.6 gi|330835168|ref|YP_004409896.1| - 0.17 12.0 0.9 0.21 11.7 0.9 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-H2C2_2 PF13465.6 gi|330835168|ref|YP_004409896.1| - 0.2 12.2 3.2 0.81 10.2 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-C3HC4_3 PF13920.6 gi|330835168|ref|YP_004409896.1| - 0.22 11.4 5.3 0.74 9.7 0.6 2.1 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.11 gi|330835168|ref|YP_004409896.1| - 0.24 11.3 2.7 0.49 10.3 2.7 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain CpXC PF14353.6 gi|330835168|ref|YP_004409896.1| - 0.26 11.3 2.1 0.35 10.9 0.1 1.8 1 1 1 2 2 2 0 CpXC protein Prok-RING_4 PF14447.6 gi|330835168|ref|YP_004409896.1| - 0.27 11.1 3.8 0.93 9.4 0.2 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 Rad50_zn_hook PF04423.14 gi|330835168|ref|YP_004409896.1| - 0.3 10.9 6.5 2 8.3 0.9 2.1 1 1 0 2 2 2 0 Rad50 zinc hook motif Zn-C2H2_12 PF18112.1 gi|330835168|ref|YP_004409896.1| - 0.32 11.5 7.3 4 8.0 0.9 2.1 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-WRNIP1_ubi PF18279.1 gi|330835168|ref|YP_004409896.1| - 0.33 11.7 2.1 1.3 9.8 0.4 2.0 2 0 0 2 2 2 0 Werner helicase-interacting protein 1 ubiquitin-binding domain Auto_anti-p27 PF06677.12 gi|330835168|ref|YP_004409896.1| - 0.37 11.0 3.5 9 6.6 0.3 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_9 PF14369.6 gi|330835168|ref|YP_004409896.1| - 0.44 10.8 3.2 2 8.8 3.4 1.8 1 1 1 2 2 2 0 zinc-ribbon zf-C2H2_6 PF13912.6 gi|330835168|ref|YP_004409896.1| - 0.49 10.5 4.5 0.8 9.8 0.5 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_5 PF13719.6 gi|330835168|ref|YP_004409896.1| - 0.5 10.2 6.4 0.92 9.3 6.4 1.4 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330835168|ref|YP_004409896.1| - 0.52 10.5 5.3 4.1 7.6 5.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|330835168|ref|YP_004409896.1| - 0.61 10.1 4.7 2.2 8.3 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HTH_24 PF13412.6 gi|330835169|ref|YP_004409897.1| - 2.7e-25 87.7 0.0 1.6e-12 46.8 0.0 2.6 3 0 0 3 3 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330835169|ref|YP_004409897.1| - 3.4e-17 62.0 0.0 1.2e-08 34.6 0.0 2.4 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|330835169|ref|YP_004409897.1| - 3.4e-11 42.9 0.0 0.00034 20.5 0.0 2.2 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|330835169|ref|YP_004409897.1| - 8.8e-11 41.6 0.1 7.5e-06 25.8 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|330835169|ref|YP_004409897.1| - 4.2e-10 39.3 0.0 1.8e-06 27.7 0.0 2.4 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|330835169|ref|YP_004409897.1| - 8.4e-09 35.2 0.2 1.2e-05 25.1 0.1 2.3 2 0 0 2 2 2 2 HTH domain Sigma70_r4_2 PF08281.12 gi|330835169|ref|YP_004409897.1| - 9.3e-07 28.4 0.1 0.0081 15.8 0.0 2.4 2 0 0 2 2 2 2 Sigma-70, region 4 HTH_20 PF12840.7 gi|330835169|ref|YP_004409897.1| - 1e-06 28.7 0.0 0.00029 20.8 0.0 2.6 3 0 0 3 3 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|330835169|ref|YP_004409897.1| - 3.3e-06 26.8 0.0 1.9e-05 24.3 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|330835169|ref|YP_004409897.1| - 3.5e-06 27.1 0.1 0.047 13.9 0.0 2.5 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|330835169|ref|YP_004409897.1| - 5e-06 26.3 1.4 0.0093 15.8 0.2 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|330835169|ref|YP_004409897.1| - 8.1e-06 25.5 0.0 0.0061 16.3 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain GerE PF00196.19 gi|330835169|ref|YP_004409897.1| - 1.7e-05 24.3 0.2 0.24 11.0 0.0 2.6 2 0 0 2 2 2 2 Bacterial regulatory proteins, luxR family TFIIE_alpha PF02002.17 gi|330835169|ref|YP_004409897.1| - 1.8e-05 24.5 0.4 0.0079 16.0 0.1 2.9 3 0 0 3 3 3 1 TFIIE alpha subunit HTH_10 PF04967.12 gi|330835169|ref|YP_004409897.1| - 0.0001 22.0 0.0 0.1 12.4 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|330835169|ref|YP_004409897.1| - 0.00024 21.0 0.0 0.25 11.4 0.0 2.6 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain HTH_Mga PF08280.11 gi|330835169|ref|YP_004409897.1| - 0.0003 20.7 0.0 0.012 15.7 0.0 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain RepL PF05732.11 gi|330835169|ref|YP_004409897.1| - 0.00031 20.2 0.9 0.047 13.1 0.0 2.6 3 1 0 3 3 2 1 Firmicute plasmid replication protein (RepL) HTH_12 PF08461.10 gi|330835169|ref|YP_004409897.1| - 0.00036 20.4 0.5 0.2 11.7 0.1 2.5 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|330835169|ref|YP_004409897.1| - 0.00046 20.5 0.1 0.13 12.6 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator DUF4423 PF14394.6 gi|330835169|ref|YP_004409897.1| - 0.00061 19.5 0.1 0.39 10.4 0.0 2.7 3 1 0 3 3 2 1 Domain of unknown function (DUF4423) Sigma70_r4 PF04545.16 gi|330835169|ref|YP_004409897.1| - 0.00095 18.6 0.0 0.29 10.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_Tnp_Tc3_2 PF01498.18 gi|330835169|ref|YP_004409897.1| - 0.0011 19.1 0.7 0.0026 17.9 0.1 1.9 2 0 0 2 2 2 1 Transposase HTH_38 PF13936.6 gi|330835169|ref|YP_004409897.1| - 0.0013 18.4 0.1 0.34 10.7 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|330835169|ref|YP_004409897.1| - 0.0015 18.6 0.0 0.47 10.6 0.0 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain Ribosomal_S25 PF03297.15 gi|330835169|ref|YP_004409897.1| - 0.0016 18.6 0.0 0.004 17.3 0.0 1.7 1 0 0 1 1 1 1 S25 ribosomal protein LexA_DNA_bind PF01726.16 gi|330835169|ref|YP_004409897.1| - 0.0069 16.1 0.1 1.1 9.1 0.0 2.5 2 1 0 2 2 2 1 LexA DNA binding domain HTH_30 PF13556.6 gi|330835169|ref|YP_004409897.1| - 0.011 15.5 0.1 0.14 12.0 0.0 2.2 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain HTH_34 PF13601.6 gi|330835169|ref|YP_004409897.1| - 0.032 14.4 0.0 0.16 12.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|330835169|ref|YP_004409897.1| - 0.036 14.0 0.1 0.9 9.5 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|330835169|ref|YP_004409897.1| - 0.041 13.9 0.0 9.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn helix HTH_17 PF12728.7 gi|330835169|ref|YP_004409897.1| - 0.043 14.0 0.1 0.31 11.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1902 PF08972.11 gi|330835169|ref|YP_004409897.1| - 0.048 13.6 0.2 0.62 10.1 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF1902) HTH_9 PF08221.11 gi|330835169|ref|YP_004409897.1| - 0.051 13.7 0.1 7.4 6.8 0.0 2.3 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.21 gi|330835169|ref|YP_004409897.1| - 0.064 12.9 0.1 1.8 8.3 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_22 PF13309.6 gi|330835169|ref|YP_004409897.1| - 0.082 13.0 0.1 27 4.9 0.0 3.2 2 1 1 3 3 3 0 HTH domain HTH_8 PF02954.19 gi|330835169|ref|YP_004409897.1| - 0.085 12.7 0.0 0.43 10.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family HTH_3 PF01381.22 gi|330835169|ref|YP_004409897.1| - 0.087 12.9 0.0 0.97 9.5 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix B-block_TFIIIC PF04182.12 gi|330835169|ref|YP_004409897.1| - 0.1 12.8 0.1 1.9 8.7 0.0 2.3 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_1 PF00126.27 gi|330835169|ref|YP_004409897.1| - 0.11 12.5 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family YdaS_antitoxin PF15943.5 gi|330835169|ref|YP_004409897.1| - 0.12 12.3 0.0 1 9.3 0.0 2.2 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_32 PF13565.6 gi|330835169|ref|YP_004409897.1| - 0.17 12.5 0.0 0.76 10.4 0.0 1.9 2 0 0 2 2 2 0 Homeodomain-like domain HTH_IclR PF09339.10 gi|330835169|ref|YP_004409897.1| - 0.17 11.7 0.0 0.55 10.1 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain Pkinase PF00069.25 gi|330835170|ref|YP_004409898.1| - 1.3e-27 96.8 0.0 2.3e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|330835170|ref|YP_004409898.1| - 6.3e-16 58.4 0.0 1.5e-15 57.2 0.0 1.6 1 1 0 1 1 1 1 Protein tyrosine kinase TPR_2 PF07719.17 gi|330835170|ref|YP_004409898.1| - 1e-05 25.3 5.4 0.0016 18.4 0.0 4.7 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_1 PF00515.28 gi|330835170|ref|YP_004409898.1| - 1.7e-05 24.4 4.7 0.00019 21.1 0.0 4.4 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_16 PF13432.6 gi|330835170|ref|YP_004409898.1| - 6.2e-05 23.6 0.1 3.5 8.4 0.3 3.5 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|330835170|ref|YP_004409898.1| - 0.00011 22.1 1.3 0.0029 17.7 0.0 3.6 4 0 0 4 4 3 1 Tetratricopeptide repeat PPR PF01535.20 gi|330835170|ref|YP_004409898.1| - 0.00024 21.1 7.7 1.3 9.4 0.0 5.1 5 0 0 5 5 5 2 PPR repeat TPR_12 PF13424.6 gi|330835170|ref|YP_004409898.1| - 0.00037 20.7 0.3 0.17 12.2 0.0 3.7 2 2 0 3 3 3 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|330835170|ref|YP_004409898.1| - 0.004 17.7 0.1 47 4.9 0.0 4.6 4 0 0 4 4 4 0 Tetratricopeptide repeat PPR_2 PF13041.6 gi|330835170|ref|YP_004409898.1| - 0.0071 16.5 3.3 0.12 12.5 0.6 3.8 5 0 0 5 5 4 1 PPR repeat family BTAD PF03704.17 gi|330835170|ref|YP_004409898.1| - 0.0076 16.7 0.2 12 6.3 0.1 3.4 3 0 0 3 3 3 0 Bacterial transcriptional activator domain TPR_19 PF14559.6 gi|330835170|ref|YP_004409898.1| - 0.009 16.5 0.3 22 5.6 0.0 3.3 3 0 0 3 3 3 0 Tetratricopeptide repeat Kdo PF06293.14 gi|330835170|ref|YP_004409898.1| - 0.012 15.0 0.0 0.025 14.0 0.0 1.5 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pox_ser-thr_kin PF05445.11 gi|330835170|ref|YP_004409898.1| - 0.015 14.3 0.2 0.048 12.6 0.0 1.8 2 1 0 2 2 2 0 Poxvirus serine/threonine protein kinase TPR_7 PF13176.6 gi|330835170|ref|YP_004409898.1| - 0.018 15.0 0.1 5.3 7.3 0.0 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat APH PF01636.23 gi|330835170|ref|YP_004409898.1| - 0.035 14.0 0.0 2.6 7.9 0.0 2.4 1 1 0 2 2 2 0 Phosphotransferase enzyme family ANAPC3 PF12895.7 gi|330835170|ref|YP_004409898.1| - 0.11 12.7 0.7 4.9 7.5 0.1 2.9 2 1 0 2 2 2 0 Anaphase-promoting complex, cyclosome, subunit 3 TPR_11 PF13414.6 gi|330835170|ref|YP_004409898.1| - 0.16 11.7 0.2 16 5.3 0.0 3.6 3 1 1 4 4 4 0 TPR repeat CBS PF00571.28 gi|330835171|ref|YP_004409899.1| - 2.5e-45 152.7 9.5 1.2e-12 48.0 0.1 4.1 4 0 0 4 4 4 4 CBS domain BiPBP_C PF06832.12 gi|330835171|ref|YP_004409899.1| - 0.0057 16.7 0.0 0.34 11.0 0.0 2.2 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family T2SSE_N PF05157.15 gi|330835171|ref|YP_004409899.1| - 0.04 14.2 0.1 0.23 11.7 0.0 2.4 3 1 0 3 3 3 0 Type II secretion system (T2SS), protein E, N-terminal domain AflR PF08493.10 gi|330835171|ref|YP_004409899.1| - 0.09 12.2 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 Aflatoxin regulatory protein Topoisom_bac PF01131.20 gi|330835172|ref|YP_004409900.1| - 7.2e-110 367.8 0.0 1e-109 367.3 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|330835172|ref|YP_004409900.1| - 5e-14 52.4 0.0 2.9e-13 49.9 0.0 2.1 2 0 0 2 2 2 1 Toprim domain Toprim_Crpt PF13342.6 gi|330835172|ref|YP_004409900.1| - 6.3e-14 51.7 2.7 6.3e-14 51.7 2.7 2.7 3 0 0 3 3 3 1 C-terminal repeat of topoisomerase DUF3945 PF13101.6 gi|330835172|ref|YP_004409900.1| - 0.0063 16.2 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF3945) HTH_45 PF14947.6 gi|330835172|ref|YP_004409900.1| - 0.13 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Radical_SAM PF04055.21 gi|330835175|ref|YP_004409903.1| - 1e-08 35.7 0.0 1.8e-08 34.9 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Lactamase_B PF00753.27 gi|330835177|ref|YP_004409905.1| - 2.6e-06 27.6 3.7 1.4e-05 25.2 3.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330835177|ref|YP_004409905.1| - 0.037 13.6 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain RTTN_N PF14726.6 gi|330835177|ref|YP_004409905.1| - 0.05 14.4 0.0 0.12 13.2 0.0 1.6 2 0 0 2 2 2 0 Rotatin, an armadillo repeat protein, centriole functioning kleA_kleC PF17383.2 gi|330835178|ref|YP_004409906.1| - 0.081 13.3 0.6 0.22 11.9 0.3 1.8 1 1 1 2 2 2 0 Uncharacterized KorC regulated protein A DUF4330 PF14221.6 gi|330835179|ref|YP_004409907.1| - 0.027 14.7 0.9 0.041 14.1 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Pilin_N PF07790.11 gi|330835179|ref|YP_004409907.1| - 0.057 14.3 5.5 0.11 13.4 5.5 1.5 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF4352 PF11611.8 gi|330835179|ref|YP_004409907.1| - 0.072 13.4 0.1 0.11 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) Pro-kuma_activ PF09286.11 gi|330835181|ref|YP_004409909.1| - 1.9e-20 73.6 0.1 4.1e-20 72.5 0.1 1.4 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|330835181|ref|YP_004409909.1| - 2e-06 27.3 1.5 4e-06 26.3 1.5 1.5 1 0 0 1 1 1 1 Subtilase family DUF4064 PF13273.6 gi|330835181|ref|YP_004409909.1| - 0.033 14.5 0.2 0.13 12.5 0.2 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) Big_7 PF17957.1 gi|330835181|ref|YP_004409909.1| - 0.033 14.9 0.2 0.033 14.9 0.2 5.4 5 0 0 5 5 5 0 Bacterial Ig domain Lyase_8_N PF08124.11 gi|330835181|ref|YP_004409909.1| - 0.083 11.8 0.2 0.14 11.0 0.2 1.2 1 0 0 1 1 1 0 Polysaccharide lyase family 8, N terminal alpha-helical domain MFS_1 PF07690.16 gi|330835182|ref|YP_004409910.1| - 2.4e-29 102.4 40.0 2.1e-18 66.4 15.8 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835182|ref|YP_004409910.1| - 0.082 11.8 21.8 0.094 11.6 10.6 2.3 2 1 0 2 2 2 0 Sugar (and other) transporter LDcluster4 PF18306.1 gi|330835183|ref|YP_004409911.1| - 2e-15 56.7 0.0 2.3e-15 56.5 0.0 1.0 1 0 0 1 1 1 1 SLOG cluster4 family LSDAT_prok PF18171.1 gi|330835183|ref|YP_004409911.1| - 0.0021 17.3 0.0 0.0025 17.1 0.0 1.2 1 0 0 1 1 1 1 SLOG in TRPM, prokaryote DNA_processg_A PF02481.15 gi|330835183|ref|YP_004409911.1| - 0.04 13.2 0.0 4.5 6.5 0.0 2.1 2 0 0 2 2 2 0 DNA recombination-mediator protein A Methyltransf_11 PF08241.12 gi|330835184|ref|YP_004409912.1| - 3.7e-11 43.5 0.0 6.2e-11 42.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330835184|ref|YP_004409912.1| - 3.9e-10 40.3 0.0 6.5e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330835184|ref|YP_004409912.1| - 6.1e-07 29.0 0.0 2e-06 27.3 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|330835184|ref|YP_004409912.1| - 0.00018 21.3 0.0 0.0012 18.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330835184|ref|YP_004409912.1| - 0.00045 20.9 0.0 0.00092 19.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330835184|ref|YP_004409912.1| - 0.00058 19.4 0.0 0.00093 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|330835184|ref|YP_004409912.1| - 0.00077 19.3 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|330835184|ref|YP_004409912.1| - 0.0016 18.3 0.0 0.0082 16.0 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_9 PF08003.11 gi|330835184|ref|YP_004409912.1| - 0.0064 15.5 0.0 0.053 12.4 0.0 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|330835184|ref|YP_004409912.1| - 0.037 13.5 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB Pyr_redox_2 PF07992.14 gi|330835185|ref|YP_004409913.1| - 3.7e-57 193.8 0.2 5.8e-57 193.2 0.2 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|330835185|ref|YP_004409913.1| - 3.6e-28 98.0 0.2 6.2e-28 97.3 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|330835185|ref|YP_004409913.1| - 7.4e-17 61.5 1.2 4.1e-16 59.1 1.2 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835185|ref|YP_004409913.1| - 5.8e-12 46.0 2.1 8.9e-11 42.2 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330835185|ref|YP_004409913.1| - 5.4e-07 29.0 7.2 2.1e-05 23.8 0.6 3.9 2 2 0 3 3 3 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|330835185|ref|YP_004409913.1| - 6e-05 21.9 0.4 0.29 9.8 0.0 2.9 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.7 gi|330835185|ref|YP_004409913.1| - 0.0006 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase K_oxygenase PF13434.6 gi|330835185|ref|YP_004409913.1| - 0.036 13.2 0.1 0.29 10.2 0.0 2.3 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.24 gi|330835185|ref|YP_004409913.1| - 0.089 11.9 3.5 1.6 7.7 1.5 2.7 2 1 0 2 2 2 0 FAD binding domain zf-FCS PF06467.14 gi|330835186|ref|YP_004409914.1| - 5.9e-06 26.1 3.1 7.7e-06 25.7 3.1 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif YHS PF04945.13 gi|330835186|ref|YP_004409914.1| - 1.1e-05 25.4 1.1 1.7e-05 24.8 1.1 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|330835186|ref|YP_004409914.1| - 0.00056 20.2 4.7 0.00075 19.8 4.7 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|330835186|ref|YP_004409914.1| - 0.0021 18.7 3.7 0.0025 18.5 3.7 1.1 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DNA_RNApol_7kD PF03604.13 gi|330835186|ref|YP_004409914.1| - 0.0036 16.9 3.3 0.012 15.3 0.1 2.2 2 0 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit Ta0938 PF11494.8 gi|330835186|ref|YP_004409914.1| - 0.0093 16.2 0.6 0.0099 16.1 0.6 1.1 1 0 0 1 1 1 1 Ta0938 zinc_ribbon_2 PF13240.6 gi|330835186|ref|YP_004409914.1| - 0.065 13.0 6.3 0.1 12.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|330835186|ref|YP_004409914.1| - 0.1 13.1 4.8 0.45 11.0 2.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-Sec23_Sec24 PF04810.15 gi|330835186|ref|YP_004409914.1| - 0.25 11.4 7.3 0.99 9.5 7.3 1.8 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger HTH_10 PF04967.12 gi|330835187|ref|YP_004409915.1| - 1.3e-17 63.3 0.1 2.3e-17 62.5 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|330835187|ref|YP_004409915.1| - 0.0011 18.5 0.0 0.0021 17.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|330835187|ref|YP_004409915.1| - 0.036 14.3 0.0 0.09 13.0 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|330835187|ref|YP_004409915.1| - 0.13 12.4 0.1 0.29 11.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase MFS_1 PF07690.16 gi|330835191|ref|YP_004409919.1| - 4.6e-54 183.7 42.5 4.6e-54 183.7 42.5 1.9 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835191|ref|YP_004409919.1| - 2.4e-07 30.0 8.7 2.4e-07 30.0 8.7 3.0 2 1 1 4 4 4 1 Sugar (and other) transporter MFS_3 PF05977.13 gi|330835191|ref|YP_004409919.1| - 0.0022 16.4 16.5 0.0024 16.3 6.9 2.6 2 1 0 2 2 2 2 Transmembrane secretion effector Sugar_tr PF00083.24 gi|330835193|ref|YP_004409921.1| - 3.5e-22 78.9 36.9 2.7e-20 72.7 12.4 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|330835193|ref|YP_004409921.1| - 1.4e-18 67.0 55.7 1.4e-18 67.0 55.7 1.8 1 1 1 2 2 2 1 Major Facilitator Superfamily UPF0767 PF15990.5 gi|330835193|ref|YP_004409921.1| - 0.16 12.1 0.1 30 4.9 0.0 2.6 2 0 0 2 2 2 0 UPF0767 family Cep57_CLD_2 PF14197.6 gi|330835194|ref|YP_004409922.1| - 0.0093 16.0 2.2 1.7 8.8 0.2 2.3 2 0 0 2 2 2 2 Centrosome localisation domain of PPC89 DAP3 PF10236.9 gi|330835194|ref|YP_004409922.1| - 0.032 13.4 0.8 0.23 10.6 0.1 1.9 1 1 1 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DUF3662 PF12401.8 gi|330835194|ref|YP_004409922.1| - 0.033 14.6 0.0 0.071 13.5 0.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2662) BLACT_WH PF17778.1 gi|330835194|ref|YP_004409922.1| - 0.067 13.2 0.4 0.28 11.2 0.1 2.2 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain FeoC PF09012.10 gi|330835194|ref|YP_004409922.1| - 0.087 12.9 0.2 0.29 11.2 0.0 1.9 2 0 0 2 2 2 0 FeoC like transcriptional regulator TFA2_Winged_2 PF18121.1 gi|330835194|ref|YP_004409922.1| - 0.091 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 SMC_Nse1 PF07574.13 gi|330835194|ref|YP_004409922.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex AAA_16 PF13191.6 gi|330835195|ref|YP_004409923.1| - 0.0019 18.6 0.0 0.0041 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330835195|ref|YP_004409923.1| - 0.0033 17.7 0.0 0.011 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|330835195|ref|YP_004409923.1| - 0.015 15.6 0.1 0.25 11.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|330835195|ref|YP_004409923.1| - 0.019 15.5 0.0 0.085 13.4 0.0 2.0 2 0 0 2 2 2 0 ABC transporter AAA PF00004.29 gi|330835195|ref|YP_004409923.1| - 0.04 14.3 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|330835195|ref|YP_004409923.1| - 0.064 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|330835195|ref|YP_004409923.1| - 0.076 12.2 0.1 0.16 11.2 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Arf PF00025.21 gi|330835195|ref|YP_004409923.1| - 0.14 11.6 0.1 11 5.4 0.1 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_14 PF13173.6 gi|330835195|ref|YP_004409923.1| - 0.15 12.1 0.4 1.6 8.8 0.0 2.6 2 1 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|330835195|ref|YP_004409923.1| - 0.19 11.3 0.0 5.2 6.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain Sugar_tr PF00083.24 gi|330835196|ref|YP_004409924.1| - 5.5e-54 183.7 18.7 7.5e-54 183.3 18.7 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330835196|ref|YP_004409924.1| - 2e-22 79.6 38.9 8e-22 77.6 32.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily PadR PF03551.14 gi|330835197|ref|YP_004409925.1| - 4.7e-19 68.1 0.4 1.2e-18 66.9 0.1 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF505 PF04458.12 gi|330835197|ref|YP_004409925.1| - 7.6e-07 27.9 0.0 9.7e-07 27.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) HTH_34 PF13601.6 gi|330835197|ref|YP_004409925.1| - 0.00011 22.3 0.1 0.00038 20.6 0.0 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain DUF4364 PF14277.6 gi|330835197|ref|YP_004409925.1| - 0.00018 21.3 0.3 0.00032 20.5 0.3 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|330835197|ref|YP_004409925.1| - 0.00025 20.9 0.1 0.00084 19.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|330835197|ref|YP_004409925.1| - 0.0025 18.2 0.2 0.029 14.8 0.0 2.3 3 0 0 3 3 3 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|330835197|ref|YP_004409925.1| - 0.022 14.8 0.0 0.03 14.4 0.0 1.3 1 1 0 1 1 1 0 Replication-relaxation Mrr_N PF14338.6 gi|330835197|ref|YP_004409925.1| - 0.029 14.5 0.2 0.5 10.5 0.0 2.6 3 0 0 3 3 3 0 Mrr N-terminal domain DUF1495 PF07381.11 gi|330835197|ref|YP_004409925.1| - 0.048 13.5 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Stork_head PF10264.9 gi|330835197|ref|YP_004409925.1| - 0.058 13.6 0.1 0.11 12.7 0.0 1.5 2 0 0 2 2 2 0 Winged helix Storkhead-box1 domain DUF3116 PF11313.8 gi|330835197|ref|YP_004409925.1| - 0.071 13.0 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) RTP PF02334.16 gi|330835197|ref|YP_004409925.1| - 0.086 13.5 0.1 0.23 12.1 0.1 1.8 1 1 0 1 1 1 0 Replication terminator protein HTH_12 PF08461.10 gi|330835197|ref|YP_004409925.1| - 0.49 10.4 4.3 0.44 10.5 0.6 2.6 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain ABC_tran PF00005.27 gi|330835198|ref|YP_004409926.1| - 5.9e-26 91.6 0.0 9.2e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835198|ref|YP_004409926.1| - 4.9e-12 46.3 0.0 3.5e-06 27.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|330835198|ref|YP_004409926.1| - 0.00051 20.5 0.0 0.00073 20.0 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|330835198|ref|YP_004409926.1| - 0.00074 20.1 0.0 0.001 19.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|330835198|ref|YP_004409926.1| - 0.0021 17.8 0.0 0.023 14.4 0.1 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|330835198|ref|YP_004409926.1| - 0.0027 17.4 0.1 0.0051 16.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|330835198|ref|YP_004409926.1| - 0.0056 16.6 0.0 0.011 15.7 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|330835198|ref|YP_004409926.1| - 0.0083 15.9 0.0 0.015 15.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|330835198|ref|YP_004409926.1| - 0.0091 15.9 0.3 0.52 10.2 0.1 2.3 2 0 0 2 2 2 1 NTPase Rad17 PF03215.15 gi|330835198|ref|YP_004409926.1| - 0.01 15.8 0.0 0.026 14.4 0.0 1.7 2 0 0 2 2 2 0 Rad17 P-loop domain KdpD PF02702.17 gi|330835198|ref|YP_004409926.1| - 0.03 13.8 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain AAA_13 PF13166.6 gi|330835198|ref|YP_004409926.1| - 0.32 9.6 0.0 0.45 9.1 0.0 1.1 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|330835199|ref|YP_004409927.1| - 3e-11 43.1 25.4 3e-11 43.1 25.4 2.0 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330835199|ref|YP_004409927.1| - 9.2e-05 21.7 27.2 9.2e-05 21.7 27.2 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein Romo1 PF10247.9 gi|330835199|ref|YP_004409927.1| - 0.28 11.6 4.0 1.5 9.2 0.0 3.2 3 0 0 3 3 3 0 Reactive mitochondrial oxygen species modulator 1 Ammonium_transp PF00909.21 gi|330835200|ref|YP_004409928.1| - 1.1e-92 310.9 22.4 1.3e-92 310.6 22.4 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF3188 PF11384.8 gi|330835200|ref|YP_004409928.1| - 0.21 11.3 0.0 0.21 11.3 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) MFS_1 PF07690.16 gi|330835201|ref|YP_004409929.1| - 1.5e-56 191.8 49.9 1e-54 185.8 48.8 2.3 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835201|ref|YP_004409929.1| - 1.6e-10 40.5 13.7 1.6e-10 40.5 13.7 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|330835201|ref|YP_004409929.1| - 9.2e-09 34.2 18.3 1.1e-08 34.0 9.5 2.3 2 0 0 2 2 2 2 Transmembrane secretion effector Aminotran_1_2 PF00155.21 gi|330835202|ref|YP_004409930.1| - 3.1e-22 79.3 0.0 3.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|330835202|ref|YP_004409930.1| - 0.0043 15.9 0.0 0.0053 15.6 0.0 1.1 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase NTPase_I-T PF01931.18 gi|330835203|ref|YP_004409931.1| - 1.1e-44 152.1 0.0 1.3e-44 151.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 VitK2_biosynth PF02621.14 gi|330835204|ref|YP_004409932.1| - 4.2e-59 200.2 0.0 4.7e-59 200.1 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis TFA2_Winged_2 PF18121.1 gi|330835204|ref|YP_004409932.1| - 0.072 12.8 0.1 0.29 10.8 0.1 2.0 2 0 0 2 2 2 0 TFA2 Winged helix domain 2 Cation_efflux PF01545.21 gi|330835207|ref|YP_004409935.1| - 1.1e-13 51.3 16.3 1.6e-13 50.8 16.3 1.2 1 0 0 1 1 1 1 Cation efflux family DUF3131 PF11329.8 gi|330835207|ref|YP_004409935.1| - 0.11 11.6 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3131) YfzA PF14118.6 gi|330835208|ref|YP_004409936.1| - 0.024 15.0 0.9 0.03 14.7 0.8 1.3 1 1 0 1 1 1 0 YfzA-like protein CLPTM1 PF05602.12 gi|330835208|ref|YP_004409936.1| - 0.16 10.9 0.1 0.16 10.9 0.1 1.0 1 0 0 1 1 1 0 Cleft lip and palate transmembrane protein 1 (CLPTM1) EMG1 PF03587.14 gi|330835210|ref|YP_004409938.1| - 4.8e-38 130.8 0.0 5.4e-38 130.6 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.16 gi|330835211|ref|YP_004409939.1| - 5.1e-12 45.9 0.1 7.6e-12 45.4 0.1 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain CRS1_YhbY PF01985.21 gi|330835212|ref|YP_004409940.1| - 5.6e-09 36.1 2.4 5.8e-09 36.0 2.4 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain RTT107_BRCT_6 PF16771.5 gi|330835212|ref|YP_004409940.1| - 0.013 15.7 0.4 0.013 15.7 0.4 1.1 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain Met_10 PF02475.16 gi|330835213|ref|YP_004409941.1| - 1.1e-23 84.0 0.0 1.4e-23 83.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|330835213|ref|YP_004409941.1| - 0.0002 22.0 0.0 0.00036 21.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330835213|ref|YP_004409941.1| - 0.00091 18.6 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|330835213|ref|YP_004409941.1| - 0.0092 16.6 0.0 0.019 15.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330835213|ref|YP_004409941.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Pyr_redox_2 PF07992.14 gi|330835214|ref|YP_004409942.1| - 7.1e-32 110.8 0.9 9.4e-32 110.4 0.9 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330835214|ref|YP_004409942.1| - 6.8e-23 81.4 0.2 2.4e-21 76.3 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835214|ref|YP_004409942.1| - 4.1e-16 59.3 0.4 2.1e-12 47.4 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|330835214|ref|YP_004409942.1| - 1.7e-08 34.0 1.2 2.5e-07 30.2 0.0 2.9 3 1 1 4 4 4 1 L-lysine 6-monooxygenase (NADPH-requiring) HI0933_like PF03486.14 gi|330835214|ref|YP_004409942.1| - 1.7e-08 33.6 0.5 0.00012 20.9 0.0 3.8 5 0 0 5 5 5 2 HI0933-like protein DAO PF01266.24 gi|330835214|ref|YP_004409942.1| - 3.6e-06 26.8 2.5 0.022 14.3 0.1 3.6 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|330835214|ref|YP_004409942.1| - 7.8e-06 26.3 0.2 0.0013 19.1 0.1 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|330835214|ref|YP_004409942.1| - 3.1e-05 24.1 0.1 0.00086 19.5 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|330835214|ref|YP_004409942.1| - 8.8e-05 22.0 3.2 0.00033 20.1 0.2 2.7 2 1 1 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|330835214|ref|YP_004409942.1| - 0.00056 19.2 0.4 0.013 14.8 0.1 2.9 3 0 0 3 3 3 1 Thi4 family FAD_binding_2 PF00890.24 gi|330835214|ref|YP_004409942.1| - 0.001 18.2 2.3 0.24 10.4 0.0 3.4 3 1 0 3 3 3 1 FAD binding domain FMO-like PF00743.19 gi|330835214|ref|YP_004409942.1| - 0.0011 17.4 0.1 0.003 16.1 0.0 1.7 2 0 0 2 2 2 1 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.19 gi|330835214|ref|YP_004409942.1| - 0.011 15.0 0.3 2.2 7.5 0.1 3.0 2 1 1 3 3 3 0 FAD binding domain Spermine_synth PF01564.17 gi|330835214|ref|YP_004409942.1| - 0.019 14.4 1.0 0.85 9.0 0.1 2.3 2 0 0 2 2 2 0 Spermine/spermidine synthase domain NAD_kinase PF01513.21 gi|330835216|ref|YP_004409944.1| - 1.2e-19 70.7 0.8 3.1e-19 69.3 0.8 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|330835216|ref|YP_004409944.1| - 0.069 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PIN_6 PF17146.4 gi|330835217|ref|YP_004409945.1| - 1.1e-05 25.8 0.1 1.7e-05 25.2 0.1 1.3 1 0 0 1 1 1 1 PIN domain of ribonuclease zf-C3HC4_3 PF13920.6 gi|330835217|ref|YP_004409945.1| - 0.0006 19.6 1.1 0.00089 19.1 1.1 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.10 gi|330835217|ref|YP_004409945.1| - 0.0029 17.7 5.4 0.0088 16.1 5.4 1.7 1 1 0 1 1 1 1 Zinc ribbon domain NOB1_Zn_bind PF08772.11 gi|330835217|ref|YP_004409945.1| - 0.0074 16.4 0.9 0.013 15.6 0.9 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-RING_5 PF14634.6 gi|330835217|ref|YP_004409945.1| - 0.014 15.3 1.7 0.023 14.7 1.7 1.3 1 0 0 1 1 1 0 zinc-RING finger domain TF_Zn_Ribbon PF08271.12 gi|330835217|ref|YP_004409945.1| - 0.015 14.8 2.2 0.45 10.1 0.1 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding DZR PF12773.7 gi|330835217|ref|YP_004409945.1| - 0.021 14.8 0.1 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.11 gi|330835217|ref|YP_004409945.1| - 0.05 13.7 0.3 0.073 13.2 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.19 gi|330835217|ref|YP_004409945.1| - 0.091 12.8 2.6 0.15 12.1 2.6 1.6 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ADK_lid PF05191.14 gi|330835217|ref|YP_004409945.1| - 0.099 12.6 2.9 0.19 11.8 2.9 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid TFIIS_C PF01096.18 gi|330835217|ref|YP_004409945.1| - 0.19 11.6 2.6 0.33 10.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF4428 PF14471.6 gi|330835217|ref|YP_004409945.1| - 0.2 11.6 2.0 2.6 8.0 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zf-C2H2_4 PF13894.6 gi|330835217|ref|YP_004409945.1| - 0.29 12.1 2.7 5.5 8.1 0.3 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|330835217|ref|YP_004409945.1| - 0.42 11.2 2.2 3.8 8.2 0.3 2.4 2 0 0 2 2 2 0 Zinc finger, C2H2 type Prim_Zn_Ribbon PF08273.12 gi|330835217|ref|YP_004409945.1| - 0.46 10.8 6.3 0.75 10.1 1.1 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.6 gi|330835217|ref|YP_004409945.1| - 0.76 9.3 4.6 0.96 8.9 0.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|330835217|ref|YP_004409945.1| - 0.97 9.1 2.7 3.2 7.4 0.3 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|330835217|ref|YP_004409945.1| - 1.4 8.9 4.8 1.4 8.8 0.8 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Aminotran_5 PF00266.19 gi|330835219|ref|YP_004409947.1| - 7.9e-45 153.4 0.0 1.5e-44 152.5 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|330835219|ref|YP_004409947.1| - 0.00034 19.9 0.0 0.018 14.3 0.0 2.2 2 0 0 2 2 2 2 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|330835219|ref|YP_004409947.1| - 0.016 13.8 0.0 0.023 13.2 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|330835219|ref|YP_004409947.1| - 0.034 13.5 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RmlD_sub_bind PF04321.17 gi|330835223|ref|YP_004409951.1| - 5.8e-20 71.6 0.0 7.5e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|330835223|ref|YP_004409951.1| - 2.6e-08 33.7 0.0 4.4e-08 32.9 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family Hydrolase PF00702.26 gi|330835224|ref|YP_004409952.1| - 1.9e-14 54.4 0.0 2.4e-13 50.9 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|330835224|ref|YP_004409952.1| - 2.1e-14 54.0 0.0 3.9e-14 53.1 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|330835224|ref|YP_004409952.1| - 0.0005 20.1 0.0 0.0053 16.8 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330835224|ref|YP_004409952.1| - 0.024 15.0 0.0 0.093 13.1 0.0 2.0 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase MgtE_N PF03448.17 gi|330835224|ref|YP_004409952.1| - 0.11 13.2 0.1 2.1 9.0 0.0 2.5 3 0 0 3 3 3 0 MgtE intracellular N domain MTS PF05175.14 gi|330835225|ref|YP_004409953.1| - 1.5e-12 47.4 0.0 1.9e-12 47.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|330835225|ref|YP_004409953.1| - 5.8e-10 39.2 0.0 7.3e-10 38.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|330835225|ref|YP_004409953.1| - 1.7e-09 38.3 0.2 3.4e-09 37.3 0.2 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330835225|ref|YP_004409953.1| - 3.5e-06 27.6 0.1 7.1e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330835225|ref|YP_004409953.1| - 3.4e-05 23.7 0.0 5.5e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330835225|ref|YP_004409953.1| - 0.00012 22.7 0.0 0.00018 22.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|330835225|ref|YP_004409953.1| - 0.00077 18.9 0.0 0.001 18.5 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|330835225|ref|YP_004409953.1| - 0.0026 17.2 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|330835225|ref|YP_004409953.1| - 0.0074 16.0 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.6 gi|330835225|ref|YP_004409953.1| - 0.09 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Hydrolase_3 PF08282.12 gi|330835226|ref|YP_004409954.1| - 1.7e-20 73.9 0.1 4.8e-15 56.0 0.2 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|330835226|ref|YP_004409954.1| - 1.1e-05 25.2 0.0 0.0075 15.8 0.0 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase AP_endonuc_2 PF01261.24 gi|330835227|ref|YP_004409955.1| - 1.6e-27 96.4 0.1 2e-27 96.0 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.21 gi|330835227|ref|YP_004409955.1| - 0.0035 17.7 1.0 0.12 12.8 0.1 2.9 1 1 2 3 3 3 1 Radical SAM superfamily UvdE PF03851.14 gi|330835227|ref|YP_004409955.1| - 0.0063 15.8 0.0 0.0078 15.5 0.0 1.3 1 1 0 1 1 1 1 UV-endonuclease UvdE DeoC PF01791.9 gi|330835227|ref|YP_004409955.1| - 0.051 13.2 0.0 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 DeoC/LacD family aldolase VPS13_C PF16909.5 gi|330835227|ref|YP_004409955.1| - 0.059 13.1 0.0 0.12 12.1 0.0 1.5 2 0 0 2 2 2 0 Vacuolar-sorting-associated 13 protein C-terminal PdxJ PF03740.13 gi|330835227|ref|YP_004409955.1| - 0.13 11.3 0.0 0.36 9.9 0.0 1.7 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthesis protein PdxJ Peptidase_M61 PF05299.12 gi|330835228|ref|YP_004409956.1| - 7.7e-32 110.2 0.6 1.2e-31 109.5 0.6 1.3 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_M61_N PF17899.1 gi|330835228|ref|YP_004409956.1| - 2.6e-12 47.2 0.0 1.9e-11 44.3 0.0 2.3 1 1 0 1 1 1 1 Peptidase M61 N-terminal domain PDZ_6 PF17820.1 gi|330835228|ref|YP_004409956.1| - 5.5e-07 29.3 0.1 1.4e-06 28.0 0.1 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|330835228|ref|YP_004409956.1| - 0.00013 22.2 0.1 0.00062 20.0 0.1 2.2 1 1 0 1 1 1 1 PDZ domain GRASP55_65 PF04495.14 gi|330835228|ref|YP_004409956.1| - 0.0059 16.9 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 GRASP55/65 PDZ-like domain Peptidase_M9 PF01752.17 gi|330835228|ref|YP_004409956.1| - 0.072 12.3 0.2 0.12 11.6 0.2 1.3 1 0 0 1 1 1 0 Collagenase PDZ PF00595.24 gi|330835228|ref|YP_004409956.1| - 0.076 13.4 0.0 0.21 12.0 0.0 1.8 1 0 0 1 1 1 0 PDZ domain Tricorn_PDZ PF14685.6 gi|330835228|ref|YP_004409956.1| - 0.14 12.1 0.1 0.31 11.0 0.1 1.6 1 0 0 1 1 1 0 Tricorn protease PDZ domain Peptidase_M1 PF01433.20 gi|330835228|ref|YP_004409956.1| - 0.21 11.2 1.0 1.2 8.7 1.0 2.1 1 1 0 1 1 1 0 Peptidase family M1 domain FAD_binding_4 PF01565.23 gi|330835229|ref|YP_004409957.1| - 1.1e-34 119.2 0.0 2.1e-34 118.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|330835229|ref|YP_004409957.1| - 8.4e-09 35.9 2.0 1.6e-08 34.9 2.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835229|ref|YP_004409957.1| - 2.1e-07 31.3 1.4 4.3e-07 30.3 1.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835229|ref|YP_004409957.1| - 5.9e-06 26.8 4.1 1.4e-05 25.6 4.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835229|ref|YP_004409957.1| - 4.3e-05 24.4 3.8 0.00013 22.8 3.8 1.9 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|330835229|ref|YP_004409957.1| - 0.00015 21.9 7.6 0.0051 17.0 9.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330835229|ref|YP_004409957.1| - 0.00042 20.5 3.9 0.088 13.0 0.2 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|330835229|ref|YP_004409957.1| - 0.00075 19.2 0.0 0.0063 16.2 0.0 2.4 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain Fer4_10 PF13237.6 gi|330835229|ref|YP_004409957.1| - 0.00084 19.4 11.4 0.03 14.4 12.6 2.4 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330835229|ref|YP_004409957.1| - 0.0043 16.8 2.4 1.3 8.8 0.3 2.4 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|330835229|ref|YP_004409957.1| - 0.0046 17.1 7.4 0.065 13.4 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain DUF1779 PF08680.10 gi|330835229|ref|YP_004409957.1| - 0.024 14.9 0.3 0.81 9.8 0.4 2.5 2 0 0 2 2 2 0 TATA-box binding Fer4 PF00037.27 gi|330835229|ref|YP_004409957.1| - 0.027 14.3 17.2 0.1 12.5 4.7 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Enoyl_reductase PF12241.8 gi|330835229|ref|YP_004409957.1| - 0.045 13.1 0.5 0.091 12.1 0.5 1.5 1 0 0 1 1 1 0 Trans-2-enoyl-CoA reductase catalytic region Fer4_2 PF12797.7 gi|330835229|ref|YP_004409957.1| - 0.4 10.9 12.8 0.049 13.7 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330835229|ref|YP_004409957.1| - 2.5 9.0 8.1 12 6.9 0.7 3.1 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835229|ref|YP_004409957.1| - 5.4 7.3 17.2 0.031 14.3 4.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain HIT PF01230.23 gi|330835230|ref|YP_004409958.1| - 4e-23 82.0 0.1 9.7e-23 80.8 0.0 1.6 2 0 0 2 2 2 1 HIT domain DcpS_C PF11969.8 gi|330835230|ref|YP_004409958.1| - 3e-12 47.0 0.0 4.6e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding Eryth_link_C PF16915.5 gi|330835231|ref|YP_004409959.1| - 0.02 14.9 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Annelid erythrocruorin linker subunit C-terminus SNARE_assoc PF09335.11 gi|330835232|ref|YP_004409960.1| - 2.9e-05 24.6 8.6 3.6e-05 24.3 6.5 2.2 2 1 0 2 2 2 1 SNARE associated Golgi protein SLATT_fungal PF18142.1 gi|330835232|ref|YP_004409960.1| - 0.15 12.0 0.5 0.43 10.6 0.0 1.9 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain NUDIX PF00293.28 gi|330835233|ref|YP_004409961.1| - 4.4e-17 62.4 0.0 5.6e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Chlor_dismutase PF06778.12 gi|330835234|ref|YP_004409962.1| - 9.2e-45 152.6 0.8 5.5e-44 150.1 0.1 1.8 1 1 1 2 2 2 2 Chlorite dismutase RPA_interact_M PF14767.6 gi|330835235|ref|YP_004409963.1| - 1.8 9.2 4.7 4.7 7.9 0.1 3.1 3 0 0 3 3 3 0 Replication protein A interacting middle UDG PF03167.19 gi|330835236|ref|YP_004409964.1| - 1.8e-29 102.7 0.0 2.2e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Methyltransf_25 PF13649.6 gi|330835237|ref|YP_004409965.1| - 1e-15 58.2 0.0 1.9e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330835237|ref|YP_004409965.1| - 5.4e-12 45.8 0.0 8.6e-12 45.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330835237|ref|YP_004409965.1| - 1.1e-10 42.0 0.0 2.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330835237|ref|YP_004409965.1| - 8.6e-10 38.7 0.0 4e-09 36.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330835237|ref|YP_004409965.1| - 3.8e-08 34.0 0.0 6.4e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330835237|ref|YP_004409965.1| - 4.9e-06 26.0 0.1 8.3e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|330835237|ref|YP_004409965.1| - 5.9e-06 25.9 0.0 9.4e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|330835237|ref|YP_004409965.1| - 3.1e-05 23.5 0.2 4.9e-05 22.8 0.2 1.5 1 0 0 1 1 1 1 Tellurite resistance protein TehB CMAS PF02353.20 gi|330835237|ref|YP_004409965.1| - 0.00016 21.1 0.0 0.00028 20.3 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.13 gi|330835237|ref|YP_004409965.1| - 0.0016 18.8 0.1 0.0041 17.5 0.1 1.8 1 1 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase MetW PF07021.12 gi|330835237|ref|YP_004409965.1| - 0.0035 17.0 0.1 0.0079 15.8 0.1 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW PrmA PF06325.13 gi|330835237|ref|YP_004409965.1| - 0.0052 16.2 0.0 0.0095 15.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|330835237|ref|YP_004409965.1| - 0.0059 16.5 0.0 0.017 15.1 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain N2227 PF07942.12 gi|330835237|ref|YP_004409965.1| - 0.019 14.1 0.1 0.073 12.2 0.0 2.0 2 1 0 2 2 2 0 N2227-like protein Methyltransf_9 PF08003.11 gi|330835237|ref|YP_004409965.1| - 0.05 12.5 0.1 0.07 12.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_15 PF09445.10 gi|330835237|ref|YP_004409965.1| - 0.057 13.0 0.0 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase ADH_zinc_N PF00107.26 gi|330835237|ref|YP_004409965.1| - 0.14 12.1 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Lys_export PF03956.13 gi|330835238|ref|YP_004409966.1| - 1.1e-41 142.4 15.8 1.1e-41 142.4 15.8 2.1 2 0 0 2 2 2 2 Lysine exporter LysO HTH_5 PF01022.20 gi|330835239|ref|YP_004409967.1| - 1.7e-11 43.8 0.0 2.5e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|330835239|ref|YP_004409967.1| - 2.1e-07 30.9 0.0 3.3e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|330835239|ref|YP_004409967.1| - 2.6e-06 26.9 0.8 1.1e-05 24.9 0.2 2.2 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|330835239|ref|YP_004409967.1| - 5.1e-06 26.3 0.0 7.4e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 HTH domain MarR PF01047.22 gi|330835239|ref|YP_004409967.1| - 6.4e-05 22.8 0.0 0.0001 22.1 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|330835239|ref|YP_004409967.1| - 8.4e-05 22.4 0.0 0.00011 22.0 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330835239|ref|YP_004409967.1| - 8.8e-05 22.3 0.1 0.00012 21.9 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|330835239|ref|YP_004409967.1| - 0.00064 19.7 0.5 0.00077 19.4 0.5 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_12 PF08461.10 gi|330835239|ref|YP_004409967.1| - 0.00074 19.4 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|330835239|ref|YP_004409967.1| - 0.0022 18.5 0.1 0.0027 18.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|330835239|ref|YP_004409967.1| - 0.0024 18.2 0.2 0.003 17.9 0.2 1.3 1 1 0 1 1 1 1 Penicillinase repressor Fe_dep_repress PF01325.19 gi|330835239|ref|YP_004409967.1| - 0.0066 16.6 0.0 0.016 15.3 0.0 1.7 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|330835239|ref|YP_004409967.1| - 0.0079 16.3 0.0 0.04 14.0 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|330835239|ref|YP_004409967.1| - 0.017 14.9 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain FaeA PF04703.12 gi|330835239|ref|YP_004409967.1| - 0.022 15.2 0.1 0.029 14.7 0.1 1.2 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.6 gi|330835239|ref|YP_004409967.1| - 0.027 14.5 0.0 0.23 11.5 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Rrf2 PF02082.20 gi|330835239|ref|YP_004409967.1| - 0.034 14.5 0.0 0.043 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator TBPIP PF07106.13 gi|330835239|ref|YP_004409967.1| - 0.035 14.0 0.2 0.093 12.7 0.2 1.7 1 1 0 1 1 1 0 TBPIP/Hop2 winged helix domain HTH_30 PF13556.6 gi|330835239|ref|YP_004409967.1| - 0.043 13.6 0.4 0.095 12.5 0.4 1.8 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 gi|330835239|ref|YP_004409967.1| - 0.06 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain TFIIE_alpha PF02002.17 gi|330835239|ref|YP_004409967.1| - 0.065 13.1 0.0 0.076 12.9 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit LexA_DNA_bind PF01726.16 gi|330835239|ref|YP_004409967.1| - 0.076 12.8 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain DprA_WH PF17782.1 gi|330835239|ref|YP_004409967.1| - 0.16 12.1 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 DprA winged helix domain NAD_synthase PF02540.17 gi|330835240|ref|YP_004409968.1| - 2.3e-73 246.3 0.0 2.5e-73 246.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|330835240|ref|YP_004409968.1| - 4.7e-05 22.3 0.0 0.0048 15.7 0.0 2.1 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|330835240|ref|YP_004409968.1| - 0.0037 17.0 0.0 0.0043 16.8 0.0 1.1 1 0 0 1 1 1 1 Asparagine synthase HTH_23 PF13384.6 gi|330835240|ref|YP_004409968.1| - 0.025 14.4 0.0 0.13 12.1 0.0 2.2 3 0 0 3 3 3 0 Homeodomain-like domain QueC PF06508.13 gi|330835240|ref|YP_004409968.1| - 0.11 12.0 0.0 0.21 11.1 0.0 1.6 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.19 gi|330835240|ref|YP_004409968.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoadenosine phosphosulfate reductase family PadR PF03551.14 gi|330835241|ref|YP_004409969.1| - 1.8e-06 27.8 0.6 2.1e-06 27.6 0.1 1.4 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|330835241|ref|YP_004409969.1| - 0.0029 17.4 0.0 0.0033 17.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_45 PF14947.6 gi|330835241|ref|YP_004409969.1| - 0.016 15.2 0.4 0.14 12.2 0.0 2.0 1 1 1 2 2 2 0 Winged helix-turn-helix Exc PF07825.11 gi|330835241|ref|YP_004409969.1| - 0.026 14.5 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Excisionase-like protein DUF2250 PF10007.9 gi|330835241|ref|YP_004409969.1| - 0.05 13.7 0.2 0.081 13.0 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.12 gi|330835241|ref|YP_004409969.1| - 0.074 13.3 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein S10_plectin PF03501.15 gi|330835241|ref|YP_004409969.1| - 0.077 13.1 0.1 0.098 12.7 0.1 1.3 1 1 0 1 1 1 0 Plectin/S10 domain VWA PF00092.28 gi|330835244|ref|YP_004409972.1| - 8e-07 29.5 3.1 8.5e-07 29.4 0.0 2.3 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|330835244|ref|YP_004409972.1| - 1e-05 25.1 0.0 2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|330835244|ref|YP_004409972.1| - 1.6e-05 24.9 0.0 4.1e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|330835244|ref|YP_004409972.1| - 0.00011 22.8 0.3 0.0012 19.5 0.0 2.7 2 1 1 3 3 3 1 von Willebrand factor type A domain DUF3376 PF11856.8 gi|330835244|ref|YP_004409972.1| - 0.02 13.9 0.3 0.029 13.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3376) Miga PF10265.9 gi|330835244|ref|YP_004409972.1| - 0.025 13.6 3.9 0.034 13.1 3.9 1.1 1 0 0 1 1 1 0 Mitoguardin COMM_domain PF07258.14 gi|330835244|ref|YP_004409972.1| - 0.044 13.9 0.5 0.097 12.8 0.5 1.6 1 0 0 1 1 1 0 COMM domain SpoVAE PF14097.6 gi|330835244|ref|YP_004409972.1| - 0.1 12.2 4.0 6.2 6.4 0.1 3.0 3 1 1 4 4 4 0 Stage V sporulation protein AE1 DUF5327 PF17261.2 gi|330835244|ref|YP_004409972.1| - 0.12 13.1 5.2 0.26 12.1 5.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5327) DUF29 PF01724.16 gi|330835244|ref|YP_004409972.1| - 0.85 9.8 3.9 1.5 9.1 3.2 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF29 MutS_II PF05188.17 gi|330835244|ref|YP_004409972.1| - 2.1 8.6 5.1 0.47 10.7 1.6 1.7 2 0 0 2 2 2 0 MutS domain II AAA_5 PF07728.14 gi|330835245|ref|YP_004409973.1| - 1.4e-26 93.2 0.0 3.8e-26 91.7 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|330835245|ref|YP_004409973.1| - 3.7e-07 29.9 0.1 1e-06 28.5 0.1 1.8 1 0 0 1 1 1 1 AAA lid domain AAA_16 PF13191.6 gi|330835245|ref|YP_004409973.1| - 9.8e-05 22.8 0.1 0.00025 21.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|330835245|ref|YP_004409973.1| - 0.0003 21.1 0.2 0.0021 18.3 0.0 2.4 2 2 0 2 2 2 1 AAA domain AAA PF00004.29 gi|330835245|ref|YP_004409973.1| - 0.00034 21.1 0.1 0.0022 18.4 0.0 2.3 2 1 2 4 4 4 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|330835245|ref|YP_004409973.1| - 0.00041 20.2 0.0 0.00067 19.5 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|330835245|ref|YP_004409973.1| - 0.00045 19.7 0.1 0.003 17.0 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|330835245|ref|YP_004409973.1| - 0.018 14.1 0.0 0.04 13.0 0.0 1.5 1 0 0 1 1 1 0 MCM P-loop domain Sigma54_activat PF00158.26 gi|330835245|ref|YP_004409973.1| - 0.032 13.9 0.0 0.12 12.1 0.0 1.9 1 1 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|330835245|ref|YP_004409973.1| - 0.064 13.0 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|330835245|ref|YP_004409973.1| - 0.16 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region REPA_OB_2 PF16900.5 gi|330835246|ref|YP_004409974.1| - 1.2e-05 25.1 0.7 1.5e-05 24.8 0.7 1.1 1 0 0 1 1 1 1 Replication protein A OB domain tRNA_anti-codon PF01336.25 gi|330835246|ref|YP_004409974.1| - 1.3e-05 25.0 0.9 1.9e-05 24.5 0.9 1.3 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain CDC24_OB3 PF17244.2 gi|330835246|ref|YP_004409974.1| - 0.0054 16.5 0.1 0.0062 16.3 0.1 1.1 1 0 0 1 1 1 1 Cell division control protein 24, OB domain 3 POT1 PF02765.17 gi|330835246|ref|YP_004409974.1| - 0.049 13.5 0.0 0.064 13.1 0.0 1.2 1 0 0 1 1 1 0 Telomeric single stranded DNA binding POT1/CDC13 PqqD PF05402.12 gi|330835247|ref|YP_004409975.1| - 4.2e-12 46.2 0.5 5.4e-12 45.8 0.5 1.2 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) DUF4574 PF15141.6 gi|330835247|ref|YP_004409975.1| - 0.084 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex assembly factor 3 MoeA_N PF03453.17 gi|330835248|ref|YP_004409976.1| - 3.8e-34 117.7 0.0 7.6e-34 116.7 0.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|330835248|ref|YP_004409976.1| - 6.6e-28 97.2 0.1 1.1e-27 96.4 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|330835248|ref|YP_004409976.1| - 9.5e-09 35.3 0.0 3e-08 33.7 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) GHMP_kinases_N PF00288.26 gi|330835249|ref|YP_004409977.1| - 3e-16 59.4 2.1 6.2e-16 58.4 2.1 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|330835249|ref|YP_004409977.1| - 7.2e-08 32.7 0.0 2.5e-07 31.0 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.20 gi|330835250|ref|YP_004409978.1| - 1.1e-124 415.8 0.0 1.3e-124 415.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|330835250|ref|YP_004409978.1| - 9e-05 21.8 0.0 0.00024 20.4 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|330835250|ref|YP_004409978.1| - 0.00037 19.6 0.0 0.0011 18.0 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|330835250|ref|YP_004409978.1| - 0.0019 16.8 0.0 0.8 8.2 0.0 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase Beta_elim_lyase PF01212.21 gi|330835250|ref|YP_004409978.1| - 0.15 11.3 0.0 1.3 8.2 0.0 2.3 1 1 0 1 1 1 0 Beta-eliminating lyase CCG PF02754.16 gi|330835252|ref|YP_004409980.1| - 1.9e-33 114.5 0.8 1e-16 60.9 0.2 2.3 2 0 0 2 2 2 2 Cysteine-rich domain Cellulase PF00150.18 gi|330835252|ref|YP_004409980.1| - 0.07 12.5 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) CxC4 PF18717.1 gi|330835252|ref|YP_004409980.1| - 0.077 12.8 0.1 0.62 9.9 0.0 2.0 2 0 0 2 2 2 0 CxC4 like cysteine cluster associated with KDZ transposases Fer2_3 PF13085.6 gi|330835253|ref|YP_004409981.1| - 8.5e-30 103.0 0.3 1.8e-29 101.9 0.3 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|330835253|ref|YP_004409981.1| - 1.7e-10 41.2 2.3 1.7e-10 41.2 2.3 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835253|ref|YP_004409981.1| - 1.6e-08 35.0 3.5 1.6e-08 35.0 3.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835253|ref|YP_004409981.1| - 1e-07 32.0 10.2 7.2e-07 29.3 7.1 3.0 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835253|ref|YP_004409981.1| - 1.6e-05 25.8 5.0 1.6e-05 25.8 5.0 3.0 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|330835253|ref|YP_004409981.1| - 2e-05 24.8 1.9 0.032 14.4 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835253|ref|YP_004409981.1| - 2.1e-05 24.6 19.0 0.00013 22.0 10.0 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835253|ref|YP_004409981.1| - 0.001 19.0 15.3 0.0059 16.6 1.1 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330835253|ref|YP_004409981.1| - 0.001 19.6 13.1 0.011 16.2 10.1 3.1 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330835253|ref|YP_004409981.1| - 0.0017 18.5 9.3 0.07 13.3 0.2 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835253|ref|YP_004409981.1| - 0.0019 18.0 19.3 0.0075 16.0 2.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|330835253|ref|YP_004409981.1| - 0.0063 17.2 3.6 1.5 9.6 0.1 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer2 PF00111.27 gi|330835253|ref|YP_004409981.1| - 0.02 14.9 0.4 0.02 14.9 0.4 2.2 2 1 1 3 3 3 0 2Fe-2S iron-sulfur cluster binding domain Peptidase_C3 PF00548.20 gi|330835253|ref|YP_004409981.1| - 0.026 14.5 0.7 1.4 8.8 0.3 2.2 2 0 0 2 2 2 0 3C cysteine protease (picornain 3C) Fer4_4 PF12800.7 gi|330835253|ref|YP_004409981.1| - 0.061 13.9 15.5 0.11 13.0 0.6 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330835253|ref|YP_004409981.1| - 2.1 8.9 11.5 3.4 8.3 3.0 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|330835253|ref|YP_004409981.1| - 3.8 8.4 10.2 2.2 9.2 0.1 3.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain zf-C2H2_11 PF16622.5 gi|330835253|ref|YP_004409981.1| - 8.2 6.3 10.7 3.1 7.6 1.9 2.5 2 0 0 2 2 2 0 zinc-finger C2H2-type Fer4_3 PF12798.7 gi|330835253|ref|YP_004409981.1| - 8.6 7.6 26.7 0.13 13.2 3.9 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|330835254|ref|YP_004409982.1| - 1.2e-110 370.5 0.7 1.5e-110 370.2 0.7 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|330835254|ref|YP_004409982.1| - 4.9e-45 152.6 0.2 1.4e-44 151.1 0.2 1.7 2 0 0 2 2 2 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|330835254|ref|YP_004409982.1| - 1e-07 31.9 1.8 1.7e-06 27.9 1.7 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|330835254|ref|YP_004409982.1| - 8.1e-06 25.3 0.0 0.00041 19.7 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330835254|ref|YP_004409982.1| - 2.6e-05 23.1 0.2 0.00063 18.6 0.2 2.2 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|330835254|ref|YP_004409982.1| - 0.00051 19.2 1.7 0.0073 15.4 1.1 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|330835254|ref|YP_004409982.1| - 0.00067 19.0 0.2 0.0011 18.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|330835254|ref|YP_004409982.1| - 0.0062 15.6 0.1 0.011 14.9 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Thi4 PF01946.17 gi|330835254|ref|YP_004409982.1| - 0.0096 15.2 0.5 0.35 10.1 0.2 3.0 3 0 0 3 3 3 1 Thi4 family FAD_oxidored PF12831.7 gi|330835254|ref|YP_004409982.1| - 0.015 14.7 1.8 0.038 13.3 1.8 1.7 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330835254|ref|YP_004409982.1| - 0.015 15.5 0.2 0.059 13.6 0.2 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|330835254|ref|YP_004409982.1| - 0.16 12.6 1.8 0.95 10.1 1.8 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase_6 PF13344.6 gi|330835255|ref|YP_004409983.1| - 8.6e-22 77.2 0.0 3.1e-21 75.4 0.0 1.9 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|330835255|ref|YP_004409983.1| - 1.2e-17 63.7 0.0 2.3e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|330835255|ref|YP_004409983.1| - 3.2e-08 34.1 0.0 4.6e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|330835255|ref|YP_004409983.1| - 0.00054 20.1 0.4 0.0016 18.5 0.0 2.0 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|330835255|ref|YP_004409983.1| - 0.00099 18.8 0.4 0.0031 17.1 0.2 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Capsule_synth PF05159.14 gi|330835255|ref|YP_004409983.1| - 0.019 14.4 0.0 0.033 13.6 0.0 1.3 1 0 0 1 1 1 0 Capsule polysaccharide biosynthesis protein DUF2070 PF09843.9 gi|330835257|ref|YP_004409985.1| - 8.1e-92 308.3 0.0 9.7e-92 308.1 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DAO PF01266.24 gi|330835258|ref|YP_004409986.1| - 4.4e-13 49.5 0.1 2.6e-06 27.3 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330835258|ref|YP_004409986.1| - 2.3e-09 36.8 0.2 2.4e-05 23.6 0.1 2.2 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|330835258|ref|YP_004409986.1| - 8.4e-09 35.1 0.0 1.5e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|330835258|ref|YP_004409986.1| - 5.5e-08 32.6 0.1 3.9e-07 29.8 0.1 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|330835258|ref|YP_004409986.1| - 6e-08 32.2 0.0 6.4e-07 28.8 0.0 2.1 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|330835258|ref|YP_004409986.1| - 2.3e-07 30.3 0.0 3.6e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330835258|ref|YP_004409986.1| - 1.5e-06 28.3 0.0 5.1e-06 26.6 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|330835258|ref|YP_004409986.1| - 1e-05 24.6 0.0 0.0045 15.9 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Thi4 PF01946.17 gi|330835258|ref|YP_004409986.1| - 0.00016 21.0 0.0 0.0012 18.2 0.0 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|330835258|ref|YP_004409986.1| - 0.00017 22.1 0.0 0.0028 18.2 0.0 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330835258|ref|YP_004409986.1| - 0.0012 17.6 0.0 0.003 16.3 0.0 1.6 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|330835258|ref|YP_004409986.1| - 0.0054 15.8 0.1 0.0088 15.1 0.1 1.5 1 1 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|330835258|ref|YP_004409986.1| - 0.027 13.7 0.1 0.81 8.9 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330835258|ref|YP_004409986.1| - 0.082 12.2 0.0 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1834 PF08873.11 gi|330835259|ref|YP_004409987.1| - 0.12 12.1 0.0 0.13 12.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1834) Metallophos_2 PF12850.7 gi|330835261|ref|YP_004409989.1| - 5.6e-06 26.6 0.0 7e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RACo_C_ter PF14574.6 gi|330835261|ref|YP_004409989.1| - 0.048 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 C-terminal domain of RACo the ASKHA domain CCB1 PF12046.8 gi|330835261|ref|YP_004409989.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Asparaginase_2 PF01112.18 gi|330835262|ref|YP_004409990.1| - 6.7e-70 235.5 3.7 1.2e-42 146.0 0.3 2.0 1 1 1 2 2 2 2 Asparaginase PPL4 PF18188.1 gi|330835262|ref|YP_004409990.1| - 0.067 13.1 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Prim-pol 4 DUF1275 PF06912.11 gi|330835263|ref|YP_004409991.1| - 0.64 9.9 9.6 0.094 12.6 2.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1275) Pyr_redox_2 PF07992.14 gi|330835264|ref|YP_004409992.1| - 9.2e-10 38.2 0.0 1.6e-09 37.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|330835264|ref|YP_004409992.1| - 2.2e-07 30.8 0.0 0.0011 18.6 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330835264|ref|YP_004409992.1| - 5.7e-06 26.5 0.1 1.7e-05 24.9 0.1 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|330835264|ref|YP_004409992.1| - 6.1e-05 22.4 0.1 0.082 12.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330835264|ref|YP_004409992.1| - 0.00025 19.9 0.0 0.0026 16.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|330835264|ref|YP_004409992.1| - 0.0041 17.1 0.1 2.4 8.2 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|330835264|ref|YP_004409992.1| - 0.0079 16.7 0.0 0.034 14.7 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330835264|ref|YP_004409992.1| - 0.014 14.5 0.0 0.1 11.6 0.0 2.0 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|330835264|ref|YP_004409992.1| - 0.081 12.2 0.0 2.9 7.1 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase FAD_binding_3 PF01494.19 gi|330835264|ref|YP_004409992.1| - 0.084 12.1 0.0 0.12 11.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|330835264|ref|YP_004409992.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein HTH_AsnC-type PF13404.6 gi|330835265|ref|YP_004409993.1| - 1.3e-16 60.1 0.2 2.8e-16 59.1 0.2 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|330835265|ref|YP_004409993.1| - 2.7e-16 58.8 0.7 7.5e-16 57.4 0.1 2.1 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|330835265|ref|YP_004409993.1| - 4.4e-16 58.6 0.2 6.3e-16 58.1 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_11 PF08279.12 gi|330835265|ref|YP_004409993.1| - 3.4e-05 23.7 0.1 0.00012 22.0 0.1 1.9 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|330835265|ref|YP_004409993.1| - 0.00064 19.6 0.0 0.002 18.0 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|330835265|ref|YP_004409993.1| - 0.00068 19.4 0.0 0.0024 17.6 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|330835265|ref|YP_004409993.1| - 0.0011 18.8 0.3 0.0027 17.6 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|330835265|ref|YP_004409993.1| - 0.0015 18.9 0.2 0.013 16.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|330835265|ref|YP_004409993.1| - 0.0016 18.5 0.0 0.0058 16.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|330835265|ref|YP_004409993.1| - 0.003 17.4 0.1 0.012 15.6 0.1 1.9 2 0 0 2 2 2 1 MarR family Mga PF05043.13 gi|330835265|ref|YP_004409993.1| - 0.0069 16.9 0.1 0.014 16.0 0.1 1.6 1 1 0 1 1 1 1 Mga helix-turn-helix domain AsnC_trans_reg2 PF17805.1 gi|330835265|ref|YP_004409993.1| - 0.02 15.0 0.0 0.032 14.4 0.0 1.3 1 0 0 1 1 1 0 AsnC-like ligand binding domain Sigma70_r4 PF04545.16 gi|330835265|ref|YP_004409993.1| - 0.027 14.0 0.1 0.19 11.3 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_Mga PF08280.11 gi|330835265|ref|YP_004409993.1| - 0.027 14.5 0.0 0.054 13.5 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|330835265|ref|YP_004409993.1| - 0.041 13.8 0.1 0.16 11.9 0.1 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|330835265|ref|YP_004409993.1| - 0.043 13.7 1.2 0.35 10.8 0.1 2.6 1 1 2 3 3 3 0 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|330835265|ref|YP_004409993.1| - 0.055 12.9 0.1 0.12 11.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Phage_rep_O PF04492.13 gi|330835265|ref|YP_004409993.1| - 0.057 14.0 0.1 0.17 12.5 0.0 1.8 1 1 1 2 2 2 0 Bacteriophage replication protein O PCI PF01399.27 gi|330835265|ref|YP_004409993.1| - 0.061 13.8 0.3 0.2 12.2 0.1 1.9 2 1 0 2 2 2 0 PCI domain RuvB_C PF05491.13 gi|330835265|ref|YP_004409993.1| - 0.066 13.1 0.1 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain NapD PF03927.13 gi|330835265|ref|YP_004409993.1| - 0.075 13.1 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 NapD protein ACT_4 PF13291.6 gi|330835265|ref|YP_004409993.1| - 0.081 13.5 0.1 0.55 10.9 0.0 2.1 1 1 1 2 2 2 0 ACT domain PNP_UDP_1 PF01048.20 gi|330835266|ref|YP_004409994.1| - 1.9e-46 158.2 0.0 2.2e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily polyprenyl_synt PF00348.17 gi|330835268|ref|YP_004409996.1| - 6.2e-38 130.3 0.1 8.2e-38 129.9 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF5483 PF17581.2 gi|330835268|ref|YP_004409996.1| - 0.03 13.2 0.2 0.041 12.8 0.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5483) RimK PF08443.11 gi|330835269|ref|YP_004409997.1| - 1.4e-28 99.8 0.0 2e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|330835269|ref|YP_004409997.1| - 9.7e-11 41.4 0.0 1.5e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|330835269|ref|YP_004409997.1| - 7.4e-09 35.9 0.0 1.5e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|330835269|ref|YP_004409997.1| - 7.8e-05 22.0 0.0 0.005 16.1 0.0 2.5 1 1 0 2 2 2 1 YheC/D like ATP-grasp ATPgrasp_ST PF14397.6 gi|330835269|ref|YP_004409997.1| - 0.00022 20.6 0.0 0.23 10.7 0.0 2.5 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp Rimk_N PF18030.1 gi|330835269|ref|YP_004409997.1| - 0.00085 19.7 0.1 0.0017 18.7 0.1 1.5 1 0 0 1 1 1 1 RimK PreATP-grasp domain Ins134_P3_kin PF05770.11 gi|330835269|ref|YP_004409997.1| - 0.02 14.4 0.0 0.29 10.6 0.0 2.2 1 1 0 1 1 1 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain TP_methylase PF00590.20 gi|330835270|ref|YP_004409998.1| - 1.6e-26 93.5 0.0 2e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|330835271|ref|YP_004409999.1| - 8.4e-39 133.7 0.0 9.7e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|330835271|ref|YP_004409999.1| - 0.002 18.5 0.0 0.0036 17.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Band_7 PF01145.25 gi|330835272|ref|YP_004410000.1| - 3.4e-37 128.2 2.5 5e-37 127.6 2.5 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|330835272|ref|YP_004410000.1| - 0.0022 17.7 0.2 0.0073 16.0 0.2 1.9 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF4315 PF14193.6 gi|330835272|ref|YP_004410000.1| - 0.023 14.7 1.0 0.049 13.6 1.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) Cytochrom_C1 PF02167.15 gi|330835272|ref|YP_004410000.1| - 0.029 14.1 0.0 0.042 13.6 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C1 family RBFA PF02033.18 gi|330835272|ref|YP_004410000.1| - 0.086 13.3 1.1 0.35 11.3 0.1 2.3 1 1 1 2 2 2 0 Ribosome-binding factor A Thermopsin PF05317.11 gi|330835273|ref|YP_004410001.1| - 3e-25 89.2 2.1 8.7e-25 87.7 2.1 1.8 1 1 0 1 1 1 1 Thermopsin DUF1861 PF08950.10 gi|330835273|ref|YP_004410001.1| - 0.021 14.1 0.1 0.038 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) FeoB_N PF02421.18 gi|330835273|ref|YP_004410001.1| - 0.021 14.3 0.0 3.6 7.1 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B NfeD PF01957.18 gi|330835274|ref|YP_004410002.1| - 1.1e-13 51.4 1.2 1.9e-13 50.6 1.2 1.5 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF4752 PF15944.5 gi|330835274|ref|YP_004410002.1| - 0.057 13.5 2.0 0.059 13.4 0.0 1.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4752) MMPL PF03176.15 gi|330835274|ref|YP_004410002.1| - 0.072 12.0 3.4 0.085 11.8 3.4 1.1 1 0 0 1 1 1 0 MMPL family RseC_MucC PF04246.12 gi|330835274|ref|YP_004410002.1| - 1.9 8.5 3.7 3.3 7.7 3.0 1.7 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC GGACT PF06094.12 gi|330835276|ref|YP_004410004.1| - 7.1e-30 104.1 9.8 7.6e-21 75.0 3.5 2.0 2 0 0 2 2 2 2 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|330835276|ref|YP_004410004.1| - 1.1e-12 48.2 2.4 5.4e-08 33.1 0.1 2.2 2 0 0 2 2 2 2 AIG2-like family ChaC PF04752.12 gi|330835276|ref|YP_004410004.1| - 0.00046 20.3 3.6 0.095 12.7 0.5 2.3 2 0 0 2 2 2 2 ChaC-like protein Pterin_4a PF01329.19 gi|330835277|ref|YP_004410005.1| - 6.6e-27 93.5 0.0 7.2e-27 93.4 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase DUF5508 PF17621.2 gi|330835277|ref|YP_004410005.1| - 0.0087 15.3 0.1 0.0088 15.2 0.1 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5508) Cdc6_C PF09079.11 gi|330835278|ref|YP_004410006.1| - 2e-12 46.9 0.1 4.7e-12 45.7 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|330835278|ref|YP_004410006.1| - 2.9e-08 34.2 0.0 7.2e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|330835278|ref|YP_004410006.1| - 7.5e-08 32.7 0.0 1.4e-07 31.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|330835278|ref|YP_004410006.1| - 2.3e-05 23.7 0.0 5.1e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain AAA_7 PF12775.7 gi|330835278|ref|YP_004410006.1| - 0.014 14.9 0.1 0.13 11.8 0.1 2.1 1 1 0 1 1 1 0 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|330835278|ref|YP_004410006.1| - 0.044 13.5 0.0 0.28 10.9 0.0 2.2 3 0 0 3 3 3 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|330835278|ref|YP_004410006.1| - 0.046 13.8 0.0 0.13 12.4 0.0 1.7 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_assoc_2 PF16193.5 gi|330835278|ref|YP_004410006.1| - 0.093 13.1 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_16 PF13191.6 gi|330835278|ref|YP_004410006.1| - 0.15 12.4 0.0 0.54 10.6 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain Seryl_tRNA_N PF02403.22 gi|330835279|ref|YP_004410007.1| - 0.0024 18.1 5.4 0.31 11.3 2.4 2.1 2 0 0 2 2 2 2 Seryl-tRNA synthetase N-terminal domain CCDC53 PF10152.9 gi|330835279|ref|YP_004410007.1| - 0.012 16.0 0.8 0.015 15.8 0.8 1.3 1 1 0 1 1 1 0 Subunit CCDC53 of WASH complex Ntox28 PF15605.6 gi|330835279|ref|YP_004410007.1| - 0.016 15.4 3.7 0.021 15.0 0.1 2.0 1 1 1 2 2 2 0 Bacterial toxin 28 Spectrin PF00435.21 gi|330835279|ref|YP_004410007.1| - 0.035 14.6 4.0 2 9.0 0.1 2.1 1 1 1 2 2 2 0 Spectrin repeat Snapin_Pallidin PF14712.6 gi|330835279|ref|YP_004410007.1| - 0.052 14.0 4.7 4.5 7.8 1.9 2.1 2 0 0 2 2 2 0 Snapin/Pallidin Fzo_mitofusin PF04799.13 gi|330835279|ref|YP_004410007.1| - 0.086 12.4 5.3 0.85 9.2 1.6 2.0 1 1 1 2 2 2 0 fzo-like conserved region CREPT PF16566.5 gi|330835279|ref|YP_004410007.1| - 0.09 13.0 3.6 0.61 10.3 0.1 2.0 2 0 0 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour SWI-SNF_Ssr4 PF08549.10 gi|330835279|ref|YP_004410007.1| - 0.13 10.8 1.8 0.2 10.2 1.8 1.2 1 0 0 1 1 1 0 Fungal domain of unknown function (DUF1750) YkyA PF10368.9 gi|330835279|ref|YP_004410007.1| - 0.14 11.8 9.5 0.26 10.9 0.5 2.0 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein FlaC_arch PF05377.11 gi|330835279|ref|YP_004410007.1| - 0.2 12.1 9.0 5.3 7.5 0.5 3.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) DUF4140 PF13600.6 gi|330835279|ref|YP_004410007.1| - 1 9.9 5.3 6.1 7.4 0.4 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) EMP24_GP25L PF01105.24 gi|330835279|ref|YP_004410007.1| - 2.6 7.9 5.9 24 4.8 5.9 2.0 1 1 0 1 1 1 0 emp24/gp25L/p24 family/GOLD Iso_dh PF00180.20 gi|330835280|ref|YP_004410008.1| - 2.6e-107 359.0 0.1 3.1e-107 358.7 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase P22_Tail-4 PF11650.8 gi|330835280|ref|YP_004410008.1| - 0.12 12.3 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 P22 tail accessory factor Methyltransf_25 PF13649.6 gi|330835281|ref|YP_004410009.1| - 1.7e-15 57.5 0.0 2.2e-15 57.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|330835281|ref|YP_004410009.1| - 6e-14 52.5 0.0 7.8e-14 52.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330835281|ref|YP_004410009.1| - 1.2e-07 31.7 0.0 1.5e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330835281|ref|YP_004410009.1| - 5.8e-07 29.1 0.0 7.2e-07 28.8 0.0 1.0 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|330835281|ref|YP_004410009.1| - 1.4e-06 28.1 0.0 1.7e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|330835281|ref|YP_004410009.1| - 3.2e-06 26.8 0.0 5.1e-06 26.1 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|330835281|ref|YP_004410009.1| - 2.5e-05 24.9 0.0 3.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|330835281|ref|YP_004410009.1| - 0.00019 21.0 0.0 0.00024 20.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|330835281|ref|YP_004410009.1| - 0.0011 17.7 0.0 0.0014 17.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.7 gi|330835281|ref|YP_004410009.1| - 0.01 15.8 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|330835281|ref|YP_004410009.1| - 0.035 13.4 0.0 0.047 13.0 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_2 PF00891.18 gi|330835281|ref|YP_004410009.1| - 0.16 11.3 0.0 0.18 11.0 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Pro-kuma_activ PF09286.11 gi|330835282|ref|YP_004410010.1| - 1.4e-08 35.1 0.7 5.5e-08 33.2 0.2 2.3 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|330835282|ref|YP_004410010.1| - 0.00018 20.9 0.1 0.00034 20.0 0.1 1.4 1 0 0 1 1 1 1 Subtilase family Prominin PF05478.11 gi|330835284|ref|YP_004410012.1| - 0.063 11.2 9.6 0.013 13.5 3.7 2.0 2 0 0 2 2 2 0 Prominin Phasin PF05597.11 gi|330835284|ref|YP_004410012.1| - 0.27 11.2 10.9 0.15 12.1 3.4 3.1 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Baculo_F PF12259.8 gi|330835284|ref|YP_004410012.1| - 3.5 6.0 7.5 5 5.5 7.5 1.1 1 0 0 1 1 1 0 Baculovirus F protein TerB PF05099.13 gi|330835285|ref|YP_004410013.1| - 0.13 12.2 0.0 0.22 11.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TerB Semialdhyde_dh PF01118.24 gi|330835286|ref|YP_004410014.1| - 3.5e-30 104.9 0.0 9.1e-30 103.6 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|330835286|ref|YP_004410014.1| - 6.6e-21 75.2 0.0 9.3e-21 74.7 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DUF1240 PF06836.12 gi|330835287|ref|YP_004410015.1| - 7 7.3 8.1 17 6.0 1.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) ILVD_EDD PF00920.21 gi|330835288|ref|YP_004410016.1| - 1.2e-209 697.3 0.1 1.3e-209 697.1 0.1 1.0 1 0 0 1 1 1 1 Dehydratase family PMSR PF01625.21 gi|330835289|ref|YP_004410017.1| - 1.3e-53 181.3 0.3 1.5e-53 181.0 0.3 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase PPR_3 PF13812.6 gi|330835289|ref|YP_004410017.1| - 0.061 13.4 0.1 4.6 7.4 0.0 2.2 2 0 0 2 2 2 0 Pentatricopeptide repeat domain TGS PF02824.21 gi|330835290|ref|YP_004410018.1| - 2e-18 66.2 0.0 3.4e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|330835290|ref|YP_004410018.1| - 9.4e-06 25.6 0.0 2e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain DUF2686 PF10887.8 gi|330835290|ref|YP_004410018.1| - 0.067 12.1 0.0 0.094 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2686) YchF-GTPase_C PF06071.13 gi|330835290|ref|YP_004410018.1| - 0.084 13.1 0.1 4 7.7 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) RNase_HII PF01351.18 gi|330835291|ref|YP_004410019.1| - 3.3e-45 154.4 0.1 3.8e-45 154.2 0.1 1.0 1 0 0 1 1 1 1 Ribonuclease HII NMD3 PF04981.13 gi|330835292|ref|YP_004410020.1| - 1.6e-41 142.4 6.4 1.8e-41 142.2 6.4 1.0 1 0 0 1 1 1 1 NMD3 family DZR PF12773.7 gi|330835292|ref|YP_004410020.1| - 0.3 11.1 4.4 5.2 7.2 0.7 2.9 2 1 0 3 3 3 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|330835292|ref|YP_004410020.1| - 0.52 10.5 6.0 21 5.3 2.3 3.0 2 1 0 2 2 2 0 Zinc ribbon domain DUF424 PF04242.13 gi|330835293|ref|YP_004410021.1| - 7.7e-24 83.8 1.2 8.6e-24 83.6 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) PIH1 PF08190.12 gi|330835293|ref|YP_004410021.1| - 0.16 11.4 0.0 0.22 11.0 0.0 1.2 1 0 0 1 1 1 0 PIH1 N-terminal domain eIF-5_eIF-2B PF01873.17 gi|330835294|ref|YP_004410022.1| - 1.3e-31 108.9 0.5 1.5e-31 108.7 0.5 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 SUI1 PF01253.22 gi|330835294|ref|YP_004410022.1| - 0.089 13.3 0.0 0.17 12.5 0.0 1.5 1 0 0 1 1 1 0 Translation initiation factor SUI1 Radical_SAM PF04055.21 gi|330835295|ref|YP_004410023.1| - 8.2e-27 94.6 0.3 1e-25 91.1 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|330835295|ref|YP_004410023.1| - 1.6e-20 73.0 0.1 2.6e-20 72.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|330835295|ref|YP_004410023.1| - 2.5e-07 30.6 0.0 5.3e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|330835295|ref|YP_004410023.1| - 0.0058 16.8 0.2 0.042 14.0 0.2 2.3 1 1 0 1 1 1 1 TRAM domain Thiolase_N PF00108.23 gi|330835296|ref|YP_004410024.1| - 1.2e-86 290.3 0.2 1.5e-86 290.0 0.2 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|330835296|ref|YP_004410024.1| - 4.5e-37 126.4 0.2 1.2e-36 125.1 0.0 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|330835296|ref|YP_004410024.1| - 1.5e-05 24.7 2.8 9.2e-05 22.1 1.5 2.4 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain IF3_N PF05198.16 gi|330835296|ref|YP_004410024.1| - 0.089 13.1 0.0 16 5.8 0.0 2.9 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain ACP_syn_III PF08545.10 gi|330835296|ref|YP_004410024.1| - 0.4 10.6 1.9 12 5.8 0.6 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KH_1 PF00013.29 gi|330835297|ref|YP_004410025.1| - 1.5e-06 27.9 1.4 3e-06 27.0 1.4 1.4 1 0 0 1 1 1 1 KH domain CAAD PF14159.6 gi|330835297|ref|YP_004410025.1| - 0.04 13.7 0.0 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase RIO1 PF01163.22 gi|330835298|ref|YP_004410026.1| - 4.1e-52 176.5 0.1 4.8e-52 176.3 0.1 1.0 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|330835298|ref|YP_004410026.1| - 6.2e-05 23.0 0.0 0.00021 21.3 0.0 1.7 1 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|330835298|ref|YP_004410026.1| - 0.00025 20.5 0.4 0.0009 18.7 0.4 1.7 1 1 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|330835298|ref|YP_004410026.1| - 0.0032 16.3 0.0 0.0032 16.3 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase Kdo PF06293.14 gi|330835298|ref|YP_004410026.1| - 0.052 12.9 0.1 1.8 7.9 0.1 2.1 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Kinase-PolyVal PF18762.1 gi|330835298|ref|YP_004410026.1| - 0.06 13.3 0.9 10 6.0 0.1 2.4 2 0 0 2 2 2 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins DUF4479 PF14794.6 gi|330835298|ref|YP_004410026.1| - 0.11 12.3 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4479) Pkinase_Tyr PF07714.17 gi|330835298|ref|YP_004410026.1| - 0.13 11.5 0.1 0.26 10.5 0.1 1.6 1 1 0 1 1 1 0 Protein tyrosine kinase eIF-1a PF01176.19 gi|330835299|ref|YP_004410027.1| - 2.1e-24 85.1 0.2 2.7e-24 84.7 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF3883 PF13020.6 gi|330835300|ref|YP_004410028.1| - 0.0013 18.7 0.1 0.0023 17.9 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3883) ECH_1 PF00378.20 gi|330835301|ref|YP_004410029.1| - 9.9e-25 87.3 0.0 1.2e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|330835301|ref|YP_004410029.1| - 8.1e-17 61.7 0.0 9.7e-17 61.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ABC2_membrane PF01061.24 gi|330835302|ref|YP_004410030.1| - 1.3e-13 50.9 13.7 1.3e-13 50.9 13.7 2.7 2 1 1 3 3 3 2 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330835302|ref|YP_004410030.1| - 9.3e-13 48.0 29.1 1.3e-12 47.5 29.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|330835303|ref|YP_004410031.1| - 1.6e-30 106.4 0.0 2.3e-30 105.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835303|ref|YP_004410031.1| - 9.2e-13 48.7 0.0 7.5e-08 32.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|330835303|ref|YP_004410031.1| - 0.00065 19.5 0.0 0.25 11.0 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|330835303|ref|YP_004410031.1| - 0.0034 16.9 0.0 0.19 11.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|330835303|ref|YP_004410031.1| - 0.0089 16.5 1.5 0.011 16.2 1.4 1.6 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|330835303|ref|YP_004410031.1| - 0.012 15.8 0.0 0.091 13.0 0.0 2.4 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|330835303|ref|YP_004410031.1| - 0.021 15.3 0.2 0.15 12.5 0.2 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|330835303|ref|YP_004410031.1| - 0.032 14.0 0.1 0.067 13.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|330835303|ref|YP_004410031.1| - 0.035 13.8 0.0 0.095 12.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|330835303|ref|YP_004410031.1| - 0.036 14.0 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain LepB_GAP_N PF18172.1 gi|330835303|ref|YP_004410031.1| - 0.036 14.0 0.0 0.08 12.8 0.0 1.5 2 0 0 2 2 2 0 LepB GAP domain N-terminal subdomain AAA_16 PF13191.6 gi|330835303|ref|YP_004410031.1| - 0.042 14.2 0.0 0.061 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.22 gi|330835303|ref|YP_004410031.1| - 0.065 12.9 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|330835303|ref|YP_004410031.1| - 0.076 12.9 0.3 0.46 10.4 0.1 2.0 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|330835303|ref|YP_004410031.1| - 0.11 12.8 0.4 0.93 9.8 0.4 2.3 1 1 0 1 1 1 0 AAA domain DUF4438 PF14505.6 gi|330835303|ref|YP_004410031.1| - 0.15 11.0 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4438) AAA_24 PF13479.6 gi|330835303|ref|YP_004410031.1| - 0.18 11.5 0.1 2.6 7.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Fer4_10 PF13237.6 gi|330835304|ref|YP_004410032.1| - 1.5e-06 28.2 7.0 2.5e-06 27.5 7.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835304|ref|YP_004410032.1| - 1.1e-05 25.9 7.4 1.1e-05 25.9 7.4 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835304|ref|YP_004410032.1| - 0.00029 20.8 10.8 0.032 14.3 0.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|330835304|ref|YP_004410032.1| - 0.00075 19.2 14.2 0.0021 17.8 0.8 3.0 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330835304|ref|YP_004410032.1| - 0.00083 19.5 4.8 0.0021 18.2 4.8 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835304|ref|YP_004410032.1| - 0.0021 19.0 2.9 1 10.4 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330835304|ref|YP_004410032.1| - 0.037 14.2 4.1 0.078 13.1 4.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330835304|ref|YP_004410032.1| - 0.24 12.5 13.4 2.6 9.2 5.2 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330835304|ref|YP_004410032.1| - 0.25 11.5 15.5 0.3 11.3 0.2 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_11 PF13247.6 gi|330835304|ref|YP_004410032.1| - 0.55 10.4 5.7 0.053 13.7 1.0 1.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|330835304|ref|YP_004410032.1| - 0.71 9.7 6.2 0.35 10.7 3.1 1.9 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.6 gi|330835304|ref|YP_004410032.1| - 1.8 9.2 8.8 69 4.1 8.9 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835304|ref|YP_004410032.1| - 2.2 8.8 10.5 3.1 8.3 7.3 2.6 3 1 0 3 3 3 0 4Fe-4S dicluster domain COX1 PF00115.20 gi|330835305|ref|YP_004410033.1| - 4.4e-80 269.6 63.8 4.4e-80 269.6 63.8 1.7 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I Rdx PF10262.9 gi|330835306|ref|YP_004410034.1| - 9.7e-15 54.5 0.0 1.1e-14 54.4 0.0 1.0 1 0 0 1 1 1 1 Rdx family Imm70 PF15601.6 gi|330835306|ref|YP_004410034.1| - 0.085 12.4 0.1 0.1 12.1 0.1 1.1 1 0 0 1 1 1 0 Immunity protein 70 Radical_SAM PF04055.21 gi|330835308|ref|YP_004410036.1| - 1e-05 26.0 0.5 0.00012 22.5 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330835308|ref|YP_004410036.1| - 0.041 14.2 0.0 0.11 12.8 0.0 1.7 2 0 0 2 2 2 0 4Fe-4S single cluster domain tRNA-synt_1 PF00133.22 gi|330835309|ref|YP_004410037.1| - 2.3e-58 197.9 0.0 7.1e-47 160.0 0.0 2.4 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|330835309|ref|YP_004410037.1| - 9.3e-25 87.2 0.7 8.3e-13 47.8 0.0 4.0 3 1 1 4 4 4 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|330835309|ref|YP_004410037.1| - 1.4e-18 67.3 0.8 3.3e-18 66.1 0.8 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|330835309|ref|YP_004410037.1| - 3.1e-11 43.2 0.0 1.2e-05 24.8 0.0 2.8 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|330835309|ref|YP_004410037.1| - 6.6e-11 42.1 0.0 1.3e-10 41.1 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 YxiJ PF14176.6 gi|330835309|ref|YP_004410037.1| - 0.079 13.4 0.0 11 6.6 0.0 3.0 2 0 0 2 2 2 0 YxiJ-like protein Wzy_C PF04932.15 gi|330835310|ref|YP_004410038.1| - 0.0019 17.9 0.2 0.0025 17.5 0.2 1.2 1 0 0 1 1 1 1 O-Antigen ligase MAS20 PF02064.15 gi|330835310|ref|YP_004410038.1| - 0.002 18.2 0.1 0.004 17.2 0.1 1.5 1 0 0 1 1 1 1 MAS20 protein import receptor NIF3 PF01784.18 gi|330835310|ref|YP_004410038.1| - 0.017 14.8 0.0 0.035 13.7 0.0 1.5 2 0 0 2 2 2 0 NIF3 (NGG1p interacting factor 3) PLDc_2 PF13091.6 gi|330835310|ref|YP_004410038.1| - 0.028 14.3 0.0 0.082 12.8 0.0 1.7 1 0 0 1 1 1 0 PLD-like domain DUF846 PF05832.12 gi|330835310|ref|YP_004410038.1| - 0.054 13.5 0.2 0.082 12.9 0.2 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF846) MIT_C PF16565.5 gi|330835310|ref|YP_004410038.1| - 0.063 13.3 0.1 0.13 12.3 0.1 1.5 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT FeoB_associated PF12669.7 gi|330835310|ref|YP_004410038.1| - 0.19 12.2 0.0 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 FeoB-associated Cys-rich membrane protein Phage_holin_2_1 PF04971.12 gi|330835310|ref|YP_004410038.1| - 0.77 9.8 0.0 0.77 9.8 0.0 2.2 3 0 0 3 3 3 0 Bacteriophage P21 holin S Peptidase_M1 PF01433.20 gi|330835311|ref|YP_004410039.1| - 2.2e-82 275.8 0.2 4.1e-82 275.0 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|330835311|ref|YP_004410039.1| - 5.7e-35 121.2 0.0 3.7e-34 118.5 0.0 2.1 2 0 0 2 2 2 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|330835311|ref|YP_004410039.1| - 3.4e-32 112.3 0.1 5e-32 111.7 0.1 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Aminopep PF10023.9 gi|330835311|ref|YP_004410039.1| - 0.071 12.5 0.0 0.36 10.1 0.0 2.0 2 0 0 2 2 2 0 Putative aminopeptidase HKR_ArcB_TM PF18415.1 gi|330835311|ref|YP_004410039.1| - 0.095 13.5 0.0 0.22 12.3 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain DUF4306 PF14154.6 gi|330835311|ref|YP_004410039.1| - 0.2 11.9 0.7 0.75 10.0 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4306) 7kD_DNA_binding PF02294.18 gi|330835312|ref|YP_004410040.1| - 1.1e-39 134.2 5.1 1.2e-39 134.1 5.1 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain HCV_NS1 PF01560.17 gi|330835315|ref|YP_004410043.1| - 0.75 8.4 1.6 0.78 8.3 1.6 1.1 1 0 0 1 1 1 0 Hepatitis C virus non-structural protein E2/NS1 DUF1774 PF08611.10 gi|330835315|ref|YP_004410043.1| - 2.3 8.6 11.2 2.6 8.4 11.2 1.1 1 0 0 1 1 1 0 Fungal protein of unknown function (DUF1774) Methyltr_RsmB-F PF01189.17 gi|330835316|ref|YP_004410044.1| - 4.9e-36 124.3 0.0 6.2e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F PCMT PF01135.19 gi|330835316|ref|YP_004410044.1| - 2e-06 27.7 0.0 3e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|330835316|ref|YP_004410044.1| - 0.00068 19.5 0.0 0.00099 18.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|330835316|ref|YP_004410044.1| - 0.0057 16.0 0.0 0.0089 15.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|330835316|ref|YP_004410044.1| - 0.0063 17.2 0.0 0.012 16.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|330835316|ref|YP_004410044.1| - 0.016 14.5 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|330835316|ref|YP_004410044.1| - 0.04 13.0 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MTS PF05175.14 gi|330835316|ref|YP_004410044.1| - 0.098 12.2 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain FtsJ PF01728.19 gi|330835316|ref|YP_004410044.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.6 1 1 0 1 1 1 0 FtsJ-like methyltransferase HAD_2 PF13419.6 gi|330835318|ref|YP_004410046.1| - 9.1e-25 87.8 0.0 1.1e-24 87.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330835318|ref|YP_004410046.1| - 2.3e-17 64.0 0.0 5.9e-15 56.1 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330835318|ref|YP_004410046.1| - 6.2e-08 33.3 0.0 9e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|330835318|ref|YP_004410046.1| - 0.007 16.4 0.0 0.021 14.9 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|330835318|ref|YP_004410046.1| - 0.092 12.9 0.0 1 9.5 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF790 PF05626.11 gi|330835319|ref|YP_004410047.1| - 9.9e-107 357.0 1.5 1.9e-106 356.1 1.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF790) HTH_DeoR PF08220.12 gi|330835319|ref|YP_004410047.1| - 2.3e-05 24.0 0.1 0.00025 20.7 0.0 2.8 4 0 0 4 4 4 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|330835319|ref|YP_004410047.1| - 0.001 19.0 0.1 0.014 15.4 0.0 2.9 3 0 0 3 3 3 1 HTH domain Put_DNA-bind_N PF06971.13 gi|330835319|ref|YP_004410047.1| - 0.0025 17.8 1.1 0.019 14.9 0.1 3.2 3 1 0 3 3 3 1 Putative DNA-binding protein N-terminus HTH_Mga PF08280.11 gi|330835319|ref|YP_004410047.1| - 0.0069 16.4 0.0 0.054 13.5 0.0 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain MHC_II_alpha PF00993.20 gi|330835319|ref|YP_004410047.1| - 0.069 12.8 0.0 5.1 6.8 0.0 2.5 2 0 0 2 2 2 0 Class II histocompatibility antigen, alpha domain ResIII PF04851.15 gi|330835320|ref|YP_004410048.1| - 3e-22 79.4 0.0 6.5e-22 78.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|330835320|ref|YP_004410048.1| - 1.2e-17 64.3 0.0 4.8e-17 62.3 0.0 2.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|330835320|ref|YP_004410048.1| - 8.2e-16 58.0 0.1 1.5e-15 57.1 0.1 1.5 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase DEAD PF00270.29 gi|330835320|ref|YP_004410048.1| - 1.4e-09 38.0 0.0 5.4e-09 36.1 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase XPB_DRD PF18458.1 gi|330835320|ref|YP_004410048.1| - 1.5e-08 34.4 0.0 3.5e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain SNF2_N PF00176.23 gi|330835320|ref|YP_004410048.1| - 3.3e-06 26.1 0.3 0.00045 19.1 0.1 2.6 1 1 1 2 2 2 2 SNF2 family N-terminal domain Helicase_C_2 PF13307.6 gi|330835320|ref|YP_004410048.1| - 0.021 15.0 0.2 0.51 10.5 0.0 2.4 2 0 0 2 2 2 0 Helicase C-terminal domain AAA_7 PF12775.7 gi|330835320|ref|YP_004410048.1| - 0.16 11.4 0.0 2.6 7.5 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region Lactamase_B PF00753.27 gi|330835321|ref|YP_004410049.1| - 1.9e-05 24.7 1.3 0.00052 20.1 0.5 2.2 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|330835321|ref|YP_004410049.1| - 0.00038 20.4 0.1 0.00064 19.6 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|330835321|ref|YP_004410049.1| - 0.0012 18.4 0.4 0.0041 16.7 0.4 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HTH_8 PF02954.19 gi|330835321|ref|YP_004410049.1| - 0.023 14.5 0.3 0.065 13.0 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family DHH PF01368.20 gi|330835321|ref|YP_004410049.1| - 0.027 14.7 0.1 0.16 12.3 0.0 2.0 2 0 0 2 2 2 0 DHH family LacI PF00356.21 gi|330835321|ref|YP_004410049.1| - 0.033 14.0 0.1 0.076 12.8 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family VIT1 PF01988.19 gi|330835322|ref|YP_004410050.1| - 3.9e-46 157.6 0.0 4.6e-46 157.4 0.0 1.0 1 0 0 1 1 1 1 VIT family DUF4781 PF16013.5 gi|330835322|ref|YP_004410050.1| - 0.087 11.6 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DUF2723 PF11028.8 gi|330835322|ref|YP_004410050.1| - 1.1 9.1 4.3 0.71 9.8 0.8 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2723) AAA_assoc_C PF09821.9 gi|330835323|ref|YP_004410051.1| - 6.7e-31 107.3 0.1 1.1e-30 106.6 0.1 1.3 1 0 0 1 1 1 1 C-terminal AAA-associated domain Glyco_hydro_80 PF13647.6 gi|330835323|ref|YP_004410051.1| - 0.056 12.9 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 80 of chitosanase A PaREP1 PF05942.11 gi|330835326|ref|YP_004410054.1| - 2.2e-07 30.8 0.4 1.1e-06 28.5 0.4 1.9 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TrmB PF01978.19 gi|330835328|ref|YP_004410056.1| - 3.2e-05 23.7 0.2 6.4e-05 22.8 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|330835328|ref|YP_004410056.1| - 0.00025 20.6 2.0 0.0007 19.1 2.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330835328|ref|YP_004410056.1| - 0.00069 19.4 0.5 0.0014 18.4 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|330835328|ref|YP_004410056.1| - 0.00099 18.9 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|330835328|ref|YP_004410056.1| - 0.0051 16.9 0.1 0.0085 16.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|330835328|ref|YP_004410056.1| - 0.042 13.7 0.1 0.07 13.0 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|330835328|ref|YP_004410056.1| - 0.18 11.9 0.1 0.27 11.3 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_43 PF09904.9 gi|330835328|ref|YP_004410056.1| - 0.19 11.7 0.0 0.36 10.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix NPCBM_assoc PF10633.9 gi|330835330|ref|YP_004410058.1| - 3.1e-11 43.4 13.8 0.0017 18.5 0.0 8.7 9 2 0 9 9 9 2 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|330835330|ref|YP_004410058.1| - 6.6e-05 23.1 19.3 0.72 10.2 0.4 7.2 5 1 2 7 7 7 4 CARDB EIAV_Rev PF11129.8 gi|330835330|ref|YP_004410058.1| - 0.15 12.2 0.0 20 5.4 0.0 2.3 2 0 0 2 2 2 0 Rev protein of equine infectious anaemia virus OppC_N PF12911.7 gi|330835330|ref|YP_004410058.1| - 3.3 7.8 6.4 12 6.0 6.4 2.0 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C TRAP_beta PF05753.14 gi|330835330|ref|YP_004410058.1| - 3.9 6.8 19.8 12 5.2 0.3 6.3 7 0 0 7 7 7 0 Translocon-associated protein beta (TRAPB) DUF4346 PF14251.6 gi|330835331|ref|YP_004410059.1| - 0.00015 21.7 0.1 0.00064 19.7 0.1 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) CbiC PF02570.15 gi|330835331|ref|YP_004410059.1| - 0.0042 16.8 0.0 0.0078 15.9 0.0 1.4 1 0 0 1 1 1 1 Precorrin-8X methylmutase PTPS PF01242.19 gi|330835333|ref|YP_004410061.1| - 5.3e-23 81.3 0.0 6.3e-23 81.1 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase TetR_C_36 PF18598.1 gi|330835334|ref|YP_004410062.1| - 0.063 13.2 0.1 0.14 12.1 0.1 1.6 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Pyr_redox_2 PF07992.14 gi|330835334|ref|YP_004410062.1| - 0.12 11.6 0.0 0.12 11.6 0.0 1.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HEPN PF05168.14 gi|330835336|ref|YP_004410064.1| - 0.00087 19.4 0.0 0.0011 19.1 0.0 1.1 1 0 0 1 1 1 1 HEPN domain MAF_flag10 PF01973.18 gi|330835338|ref|YP_004410066.1| - 4.8e-20 71.9 0.1 6.6e-20 71.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|330835338|ref|YP_004410066.1| - 0.00027 21.0 0.0 0.00046 20.2 0.0 1.3 1 0 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain HMGL-like PF00682.19 gi|330835339|ref|YP_004410067.1| - 7e-89 297.9 0.1 9.4e-89 297.5 0.1 1.2 1 0 0 1 1 1 1 HMGL-like Lactamase_B_3 PF13483.6 gi|330835340|ref|YP_004410068.1| - 1.4e-27 96.5 0.1 2e-27 96.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|330835340|ref|YP_004410068.1| - 3.4e-13 49.6 0.5 7e-09 35.5 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain RHH_1 PF01402.21 gi|330835341|ref|YP_004410069.1| - 7.2e-08 32.1 0.7 1e-07 31.6 0.7 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|330835341|ref|YP_004410069.1| - 0.0027 17.6 0.6 0.004 17.1 0.4 1.4 1 1 0 1 1 1 1 Ribbon-helix-helix domain SlyX PF04102.12 gi|330835342|ref|YP_004410070.1| - 0.066 13.8 3.0 0.066 13.8 3.0 1.6 2 0 0 2 2 2 0 SlyX AsnC_trans_reg PF01037.21 gi|330835343|ref|YP_004410071.1| - 2.4e-08 33.8 0.0 2.7e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|330835343|ref|YP_004410071.1| - 0.0035 17.4 0.0 0.028 14.5 0.0 1.9 1 1 0 1 1 1 1 NapD protein ABC2_membrane_3 PF12698.7 gi|330835344|ref|YP_004410072.1| - 3.3e-12 46.2 35.2 6.2e-12 45.3 35.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|330835344|ref|YP_004410072.1| - 7.6e-08 32.0 24.2 1.5e-07 31.0 24.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|330835344|ref|YP_004410072.1| - 0.001 19.1 12.5 0.001 19.1 12.5 3.3 2 1 1 3 3 3 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|330835345|ref|YP_004410073.1| - 5.6e-25 88.4 0.0 7.7e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835345|ref|YP_004410073.1| - 1.5e-11 44.7 0.7 6.5e-05 22.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330835345|ref|YP_004410073.1| - 0.00046 20.8 0.3 0.00087 19.8 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|330835345|ref|YP_004410073.1| - 0.0034 17.1 0.0 0.0069 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|330835345|ref|YP_004410073.1| - 0.0035 16.8 0.1 2.2 7.6 0.1 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|330835345|ref|YP_004410073.1| - 0.022 13.9 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|330835345|ref|YP_004410073.1| - 0.026 14.5 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_27 PF13514.6 gi|330835345|ref|YP_004410073.1| - 0.039 13.6 0.0 0.065 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|330835345|ref|YP_004410073.1| - 0.072 13.0 0.3 0.17 11.8 0.1 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_29 PF13555.6 gi|330835345|ref|YP_004410073.1| - 0.072 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|330835345|ref|YP_004410073.1| - 0.13 10.8 1.4 3.9 6.0 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|330835345|ref|YP_004410073.1| - 0.21 11.3 0.8 2 8.1 0.2 2.1 2 0 0 2 2 2 0 AAA domain Pantoate_transf PF02548.15 gi|330835347|ref|YP_004410075.1| - 1.5e-99 332.6 0.1 1.7e-99 332.4 0.1 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|330835347|ref|YP_004410075.1| - 1.2e-05 24.8 0.1 0.00057 19.4 0.0 2.2 2 0 0 2 2 2 2 Phosphoenolpyruvate phosphomutase PPS_PS PF02006.16 gi|330835348|ref|YP_004410076.1| - 3.8e-74 248.1 6.7 4.9e-74 247.7 6.7 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Iron_permease PF04120.12 gi|330835348|ref|YP_004410076.1| - 0.00074 19.3 0.4 0.0016 18.2 0.4 1.6 1 0 0 1 1 1 1 Low affinity iron permease AAA_31 PF13614.6 gi|330835348|ref|YP_004410076.1| - 0.021 14.7 0.4 0.047 13.6 0.4 1.6 1 0 0 1 1 1 0 AAA domain GHMP_kinases_N PF00288.26 gi|330835349|ref|YP_004410077.1| - 4.3e-05 23.7 0.1 7.1e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain KRTAP7 PF15034.6 gi|330835349|ref|YP_004410077.1| - 0.028 15.4 0.0 0.15 13.0 0.0 2.0 2 0 0 2 2 2 0 KRTAP type 7 family Fer4_8 PF13183.6 gi|330835350|ref|YP_004410078.1| - 3.9e-10 40.0 5.8 7.7e-10 39.1 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835350|ref|YP_004410078.1| - 3.9e-08 33.8 7.9 1e-07 32.4 7.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835350|ref|YP_004410078.1| - 1.2e-06 28.5 4.7 0.0043 17.1 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain FAD_binding_4 PF01565.23 gi|330835350|ref|YP_004410078.1| - 5e-06 26.3 0.0 1.1e-05 25.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|330835350|ref|YP_004410078.1| - 1.2e-05 25.7 6.7 2.9e-05 24.5 6.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835350|ref|YP_004410078.1| - 2.3e-05 24.5 7.8 0.00018 21.6 8.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330835350|ref|YP_004410078.1| - 0.00021 21.3 6.5 0.00059 19.9 6.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330835350|ref|YP_004410078.1| - 0.00027 21.7 0.5 0.86 10.5 0.0 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835350|ref|YP_004410078.1| - 0.0019 18.2 12.7 0.055 13.6 1.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330835350|ref|YP_004410078.1| - 0.0023 18.1 1.7 1 9.6 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835350|ref|YP_004410078.1| - 0.0025 18.7 10.6 0.077 13.9 10.2 2.9 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|330835350|ref|YP_004410078.1| - 0.0046 16.7 16.3 0.047 13.5 4.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330835350|ref|YP_004410078.1| - 0.0077 16.7 13.6 0.52 11.0 3.7 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330835350|ref|YP_004410078.1| - 0.07 13.2 13.2 1.4 9.1 1.8 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain DUF4030 PF13222.6 gi|330835350|ref|YP_004410078.1| - 0.11 12.6 2.8 0.15 12.2 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4030) Fer4_20 PF14691.6 gi|330835350|ref|YP_004410078.1| - 0.35 10.6 3.7 0.8 9.5 0.3 2.5 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.7 gi|330835350|ref|YP_004410078.1| - 1.6 9.8 18.3 2.3 9.4 6.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer2_2 PF01799.20 gi|330835351|ref|YP_004410079.1| - 4.1e-35 119.6 1.0 1.4e-34 118.0 0.1 2.0 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|330835351|ref|YP_004410079.1| - 1.6e-07 31.2 0.5 1.6e-07 31.2 0.5 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|330835351|ref|YP_004410079.1| - 0.0024 17.9 1.2 0.0024 17.9 1.2 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|330835352|ref|YP_004410080.1| - 8e-47 159.1 0.0 1.1e-46 158.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|330835352|ref|YP_004410080.1| - 2.6e-26 91.8 0.4 4.4e-26 91.0 0.4 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.23 gi|330835352|ref|YP_004410080.1| - 0.049 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 FAD binding domain TP_methylase PF00590.20 gi|330835353|ref|YP_004410081.1| - 4.1e-47 160.9 0.0 4.7e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1404 PF07185.11 gi|330835354|ref|YP_004410082.1| - 3.5e-05 23.6 11.2 3.5e-05 23.6 11.2 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1404) SIS PF01380.22 gi|330835356|ref|YP_004410084.1| - 9.3e-06 25.5 0.0 0.0049 16.7 0.0 3.1 3 0 0 3 3 3 3 SIS domain Amidohydro_1 PF01979.20 gi|330835357|ref|YP_004410085.1| - 0.0009 18.6 0.0 0.038 13.3 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Met_10 PF02475.16 gi|330835358|ref|YP_004410086.1| - 6e-42 143.7 0.0 7.3e-42 143.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.14 gi|330835358|ref|YP_004410086.1| - 0.0058 16.2 0.0 0.0095 15.5 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|330835358|ref|YP_004410086.1| - 0.034 13.5 0.0 0.05 13.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.15 gi|330835358|ref|YP_004410086.1| - 0.074 12.7 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 SNURF PF07192.11 gi|330835359|ref|YP_004410087.1| - 0.012 15.4 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 SNURF/RPN4 protein Gln-synt_C PF00120.24 gi|330835360|ref|YP_004410088.1| - 1.6e-70 237.9 0.0 2.9e-70 237.0 0.0 1.4 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|330835360|ref|YP_004410088.1| - 1.4e-06 28.1 0.0 3.8e-06 26.7 0.0 1.8 2 0 0 2 2 2 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|330835360|ref|YP_004410088.1| - 0.016 14.9 0.0 1 9.1 0.0 2.8 2 0 0 2 2 2 0 Glutamine synthetase, beta-Grasp domain ADH_zinc_N PF00107.26 gi|330835361|ref|YP_004410089.1| - 1.4e-19 70.4 0.0 2.4e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|330835361|ref|YP_004410089.1| - 2.7e-10 40.1 3.4 6.2e-10 38.9 0.7 2.4 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|330835361|ref|YP_004410089.1| - 9.8e-10 39.6 0.0 1.6e-09 38.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|330835361|ref|YP_004410089.1| - 4.9e-06 26.8 0.1 0.0029 17.8 0.0 1.8 1 1 1 2 2 2 2 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|330835361|ref|YP_004410089.1| - 6.8e-05 22.3 0.3 9.9e-05 21.7 0.3 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|330835361|ref|YP_004410089.1| - 0.00037 20.6 0.0 0.00061 19.9 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|330835361|ref|YP_004410089.1| - 0.007 16.8 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|330835361|ref|YP_004410089.1| - 0.013 16.1 0.1 0.023 15.3 0.1 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Glu_dehyd_C PF16912.5 gi|330835361|ref|YP_004410089.1| - 0.022 14.3 0.0 0.031 13.8 0.0 1.2 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus 3HCDH_N PF02737.18 gi|330835361|ref|YP_004410089.1| - 0.041 13.8 0.1 0.06 13.2 0.1 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|330835361|ref|YP_004410089.1| - 0.048 12.4 0.0 0.066 11.9 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase ApbA PF02558.16 gi|330835361|ref|YP_004410089.1| - 0.11 12.1 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA RTC PF01137.21 gi|330835362|ref|YP_004410090.1| - 1.5e-68 230.3 0.2 1.7e-68 230.1 0.2 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|330835362|ref|YP_004410090.1| - 3.5e-18 66.0 0.1 5.7e-18 65.3 0.1 1.4 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain Herpes_capsid PF06112.11 gi|330835362|ref|YP_004410090.1| - 0.45 10.6 1.8 0.75 9.8 1.8 1.3 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein IMS PF00817.20 gi|330835364|ref|YP_004410092.1| - 7.8e-41 139.6 0.2 1.5e-40 138.7 0.2 1.5 1 0 0 1 1 1 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|330835364|ref|YP_004410092.1| - 4.6e-07 29.8 0.5 2.6e-06 27.4 0.0 2.4 2 0 0 2 2 2 1 IMS family HHH motif HHH_5 PF14520.6 gi|330835364|ref|YP_004410092.1| - 5.3e-05 23.7 1.7 0.00022 21.8 0.2 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|330835364|ref|YP_004410092.1| - 0.02 14.7 0.0 0.058 13.2 0.0 1.9 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF1805 PF08827.11 gi|330835364|ref|YP_004410092.1| - 0.037 14.3 0.5 6.2 7.2 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) UPF0113_N PF17833.1 gi|330835364|ref|YP_004410092.1| - 0.041 14.4 0.1 0.15 12.6 0.1 2.0 2 0 0 2 2 2 0 UPF0113 Pre-PUA domain P2 PF07194.11 gi|330835364|ref|YP_004410092.1| - 0.046 13.8 0.0 0.13 12.3 0.0 1.8 1 0 0 1 1 1 0 P2 response regulator binding domain Guanylate_cyc PF00211.20 gi|330835364|ref|YP_004410092.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Adenylate and Guanylate cyclase catalytic domain HHH PF00633.23 gi|330835364|ref|YP_004410092.1| - 0.086 12.8 0.3 0.85 9.6 0.1 2.8 3 0 0 3 3 3 0 Helix-hairpin-helix motif IMS_C PF11799.8 gi|330835364|ref|YP_004410092.1| - 0.096 13.4 1.2 1.6 9.4 0.0 2.6 2 1 0 2 2 2 0 impB/mucB/samB family C-terminal domain RecG_wedge PF17191.4 gi|330835364|ref|YP_004410092.1| - 0.12 12.0 3.7 2.7 7.6 0.1 2.8 3 0 0 3 3 3 0 RecG wedge domain PfkB PF00294.24 gi|330835365|ref|YP_004410093.1| - 4.4e-28 98.5 0.0 3.2e-17 62.8 0.5 2.0 2 0 0 2 2 2 2 pfkB family carbohydrate kinase TIP49 PF06068.13 gi|330835366|ref|YP_004410094.1| - 3.9e-135 450.6 1.7 5.7e-135 450.0 1.7 1.2 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|330835366|ref|YP_004410094.1| - 7.3e-22 77.3 0.1 1.3e-20 73.3 0.3 2.7 2 0 0 2 2 2 1 TIP49 AAA-lid domain AAA PF00004.29 gi|330835366|ref|YP_004410094.1| - 4.8e-08 33.5 0.9 4e-06 27.3 0.2 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|330835366|ref|YP_004410094.1| - 7.2e-07 29.1 0.1 5.6e-05 22.9 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|330835366|ref|YP_004410094.1| - 1.2e-05 25.6 0.5 0.04 14.2 0.1 2.8 2 1 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|330835366|ref|YP_004410094.1| - 3.1e-05 23.6 0.1 0.0014 18.1 0.0 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_16 PF13191.6 gi|330835366|ref|YP_004410094.1| - 5.2e-05 23.7 3.0 0.00044 20.7 0.7 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.14 gi|330835366|ref|YP_004410094.1| - 5.3e-05 23.2 0.2 0.015 15.3 0.1 2.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|330835366|ref|YP_004410094.1| - 0.0002 20.8 0.4 0.0011 18.4 0.1 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI TFIID-31kDa PF02291.15 gi|330835366|ref|YP_004410094.1| - 0.0012 18.9 0.3 1.1 9.4 0.0 2.4 2 0 0 2 2 2 2 Transcription initiation factor IID, 31kD subunit AAA_33 PF13671.6 gi|330835366|ref|YP_004410094.1| - 0.0022 18.2 0.0 0.0055 16.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|330835366|ref|YP_004410094.1| - 0.0038 17.0 0.2 0.03 14.0 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.6 gi|330835366|ref|YP_004410094.1| - 0.0055 16.3 0.6 0.015 14.8 0.5 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|330835366|ref|YP_004410094.1| - 0.006 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Cytidylate kinase IstB_IS21 PF01695.17 gi|330835366|ref|YP_004410094.1| - 0.0065 16.2 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein NACHT PF05729.12 gi|330835366|ref|YP_004410094.1| - 0.01 15.8 0.0 0.02 14.8 0.0 1.5 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.27 gi|330835366|ref|YP_004410094.1| - 0.014 15.9 0.4 0.057 13.9 0.2 2.1 1 1 1 2 2 2 0 ABC transporter TsaE PF02367.17 gi|330835366|ref|YP_004410094.1| - 0.016 15.2 0.0 0.041 13.9 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DnaB_C PF03796.15 gi|330835366|ref|YP_004410094.1| - 0.027 13.8 0.1 0.07 12.5 0.1 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain RNA_helicase PF00910.22 gi|330835366|ref|YP_004410094.1| - 0.027 14.8 0.0 0.049 14.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|330835366|ref|YP_004410094.1| - 0.032 14.1 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_18 PF13238.6 gi|330835366|ref|YP_004410094.1| - 0.036 14.6 0.2 0.1 13.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|330835366|ref|YP_004410094.1| - 0.041 13.0 0.1 0.083 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.16 gi|330835366|ref|YP_004410094.1| - 0.047 13.1 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_2 PF07724.14 gi|330835366|ref|YP_004410094.1| - 0.064 13.4 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF2075 PF09848.9 gi|330835366|ref|YP_004410094.1| - 0.1 11.8 0.1 0.16 11.1 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.15 gi|330835366|ref|YP_004410094.1| - 0.14 12.2 0.0 1 9.3 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|330835366|ref|YP_004410094.1| - 0.18 11.6 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.6 gi|330835366|ref|YP_004410094.1| - 0.18 12.1 2.6 1.1 9.6 0.7 2.5 2 1 0 2 2 2 0 AAA domain NUDIX PF00293.28 gi|330835367|ref|YP_004410095.1| - 1.1e-20 74.0 0.1 1.3e-20 73.8 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|330835367|ref|YP_004410095.1| - 0.0027 17.7 0.0 0.004 17.1 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain MS_channel PF00924.18 gi|330835369|ref|YP_004410097.1| - 8e-24 84.3 1.7 1.2e-23 83.8 1.7 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF4311 PF14188.6 gi|330835369|ref|YP_004410097.1| - 0.38 10.5 8.4 0.56 10.0 7.9 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4311) TM_helix PF05552.12 gi|330835369|ref|YP_004410097.1| - 6.7 6.8 9.4 0.44 10.6 0.6 2.8 2 1 0 2 2 2 0 Conserved TM helix Pyr_redox_2 PF07992.14 gi|330835370|ref|YP_004410098.1| - 2.1e-48 165.1 0.2 2.6e-48 164.8 0.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330835370|ref|YP_004410098.1| - 1.5e-25 90.1 1.4 8.6e-25 87.6 0.1 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835370|ref|YP_004410098.1| - 6.6e-14 52.2 2.9 1.5e-13 51.1 0.6 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330835370|ref|YP_004410098.1| - 2.9e-06 26.2 0.5 0.019 13.7 0.0 3.3 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_2 PF00890.24 gi|330835370|ref|YP_004410098.1| - 7.5e-06 25.3 0.3 0.42 9.6 0.1 3.4 4 0 0 4 4 4 2 FAD binding domain K_oxygenase PF13434.6 gi|330835370|ref|YP_004410098.1| - 2e-05 23.9 0.1 0.006 15.8 0.0 2.9 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|330835370|ref|YP_004410098.1| - 5.2e-05 22.5 2.2 2.2 7.3 0.2 4.0 3 1 0 4 4 4 2 Glucose inhibited division protein A FMO-like PF00743.19 gi|330835370|ref|YP_004410098.1| - 0.00026 19.6 0.0 0.00032 19.3 0.0 1.1 1 0 0 1 1 1 1 Flavin-binding monooxygenase-like Thi4 PF01946.17 gi|330835370|ref|YP_004410098.1| - 0.001 18.3 0.8 0.45 9.7 0.0 2.8 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.7 gi|330835370|ref|YP_004410098.1| - 0.0012 18.2 2.1 0.02 14.2 0.0 2.9 2 1 1 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|330835370|ref|YP_004410098.1| - 0.0022 18.4 0.3 0.05 14.0 0.1 2.4 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|330835370|ref|YP_004410098.1| - 0.016 15.2 0.2 0.65 10.0 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.19 gi|330835370|ref|YP_004410098.1| - 0.11 11.7 0.0 0.65 9.2 0.0 2.0 2 0 0 2 2 2 0 FAD binding domain NAD_binding_8 PF13450.6 gi|330835370|ref|YP_004410098.1| - 0.17 12.2 0.3 17 5.7 0.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AAA PF00004.29 gi|330835371|ref|YP_004410099.1| - 1.8e-82 274.3 0.0 4.5e-40 137.1 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330835371|ref|YP_004410099.1| - 4.1e-25 87.3 7.4 3.2e-14 52.5 0.7 3.1 3 0 0 3 3 3 2 AAA+ lid domain AAA_2 PF07724.14 gi|330835371|ref|YP_004410099.1| - 8.6e-14 52.0 3.5 3.3e-07 30.6 0.0 3.6 5 0 0 5 5 3 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|330835371|ref|YP_004410099.1| - 1.4e-13 51.0 1.4 4.1e-06 26.9 0.0 4.0 4 0 0 4 4 4 2 AAA domain RuvB_N PF05496.12 gi|330835371|ref|YP_004410099.1| - 1.5e-11 44.3 0.0 1.1e-05 25.3 0.0 3.2 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|330835371|ref|YP_004410099.1| - 1.9e-11 44.6 0.6 0.011 16.1 0.0 4.6 3 2 0 5 5 4 2 AAA ATPase domain AAA_5 PF07728.14 gi|330835371|ref|YP_004410099.1| - 7.5e-11 42.2 1.3 0.0012 18.8 0.7 4.0 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|330835371|ref|YP_004410099.1| - 8.8e-11 42.2 5.8 0.0034 17.6 0.0 4.8 3 2 0 4 4 4 2 AAA domain AAA_18 PF13238.6 gi|330835371|ref|YP_004410099.1| - 1.2e-09 38.8 0.0 0.0005 20.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|330835371|ref|YP_004410099.1| - 2e-08 34.4 0.7 0.0082 16.1 0.0 3.7 2 2 1 3 3 3 2 Rad17 P-loop domain AAA_17 PF13207.6 gi|330835371|ref|YP_004410099.1| - 3.2e-08 34.1 0.1 0.02 15.3 0.0 3.2 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|330835371|ref|YP_004410099.1| - 3.7e-08 33.7 0.0 0.0067 16.8 0.0 3.3 3 0 0 3 3 2 2 RNA helicase IstB_IS21 PF01695.17 gi|330835371|ref|YP_004410099.1| - 6.6e-08 32.5 0.0 0.016 14.9 0.0 2.9 2 1 1 3 3 3 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|330835371|ref|YP_004410099.1| - 1e-07 32.2 0.0 0.023 14.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|330835371|ref|YP_004410099.1| - 5.6e-07 29.1 1.8 0.0026 17.2 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Vps4_C PF09336.10 gi|330835371|ref|YP_004410099.1| - 6e-07 29.4 0.7 0.00036 20.5 0.1 3.3 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_3 PF07726.11 gi|330835371|ref|YP_004410099.1| - 2.1e-06 27.6 0.0 0.017 15.0 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|330835371|ref|YP_004410099.1| - 4.3e-06 26.7 0.0 0.016 15.2 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|330835371|ref|YP_004410099.1| - 5.3e-06 26.1 0.0 0.076 12.5 0.0 2.6 2 0 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|330835371|ref|YP_004410099.1| - 6.7e-06 26.1 0.4 0.2 11.6 0.1 3.6 2 2 1 3 3 3 2 NACHT domain AAA_28 PF13521.6 gi|330835371|ref|YP_004410099.1| - 7.2e-06 26.3 0.0 0.29 11.4 0.0 3.1 3 0 0 3 3 2 2 AAA domain TIP49 PF06068.13 gi|330835371|ref|YP_004410099.1| - 1.6e-05 24.3 0.0 0.073 12.3 0.0 2.5 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_24 PF13479.6 gi|330835371|ref|YP_004410099.1| - 1.6e-05 24.7 4.1 0.026 14.3 0.1 3.9 4 1 0 4 4 4 2 AAA domain AAA_25 PF13481.6 gi|330835371|ref|YP_004410099.1| - 1.8e-05 24.4 1.6 0.37 10.3 0.5 3.4 2 1 0 2 2 2 1 AAA domain AFG1_ATPase PF03969.16 gi|330835371|ref|YP_004410099.1| - 2e-05 23.7 0.1 0.029 13.3 0.0 2.6 2 1 0 2 2 2 2 AFG1-like ATPase ABC_tran PF00005.27 gi|330835371|ref|YP_004410099.1| - 2.4e-05 24.8 0.1 0.14 12.7 0.0 3.1 2 1 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|330835371|ref|YP_004410099.1| - 6e-05 22.3 0.0 0.13 11.4 0.1 2.6 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|330835371|ref|YP_004410099.1| - 0.00011 22.2 0.0 0.072 12.9 0.0 2.9 2 2 0 2 2 2 1 Bacterial dnaA protein ATPase_2 PF01637.18 gi|330835371|ref|YP_004410099.1| - 0.00029 20.9 6.2 0.47 10.3 0.0 4.7 4 2 2 6 6 3 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|330835371|ref|YP_004410099.1| - 0.00055 19.7 0.0 1.6 8.4 0.0 2.9 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_30 PF13604.6 gi|330835371|ref|YP_004410099.1| - 0.00068 19.4 0.0 1.3 8.7 0.0 2.7 2 0 0 2 2 2 2 AAA domain PPV_E1_C PF00519.17 gi|330835371|ref|YP_004410099.1| - 0.00071 18.5 0.0 0.23 10.3 0.0 2.2 2 0 0 2 2 2 1 Papillomavirus helicase ATPase PF06745.13 gi|330835371|ref|YP_004410099.1| - 0.0013 18.2 2.2 1.2 8.4 0.0 3.4 4 0 0 4 4 4 2 KaiC TniB PF05621.11 gi|330835371|ref|YP_004410099.1| - 0.0014 18.0 0.4 0.33 10.4 0.0 3.5 3 0 0 3 3 3 1 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|330835371|ref|YP_004410099.1| - 0.0042 16.2 0.0 0.3 10.1 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.6 gi|330835371|ref|YP_004410099.1| - 0.0046 17.1 0.0 4.8 7.3 0.0 2.8 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|330835371|ref|YP_004410099.1| - 0.0056 17.0 0.0 6.8 7.0 0.0 2.8 2 0 0 2 2 2 0 AAA domain Guanylate_kin PF00625.21 gi|330835371|ref|YP_004410099.1| - 0.006 16.3 3.2 2 8.1 0.0 4.6 4 3 2 7 7 5 1 Guanylate kinase Glutaredoxin PF00462.24 gi|330835371|ref|YP_004410099.1| - 0.0069 16.6 0.0 0.19 12.0 0.0 3.1 3 0 0 3 3 3 1 Glutaredoxin Zeta_toxin PF06414.12 gi|330835371|ref|YP_004410099.1| - 0.0074 15.6 0.0 0.52 9.5 0.0 2.6 2 0 0 2 2 2 1 Zeta toxin ResIII PF04851.15 gi|330835371|ref|YP_004410099.1| - 0.0075 16.3 1.7 8.7 6.3 0.0 3.7 2 2 1 3 3 3 0 Type III restriction enzyme, res subunit MMR_HSR1 PF01926.23 gi|330835371|ref|YP_004410099.1| - 0.0076 16.3 0.0 6.9 6.8 0.0 3.8 3 1 0 3 3 3 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|330835371|ref|YP_004410099.1| - 0.013 15.4 0.1 5.2 7.0 0.0 3.0 3 0 0 3 3 2 0 RsgA GTPase Viral_helicase1 PF01443.18 gi|330835371|ref|YP_004410099.1| - 0.015 15.0 0.0 1.2 8.9 0.0 2.5 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.16 gi|330835371|ref|YP_004410099.1| - 0.018 14.5 0.2 8.7 5.7 0.0 3.2 4 0 0 4 4 2 0 PhoH-like protein KTI12 PF08433.10 gi|330835371|ref|YP_004410099.1| - 0.02 14.4 1.1 0.7 9.3 0.1 3.3 3 1 0 3 3 3 0 Chromatin associated protein KTI12 AAA_6 PF12774.7 gi|330835371|ref|YP_004410099.1| - 0.034 13.1 0.0 3.1 6.7 0.0 2.5 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region NB-ARC PF00931.22 gi|330835371|ref|YP_004410099.1| - 0.035 13.3 0.1 3 7.0 0.0 2.6 2 0 0 2 2 2 0 NB-ARC domain NTPase_1 PF03266.15 gi|330835371|ref|YP_004410099.1| - 0.036 14.0 0.7 1.9 8.4 0.0 3.3 4 0 0 4 4 2 0 NTPase Cytidylate_kin PF02224.18 gi|330835371|ref|YP_004410099.1| - 0.036 13.8 0.0 1.1 8.9 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase Cytidylate_kin2 PF13189.6 gi|330835371|ref|YP_004410099.1| - 0.04 14.0 0.0 3.8 7.6 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family EF-hand_7 PF13499.6 gi|330835371|ref|YP_004410099.1| - 0.042 14.3 0.4 15 6.1 0.0 3.3 3 0 0 3 3 2 0 EF-hand domain pair PduV-EutP PF10662.9 gi|330835371|ref|YP_004410099.1| - 0.047 13.4 0.0 2.1 8.1 0.0 2.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Adeno_IVa2 PF02456.15 gi|330835371|ref|YP_004410099.1| - 0.051 12.4 0.0 2.1 7.0 0.0 2.3 2 0 0 2 2 2 0 Adenovirus IVa2 protein SKI PF01202.22 gi|330835371|ref|YP_004410099.1| - 0.056 13.6 0.2 4.4 7.4 0.1 3.0 2 1 0 2 2 2 0 Shikimate kinase ATP-synt_ab PF00006.25 gi|330835371|ref|YP_004410099.1| - 0.056 13.1 0.0 7.1 6.2 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain KAP_NTPase PF07693.14 gi|330835371|ref|YP_004410099.1| - 0.07 12.3 0.3 0.65 9.2 0.0 2.6 4 0 0 4 4 2 0 KAP family P-loop domain AAA_29 PF13555.6 gi|330835371|ref|YP_004410099.1| - 0.11 12.2 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain SRPRB PF09439.10 gi|330835371|ref|YP_004410099.1| - 0.33 10.4 3.9 7 6.0 0.0 4.1 5 0 0 5 5 4 0 Signal recognition particle receptor beta subunit AAA_11 PF13086.6 gi|330835371|ref|YP_004410099.1| - 7.7 6.2 11.9 6.5 6.4 0.0 3.9 3 2 2 5 5 4 0 AAA domain Amino_oxidase PF01593.24 gi|330835372|ref|YP_004410100.1| - 7.1e-15 55.2 0.1 2e-13 50.5 0.0 2.1 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase DAO PF01266.24 gi|330835372|ref|YP_004410100.1| - 1.2e-13 51.4 4.9 3.6e-12 46.6 5.0 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|330835372|ref|YP_004410100.1| - 3.3e-11 43.2 0.2 9.9e-11 41.7 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|330835372|ref|YP_004410100.1| - 3.1e-10 39.8 0.2 1.7e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835372|ref|YP_004410100.1| - 9.4e-08 32.5 2.9 0.0077 16.8 0.7 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|330835372|ref|YP_004410100.1| - 1.5e-07 30.9 0.8 8.3e-06 25.2 0.3 2.3 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|330835372|ref|YP_004410100.1| - 4.4e-07 29.6 0.1 9.3e-06 25.2 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330835372|ref|YP_004410100.1| - 2.9e-06 26.6 6.4 0.00026 20.2 2.1 2.8 3 0 0 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|330835372|ref|YP_004410100.1| - 4.5e-06 25.6 1.2 0.0014 17.5 0.6 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|330835372|ref|YP_004410100.1| - 4.6e-05 22.8 0.4 0.0019 17.5 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|330835372|ref|YP_004410100.1| - 6.1e-05 22.3 3.0 0.00055 19.1 1.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|330835372|ref|YP_004410100.1| - 0.00014 20.9 3.8 0.092 11.6 0.8 2.2 2 0 0 2 2 2 2 Tryptophan halogenase GDI PF00996.18 gi|330835372|ref|YP_004410100.1| - 0.07 11.6 0.1 2.6 6.5 0.0 2.1 2 0 0 2 2 2 0 GDP dissociation inhibitor GMC_oxred_N PF00732.19 gi|330835372|ref|YP_004410100.1| - 0.099 12.0 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|330835372|ref|YP_004410100.1| - 0.36 10.8 1.3 3.7 7.5 0.2 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Phosphodiest PF01663.22 gi|330835373|ref|YP_004410101.1| - 4e-13 49.7 0.8 1.1e-11 45.0 0.8 2.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|330835373|ref|YP_004410101.1| - 0.00028 21.0 0.0 0.015 15.4 0.0 2.2 2 0 0 2 2 2 1 PglZ domain Metalloenzyme PF01676.18 gi|330835373|ref|YP_004410101.1| - 0.12 11.8 0.0 0.37 10.1 0.0 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily Pribosyltran PF00156.27 gi|330835374|ref|YP_004410102.1| - 4.7e-26 91.2 0.2 6e-26 90.9 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|330835374|ref|YP_004410102.1| - 0.024 14.1 0.0 0.029 13.8 0.0 1.1 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase MM_CoA_mutase PF01642.22 gi|330835375|ref|YP_004410103.1| - 3e-211 702.4 0.0 3.4e-211 702.2 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|330835375|ref|YP_004410103.1| - 0.016 13.7 0.1 0.025 13.1 0.1 1.2 1 0 0 1 1 1 0 Methylaspartate mutase E chain (MutE) DUF5599 PF18141.1 gi|330835375|ref|YP_004410103.1| - 0.15 12.4 0.1 0.34 11.2 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF5599) Glyoxalase_4 PF13669.6 gi|330835376|ref|YP_004410104.1| - 4.6e-22 78.4 0.0 5.3e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|330835376|ref|YP_004410104.1| - 3.1e-11 43.6 0.1 3.5e-11 43.4 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|330835376|ref|YP_004410104.1| - 6.3e-10 39.4 0.1 8e-10 39.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain DUF1338 PF07063.13 gi|330835376|ref|YP_004410104.1| - 0.11 11.7 0.0 0.32 10.2 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1338) Osmo_CC PF08946.10 gi|330835376|ref|YP_004410104.1| - 0.14 12.4 0.2 5.6 7.3 0.0 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil ArsA_HSP20 PF17886.1 gi|330835377|ref|YP_004410105.1| - 3.9e-14 51.9 0.1 6.8e-14 51.2 0.1 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|330835377|ref|YP_004410105.1| - 1.6e-11 44.3 5.1 2.7e-10 40.3 5.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|330835377|ref|YP_004410105.1| - 1.6e-05 25.8 2.5 2.7e-05 25.1 2.5 1.3 1 0 0 1 1 1 1 CS domain PIH1_CS PF18201.1 gi|330835377|ref|YP_004410105.1| - 0.0004 20.7 0.3 0.00054 20.3 0.3 1.2 1 0 0 1 1 1 1 PIH1 CS-like domain zf-ZPR1 PF03367.13 gi|330835378|ref|YP_004410106.1| - 4.2e-26 91.7 0.2 1.3e-25 90.1 0.2 1.7 1 1 0 1 1 1 1 ZPR1 zinc-finger domain Desulfoferrod_N PF06397.12 gi|330835378|ref|YP_004410106.1| - 0.0058 16.2 0.1 0.017 14.7 0.1 1.8 1 0 0 1 1 1 1 Desulfoferrodoxin, N-terminal domain Elf1 PF05129.13 gi|330835378|ref|YP_004410106.1| - 0.0076 16.3 0.1 0.017 15.2 0.1 1.5 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|330835378|ref|YP_004410106.1| - 0.031 14.2 0.1 0.072 13.1 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|330835378|ref|YP_004410106.1| - 0.16 12.0 1.2 1.1 9.3 0.0 2.4 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|330835378|ref|YP_004410106.1| - 0.28 10.7 0.2 0.28 10.7 0.2 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding PADR1 PF08063.12 gi|330835378|ref|YP_004410106.1| - 4.7 7.1 7.0 23 4.9 3.6 2.7 2 1 0 2 2 2 0 PADR1 (NUC008) domain GTP_EFTU PF00009.27 gi|330835379|ref|YP_004410107.1| - 3.4e-23 82.2 0.0 6.2e-23 81.3 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|330835379|ref|YP_004410107.1| - 6.1e-07 29.7 0.1 3.6e-06 27.3 0.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|330835379|ref|YP_004410107.1| - 1.1e-05 25.7 0.2 3.1e-05 24.3 0.2 1.8 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|330835379|ref|YP_004410107.1| - 3.4e-05 23.9 0.0 0.00011 22.3 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|330835379|ref|YP_004410107.1| - 0.0011 18.8 0.9 0.91 9.3 0.0 3.3 2 1 1 3 3 3 1 Ethanolamine utilisation - propanediol utilisation COXG PF06240.13 gi|330835380|ref|YP_004410108.1| - 2.8e-11 43.3 0.0 3.4e-11 43.1 0.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Yop-YscD_ppl PF16693.5 gi|330835380|ref|YP_004410108.1| - 0.09 12.2 0.0 0.11 12.0 0.0 1.1 1 0 0 1 1 1 0 Inner membrane component of T3SS, periplasmic domain COXG PF06240.13 gi|330835381|ref|YP_004410109.1| - 4.8e-41 139.8 0.3 5.4e-41 139.6 0.3 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.8 gi|330835381|ref|YP_004410109.1| - 0.00026 21.2 0.1 0.00039 20.7 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) Polyketide_cyc2 PF10604.9 gi|330835381|ref|YP_004410109.1| - 0.0034 17.7 0.0 0.0041 17.4 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport UQ_con PF00179.26 gi|330835381|ref|YP_004410109.1| - 0.018 14.7 0.0 0.045 13.4 0.0 1.5 1 1 0 1 1 1 0 Ubiquitin-conjugating enzyme MoaE PF02391.17 gi|330835382|ref|YP_004410110.1| - 3.4e-20 72.4 0.0 5.3e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|330835382|ref|YP_004410110.1| - 1.2e-10 41.9 0.1 3.2e-10 40.5 0.1 1.8 1 0 0 1 1 1 1 ThiS family Prot_ATP_ID_OB PF16450.5 gi|330835382|ref|YP_004410110.1| - 0.022 14.7 0.1 0.21 11.6 0.1 2.5 3 0 0 3 3 3 0 Proteasomal ATPase OB C-terminal domain Phos_pyr_kin PF08543.12 gi|330835383|ref|YP_004410111.1| - 2.2e-70 236.8 0.8 3e-70 236.4 0.8 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|330835383|ref|YP_004410111.1| - 1.5e-46 158.0 0.0 5.5e-46 156.2 0.0 1.9 2 1 1 3 3 3 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|330835383|ref|YP_004410111.1| - 2.7e-06 26.9 0.0 4.2e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|330835383|ref|YP_004410111.1| - 6.3e-06 25.8 1.0 9.4e-06 25.3 1.0 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HD_3 PF13023.6 gi|330835384|ref|YP_004410112.1| - 1.2e-15 57.8 0.0 6.9e-15 55.3 0.0 1.8 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|330835384|ref|YP_004410112.1| - 5.6e-13 49.0 0.0 1e-12 48.2 0.0 1.4 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|330835384|ref|YP_004410112.1| - 1.3e-06 28.6 0.1 2.9e-06 27.5 0.1 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|330835384|ref|YP_004410112.1| - 0.00097 18.7 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 HDOD domain Thioesterase PF00975.20 gi|330835384|ref|YP_004410112.1| - 0.021 14.9 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 Thioesterase domain DUF2802 PF10975.8 gi|330835384|ref|YP_004410112.1| - 0.14 12.3 0.1 0.55 10.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Pyrophosphatase PF00719.19 gi|330835385|ref|YP_004410113.1| - 1.3e-56 190.8 0.4 1.5e-56 190.6 0.4 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase InPase PF18823.1 gi|330835385|ref|YP_004410113.1| - 0.039 13.6 0.0 0.048 13.4 0.0 1.5 1 1 0 1 1 1 0 Inorganic Pyrophosphatase Glyco_trans_2_3 PF13632.6 gi|330835386|ref|YP_004410114.1| - 9.5e-28 97.5 0.3 9.5e-28 97.5 0.3 1.6 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|330835386|ref|YP_004410114.1| - 1.6e-23 83.8 0.0 2.1e-23 83.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|330835386|ref|YP_004410114.1| - 3.7e-17 62.3 0.0 7.3e-17 61.4 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glycos_transf_2 PF00535.26 gi|330835386|ref|YP_004410114.1| - 7.4e-17 61.7 0.0 1.1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|330835386|ref|YP_004410114.1| - 5.4e-05 22.8 0.1 0.00015 21.4 0.1 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|330835386|ref|YP_004410114.1| - 6.1e-05 21.7 0.2 9.1e-05 21.2 0.2 1.1 1 0 0 1 1 1 1 Cellulose synthase T2SSE PF00437.20 gi|330835387|ref|YP_004410115.1| - 1e-42 146.1 0.0 2.1e-42 145.1 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_14 PF13173.6 gi|330835387|ref|YP_004410115.1| - 0.0049 16.9 0.1 0.31 11.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|330835387|ref|YP_004410115.1| - 0.022 14.4 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF87 PF01935.17 gi|330835387|ref|YP_004410115.1| - 0.035 14.2 0.1 0.096 12.8 0.1 1.8 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_29 PF13555.6 gi|330835387|ref|YP_004410115.1| - 0.076 12.8 0.1 0.54 10.0 0.1 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain cobW PF02492.19 gi|330835387|ref|YP_004410115.1| - 0.086 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|330835387|ref|YP_004410115.1| - 0.099 13.0 0.0 0.22 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.18 gi|330835387|ref|YP_004410115.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|330835387|ref|YP_004410115.1| - 0.12 12.6 0.0 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|330835387|ref|YP_004410115.1| - 0.14 12.7 0.0 0.39 11.2 0.0 1.7 1 0 0 1 1 1 0 ABC transporter T2SSF PF00482.23 gi|330835388|ref|YP_004410116.1| - 1.3e-17 63.9 1.2 3.3e-09 36.8 0.1 4.7 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F TAF PF02969.17 gi|330835388|ref|YP_004410116.1| - 0.023 14.9 0.1 0.047 13.9 0.1 1.5 1 0 0 1 1 1 0 TATA box binding protein associated factor (TAF) PadR PF03551.14 gi|330835389|ref|YP_004410117.1| - 9.8e-15 54.3 0.0 1.5e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|330835389|ref|YP_004410117.1| - 0.0013 18.5 0.0 0.0029 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Stork_head PF10264.9 gi|330835389|ref|YP_004410117.1| - 0.0016 18.5 0.0 0.0027 17.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix Storkhead-box1 domain DUF4364 PF14277.6 gi|330835389|ref|YP_004410117.1| - 0.0016 18.2 0.0 0.0027 17.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) RTP PF02334.16 gi|330835389|ref|YP_004410117.1| - 0.0045 17.6 0.4 0.011 16.4 0.1 1.8 2 1 0 2 2 2 1 Replication terminator protein TrmB PF01978.19 gi|330835389|ref|YP_004410117.1| - 0.015 15.1 0.3 0.036 13.9 0.3 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ThiP_synth PF10120.9 gi|330835390|ref|YP_004410118.1| - 1.8e-48 164.3 0.0 2.6e-48 163.8 0.0 1.2 1 1 0 1 1 1 1 Thiamine-phosphate synthase DUF1634 PF07843.11 gi|330835391|ref|YP_004410119.1| - 5.9e-26 90.5 12.4 6.8e-26 90.3 12.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) TauE PF01925.19 gi|330835392|ref|YP_004410120.1| - 1.5e-37 129.5 23.0 1.7e-37 129.3 23.0 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE MazE_antitoxin PF04014.18 gi|330835395|ref|YP_004410123.1| - 2e-08 34.0 0.4 7.6e-07 28.9 0.1 2.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin Glu-tRNAGln PF02686.15 gi|330835395|ref|YP_004410123.1| - 0.0035 17.6 0.5 0.16 12.3 0.0 2.9 2 1 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit FAD_binding_4 PF01565.23 gi|330835396|ref|YP_004410124.1| - 8e-25 87.2 0.0 1.5e-24 86.3 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|330835397|ref|YP_004410125.1| - 2.7e-56 191.0 0.0 3.4e-56 190.7 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|330835397|ref|YP_004410125.1| - 2.4e-31 108.3 0.0 4.1e-31 107.6 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|330835397|ref|YP_004410125.1| - 0.14 12.3 0.0 0.29 11.3 0.0 1.5 1 0 0 1 1 1 0 Berberine and berberine like CCG PF02754.16 gi|330835398|ref|YP_004410126.1| - 7.2e-18 64.6 0.1 3.2e-08 33.7 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_7 PF12838.7 gi|330835398|ref|YP_004410126.1| - 7.8e-11 42.4 7.0 2.2e-10 40.9 7.0 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835398|ref|YP_004410126.1| - 1.9e-10 41.0 5.7 4.8e-10 39.7 5.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330835398|ref|YP_004410126.1| - 4.1e-10 40.0 4.9 1e-09 38.8 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835398|ref|YP_004410126.1| - 1.9e-07 30.6 12.1 0.00034 20.3 1.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330835398|ref|YP_004410126.1| - 2.3e-07 30.8 19.6 2.9e-06 27.3 10.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835398|ref|YP_004410126.1| - 5.3e-07 29.7 5.9 1.5e-06 28.3 5.9 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835398|ref|YP_004410126.1| - 4e-05 24.5 4.6 0.047 14.6 0.4 2.5 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|330835398|ref|YP_004410126.1| - 4.9e-05 23.2 12.5 0.0023 17.9 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330835398|ref|YP_004410126.1| - 0.00011 22.4 12.9 0.022 15.2 2.4 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330835398|ref|YP_004410126.1| - 0.00095 19.1 13.4 0.0033 17.4 2.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835398|ref|YP_004410126.1| - 0.0091 16.9 17.7 0.63 11.1 4.9 2.8 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835398|ref|YP_004410126.1| - 0.011 15.8 11.1 0.071 13.2 11.1 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330835398|ref|YP_004410126.1| - 0.23 11.7 7.6 1.1 9.4 1.2 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330835398|ref|YP_004410126.1| - 0.49 11.0 7.2 8.2 7.1 0.6 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330835398|ref|YP_004410126.1| - 0.53 11.1 4.2 3.5 8.4 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S single cluster domain AAA_31 PF13614.6 gi|330835400|ref|YP_004410128.1| - 2e-27 96.2 0.4 2.8e-26 92.5 0.4 2.0 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|330835400|ref|YP_004410128.1| - 3.7e-14 52.8 2.0 9.1e-14 51.5 2.0 1.6 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|330835400|ref|YP_004410128.1| - 1.5e-13 50.9 0.0 5.2e-13 49.2 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|330835400|ref|YP_004410128.1| - 1.6e-09 37.5 0.1 2.8e-09 36.7 0.1 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|330835400|ref|YP_004410128.1| - 5.4e-07 29.1 0.7 0.0014 17.8 0.1 2.2 1 1 0 2 2 2 2 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330835400|ref|YP_004410128.1| - 0.0018 17.8 0.0 0.45 9.9 0.0 2.1 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ RuvB_N PF05496.12 gi|330835400|ref|YP_004410128.1| - 0.02 14.6 0.9 0.12 12.1 0.1 2.0 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_24 PF13479.6 gi|330835400|ref|YP_004410128.1| - 0.06 13.1 0.0 0.14 11.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|330835400|ref|YP_004410128.1| - 0.18 11.1 0.0 0.36 10.1 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein DUF1664 PF07889.12 gi|330835401|ref|YP_004410129.1| - 0.0013 18.7 1.2 0.87 9.6 0.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) DUF3552 PF12072.8 gi|330835401|ref|YP_004410129.1| - 0.0051 16.2 0.2 3.3 7.1 0.1 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) N_NLPC_P60 PF12912.7 gi|330835401|ref|YP_004410129.1| - 0.28 11.6 8.9 2.4e+03 -1.1 8.9 4.1 1 1 0 1 1 1 0 NLPC_P60 stabilising domain, N term Herpes_LMP1 PF05297.11 gi|330835401|ref|YP_004410129.1| - 0.47 9.6 30.2 0.18 11.0 6.9 2.8 1 1 2 3 3 3 0 Herpesvirus latent membrane protein 1 (LMP1) DUF5610 PF18433.1 gi|330835401|ref|YP_004410129.1| - 1.4 9.5 8.6 51 4.4 0.5 4.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5610) Pyr_redox_2 PF07992.14 gi|330835402|ref|YP_004410130.1| - 4.1e-17 62.3 0.0 5.6e-17 61.9 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835402|ref|YP_004410130.1| - 8.1e-06 26.3 0.7 0.00032 21.2 0.3 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|330835402|ref|YP_004410130.1| - 1.3e-05 24.7 0.3 0.0017 17.6 0.6 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|330835402|ref|YP_004410130.1| - 0.00021 20.5 0.1 0.00029 20.1 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|330835402|ref|YP_004410130.1| - 0.0014 18.8 0.3 0.0034 17.6 0.3 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|330835402|ref|YP_004410130.1| - 0.01 14.6 0.4 0.019 13.7 0.4 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|330835402|ref|YP_004410130.1| - 0.012 14.7 0.0 0.022 13.8 0.1 1.5 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|330835402|ref|YP_004410130.1| - 0.015 14.6 0.1 0.03 13.6 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|330835402|ref|YP_004410130.1| - 0.026 13.6 0.1 0.04 13.0 0.1 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|330835402|ref|YP_004410130.1| - 0.033 13.6 1.0 0.045 13.1 1.0 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|330835402|ref|YP_004410130.1| - 0.052 14.0 0.2 0.11 12.9 0.2 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding Thi4 PF01946.17 gi|330835402|ref|YP_004410130.1| - 0.082 12.1 0.8 0.22 10.8 0.3 1.8 2 0 0 2 2 2 0 Thi4 family Trp_halogenase PF04820.14 gi|330835402|ref|YP_004410130.1| - 0.09 11.6 1.7 0.33 9.8 1.1 1.9 1 1 1 2 2 2 0 Tryptophan halogenase Amino_oxidase PF01593.24 gi|330835402|ref|YP_004410130.1| - 0.15 11.3 0.0 0.29 10.3 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DAO PF01266.24 gi|330835402|ref|YP_004410130.1| - 0.18 11.3 0.7 0.89 9.1 0.8 1.9 2 0 0 2 2 2 0 FAD dependent oxidoreductase ATG7_N PF16420.5 gi|330835403|ref|YP_004410131.1| - 0.048 13.3 0.0 0.052 13.2 0.0 1.1 1 0 0 1 1 1 0 Ubiquitin-like modifier-activating enzyme ATG7 N-terminus DUF1614 PF07758.11 gi|330835404|ref|YP_004410132.1| - 7.7e-46 156.2 12.5 7.7e-46 156.2 12.5 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) DUF3211 PF11485.8 gi|330835406|ref|YP_004410134.1| - 3.6e-25 88.8 0.0 3.9e-25 88.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) QueC PF06508.13 gi|330835407|ref|YP_004410135.1| - 3.8e-59 199.7 0.0 5.8e-59 199.1 0.0 1.3 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|330835407|ref|YP_004410135.1| - 1.3e-14 54.2 0.0 2.4e-14 53.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|330835407|ref|YP_004410135.1| - 7.5e-09 35.9 0.0 1.5e-08 34.9 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|330835407|ref|YP_004410135.1| - 1.1e-08 35.0 0.1 5.1e-08 32.7 0.1 2.2 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|330835407|ref|YP_004410135.1| - 0.00016 20.6 0.0 0.00039 19.3 0.0 1.6 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|330835407|ref|YP_004410135.1| - 0.038 13.8 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Asn_synthase PF00733.21 gi|330835407|ref|YP_004410135.1| - 0.11 12.2 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase DEAD PF00270.29 gi|330835408|ref|YP_004410136.1| - 3.2e-23 82.4 0.0 5.7e-21 75.1 0.0 2.2 2 0 0 2 2 2 2 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|330835408|ref|YP_004410136.1| - 5.8e-21 74.9 0.0 1.5e-17 63.9 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|330835408|ref|YP_004410136.1| - 2.4e-11 44.2 0.2 9.6e-11 42.3 0.1 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|330835408|ref|YP_004410136.1| - 2.4e-05 24.4 0.0 8.5e-05 22.6 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|330835408|ref|YP_004410136.1| - 0.0022 17.4 0.0 0.0036 16.6 0.0 1.3 1 0 0 1 1 1 1 SecA DEAD-like domain Fer4_10 PF13237.6 gi|330835410|ref|YP_004410138.1| - 3.4e-08 33.5 5.6 0.0011 19.0 0.8 2.6 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835410|ref|YP_004410138.1| - 8.1e-08 32.6 4.3 1.9e-07 31.4 4.3 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835410|ref|YP_004410138.1| - 5.6e-07 30.0 6.3 1.6e-06 28.6 6.3 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835410|ref|YP_004410138.1| - 9.6e-07 28.4 17.9 0.0005 19.8 2.7 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330835410|ref|YP_004410138.1| - 2.3e-06 27.6 8.0 2.2e-05 24.5 8.5 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835410|ref|YP_004410138.1| - 4.6e-06 27.5 5.4 0.02 15.8 0.4 2.8 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|330835410|ref|YP_004410138.1| - 5.8e-06 26.8 7.2 2.8e-05 24.6 7.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835410|ref|YP_004410138.1| - 3.4e-05 24.0 7.9 0.017 15.6 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|330835410|ref|YP_004410138.1| - 5.1e-05 23.4 6.8 0.051 13.8 0.7 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835410|ref|YP_004410138.1| - 7.6e-05 22.6 13.5 0.026 14.6 4.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330835410|ref|YP_004410138.1| - 0.0025 18.6 3.2 1.1 10.1 0.2 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835410|ref|YP_004410138.1| - 0.0028 17.6 13.3 0.014 15.4 2.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835410|ref|YP_004410138.1| - 0.012 15.7 10.6 0.05 13.7 10.6 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330835410|ref|YP_004410138.1| - 0.013 16.0 6.1 0.18 12.4 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|330835410|ref|YP_004410138.1| - 0.029 15.1 2.6 0.48 11.2 0.3 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain DUF2481 PF10654.9 gi|330835410|ref|YP_004410138.1| - 0.07 13.1 0.1 0.16 12.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) Fer4_3 PF12798.7 gi|330835410|ref|YP_004410138.1| - 0.12 13.4 24.4 0.34 11.9 5.9 2.7 3 0 0 3 3 2 0 4Fe-4S binding domain MoCF_biosynth PF00994.24 gi|330835411|ref|YP_004410139.1| - 1.3e-29 102.7 0.1 1.6e-29 102.4 0.1 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain WHIM1 PF15612.6 gi|330835411|ref|YP_004410139.1| - 0.016 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 WSTF, HB1, Itc1p, MBD9 motif 1 LpxD PF04613.14 gi|330835411|ref|YP_004410139.1| - 0.07 12.9 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DAO PF01266.24 gi|330835414|ref|YP_004410142.1| - 5.1e-10 39.5 1.0 6.3e-06 26.0 0.0 2.1 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|330835414|ref|YP_004410142.1| - 0.0015 17.8 0.0 0.0036 16.6 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835414|ref|YP_004410142.1| - 0.0016 19.0 0.0 0.0045 17.5 0.0 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330835414|ref|YP_004410142.1| - 0.0065 16.7 0.1 0.013 15.7 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|330835414|ref|YP_004410142.1| - 0.012 15.9 0.1 0.029 14.6 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|330835414|ref|YP_004410142.1| - 0.078 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|330835414|ref|YP_004410142.1| - 0.19 11.3 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DUF3211 PF11485.8 gi|330835416|ref|YP_004410144.1| - 4.2e-25 88.6 0.4 4.5e-25 88.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) McrBC PF10117.9 gi|330835419|ref|YP_004410147.1| - 0.02 14.0 1.1 0.032 13.4 0.1 1.7 1 1 1 2 2 2 0 McrBC 5-methylcytosine restriction system component DUF4143 PF13635.6 gi|330835419|ref|YP_004410147.1| - 0.049 13.8 0.0 0.065 13.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) ATP-grasp PF02222.22 gi|330835420|ref|YP_004410148.1| - 2.6e-42 144.3 0.0 4.2e-42 143.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330835420|ref|YP_004410148.1| - 3.1e-09 36.6 0.0 5.4e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|330835420|ref|YP_004410148.1| - 2.3e-07 30.5 0.0 4.5e-07 29.6 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|330835420|ref|YP_004410148.1| - 5.4e-06 26.5 0.0 9.3e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|330835420|ref|YP_004410148.1| - 8.1e-05 22.5 0.1 0.00026 20.8 0.0 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LAL_C2 PF18603.1 gi|330835420|ref|YP_004410148.1| - 0.0038 17.3 0.0 0.014 15.6 0.0 2.0 1 0 0 1 1 1 1 L-amino acid ligase C-terminal domain 2 PurK_C PF17769.1 gi|330835420|ref|YP_004410148.1| - 0.0085 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Epimerase PF01370.21 gi|330835420|ref|YP_004410148.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family 2-Hacid_dh_C PF02826.19 gi|330835420|ref|YP_004410148.1| - 0.016 14.6 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|330835420|ref|YP_004410148.1| - 0.025 14.5 0.1 0.04 13.8 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 gi|330835420|ref|YP_004410148.1| - 0.029 13.8 0.2 0.11 12.0 0.0 2.1 3 0 0 3 3 3 0 ATP-grasp domain RmlD_sub_bind PF04321.17 gi|330835420|ref|YP_004410148.1| - 0.068 12.3 0.1 0.099 11.7 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain Hist_deacetyl PF00850.19 gi|330835421|ref|YP_004410149.1| - 8.4e-72 242.2 0.0 1.3e-71 241.6 0.0 1.3 1 0 0 1 1 1 1 Histone deacetylase domain CBS PF00571.28 gi|330835422|ref|YP_004410150.1| - 3.7e-45 152.2 4.3 1.4e-12 47.9 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|330835422|ref|YP_004410150.1| - 2.8e-07 31.2 2.4 4.3e-07 30.6 0.3 2.3 3 0 0 3 3 3 1 Sigma 54 modulation protein / S30EA ribosomal protein H_kinase_N PF12282.8 gi|330835422|ref|YP_004410150.1| - 0.036 14.0 1.0 7.2 6.6 0.0 3.0 2 1 1 3 3 3 0 Signal transduction histidine kinase GAF PF01590.26 gi|330835422|ref|YP_004410150.1| - 0.13 12.9 0.0 2.4 8.8 0.0 2.5 2 0 0 2 2 2 0 GAF domain CN_hydrolase PF00795.22 gi|330835423|ref|YP_004410151.1| - 8.5e-19 67.9 0.0 2.1e-18 66.6 0.0 1.6 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase OKR_DC_1_C PF03711.15 gi|330835423|ref|YP_004410151.1| - 0.014 15.7 0.0 0.023 15.0 0.0 1.3 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, C-terminal domain URO-D PF01208.17 gi|330835423|ref|YP_004410151.1| - 0.041 13.0 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Uroporphyrinogen decarboxylase (URO-D) Ald_Xan_dh_C2 PF02738.18 gi|330835426|ref|YP_004410154.1| - 5e-95 319.0 0.0 6.7e-95 318.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330835426|ref|YP_004410154.1| - 1.4e-20 73.7 0.0 2.1e-20 73.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PaREP1 PF05942.11 gi|330835427|ref|YP_004410155.1| - 1.2e-09 38.1 0.1 1.9e-09 37.4 0.1 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family POR_N PF01855.19 gi|330835428|ref|YP_004410156.1| - 1e-59 202.1 0.0 1.5e-59 201.5 0.0 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|330835428|ref|YP_004410156.1| - 6.4e-34 117.6 1.2 1.5e-33 116.4 0.7 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|330835428|ref|YP_004410156.1| - 4.5e-11 42.9 0.0 1e-10 41.8 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|330835428|ref|YP_004410156.1| - 1.2e-07 31.6 0.0 3.9e-07 30.0 0.0 1.8 2 0 0 2 2 2 1 Transketolase, C-terminal domain DUF2164 PF09932.9 gi|330835428|ref|YP_004410156.1| - 7.9e-05 22.6 0.0 0.0026 17.8 0.0 2.6 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2164) TPP_enzyme_N PF02776.18 gi|330835428|ref|YP_004410156.1| - 0.00024 20.8 0.1 0.00059 19.5 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|330835429|ref|YP_004410157.1| - 4.1e-29 101.3 0.0 6e-29 100.8 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|330835429|ref|YP_004410157.1| - 1e-24 86.4 0.1 1.8e-24 85.7 0.1 1.4 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal VIT1 PF01988.19 gi|330835431|ref|YP_004410159.1| - 3.3e-25 89.2 11.1 1e-14 54.9 0.1 2.4 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|330835431|ref|YP_004410159.1| - 3e-09 37.4 0.6 5e-09 36.7 0.6 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin_2 PF13668.6 gi|330835431|ref|YP_004410159.1| - 0.0073 16.5 0.1 2.7 8.2 0.0 2.3 2 0 0 2 2 2 2 Ferritin-like domain COQ7 PF03232.13 gi|330835431|ref|YP_004410159.1| - 0.01 15.6 0.1 0.023 14.5 0.1 1.7 1 1 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 DUF2397 PF09660.10 gi|330835431|ref|YP_004410159.1| - 0.04 12.8 0.2 0.04 12.8 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2397) DUF4064 PF13273.6 gi|330835431|ref|YP_004410159.1| - 0.061 13.6 2.6 0.14 12.5 0.8 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 gi|330835432|ref|YP_004410160.1| - 4.1e-28 98.6 0.0 8.5e-28 97.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835432|ref|YP_004410160.1| - 1.5e-08 34.8 0.3 5.9e-05 23.0 0.3 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330835432|ref|YP_004410160.1| - 5.3e-05 23.8 1.5 5.3e-05 23.8 1.5 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|330835432|ref|YP_004410160.1| - 9.3e-05 22.1 0.1 0.00018 21.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|330835432|ref|YP_004410160.1| - 0.00049 19.9 0.3 0.0016 18.3 0.2 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|330835432|ref|YP_004410160.1| - 0.0018 18.1 0.1 0.0069 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|330835432|ref|YP_004410160.1| - 0.0029 17.9 0.3 0.014 15.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain AAA_13 PF13166.6 gi|330835432|ref|YP_004410160.1| - 0.0049 15.6 0.0 0.0069 15.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|330835432|ref|YP_004410160.1| - 0.015 16.0 0.8 0.049 14.4 0.2 2.2 3 0 0 3 3 2 0 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|330835432|ref|YP_004410160.1| - 0.031 13.7 0.1 0.061 12.7 0.1 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|330835432|ref|YP_004410160.1| - 0.034 14.0 0.1 0.13 12.1 0.1 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|330835432|ref|YP_004410160.1| - 0.037 13.6 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|330835432|ref|YP_004410160.1| - 0.038 13.9 1.6 0.15 11.9 0.2 2.3 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|330835432|ref|YP_004410160.1| - 0.041 14.3 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|330835432|ref|YP_004410160.1| - 0.044 13.6 0.3 0.097 12.5 0.0 1.6 2 0 0 2 2 2 0 MukB N-terminal AAA PF00004.29 gi|330835432|ref|YP_004410160.1| - 0.055 13.9 1.1 0.26 11.7 0.4 2.5 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|330835432|ref|YP_004410160.1| - 0.065 12.8 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Mg_chelatase PF01078.21 gi|330835432|ref|YP_004410160.1| - 0.073 12.4 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|330835432|ref|YP_004410160.1| - 0.075 12.7 0.9 0.54 10.0 0.1 2.2 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|330835432|ref|YP_004410160.1| - 0.078 12.9 3.2 2.6 8.0 0.1 3.0 3 0 0 3 3 3 0 NTPase MMR_HSR1 PF01926.23 gi|330835432|ref|YP_004410160.1| - 0.089 12.9 0.2 0.62 10.2 0.2 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase NACHT PF05729.12 gi|330835432|ref|YP_004410160.1| - 0.15 12.0 0.0 0.46 10.4 0.0 1.9 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|330835432|ref|YP_004410160.1| - 0.19 12.3 0.7 1.1 9.9 0.7 2.4 1 1 0 1 1 1 0 AAA domain Pro_3_hydrox_C PF05373.11 gi|330835432|ref|YP_004410160.1| - 0.27 11.3 1.3 1.4 9.0 0.2 2.4 2 1 1 3 3 3 0 L-proline 3-hydroxylase, C-terminal ABC2_membrane_2 PF12679.7 gi|330835433|ref|YP_004410161.1| - 2.7e-09 36.7 25.1 4.2e-09 36.1 25.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|330835433|ref|YP_004410161.1| - 0.0001 22.3 15.0 0.00033 20.7 15.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|330835433|ref|YP_004410161.1| - 0.0038 16.4 24.9 0.0055 15.9 24.9 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein Tegument_dsDNA PF12818.7 gi|330835433|ref|YP_004410161.1| - 0.028 13.6 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 dsDNA viral tegument protein ATP1G1_PLM_MAT8 PF02038.16 gi|330835433|ref|YP_004410161.1| - 0.12 11.9 2.1 6.8 6.2 0.0 3.5 3 0 0 3 3 3 0 ATP1G1/PLM/MAT8 family CbiA PF01656.23 gi|330835434|ref|YP_004410162.1| - 5e-10 39.5 0.0 1.3e-09 38.2 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|330835434|ref|YP_004410162.1| - 4.7e-09 36.4 3.5 8.5e-09 35.6 1.9 2.1 2 1 0 2 2 2 1 AAA domain ParA PF10609.9 gi|330835434|ref|YP_004410162.1| - 8.6e-08 31.9 0.6 1.2e-07 31.5 0.6 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|330835434|ref|YP_004410162.1| - 1.2e-06 28.0 0.7 3e-06 26.7 0.4 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330835434|ref|YP_004410162.1| - 5.3e-05 22.8 0.0 8.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|330835434|ref|YP_004410162.1| - 0.0003 20.1 0.5 0.00085 18.7 0.1 1.8 2 0 0 2 2 2 1 ATPase MipZ CLP1_P PF16575.5 gi|330835434|ref|YP_004410162.1| - 0.0044 16.8 0.2 0.015 15.1 0.1 1.8 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 gi|330835434|ref|YP_004410162.1| - 0.0073 15.8 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|330835434|ref|YP_004410162.1| - 0.011 15.3 0.2 0.034 13.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|330835434|ref|YP_004410162.1| - 0.026 14.6 1.0 3.6 7.6 1.0 2.3 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|330835434|ref|YP_004410162.1| - 0.031 14.0 0.3 0.059 13.1 0.1 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein APS_kinase PF01583.20 gi|330835434|ref|YP_004410162.1| - 0.039 13.8 0.1 0.069 13.0 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF87 PF01935.17 gi|330835434|ref|YP_004410162.1| - 0.039 14.0 1.1 0.12 12.4 0.2 1.9 1 1 0 2 2 2 0 Helicase HerA, central domain Ldh_1_N PF00056.23 gi|330835434|ref|YP_004410162.1| - 0.095 12.8 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Zeta_toxin PF06414.12 gi|330835434|ref|YP_004410162.1| - 0.15 11.3 0.2 0.34 10.1 0.2 1.5 1 0 0 1 1 1 0 Zeta toxin SRP54 PF00448.22 gi|330835434|ref|YP_004410162.1| - 0.21 11.2 0.1 1.5 8.4 0.3 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AurF PF11583.8 gi|330835435|ref|YP_004410163.1| - 2.9e-09 36.6 1.7 3.6e-08 33.0 0.0 2.1 2 0 0 2 2 2 1 P-aminobenzoate N-oxygenase AurF Ribonuc_red_sm PF00268.21 gi|330835435|ref|YP_004410163.1| - 3e-05 23.6 2.7 6.1e-05 22.6 2.7 1.4 1 1 0 1 1 1 1 Ribonucleotide reductase, small chain Rubrerythrin PF02915.17 gi|330835435|ref|YP_004410163.1| - 0.00044 20.7 0.0 0.0029 18.0 0.0 2.3 2 0 0 2 2 2 1 Rubrerythrin Ferritin_2 PF13668.6 gi|330835435|ref|YP_004410163.1| - 0.015 15.5 0.0 2.8 8.1 0.0 2.2 2 0 0 2 2 2 0 Ferritin-like domain CbiA PF01656.23 gi|330835436|ref|YP_004410164.1| - 2.4e-09 37.3 0.0 3.5e-09 36.8 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330835436|ref|YP_004410164.1| - 8.1e-09 35.3 0.3 1.5e-07 31.1 0.3 2.1 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|330835436|ref|YP_004410164.1| - 3.4e-06 27.1 0.1 1.1e-05 25.4 0.0 1.7 1 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|330835436|ref|YP_004410164.1| - 0.00045 19.5 0.0 0.012 14.8 0.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase CLP1_P PF16575.5 gi|330835436|ref|YP_004410164.1| - 0.039 13.8 0.2 0.71 9.6 0.1 2.1 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop RNA_helicase PF00910.22 gi|330835436|ref|YP_004410164.1| - 0.072 13.5 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 RNA helicase CBP_BcsQ PF06564.12 gi|330835436|ref|YP_004410164.1| - 0.077 12.5 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_18 PF13238.6 gi|330835436|ref|YP_004410164.1| - 0.079 13.5 0.1 0.43 11.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain HflK_N PF12221.8 gi|330835436|ref|YP_004410164.1| - 0.24 11.4 0.3 0.71 9.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial membrane protein N terminal Lactamase_B PF00753.27 gi|330835437|ref|YP_004410165.1| - 6.5e-12 45.9 0.0 1.1e-11 45.1 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF4817 PF16087.5 gi|330835437|ref|YP_004410165.1| - 0.18 11.6 0.2 0.44 10.4 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain (DUF4817) Radical_SAM PF04055.21 gi|330835440|ref|YP_004410168.1| - 8.1e-17 62.1 0.4 5e-16 59.5 0.0 2.4 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330835440|ref|YP_004410168.1| - 4.6e-10 39.9 0.0 9.7e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330835440|ref|YP_004410168.1| - 9.5e-05 22.5 0.0 0.00023 21.3 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|330835440|ref|YP_004410168.1| - 0.028 14.9 0.1 0.1 13.1 0.1 2.0 1 0 0 1 1 1 0 Iron-sulfur cluster-binding domain Peptidase_U32 PF01136.19 gi|330835441|ref|YP_004410169.1| - 8.1e-13 48.1 0.0 5.4e-09 35.5 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 Shikimate_dh_N PF08501.11 gi|330835441|ref|YP_004410169.1| - 0.1 12.9 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 Shikimate dehydrogenase substrate binding domain Lactamase_B PF00753.27 gi|330835442|ref|YP_004410170.1| - 6.3e-25 88.3 0.4 9.2e-25 87.8 0.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_5 PF14597.6 gi|330835442|ref|YP_004410170.1| - 0.0017 17.8 0.0 0.085 12.3 0.0 2.1 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330835442|ref|YP_004410170.1| - 0.0022 17.6 0.0 0.0028 17.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|330835442|ref|YP_004410170.1| - 0.011 15.2 0.0 0.017 14.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain HEPN_AbiV PF18728.1 gi|330835442|ref|YP_004410170.1| - 0.026 14.7 0.1 0.035 14.3 0.1 1.2 1 0 0 1 1 1 0 AbiV MerR-DNA-bind PF09278.11 gi|330835442|ref|YP_004410170.1| - 0.12 12.9 0.0 0.49 11.0 0.0 1.9 2 0 0 2 2 2 0 MerR, DNA binding Radical_SAM PF04055.21 gi|330835443|ref|YP_004410171.1| - 9.7e-17 61.8 0.0 1.6e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily SPASM PF13186.6 gi|330835443|ref|YP_004410171.1| - 3.6e-07 30.6 0.6 8.2e-07 29.4 0.6 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|330835443|ref|YP_004410171.1| - 2.5e-05 24.6 0.0 5.7e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF1906 PF08924.11 gi|330835443|ref|YP_004410171.1| - 0.0068 16.6 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) AAA_assoc PF14363.6 gi|330835443|ref|YP_004410171.1| - 0.042 14.2 0.0 0.095 13.1 0.0 1.6 1 0 0 1 1 1 0 Domain associated at C-terminal with AAA Fer4_14 PF13394.6 gi|330835443|ref|YP_004410171.1| - 0.076 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain TxDE PF18711.1 gi|330835443|ref|YP_004410171.1| - 0.18 12.0 0.1 8.7 6.6 0.0 2.6 2 0 0 2 2 2 0 Toxoflavin-degrading enzyme Radical_SAM PF04055.21 gi|330835444|ref|YP_004410172.1| - 2.4e-24 86.6 0.0 6.3e-24 85.2 0.0 1.7 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|330835444|ref|YP_004410172.1| - 4.1e-09 36.8 0.0 8.6e-09 35.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|330835444|ref|YP_004410172.1| - 4.2e-07 30.1 0.0 9.8e-07 28.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain FMO-like PF00743.19 gi|330835444|ref|YP_004410172.1| - 0.15 10.5 0.0 0.2 10.0 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like TPP_enzyme_C PF02775.21 gi|330835445|ref|YP_004410173.1| - 9.6e-21 74.2 0.0 1.4e-20 73.6 0.0 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|330835445|ref|YP_004410173.1| - 0.0031 16.8 0.0 0.0044 16.3 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|330835445|ref|YP_004410173.1| - 0.016 14.2 0.1 0.024 13.6 0.1 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component Adeno_PX PF05829.12 gi|330835445|ref|YP_004410173.1| - 0.095 12.6 2.0 0.22 11.4 2.0 1.5 1 0 0 1 1 1 0 Adenovirus late L2 mu core protein (Protein X) POR_N PF01855.19 gi|330835446|ref|YP_004410174.1| - 4.1e-71 239.4 0.7 5.3e-71 239.0 0.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|330835446|ref|YP_004410174.1| - 5.5e-32 110.1 0.4 1.2e-31 109.0 0.4 1.6 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|330835446|ref|YP_004410174.1| - 2e-08 34.2 0.0 5.4e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF1667 PF07892.11 gi|330835446|ref|YP_004410174.1| - 0.0046 17.0 0.1 0.018 15.1 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1667) Fer4 PF00037.27 gi|330835447|ref|YP_004410175.1| - 6.4e-13 47.9 16.1 8.3e-09 34.9 6.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835447|ref|YP_004410175.1| - 6.3e-11 42.2 8.4 7.9e-11 41.9 8.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835447|ref|YP_004410175.1| - 1.8e-09 37.2 14.1 1.9e-05 24.5 5.2 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|330835447|ref|YP_004410175.1| - 5.3e-09 35.6 12.1 3.3e-05 23.7 3.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330835447|ref|YP_004410175.1| - 4.2e-08 33.2 8.2 4.2e-05 23.6 1.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835447|ref|YP_004410175.1| - 9.8e-08 32.5 10.5 2.1e-07 31.4 10.7 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835447|ref|YP_004410175.1| - 2e-07 31.8 8.4 0.00027 21.8 2.9 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|330835447|ref|YP_004410175.1| - 7.4e-07 29.2 6.1 1e-06 28.8 6.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330835447|ref|YP_004410175.1| - 5.9e-05 23.5 5.6 0.11 13.1 1.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835447|ref|YP_004410175.1| - 0.0027 18.1 15.8 0.039 14.5 4.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330835447|ref|YP_004410175.1| - 0.011 16.1 13.5 0.054 13.9 3.0 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330835447|ref|YP_004410175.1| - 0.12 13.1 12.6 0.25 12.1 5.7 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|330835447|ref|YP_004410175.1| - 0.23 12.0 10.2 0.38 11.3 2.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|330835447|ref|YP_004410175.1| - 3.1 8.9 19.3 0.41 11.7 8.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|330835447|ref|YP_004410175.1| - 8.5 7.3 12.8 0.24 12.2 2.4 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain POR PF01558.18 gi|330835448|ref|YP_004410176.1| - 4.3e-38 131.2 0.0 5e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase YjcQ PF09639.10 gi|330835449|ref|YP_004410177.1| - 0.017 15.3 0.6 0.054 13.7 0.2 2.1 2 0 0 2 2 2 0 YjcQ protein E1-E2_ATPase PF00122.20 gi|330835450|ref|YP_004410178.1| - 2e-48 164.3 3.2 2e-48 164.3 3.2 3.7 5 0 0 5 5 5 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330835450|ref|YP_004410178.1| - 3.7e-22 79.7 0.0 6.2e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|330835450|ref|YP_004410178.1| - 5.1e-12 45.3 0.0 1.6e-11 43.8 0.0 1.9 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|330835450|ref|YP_004410178.1| - 1.4e-05 25.0 0.4 8.9e-05 22.3 0.1 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|330835450|ref|YP_004410178.1| - 0.019 15.1 0.0 0.055 13.6 0.0 1.8 1 0 0 1 1 1 0 Cation transport ATPase (P-type) EB_dh PF09459.10 gi|330835451|ref|YP_004410179.1| - 2.1e-33 116.3 0.1 4e-33 115.4 0.1 1.5 1 0 0 1 1 1 1 Ethylbenzene dehydrogenase DUF3439 PF11921.8 gi|330835451|ref|YP_004410179.1| - 0.011 15.6 12.2 0.025 14.5 12.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) RIFIN PF02009.16 gi|330835451|ref|YP_004410179.1| - 0.054 13.4 0.6 0.076 12.9 0.6 1.2 1 0 0 1 1 1 0 Rifin PknH_C PF14032.6 gi|330835451|ref|YP_004410179.1| - 0.081 12.8 3.2 0.14 12.0 3.2 1.3 1 0 0 1 1 1 0 PknH-like extracellular domain SSP160 PF06933.11 gi|330835451|ref|YP_004410179.1| - 0.096 10.9 15.6 0.14 10.4 15.6 1.1 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 EssA PF10661.9 gi|330835451|ref|YP_004410179.1| - 0.17 11.7 1.5 0.26 11.1 1.5 1.3 1 0 0 1 1 1 0 WXG100 protein secretion system (Wss), protein EssA Viral_Beta_CD PF04530.12 gi|330835451|ref|YP_004410179.1| - 0.28 11.5 4.2 0.53 10.6 4.2 1.4 1 0 0 1 1 1 0 Viral Beta C/D like family TraA PF05513.11 gi|330835451|ref|YP_004410179.1| - 0.33 11.3 4.8 15 6.0 1.8 2.3 2 0 0 2 2 2 0 TraA DUF4064 PF13273.6 gi|330835451|ref|YP_004410179.1| - 0.39 11.0 6.1 0.54 10.6 2.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) Mucin PF01456.17 gi|330835451|ref|YP_004410179.1| - 6.6 6.7 23.1 13 5.7 23.1 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein Rieske PF00355.26 gi|330835453|ref|YP_004410181.1| - 3.1e-07 30.3 0.4 2.5e-06 27.3 0.4 2.2 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|330835453|ref|YP_004410181.1| - 0.051 13.4 0.0 0.051 13.4 0.0 2.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence CytB6-F_Fe-S PF08802.10 gi|330835453|ref|YP_004410181.1| - 0.065 13.3 0.1 0.2 11.7 0.1 1.8 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit DUF2117 PF09890.9 gi|330835453|ref|YP_004410181.1| - 0.077 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2117) Cytochrom_B_N_2 PF13631.6 gi|330835454|ref|YP_004410182.1| - 3.2e-56 190.0 7.0 3.2e-56 190.0 7.0 4.0 4 1 1 5 5 5 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|330835454|ref|YP_004410182.1| - 1.6e-21 77.0 14.5 1.6e-21 77.0 14.5 2.8 3 0 0 3 3 3 1 Cytochrome b/b6/petB DUF4405 PF14358.6 gi|330835454|ref|YP_004410182.1| - 0.011 16.3 2.3 0.011 16.3 2.3 4.7 5 1 0 5 5 5 0 Domain of unknown function (DUF4405) ABM PF03992.16 gi|330835455|ref|YP_004410183.1| - 7.1e-15 54.9 0.0 9.1e-15 54.5 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|330835455|ref|YP_004410183.1| - 5.7e-06 25.4 0.3 0.0053 15.7 0.0 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase Dabb PF07876.12 gi|330835455|ref|YP_004410183.1| - 0.061 13.9 0.1 0.074 13.7 0.1 1.1 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain DUF2508 PF10704.9 gi|330835455|ref|YP_004410183.1| - 0.078 13.2 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) 5-FTHF_cyc-lig PF01812.20 gi|330835456|ref|YP_004410184.1| - 3e-34 118.5 0.0 3.6e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Arginase PF00491.21 gi|330835457|ref|YP_004410185.1| - 5.4e-78 262.3 0.0 6.5e-78 262.0 0.0 1.0 1 0 0 1 1 1 1 Arginase family UPF0489 PF12640.7 gi|330835457|ref|YP_004410185.1| - 0.096 12.9 0.1 0.17 12.1 0.1 1.4 1 0 0 1 1 1 0 UPF0489 domain Peptidase_M20 PF01546.28 gi|330835458|ref|YP_004410186.1| - 1.8e-33 116.0 0.0 2.3e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|330835458|ref|YP_004410186.1| - 7e-14 51.7 0.0 1.3e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Arc_trans_TRASH PF08394.10 gi|330835459|ref|YP_004410187.1| - 1.1e-16 60.9 7.6 2.6e-16 59.6 7.6 1.7 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|330835459|ref|YP_004410187.1| - 2.9e-10 39.5 0.1 4.8e-10 38.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|330835459|ref|YP_004410187.1| - 6.1e-09 35.7 1.1 1e-08 35.0 0.1 1.9 3 0 0 3 3 1 1 HTH domain TrmB PF01978.19 gi|330835459|ref|YP_004410187.1| - 3.7e-08 33.1 0.7 7.5e-08 32.1 0.7 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|330835459|ref|YP_004410187.1| - 1.2e-07 31.4 0.1 1.7e-07 30.9 0.1 1.2 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|330835459|ref|YP_004410187.1| - 1.4e-05 24.9 0.0 2.3e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|330835459|ref|YP_004410187.1| - 3e-05 23.8 0.0 5.4e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|330835459|ref|YP_004410187.1| - 4.1e-05 23.3 0.0 7.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|330835459|ref|YP_004410187.1| - 4.3e-05 23.1 0.1 7.5e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_6 PF01418.17 gi|330835459|ref|YP_004410187.1| - 0.00019 21.3 0.3 0.0007 19.5 0.1 2.0 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family HTH_36 PF13730.6 gi|330835459|ref|YP_004410187.1| - 0.00039 20.3 0.1 0.00071 19.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|330835459|ref|YP_004410187.1| - 0.00074 19.5 0.3 0.0026 17.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|330835459|ref|YP_004410187.1| - 0.00077 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.6 gi|330835459|ref|YP_004410187.1| - 0.00091 19.2 0.0 0.0017 18.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_IclR PF09339.10 gi|330835459|ref|YP_004410187.1| - 0.001 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|330835459|ref|YP_004410187.1| - 0.0012 18.9 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|330835459|ref|YP_004410187.1| - 0.0013 18.8 0.0 0.0022 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|330835459|ref|YP_004410187.1| - 0.0018 18.0 0.2 0.0034 17.1 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Cro PF09048.10 gi|330835459|ref|YP_004410187.1| - 0.0023 17.9 0.1 0.0058 16.6 0.1 1.6 1 0 0 1 1 1 1 Cro HTH_5 PF01022.20 gi|330835459|ref|YP_004410187.1| - 0.0024 17.7 0.2 0.013 15.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|330835459|ref|YP_004410187.1| - 0.0026 18.1 0.2 0.022 15.1 0.1 2.2 2 0 0 2 2 2 1 Penicillinase repressor Rrf2 PF02082.20 gi|330835459|ref|YP_004410187.1| - 0.0037 17.6 0.1 0.0083 16.5 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator Fe_dep_repress PF01325.19 gi|330835459|ref|YP_004410187.1| - 0.0039 17.3 1.6 0.0048 17.1 0.2 1.9 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_54 PF18607.1 gi|330835459|ref|YP_004410187.1| - 0.0052 16.8 0.2 0.024 14.7 0.1 1.9 2 0 0 2 2 2 1 ParA helix turn helix domain HTH_34 PF13601.6 gi|330835459|ref|YP_004410187.1| - 0.0069 16.5 0.2 0.018 15.2 0.0 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|330835459|ref|YP_004410187.1| - 0.0077 16.7 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF977 PF06163.11 gi|330835459|ref|YP_004410187.1| - 0.0085 16.0 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) Mga PF05043.13 gi|330835459|ref|YP_004410187.1| - 0.0086 16.6 0.1 0.015 15.9 0.1 1.4 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_10 PF04967.12 gi|330835459|ref|YP_004410187.1| - 0.0091 15.8 0.2 0.023 14.5 0.2 1.7 1 1 0 1 1 1 1 HTH DNA binding domain TFIIE_alpha PF02002.17 gi|330835459|ref|YP_004410187.1| - 0.0093 15.8 0.1 0.015 15.1 0.1 1.5 1 1 0 1 1 1 1 TFIIE alpha subunit RPA_C PF08784.11 gi|330835459|ref|YP_004410187.1| - 0.0098 16.5 0.0 0.016 15.9 0.0 1.3 1 0 0 1 1 1 1 Replication protein A C terminal HTH_CodY PF08222.11 gi|330835459|ref|YP_004410187.1| - 0.013 15.0 0.1 0.036 13.6 0.1 1.7 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_Mga PF08280.11 gi|330835459|ref|YP_004410187.1| - 0.025 14.6 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|330835459|ref|YP_004410187.1| - 0.025 14.1 0.2 0.051 13.1 0.2 1.5 1 1 0 1 1 1 0 Sigma-70, region 4 Sun2_CC2 PF18580.1 gi|330835459|ref|YP_004410187.1| - 0.03 14.5 0.2 0.064 13.5 0.2 1.6 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 HTH_50 PF18024.1 gi|330835459|ref|YP_004410187.1| - 0.044 13.4 0.3 0.12 12.0 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|330835459|ref|YP_004410187.1| - 0.048 13.7 0.3 0.11 12.6 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_39 PF14090.6 gi|330835459|ref|YP_004410187.1| - 0.051 13.3 0.0 0.084 12.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|330835459|ref|YP_004410187.1| - 0.057 13.2 0.1 0.36 10.6 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|330835459|ref|YP_004410187.1| - 0.059 13.1 0.3 0.1 12.3 0.3 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_22 PF13309.6 gi|330835459|ref|YP_004410187.1| - 0.08 13.0 0.3 0.41 10.8 0.2 2.2 1 1 1 2 2 2 0 HTH domain TnsD PF15978.5 gi|330835459|ref|YP_004410187.1| - 0.089 11.8 0.1 0.097 11.6 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_1 PF00126.27 gi|330835459|ref|YP_004410187.1| - 0.099 12.6 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_9 PF08221.11 gi|330835459|ref|YP_004410187.1| - 0.1 12.7 0.1 0.2 11.8 0.1 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GerE PF00196.19 gi|330835459|ref|YP_004410187.1| - 0.12 12.0 1.6 0.18 11.4 0.3 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_Tnp_ISL3 PF13542.6 gi|330835459|ref|YP_004410187.1| - 0.15 11.5 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF2250 PF10007.9 gi|330835459|ref|YP_004410187.1| - 0.16 12.1 1.1 0.19 11.8 0.2 1.7 2 0 0 2 2 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_31 PF13560.6 gi|330835459|ref|YP_004410187.1| - 0.17 12.2 0.2 0.27 11.6 0.2 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain YHS PF04945.13 gi|330835460|ref|YP_004410188.1| - 7.1e-21 74.0 1.2 8.4e-21 73.8 1.2 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|330835460|ref|YP_004410188.1| - 8.8e-05 22.4 0.5 0.00014 21.7 0.5 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|330835460|ref|YP_004410188.1| - 0.00031 21.0 1.2 0.00043 20.5 1.2 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain FAP206 PF12018.8 gi|330835460|ref|YP_004410188.1| - 0.025 14.1 0.0 0.027 14.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function ATPase-cat_bd PF12156.8 gi|330835460|ref|YP_004410188.1| - 0.034 14.9 0.1 0.039 14.7 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase E1-E2_ATPase PF00122.20 gi|330835461|ref|YP_004410189.1| - 2.1e-47 161.0 0.3 2.1e-47 161.0 0.3 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|330835461|ref|YP_004410189.1| - 1.7e-35 123.2 0.2 5.1e-35 121.7 0.0 1.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|330835461|ref|YP_004410189.1| - 3.6e-17 62.5 8.6 9.5e-11 42.0 1.2 3.0 3 0 0 3 3 3 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|330835461|ref|YP_004410189.1| - 2.5e-05 24.2 0.2 0.013 15.3 0.1 2.9 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|330835461|ref|YP_004410189.1| - 0.1 12.3 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase HAD PF12710.7 gi|330835461|ref|YP_004410189.1| - 0.11 12.9 0.0 0.53 10.7 0.0 2.1 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DNA_ligase_OB PF03120.16 gi|330835461|ref|YP_004410189.1| - 0.13 12.2 3.7 0.25 11.3 0.2 3.0 3 0 0 3 3 3 0 NAD-dependent DNA ligase OB-fold domain KH_5 PF13184.6 gi|330835461|ref|YP_004410189.1| - 0.32 11.1 2.2 1.6 8.9 0.0 3.0 3 0 0 3 3 3 0 NusA-like KH domain MuF_C PF18819.1 gi|330835462|ref|YP_004410190.1| - 0.081 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Phage MuF-C-terminal domain Rieske PF00355.26 gi|330835463|ref|YP_004410191.1| - 6.4e-11 42.1 0.0 1.1e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain UCR_Fe-S_N PF10399.9 gi|330835463|ref|YP_004410191.1| - 0.012 15.0 1.8 0.021 14.2 1.8 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SoxE PF06525.11 gi|330835465|ref|YP_004410193.1| - 1.3e-55 187.0 4.1 1.3e-55 187.0 4.1 1.7 2 0 0 2 2 2 1 Sulfocyanin (SoxE) domain Copper-bind PF00127.20 gi|330835465|ref|YP_004410193.1| - 0.0003 21.2 0.0 0.00086 19.7 0.0 1.7 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF347 PF03988.12 gi|330835465|ref|YP_004410193.1| - 5.1 7.4 11.4 14 6.0 4.0 2.6 2 1 0 2 2 2 0 Repeat of Unknown Function (DUF347) Phage_holin_2_3 PF16080.5 gi|330835466|ref|YP_004410194.1| - 0.16 11.7 1.2 0.18 11.6 1.2 1.1 1 0 0 1 1 1 0 Bacteriophage holin family HP1 COX2 PF00116.20 gi|330835467|ref|YP_004410195.1| - 1e-05 25.4 1.0 2.2e-05 24.3 1.0 1.6 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Y_Y_Y PF07495.13 gi|330835467|ref|YP_004410195.1| - 0.085 12.8 1.0 1 9.4 0.1 2.8 4 0 0 4 4 4 0 Y_Y_Y domain COX1 PF00115.20 gi|330835468|ref|YP_004410196.1| - 2.2e-68 231.1 72.2 2.8e-68 230.8 72.2 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF1404 PF07185.11 gi|330835469|ref|YP_004410197.1| - 2.6e-48 163.9 12.8 2.9e-48 163.8 12.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) YrhK PF14145.6 gi|330835469|ref|YP_004410197.1| - 1.8 8.5 9.7 0.2 11.6 0.7 3.1 2 2 0 2 2 2 0 YrhK-like protein Molydop_binding PF01568.21 gi|330835470|ref|YP_004410198.1| - 8.3e-15 54.8 0.0 2.3e-14 53.4 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Rieske_3 PF18465.1 gi|330835470|ref|YP_004410198.1| - 4.1e-14 52.6 0.2 8.3e-07 29.2 0.2 2.9 1 1 0 2 2 2 2 Rieske 3Fe-4S Molybdop_Fe4S4 PF04879.16 gi|330835470|ref|YP_004410198.1| - 0.1 12.6 0.1 0.24 11.4 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Ank_4 PF13637.6 gi|330835471|ref|YP_004410199.1| - 2.9e-05 24.5 0.0 5.7e-05 23.6 0.0 1.5 2 0 0 2 2 2 1 Ankyrin repeats (many copies) Ank_3 PF13606.6 gi|330835471|ref|YP_004410199.1| - 0.00044 20.5 0.0 0.086 13.4 0.0 2.2 2 0 0 2 2 2 1 Ankyrin repeat Ank_5 PF13857.6 gi|330835471|ref|YP_004410199.1| - 0.001 19.3 0.0 0.0015 18.8 0.0 1.3 1 1 0 1 1 1 1 Ankyrin repeats (many copies) Ank PF00023.30 gi|330835471|ref|YP_004410199.1| - 0.0032 17.8 0.0 2.3 8.8 0.0 2.1 2 0 0 2 2 2 2 Ankyrin repeat Ank_2 PF12796.7 gi|330835471|ref|YP_004410199.1| - 0.15 12.6 0.0 0.18 12.4 0.0 1.2 1 0 0 1 1 1 0 Ankyrin repeats (3 copies) Pyr_redox_2 PF07992.14 gi|330835472|ref|YP_004410200.1| - 1.3e-57 195.3 0.1 1.6e-57 195.0 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835472|ref|YP_004410200.1| - 1.5e-20 73.5 0.2 2e-17 63.5 0.1 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330835472|ref|YP_004410200.1| - 2.6e-15 56.5 0.0 3.4e-13 49.5 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Reductase_C PF14759.6 gi|330835472|ref|YP_004410200.1| - 6.6e-14 52.2 0.0 1.6e-12 47.8 0.0 2.4 2 0 0 2 2 2 1 Reductase C-terminal NAD_binding_7 PF13241.6 gi|330835472|ref|YP_004410200.1| - 4.3e-06 27.1 0.0 0.023 15.1 0.1 2.4 2 0 0 2 2 2 2 Putative NAD(P)-binding DAO PF01266.24 gi|330835472|ref|YP_004410200.1| - 8e-06 25.7 0.1 0.09 12.3 0.0 3.4 3 1 1 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|330835472|ref|YP_004410200.1| - 1.6e-05 25.0 0.2 1.8 8.6 0.0 3.9 3 1 1 4 4 4 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|330835472|ref|YP_004410200.1| - 2e-05 24.7 0.0 0.013 15.7 0.0 2.9 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|330835472|ref|YP_004410200.1| - 2.7e-05 24.4 0.3 0.35 11.1 0.0 2.9 3 0 0 3 3 3 2 TrkA-N domain HI0933_like PF03486.14 gi|330835472|ref|YP_004410200.1| - 9.7e-05 21.2 0.1 1.3 7.6 0.0 3.8 3 1 1 4 4 4 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|330835472|ref|YP_004410200.1| - 0.00042 19.7 0.0 0.18 11.1 0.0 2.2 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|330835472|ref|YP_004410200.1| - 0.0014 18.7 0.2 1.1 9.3 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase GIDA PF01134.22 gi|330835472|ref|YP_004410200.1| - 0.0015 17.7 0.1 2.5 7.1 0.2 3.4 3 1 1 4 4 4 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|330835472|ref|YP_004410200.1| - 0.004 16.3 0.0 2.8 6.9 0.0 3.1 3 0 0 3 3 3 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|330835472|ref|YP_004410200.1| - 0.0044 16.4 0.0 0.013 14.9 0.0 1.8 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|330835472|ref|YP_004410200.1| - 0.0088 15.1 0.3 2.7 7.0 0.1 2.4 1 1 0 2 2 2 2 Lycopene cyclase protein ThiF PF00899.21 gi|330835472|ref|YP_004410200.1| - 0.0092 15.4 0.1 0.017 14.5 0.1 1.3 1 0 0 1 1 1 1 ThiF family FAD_binding_3 PF01494.19 gi|330835472|ref|YP_004410200.1| - 0.017 14.4 0.0 0.13 11.5 0.1 2.0 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|330835472|ref|YP_004410200.1| - 0.02 14.8 0.0 0.06 13.2 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF1188 PF06690.11 gi|330835472|ref|YP_004410200.1| - 0.031 13.8 0.1 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) Amino_oxidase PF01593.24 gi|330835472|ref|YP_004410200.1| - 0.042 13.2 0.0 0.081 12.2 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|330835472|ref|YP_004410200.1| - 0.047 13.3 0.0 11 5.6 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|330835472|ref|YP_004410200.1| - 0.052 12.7 0.0 1.7 7.7 0.0 2.4 2 1 1 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) AdoHcyase_NAD PF00670.21 gi|330835472|ref|YP_004410200.1| - 0.053 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MFS_1 PF07690.16 gi|330835473|ref|YP_004410201.1| - 1.6e-29 102.9 38.6 1.6e-29 102.9 38.6 2.0 2 1 0 2 2 2 1 Major Facilitator Superfamily MFS_3 PF05977.13 gi|330835473|ref|YP_004410201.1| - 2.3e-05 23.0 15.1 3.1e-05 22.6 4.4 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector MFS_1_like PF12832.7 gi|330835473|ref|YP_004410201.1| - 0.028 13.3 38.9 0.013 14.3 29.9 2.6 1 1 1 2 2 2 0 MFS_1 like family ETRAMP PF09716.10 gi|330835473|ref|YP_004410201.1| - 1.4 9.0 8.2 0.47 10.5 1.4 3.4 3 1 1 4 4 4 0 Malarial early transcribed membrane protein (ETRAMP) SBP56 PF05694.11 gi|330835475|ref|YP_004410203.1| - 7.5e-32 110.7 0.1 8.3e-32 110.6 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) CBS PF00571.28 gi|330835477|ref|YP_004410205.1| - 3.4e-24 85.1 8.1 1.1e-08 35.4 0.0 4.5 4 0 0 4 4 4 4 CBS domain Fer4 PF00037.27 gi|330835477|ref|YP_004410205.1| - 5.2e-09 35.5 19.8 4.9e-06 26.1 7.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835477|ref|YP_004410205.1| - 5.9e-09 35.9 15.5 1.1e-08 35.1 15.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835477|ref|YP_004410205.1| - 9.3e-07 28.6 14.8 0.0019 18.2 2.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330835477|ref|YP_004410205.1| - 7.3e-06 25.8 21.5 0.0087 16.1 5.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330835477|ref|YP_004410205.1| - 1e-05 26.0 18.8 2e-05 25.1 18.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835477|ref|YP_004410205.1| - 1.5e-05 25.0 28.2 9.4e-05 22.4 16.0 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835477|ref|YP_004410205.1| - 0.00021 21.5 18.3 0.0074 16.7 6.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|330835477|ref|YP_004410205.1| - 0.00027 21.0 18.6 0.00044 20.4 18.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835477|ref|YP_004410205.1| - 0.0032 18.4 9.9 0.0089 16.9 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|330835477|ref|YP_004410205.1| - 0.021 15.3 17.4 0.17 12.3 3.9 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330835477|ref|YP_004410205.1| - 0.27 11.8 20.3 18 6.0 20.4 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330835477|ref|YP_004410205.1| - 5.1 8.0 15.9 8.2 7.3 4.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330835477|ref|YP_004410205.1| - 8.3 7.6 23.5 0.57 11.3 8.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain RHH_1 PF01402.21 gi|330835478|ref|YP_004410206.1| - 4.2e-05 23.3 0.0 0.00032 20.5 0.0 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF2811 PF10929.8 gi|330835478|ref|YP_004410206.1| - 0.0033 17.7 0.0 0.0057 16.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2811) Condensation PF00668.20 gi|330835478|ref|YP_004410206.1| - 0.026 13.2 0.0 0.029 13.1 0.0 1.1 1 0 0 1 1 1 0 Condensation domain SH2_2 PF14633.6 gi|330835478|ref|YP_004410206.1| - 0.089 12.2 0.1 0.13 11.7 0.1 1.3 1 1 0 1 1 1 0 SH2 domain CopG_antitoxin PF12441.8 gi|330835478|ref|YP_004410206.1| - 0.1 13.1 0.0 0.16 12.5 0.0 1.3 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system RepB-RCR_reg PF10723.9 gi|330835478|ref|YP_004410206.1| - 0.13 12.2 0.3 0.28 11.2 0.3 1.7 1 1 0 1 1 1 0 Replication regulatory protein RepB FmdA_AmdA PF03069.15 gi|330835480|ref|YP_004410208.1| - 2.9e-72 243.6 0.0 1.2e-43 149.4 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family AA_permease_2 PF13520.6 gi|330835481|ref|YP_004410209.1| - 9.6e-27 93.9 57.8 9.6e-27 93.9 57.8 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|330835481|ref|YP_004410209.1| - 1.5e-18 66.7 63.3 2.2e-18 66.1 60.5 2.1 1 1 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|330835481|ref|YP_004410209.1| - 0.0011 17.9 14.3 0.0011 17.9 14.3 3.4 2 1 1 3 3 3 1 Spore germination protein MFS_1 PF07690.16 gi|330835482|ref|YP_004410210.1| - 4.3e-33 114.7 33.4 4.3e-33 114.7 33.4 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835482|ref|YP_004410210.1| - 3.9e-32 111.7 24.4 4.8e-32 111.4 24.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|330835482|ref|YP_004410210.1| - 2.3e-06 27.1 6.6 2.3e-06 27.1 6.6 2.1 2 1 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB TRI12 PF06609.13 gi|330835482|ref|YP_004410210.1| - 0.0002 20.0 4.7 0.0002 20.0 4.7 1.8 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) BPD_transp_1 PF00528.22 gi|330835484|ref|YP_004410212.1| - 1.1e-15 57.9 31.3 7.8e-12 45.3 16.4 3.6 2 2 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|330835485|ref|YP_004410213.1| - 3.8e-36 124.6 0.0 7.9e-36 123.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835485|ref|YP_004410213.1| - 1.2e-08 35.2 0.0 0.00043 20.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330835485|ref|YP_004410213.1| - 8.7e-08 31.9 1.0 6e-07 29.1 1.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.10 gi|330835485|ref|YP_004410213.1| - 7.3e-07 29.3 0.4 1.7e-06 28.1 0.2 1.8 2 0 0 2 2 1 1 TOBE domain AAA_23 PF13476.6 gi|330835485|ref|YP_004410213.1| - 5.6e-06 27.0 0.3 1.6e-05 25.6 0.1 1.8 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|330835485|ref|YP_004410213.1| - 0.00026 21.0 0.0 0.00036 20.5 0.0 1.3 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|330835485|ref|YP_004410213.1| - 0.00035 20.2 0.0 0.00078 19.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|330835485|ref|YP_004410213.1| - 0.0011 18.9 0.2 0.0026 17.7 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|330835485|ref|YP_004410213.1| - 0.0023 18.3 0.1 0.004 17.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330835485|ref|YP_004410213.1| - 0.0026 18.0 0.1 0.0061 16.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|330835485|ref|YP_004410213.1| - 0.0029 17.4 0.0 0.0055 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|330835485|ref|YP_004410213.1| - 0.011 15.1 0.0 0.33 10.2 0.0 2.5 3 0 0 3 3 3 0 Zeta toxin AAA_18 PF13238.6 gi|330835485|ref|YP_004410213.1| - 0.012 16.2 0.0 0.023 15.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|330835485|ref|YP_004410213.1| - 0.014 15.3 0.1 0.045 13.7 0.0 1.8 2 0 0 2 2 2 0 NACHT domain T2SSE PF00437.20 gi|330835485|ref|YP_004410213.1| - 0.015 14.4 0.0 0.03 13.4 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_15 PF13175.6 gi|330835485|ref|YP_004410213.1| - 0.018 14.7 0.1 0.034 13.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.6 gi|330835485|ref|YP_004410213.1| - 0.022 15.0 0.0 0.039 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|330835485|ref|YP_004410213.1| - 0.027 14.9 0.3 0.22 12.0 0.3 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|330835485|ref|YP_004410213.1| - 0.029 14.3 0.0 0.059 13.3 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain RNA12 PF10443.9 gi|330835485|ref|YP_004410213.1| - 0.029 13.1 0.1 0.066 11.9 0.0 1.6 2 0 0 2 2 2 0 RNA12 protein cobW PF02492.19 gi|330835485|ref|YP_004410213.1| - 0.046 13.3 0.0 0.09 12.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|330835485|ref|YP_004410213.1| - 0.057 13.1 0.0 0.13 11.9 0.0 1.6 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.6 gi|330835485|ref|YP_004410213.1| - 0.06 13.6 0.0 0.16 12.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain DnaB_C PF03796.15 gi|330835485|ref|YP_004410213.1| - 0.07 12.4 0.5 0.87 8.9 0.4 2.1 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_13 PF13166.6 gi|330835485|ref|YP_004410213.1| - 0.073 11.7 0.0 0.34 9.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|330835485|ref|YP_004410213.1| - 0.08 13.3 0.0 0.26 11.6 0.0 2.0 1 1 0 1 1 1 0 TOBE domain AAA_19 PF13245.6 gi|330835485|ref|YP_004410213.1| - 0.1 12.9 0.1 0.17 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|330835485|ref|YP_004410213.1| - 0.1 11.3 1.1 5.3 5.7 0.1 2.5 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_25 PF13481.6 gi|330835485|ref|YP_004410213.1| - 0.11 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|330835485|ref|YP_004410213.1| - 0.16 10.8 0.0 0.28 9.9 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) SBP_bac_1 PF01547.25 gi|330835486|ref|YP_004410214.1| - 1.2e-14 55.0 0.0 2.6e-14 53.9 0.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|330835486|ref|YP_004410214.1| - 5.7e-14 52.6 0.1 1.3e-13 51.4 0.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|330835486|ref|YP_004410214.1| - 8.1e-05 22.5 0.5 0.0045 16.7 0.1 2.6 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|330835486|ref|YP_004410214.1| - 0.00011 21.7 0.0 0.00025 20.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4330 PF14221.6 gi|330835486|ref|YP_004410214.1| - 0.054 13.7 1.8 0.095 12.9 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4307 PF14155.6 gi|330835486|ref|YP_004410214.1| - 0.2 11.5 1.7 0.46 10.3 1.7 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) RIFIN PF02009.16 gi|330835488|ref|YP_004410216.1| - 0.013 15.4 5.2 0.019 14.9 5.2 1.2 1 0 0 1 1 1 0 Rifin TMEM154 PF15102.6 gi|330835488|ref|YP_004410216.1| - 0.055 13.4 7.1 0.18 11.7 7.1 1.9 1 0 0 1 1 1 0 TMEM154 protein family MGC-24 PF05283.11 gi|330835488|ref|YP_004410216.1| - 0.14 12.6 9.3 0.45 11.0 9.3 1.9 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin DUF2172 PF09940.9 gi|330835488|ref|YP_004410216.1| - 0.14 12.6 0.5 11 6.5 0.0 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF2172) Peptidase_M56 PF05569.11 gi|330835488|ref|YP_004410216.1| - 0.32 10.1 6.9 0.47 9.6 1.9 2.3 2 0 0 2 2 2 0 BlaR1 peptidase M56 DUF2561 PF10812.8 gi|330835488|ref|YP_004410216.1| - 0.34 10.9 5.3 0.31 11.0 4.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2561) Mucin PF01456.17 gi|330835488|ref|YP_004410216.1| - 6.6 6.7 21.4 19 5.3 21.4 1.7 1 0 0 1 1 1 0 Mucin-like glycoprotein MFS_1 PF07690.16 gi|330835489|ref|YP_004410217.1| - 1.1e-27 97.0 81.7 1.8e-21 76.5 43.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835489|ref|YP_004410217.1| - 3.8e-17 62.3 29.9 2e-13 50.1 7.7 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter tRNA_anti-codon PF01336.25 gi|330835490|ref|YP_004410218.1| - 0.076 13.0 0.2 0.13 12.2 0.2 1.6 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Ldh_1_N PF00056.23 gi|330835491|ref|YP_004410219.1| - 1.4e-30 106.2 0.0 3e-30 105.2 0.0 1.5 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|330835491|ref|YP_004410219.1| - 1.1e-06 28.7 0.0 1.6e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain F420_oxidored PF03807.17 gi|330835491|ref|YP_004410219.1| - 0.0025 18.3 0.0 0.007 16.9 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DUF4382 PF14321.6 gi|330835492|ref|YP_004410220.1| - 5.1e-08 33.3 0.0 8e-08 32.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4382) CbiA PF01656.23 gi|330835493|ref|YP_004410221.1| - 9.6e-07 28.9 0.0 2.1e-06 27.8 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330835493|ref|YP_004410221.1| - 6.1e-06 25.9 0.0 8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|330835493|ref|YP_004410221.1| - 0.00014 21.9 0.0 0.00022 21.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|330835493|ref|YP_004410221.1| - 0.00028 20.3 0.0 0.0006 19.2 0.0 1.7 1 1 0 1 1 1 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|330835493|ref|YP_004410221.1| - 0.0038 16.7 0.2 0.0062 16.0 0.2 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Aldo_ket_red PF00248.21 gi|330835494|ref|YP_004410222.1| - 8.2e-65 218.9 0.0 5.1e-63 213.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Nramp PF01566.18 gi|330835495|ref|YP_004410223.1| - 2.3e-41 142.0 22.9 2.9e-41 141.6 22.9 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein DrsE PF02635.15 gi|330835496|ref|YP_004410224.1| - 1.3e-09 38.4 0.0 1.6e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family LigB PF02900.18 gi|330835497|ref|YP_004410225.1| - 2.6e-35 121.8 0.0 2.8e-35 121.7 0.0 1.0 1 0 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase FF PF01846.19 gi|330835497|ref|YP_004410225.1| - 0.14 12.3 0.2 1.5 9.1 0.0 2.8 4 0 0 4 4 4 0 FF domain Memo PF01875.17 gi|330835497|ref|YP_004410225.1| - 0.15 11.2 0.0 0.56 9.3 0.0 1.7 2 0 0 2 2 2 0 Memo-like protein zinc_ribbon_2 PF13240.6 gi|330835498|ref|YP_004410226.1| - 1.2e-14 53.5 15.6 2.7e-08 33.3 3.8 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|330835498|ref|YP_004410226.1| - 1.1e-08 35.0 12.3 1.5e-08 34.5 12.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330835498|ref|YP_004410226.1| - 8.1e-05 21.9 9.9 0.0037 16.6 1.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-RanBP PF00641.18 gi|330835498|ref|YP_004410226.1| - 0.0011 18.3 10.9 0.022 14.0 2.3 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others DUF973 PF06157.11 gi|330835498|ref|YP_004410226.1| - 0.0025 16.9 18.0 0.0051 15.9 18.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF973) zf-tcix PF14952.6 gi|330835498|ref|YP_004410226.1| - 0.049 13.3 10.6 0.89 9.2 2.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Mu-like_Com PF10122.9 gi|330835498|ref|YP_004410226.1| - 0.093 12.2 7.4 1.8 8.0 1.6 2.5 2 0 0 2 2 2 0 Mu-like prophage protein Com Zn_Tnp_IS1 PF03811.13 gi|330835498|ref|YP_004410226.1| - 0.11 12.3 1.2 6.8 6.5 0.1 2.7 2 0 0 2 2 2 0 InsA N-terminal domain zf_C2H2_10 PF18414.1 gi|330835498|ref|YP_004410226.1| - 0.18 11.3 4.6 1.4 8.5 0.3 2.7 2 0 0 2 2 2 0 C2H2 type zinc-finger tRNA-synt_1g PF09334.11 gi|330835498|ref|YP_004410226.1| - 0.28 9.9 1.5 0.4 9.4 1.5 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-NADH-PPase PF09297.11 gi|330835498|ref|YP_004410226.1| - 0.93 9.2 5.2 8.7 6.1 0.9 2.7 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|330835498|ref|YP_004410226.1| - 0.95 10.3 11.7 4 8.2 3.1 2.3 2 0 0 2 2 2 0 zinc-ribbon family Phage_holin_3_6 PF07332.11 gi|330835498|ref|YP_004410226.1| - 1.5 8.9 17.1 0.24 11.4 0.8 3.0 1 1 2 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4776 PF16003.5 gi|330835498|ref|YP_004410226.1| - 3.8 6.4 8.1 0.34 9.8 3.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4776) OrfB_Zn_ribbon PF07282.11 gi|330835498|ref|YP_004410226.1| - 4.5 7.3 12.3 2.6 8.0 2.3 2.3 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|330835498|ref|YP_004410226.1| - 4.6 7.2 6.0 0.9 9.5 0.4 2.3 1 1 2 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) CpXC PF14353.6 gi|330835498|ref|YP_004410226.1| - 6.7 6.8 6.0 2.5e+02 1.7 6.0 2.3 1 1 0 1 1 1 0 CpXC protein NMD3 PF04981.13 gi|330835498|ref|YP_004410226.1| - 7.9 5.9 7.2 7.9 5.9 0.8 2.0 2 0 0 2 2 2 0 NMD3 family DUF4874 PF16173.5 gi|330835499|ref|YP_004410227.1| - 0.074 12.7 0.0 0.083 12.6 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4874) ABC_tran PF00005.27 gi|330835500|ref|YP_004410228.1| - 3.1e-28 99.0 0.0 7.2e-28 97.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter oligo_HPY PF08352.12 gi|330835500|ref|YP_004410228.1| - 5e-15 55.8 0.1 8.7e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|330835500|ref|YP_004410228.1| - 9.9e-06 25.6 0.8 0.06 13.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|330835500|ref|YP_004410228.1| - 0.0003 21.1 0.6 0.0024 18.1 0.6 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|330835500|ref|YP_004410228.1| - 0.00035 20.1 0.1 0.0013 18.2 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330835500|ref|YP_004410228.1| - 0.00044 20.7 0.1 0.00062 20.2 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|330835500|ref|YP_004410228.1| - 0.0036 16.5 0.1 0.006 15.8 0.1 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.6 gi|330835500|ref|YP_004410228.1| - 0.0095 15.7 0.0 0.044 13.5 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain ATPase PF06745.13 gi|330835500|ref|YP_004410228.1| - 0.042 13.2 0.5 0.21 10.9 0.0 2.3 3 0 0 3 3 3 0 KaiC AAA_23 PF13476.6 gi|330835500|ref|YP_004410228.1| - 0.063 13.8 0.1 0.14 12.7 0.0 1.5 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|330835500|ref|YP_004410228.1| - 0.063 12.7 0.1 0.73 9.2 0.0 2.4 2 1 0 2 2 2 0 PhoH-like protein PRK PF00485.18 gi|330835500|ref|YP_004410228.1| - 0.064 13.0 0.0 0.096 12.4 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.6 gi|330835500|ref|YP_004410228.1| - 0.066 13.8 0.1 0.12 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|330835500|ref|YP_004410228.1| - 0.073 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|330835500|ref|YP_004410228.1| - 0.09 12.7 0.1 0.15 11.9 0.1 1.3 1 0 0 1 1 1 0 RsgA GTPase Glyco_hydro_75 PF07335.11 gi|330835500|ref|YP_004410228.1| - 0.095 13.0 0.0 0.15 12.4 0.0 1.3 1 0 0 1 1 1 0 Fungal chitosanase of glycosyl hydrolase group 75 AAA_13 PF13166.6 gi|330835500|ref|YP_004410228.1| - 0.18 10.4 0.0 3.5 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|330835501|ref|YP_004410229.1| - 1.8e-26 93.3 0.0 2.6e-26 92.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|330835501|ref|YP_004410229.1| - 3.1e-23 82.0 0.1 5.5e-23 81.3 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region PRK PF00485.18 gi|330835501|ref|YP_004410229.1| - 2.7e-05 24.0 0.0 5.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family SMC_N PF02463.19 gi|330835501|ref|YP_004410229.1| - 0.00022 20.7 2.9 0.0028 17.1 2.9 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|330835501|ref|YP_004410229.1| - 0.00031 21.1 0.0 0.00044 20.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|330835501|ref|YP_004410229.1| - 0.00094 19.5 0.5 0.0068 16.7 0.5 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|330835501|ref|YP_004410229.1| - 0.0092 15.9 0.2 0.023 14.6 0.0 1.7 2 0 0 2 2 2 1 RsgA GTPase NB-ARC PF00931.22 gi|330835501|ref|YP_004410229.1| - 0.0093 15.2 0.9 0.017 14.4 0.9 1.7 1 1 0 1 1 1 1 NB-ARC domain AAA_5 PF07728.14 gi|330835501|ref|YP_004410229.1| - 0.024 14.6 0.0 0.044 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|330835501|ref|YP_004410229.1| - 0.039 13.7 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|330835501|ref|YP_004410229.1| - 0.047 13.8 0.0 0.12 12.5 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase MeaB PF03308.16 gi|330835501|ref|YP_004410229.1| - 0.057 12.4 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Septin PF00735.18 gi|330835501|ref|YP_004410229.1| - 0.084 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Septin LepB_GAP_N PF18172.1 gi|330835501|ref|YP_004410229.1| - 0.09 12.7 0.1 0.29 11.0 0.0 1.7 2 0 0 2 2 2 0 LepB GAP domain N-terminal subdomain Rad17 PF03215.15 gi|330835501|ref|YP_004410229.1| - 0.091 12.7 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_7 PF12775.7 gi|330835501|ref|YP_004410229.1| - 0.099 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF87 PF01935.17 gi|330835501|ref|YP_004410229.1| - 0.13 12.4 1.0 0.6 10.2 0.2 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|330835501|ref|YP_004410229.1| - 0.14 12.6 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.12 gi|330835501|ref|YP_004410229.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_21 PF13304.6 gi|330835501|ref|YP_004410229.1| - 0.17 11.7 0.1 4.7 6.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_1 PF03266.15 gi|330835501|ref|YP_004410229.1| - 0.18 11.7 1.6 0.45 10.4 0.4 2.2 3 0 0 3 3 3 0 NTPase AAA_25 PF13481.6 gi|330835501|ref|YP_004410229.1| - 0.19 11.3 0.1 0.8 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|330835502|ref|YP_004410230.1| - 9.2e-19 67.9 17.1 9.2e-19 67.9 17.1 2.3 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|330835502|ref|YP_004410230.1| - 0.00014 21.8 1.4 0.00014 21.8 1.4 3.5 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|330835503|ref|YP_004410231.1| - 5e-32 111.1 16.7 5e-32 111.1 16.7 1.6 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|330835505|ref|YP_004410233.1| - 1.3e-29 103.4 12.9 1.2e-17 64.0 1.8 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle RIFIN PF02009.16 gi|330835505|ref|YP_004410233.1| - 0.3 10.9 0.3 0.45 10.4 0.3 1.3 1 0 0 1 1 1 0 Rifin Peptidase_S9 PF00326.21 gi|330835506|ref|YP_004410234.1| - 2.3e-42 144.9 0.0 3.5e-42 144.3 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|330835506|ref|YP_004410234.1| - 2.4e-12 46.9 0.0 8.7e-12 45.1 0.0 1.9 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|330835506|ref|YP_004410234.1| - 1.3e-11 44.3 0.0 5e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|330835506|ref|YP_004410234.1| - 2.5e-11 43.7 0.0 1.3e-07 31.5 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|330835506|ref|YP_004410234.1| - 3.1e-07 30.5 0.0 4.9e-05 23.4 0.0 2.2 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|330835506|ref|YP_004410234.1| - 1.9e-05 25.4 0.0 0.00019 22.1 0.0 2.1 1 1 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|330835506|ref|YP_004410234.1| - 2.9e-05 23.8 0.0 0.00056 19.6 0.0 2.1 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.13 gi|330835506|ref|YP_004410234.1| - 0.00013 21.9 0.0 0.0019 18.1 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Esterase PF00756.20 gi|330835506|ref|YP_004410234.1| - 0.00021 21.0 0.0 0.00079 19.1 0.0 1.9 1 1 0 1 1 1 1 Putative esterase Abhydrolase_4 PF08386.10 gi|330835506|ref|YP_004410234.1| - 0.00054 20.0 0.0 0.00099 19.2 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein AXE1 PF05448.12 gi|330835506|ref|YP_004410234.1| - 0.0036 16.0 0.0 0.0063 15.2 0.0 1.4 1 0 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.21 gi|330835506|ref|YP_004410234.1| - 0.03 13.1 0.1 0.14 10.9 0.0 2.1 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.12 gi|330835506|ref|YP_004410234.1| - 0.034 12.9 0.0 0.053 12.3 0.0 1.2 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF2048 PF09752.9 gi|330835506|ref|YP_004410234.1| - 0.14 11.2 0.0 0.24 10.4 0.0 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 WD40 PF00400.32 gi|330835506|ref|YP_004410234.1| - 0.15 13.0 0.1 0.47 11.4 0.1 1.9 1 0 0 1 1 1 0 WD domain, G-beta repeat FAD_binding_7 PF03441.14 gi|330835507|ref|YP_004410235.1| - 2.9e-68 229.4 2.1 3.8e-68 229.0 2.1 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|330835507|ref|YP_004410235.1| - 1.7e-33 115.9 0.0 3.5e-33 114.9 0.0 1.5 2 0 0 2 2 2 1 DNA photolyase OprF PF05736.11 gi|330835507|ref|YP_004410235.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 OprF membrane domain ADH_N PF08240.12 gi|330835508|ref|YP_004410236.1| - 1.7e-24 85.8 0.1 2.9e-24 85.0 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330835508|ref|YP_004410236.1| - 7.9e-19 67.9 0.4 1.3e-18 67.2 0.4 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330835508|ref|YP_004410236.1| - 1.9e-08 35.4 0.0 3.2e-08 34.7 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ELFV_dehydrog PF00208.21 gi|330835508|ref|YP_004410236.1| - 0.049 13.4 0.0 0.096 12.4 0.0 1.5 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SKG6 PF08693.10 gi|330835509|ref|YP_004410237.1| - 0.43 10.0 4.1 0.8 9.2 4.1 1.4 1 0 0 1 1 1 0 Transmembrane alpha-helix domain FAD-oxidase_C PF02913.19 gi|330835510|ref|YP_004410238.1| - 1.1e-44 153.0 0.0 1.7e-44 152.4 0.0 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|330835510|ref|YP_004410238.1| - 2.1e-42 144.1 0.0 4.7e-42 143.0 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Epimerase PF01370.21 gi|330835511|ref|YP_004410239.1| - 1e-10 41.5 0.0 1.5e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.12 gi|330835511|ref|YP_004410239.1| - 1.7e-05 24.2 0.0 2.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Male sterility protein Sacchrp_dh_NADP PF03435.18 gi|330835511|ref|YP_004410239.1| - 0.00054 20.2 0.0 0.0017 18.6 0.0 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|330835511|ref|YP_004410239.1| - 0.0012 18.0 0.0 0.0015 17.7 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Pyr_redox PF00070.27 gi|330835511|ref|YP_004410239.1| - 0.086 13.4 0.0 0.22 12.1 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330835511|ref|YP_004410239.1| - 0.13 11.6 0.0 0.5 9.6 0.0 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain TPP_enzyme_N PF02776.18 gi|330835513|ref|YP_004410241.1| - 3.9e-42 143.8 0.0 1.9e-41 141.6 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|330835513|ref|YP_004410241.1| - 8.9e-13 48.3 1.1 1e-12 48.1 0.0 1.6 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|330835513|ref|YP_004410241.1| - 2.2e-06 27.5 0.0 1.4e-05 24.8 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|330835513|ref|YP_004410241.1| - 0.09 12.5 0.1 0.2 11.4 0.0 1.6 2 0 0 2 2 2 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PPDK_N PF01326.19 gi|330835514|ref|YP_004410242.1| - 1.8e-72 244.4 0.0 2.2e-72 244.1 0.0 1.0 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EF-hand_8 PF13833.6 gi|330835514|ref|YP_004410242.1| - 0.048 13.5 0.2 0.12 12.2 0.2 1.6 1 0 0 1 1 1 0 EF-hand domain pair Isochorismatase PF00857.20 gi|330835515|ref|YP_004410243.1| - 1.3e-37 129.6 0.0 1.5e-37 129.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DUF3834 PF12916.7 gi|330835516|ref|YP_004410244.1| - 6.1e-79 263.9 0.1 7.7e-79 263.6 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.20 gi|330835516|ref|YP_004410244.1| - 0.071 12.5 0.0 0.14 11.5 0.0 1.7 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 FMN_red PF03358.15 gi|330835517|ref|YP_004410245.1| - 3.2e-17 62.7 0.0 4.3e-17 62.3 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|330835517|ref|YP_004410245.1| - 1.7e-05 24.6 0.0 8.5e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|330835517|ref|YP_004410245.1| - 3.5e-05 24.1 0.0 0.00032 21.0 0.0 2.3 2 1 0 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.25 gi|330835517|ref|YP_004410245.1| - 0.037 14.2 0.0 1.4 9.1 0.0 2.3 1 1 0 1 1 1 0 Flavodoxin RNA_pol_Rpb5_C PF01191.19 gi|330835518|ref|YP_004410246.1| - 0.025 14.4 0.0 0.05 13.5 0.0 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain Sugar_tr PF00083.24 gi|330835519|ref|YP_004410247.1| - 1.1e-41 143.2 19.5 1.7e-41 142.5 19.5 1.3 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|330835519|ref|YP_004410247.1| - 1e-27 97.0 54.5 5.2e-24 84.8 25.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily OATP PF03137.20 gi|330835519|ref|YP_004410247.1| - 8.5 4.5 11.1 1.9 6.7 0.3 3.6 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family PAP2 PF01569.21 gi|330835520|ref|YP_004410248.1| - 1.5e-21 76.5 4.2 1.5e-21 76.5 4.2 1.7 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|330835520|ref|YP_004410248.1| - 1.1e-07 31.8 17.7 2.8e-07 30.4 14.3 2.4 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|330835520|ref|YP_004410248.1| - 0.011 16.2 1.0 0.011 16.2 1.0 2.7 3 1 0 3 3 3 0 PAP2 superfamily C-terminal Molybdopterin PF00384.22 gi|330835522|ref|YP_004410250.1| - 2.1e-09 36.9 0.0 1.5e-05 24.2 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase MFS_1 PF07690.16 gi|330835523|ref|YP_004410251.1| - 1.3e-29 103.3 66.0 1.7e-22 79.8 37.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|330835523|ref|YP_004410251.1| - 0.007 14.8 18.4 0.11 10.9 9.0 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector DUF3185 PF11381.8 gi|330835524|ref|YP_004410252.1| - 0.00073 19.5 7.9 0.0055 16.7 0.3 2.7 3 0 0 3 3 3 2 Protein of unknown function (DUF3185) DUF2371 PF10177.9 gi|330835524|ref|YP_004410252.1| - 0.039 14.1 1.3 2.1 8.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) ASFV_L11L PF05293.11 gi|330835524|ref|YP_004410252.1| - 0.055 13.8 1.4 10 6.5 0.6 2.3 2 0 0 2 2 2 0 African swine fever virus (ASFV) L11L protein TusA PF01206.17 gi|330835525|ref|YP_004410253.1| - 6.1e-14 51.6 0.0 1.8e-13 50.1 0.0 1.9 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1230 PF06799.11 gi|330835525|ref|YP_004410253.1| - 0.017 15.2 0.1 0.035 14.2 0.1 1.5 1 0 0 1 1 1 0 Conserved in the green lineage and diatoms 27 MFS_1 PF07690.16 gi|330835526|ref|YP_004410254.1| - 6.4e-24 84.5 54.5 5.7e-18 65.0 20.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|330835526|ref|YP_004410254.1| - 0.00027 19.5 3.4 0.00051 18.6 3.4 1.5 1 0 0 1 1 1 1 Transmembrane secretion effector MFS_2 PF13347.6 gi|330835526|ref|YP_004410254.1| - 0.1 11.1 34.6 4.5 5.7 34.6 2.9 1 1 0 1 1 1 0 MFS/sugar transport protein DUF72 PF01904.18 gi|330835527|ref|YP_004410255.1| - 1.3e-32 113.7 0.7 2.3e-32 112.9 0.7 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF72 Sugar_tr PF00083.24 gi|330835528|ref|YP_004410256.1| - 2e-24 86.3 27.7 2.4e-20 72.8 12.0 2.4 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1 PF07690.16 gi|330835528|ref|YP_004410256.1| - 2.9e-22 79.1 46.8 1e-13 50.9 27.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Oxidored_FMN PF00724.20 gi|330835529|ref|YP_004410257.1| - 7e-52 176.8 0.0 9.6e-52 176.3 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Pyr_redox PF00070.27 gi|330835529|ref|YP_004410257.1| - 6e-08 33.1 1.9 3.8e-06 27.4 0.8 3.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|330835529|ref|YP_004410257.1| - 1.4e-07 31.7 0.1 3e-07 30.6 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|330835529|ref|YP_004410257.1| - 3.5e-06 26.4 0.0 5.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|330835529|ref|YP_004410257.1| - 8.5e-06 25.2 0.0 2.6e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|330835529|ref|YP_004410257.1| - 2.7e-05 23.7 0.0 4.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|330835529|ref|YP_004410257.1| - 2.7e-05 23.9 0.1 6e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|330835529|ref|YP_004410257.1| - 3.4e-05 23.2 0.1 5.9e-05 22.4 0.1 1.2 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|330835529|ref|YP_004410257.1| - 5.8e-05 22.3 0.0 8.8e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|330835529|ref|YP_004410257.1| - 0.00011 21.6 0.4 0.00018 20.9 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|330835529|ref|YP_004410257.1| - 0.0003 19.6 0.1 0.00049 18.9 0.1 1.3 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|330835529|ref|YP_004410257.1| - 0.0012 18.0 0.0 0.0031 16.6 0.0 1.7 2 0 0 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|330835529|ref|YP_004410257.1| - 0.0014 18.6 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Dus PF01207.17 gi|330835529|ref|YP_004410257.1| - 0.0025 17.0 0.0 0.026 13.6 0.0 2.2 1 1 1 2 2 2 1 Dihydrouridine synthase (Dus) AlaDh_PNT_C PF01262.21 gi|330835529|ref|YP_004410257.1| - 0.013 14.8 0.0 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Amino_oxidase PF01593.24 gi|330835529|ref|YP_004410257.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|330835529|ref|YP_004410257.1| - 0.08 12.2 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase MFS_1 PF07690.16 gi|330835532|ref|YP_004410260.1| - 4.3e-48 164.1 35.1 5.4e-48 163.7 35.1 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835532|ref|YP_004410260.1| - 7.2e-14 51.5 24.2 1.2e-13 50.7 24.1 1.3 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|330835532|ref|YP_004410260.1| - 0.0012 18.2 22.6 0.094 12.0 22.6 2.1 1 1 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB AMP-binding PF00501.28 gi|330835533|ref|YP_004410261.1| - 2e-69 234.2 0.0 2.6e-69 233.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330835533|ref|YP_004410261.1| - 7.9e-25 87.6 2.0 1.5e-24 86.7 2.0 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AAA_31 PF13614.6 gi|330835534|ref|YP_004410262.1| - 2.7e-07 30.7 0.3 5.6e-07 29.6 0.3 1.6 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|330835534|ref|YP_004410262.1| - 4.8e-07 29.5 0.8 8.7e-07 28.6 0.8 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|330835534|ref|YP_004410262.1| - 2.8e-05 24.2 0.0 3.9e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|330835534|ref|YP_004410262.1| - 0.0021 17.4 0.3 0.0037 16.6 0.3 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|330835534|ref|YP_004410262.1| - 0.0022 17.3 0.5 0.0037 16.5 0.5 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase DUF87 PF01935.17 gi|330835534|ref|YP_004410262.1| - 0.041 14.0 0.7 0.077 13.1 0.7 1.5 1 1 0 1 1 1 0 Helicase HerA, central domain Fer4_NifH PF00142.18 gi|330835534|ref|YP_004410262.1| - 0.045 13.2 0.2 0.082 12.3 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|330835534|ref|YP_004410262.1| - 0.13 11.7 0.7 0.25 10.8 0.7 1.5 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ PmbA_TldD PF01523.16 gi|330835535|ref|YP_004410263.1| - 1.7e-37 129.8 0.1 2.2e-37 129.5 0.1 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|330835536|ref|YP_004410264.1| - 1.1e-29 104.2 0.5 1.9e-29 103.4 0.5 1.4 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NifU PF01106.17 gi|330835536|ref|YP_004410264.1| - 0.078 13.1 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 NifU-like domain AMP-binding PF00501.28 gi|330835537|ref|YP_004410265.1| - 2.7e-83 279.9 0.0 3.1e-83 279.7 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330835537|ref|YP_004410265.1| - 3e-19 69.8 0.3 6.4e-19 68.7 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|330835538|ref|YP_004410266.1| - 1.5e-39 135.6 4.2 2.2e-39 135.1 4.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|330835538|ref|YP_004410266.1| - 5.5e-33 114.0 0.1 1.2e-32 113.0 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|330835538|ref|YP_004410266.1| - 1.3e-23 83.0 0.1 3.2e-23 81.8 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|330835538|ref|YP_004410266.1| - 7.1e-16 58.7 4.0 1.1e-15 58.1 4.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|330835538|ref|YP_004410266.1| - 0.00096 18.9 0.1 0.0054 16.4 0.1 2.2 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal PucR PF07905.11 gi|330835538|ref|YP_004410266.1| - 0.0071 16.6 0.2 0.22 11.8 0.0 2.9 3 0 0 3 3 3 1 Purine catabolism regulatory protein-like family NAGLU_N PF12971.7 gi|330835538|ref|YP_004410266.1| - 0.061 13.1 0.0 0.17 11.7 0.0 1.8 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain ECH_1 PF00378.20 gi|330835539|ref|YP_004410267.1| - 4.8e-66 222.6 0.0 9.5e-66 221.7 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH_N PF02737.18 gi|330835539|ref|YP_004410267.1| - 4.4e-61 205.9 0.3 8.1e-61 205.0 0.3 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|330835539|ref|YP_004410267.1| - 1.3e-43 147.5 0.1 1.5e-24 86.5 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|330835539|ref|YP_004410267.1| - 4.2e-42 144.8 0.3 2.7e-38 132.3 0.0 2.5 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase F420_oxidored PF03807.17 gi|330835539|ref|YP_004410267.1| - 0.001 19.6 0.2 0.0039 17.7 0.2 2.0 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|330835539|ref|YP_004410267.1| - 0.0029 17.6 0.2 0.052 13.5 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|330835539|ref|YP_004410267.1| - 0.003 17.8 0.0 0.0072 16.5 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.21 gi|330835539|ref|YP_004410267.1| - 0.0038 16.6 0.3 0.0081 15.5 0.3 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Glyco_hydro_4 PF02056.16 gi|330835539|ref|YP_004410267.1| - 0.043 13.4 0.0 0.08 12.5 0.0 1.4 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase UDPG_MGDP_dh_N PF03721.14 gi|330835539|ref|YP_004410267.1| - 0.075 12.6 0.1 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain PaaX PF07848.12 gi|330835539|ref|YP_004410267.1| - 0.082 13.1 0.1 1.9 8.8 0.0 2.6 3 0 0 3 3 3 0 PaaX-like protein ADH_N PF08240.12 gi|330835540|ref|YP_004410268.1| - 5.6e-16 58.4 4.2 1.9e-15 56.7 1.6 2.5 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330835540|ref|YP_004410268.1| - 1.7e-15 57.1 0.0 4.1e-15 55.9 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|330835540|ref|YP_004410268.1| - 2e-11 45.1 0.0 3.1e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase KR PF08659.10 gi|330835540|ref|YP_004410268.1| - 0.00064 19.7 0.1 0.001 19.0 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|330835540|ref|YP_004410268.1| - 0.0033 16.9 0.1 0.0046 16.5 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.25 gi|330835540|ref|YP_004410268.1| - 0.012 15.1 0.1 0.017 14.6 0.1 1.3 1 0 0 1 1 1 0 short chain dehydrogenase ACP_syn_III_C PF08541.10 gi|330835540|ref|YP_004410268.1| - 0.013 15.7 0.1 0.026 14.7 0.1 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ELFV_dehydrog PF00208.21 gi|330835540|ref|YP_004410268.1| - 0.081 12.6 0.2 0.11 12.2 0.2 1.2 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NADH_4Fe-4S PF10589.9 gi|330835540|ref|YP_004410268.1| - 0.1 12.6 2.0 0.24 11.5 2.0 1.5 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NmrA PF05368.13 gi|330835540|ref|YP_004410268.1| - 0.12 11.9 0.2 0.18 11.4 0.2 1.3 1 0 0 1 1 1 0 NmrA-like family SIS_2 PF13580.6 gi|330835540|ref|YP_004410268.1| - 0.17 11.9 0.3 0.5 10.4 0.2 1.8 2 0 0 2 2 2 0 SIS domain OB_aCoA_assoc PF01796.17 gi|330835541|ref|YP_004410269.1| - 4.3e-13 49.0 0.2 6.1e-13 48.6 0.2 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|330835541|ref|YP_004410269.1| - 4.4e-12 45.6 0.2 7.6e-12 44.9 0.2 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_4 PF13717.6 gi|330835541|ref|YP_004410269.1| - 0.044 13.7 3.5 0.046 13.6 0.2 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TackOD1 PF18551.1 gi|330835541|ref|YP_004410269.1| - 0.046 13.4 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 CpXC PF14353.6 gi|330835541|ref|YP_004410269.1| - 0.066 13.3 0.7 0.095 12.8 0.0 1.6 2 0 0 2 2 2 0 CpXC protein HypA PF01155.19 gi|330835541|ref|YP_004410269.1| - 0.094 12.7 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|330835541|ref|YP_004410269.1| - 0.16 12.2 1.6 0.29 11.3 1.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.6 gi|330835541|ref|YP_004410269.1| - 0.26 10.6 3.0 4.2 6.8 0.2 2.4 1 1 0 2 2 2 0 Transcription factor zinc-finger zf-ACC PF17848.1 gi|330835541|ref|YP_004410269.1| - 0.59 10.3 0.2 0.59 10.3 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Zn-ribbon_8 PF09723.10 gi|330835541|ref|YP_004410269.1| - 2.8 8.1 7.0 62 3.8 7.0 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|330835541|ref|YP_004410269.1| - 4 7.0 7.5 24 4.5 7.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Thiolase_N PF00108.23 gi|330835542|ref|YP_004410270.1| - 4e-26 91.9 0.0 8.7e-26 90.8 0.0 1.6 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|330835542|ref|YP_004410270.1| - 9.1e-08 31.8 0.1 4.1e-06 26.5 0.0 3.0 3 1 0 3 3 3 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|330835542|ref|YP_004410270.1| - 2.6e-07 30.5 4.2 1.5e-05 24.7 1.8 2.8 1 1 0 2 2 2 2 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|330835542|ref|YP_004410270.1| - 0.027 14.3 1.0 0.26 11.1 0.1 2.7 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CsoSCA PF08936.10 gi|330835542|ref|YP_004410270.1| - 0.12 11.0 0.0 0.18 10.4 0.0 1.2 1 0 0 1 1 1 0 Carboxysome Shell Carbonic Anhydrase Peptidase_S9 PF00326.21 gi|330835543|ref|YP_004410271.1| - 3.4e-46 157.4 0.1 4.7e-46 156.9 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|330835543|ref|YP_004410271.1| - 1.7e-07 30.8 0.1 0.0029 16.9 0.0 2.6 3 0 0 3 3 3 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|330835543|ref|YP_004410271.1| - 2e-07 30.9 0.7 2.1e-05 24.3 0.8 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|330835543|ref|YP_004410271.1| - 7.5e-07 28.9 0.1 6e-06 26.0 0.1 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|330835543|ref|YP_004410271.1| - 1.1e-06 28.5 0.1 0.011 15.4 0.2 2.3 1 1 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) FSH1 PF03959.13 gi|330835543|ref|YP_004410271.1| - 0.00068 19.4 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|330835543|ref|YP_004410271.1| - 0.0019 18.9 0.0 0.003 18.2 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.16 gi|330835543|ref|YP_004410271.1| - 0.0032 17.3 0.1 0.0083 15.9 0.0 1.6 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|330835543|ref|YP_004410271.1| - 0.0034 17.5 0.0 0.0074 16.4 0.0 1.5 1 0 0 1 1 1 1 TAP-like protein DUF2920 PF11144.8 gi|330835543|ref|YP_004410271.1| - 0.055 12.6 0.0 3.3 6.8 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) BAAT_C PF08840.11 gi|330835543|ref|YP_004410271.1| - 0.055 13.4 0.2 4.5 7.1 0.0 2.1 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal DPPIV_N PF00930.21 gi|330835543|ref|YP_004410271.1| - 0.097 11.4 0.0 0.2 10.3 0.0 1.5 2 0 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region DUF5050 PF16472.5 gi|330835543|ref|YP_004410271.1| - 0.13 11.5 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5050) Abhydrolase_3 PF07859.13 gi|330835543|ref|YP_004410271.1| - 0.19 11.6 0.1 0.85 9.4 0.1 2.0 1 1 0 1 1 1 0 alpha/beta hydrolase fold COesterase PF00135.28 gi|330835543|ref|YP_004410271.1| - 0.19 10.5 1.0 0.27 10.0 1.0 1.1 1 0 0 1 1 1 0 Carboxylesterase family AMP-binding PF00501.28 gi|330835544|ref|YP_004410272.1| - 6.4e-95 318.2 0.0 7.9e-95 317.9 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330835544|ref|YP_004410272.1| - 4.4e-12 46.8 0.4 1.2e-11 45.4 0.4 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AA_permease_2 PF13520.6 gi|330835545|ref|YP_004410273.1| - 1.9e-31 109.3 60.1 2.5e-31 109.0 60.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330835545|ref|YP_004410273.1| - 3.3e-07 29.3 56.6 9.5e-07 27.8 56.5 1.7 1 1 0 1 1 1 1 Amino acid permease Sigma_reg_N PF13800.6 gi|330835545|ref|YP_004410273.1| - 0.41 11.0 0.1 0.41 11.0 0.1 3.9 3 1 1 4 4 4 0 Sigma factor regulator N-terminal Phage_holin_2_1 PF04971.12 gi|330835545|ref|YP_004410273.1| - 0.41 10.7 7.4 4.2 7.4 3.7 3.1 2 0 0 2 2 2 0 Bacteriophage P21 holin S Pro_CA PF00484.19 gi|330835546|ref|YP_004410274.1| - 0.0022 18.3 0.0 0.0033 17.7 0.0 1.4 1 1 0 1 1 1 1 Carbonic anhydrase DUF5376 PF17346.2 gi|330835546|ref|YP_004410274.1| - 0.035 14.4 0.0 0.078 13.3 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5376) 3HCDH_N PF02737.18 gi|330835547|ref|YP_004410275.1| - 3.2e-55 186.8 0.0 1.5e-54 184.6 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|330835547|ref|YP_004410275.1| - 2.9e-28 98.3 0.1 1.6e-23 83.2 0.0 2.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMP-binding PF00501.28 gi|330835548|ref|YP_004410276.1| - 4.5e-16 58.5 0.1 6.6e-16 57.9 0.1 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C_2 PF14535.6 gi|330835548|ref|YP_004410276.1| - 7.8e-15 55.0 0.5 2.3e-14 53.5 0.4 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain GH3 PF03321.13 gi|330835548|ref|YP_004410276.1| - 0.00095 18.1 0.1 0.025 13.5 0.1 2.1 2 0 0 2 2 2 2 GH3 auxin-responsive promoter OB_aCoA_assoc PF01796.17 gi|330835549|ref|YP_004410277.1| - 2e-14 53.3 0.0 3.2e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|330835549|ref|YP_004410277.1| - 1.1e-08 34.8 0.5 1.7e-08 34.2 0.5 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2688 PF10892.8 gi|330835549|ref|YP_004410277.1| - 3.8 7.1 6.3 0.23 11.0 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2688) Thiolase_N PF00108.23 gi|330835550|ref|YP_004410278.1| - 1.8e-19 70.1 0.4 5.2e-18 65.3 0.4 2.1 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|330835550|ref|YP_004410278.1| - 2e-07 30.7 0.7 5.2e-06 26.1 0.0 3.1 4 0 0 4 4 4 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|330835550|ref|YP_004410278.1| - 1.7e-05 24.6 5.2 6.7e-05 22.6 2.4 2.6 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|330835550|ref|YP_004410278.1| - 0.005 16.7 0.5 0.39 10.6 0.7 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RNA_pol PF00940.19 gi|330835550|ref|YP_004410278.1| - 0.082 11.7 0.1 0.13 11.1 0.1 1.2 1 0 0 1 1 1 0 DNA-dependent RNA polymerase ECH_1 PF00378.20 gi|330835551|ref|YP_004410279.1| - 1.2e-49 168.9 0.0 1.4e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|330835551|ref|YP_004410279.1| - 1.9e-27 96.7 0.0 1.2e-23 84.2 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_1 PF00378.20 gi|330835552|ref|YP_004410280.1| - 1e-76 257.6 0.1 1.1e-76 257.4 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|330835552|ref|YP_004410280.1| - 1.6e-39 136.3 1.1 3.7e-35 122.0 0.6 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Peptidase_S49 PF01343.18 gi|330835552|ref|YP_004410280.1| - 0.022 14.7 0.0 0.097 12.6 0.0 2.0 2 0 0 2 2 2 0 Peptidase family S49 Ribonuc_red_sm PF00268.21 gi|330835553|ref|YP_004410281.1| - 4.1e-06 26.5 2.3 6.6e-06 25.8 2.3 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain AurF PF11583.8 gi|330835553|ref|YP_004410281.1| - 5e-06 26.0 4.0 1.5e-05 24.4 0.1 2.2 2 0 0 2 2 2 1 P-aminobenzoate N-oxygenase AurF Rubrerythrin PF02915.17 gi|330835553|ref|YP_004410281.1| - 0.0007 20.0 0.1 0.0029 18.0 0.0 2.0 2 0 0 2 2 2 1 Rubrerythrin Ferritin_2 PF13668.6 gi|330835553|ref|YP_004410281.1| - 0.16 12.2 0.0 21 5.3 0.0 2.2 2 0 0 2 2 2 0 Ferritin-like domain HpcH_HpaI PF03328.14 gi|330835554|ref|YP_004410282.1| - 1.3e-29 102.9 0.0 7.3e-28 97.2 0.0 2.0 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|330835554|ref|YP_004410282.1| - 2.7e-12 46.5 0.2 1.5e-07 30.9 0.0 2.2 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold DUF3242 PF11586.8 gi|330835555|ref|YP_004410283.1| - 0.0024 17.6 0.4 0.0032 17.2 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3242) TusA PF01206.17 gi|330835556|ref|YP_004410284.1| - 1.8e-16 59.7 0.2 4.6e-16 58.4 0.1 1.8 2 0 0 2 2 2 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|330835556|ref|YP_004410284.1| - 0.033 14.1 0.0 0.081 12.8 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) PepSY_2 PF13670.6 gi|330835557|ref|YP_004410285.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain DrsE PF02635.15 gi|330835558|ref|YP_004410286.1| - 1.3e-05 25.5 0.0 1.4e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Lactonase PF10282.9 gi|330835559|ref|YP_004410287.1| - 9.7e-06 25.1 0.0 0.043 13.1 0.0 2.9 1 1 2 3 3 3 2 Lactonase, 7-bladed beta-propeller ANAPC4_WD40 PF12894.7 gi|330835559|ref|YP_004410287.1| - 0.027 14.8 0.0 1.6 9.1 0.0 3.1 2 1 1 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Pilin_N PF07790.11 gi|330835559|ref|YP_004410287.1| - 0.047 14.6 1.0 0.12 13.3 1.0 1.7 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Cytochrom_D1 PF02239.16 gi|330835559|ref|YP_004410287.1| - 0.083 11.4 0.0 11 4.4 0.0 2.4 2 1 0 2 2 2 0 Cytochrome D1 heme domain DUF4307 PF14155.6 gi|330835559|ref|YP_004410287.1| - 0.089 12.6 0.1 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4307) DUF2371 PF10177.9 gi|330835559|ref|YP_004410287.1| - 0.099 12.8 0.1 0.19 11.9 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2371) Tir_receptor_C PF07489.11 gi|330835559|ref|YP_004410287.1| - 0.13 12.2 4.0 0.22 11.5 4.0 1.2 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) C-terminus DUF4064 PF13273.6 gi|330835559|ref|YP_004410287.1| - 0.3 11.4 6.3 0.045 14.0 2.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4064) DUF3439 PF11921.8 gi|330835559|ref|YP_004410287.1| - 8.8 6.3 14.5 0.17 11.8 6.5 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3439) DoxD PF04173.13 gi|330835561|ref|YP_004410289.1| - 9.2e-50 168.8 10.1 1.2e-49 168.5 10.1 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|330835561|ref|YP_004410289.1| - 3.3e-05 24.4 4.4 3.3e-05 24.4 4.4 2.1 2 1 0 2 2 2 1 DoxX TusA PF01206.17 gi|330835562|ref|YP_004410290.1| - 7.3e-20 70.6 0.1 8.3e-20 70.4 0.1 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|330835562|ref|YP_004410290.1| - 0.018 14.9 0.0 0.026 14.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Sulf_transp PF04143.14 gi|330835563|ref|YP_004410291.1| - 1.5e-61 208.7 26.8 2e-61 208.2 26.8 1.2 1 0 0 1 1 1 1 Sulphur transport DUF2231 PF09990.9 gi|330835563|ref|YP_004410291.1| - 0.17 12.3 10.4 0.11 12.9 4.3 3.4 3 1 1 4 4 4 0 Predicted membrane protein (DUF2231) DUF4027 PF13219.6 gi|330835563|ref|YP_004410291.1| - 0.25 11.2 3.2 6 6.8 0.2 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4027) HCMV_UL124 PF17609.2 gi|330835564|ref|YP_004410292.1| - 0.039 14.1 0.0 0.056 13.6 0.0 1.3 1 1 0 1 1 1 0 Family of unknown function DUF2370 PF10176.9 gi|330835564|ref|YP_004410292.1| - 0.077 12.6 0.1 0.077 12.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2370) DrsE_2 PF13686.6 gi|330835565|ref|YP_004410293.1| - 4.4e-07 29.9 0.9 0.0064 16.4 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|330835565|ref|YP_004410293.1| - 0.00027 21.3 0.0 0.00031 21.1 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family mIF3 PF14877.6 gi|330835566|ref|YP_004410294.1| - 0.026 14.2 0.0 0.031 14.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial translation initiation factor Aldedh PF00171.22 gi|330835567|ref|YP_004410295.1| - 7.9e-128 426.9 0.0 1.1e-127 426.4 0.0 1.1 1 0 0 1 1 1 1 Aldehyde dehydrogenase family Med28 PF11594.8 gi|330835567|ref|YP_004410295.1| - 0.025 14.7 0.0 0.047 13.8 0.0 1.4 1 0 0 1 1 1 0 Mediator complex subunit 28 PDDEXK_1 PF12705.7 gi|330835568|ref|YP_004410296.1| - 4.2e-07 30.1 0.1 7.4e-07 29.3 0.1 1.4 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|330835568|ref|YP_004410296.1| - 0.00033 20.8 0.0 0.00054 20.1 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|330835568|ref|YP_004410296.1| - 0.0099 16.2 0.0 0.037 14.4 0.0 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF2371 PF10177.9 gi|330835570|ref|YP_004410298.1| - 0.023 14.8 2.5 2.5 8.3 0.5 2.1 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DUF4405 PF14358.6 gi|330835570|ref|YP_004410298.1| - 0.19 12.3 0.6 0.19 12.3 0.6 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF2627 PF11118.8 gi|330835570|ref|YP_004410298.1| - 0.22 12.1 4.2 8.9 7.0 0.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2627) DUF3592 PF12158.8 gi|330835570|ref|YP_004410298.1| - 0.27 11.3 0.0 0.27 11.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3592) DUF3040 PF11239.8 gi|330835570|ref|YP_004410298.1| - 0.28 11.5 6.9 5.7 7.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF945 PF06097.11 gi|330835570|ref|YP_004410298.1| - 0.77 8.8 2.4 12 4.9 1.3 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF945) tRNA_anti-like PF12869.7 gi|330835570|ref|YP_004410298.1| - 1.6 8.4 6.6 0.68 9.5 0.1 2.3 1 1 0 2 2 2 0 tRNA_anti-like DUF202 PF02656.15 gi|330835570|ref|YP_004410298.1| - 9 6.8 6.5 63 4.1 6.5 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DoxA PF07680.11 gi|330835571|ref|YP_004410299.1| - 5.7e-35 120.1 0.3 6.8e-35 119.9 0.3 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA GBS_Bsp-like PF08481.10 gi|330835571|ref|YP_004410299.1| - 0.056 13.6 0.3 0.086 13.0 0.3 1.3 1 0 0 1 1 1 0 GBS Bsp-like repeat DoxD PF04173.13 gi|330835572|ref|YP_004410300.1| - 9.7e-66 220.8 0.9 1.1e-65 220.6 0.9 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|330835572|ref|YP_004410300.1| - 4.9e-08 33.5 7.2 4.9e-08 33.5 7.2 2.0 2 1 0 2 2 2 1 DoxX Oxidored_molyb PF00174.19 gi|330835573|ref|YP_004410301.1| - 9.7e-35 119.7 0.0 1.2e-34 119.4 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain AA_permease_2 PF13520.6 gi|330835574|ref|YP_004410302.1| - 5.9e-23 81.4 51.5 5.9e-23 81.4 51.5 2.0 1 1 1 2 2 2 1 Amino acid permease AhpC-TSA PF00578.21 gi|330835576|ref|YP_004410304.1| - 6.7e-37 126.2 0.1 7.8e-37 126.0 0.1 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|330835576|ref|YP_004410304.1| - 1.8e-29 102.4 0.1 2.1e-29 102.1 0.1 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|330835576|ref|YP_004410304.1| - 0.00012 22.0 0.1 0.00016 21.6 0.1 1.3 1 0 0 1 1 1 1 SCO1/SenC AhpC-TSA_2 PF13911.6 gi|330835576|ref|YP_004410304.1| - 0.0025 17.9 0.0 2.2 8.4 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA antioxidant enzyme Glyco_tranf_2_3 PF13641.6 gi|330835577|ref|YP_004410305.1| - 9.3e-26 91.1 0.0 1.3e-25 90.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|330835577|ref|YP_004410305.1| - 5.9e-17 62.0 0.0 1.1e-16 61.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|330835577|ref|YP_004410305.1| - 4.5e-13 49.0 0.0 9.6e-13 48.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|330835577|ref|YP_004410305.1| - 9.2e-10 38.8 0.4 2.3e-09 37.5 0.4 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|330835577|ref|YP_004410305.1| - 0.0028 17.2 0.0 0.0038 16.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DUF4214 PF13946.6 gi|330835577|ref|YP_004410305.1| - 0.08 13.0 0.0 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4214) Voltage_CLC PF00654.20 gi|330835578|ref|YP_004410306.1| - 1.9e-88 297.1 31.4 1.9e-88 297.1 31.4 2.0 2 0 0 2 2 2 1 Voltage gated chloride channel CBS PF00571.28 gi|330835578|ref|YP_004410306.1| - 1.3e-17 64.0 0.2 1.5e-07 31.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain Rhodanese PF00581.20 gi|330835579|ref|YP_004410307.1| - 9.1e-26 90.5 0.0 5.1e-17 62.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain DUF442 PF04273.13 gi|330835579|ref|YP_004410307.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Putative phosphatase (DUF442) DUF87 PF01935.17 gi|330835580|ref|YP_004410308.1| - 1.4e-15 58.0 0.1 2e-15 57.5 0.1 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|330835580|ref|YP_004410308.1| - 1.3e-08 34.0 0.1 0.0014 17.3 0.0 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|330835580|ref|YP_004410308.1| - 0.00024 20.2 0.0 0.007 15.3 0.0 1.9 1 1 0 2 2 2 1 AAA-like domain AAA_22 PF13401.6 gi|330835580|ref|YP_004410308.1| - 0.00063 20.0 0.0 0.0036 17.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|330835580|ref|YP_004410308.1| - 0.0026 17.4 0.0 0.0038 16.9 0.0 1.4 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.9 gi|330835580|ref|YP_004410308.1| - 0.0073 15.3 0.0 0.04 12.8 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|330835580|ref|YP_004410308.1| - 0.012 14.6 0.0 0.02 13.9 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB ATPase_2 PF01637.18 gi|330835580|ref|YP_004410308.1| - 0.019 14.9 0.1 0.036 14.0 0.1 1.5 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|330835580|ref|YP_004410308.1| - 0.046 13.8 0.0 0.098 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|330835580|ref|YP_004410308.1| - 0.053 12.8 0.0 0.086 12.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|330835580|ref|YP_004410308.1| - 0.055 13.9 0.0 0.23 11.9 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.20 gi|330835580|ref|YP_004410308.1| - 0.082 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase TusA PF01206.17 gi|330835581|ref|YP_004410309.1| - 9.6e-16 57.4 0.0 1.1e-15 57.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA Pyr_redox_2 PF07992.14 gi|330835582|ref|YP_004410310.1| - 9.7e-20 71.0 0.1 1.5e-18 67.1 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|330835582|ref|YP_004410310.1| - 9.2e-05 22.5 0.3 0.11 12.5 0.1 2.4 1 1 1 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|330835582|ref|YP_004410310.1| - 0.00025 20.0 0.0 0.00059 18.8 0.0 1.6 2 0 0 2 2 2 1 Tryptophan halogenase DAO PF01266.24 gi|330835582|ref|YP_004410310.1| - 0.00054 19.6 0.1 0.052 13.1 0.1 2.8 2 1 1 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|330835582|ref|YP_004410310.1| - 0.00078 18.6 0.1 0.82 8.7 0.4 2.6 3 0 0 3 3 3 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|330835582|ref|YP_004410310.1| - 0.038 14.2 0.0 0.089 13.0 0.0 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 40S_S4_C PF16121.5 gi|330835582|ref|YP_004410310.1| - 0.16 11.7 0.7 1.2 8.8 0.0 2.5 3 0 0 3 3 3 0 40S ribosomal protein S4 C-terminus Pyr_redox PF00070.27 gi|330835582|ref|YP_004410310.1| - 0.51 10.9 3.5 40 4.9 0.1 3.5 3 1 1 4 4 4 0 Pyridine nucleotide-disulphide oxidoreductase DrsE PF02635.15 gi|330835583|ref|YP_004410311.1| - 5.1e-10 39.8 0.0 5.5e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|330835583|ref|YP_004410311.1| - 5.5e-06 26.3 0.2 0.025 14.5 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DUF1641 PF07849.11 gi|330835584|ref|YP_004410312.1| - 8.4e-14 51.2 2.2 1.3e-13 50.6 0.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) ADH_zinc_N_2 PF13602.6 gi|330835584|ref|YP_004410312.1| - 5.3e-07 30.7 0.0 1.8 9.6 0.0 3.4 2 1 1 3 3 3 3 Zinc-binding dehydrogenase AbbA_antirepres PF14156.6 gi|330835584|ref|YP_004410312.1| - 0.00034 20.4 3.4 0.24 11.3 0.2 3.6 3 0 0 3 3 3 2 Antirepressor AbbA DUF2777 PF10949.8 gi|330835584|ref|YP_004410312.1| - 0.1 12.3 1.5 23 4.6 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2777) DUF4795 PF16043.5 gi|330835584|ref|YP_004410312.1| - 0.34 10.5 7.6 2.9 7.4 0.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4795) DUF5617 PF18493.1 gi|330835584|ref|YP_004410312.1| - 1.2 9.3 3.9 5 7.3 0.2 3.4 2 1 2 4 4 4 0 Domain of unknown function (DUF5617) ABC_tran PF00005.27 gi|330835585|ref|YP_004410313.1| - 1.3e-22 80.8 0.0 2.1e-22 80.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|330835585|ref|YP_004410313.1| - 1.1e-09 38.5 0.0 3.9e-06 26.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330835585|ref|YP_004410313.1| - 0.00065 19.2 0.1 0.056 12.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|330835585|ref|YP_004410313.1| - 0.0066 16.2 0.0 0.011 15.5 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|330835585|ref|YP_004410313.1| - 0.023 15.0 0.0 0.048 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330835585|ref|YP_004410313.1| - 0.03 14.1 0.2 0.053 13.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|330835585|ref|YP_004410313.1| - 0.036 14.2 0.0 0.051 13.7 0.0 1.3 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_15 PF13175.6 gi|330835585|ref|YP_004410313.1| - 0.041 13.6 0.0 2.5 7.7 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|330835585|ref|YP_004410313.1| - 0.056 13.9 0.0 0.15 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|330835585|ref|YP_004410313.1| - 0.089 13.2 0.1 0.18 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain MukB PF04310.12 gi|330835585|ref|YP_004410313.1| - 0.09 12.6 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 MukB N-terminal AAA_14 PF13173.6 gi|330835585|ref|YP_004410313.1| - 0.099 12.7 0.0 1.7 8.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|330835585|ref|YP_004410313.1| - 0.11 11.2 0.1 0.38 9.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|330835585|ref|YP_004410313.1| - 0.12 11.9 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|330835586|ref|YP_004410314.1| - 6e-08 32.4 21.6 6e-08 32.4 21.6 1.6 1 1 1 2 2 2 1 ABC-2 type transporter DUF5518 PF17647.1 gi|330835587|ref|YP_004410315.1| - 0.12 12.5 8.5 0.17 12.0 8.5 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5518) PCEMA1 PF07418.11 gi|330835587|ref|YP_004410315.1| - 0.16 11.4 0.0 0.16 11.4 0.0 2.4 2 1 1 3 3 3 0 Acidic phosphoprotein precursor PCEMA1 CAAD PF14159.6 gi|330835587|ref|YP_004410315.1| - 0.17 11.7 2.4 0.91 9.4 2.4 2.1 1 1 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase SNARE_assoc PF09335.11 gi|330835587|ref|YP_004410315.1| - 0.46 11.0 6.3 1.6 9.2 0.5 2.1 1 1 1 2 2 2 0 SNARE associated Golgi protein DUF2207 PF09972.9 gi|330835587|ref|YP_004410315.1| - 1.6 7.4 6.3 0.27 9.9 3.0 1.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) ABC2_membrane_3 PF12698.7 gi|330835587|ref|YP_004410315.1| - 2.5 7.1 13.7 1.8 7.6 12.1 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Gp58 PF07902.11 gi|330835588|ref|YP_004410316.1| - 0.073 11.4 0.1 0.079 11.2 0.1 1.0 1 0 0 1 1 1 0 gp58-like protein Peptidase_M32 PF02074.15 gi|330835589|ref|YP_004410317.1| - 2.6e-148 494.8 0.0 3e-148 494.6 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DUF711 PF05167.12 gi|330835590|ref|YP_004410318.1| - 4.7e-116 388.0 0.1 5.7e-116 387.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) ACT_6 PF13740.6 gi|330835591|ref|YP_004410319.1| - 1.8e-16 59.9 0.3 2e-16 59.7 0.3 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|330835591|ref|YP_004410319.1| - 1.6e-10 40.6 0.6 2e-10 40.3 0.6 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|330835591|ref|YP_004410319.1| - 2.1e-06 27.4 0.9 3.4e-06 26.7 0.9 1.4 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|330835591|ref|YP_004410319.1| - 0.0003 21.3 0.8 0.00039 21.0 0.8 1.2 1 0 0 1 1 1 1 ACT domain Abhydrolase_2 PF02230.16 gi|330835592|ref|YP_004410320.1| - 3e-06 27.2 0.2 0.00023 21.0 0.0 2.7 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Peptidase_S9 PF00326.21 gi|330835592|ref|YP_004410320.1| - 1.3e-05 24.8 0.0 3.1e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family FSH1 PF03959.13 gi|330835592|ref|YP_004410320.1| - 0.00024 20.8 0.0 0.00063 19.5 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Hydrolase_4 PF12146.8 gi|330835592|ref|YP_004410320.1| - 0.0057 15.9 0.0 0.87 8.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|330835592|ref|YP_004410320.1| - 0.035 13.7 0.0 1.5 8.4 0.0 2.1 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|330835592|ref|YP_004410320.1| - 0.095 13.3 0.0 0.21 12.1 0.0 1.5 1 1 1 2 2 2 0 Alpha/beta hydrolase family Esterase PF00756.20 gi|330835592|ref|YP_004410320.1| - 0.12 12.0 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 Putative esterase Lipase_3 PF01764.25 gi|330835592|ref|YP_004410320.1| - 0.19 11.6 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) BAAT_C PF08840.11 gi|330835592|ref|YP_004410320.1| - 0.21 11.5 0.1 3.7 7.4 0.0 2.0 1 1 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal EamA PF00892.20 gi|330835593|ref|YP_004410321.1| - 6.6e-33 113.8 35.6 6e-22 78.3 15.3 2.5 2 1 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|330835593|ref|YP_004410321.1| - 5.9e-05 22.5 12.5 0.00018 21.0 12.5 1.9 1 1 0 1 1 1 1 Triose-phosphate Transporter family Phage_holin_2_4 PF16082.5 gi|330835593|ref|YP_004410321.1| - 1.4 8.7 4.0 2 8.2 1.3 2.3 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Fer4_7 PF12838.7 gi|330835594|ref|YP_004410322.1| - 5.2e-08 33.3 5.5 0.0024 18.4 1.2 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835594|ref|YP_004410322.1| - 1.9e-07 31.1 6.9 2.5e-07 30.7 6.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|330835594|ref|YP_004410322.1| - 7.2e-06 26.1 1.8 0.09 12.9 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|330835594|ref|YP_004410322.1| - 1.7e-05 24.9 0.3 2.5e-05 24.4 0.3 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_9 PF13187.6 gi|330835594|ref|YP_004410322.1| - 2.2e-05 24.5 6.3 3.1e-05 24.0 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835594|ref|YP_004410322.1| - 2.7e-05 24.0 11.5 0.00033 20.6 2.3 2.5 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330835594|ref|YP_004410322.1| - 2.9e-05 24.0 9.8 0.02 15.0 2.4 2.7 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.6 gi|330835594|ref|YP_004410322.1| - 9.4e-05 22.5 2.0 0.00012 22.2 2.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835594|ref|YP_004410322.1| - 0.00032 21.1 2.2 0.44 11.0 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835594|ref|YP_004410322.1| - 0.00049 21.0 5.3 0.47 11.4 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|330835594|ref|YP_004410322.1| - 0.00075 19.7 0.4 0.00092 19.4 0.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835594|ref|YP_004410322.1| - 0.0044 16.8 14.0 0.046 13.6 1.8 3.8 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835594|ref|YP_004410322.1| - 0.044 14.7 12.3 0.36 11.9 1.3 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330835594|ref|YP_004410322.1| - 0.11 13.0 10.0 2.2 9.0 2.0 2.5 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|330835594|ref|YP_004410322.1| - 0.17 11.7 9.3 0.41 10.4 3.0 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DAO PF01266.24 gi|330835595|ref|YP_004410323.1| - 4.7e-14 52.7 0.1 8.3e-07 28.9 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|330835595|ref|YP_004410323.1| - 7e-12 45.4 0.1 1.1e-11 44.7 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|330835595|ref|YP_004410323.1| - 3.6e-11 42.8 0.2 6.3e-11 42.0 0.2 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|330835595|ref|YP_004410323.1| - 3.7e-08 33.0 0.1 6.6e-05 22.3 0.1 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|330835595|ref|YP_004410323.1| - 5.9e-08 31.8 1.9 3.1e-06 26.2 0.6 2.9 3 0 0 3 3 3 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|330835595|ref|YP_004410323.1| - 6e-06 25.7 0.7 5.8e-05 22.5 0.7 2.1 1 1 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|330835595|ref|YP_004410323.1| - 6.4e-06 26.3 0.5 2.2e-05 24.6 0.5 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|330835595|ref|YP_004410323.1| - 9.1e-06 25.0 0.4 9.1e-06 25.0 0.4 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|330835595|ref|YP_004410323.1| - 1.4e-05 24.5 0.4 0.00047 19.5 0.4 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|330835595|ref|YP_004410323.1| - 3.4e-05 23.2 0.4 0.0001 21.7 0.4 1.7 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|330835595|ref|YP_004410323.1| - 0.00017 20.8 0.3 0.0004 19.5 0.3 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|330835595|ref|YP_004410323.1| - 0.001 18.4 0.1 0.0085 15.4 0.1 2.1 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|330835595|ref|YP_004410323.1| - 0.0013 19.2 0.9 0.1 13.2 0.1 3.3 3 1 1 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|330835595|ref|YP_004410323.1| - 0.12 11.2 0.3 9.4 5.0 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase ETF_alpha PF00766.19 gi|330835596|ref|YP_004410324.1| - 1.7e-32 111.3 0.2 5.3e-32 109.7 0.2 1.9 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|330835596|ref|YP_004410324.1| - 2.8e-13 50.2 0.0 4.8e-13 49.4 0.0 1.4 1 1 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|330835597|ref|YP_004410325.1| - 3.6e-34 118.2 1.5 5e-34 117.8 1.5 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PIN PF01850.21 gi|330835599|ref|YP_004410327.1| - 1.2e-08 35.4 0.9 1.5e-08 35.2 0.9 1.1 1 0 0 1 1 1 1 PIN domain DNA_pol_A_exo1 PF01612.20 gi|330835599|ref|YP_004410327.1| - 0.0014 18.3 0.1 0.0018 18.0 0.1 1.2 1 0 0 1 1 1 1 3'-5' exonuclease DUF5572 PF17733.1 gi|330835599|ref|YP_004410327.1| - 0.031 14.1 0.7 5.1 7.0 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5572) TTRAP PF14203.6 gi|330835599|ref|YP_004410327.1| - 0.1 12.6 2.0 8.4 6.5 0.1 3.0 2 1 1 3 3 3 0 Putative tranposon-transfer assisting protein DUF1827 PF08860.10 gi|330835602|ref|YP_004410330.1| - 0.11 12.7 0.1 0.21 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1827) Tetraspanin PF00335.20 gi|330835603|ref|YP_004410331.1| - 0.59 9.8 3.6 0.64 9.7 3.6 1.2 1 0 0 1 1 1 0 Tetraspanin family PMP1_2 PF08114.11 gi|330835603|ref|YP_004410331.1| - 1.7 8.4 9.1 4.5 7.1 0.2 3.1 3 0 0 3 3 3 0 ATPase proteolipid family DUF1404 PF07185.11 gi|330835604|ref|YP_004410332.1| - 1.6e-48 164.7 12.8 1.8e-48 164.5 12.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) DUF1404 PF07185.11 gi|330835605|ref|YP_004410333.1| - 4.5e-40 137.1 14.8 5.3e-40 136.9 14.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Caa3_CtaG PF09678.10 gi|330835605|ref|YP_004410333.1| - 0.52 9.7 15.0 0.027 13.9 5.2 2.5 1 1 1 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Ctr PF04145.15 gi|330835605|ref|YP_004410333.1| - 9.5 6.8 8.2 0.27 11.8 0.8 2.1 2 1 0 2 2 2 0 Ctr copper transporter family COX1 PF00115.20 gi|330835606|ref|YP_004410334.1| - 9.2e-117 390.5 59.6 9.2e-117 390.5 59.6 3.1 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|330835606|ref|YP_004410334.1| - 1.8e-16 60.8 15.2 1.8e-16 60.8 15.2 2.9 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III Sec62 PF03839.16 gi|330835606|ref|YP_004410334.1| - 8.8 5.8 6.1 47 3.4 6.1 2.3 1 0 0 1 1 1 0 Translocation protein Sec62 SoxE PF06525.11 gi|330835607|ref|YP_004410335.1| - 3.2e-67 224.7 3.4 4.2e-67 224.3 3.4 1.2 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain Cu-oxidase_2 PF07731.14 gi|330835607|ref|YP_004410335.1| - 0.0012 18.6 0.0 0.27 11.0 0.0 2.4 2 1 0 2 2 2 2 Multicopper oxidase Pilin_N PF07790.11 gi|330835607|ref|YP_004410335.1| - 1.1 10.3 6.8 1.9 9.5 6.8 1.6 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Rieske PF00355.26 gi|330835608|ref|YP_004410336.1| - 2.5e-12 46.6 0.1 4.5e-12 45.7 0.1 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|330835608|ref|YP_004410336.1| - 0.023 14.5 0.0 0.046 13.6 0.0 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.6 gi|330835609|ref|YP_004410337.1| - 1.2e-30 106.7 5.2 1.2e-30 106.7 5.2 2.3 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|330835609|ref|YP_004410337.1| - 3.2e-23 82.5 12.5 3.2e-23 82.5 12.5 2.9 4 0 0 4 4 4 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|330835609|ref|YP_004410337.1| - 0.0027 18.0 1.7 0.0027 18.0 1.7 3.4 3 2 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD COX2 PF00116.20 gi|330835610|ref|YP_004410338.1| - 5.2e-14 52.2 0.9 5.3e-13 48.9 0.1 2.1 1 1 1 2 2 2 2 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|330835610|ref|YP_004410338.1| - 8.9e-06 25.8 0.0 1.1e-05 25.5 0.0 1.3 1 1 0 1 1 1 1 Cupredoxin-like domain DUF2436 PF10365.9 gi|330835610|ref|YP_004410338.1| - 0.097 12.4 1.4 0.25 11.1 1.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF2436) SirB PF04247.12 gi|330835611|ref|YP_004410339.1| - 0.012 15.7 4.1 0.012 15.7 4.1 1.9 2 0 0 2 2 2 0 Invasion gene expression up-regulator, SirB Tim17 PF02466.19 gi|330835611|ref|YP_004410339.1| - 0.033 14.6 0.6 0.045 14.1 0.6 1.2 1 0 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family DUF389 PF04087.14 gi|330835611|ref|YP_004410339.1| - 0.33 11.0 5.9 0.08 13.0 1.3 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF389) DUF373 PF04123.13 gi|330835611|ref|YP_004410339.1| - 3.1 7.2 10.9 3.6 6.9 10.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4407 PF14362.6 gi|330835611|ref|YP_004410339.1| - 6.7 6.0 11.3 0.14 11.5 3.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) ATP-synt_8 PF00895.20 gi|330835611|ref|YP_004410339.1| - 8.4 6.9 11.6 0.11 13.0 2.2 2.5 2 1 1 3 3 3 0 ATP synthase protein 8 DAD PF02109.16 gi|330835612|ref|YP_004410340.1| - 0.089 13.1 0.2 0.17 12.2 0.2 1.5 1 0 0 1 1 1 0 DAD family DUF4131 PF13567.6 gi|330835612|ref|YP_004410340.1| - 0.92 9.1 5.4 7.9 6.1 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) EamA PF00892.20 gi|330835613|ref|YP_004410341.1| - 1.8e-23 83.2 21.8 1.6e-15 57.5 5.0 2.5 2 1 0 2 2 2 2 EamA-like transporter family SpoIIIAC PF06686.11 gi|330835613|ref|YP_004410341.1| - 0.083 13.1 0.6 0.56 10.4 0.0 2.8 3 0 0 3 3 3 0 Stage III sporulation protein AC/AD protein family DUF2048 PF09752.9 gi|330835613|ref|YP_004410341.1| - 0.25 10.4 0.2 0.36 9.9 0.2 1.1 1 0 0 1 1 1 0 Abhydrolase domain containing 18 MFS_1 PF07690.16 gi|330835614|ref|YP_004410342.1| - 7.2e-49 166.6 40.9 1.3e-48 165.7 40.9 1.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|330835614|ref|YP_004410342.1| - 1.7e-14 53.6 11.7 1.7e-14 53.6 11.7 2.4 2 1 0 2 2 2 2 Sugar (and other) transporter DUF423 PF04241.15 gi|330835614|ref|YP_004410342.1| - 1.4 9.1 9.3 0.2 11.9 0.3 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF423) TPP_enzyme_C PF02775.21 gi|330835616|ref|YP_004410344.1| - 7.4e-22 77.8 0.1 1.1e-21 77.2 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E1_dh PF00676.20 gi|330835616|ref|YP_004410344.1| - 0.013 14.5 0.2 0.019 14.0 0.2 1.2 1 0 0 1 1 1 0 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|330835616|ref|YP_004410344.1| - 0.025 13.8 0.1 0.043 13.0 0.1 1.4 1 0 0 1 1 1 0 1-deoxy-D-xylulose-5-phosphate synthase CGGC PF08821.11 gi|330835616|ref|YP_004410344.1| - 0.061 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 CGGC domain POR_N PF01855.19 gi|330835617|ref|YP_004410345.1| - 1.4e-66 224.6 0.6 1.9e-66 224.1 0.6 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|330835617|ref|YP_004410345.1| - 4.8e-24 84.6 0.0 1.2e-23 83.4 0.0 1.7 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|330835617|ref|YP_004410345.1| - 2.2e-08 34.0 0.0 4.6e-08 33.0 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.18 gi|330835617|ref|YP_004410345.1| - 0.013 15.1 0.1 0.038 13.6 0.1 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SHOCT PF09851.9 gi|330835617|ref|YP_004410345.1| - 0.04 13.7 1.3 0.1 12.4 0.2 2.1 2 0 0 2 2 2 0 Short C-terminal domain Asparaginase_C PF17763.1 gi|330835617|ref|YP_004410345.1| - 0.11 12.7 0.1 2.5 8.3 0.0 2.7 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain Fer4 PF00037.27 gi|330835618|ref|YP_004410346.1| - 3.9e-12 45.5 14.7 1.6e-08 34.0 5.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835618|ref|YP_004410346.1| - 8.5e-12 45.0 9.0 1.2e-11 44.5 9.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835618|ref|YP_004410346.1| - 7e-09 35.4 12.9 1.4e-05 25.0 3.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330835618|ref|YP_004410346.1| - 1.1e-08 35.0 22.3 1.2e-06 28.5 11.6 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835618|ref|YP_004410346.1| - 1.5e-08 34.7 8.3 1.8e-08 34.4 8.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|330835618|ref|YP_004410346.1| - 2.5e-08 34.4 22.9 1.7e-07 31.7 13.1 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835618|ref|YP_004410346.1| - 3.8e-08 34.1 10.2 0.00016 22.6 2.5 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|330835618|ref|YP_004410346.1| - 1.9e-07 30.7 13.1 0.00027 20.8 3.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|330835618|ref|YP_004410346.1| - 7.1e-05 23.0 13.3 0.0043 17.4 4.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835618|ref|YP_004410346.1| - 0.00011 22.9 18.5 0.018 16.0 2.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|330835618|ref|YP_004410346.1| - 0.00095 19.6 12.8 0.17 12.3 13.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330835618|ref|YP_004410346.1| - 0.0022 18.5 10.9 0.23 12.0 2.1 2.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_17 PF13534.6 gi|330835618|ref|YP_004410346.1| - 0.0036 17.8 10.8 0.27 11.8 2.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|330835618|ref|YP_004410346.1| - 0.071 14.0 13.1 0.19 12.6 3.0 2.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|330835618|ref|YP_004410346.1| - 0.091 13.0 9.6 1.3 9.3 0.9 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|330835618|ref|YP_004410346.1| - 0.24 12.2 11.8 5.5 7.8 3.7 3.0 2 1 1 3 3 3 0 4Fe-4S single cluster domain POR PF01558.18 gi|330835619|ref|YP_004410347.1| - 1.2e-26 93.8 0.0 1.5e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4_11 PF13247.6 gi|330835620|ref|YP_004410348.1| - 2.8e-21 75.5 7.7 2.8e-21 75.5 7.7 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|330835620|ref|YP_004410348.1| - 2.2e-16 58.9 30.6 7.7e-09 35.0 1.7 4.9 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|330835620|ref|YP_004410348.1| - 1e-14 53.8 29.9 9.8e-07 28.6 1.2 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330835620|ref|YP_004410348.1| - 4e-12 46.5 25.5 2.1e-05 25.0 10.0 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835620|ref|YP_004410348.1| - 9.6e-12 44.9 21.6 1.8e-05 24.8 10.5 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835620|ref|YP_004410348.1| - 1.7e-10 40.4 28.7 1.2e-06 28.3 1.2 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|330835620|ref|YP_004410348.1| - 4.3e-09 36.4 29.9 8e-07 29.1 8.4 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|330835620|ref|YP_004410348.1| - 4.7e-08 33.8 23.0 0.077 13.9 1.8 4.3 3 1 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|330835620|ref|YP_004410348.1| - 5.5e-07 29.6 25.7 7.6e-05 22.8 9.9 2.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|330835620|ref|YP_004410348.1| - 4.9e-05 23.5 32.8 0.026 15.0 3.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835620|ref|YP_004410348.1| - 0.0017 19.1 40.0 0.12 13.4 2.2 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|330835620|ref|YP_004410348.1| - 0.0017 19.0 14.7 0.012 16.4 0.2 3.7 4 0 0 4 4 4 2 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|330835620|ref|YP_004410348.1| - 0.0044 17.4 27.6 2.5 8.6 10.5 3.9 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|330835620|ref|YP_004410348.1| - 0.0056 17.2 23.7 1 10.0 0.2 4.4 2 1 3 5 5 5 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|330835620|ref|YP_004410348.1| - 0.42 11.2 26.5 0.81 10.3 7.5 3.9 2 2 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DmsC PF04976.12 gi|330835620|ref|YP_004410348.1| - 0.56 9.6 19.1 0.81 9.1 11.1 2.5 1 1 1 2 2 2 0 DMSO reductase anchor subunit (DmsC) Fer4_22 PF17179.4 gi|330835620|ref|YP_004410348.1| - 0.72 10.7 15.6 0.25 12.2 1.7 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain SRI PF08236.11 gi|330835621|ref|YP_004410349.1| - 0.021 15.0 0.0 0.039 14.1 0.0 1.5 1 1 0 1 1 1 0 SRI (Set2 Rpb1 interacting) domain Na_Ca_ex PF01699.24 gi|330835622|ref|YP_004410350.1| - 3.7e-09 36.7 32.5 1.4e-05 25.1 11.2 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein HTH_45 PF14947.6 gi|330835623|ref|YP_004410351.1| - 5.2e-16 58.4 1.4 1e-14 54.3 0.8 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix HEAT_2 PF13646.6 gi|330835624|ref|YP_004410352.1| - 1.5e-07 31.7 0.1 1.7e-07 31.6 0.1 1.0 1 0 0 1 1 1 1 HEAT repeats HEAT PF02985.22 gi|330835624|ref|YP_004410352.1| - 4.7e-07 29.5 0.0 0.0089 16.2 0.0 2.1 2 0 0 2 2 2 2 HEAT repeat HEAT_PBS PF03130.16 gi|330835624|ref|YP_004410352.1| - 0.00014 22.2 0.1 0.00035 21.0 0.0 1.6 2 0 0 2 2 2 1 PBS lyase HEAT-like repeat FAD_binding_5 PF00941.21 gi|330835626|ref|YP_004410354.1| - 1.3e-37 129.1 0.0 2e-37 128.6 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|330835626|ref|YP_004410354.1| - 2.5e-21 75.8 0.0 4.3e-21 75.0 0.0 1.4 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain Fer2_2 PF01799.20 gi|330835627|ref|YP_004410355.1| - 3.4e-26 91.1 0.1 3.4e-26 91.1 0.1 1.8 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|330835627|ref|YP_004410355.1| - 2.3e-05 24.2 0.4 2.3e-05 24.2 0.4 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|330835627|ref|YP_004410355.1| - 8.5e-05 22.5 1.5 8.5e-05 22.5 1.5 1.7 1 1 1 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Ald_Xan_dh_C2 PF02738.18 gi|330835628|ref|YP_004410356.1| - 5.4e-159 530.2 0.3 6.4e-159 529.9 0.3 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330835628|ref|YP_004410356.1| - 1.2e-24 86.7 0.0 3.2e-24 85.4 0.0 1.7 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Rubrerythrin PF02915.17 gi|330835630|ref|YP_004410358.1| - 7.3e-25 88.0 1.1 1.1e-24 87.4 1.1 1.3 1 1 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|330835630|ref|YP_004410358.1| - 2.6e-10 40.4 0.4 7.4e-05 22.7 0.0 2.1 1 1 1 2 2 2 2 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|330835630|ref|YP_004410358.1| - 0.0081 15.0 0.0 0.019 13.8 0.0 1.6 1 1 1 2 2 2 1 Fatty acid desaturase CCG PF02754.16 gi|330835631|ref|YP_004410359.1| - 2.6e-16 59.6 2.5 2.2e-11 43.8 0.0 2.6 3 0 0 3 3 3 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|330835631|ref|YP_004410359.1| - 0.025 15.0 0.1 0.062 13.8 0.1 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF3501 PF12007.8 gi|330835632|ref|YP_004410360.1| - 1.3e-52 178.5 4.6 1.4e-52 178.4 4.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) Abhydrolase_3 PF07859.13 gi|330835633|ref|YP_004410361.1| - 7.5e-68 228.5 0.0 9.2e-68 228.2 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Say1_Mug180 PF10340.9 gi|330835633|ref|YP_004410361.1| - 3e-11 42.8 0.0 3.6e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Steryl acetyl hydrolase COesterase PF00135.28 gi|330835633|ref|YP_004410361.1| - 1.3e-05 24.3 0.0 0.00027 20.0 0.0 2.0 2 0 0 2 2 2 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|330835633|ref|YP_004410361.1| - 0.0011 18.5 0.0 0.0022 17.5 0.0 1.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family Hydrolase_4 PF12146.8 gi|330835633|ref|YP_004410361.1| - 0.0032 16.8 0.0 0.22 10.8 0.0 2.2 1 1 0 2 2 2 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|330835633|ref|YP_004410361.1| - 0.011 15.3 0.0 1.5 8.3 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family AXE1 PF05448.12 gi|330835633|ref|YP_004410361.1| - 0.042 12.5 0.0 0.56 8.8 0.0 2.0 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|330835633|ref|YP_004410361.1| - 0.047 13.3 0.0 0.42 10.2 0.0 2.0 1 1 1 2 2 2 0 alpha/beta hydrolase fold Glycos_transf_1 PF00534.20 gi|330835634|ref|YP_004410362.1| - 2.3e-28 98.9 0.0 6.3e-28 97.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330835634|ref|YP_004410362.1| - 6.9e-25 88.0 0.0 1.8e-24 86.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|330835634|ref|YP_004410362.1| - 1.8e-13 50.8 0.1 3.4e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|330835634|ref|YP_004410362.1| - 0.00042 20.8 0.0 0.00079 19.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|330835634|ref|YP_004410362.1| - 0.0025 18.2 0.0 0.0045 17.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1404 PF07185.11 gi|330835635|ref|YP_004410363.1| - 2.1e-51 174.0 17.4 2.5e-51 173.8 17.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) Cytochrom_B_N_2 PF13631.6 gi|330835636|ref|YP_004410364.1| - 2e-57 193.9 2.9 2e-57 193.9 2.9 3.2 4 1 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|330835636|ref|YP_004410364.1| - 3.8e-22 79.0 11.9 3.8e-22 79.0 11.9 2.6 2 0 0 2 2 2 1 Cytochrome b/b6/petB COX1 PF00115.20 gi|330835637|ref|YP_004410365.1| - 4.2e-76 256.5 55.6 5.2e-76 256.2 55.6 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Rieske PF00355.26 gi|330835639|ref|YP_004410367.1| - 3.9e-09 36.3 0.0 1.1e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2275 PF10039.9 gi|330835639|ref|YP_004410367.1| - 0.062 13.4 0.0 0.091 12.9 0.0 1.1 1 0 0 1 1 1 0 Predicted integral membrane protein (DUF2275) DUF2700 PF10912.8 gi|330835640|ref|YP_004410368.1| - 0.54 10.3 10.6 0.026 14.6 5.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2700) SNN_transmemb PF09049.10 gi|330835641|ref|YP_004410369.1| - 0.13 12.2 1.0 0.13 12.2 1.0 2.6 3 0 0 3 3 3 0 Stannin transmembrane DUF1129 PF06570.11 gi|330835641|ref|YP_004410369.1| - 0.61 9.5 4.8 0.29 10.6 2.6 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1129) Phage_holin_8 PF16931.5 gi|330835641|ref|YP_004410369.1| - 1.9 8.5 10.6 0.69 9.9 5.5 2.0 1 1 1 2 2 2 0 Putative phage holin DUF2173 PF09941.9 gi|330835642|ref|YP_004410370.1| - 0.00013 22.2 0.1 0.00036 20.8 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) DUF2173 PF09941.9 gi|330835643|ref|YP_004410371.1| - 1.5e-05 25.3 0.0 0.00017 21.9 0.0 2.1 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) Phage_holin_3_6 PF07332.11 gi|330835643|ref|YP_004410371.1| - 0.032 14.3 1.5 0.048 13.7 1.5 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF1805 PF08827.11 gi|330835643|ref|YP_004410371.1| - 0.058 13.7 0.1 0.093 13.1 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1805) COX2-transmemb PF09125.10 gi|330835643|ref|YP_004410371.1| - 0.064 13.1 5.0 0.23 11.3 5.0 2.0 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane DUF2207 PF09972.9 gi|330835643|ref|YP_004410371.1| - 0.1 11.3 1.3 0.1 11.3 1.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Citrate_synt PF00285.21 gi|330835645|ref|YP_004410373.1| - 4.2e-118 394.5 0.0 4.8e-118 394.3 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain CBS PF00571.28 gi|330835646|ref|YP_004410374.1| - 1.9e-23 82.6 3.0 7.9e-12 45.4 0.4 2.1 2 0 0 2 2 2 2 CBS domain SAF PF08666.12 gi|330835646|ref|YP_004410374.1| - 0.045 14.4 0.7 5.3 7.8 0.1 2.3 2 0 0 2 2 2 0 SAF domain PEP_mutase PF13714.6 gi|330835647|ref|YP_004410375.1| - 7.6e-54 182.7 0.3 9.7e-54 182.3 0.3 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate phosphomutase ICL PF00463.21 gi|330835647|ref|YP_004410375.1| - 8.4e-11 41.0 0.8 2.2e-10 39.6 0.6 1.6 1 1 1 2 2 2 1 Isocitrate lyase family DUF881 PF05949.12 gi|330835647|ref|YP_004410375.1| - 0.032 14.1 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) MmgE_PrpD PF03972.14 gi|330835648|ref|YP_004410376.1| - 1.1e-107 360.4 0.0 1.3e-107 360.1 0.0 1.0 1 0 0 1 1 1 1 MmgE/PrpD family Ald_Xan_dh_C2 PF02738.18 gi|330835649|ref|YP_004410377.1| - 7e-130 434.1 0.0 9e-130 433.7 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330835649|ref|YP_004410377.1| - 1.4e-14 54.4 0.0 3.7e-14 53.0 0.0 1.8 2 0 0 2 2 2 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Acyl-CoA_dh_1 PF00441.24 gi|330835650|ref|YP_004410378.1| - 3.3e-38 131.2 2.0 4.5e-38 130.8 2.0 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|330835650|ref|YP_004410378.1| - 2.5e-26 92.6 0.1 8.1e-26 90.9 0.0 2.0 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|330835650|ref|YP_004410378.1| - 5.5e-22 77.8 0.0 1.6e-21 76.3 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|330835650|ref|YP_004410378.1| - 2.5e-20 73.1 0.4 4.5e-20 72.3 0.4 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain CbbQ_C PF08406.10 gi|330835650|ref|YP_004410378.1| - 0.073 13.3 0.3 0.18 12.1 0.3 1.6 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal Aminotran_3 PF00202.21 gi|330835651|ref|YP_004410379.1| - 7.3e-111 370.7 0.0 8.7e-111 370.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Acyl-CoA_dh_1 PF00441.24 gi|330835653|ref|YP_004410381.1| - 2.2e-37 128.6 2.4 3.2e-37 128.0 2.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|330835653|ref|YP_004410381.1| - 1.5e-21 76.4 0.1 2.9e-21 75.5 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|330835653|ref|YP_004410381.1| - 2.6e-21 76.4 0.0 1.6e-20 73.8 0.0 2.3 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|330835653|ref|YP_004410381.1| - 1.4e-12 48.0 0.2 3.4e-12 46.8 0.2 1.6 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain 4HBT PF03061.22 gi|330835654|ref|YP_004410382.1| - 2.2e-15 56.8 0.1 3.3e-15 56.2 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|330835654|ref|YP_004410382.1| - 0.00025 21.2 0.2 0.0004 20.5 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|330835654|ref|YP_004410382.1| - 0.001 19.4 0.0 0.0012 19.2 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily MaoC_dehydratas PF01575.19 gi|330835654|ref|YP_004410382.1| - 0.019 14.6 0.1 0.025 14.1 0.1 1.2 1 0 0 1 1 1 0 MaoC like domain PS-DH PF14765.6 gi|330835654|ref|YP_004410382.1| - 0.023 14.0 0.0 0.025 13.8 0.0 1.1 1 0 0 1 1 1 0 Polyketide synthase dehydratase DUF4099 PF13351.6 gi|330835654|ref|YP_004410382.1| - 0.072 13.4 0.1 2.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4099) DUF3100 PF11299.8 gi|330835654|ref|YP_004410382.1| - 0.12 11.8 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3100) Acyl-CoA_dh_1 PF00441.24 gi|330835655|ref|YP_004410383.1| - 7.6e-39 133.3 1.1 1.2e-38 132.7 1.1 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|330835655|ref|YP_004410383.1| - 2.8e-16 59.5 0.1 5.3e-16 58.6 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|330835655|ref|YP_004410383.1| - 3.5e-14 53.2 0.1 6.8e-14 52.3 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|330835655|ref|YP_004410383.1| - 3.9e-09 37.2 0.0 1e-08 35.8 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Thiolase_C PF02803.18 gi|330835656|ref|YP_004410384.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Thiolase, C-terminal domain Thiolase_N PF00108.23 gi|330835656|ref|YP_004410384.1| - 0.11 11.8 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Thiolase, N-terminal domain Thiolase_N PF00108.23 gi|330835657|ref|YP_004410385.1| - 1.4e-08 34.4 0.1 4e-07 29.6 0.1 2.5 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|330835657|ref|YP_004410385.1| - 0.0029 17.2 0.1 2.2 8.0 0.0 2.5 2 1 0 2 2 2 2 Thiolase, C-terminal domain DUF35_N PF12172.8 gi|330835658|ref|YP_004410386.1| - 6.2e-10 38.7 2.1 1.7e-09 37.4 1.7 1.8 2 0 0 2 2 2 1 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF2616 PF11077.8 gi|330835658|ref|YP_004410386.1| - 0.0024 17.6 0.0 0.0033 17.2 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF2616) OB_aCoA_assoc PF01796.17 gi|330835658|ref|YP_004410386.1| - 0.0082 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated NMD3 PF04981.13 gi|330835658|ref|YP_004410386.1| - 0.019 14.4 0.3 0.028 13.9 0.3 1.2 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.6 gi|330835658|ref|YP_004410386.1| - 0.25 11.1 3.6 0.47 10.2 3.6 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF35_N PF12172.8 gi|330835659|ref|YP_004410387.1| - 5.4e-11 42.2 0.7 7e-11 41.8 0.7 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) OB_aCoA_assoc PF01796.17 gi|330835659|ref|YP_004410387.1| - 1.4e-05 25.0 0.0 2.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated zf-C6H2 PF15801.5 gi|330835659|ref|YP_004410387.1| - 0.016 15.5 0.5 0.025 14.9 0.5 1.2 1 0 0 1 1 1 0 zf-MYND-like zinc finger, mRNA-binding NMD3 PF04981.13 gi|330835659|ref|YP_004410387.1| - 0.03 13.8 0.3 0.037 13.5 0.3 1.1 1 0 0 1 1 1 0 NMD3 family zinc_ribbon_2 PF13240.6 gi|330835659|ref|YP_004410387.1| - 0.13 12.0 3.4 0.25 11.1 3.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain AMP-binding PF00501.28 gi|330835660|ref|YP_004410388.1| - 4.2e-66 223.3 0.0 5.3e-66 223.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|330835660|ref|YP_004410388.1| - 3e-20 73.0 0.1 6e-20 72.0 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|330835660|ref|YP_004410388.1| - 1.4e-06 28.1 1.1 4.7e-06 26.4 1.1 1.9 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus HxlR PF01638.17 gi|330835662|ref|YP_004410390.1| - 3.6e-21 74.8 0.1 4.6e-21 74.5 0.1 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|330835662|ref|YP_004410390.1| - 4.7e-08 32.8 0.0 5e-07 29.5 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.6 gi|330835662|ref|YP_004410390.1| - 0.00015 21.6 0.1 0.00026 20.9 0.0 1.4 2 0 0 2 2 2 1 Winged helix-turn-helix RepL PF05732.11 gi|330835662|ref|YP_004410390.1| - 0.0041 16.6 0.1 0.0064 15.9 0.1 1.4 1 1 0 1 1 1 1 Firmicute plasmid replication protein (RepL) MarR PF01047.22 gi|330835662|ref|YP_004410390.1| - 0.0046 16.8 0.1 0.0068 16.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|330835662|ref|YP_004410390.1| - 0.007 15.9 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|330835662|ref|YP_004410390.1| - 0.012 15.7 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|330835662|ref|YP_004410390.1| - 0.021 14.8 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|330835662|ref|YP_004410390.1| - 0.026 14.4 0.0 0.037 13.9 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|330835662|ref|YP_004410390.1| - 0.048 13.6 0.0 0.068 13.1 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.6 gi|330835662|ref|YP_004410390.1| - 0.073 13.3 0.1 0.098 12.8 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain 4HBT PF03061.22 gi|330835663|ref|YP_004410391.1| - 9.2e-15 54.8 0.0 1.2e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|330835663|ref|YP_004410391.1| - 0.0044 17.2 0.0 0.0056 16.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|330835663|ref|YP_004410391.1| - 0.023 15.0 0.0 0.029 14.6 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily Kei1 PF08552.11 gi|330835664|ref|YP_004410392.1| - 0.09 12.6 0.3 0.09 12.6 0.3 2.2 4 0 0 4 4 4 0 Inositolphosphorylceramide synthase subunit Kei1 Glyco_hydro_2_N PF02837.18 gi|330835667|ref|YP_004410395.1| - 0.071 13.0 0.0 0.13 12.2 0.0 1.4 1 1 0 1 1 1 0 Glycosyl hydrolases family 2, sugar binding domain Pirin PF02678.16 gi|330835668|ref|YP_004410396.1| - 7.4e-38 128.8 0.0 1.1e-37 128.3 0.0 1.3 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.13 gi|330835668|ref|YP_004410396.1| - 2.9e-26 91.8 0.0 3.4e-25 88.4 0.0 2.2 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|330835668|ref|YP_004410396.1| - 0.045 13.5 1.4 0.17 11.6 0.2 2.4 2 1 0 2 2 2 0 Cupin domain Cupin_3 PF05899.12 gi|330835668|ref|YP_004410396.1| - 0.048 13.4 0.2 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF861) HI0933_like PF03486.14 gi|330835669|ref|YP_004410397.1| - 0.029 13.1 0.1 0.033 12.9 0.1 1.0 1 0 0 1 1 1 0 HI0933-like protein MFS_1 PF07690.16 gi|330835670|ref|YP_004410398.1| - 3.2e-29 101.9 36.8 4.3e-16 58.8 19.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|330835670|ref|YP_004410398.1| - 0.041 13.2 13.1 0.05 12.9 0.6 2.2 1 1 0 2 2 2 0 Uncharacterised MFS-type transporter YbfB DUF1129 PF06570.11 gi|330835670|ref|YP_004410398.1| - 0.41 10.1 23.4 0.81 9.1 4.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1129) Helicase_RecD PF05127.14 gi|330835672|ref|YP_004410400.1| - 2.9e-39 134.8 0.0 4.5e-39 134.1 0.0 1.3 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|330835672|ref|YP_004410400.1| - 3.9e-33 114.7 0.1 1.2e-21 77.1 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|330835672|ref|YP_004410400.1| - 8.2e-20 70.5 0.0 2e-19 69.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|330835672|ref|YP_004410400.1| - 2.6e-06 27.8 0.0 1.1e-05 25.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|330835672|ref|YP_004410400.1| - 1.6e-05 25.1 0.0 4e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|330835672|ref|YP_004410400.1| - 0.00044 20.2 0.0 0.00098 19.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330835672|ref|YP_004410400.1| - 0.057 13.4 0.0 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 FR47-like protein 2-Hacid_dh_C PF02826.19 gi|330835673|ref|YP_004410401.1| - 1.8e-63 213.1 0.0 2.4e-63 212.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|330835673|ref|YP_004410401.1| - 2e-31 108.4 0.0 2.3e-31 108.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.17 gi|330835673|ref|YP_004410401.1| - 0.019 15.5 0.1 0.071 13.7 0.1 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|330835673|ref|YP_004410401.1| - 0.029 14.6 0.1 0.073 13.2 0.1 1.7 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF2325 PF10087.9 gi|330835673|ref|YP_004410401.1| - 0.092 12.9 0.0 0.49 10.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2325) XdhC_C PF13478.6 gi|330835673|ref|YP_004410401.1| - 0.12 12.9 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain Gp_dh_N PF00044.24 gi|330835673|ref|YP_004410401.1| - 0.21 11.9 1.2 0.42 11.0 1.2 1.6 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Sugar_tr PF00083.24 gi|330835675|ref|YP_004410403.1| - 8.7e-09 34.7 0.1 8.7e-09 34.7 0.1 2.4 2 1 0 3 3 3 2 Sugar (and other) transporter DUF1419 PF07215.11 gi|330835675|ref|YP_004410403.1| - 0.18 12.0 0.8 1.8 8.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1419) Usp PF00582.26 gi|330835676|ref|YP_004410404.1| - 9.9e-28 97.4 0.6 1.2e-27 97.1 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|330835676|ref|YP_004410404.1| - 0.0036 18.0 0.1 0.0045 17.7 0.1 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase PBECR3 PF18812.1 gi|330835676|ref|YP_004410404.1| - 0.05 13.6 0.2 0.069 13.1 0.2 1.2 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 ABC_tran PF00005.27 gi|330835677|ref|YP_004410405.1| - 1.6e-28 99.9 0.0 6.3e-28 98.0 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|330835677|ref|YP_004410405.1| - 2.8e-11 43.8 1.9 3.7e-06 27.0 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|330835677|ref|YP_004410405.1| - 3.3e-07 30.9 1.5 8.7e-07 29.6 1.5 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|330835677|ref|YP_004410405.1| - 0.0075 15.7 0.4 2.8 7.3 0.0 2.9 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain DUF5010_C PF18099.1 gi|330835677|ref|YP_004410405.1| - 0.032 14.4 0.1 0.084 13.0 0.0 1.7 2 0 0 2 2 2 0 DUF5010 C-terminal domain AAA_27 PF13514.6 gi|330835677|ref|YP_004410405.1| - 0.069 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|330835677|ref|YP_004410405.1| - 0.073 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|330835677|ref|YP_004410405.1| - 0.093 13.2 6.8 0.3 11.6 6.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|330835677|ref|YP_004410405.1| - 0.16 12.2 0.3 0.93 9.8 0.5 2.3 2 1 0 2 2 2 0 AAA domain AAA PF00004.29 gi|330835677|ref|YP_004410405.1| - 0.3 11.5 2.4 3.1 8.2 2.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ABC2_membrane PF01061.24 gi|330835678|ref|YP_004410406.1| - 4e-24 85.2 21.9 4e-24 85.2 21.9 1.8 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|330835678|ref|YP_004410406.1| - 1.2e-13 50.9 23.3 1.2e-13 50.9 23.3 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|330835678|ref|YP_004410406.1| - 0.021 14.3 5.0 0.012 15.2 2.9 1.6 2 0 0 2 2 2 0 CcmB protein ABC2_membrane_2 PF12679.7 gi|330835678|ref|YP_004410406.1| - 0.56 9.4 16.6 1.7 7.9 16.6 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein AA_permease_2 PF13520.6 gi|330835679|ref|YP_004410407.1| - 6.4e-17 61.5 47.2 8.1e-17 61.2 47.2 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|330835679|ref|YP_004410407.1| - 6.1e-15 54.8 37.5 9.1e-15 54.2 36.9 1.4 1 1 0 1 1 1 1 Amino acid permease DUF5090 PF17009.5 gi|330835679|ref|YP_004410407.1| - 0.77 9.7 13.9 1.5 8.8 2.1 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF5090) AAA_31 PF13614.6 gi|330835681|ref|YP_004410409.1| - 2.7e-06 27.4 1.8 0.0004 20.4 0.2 2.3 1 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|330835681|ref|YP_004410409.1| - 1.9e-05 24.7 0.0 2.4e-05 24.4 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|330835681|ref|YP_004410409.1| - 0.00088 18.5 0.2 0.0017 17.6 0.2 1.4 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|330835681|ref|YP_004410409.1| - 0.0028 17.2 0.0 0.0091 15.5 0.0 1.7 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|330835681|ref|YP_004410409.1| - 0.013 15.3 0.2 0.022 14.6 0.2 1.6 1 1 0 1 1 1 0 AAA domain ParA PF10609.9 gi|330835681|ref|YP_004410409.1| - 0.063 12.7 0.3 0.12 11.8 0.3 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase Helicase_RecD PF05127.14 gi|330835683|ref|YP_004410411.1| - 5.4e-51 173.0 0.0 1.5e-50 171.5 0.0 1.8 2 0 0 2 2 2 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|330835683|ref|YP_004410411.1| - 2.3e-34 118.8 0.0 4.6e-24 85.1 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|330835683|ref|YP_004410411.1| - 3.1e-27 94.3 0.1 3.3e-26 91.1 0.1 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|330835683|ref|YP_004410411.1| - 5.8e-07 29.4 0.0 1.3e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.7 gi|330835683|ref|YP_004410411.1| - 0.0016 18.8 0.0 0.011 16.1 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain AAA_22 PF13401.6 gi|330835683|ref|YP_004410411.1| - 0.01 16.1 0.0 0.33 11.2 0.0 3.2 2 1 1 3 3 3 0 AAA domain Acetyltransf_1 PF00583.25 gi|330835683|ref|YP_004410411.1| - 0.017 15.4 0.0 0.04 14.1 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family AAA_19 PF13245.6 gi|330835683|ref|YP_004410411.1| - 0.073 13.4 0.0 0.52 10.6 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|330835683|ref|YP_004410411.1| - 0.2 11.4 0.1 1.8 8.3 0.0 2.1 1 1 1 2 2 2 0 AAA domain MazG PF03819.17 gi|330835684|ref|YP_004410412.1| - 4.4e-12 46.0 0.3 5.6e-12 45.7 0.3 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|330835684|ref|YP_004410412.1| - 2.6e-06 27.6 0.1 3.8e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 MazG-like family PRA-PH PF01503.17 gi|330835684|ref|YP_004410412.1| - 4e-05 24.0 0.2 4.4e-05 23.8 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase G_glu_transpept PF01019.21 gi|330835686|ref|YP_004410414.1| - 3.4e-84 283.5 0.0 4.7e-84 283.0 0.0 1.2 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase Peptidase_M48 PF01435.18 gi|330835687|ref|YP_004410415.1| - 7.2e-29 101.0 0.0 9.5e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|330835687|ref|YP_004410415.1| - 2.4e-05 23.7 0.1 0.0063 15.7 0.0 2.2 2 0 0 2 2 2 2 BlaR1 peptidase M56 DUF3810 PF12725.7 gi|330835687|ref|YP_004410415.1| - 0.014 14.8 0.1 0.024 14.0 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3810) Epimerase PF01370.21 gi|330835688|ref|YP_004410416.1| - 1.8e-22 80.0 0.0 1.1e-21 77.4 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330835688|ref|YP_004410416.1| - 3e-21 76.2 0.0 3.8e-15 56.1 0.0 2.4 2 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|330835688|ref|YP_004410416.1| - 0.00025 20.3 0.0 0.00051 19.3 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|330835688|ref|YP_004410416.1| - 0.002 17.3 0.0 0.0044 16.2 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain UDPG_MGDP_dh_N PF03721.14 gi|330835688|ref|YP_004410416.1| - 0.058 13.0 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NTP_transferase PF00483.23 gi|330835689|ref|YP_004410417.1| - 7.4e-22 78.1 0.0 8.9e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|330835689|ref|YP_004410417.1| - 0.00034 21.0 0.0 0.00047 20.5 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain TPP_enzyme_N PF02776.18 gi|330835689|ref|YP_004410417.1| - 0.042 13.5 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CBS PF00571.28 gi|330835690|ref|YP_004410418.1| - 4.6e-29 100.6 5.2 1.3e-15 57.5 0.2 2.0 2 0 0 2 2 2 2 CBS domain IF3_N PF05198.16 gi|330835690|ref|YP_004410418.1| - 0.016 15.4 0.3 4.7 7.6 0.0 2.8 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF1689 PF07954.11 gi|330835691|ref|YP_004410419.1| - 0.0016 18.9 0.0 0.0071 16.8 0.0 2.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1689) DeoC PF01791.9 gi|330835692|ref|YP_004410420.1| - 1.1e-30 107.1 0.0 1.3e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase SIS PF01380.22 gi|330835694|ref|YP_004410422.1| - 2.6e-17 62.9 0.0 4.5e-17 62.1 0.0 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|330835694|ref|YP_004410422.1| - 1.9e-08 34.5 0.7 7.2e-06 26.1 0.2 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|330835694|ref|YP_004410422.1| - 0.0039 17.1 0.4 1.7 8.5 0.1 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase LigB PF02900.18 gi|330835694|ref|YP_004410422.1| - 0.01 14.9 0.0 0.93 8.5 0.0 2.1 2 0 0 2 2 2 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase ApbA PF02558.16 gi|330835694|ref|YP_004410422.1| - 0.12 12.0 0.1 0.16 11.6 0.1 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA CbiA PF01656.23 gi|330835696|ref|YP_004410424.1| - 5.8e-10 39.3 0.0 8.8e-10 38.7 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|330835696|ref|YP_004410424.1| - 7e-09 35.5 0.1 1.2e-08 34.7 0.0 1.4 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|330835696|ref|YP_004410424.1| - 4.2e-08 33.3 0.0 8.1e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|330835696|ref|YP_004410424.1| - 8.2e-05 21.9 0.2 0.00022 20.5 0.0 1.7 2 0 0 2 2 2 1 Anion-transporting ATPase DUF87 PF01935.17 gi|330835696|ref|YP_004410424.1| - 0.017 15.3 0.1 0.032 14.3 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain CBP_BcsQ PF06564.12 gi|330835696|ref|YP_004410424.1| - 0.018 14.6 0.0 0.031 13.8 0.0 1.5 1 1 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|330835696|ref|YP_004410424.1| - 0.023 14.3 0.0 0.077 12.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain ProRS-C_2 PF09181.10 gi|330835696|ref|YP_004410424.1| - 0.046 13.9 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal CLP1_P PF16575.5 gi|330835696|ref|YP_004410424.1| - 0.14 11.9 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_NifH PF00142.18 gi|330835696|ref|YP_004410424.1| - 0.15 11.5 0.0 0.49 9.8 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|330835696|ref|YP_004410424.1| - 0.15 11.3 0.0 0.3 10.3 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ RIO1 PF01163.22 gi|330835697|ref|YP_004410425.1| - 6.3e-29 100.9 0.0 1.1e-28 100.1 0.0 1.4 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.25 gi|330835697|ref|YP_004410425.1| - 1.5e-05 24.5 0.0 2.5e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Rio2_N PF09202.11 gi|330835697|ref|YP_004410425.1| - 1.7e-05 25.0 0.1 4e-05 23.7 0.1 1.7 2 0 0 2 2 2 1 Rio2, N-terminal APH PF01636.23 gi|330835697|ref|YP_004410425.1| - 1.8e-05 24.8 0.1 0.002 18.1 0.0 2.1 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|330835697|ref|YP_004410425.1| - 0.0036 16.9 0.0 0.45 10.1 0.0 2.3 2 0 0 2 2 2 2 Choline/ethanolamine kinase Pkinase_fungal PF17667.1 gi|330835697|ref|YP_004410425.1| - 0.13 11.0 0.0 0.16 10.7 0.0 1.2 1 0 0 1 1 1 0 Fungal protein kinase DUF460 PF04312.13 gi|330835698|ref|YP_004410426.1| - 1.6e-47 160.7 0.1 4.2e-47 159.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF460) HHH_3 PF12836.7 gi|330835698|ref|YP_004410426.1| - 0.13 12.6 0.5 0.94 9.8 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif XLF PF09302.11 gi|330835698|ref|YP_004410426.1| - 0.15 12.3 2.6 0.26 11.4 1.3 2.0 1 1 0 1 1 1 0 XLF-Cernunnos, XRcc4-like factor, NHEJ component DUF641 PF04859.12 gi|330835698|ref|YP_004410426.1| - 0.48 10.8 5.6 1.1 9.6 5.6 1.6 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HMMR_C PF15908.5 gi|330835698|ref|YP_004410426.1| - 0.77 10.0 6.3 4.6 7.5 1.1 2.6 1 1 1 2 2 2 0 Hyaluronan mediated motility receptor C-terminal SlyX PF04102.12 gi|330835698|ref|YP_004410426.1| - 1.3 9.7 5.2 8.3 7.1 0.5 2.7 1 1 1 2 2 2 0 SlyX DivIC PF04977.15 gi|330835698|ref|YP_004410426.1| - 5.2 6.9 8.7 3.7 7.4 2.0 3.0 1 1 2 3 3 3 0 Septum formation initiator Mod_r PF07200.13 gi|330835698|ref|YP_004410426.1| - 6.4 6.9 13.8 2.5 8.2 8.7 2.5 2 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Atg14 PF10186.9 gi|330835698|ref|YP_004410426.1| - 8 5.4 10.0 13 4.7 10.0 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Csm1_N PF18504.1 gi|330835698|ref|YP_004410426.1| - 8.4 6.8 12.3 9.1 6.7 0.7 3.3 2 1 0 3 3 3 0 Csm1 N-terminal domain AdoMet_Synthase PF01941.19 gi|330835699|ref|YP_004410427.1| - 5e-166 552.4 1.9 5.6e-166 552.2 1.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) LSM PF01423.22 gi|330835700|ref|YP_004410428.1| - 1.4e-19 69.6 0.1 1.6e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 LSM domain HTH_20 PF12840.7 gi|330835701|ref|YP_004410429.1| - 3.4e-11 43.0 0.1 5.4e-11 42.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|330835701|ref|YP_004410429.1| - 4.6e-11 42.4 0.6 4.6e-11 42.4 0.6 2.1 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|330835701|ref|YP_004410429.1| - 8.7e-09 35.2 0.5 2.4e-08 33.8 0.2 1.9 1 1 2 3 3 3 1 MarR family HTH_34 PF13601.6 gi|330835701|ref|YP_004410429.1| - 1.3e-06 28.5 0.2 2.6e-06 27.5 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|330835701|ref|YP_004410429.1| - 5.4e-06 26.2 0.1 1.1e-05 25.2 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|330835701|ref|YP_004410429.1| - 2.2e-05 24.9 0.2 4.5e-05 23.9 0.2 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|330835701|ref|YP_004410429.1| - 5.6e-05 22.6 0.7 0.00012 21.6 0.7 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding ArsR PF09824.9 gi|330835701|ref|YP_004410429.1| - 6.9e-05 22.5 0.1 8.1e-05 22.3 0.1 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_IclR PF09339.10 gi|330835701|ref|YP_004410429.1| - 0.0066 16.2 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_41 PF14502.6 gi|330835701|ref|YP_004410429.1| - 0.0072 16.0 1.2 0.014 15.0 0.2 1.9 1 1 1 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|330835701|ref|YP_004410429.1| - 0.0075 16.1 2.1 0.0095 15.8 0.4 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.11 gi|330835701|ref|YP_004410429.1| - 0.024 14.6 0.3 0.098 12.6 0.1 1.8 1 1 1 2 2 2 0 CDC6, C terminal winged helix domain DUF742 PF05331.11 gi|330835701|ref|YP_004410429.1| - 0.029 14.2 0.2 0.032 14.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF742) Fe_dep_repress PF01325.19 gi|330835701|ref|YP_004410429.1| - 0.042 14.0 0.3 0.087 13.0 0.2 1.7 1 1 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.27 gi|330835701|ref|YP_004410429.1| - 0.056 13.4 0.1 0.084 12.8 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_11 PF08279.12 gi|330835701|ref|YP_004410429.1| - 0.067 13.1 0.3 0.11 12.5 0.3 1.3 1 0 0 1 1 1 0 HTH domain CTP_synth_N PF06418.14 gi|330835702|ref|YP_004410430.1| - 1.7e-90 303.0 3.2 2.8e-90 302.2 3.2 1.4 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|330835702|ref|YP_004410430.1| - 1.2e-52 178.4 0.0 2.4e-52 177.5 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|330835702|ref|YP_004410430.1| - 1.5e-09 37.9 0.0 8.3e-09 35.5 0.0 2.1 1 1 1 2 2 2 1 Peptidase C26 OMPdecase PF00215.24 gi|330835703|ref|YP_004410431.1| - 2.4e-20 73.1 2.8 2.7e-20 72.9 2.8 1.0 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family QRPTase_C PF01729.19 gi|330835703|ref|YP_004410431.1| - 0.0033 17.2 0.4 0.0078 16.0 0.2 1.6 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain DUF4364 PF14277.6 gi|330835704|ref|YP_004410432.1| - 0.1 12.4 1.9 0.15 11.8 0.5 1.9 1 1 0 2 2 2 0 Domain of unknown function (DUF4364) DUF2153 PF09921.9 gi|330835705|ref|YP_004410433.1| - 1.8e-54 182.8 7.4 2.1e-54 182.6 7.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) Trm112p PF03966.16 gi|330835706|ref|YP_004410434.1| - 2.2e-15 56.9 2.9 3.2e-15 56.4 2.9 1.3 1 0 0 1 1 1 1 Trm112p-like protein zf-UDP PF14569.6 gi|330835706|ref|YP_004410434.1| - 0.056 13.6 0.2 0.056 13.6 0.2 2.7 1 1 2 3 3 3 0 Zinc-binding RING-finger PhnA_Zn_Ribbon PF08274.12 gi|330835706|ref|YP_004410434.1| - 2.1 8.4 9.0 4.9 7.2 0.2 3.1 3 0 0 3 3 3 0 PhnA Zinc-Ribbon PGM_PMM_I PF02878.16 gi|330835707|ref|YP_004410435.1| - 5.6e-41 139.5 0.0 1.1e-40 138.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|330835707|ref|YP_004410435.1| - 1.4e-20 73.9 0.0 3.1e-20 72.7 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|330835707|ref|YP_004410435.1| - 5.8e-20 71.6 0.0 1e-19 70.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|330835707|ref|YP_004410435.1| - 1.1e-10 41.5 0.0 3.8e-10 39.8 0.0 1.9 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DAO PF01266.24 gi|330835708|ref|YP_004410436.1| - 2.3e-48 165.6 0.0 2.6e-48 165.4 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|330835708|ref|YP_004410436.1| - 4.9e-05 22.7 0.0 0.00012 21.4 0.0 1.7 1 0 0 1 1 1 1 Thi4 family Shikimate_DH PF01488.20 gi|330835708|ref|YP_004410436.1| - 0.00079 19.5 0.2 0.0014 18.7 0.2 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox_2 PF07992.14 gi|330835708|ref|YP_004410436.1| - 0.00099 18.4 0.1 0.0019 17.5 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|330835708|ref|YP_004410436.1| - 0.0025 18.3 0.0 0.0084 16.7 0.0 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|330835708|ref|YP_004410436.1| - 0.0047 16.2 0.0 0.0083 15.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|330835708|ref|YP_004410436.1| - 0.0088 15.7 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|330835708|ref|YP_004410436.1| - 0.01 15.8 0.0 0.018 15.0 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_8 PF13450.6 gi|330835708|ref|YP_004410436.1| - 0.014 15.6 0.1 0.039 14.2 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|330835708|ref|YP_004410436.1| - 0.026 13.8 0.1 0.039 13.2 0.1 1.2 1 0 0 1 1 1 0 FAD binding domain F420_oxidored PF03807.17 gi|330835708|ref|YP_004410436.1| - 0.061 13.9 0.0 0.12 13.0 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|330835708|ref|YP_004410436.1| - 0.078 13.2 0.1 0.16 12.3 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|330835708|ref|YP_004410436.1| - 0.11 12.8 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_9 PF13454.6 gi|330835708|ref|YP_004410436.1| - 0.12 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 FAD-NAD(P)-binding ThiF PF00899.21 gi|330835708|ref|YP_004410436.1| - 0.18 11.1 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 ThiF family Lycopene_cycl PF05834.12 gi|330835708|ref|YP_004410436.1| - 0.22 10.6 0.0 2.1 7.3 0.0 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein GIDA PF01134.22 gi|330835708|ref|YP_004410436.1| - 0.26 10.3 0.5 5.4 6.0 0.1 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A SO_alpha_A3 PF17806.1 gi|330835709|ref|YP_004410437.1| - 9.6e-08 32.3 0.0 2e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain Fer2_BFD PF04324.15 gi|330835709|ref|YP_004410437.1| - 2.8e-05 24.4 0.3 7.4e-05 23.0 0.3 1.8 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Phosphodiest PF01663.22 gi|330835710|ref|YP_004410438.1| - 3.8e-33 115.6 0.4 4.2e-32 112.1 0.4 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|330835710|ref|YP_004410438.1| - 0.0004 20.5 0.0 0.002 18.3 0.0 2.1 2 0 0 2 2 2 1 PglZ domain Sulfatase PF00884.23 gi|330835710|ref|YP_004410438.1| - 0.056 12.8 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Sulfatase HEM4 PF02602.15 gi|330835712|ref|YP_004410440.1| - 1.1e-17 64.2 0.0 1.5e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DNA_pol_lambd_f PF10391.9 gi|330835712|ref|YP_004410440.1| - 0.046 13.5 0.0 0.14 12.0 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Methyltransf_8 PF05148.15 gi|330835712|ref|YP_004410440.1| - 0.053 13.4 0.1 0.074 12.9 0.1 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase HHH_5 PF14520.6 gi|330835712|ref|YP_004410440.1| - 0.14 12.7 0.0 0.99 10.1 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain Porphobil_deam PF01379.20 gi|330835713|ref|YP_004410441.1| - 4e-59 199.5 0.0 5.1e-59 199.2 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|330835713|ref|YP_004410441.1| - 6.1e-08 32.9 0.0 1.3e-07 31.9 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Aminotran_3 PF00202.21 gi|330835714|ref|YP_004410442.1| - 2.7e-70 237.1 0.0 3.4e-70 236.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|330835714|ref|YP_004410442.1| - 0.00011 21.5 0.0 0.00032 20.0 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class I and II ALAD PF00490.21 gi|330835715|ref|YP_004410443.1| - 4.3e-132 440.1 0.1 4.8e-132 439.9 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase Mob_Pre PF01076.19 gi|330835715|ref|YP_004410443.1| - 0.071 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Plasmid recombination enzyme GlutR_N PF05201.15 gi|330835716|ref|YP_004410444.1| - 8.3e-34 116.4 0.2 1.6e-33 115.5 0.2 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|330835716|ref|YP_004410444.1| - 3.3e-15 56.4 0.0 1.2e-14 54.5 0.0 2.1 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|330835716|ref|YP_004410444.1| - 4e-15 56.0 0.1 8.8e-15 54.9 0.1 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|330835716|ref|YP_004410444.1| - 5.5e-05 23.7 0.0 0.00014 22.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|330835716|ref|YP_004410444.1| - 0.00057 19.5 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|330835716|ref|YP_004410444.1| - 0.00058 19.3 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|330835716|ref|YP_004410444.1| - 0.0018 18.3 0.0 0.0074 16.3 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.27 gi|330835716|ref|YP_004410444.1| - 0.0044 17.6 0.1 0.015 15.8 0.1 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|330835716|ref|YP_004410444.1| - 0.0088 15.7 0.1 0.016 14.8 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|330835716|ref|YP_004410444.1| - 0.0097 15.2 0.1 0.02 14.1 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ELFV_dehydrog PF00208.21 gi|330835716|ref|YP_004410444.1| - 0.018 14.8 0.2 0.11 12.2 0.1 2.3 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ThiF PF00899.21 gi|330835716|ref|YP_004410444.1| - 0.027 13.8 0.1 0.051 12.9 0.1 1.4 1 0 0 1 1 1 0 ThiF family Sacchrp_dh_NADP PF03435.18 gi|330835716|ref|YP_004410444.1| - 0.031 14.5 0.0 0.072 13.4 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Ldh_1_N PF00056.23 gi|330835716|ref|YP_004410444.1| - 0.033 14.3 0.0 0.068 13.3 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|330835716|ref|YP_004410444.1| - 0.035 14.3 0.0 0.078 13.1 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|330835716|ref|YP_004410444.1| - 0.11 12.8 0.0 0.24 11.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain GFO_IDH_MocA PF01408.22 gi|330835716|ref|YP_004410444.1| - 0.12 13.2 0.0 0.36 11.7 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|330835717|ref|YP_004410445.1| - 4.4e-23 81.7 0.0 7e-23 81.1 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|330835717|ref|YP_004410445.1| - 1.4e-05 25.2 0.1 4.2e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|330835717|ref|YP_004410445.1| - 3.8e-05 23.9 0.1 0.00013 22.2 0.0 1.9 2 0 0 2 2 2 1 TrkA-N domain Pyr_redox PF00070.27 gi|330835717|ref|YP_004410445.1| - 8e-05 23.1 0.1 0.00022 21.7 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|330835717|ref|YP_004410445.1| - 0.00026 20.3 0.0 0.00074 18.8 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|330835717|ref|YP_004410445.1| - 0.0005 19.4 0.1 0.001 18.4 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.21 gi|330835717|ref|YP_004410445.1| - 0.0028 17.7 0.2 0.044 13.9 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_3 PF13738.6 gi|330835717|ref|YP_004410445.1| - 0.0068 15.7 0.1 0.015 14.6 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|330835717|ref|YP_004410445.1| - 0.0084 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|330835717|ref|YP_004410445.1| - 0.034 13.7 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|330835717|ref|YP_004410445.1| - 0.046 13.6 0.1 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|330835717|ref|YP_004410445.1| - 0.17 11.1 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain XPG_I PF00867.18 gi|330835718|ref|YP_004410446.1| - 5.2e-29 100.5 0.1 1.2e-28 99.2 0.0 1.7 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|330835718|ref|YP_004410446.1| - 6.7e-11 42.6 0.0 1.5e-10 41.4 0.0 1.6 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|330835718|ref|YP_004410446.1| - 8.1e-06 26.4 1.0 2.6e-05 24.7 0.0 2.2 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|330835718|ref|YP_004410446.1| - 0.0044 17.6 0.0 0.015 15.9 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|330835718|ref|YP_004410446.1| - 0.014 15.5 0.1 0.057 13.5 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif SAS-6_N PF16531.5 gi|330835720|ref|YP_004410448.1| - 0.03 14.9 0.0 0.032 14.8 0.0 1.2 1 0 0 1 1 1 0 Centriolar protein SAS N-terminal EAP30 PF04157.16 gi|330835720|ref|YP_004410448.1| - 0.045 13.0 0.0 0.046 13.0 0.0 1.0 1 0 0 1 1 1 0 EAP30/Vps36 family AAA PF00004.29 gi|330835721|ref|YP_004410449.1| - 1.9e-96 319.5 0.0 2.2e-48 164.1 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330835721|ref|YP_004410449.1| - 6.3e-34 115.5 6.1 9.7e-18 63.7 0.5 3.7 3 0 0 3 3 3 2 AAA+ lid domain CDC48_N PF02359.18 gi|330835721|ref|YP_004410449.1| - 1.5e-33 114.8 2.2 1.8e-32 111.3 1.6 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|330835721|ref|YP_004410449.1| - 2.5e-15 56.6 0.0 5e-07 29.6 0.0 3.0 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|330835721|ref|YP_004410449.1| - 4.4e-13 49.7 0.0 1.9e-06 28.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.17 gi|330835721|ref|YP_004410449.1| - 6.1e-13 48.3 1.2 6.1e-13 48.3 1.2 1.9 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|330835721|ref|YP_004410449.1| - 2e-12 47.8 0.1 8.9e-05 22.9 0.0 3.8 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|330835721|ref|YP_004410449.1| - 5.5e-12 46.1 1.2 0.0071 16.6 0.0 4.5 2 2 2 4 4 4 2 AAA domain AAA_5 PF07728.14 gi|330835721|ref|YP_004410449.1| - 1.5e-10 41.2 1.8 0.0014 18.6 0.1 4.4 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|330835721|ref|YP_004410449.1| - 2.5e-10 40.7 0.0 0.00063 19.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|330835721|ref|YP_004410449.1| - 7.3e-10 38.6 0.0 0.00013 21.3 0.0 2.8 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|330835721|ref|YP_004410449.1| - 3.1e-09 37.5 0.0 0.0049 17.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|330835721|ref|YP_004410449.1| - 1.1e-08 35.2 0.0 0.0031 17.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|330835721|ref|YP_004410449.1| - 2.4e-08 33.9 0.0 0.0062 16.3 0.0 2.8 3 0 0 3 3 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|330835721|ref|YP_004410449.1| - 4.2e-07 29.6 0.6 0.0083 15.5 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|330835721|ref|YP_004410449.1| - 6.9e-07 29.6 0.0 0.014 15.7 0.0 2.8 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.6 gi|330835721|ref|YP_004410449.1| - 1.3e-06 28.8 0.2 0.039 14.2 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|330835721|ref|YP_004410449.1| - 1.3e-06 28.3 0.1 0.05 13.3 0.0 2.9 2 1 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|330835721|ref|YP_004410449.1| - 1.9e-06 27.8 3.8 0.00077 19.4 0.3 3.1 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_25 PF13481.6 gi|330835721|ref|YP_004410449.1| - 2e-06 27.6 3.3 0.012 15.2 0.0 3.5 2 2 1 3 3 3 2 AAA domain ATPase_2 PF01637.18 gi|330835721|ref|YP_004410449.1| - 4.3e-06 26.8 0.3 0.23 11.3 0.0 3.7 3 1 1 4 4 3 1 ATPase domain predominantly from Archaea AAA_3 PF07726.11 gi|330835721|ref|YP_004410449.1| - 1.4e-05 24.9 0.0 0.22 11.4 0.0 3.0 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) UFD1 PF03152.14 gi|330835721|ref|YP_004410449.1| - 1.6e-05 24.5 0.0 4.8e-05 22.9 0.0 1.8 1 1 1 2 2 1 1 Ubiquitin fusion degradation protein UFD1 Sigma54_activat PF00158.26 gi|330835721|ref|YP_004410449.1| - 2.8e-05 23.9 0.1 0.72 9.5 0.0 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain TsaE PF02367.17 gi|330835721|ref|YP_004410449.1| - 3.5e-05 23.8 0.0 0.36 10.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|330835721|ref|YP_004410449.1| - 6.1e-05 23.6 0.0 0.32 11.5 0.0 2.7 2 0 0 2 2 2 2 ABC transporter DUF815 PF05673.13 gi|330835721|ref|YP_004410449.1| - 6.2e-05 22.3 0.0 1.2 8.3 0.0 3.7 3 1 0 3 3 3 2 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|330835721|ref|YP_004410449.1| - 6.4e-05 22.3 0.5 0.12 11.7 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_7 PF12775.7 gi|330835721|ref|YP_004410449.1| - 7.2e-05 22.4 0.1 0.43 10.1 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region NACHT PF05729.12 gi|330835721|ref|YP_004410449.1| - 0.00014 21.9 0.4 0.63 9.9 0.1 2.8 3 0 0 3 3 2 2 NACHT domain Bac_DnaA PF00308.18 gi|330835721|ref|YP_004410449.1| - 0.00017 21.5 0.0 0.031 14.1 0.0 3.0 2 1 0 2 2 2 1 Bacterial dnaA protein NB-ARC PF00931.22 gi|330835721|ref|YP_004410449.1| - 0.00031 20.0 0.0 0.14 11.3 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain PhoH PF02562.16 gi|330835721|ref|YP_004410449.1| - 0.00085 18.8 0.4 0.46 9.9 0.1 2.8 2 0 0 2 2 2 1 PhoH-like protein Parvo_NS1 PF01057.17 gi|330835721|ref|YP_004410449.1| - 0.00088 18.4 0.1 1.1 8.3 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Guanylate_kin PF00625.21 gi|330835721|ref|YP_004410449.1| - 0.00095 18.9 0.6 14 5.4 0.0 4.5 3 2 2 5 5 5 0 Guanylate kinase AAA_17 PF13207.6 gi|330835721|ref|YP_004410449.1| - 0.0011 19.4 0.0 1.7 9.1 0.0 2.9 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|330835721|ref|YP_004410449.1| - 0.0011 18.3 0.0 1.9 7.8 0.0 3.5 3 0 0 3 3 3 1 KaiC NTPase_1 PF03266.15 gi|330835721|ref|YP_004410449.1| - 0.0012 18.8 0.5 1.6 8.6 0.0 3.8 3 1 1 4 4 4 1 NTPase AFG1_ATPase PF03969.16 gi|330835721|ref|YP_004410449.1| - 0.0026 16.7 0.4 1.9 7.3 0.1 2.5 2 1 0 2 2 2 2 AFG1-like ATPase PduV-EutP PF10662.9 gi|330835721|ref|YP_004410449.1| - 0.0058 16.4 0.0 2.4 7.9 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|330835721|ref|YP_004410449.1| - 0.0067 16.8 1.1 3.7 7.9 0.2 3.1 2 1 1 3 3 3 0 AAA domain ATP-synt_ab PF00006.25 gi|330835721|ref|YP_004410449.1| - 0.015 14.9 0.0 1.6 8.3 0.0 2.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_30 PF13604.6 gi|330835721|ref|YP_004410449.1| - 0.022 14.5 1.5 3.2 7.4 0.1 2.9 3 0 0 3 3 2 0 AAA domain TniB PF05621.11 gi|330835721|ref|YP_004410449.1| - 0.022 14.2 0.0 5.6 6.3 0.0 2.8 3 0 0 3 3 2 0 Bacterial TniB protein AAA_11 PF13086.6 gi|330835721|ref|YP_004410449.1| - 0.032 14.0 1.0 6.7 6.4 0.0 3.0 3 0 0 3 3 3 0 AAA domain Rad17 PF03215.15 gi|330835721|ref|YP_004410449.1| - 0.039 13.9 0.0 6 6.7 0.0 2.9 2 1 0 2 2 2 0 Rad17 P-loop domain Viral_helicase1 PF01443.18 gi|330835721|ref|YP_004410449.1| - 0.044 13.5 0.0 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Roc PF08477.13 gi|330835721|ref|YP_004410449.1| - 0.053 13.7 0.0 5.7 7.2 0.0 2.5 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase DUF2075 PF09848.9 gi|330835721|ref|YP_004410449.1| - 0.055 12.7 0.0 9.1 5.4 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) RsgA_GTPase PF03193.16 gi|330835721|ref|YP_004410449.1| - 0.068 13.1 0.1 32 4.4 0.0 3.7 4 0 0 4 4 3 0 RsgA GTPase ADSL_C PF10397.9 gi|330835721|ref|YP_004410449.1| - 0.073 13.6 0.4 7.9 7.1 0.1 3.2 3 0 0 3 3 2 0 Adenylosuccinate lyase C-terminus IPT PF01745.16 gi|330835721|ref|YP_004410449.1| - 0.077 12.4 0.1 1.1 8.6 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase Cytidylate_kin PF02224.18 gi|330835721|ref|YP_004410449.1| - 0.09 12.5 0.8 6.4 6.4 0.0 3.2 3 0 0 3 3 3 0 Cytidylate kinase DUF4131 PF13567.6 gi|330835721|ref|YP_004410449.1| - 0.095 12.3 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Sigma54_activ_2 PF14532.6 gi|330835721|ref|YP_004410449.1| - 0.15 12.2 0.0 15 5.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain EF1_GNE PF00736.19 gi|330835722|ref|YP_004410450.1| - 2.5e-16 59.6 0.0 2.8e-16 59.5 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF1610 PF07754.11 gi|330835723|ref|YP_004410451.1| - 1.4e-14 53.7 10.3 1.4e-11 44.1 5.3 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|330835723|ref|YP_004410451.1| - 4.1e-06 26.0 9.2 0.024 14.0 0.2 3.2 3 0 0 3 3 3 3 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|330835723|ref|YP_004410451.1| - 1.9e-05 24.5 4.5 0.00067 19.5 0.7 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|330835723|ref|YP_004410451.1| - 6.6e-05 22.9 3.8 1.2 9.2 0.1 3.2 3 0 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain DZR PF12773.7 gi|330835723|ref|YP_004410451.1| - 0.00013 21.9 8.0 0.012 15.6 8.5 2.6 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|330835723|ref|YP_004410451.1| - 0.00041 20.0 14.1 0.059 13.1 4.8 3.7 3 1 0 3 3 3 2 zinc-ribbon domain DUF35_N PF12172.8 gi|330835723|ref|YP_004410451.1| - 0.00052 19.8 8.4 0.39 10.6 0.1 3.1 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|330835723|ref|YP_004410451.1| - 0.00095 18.6 10.8 0.04 13.4 6.7 2.8 2 1 0 2 2 2 1 TFIIB zinc-binding zf-C2HC5 PF06221.13 gi|330835723|ref|YP_004410451.1| - 0.00096 19.1 8.0 0.0015 18.5 1.9 2.1 1 1 1 2 2 2 1 Putative zinc finger motif, C2HC5-type Anti-TRAP PF15777.5 gi|330835723|ref|YP_004410451.1| - 0.0013 18.6 4.0 0.016 15.2 0.4 2.1 2 0 0 2 2 2 1 Tryptophan RNA-binding attenuator protein inhibitory protein C1_1 PF00130.22 gi|330835723|ref|YP_004410451.1| - 0.0031 17.4 2.4 0.011 15.6 0.1 2.0 2 0 0 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_2 PF03107.16 gi|330835723|ref|YP_004410451.1| - 0.0036 17.6 4.8 0.61 10.5 1.1 2.2 1 1 1 2 2 2 2 C1 domain zf_C2H2_10 PF18414.1 gi|330835723|ref|YP_004410451.1| - 0.0044 16.5 8.0 0.24 11.0 0.1 2.6 3 0 0 3 3 2 2 C2H2 type zinc-finger zf_UBZ PF18439.1 gi|330835723|ref|YP_004410451.1| - 0.0051 16.4 8.3 1.3 8.7 0.2 3.2 2 1 1 3 3 3 1 Ubiquitin-Binding Zinc Finger DUF1451 PF07295.11 gi|330835723|ref|YP_004410451.1| - 0.0061 16.6 0.5 0.0061 16.6 0.5 1.7 2 0 0 2 2 2 1 Zinc-ribbon containing domain zf-RING_7 PF02591.15 gi|330835723|ref|YP_004410451.1| - 0.0067 16.6 7.5 0.67 10.2 0.2 3.2 3 0 0 3 3 3 1 C4-type zinc ribbon domain HypA PF01155.19 gi|330835723|ref|YP_004410451.1| - 0.014 15.4 5.0 0.17 11.9 5.0 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-NADH-PPase PF09297.11 gi|330835723|ref|YP_004410451.1| - 0.015 14.9 1.2 0.015 14.9 1.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|330835723|ref|YP_004410451.1| - 0.017 15.1 9.5 4.5 7.3 0.0 3.6 4 0 0 4 4 3 0 Nudix N-terminal Rubredoxin_2 PF18073.1 gi|330835723|ref|YP_004410451.1| - 0.018 14.7 6.7 6.7 6.5 0.1 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain NinF PF05810.12 gi|330835723|ref|YP_004410451.1| - 0.032 14.1 0.2 0.048 13.5 0.2 1.3 1 0 0 1 1 1 0 NinF protein zf-MYND PF01753.18 gi|330835723|ref|YP_004410451.1| - 0.038 14.1 2.5 0.27 11.4 2.5 2.0 1 1 0 1 1 1 0 MYND finger Ribosomal_L37ae PF01780.19 gi|330835723|ref|YP_004410451.1| - 0.039 14.0 3.9 0.23 11.6 0.3 2.1 1 1 1 2 2 2 0 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.10 gi|330835723|ref|YP_004410451.1| - 0.053 13.7 10.8 0.09 12.9 2.4 2.5 1 1 2 3 3 3 0 Zinc ribbon domain Sgf11 PF08209.11 gi|330835723|ref|YP_004410451.1| - 0.054 13.1 6.8 0.96 9.1 0.1 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.6 gi|330835723|ref|YP_004410451.1| - 0.062 13.2 9.7 0.39 10.7 4.1 3.0 2 1 1 3 3 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|330835723|ref|YP_004410451.1| - 0.083 13.4 10.0 1.3 9.6 0.2 3.2 2 1 1 3 3 3 0 Zinc-finger double domain YhfH PF14149.6 gi|330835723|ref|YP_004410451.1| - 0.087 12.8 7.3 2.5 8.1 0.1 3.2 3 0 0 3 3 3 0 YhfH-like protein zf-ISL3 PF14690.6 gi|330835723|ref|YP_004410451.1| - 0.094 13.4 8.9 0.76 10.5 0.2 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_9 PF14369.6 gi|330835723|ref|YP_004410451.1| - 0.094 13.0 7.1 1.5 9.1 1.9 2.9 2 1 1 3 3 3 0 zinc-ribbon Zn_Tnp_IS1 PF03811.13 gi|330835723|ref|YP_004410451.1| - 0.1 12.4 2.8 6.5 6.6 0.0 2.9 3 0 0 3 3 3 0 InsA N-terminal domain TFIIS_C PF01096.18 gi|330835723|ref|YP_004410451.1| - 0.12 12.3 6.0 8.4 6.3 0.2 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.12 gi|330835723|ref|YP_004410451.1| - 0.12 12.3 6.1 15 5.7 3.1 3.0 2 1 0 2 2 2 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.6 gi|330835723|ref|YP_004410451.1| - 0.14 12.3 10.1 1 9.5 0.6 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_ribbon_17 PF17120.5 gi|330835723|ref|YP_004410451.1| - 0.15 11.7 6.4 5.9 6.6 0.3 3.0 1 1 2 3 3 3 0 Zinc-ribbon, C4HC2 type zinc_ribbon_10 PF10058.9 gi|330835723|ref|YP_004410451.1| - 0.17 11.6 9.7 2.4 8.0 0.8 3.0 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TackOD1 PF18551.1 gi|330835723|ref|YP_004410451.1| - 0.18 11.5 3.5 0.21 11.2 3.5 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-LITAF-like PF10601.9 gi|330835723|ref|YP_004410451.1| - 0.19 12.0 7.1 10 6.5 0.1 3.0 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|330835723|ref|YP_004410451.1| - 0.19 11.8 13.5 1.6 8.8 6.5 2.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain IBR PF01485.21 gi|330835723|ref|YP_004410451.1| - 0.19 12.0 7.0 6.6 7.0 7.0 2.1 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C3HC4_4 PF15227.6 gi|330835723|ref|YP_004410451.1| - 0.25 11.5 6.1 1 9.6 0.8 2.2 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING Auto_anti-p27 PF06677.12 gi|330835723|ref|YP_004410451.1| - 0.3 11.3 10.0 0.49 10.6 6.0 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PHD PF00628.29 gi|330835723|ref|YP_004410451.1| - 0.36 10.8 6.6 12 5.9 6.6 2.3 1 1 0 1 1 1 0 PHD-finger NOB1_Zn_bind PF08772.11 gi|330835723|ref|YP_004410451.1| - 0.37 11.0 6.7 5.7 7.2 6.7 2.2 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-C2H2_3 PF13878.6 gi|330835723|ref|YP_004410451.1| - 0.39 10.6 5.1 8.9 6.2 0.4 3.1 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Ribosomal_L32p PF01783.23 gi|330835723|ref|YP_004410451.1| - 0.61 10.4 6.6 3.1 8.1 1.3 3.0 1 1 1 2 2 2 0 Ribosomal L32p protein family NRDD PF13597.6 gi|330835723|ref|YP_004410451.1| - 0.7 8.6 7.3 0.4 9.4 1.0 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-HIT PF04438.16 gi|330835723|ref|YP_004410451.1| - 0.81 9.6 14.5 2.1 8.3 3.2 3.2 1 1 1 2 2 2 0 HIT zinc finger A2L_zn_ribbon PF08792.10 gi|330835723|ref|YP_004410451.1| - 0.85 9.4 10.5 2.6 7.9 0.2 3.1 2 1 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|330835723|ref|YP_004410451.1| - 0.89 10.3 8.8 67 4.3 9.0 2.8 1 1 0 1 1 1 0 zinc-ribbon family Rpr2 PF04032.16 gi|330835723|ref|YP_004410451.1| - 1.1 9.6 6.5 10 6.5 6.5 2.6 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain Prok-RING_1 PF14446.6 gi|330835723|ref|YP_004410451.1| - 1.1 9.2 8.2 0.23 11.4 0.9 2.2 1 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.6 gi|330835723|ref|YP_004410451.1| - 1.2 8.5 10.3 2.5 7.5 1.7 3.0 1 1 1 2 2 2 0 Transcription factor zinc-finger Lar_restr_allev PF14354.6 gi|330835723|ref|YP_004410451.1| - 1.3 9.4 6.6 3.2 8.2 1.7 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar CpXC PF14353.6 gi|330835723|ref|YP_004410451.1| - 1.4 9.0 8.7 9.3 6.3 0.8 2.9 1 1 2 3 3 3 0 CpXC protein zf-AN1 PF01428.16 gi|330835723|ref|YP_004410451.1| - 1.4 9.1 8.9 2.7 8.2 1.6 2.7 2 2 1 3 3 3 0 AN1-like Zinc finger DNA_RNApol_7kD PF03604.13 gi|330835723|ref|YP_004410451.1| - 1.6 8.5 7.6 1.6 8.5 1.8 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit ADK_lid PF05191.14 gi|330835723|ref|YP_004410451.1| - 1.8 8.6 12.8 13 5.8 5.6 3.0 1 1 1 2 2 2 0 Adenylate kinase, active site lid DUF3268 PF11672.8 gi|330835723|ref|YP_004410451.1| - 2.2 8.6 5.4 3.3 8.1 2.5 2.1 1 1 1 2 2 2 0 zinc-finger-containing domain PADR1 PF08063.12 gi|330835723|ref|YP_004410451.1| - 2.3 8.0 9.9 0.28 11.0 1.0 2.8 1 1 2 3 3 3 0 PADR1 (NUC008) domain Terminase_GpA PF05876.12 gi|330835723|ref|YP_004410451.1| - 2.3 6.6 4.1 7.6 4.9 0.1 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-Di19 PF05605.12 gi|330835723|ref|YP_004410451.1| - 2.7 8.3 8.5 4.3 7.7 0.3 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2 PF00096.26 gi|330835723|ref|YP_004410451.1| - 3.2 8.4 13.8 6.5 7.4 1.5 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type RNA_POL_M_15KD PF02150.16 gi|330835723|ref|YP_004410451.1| - 5.2 7.0 9.0 2.8 7.9 0.6 2.9 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_ribbon_SprT PF17283.2 gi|330835723|ref|YP_004410451.1| - 5.3 7.0 12.6 56 3.8 8.3 3.3 2 1 0 2 2 2 0 SprT-like zinc ribbon domain DUF2072 PF09845.9 gi|330835723|ref|YP_004410451.1| - 5.4 7.3 8.8 0.9 9.8 2.9 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-tcix PF14952.6 gi|330835723|ref|YP_004410451.1| - 5.8 6.6 12.7 6.9 6.4 0.8 3.1 2 1 1 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-C6H2 PF15801.5 gi|330835723|ref|YP_004410451.1| - 6.1 7.2 9.1 1.3 9.4 2.4 2.5 1 1 2 3 3 3 0 zf-MYND-like zinc finger, mRNA-binding HscB_4_cys PF18256.1 gi|330835723|ref|YP_004410451.1| - 7.3 6.5 10.8 0.49 10.3 2.1 2.4 2 1 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif PTH2 PF01981.16 gi|330835724|ref|YP_004410452.1| - 9e-39 132.4 0.0 1e-38 132.2 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.20 gi|330835724|ref|YP_004410452.1| - 0.032 14.2 0.1 0.044 13.7 0.0 1.3 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases MoCF_biosynth PF00994.24 gi|330835724|ref|YP_004410452.1| - 0.074 12.7 0.6 0.089 12.5 0.6 1.4 1 1 0 1 1 1 0 Probable molybdopterin binding domain Cyclin_C PF02984.19 gi|330835724|ref|YP_004410452.1| - 0.2 11.7 0.0 0.26 11.4 0.0 1.1 1 0 0 1 1 1 0 Cyclin, C-terminal domain TruD PF01142.18 gi|330835725|ref|YP_004410453.1| - 1.1e-55 189.2 0.2 1e-49 169.5 0.1 2.0 1 1 1 2 2 2 2 tRNA pseudouridine synthase D (TruD) P53 PF00870.18 gi|330835725|ref|YP_004410453.1| - 0.082 12.7 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 P53 DNA-binding domain tRNA-synt_2 PF00152.20 gi|330835726|ref|YP_004410454.1| - 5.9e-93 311.4 0.1 6.9e-93 311.2 0.1 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|330835726|ref|YP_004410454.1| - 1.9e-14 53.4 0.1 3.2e-14 52.6 0.1 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF3662 PF12401.8 gi|330835726|ref|YP_004410454.1| - 0.11 12.9 0.3 0.24 11.8 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2662) KH_5 PF13184.6 gi|330835727|ref|YP_004410455.1| - 0.0035 17.4 0.4 0.01 15.9 0.1 1.9 2 0 0 2 2 2 1 NusA-like KH domain Ribosomal_L40e PF01020.17 gi|330835728|ref|YP_004410456.1| - 1.3e-08 34.6 6.0 1.6e-08 34.3 6.0 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DUF35_N PF12172.8 gi|330835728|ref|YP_004410456.1| - 0.0014 18.5 0.3 0.0017 18.2 0.3 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|330835728|ref|YP_004410456.1| - 0.0025 17.8 0.7 0.0028 17.7 0.7 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|330835728|ref|YP_004410456.1| - 0.0072 16.3 0.6 0.0079 16.2 0.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|330835728|ref|YP_004410456.1| - 0.0087 15.4 1.6 0.014 14.8 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|330835728|ref|YP_004410456.1| - 0.0094 15.6 1.2 0.017 14.9 1.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain TackOD1 PF18551.1 gi|330835728|ref|YP_004410456.1| - 0.01 15.5 1.2 0.011 15.5 1.2 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-RanBP PF00641.18 gi|330835728|ref|YP_004410456.1| - 0.012 14.9 3.2 0.017 14.4 3.2 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Paired_CXXCH_1 PF09699.10 gi|330835728|ref|YP_004410456.1| - 0.05 13.3 1.0 0.15 11.9 0.2 1.9 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) zinc_ribbon_13 PF09855.9 gi|330835728|ref|YP_004410456.1| - 0.29 11.3 3.5 1 9.6 0.3 2.0 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin_2 PF18073.1 gi|330835728|ref|YP_004410456.1| - 0.64 9.8 5.1 1.4 8.7 5.1 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|330835728|ref|YP_004410456.1| - 1.3 8.8 6.8 3.6 7.4 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2204 PF09970.9 gi|330835729|ref|YP_004410457.1| - 3.1e-53 180.1 6.6 3.5e-53 179.9 6.6 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) PHAT PF09246.10 gi|330835729|ref|YP_004410457.1| - 0.082 12.7 0.2 0.15 11.9 0.2 1.4 1 0 0 1 1 1 0 PHAT TPP_enzyme_M PF00205.22 gi|330835730|ref|YP_004410458.1| - 1e-34 119.2 0.0 3.4e-34 117.5 0.0 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|330835730|ref|YP_004410458.1| - 4.2e-23 81.8 0.0 6.2e-23 81.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.16 gi|330835730|ref|YP_004410458.1| - 0.022 13.7 0.0 0.059 12.3 0.0 1.6 2 0 0 2 2 2 0 NAD(P) transhydrogenase beta subunit GMP_synt_C PF00958.22 gi|330835731|ref|YP_004410459.1| - 7.6e-21 74.0 1.6 6.6e-17 61.4 0.2 2.8 1 1 1 2 2 2 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|330835731|ref|YP_004410459.1| - 7e-11 41.7 0.1 5.7e-10 38.7 0.1 2.1 1 1 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|330835731|ref|YP_004410459.1| - 7.9e-07 29.0 0.0 1.3e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|330835731|ref|YP_004410459.1| - 0.00064 18.6 0.0 0.11 11.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|330835731|ref|YP_004410459.1| - 0.0007 19.2 0.0 0.088 12.3 0.0 2.5 2 1 1 3 3 3 2 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|330835731|ref|YP_004410459.1| - 0.018 14.6 0.0 0.28 10.7 0.0 2.4 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) DUF2666 PF10869.8 gi|330835731|ref|YP_004410459.1| - 0.037 14.2 3.6 0.95 9.7 0.2 3.5 2 1 2 4 4 4 0 Protein of unknown function (DUF2666) GATase_3 PF07685.14 gi|330835732|ref|YP_004410460.1| - 2.4e-33 115.4 0.0 3.5e-33 114.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|330835732|ref|YP_004410460.1| - 2.7e-12 46.8 0.0 4.3e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|330835732|ref|YP_004410460.1| - 2.6e-09 37.2 0.0 1.9e-08 34.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain SNO PF01174.19 gi|330835732|ref|YP_004410460.1| - 0.029 14.2 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase PF00117.28 gi|330835732|ref|YP_004410460.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase class-I CobS PF02654.15 gi|330835733|ref|YP_004410461.1| - 6.7e-32 111.3 8.1 7.6e-32 111.2 8.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF3267 PF11667.8 gi|330835733|ref|YP_004410461.1| - 0.32 11.3 0.1 0.32 11.3 0.1 2.5 3 0 0 3 3 3 0 Putative zincin peptidase ADH_N PF08240.12 gi|330835735|ref|YP_004410463.1| - 3.5e-24 84.8 0.5 5.9e-24 84.1 0.5 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|330835735|ref|YP_004410463.1| - 9e-16 58.0 0.0 1.8e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|330835735|ref|YP_004410463.1| - 1e-13 51.3 0.1 1.5e-13 50.8 0.1 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|330835735|ref|YP_004410463.1| - 0.0005 21.1 0.0 0.00081 20.4 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.20 gi|330835735|ref|YP_004410463.1| - 0.02 15.0 0.0 0.047 13.8 0.0 1.5 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|330835735|ref|YP_004410463.1| - 0.03 13.6 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|330835735|ref|YP_004410463.1| - 0.11 11.7 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M48 PF01435.18 gi|330835736|ref|YP_004410464.1| - 3.7e-22 79.1 1.0 2.9e-21 76.1 1.0 2.2 1 1 0 1 1 1 1 Peptidase family M48 KH_1 PF00013.29 gi|330835736|ref|YP_004410464.1| - 0.0069 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 KH domain Peptidase_M10 PF00413.24 gi|330835736|ref|YP_004410464.1| - 0.062 13.1 0.0 0.08 12.8 0.0 1.3 1 0 0 1 1 1 0 Matrixin DUF2268 PF10026.9 gi|330835736|ref|YP_004410464.1| - 0.088 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Ald_Xan_dh_C2 PF02738.18 gi|330835737|ref|YP_004410465.1| - 1.4e-151 505.7 0.0 1.6e-151 505.5 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|330835737|ref|YP_004410465.1| - 2e-16 60.3 0.0 4e-09 36.8 0.0 2.5 1 1 1 2 2 2 2 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Phage_tail_2 PF06199.11 gi|330835737|ref|YP_004410465.1| - 0.004 17.3 0.3 0.0079 16.3 0.3 1.4 1 0 0 1 1 1 1 Phage tail tube protein DUF1947 PF09183.10 gi|330835738|ref|YP_004410466.1| - 4.4e-24 84.6 1.3 6.6e-24 84.0 1.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|330835738|ref|YP_004410466.1| - 2.1e-12 46.8 0.0 3.6e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 PUA domain Pre-PUA PF17832.1 gi|330835738|ref|YP_004410466.1| - 0.015 16.0 0.4 0.27 12.0 0.4 2.4 1 1 0 1 1 1 0 Pre-PUA-like domain HTH_24 PF13412.6 gi|330835739|ref|YP_004410467.1| - 3.3e-07 29.8 0.2 7.4e-07 28.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|330835739|ref|YP_004410467.1| - 1.3e-06 28.2 1.4 1.9e-06 27.7 0.2 2.0 2 1 0 2 2 2 1 HTH domain MarR PF01047.22 gi|330835739|ref|YP_004410467.1| - 2.4e-05 24.1 0.0 4.1e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|330835739|ref|YP_004410467.1| - 3.1e-05 23.6 0.2 0.00014 21.5 0.0 2.1 2 1 0 2 2 2 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|330835739|ref|YP_004410467.1| - 6.3e-05 23.1 0.4 0.00015 21.9 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|330835739|ref|YP_004410467.1| - 0.00041 20.2 0.0 0.00075 19.3 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|330835739|ref|YP_004410467.1| - 0.0016 18.3 0.3 0.0038 17.1 0.1 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|330835739|ref|YP_004410467.1| - 0.0024 17.7 0.0 0.0052 16.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|330835739|ref|YP_004410467.1| - 0.0034 17.4 0.1 0.0076 16.3 0.0 1.6 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.6 gi|330835739|ref|YP_004410467.1| - 0.006 16.5 0.5 0.0092 15.9 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain Prefoldin PF02996.17 gi|330835739|ref|YP_004410467.1| - 0.0071 16.3 1.1 0.012 15.5 1.1 1.4 1 0 0 1 1 1 1 Prefoldin subunit SlyX PF04102.12 gi|330835739|ref|YP_004410467.1| - 0.0081 16.8 0.7 0.013 16.1 0.7 1.3 1 0 0 1 1 1 1 SlyX FliJ PF02050.16 gi|330835739|ref|YP_004410467.1| - 0.013 15.7 0.2 0.018 15.3 0.2 1.2 1 0 0 1 1 1 0 Flagellar FliJ protein Oberon_cc PF16312.5 gi|330835739|ref|YP_004410467.1| - 0.014 15.3 0.5 0.021 14.8 0.5 1.3 1 0 0 1 1 1 0 Coiled-coil region of Oberon FeoC PF09012.10 gi|330835739|ref|YP_004410467.1| - 0.014 15.5 0.3 0.054 13.6 0.0 1.8 2 0 0 2 2 2 0 FeoC like transcriptional regulator FlaC_arch PF05377.11 gi|330835739|ref|YP_004410467.1| - 0.023 15.1 1.5 0.047 14.1 1.5 1.5 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TolA_bind_tri PF16331.5 gi|330835739|ref|YP_004410467.1| - 0.026 14.6 1.6 0.029 14.4 0.7 1.5 2 0 0 2 2 1 0 TolA binding protein trimerisation HTH_17 PF12728.7 gi|330835739|ref|YP_004410467.1| - 0.028 14.6 0.1 0.092 13.0 0.0 1.8 2 1 0 2 2 2 0 Helix-turn-helix domain TRM PF02005.16 gi|330835739|ref|YP_004410467.1| - 0.029 13.6 0.0 0.034 13.3 0.0 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Fib_alpha PF08702.10 gi|330835739|ref|YP_004410467.1| - 0.029 14.6 2.7 0.035 14.3 2.7 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Rrf2 PF02082.20 gi|330835739|ref|YP_004410467.1| - 0.031 14.6 0.4 0.18 12.2 0.0 2.0 1 1 1 2 2 2 0 Transcriptional regulator DUF4423 PF14394.6 gi|330835739|ref|YP_004410467.1| - 0.034 13.9 1.0 0.55 9.9 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) Csm1_N PF18504.1 gi|330835739|ref|YP_004410467.1| - 0.034 14.5 2.1 0.051 13.9 2.1 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain HTH_IclR PF09339.10 gi|330835739|ref|YP_004410467.1| - 0.039 13.8 0.0 0.075 12.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330835739|ref|YP_004410467.1| - 0.046 13.7 0.5 0.55 10.2 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain Bap31_Bap29_C PF18035.1 gi|330835739|ref|YP_004410467.1| - 0.071 13.1 1.9 0.13 12.3 1.9 1.5 1 0 0 1 1 1 0 Bap31/Bap29 cytoplasmic coiled-coil domain F-112 PF09645.10 gi|330835739|ref|YP_004410467.1| - 0.075 13.1 0.6 0.42 10.7 0.0 1.9 1 1 0 2 2 2 0 F-112 protein DUF4479 PF14794.6 gi|330835739|ref|YP_004410467.1| - 0.11 12.4 1.7 0.84 9.5 0.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4479) Med9 PF07544.13 gi|330835739|ref|YP_004410467.1| - 0.13 12.3 7.5 2.2 8.4 7.5 2.1 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Spc24 PF08286.11 gi|330835739|ref|YP_004410467.1| - 0.14 12.4 1.5 0.14 12.4 0.6 1.6 2 0 0 2 2 1 0 Spc24 subunit of Ndc80 LexA_DNA_bind PF01726.16 gi|330835739|ref|YP_004410467.1| - 0.27 11.0 2.1 5.4 6.9 0.1 3.0 2 1 0 2 2 2 0 LexA DNA binding domain DUF5595 PF18077.1 gi|330835739|ref|YP_004410467.1| - 0.78 9.9 3.6 0.84 9.8 2.5 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF5595) OCD_Mu_crystall PF02423.15 gi|330835740|ref|YP_004410468.1| - 6.1e-33 114.1 0.4 1.8e-32 112.6 0.4 1.7 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|330835740|ref|YP_004410468.1| - 5.8e-05 23.2 0.1 0.00011 22.3 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.21 gi|330835740|ref|YP_004410468.1| - 0.00049 19.4 0.1 0.00077 18.8 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|330835740|ref|YP_004410468.1| - 0.0011 19.2 0.1 0.0022 18.2 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|330835740|ref|YP_004410468.1| - 0.0024 17.3 0.2 0.0052 16.2 0.2 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|330835740|ref|YP_004410468.1| - 0.031 14.9 0.2 0.098 13.2 0.1 1.8 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|330835740|ref|YP_004410468.1| - 0.086 13.0 0.4 0.17 12.0 0.1 1.7 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Aminotran_1_2 PF00155.21 gi|330835741|ref|YP_004410469.1| - 4.4e-29 101.8 0.0 4.9e-29 101.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|330835741|ref|YP_004410469.1| - 3e-06 26.3 0.0 7.7e-06 24.9 0.0 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Peptidase_M24 PF00557.24 gi|330835742|ref|YP_004410470.1| - 2.6e-50 171.0 0.0 3.2e-50 170.7 0.0 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|330835742|ref|YP_004410470.1| - 8.7e-11 42.6 0.0 1.3e-10 42.0 0.0 1.3 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|330835743|ref|YP_004410471.1| - 6.9e-20 70.7 0.1 1.5e-19 69.6 0.1 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RuvC_1 PF18516.1 gi|330835743|ref|YP_004410471.1| - 0.00046 19.4 2.9 0.074 12.2 2.9 3.0 1 1 0 1 1 1 1 RuvC nuclease domain OrfB_IS605 PF01385.19 gi|330835743|ref|YP_004410471.1| - 0.0033 17.6 0.0 0.0061 16.8 0.0 1.5 1 0 0 1 1 1 1 Probable transposase zinc_ribbon_2 PF13240.6 gi|330835743|ref|YP_004410471.1| - 0.021 14.6 1.8 3.4 7.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|330835743|ref|YP_004410471.1| - 0.021 14.9 0.8 0.036 14.1 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF5392 PF17370.2 gi|330835743|ref|YP_004410471.1| - 0.076 13.1 0.2 0.13 12.4 0.2 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5392) TF_Zn_Ribbon PF08271.12 gi|330835743|ref|YP_004410471.1| - 0.11 12.1 1.9 11 5.7 0.1 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding HypF_C PF17788.1 gi|330835743|ref|YP_004410471.1| - 0.12 13.0 0.0 0.28 11.9 0.0 1.6 1 0 0 1 1 1 0 HypF Kae1-like domain Rubredoxin_2 PF18073.1 gi|330835743|ref|YP_004410471.1| - 0.14 11.9 3.4 1.2 9.0 3.9 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|330835743|ref|YP_004410471.1| - 0.51 9.8 2.3 6.5 6.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|330835743|ref|YP_004410471.1| - 0.67 10.1 3.6 15 5.8 0.2 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|330835743|ref|YP_004410471.1| - 2.7 8.0 5.2 2.2 8.3 0.7 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|330835743|ref|YP_004410471.1| - 3.3 7.4 4.8 42 3.9 4.8 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain GATase_4 PF13230.6 gi|330835744|ref|YP_004410472.1| - 0.014 14.3 0.0 0.017 14.1 0.0 1.1 1 0 0 1 1 1 0 Glutamine amidotransferases class-II DUF4024 PF13216.6 gi|330835744|ref|YP_004410472.1| - 0.05 13.6 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF4024) Lactamase_B_2 PF12706.7 gi|330835745|ref|YP_004410473.1| - 2.7e-17 62.9 0.0 4.6e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330835745|ref|YP_004410473.1| - 1.2e-11 45.0 0.3 2.5e-11 43.9 0.3 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|330835745|ref|YP_004410473.1| - 1e-06 28.7 0.1 2.9e-06 27.3 0.1 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain PfkB PF00294.24 gi|330835746|ref|YP_004410474.1| - 1.3e-55 188.8 0.5 1.6e-55 188.6 0.5 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|330835746|ref|YP_004410474.1| - 2.1e-13 50.2 0.0 2.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|330835746|ref|YP_004410474.1| - 0.00016 21.3 0.0 0.00024 20.7 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|330835747|ref|YP_004410475.1| - 1.4e-78 263.7 0.0 1.8e-78 263.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|330835747|ref|YP_004410475.1| - 8.3e-07 28.7 0.0 1.5e-06 27.9 0.0 1.4 1 0 0 1 1 1 1 Carbohydrate kinase PfkB PF00294.24 gi|330835747|ref|YP_004410475.1| - 3.7e-05 23.2 0.0 6.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Glyco_tranf_2_3 PF13641.6 gi|330835748|ref|YP_004410476.1| - 3.3e-36 125.3 0.0 4.7e-36 124.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|330835748|ref|YP_004410476.1| - 5.9e-28 97.8 0.0 1.4e-27 96.6 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|330835748|ref|YP_004410476.1| - 1.7e-27 96.6 4.2 3.6e-27 95.5 4.2 1.6 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|330835748|ref|YP_004410476.1| - 9.6e-12 44.7 0.0 2.8e-11 43.2 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|330835748|ref|YP_004410476.1| - 1.2e-08 34.7 0.1 1e-07 31.7 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|330835748|ref|YP_004410476.1| - 0.0039 17.7 0.0 0.0071 16.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Kelch_1 PF01344.25 gi|330835748|ref|YP_004410476.1| - 0.0094 15.5 0.0 0.019 14.5 0.0 1.6 1 0 0 1 1 1 1 Kelch motif DUF2070 PF09843.9 gi|330835748|ref|YP_004410476.1| - 4.6 5.4 10.3 6.4 4.9 10.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Fer4 PF00037.27 gi|330835751|ref|YP_004410479.1| - 3.4e-13 48.8 12.6 3.7e-07 29.7 6.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|330835751|ref|YP_004410479.1| - 2.9e-11 43.8 25.6 1.6e-06 28.6 9.8 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|330835751|ref|YP_004410479.1| - 1.7e-09 37.7 17.9 1.1e-07 31.8 6.8 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|330835751|ref|YP_004410479.1| - 7.7e-09 35.6 5.4 1.1e-08 35.1 5.4 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|330835751|ref|YP_004410479.1| - 2.2e-07 30.6 12.6 0.00027 20.9 5.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|330835751|ref|YP_004410479.1| - 8.8e-07 29.0 5.7 1.4e-06 28.3 5.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|330835751|ref|YP_004410479.1| - 9.7e-07 29.1 1.4 0.011 16.2 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835751|ref|YP_004410479.1| - 6.6e-05 22.8 10.2 0.023 14.8 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|330835751|ref|YP_004410479.1| - 0.00011 23.1 8.5 0.008 17.1 2.9 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|330835751|ref|YP_004410479.1| - 0.00022 21.7 1.1 0.34 11.5 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|330835751|ref|YP_004410479.1| - 0.00033 21.4 13.9 0.013 16.4 6.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|330835751|ref|YP_004410479.1| - 0.0004 20.9 9.6 0.14 12.8 3.9 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|330835751|ref|YP_004410479.1| - 0.00089 19.6 8.6 0.048 14.2 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|330835751|ref|YP_004410479.1| - 0.00091 19.3 0.9 0.0011 19.1 0.9 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|330835751|ref|YP_004410479.1| - 0.023 14.9 2.9 0.023 14.9 2.9 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain DUF2761 PF10959.8 gi|330835751|ref|YP_004410479.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Fer4_15 PF13459.6 gi|330835751|ref|YP_004410479.1| - 0.16 12.7 10.6 3.7 8.4 0.1 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_22 PF17179.4 gi|330835751|ref|YP_004410479.1| - 3.4 8.6 7.9 12 6.8 2.4 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain UPF0126 PF03458.13 gi|330835752|ref|YP_004410480.1| - 2.1e-43 146.1 8.2 3.5e-22 78.1 1.7 2.2 2 0 0 2 2 2 2 UPF0126 domain ABC_tran PF00005.27 gi|330835753|ref|YP_004410481.1| - 9.1e-31 107.2 0.2 2e-13 51.1 0.0 3.7 2 2 1 3 3 3 3 ABC transporter AAA_21 PF13304.6 gi|330835753|ref|YP_004410481.1| - 3.2e-13 50.2 5.7 0.012 15.4 0.3 4.3 2 2 2 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|330835753|ref|YP_004410481.1| - 7.8e-10 39.6 0.3 0.001 19.7 0.2 2.7 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.19 gi|330835753|ref|YP_004410481.1| - 8.3e-09 35.2 3.6 0.034 13.6 0.1 4.1 3 1 1 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|330835753|ref|YP_004410481.1| - 2.1e-08 33.8 0.2 0.003 17.3 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|330835753|ref|YP_004410481.1| - 4.8e-08 33.2 1.3 0.0058 16.6 0.0 2.6 2 1 0 2 2 2 2 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|330835753|ref|YP_004410481.1| - 1.5e-07 30.9 0.0 0.004 16.4 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_14 PF13173.6 gi|330835753|ref|YP_004410481.1| - 3.7e-07 30.2 1.4 0.013 15.5 0.0 3.3 2 2 0 2 2 2 2 AAA domain AAA_15 PF13175.6 gi|330835753|ref|YP_004410481.1| - 6.7e-07 29.4 7.9 0.0096 15.7 3.3 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA PF00004.29 gi|330835753|ref|YP_004410481.1| - 1.2e-06 29.0 0.0 0.0038 17.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|330835753|ref|YP_004410481.1| - 1.4e-06 28.3 0.0 0.021 14.8 0.0 2.5 2 0 0 2 2 2 2 NACHT domain cobW PF02492.19 gi|330835753|ref|YP_004410481.1| - 2.9e-06 27.0 0.4 0.071 12.7 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA_16 PF13191.6 gi|330835753|ref|YP_004410481.1| - 3.5e-06 27.5 0.0 0.034 14.5 0.0 2.4 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|330835753|ref|YP_004410481.1| - 7.6e-06 26.2 0.0 0.018 15.3 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|330835753|ref|YP_004410481.1| - 1.4e-05 25.3 0.0 0.02 15.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|330835753|ref|YP_004410481.1| - 4.5e-05 23.4 0.3 0.34 10.8 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase SRP54 PF00448.22 gi|330835753|ref|YP_004410481.1| - 5.9e-05 22.8 0.1 0.016 14.8 0.1 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|330835753|ref|YP_004410481.1| - 6.2e-05 22.8 0.0 0.095 12.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain G-alpha PF00503.20 gi|330835753|ref|YP_004410481.1| - 8.1e-05 21.9 0.1 0.019 14.2 0.0 2.2 2 0 0 2 2 2 1 G-protein alpha subunit AAA_13 PF13166.6 gi|330835753|ref|YP_004410481.1| - 8.8e-05 21.4 0.0 1.2 7.6 0.0 3.2 3 0 0 3 3 3 2 AAA domain Roc PF08477.13 gi|330835753|ref|YP_004410481.1| - 0.00011 22.4 0.1 0.25 11.6 0.0 2.5 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase MMR_HSR1 PF01926.23 gi|330835753|ref|YP_004410481.1| - 0.0002 21.4 0.4 0.081 13.0 0.2 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase DUF3584 PF12128.8 gi|330835753|ref|YP_004410481.1| - 0.00025 18.7 1.2 0.0069 14.0 0.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF3584) TsaE PF02367.17 gi|330835753|ref|YP_004410481.1| - 0.00026 21.0 0.0 0.052 13.5 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|330835753|ref|YP_004410481.1| - 0.00034 21.2 0.7 0.16 12.5 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|330835753|ref|YP_004410481.1| - 0.00039 20.8 0.1 0.36 11.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_7 PF12775.7 gi|330835753|ref|YP_004410481.1| - 0.00042 19.9 0.0 0.29 10.6 0.0 2.4 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_30 PF13604.6 gi|330835753|ref|YP_004410481.1| - 0.00045 20.0 0.0 0.27 10.9 0.0 2.3 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|330835753|ref|YP_004410481.1| - 0.0005 19.9 0.1 0.98 9.1 0.0 2.5 3 0 0 3 3 2 2 Viral (Superfamily 1) RNA helicase Rad17 PF03215.15 gi|330835753|ref|YP_004410481.1| - 0.00055 19.9 0.0 0.011 15.6 0.0 2.2 2 0 0 2 2 2 1 Rad17 P-loop domain MobB PF03205.14 gi|330835753|ref|YP_004410481.1| - 0.00056 19.8 0.6 0.47 10.3 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.6 gi|330835753|ref|YP_004410481.1| - 0.00071 19.9 0.0 0.11 12.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain Arf PF00025.21 gi|330835753|ref|YP_004410481.1| - 0.00081 18.9 0.1 0.056 12.9 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family NTPase_1 PF03266.15 gi|330835753|ref|YP_004410481.1| - 0.0011 18.9 0.3 2.2 8.2 0.0 2.8 2 0 0 2 2 2 2 NTPase RNA_helicase PF00910.22 gi|330835753|ref|YP_004410481.1| - 0.0014 19.0 0.0 0.86 10.0 0.0 2.6 2 0 0 2 2 2 1 RNA helicase FtsK_SpoIIIE PF01580.18 gi|330835753|ref|YP_004410481.1| - 0.0019 17.6 0.1 0.39 10.0 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_17 PF13207.6 gi|330835753|ref|YP_004410481.1| - 0.0024 18.3 0.1 0.58 10.6 0.1 3.2 3 1 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|330835753|ref|YP_004410481.1| - 0.0027 17.7 0.4 0.12 12.4 0.1 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) ATP_bind_1 PF03029.17 gi|330835753|ref|YP_004410481.1| - 0.0028 17.5 0.8 6.1 6.5 0.0 3.3 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|330835753|ref|YP_004410481.1| - 0.0038 17.0 0.1 1.4 8.6 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation PhoH PF02562.16 gi|330835753|ref|YP_004410481.1| - 0.0048 16.4 0.0 3.3 7.1 0.0 2.5 2 0 0 2 2 2 0 PhoH-like protein SRPRB PF09439.10 gi|330835753|ref|YP_004410481.1| - 0.0072 15.8 0.0 2 7.8 0.0 2.4 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit dNK PF01712.19 gi|330835753|ref|YP_004410481.1| - 0.011 15.6 0.1 4.5 7.1 0.0 2.3 2 0 0 2 2 2 0 Deoxynucleoside kinase T2SSE PF00437.20 gi|330835753|ref|YP_004410481.1| - 0.011 14.8 0.0 1.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein Septin PF00735.18 gi|330835753|ref|YP_004410481.1| - 0.017 14.4 0.2 1.6 7.9 0.0 2.3 2 0 0 2 2 2 0 Septin GTP_EFTU PF00009.27 gi|330835753|ref|YP_004410481.1| - 0.018 14.6 0.0 0.35 10.4 0.0 2.4 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain DLIC PF05783.11 gi|330835753|ref|YP_004410481.1| - 0.019 13.8 0.1 3.3 6.4 0.0 2.2 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) AAA_27 PF13514.6 gi|330835753|ref|YP_004410481.1| - 0.029 13.9 0.0 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|330835753|ref|YP_004410481.1| - 0.031 13.2 0.0 0.94 8.3 0.0 2.2 2 0 0 2 2 2 0 PrkA AAA domain Pox_A32 PF04665.12 gi|330835753|ref|YP_004410481.1| - 0.039 13.4 0.5 13 5.2 0.0 2.9 3 0 0 3 3 3 0 Poxvirus A32 protein TrwB_AAD_bind PF10412.9 gi|330835753|ref|YP_004410481.1| - 0.049 12.5 0.1 5.7 5.7 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATP-synt_ab PF00006.25 gi|330835753|ref|YP_004410481.1| - 0.054 13.1 0.0 4.1 7.0 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|330835753|ref|YP_004410481.1| - 0.066 12.6 0.1 1.1 8.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein DUF87 PF01935.17 gi|330835753|ref|YP_004410481.1| - 0.068 13.3 0.1 2.3 8.3 0.0 2.8 3 0 0 3 3 3 0 Helicase HerA, central domain IstB_IS21 PF01695.17 gi|330835753|ref|YP_004410481.1| - 0.073 12.8 0.0 5.1 6.8 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein SbcCD_C PF13558.6 gi|330835753|ref|YP_004410481.1| - 0.086 13.1 0.0 1.2 9.4 0.0 2.3 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|330835753|ref|YP_004410481.1| - 0.087 12.4 0.0 3 7.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain VirE PF05272.11 gi|330835753|ref|YP_004410481.1| - 0.15 11.8 0.0 0.56 9.9 0.0 1.8 2 0 0 2 2 2 0 Virulence-associated protein E Zeta_toxin PF06414.12 gi|330835753|ref|YP_004410481.1| - 0.17 11.1 0.0 12 5.1 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin Fst_toxin PF13955.6 gi|330835755|ref|YP_004410483.1| - 0.14 12.1 4.5 3.5 7.6 0.9 2.8 2 0 0 2 2 2 0 Toxin Fst, type I toxin-antitoxin system SafA PF17073.5 gi|330835755|ref|YP_004410483.1| - 5.5 7.0 10.7 0.38 10.7 0.9 2.8 2 1 0 2 2 2 0 Two-component-system connector protein Epimerase PF01370.21 gi|330835757|ref|YP_004410485.1| - 5.4e-45 153.7 0.0 7.4e-45 153.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|330835757|ref|YP_004410485.1| - 1.9e-40 139.3 0.1 5.8e-40 137.7 0.1 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|330835757|ref|YP_004410485.1| - 3.3e-14 52.6 0.0 5.3e-14 51.9 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|330835757|ref|YP_004410485.1| - 9.8e-10 38.0 0.4 2.4e-06 26.9 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|330835757|ref|YP_004410485.1| - 2.9e-09 36.4 0.0 3.3e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|330835757|ref|YP_004410485.1| - 1.9e-07 30.5 0.3 4.8e-05 22.6 0.3 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|330835757|ref|YP_004410485.1| - 0.022 14.6 0.4 0.79 9.6 0.1 2.3 2 0 0 2 2 2 0 KR domain Ribosomal_S8e PF01201.22 gi|330835759|ref|YP_004410487.1| - 2.6e-31 108.6 2.5 2.9e-31 108.5 2.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Prenyltransf PF01255.19 gi|330835760|ref|YP_004410488.1| - 1.4e-66 224.2 1.2 1.6e-66 224.0 1.2 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase MAAL_N PF05034.13 gi|330835760|ref|YP_004410488.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.5 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus Peptidase_M20 PF01546.28 gi|330835761|ref|YP_004410489.1| - 4.8e-19 68.9 0.0 5.8e-19 68.6 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|330835761|ref|YP_004410489.1| - 5.8e-09 35.8 0.0 9.9e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|330835761|ref|YP_004410489.1| - 0.04 13.6 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 Aminotran_3 PF00202.21 gi|330835762|ref|YP_004410490.1| - 1.8e-103 346.4 0.0 2.6e-103 345.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|330835762|ref|YP_004410490.1| - 0.063 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Aminotransferase class I and II DUF4523 PF15023.6 gi|330835762|ref|YP_004410490.1| - 0.2 11.5 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4523) RimK PF08443.11 gi|330835763|ref|YP_004410491.1| - 1.3e-32 113.0 0.0 1.6e-32 112.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|330835763|ref|YP_004410491.1| - 2.9e-11 43.1 0.0 3.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|330835763|ref|YP_004410491.1| - 2.6e-06 27.6 0.0 4.3e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|330835763|ref|YP_004410491.1| - 4.9e-06 26.2 0.0 8.9e-06 25.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|330835763|ref|YP_004410491.1| - 5.3e-06 26.1 0.0 7.8e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|330835763|ref|YP_004410491.1| - 1.2e-05 24.7 0.0 0.00038 19.8 0.0 2.1 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|330835763|ref|YP_004410491.1| - 2.1e-05 24.2 0.1 0.00019 21.0 0.1 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|330835763|ref|YP_004410491.1| - 0.00035 20.2 0.0 0.00053 19.6 0.0 1.3 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|330835763|ref|YP_004410491.1| - 0.0073 15.6 0.1 0.36 10.1 0.0 2.2 2 0 0 2 2 2 1 YheC/D like ATP-grasp ATP-grasp_4 PF13535.6 gi|330835763|ref|YP_004410491.1| - 0.014 15.0 0.3 0.053 13.1 0.1 2.0 1 1 1 2 2 2 0 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|330835763|ref|YP_004410491.1| - 0.016 14.8 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain TF_Zn_Ribbon PF08271.12 gi|330835764|ref|YP_004410492.1| - 0.0092 15.5 1.0 0.019 14.5 1.0 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|330835764|ref|YP_004410492.1| - 0.011 16.0 0.0 0.012 15.9 0.0 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|330835764|ref|YP_004410492.1| - 0.014 15.4 0.5 0.074 13.1 0.3 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_4 PF13717.6 gi|330835764|ref|YP_004410492.1| - 0.033 14.1 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|330835764|ref|YP_004410492.1| - 0.14 12.3 0.7 2.6 8.3 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain AsnC_trans_reg PF01037.21 gi|330835765|ref|YP_004410493.1| - 3.7e-14 52.4 0.1 7.7e-14 51.4 0.0 1.5 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|330835765|ref|YP_004410493.1| - 2.7e-12 46.0 2.2 3.3e-11 42.6 1.0 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|330835765|ref|YP_004410493.1| - 1.3e-11 44.1 0.1 2.6e-11 43.2 0.1 1.5 2 0 0 2 2 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|330835765|ref|YP_004410493.1| - 6.4e-06 26.0 2.5 1.3e-05 25.0 0.5 2.4 3 0 0 3 3 3 1 HTH domain HTH_Mga PF08280.11 gi|330835765|ref|YP_004410493.1| - 3.1e-05 23.9 0.3 7.5e-05 22.7 0.4 1.6 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain NapD PF03927.13 gi|330835765|ref|YP_004410493.1| - 4.8e-05 23.3 0.1 0.0001 22.3 0.1 1.6 1 1 0 1 1 1 1 NapD protein HTH_DeoR PF08220.12 gi|330835765|ref|YP_004410493.1| - 0.0015 18.3 0.2 0.0026 17.5 0.2 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain DUF4423 PF14394.6 gi|330835765|ref|YP_004410493.1| - 0.0087 15.8 0.2 0.01 15.6 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|330835765|ref|YP_004410493.1| - 0.016 15.3 0.2 0.031 14.4 0.2 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.17 gi|330835765|ref|YP_004410493.1| - 0.041 13.8 0.6 0.06 13.2 0.6 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.22 gi|330835765|ref|YP_004410493.1| - 0.05 13.5 0.2 0.31 11.0 0.1 2.2 3 0 0 3 3 3 0 MarR family TrmB PF01978.19 gi|330835765|ref|YP_004410493.1| - 0.056 13.3 0.2 0.13 12.2 0.2 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|330835765|ref|YP_004410493.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_36 PF13730.6 gi|330835765|ref|YP_004410493.1| - 0.081 12.9 0.2 0.15 12.0 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 gi|330835765|ref|YP_004410493.1| - 0.11 12.5 0.3 0.25 11.4 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family Rrf2 PF02082.20 gi|330835765|ref|YP_004410493.1| - 0.12 12.7 0.5 0.41 11.0 0.2 2.1 2 1 1 3 3 3 0 Transcriptional regulator MarR_2 PF12802.7 gi|330835765|ref|YP_004410493.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.4 1 0 0 1 1 1 0 MarR family PAX PF00292.18 gi|330835765|ref|YP_004410493.1| - 0.18 11.7 2.3 0.84 9.6 0.5 2.3 2 1 0 2 2 2 0 'Paired box' domain AA_kinase PF00696.28 gi|330835766|ref|YP_004410494.1| - 2.2e-31 109.3 4.9 2.5e-31 109.1 4.9 1.0 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dh PF01118.24 gi|330835767|ref|YP_004410495.1| - 1.1e-32 112.9 0.0 3.3e-32 111.5 0.0 1.7 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|330835767|ref|YP_004410495.1| - 1.7e-09 38.0 0.0 2.2e-09 37.7 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DUF853 PF05872.12 gi|330835769|ref|YP_004410497.1| - 1e-09 37.6 0.0 3.1e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|330835769|ref|YP_004410497.1| - 4.7e-08 32.3 0.1 5.4e-05 22.3 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.17 gi|330835769|ref|YP_004410497.1| - 1e-07 32.3 0.2 3.4e-07 30.6 0.0 2.0 2 1 0 2 2 2 1 Helicase HerA, central domain TrwB_AAD_bind PF10412.9 gi|330835769|ref|YP_004410497.1| - 2.9e-05 23.1 0.0 6.5e-05 22.0 0.0 1.5 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|330835769|ref|YP_004410497.1| - 0.00094 18.6 0.0 0.0029 17.0 0.0 1.7 2 0 0 2 2 2 1 FtsK/SpoIIIE family IstB_IS21 PF01695.17 gi|330835769|ref|YP_004410497.1| - 0.0086 15.8 0.0 0.031 14.0 0.0 1.9 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|330835769|ref|YP_004410497.1| - 0.01 16.1 0.0 0.079 13.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|330835769|ref|YP_004410497.1| - 0.014 15.4 0.0 0.033 14.2 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit TraG-D_C PF12696.7 gi|330835769|ref|YP_004410497.1| - 0.016 15.2 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 TraM recognition site of TraD and TraG ATPase_2 PF01637.18 gi|330835769|ref|YP_004410497.1| - 0.026 14.5 0.7 0.094 12.6 0.0 2.1 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|330835769|ref|YP_004410497.1| - 0.039 14.3 0.0 0.19 12.1 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.14 gi|330835769|ref|YP_004410497.1| - 0.042 13.8 0.0 0.13 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T4SS-DNA_transf PF02534.14 gi|330835769|ref|YP_004410497.1| - 0.064 12.0 0.0 0.46 9.2 0.0 1.9 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer Scm3 PF10384.9 gi|330835769|ref|YP_004410497.1| - 0.074 12.8 1.2 2 8.2 0.2 2.7 2 0 0 2 2 2 0 Centromere protein Scm3 AAA_23 PF13476.6 gi|330835769|ref|YP_004410497.1| - 0.13 12.8 3.1 0.66 10.4 0.1 2.2 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|330835769|ref|YP_004410497.1| - 0.17 10.9 0.0 0.36 9.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3527 PF12043.8 gi|330835771|ref|YP_004410499.1| - 0.014 15.0 0.0 0.02 14.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3527) NAD_binding_8 PF13450.6 gi|330835771|ref|YP_004410499.1| - 0.049 13.9 0.8 0.13 12.5 0.8 1.7 1 1 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DUF2321 PF10083.9 gi|330835771|ref|YP_004410499.1| - 0.11 12.2 0.0 0.6 9.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) DAO PF01266.24 gi|330835771|ref|YP_004410499.1| - 0.13 11.8 0.1 0.18 11.4 0.1 1.2 1 0 0 1 1 1 0 FAD dependent oxidoreductase zf-C2H2_4 PF13894.6 gi|330835773|ref|YP_004410501.1| - 6.6 7.8 5.8 12 7.1 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger NFACT-R_1 PF05670.13 gi|330835774|ref|YP_004410502.1| - 9.4e-25 87.4 0.0 2.7e-24 85.9 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain FbpA PF05833.11 gi|330835774|ref|YP_004410502.1| - 3.2e-21 75.6 14.0 7.3e-21 74.5 14.0 1.6 1 1 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_2 PF18297.1 gi|330835774|ref|YP_004410502.1| - 6.6e-05 23.1 0.1 0.0018 18.5 0.0 2.5 2 0 0 2 2 2 1 NFACT protein RNA binding domain LMBR1 PF04791.16 gi|330835774|ref|YP_004410502.1| - 0.31 9.9 1.3 0.37 9.6 1.3 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein LXG PF04740.12 gi|330835774|ref|YP_004410502.1| - 0.6 9.8 7.6 3.6 7.2 0.4 2.8 3 0 0 3 3 3 0 LXG domain of WXG superfamily V_ATPase_I PF01496.19 gi|330835774|ref|YP_004410502.1| - 0.95 7.3 6.4 1.5 6.6 5.8 1.6 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF4140 PF13600.6 gi|330835774|ref|YP_004410502.1| - 4 7.9 5.3 0.96 9.9 0.3 2.5 3 0 0 3 3 3 0 N-terminal domain of unknown function (DUF4140) DUF16 PF01519.16 gi|330835774|ref|YP_004410502.1| - 6.3 7.3 8.7 21 5.7 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function DUF16 DUF5379 PF17350.2 gi|330835775|ref|YP_004410503.1| - 0.13 12.6 9.1 1.3 9.4 9.1 2.0 1 1 0 1 1 1 0 Family of unknown function (DUF5379) Ribophorin_II PF05817.14 gi|330835775|ref|YP_004410503.1| - 0.54 8.7 3.1 0.66 8.4 3.1 1.0 1 0 0 1 1 1 0 Oligosaccharyltransferase subunit Ribophorin II Mut7-C PF01927.16 gi|330835776|ref|YP_004410504.1| - 1.1e-36 126.2 5.2 4.5e-34 117.6 5.2 2.1 1 1 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|330835776|ref|YP_004410504.1| - 3.1e-06 26.8 0.0 6.5e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) OrfB_Zn_ribbon PF07282.11 gi|330835776|ref|YP_004410504.1| - 7.3e-05 22.6 0.5 0.00014 21.7 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|330835776|ref|YP_004410504.1| - 0.0073 16.2 1.1 0.014 15.3 1.1 1.4 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Rep_fac-A_C PF08646.10 gi|330835776|ref|YP_004410504.1| - 0.016 14.9 0.7 0.029 14.1 0.7 1.5 1 0 0 1 1 1 0 Replication factor-A C terminal domain PIN_10 PF18478.1 gi|330835776|ref|YP_004410504.1| - 0.028 14.6 0.1 0.088 13.0 0.1 1.8 1 1 0 1 1 1 0 PIN like domain NRDD PF13597.6 gi|330835776|ref|YP_004410504.1| - 0.029 13.1 0.1 0.048 12.4 0.1 1.3 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase IBR PF01485.21 gi|330835776|ref|YP_004410504.1| - 0.032 14.4 0.6 0.032 14.4 0.6 1.6 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain HypA PF01155.19 gi|330835776|ref|YP_004410504.1| - 0.057 13.4 0.6 0.074 13.1 0.6 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|330835776|ref|YP_004410504.1| - 0.068 12.9 2.2 0.14 11.9 2.2 1.5 1 0 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein PHD_2 PF13831.6 gi|330835776|ref|YP_004410504.1| - 0.17 11.5 2.5 1.1 8.8 3.1 2.1 1 1 1 2 2 2 0 PHD-finger AMMECR1 PF01871.17 gi|330835777|ref|YP_004410505.1| - 7.1e-45 152.6 0.0 9e-45 152.3 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.6 gi|330835778|ref|YP_004410506.1| - 4.3e-30 103.6 2.7 1.8e-14 53.5 1.5 2.3 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|330835778|ref|YP_004410506.1| - 9.1e-07 28.8 0.6 0.012 15.6 0.3 2.2 2 0 0 2 2 2 2 Thioredoxin Glutaredoxin PF00462.24 gi|330835778|ref|YP_004410506.1| - 1.2e-05 25.5 2.9 0.0089 16.2 1.0 2.9 2 1 0 2 2 2 2 Glutaredoxin Thioredoxin_2 PF13098.6 gi|330835778|ref|YP_004410506.1| - 0.0002 21.7 7.1 0.015 15.7 0.5 3.7 2 2 0 2 2 2 1 Thioredoxin-like domain DSBA PF01323.20 gi|330835778|ref|YP_004410506.1| - 0.0088 15.8 0.1 4 7.2 0.0 2.5 2 1 0 2 2 2 2 DSBA-like thioredoxin domain OST3_OST6 PF04756.13 gi|330835778|ref|YP_004410506.1| - 0.021 14.2 0.0 0.11 11.8 0.0 1.8 1 1 0 2 2 2 0 OST3 / OST6 family, transporter family dCache_2 PF08269.11 gi|330835778|ref|YP_004410506.1| - 0.036 13.2 0.0 0.055 12.6 0.0 1.3 1 0 0 1 1 1 0 Cache domain Thioredoxin_4 PF13462.6 gi|330835778|ref|YP_004410506.1| - 0.11 12.7 4.0 6.1 7.0 0.0 2.9 2 2 0 3 3 3 0 Thioredoxin dUTPase PF00692.19 gi|330835780|ref|YP_004410508.1| - 1.4e-22 79.8 0.0 1.9e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|330835780|ref|YP_004410508.1| - 2e-08 33.4 0.0 5.1e-08 32.1 0.0 1.7 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DNA_ligase_A_M PF01068.21 gi|330835781|ref|YP_004410509.1| - 1.5e-60 204.4 0.8 2.3e-60 203.7 0.1 1.7 2 0 0 2 2 2 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|330835781|ref|YP_004410509.1| - 3.4e-39 134.9 0.4 7.2e-39 133.9 0.4 1.6 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|330835781|ref|YP_004410509.1| - 3.5e-26 91.7 0.0 6.3e-26 90.9 0.0 1.4 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|330835781|ref|YP_004410509.1| - 2.4e-07 31.2 0.1 4.8e-07 30.2 0.1 1.5 1 0 0 1 1 1 1 RNA ligase mRNA_cap_enzyme PF01331.19 gi|330835781|ref|YP_004410509.1| - 0.026 14.3 0.2 0.46 10.3 0.0 2.5 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain DNA_ligase_OB_2 PF14743.6 gi|330835781|ref|YP_004410509.1| - 0.032 14.3 0.2 4.6 7.3 0.0 2.7 3 0 0 3 3 3 0 DNA ligase OB-like domain Spore_Cse60 PF10957.8 gi|330835781|ref|YP_004410509.1| - 0.05 13.6 0.0 0.15 12.1 0.0 1.8 1 0 0 1 1 1 0 Sporulation protein Cse60 DUF2779 PF11074.8 gi|330835781|ref|YP_004410509.1| - 0.1 13.0 1.2 1.9 9.0 0.1 3.1 3 1 0 3 3 3 0 Domain of unknown function(DUF2779) BBS2_N PF14781.6 gi|330835781|ref|YP_004410509.1| - 0.15 12.0 0.1 0.35 10.8 0.1 1.6 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 2, N-terminal PHA_synth_III_E PF09712.10 gi|330835781|ref|YP_004410509.1| - 0.2 10.7 0.0 0.39 9.8 0.0 1.4 1 0 0 1 1 1 0 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Lactamase_B_2 PF12706.7 gi|330835782|ref|YP_004410510.1| - 0.0033 17.0 0.0 0.006 16.1 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Phage_min_tail PF05939.13 gi|330835782|ref|YP_004410510.1| - 0.013 15.9 0.2 0.054 13.9 0.0 2.0 2 0 0 2 2 2 0 Phage minor tail protein DRMBL PF07522.14 gi|330835782|ref|YP_004410510.1| - 0.014 15.6 0.1 0.032 14.4 0.1 1.5 1 0 0 1 1 1 0 DNA repair metallo-beta-lactamase RMMBL PF07521.12 gi|330835782|ref|YP_004410510.1| - 0.053 13.5 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Zn-dependent metallo-hydrolase RNA specificity domain Biotin_lipoyl_2 PF13533.6 gi|330835783|ref|YP_004410511.1| - 8e-21 73.6 4.4 1.3e-09 37.7 0.1 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like Biotin_lipoyl PF00364.22 gi|330835783|ref|YP_004410511.1| - 7.9e-19 67.3 3.4 2.7e-18 65.6 3.4 1.9 1 0 0 1 1 1 1 Biotin-requiring enzyme HlyD_D23 PF16576.5 gi|330835783|ref|YP_004410511.1| - 7.1e-08 31.9 0.6 0.003 16.8 0.0 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|330835783|ref|YP_004410511.1| - 9e-08 32.8 1.5 0.0016 19.1 0.1 2.9 3 0 0 3 3 3 2 HlyD family secretion protein GCV_H PF01597.19 gi|330835783|ref|YP_004410511.1| - 3.8e-05 23.6 0.5 9.9e-05 22.2 0.2 1.8 1 1 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|330835783|ref|YP_004410511.1| - 4e-05 23.5 2.6 0.00052 19.9 2.3 2.8 1 1 1 2 2 2 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|330835783|ref|YP_004410511.1| - 0.00037 20.0 0.8 0.0014 18.1 0.6 2.0 1 1 1 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) PTS_EIIA_1 PF00358.20 gi|330835783|ref|YP_004410511.1| - 0.0006 19.6 1.8 0.09 12.5 0.0 3.3 2 1 3 5 5 5 1 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 QRPTase_N PF02749.16 gi|330835783|ref|YP_004410511.1| - 0.0014 18.6 0.6 0.51 10.4 0.0 3.0 2 1 1 3 3 3 1 Quinolinate phosphoribosyl transferase, N-terminal domain PYNP_C PF07831.13 gi|330835783|ref|YP_004410511.1| - 0.0017 18.0 0.8 0.27 10.9 0.0 2.6 1 1 1 2 2 2 1 Pyrimidine nucleoside phosphorylase C-terminal domain YqfD PF06898.11 gi|330835783|ref|YP_004410511.1| - 0.0042 16.0 2.7 1 8.1 0.1 2.3 1 1 1 2 2 2 2 Putative stage IV sporulation protein YqfD Peptidase_M23 PF01551.22 gi|330835783|ref|YP_004410511.1| - 0.012 15.9 1.5 0.42 10.9 1.5 3.0 1 1 0 1 1 1 0 Peptidase family M23 DDE_Tnp_ISAZ013 PF07592.11 gi|330835783|ref|YP_004410511.1| - 0.019 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain DUF2118 PF09891.9 gi|330835783|ref|YP_004410511.1| - 0.036 14.0 0.7 0.19 11.7 0.3 2.2 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) TGS PF02824.21 gi|330835783|ref|YP_004410511.1| - 0.058 13.5 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 TGS domain CPSase_L_D2 PF02786.17 gi|330835784|ref|YP_004410512.1| - 1.6e-59 200.9 0.0 2.4e-59 200.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|330835784|ref|YP_004410512.1| - 6.6e-44 149.0 0.2 1.1e-43 148.3 0.2 1.3 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|330835784|ref|YP_004410512.1| - 4.5e-36 123.2 0.0 8.2e-36 122.4 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|330835784|ref|YP_004410512.1| - 1e-06 28.4 0.0 6e-06 25.9 0.0 2.0 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|330835784|ref|YP_004410512.1| - 0.0021 17.6 0.0 0.0085 15.7 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain TBPIP PF07106.13 gi|330835784|ref|YP_004410512.1| - 0.024 14.6 0.0 4 7.4 0.0 2.5 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain ATP-grasp_3 PF02655.14 gi|330835784|ref|YP_004410512.1| - 0.038 14.0 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|330835784|ref|YP_004410512.1| - 0.068 12.4 0.0 0.14 11.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-transfer associated ATP-grasp Acetyltransf_1 PF00583.25 gi|330835785|ref|YP_004410513.1| - 2.5e-19 69.6 0.1 3.1e-19 69.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|330835785|ref|YP_004410513.1| - 4.5e-13 49.4 0.1 7.2e-13 48.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|330835785|ref|YP_004410513.1| - 9.3e-12 45.0 0.0 1.6e-11 44.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|330835785|ref|YP_004410513.1| - 3.8e-10 39.6 0.0 5.8e-10 39.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|330835785|ref|YP_004410513.1| - 8.1e-06 25.9 0.1 0.0015 18.6 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|330835785|ref|YP_004410513.1| - 0.00018 21.7 0.6 0.00069 19.8 0.6 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|330835785|ref|YP_004410513.1| - 0.00025 20.6 0.3 0.00029 20.4 0.3 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_8 PF13523.6 gi|330835785|ref|YP_004410513.1| - 0.00034 20.3 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|330835785|ref|YP_004410513.1| - 0.0052 17.5 0.0 0.0075 16.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|330835785|ref|YP_004410513.1| - 0.095 12.4 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ DFP PF04127.15 gi|330835786|ref|YP_004410514.1| - 2.8e-57 193.6 0.5 4.7e-55 186.3 0.1 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|330835786|ref|YP_004410514.1| - 8.9e-36 123.0 0.3 2.8e-35 121.4 0.1 1.8 2 0 0 2 2 2 1 Flavoprotein DUF1699 PF08004.11 gi|330835786|ref|YP_004410514.1| - 0.023 14.4 0.6 3.6 7.3 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1699) DHDPS PF00701.22 gi|330835786|ref|YP_004410514.1| - 0.064 12.0 0.1 0.31 9.7 0.0 2.0 1 1 1 2 2 2 0 Dihydrodipicolinate synthetase family AA_synth PF06684.11 gi|330835786|ref|YP_004410514.1| - 0.091 12.3 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Amino acid synthesis Glycos_transf_1 PF00534.20 gi|330835787|ref|YP_004410515.1| - 2.7e-24 85.6 0.0 4e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|330835787|ref|YP_004410515.1| - 2.9e-10 40.7 0.0 5e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|330835787|ref|YP_004410515.1| - 2.1e-06 28.0 0.0 3.7e-06 27.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 FDX-ACB PF03147.14 gi|330835788|ref|YP_004410516.1| - 0.059 13.8 0.0 12 6.4 0.0 2.8 2 0 0 2 2 2 0 Ferredoxin-fold anticodon binding domain TIM PF00121.18 gi|330835789|ref|YP_004410517.1| - 0.038 13.4 0.0 1.1 8.5 0.0 2.0 1 1 1 2 2 2 0 Triosephosphate isomerase CitG PF01874.16 gi|330835790|ref|YP_004410518.1| - 2.5e-36 125.8 0.0 3.1e-36 125.5 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase NTP_transf_2 PF01909.23 gi|330835791|ref|YP_004410519.1| - 0.00028 21.1 0.1 0.00059 20.1 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF4269 PF14091.6 gi|330835791|ref|YP_004410519.1| - 0.13 12.5 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4269) Polbeta PF18765.1 gi|330835791|ref|YP_004410519.1| - 0.14 12.3 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase DUF1464 PF07318.12 gi|330835792|ref|YP_004410520.1| - 7.3e-91 304.7 0.4 9.1e-91 304.4 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) RuvX PF03652.15 gi|330835792|ref|YP_004410520.1| - 0.048 14.0 0.0 0.09 13.2 0.0 1.4 1 0 0 1 1 1 0 Holliday junction resolvase ATP13 PF12921.7 gi|330835792|ref|YP_004410520.1| - 0.1 12.5 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 Mitochondrial ATPase expression ATP-grasp PF02222.22 gi|330835793|ref|YP_004410521.1| - 0.095 12.3 0.0 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 ATP-grasp domain Retrotran_gag_2 PF14223.6 gi|330835793|ref|YP_004410521.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type Archease PF01951.16 gi|330835795|ref|YP_004410523.1| - 3.1e-43 147.3 0.8 3.4e-43 147.2 0.8 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) PAGK PF15284.6 gi|330835796|ref|YP_004410524.1| - 0.32 10.9 1.7 0.45 10.5 1.7 1.2 1 0 0 1 1 1 0 Phage-encoded virulence factor DUF5455 PF17537.2 gi|330835797|ref|YP_004410525.1| - 0.21 12.0 0.0 0.21 12.0 0.0 3.3 2 2 1 3 3 3 0 Family of unknown function (DUF5455) Cytidylate_kin2 PF13189.6 gi|330835799|ref|YP_004410527.1| - 3.6e-23 82.6 0.7 2.3e-16 60.5 0.3 2.0 1 1 1 2 2 2 2 Cytidylate kinase-like family AAA_18 PF13238.6 gi|330835799|ref|YP_004410527.1| - 4.2e-15 56.4 0.0 6.1e-15 55.9 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|330835799|ref|YP_004410527.1| - 1e-12 48.7 0.0 1.8e-12 47.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|330835799|ref|YP_004410527.1| - 1.9e-12 47.4 0.3 1.7e-06 27.9 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase SKI PF01202.22 gi|330835799|ref|YP_004410527.1| - 3.4e-08 33.8 0.2 5.3e-08 33.1 0.2 1.3 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|330835799|ref|YP_004410527.1| - 1.7e-05 24.8 1.6 0.027 14.3 0.1 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_33 PF13671.6 gi|330835799|ref|YP_004410527.1| - 4.6e-05 23.6 0.1 0.00062 19.9 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330835799|ref|YP_004410527.1| - 5.6e-05 23.6 0.0 0.00036 21.0 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ADK PF00406.22 gi|330835799|ref|YP_004410527.1| - 8.3e-05 22.7 0.0 0.00014 22.0 0.0 1.4 1 0 0 1 1 1 1 Adenylate kinase AAA_28 PF13521.6 gi|330835799|ref|YP_004410527.1| - 0.00071 19.9 0.0 0.0011 19.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|330835799|ref|YP_004410527.1| - 0.0014 19.2 0.0 0.0019 18.7 0.1 1.4 1 1 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|330835799|ref|YP_004410527.1| - 0.0014 19.0 0.2 0.0022 18.4 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|330835799|ref|YP_004410527.1| - 0.0026 18.3 1.1 0.004 17.7 1.1 1.4 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|330835799|ref|YP_004410527.1| - 0.0026 17.5 0.2 0.62 9.7 0.2 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase PRK PF00485.18 gi|330835799|ref|YP_004410527.1| - 0.0041 16.9 0.1 0.0061 16.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.6 gi|330835799|ref|YP_004410527.1| - 0.0049 17.1 0.0 0.0074 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|330835799|ref|YP_004410527.1| - 0.011 14.8 0.5 0.022 13.8 0.5 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein Rad17 PF03215.15 gi|330835799|ref|YP_004410527.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TIP49 PF06068.13 gi|330835799|ref|YP_004410527.1| - 0.016 14.5 0.5 0.033 13.4 0.5 1.6 1 1 0 1 1 1 0 TIP49 P-loop domain NB-ARC PF00931.22 gi|330835799|ref|YP_004410527.1| - 0.017 14.4 0.2 0.032 13.4 0.2 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|330835799|ref|YP_004410527.1| - 0.021 14.8 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|330835799|ref|YP_004410527.1| - 0.023 14.5 0.0 0.05 13.4 0.0 1.5 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|330835799|ref|YP_004410527.1| - 0.027 14.4 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.22 gi|330835799|ref|YP_004410527.1| - 0.033 14.6 0.0 0.057 13.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CbiA PF01656.23 gi|330835799|ref|YP_004410527.1| - 0.04 14.0 0.4 0.12 12.4 0.4 1.7 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.6 gi|330835799|ref|YP_004410527.1| - 0.048 13.4 0.0 0.064 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|330835799|ref|YP_004410527.1| - 0.059 13.4 0.7 0.098 12.7 0.1 1.7 2 1 0 2 2 1 0 AAA domain APS_kinase PF01583.20 gi|330835799|ref|YP_004410527.1| - 0.064 13.1 0.1 0.23 11.3 0.1 1.8 2 0 0 2 2 2 0 Adenylylsulphate kinase cobW PF02492.19 gi|330835799|ref|YP_004410527.1| - 0.07 12.7 0.5 0.28 10.8 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CPT PF07931.12 gi|330835799|ref|YP_004410527.1| - 0.073 12.9 0.5 0.71 9.7 0.2 2.2 2 1 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein AAA_29 PF13555.6 gi|330835799|ref|YP_004410527.1| - 0.087 12.6 0.3 0.23 11.2 0.3 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|330835799|ref|YP_004410527.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 NTPase TsaE PF02367.17 gi|330835799|ref|YP_004410527.1| - 0.12 12.3 0.1 0.17 11.9 0.1 1.4 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|330835799|ref|YP_004410527.1| - 0.14 11.4 0.4 0.35 10.1 0.2 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.6 gi|330835799|ref|YP_004410527.1| - 0.23 11.2 0.1 0.43 10.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain EMC3_TMCO1 PF01956.16 gi|330835800|ref|YP_004410528.1| - 0.0012 18.6 1.1 0.0018 18.1 1.1 1.3 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF2207 PF09972.9 gi|330835800|ref|YP_004410528.1| - 0.014 14.2 2.8 0.017 13.9 2.8 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2718 PF10918.8 gi|330835800|ref|YP_004410528.1| - 0.034 14.6 2.9 0.034 14.6 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2718) FadA PF09403.10 gi|330835800|ref|YP_004410528.1| - 0.046 14.2 3.6 0.071 13.6 3.6 1.2 1 0 0 1 1 1 0 Adhesion protein FadA Sm_multidrug_ex PF06695.11 gi|330835800|ref|YP_004410528.1| - 0.21 12.3 4.8 0.17 12.6 3.2 1.7 1 1 1 2 2 2 0 Putative small multi-drug export protein S_4TM PF18159.1 gi|330835800|ref|YP_004410528.1| - 0.26 10.5 3.1 1.1 8.5 0.4 2.1 1 1 0 2 2 2 0 SMODS-associating 4TM effector domain UPF0114 PF03350.16 gi|330835800|ref|YP_004410528.1| - 4.4 7.5 8.9 0.26 11.5 1.3 2.1 1 1 0 2 2 2 0 Uncharacterized protein family, UPF0114 AAA_17 PF13207.6 gi|330835801|ref|YP_004410529.1| - 8.4e-32 110.4 0.0 1.1e-31 110.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|330835801|ref|YP_004410529.1| - 2.5e-06 27.3 0.1 0.069 12.8 0.0 2.3 2 1 0 2 2 2 2 Thymidylate kinase AAA_18 PF13238.6 gi|330835801|ref|YP_004410529.1| - 5.1e-06 27.1 0.0 7.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|330835801|ref|YP_004410529.1| - 0.00027 21.4 0.0 0.00037 20.9 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.10 gi|330835801|ref|YP_004410529.1| - 0.00039 20.0 0.0 0.00055 19.5 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|330835801|ref|YP_004410529.1| - 0.0011 18.9 0.3 0.0021 18.0 0.3 1.4 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|330835801|ref|YP_004410529.1| - 0.0015 18.3 0.1 0.0035 17.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|330835801|ref|YP_004410529.1| - 0.002 18.4 0.0 0.0028 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|330835801|ref|YP_004410529.1| - 0.0026 17.1 0.0 0.0039 16.5 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.6 gi|330835801|ref|YP_004410529.1| - 0.0057 16.9 0.0 0.0079 16.4 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|330835801|ref|YP_004410529.1| - 0.0091 16.3 0.3 0.0099 16.2 0.3 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|330835801|ref|YP_004410529.1| - 0.018 15.5 0.0 0.036 14.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATP_bind_1 PF03029.17 gi|330835801|ref|YP_004410529.1| - 0.018 14.8 0.1 0.027 14.3 0.1 1.5 1 1 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_5 PF07728.14 gi|330835801|ref|YP_004410529.1| - 0.019 15.0 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|330835801|ref|YP_004410529.1| - 0.021 14.9 0.1 0.033 14.2 0.1 1.4 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|330835801|ref|YP_004410529.1| - 0.022 14.4 0.0 0.05 13.2 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cobW PF02492.19 gi|330835801|ref|YP_004410529.1| - 0.026 14.1 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DnaB_C PF03796.15 gi|330835801|ref|YP_004410529.1| - 0.032 13.6 0.0 0.045 13.1 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain PRK PF00485.18 gi|330835801|ref|YP_004410529.1| - 0.036 13.8 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family MeaB PF03308.16 gi|330835801|ref|YP_004410529.1| - 0.045 12.7 0.1 0.068 12.1 0.1 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|330835801|ref|YP_004410529.1| - 0.12 12.1 0.2 0.3 10.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|330835801|ref|YP_004410529.1| - 0.12 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.18 gi|330835801|ref|YP_004410529.1| - 0.16 11.7 0.0 0.25 11.0 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SecY PF00344.20 gi|330835802|ref|YP_004410530.1| - 2.4e-58 197.8 26.7 3.1e-58 197.5 26.7 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|330835802|ref|YP_004410530.1| - 3e-09 36.6 1.3 1.3e-08 34.6 0.6 2.6 2 0 0 2 2 2 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|330835803|ref|YP_004410531.1| - 7.3e-18 65.5 5.1 1.4e-17 64.6 5.1 1.5 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DUF3785 PF12653.7 gi|330835803|ref|YP_004410531.1| - 0.058 13.5 0.0 0.51 10.4 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3785) Ribosomal_L30 PF00327.20 gi|330835804|ref|YP_004410532.1| - 6.3e-10 38.8 0.0 1e-09 38.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e DUF1421 PF07223.11 gi|330835804|ref|YP_004410532.1| - 0.1 12.5 0.3 0.4 10.5 0.0 2.1 3 0 0 3 3 3 0 UBA-like domain (DUF1421) Ribosomal_S5 PF00333.20 gi|330835805|ref|YP_004410533.1| - 1.3e-22 79.5 1.1 2.8e-22 78.5 1.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|330835805|ref|YP_004410533.1| - 9.3e-21 73.1 0.0 2.2e-20 71.9 0.0 1.6 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|330835806|ref|YP_004410534.1| - 1.9e-29 102.8 5.3 9.8e-21 74.4 2.8 2.5 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|330835806|ref|YP_004410534.1| - 2.5e-13 50.8 0.0 4.5e-13 50.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|330835806|ref|YP_004410534.1| - 0.0048 17.2 0.1 0.021 15.2 0.0 1.8 2 0 0 2 2 2 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|330835807|ref|YP_004410535.1| - 8.6e-46 155.6 12.6 9.9e-46 155.4 12.6 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L32e PF01655.18 gi|330835808|ref|YP_004410536.1| - 4.1e-35 120.5 0.1 5.6e-35 120.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L6 PF00347.23 gi|330835809|ref|YP_004410537.1| - 2e-28 98.8 4.9 5.2e-15 55.9 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 DNA_pol3_beta PF00712.19 gi|330835809|ref|YP_004410537.1| - 0.0034 17.5 0.7 0.64 10.2 0.1 2.2 2 0 0 2 2 2 2 DNA polymerase III beta subunit, N-terminal domain Ribosomal_S8 PF00410.19 gi|330835810|ref|YP_004410538.1| - 1.2e-24 86.6 0.1 1.6e-24 86.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|330835811|ref|YP_004410539.1| - 4.5e-11 42.3 1.9 4.8e-11 42.2 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DZR PF12773.7 gi|330835811|ref|YP_004410539.1| - 0.027 14.5 0.4 0.035 14.1 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon RecR PF02132.15 gi|330835811|ref|YP_004410539.1| - 1.1 8.9 4.8 16 5.2 5.1 2.0 1 1 0 1 1 1 0 RecR protein Ribosomal_L5_C PF00673.21 gi|330835812|ref|YP_004410540.1| - 9.1e-26 89.9 0.0 1.9e-25 88.9 0.0 1.6 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|330835812|ref|YP_004410540.1| - 4.3e-21 75.0 0.1 7.8e-21 74.2 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S4e PF00900.20 gi|330835813|ref|YP_004410541.1| - 4.5e-19 68.1 0.0 8.2e-19 67.3 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e S4 PF01479.25 gi|330835813|ref|YP_004410541.1| - 1.2e-10 40.9 0.0 2.3e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 S4 domain RS4NT PF08071.12 gi|330835813|ref|YP_004410541.1| - 9.9e-07 28.8 2.2 1.8e-06 28.0 2.2 1.4 1 0 0 1 1 1 1 RS4NT (NUC023) domain KOW PF00467.29 gi|330835813|ref|YP_004410541.1| - 0.00045 20.1 0.2 0.001 18.9 0.2 1.7 1 0 0 1 1 1 1 KOW motif Ribosomal_L26 PF16906.5 gi|330835814|ref|YP_004410542.1| - 6.4e-17 61.8 0.2 8.9e-17 61.3 0.2 1.2 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|330835814|ref|YP_004410542.1| - 1.7e-06 27.8 0.8 1.7e-06 27.8 0.8 2.0 2 0 0 2 2 2 1 KOW motif DUF4342 PF14242.6 gi|330835814|ref|YP_004410542.1| - 0.067 13.2 0.6 0.12 12.3 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4342) Ribosomal_L14 PF00238.19 gi|330835815|ref|YP_004410543.1| - 7.4e-37 126.1 0.1 9.3e-37 125.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|330835815|ref|YP_004410543.1| - 0.13 12.6 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 PAS fold Ribosomal_S17 PF00366.20 gi|330835816|ref|YP_004410544.1| - 4e-20 71.7 0.4 5e-20 71.4 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 UPF0086 PF01868.16 gi|330835817|ref|YP_004410545.1| - 1.1e-12 47.7 0.0 1.1e-12 47.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|330835818|ref|YP_004410546.1| - 1.2e-17 63.6 8.3 1.4e-17 63.3 8.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Phe_tRNA-synt_N PF02912.18 gi|330835818|ref|YP_004410546.1| - 0.0037 17.2 1.9 0.0052 16.7 1.0 1.8 1 1 0 1 1 1 1 Aminoacyl tRNA synthetase class II, N-terminal domain AIP3 PF03915.13 gi|330835818|ref|YP_004410546.1| - 0.0069 15.5 1.4 0.0073 15.5 1.4 1.0 1 0 0 1 1 1 1 Actin interacting protein 3 BEN PF10523.9 gi|330835818|ref|YP_004410546.1| - 0.031 14.5 0.4 0.034 14.4 0.4 1.1 1 0 0 1 1 1 0 BEN domain DUF1192 PF06698.11 gi|330835818|ref|YP_004410546.1| - 0.36 10.9 7.8 0.82 9.8 2.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1192) DUF1690 PF07956.11 gi|330835818|ref|YP_004410546.1| - 0.5 10.8 6.3 0.58 10.6 6.3 1.0 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) Ribosomal_S3_C PF00189.20 gi|330835819|ref|YP_004410547.1| - 2.6e-21 75.9 2.4 4.9e-21 75.0 2.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|330835819|ref|YP_004410547.1| - 4.5e-14 52.0 0.0 1.2e-13 50.7 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_4 PF13083.6 gi|330835819|ref|YP_004410547.1| - 0.062 13.2 0.4 0.14 12.0 0.0 1.9 2 0 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.19 gi|330835820|ref|YP_004410548.1| - 5.7e-28 97.2 0.8 6.6e-28 97.0 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|330835821|ref|YP_004410549.1| - 4.3e-29 100.2 0.2 5.8e-29 99.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 bZIP_Maf PF03131.17 gi|330835821|ref|YP_004410549.1| - 0.14 12.7 1.1 0.24 11.9 1.1 1.3 1 0 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L2_C PF03947.18 gi|330835822|ref|YP_004410550.1| - 1.6e-38 131.8 1.4 2.7e-38 131.0 1.4 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|330835822|ref|YP_004410550.1| - 4.3e-13 49.0 0.1 1.4e-12 47.4 0.1 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain DUF4648 PF15505.6 gi|330835822|ref|YP_004410550.1| - 0.11 13.4 1.0 1.6 9.7 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4648) Ribosomal_L23 PF00276.20 gi|330835823|ref|YP_004410551.1| - 3.2e-14 53.0 5.1 1.4e-13 51.0 5.1 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 DUF5025 PF16428.5 gi|330835823|ref|YP_004410551.1| - 0.033 14.4 0.2 0.037 14.2 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5025) Ribosomal_L4 PF00573.22 gi|330835824|ref|YP_004410552.1| - 2.6e-34 118.6 0.0 3.1e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|330835825|ref|YP_004410553.1| - 1.8e-73 247.7 0.0 2.1e-73 247.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L3 Dicty_CAD PF05720.12 gi|330835825|ref|YP_004410553.1| - 0.0078 16.2 0.4 0.048 13.6 0.0 2.5 3 0 0 3 3 3 1 Cell-cell adhesion domain Prefoldin_2 PF01920.20 gi|330835825|ref|YP_004410553.1| - 0.015 15.3 0.7 0.026 14.5 0.7 1.3 1 0 0 1 1 1 0 Prefoldin subunit T4SS_TraI PF16932.5 gi|330835825|ref|YP_004410553.1| - 0.028 13.6 0.0 0.21 10.7 0.0 2.1 2 0 0 2 2 2 0 Type IV secretory system, conjugal DNA-protein transfer Methyltrn_RNA_3 PF02598.17 gi|330835826|ref|YP_004410554.1| - 4.8e-09 36.1 0.1 6.3e-06 25.9 0.0 2.2 1 1 0 2 2 2 2 Putative RNA methyltransferase tRNA-synt_1 PF00133.22 gi|330835827|ref|YP_004410555.1| - 4.5e-176 586.7 0.7 5.8e-176 586.3 0.7 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|330835827|ref|YP_004410555.1| - 2e-23 83.0 2.2 4.9e-23 81.8 2.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|330835827|ref|YP_004410555.1| - 3.9e-19 68.7 0.2 1.3e-06 27.5 0.0 4.1 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|330835827|ref|YP_004410555.1| - 0.00022 20.8 0.0 0.00057 19.4 0.0 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1f PF01921.18 gi|330835827|ref|YP_004410555.1| - 0.0028 16.7 0.0 0.0059 15.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (K) partial_CstF PF15861.5 gi|330835827|ref|YP_004410555.1| - 0.72 9.7 3.7 9.3 6.1 0.2 3.0 3 0 0 3 3 3 0 Partial cleavage stimulation factor domain Iso_dh PF00180.20 gi|330835828|ref|YP_004410556.1| - 1.7e-96 323.4 0.3 2e-96 323.2 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|330835828|ref|YP_004410556.1| - 0.023 14.1 0.0 0.091 12.1 0.0 1.9 2 0 0 2 2 2 0 Pyridoxal phosphate biosynthetic protein PdxA UVR PF02151.19 gi|330835828|ref|YP_004410556.1| - 0.8 9.5 2.9 0.9 9.4 0.9 2.0 2 0 0 2 2 2 0 UvrB/uvrC motif DUF447 PF04289.12 gi|330835829|ref|YP_004410557.1| - 3.1e-28 98.7 0.0 3.8e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) HAD_2 PF13419.6 gi|330835831|ref|YP_004410559.1| - 7.7e-28 97.8 0.1 2.1e-27 96.4 0.1 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|330835831|ref|YP_004410559.1| - 6.7e-17 62.5 0.0 3e-16 60.4 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|330835831|ref|YP_004410559.1| - 1.4e-09 37.9 0.0 2.4e-09 37.1 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|330835831|ref|YP_004410559.1| - 0.0016 18.5 0.0 0.056 13.6 0.0 2.7 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|330835831|ref|YP_004410559.1| - 0.0067 16.8 0.0 0.014 15.8 0.0 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase GTP_EFTU PF00009.27 gi|330835832|ref|YP_004410560.1| - 4.5e-61 205.8 0.2 4.5e-61 205.8 0.2 1.6 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|330835832|ref|YP_004410560.1| - 9.8e-30 102.8 0.0 6.9e-29 100.1 0.0 2.5 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|330835832|ref|YP_004410560.1| - 2.7e-23 81.8 0.1 7.4e-23 80.4 0.1 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|330835832|ref|YP_004410560.1| - 1e-22 80.0 0.0 2.8e-22 78.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|330835832|ref|YP_004410560.1| - 7.4e-13 48.7 0.4 3e-12 46.8 0.0 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|330835832|ref|YP_004410560.1| - 0.0007 19.7 0.1 0.002 18.2 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|330835832|ref|YP_004410560.1| - 0.039 13.8 0.0 0.077 12.8 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain SRPRB PF09439.10 gi|330835832|ref|YP_004410560.1| - 0.082 12.3 0.0 0.32 10.4 0.0 2.0 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit ERCC4 PF02732.15 gi|330835833|ref|YP_004410561.1| - 3.4e-22 79.3 0.1 6.9e-22 78.3 0.1 1.5 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.6 gi|330835833|ref|YP_004410561.1| - 0.00088 19.8 0.0 0.0021 18.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|330835833|ref|YP_004410561.1| - 0.0019 18.8 0.0 0.0045 17.6 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_2 PF12826.7 gi|330835833|ref|YP_004410561.1| - 0.0047 17.0 0.0 0.017 15.2 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif PND PF17949.1 gi|330835833|ref|YP_004410561.1| - 0.11 12.7 0.2 0.22 11.7 0.2 1.6 1 1 0 1 1 1 0 FANCM pseudonuclease domain Prefoldin_2 PF01920.20 gi|330835834|ref|YP_004410562.1| - 3.7e-23 81.5 17.9 4.1e-23 81.3 17.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Laminin_II PF06009.12 gi|330835834|ref|YP_004410562.1| - 0.036 14.1 7.1 0.16 12.0 0.2 2.1 1 1 1 2 2 2 0 Laminin Domain II Thiamine_BP PF01910.17 gi|330835834|ref|YP_004410562.1| - 0.048 13.6 0.0 0.076 12.9 0.0 1.4 1 0 0 1 1 1 0 Thiamine-binding protein KELK PF15796.5 gi|330835834|ref|YP_004410562.1| - 0.051 14.0 14.3 0.55 10.7 0.4 2.4 2 1 0 2 2 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase TPR_MLP1_2 PF07926.12 gi|330835834|ref|YP_004410562.1| - 0.084 12.9 14.6 0.36 10.9 14.6 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein Snf7 PF03357.21 gi|330835834|ref|YP_004410562.1| - 0.26 10.9 0.1 0.26 10.9 0.1 2.1 2 0 0 2 2 2 0 Snf7 ZapB PF06005.12 gi|330835834|ref|YP_004410562.1| - 0.62 10.5 16.1 5.9 7.4 0.3 2.7 1 1 1 2 2 2 0 Cell division protein ZapB FlaC_arch PF05377.11 gi|330835834|ref|YP_004410562.1| - 0.62 10.5 7.5 8.2 6.9 0.3 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) UPF0449 PF15136.6 gi|330835834|ref|YP_004410562.1| - 0.7 10.4 10.2 0.035 14.6 2.5 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0449 DUF3552 PF12072.8 gi|330835834|ref|YP_004410562.1| - 3.7 6.9 12.4 0.17 11.3 4.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) MerR-DNA-bind PF09278.11 gi|330835834|ref|YP_004410562.1| - 5.1 7.7 9.5 3.6 8.2 0.6 2.5 3 0 0 3 3 3 0 MerR, DNA binding ADIP PF11559.8 gi|330835834|ref|YP_004410562.1| - 6.6 6.8 14.3 4.5 7.3 1.7 2.1 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding zf-Sec23_Sec24 PF04810.15 gi|330835835|ref|YP_004410563.1| - 0.082 13.0 0.2 0.13 12.3 0.2 1.4 1 0 0 1 1 1 0 Sec23/Sec24 zinc finger Ribosomal_L37ae PF01780.19 gi|330835836|ref|YP_004410564.1| - 4.7e-24 84.3 5.3 5e-24 84.2 5.3 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|330835836|ref|YP_004410564.1| - 3.7e-05 23.6 2.1 5.9e-05 22.9 2.1 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|330835836|ref|YP_004410564.1| - 0.00046 20.1 1.0 0.00061 19.7 1.0 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|330835836|ref|YP_004410564.1| - 0.0025 17.3 0.1 0.0036 16.8 0.1 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|330835836|ref|YP_004410564.1| - 0.0027 17.3 0.3 0.0042 16.8 0.3 1.2 1 0 0 1 1 1 1 A2L zinc ribbon domain DUF4379 PF14311.6 gi|330835836|ref|YP_004410564.1| - 0.0043 17.4 5.2 0.36 11.2 0.6 2.2 2 0 0 2 2 2 2 Probable Zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|330835836|ref|YP_004410564.1| - 0.012 16.0 0.4 0.015 15.6 0.4 1.2 1 0 0 1 1 1 0 DnaJ central domain Prok-RING_2 PF14445.6 gi|330835836|ref|YP_004410564.1| - 0.026 14.7 0.9 0.054 13.7 0.9 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 zf_Rg PF17915.1 gi|330835836|ref|YP_004410564.1| - 0.043 13.2 0.3 0.059 12.8 0.3 1.2 1 0 0 1 1 1 0 Reverse gyrase zinc finger zf-TFIIB PF13453.6 gi|330835836|ref|YP_004410564.1| - 0.058 12.7 0.5 0.084 12.2 0.5 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger DciA PF05258.12 gi|330835836|ref|YP_004410564.1| - 0.083 13.3 0.0 0.095 13.1 0.0 1.1 1 0 0 1 1 1 0 Dna[CI] antecedent, DciA Rep_fac-A_C PF08646.10 gi|330835836|ref|YP_004410564.1| - 0.097 12.4 1.1 0.11 12.3 1.1 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain CpXC PF14353.6 gi|330835836|ref|YP_004410564.1| - 0.18 11.9 1.8 1.2 9.2 0.1 2.0 1 1 0 2 2 2 0 CpXC protein RNase_PH PF01138.21 gi|330835837|ref|YP_004410565.1| - 4.5e-32 111.3 0.0 1.6e-31 109.6 0.0 1.7 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|330835837|ref|YP_004410565.1| - 2.1e-08 34.1 0.1 8.3e-08 32.2 0.0 2.0 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|330835838|ref|YP_004410566.1| - 2e-36 125.4 0.0 2.6e-36 125.0 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|330835838|ref|YP_004410566.1| - 1.5e-13 50.6 0.0 2.8e-13 49.7 0.0 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 HET-S PF17108.5 gi|330835838|ref|YP_004410566.1| - 0.07 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 N-terminal small S protein of HET, non-prionic KH_6 PF15985.5 gi|330835839|ref|YP_004410567.1| - 2.8e-06 27.6 0.0 5.3e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 KH domain S1 PF00575.23 gi|330835839|ref|YP_004410567.1| - 0.00021 21.6 0.0 0.00048 20.4 0.0 1.7 2 0 0 2 2 2 1 S1 RNA binding domain KH_1 PF00013.29 gi|330835839|ref|YP_004410567.1| - 0.02 14.7 0.1 0.082 12.8 0.0 2.1 1 1 1 2 2 2 0 KH domain SBDS PF01172.18 gi|330835840|ref|YP_004410568.1| - 1.3e-22 79.6 0.2 2.4e-22 78.8 0.2 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|330835840|ref|YP_004410568.1| - 1.5e-20 73.3 1.4 2.3e-20 72.7 1.4 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|330835840|ref|YP_004410568.1| - 0.00034 20.6 0.0 0.0018 18.2 0.0 2.0 2 0 0 2 2 2 1 Elongation factor G C-terminus Proteasome PF00227.26 gi|330835841|ref|YP_004410569.1| - 2.5e-58 196.7 0.0 3.7e-58 196.2 0.0 1.3 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|330835841|ref|YP_004410569.1| - 2.4e-13 49.5 1.0 8.5e-13 47.7 0.5 2.1 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature CAT_RBD PF03123.15 gi|330835841|ref|YP_004410569.1| - 0.043 13.8 0.1 0.27 11.2 0.0 2.1 2 0 0 2 2 2 0 CAT RNA binding domain RNase_P_Rpp14 PF01900.19 gi|330835842|ref|YP_004410570.1| - 6.5e-10 39.2 0.0 7.3e-10 39.0 0.0 1.0 1 0 0 1 1 1 1 Rpp14/Pop5 family RNA_binding PF01877.17 gi|330835843|ref|YP_004410571.1| - 1.4e-28 99.6 0.5 1.7e-28 99.3 0.5 1.1 1 0 0 1 1 1 1 RNA binding Ribosomal_L15e PF00827.17 gi|330835844|ref|YP_004410572.1| - 7.6e-69 231.3 7.9 9.9e-69 230.9 7.9 1.2 1 0 0 1 1 1 1 Ribosomal L15 Rpn9_C PF18261.1 gi|330835844|ref|YP_004410572.1| - 0.02 14.5 0.1 0.037 13.6 0.1 1.4 1 0 0 1 1 1 0 Rpn9 C-terminal helix MMR_HSR1_C PF08438.10 gi|330835845|ref|YP_004410573.1| - 4e-37 127.2 0.1 6.3e-37 126.6 0.1 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|330835845|ref|YP_004410573.1| - 7e-21 74.4 0.0 2.1e-20 72.9 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|330835845|ref|YP_004410573.1| - 2.7e-13 49.8 0.0 4.6e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|330835845|ref|YP_004410573.1| - 4.3e-06 26.3 0.0 6.4e-05 22.5 0.1 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|330835845|ref|YP_004410573.1| - 0.00074 19.7 0.9 1.2 9.4 0.0 3.1 2 1 1 3 3 3 2 Protein of unknown function (DUF933) MMR_HSR1_Xtn PF16897.5 gi|330835845|ref|YP_004410573.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Hexapep PF00132.24 gi|330835846|ref|YP_004410574.1| - 5.8e-24 82.9 20.0 2.4e-08 33.4 0.2 4.4 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transferase PF00483.23 gi|330835846|ref|YP_004410574.1| - 3.2e-23 82.6 0.0 4e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep_2 PF14602.6 gi|330835846|ref|YP_004410574.1| - 5.9e-09 35.5 8.9 2.6e-05 23.9 0.0 3.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase NTP_transf_3 PF12804.7 gi|330835846|ref|YP_004410574.1| - 2.9e-07 31.0 0.0 4.2e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|330835846|ref|YP_004410574.1| - 0.00077 19.3 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|330835846|ref|YP_004410574.1| - 0.032 13.2 0.6 3 6.7 0.0 2.4 1 1 1 2 2 2 0 L-fucokinase DUF4954 PF16314.5 gi|330835846|ref|YP_004410574.1| - 1 7.4 4.4 0.85 7.7 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) Ribosomal_S3Ae PF01015.18 gi|330835847|ref|YP_004410575.1| - 1.7e-63 213.9 1.2 2e-63 213.6 1.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family SpoU_methylase PF00588.19 gi|330835848|ref|YP_004410576.1| - 2.2e-31 108.9 0.0 2.8e-31 108.6 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|330835848|ref|YP_004410576.1| - 7.8e-07 29.1 0.0 8.4e-05 22.5 0.0 2.4 2 1 0 2 2 2 1 SAM-dependent RNA methyltransferase MTS PF05175.14 gi|330835849|ref|YP_004410577.1| - 6.1e-13 48.7 0.0 8.4e-13 48.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|330835849|ref|YP_004410577.1| - 5e-11 42.5 0.2 7.3e-11 42.0 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|330835849|ref|YP_004410577.1| - 1.2e-06 28.4 0.0 1.9e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|330835849|ref|YP_004410577.1| - 2.6e-06 27.3 0.0 3.9e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|330835849|ref|YP_004410577.1| - 4.3e-05 24.1 0.0 6.6e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|330835849|ref|YP_004410577.1| - 0.00011 22.1 0.0 0.00012 21.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|330835849|ref|YP_004410577.1| - 0.0009 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_16 PF10294.9 gi|330835849|ref|YP_004410577.1| - 0.00098 18.9 0.4 0.0015 18.3 0.1 1.5 2 0 0 2 2 2 1 Lysine methyltransferase N6_N4_Mtase PF01555.18 gi|330835849|ref|YP_004410577.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|330835849|ref|YP_004410577.1| - 0.0014 19.3 0.0 0.0022 18.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|330835849|ref|YP_004410577.1| - 0.002 18.0 0.0 0.0027 17.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|330835849|ref|YP_004410577.1| - 0.0082 15.4 0.0 0.039 13.2 0.0 1.8 1 1 0 1 1 1 1 N-6 DNA Methylase CMAS PF02353.20 gi|330835849|ref|YP_004410577.1| - 0.01 15.1 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|330835849|ref|YP_004410577.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MethyltransfD12 PF02086.15 gi|330835849|ref|YP_004410577.1| - 0.027 14.2 0.0 4.3 6.9 0.0 2.5 1 1 1 2 2 2 0 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_15 PF09445.10 gi|330835849|ref|YP_004410577.1| - 0.039 13.5 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase MetW PF07021.12 gi|330835849|ref|YP_004410577.1| - 0.057 13.0 0.0 0.08 12.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW DUF3419 PF11899.8 gi|330835849|ref|YP_004410577.1| - 0.079 12.1 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Carm_PH PF17888.1 gi|330835849|ref|YP_004410577.1| - 0.1 13.0 0.2 0.19 12.1 0.2 1.4 1 0 0 1 1 1 0 Carmil pleckstrin homology domain GidB PF02527.15 gi|330835849|ref|YP_004410577.1| - 0.18 11.1 0.3 0.34 10.2 0.1 1.5 2 0 0 2 2 2 0 rRNA small subunit methyltransferase G RrnaAD PF00398.20 gi|330835850|ref|YP_004410578.1| - 4.5e-19 68.6 0.1 2.5e-18 66.1 0.1 1.9 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.6 gi|330835850|ref|YP_004410578.1| - 0.21 11.6 0.0 0.37 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DUF655 PF04919.12 gi|330835851|ref|YP_004410579.1| - 1.9e-55 187.6 3.3 2.3e-55 187.3 3.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|330835851|ref|YP_004410579.1| - 0.0039 17.4 0.1 0.029 14.6 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|330835851|ref|YP_004410579.1| - 3.1 8.5 7.6 1.4 9.6 0.2 2.9 3 0 0 3 3 3 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|330835852|ref|YP_004410580.1| - 4.8e-11 43.0 2.3 5.3e-11 42.9 2.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 RYDR_ITPR PF01365.21 gi|330835852|ref|YP_004410580.1| - 0.019 14.4 0.1 0.021 14.3 0.1 1.0 1 0 0 1 1 1 0 RIH domain EF-G-binding_N PF07299.11 gi|330835852|ref|YP_004410580.1| - 0.025 15.1 1.4 0.46 11.0 0.3 2.1 1 1 1 2 2 2 0 Elongation factor G-binding protein, N-terminal Skp1 PF01466.19 gi|330835852|ref|YP_004410580.1| - 0.038 14.1 0.5 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 Skp1 family, dimerisation domain DUF1397 PF07165.11 gi|330835852|ref|YP_004410580.1| - 0.044 13.2 0.1 0.052 13.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1397) CID_GANP PF16766.5 gi|330835852|ref|YP_004410580.1| - 0.07 13.3 0.6 0.13 12.5 0.4 1.6 1 1 0 1 1 1 0 Binding region of GANP to ENY2 DNA_primase_lrg PF04104.14 gi|330835852|ref|YP_004410580.1| - 0.08 12.3 0.4 5.5 6.3 0.0 2.0 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit Ribosomal_L21e PF01157.18 gi|330835853|ref|YP_004410581.1| - 1.6e-31 108.1 1.9 1.8e-31 108.0 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e DUF104 PF01954.16 gi|330835853|ref|YP_004410581.1| - 0.052 14.0 1.4 1.3 9.5 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF104 LSM PF01423.22 gi|330835854|ref|YP_004410582.1| - 2.4e-23 81.6 1.2 2.7e-23 81.4 1.2 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|330835854|ref|YP_004410582.1| - 0.0019 18.3 0.1 0.0024 18.0 0.1 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|330835854|ref|YP_004410582.1| - 0.0084 16.2 0.0 0.012 15.7 0.0 1.4 1 1 0 1 1 1 1 RimP C-terminal SH3 domain YfmQ PF10787.9 gi|330835854|ref|YP_004410582.1| - 0.051 13.4 0.0 0.059 13.1 0.0 1.3 1 1 0 1 1 1 0 Uncharacterised protein from bacillus cereus group Pirin_C PF05726.13 gi|330835854|ref|YP_004410582.1| - 0.1 13.0 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Ribosomal_L37e PF01907.19 gi|330835855|ref|YP_004410583.1| - 1.6e-22 79.4 11.3 1.8e-22 79.2 11.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e Ephrin_rec_like PF07699.13 gi|330835855|ref|YP_004410583.1| - 0.001 18.8 1.3 0.0013 18.5 1.3 1.3 1 0 0 1 1 1 1 Putative ephrin-receptor like OrfB_Zn_ribbon PF07282.11 gi|330835855|ref|YP_004410583.1| - 0.036 14.0 2.1 0.043 13.7 2.1 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|330835855|ref|YP_004410583.1| - 0.041 13.9 0.4 0.044 13.8 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|330835855|ref|YP_004410583.1| - 0.083 12.8 4.0 0.56 10.2 0.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|330835855|ref|YP_004410583.1| - 0.086 12.5 5.6 0.12 12.1 0.7 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit NRDD PF13597.6 gi|330835855|ref|YP_004410583.1| - 0.091 11.5 2.8 0.09 11.5 2.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|330835855|ref|YP_004410583.1| - 0.2 11.4 4.0 5.2 6.9 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain Spermine_synth PF01564.17 gi|330835856|ref|YP_004410584.1| - 1.5e-46 158.2 0.0 2e-46 157.8 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|330835856|ref|YP_004410584.1| - 2.7e-07 30.3 0.2 5.6e-07 29.4 0.2 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_25 PF13649.6 gi|330835856|ref|YP_004410584.1| - 9.2e-07 29.5 0.0 1.6e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|330835856|ref|YP_004410584.1| - 4.3e-05 24.2 0.0 7.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|330835856|ref|YP_004410584.1| - 0.005 16.4 0.0 0.016 14.8 0.0 1.7 2 0 0 2 2 2 1 MraW methylase family Methyltransf_11 PF08241.12 gi|330835856|ref|YP_004410584.1| - 0.0074 16.9 0.0 0.016 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|330835856|ref|YP_004410584.1| - 0.0096 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_2 PF00891.18 gi|330835856|ref|YP_004410584.1| - 0.019 14.3 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain DUF43 PF01861.16 gi|330835856|ref|YP_004410584.1| - 0.025 13.8 0.0 0.035 13.3 0.0 1.3 1 0 0 1 1 1 0 Branched-chain polyamine synthase A C-terminal domain Methyltransf_31 PF13847.6 gi|330835856|ref|YP_004410584.1| - 0.025 14.4 0.0 0.034 13.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|330835856|ref|YP_004410584.1| - 0.057 13.0 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|330835856|ref|YP_004410584.1| - 0.063 13.1 0.0 0.094 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain ArsB PF02040.15 gi|330835858|ref|YP_004410586.1| - 2.1e-115 386.5 38.0 2.5e-115 386.2 38.0 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein CitMHS PF03600.16 gi|330835858|ref|YP_004410586.1| - 1.7e-19 70.1 39.7 1.7e-19 70.1 39.7 1.9 1 1 1 2 2 2 1 Citrate transporter KH_7 PF17214.3 gi|330835859|ref|YP_004410587.1| - 8.5e-23 80.1 11.7 1.2e-21 76.4 1.0 3.0 3 0 0 3 3 3 2 KH domain Beta-Casp PF10996.8 gi|330835859|ref|YP_004410587.1| - 7e-22 77.8 0.0 1.5e-21 76.8 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|330835859|ref|YP_004410587.1| - 3.8e-13 49.1 0.0 1.2e-12 47.6 0.0 2.0 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B_6 PF16661.5 gi|330835859|ref|YP_004410587.1| - 4.4e-13 49.1 0.0 8.8e-13 48.1 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|330835859|ref|YP_004410587.1| - 8.4e-12 45.5 0.0 5.8e-09 36.2 0.0 2.5 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|330835859|ref|YP_004410587.1| - 1.5e-10 41.0 0.1 2.9e-10 40.0 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|330835859|ref|YP_004410587.1| - 0.00034 20.4 7.5 0.011 15.6 0.3 2.9 1 1 1 2 2 2 2 KH domain Lactamase_B_3 PF13483.6 gi|330835859|ref|YP_004410587.1| - 0.0026 17.7 0.0 0.0076 16.2 0.0 1.7 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Imm64 PF15600.6 gi|330835859|ref|YP_004410587.1| - 0.038 13.7 0.6 0.085 12.5 0.6 1.5 1 0 0 1 1 1 0 Immunity protein 64 Fe-ADH_2 PF13685.6 gi|330835860|ref|YP_004410588.1| - 3.3e-68 230.1 0.0 4.2e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|330835860|ref|YP_004410588.1| - 1.4e-27 96.5 0.2 2.2e-26 92.5 0.2 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|330835860|ref|YP_004410588.1| - 6.4e-10 38.6 0.1 1.3e-08 34.3 0.1 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase FKBP26_C PF18046.1 gi|330835861|ref|YP_004410589.1| - 3.3e-10 39.9 1.7 7e-10 38.9 1.7 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal FKBP_C PF00254.28 gi|330835861|ref|YP_004410589.1| - 7e-10 39.1 0.0 1.9e-09 37.7 0.0 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CBM9_2 PF16011.5 gi|330835861|ref|YP_004410589.1| - 0.014 15.1 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate-binding family 9 Mei5_like PF17021.5 gi|330835861|ref|YP_004410589.1| - 0.16 12.0 1.6 0.16 12.0 0.2 1.7 2 0 0 2 2 2 0 Putative double-strand recombination repair-like AdoHcyase PF05221.17 gi|330835862|ref|YP_004410590.1| - 1.4e-71 241.1 0.0 2.4e-40 138.5 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|330835862|ref|YP_004410590.1| - 5.7e-55 185.8 0.8 8.8e-55 185.2 0.8 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|330835862|ref|YP_004410590.1| - 7.9e-08 31.9 0.5 1.4e-07 31.0 0.5 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|330835862|ref|YP_004410590.1| - 7.6e-07 28.9 0.1 1.7e-06 27.7 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|330835862|ref|YP_004410590.1| - 7.5e-05 23.0 0.1 0.00021 21.5 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|330835862|ref|YP_004410590.1| - 0.0037 16.6 1.2 0.015 14.6 1.2 1.9 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox PF00070.27 gi|330835862|ref|YP_004410590.1| - 0.037 14.6 0.7 0.12 12.9 0.7 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|330835862|ref|YP_004410590.1| - 0.1 13.2 0.7 0.24 12.0 0.2 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.27 gi|330835863|ref|YP_004410591.1| - 5.5e-43 146.8 0.6 3.7e-20 72.8 0.2 2.6 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|330835863|ref|YP_004410591.1| - 4.6e-14 52.9 6.5 0.0017 18.2 0.8 4.4 3 1 1 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|330835863|ref|YP_004410591.1| - 7.8e-14 51.6 8.5 2.4e-07 30.4 3.4 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|330835863|ref|YP_004410591.1| - 1.4e-13 50.4 1.2 3.3e-13 49.2 1.2 1.7 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.27 gi|330835863|ref|YP_004410591.1| - 1.3e-06 28.0 5.0 1.3e-06 28.0 5.0 2.8 3 0 0 3 3 2 1 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|330835863|ref|YP_004410591.1| - 1.7e-06 28.0 0.3 0.029 14.3 0.0 3.3 3 0 0 3 3 3 2 RsgA GTPase Fer4_21 PF14697.6 gi|330835863|ref|YP_004410591.1| - 8.8e-06 25.8 9.0 1.5e-05 25.0 9.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain MMR_HSR1 PF01926.23 gi|330835863|ref|YP_004410591.1| - 1.8e-05 24.8 0.1 0.11 12.6 0.0 3.0 2 1 0 2 2 2 2 50S ribosome-binding GTPase Fer4_10 PF13237.6 gi|330835863|ref|YP_004410591.1| - 5.9e-05 23.1 10.2 0.0018 18.3 1.7 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Rad17 PF03215.15 gi|330835863|ref|YP_004410591.1| - 7e-05 22.8 0.0 0.063 13.2 0.0 2.5 2 0 0 2 2 2 1 Rad17 P-loop domain AAA PF00004.29 gi|330835863|ref|YP_004410591.1| - 7.2e-05 23.2 0.3 0.35 11.3 0.0 3.1 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|330835863|ref|YP_004410591.1| - 9e-05 22.3 2.1 0.21 11.3 0.1 2.8 3 0 0 3 3 3 2 AAA domain Fer4_6 PF12837.7 gi|330835863|ref|YP_004410591.1| - 0.00016 21.6 13.2 0.0022 18.0 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain AAA_22 PF13401.6 gi|330835863|ref|YP_004410591.1| - 0.00018 21.8 3.1 0.078 13.3 0.0 3.3 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|330835863|ref|YP_004410591.1| - 0.00022 21.1 8.3 0.28 10.8 3.2 3.2 3 2 1 4 4 3 2 AAA ATPase domain AAA_16 PF13191.6 gi|330835863|ref|YP_004410591.1| - 0.00027 21.4 0.1 0.041 14.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.22 gi|330835863|ref|YP_004410591.1| - 0.0003 20.1 0.7 0.35 10.0 0.1 2.5 2 0 0 2 2 2 2 NB-ARC domain Fer4_7 PF12838.7 gi|330835863|ref|YP_004410591.1| - 0.00039 20.9 17.3 0.0033 18.0 6.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_29 PF13555.6 gi|330835863|ref|YP_004410591.1| - 0.00052 19.7 1.9 0.36 10.6 0.3 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain TsaE PF02367.17 gi|330835863|ref|YP_004410591.1| - 0.00096 19.1 0.2 1 9.3 0.0 2.5 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|330835863|ref|YP_004410591.1| - 0.0012 19.4 4.7 0.12 12.9 0.9 3.2 2 2 0 2 2 2 1 AAA domain PRK PF00485.18 gi|330835863|ref|YP_004410591.1| - 0.0012 18.7 0.7 0.81 9.4 0.0 3.1 3 0 0 3 3 3 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.22 gi|330835863|ref|YP_004410591.1| - 0.0014 19.0 0.4 1.9 8.9 0.0 3.0 3 0 0 3 3 2 1 RNA helicase AAA_23 PF13476.6 gi|330835863|ref|YP_004410591.1| - 0.0014 19.2 15.6 0.21 12.1 1.3 2.8 1 1 1 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|330835863|ref|YP_004410591.1| - 0.0015 18.7 0.1 2.6 8.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain MobB PF03205.14 gi|330835863|ref|YP_004410591.1| - 0.0017 18.2 0.6 1.3 8.9 0.0 2.4 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.6 gi|330835863|ref|YP_004410591.1| - 0.0018 18.5 0.0 1.8 8.8 0.0 2.6 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.6 gi|330835863|ref|YP_004410591.1| - 0.0019 18.0 1.7 0.54 9.9 0.1 2.9 4 0 0 4 4 2 1 AAA domain Fer4_9 PF13187.6 gi|330835863|ref|YP_004410591.1| - 0.0019 18.3 7.4 0.004 17.3 7.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|330835863|ref|YP_004410591.1| - 0.0021 18.1 2.1 0.0021 18.1 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NACHT PF05729.12 gi|330835863|ref|YP_004410591.1| - 0.0039 17.1 2.5 1.1 9.1 0.0 3.1 4 0 0 4 4 2 1 NACHT domain RuvB_N PF05496.12 gi|330835863|ref|YP_004410591.1| - 0.011 15.5 0.0 3.5 7.3 0.0 2.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATP-synt_ab PF00006.25 gi|330835863|ref|YP_004410591.1| - 0.015 15.0 1.6 0.11 12.2 0.2 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 gi|330835863|ref|YP_004410591.1| - 0.015 14.0 0.3 0.44 9.1 0.1 2.8 3 0 0 3 3 3 0 AAA domain Fer4_16 PF13484.6 gi|330835863|ref|YP_004410591.1| - 0.027 15.4 0.6 0.027 15.4 0.6 2.8 3 0 0 3 3 2 0 4Fe-4S double cluster binding domain Zeta_toxin PF06414.12 gi|330835863|ref|YP_004410591.1| - 0.027 13.7 0.2 13 5.0 0.1 3.4 3 1 0 3 3 3 0 Zeta toxin Spore_IV_A PF09547.10 gi|330835863|ref|YP_004410591.1| - 0.046 12.7 1.8 4 6.3 0.1 2.2 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) AAA_14 PF13173.6 gi|330835863|ref|YP_004410591.1| - 0.046 13.7 7.4 2.9 7.9 0.4 3.7 4 0 0 4 4 4 0 AAA domain DUF87 PF01935.17 gi|330835863|ref|YP_004410591.1| - 0.067 13.3 2.4 2.7 8.0 0.1 3.4 3 1 1 4 4 3 0 Helicase HerA, central domain Roc PF08477.13 gi|330835863|ref|YP_004410591.1| - 0.089 13.0 0.5 13 6.0 0.1 2.6 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_7 PF12775.7 gi|330835863|ref|YP_004410591.1| - 0.1 12.1 0.2 14 5.1 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region sCache_3_2 PF17203.4 gi|330835863|ref|YP_004410591.1| - 0.1 12.7 0.5 0.57 10.3 0.1 2.3 2 0 0 2 2 2 0 Single cache domain 3 PduV-EutP PF10662.9 gi|330835863|ref|YP_004410591.1| - 0.1 12.3 1.6 4 7.2 0.1 3.4 4 0 0 4 4 3 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|330835863|ref|YP_004410591.1| - 0.11 12.3 3.6 4.1 7.3 0.2 3.0 2 0 0 2 2 2 0 NTPase AAA_28 PF13521.6 gi|330835863|ref|YP_004410591.1| - 0.12 12.6 0.4 22 5.3 0.1 2.8 3 1 0 3 3 2 0 AAA domain KAP_NTPase PF07693.14 gi|330835863|ref|YP_004410591.1| - 0.14 11.4 0.6 12 5.0 0.4 2.5 2 1 0 2 2 2 0 KAP family P-loop domain TrwB_AAD_bind PF10412.9 gi|330835863|ref|YP_004410591.1| - 0.15 11.0 0.7 8.8 5.1 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain MeaB PF03308.16 gi|330835863|ref|YP_004410591.1| - 0.19 10.6 0.9 8.6 5.3 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|330835863|ref|YP_004410591.1| - 0.35 10.4 0.9 16 5.0 0.0 2.7 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.22 gi|330835863|ref|YP_004410591.1| - 0.66 9.6 5.7 5.3 6.6 0.1 3.0 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain Fer4_4 PF12800.7 gi|330835863|ref|YP_004410591.1| - 1.7 9.3 12.2 1.2 9.8 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|330835863|ref|YP_004410591.1| - 2.2 9.4 13.0 1.2 10.3 3.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|330835863|ref|YP_004410591.1| - 3 8.4 8.8 0.63 10.6 2.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain AAA_19 PF13245.6 gi|330835863|ref|YP_004410591.1| - 3.2 8.1 7.1 18 5.6 0.2 2.9 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|330835863|ref|YP_004410591.1| - 3.4 8.1 6.7 69 3.9 0.1 4.4 4 2 1 5 5 4 0 AAA domain FBPase_3 PF01950.16 gi|330835864|ref|YP_004410592.1| - 2.5e-176 586.2 0.0 2.8e-176 586.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Ribosomal_S17e PF00833.18 gi|330835865|ref|YP_004410593.1| - 9.6e-15 54.6 3.2 9.8e-15 54.6 3.2 1.1 1 0 0 1 1 1 1 Ribosomal S17 DUF502 PF04367.13 gi|330835865|ref|YP_004410593.1| - 0.085 12.7 0.4 0.099 12.5 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF502) Urm1 PF09138.11 gi|330835866|ref|YP_004410594.1| - 3.2e-06 27.4 0.6 4.1e-06 27.1 0.6 1.2 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.20 gi|330835866|ref|YP_004410594.1| - 0.0041 17.7 0.2 0.005 17.5 0.2 1.3 1 1 0 1 1 1 1 ThiS family Hfq PF17209.3 gi|330835866|ref|YP_004410594.1| - 0.19 11.4 0.8 0.35 10.5 0.8 1.6 1 1 0 1 1 1 0 Hfq protein DUF87 PF01935.17 gi|330835868|ref|YP_004410596.1| - 1.7e-23 83.9 1.0 3.2e-23 83.0 1.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|330835868|ref|YP_004410596.1| - 4e-09 35.6 0.8 0.00013 20.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_18 PF13238.6 gi|330835868|ref|YP_004410596.1| - 0.00069 20.2 0.2 0.0015 19.1 0.2 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|330835868|ref|YP_004410596.1| - 0.00073 19.6 0.0 0.0029 17.6 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain TrwB_AAD_bind PF10412.9 gi|330835868|ref|YP_004410596.1| - 0.0012 17.8 0.1 0.0051 15.8 0.2 1.8 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|330835868|ref|YP_004410596.1| - 0.0013 19.1 0.1 0.47 10.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|330835868|ref|YP_004410596.1| - 0.0015 17.6 0.3 0.0053 15.8 0.1 1.8 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB CLP1_P PF16575.5 gi|330835868|ref|YP_004410596.1| - 0.0034 17.2 0.0 0.0071 16.2 0.0 1.5 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ABC_tran PF00005.27 gi|330835868|ref|YP_004410596.1| - 0.012 16.1 0.1 0.029 14.9 0.1 1.6 1 0 0 1 1 1 0 ABC transporter SRP54 PF00448.22 gi|330835868|ref|YP_004410596.1| - 0.013 15.1 0.0 0.034 13.8 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zot PF05707.12 gi|330835868|ref|YP_004410596.1| - 0.015 15.0 0.0 0.05 13.3 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) ParA PF10609.9 gi|330835868|ref|YP_004410596.1| - 0.027 13.9 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase APS_kinase PF01583.20 gi|330835868|ref|YP_004410596.1| - 0.029 14.3 0.0 0.058 13.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA PF00004.29 gi|330835868|ref|YP_004410596.1| - 0.029 14.8 0.2 2 8.8 0.0 2.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|330835868|ref|YP_004410596.1| - 0.039 13.0 0.2 0.07 12.2 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein T4SS-DNA_transf PF02534.14 gi|330835868|ref|YP_004410596.1| - 0.095 11.5 0.0 0.19 10.5 0.0 1.4 2 0 0 2 2 2 0 Type IV secretory system Conjugative DNA transfer AAA_29 PF13555.6 gi|330835868|ref|YP_004410596.1| - 0.17 11.6 0.1 0.35 10.6 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cpn60_TCP1 PF00118.24 gi|330835869|ref|YP_004410597.1| - 1.1e-169 565.2 15.5 1.3e-169 565.0 15.5 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family tRNA_int_endo PF01974.17 gi|330835871|ref|YP_004410599.1| - 6.9e-05 22.8 0.3 0.00034 20.6 0.3 1.9 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA-synt_His PF13393.6 gi|330835872|ref|YP_004410600.1| - 8.3e-62 209.2 0.0 1.5e-61 208.4 0.0 1.4 2 0 0 2 2 2 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|330835872|ref|YP_004410600.1| - 1.1e-14 54.8 0.1 2.5e-13 50.4 0.1 2.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|330835872|ref|YP_004410600.1| - 2.5e-13 50.0 2.1 5.2e-13 49.0 0.6 2.3 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|330835872|ref|YP_004410600.1| - 2.1e-09 37.2 0.1 6.1e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|330835872|ref|YP_004410600.1| - 0.0005 19.6 0.0 0.00099 18.6 0.0 1.5 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|330835872|ref|YP_004410600.1| - 0.38 9.8 1.9 15 4.6 0.8 2.4 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) Proteasome PF00227.26 gi|330835873|ref|YP_004410601.1| - 1.5e-45 155.1 0.0 1.7e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit RNA_pol_RpbG PF16992.5 gi|330835874|ref|YP_004410602.1| - 9.2e-45 151.5 4.1 1.3e-44 151.0 4.1 1.2 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|330835874|ref|YP_004410602.1| - 0.00024 21.3 0.6 0.0081 16.4 0.6 2.1 1 1 0 1 1 1 1 RNA polymerase Rpb8 Lsm_C PF14894.6 gi|330835875|ref|YP_004410603.1| - 2e-29 101.2 0.2 2.7e-29 100.7 0.2 1.2 1 0 0 1 1 1 1 Lsm C-terminal TGT PF01702.18 gi|330835876|ref|YP_004410604.1| - 3.6e-62 210.5 0.0 5.2e-62 210.0 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF5591 PF17884.1 gi|330835876|ref|YP_004410604.1| - 0.034 14.0 0.0 0.096 12.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) PAC2 PF09754.9 gi|330835877|ref|YP_004410605.1| - 8.6e-23 81.5 0.0 9.8e-23 81.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PRKG1_interact PF15898.5 gi|330835877|ref|YP_004410605.1| - 0.045 14.7 1.0 0.086 13.8 1.0 1.4 1 0 0 1 1 1 0 cGMP-dependent protein kinase interacting domain TGT_C2 PF14810.6 gi|330835878|ref|YP_004410606.1| - 6.2e-22 77.5 0.0 1.2e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|330835878|ref|YP_004410606.1| - 4e-15 55.5 2.9 6.1e-15 55.0 2.9 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|330835878|ref|YP_004410606.1| - 0.00023 21.4 0.4 0.0004 20.6 0.4 1.4 1 0 0 1 1 1 1 UPF0113 PUA domain AAA PF00004.29 gi|330835879|ref|YP_004410607.1| - 3.8e-43 147.1 0.0 7.9e-43 146.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|330835879|ref|YP_004410607.1| - 4.2e-16 58.5 0.0 1e-15 57.2 0.0 1.7 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|330835879|ref|YP_004410607.1| - 7.1e-09 35.5 1.4 1.8e-08 34.2 1.4 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|330835879|ref|YP_004410607.1| - 1.1e-07 32.1 0.0 4.4e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|330835879|ref|YP_004410607.1| - 1.1e-06 29.1 0.2 0.00014 22.3 0.0 2.8 2 1 1 3 3 2 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|330835879|ref|YP_004410607.1| - 3.3e-06 26.6 1.5 9.9e-06 25.1 1.5 1.7 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|330835879|ref|YP_004410607.1| - 1.2e-05 25.1 0.1 5.4e-05 23.0 0.0 2.0 3 0 0 3 3 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|330835879|ref|YP_004410607.1| - 3.5e-05 23.8 0.6 0.00043 20.3 0.6 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|330835879|ref|YP_004410607.1| - 0.00019 21.7 0.2 0.0074 16.6 0.1 2.5 1 1 1 2 2 2 1 AAA domain DUF815 PF05673.13 gi|330835879|ref|YP_004410607.1| - 0.0011 18.2 0.0 0.0021 17.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|330835879|ref|YP_004410607.1| - 0.0012 18.2 0.0 0.0026 17.2 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|330835879|ref|YP_004410607.1| - 0.0014 17.9 0.0 0.003 16.8 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_28 PF13521.6 gi|330835879|ref|YP_004410607.1| - 0.0015 18.8 0.0 0.0034 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|330835879|ref|YP_004410607.1| - 0.0018 18.0 0.0 0.0046 16.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|330835879|ref|YP_004410607.1| - 0.0024 18.1 0.0 0.0051 17.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|330835879|ref|YP_004410607.1| - 0.0026 17.8 0.0 0.0071 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|330835879|ref|YP_004410607.1| - 0.0042 16.8 0.0 0.0083 15.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|330835879|ref|YP_004410607.1| - 0.0058 17.0 0.0 0.013 15.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase ATPase PF06745.13 gi|330835879|ref|YP_004410607.1| - 0.0063 15.9 0.4 0.018 14.4 0.1 2.0 2 1 0 2 2 2 1 KaiC Sigma54_activat PF00158.26 gi|330835879|ref|YP_004410607.1| - 0.0067 16.1 0.0 0.038 13.7 0.0 2.2 3 0 0 3 3 2 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|330835879|ref|YP_004410607.1| - 0.0091 16.6 0.0 0.021 15.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|330835879|ref|YP_004410607.1| - 0.015 15.2 0.1 0.052 13.5 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.6 gi|330835879|ref|YP_004410607.1| - 0.018 14.6 0.7 0.082 12.5 0.1 2.2 1 1 1 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|330835879|ref|YP_004410607.1| - 0.024 14.2 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|330835879|ref|YP_004410607.1| - 0.03 13.6 0.6 0.1 11.9 0.0 2.2 3 0 0 3 3 2 0 Zeta toxin ATPase_2 PF01637.18 gi|330835879|ref|YP_004410607.1| - 0.053 13.4 0.0 0.67 9.8 0.0 2.1 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea Parvo_NS1 PF01057.17 gi|330835879|ref|YP_004410607.1| - 0.053 12.6 0.0 0.092 11.8 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ThylakoidFormat PF11264.8 gi|330835879|ref|YP_004410607.1| - 0.071 12.8 0.2 0.15 11.7 0.2 1.5 1 0 0 1 1 1 0 Thylakoid formation protein TsaE PF02367.17 gi|330835879|ref|YP_004410607.1| - 0.075 13.0 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE PhoH PF02562.16 gi|330835879|ref|YP_004410607.1| - 0.081 12.4 0.1 0.21 11.0 0.1 1.6 1 0 0 1 1 1 0 PhoH-like protein bZIP_1 PF00170.21 gi|330835879|ref|YP_004410607.1| - 0.085 13.0 0.4 0.085 13.0 0.4 2.0 3 0 0 3 3 1 0 bZIP transcription factor cobW PF02492.19 gi|330835879|ref|YP_004410607.1| - 0.11 12.1 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DUF4515 PF14988.6 gi|330835879|ref|YP_004410607.1| - 0.12 12.2 1.3 0.17 11.7 0.2 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4515) AAA_30 PF13604.6 gi|330835879|ref|YP_004410607.1| - 0.13 11.9 1.7 0.18 11.5 0.3 2.0 2 1 0 2 2 1 0 AAA domain AAA_32 PF13654.6 gi|330835879|ref|YP_004410607.1| - 0.16 10.8 1.0 1.5 7.5 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.6 gi|330835879|ref|YP_004410607.1| - 0.21 11.9 0.4 0.74 10.1 0.3 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|330835879|ref|YP_004410607.1| - 0.27 11.1 2.3 3.3 7.6 0.0 2.8 2 2 0 2 2 2 0 NTPase HTH_3 PF01381.22 gi|330835880|ref|YP_004410608.1| - 7.7e-07 29.1 0.7 1.4e-06 28.3 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|330835880|ref|YP_004410608.1| - 0.00017 21.4 0.4 0.00028 20.7 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain zf-UDP PF14569.6 gi|330835880|ref|YP_004410608.1| - 0.00043 20.3 0.9 0.00072 19.6 0.9 1.4 1 0 0 1 1 1 1 Zinc-binding RING-finger HTH_31 PF13560.6 gi|330835880|ref|YP_004410608.1| - 0.0017 18.7 0.0 0.0026 18.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|330835880|ref|YP_004410608.1| - 0.055 13.6 1.6 0.14 12.3 0.1 2.0 1 1 1 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_19 PF12844.7 gi|330835880|ref|YP_004410608.1| - 0.064 13.3 1.1 0.19 11.8 1.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_37 PF13744.6 gi|330835880|ref|YP_004410608.1| - 0.067 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain LIM PF00412.22 gi|330835880|ref|YP_004410608.1| - 0.1 12.8 0.7 0.2 11.9 0.7 1.4 1 0 0 1 1 1 0 LIM domain DUF4428 PF14471.6 gi|330835880|ref|YP_004410608.1| - 0.11 12.4 2.1 0.14 12.1 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DZR PF12773.7 gi|330835880|ref|YP_004410608.1| - 0.12 12.4 0.2 0.18 11.8 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon GTP-bdg_M PF16360.5 gi|330835881|ref|YP_004410609.1| - 1e-18 67.7 1.0 1.6e-18 67.0 1.0 1.3 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region MMR_HSR1 PF01926.23 gi|330835881|ref|YP_004410609.1| - 2e-17 63.3 0.2 4.8e-17 62.1 0.2 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_N PF13167.6 gi|330835881|ref|YP_004410609.1| - 2.1e-09 38.0 0.1 4.5e-09 36.9 0.1 1.6 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|330835881|ref|YP_004410609.1| - 1.1e-06 28.3 0.5 3.1e-06 26.8 0.5 1.8 1 1 0 1 1 1 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|330835881|ref|YP_004410609.1| - 3.9e-05 23.2 0.2 7e-05 22.3 0.2 1.4 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit GTP_EFTU PF00009.27 gi|330835881|ref|YP_004410609.1| - 4.6e-05 23.1 0.1 0.00088 18.9 0.0 2.4 1 1 1 2 2 2 1 Elongation factor Tu GTP binding domain Ras PF00071.22 gi|330835881|ref|YP_004410609.1| - 8e-05 22.3 0.0 0.00029 20.5 0.0 1.9 1 1 0 1 1 1 1 Ras family MMR_HSR1_Xtn PF16897.5 gi|330835881|ref|YP_004410609.1| - 0.00031 20.7 0.0 0.00085 19.3 0.0 1.8 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Arf PF00025.21 gi|330835881|ref|YP_004410609.1| - 0.0021 17.5 0.1 0.0063 16.0 0.1 1.7 1 1 0 1 1 1 1 ADP-ribosylation factor family ABC_tran PF00005.27 gi|330835881|ref|YP_004410609.1| - 0.031 14.8 0.1 0.089 13.3 0.0 1.7 1 1 0 1 1 1 0 ABC transporter Dynamin_N PF00350.23 gi|330835881|ref|YP_004410609.1| - 0.054 13.6 0.3 5.1 7.1 0.1 2.5 1 1 1 2 2 2 0 Dynamin family DUF3939 PF13075.6 gi|330835881|ref|YP_004410609.1| - 0.076 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) AAA_23 PF13476.6 gi|330835881|ref|YP_004410609.1| - 0.66 10.4 7.5 0.81 10.1 0.5 2.3 1 1 1 2 2 2 0 AAA domain Trm56 PF01994.16 gi|330835882|ref|YP_004410610.1| - 1.5e-35 121.7 0.0 1.7e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.17 gi|330835883|ref|YP_004410611.1| - 3.1e-26 91.3 5.7 3.1e-26 91.3 5.7 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_9 PF08221.11 gi|330835883|ref|YP_004410611.1| - 2.2e-06 27.7 0.0 7.2e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|330835883|ref|YP_004410611.1| - 0.0049 16.9 0.1 0.0099 15.9 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|330835883|ref|YP_004410611.1| - 0.02 14.9 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|330835883|ref|YP_004410611.1| - 0.027 14.0 1.7 0.069 12.7 0.9 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding HypA PF01155.19 gi|330835883|ref|YP_004410611.1| - 0.03 14.3 0.0 0.055 13.5 0.0 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1595 PF12760.7 gi|330835883|ref|YP_004410611.1| - 0.034 14.1 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-Mss51 PF13824.6 gi|330835883|ref|YP_004410611.1| - 0.041 14.0 0.1 0.11 12.6 0.1 1.8 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rrf2 PF02082.20 gi|330835883|ref|YP_004410611.1| - 0.088 13.2 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TrmB PF01978.19 gi|330835883|ref|YP_004410611.1| - 0.088 12.7 1.1 0.11 12.4 0.1 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Peptidase_C98 PF15499.6 gi|330835883|ref|YP_004410611.1| - 0.13 11.8 1.2 0.27 10.7 1.2 1.6 1 1 0 1 1 1 0 Ubiquitin-specific peptidase-like, SUMO isopeptidase DNA_methylase PF00145.17 gi|330835884|ref|YP_004410612.1| - 1.6e-52 178.9 0.0 1.3e-38 133.3 0.0 2.0 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|330835884|ref|YP_004410612.1| - 0.0019 17.8 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF2122 PF09895.9 gi|330835885|ref|YP_004410613.1| - 2.3e-31 108.3 0.0 3e-31 108.0 0.0 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Rib_5-P_isom_A PF06026.14 gi|330835887|ref|YP_004410615.1| - 8.9e-40 136.1 0.0 1.1e-39 135.8 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|330835887|ref|YP_004410615.1| - 0.00094 19.2 0.1 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|330835887|ref|YP_004410615.1| - 0.0058 15.8 0.0 0.0087 15.2 0.0 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain Tmemb_9 PF05434.11 gi|330835889|ref|YP_004410617.1| - 0.1 12.5 0.1 0.11 12.4 0.1 1.0 1 0 0 1 1 1 0 TMEM9 Elf1 PF05129.13 gi|330835890|ref|YP_004410618.1| - 5.6e-17 61.6 0.1 8.1e-17 61.0 0.1 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|330835890|ref|YP_004410618.1| - 0.001 19.4 0.4 0.0018 18.6 0.4 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|330835890|ref|YP_004410618.1| - 0.0059 16.0 1.6 0.36 10.3 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zf-Mss51 PF13824.6 gi|330835890|ref|YP_004410618.1| - 0.007 16.4 0.6 1.6 8.9 0.0 2.3 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 RbpA PF13397.6 gi|330835890|ref|YP_004410618.1| - 0.015 15.9 0.1 0.041 14.5 0.1 1.7 1 1 1 2 2 2 0 RNA polymerase-binding protein zf-CSL PF05207.13 gi|330835890|ref|YP_004410618.1| - 0.062 13.0 0.2 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 CSL zinc finger Zn-ribbon_8 PF09723.10 gi|330835890|ref|YP_004410618.1| - 0.065 13.4 3.2 0.76 9.9 0.1 2.3 1 1 2 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|330835890|ref|YP_004410618.1| - 0.085 12.5 0.9 0.81 9.3 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|330835890|ref|YP_004410618.1| - 0.092 12.3 1.3 0.4 10.2 1.3 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding zf-FPG_IleRS PF06827.14 gi|330835890|ref|YP_004410618.1| - 0.093 12.6 1.1 0.18 11.7 0.1 2.0 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS OrfB_Zn_ribbon PF07282.11 gi|330835890|ref|YP_004410618.1| - 0.12 12.3 1.0 0.28 11.2 1.0 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.20 gi|330835890|ref|YP_004410618.1| - 0.2 11.7 2.9 0.26 11.3 0.1 2.4 3 0 0 3 3 2 0 Rubredoxin zf-ACC PF17848.1 gi|330835890|ref|YP_004410618.1| - 0.24 11.5 2.0 8.1 6.6 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-H2C2_2 PF13465.6 gi|330835890|ref|YP_004410618.1| - 0.26 11.8 4.0 3.6 8.2 0.3 2.3 2 0 0 2 2 2 0 Zinc-finger double domain Ribosomal_L32p PF01783.23 gi|330835890|ref|YP_004410618.1| - 0.54 10.6 3.7 3.9 7.8 0.3 2.2 1 1 1 2 2 2 0 Ribosomal L32p protein family PcrB PF01884.17 gi|330835891|ref|YP_004410619.1| - 2.1e-51 174.6 1.3 2.6e-51 174.3 1.3 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|330835891|ref|YP_004410619.1| - 1.4e-06 27.9 0.1 2.3e-06 27.3 0.1 1.3 1 0 0 1 1 1 1 Histidine biosynthesis protein G3P_antiterm PF04309.12 gi|330835891|ref|YP_004410619.1| - 0.00021 20.7 1.2 0.00055 19.4 0.4 1.9 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator NanE PF04131.14 gi|330835891|ref|YP_004410619.1| - 0.00057 19.1 0.4 0.00091 18.5 0.2 1.5 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|330835891|ref|YP_004410619.1| - 0.0012 18.1 0.8 0.002 17.4 0.8 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|330835891|ref|YP_004410619.1| - 0.006 15.9 1.2 0.014 14.7 0.2 1.9 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|330835891|ref|YP_004410619.1| - 0.01 14.7 0.4 0.017 14.0 0.4 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain IMPDH PF00478.25 gi|330835891|ref|YP_004410619.1| - 0.015 14.3 0.6 0.021 13.8 0.2 1.4 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Ribul_P_3_epim PF00834.19 gi|330835891|ref|YP_004410619.1| - 0.035 13.5 0.2 0.081 12.3 0.2 1.5 1 0 0 1 1 1 0 Ribulose-phosphate 3 epimerase family PucR PF07905.11 gi|330835891|ref|YP_004410619.1| - 0.08 13.2 0.0 5 7.4 0.0 2.2 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family IGPS PF00218.21 gi|330835891|ref|YP_004410619.1| - 0.081 12.1 0.0 0.87 8.7 0.0 2.1 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase NAD_binding_7 PF13241.6 gi|330835891|ref|YP_004410619.1| - 1.4 9.4 3.2 0.62 10.5 0.3 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Sec61_beta PF03911.16 gi|330835892|ref|YP_004410620.1| - 1.9e-14 53.4 0.6 2.1e-14 53.3 0.6 1.1 1 0 0 1 1 1 1 Sec61beta family Serpin PF00079.20 gi|330835892|ref|YP_004410620.1| - 0.2 10.9 0.0 0.2 10.9 0.0 1.0 1 0 0 1 1 1 0 Serpin (serine protease inhibitor) CBS PF00571.28 gi|330835893|ref|YP_004410621.1| - 3.2e-19 69.1 3.5 1.7e-09 38.0 0.3 2.4 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|330835893|ref|YP_004410621.1| - 2.6e-14 53.0 0.3 5.6e-14 51.9 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|330835893|ref|YP_004410621.1| - 1.4e-12 47.8 0.0 2.3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|330835893|ref|YP_004410621.1| - 3.6e-10 39.7 0.1 9.2e-10 38.4 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|330835893|ref|YP_004410621.1| - 6.7e-06 25.9 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|330835893|ref|YP_004410621.1| - 0.00017 21.5 0.1 0.00068 19.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|330835893|ref|YP_004410621.1| - 0.0007 19.1 0.1 0.0034 16.9 0.1 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|330835893|ref|YP_004410621.1| - 0.0009 18.8 0.0 0.0034 16.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MqsA_antitoxin PF15731.5 gi|330835893|ref|YP_004410621.1| - 0.0012 19.0 0.1 0.012 15.8 0.0 2.0 2 0 0 2 2 2 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA MarR_2 PF12802.7 gi|330835893|ref|YP_004410621.1| - 0.0018 18.1 0.1 0.022 14.6 0.0 2.5 3 0 0 3 3 3 1 MarR family HTH_26 PF13443.6 gi|330835893|ref|YP_004410621.1| - 0.0026 18.2 0.1 0.0096 16.3 0.1 2.0 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain MarR PF01047.22 gi|330835893|ref|YP_004410621.1| - 0.0062 16.4 0.0 0.052 13.5 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|330835893|ref|YP_004410621.1| - 0.013 15.3 0.2 0.073 12.9 0.0 2.2 2 1 1 3 3 3 0 Homeodomain-like domain PRC PF05239.16 gi|330835893|ref|YP_004410621.1| - 0.041 14.0 0.1 0.071 13.2 0.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain HTH_38 PF13936.6 gi|330835893|ref|YP_004410621.1| - 0.088 12.6 0.6 0.29 10.9 0.1 2.1 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|330835893|ref|YP_004410621.1| - 0.11 12.4 0.0 0.32 10.8 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Ribo_biogen_C PF04034.13 gi|330835894|ref|YP_004410622.1| - 6.4e-40 135.8 0.0 7.3e-40 135.6 0.0 1.0 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal AsnC_trans_reg PF01037.21 gi|330835895|ref|YP_004410623.1| - 3.7e-17 62.0 0.0 4.2e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|330835895|ref|YP_004410623.1| - 0.00092 19.1 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|330835895|ref|YP_004410623.1| - 0.025 14.6 0.0 0.034 14.2 0.0 1.2 1 0 0 1 1 1 0 NapD protein DUF1743 PF08489.11 gi|330835896|ref|YP_004410624.1| - 2.3e-30 105.0 0.0 4.7e-30 104.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) Zn_Tnp_IS1595 PF12760.7 gi|330835896|ref|YP_004410624.1| - 0.091 12.8 1.8 0.18 11.8 1.8 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HscB_4_cys PF18256.1 gi|330835896|ref|YP_004410624.1| - 6.3 6.7 5.9 11 5.9 5.9 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Metallosphaera_cuprina_Ar_4_uid66329/NC_015435.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Metallosphaera_cuprina_Ar_4_uid66329/NC_015435.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Metallosphaera_cuprina_Ar_4_uid66329/NC_015435.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Metallosphaera_cuprina_Ar_4_uid66329/NC_015435.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 11:03:28 2019 # [ok]