# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.6 gi|305662446|ref|YP_003858734.1| - 8.3e-26 89.5 1.6 2.2e-24 84.9 0.2 2.4 2 0 0 2 2 2 1 CDC6, C terminal AAA_16 PF13191.1 gi|305662446|ref|YP_003858734.1| - 2.5e-11 43.8 0.1 1.7e-09 37.9 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|305662446|ref|YP_003858734.1| - 1.4e-09 38.1 1.4 2e-09 37.6 0.0 1.9 3 0 0 3 3 3 1 AAA domain AAA PF00004.24 gi|305662446|ref|YP_003858734.1| - 5.2e-08 33.1 1.2 7.6e-08 32.6 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|305662446|ref|YP_003858734.1| - 1.4e-05 24.9 0.1 4.1e-05 23.3 0.1 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_32 PF13654.1 gi|305662446|ref|YP_003858734.1| - 0.00065 18.4 1.1 0.6 8.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.8 gi|305662446|ref|YP_003858734.1| - 0.0031 16.4 0.0 0.0052 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.7 gi|305662446|ref|YP_003858734.1| - 0.018 14.1 0.0 0.031 13.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin NB-ARC PF00931.17 gi|305662446|ref|YP_003858734.1| - 0.02 13.7 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|305662446|ref|YP_003858734.1| - 0.02 15.7 2.8 0.072 13.9 1.9 2.3 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|305662446|ref|YP_003858734.1| - 0.022 14.4 0.0 0.089 12.5 0.0 2.1 1 0 0 1 1 1 0 Part of AAA domain DEAD PF00270.24 gi|305662446|ref|YP_003858734.1| - 0.028 13.8 1.1 1.9 7.9 0.1 2.7 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|305662446|ref|YP_003858734.1| - 0.033 13.9 0.1 0.14 11.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|305662446|ref|YP_003858734.1| - 0.038 13.6 0.7 0.54 9.8 0.5 2.2 1 1 0 1 1 1 0 Bacterial dnaA protein Mg_chelatase_2 PF13335.1 gi|305662446|ref|YP_003858734.1| - 0.05 13.9 0.3 0.11 12.9 0.2 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Torsin PF06309.6 gi|305662446|ref|YP_003858734.1| - 0.068 13.0 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Torsin RNA_helicase PF00910.17 gi|305662446|ref|YP_003858734.1| - 0.068 13.3 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.9 gi|305662446|ref|YP_003858734.1| - 0.16 10.9 0.0 0.33 9.8 0.0 1.5 1 0 0 1 1 1 0 PIF1-like helicase AAA_14 PF13173.1 gi|305662446|ref|YP_003858734.1| - 0.26 11.1 2.2 0.29 11.0 0.2 2.2 2 1 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|305662446|ref|YP_003858734.1| - 0.47 10.7 0.0 0.47 10.7 0.0 2.3 3 0 0 3 3 1 0 AAA domain DUF99 PF01949.11 gi|305662447|ref|YP_003858735.1| - 9.8e-37 125.8 0.2 1.2e-36 125.5 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 AdoHcyase PF05221.12 gi|305662448|ref|YP_003858736.1| - 4.8e-70 235.5 0.1 5.6e-70 235.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|305662448|ref|YP_003858736.1| - 3e-57 193.0 1.1 5.3e-57 192.1 0.8 1.4 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|305662448|ref|YP_003858736.1| - 2.2e-11 43.2 0.3 4.6e-11 42.1 0.2 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|305662448|ref|YP_003858736.1| - 2.5e-08 33.4 0.3 4.1e-08 32.7 0.2 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|305662448|ref|YP_003858736.1| - 0.0048 16.4 0.9 0.016 14.7 0.5 1.9 1 1 1 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain THF_DHG_CYH_C PF02882.14 gi|305662448|ref|YP_003858736.1| - 0.011 14.8 0.5 0.059 12.4 0.3 2.0 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TrkA_N PF02254.13 gi|305662448|ref|YP_003858736.1| - 0.017 15.1 0.1 0.046 13.7 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain ELFV_dehydrog PF00208.16 gi|305662448|ref|YP_003858736.1| - 0.021 14.4 0.2 0.058 12.9 0.1 1.8 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 3HCDH_N PF02737.13 gi|305662448|ref|YP_003858736.1| - 0.084 12.5 1.0 0.17 11.5 0.7 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|305662448|ref|YP_003858736.1| - 0.12 12.8 0.6 0.28 11.6 0.2 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AAA_18 PF13238.1 gi|305662449|ref|YP_003858737.1| - 9e-15 55.1 0.4 1.2e-14 54.6 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305662449|ref|YP_003858737.1| - 7.6e-10 39.6 0.4 1.3e-09 38.9 0.3 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|305662449|ref|YP_003858737.1| - 4.6e-06 26.5 0.0 8.1e-06 25.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|305662449|ref|YP_003858737.1| - 0.00011 22.0 0.0 0.00014 21.8 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase KaiC PF06745.8 gi|305662449|ref|YP_003858737.1| - 0.0065 15.6 1.3 0.071 12.2 0.0 2.2 2 0 0 2 2 2 1 KaiC KTI12 PF08433.5 gi|305662449|ref|YP_003858737.1| - 0.0084 15.3 0.1 0.011 14.9 0.0 1.4 1 1 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|305662449|ref|YP_003858737.1| - 0.016 14.2 0.0 0.037 13.1 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|305662449|ref|YP_003858737.1| - 0.053 12.9 0.7 0.2 11.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain RNA_binding PF01877.12 gi|305662450|ref|YP_003858738.1| - 3.9e-26 91.4 1.2 4.5e-26 91.1 0.8 1.0 1 0 0 1 1 1 1 RNA binding Acatn PF13000.2 gi|305662450|ref|YP_003858738.1| - 0.019 13.4 0.4 0.019 13.4 0.3 1.0 1 0 0 1 1 1 0 Acetyl-coenzyme A transporter 1 Lactamase_B_2 PF12706.2 gi|305662451|ref|YP_003858739.1| - 1.3e-22 80.2 0.0 1.6e-22 79.9 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305662451|ref|YP_003858739.1| - 1.5e-08 34.5 0.0 4.2e-08 33.0 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|305662451|ref|YP_003858739.1| - 0.025 14.2 0.0 0.053 13.2 0.0 1.5 1 1 0 1 1 1 0 Beta-lactamase superfamily domain UPF0020 PF01170.13 gi|305662452|ref|YP_003858740.1| - 3.3e-32 111.4 0.0 4.4e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|305662452|ref|YP_003858740.1| - 3.3e-12 46.4 0.0 5.6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|305662452|ref|YP_003858740.1| - 2.6e-08 33.6 0.1 0.0016 17.9 0.0 2.4 2 1 0 2 2 2 2 DNA methylase Methyltransf_15 PF09445.5 gi|305662452|ref|YP_003858740.1| - 4.1e-08 32.9 0.1 7e-08 32.2 0.1 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|305662452|ref|YP_003858740.1| - 1.4e-07 31.0 0.0 2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|305662452|ref|YP_003858740.1| - 4.4e-05 22.9 0.0 6.8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 N2227 PF07942.7 gi|305662452|ref|YP_003858740.1| - 0.0009 18.2 0.1 0.0084 15.0 0.0 2.1 2 1 0 3 3 3 1 N2227-like protein Methyltransf_31 PF13847.1 gi|305662452|ref|YP_003858740.1| - 0.013 15.1 0.4 0.054 13.0 0.1 2.2 2 1 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.11 gi|305662452|ref|YP_003858740.1| - 0.038 13.0 0.0 0.085 11.9 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase Pribosyltran PF00156.22 gi|305662453|ref|YP_003858741.1| - 1.4e-15 57.1 0.6 2.4e-15 56.3 0.4 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyltran_N PF13793.1 gi|305662453|ref|YP_003858741.1| - 2.7e-15 56.1 0.0 8.1e-12 44.9 0.0 2.4 2 0 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyl_synth PF14572.1 gi|305662453|ref|YP_003858741.1| - 7e-12 45.4 1.1 2.3e-11 43.7 0.8 1.7 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|305662453|ref|YP_003858741.1| - 0.00011 21.4 0.1 0.00017 20.8 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|305662453|ref|YP_003858741.1| - 0.05 12.9 0.1 0.074 12.3 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Fer4_12 PF13353.1 gi|305662454|ref|YP_003858742.1| - 0.00028 21.0 0.7 0.0017 18.4 0.0 2.4 2 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305662454|ref|YP_003858742.1| - 0.0075 16.2 0.1 0.084 12.9 0.0 2.3 2 0 0 2 2 2 1 4Fe-4S single cluster domain Cg6151-P PF10233.4 gi|305662454|ref|YP_003858742.1| - 0.032 14.1 0.3 0.12 12.3 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein CG6151-P FANCL_C PF11793.3 gi|305662454|ref|YP_003858742.1| - 0.045 13.7 1.3 8.2 6.4 0.1 2.6 2 0 0 2 2 2 0 FANCL C-terminal domain ATP_bind_1 PF03029.12 gi|305662455|ref|YP_003858743.1| - 2e-54 184.6 0.0 2.3e-54 184.4 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|305662455|ref|YP_003858743.1| - 0.00033 20.7 0.0 0.0078 16.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain CbiA PF01656.18 gi|305662455|ref|YP_003858743.1| - 0.0016 17.8 0.0 0.0033 16.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.1 gi|305662455|ref|YP_003858743.1| - 0.0028 18.4 0.1 0.0064 17.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|305662455|ref|YP_003858743.1| - 0.0038 17.3 0.0 0.009 16.1 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_16 PF13191.1 gi|305662455|ref|YP_003858743.1| - 0.0049 16.8 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain PduV-EutP PF10662.4 gi|305662455|ref|YP_003858743.1| - 0.0055 16.1 0.0 21 4.5 0.0 3.6 3 1 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|305662455|ref|YP_003858743.1| - 0.01 15.2 0.0 0.013 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|305662455|ref|YP_003858743.1| - 0.015 15.5 0.0 0.034 14.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|305662455|ref|YP_003858743.1| - 0.024 13.5 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MMR_HSR1 PF01926.18 gi|305662455|ref|YP_003858743.1| - 0.024 14.5 0.0 0.068 13.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|305662455|ref|YP_003858743.1| - 0.026 14.4 0.0 0.047 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|305662455|ref|YP_003858743.1| - 0.028 13.6 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|305662455|ref|YP_003858743.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein APS_kinase PF01583.15 gi|305662455|ref|YP_003858743.1| - 0.032 13.9 0.0 0.052 13.2 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase T2SE PF00437.15 gi|305662455|ref|YP_003858743.1| - 0.052 12.4 0.0 0.14 11.0 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein ArsA_ATPase PF02374.10 gi|305662455|ref|YP_003858743.1| - 0.053 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Anion-transporting ATPase NTPase_1 PF03266.10 gi|305662455|ref|YP_003858743.1| - 0.088 12.5 0.0 0.43 10.2 0.0 2.1 3 0 0 3 3 3 0 NTPase Sigma54_activ_2 PF14532.1 gi|305662455|ref|YP_003858743.1| - 0.1 12.6 0.0 5.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PIN PF01850.16 gi|305662455|ref|YP_003858743.1| - 0.14 12.5 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 PIN domain AAA_24 PF13479.1 gi|305662455|ref|YP_003858743.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|305662455|ref|YP_003858743.1| - 0.16 10.7 0.0 0.4 9.4 0.0 1.6 2 0 0 2 2 2 0 ArgK protein Methyltransf_32 PF13679.1 gi|305662455|ref|YP_003858743.1| - 0.17 11.5 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CENP-F_leu_zip PF10473.4 gi|305662456|ref|YP_003858744.1| - 1.5e-07 31.3 49.0 4.4e-05 23.3 16.4 3.5 1 1 3 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|305662456|ref|YP_003858744.1| - 2e-07 30.9 34.8 0.00065 19.5 6.6 3.5 1 1 2 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|305662456|ref|YP_003858744.1| - 4e-07 29.0 50.5 2.6e-05 23.0 18.9 2.5 2 1 0 2 2 2 2 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|305662456|ref|YP_003858744.1| - 1.7e-05 24.1 13.5 0.0047 16.1 2.3 2.5 1 1 1 2 2 2 2 Reovirus sigma C capsid protein NPV_P10 PF05531.7 gi|305662456|ref|YP_003858744.1| - 0.00019 21.6 32.7 0.0031 17.7 1.8 5.1 1 1 5 6 6 6 3 Nucleopolyhedrovirus P10 protein WEMBL PF05701.6 gi|305662456|ref|YP_003858744.1| - 0.00051 18.6 36.3 0.0054 15.2 25.2 2.0 1 1 0 1 1 1 1 Weak chloroplast movement under blue light DUF869 PF05911.6 gi|305662456|ref|YP_003858744.1| - 0.00083 17.7 28.8 0.0011 17.2 20.0 1.2 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF1204 PF06721.6 gi|305662456|ref|YP_003858744.1| - 0.0017 17.6 7.4 0.0017 17.6 5.2 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF1204) TMF_TATA_bd PF12325.3 gi|305662456|ref|YP_003858744.1| - 0.0024 17.6 43.4 0.0036 17.0 4.6 4.3 2 1 2 4 4 4 2 TATA element modulatory factor 1 TATA binding FlaC_arch PF05377.6 gi|305662456|ref|YP_003858744.1| - 0.0028 17.5 49.3 0.015 15.1 2.4 7.0 2 2 4 6 6 6 2 Flagella accessory protein C (FlaC) DUF948 PF06103.6 gi|305662456|ref|YP_003858744.1| - 0.0029 17.4 21.3 0.31 10.9 0.7 4.1 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) TBPIP PF07106.8 gi|305662456|ref|YP_003858744.1| - 0.0038 16.7 53.5 0.059 12.9 9.3 3.7 1 1 1 3 3 3 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1664 PF07889.7 gi|305662456|ref|YP_003858744.1| - 0.0091 15.7 34.7 0.058 13.1 3.6 4.2 1 1 4 5 5 5 1 Protein of unknown function (DUF1664) HalX PF08663.5 gi|305662456|ref|YP_003858744.1| - 0.016 15.1 17.0 0.25 11.3 0.1 5.3 3 2 3 6 6 5 0 HalX domain DUF1644 PF07800.7 gi|305662456|ref|YP_003858744.1| - 0.017 15.0 2.4 0.034 14.0 1.7 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1644) TPR_MLP1_2 PF07926.7 gi|305662456|ref|YP_003858744.1| - 0.018 14.7 7.2 0.018 14.7 5.0 4.2 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Laminin_II PF06009.7 gi|305662456|ref|YP_003858744.1| - 0.019 14.7 41.8 0.064 13.0 6.5 3.6 2 2 2 4 4 4 0 Laminin Domain II AAA_13 PF13166.1 gi|305662456|ref|YP_003858744.1| - 0.021 13.3 47.6 0.33 9.3 7.1 2.5 1 1 1 2 2 2 0 AAA domain Laminin_I PF06008.9 gi|305662456|ref|YP_003858744.1| - 0.022 14.0 34.1 0.026 13.8 12.7 2.5 2 1 0 2 2 2 0 Laminin Domain I Hemerythrin PF01814.18 gi|305662456|ref|YP_003858744.1| - 0.027 14.6 5.3 3.9 7.6 0.3 3.4 2 1 1 3 3 3 0 Hemerythrin HHE cation binding domain IncA PF04156.9 gi|305662456|ref|YP_003858744.1| - 0.032 13.8 45.8 1.1 8.8 15.7 3.2 1 1 1 2 2 2 0 IncA protein FliJ PF02050.11 gi|305662456|ref|YP_003858744.1| - 0.032 14.2 37.6 0.047 13.7 11.7 3.7 1 1 1 3 3 3 0 Flagellar FliJ protein Prefoldin_2 PF01920.15 gi|305662456|ref|YP_003858744.1| - 0.033 13.9 52.5 0.15 11.8 3.0 6.5 2 2 4 6 6 6 0 Prefoldin subunit IFT57 PF10498.4 gi|305662456|ref|YP_003858744.1| - 0.035 12.8 48.3 0.24 10.0 8.7 3.3 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 MscS_porin PF12795.2 gi|305662456|ref|YP_003858744.1| - 0.074 12.3 40.3 0.23 10.7 11.3 2.5 2 1 0 2 2 2 0 Mechanosensitive ion channel porin domain WXG100 PF06013.7 gi|305662456|ref|YP_003858744.1| - 0.081 12.9 11.9 5.7 7.0 0.1 5.5 4 2 1 5 5 5 0 Proteins of 100 residues with WXG HrpB7 PF09486.5 gi|305662456|ref|YP_003858744.1| - 0.089 12.7 13.8 1.1 9.1 0.0 4.0 2 2 2 5 5 4 0 Bacterial type III secretion protein (HrpB7) Occludin_ELL PF07303.8 gi|305662456|ref|YP_003858744.1| - 0.09 13.5 34.1 0.25 12.0 3.1 4.2 1 1 3 4 4 3 0 Occludin homology domain DUF3584 PF12128.3 gi|305662456|ref|YP_003858744.1| - 0.11 9.8 35.4 0.26 8.5 5.6 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3584) MCPsignal PF00015.16 gi|305662456|ref|YP_003858744.1| - 0.11 12.0 15.7 1.7 8.1 5.7 3.2 2 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain APG6 PF04111.7 gi|305662456|ref|YP_003858744.1| - 0.12 11.4 44.3 0.017 14.2 12.5 3.0 1 1 1 3 3 3 0 Autophagy protein Apg6 ApoO PF09769.4 gi|305662456|ref|YP_003858744.1| - 0.13 12.0 8.1 1 9.0 0.9 3.5 2 1 1 3 3 3 0 Apolipoprotein O FliD_N PF02465.13 gi|305662456|ref|YP_003858744.1| - 0.14 12.5 21.9 0.98 9.8 0.9 4.4 2 2 1 4 4 3 0 Flagellar hook-associated protein 2 N-terminus COG2 PF06148.6 gi|305662456|ref|YP_003858744.1| - 0.17 11.7 34.6 0.45 10.3 6.9 3.8 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.11 gi|305662456|ref|YP_003858744.1| - 0.18 10.6 27.1 0.37 9.6 3.0 3.4 2 1 1 3 3 3 0 RmuC family DUF342 PF03961.8 gi|305662456|ref|YP_003858744.1| - 0.18 10.2 49.6 0.071 11.5 6.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF342) DUF4559 PF15112.1 gi|305662456|ref|YP_003858744.1| - 0.22 10.6 33.0 0.43 9.6 11.9 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) Filament PF00038.16 gi|305662456|ref|YP_003858744.1| - 0.23 10.9 45.2 0.14 11.6 25.7 3.1 1 1 1 2 2 2 0 Intermediate filament protein ATG16 PF08614.6 gi|305662456|ref|YP_003858744.1| - 0.23 11.2 53.3 1.8 8.3 9.6 3.6 1 1 2 4 4 4 0 Autophagy protein 16 (ATG16) DUF2408 PF10303.4 gi|305662456|ref|YP_003858744.1| - 0.46 10.5 37.5 0.31 11.1 1.5 4.1 2 1 1 4 4 4 0 Protein of unknown function (DUF2408) Flagellin_N PF00669.15 gi|305662456|ref|YP_003858744.1| - 0.56 9.9 17.0 0.41 10.4 0.6 3.8 3 1 0 3 3 3 0 Bacterial flagellin N-terminal helical region GAS PF13851.1 gi|305662456|ref|YP_003858744.1| - 0.79 8.8 60.0 0.8 8.8 5.1 4.0 1 1 2 4 4 4 0 Growth-arrest specific micro-tubule binding COG5 PF10392.4 gi|305662456|ref|YP_003858744.1| - 1.1 9.1 33.0 0.6 10.0 3.1 4.1 1 1 3 4 4 4 0 Golgi transport complex subunit 5 Nup54 PF13874.1 gi|305662456|ref|YP_003858744.1| - 1.2 8.7 34.7 0.081 12.5 3.1 3.8 2 1 2 4 4 4 0 Nucleoporin complex subunit 54 DUF3450 PF11932.3 gi|305662456|ref|YP_003858744.1| - 1.3 8.2 28.8 0.023 13.9 3.3 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3450) Atg14 PF10186.4 gi|305662456|ref|YP_003858744.1| - 1.9 7.3 53.3 12 4.7 9.7 3.3 2 2 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Flagellin_C PF00700.16 gi|305662456|ref|YP_003858744.1| - 2 8.6 14.9 1.8 8.8 0.3 4.0 2 1 1 4 4 3 0 Bacterial flagellin C-terminal helical region Adeno_PIX PF03955.9 gi|305662456|ref|YP_003858744.1| - 2.3 8.7 19.8 0.67 10.5 0.6 4.8 3 2 2 5 5 5 0 Adenovirus hexon-associated protein (IX) DUF2422 PF10337.4 gi|305662456|ref|YP_003858744.1| - 2.5 6.7 5.6 5.8 5.5 3.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2422) DUF2203 PF09969.4 gi|305662456|ref|YP_003858744.1| - 3.1 8.0 25.7 4 7.6 0.9 3.7 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) DASH_Dam1 PF08653.5 gi|305662456|ref|YP_003858744.1| - 3.6 7.4 16.8 13 5.6 0.1 5.1 4 1 1 5 5 5 0 DASH complex subunit Dam1 Seryl_tRNA_N PF02403.17 gi|305662456|ref|YP_003858744.1| - 3.7 7.5 54.7 0.028 14.4 13.1 4.7 1 1 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Bacillus_HBL PF05791.6 gi|305662456|ref|YP_003858744.1| - 4 6.7 41.7 0.54 9.6 6.2 4.1 2 2 3 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) Mnd1 PF03962.10 gi|305662456|ref|YP_003858744.1| - 4 7.0 38.8 10 5.7 10.3 4.0 1 1 4 5 5 5 0 Mnd1 family Tup_N PF08581.5 gi|305662456|ref|YP_003858744.1| - 4 7.6 40.1 0.071 13.3 3.8 5.3 1 1 5 6 6 6 0 Tup N-terminal DUF4201 PF13870.1 gi|305662456|ref|YP_003858744.1| - 4.4 6.7 55.7 14 5.0 12.5 4.2 2 2 0 2 2 2 0 Domain of unknown function (DUF4201) Hrs_helical PF12210.3 gi|305662456|ref|YP_003858744.1| - 4.8 7.5 27.0 2.1 8.6 0.8 4.7 2 2 2 4 4 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Fez1 PF06818.10 gi|305662456|ref|YP_003858744.1| - 5 7.1 32.2 1.4 8.8 4.7 2.7 1 1 1 2 2 2 0 Fez1 Transposase_22 PF02994.9 gi|305662456|ref|YP_003858744.1| - 6.4 5.1 44.6 2.8 6.3 19.2 2.1 1 1 0 2 2 2 0 L1 transposable element DUF972 PF06156.8 gi|305662456|ref|YP_003858744.1| - 7.2 7.0 45.1 10 6.5 5.4 4.6 2 2 2 4 4 3 0 Protein of unknown function (DUF972) Prefoldin PF02996.12 gi|305662456|ref|YP_003858744.1| - 8 6.1 41.2 0.31 10.6 3.2 6.6 2 2 4 7 7 7 0 Prefoldin subunit LXG PF04740.7 gi|305662456|ref|YP_003858744.1| - 8 6.1 38.0 4.8 6.9 1.6 4.1 1 1 2 4 4 4 0 LXG domain of WXG superfamily TMPIT PF07851.8 gi|305662456|ref|YP_003858744.1| - 8.4 5.3 34.9 0.74 8.8 2.5 3.2 1 1 4 5 5 5 0 TMPIT-like protein DUF373 PF04123.8 gi|305662457|ref|YP_003858745.1| - 5.2e-60 203.2 25.0 7e-60 202.8 17.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PAZ_siRNAbind PF12212.3 gi|305662457|ref|YP_003858745.1| - 0.031 13.9 0.2 0.1 12.2 0.1 1.9 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain Prenyltransf PF01255.14 gi|305662458|ref|YP_003858746.1| - 1.5e-76 256.4 0.0 1.8e-76 256.1 0.0 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Ribosomal_S8e PF01201.17 gi|305662459|ref|YP_003858747.1| - 8.6e-36 123.0 1.8 9.5e-36 122.8 1.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e Crystall_2 PF09076.5 gi|305662459|ref|YP_003858747.1| - 0.084 12.6 0.1 0.28 10.9 0.1 1.9 1 1 1 2 2 2 0 Beta/Gamma crystallin SRP19 PF01922.12 gi|305662460|ref|YP_003858748.1| - 1.7e-20 73.3 0.0 2e-20 73.1 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Gar1 PF04410.9 gi|305662461|ref|YP_003858749.1| - 7.3e-11 41.7 0.1 7.6e-11 41.6 0.1 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region TFIIB PF00382.14 gi|305662462|ref|YP_003858750.1| - 8.5e-18 63.9 0.1 2.9e-13 49.4 0.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|305662462|ref|YP_003858750.1| - 5.9e-11 41.5 0.3 1.1e-10 40.6 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|305662462|ref|YP_003858750.1| - 3.6e-05 23.3 0.5 0.0052 16.3 0.1 2.2 1 1 1 2 2 2 2 Cyclin, N-terminal domain Sigma70_r4 PF04545.11 gi|305662462|ref|YP_003858750.1| - 0.0005 19.3 0.2 0.0096 15.2 0.0 2.7 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|305662462|ref|YP_003858750.1| - 0.0055 16.3 0.4 0.84 9.3 0.1 2.7 2 0 0 2 2 2 1 Homeodomain-like domain SpoIIID PF12116.3 gi|305662462|ref|YP_003858750.1| - 0.009 15.9 1.7 0.48 10.3 0.6 2.6 2 0 0 2 2 2 1 Stage III sporulation protein D HTH_31 PF13560.1 gi|305662462|ref|YP_003858750.1| - 0.017 15.3 0.0 1.6 8.9 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|305662462|ref|YP_003858750.1| - 0.062 12.8 0.0 2.1 7.9 0.0 2.8 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_6 PF01418.12 gi|305662462|ref|YP_003858750.1| - 0.11 12.2 1.2 36 4.1 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain, rpiR family HTH_37 PF13744.1 gi|305662462|ref|YP_003858750.1| - 0.14 12.0 0.9 0.73 9.6 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_3 PF01381.17 gi|305662462|ref|YP_003858750.1| - 0.16 11.8 1.0 1.4 8.8 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix Rrf2 PF02082.15 gi|305662462|ref|YP_003858750.1| - 0.17 12.0 1.1 5.3 7.2 0.0 3.1 3 0 0 3 3 3 0 Transcriptional regulator RNA_pol_Rpc34 PF05158.7 gi|305662463|ref|YP_003858751.1| - 7.4e-07 28.6 3.0 0.007 15.5 0.1 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit B-block_TFIIIC PF04182.7 gi|305662463|ref|YP_003858751.1| - 0.15 11.9 0.4 0.33 10.8 0.2 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC TRM PF02005.11 gi|305662464|ref|YP_003858752.1| - 4.3e-84 282.6 0.2 5.1e-84 282.3 0.2 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_31 PF13847.1 gi|305662464|ref|YP_003858752.1| - 2.7e-06 27.0 0.0 4.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|305662464|ref|YP_003858752.1| - 1.5e-05 24.6 0.2 2.9e-05 23.7 0.2 1.6 1 1 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|305662464|ref|YP_003858752.1| - 0.00015 21.2 0.0 0.00024 20.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Zn-ribbon_8 PF09723.5 gi|305662464|ref|YP_003858752.1| - 0.0017 18.2 0.6 0.0034 17.3 0.4 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Methyltransf_26 PF13659.1 gi|305662464|ref|YP_003858752.1| - 0.0051 16.8 0.0 0.0096 15.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain 3H PF02829.9 gi|305662464|ref|YP_003858752.1| - 0.0054 16.7 0.0 0.019 14.9 0.0 1.9 1 0 0 1 1 1 1 3H domain OrfB_Zn_ribbon PF07282.6 gi|305662464|ref|YP_003858752.1| - 0.014 15.0 0.7 0.94 9.1 0.1 2.6 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Cons_hypoth95 PF03602.10 gi|305662464|ref|YP_003858752.1| - 0.024 14.0 0.0 0.036 13.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Methyltransf_18 PF12847.2 gi|305662464|ref|YP_003858752.1| - 0.044 14.3 0.0 0.086 13.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|305662464|ref|YP_003858752.1| - 0.047 13.2 0.0 0.086 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Elf1 PF05129.8 gi|305662464|ref|YP_003858752.1| - 0.13 11.9 1.3 1.1 9.0 0.2 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|305662464|ref|YP_003858752.1| - 0.18 11.1 1.4 0.46 9.8 1.0 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DUF2082 PF09855.4 gi|305662464|ref|YP_003858752.1| - 0.49 10.2 3.4 0.82 9.5 0.4 2.4 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) NTPase_1 PF03266.10 gi|305662465|ref|YP_003858753.1| - 1.9e-44 151.3 0.1 2.1e-44 151.1 0.0 1.0 1 0 0 1 1 1 1 NTPase AAA_17 PF13207.1 gi|305662465|ref|YP_003858753.1| - 1e-06 29.5 0.4 2.3e-06 28.4 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305662465|ref|YP_003858753.1| - 2.2e-05 24.0 0.3 0.066 12.6 0.1 2.3 1 1 1 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|305662465|ref|YP_003858753.1| - 6.4e-05 23.0 0.0 0.00047 20.2 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305662465|ref|YP_003858753.1| - 0.00016 21.9 0.1 0.00028 21.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|305662465|ref|YP_003858753.1| - 0.00033 20.5 0.5 0.00066 19.6 0.4 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|305662465|ref|YP_003858753.1| - 0.00041 20.1 0.5 0.0012 18.6 0.4 2.1 1 1 0 1 1 1 1 Archaeal ATPase ArgK PF03308.11 gi|305662465|ref|YP_003858753.1| - 0.00061 18.6 0.1 0.0009 18.0 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|305662465|ref|YP_003858753.1| - 0.0028 17.3 0.1 0.0057 16.3 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|305662465|ref|YP_003858753.1| - 0.0029 17.8 0.0 0.0078 16.4 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) APS_kinase PF01583.15 gi|305662465|ref|YP_003858753.1| - 0.0031 17.2 0.0 0.0056 16.3 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_19 PF13245.1 gi|305662465|ref|YP_003858753.1| - 0.004 16.8 0.0 0.0086 15.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_16 PF13191.1 gi|305662465|ref|YP_003858753.1| - 0.0087 16.0 0.0 0.0095 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain KTI12 PF08433.5 gi|305662465|ref|YP_003858753.1| - 0.01 15.0 0.1 0.056 12.6 0.0 2.0 2 0 0 2 2 2 0 Chromatin associated protein KTI12 DUF258 PF03193.11 gi|305662465|ref|YP_003858753.1| - 0.012 14.8 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|305662465|ref|YP_003858753.1| - 0.022 14.6 0.2 0.08 12.8 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|305662465|ref|YP_003858753.1| - 0.046 13.4 0.1 0.57 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|305662465|ref|YP_003858753.1| - 0.062 13.4 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|305662465|ref|YP_003858753.1| - 0.063 13.1 0.1 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|305662465|ref|YP_003858753.1| - 0.07 12.6 0.0 0.18 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.1 gi|305662465|ref|YP_003858753.1| - 0.071 12.6 0.0 0.083 12.4 0.0 1.1 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.13 gi|305662465|ref|YP_003858753.1| - 0.074 12.3 0.0 0.16 11.2 0.0 1.6 1 0 0 1 1 1 0 Ferrous iron transport protein B NACHT PF05729.7 gi|305662465|ref|YP_003858753.1| - 0.079 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|305662465|ref|YP_003858753.1| - 0.086 13.1 0.1 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 ABC transporter DUF2075 PF09848.4 gi|305662465|ref|YP_003858753.1| - 0.086 11.7 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|305662465|ref|YP_003858753.1| - 0.09 12.3 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|305662465|ref|YP_003858753.1| - 0.091 11.5 0.5 0.14 11.0 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain Miro PF08477.8 gi|305662465|ref|YP_003858753.1| - 0.11 12.9 0.0 0.45 11.0 0.0 2.0 1 1 0 2 2 2 0 Miro-like protein AAA_28 PF13521.1 gi|305662465|ref|YP_003858753.1| - 0.11 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_19 PF12844.2 gi|305662466|ref|YP_003858754.1| - 5.7e-13 48.6 0.6 5.9e-12 45.4 0.2 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|305662466|ref|YP_003858754.1| - 1.7e-07 30.9 3.0 2.4e-07 30.5 0.0 2.8 4 0 0 4 4 4 1 Helix-turn-helix HTH_31 PF13560.1 gi|305662466|ref|YP_003858754.1| - 0.00065 19.8 0.0 0.0019 18.3 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|305662466|ref|YP_003858754.1| - 0.0032 17.0 0.2 0.0097 15.5 0.2 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|305662466|ref|YP_003858754.1| - 0.017 15.3 0.0 0.094 12.9 0.0 2.3 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain MerR PF00376.18 gi|305662466|ref|YP_003858754.1| - 0.021 14.3 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 0 MerR family regulatory protein MerR_1 PF13411.1 gi|305662466|ref|YP_003858754.1| - 0.055 13.2 0.0 0.055 13.2 0.0 2.6 3 0 0 3 3 3 0 MerR HTH family regulatory protein NUMOD1 PF07453.8 gi|305662466|ref|YP_003858754.1| - 0.068 13.0 3.2 7.5 6.5 0.0 3.2 2 0 0 2 2 2 0 NUMOD1 domain HTH_10 PF04967.7 gi|305662466|ref|YP_003858754.1| - 0.079 12.5 0.0 0.29 10.7 0.0 2.0 1 0 0 1 1 1 0 HTH DNA binding domain DUF4375 PF14300.1 gi|305662466|ref|YP_003858754.1| - 0.098 12.6 1.5 2.2 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) Fibrillarin PF01269.12 gi|305662467|ref|YP_003858755.1| - 5.2e-102 339.6 0.0 5.9e-102 339.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.14 gi|305662467|ref|YP_003858755.1| - 0.0012 18.4 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GCD14 PF08704.5 gi|305662467|ref|YP_003858755.1| - 0.0049 16.3 0.1 0.011 15.1 0.0 1.7 1 1 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|305662467|ref|YP_003858755.1| - 0.033 14.2 0.0 0.21 11.6 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain DUF2209 PF09974.4 gi|305662467|ref|YP_003858755.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) Nop PF01798.13 gi|305662468|ref|YP_003858756.1| - 2.2e-53 179.5 0.1 4.1e-53 178.7 0.0 1.4 1 0 0 1 1 1 1 Putative snoRNA binding domain NOSIC PF08060.8 gi|305662468|ref|YP_003858756.1| - 6.2e-22 77.1 0.2 1.4e-21 76.0 0.1 1.7 1 0 0 1 1 1 1 NOSIC (NUC001) domain Apolipoprotein PF01442.13 gi|305662468|ref|YP_003858756.1| - 0.033 13.7 1.2 2.9 7.3 0.0 3.5 4 0 0 4 4 4 0 Apolipoprotein A1/A4/E domain DUF3215 PF11503.3 gi|305662468|ref|YP_003858756.1| - 0.069 12.7 0.6 0.34 10.5 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3215) Ribosomal_S30 PF04758.9 gi|305662469|ref|YP_003858757.1| - 2.7e-09 36.6 0.5 3.9e-09 36.1 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S30 DUF3315 PF11776.3 gi|305662469|ref|YP_003858757.1| - 0.055 12.9 0.7 0.082 12.4 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3315) GatB_N PF02934.10 gi|305662470|ref|YP_003858758.1| - 6.8e-77 258.1 0.1 1e-76 257.5 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|305662470|ref|YP_003858758.1| - 1.1e-19 70.5 1.9 2.6e-19 69.4 1.3 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|305662470|ref|YP_003858758.1| - 6e-13 48.7 0.0 1.9e-12 47.1 0.0 1.9 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|305662470|ref|YP_003858758.1| - 6.5e-06 26.0 0.3 1.7e-05 24.7 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein HTH_9 PF08221.6 gi|305662470|ref|YP_003858758.1| - 0.03 14.1 0.0 0.11 12.3 0.0 2.0 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HHH_3 PF12836.2 gi|305662470|ref|YP_003858758.1| - 0.044 13.7 0.1 0.17 11.8 0.1 2.0 1 0 0 1 1 1 0 Helix-hairpin-helix motif TYW3 PF02676.9 gi|305662471|ref|YP_003858759.1| - 9.8e-41 139.1 0.0 1.3e-40 138.7 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TYW3 PhoH PF02562.11 gi|305662472|ref|YP_003858760.1| - 1.4e-42 145.2 0.0 1.9e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.12 gi|305662472|ref|YP_003858760.1| - 8.6e-11 41.2 1.4 9.6e-08 31.4 0.1 2.7 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|305662472|ref|YP_003858760.1| - 1.9e-08 33.9 0.4 8e-05 22.3 0.0 3.1 3 0 0 3 3 3 2 NusA-like KH domain IstB_IS21 PF01695.12 gi|305662472|ref|YP_003858760.1| - 0.006 16.0 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein KH_1 PF00013.24 gi|305662472|ref|YP_003858760.1| - 0.01 15.4 6.5 0.094 12.3 0.1 2.8 3 0 0 3 3 3 0 KH domain AAA_14 PF13173.1 gi|305662472|ref|YP_003858760.1| - 0.018 14.9 0.0 0.073 12.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|305662472|ref|YP_003858760.1| - 0.034 13.2 0.1 0.075 12.1 0.0 1.5 1 0 0 1 1 1 0 KaiC KH_4 PF13083.1 gi|305662472|ref|YP_003858760.1| - 0.051 13.2 0.1 3 7.5 0.0 2.8 2 0 0 2 2 2 0 KH domain ResIII PF04851.10 gi|305662472|ref|YP_003858760.1| - 0.088 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|305662472|ref|YP_003858760.1| - 0.095 12.1 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 DEAD/DEAH box helicase KH_3 PF13014.1 gi|305662472|ref|YP_003858760.1| - 0.15 11.7 1.1 1.4 8.6 0.1 2.6 2 0 0 2 2 2 0 KH domain CCD PF07860.6 gi|305662474|ref|YP_003858762.1| - 0.019 14.3 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 WisP family C-Terminal Region DNA_primase_lrg PF04104.9 gi|305662475|ref|YP_003858763.1| - 2.6e-28 99.0 0.0 1.5e-27 96.5 0.0 2.2 1 1 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit PCNA_N PF00705.13 gi|305662476|ref|YP_003858764.1| - 3e-15 55.8 0.3 1.1e-14 54.0 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain Rad1 PF02144.11 gi|305662476|ref|YP_003858764.1| - 1.1e-05 24.3 1.9 0.1 11.3 0.0 2.8 1 1 2 3 3 3 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|305662476|ref|YP_003858764.1| - 0.00014 21.0 0.1 0.00025 20.2 0.1 1.5 1 1 0 1 1 1 1 Rad9 PCNA_C PF02747.10 gi|305662476|ref|YP_003858764.1| - 0.00028 20.8 3.5 0.05 13.5 0.1 3.2 1 1 2 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain TF_Zn_Ribbon PF08271.7 gi|305662477|ref|YP_003858765.1| - 6e-10 38.2 2.2 1.2e-09 37.3 1.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.12 gi|305662477|ref|YP_003858765.1| - 0.00086 18.8 1.1 0.0013 18.2 0.8 1.3 1 0 0 1 1 1 1 Ribosomal protein S27 A2L_zn_ribbon PF08792.5 gi|305662477|ref|YP_003858765.1| - 0.0012 18.1 2.6 0.0019 17.5 1.8 1.3 1 0 0 1 1 1 1 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|305662477|ref|YP_003858765.1| - 0.0057 16.9 0.3 0.0096 16.2 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar HTH_28 PF13518.1 gi|305662477|ref|YP_003858765.1| - 0.053 13.5 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|305662477|ref|YP_003858765.1| - 0.059 12.5 0.7 0.1 11.8 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Mga PF05043.8 gi|305662477|ref|YP_003858765.1| - 0.065 13.5 0.1 0.2 11.9 0.1 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_37 PF13744.1 gi|305662477|ref|YP_003858765.1| - 0.088 12.6 0.4 0.2 11.4 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|305662477|ref|YP_003858765.1| - 0.11 12.1 2.0 0.41 10.3 0.8 2.4 1 1 0 1 1 1 0 HTH domain NAC PF01849.13 gi|305662478|ref|YP_003858766.1| - 0.054 13.0 0.0 4.6 6.8 0.0 2.1 2 0 0 2 2 2 0 NAC domain Metallophos_2 PF12850.2 gi|305662479|ref|YP_003858767.1| - 1.5e-29 102.8 0.3 1.7e-29 102.6 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305662479|ref|YP_003858767.1| - 1.7e-09 37.3 1.4 1.8e-08 34.0 1.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|305662479|ref|YP_003858767.1| - 6.1e-06 25.5 0.1 0.0086 15.2 0.0 2.3 1 1 1 2 2 2 2 Metallophosphoesterase, calcineurin superfamily LSM PF01423.17 gi|305662480|ref|YP_003858768.1| - 5.6e-21 73.8 0.1 6.3e-21 73.6 0.1 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|305662480|ref|YP_003858768.1| - 0.028 14.3 0.0 0.039 13.8 0.0 1.3 1 1 0 1 1 1 0 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|305662481|ref|YP_003858769.1| - 2.6e-27 94.3 8.5 2.9e-27 94.2 5.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|305662481|ref|YP_003858769.1| - 0.012 15.4 0.6 0.014 15.1 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon GCC2_GCC3 PF07699.8 gi|305662481|ref|YP_003858769.1| - 0.048 13.2 0.5 0.064 12.8 0.3 1.4 1 0 0 1 1 1 0 GCC2 and GCC3 DUF2688 PF10892.3 gi|305662481|ref|YP_003858769.1| - 0.21 11.2 3.6 0.27 10.9 2.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-ribbon_3 PF13248.1 gi|305662481|ref|YP_003858769.1| - 3.2 7.0 5.9 25 4.2 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain RTC PF01137.16 gi|305662482|ref|YP_003858770.1| - 2e-81 272.1 0.0 2.3e-81 271.9 0.0 1.0 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|305662482|ref|YP_003858770.1| - 2.3e-27 95.0 0.0 4.4e-27 94.0 0.0 1.5 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain CTP_transf_2 PF01467.21 gi|305662483|ref|YP_003858771.1| - 1.4e-15 57.6 0.0 1.8e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase ATP-sulfurylase PF01747.12 gi|305662483|ref|YP_003858771.1| - 0.015 14.6 0.0 3.8 6.7 0.0 2.1 2 0 0 2 2 2 0 ATP-sulfurylase Exonuc_VII_S PF02609.11 gi|305662484|ref|YP_003858772.1| - 0.0049 16.6 1.0 9.8 6.0 0.2 3.5 4 0 0 4 4 4 1 Exonuclease VII small subunit EzrA PF06160.7 gi|305662484|ref|YP_003858772.1| - 0.042 12.0 0.0 0.07 11.2 0.0 1.3 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Pfg27 PF09216.5 gi|305662484|ref|YP_003858772.1| - 0.046 13.3 1.3 0.18 11.3 0.8 1.9 1 1 1 2 2 2 0 Pfg27 SLT_2 PF13406.1 gi|305662484|ref|YP_003858772.1| - 0.14 11.0 0.0 0.26 10.1 0.0 1.4 2 0 0 2 2 2 0 Transglycosylase SLT domain DUF349 PF03993.7 gi|305662484|ref|YP_003858772.1| - 5 7.3 6.4 67 3.7 0.5 3.2 2 1 1 3 3 3 0 Domain of Unknown Function (DUF349) CarboxypepD_reg PF13620.1 gi|305662487|ref|YP_003858775.1| - 1.6e-13 50.4 15.9 9.7e-13 47.9 6.0 2.9 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain NPV_P10 PF05531.7 gi|305662487|ref|YP_003858775.1| - 2e-13 50.3 31.6 0.00044 20.4 2.2 5.9 1 1 5 6 6 6 5 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|305662487|ref|YP_003858775.1| - 2.4e-12 46.7 16.9 0.00021 21.1 0.8 4.2 1 1 3 4 4 4 3 Protein of unknown function (DUF1664) DUF4480 PF13715.1 gi|305662487|ref|YP_003858775.1| - 3.3e-12 46.2 1.4 3.3e-12 46.2 1.0 2.5 2 0 0 2 2 1 1 Domain of unknown function (DUF4480) Baculo_PEP_C PF04513.7 gi|305662487|ref|YP_003858775.1| - 7.4e-12 45.2 30.0 2.5e-06 27.3 11.6 3.1 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|305662487|ref|YP_003858775.1| - 2.7e-10 39.9 31.8 7.2e-06 25.4 11.4 2.4 1 1 1 2 2 2 2 Reovirus sigma C capsid protein A2M_N PF01835.14 gi|305662487|ref|YP_003858775.1| - 3.2e-10 40.1 0.3 1.8e-09 37.7 0.1 2.3 1 1 1 2 2 1 1 MG2 domain EzrA PF06160.7 gi|305662487|ref|YP_003858775.1| - 1.9e-09 36.2 4.9 2.8e-06 25.8 2.2 2.1 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA EMP24_GP25L PF01105.19 gi|305662487|ref|YP_003858775.1| - 9.1e-09 35.2 2.3 0.00048 19.8 0.0 4.5 1 1 1 2 2 2 1 emp24/gp25L/p24 family/GOLD Laminin_II PF06009.7 gi|305662487|ref|YP_003858775.1| - 4.8e-08 32.8 22.8 9.6e-05 22.1 2.6 3.3 1 1 2 3 3 3 3 Laminin Domain II Tropomyosin PF00261.15 gi|305662487|ref|YP_003858775.1| - 5.6e-08 32.1 0.1 9.7e-06 24.8 0.1 2.2 2 0 0 2 2 2 1 Tropomyosin Matrilin_ccoil PF10393.4 gi|305662487|ref|YP_003858775.1| - 6.6e-08 31.7 4.8 0.77 9.1 0.0 7.0 6 2 1 7 7 7 1 Trimeric coiled-coil oligomerisation domain of matrilin AAA_13 PF13166.1 gi|305662487|ref|YP_003858775.1| - 8.9e-08 31.0 11.2 0.00024 19.7 0.7 2.0 1 1 1 2 2 2 2 AAA domain DUF4631 PF15450.1 gi|305662487|ref|YP_003858775.1| - 1.7e-07 29.9 0.3 0.00039 18.8 0.2 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4631) BLOC1_2 PF10046.4 gi|305662487|ref|YP_003858775.1| - 1.8e-07 31.1 12.2 0.0079 16.3 0.3 3.5 1 1 1 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.6 gi|305662487|ref|YP_003858775.1| - 3.5e-07 30.0 17.9 0.038 13.9 0.1 5.5 2 2 3 5 5 5 1 Flagella accessory protein C (FlaC) COG2 PF06148.6 gi|305662487|ref|YP_003858775.1| - 4.1e-07 29.9 10.1 0.13 12.1 0.8 4.4 1 1 2 3 3 3 1 COG (conserved oligomeric Golgi) complex component, COG2 Myosin_tail_1 PF01576.14 gi|305662487|ref|YP_003858775.1| - 8.2e-07 27.1 1.3 1.7e-05 22.7 0.4 2.0 1 1 0 1 1 1 1 Myosin tail Seryl_tRNA_N PF02403.17 gi|305662487|ref|YP_003858775.1| - 1.2e-06 28.4 6.8 0.0015 18.5 2.2 3.1 1 1 2 3 3 3 1 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.14 gi|305662487|ref|YP_003858775.1| - 1.3e-06 26.6 0.9 1.9e-06 26.0 0.6 1.2 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family Spc7 PF08317.6 gi|305662487|ref|YP_003858775.1| - 1.4e-06 27.2 4.5 0.00087 18.0 2.2 2.3 1 1 1 2 2 2 2 Spc7 kinetochore protein TBPIP PF07106.8 gi|305662487|ref|YP_003858775.1| - 1.5e-06 27.9 3.0 0.0072 15.8 1.2 3.2 1 1 2 3 3 3 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) RmuC PF02646.11 gi|305662487|ref|YP_003858775.1| - 1.7e-06 27.1 6.9 0.054 12.3 0.3 3.5 1 1 3 4 4 4 4 RmuC family Prefoldin PF02996.12 gi|305662487|ref|YP_003858775.1| - 2e-06 27.4 3.2 0.18 11.4 0.2 4.2 2 1 0 3 3 3 2 Prefoldin subunit Sec34 PF04136.10 gi|305662487|ref|YP_003858775.1| - 3e-06 27.0 2.4 0.035 13.7 0.5 3.3 1 1 2 3 3 3 2 Sec34-like family Filament PF00038.16 gi|305662487|ref|YP_003858775.1| - 3.7e-06 26.6 0.0 5.8e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Intermediate filament protein TMF_DNA_bd PF12329.3 gi|305662487|ref|YP_003858775.1| - 5.1e-06 26.1 5.4 0.069 12.9 0.5 4.4 1 1 4 5 5 5 1 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|305662487|ref|YP_003858775.1| - 7e-06 26.3 0.3 0.16 12.3 0.0 3.7 2 2 2 4 4 3 1 SlyX DUF4140 PF13600.1 gi|305662487|ref|YP_003858775.1| - 7.5e-06 26.3 3.5 0.0077 16.6 0.0 4.3 2 1 3 5 5 4 1 N-terminal domain of unknown function (DUF4140) Tropomyosin_1 PF12718.2 gi|305662487|ref|YP_003858775.1| - 7.6e-06 25.8 0.0 0.0034 17.2 0.1 2.8 1 1 0 2 2 2 1 Tropomyosin like Laminin_I PF06008.9 gi|305662487|ref|YP_003858775.1| - 8.3e-06 25.3 4.9 1.5e-05 24.4 3.0 2.0 1 1 0 1 1 1 1 Laminin Domain I ADIP PF11559.3 gi|305662487|ref|YP_003858775.1| - 9.7e-06 25.5 0.2 0.35 10.7 0.1 3.3 1 1 1 3 3 3 2 Afadin- and alpha -actinin-Binding WEMBL PF05701.6 gi|305662487|ref|YP_003858775.1| - 1.3e-05 23.9 3.4 0.00032 19.3 1.8 1.9 1 1 1 2 2 2 1 Weak chloroplast movement under blue light Syntaxin PF00804.20 gi|305662487|ref|YP_003858775.1| - 1.5e-05 25.0 8.8 0.13 12.4 0.1 3.7 1 1 3 4 4 4 2 Syntaxin IFT57 PF10498.4 gi|305662487|ref|YP_003858775.1| - 1.5e-05 23.8 1.9 0.01 14.6 1.0 2.3 1 1 1 2 2 2 1 Intra-flagellar transport protein 57 TMF_TATA_bd PF12325.3 gi|305662487|ref|YP_003858775.1| - 1.9e-05 24.4 0.0 0.98 9.1 0.0 3.2 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding WXG100 PF06013.7 gi|305662487|ref|YP_003858775.1| - 2e-05 24.4 1.0 0.45 10.5 0.2 4.3 1 1 2 3 3 3 1 Proteins of 100 residues with WXG DUF4198 PF10670.4 gi|305662487|ref|YP_003858775.1| - 2.4e-05 24.4 1.7 0.003 17.5 0.7 2.3 1 1 1 2 2 2 1 Domain of unknown function (DUF4198) PspA_IM30 PF04012.7 gi|305662487|ref|YP_003858775.1| - 3.2e-05 23.3 1.6 0.00042 19.7 0.5 2.4 1 1 1 2 2 2 1 PspA/IM30 family Nup54 PF13874.1 gi|305662487|ref|YP_003858775.1| - 3.4e-05 23.5 0.1 0.4 10.3 0.1 3.2 1 1 2 3 3 3 2 Nucleoporin complex subunit 54 GAS PF13851.1 gi|305662487|ref|YP_003858775.1| - 3.5e-05 23.1 0.1 0.00015 21.0 0.1 1.9 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding DUF3584 PF12128.3 gi|305662487|ref|YP_003858775.1| - 3.7e-05 21.2 0.1 6e-05 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) HrpB7 PF09486.5 gi|305662487|ref|YP_003858775.1| - 4.5e-05 23.4 0.3 0.011 15.7 0.1 3.0 1 1 3 4 4 4 2 Bacterial type III secretion protein (HrpB7) AAA_27 PF13514.1 gi|305662487|ref|YP_003858775.1| - 5.4e-05 21.1 0.1 8.6e-05 20.4 0.1 1.3 1 0 0 1 1 1 1 AAA domain DUF812 PF05667.6 gi|305662487|ref|YP_003858775.1| - 5.8e-05 21.8 4.8 0.059 11.8 0.3 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF812) Bacillus_HBL PF05791.6 gi|305662487|ref|YP_003858775.1| - 6.2e-05 22.4 10.5 0.038 13.3 1.7 3.8 1 1 3 4 4 4 3 Bacillus haemolytic enterotoxin (HBL) DUF972 PF06156.8 gi|305662487|ref|YP_003858775.1| - 7.2e-05 23.0 1.0 0.59 10.5 0.1 3.4 1 1 1 3 3 3 1 Protein of unknown function (DUF972) Herpes_U30 PF04523.8 gi|305662487|ref|YP_003858775.1| - 8e-05 20.3 0.3 0.00012 19.6 0.2 1.3 1 0 0 1 1 1 1 Herpes virus tegument protein U30 ATG16 PF08614.6 gi|305662487|ref|YP_003858775.1| - 9.7e-05 22.2 2.4 0.0036 17.1 1.5 2.7 2 1 0 2 2 2 1 Autophagy protein 16 (ATG16) DUF948 PF06103.6 gi|305662487|ref|YP_003858775.1| - 9.9e-05 22.1 17.3 0.00075 19.3 2.5 4.7 3 1 2 5 5 3 3 Bacterial protein of unknown function (DUF948) Fib_alpha PF08702.5 gi|305662487|ref|YP_003858775.1| - 0.00012 22.2 12.4 0.025 14.7 4.0 3.5 1 1 1 3 3 3 1 Fibrinogen alpha/beta chain family FH2 PF02181.18 gi|305662487|ref|YP_003858775.1| - 0.00012 21.0 0.4 0.22 10.3 0.2 2.4 1 1 1 2 2 2 2 Formin Homology 2 Domain HSBP1 PF06825.7 gi|305662487|ref|YP_003858775.1| - 0.00013 21.4 0.0 3 7.4 0.0 5.1 2 2 1 3 3 2 0 Heat shock factor binding protein 1 Syntaxin-6_N PF09177.6 gi|305662487|ref|YP_003858775.1| - 0.00015 22.0 7.8 1.4 9.3 0.2 4.2 1 1 3 4 4 4 0 Syntaxin 6, N-terminal MCPsignal PF00015.16 gi|305662487|ref|YP_003858775.1| - 0.00017 21.2 28.0 0.058 12.9 7.4 3.5 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Atg14 PF10186.4 gi|305662487|ref|YP_003858775.1| - 0.00018 20.5 0.3 0.001 18.0 0.2 1.9 1 1 1 2 2 2 1 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin_2 PF01920.15 gi|305662487|ref|YP_003858775.1| - 0.00021 21.0 0.1 2.1 8.1 0.1 4.2 2 2 2 4 4 4 0 Prefoldin subunit Snapin_Pallidin PF14712.1 gi|305662487|ref|YP_003858775.1| - 0.00022 21.4 3.4 0.25 11.6 0.1 3.6 1 1 3 4 4 4 1 Snapin/Pallidin CENP-F_leu_zip PF10473.4 gi|305662487|ref|YP_003858775.1| - 0.00027 20.7 0.1 0.024 14.4 0.1 2.7 1 1 2 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PTRF_SDPR PF15237.1 gi|305662487|ref|YP_003858775.1| - 0.00029 20.3 7.3 0.014 14.8 1.0 2.4 1 1 2 3 3 3 1 PTRF/SDPR family CALCOCO1 PF07888.6 gi|305662487|ref|YP_003858775.1| - 0.00029 19.2 0.6 0.35 9.1 0.1 2.3 1 1 1 2 2 2 2 Calcium binding and coiled-coil domain (CALCOCO1) like Cortex-I_coil PF09304.5 gi|305662487|ref|YP_003858775.1| - 0.00037 20.5 2.5 0.092 12.7 0.8 2.7 2 1 1 3 3 3 1 Cortexillin I, coiled coil DUF677 PF05055.7 gi|305662487|ref|YP_003858775.1| - 0.00037 19.2 23.3 0.032 12.8 3.8 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF677) LPP PF04728.8 gi|305662487|ref|YP_003858775.1| - 0.00041 20.0 47.5 0.28 10.9 0.4 7.6 1 1 7 8 8 7 1 Lipoprotein leucine-zipper AIP3 PF03915.8 gi|305662487|ref|YP_003858775.1| - 0.00052 19.0 11.3 0.00075 18.5 7.9 1.2 1 0 0 1 1 1 1 Actin interacting protein 3 Tektin PF03148.9 gi|305662487|ref|YP_003858775.1| - 0.00055 18.6 0.9 0.031 12.8 0.5 2.6 1 1 1 2 2 2 1 Tektin family ALIX_LYPXL_bnd PF13949.1 gi|305662487|ref|YP_003858775.1| - 0.00073 18.5 1.9 0.0067 15.4 1.3 2.0 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV Sipho_Gp157 PF05565.6 gi|305662487|ref|YP_003858775.1| - 0.00083 18.9 4.7 2.2 7.8 0.0 3.3 1 1 2 3 3 3 0 Siphovirus Gp157 Cast PF10174.4 gi|305662487|ref|YP_003858775.1| - 0.001 17.2 0.3 0.012 13.7 0.1 1.7 1 1 1 2 2 2 1 RIM-binding protein of the cytomatrix active zone Med9 PF07544.8 gi|305662487|ref|YP_003858775.1| - 0.0011 18.6 2.0 0.017 14.8 0.3 3.0 3 1 0 3 3 2 1 RNA polymerase II transcription mediator complex subunit 9 Mnd1 PF03962.10 gi|305662487|ref|YP_003858775.1| - 0.0013 18.4 0.5 0.1 12.2 0.4 2.3 1 1 0 2 2 2 1 Mnd1 family APG6 PF04111.7 gi|305662487|ref|YP_003858775.1| - 0.0013 17.8 0.0 0.0053 15.8 0.0 1.8 1 1 1 2 2 2 1 Autophagy protein Apg6 DUF2884 PF11101.3 gi|305662487|ref|YP_003858775.1| - 0.0013 18.1 2.2 0.0051 16.2 0.8 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2884) DUF2730 PF10805.3 gi|305662487|ref|YP_003858775.1| - 0.0014 18.3 1.4 4 7.2 0.1 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF2730) HAUS-augmin3 PF14932.1 gi|305662487|ref|YP_003858775.1| - 0.0014 17.8 0.8 0.037 13.2 0.6 2.1 2 0 0 2 2 2 1 HAUS augmin-like complex subunit 3 Ran-binding PF05508.6 gi|305662487|ref|YP_003858775.1| - 0.0017 17.3 11.6 0.032 13.1 0.2 2.2 1 1 1 2 2 2 1 RanGTP-binding protein Hormone_1 PF00103.15 gi|305662487|ref|YP_003858775.1| - 0.0018 17.6 4.7 2 7.6 0.0 3.5 1 1 4 5 5 5 0 Somatotropin hormone family DivIC PF04977.10 gi|305662487|ref|YP_003858775.1| - 0.0019 17.6 2.5 0.19 11.2 0.2 3.6 2 1 3 5 5 3 1 Septum formation initiator GLE1 PF07817.8 gi|305662487|ref|YP_003858775.1| - 0.002 17.1 5.3 0.002 17.0 0.3 2.7 1 1 3 4 4 4 1 GLE1-like protein Fmp27_WPPW PF10359.4 gi|305662487|ref|YP_003858775.1| - 0.0021 16.5 1.2 0.0059 15.0 0.8 1.9 1 1 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain COG5 PF10392.4 gi|305662487|ref|YP_003858775.1| - 0.0022 17.9 6.5 1.3 9.0 0.4 3.9 1 1 3 4 4 4 0 Golgi transport complex subunit 5 DUF4164 PF13747.1 gi|305662487|ref|YP_003858775.1| - 0.0024 17.9 3.2 2 8.5 1.5 3.7 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) DUF869 PF05911.6 gi|305662487|ref|YP_003858775.1| - 0.0027 16.0 8.5 0.017 13.3 6.0 1.7 1 1 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF745 PF05335.8 gi|305662487|ref|YP_003858775.1| - 0.0027 17.2 8.9 0.0057 16.1 2.9 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF745) Lebercilin PF15619.1 gi|305662487|ref|YP_003858775.1| - 0.0027 17.1 0.0 0.03 13.7 0.0 2.1 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease Nup88 PF10168.4 gi|305662487|ref|YP_003858775.1| - 0.0031 15.4 1.9 0.72 7.6 0.0 2.5 1 1 2 3 3 3 1 Nuclear pore component MIS13 PF08202.6 gi|305662487|ref|YP_003858775.1| - 0.0033 16.5 7.9 0.021 13.8 2.4 2.8 1 1 1 2 2 2 1 Mis12-Mtw1 protein family Cna_B PF05738.8 gi|305662487|ref|YP_003858775.1| - 0.0037 17.0 2.7 0.77 9.5 0.0 3.0 2 0 0 2 2 2 1 Cna protein B-type domain TPR_MLP1_2 PF07926.7 gi|305662487|ref|YP_003858775.1| - 0.004 16.8 1.0 0.34 10.6 0.5 2.9 1 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein Apolipoprotein PF01442.13 gi|305662487|ref|YP_003858775.1| - 0.0042 16.6 0.0 0.02 14.3 0.0 2.1 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain TMPIT PF07851.8 gi|305662487|ref|YP_003858775.1| - 0.0045 16.1 2.0 0.043 12.8 0.6 2.2 1 1 1 2 2 2 1 TMPIT-like protein DUF2580 PF10824.3 gi|305662487|ref|YP_003858775.1| - 0.0046 17.2 7.2 2.6 8.4 0.4 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF2580) Transposase_22 PF02994.9 gi|305662487|ref|YP_003858775.1| - 0.0052 15.3 5.6 0.018 13.5 2.1 2.1 1 1 1 2 2 2 1 L1 transposable element DUF3450 PF11932.3 gi|305662487|ref|YP_003858775.1| - 0.0053 16.0 1.4 0.48 9.6 0.7 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) Vps5 PF09325.5 gi|305662487|ref|YP_003858775.1| - 0.0054 16.0 4.4 2.1 7.5 0.4 2.9 1 1 2 3 3 3 0 Vps5 C terminal like Vps51 PF08700.6 gi|305662487|ref|YP_003858775.1| - 0.0055 16.5 7.5 5.2 6.9 0.2 5.0 1 1 0 3 3 3 0 Vps51/Vps67 DUF16 PF01519.11 gi|305662487|ref|YP_003858775.1| - 0.0061 16.7 4.6 0.98 9.6 0.0 3.7 1 1 2 3 3 3 0 Protein of unknown function DUF16 MAD PF05557.8 gi|305662487|ref|YP_003858775.1| - 0.0063 14.6 0.6 0.013 13.6 0.3 1.4 1 1 0 1 1 1 1 Mitotic checkpoint protein MscS_porin PF12795.2 gi|305662487|ref|YP_003858775.1| - 0.0073 15.6 0.5 0.019 14.2 0.3 1.6 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain APG17 PF04108.7 gi|305662487|ref|YP_003858775.1| - 0.0078 15.0 7.7 0.57 8.9 2.9 2.9 1 1 1 2 2 2 2 Autophagy protein Apg17 Sec3_C PF09763.4 gi|305662487|ref|YP_003858775.1| - 0.0079 14.3 5.4 0.26 9.3 0.7 2.9 1 1 2 3 3 3 1 Exocyst complex component Sec3 STAT_alpha PF01017.15 gi|305662487|ref|YP_003858775.1| - 0.0085 15.8 1.4 0.14 11.8 0.4 2.6 1 1 0 2 2 2 1 STAT protein, all-alpha domain BicD PF09730.4 gi|305662487|ref|YP_003858775.1| - 0.0092 14.3 3.2 0.48 8.7 0.9 2.0 1 1 1 2 2 2 2 Microtubule-associated protein Bicaudal-D TrbL PF04610.9 gi|305662487|ref|YP_003858775.1| - 0.012 15.3 3.3 0.012 15.3 2.3 3.7 2 1 2 4 4 3 0 TrbL/VirB6 plasmid conjugal transfer protein DegS PF05384.6 gi|305662487|ref|YP_003858775.1| - 0.015 14.5 3.3 0.49 9.6 1.4 3.4 1 1 1 2 2 2 0 Sensor protein DegS IncA PF04156.9 gi|305662487|ref|YP_003858775.1| - 0.015 14.9 9.3 0.27 10.8 0.0 4.1 3 1 2 5 5 3 0 IncA protein CCDC144C PF14915.1 gi|305662487|ref|YP_003858775.1| - 0.015 14.1 0.1 0.032 13.1 0.1 1.4 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Syntaxin_2 PF14523.1 gi|305662487|ref|YP_003858775.1| - 0.016 15.2 13.1 0.61 10.1 2.0 3.7 1 1 1 2 2 2 0 Syntaxin-like protein CorA PF01544.13 gi|305662487|ref|YP_003858775.1| - 0.017 14.1 3.1 0.018 14.1 0.6 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein LXG PF04740.7 gi|305662487|ref|YP_003858775.1| - 0.019 14.7 10.1 1.2 8.8 3.8 3.2 1 1 1 2 2 2 0 LXG domain of WXG superfamily CCDC155 PF14662.1 gi|305662487|ref|YP_003858775.1| - 0.022 14.3 0.5 0.1 12.1 0.3 1.5 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 ORF6C PF10552.4 gi|305662487|ref|YP_003858775.1| - 0.023 14.4 6.9 0.55 9.9 0.1 3.4 2 2 1 3 3 3 0 ORF6C domain DUF2205 PF10224.4 gi|305662487|ref|YP_003858775.1| - 0.023 14.2 4.2 2.4 7.8 0.1 4.4 2 2 3 5 5 4 0 Predicted coiled-coil protein (DUF2205) Med4 PF10018.4 gi|305662487|ref|YP_003858775.1| - 0.023 14.0 1.1 1.6 8.0 0.2 3.0 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 Phage_GPO PF05929.6 gi|305662487|ref|YP_003858775.1| - 0.03 13.5 7.3 1.1 8.5 0.2 2.5 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Packaging_FI PF14000.1 gi|305662487|ref|YP_003858775.1| - 0.031 14.4 3.5 0.065 13.4 0.4 2.4 2 0 0 2 2 2 0 DNA packaging protein FI Arfaptin PF06456.8 gi|305662487|ref|YP_003858775.1| - 0.032 13.5 1.3 1.1 8.5 0.2 2.3 1 1 1 2 2 2 0 Arfaptin-like domain DUF2130 PF09903.4 gi|305662487|ref|YP_003858775.1| - 0.033 12.9 8.9 0.89 8.2 0.2 3.1 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) PilJ PF13675.1 gi|305662487|ref|YP_003858775.1| - 0.034 14.4 0.1 0.91 9.8 0.0 2.8 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term XhlA PF10779.4 gi|305662487|ref|YP_003858775.1| - 0.034 14.0 8.8 0.11 12.4 0.3 3.8 4 1 0 4 4 2 0 Haemolysin XhlA Prefoldin_3 PF13758.1 gi|305662487|ref|YP_003858775.1| - 0.035 13.8 5.8 1.6 8.5 0.9 4.1 1 1 2 3 3 3 0 Prefoldin subunit Vps53_N PF04100.7 gi|305662487|ref|YP_003858775.1| - 0.036 12.8 15.1 0.13 10.9 3.7 2.3 1 1 1 2 2 2 0 Vps53-like, N-terminal Serine_rich PF08824.5 gi|305662487|ref|YP_003858775.1| - 0.036 13.7 4.3 0.45 10.2 0.6 2.9 1 1 2 3 3 3 0 Serine rich protein interaction domain BRE1 PF08647.6 gi|305662487|ref|YP_003858775.1| - 0.04 13.8 4.2 0.13 12.2 1.3 2.3 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase MitMem_reg PF13012.1 gi|305662487|ref|YP_003858775.1| - 0.041 13.9 7.9 26 4.9 4.0 3.6 1 1 2 3 3 3 0 Maintenance of mitochondrial structure and function DUF3086 PF11285.3 gi|305662487|ref|YP_003858775.1| - 0.042 12.6 1.7 0.12 11.1 0.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3086) UPF0184 PF03670.8 gi|305662487|ref|YP_003858775.1| - 0.042 14.0 12.4 1.7 8.9 0.0 4.8 1 1 5 6 6 5 0 Uncharacterised protein family (UPF0184) SNARE PF05739.14 gi|305662487|ref|YP_003858775.1| - 0.047 13.3 15.3 6 6.6 0.2 4.9 2 2 3 5 5 5 0 SNARE domain Nsp1_C PF05064.8 gi|305662487|ref|YP_003858775.1| - 0.061 12.9 1.1 1.6 8.4 0.4 2.8 1 1 0 2 2 2 0 Nsp1-like C-terminal region Spectrin PF00435.16 gi|305662487|ref|YP_003858775.1| - 0.063 13.5 0.0 0.88 9.8 0.0 2.5 1 1 2 3 3 2 0 Spectrin repeat GrpE PF01025.14 gi|305662487|ref|YP_003858775.1| - 0.065 12.7 1.5 0.13 11.7 0.8 1.6 1 1 1 2 2 1 0 GrpE Filo_VP35 PF02097.10 gi|305662487|ref|YP_003858775.1| - 0.07 12.3 14.0 1.7 7.7 4.7 3.1 1 1 1 2 2 2 0 Filoviridae VP35 HOOK PF05622.7 gi|305662487|ref|YP_003858775.1| - 0.074 10.8 0.3 0.34 8.6 0.2 1.7 1 1 1 2 2 2 0 HOOK protein DivIVA PF05103.8 gi|305662487|ref|YP_003858775.1| - 0.077 13.0 5.3 0.77 9.8 2.0 2.9 1 1 2 3 3 3 0 DivIVA protein Mod_r PF07200.8 gi|305662487|ref|YP_003858775.1| - 0.083 12.8 0.2 0.88 9.4 0.1 2.2 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DASH_Spc19 PF08287.6 gi|305662487|ref|YP_003858775.1| - 0.1 12.2 3.4 5.6 6.5 0.2 3.5 2 2 1 3 3 3 0 Spc19 DUF4618 PF15397.1 gi|305662487|ref|YP_003858775.1| - 0.11 11.8 3.6 1.8 7.8 1.1 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Kinetocho_Slk19 PF12709.2 gi|305662487|ref|YP_003858775.1| - 0.11 12.5 0.2 43 4.2 0.1 3.6 2 1 2 4 4 2 0 Central kinetochore-associated ApoC-I PF04691.7 gi|305662487|ref|YP_003858775.1| - 0.12 12.1 0.2 21 4.8 0.0 3.3 3 0 0 3 3 2 0 Apolipoprotein C-I (ApoC-1) DUF1515 PF07439.6 gi|305662487|ref|YP_003858775.1| - 0.13 12.0 8.0 0.14 11.9 0.9 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1515) DUF4455 PF14643.1 gi|305662487|ref|YP_003858775.1| - 0.15 10.6 2.0 0.76 8.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4455) DUF1202 PF06717.6 gi|305662487|ref|YP_003858775.1| - 0.15 11.2 17.2 0.098 11.9 1.8 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1202) Cluap1 PF10234.4 gi|305662487|ref|YP_003858775.1| - 0.16 11.1 6.9 5.7 6.0 0.1 2.9 1 1 1 3 3 3 0 Clusterin-associated protein-1 COG6 PF06419.6 gi|305662487|ref|YP_003858775.1| - 0.17 9.9 10.1 0.83 7.7 0.8 3.4 1 1 4 5 5 5 0 Conserved oligomeric complex COG6 Striatin PF08232.7 gi|305662487|ref|YP_003858775.1| - 0.17 12.1 1.0 1.1 9.5 0.7 2.3 1 1 0 1 1 1 0 Striatin family bZIP_1 PF00170.16 gi|305662487|ref|YP_003858775.1| - 0.18 11.8 1.2 2.9 7.9 0.2 2.9 3 1 0 3 3 2 0 bZIP transcription factor LIF_OSM PF01291.12 gi|305662487|ref|YP_003858775.1| - 0.18 11.7 3.7 7.2 6.5 0.0 2.8 1 1 2 3 3 3 0 LIF / OSM family TMP_2 PF06791.8 gi|305662487|ref|YP_003858775.1| - 0.2 11.2 19.9 0.06 12.9 6.6 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein ATG_C PF09333.6 gi|305662487|ref|YP_003858775.1| - 0.2 11.7 8.4 0.32 11.1 0.3 3.6 1 1 3 4 4 4 0 ATG C terminal domain Ax_dynein_light PF10211.4 gi|305662487|ref|YP_003858775.1| - 0.2 11.4 0.3 8.9 6.1 0.2 2.7 2 1 1 3 3 3 0 Axonemal dynein light chain YjcZ PF13990.1 gi|305662487|ref|YP_003858775.1| - 0.21 10.6 1.5 5.2 6.1 0.3 2.6 1 1 1 2 2 2 0 YjcZ-like protein Vac_Fusion PF02346.11 gi|305662487|ref|YP_003858775.1| - 0.22 10.9 1.1 39 3.7 0.0 3.4 2 2 2 4 4 3 0 Chordopoxvirus fusion protein Spc24 PF08286.6 gi|305662487|ref|YP_003858775.1| - 0.31 10.7 6.5 1.4 8.6 0.3 3.5 1 1 1 3 3 3 0 Spc24 subunit of Ndc80 IL6 PF00489.12 gi|305662487|ref|YP_003858775.1| - 0.31 10.6 1.7 20 4.7 0.1 3.1 2 1 1 3 3 3 0 Interleukin-6/G-CSF/MGF family HsbA PF12296.3 gi|305662487|ref|YP_003858775.1| - 0.32 10.8 36.6 2.2 8.1 2.9 5.4 2 1 3 6 6 5 0 Hydrophobic surface binding protein A Corona_S2 PF01601.11 gi|305662487|ref|YP_003858775.1| - 0.32 9.0 21.2 0.92 7.5 7.2 3.5 1 1 3 4 4 4 0 Coronavirus S2 glycoprotein CAP_N PF01213.14 gi|305662487|ref|YP_003858775.1| - 0.33 10.1 8.4 0.092 12.0 0.3 2.3 1 1 1 2 2 2 0 Adenylate cyclase associated (CAP) N terminal PMEI PF04043.10 gi|305662487|ref|YP_003858775.1| - 0.34 10.8 13.7 1.3 8.9 2.3 2.5 1 1 1 2 2 2 0 Plant invertase/pectin methylesterase inhibitor DASH_Dad2 PF08654.5 gi|305662487|ref|YP_003858775.1| - 0.34 10.9 15.2 2.5 8.1 1.6 3.9 1 1 2 4 4 4 0 DASH complex subunit Dad2 DASH_Dad3 PF08656.5 gi|305662487|ref|YP_003858775.1| - 0.42 10.3 5.7 3.8 7.2 0.1 4.1 1 1 2 3 3 3 0 DASH complex subunit Dad3 DUF4559 PF15112.1 gi|305662487|ref|YP_003858775.1| - 0.5 9.4 4.7 0.73 8.9 1.4 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4559) DUF2570 PF10828.3 gi|305662487|ref|YP_003858775.1| - 0.69 9.5 4.6 1.1 8.8 1.2 2.6 2 2 0 2 2 2 0 Protein of unknown function (DUF2570) DUF2959 PF11172.3 gi|305662487|ref|YP_003858775.1| - 0.81 9.4 9.3 3.9 7.1 3.0 3.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2959) Tweety PF04906.8 gi|305662487|ref|YP_003858775.1| - 0.89 7.9 11.1 2.4 6.4 1.7 2.8 1 1 2 3 3 3 0 Tweety DUF148 PF02520.12 gi|305662487|ref|YP_003858775.1| - 0.9 9.3 13.5 1.5 8.6 0.1 3.9 1 1 3 4 4 4 0 Domain of unknown function DUF148 DUF1395 PF07160.7 gi|305662487|ref|YP_003858775.1| - 0.92 8.9 6.1 3 7.2 1.7 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF1395) BDV_P24 PF06595.6 gi|305662487|ref|YP_003858775.1| - 1.1 8.9 5.6 0.8 9.4 1.7 2.3 1 1 1 2 2 1 0 Borna disease virus P24 protein Vps52 PF04129.7 gi|305662487|ref|YP_003858775.1| - 1.2 7.5 13.4 2.4 6.6 5.2 2.4 1 1 1 2 2 2 0 Vps52 / Sac2 family Flagellin_C PF00700.16 gi|305662487|ref|YP_003858775.1| - 1.7 8.8 21.0 3.2 7.9 0.1 4.8 1 1 4 5 5 5 0 Bacterial flagellin C-terminal helical region DUF2450 PF10475.4 gi|305662487|ref|YP_003858775.1| - 1.8 7.4 5.2 12 4.6 1.1 2.4 1 1 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) YlbD_coat PF14071.1 gi|305662487|ref|YP_003858775.1| - 1.9 8.5 9.4 6.7 6.7 1.0 3.7 1 1 3 4 4 4 0 Putative coat protein Hemagglutinin PF00509.13 gi|305662487|ref|YP_003858775.1| - 2 6.4 16.7 4.3 5.3 0.1 3.7 1 1 2 3 3 3 0 Haemagglutinin DASH_Duo1 PF08651.5 gi|305662487|ref|YP_003858775.1| - 2.5 7.7 14.9 8.1 6.0 1.0 4.6 1 1 3 5 5 5 0 DASH complex subunit Duo1 T4SS PF07996.6 gi|305662487|ref|YP_003858775.1| - 2.8 7.7 7.7 1.4 8.7 2.7 2.1 1 1 1 2 2 2 0 Type IV secretion system proteins Adeno_PIX PF03955.9 gi|305662487|ref|YP_003858775.1| - 3.5 8.1 8.4 17 6.0 0.2 4.0 1 1 4 5 5 4 0 Adenovirus hexon-associated protein (IX) FlxA PF14282.1 gi|305662487|ref|YP_003858775.1| - 4 7.4 12.1 13 5.7 0.3 4.3 2 2 1 4 4 4 0 FlxA-like protein Sugarporin_N PF11471.3 gi|305662487|ref|YP_003858775.1| - 4.3 7.0 8.7 20 4.9 0.0 3.5 4 0 0 4 4 3 0 Maltoporin periplasmic N-terminal extension Phage_Gp23 PF10669.4 gi|305662487|ref|YP_003858775.1| - 4.5 7.4 7.1 21 5.2 0.1 3.8 1 1 1 4 4 3 0 Protein gp23 (Bacteriophage A118) DUF3407 PF11887.3 gi|305662487|ref|YP_003858775.1| - 9 5.4 14.4 11 5.2 4.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3407) FKBP_C PF00254.23 gi|305662488|ref|YP_003858776.1| - 2.2e-11 43.6 0.3 5e-11 42.4 0.1 1.7 2 0 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase Fe-ADH_2 PF13685.1 gi|305662489|ref|YP_003858777.1| - 7.8e-65 218.6 0.5 1.1e-64 218.2 0.4 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|305662489|ref|YP_003858777.1| - 5.6e-29 100.9 0.9 9.6e-29 100.1 0.6 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|305662489|ref|YP_003858777.1| - 8.1e-13 47.8 0.7 2.2e-08 33.3 0.0 2.9 2 1 0 2 2 2 2 3-dehydroquinate synthase Proteasome PF00227.21 gi|305662490|ref|YP_003858778.1| - 3.4e-51 173.2 1.5 4e-51 172.9 1.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Polysacc_synt_2 PF02719.10 gi|305662490|ref|YP_003858778.1| - 0.03 13.2 0.2 0.069 12.0 0.0 1.6 2 0 0 2 2 2 0 Polysaccharide biosynthesis protein DNA_mis_repair PF01119.14 gi|305662490|ref|YP_003858778.1| - 0.066 12.6 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 DNA mismatch repair protein, C-terminal domain Beta-Casp PF10996.3 gi|305662491|ref|YP_003858779.1| - 1.2e-33 115.7 0.0 5e-33 113.7 0.0 2.0 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B PF00753.22 gi|305662491|ref|YP_003858779.1| - 1.8e-25 89.7 1.0 3.3e-25 88.8 0.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|305662491|ref|YP_003858779.1| - 2.1e-14 53.0 0.2 1.3e-13 50.5 0.1 2.4 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|305662491|ref|YP_003858779.1| - 1.9e-10 40.6 0.5 5.4e-10 39.1 0.1 1.9 3 0 0 3 3 3 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|305662491|ref|YP_003858779.1| - 0.00026 20.7 0.0 0.00069 19.3 0.0 1.7 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF357 PF04010.8 gi|305662492|ref|YP_003858780.1| - 1e-18 66.7 0.8 1.9e-18 65.9 0.6 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF357) CTP_transf_2 PF01467.21 gi|305662492|ref|YP_003858780.1| - 9.3e-13 48.5 0.0 2.7e-12 47.0 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase DUF867 PF05908.6 gi|305662492|ref|YP_003858780.1| - 0.044 12.8 0.0 0.057 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF867) TP_methylase PF00590.15 gi|305662493|ref|YP_003858781.1| - 1.8e-10 40.9 0.0 2.3e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases XPA_N PF01286.13 gi|305662493|ref|YP_003858781.1| - 0.14 11.8 1.1 0.18 11.5 0.1 1.6 2 0 0 2 2 2 0 XPA protein N-terminal HD PF01966.17 gi|305662494|ref|YP_003858782.1| - 5.3e-14 52.2 0.0 1.3e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 HD domain HDOD PF08668.7 gi|305662494|ref|YP_003858782.1| - 0.13 11.5 0.0 0.29 10.3 0.0 1.5 1 1 0 1 1 1 0 HDOD domain Rib_5-P_isom_A PF06026.9 gi|305662496|ref|YP_003858784.1| - 3.6e-46 156.6 0.0 4.2e-46 156.4 0.0 1.0 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DUF367 PF04034.8 gi|305662498|ref|YP_003858786.1| - 1.6e-39 134.3 0.1 2e-39 134.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|305662498|ref|YP_003858786.1| - 0.00034 20.1 0.0 0.00066 19.2 0.0 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AsnC_trans_reg PF01037.16 gi|305662499|ref|YP_003858787.1| - 6.2e-16 57.8 0.6 7e-16 57.6 0.4 1.0 1 0 0 1 1 1 1 AsnC family ACT_4 PF13291.1 gi|305662499|ref|YP_003858787.1| - 0.015 15.6 0.1 3.9 7.8 0.0 2.2 2 0 0 2 2 2 0 ACT domain DUF1743 PF08489.6 gi|305662500|ref|YP_003858788.1| - 4.7e-33 113.4 0.0 8.7e-33 112.5 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|305662500|ref|YP_003858788.1| - 8.3e-05 22.3 0.0 0.00019 21.1 0.0 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain OrfB_Zn_ribbon PF07282.6 gi|305662500|ref|YP_003858788.1| - 0.011 15.3 2.4 0.072 12.7 0.6 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|305662500|ref|YP_003858788.1| - 0.03 14.0 2.5 0.061 13.0 1.8 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|305662500|ref|YP_003858788.1| - 0.11 12.3 0.7 0.2 11.4 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|305662500|ref|YP_003858788.1| - 0.32 10.8 4.2 0.64 9.8 2.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|305662500|ref|YP_003858788.1| - 1.2 9.5 4.4 18 5.8 0.1 2.6 2 0 0 2 2 2 0 Zinc-finger double domain Rep_fac-A_C PF08646.5 gi|305662500|ref|YP_003858788.1| - 1.3 8.7 4.3 3.1 7.4 2.8 1.7 2 0 0 2 2 2 0 Replication factor-A C terminal domain DUF1610 PF07754.6 gi|305662500|ref|YP_003858788.1| - 2.3 8.4 7.3 1.7 8.8 2.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|305662500|ref|YP_003858788.1| - 5.7 6.8 7.7 13 5.6 5.3 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Sec61_beta PF03911.11 gi|305662501|ref|YP_003858789.1| - 1.3e-07 31.2 1.9 1.5e-07 31.0 1.3 1.1 1 0 0 1 1 1 1 Sec61beta family S1FA PF04689.8 gi|305662501|ref|YP_003858789.1| - 0.13 12.1 0.2 0.2 11.5 0.1 1.3 1 0 0 1 1 1 0 DNA binding protein S1FA SWIM PF04434.12 gi|305662502|ref|YP_003858790.1| - 0.0048 16.3 0.6 0.0085 15.5 0.4 1.4 1 0 0 1 1 1 1 SWIM zinc finger PcrB PF01884.12 gi|305662503|ref|YP_003858791.1| - 2.7e-65 219.8 1.4 3.3e-65 219.5 1.0 1.0 1 0 0 1 1 1 1 PcrB family DHO_dh PF01180.16 gi|305662503|ref|YP_003858791.1| - 1.7e-05 23.9 0.1 2.9e-05 23.1 0.1 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|305662503|ref|YP_003858791.1| - 9.3e-05 21.7 0.1 0.0003 20.1 0.1 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein MTD PF01993.13 gi|305662503|ref|YP_003858791.1| - 0.0035 16.4 0.2 0.047 12.7 0.0 2.1 2 0 0 2 2 2 1 methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase Ribul_P_3_epim PF00834.14 gi|305662503|ref|YP_003858791.1| - 0.0047 16.0 0.4 0.012 14.7 0.2 1.7 2 0 0 2 2 2 1 Ribulose-phosphate 3 epimerase family DUF4350 PF14258.1 gi|305662503|ref|YP_003858791.1| - 0.037 14.2 0.1 10 6.4 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4350) Trp_syntA PF00290.15 gi|305662503|ref|YP_003858791.1| - 0.04 12.4 0.5 0.11 11.0 0.1 1.8 2 0 0 2 2 2 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|305662503|ref|YP_003858791.1| - 0.065 12.1 0.1 0.37 9.6 0.0 1.9 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain QRPTase_C PF01729.14 gi|305662503|ref|YP_003858791.1| - 0.086 12.3 0.0 2.6 7.5 0.1 2.3 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain CutC PF03932.9 gi|305662503|ref|YP_003858791.1| - 0.088 12.0 0.5 1.6 7.9 0.0 2.2 2 0 0 2 2 2 0 CutC family Pyr_redox_2 PF07992.9 gi|305662503|ref|YP_003858791.1| - 0.11 12.4 0.9 10 5.9 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|305662503|ref|YP_003858791.1| - 0.19 12.1 1.3 0.64 10.4 0.6 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|305662503|ref|YP_003858791.1| - 0.44 9.3 2.3 0.7 8.7 0.8 1.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase IF-2B PF01008.12 gi|305662504|ref|YP_003858792.1| - 1.2e-93 313.1 1.3 1.4e-93 312.9 0.9 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Hydrolase PF00702.21 gi|305662504|ref|YP_003858792.1| - 0.034 14.5 0.7 0.11 12.8 0.5 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase tRNA_int_endo PF01974.12 gi|305662505|ref|YP_003858793.1| - 0.0074 16.0 0.2 0.02 14.6 0.1 1.8 1 1 1 2 2 2 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA-synt_His PF13393.1 gi|305662506|ref|YP_003858794.1| - 6.1e-66 222.5 0.0 7.9e-66 222.2 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|305662506|ref|YP_003858794.1| - 1e-23 83.8 0.8 1.8e-23 82.9 0.3 1.5 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|305662506|ref|YP_003858794.1| - 2.3e-12 46.6 0.3 4.9e-12 45.6 0.2 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|305662506|ref|YP_003858794.1| - 1.3e-08 34.3 0.1 4.7e-08 32.5 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|305662506|ref|YP_003858794.1| - 0.0059 15.4 1.3 0.35 9.5 0.6 2.9 2 1 0 2 2 2 1 tRNA synthetases class II (D, K and N) Ins_allergen_rp PF06757.8 gi|305662506|ref|YP_003858794.1| - 0.071 12.5 0.6 0.36 10.2 0.1 2.1 2 0 0 2 2 2 0 Insect allergen related repeat, nitrile-specifier detoxification DS PF01916.12 gi|305662507|ref|YP_003858795.1| - 1.9e-85 286.6 0.3 2.2e-85 286.4 0.2 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Topo-VIb_trans PF09239.6 gi|305662508|ref|YP_003858796.1| - 8.8e-61 204.1 0.1 1.6e-60 203.2 0.1 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|305662508|ref|YP_003858796.1| - 6.2e-14 51.6 0.0 4.2e-13 48.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|305662508|ref|YP_003858796.1| - 4.2e-11 42.6 0.0 7.9e-11 41.7 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.6 gi|305662508|ref|YP_003858796.1| - 6.6e-07 28.2 0.0 1.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) H2TH PF06831.9 gi|305662508|ref|YP_003858796.1| - 0.0024 17.5 0.0 0.0065 16.1 0.0 1.7 1 0 0 1 1 1 1 Formamidopyrimidine-DNA glycosylase H2TH domain Hom_end PF05204.9 gi|305662508|ref|YP_003858796.1| - 0.023 14.6 0.1 0.045 13.7 0.0 1.4 1 0 0 1 1 1 0 Homing endonuclease Ribosomal_S13 PF00416.17 gi|305662508|ref|YP_003858796.1| - 0.14 12.6 0.0 0.41 11.1 0.0 1.8 1 0 0 1 1 1 0 Ribosomal protein S13/S18 TP6A_N PF04406.9 gi|305662509|ref|YP_003858797.1| - 1.6e-23 82.1 0.8 2.8e-23 81.3 0.6 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase HAD_2 PF13419.1 gi|305662509|ref|YP_003858797.1| - 0.025 14.8 0.1 0.1 12.7 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF2399 PF09664.5 gi|305662509|ref|YP_003858797.1| - 0.034 14.0 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) Vac_Fusion PF02346.11 gi|305662509|ref|YP_003858797.1| - 0.14 11.6 1.5 0.7 9.3 0.1 2.5 2 0 0 2 2 2 0 Chordopoxvirus fusion protein DUF2204 PF09970.4 gi|305662510|ref|YP_003858798.1| - 9.5e-45 152.2 0.6 1.1e-44 152.1 0.4 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) AP_endonuc_2 PF01261.19 gi|305662510|ref|YP_003858798.1| - 0.00041 19.6 0.0 0.00055 19.2 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel DUF3219 PF11514.3 gi|305662510|ref|YP_003858798.1| - 0.094 12.6 0.1 7.4 6.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3219) NTP_transf_2 PF01909.18 gi|305662510|ref|YP_003858798.1| - 0.15 12.4 2.1 1 9.6 0.0 2.5 1 1 1 2 2 2 0 Nucleotidyltransferase domain Ribosomal_L40e PF01020.12 gi|305662511|ref|YP_003858799.1| - 1.7e-08 33.9 4.3 2.1e-08 33.6 3.0 1.2 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|305662511|ref|YP_003858799.1| - 6.5e-05 22.2 0.9 8.2e-05 21.9 0.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|305662511|ref|YP_003858799.1| - 0.00064 19.4 1.0 0.00078 19.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662511|ref|YP_003858799.1| - 0.00092 18.3 2.7 0.0012 17.9 1.9 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DUF35_N PF12172.3 gi|305662511|ref|YP_003858799.1| - 0.001 18.8 2.9 0.0013 18.5 2.0 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-RanBP PF00641.13 gi|305662511|ref|YP_003858799.1| - 0.017 14.1 4.4 0.024 13.7 3.0 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others zf-DHHC PF01529.15 gi|305662511|ref|YP_003858799.1| - 0.066 12.5 0.5 0.067 12.5 0.3 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase zf-MYND PF01753.13 gi|305662511|ref|YP_003858799.1| - 0.24 11.3 3.3 0.31 10.9 2.3 1.2 1 0 0 1 1 1 0 MYND finger RNA_POL_M_15KD PF02150.11 gi|305662511|ref|YP_003858799.1| - 0.73 9.5 0.2 0.73 9.5 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-dskA_traR PF01258.12 gi|305662511|ref|YP_003858799.1| - 1.2 8.9 5.7 6.7 6.5 0.4 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Ribosomal_L37e PF01907.14 gi|305662511|ref|YP_003858799.1| - 5.3 6.9 7.2 9.3 6.1 2.6 2.0 1 1 1 2 2 2 0 Ribosomal protein L37e KH_5 PF13184.1 gi|305662512|ref|YP_003858800.1| - 7.5e-09 35.2 0.0 1.4e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 NusA-like KH domain SPK PF04435.13 gi|305662512|ref|YP_003858800.1| - 0.054 13.4 0.1 0.082 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF545) tRNA-synt_2 PF00152.15 gi|305662513|ref|YP_003858801.1| - 2e-87 293.0 0.1 3.3e-87 292.4 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|305662513|ref|YP_003858801.1| - 1.1e-15 57.1 0.8 2.1e-15 56.3 0.6 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|305662513|ref|YP_003858801.1| - 0.002 17.3 0.0 0.9 8.6 0.0 3.0 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|305662513|ref|YP_003858801.1| - 0.057 12.9 0.1 0.17 11.4 0.0 1.6 1 1 1 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) PTH2 PF01981.11 gi|305662514|ref|YP_003858802.1| - 8.3e-43 144.7 0.1 9.2e-43 144.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DUF1610 PF07754.6 gi|305662515|ref|YP_003858803.1| - 5e-11 42.4 19.3 1.5e-08 34.5 3.4 2.8 2 1 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|305662515|ref|YP_003858803.1| - 6.2e-05 22.7 9.4 0.0042 16.8 0.6 2.2 1 1 1 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662515|ref|YP_003858803.1| - 0.00033 19.7 17.4 0.19 10.9 1.0 3.9 3 1 1 4 4 4 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305662515|ref|YP_003858803.1| - 0.00039 19.7 17.2 0.00056 19.2 1.6 3.2 3 1 0 3 3 3 2 zinc-ribbon domain PolC_DP2 PF03833.8 gi|305662515|ref|YP_003858803.1| - 0.0017 16.1 3.7 0.0017 16.1 2.6 1.0 1 0 0 1 1 1 1 DNA polymerase II large subunit DP2 Prok-RING_1 PF14446.1 gi|305662515|ref|YP_003858803.1| - 0.0083 15.8 2.9 0.0083 15.8 2.0 2.2 1 1 1 2 2 2 1 Prokaryotic RING finger family 1 zf-B_box PF00643.19 gi|305662515|ref|YP_003858803.1| - 0.0085 15.9 7.7 0.53 10.2 1.1 2.5 1 1 1 2 2 2 2 B-box zinc finger C1_1 PF00130.17 gi|305662515|ref|YP_003858803.1| - 0.009 15.7 9.3 0.015 15.0 1.7 2.3 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1272 PF06906.6 gi|305662515|ref|YP_003858803.1| - 0.015 15.1 9.3 0.14 12.0 0.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-MYND PF01753.13 gi|305662515|ref|YP_003858803.1| - 0.024 14.4 7.0 0.054 13.3 0.1 2.4 1 1 1 2 2 2 0 MYND finger IBR PF01485.16 gi|305662515|ref|YP_003858803.1| - 0.035 13.9 9.9 0.74 9.7 6.8 2.1 1 1 0 1 1 1 0 IBR domain DUF2296 PF10058.4 gi|305662515|ref|YP_003858803.1| - 0.05 13.3 17.8 0.66 9.7 2.8 3.9 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) OrfB_Zn_ribbon PF07282.6 gi|305662515|ref|YP_003858803.1| - 0.069 12.8 11.6 0.091 12.4 0.6 2.6 1 1 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|305662515|ref|YP_003858803.1| - 0.11 11.8 13.9 0.12 11.7 1.5 2.8 3 1 0 3 3 3 0 TFIIB zinc-binding DUF2072 PF09845.4 gi|305662515|ref|YP_003858803.1| - 0.13 12.1 8.6 0.29 11.0 2.8 2.1 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) A2L_zn_ribbon PF08792.5 gi|305662515|ref|YP_003858803.1| - 0.14 11.6 14.2 2 8.0 3.1 3.6 1 1 1 2 2 2 0 A2L zinc ribbon domain zf-NADH-PPase PF09297.6 gi|305662515|ref|YP_003858803.1| - 0.15 11.6 10.2 1.1 8.7 0.1 3.9 4 0 0 4 4 4 0 NADH pyrophosphatase zinc ribbon domain zf-AN1 PF01428.11 gi|305662515|ref|YP_003858803.1| - 0.15 11.9 8.6 0.91 9.4 0.4 2.6 1 1 1 2 2 2 0 AN1-like Zinc finger C1_3 PF07649.7 gi|305662515|ref|YP_003858803.1| - 0.19 11.7 8.7 2.9 8.0 0.6 2.5 2 1 0 2 2 2 0 C1-like domain PhnA_Zn_Ribbon PF08274.7 gi|305662515|ref|YP_003858803.1| - 0.19 11.5 8.6 6.5 6.6 0.1 3.8 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zf-Mss51 PF13824.1 gi|305662515|ref|YP_003858803.1| - 0.2 11.5 10.0 2.4 8.0 3.2 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 COPI_C PF06957.6 gi|305662515|ref|YP_003858803.1| - 0.3 9.5 2.0 0.35 9.3 1.4 1.1 1 0 0 1 1 1 0 Coatomer (COPI) alpha subunit C-terminus HypA PF01155.14 gi|305662515|ref|YP_003858803.1| - 0.44 10.2 9.0 0.47 10.1 2.9 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|305662515|ref|YP_003858803.1| - 0.46 10.2 18.1 0.96 9.2 8.2 3.3 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF4206 PF13901.1 gi|305662515|ref|YP_003858803.1| - 0.77 9.2 7.0 0.91 9.0 4.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) zf-LSD1 PF06943.7 gi|305662515|ref|YP_003858803.1| - 0.78 9.4 11.2 1.2 8.8 0.2 3.9 4 0 0 4 4 4 0 LSD1 zinc finger Auto_anti-p27 PF06677.7 gi|305662515|ref|YP_003858803.1| - 0.9 9.3 14.8 1.3 8.8 2.8 3.5 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rpr2 PF04032.11 gi|305662515|ref|YP_003858803.1| - 1.1 9.2 9.6 5.9 6.8 6.7 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain ADK_lid PF05191.9 gi|305662515|ref|YP_003858803.1| - 1.1 9.0 10.4 9.8 5.9 0.1 3.9 4 0 0 4 4 4 0 Adenylate kinase, active site lid Zn_ribbon_recom PF13408.1 gi|305662515|ref|YP_003858803.1| - 1.1 9.5 8.5 0.4 10.9 3.3 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain TFIIS_C PF01096.13 gi|305662515|ref|YP_003858803.1| - 1.2 8.8 16.6 19 4.9 0.3 3.9 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) zf-RING_5 PF14634.1 gi|305662515|ref|YP_003858803.1| - 1.3 8.7 10.2 3.2 7.5 7.1 1.7 1 1 0 1 1 1 0 zinc-RING finger domain Sgf11 PF08209.6 gi|305662515|ref|YP_003858803.1| - 1.7 8.0 16.9 1.8 7.9 0.2 3.8 3 1 1 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_4 PF13717.1 gi|305662515|ref|YP_003858803.1| - 1.7 8.4 19.8 1.2 8.8 2.8 4.0 1 1 1 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305662515|ref|YP_003858803.1| - 1.7 8.2 20.0 1 8.9 2.7 4.0 1 1 2 3 3 3 0 zinc-ribbon domain RRN7 PF11781.3 gi|305662515|ref|YP_003858803.1| - 1.7 8.1 12.2 0.21 11.1 0.7 3.4 3 1 1 4 4 4 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-tcix PF14952.1 gi|305662515|ref|YP_003858803.1| - 2.1 7.7 13.6 2.8 7.3 1.5 3.0 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding DNA_RNApol_7kD PF03604.8 gi|305662515|ref|YP_003858803.1| - 2.3 7.7 16.6 0.44 10.0 1.5 3.3 2 2 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Tnp_zf-ribbon_2 PF13842.1 gi|305662515|ref|YP_003858803.1| - 2.4 8.6 13.9 4.1e+02 1.5 9.7 2.7 1 1 0 1 1 1 0 DDE_Tnp_1-like zinc-ribbon Ribosomal_L32p PF01783.18 gi|305662515|ref|YP_003858803.1| - 5.2 7.3 9.6 53 4.1 0.8 3.3 1 1 2 3 3 3 0 Ribosomal L32p protein family zf-UBR PF02207.15 gi|305662515|ref|YP_003858803.1| - 7.3 6.3 11.0 1.6e+02 2.1 5.9 2.8 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) Rubredoxin PF00301.15 gi|305662515|ref|YP_003858803.1| - 8.1 6.4 14.8 11 6.0 0.1 3.6 3 1 0 3 3 3 0 Rubredoxin C1_4 PF07975.7 gi|305662515|ref|YP_003858803.1| - 8.2 6.5 12.2 12 5.9 4.0 2.9 1 1 1 2 2 2 0 TFIIH C1-like domain zf-RING_2 PF13639.1 gi|305662515|ref|YP_003858803.1| - 8.6 6.2 9.9 16 5.4 6.9 1.5 1 1 0 1 1 1 0 Ring finger domain Ribosomal_L37ae PF01780.14 gi|305662515|ref|YP_003858803.1| - 8.8 6.2 9.4 17 5.3 3.9 2.8 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-HIT PF04438.11 gi|305662515|ref|YP_003858803.1| - 9.9 5.9 20.4 19 4.9 5.1 3.7 2 2 0 2 2 2 0 HIT zinc finger EF1_GNE PF00736.14 gi|305662516|ref|YP_003858804.1| - 3.2e-13 49.1 1.9 3.7e-13 48.9 1.3 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3970 PF13113.1 gi|305662516|ref|YP_003858804.1| - 0.031 13.9 1.3 0.084 12.5 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3970) MoaE PF02391.12 gi|305662516|ref|YP_003858804.1| - 0.18 11.6 0.5 1.1 9.0 0.1 2.0 1 1 1 2 2 2 0 MoaE protein P2 PF07194.6 gi|305662516|ref|YP_003858804.1| - 0.21 11.4 2.0 0.31 10.9 0.1 2.0 2 1 0 2 2 2 0 P2 response regulator binding domain HTH_24 PF13412.1 gi|305662517|ref|YP_003858805.1| - 0.00058 19.1 0.0 0.00081 18.7 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Penicillinase_R PF03965.11 gi|305662517|ref|YP_003858805.1| - 0.0017 18.4 0.2 0.002 18.1 0.1 1.1 1 0 0 1 1 1 1 Penicillinase repressor Mrr_N PF14338.1 gi|305662517|ref|YP_003858805.1| - 0.0085 16.1 0.0 0.013 15.5 0.0 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain TFIIE_alpha PF02002.12 gi|305662517|ref|YP_003858805.1| - 0.013 15.0 0.4 0.015 14.7 0.3 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2551 PF10826.3 gi|305662517|ref|YP_003858805.1| - 0.014 15.2 0.2 0.017 15.0 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2551) DUF4145 PF13643.1 gi|305662517|ref|YP_003858805.1| - 0.065 13.0 0.0 0.08 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) Cdc6_C PF09079.6 gi|305662517|ref|YP_003858805.1| - 0.073 12.8 0.7 0.39 10.4 0.5 1.9 1 1 0 1 1 1 0 CDC6, C terminal YjcQ PF09639.5 gi|305662517|ref|YP_003858805.1| - 0.11 12.5 0.3 0.13 12.3 0.2 1.1 1 0 0 1 1 1 0 YjcQ protein XPG_I PF00867.13 gi|305662518|ref|YP_003858806.1| - 3.4e-26 91.1 0.0 5.8e-26 90.3 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|305662518|ref|YP_003858806.1| - 7e-23 80.8 0.0 4.7e-22 78.1 0.0 2.1 2 0 0 2 2 2 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|305662518|ref|YP_003858806.1| - 2.1e-09 37.5 0.0 5.4e-09 36.2 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.1 gi|305662518|ref|YP_003858806.1| - 0.0016 18.5 0.3 0.013 15.6 0.0 2.5 2 1 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|305662518|ref|YP_003858806.1| - 0.017 14.9 0.0 0.056 13.3 0.0 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF1771 PF08590.5 gi|305662518|ref|YP_003858806.1| - 0.049 13.6 1.2 0.13 12.3 0.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) HHH PF00633.18 gi|305662518|ref|YP_003858806.1| - 0.059 13.1 0.1 0.24 11.1 0.1 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif OTCace PF00185.19 gi|305662519|ref|YP_003858807.1| - 1.6e-54 184.0 0.0 2.6e-54 183.3 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.16 gi|305662519|ref|YP_003858807.1| - 1.9e-48 163.7 0.0 3.1e-48 163.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Root_cap PF06830.6 gi|305662519|ref|YP_003858807.1| - 0.017 14.9 0.0 0.85 9.4 0.0 2.3 2 0 0 2 2 2 0 Root cap Topoisom_I_N PF02919.10 gi|305662520|ref|YP_003858808.1| - 0.0031 16.8 5.4 0.0059 15.9 3.7 1.4 1 0 0 1 1 1 1 Eukaryotic DNA topoisomerase I, DNA binding fragment BLVR PF06375.6 gi|305662520|ref|YP_003858808.1| - 0.045 13.5 10.4 0.065 13.0 7.2 1.3 1 0 0 1 1 1 0 Bovine leukaemia virus receptor (BLVR) ERK-JNK_inhib PF15002.1 gi|305662520|ref|YP_003858808.1| - 0.062 12.6 6.8 0.091 12.1 4.7 1.3 1 0 0 1 1 1 0 ERK and JNK pathways, inhibitor Adenosine_kin PF04008.9 gi|305662521|ref|YP_003858809.1| - 8.5e-72 239.7 0.1 9.7e-72 239.5 0.0 1.0 1 0 0 1 1 1 1 Adenosine specific kinase DUF3967 PF13152.1 gi|305662521|ref|YP_003858809.1| - 0.0023 17.4 0.0 0.0042 16.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3967) tRNA_lig_CPD PF08302.6 gi|305662522|ref|YP_003858810.1| - 0.017 14.3 0.0 0.018 14.2 0.0 1.1 1 0 0 1 1 1 0 Fungal tRNA ligase phosphodiesterase domain Eclosion PF04736.7 gi|305662523|ref|YP_003858811.1| - 1.4 8.4 4.7 0.99 8.8 0.6 2.3 2 1 1 3 3 3 0 Eclosion hormone DUF1803 PF08820.5 gi|305662524|ref|YP_003858812.1| - 0.041 13.6 0.4 0.059 13.0 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1803) AdoMet_dc PF02675.10 gi|305662525|ref|YP_003858813.1| - 5.4e-32 109.8 0.0 6.1e-32 109.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase T2SE PF00437.15 gi|305662526|ref|YP_003858814.1| - 1.4e-12 47.1 0.0 3.1e-12 45.9 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|305662526|ref|YP_003858814.1| - 6.4e-07 30.2 0.1 8.1e-05 23.4 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|305662526|ref|YP_003858814.1| - 8.3e-05 22.9 0.6 0.0016 18.7 0.0 3.2 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|305662526|ref|YP_003858814.1| - 0.0001 22.3 0.0 0.00027 20.9 0.0 1.7 2 0 0 2 2 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|305662526|ref|YP_003858814.1| - 0.0012 18.7 0.0 0.0027 17.6 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305662526|ref|YP_003858814.1| - 0.0024 18.0 0.0 0.0083 16.3 0.0 2.0 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|305662526|ref|YP_003858814.1| - 0.0024 18.0 0.0 0.0063 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|305662526|ref|YP_003858814.1| - 0.0026 16.8 0.0 0.0082 15.2 0.0 1.8 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_28 PF13521.1 gi|305662526|ref|YP_003858814.1| - 0.005 16.8 0.0 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|305662526|ref|YP_003858814.1| - 0.0062 16.2 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|305662526|ref|YP_003858814.1| - 0.0063 15.9 0.0 0.014 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|305662526|ref|YP_003858814.1| - 0.0091 15.4 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|305662526|ref|YP_003858814.1| - 0.011 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.7 gi|305662526|ref|YP_003858814.1| - 0.011 14.8 0.0 0.03 13.4 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin ArgK PF03308.11 gi|305662526|ref|YP_003858814.1| - 0.011 14.4 0.0 0.022 13.5 0.0 1.3 1 0 0 1 1 1 0 ArgK protein FtsK_SpoIIIE PF01580.13 gi|305662526|ref|YP_003858814.1| - 0.013 14.9 0.0 0.03 13.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_33 PF13671.1 gi|305662526|ref|YP_003858814.1| - 0.014 15.2 0.0 0.065 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305662526|ref|YP_003858814.1| - 0.017 14.7 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|305662526|ref|YP_003858814.1| - 0.018 14.7 0.1 0.073 12.7 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.9 gi|305662526|ref|YP_003858814.1| - 0.021 14.5 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) KTI12 PF08433.5 gi|305662526|ref|YP_003858814.1| - 0.024 13.8 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.12 gi|305662526|ref|YP_003858814.1| - 0.026 13.9 0.0 0.079 12.3 0.0 1.9 1 1 1 2 2 2 0 Thymidylate kinase ABC_tran PF00005.22 gi|305662526|ref|YP_003858814.1| - 0.027 14.7 0.0 0.096 12.9 0.0 1.9 3 0 0 3 3 1 0 ABC transporter DnaB_C PF03796.10 gi|305662526|ref|YP_003858814.1| - 0.028 13.3 0.0 0.051 12.4 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain UPF0079 PF02367.12 gi|305662526|ref|YP_003858814.1| - 0.031 13.9 0.0 0.072 12.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|305662526|ref|YP_003858814.1| - 0.04 13.3 0.0 0.07 12.5 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain ATP_bind_1 PF03029.12 gi|305662526|ref|YP_003858814.1| - 0.049 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_30 PF13604.1 gi|305662526|ref|YP_003858814.1| - 0.069 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|305662526|ref|YP_003858814.1| - 0.12 11.2 0.0 0.22 10.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|305662526|ref|YP_003858814.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|305662526|ref|YP_003858814.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase MerR_1 PF13411.1 gi|305662526|ref|YP_003858814.1| - 0.19 11.5 2.3 8.3 6.2 0.1 3.6 4 0 0 4 4 3 0 MerR HTH family regulatory protein Hjc PF01870.13 gi|305662527|ref|YP_003858815.1| - 6.8e-27 92.9 1.2 9.7e-27 92.4 0.9 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NERD PF08378.6 gi|305662527|ref|YP_003858815.1| - 0.00068 19.8 0.2 0.0011 19.2 0.1 1.4 1 1 0 1 1 1 1 Nuclease-related domain Ribosomal_L13e PF01294.13 gi|305662528|ref|YP_003858816.1| - 8.1e-08 31.9 0.1 9.1e-08 31.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e ATP_bind_3 PF01171.15 gi|305662530|ref|YP_003858818.1| - 6.1e-12 45.4 0.0 1.1e-11 44.5 0.0 1.4 1 1 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|305662530|ref|YP_003858818.1| - 3.3e-06 26.1 0.0 4.8e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|305662530|ref|YP_003858818.1| - 0.0003 19.4 0.0 0.00039 19.0 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase DZR PF12773.2 gi|305662530|ref|YP_003858818.1| - 0.018 14.8 8.6 0.25 11.1 0.4 3.3 3 0 0 3 3 3 0 Double zinc ribbon PAPS_reduct PF01507.14 gi|305662530|ref|YP_003858818.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family zf-dskA_traR PF01258.12 gi|305662530|ref|YP_003858818.1| - 0.14 11.9 8.1 4.9 6.9 0.9 3.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.1 gi|305662530|ref|YP_003858818.1| - 0.14 11.8 0.4 0.14 11.8 0.2 2.8 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) TFIIS_C PF01096.13 gi|305662530|ref|YP_003858818.1| - 1.1 8.8 4.0 2 8.1 0.0 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) DUF211 PF02680.9 gi|305662531|ref|YP_003858819.1| - 1.1e-30 105.2 6.2 1.2e-30 105.1 4.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 HMA PF00403.21 gi|305662531|ref|YP_003858819.1| - 0.0026 17.8 1.5 0.03 14.4 1.0 2.2 1 1 0 1 1 1 1 Heavy-metal-associated domain YabP PF07873.6 gi|305662531|ref|YP_003858819.1| - 0.017 14.6 3.4 0.026 14.0 2.3 1.3 1 0 0 1 1 1 0 YabP family Transaldolase PF00923.14 gi|305662532|ref|YP_003858820.1| - 0.062 12.4 0.3 0.12 11.4 0.0 1.6 2 0 0 2 2 2 0 Transaldolase Thi4 PF01946.12 gi|305662533|ref|YP_003858821.1| - 0.0028 16.7 0.3 0.0038 16.3 0.2 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|305662533|ref|YP_003858821.1| - 0.066 13.6 0.0 0.21 12.0 0.0 1.9 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thioredoxin_3 PF13192.1 gi|305662534|ref|YP_003858822.1| - 0.00024 20.8 0.0 0.00032 20.4 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain HSP20 PF00011.16 gi|305662536|ref|YP_003858824.1| - 9.8e-11 41.4 4.5 4.5e-10 39.3 1.2 2.4 2 1 0 2 2 2 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|305662536|ref|YP_003858824.1| - 0.00035 20.2 0.7 0.00049 19.7 0.5 1.2 1 0 0 1 1 1 1 GvpH PIH1 PF08190.7 gi|305662536|ref|YP_003858824.1| - 0.023 14.1 0.1 0.031 13.7 0.1 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 MAP65_ASE1 PF03999.7 gi|305662536|ref|YP_003858824.1| - 0.094 11.2 2.3 0.89 8.0 0.6 2.1 2 0 0 2 2 2 0 Microtubule associated protein (MAP65/ASE1 family) CS PF04969.11 gi|305662536|ref|YP_003858824.1| - 0.1 13.1 0.1 0.15 12.6 0.1 1.2 1 0 0 1 1 1 0 CS domain zf-ZPR1 PF03367.8 gi|305662537|ref|YP_003858825.1| - 8.2e-20 70.5 3.1 1e-19 70.2 2.1 1.1 1 0 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.1 gi|305662537|ref|YP_003858825.1| - 0.0034 17.6 0.2 0.0064 16.7 0.2 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1 PF03811.8 gi|305662537|ref|YP_003858825.1| - 0.012 15.0 0.3 4.1 6.9 0.0 2.3 2 0 0 2 2 2 0 InsA N-terminal domain Mu-like_Com PF10122.4 gi|305662537|ref|YP_003858825.1| - 0.018 14.1 0.1 1.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Mu-like prophage protein Com zf-ribbon_3 PF13248.1 gi|305662537|ref|YP_003858825.1| - 0.031 13.4 0.6 0.031 13.4 0.4 2.3 3 0 0 3 3 3 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|305662537|ref|YP_003858825.1| - 0.056 13.1 0.9 0.084 12.5 0.0 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.1 gi|305662537|ref|YP_003858825.1| - 0.067 12.8 3.7 0.67 9.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|305662537|ref|YP_003858825.1| - 0.089 12.5 1.0 0.63 9.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.1 gi|305662537|ref|YP_003858825.1| - 0.093 13.0 0.7 17 5.9 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain Elf1 PF05129.8 gi|305662537|ref|YP_003858825.1| - 0.099 12.3 0.4 0.22 11.2 0.3 1.6 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_5 PF13719.1 gi|305662537|ref|YP_003858825.1| - 0.1 12.1 4.6 0.51 9.9 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF329 PF03884.9 gi|305662537|ref|YP_003858825.1| - 0.12 11.9 0.2 14 5.3 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zinc-ribbons_6 PF07191.7 gi|305662537|ref|YP_003858825.1| - 0.15 11.8 0.7 0.32 10.8 0.2 1.7 2 0 0 2 2 2 0 zinc-ribbons STT3 PF02516.9 gi|305662538|ref|YP_003858826.1| - 8.3e-14 51.4 46.4 1.4e-13 50.7 32.2 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit zf-C2H2_4 PF13894.1 gi|305662539|ref|YP_003858827.1| - 0.034 14.4 0.1 0.098 13.0 0.1 1.8 1 1 0 1 1 1 0 C2H2-type zinc finger RNA_pol_Rpb8 PF03870.10 gi|305662540|ref|YP_003858828.1| - 0.00047 20.3 1.5 0.0089 16.2 1.1 2.0 1 1 0 1 1 1 1 RNA polymerase Rpb8 FoP_duplication PF13865.1 gi|305662540|ref|YP_003858828.1| - 0.044 14.2 0.0 0.079 13.4 0.0 1.5 1 1 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 Lsm_C PF14894.1 gi|305662541|ref|YP_003858829.1| - 2.3e-27 94.2 0.4 4.4e-27 93.3 0.3 1.5 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.17 gi|305662541|ref|YP_003858829.1| - 3.7e-07 29.6 0.0 6.6e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|305662541|ref|YP_003858829.1| - 0.0033 17.3 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Gemin6 PF06372.7 gi|305662541|ref|YP_003858829.1| - 0.0059 15.9 0.0 0.0071 15.6 0.0 1.4 1 1 0 1 1 1 1 Gemin6 protein TGT PF01702.13 gi|305662542|ref|YP_003858830.1| - 5.7e-47 160.0 0.0 8.4e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PAC2 PF09754.4 gi|305662543|ref|YP_003858831.1| - 2.6e-34 119.0 0.0 3.1e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 PAC2 family DUF61 PF01886.11 gi|305662543|ref|YP_003858831.1| - 0.04 13.7 0.2 0.084 12.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF61 TGT_C2 PF14810.1 gi|305662544|ref|YP_003858832.1| - 1.5e-19 69.5 0.0 5.2e-19 67.8 0.0 1.8 2 1 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|305662544|ref|YP_003858832.1| - 9.2e-12 44.5 0.2 1.3e-11 44.0 0.1 1.3 1 0 0 1 1 1 1 PUA domain AAA PF00004.24 gi|305662545|ref|YP_003858833.1| - 9.1e-43 145.6 0.0 1.8e-42 144.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305662545|ref|YP_003858833.1| - 5.9e-07 29.2 0.1 4.9e-06 26.3 0.1 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|305662545|ref|YP_003858833.1| - 7.1e-07 29.2 0.0 1.9e-06 27.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|305662545|ref|YP_003858833.1| - 8.3e-07 29.1 0.2 5.8e-06 26.4 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|305662545|ref|YP_003858833.1| - 3.8e-06 27.0 0.3 0.0004 20.5 0.2 2.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|305662545|ref|YP_003858833.1| - 6.9e-06 25.1 0.0 2.2e-05 23.5 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|305662545|ref|YP_003858833.1| - 9e-06 25.6 0.0 2.2e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.7 gi|305662545|ref|YP_003858833.1| - 3e-05 23.1 0.0 6.7e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|305662545|ref|YP_003858833.1| - 5.3e-05 24.0 0.2 0.00018 22.3 0.0 2.0 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|305662545|ref|YP_003858833.1| - 0.00029 20.0 0.0 0.00056 19.0 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin IstB_IS21 PF01695.12 gi|305662545|ref|YP_003858833.1| - 0.00045 19.6 0.0 0.00088 18.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|305662545|ref|YP_003858833.1| - 0.0009 18.9 0.0 0.0028 17.3 0.0 1.9 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|305662545|ref|YP_003858833.1| - 0.0014 18.4 3.5 0.0058 16.3 0.0 3.2 3 1 0 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|305662545|ref|YP_003858833.1| - 0.0015 18.6 0.0 0.0065 16.6 0.0 2.1 2 0 0 2 2 2 1 RNA helicase NACHT PF05729.7 gi|305662545|ref|YP_003858833.1| - 0.0017 18.0 0.1 0.033 13.8 0.0 2.3 1 1 1 2 2 2 1 NACHT domain TIP49 PF06068.8 gi|305662545|ref|YP_003858833.1| - 0.0017 17.1 0.0 0.0043 15.8 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_28 PF13521.1 gi|305662545|ref|YP_003858833.1| - 0.0021 18.0 0.0 0.0039 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain FlaC_arch PF05377.6 gi|305662545|ref|YP_003858833.1| - 0.0028 17.5 2.4 0.34 10.8 0.7 2.7 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) NTPase_1 PF03266.10 gi|305662545|ref|YP_003858833.1| - 0.0036 17.0 0.6 5.1 6.7 0.0 3.3 2 1 1 3 3 3 0 NTPase ABC_tran PF00005.22 gi|305662545|ref|YP_003858833.1| - 0.0046 17.2 0.0 0.023 14.9 0.0 2.1 2 1 0 2 2 1 1 ABC transporter Mg_chelatase PF01078.16 gi|305662545|ref|YP_003858833.1| - 0.0046 16.1 0.0 0.011 14.8 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|305662545|ref|YP_003858833.1| - 0.0055 17.0 0.3 0.03 14.6 0.0 2.4 3 0 0 3 3 2 1 AAA domain AAA_33 PF13671.1 gi|305662545|ref|YP_003858833.1| - 0.01 15.6 0.0 0.022 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|305662545|ref|YP_003858833.1| - 0.011 15.3 0.0 0.022 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Parvo_NS1 PF01057.12 gi|305662545|ref|YP_003858833.1| - 0.011 14.5 0.0 0.025 13.4 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|305662545|ref|YP_003858833.1| - 0.012 15.2 0.0 0.037 13.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial dnaA protein AAA_25 PF13481.1 gi|305662545|ref|YP_003858833.1| - 0.012 15.0 0.8 0.096 12.0 0.1 2.5 1 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|305662545|ref|YP_003858833.1| - 0.012 15.6 0.0 0.081 12.9 0.0 2.4 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_3 PF07726.6 gi|305662545|ref|YP_003858833.1| - 0.012 15.1 0.0 0.027 14.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|305662545|ref|YP_003858833.1| - 0.018 13.9 0.0 0.036 12.9 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain PEP-utilisers_N PF05524.8 gi|305662545|ref|YP_003858833.1| - 0.026 14.3 0.0 0.23 11.2 0.0 2.6 2 1 1 3 3 2 0 PEP-utilising enzyme, N-terminal KaiC PF06745.8 gi|305662545|ref|YP_003858833.1| - 0.036 13.1 0.2 0.28 10.2 0.0 2.3 1 1 1 2 2 2 0 KaiC Sigma54_activat PF00158.21 gi|305662545|ref|YP_003858833.1| - 0.049 13.1 0.0 0.13 11.7 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain Viral_helicase1 PF01443.13 gi|305662545|ref|YP_003858833.1| - 0.089 12.2 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase bZIP_1 PF00170.16 gi|305662545|ref|YP_003858833.1| - 0.095 12.6 4.1 0.23 11.4 2.4 2.0 2 0 0 2 2 1 0 bZIP transcription factor ATP-synt_ab PF00006.20 gi|305662545|ref|YP_003858833.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Spc42p PF11544.3 gi|305662545|ref|YP_003858833.1| - 0.11 12.4 1.1 0.23 11.3 0.8 1.5 1 0 0 1 1 1 0 Spindle pole body component Spc42p Syntaxin-6_N PF09177.6 gi|305662545|ref|YP_003858833.1| - 0.15 12.4 1.7 8.8 6.8 0.0 2.8 3 0 0 3 3 2 0 Syntaxin 6, N-terminal Med9 PF07544.8 gi|305662545|ref|YP_003858833.1| - 0.35 10.6 2.6 2.4 7.9 0.5 2.5 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 AAA_21 PF13304.1 gi|305662545|ref|YP_003858833.1| - 1 9.2 5.1 11 5.9 0.1 3.5 2 2 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|305662545|ref|YP_003858833.1| - 2.1 8.6 6.8 2.7 8.2 0.0 2.7 1 1 1 2 2 2 0 AAA domain HTH_19 PF12844.2 gi|305662546|ref|YP_003858834.1| - 1e-09 38.2 1.4 9.2e-09 35.2 0.7 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|305662546|ref|YP_003858834.1| - 2e-09 37.1 1.0 2e-09 37.1 0.7 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_31 PF13560.1 gi|305662546|ref|YP_003858834.1| - 2.1e-08 34.2 0.0 4.3e-08 33.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|305662546|ref|YP_003858834.1| - 0.0001 21.8 0.1 0.00021 20.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|305662546|ref|YP_003858834.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|305662546|ref|YP_003858834.1| - 0.0048 17.0 1.6 0.018 15.2 0.1 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain Neugrin PF06413.6 gi|305662546|ref|YP_003858834.1| - 0.81 9.4 3.9 0.44 10.3 0.2 1.9 1 1 1 2 2 2 0 Neugrin Zn_ribbon_2 PF12674.2 gi|305662546|ref|YP_003858834.1| - 1.7 9.0 4.3 4.1 7.8 2.9 2.0 1 1 0 1 1 1 0 Putative zinc ribbon domain MMR_HSR1 PF01926.18 gi|305662547|ref|YP_003858835.1| - 9.6e-20 70.6 0.8 9.6e-20 70.6 0.6 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|305662547|ref|YP_003858835.1| - 1.2e-09 37.8 2.1 9.1e-08 31.7 1.5 2.5 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain FeoB_N PF02421.13 gi|305662547|ref|YP_003858835.1| - 6.7e-09 35.2 3.4 1.4e-08 34.1 2.0 1.9 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP-bdg_N PF13167.1 gi|305662547|ref|YP_003858835.1| - 2.5e-08 33.9 0.2 2.5e-08 33.9 0.2 1.9 2 0 0 2 2 2 1 GTP-binding GTPase N-terminal Miro PF08477.8 gi|305662547|ref|YP_003858835.1| - 9.8e-06 26.0 0.2 2.2e-05 24.9 0.2 1.6 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|305662547|ref|YP_003858835.1| - 1.2e-05 24.7 0.1 2.6e-05 23.6 0.1 1.6 1 1 0 1 1 1 1 Ras family Arf PF00025.16 gi|305662547|ref|YP_003858835.1| - 2.8e-05 23.4 3.4 2.8e-05 23.4 2.3 2.0 1 1 1 2 2 2 1 ADP-ribosylation factor family Dynamin_N PF00350.18 gi|305662547|ref|YP_003858835.1| - 0.00041 20.1 0.7 0.42 10.4 0.1 2.5 1 1 1 2 2 2 2 Dynamin family MobB PF03205.9 gi|305662547|ref|YP_003858835.1| - 0.00071 19.2 0.5 0.0015 18.2 0.4 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRPRB PF09439.5 gi|305662547|ref|YP_003858835.1| - 0.0011 18.2 3.5 0.0051 16.0 2.4 2.0 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit PduV-EutP PF10662.4 gi|305662547|ref|YP_003858835.1| - 0.0013 18.1 2.6 0.012 15.1 1.8 2.4 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation ABC_tran PF00005.22 gi|305662547|ref|YP_003858835.1| - 0.0019 18.5 0.4 0.0065 16.7 0.3 2.0 1 1 0 1 1 1 1 ABC transporter ATP_bind_1 PF03029.12 gi|305662547|ref|YP_003858835.1| - 0.016 14.7 0.5 0.29 10.6 0.1 2.2 1 1 1 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|305662547|ref|YP_003858835.1| - 0.024 14.0 4.2 0.67 9.3 1.0 2.5 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.15 gi|305662547|ref|YP_003858835.1| - 0.14 10.8 3.6 1.8 7.2 0.1 2.2 1 1 1 2 2 2 0 G-protein alpha subunit Trm56 PF01994.11 gi|305662548|ref|YP_003858836.1| - 1.8e-44 150.3 0.1 2.3e-44 150.0 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TFIIE_alpha PF02002.12 gi|305662549|ref|YP_003858837.1| - 1.1e-17 63.3 2.9 1.8e-17 62.7 2.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_9 PF08221.6 gi|305662549|ref|YP_003858837.1| - 0.0014 18.4 0.0 0.009 15.8 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain GAT PF03127.9 gi|305662549|ref|YP_003858837.1| - 0.0021 17.9 2.4 4.4 7.3 0.0 3.1 3 0 0 3 3 3 2 GAT domain Sigma70_r3 PF04539.11 gi|305662549|ref|YP_003858837.1| - 0.0022 17.8 0.4 0.0066 16.3 0.0 1.9 2 0 0 2 2 2 1 Sigma-70 region 3 TrmB PF01978.14 gi|305662549|ref|YP_003858837.1| - 0.0028 17.3 0.3 0.0065 16.1 0.0 1.9 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|305662549|ref|YP_003858837.1| - 0.012 16.0 0.0 0.023 15.1 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal Rrf2 PF02082.15 gi|305662549|ref|YP_003858837.1| - 0.018 15.1 0.0 0.033 14.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TF_Zn_Ribbon PF08271.7 gi|305662549|ref|YP_003858837.1| - 0.018 14.3 1.2 0.032 13.5 0.8 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding HTH_36 PF13730.1 gi|305662549|ref|YP_003858837.1| - 0.029 14.5 0.1 0.095 12.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1886 PF09171.5 gi|305662549|ref|YP_003858837.1| - 0.045 12.7 1.0 0.062 12.3 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1886) HypA PF01155.14 gi|305662549|ref|YP_003858837.1| - 0.049 13.3 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family IF2_N PF04760.10 gi|305662549|ref|YP_003858837.1| - 0.052 13.1 3.6 0.49 10.1 0.0 3.3 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_IclR PF09339.5 gi|305662549|ref|YP_003858837.1| - 0.076 12.6 0.0 0.24 11.0 0.0 1.9 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|305662549|ref|YP_003858837.1| - 0.087 12.4 0.6 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 HTH domain DUF3791 PF12668.2 gi|305662549|ref|YP_003858837.1| - 0.092 12.3 1.0 3.4 7.3 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) DUF4217 PF13959.1 gi|305662549|ref|YP_003858837.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4217) zf-IS66 PF13005.2 gi|305662549|ref|YP_003858837.1| - 0.11 12.5 0.0 0.75 9.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HTH_40 PF14493.1 gi|305662549|ref|YP_003858837.1| - 0.12 12.6 1.7 2.1 8.6 0.2 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|305662549|ref|YP_003858837.1| - 0.22 10.9 0.1 0.22 10.9 0.0 2.7 3 1 1 4 4 4 0 Winged helix-turn-helix DNA-binding DNA_methylase PF00145.12 gi|305662550|ref|YP_003858838.1| - 3e-48 164.6 0.0 4e-46 157.6 0.0 2.0 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|305662550|ref|YP_003858838.1| - 0.00012 22.0 0.0 0.00022 21.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305662550|ref|YP_003858838.1| - 0.0012 18.3 0.1 0.0023 17.4 0.1 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF2122 PF09895.4 gi|305662551|ref|YP_003858839.1| - 5.4e-17 61.9 0.1 6.9e-17 61.5 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) Radical_SAM PF04055.16 gi|305662552|ref|YP_003858840.1| - 5.8e-15 55.8 0.0 1.3e-14 54.6 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily B12-binding PF02310.14 gi|305662552|ref|YP_003858840.1| - 3.3e-09 36.6 0.0 6.6e-09 35.6 0.0 1.5 1 0 0 1 1 1 1 B12 binding domain OSCP PF00213.13 gi|305662552|ref|YP_003858840.1| - 0.36 10.6 1.7 0.46 10.3 0.0 2.0 3 0 0 3 3 3 0 ATP synthase delta (OSCP) subunit DUF87 PF01935.12 gi|305662554|ref|YP_003858842.1| - 4.2e-31 108.5 0.8 8.2e-31 107.5 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|305662554|ref|YP_003858842.1| - 5.8e-27 94.9 0.1 1.3e-26 93.7 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF853 PF05872.7 gi|305662554|ref|YP_003858842.1| - 1.1e-10 40.5 0.0 0.00011 20.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|305662554|ref|YP_003858842.1| - 1.5e-09 37.0 0.1 3.2e-07 29.2 0.0 2.4 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.9 gi|305662554|ref|YP_003858842.1| - 1.2e-05 25.0 0.0 3.1e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|305662554|ref|YP_003858842.1| - 2.7e-05 24.3 0.1 0.28 11.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|305662554|ref|YP_003858842.1| - 8.8e-05 23.3 0.1 0.00023 21.9 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305662554|ref|YP_003858842.1| - 0.00031 20.9 0.5 0.6 10.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|305662554|ref|YP_003858842.1| - 0.0004 19.9 0.9 0.0075 15.7 0.0 2.4 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|305662554|ref|YP_003858842.1| - 0.00059 19.3 0.0 0.0047 16.4 0.0 2.2 2 1 0 2 2 2 1 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|305662554|ref|YP_003858842.1| - 0.0009 19.5 0.0 0.0022 18.3 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|305662554|ref|YP_003858842.1| - 0.00093 19.5 1.9 0.0047 17.2 0.1 2.9 3 1 0 3 3 3 1 AAA domain DEAD PF00270.24 gi|305662554|ref|YP_003858842.1| - 0.0015 18.0 0.0 0.76 9.2 0.0 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase CbiA PF01656.18 gi|305662554|ref|YP_003858842.1| - 0.002 17.5 0.0 0.0042 16.5 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.7 gi|305662554|ref|YP_003858842.1| - 0.0034 16.5 0.0 0.0076 15.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin T2SE PF00437.15 gi|305662554|ref|YP_003858842.1| - 0.0041 16.0 0.0 0.0084 15.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein ResIII PF04851.10 gi|305662554|ref|YP_003858842.1| - 0.0043 16.8 0.0 1.7 8.4 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.1 gi|305662554|ref|YP_003858842.1| - 0.0098 15.4 0.1 0.06 12.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|305662554|ref|YP_003858842.1| - 0.0098 15.8 0.4 0.14 12.0 0.3 2.5 2 1 0 2 2 1 1 AAA ATPase domain SRP54 PF00448.17 gi|305662554|ref|YP_003858842.1| - 0.012 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|305662554|ref|YP_003858842.1| - 0.033 13.6 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.7 gi|305662554|ref|YP_003858842.1| - 0.083 11.9 0.0 0.18 10.8 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus TraG-D_C PF12696.2 gi|305662554|ref|YP_003858842.1| - 0.095 12.5 0.0 0.3 10.9 0.0 1.9 2 0 0 2 2 1 0 TraM recognition site of TraD and TraG AAA_29 PF13555.1 gi|305662554|ref|YP_003858842.1| - 0.097 12.2 0.1 0.21 11.1 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ArgK PF03308.11 gi|305662554|ref|YP_003858842.1| - 0.14 10.9 0.0 0.23 10.2 0.0 1.2 1 0 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|305662554|ref|YP_003858842.1| - 0.26 10.9 1.4 1.1 8.8 0.1 2.3 2 0 0 2 2 2 0 NTPase Cpn60_TCP1 PF00118.19 gi|305662555|ref|YP_003858843.1| - 1.5e-165 551.5 7.2 1.7e-165 551.3 5.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Ribosomal_S17e PF00833.13 gi|305662556|ref|YP_003858844.1| - 2.8e-21 75.5 0.2 3e-21 75.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S17 ThiS PF02597.15 gi|305662557|ref|YP_003858845.1| - 0.0019 18.5 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 ThiS family Urm1 PF09138.6 gi|305662557|ref|YP_003858845.1| - 0.0068 16.5 1.7 0.0095 16.0 1.2 1.3 1 1 0 1 1 1 1 Urm1 (Ubiquitin related modifier) HobA PF12163.3 gi|305662558|ref|YP_003858846.1| - 0.044 13.0 0.6 0.059 12.6 0.4 1.2 1 0 0 1 1 1 0 DNA replication regulator DUF4562 PF15123.1 gi|305662558|ref|YP_003858846.1| - 0.065 13.1 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4562) DUF2313 PF10076.4 gi|305662558|ref|YP_003858846.1| - 0.065 12.6 0.0 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2313) ABC_tran PF00005.22 gi|305662559|ref|YP_003858847.1| - 8.1e-38 129.8 0.0 2e-18 67.0 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305662559|ref|YP_003858847.1| - 7.4e-17 62.2 9.6 7.1e-07 29.4 0.4 4.1 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305662559|ref|YP_003858847.1| - 6.7e-09 35.3 8.6 0.0049 16.1 0.2 3.9 3 1 0 4 4 4 3 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|305662559|ref|YP_003858847.1| - 1.4e-08 34.1 3.2 1.4e-08 34.1 2.2 2.5 3 0 0 3 3 2 1 Possible Fer4-like domain in RNase L inhibitor, RLI Fer4 PF00037.22 gi|305662559|ref|YP_003858847.1| - 3.9e-07 29.3 5.7 3.9e-07 29.3 3.9 3.0 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_17 PF13207.1 gi|305662559|ref|YP_003858847.1| - 8.7e-07 29.7 1.8 0.056 14.2 0.1 2.9 2 1 0 2 2 2 2 AAA domain MobB PF03205.9 gi|305662559|ref|YP_003858847.1| - 1e-05 25.2 3.4 0.042 13.5 0.0 3.5 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|305662559|ref|YP_003858847.1| - 1.5e-05 25.4 3.4 0.052 13.8 0.0 2.8 2 1 0 2 2 2 2 AAA domain Fer4_7 PF12838.2 gi|305662559|ref|YP_003858847.1| - 5.8e-05 23.3 6.4 5.8e-05 23.3 4.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain AAA_15 PF13175.1 gi|305662559|ref|YP_003858847.1| - 0.00016 20.8 4.9 0.19 10.7 0.1 4.1 3 1 1 4 4 4 1 AAA ATPase domain Fer4_6 PF12837.2 gi|305662559|ref|YP_003858847.1| - 0.0002 21.0 5.1 0.0002 21.0 3.5 2.6 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|305662559|ref|YP_003858847.1| - 0.00056 20.5 3.4 0.003 18.2 0.1 2.5 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|305662559|ref|YP_003858847.1| - 0.00094 18.9 8.4 0.00094 18.9 5.8 1.9 2 0 0 2 2 2 1 4Fe-4S dicluster domain AAA_29 PF13555.1 gi|305662559|ref|YP_003858847.1| - 0.0012 18.3 0.6 0.31 10.6 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain Fer4_2 PF12797.2 gi|305662559|ref|YP_003858847.1| - 0.0014 18.4 14.7 0.002 17.9 2.8 2.6 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_25 PF13481.1 gi|305662559|ref|YP_003858847.1| - 0.0018 17.7 1.2 3.4 7.0 0.0 3.3 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|305662559|ref|YP_003858847.1| - 0.002 18.0 0.3 0.46 10.3 0.0 2.9 2 1 0 2 2 2 1 AAA domain Fer4_10 PF13237.1 gi|305662559|ref|YP_003858847.1| - 0.0025 17.5 3.0 0.0025 17.5 2.1 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Dynamin_N PF00350.18 gi|305662559|ref|YP_003858847.1| - 0.0034 17.2 0.1 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 Dynamin family AAA_18 PF13238.1 gi|305662559|ref|YP_003858847.1| - 0.004 17.4 3.8 1.3 9.3 0.1 3.4 2 2 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|305662559|ref|YP_003858847.1| - 0.006 16.2 0.5 3.1 7.4 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Fer4_9 PF13187.1 gi|305662559|ref|YP_003858847.1| - 0.0069 16.6 8.3 0.0069 16.6 5.7 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain AAA_16 PF13191.1 gi|305662559|ref|YP_003858847.1| - 0.0072 16.3 0.1 0.42 10.5 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain RecA PF00154.16 gi|305662559|ref|YP_003858847.1| - 0.0078 15.3 0.4 1.5 7.7 0.0 2.4 2 0 0 2 2 2 1 recA bacterial DNA recombination protein Miro PF08477.8 gi|305662559|ref|YP_003858847.1| - 0.01 16.2 0.3 0.57 10.6 0.0 3.2 2 1 0 2 2 2 0 Miro-like protein AAA PF00004.24 gi|305662559|ref|YP_003858847.1| - 0.015 15.5 0.7 9.5 6.4 0.3 2.9 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|305662559|ref|YP_003858847.1| - 0.02 13.5 0.0 0.83 8.2 0.0 2.4 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|305662559|ref|YP_003858847.1| - 0.021 14.0 0.0 5.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|305662559|ref|YP_003858847.1| - 0.024 14.5 0.0 10 6.1 0.0 3.3 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RNA_helicase PF00910.17 gi|305662559|ref|YP_003858847.1| - 0.027 14.6 1.0 8.8 6.5 0.0 3.5 4 0 0 4 4 2 0 RNA helicase AAA_14 PF13173.1 gi|305662559|ref|YP_003858847.1| - 0.028 14.3 5.4 1.5 8.7 0.2 3.4 2 2 0 2 2 2 0 AAA domain Terpene_synth PF01397.16 gi|305662559|ref|YP_003858847.1| - 0.05 12.9 0.4 0.54 9.6 0.0 2.2 2 0 0 2 2 2 0 Terpene synthase, N-terminal domain Fer4_8 PF13183.1 gi|305662559|ref|YP_003858847.1| - 0.051 13.6 4.8 0.15 12.1 2.6 2.1 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|305662559|ref|YP_003858847.1| - 0.052 13.9 7.6 0.8 10.1 1.5 2.9 2 1 1 3 3 3 0 4Fe-4S dicluster domain RuvB_N PF05496.7 gi|305662559|ref|YP_003858847.1| - 0.057 12.4 0.1 4 6.4 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus PRK PF00485.13 gi|305662559|ref|YP_003858847.1| - 0.062 12.8 0.0 15 5.0 0.0 2.7 3 0 0 3 3 3 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|305662559|ref|YP_003858847.1| - 0.069 13.2 3.9 6.3 6.9 0.6 3.2 4 1 0 4 4 2 0 AAA domain MMR_HSR1 PF01926.18 gi|305662559|ref|YP_003858847.1| - 0.14 12.0 4.8 0.31 10.9 0.2 3.1 2 2 0 2 2 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|305662559|ref|YP_003858847.1| - 0.2 10.4 0.4 14 4.3 0.0 2.4 2 0 0 2 2 2 0 ArgK protein NACHT PF05729.7 gi|305662559|ref|YP_003858847.1| - 0.37 10.4 1.3 30 4.2 0.0 2.5 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|305662559|ref|YP_003858847.1| - 0.7 9.4 1.3 2.5 7.6 0.3 2.2 2 1 0 2 2 2 0 AAA domain Fer4_4 PF12800.2 gi|305662559|ref|YP_003858847.1| - 0.98 9.9 12.1 0.17 12.3 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.2 gi|305662559|ref|YP_003858847.1| - 1.6 9.4 8.7 0.31 11.6 2.5 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain FBPase_3 PF01950.11 gi|305662560|ref|YP_003858848.1| - 1.6e-188 626.2 0.0 1.8e-188 625.9 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase TIM PF00121.13 gi|305662561|ref|YP_003858849.1| - 7.2e-33 113.6 0.7 2.1e-30 105.5 0.5 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase IGPS PF00218.16 gi|305662561|ref|YP_003858849.1| - 2e-07 30.3 1.9 3.4e-07 29.5 0.5 2.0 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase ThiG PF05690.9 gi|305662561|ref|YP_003858849.1| - 7e-06 25.2 7.1 1.4e-05 24.3 4.9 1.8 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|305662561|ref|YP_003858849.1| - 0.0026 17.0 1.2 0.0026 17.0 0.9 2.7 3 1 1 4 4 4 1 Histidine biosynthesis protein PcrB PF01884.12 gi|305662561|ref|YP_003858849.1| - 0.005 16.1 2.6 0.005 16.1 1.8 1.8 2 1 0 2 2 2 1 PcrB family NMO PF03060.10 gi|305662561|ref|YP_003858849.1| - 0.0086 15.2 5.2 0.022 13.9 3.6 1.8 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|305662561|ref|YP_003858849.1| - 0.011 14.7 1.8 0.015 14.2 1.2 1.2 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Hydrolase_like PF13242.1 gi|305662561|ref|YP_003858849.1| - 0.021 14.5 0.3 1.1 9.0 0.0 3.1 2 1 1 3 3 3 0 HAD-hyrolase-like TIM-br_sig_trns PF09370.5 gi|305662561|ref|YP_003858849.1| - 0.027 13.5 1.9 0.031 13.3 0.8 1.6 2 1 0 2 2 2 0 TIM-barrel signal transduction protein DUF561 PF04481.7 gi|305662561|ref|YP_003858849.1| - 0.032 13.1 5.0 0.41 9.5 3.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF561) PucR PF07905.6 gi|305662561|ref|YP_003858849.1| - 0.064 12.8 3.8 7.1 6.2 0.1 3.5 2 1 2 4 4 4 0 Purine catabolism regulatory protein-like family PhnG PF06754.7 gi|305662562|ref|YP_003858850.1| - 0.033 13.8 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Phosphonate metabolism protein PhnG YtzH PF14165.1 gi|305662562|ref|YP_003858850.1| - 0.07 13.3 0.1 0.18 12.0 0.1 1.7 1 0 0 1 1 1 0 YtzH-like protein UPF0560 PF10577.4 gi|305662564|ref|YP_003858852.1| - 0.14 10.4 0.1 0.2 9.8 0.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 Rifin_STEVOR PF02009.11 gi|305662564|ref|YP_003858852.1| - 0.25 10.9 6.1 0.44 10.1 4.2 1.3 1 0 0 1 1 1 0 Rifin/stevor family DUF2583 PF10762.4 gi|305662565|ref|YP_003858853.1| - 1.9 8.6 4.5 14 5.9 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) T2SE PF00437.15 gi|305662566|ref|YP_003858854.1| - 1.6e-27 96.0 0.0 2.6e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|305662566|ref|YP_003858854.1| - 1.8e-05 25.0 0.0 0.00016 21.9 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_28 PF13521.1 gi|305662566|ref|YP_003858854.1| - 0.00032 20.7 0.0 0.00074 19.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|305662566|ref|YP_003858854.1| - 0.0016 18.8 0.0 0.0052 17.2 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein AAA_16 PF13191.1 gi|305662566|ref|YP_003858854.1| - 0.0025 17.8 0.0 0.0064 16.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|305662566|ref|YP_003858854.1| - 0.0038 16.7 0.8 0.0078 15.7 0.3 1.7 1 1 1 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|305662566|ref|YP_003858854.1| - 0.004 17.2 0.6 0.03 14.4 0.0 2.6 3 1 0 3 3 3 1 AAA domain MMR_HSR1 PF01926.18 gi|305662566|ref|YP_003858854.1| - 0.0071 16.2 0.3 0.077 12.9 0.0 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase CaMKII_AD PF08332.5 gi|305662566|ref|YP_003858854.1| - 0.01 15.7 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 0 Calcium/calmodulin dependent protein kinase II Association DUF258 PF03193.11 gi|305662566|ref|YP_003858854.1| - 0.012 14.8 0.0 0.023 13.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|305662566|ref|YP_003858854.1| - 0.012 15.0 0.0 0.027 13.9 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|305662566|ref|YP_003858854.1| - 0.016 14.7 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|305662566|ref|YP_003858854.1| - 0.016 15.9 5.0 0.027 15.2 0.0 3.2 2 2 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|305662566|ref|YP_003858854.1| - 0.02 14.3 0.0 0.042 13.3 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_21 PF13304.1 gi|305662566|ref|YP_003858854.1| - 0.023 14.6 0.0 0.023 14.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain MobB PF03205.9 gi|305662566|ref|YP_003858854.1| - 0.025 14.2 0.0 0.066 12.9 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|305662566|ref|YP_003858854.1| - 0.027 14.2 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|305662566|ref|YP_003858854.1| - 0.033 14.4 0.1 0.25 11.5 0.0 2.5 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|305662566|ref|YP_003858854.1| - 0.036 13.5 0.0 0.072 12.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|305662566|ref|YP_003858854.1| - 0.082 11.9 0.1 0.082 11.9 0.0 2.8 3 0 0 3 3 3 0 AAA ATPase domain AAA_23 PF13476.1 gi|305662566|ref|YP_003858854.1| - 0.12 12.6 1.1 0.25 11.6 0.1 2.0 2 0 0 2 2 2 0 AAA domain DUF927 PF06048.6 gi|305662566|ref|YP_003858854.1| - 0.13 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF927) ADH_zinc_N PF00107.21 gi|305662566|ref|YP_003858854.1| - 0.17 11.4 0.0 0.42 10.1 0.0 1.6 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF87 PF01935.12 gi|305662566|ref|YP_003858854.1| - 0.2 11.4 2.6 0.99 9.1 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function DUF87 AAA_18 PF13238.1 gi|305662566|ref|YP_003858854.1| - 0.32 11.3 5.5 0.56 10.5 0.0 3.5 3 2 2 5 5 4 0 AAA domain Ribosomal_L2_C PF03947.13 gi|305662567|ref|YP_003858855.1| - 2.4e-44 150.3 1.3 3.7e-44 149.6 0.2 1.7 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|305662567|ref|YP_003858855.1| - 2.2e-13 49.9 0.0 6.7e-13 48.4 0.0 1.9 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Aconitase_2_N PF06434.8 gi|305662567|ref|YP_003858855.1| - 0.038 13.4 0.2 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Aconitate hydratase 2 N-terminus Ribosomal_S19 PF00203.16 gi|305662568|ref|YP_003858856.1| - 6.3e-27 93.0 0.9 8.6e-27 92.5 0.4 1.4 2 0 0 2 2 2 1 Ribosomal protein S19 AsiA PF09010.5 gi|305662568|ref|YP_003858856.1| - 0.024 14.5 0.3 0.1 12.4 0.1 1.9 1 1 1 2 2 2 0 Anti-Sigma Factor A SKI PF01202.17 gi|305662568|ref|YP_003858856.1| - 0.073 12.9 0.0 0.097 12.5 0.0 1.1 1 0 0 1 1 1 0 Shikimate kinase Ribosomal_L23 PF00276.15 gi|305662570|ref|YP_003858858.1| - 2.9e-12 46.3 4.0 4.6e-12 45.7 2.8 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 Spore_III_AF PF09581.5 gi|305662570|ref|YP_003858858.1| - 0.013 15.3 1.0 0.015 15.1 0.7 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AF (Spore_III_AF) DUF3335 PF11814.3 gi|305662570|ref|YP_003858858.1| - 0.016 14.3 0.2 0.018 14.2 0.1 1.1 1 0 0 1 1 1 0 Peptidase_C39 like family DnaJ PF00226.26 gi|305662570|ref|YP_003858858.1| - 0.04 13.6 0.4 9.2 6.0 0.0 2.3 1 1 1 2 2 2 0 DnaJ domain Hydrolase_3 PF08282.7 gi|305662570|ref|YP_003858858.1| - 0.071 12.6 0.6 0.078 12.5 0.4 1.0 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase Toprim_2 PF13155.1 gi|305662570|ref|YP_003858858.1| - 0.088 13.1 0.1 0.11 12.8 0.0 1.1 1 0 0 1 1 1 0 Toprim-like DDE_Tnp_IS1595 PF12762.2 gi|305662570|ref|YP_003858858.1| - 0.098 12.4 0.3 0.11 12.3 0.2 1.2 1 1 0 1 1 1 0 ISXO2-like transposase domain Orthopox_B11R PF07033.6 gi|305662570|ref|YP_003858858.1| - 0.1 12.1 0.4 0.13 11.7 0.3 1.3 1 0 0 1 1 1 0 Orthopoxvirus B11R protein YbfN PF13982.1 gi|305662570|ref|YP_003858858.1| - 0.11 12.6 0.3 0.14 12.3 0.2 1.2 1 0 0 1 1 1 0 YbfN-like lipoprotein Ribosomal_L4 PF00573.17 gi|305662571|ref|YP_003858859.1| - 4.8e-36 123.9 0.0 5.6e-36 123.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|305662572|ref|YP_003858860.1| - 7.5e-62 209.0 0.1 8.8e-62 208.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 DUF3461 PF11944.3 gi|305662574|ref|YP_003858862.1| - 0.028 14.2 0.2 0.034 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3461) IFNGR1 PF07140.6 gi|305662574|ref|YP_003858862.1| - 0.32 10.6 3.1 6.7 6.4 0.2 2.0 1 1 1 2 2 2 0 Interferon gamma receptor (IFNGR1) RhodobacterPufX PF11511.3 gi|305662576|ref|YP_003858864.1| - 0.034 13.5 0.8 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 Intrinsic membrane protein PufX EI24 PF07264.6 gi|305662576|ref|YP_003858864.1| - 0.66 9.3 5.7 0.84 9.0 4.0 1.1 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Rab5ip PF07019.7 gi|305662576|ref|YP_003858864.1| - 3.1 7.9 6.5 1.1 9.3 1.1 2.0 2 0 0 2 2 2 0 Rab5-interacting protein (Rab5ip) DEAD PF00270.24 gi|305662577|ref|YP_003858865.1| - 2.5e-29 101.9 0.2 8.9e-29 100.1 0.0 2.0 2 0 0 2 2 2 1 DEAD/DEAH box helicase DEAD_assoc PF08494.6 gi|305662577|ref|YP_003858865.1| - 9.7e-21 74.3 0.0 3.3e-20 72.6 0.0 1.8 1 0 0 1 1 1 1 DEAD/H associated Helicase_C PF00271.26 gi|305662577|ref|YP_003858865.1| - 3.4e-17 62.0 2.2 2.9e-15 55.8 0.1 3.5 4 0 0 4 4 4 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|305662577|ref|YP_003858865.1| - 0.0029 17.3 0.0 0.12 12.1 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain ResIII PF04851.10 gi|305662577|ref|YP_003858865.1| - 0.0038 17.0 0.0 0.01 15.6 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|305662577|ref|YP_003858865.1| - 0.006 15.9 2.2 0.68 9.1 0.0 3.2 2 1 1 3 3 3 1 UvrD/REP helicase N-terminal domain HypA PF01155.14 gi|305662577|ref|YP_003858865.1| - 0.006 16.2 0.6 0.024 14.3 0.2 2.0 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family DUF2540 PF10802.3 gi|305662577|ref|YP_003858865.1| - 1.1 8.9 14.7 0.088 12.4 0.4 4.6 4 0 0 4 4 4 0 Protein of unknown function (DUF2540) DUF1469 PF07332.6 gi|305662578|ref|YP_003858866.1| - 0.26 11.0 2.2 0.26 11.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) TMCO5 PF14992.1 gi|305662578|ref|YP_003858866.1| - 7.4 5.6 6.4 13 4.7 4.5 1.4 1 0 0 1 1 1 0 TMCO5 family RtcB PF01139.12 gi|305662579|ref|YP_003858867.1| - 9.3e-147 489.3 0.0 1.1e-146 489.2 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB UPF0175 PF03683.8 gi|305662579|ref|YP_003858867.1| - 0.085 12.3 0.0 0.27 10.7 0.0 1.9 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) Pribosyltran PF00156.22 gi|305662580|ref|YP_003858868.1| - 9.1e-18 64.1 0.0 1.5e-17 63.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|305662580|ref|YP_003858868.1| - 0.039 13.1 0.0 0.061 12.5 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase AAA_25 PF13481.1 gi|305662581|ref|YP_003858869.1| - 3.3e-07 29.9 0.0 4.4e-07 29.5 0.0 1.1 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|305662581|ref|YP_003858869.1| - 0.00013 21.0 0.1 0.00031 19.7 0.1 1.7 1 1 0 1 1 1 1 Rad51 AAA_22 PF13401.1 gi|305662581|ref|YP_003858869.1| - 0.00014 22.0 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|305662581|ref|YP_003858869.1| - 0.0017 18.0 0.2 0.0098 15.6 0.0 2.0 1 1 1 2 2 2 1 Archaeal ATPase KaiC PF06745.8 gi|305662581|ref|YP_003858869.1| - 0.0019 17.3 0.9 0.014 14.4 0.6 2.0 1 1 0 1 1 1 1 KaiC Pox_A32 PF04665.7 gi|305662581|ref|YP_003858869.1| - 0.0031 16.8 2.5 0.03 13.6 0.0 2.6 2 1 1 3 3 3 1 Poxvirus A32 protein DAP3 PF10236.4 gi|305662581|ref|YP_003858869.1| - 0.013 14.5 0.0 0.99 8.2 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 NB-ARC PF00931.17 gi|305662581|ref|YP_003858869.1| - 0.063 12.1 0.0 0.074 11.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA PF00004.24 gi|305662581|ref|YP_003858869.1| - 0.063 13.4 0.0 0.1 12.8 0.0 1.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|305662581|ref|YP_003858869.1| - 0.068 12.5 0.1 2.4 7.5 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain cobW PF02492.14 gi|305662581|ref|YP_003858869.1| - 0.079 12.4 0.1 0.19 11.1 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF2671 PF10877.3 gi|305662581|ref|YP_003858869.1| - 0.081 12.7 0.8 0.27 11.0 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2671) NACHT PF05729.7 gi|305662581|ref|YP_003858869.1| - 0.12 12.0 0.0 0.17 11.5 0.0 1.5 1 1 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|305662581|ref|YP_003858869.1| - 0.12 11.8 0.0 0.54 9.8 0.0 2.0 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|305662581|ref|YP_003858869.1| - 0.16 11.9 0.1 0.36 10.7 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain Viral_helicase1 PF01443.13 gi|305662581|ref|YP_003858869.1| - 0.17 11.3 0.0 0.39 10.2 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.1 gi|305662581|ref|YP_003858869.1| - 0.41 10.5 2.3 0.51 10.2 0.6 1.9 2 1 0 2 2 2 0 AAA domain Nop10p PF04135.7 gi|305662582|ref|YP_003858870.1| - 1.2e-23 82.5 3.3 1.5e-23 82.2 2.3 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family RecR PF02132.10 gi|305662582|ref|YP_003858870.1| - 1.3e-06 27.7 0.5 2e-06 27.1 0.4 1.3 1 0 0 1 1 1 1 RecR protein zf-rbx1 PF12678.2 gi|305662582|ref|YP_003858870.1| - 0.091 12.8 0.9 0.13 12.3 0.7 1.4 1 1 0 1 1 1 0 RING-H2 zinc finger zf-C3HC4_3 PF13920.1 gi|305662582|ref|YP_003858870.1| - 0.31 10.7 7.2 39 4.0 5.0 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Auto_anti-p27 PF06677.7 gi|305662582|ref|YP_003858870.1| - 0.32 10.8 3.1 1.9 8.2 0.1 2.5 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2H2_4 PF13894.1 gi|305662582|ref|YP_003858870.1| - 0.37 11.2 2.4 21 5.7 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DUF329 PF03884.9 gi|305662582|ref|YP_003858870.1| - 0.47 10.0 6.8 3 7.4 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-C4H2 PF10146.4 gi|305662582|ref|YP_003858870.1| - 0.66 9.9 4.4 0.91 9.4 3.0 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein Prok-RING_4 PF14447.1 gi|305662582|ref|YP_003858870.1| - 0.92 9.1 5.5 3.8 7.1 0.4 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 TF_Zn_Ribbon PF08271.7 gi|305662582|ref|YP_003858870.1| - 1.3 8.3 4.5 4.3 6.7 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Cys_rich_KTR PF14205.1 gi|305662582|ref|YP_003858870.1| - 1.8 8.0 8.0 2.7 7.5 0.8 2.2 1 1 1 2 2 2 0 Cysteine-rich KTR zf-P11 PF03854.9 gi|305662582|ref|YP_003858870.1| - 2.5 7.6 6.6 36 3.9 4.6 2.1 1 1 1 2 2 2 0 P-11 zinc finger zf-RING_5 PF14634.1 gi|305662582|ref|YP_003858870.1| - 2.6 7.8 6.1 89 2.9 4.2 2.2 1 1 0 1 1 1 0 zinc-RING finger domain zf-FPG_IleRS PF06827.9 gi|305662582|ref|YP_003858870.1| - 2.9 7.6 6.0 10 5.8 3.7 2.0 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-C2HC_2 PF13913.1 gi|305662582|ref|YP_003858870.1| - 3.9 7.2 8.6 1.4 8.6 0.9 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-RING_2 PF13639.1 gi|305662582|ref|YP_003858870.1| - 6.4 6.6 7.1 4e+02 0.9 5.0 2.3 1 1 1 2 2 2 0 Ring finger domain EIF_2_alpha PF07541.7 gi|305662583|ref|YP_003858871.1| - 5.3e-24 84.1 1.4 8.6e-24 83.4 0.1 1.9 2 1 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|305662583|ref|YP_003858871.1| - 6e-11 42.2 3.0 8.1e-11 41.8 0.7 2.1 2 1 0 2 2 2 1 S1 RNA binding domain EXOSC1 PF10447.4 gi|305662583|ref|YP_003858871.1| - 1.9e-06 27.7 1.2 0.0018 18.2 0.0 2.9 2 1 0 2 2 2 2 Exosome component EXOSC1/CSL4 TRAM PF01938.15 gi|305662583|ref|YP_003858871.1| - 0.044 13.5 0.1 0.34 10.7 0.0 2.4 2 0 0 2 2 2 0 TRAM domain Ribosomal_S27e PF01667.12 gi|305662584|ref|YP_003858872.1| - 1e-20 72.9 0.9 1.1e-20 72.8 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|305662584|ref|YP_003858872.1| - 0.00038 19.7 2.5 0.00062 19.0 1.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|305662584|ref|YP_003858872.1| - 0.0015 17.8 5.3 0.18 11.2 0.2 2.2 2 0 0 2 2 2 2 Desulfoferrodoxin, N-terminal domain HypA PF01155.14 gi|305662584|ref|YP_003858872.1| - 0.0065 16.1 0.1 0.0071 16.0 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zinc_ribbon_5 PF13719.1 gi|305662584|ref|YP_003858872.1| - 0.023 14.2 1.1 3.6 7.2 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_N PF01194.12 gi|305662584|ref|YP_003858872.1| - 0.03 14.3 1.7 0.086 12.8 0.1 2.0 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit zf-Sec23_Sec24 PF04810.10 gi|305662584|ref|YP_003858872.1| - 0.042 13.4 1.5 6 6.5 0.1 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger zinc_ribbon_4 PF13717.1 gi|305662584|ref|YP_003858872.1| - 0.048 13.3 1.6 3.7 7.3 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|305662584|ref|YP_003858872.1| - 0.052 13.8 0.2 0.065 13.5 0.1 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-BED PF02892.10 gi|305662584|ref|YP_003858872.1| - 0.062 13.0 0.2 7 6.5 0.1 2.2 2 0 0 2 2 2 0 BED zinc finger zf-FPG_IleRS PF06827.9 gi|305662584|ref|YP_003858872.1| - 0.074 12.7 0.4 8.3 6.1 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF4428 PF14471.1 gi|305662584|ref|YP_003858872.1| - 0.18 11.5 0.9 1 9.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) zinc_ribbon_2 PF13240.1 gi|305662584|ref|YP_003858872.1| - 0.2 11.1 2.0 1.3 8.5 1.5 2.0 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|305662584|ref|YP_003858872.1| - 0.21 11.2 4.1 0.44 10.2 0.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-RanBP PF00641.13 gi|305662584|ref|YP_003858872.1| - 0.3 10.2 2.7 2.8 7.1 0.3 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Prok-RING_1 PF14446.1 gi|305662584|ref|YP_003858872.1| - 0.3 10.8 1.7 0.57 9.9 1.2 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 ZZ PF00569.12 gi|305662584|ref|YP_003858872.1| - 0.58 9.7 2.3 1.2 8.7 1.6 1.6 1 1 0 1 1 1 0 Zinc finger, ZZ type zf-ribbon_3 PF13248.1 gi|305662584|ref|YP_003858872.1| - 0.71 9.1 4.1 5.1 6.4 0.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.14 gi|305662585|ref|YP_003858873.1| - 3.9e-28 97.2 12.5 6e-28 96.6 8.6 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 Mu-like_Com PF10122.4 gi|305662585|ref|YP_003858873.1| - 4.1e-05 22.5 3.7 0.0077 15.2 0.3 2.2 2 0 0 2 2 2 2 Mu-like prophage protein Com Lar_restr_allev PF14354.1 gi|305662585|ref|YP_003858873.1| - 0.0033 17.6 0.6 1.5 9.1 0.0 2.1 1 1 1 2 2 2 2 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|305662585|ref|YP_003858873.1| - 0.0065 15.6 0.3 2.3 7.5 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|305662585|ref|YP_003858873.1| - 0.013 15.5 7.6 0.052 13.5 1.2 2.6 2 1 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|305662585|ref|YP_003858873.1| - 0.015 14.7 2.3 0.064 12.7 0.3 2.4 2 0 0 2 2 2 0 InsA N-terminal domain Joubert PF15392.1 gi|305662585|ref|YP_003858873.1| - 0.039 13.1 1.2 0.04 13.1 0.8 1.0 1 0 0 1 1 1 0 Joubert syndrome-associated zinc_ribbon_4 PF13717.1 gi|305662585|ref|YP_003858873.1| - 0.049 13.3 5.5 0.23 11.1 0.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305662585|ref|YP_003858873.1| - 0.056 12.9 2.7 5.2 6.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305662585|ref|YP_003858873.1| - 0.06 12.9 5.7 0.27 10.8 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF866 PF05907.8 gi|305662585|ref|YP_003858873.1| - 0.06 12.8 1.0 0.17 11.3 0.2 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF866) Yippee-Mis18 PF03226.9 gi|305662585|ref|YP_003858873.1| - 0.063 13.3 0.3 0.077 13.0 0.2 1.2 1 0 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2387 PF09526.5 gi|305662585|ref|YP_003858873.1| - 0.073 12.9 1.6 4 7.4 0.1 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) T4_baseplate PF12322.3 gi|305662585|ref|YP_003858873.1| - 0.084 12.1 1.7 0.32 10.2 0.1 1.9 2 0 0 2 2 2 0 T4 bacteriophage base plate protein RecR PF02132.10 gi|305662585|ref|YP_003858873.1| - 0.13 11.7 1.1 9.2 5.7 0.2 2.2 2 0 0 2 2 2 0 RecR protein RNA_POL_M_15KD PF02150.11 gi|305662585|ref|YP_003858873.1| - 0.15 11.7 0.8 0.94 9.2 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Auto_anti-p27 PF06677.7 gi|305662585|ref|YP_003858873.1| - 0.23 11.2 1.7 12 5.7 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) OrfB_Zn_ribbon PF07282.6 gi|305662585|ref|YP_003858873.1| - 0.25 11.0 2.1 3.3 7.4 0.2 2.3 2 1 1 3 3 2 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.9 gi|305662585|ref|YP_003858873.1| - 0.32 10.6 2.8 0.5 10.0 0.2 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|305662585|ref|YP_003858873.1| - 0.52 10.1 4.4 2.3 8.0 3.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon Tnp_zf-ribbon_2 PF13842.1 gi|305662585|ref|YP_003858873.1| - 1.5 9.2 7.5 7.8 6.9 0.3 2.5 2 1 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DM PF00751.13 gi|305662585|ref|YP_003858873.1| - 1.6 8.2 7.2 6.3 6.4 0.1 2.4 2 1 0 2 2 2 0 DM DNA binding domain zf-CCHC_5 PF14787.1 gi|305662585|ref|YP_003858873.1| - 3.9 7.0 6.0 2.8 7.4 0.2 2.4 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger DNA_primase_S PF01896.14 gi|305662587|ref|YP_003858875.1| - 2.2e-13 50.2 8.1 1e-12 48.0 3.1 2.7 2 1 0 2 2 2 1 Eukaryotic and archaeal DNA primase small subunit DZR PF12773.2 gi|305662587|ref|YP_003858875.1| - 0.0022 17.7 4.4 0.0045 16.7 3.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662587|ref|YP_003858875.1| - 0.013 14.6 7.0 0.013 14.6 4.8 1.9 1 1 2 3 3 3 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|305662587|ref|YP_003858875.1| - 0.038 13.7 0.3 0.095 12.5 0.2 1.6 1 0 0 1 1 1 0 Ribosomal protein L37e UPF0547 PF10571.4 gi|305662587|ref|YP_003858875.1| - 0.053 13.2 2.8 4.4 7.0 0.2 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Spt4 PF06093.8 gi|305662587|ref|YP_003858875.1| - 0.057 13.3 1.0 0.12 12.2 0.7 1.6 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Thioredoxin_3 PF13192.1 gi|305662587|ref|YP_003858875.1| - 0.081 12.7 0.4 6.3 6.6 0.0 3.1 3 0 0 3 3 3 0 Thioredoxin domain Zn_Tnp_IS91 PF14319.1 gi|305662587|ref|YP_003858875.1| - 0.1 12.1 0.8 0.43 10.1 0.3 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-C3HC4_2 PF13923.1 gi|305662587|ref|YP_003858875.1| - 0.63 10.1 3.9 1.3 9.1 2.7 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Chordopox_A30L PF06015.7 gi|305662587|ref|YP_003858875.1| - 3.6 7.2 7.5 0.31 10.6 1.0 2.5 3 0 0 3 3 3 0 Chordopoxvirus A30L protein PCNA_N PF00705.13 gi|305662588|ref|YP_003858876.1| - 4e-14 52.1 0.0 1.2e-13 50.6 0.0 1.6 2 0 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|305662588|ref|YP_003858876.1| - 4e-06 26.7 0.1 8.4e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad1 PF02144.11 gi|305662588|ref|YP_003858876.1| - 0.00097 17.9 0.4 0.019 13.7 0.1 2.0 1 1 1 2 2 2 2 Repair protein Rad1/Rec1/Rad17 Rad9 PF04139.8 gi|305662588|ref|YP_003858876.1| - 0.0036 16.4 0.0 0.005 15.9 0.0 1.3 1 0 0 1 1 1 1 Rad9 HVSL PF09749.4 gi|305662589|ref|YP_003858877.1| - 0.073 12.0 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein DUF72 PF01904.13 gi|305662591|ref|YP_003858879.1| - 1.2e-38 133.1 0.0 1.4e-38 132.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.19 gi|305662591|ref|YP_003858879.1| - 0.036 13.3 0.1 0.094 11.9 0.0 1.6 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel Antitoxin-MazE PF04014.13 gi|305662592|ref|YP_003858880.1| - 1e-09 37.8 0.2 1.5e-09 37.3 0.1 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MraZ PF02381.13 gi|305662592|ref|YP_003858880.1| - 0.0035 17.0 0.0 0.0061 16.2 0.0 1.5 1 0 0 1 1 1 1 MraZ protein PCNA_C PF02747.10 gi|305662593|ref|YP_003858881.1| - 1.3e-08 34.7 0.0 3.1e-08 33.6 0.0 1.6 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.13 gi|305662593|ref|YP_003858881.1| - 6.2e-08 32.2 0.1 2e-07 30.5 0.0 1.8 3 0 0 3 3 3 1 Proliferating cell nuclear antigen, N-terminal domain RNA_pol_Rpo13 PF12136.3 gi|305662595|ref|YP_003858883.1| - 2.4e-08 33.5 1.6 2.4e-08 33.5 1.1 1.8 2 0 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain Ribosomal_L22 PF00237.14 gi|305662596|ref|YP_003858884.1| - 2.3e-32 111.0 0.1 2.7e-32 110.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.15 gi|305662597|ref|YP_003858885.1| - 6.6e-16 58.3 0.1 1.3e-15 57.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.12 gi|305662597|ref|YP_003858885.1| - 1.2e-12 47.2 0.0 3.5e-12 45.7 0.0 1.8 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|305662597|ref|YP_003858885.1| - 5.7e-05 22.6 0.1 0.00012 21.5 0.1 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.24 gi|305662597|ref|YP_003858885.1| - 0.14 11.7 0.8 0.28 10.8 0.2 1.8 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|305662598|ref|YP_003858886.1| - 1.3e-20 72.7 3.9 1.5e-20 72.5 2.7 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Enkurin PF13864.1 gi|305662598|ref|YP_003858886.1| - 0.026 14.7 0.2 0.027 14.6 0.2 1.2 1 0 0 1 1 1 0 Calmodulin-binding GIDA_assoc_3 PF13932.1 gi|305662598|ref|YP_003858886.1| - 0.14 12.2 0.4 0.22 11.5 0.3 1.5 1 1 0 1 1 1 0 GidA associated domain 3 UPF0086 PF01868.11 gi|305662599|ref|YP_003858887.1| - 3.2e-26 90.7 0.0 3.5e-26 90.6 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|305662600|ref|YP_003858888.1| - 8.4e-23 80.1 0.4 1.1e-22 79.8 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|305662601|ref|YP_003858889.1| - 1.1e-37 128.4 0.1 1.3e-37 128.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|305662602|ref|YP_003858890.1| - 1.8e-07 30.5 2.8 3.7e-07 29.5 2.0 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_S4e PF00900.15 gi|305662603|ref|YP_003858891.1| - 5.7e-25 86.7 0.1 1e-24 85.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|305662603|ref|YP_003858891.1| - 2.3e-17 62.5 3.5 4.1e-17 61.7 2.5 1.5 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|305662603|ref|YP_003858891.1| - 1.7e-09 36.9 0.0 6.2e-09 35.1 0.0 2.0 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|305662603|ref|YP_003858891.1| - 0.013 15.2 0.2 0.013 15.2 0.2 2.5 3 0 0 3 3 3 0 KOW motif Ribosomal_L5_C PF00673.16 gi|305662604|ref|YP_003858892.1| - 1.6e-23 82.2 0.0 4.3e-23 80.8 0.0 1.7 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|305662604|ref|YP_003858892.1| - 8.2e-18 63.9 0.1 1.6e-17 63.0 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.16 gi|305662605|ref|YP_003858893.1| - 6e-17 60.7 4.8 6.4e-17 60.6 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Zn_Tnp_IS1595 PF12760.2 gi|305662605|ref|YP_003858893.1| - 0.038 13.8 3.0 0.047 13.4 2.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-C4pol PF14260.1 gi|305662605|ref|YP_003858893.1| - 0.056 13.4 0.9 1.6 8.7 0.8 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|305662605|ref|YP_003858893.1| - 0.061 13.1 0.2 0.09 12.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|305662605|ref|YP_003858893.1| - 0.072 12.7 6.0 0.32 10.6 4.2 1.9 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Prim_Zn_Ribbon PF08273.7 gi|305662605|ref|YP_003858893.1| - 0.077 13.0 3.7 0.39 10.8 0.3 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-P11 PF03854.9 gi|305662605|ref|YP_003858893.1| - 0.1 12.0 0.3 0.14 11.6 0.2 1.2 1 0 0 1 1 1 0 P-11 zinc finger zf-AD PF07776.10 gi|305662605|ref|YP_003858893.1| - 0.11 12.4 2.7 0.56 10.2 0.1 2.0 1 1 1 2 2 2 0 Zinc-finger associated domain (zf-AD) Ribosomal_L37ae PF01780.14 gi|305662605|ref|YP_003858893.1| - 0.11 12.3 0.8 0.14 12.0 0.6 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_Tnp_IS91 PF14319.1 gi|305662605|ref|YP_003858893.1| - 0.12 11.9 0.4 0.12 11.8 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain UPF0547 PF10571.4 gi|305662605|ref|YP_003858893.1| - 0.2 11.3 1.4 6.3 6.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_L40e PF01020.12 gi|305662605|ref|YP_003858893.1| - 4.9 6.8 8.7 1.1 8.8 0.6 2.5 1 1 1 2 2 2 0 Ribosomal L40e family Ribosomal_S8 PF00410.14 gi|305662606|ref|YP_003858894.1| - 4.5e-27 94.4 0.0 5.8e-27 94.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|305662607|ref|YP_003858895.1| - 1.2e-28 99.3 4.5 1e-16 61.1 0.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 Ribosomal_L32e PF01655.13 gi|305662608|ref|YP_003858896.1| - 8.5e-34 115.9 0.3 1.3e-33 115.3 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L32 Ribosomal_L19e PF01280.15 gi|305662609|ref|YP_003858897.1| - 3.9e-56 188.9 7.5 4.4e-56 188.7 5.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e HTH_17 PF12728.2 gi|305662609|ref|YP_003858897.1| - 2.8 8.2 10.4 3.6 7.9 0.1 3.8 4 1 0 4 4 4 0 Helix-turn-helix domain Ribosomal_L18p PF00861.17 gi|305662610|ref|YP_003858898.1| - 3.2e-30 104.7 0.1 4.1e-30 104.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L18_c PF14204.1 gi|305662610|ref|YP_003858898.1| - 3.7e-09 37.0 0.9 6.6e-09 36.2 0.0 1.7 2 0 0 2 2 2 1 Ribosomal L18 C-terminal region Ribosomal_S5 PF00333.15 gi|305662611|ref|YP_003858899.1| - 1.1e-24 85.9 2.4 2e-24 85.1 1.3 1.8 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|305662611|ref|YP_003858899.1| - 2.1e-21 74.9 0.0 3.9e-21 74.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|305662612|ref|YP_003858900.1| - 5.6e-17 61.0 0.0 1.1e-16 60.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|305662613|ref|YP_003858901.1| - 7.6e-30 103.9 0.6 9.6e-30 103.6 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|305662614|ref|YP_003858902.1| - 8.6e-74 248.5 30.3 8.6e-74 248.5 21.0 1.5 1 1 1 2 2 2 1 SecY translocase YuiB PF14068.1 gi|305662615|ref|YP_003858903.1| - 2.2 8.6 8.5 0.057 13.7 1.4 1.6 2 0 0 2 2 2 0 Putative membrane protein Ribosomal_L34e PF01199.13 gi|305662616|ref|YP_003858904.1| - 2.3e-27 95.0 3.5 2.5e-27 94.9 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e zf-TFIIB PF13453.1 gi|305662616|ref|YP_003858904.1| - 0.017 14.3 0.5 0.77 9.0 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Tnp_zf-ribbon_2 PF13842.1 gi|305662616|ref|YP_003858904.1| - 0.091 13.1 0.4 0.41 11.0 0.0 2.0 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF3133 PF11331.3 gi|305662616|ref|YP_003858904.1| - 0.13 11.8 0.6 0.34 10.4 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) Mut7-C PF01927.11 gi|305662616|ref|YP_003858904.1| - 0.14 12.1 0.1 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Mut7-C RNAse domain zf-Sec23_Sec24 PF04810.10 gi|305662616|ref|YP_003858904.1| - 0.31 10.6 1.8 0.53 9.8 0.1 2.0 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Cytidylate_kin2 PF13189.1 gi|305662617|ref|YP_003858905.1| - 1.2e-22 80.6 0.3 1.6e-20 73.7 0.2 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|305662617|ref|YP_003858905.1| - 4.3e-20 72.3 0.2 7.2e-20 71.6 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305662617|ref|YP_003858905.1| - 8.1e-16 58.9 0.3 1.1e-15 58.5 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|305662617|ref|YP_003858905.1| - 8.7e-07 28.9 0.1 5.9e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|305662617|ref|YP_003858905.1| - 1.1e-06 28.5 0.2 2e-06 27.7 0.0 1.6 2 0 0 2 2 1 1 Adenylate kinase SKI PF01202.17 gi|305662617|ref|YP_003858905.1| - 2.1e-06 27.6 0.3 1.7e-05 24.7 0.2 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|305662617|ref|YP_003858905.1| - 3e-05 23.6 0.5 0.00014 21.5 0.0 2.2 2 1 0 2 2 2 1 Part of AAA domain AAA PF00004.24 gi|305662617|ref|YP_003858905.1| - 8.7e-05 22.7 0.0 0.00013 22.1 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|305662617|ref|YP_003858905.1| - 0.00019 20.5 0.1 0.00038 19.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin PRK PF00485.13 gi|305662617|ref|YP_003858905.1| - 0.0016 18.0 0.4 0.0097 15.4 0.0 2.2 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family NTPase_1 PF03266.10 gi|305662617|ref|YP_003858905.1| - 0.002 17.8 0.1 0.0045 16.7 0.0 1.6 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.1 gi|305662617|ref|YP_003858905.1| - 0.0026 17.9 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|305662617|ref|YP_003858905.1| - 0.0046 16.6 0.0 0.0082 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) CoaE PF01121.15 gi|305662617|ref|YP_003858905.1| - 0.0057 16.0 0.4 2.1 7.7 0.0 2.2 2 0 0 2 2 2 2 Dephospho-CoA kinase RuvB_N PF05496.7 gi|305662617|ref|YP_003858905.1| - 0.0083 15.1 0.0 0.016 14.2 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Thymidylate_kin PF02223.12 gi|305662617|ref|YP_003858905.1| - 0.0093 15.3 0.3 0.07 12.5 0.0 2.0 2 0 0 2 2 2 1 Thymidylate kinase ABC_tran PF00005.22 gi|305662617|ref|YP_003858905.1| - 0.01 16.1 0.2 0.014 15.7 0.1 1.5 1 1 0 1 1 1 0 ABC transporter AAA_16 PF13191.1 gi|305662617|ref|YP_003858905.1| - 0.012 15.6 0.1 0.02 14.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.1 gi|305662617|ref|YP_003858905.1| - 0.022 14.6 0.0 0.05 13.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|305662617|ref|YP_003858905.1| - 0.032 13.0 0.2 0.064 12.1 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.1 gi|305662617|ref|YP_003858905.1| - 0.038 13.5 0.0 0.08 12.5 0.0 1.6 2 0 0 2 2 1 0 AAA domain KTI12 PF08433.5 gi|305662617|ref|YP_003858905.1| - 0.039 13.1 0.0 0.062 12.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|305662617|ref|YP_003858905.1| - 0.039 12.8 0.1 0.084 11.7 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein Rad17 PF03215.10 gi|305662617|ref|YP_003858905.1| - 0.04 12.6 0.0 0.051 12.2 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|305662617|ref|YP_003858905.1| - 0.046 13.3 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|305662617|ref|YP_003858905.1| - 0.049 13.5 0.0 0.096 12.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain APS_kinase PF01583.15 gi|305662617|ref|YP_003858905.1| - 0.053 13.1 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.1 gi|305662617|ref|YP_003858905.1| - 0.053 13.0 0.1 0.1 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305662617|ref|YP_003858905.1| - 0.062 12.7 0.1 0.098 12.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain DUF87 PF01935.12 gi|305662617|ref|YP_003858905.1| - 0.084 12.6 0.8 3.2 7.5 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function DUF87 RNA_helicase PF00910.17 gi|305662617|ref|YP_003858905.1| - 0.087 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|305662617|ref|YP_003858905.1| - 0.097 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|305662617|ref|YP_003858905.1| - 0.14 11.8 0.2 0.45 10.2 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_11 PF13086.1 gi|305662617|ref|YP_003858905.1| - 0.15 11.5 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|305662617|ref|YP_003858905.1| - 0.19 12.0 1.8 0.89 9.8 1.2 1.9 1 1 0 1 1 1 0 AAA domain Ribosomal_L14e PF01929.12 gi|305662618|ref|YP_003858906.1| - 0.00076 19.7 0.1 0.0013 18.9 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L14 KOW PF00467.24 gi|305662618|ref|YP_003858906.1| - 0.002 17.7 0.4 0.0043 16.7 0.3 1.6 1 0 0 1 1 1 1 KOW motif XisI PF08869.6 gi|305662618|ref|YP_003858906.1| - 0.089 12.9 0.1 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 XisI protein DKCLD PF08068.7 gi|305662619|ref|YP_003858907.1| - 1e-18 66.9 0.4 1.3e-18 66.6 0.3 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3970 PF13113.1 gi|305662619|ref|YP_003858907.1| - 0.0079 15.8 0.1 0.017 14.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF3970) PUA PF01472.15 gi|305662620|ref|YP_003858908.1| - 3.2e-22 78.0 2.1 3.2e-22 78.0 1.4 2.0 2 0 0 2 2 2 1 PUA domain TruB_N PF01509.13 gi|305662620|ref|YP_003858908.1| - 5.4e-19 68.8 1.2 8.8e-08 32.4 0.0 3.5 2 1 1 3 3 3 2 TruB family pseudouridylate synthase (N terminal domain) MTS PF05175.9 gi|305662621|ref|YP_003858909.1| - 2.3e-45 154.0 0.0 2.7e-45 153.8 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|305662621|ref|YP_003858909.1| - 1.9e-15 56.7 0.0 2.3e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305662621|ref|YP_003858909.1| - 3.6e-15 56.0 0.0 5.1e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305662621|ref|YP_003858909.1| - 1.7e-12 47.8 0.0 2.4e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|305662621|ref|YP_003858909.1| - 1.1e-10 41.1 0.0 1.5e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|305662621|ref|YP_003858909.1| - 5.6e-08 32.3 0.0 7.3e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|305662621|ref|YP_003858909.1| - 1.4e-07 31.3 0.0 1.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_16 PF10294.4 gi|305662621|ref|YP_003858909.1| - 7.5e-07 28.7 0.0 1.2e-06 28.0 0.0 1.4 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_25 PF13649.1 gi|305662621|ref|YP_003858909.1| - 1e-05 25.8 0.0 1.5e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305662621|ref|YP_003858909.1| - 1.5e-05 25.4 0.0 2.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305662621|ref|YP_003858909.1| - 8.4e-05 22.9 0.0 0.00012 22.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|305662621|ref|YP_003858909.1| - 0.00021 20.8 0.0 0.00055 19.5 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|305662621|ref|YP_003858909.1| - 0.00023 20.9 0.0 0.00033 20.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|305662621|ref|YP_003858909.1| - 0.00025 20.2 0.0 0.00032 19.8 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.14 gi|305662621|ref|YP_003858909.1| - 0.00025 20.6 0.1 0.00042 19.9 0.0 1.4 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|305662621|ref|YP_003858909.1| - 0.00074 18.6 0.1 0.0018 17.3 0.0 1.6 2 0 0 2 2 2 1 Putative methyltransferase GidB PF02527.10 gi|305662621|ref|YP_003858909.1| - 0.0013 17.8 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G TehB PF03848.9 gi|305662621|ref|YP_003858909.1| - 0.0016 17.6 0.0 0.0022 17.1 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB FmrO PF07091.6 gi|305662621|ref|YP_003858909.1| - 0.0093 14.9 0.0 0.014 14.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) N6_N4_Mtase PF01555.13 gi|305662621|ref|YP_003858909.1| - 0.039 13.4 0.0 2.5 7.5 0.0 2.3 2 1 0 2 2 2 0 DNA methylase CMAS PF02353.15 gi|305662621|ref|YP_003858909.1| - 0.041 12.9 0.0 0.047 12.7 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase tRNA_U5-meth_tr PF05958.6 gi|305662621|ref|YP_003858909.1| - 0.054 12.1 0.0 0.1 11.2 0.0 1.6 2 0 0 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.1 gi|305662621|ref|YP_003858909.1| - 0.055 13.1 0.0 0.092 12.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305662621|ref|YP_003858909.1| - 0.06 12.8 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase DUF2322 PF10084.4 gi|305662621|ref|YP_003858909.1| - 0.087 12.5 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) Dam PF05869.6 gi|305662621|ref|YP_003858909.1| - 0.1 12.0 0.0 0.15 11.5 0.0 1.3 1 0 0 1 1 1 0 DNA N-6-adenine-methyltransferase (Dam) MetW PF07021.7 gi|305662621|ref|YP_003858909.1| - 0.12 11.7 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PIG-P PF08510.7 gi|305662623|ref|YP_003858911.1| - 0.028 14.0 0.1 0.054 13.1 0.1 1.4 1 0 0 1 1 1 0 PIG-P Peptidase_M10 PF00413.19 gi|305662625|ref|YP_003858913.1| - 3.1e-07 30.2 0.1 3.8e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 Matrixin Metallopep PF12044.3 gi|305662625|ref|YP_003858913.1| - 0.00027 19.5 0.1 0.00031 19.3 0.1 1.1 1 0 0 1 1 1 1 Putative peptidase family Peptidase_M66 PF10462.4 gi|305662625|ref|YP_003858913.1| - 0.0065 15.3 0.2 0.0078 15.1 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_4 PF13583.1 gi|305662625|ref|YP_003858913.1| - 0.0073 15.8 0.0 0.0078 15.7 0.0 1.0 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Astacin PF01400.19 gi|305662625|ref|YP_003858913.1| - 0.05 12.9 0.5 0.093 12.1 0.3 1.4 1 0 0 1 1 1 0 Astacin (Peptidase family M12A) Peptidase_M54 PF07998.6 gi|305662625|ref|YP_003858913.1| - 0.053 13.2 0.1 0.079 12.7 0.1 1.2 1 0 0 1 1 1 0 Peptidase family M54 Reprolysin_3 PF13582.1 gi|305662625|ref|YP_003858913.1| - 0.079 13.4 0.4 0.14 12.6 0.3 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|305662625|ref|YP_003858913.1| - 0.084 12.9 0.0 0.084 12.9 0.0 1.1 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like AAA_assoc_C PF09821.4 gi|305662627|ref|YP_003858915.1| - 4.3e-22 78.6 0.2 5.3e-22 78.3 0.2 1.1 1 0 0 1 1 1 1 C-terminal AAA-associated domain HemN_C PF06969.11 gi|305662627|ref|YP_003858915.1| - 0.057 13.4 0.2 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain DUF2042 PF09743.4 gi|305662627|ref|YP_003858915.1| - 0.062 12.6 1.9 0.35 10.1 0.1 2.1 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) RPN7 PF10602.4 gi|305662627|ref|YP_003858915.1| - 0.075 12.4 0.1 0.13 11.6 0.0 1.5 2 0 0 2 2 2 0 26S proteasome subunit RPN7 BPD_transp_1 PF00528.17 gi|305662628|ref|YP_003858916.1| - 7.8e-14 51.5 20.7 1.3e-13 50.9 14.4 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|305662629|ref|YP_003858917.1| - 8.3e-09 35.2 21.1 3e-08 33.3 5.9 2.2 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component ATP_synt_H PF05493.8 gi|305662629|ref|YP_003858917.1| - 0.12 12.4 7.4 0.18 11.9 2.1 2.6 1 1 1 2 2 2 0 ATP synthase subunit H MS_channel PF00924.13 gi|305662630|ref|YP_003858918.1| - 4.6e-19 68.5 9.2 4.6e-19 68.5 6.4 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel SieB PF14163.1 gi|305662630|ref|YP_003858918.1| - 0.042 13.4 3.2 0.072 12.6 2.2 1.5 1 0 0 1 1 1 0 Superinfection exclusion protein B Na_K-ATPase PF00287.13 gi|305662630|ref|YP_003858918.1| - 0.095 11.4 0.6 0.14 10.9 0.4 1.1 1 0 0 1 1 1 0 Sodium / potassium ATPase beta chain DUF4117 PF13491.1 gi|305662630|ref|YP_003858918.1| - 1.9 7.8 14.7 0.45 9.9 7.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4117) FtsX PF02687.16 gi|305662630|ref|YP_003858918.1| - 2.3 8.0 20.0 4.8 6.9 3.5 2.6 2 1 0 2 2 2 0 FtsX-like permease family PT-VENN PF04829.8 gi|305662630|ref|YP_003858918.1| - 5.6 6.6 7.7 14 5.3 5.4 1.6 1 0 0 1 1 1 0 Pre-toxin domain with VENN motif Gly-zipper_OmpA PF13436.1 gi|305662630|ref|YP_003858918.1| - 7.9 6.1 11.3 12 5.5 7.8 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain Ribosomal_S13 PF00416.17 gi|305662631|ref|YP_003858919.1| - 6.8e-28 97.2 0.0 8.9e-28 96.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 S4 PF01479.20 gi|305662632|ref|YP_003858920.1| - 1.7e-14 52.9 0.1 3.7e-14 51.8 0.0 1.6 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.14 gi|305662632|ref|YP_003858920.1| - 0.00032 21.0 3.1 0.00042 20.6 0.8 1.9 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Rotavirus_VP1 PF12289.3 gi|305662632|ref|YP_003858920.1| - 0.017 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Rotavirus VP1 structural protein Ribosomal_S11 PF00411.14 gi|305662633|ref|YP_003858921.1| - 2.4e-43 146.7 0.2 2.8e-43 146.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|305662634|ref|YP_003858922.1| - 1.6e-23 82.9 0.3 7.9e-23 80.7 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|305662634|ref|YP_003858922.1| - 4.5e-11 41.6 0.0 5.7e-11 41.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4 PF00037.22 gi|305662634|ref|YP_003858922.1| - 4.1e-10 38.8 11.7 3.7e-06 26.3 1.3 3.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|305662634|ref|YP_003858922.1| - 1.5e-08 34.3 23.6 8.6e-07 28.6 9.0 3.0 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|305662634|ref|YP_003858922.1| - 4.3e-08 33.4 14.0 0.00078 19.7 0.8 3.1 2 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305662634|ref|YP_003858922.1| - 9.3e-08 31.9 8.3 0.0032 17.4 0.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305662634|ref|YP_003858922.1| - 1.7e-07 31.4 12.8 1.7e-07 31.4 8.9 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305662634|ref|YP_003858922.1| - 3.4e-07 29.8 22.0 2.3e-05 24.0 1.2 3.9 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|305662634|ref|YP_003858922.1| - 1.6e-06 28.7 13.0 0.0011 19.7 0.4 2.9 4 0 0 4 4 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|305662634|ref|YP_003858922.1| - 1.8e-05 24.9 11.3 0.03 14.6 1.1 3.4 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305662634|ref|YP_003858922.1| - 4.6e-05 23.1 23.4 0.00026 20.7 9.0 2.9 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|305662634|ref|YP_003858922.1| - 6.2e-05 23.4 4.5 0.13 12.8 0.1 2.6 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_2 PF12797.2 gi|305662634|ref|YP_003858922.1| - 0.00027 20.6 21.4 0.0021 17.8 1.2 3.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|305662634|ref|YP_003858922.1| - 0.00035 20.9 21.3 0.0035 17.7 2.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|305662634|ref|YP_003858922.1| - 0.011 16.1 14.2 0.087 13.2 1.5 2.7 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|305662634|ref|YP_003858922.1| - 0.014 15.6 14.1 0.025 14.9 2.1 3.1 3 1 1 4 4 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|305662634|ref|YP_003858922.1| - 4.4 7.7 12.0 1.5e+02 2.9 8.3 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain Ribosomal_L18e PF00828.14 gi|305662635|ref|YP_003858923.1| - 3.2e-14 53.4 0.1 4.1e-14 53.0 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 Ribosomal_L13 PF00572.13 gi|305662636|ref|YP_003858924.1| - 1.4e-21 76.8 0.2 2.3e-21 76.1 0.1 1.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|305662637|ref|YP_003858925.1| - 3.3e-30 104.8 0.0 4.2e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S9/S16 RNA_pol_N PF01194.12 gi|305662638|ref|YP_003858926.1| - 6e-30 103.0 0.9 6.7e-30 102.9 0.6 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|305662638|ref|YP_003858926.1| - 0.016 15.2 0.1 0.023 14.7 0.1 1.2 1 0 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) SF3a60_bindingd PF12108.3 gi|305662638|ref|YP_003858926.1| - 0.07 12.6 0.5 0.12 11.9 0.4 1.3 1 0 0 1 1 1 0 Splicing factor SF3a60 binding domain Ribosomal_S2 PF00318.15 gi|305662639|ref|YP_003858927.1| - 5.2e-43 146.7 0.0 6.4e-22 77.8 0.0 2.0 1 1 1 2 2 2 2 Ribosomal protein S2 AA_kinase PF00696.23 gi|305662641|ref|YP_003858929.1| - 9.1e-38 130.1 0.0 1e-37 129.9 0.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family FMN_dh PF01070.13 gi|305662642|ref|YP_003858930.1| - 5.4e-27 94.5 0.2 3e-20 72.3 0.3 2.1 1 1 1 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|305662642|ref|YP_003858930.1| - 2.4e-05 23.4 1.2 2.4e-05 23.4 0.8 2.4 2 1 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain DeoC PF01791.4 gi|305662642|ref|YP_003858930.1| - 0.00036 19.8 2.4 0.00052 19.3 1.7 1.2 1 0 0 1 1 1 1 DeoC/LacD family aldolase NMO PF03060.10 gi|305662642|ref|YP_003858930.1| - 0.00054 19.2 0.6 0.0027 16.9 0.0 2.0 2 0 0 2 2 2 1 Nitronate monooxygenase Glu_synthase PF01645.12 gi|305662642|ref|YP_003858930.1| - 0.0009 18.2 4.7 0.0042 16.0 3.3 2.0 1 1 0 1 1 1 1 Conserved region in glutamate synthase Semialdhyde_dh PF01118.19 gi|305662642|ref|YP_003858930.1| - 0.096 12.9 0.0 0.25 11.6 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain UPF0146 PF03686.8 gi|305662642|ref|YP_003858930.1| - 0.67 9.7 4.3 1.9 8.3 0.5 2.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0146) polyprenyl_synt PF00348.12 gi|305662643|ref|YP_003858931.1| - 2.3e-63 213.4 0.2 3e-63 213.1 0.2 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Ubiq_cyt_C_chap PF03981.7 gi|305662643|ref|YP_003858931.1| - 0.043 13.6 0.0 13 5.6 0.0 2.5 2 1 0 2 2 2 0 Ubiquinol-cytochrome C chaperone ThiF PF00899.16 gi|305662643|ref|YP_003858931.1| - 0.088 12.6 0.0 0.27 11.0 0.0 1.8 1 1 0 1 1 1 0 ThiF family DUF2118 PF09891.4 gi|305662644|ref|YP_003858932.1| - 2.4e-12 46.7 0.9 2.7e-12 46.6 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) tRNA-synt_1c PF00749.16 gi|305662645|ref|YP_003858933.1| - 3.6e-69 232.8 0.0 5e-69 232.3 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|305662645|ref|YP_003858933.1| - 6.6e-21 74.7 0.0 1.5e-20 73.5 0.0 1.6 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Kdo_hydroxy PF11004.3 gi|305662645|ref|YP_003858933.1| - 0.078 11.9 0.1 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase Ribosomal_L7Ae PF01248.21 gi|305662646|ref|YP_003858934.1| - 1.4e-28 98.1 0.6 1.8e-28 97.9 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNase_P_pop3 PF08228.6 gi|305662646|ref|YP_003858934.1| - 0.011 15.6 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 0 RNase P subunit Pop3 Ribosomal_S28e PF01200.13 gi|305662647|ref|YP_003858935.1| - 6.9e-30 102.6 6.8 8.2e-30 102.3 4.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.24 gi|305662647|ref|YP_003858935.1| - 0.097 12.4 2.7 0.86 9.4 0.1 2.9 2 1 1 3 3 3 0 KOW motif Ribosomal_L24e PF01246.15 gi|305662648|ref|YP_003858936.1| - 1.4e-24 85.7 0.3 1.5e-24 85.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|305662648|ref|YP_003858936.1| - 5.3e-07 29.1 2.4 6.8e-07 28.8 1.6 1.1 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|305662648|ref|YP_003858936.1| - 0.0037 17.0 0.5 1.3 8.8 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF2175 PF09943.4 gi|305662648|ref|YP_003858936.1| - 0.027 14.5 0.1 0.028 14.4 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) zf-HIT PF04438.11 gi|305662648|ref|YP_003858936.1| - 0.067 12.8 4.8 3.1 7.5 3.3 2.1 1 1 0 1 1 1 0 HIT zinc finger DUF581 PF04570.9 gi|305662648|ref|YP_003858936.1| - 0.086 12.1 0.4 0.13 11.5 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF581) DUF3678 PF12435.3 gi|305662648|ref|YP_003858936.1| - 0.2 11.2 1.8 0.79 9.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) zf-C4_ClpX PF06689.8 gi|305662648|ref|YP_003858936.1| - 1 8.8 4.3 1.5 8.4 3.0 1.5 1 1 0 1 1 1 0 ClpX C4-type zinc finger GTP_EFTU PF00009.22 gi|305662649|ref|YP_003858937.1| - 5.1e-35 120.6 0.0 1.1e-34 119.5 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|305662649|ref|YP_003858937.1| - 6.3e-22 77.5 2.3 1.1e-21 76.7 0.8 2.1 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|305662649|ref|YP_003858937.1| - 1.5e-21 75.7 0.5 4.6e-21 74.2 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|305662649|ref|YP_003858937.1| - 1.6e-13 50.5 4.4 2.5e-10 40.3 0.1 2.8 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|305662649|ref|YP_003858937.1| - 2.3e-06 27.5 0.6 6.1e-06 26.1 0.1 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Miro PF08477.8 gi|305662649|ref|YP_003858937.1| - 2.9e-05 24.5 0.0 8.2e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 Miro-like protein Ras PF00071.17 gi|305662649|ref|YP_003858937.1| - 0.00083 18.7 0.0 0.0035 16.7 0.0 2.0 1 1 0 1 1 1 1 Ras family Dynamin_N PF00350.18 gi|305662649|ref|YP_003858937.1| - 0.013 15.3 0.1 0.16 11.8 0.0 2.3 2 0 0 2 2 2 0 Dynamin family PduV-EutP PF10662.4 gi|305662649|ref|YP_003858937.1| - 0.022 14.2 0.2 0.74 9.2 0.0 3.3 4 0 0 4 4 4 0 Ethanolamine utilisation - propanediol utilisation ATP_bind_1 PF03029.12 gi|305662649|ref|YP_003858937.1| - 0.051 13.0 0.0 0.27 10.7 0.0 2.0 1 1 0 2 2 2 0 Conserved hypothetical ATP binding protein Ribosomal_S6e PF01092.14 gi|305662650|ref|YP_003858938.1| - 1.1e-27 96.1 0.8 6.1e-27 93.7 0.2 2.1 2 0 0 2 2 2 1 Ribosomal protein S6e SSPI PF14098.1 gi|305662650|ref|YP_003858938.1| - 0.019 14.8 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Small, acid-soluble spore protein I GTP_EFTU PF00009.22 gi|305662651|ref|YP_003858939.1| - 1.4e-37 128.9 0.1 2.3e-37 128.2 0.1 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|305662651|ref|YP_003858939.1| - 7.5e-21 73.9 0.2 1.9e-20 72.7 0.2 1.7 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal MMR_HSR1 PF01926.18 gi|305662651|ref|YP_003858939.1| - 0.00072 19.4 0.0 0.0015 18.5 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|305662651|ref|YP_003858939.1| - 0.013 15.9 0.0 0.036 14.5 0.0 1.8 1 1 0 1 1 1 0 Miro-like protein GTP_EFTU_D2 PF03144.20 gi|305662651|ref|YP_003858939.1| - 0.017 15.1 3.9 0.046 13.8 2.7 1.8 1 0 0 1 1 1 0 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|305662651|ref|YP_003858939.1| - 0.018 14.5 4.9 0.11 11.9 0.1 2.5 3 0 0 3 3 3 0 Ethanolamine utilisation - propanediol utilisation Dynamin_N PF00350.18 gi|305662651|ref|YP_003858939.1| - 0.049 13.4 0.1 0.092 12.5 0.0 1.7 1 1 0 1 1 1 0 Dynamin family MobB PF03205.9 gi|305662651|ref|YP_003858939.1| - 0.074 12.7 0.1 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FeoB_N PF02421.13 gi|305662651|ref|YP_003858939.1| - 0.1 11.8 2.3 2.8 7.2 0.0 2.6 3 0 0 3 3 3 0 Ferrous iron transport protein B Fcf1 PF04900.7 gi|305662652|ref|YP_003858940.1| - 1.4e-06 28.3 0.0 1.9e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Fcf1 PIN_4 PF13638.1 gi|305662652|ref|YP_003858940.1| - 4.8e-06 26.7 2.0 0.00024 21.2 1.4 2.0 1 1 0 1 1 1 1 PIN domain CdhD PF03599.11 gi|305662652|ref|YP_003858940.1| - 0.0024 16.4 0.3 0.0031 16.0 0.1 1.3 1 1 0 1 1 1 1 CO dehydrogenase/acetyl-CoA synthase delta subunit BLYB PF05289.6 gi|305662652|ref|YP_003858940.1| - 0.026 14.3 1.4 0.034 13.9 0.8 1.3 1 1 0 1 1 1 0 Borrelia hemolysin accessory protein AAA_31 PF13614.1 gi|305662652|ref|YP_003858940.1| - 0.036 14.0 0.1 0.046 13.6 0.1 1.1 1 0 0 1 1 1 0 AAA domain S1 PF00575.18 gi|305662653|ref|YP_003858941.1| - 2.9e-13 49.7 1.4 5.9e-13 48.7 1.0 1.5 1 0 0 1 1 1 1 S1 RNA binding domain SHS2_Rpb7-N PF03876.12 gi|305662653|ref|YP_003858941.1| - 6.7e-13 48.5 0.0 1.4e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 RNA_pol_Rbc25 PF08292.7 gi|305662653|ref|YP_003858941.1| - 0.0033 17.6 0.0 0.0049 17.0 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase III subunit Rpc25 HCV_core PF01542.13 gi|305662653|ref|YP_003858941.1| - 0.009 16.3 2.0 0.24 11.7 0.1 2.3 1 1 1 2 2 2 1 Hepatitis C virus core protein Alba PF01918.16 gi|305662655|ref|YP_003858943.1| - 1.7e-20 72.3 0.8 2.6e-20 71.7 0.5 1.3 1 0 0 1 1 1 1 Alba Topoisom_bac PF01131.15 gi|305662656|ref|YP_003858944.1| - 3.8e-91 305.9 0.0 6.9e-91 305.0 0.0 1.4 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|305662656|ref|YP_003858944.1| - 6.4e-23 80.6 0.0 3.2e-22 78.3 0.0 2.3 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|305662656|ref|YP_003858944.1| - 2.9e-14 52.9 1.2 8.7e-13 48.1 0.0 3.9 4 2 0 5 5 5 1 DEAD/DEAH box helicase Toprim_4 PF13662.1 gi|305662656|ref|YP_003858944.1| - 0.0013 18.7 0.0 0.006 16.5 0.0 2.2 2 0 0 2 2 2 1 Toprim domain Helicase_RecD PF05127.9 gi|305662656|ref|YP_003858944.1| - 0.0016 18.1 0.0 0.0038 16.8 0.0 1.7 1 0 0 1 1 1 1 Helicase AAA_19 PF13245.1 gi|305662656|ref|YP_003858944.1| - 0.13 12.0 0.0 0.7 9.6 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain HypA PF01155.14 gi|305662656|ref|YP_003858944.1| - 0.5 10.0 1.5 12 5.6 0.0 2.7 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|305662656|ref|YP_003858944.1| - 0.53 10.1 4.9 9.8 6.0 0.3 2.3 2 0 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662656|ref|YP_003858944.1| - 1.2 8.4 9.3 4.3 6.6 1.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305662656|ref|YP_003858944.1| - 1.6 8.3 12.0 4.2 6.9 1.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|305662656|ref|YP_003858944.1| - 2.5 7.8 3.8 1.8 8.3 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Alba PF01918.16 gi|305662657|ref|YP_003858945.1| - 3e-06 26.7 0.0 3.9e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Alba LSM PF01423.17 gi|305662657|ref|YP_003858945.1| - 0.044 13.3 0.2 0.064 12.8 0.1 1.2 1 0 0 1 1 1 0 LSM domain Pribosyltran PF00156.22 gi|305662658|ref|YP_003858946.1| - 6.3e-24 84.0 1.1 1.1e-23 83.2 0.7 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|305662658|ref|YP_003858946.1| - 7.2e-05 22.0 0.1 0.00011 21.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Lip_prot_lig_C PF10437.4 gi|305662658|ref|YP_003858946.1| - 0.066 12.8 0.4 0.59 9.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Pribosyl_synth PF14572.1 gi|305662658|ref|YP_003858946.1| - 0.082 12.6 0.2 0.12 12.1 0.1 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Pox_A_type_inc PF04508.7 gi|305662659|ref|YP_003858947.1| - 3.6 7.6 5.5 1.1 9.2 0.1 2.5 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat AAA_21 PF13304.1 gi|305662661|ref|YP_003858949.1| - 2.1e-19 70.5 1.0 3.7e-17 63.2 0.2 2.8 2 1 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|305662661|ref|YP_003858949.1| - 3.9e-15 56.3 0.0 5.9e-15 55.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|305662661|ref|YP_003858949.1| - 1.2e-09 37.6 0.7 1.2e-07 31.1 0.5 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|305662661|ref|YP_003858949.1| - 7.4e-06 25.2 6.3 0.0008 18.5 0.1 2.2 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|305662661|ref|YP_003858949.1| - 0.0013 18.2 0.0 0.0025 17.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|305662661|ref|YP_003858949.1| - 0.0013 18.2 0.1 0.0017 17.8 0.1 1.3 1 1 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|305662661|ref|YP_003858949.1| - 0.0042 17.2 0.1 0.0076 16.4 0.0 1.7 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|305662661|ref|YP_003858949.1| - 0.0047 16.6 0.0 0.0084 15.8 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain AAA_23 PF13476.1 gi|305662661|ref|YP_003858949.1| - 0.0055 17.0 4.7 0.012 16.0 3.3 1.8 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|305662661|ref|YP_003858949.1| - 0.0078 15.8 0.0 0.017 14.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF258 PF03193.11 gi|305662661|ref|YP_003858949.1| - 0.011 14.9 0.1 0.019 14.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|305662661|ref|YP_003858949.1| - 0.013 15.1 0.5 0.028 14.1 0.2 1.8 1 1 0 1 1 1 0 Archaeal ATPase AAA_24 PF13479.1 gi|305662661|ref|YP_003858949.1| - 0.016 14.8 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|305662661|ref|YP_003858949.1| - 0.018 13.5 2.3 0.1 11.0 0.3 2.1 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|305662661|ref|YP_003858949.1| - 0.021 13.9 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.1 gi|305662661|ref|YP_003858949.1| - 0.026 14.3 0.3 0.084 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305662661|ref|YP_003858949.1| - 0.036 13.5 0.2 0.075 12.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|305662661|ref|YP_003858949.1| - 0.038 12.8 0.7 0.062 12.2 0.1 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|305662661|ref|YP_003858949.1| - 0.043 13.9 0.1 0.069 13.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|305662661|ref|YP_003858949.1| - 0.046 13.7 0.2 0.11 12.4 0.1 1.6 2 0 0 2 2 2 0 AAA ATPase domain Miro PF08477.8 gi|305662661|ref|YP_003858949.1| - 0.051 14.0 0.0 0.14 12.6 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|305662661|ref|YP_003858949.1| - 0.052 13.2 0.1 0.15 11.7 0.1 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF815 PF05673.8 gi|305662661|ref|YP_003858949.1| - 0.067 12.1 0.0 0.094 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_33 PF13671.1 gi|305662661|ref|YP_003858949.1| - 0.08 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|305662661|ref|YP_003858949.1| - 0.086 12.3 0.0 0.093 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|305662661|ref|YP_003858949.1| - 0.12 12.1 0.1 1.1 9.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|305662661|ref|YP_003858949.1| - 0.15 12.8 1.0 0.44 11.3 0.7 1.9 1 1 0 1 1 1 0 AAA domain Amidohydro_1 PF01979.15 gi|305662662|ref|YP_003858950.1| - 3.9e-05 23.4 0.0 0.011 15.3 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|305662662|ref|YP_003858950.1| - 0.00026 20.7 0.1 0.00049 19.8 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase PUA PF01472.15 gi|305662663|ref|YP_003858951.1| - 7.6e-13 48.0 0.4 1.1e-12 47.4 0.3 1.3 1 0 0 1 1 1 1 PUA domain DUF1947 PF09183.5 gi|305662663|ref|YP_003858951.1| - 1.1 9.0 5.6 4.9 6.9 3.7 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF1947) THUMP PF02926.12 gi|305662664|ref|YP_003858952.1| - 2.1e-05 24.4 0.1 3.2e-05 23.8 0.1 1.4 1 1 0 1 1 1 1 THUMP domain Cellulase PF00150.13 gi|305662665|ref|YP_003858953.1| - 3e-55 187.4 1.4 3.8e-55 187.0 0.9 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Peripla_BP_6 PF13458.1 gi|305662665|ref|YP_003858953.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Cation_efflux PF01545.16 gi|305662666|ref|YP_003858954.1| - 1.1e-37 129.6 21.4 1.3e-37 129.4 14.8 1.0 1 0 0 1 1 1 1 Cation efflux family Orbi_NS3 PF01616.11 gi|305662666|ref|YP_003858954.1| - 9.2 5.1 10.2 0.14 11.1 0.8 2.4 2 2 1 3 3 3 0 Orbivirus NS3 NikR_C PF08753.6 gi|305662667|ref|YP_003858955.1| - 7.2e-23 80.2 3.9 1.2e-22 79.5 2.7 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_3 PF12651.2 gi|305662667|ref|YP_003858955.1| - 0.046 13.4 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix domain Bro-N PF02498.12 gi|305662667|ref|YP_003858955.1| - 0.13 12.6 0.5 2.4 8.4 0.4 2.2 1 1 0 1 1 1 0 BRO family, N-terminal domain AF2331-like PF14556.1 gi|305662667|ref|YP_003858955.1| - 0.13 12.5 0.9 1.5 9.2 0.1 2.2 1 1 1 2 2 2 0 AF2331-like DUF2569 PF10754.4 gi|305662668|ref|YP_003858956.1| - 0.029 14.5 4.5 0.036 14.2 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) Ion_trans PF00520.26 gi|305662668|ref|YP_003858956.1| - 0.03 13.5 7.9 0.041 13.1 5.5 1.1 1 0 0 1 1 1 0 Ion transport protein DUF1761 PF08570.5 gi|305662668|ref|YP_003858956.1| - 0.035 14.1 6.8 0.046 13.7 4.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1761) Gpi16 PF04113.9 gi|305662668|ref|YP_003858956.1| - 0.14 10.1 0.5 0.16 9.9 0.4 1.2 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component Baculo_11_kDa PF06143.6 gi|305662668|ref|YP_003858956.1| - 0.15 11.3 4.1 5.4 6.4 0.2 2.4 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF3552 PF12072.3 gi|305662668|ref|YP_003858956.1| - 0.16 11.1 0.1 0.16 11.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF2651 PF10852.3 gi|305662668|ref|YP_003858956.1| - 0.74 10.2 13.0 0.098 13.0 4.9 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2651) ETRAMP PF09716.5 gi|305662668|ref|YP_003858956.1| - 0.99 9.4 9.4 0.46 10.4 0.2 2.7 2 1 0 2 2 2 0 Malarial early transcribed membrane protein (ETRAMP) Tetraspannin PF00335.15 gi|305662668|ref|YP_003858956.1| - 2 7.6 6.6 3.4 6.8 4.6 1.4 1 1 0 1 1 1 0 Tetraspanin family FtsX PF02687.16 gi|305662668|ref|YP_003858956.1| - 3.2 7.5 13.8 6.8 6.4 9.6 1.5 1 1 0 1 1 1 0 FtsX-like permease family Cation_ATPase_C PF00689.16 gi|305662668|ref|YP_003858956.1| - 3.5 7.1 8.9 4.7 6.7 6.2 1.1 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus DUF2500 PF10694.4 gi|305662668|ref|YP_003858956.1| - 6.2 6.8 8.7 0.2 11.6 0.3 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2500) CxxCxxCC PF03692.10 gi|305662669|ref|YP_003858957.1| - 1.3e-05 25.5 3.9 2.4e-05 24.7 2.7 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF1975 PF09318.5 gi|305662669|ref|YP_003858957.1| - 0.012 15.1 0.2 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1975) DUF3638 PF12340.3 gi|305662670|ref|YP_003858958.1| - 0.0081 15.1 0.6 0.011 14.7 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3638) Sec3_C_2 PF15278.1 gi|305662670|ref|YP_003858958.1| - 0.094 12.8 1.3 0.14 12.3 0.3 1.8 2 0 0 2 2 2 0 Sec3 exocyst complex subunit UDG PF03167.14 gi|305662671|ref|YP_003858959.1| - 2.4e-40 137.4 0.0 3.2e-40 137.0 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Methyltransf_18 PF12847.2 gi|305662673|ref|YP_003858961.1| - 6.8e-09 36.2 0.0 9.8e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305662673|ref|YP_003858961.1| - 1e-08 35.2 0.0 1.3e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|305662673|ref|YP_003858961.1| - 1.1e-06 27.8 0.0 1.4e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|305662673|ref|YP_003858961.1| - 1.6e-06 27.8 0.1 2.5e-06 27.1 0.1 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305662673|ref|YP_003858961.1| - 9.5e-05 22.0 0.0 0.00012 21.6 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6_N4_Mtase PF01555.13 gi|305662673|ref|YP_003858961.1| - 0.00014 21.4 0.0 0.00025 20.6 0.0 1.3 1 0 0 1 1 1 1 DNA methylase Methyltransf_25 PF13649.1 gi|305662673|ref|YP_003858961.1| - 0.00051 20.3 0.0 0.00074 19.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305662673|ref|YP_003858961.1| - 0.00086 19.0 0.0 0.0013 18.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305662673|ref|YP_003858961.1| - 0.01 16.3 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|305662673|ref|YP_003858961.1| - 0.014 14.5 0.0 0.02 14.0 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB CMAS PF02353.15 gi|305662673|ref|YP_003858961.1| - 0.018 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|305662673|ref|YP_003858961.1| - 0.018 14.3 0.2 0.027 13.8 0.1 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PrmA PF06325.8 gi|305662673|ref|YP_003858961.1| - 0.024 13.7 0.0 0.027 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.8 gi|305662673|ref|YP_003858961.1| - 0.04 13.2 0.0 0.068 12.4 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 MTS PF05175.9 gi|305662673|ref|YP_003858961.1| - 0.049 13.0 0.0 0.07 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.14 gi|305662673|ref|YP_003858961.1| - 0.051 13.1 0.0 0.073 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FmrO PF07091.6 gi|305662673|ref|YP_003858961.1| - 0.089 11.7 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|305662673|ref|YP_003858961.1| - 0.1 12.1 0.1 0.25 10.9 0.0 1.6 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.12 gi|305662673|ref|YP_003858961.1| - 0.11 11.5 0.1 0.24 10.4 0.0 1.6 1 1 0 1 1 1 0 Putative methyltransferase Cons_hypoth95 PF03602.10 gi|305662673|ref|YP_003858961.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CTP-dep_RFKase PF01982.11 gi|305662674|ref|YP_003858962.1| - 2.4e-30 104.6 0.2 2.7e-30 104.4 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF120 SpoA PF01052.15 gi|305662674|ref|YP_003858962.1| - 0.12 12.0 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 Surface presentation of antigens (SPOA) tRNA-synt_2 PF00152.15 gi|305662675|ref|YP_003858963.1| - 4.8e-84 281.9 0.5 5.9e-84 281.7 0.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|305662675|ref|YP_003858963.1| - 4.6e-14 52.0 0.8 1.1e-13 50.7 0.6 1.7 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|305662675|ref|YP_003858963.1| - 2.6e-05 23.5 0.4 0.0011 18.1 0.1 2.4 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) tRNA-synt_2b PF00587.20 gi|305662675|ref|YP_003858963.1| - 0.0019 17.7 0.1 0.14 11.7 0.1 2.5 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) Band_7 PF01145.20 gi|305662676|ref|YP_003858964.1| - 4.9e-37 127.5 2.8 7.1e-37 127.0 2.0 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|305662676|ref|YP_003858964.1| - 0.01 15.3 0.1 0.016 14.6 0.1 1.4 1 0 0 1 1 1 0 SPFH domain-Band 7 family NfeD PF01957.13 gi|305662677|ref|YP_003858965.1| - 5.6e-27 94.6 3.4 5.6e-27 94.6 2.3 2.3 3 0 0 3 3 3 1 NfeD-like C-terminal, partner-binding CLP_protease PF00574.18 gi|305662677|ref|YP_003858965.1| - 3.1e-07 30.2 0.4 6.5e-07 29.1 0.3 1.5 1 0 0 1 1 1 1 Clp protease AAA_26 PF13500.1 gi|305662677|ref|YP_003858965.1| - 0.071 12.7 0.3 0.21 11.1 0.2 1.8 1 0 0 1 1 1 0 AAA domain Asparaginase_2 PF01112.13 gi|305662678|ref|YP_003858966.1| - 8.6e-67 225.1 0.1 1.1e-66 224.7 0.1 1.0 1 0 0 1 1 1 1 Asparaginase G_glu_transpept PF01019.16 gi|305662678|ref|YP_003858966.1| - 0.081 11.3 0.0 1.2 7.5 0.3 2.0 2 0 0 2 2 2 0 Gamma-glutamyltranspeptidase DUF2258 PF10015.4 gi|305662679|ref|YP_003858967.1| - 8.7e-25 86.3 0.8 1.9e-24 85.2 0.5 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2258) Aminotran_3 PF00202.16 gi|305662680|ref|YP_003858968.1| - 1.9e-96 322.8 0.0 2.2e-96 322.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III DUF3906 PF13046.1 gi|305662681|ref|YP_003858969.1| - 0.017 14.6 0.2 0.017 14.6 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3906) HEPN PF05168.9 gi|305662681|ref|YP_003858969.1| - 0.063 13.1 0.2 0.07 13.0 0.1 1.1 1 0 0 1 1 1 0 HEPN domain zf-FCS PF06467.9 gi|305662682|ref|YP_003858970.1| - 0.027 14.0 0.1 0.038 13.6 0.1 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif YHS PF04945.8 gi|305662682|ref|YP_003858970.1| - 0.046 13.5 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 YHS domain Abi_C PF14355.1 gi|305662683|ref|YP_003858971.1| - 0.015 15.2 0.1 0.029 14.2 0.1 1.6 1 0 0 1 1 1 0 Abortive infection C-terminus AAA_18 PF13238.1 gi|305662684|ref|YP_003858972.1| - 6.4e-18 65.3 0.1 9.5e-18 64.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305662684|ref|YP_003858972.1| - 3.7e-14 53.5 0.0 5e-14 53.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|305662684|ref|YP_003858972.1| - 2.1e-05 24.4 0.1 0.00016 21.5 0.1 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA PF00004.24 gi|305662684|ref|YP_003858972.1| - 2.6e-05 24.4 0.1 0.0001 22.5 0.1 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cytidylate_kin2 PF13189.1 gi|305662684|ref|YP_003858972.1| - 0.0013 18.7 0.1 0.0026 17.6 0.0 1.6 1 1 0 1 1 1 1 Cytidylate kinase-like family CoaE PF01121.15 gi|305662684|ref|YP_003858972.1| - 0.0021 17.4 0.3 0.0081 15.5 0.0 2.0 2 1 1 3 3 3 1 Dephospho-CoA kinase AAA_28 PF13521.1 gi|305662684|ref|YP_003858972.1| - 0.0076 16.2 0.2 0.013 15.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|305662684|ref|YP_003858972.1| - 0.014 14.5 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|305662684|ref|YP_003858972.1| - 0.071 13.2 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|305662684|ref|YP_003858972.1| - 0.13 11.3 1.0 0.7 8.9 0.7 2.0 1 1 0 1 1 1 0 Zeta toxin DUF87 PF01935.12 gi|305662684|ref|YP_003858972.1| - 0.24 11.1 4.2 2.2 8.0 2.9 2.2 1 1 0 1 1 1 0 Domain of unknown function DUF87 Snf7 PF03357.16 gi|305662685|ref|YP_003858973.1| - 8.1e-05 22.0 0.2 0.00013 21.4 0.1 1.3 1 1 0 1 1 1 1 Snf7 Ist1 PF03398.9 gi|305662685|ref|YP_003858973.1| - 0.18 11.2 2.8 0.094 12.1 0.6 1.6 2 0 0 2 2 2 0 Regulator of Vps4 activity in the MVB pathway LOH1CR12 PF10158.4 gi|305662685|ref|YP_003858973.1| - 0.22 11.3 1.9 0.48 10.2 0.2 2.2 2 1 1 3 3 3 0 Tumour suppressor protein Ribosomal_L35Ae PF01247.13 gi|305662686|ref|YP_003858974.1| - 2.6e-09 36.7 0.8 7.7e-09 35.2 0.6 1.6 1 1 0 1 1 1 1 Ribosomal protein L35Ae HlyD_3 PF13437.1 gi|305662686|ref|YP_003858974.1| - 0.0022 18.3 0.0 0.0025 18.1 0.0 1.2 1 0 0 1 1 1 1 HlyD family secretion protein LSM14 PF12701.2 gi|305662686|ref|YP_003858974.1| - 0.035 13.9 1.0 0.088 12.6 0.1 1.9 1 1 1 2 2 2 0 Scd6-like Sm domain DNA_ligase_A_M PF01068.16 gi|305662687|ref|YP_003858975.1| - 3.8e-57 192.9 0.1 5.5e-57 192.3 0.1 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|305662687|ref|YP_003858975.1| - 2.3e-46 157.8 0.1 1.7e-45 154.9 0.1 2.1 1 1 1 2 2 2 1 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|305662687|ref|YP_003858975.1| - 3.6e-28 97.8 0.0 1.3e-27 95.9 0.0 2.0 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region DNA_ligase_OB_2 PF14743.1 gi|305662687|ref|YP_003858975.1| - 3.8e-05 23.2 0.1 0.0049 16.5 0.0 2.7 2 0 0 2 2 2 1 DNA ligase OB-like domain Asparaginase PF00710.15 gi|305662688|ref|YP_003858976.1| - 6.7e-90 301.1 0.1 8.7e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Thioredoxin_4 PF13462.1 gi|305662689|ref|YP_003858977.1| - 2.5e-09 37.3 0.0 4.1e-09 36.6 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|305662689|ref|YP_003858977.1| - 0.00049 20.2 0.0 0.0027 17.9 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain DUF3139 PF11337.3 gi|305662689|ref|YP_003858977.1| - 0.032 14.4 2.5 0.11 12.7 1.7 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) SP_C-Propep PF08999.5 gi|305662689|ref|YP_003858977.1| - 0.057 12.8 0.8 0.12 11.9 0.6 1.5 1 0 0 1 1 1 0 Surfactant protein C, N terminal propeptide ATP_bind_1 PF03029.12 gi|305662690|ref|YP_003858978.1| - 1.7e-46 158.7 0.0 1.9e-46 158.5 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein GTP_EFTU PF00009.22 gi|305662690|ref|YP_003858978.1| - 7.9e-05 22.1 0.6 0.0013 18.1 0.5 2.5 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|305662690|ref|YP_003858978.1| - 0.00013 21.9 1.0 0.00067 19.6 0.6 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase CbiA PF01656.18 gi|305662690|ref|YP_003858978.1| - 0.00028 20.3 0.0 0.00061 19.2 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.2 gi|305662690|ref|YP_003858978.1| - 0.00032 20.2 0.0 0.013 14.9 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain PduV-EutP PF10662.4 gi|305662690|ref|YP_003858978.1| - 0.00076 18.9 3.0 3.4 7.1 1.1 3.8 3 1 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation Gtr1_RagA PF04670.7 gi|305662690|ref|YP_003858978.1| - 0.0014 17.7 4.1 0.026 13.6 0.8 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region AAA_22 PF13401.1 gi|305662690|ref|YP_003858978.1| - 0.0019 18.3 0.0 0.0094 16.1 0.0 2.1 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|305662690|ref|YP_003858978.1| - 0.0032 16.9 0.0 1.8 7.9 0.1 2.2 2 0 0 2 2 2 2 SRP54-type protein, GTPase domain AAA_5 PF07728.9 gi|305662690|ref|YP_003858978.1| - 0.0086 15.8 0.0 0.025 14.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) ArsA_ATPase PF02374.10 gi|305662690|ref|YP_003858978.1| - 0.011 14.8 0.0 0.35 9.8 0.0 2.3 2 0 0 2 2 2 0 Anion-transporting ATPase AAA_16 PF13191.1 gi|305662690|ref|YP_003858978.1| - 0.021 14.8 0.0 0.041 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain SRPRB PF09439.5 gi|305662690|ref|YP_003858978.1| - 0.025 13.8 2.1 0.43 9.7 0.7 2.1 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|305662690|ref|YP_003858978.1| - 0.028 15.2 0.2 0.077 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|305662690|ref|YP_003858978.1| - 0.035 13.6 0.1 0.12 11.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305662690|ref|YP_003858978.1| - 0.037 13.2 0.0 0.9 8.7 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 ArgK PF03308.11 gi|305662690|ref|YP_003858978.1| - 0.056 12.2 0.5 0.84 8.3 0.0 2.6 3 0 0 3 3 3 0 ArgK protein AAA_33 PF13671.1 gi|305662690|ref|YP_003858978.1| - 0.15 11.9 0.0 0.27 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305662690|ref|YP_003858978.1| - 0.34 10.3 2.3 17 4.7 1.1 2.3 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Glycos_transf_4 PF00953.16 gi|305662691|ref|YP_003858979.1| - 3.1e-22 79.0 12.5 3.1e-22 79.0 8.7 2.1 3 1 0 3 3 3 1 Glycosyl transferase family 4 Metallophos_2 PF12850.2 gi|305662692|ref|YP_003858980.1| - 2.5e-26 92.3 0.0 3e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305662692|ref|YP_003858980.1| - 9e-08 31.7 0.1 0.001 18.5 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase PadR PF03551.9 gi|305662693|ref|YP_003858981.1| - 2.2e-18 65.7 0.3 3.5e-18 65.1 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_34 PF13601.1 gi|305662693|ref|YP_003858981.1| - 5.3e-05 23.1 0.0 0.00015 21.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|305662693|ref|YP_003858981.1| - 0.00016 21.3 0.0 0.00034 20.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix Replic_Relax PF13814.1 gi|305662693|ref|YP_003858981.1| - 0.017 15.0 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation TrmB PF01978.14 gi|305662693|ref|YP_003858981.1| - 0.033 13.9 0.2 0.16 11.6 0.1 2.2 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ABC_tran PF00005.22 gi|305662694|ref|YP_003858982.1| - 1.1e-31 109.9 0.0 1.6e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662694|ref|YP_003858982.1| - 1.2e-15 58.2 0.1 2.2e-10 40.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|305662694|ref|YP_003858982.1| - 3.2e-06 26.4 0.2 0.00039 19.6 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|305662694|ref|YP_003858982.1| - 0.00027 20.4 0.1 0.00048 19.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|305662694|ref|YP_003858982.1| - 0.00037 20.9 0.0 0.0007 20.0 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA PF00004.24 gi|305662694|ref|YP_003858982.1| - 0.00037 20.6 0.2 0.01 16.0 0.1 2.9 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|305662694|ref|YP_003858982.1| - 0.0004 20.0 0.2 0.00097 18.8 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain SRP54 PF00448.17 gi|305662694|ref|YP_003858982.1| - 0.00096 18.6 0.2 0.0021 17.5 0.0 1.6 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|305662694|ref|YP_003858982.1| - 0.0023 18.2 0.8 0.0027 18.0 0.2 1.6 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|305662694|ref|YP_003858982.1| - 0.0025 16.6 0.0 0.004 15.9 0.0 1.3 1 0 0 1 1 1 1 ArgK protein AAA_22 PF13401.1 gi|305662694|ref|YP_003858982.1| - 0.0056 16.8 0.1 0.051 13.7 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305662694|ref|YP_003858982.1| - 0.0074 15.5 0.1 2.5 7.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|305662694|ref|YP_003858982.1| - 0.022 14.4 0.2 0.37 10.4 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|305662694|ref|YP_003858982.1| - 0.046 13.3 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|305662694|ref|YP_003858982.1| - 0.048 13.0 0.2 5.8 6.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|305662694|ref|YP_003858982.1| - 0.048 13.0 0.4 1.1 8.5 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain ABC2_membrane PF01061.19 gi|305662695|ref|YP_003858983.1| - 3.7e-38 130.8 19.7 3.7e-38 130.8 13.7 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|305662695|ref|YP_003858983.1| - 5.4e-19 68.4 23.6 5.4e-19 68.4 16.3 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305662695|ref|YP_003858983.1| - 0.0019 17.4 26.4 0.0025 17.0 18.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein Nucleos_tra2_C PF07662.8 gi|305662695|ref|YP_003858983.1| - 0.01 15.3 4.0 0.018 14.5 2.0 1.8 1 1 0 1 1 1 0 Na+ dependent nucleoside transporter C-terminus MarC PF01914.12 gi|305662696|ref|YP_003858984.1| - 7.8e-33 113.3 26.4 9.5e-33 113.0 18.3 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein Erg28 PF03694.8 gi|305662696|ref|YP_003858984.1| - 0.08 12.9 2.9 0.14 12.1 2.0 1.6 1 1 0 1 1 1 0 Erg28 like protein EamA PF00892.15 gi|305662697|ref|YP_003858985.1| - 1.5e-22 79.9 29.6 5.2e-13 49.1 9.7 2.3 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|305662697|ref|YP_003858985.1| - 4.5e-06 26.8 20.7 0.00016 21.8 2.2 3.1 2 2 1 3 3 3 2 Multidrug resistance efflux transporter NTPase_I-T PF01931.13 gi|305662698|ref|YP_003858986.1| - 4.5e-42 143.6 0.0 5.1e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Peptidase_S8 PF00082.17 gi|305662699|ref|YP_003858987.1| - 6.8e-44 150.1 0.4 1.1e-43 149.3 0.0 1.5 2 0 0 2 2 2 1 Subtilase family DUF869 PF05911.6 gi|305662699|ref|YP_003858987.1| - 0.26 9.4 0.3 0.35 9.0 0.2 1.0 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) AIP3 PF03915.8 gi|305662699|ref|YP_003858987.1| - 0.79 8.5 2.1 1.1 8.0 1.5 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 PfkB PF00294.19 gi|305662700|ref|YP_003858988.1| - 1.2e-72 244.6 0.2 1.4e-72 244.3 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|305662700|ref|YP_003858988.1| - 4.1e-15 55.6 0.0 6.1e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.12 gi|305662700|ref|YP_003858988.1| - 0.0089 15.3 0.1 0.018 14.3 0.0 1.4 2 0 0 2 2 2 1 Carbohydrate kinase HAD_2 PF13419.1 gi|305662701|ref|YP_003858989.1| - 2.1e-10 41.0 0.2 3.9e-09 36.9 0.1 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|305662701|ref|YP_003858989.1| - 5.6e-06 26.9 0.5 0.028 14.8 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.13 gi|305662701|ref|YP_003858989.1| - 9.1e-06 25.4 1.6 0.0012 18.5 1.1 3.0 1 1 0 1 1 1 1 NLI interacting factor-like phosphatase HAD PF12710.2 gi|305662701|ref|YP_003858989.1| - 0.001 19.2 0.3 0.0019 18.4 0.2 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|305662701|ref|YP_003858989.1| - 0.001 18.7 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.2 gi|305662701|ref|YP_003858989.1| - 0.0015 18.1 0.2 0.0078 15.8 0.2 2.2 1 1 0 1 1 1 1 Acid Phosphatase Hydrolase_3 PF08282.7 gi|305662701|ref|YP_003858989.1| - 0.33 10.5 2.2 19 4.7 0.1 2.9 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase SAICAR_synt PF01259.13 gi|305662702|ref|YP_003858990.1| - 2.3e-49 167.7 0.2 2.7e-49 167.5 0.1 1.0 1 0 0 1 1 1 1 SAICAR synthetase PurS PF02700.9 gi|305662703|ref|YP_003858991.1| - 2.3e-23 81.9 0.0 2.5e-23 81.8 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase GATase_5 PF13507.1 gi|305662704|ref|YP_003858992.1| - 3.5e-43 147.3 0.0 6.2e-43 146.5 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|305662704|ref|YP_003858992.1| - 2.9e-08 33.3 0.0 4.2e-08 32.8 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|305662704|ref|YP_003858992.1| - 1.4e-07 31.2 0.0 2.2e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|305662704|ref|YP_003858992.1| - 3.4e-06 26.4 0.0 5e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|305662704|ref|YP_003858992.1| - 1.3e-05 24.6 0.0 1.9e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|305662704|ref|YP_003858992.1| - 0.00063 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|305662704|ref|YP_003858992.1| - 0.0031 17.1 0.0 0.0077 15.8 0.0 1.6 2 0 0 2 2 2 1 SNO glutamine amidotransferase family AIRS_C PF02769.17 gi|305662705|ref|YP_003858993.1| - 1.4e-44 151.7 0.0 7.6e-26 90.9 0.0 2.3 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|305662705|ref|YP_003858993.1| - 1.8e-38 130.6 0.0 8.6e-23 80.4 0.0 2.5 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain Propep_M14 PF02244.11 gi|305662705|ref|YP_003858993.1| - 0.099 12.3 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Carboxypeptidase activation peptide Sigma70_r3 PF04539.11 gi|305662705|ref|YP_003858993.1| - 0.15 11.9 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70 region 3 GATase_6 PF13522.1 gi|305662706|ref|YP_003858994.1| - 8.9e-15 54.8 0.0 1.4e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|305662706|ref|YP_003858994.1| - 2.9e-14 52.8 0.0 4.6e-14 52.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|305662706|ref|YP_003858994.1| - 4.4e-13 48.6 0.1 2.7e-08 32.9 0.0 3.0 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|305662706|ref|YP_003858994.1| - 2.4e-12 46.6 0.4 5.2e-12 45.5 0.2 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|305662706|ref|YP_003858994.1| - 0.15 11.3 0.0 0.25 10.6 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase Pribosyltran PF00156.22 gi|305662707|ref|YP_003858995.1| - 3.8e-13 49.2 0.1 9.8e-13 47.9 0.1 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|305662707|ref|YP_003858995.1| - 0.14 11.4 0.0 0.39 10.0 0.0 1.7 1 1 0 1 1 1 0 Phosphoribosyl transferase GARS_A PF01071.14 gi|305662708|ref|YP_003858996.1| - 6.1e-39 133.5 0.0 1.1e-38 132.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|305662708|ref|YP_003858996.1| - 6.9e-24 84.2 0.0 1.1e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|305662708|ref|YP_003858996.1| - 1.1e-13 51.1 0.0 3.2e-13 49.6 0.0 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|305662708|ref|YP_003858996.1| - 8.4e-08 32.1 0.0 2.1e-07 30.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305662708|ref|YP_003858996.1| - 7.6e-06 25.8 0.0 2.6e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|305662708|ref|YP_003858996.1| - 2.2e-05 23.3 0.0 3.1e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon GSH-S_ATP PF02955.11 gi|305662708|ref|YP_003858996.1| - 0.00085 18.5 0.1 0.0016 17.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.1 gi|305662708|ref|YP_003858996.1| - 0.0042 16.2 0.0 0.0069 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.8 gi|305662708|ref|YP_003858996.1| - 0.016 14.6 0.2 0.077 12.3 0.2 1.9 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|305662708|ref|YP_003858996.1| - 0.028 13.7 0.0 0.046 12.9 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_TupA PF14305.1 gi|305662708|ref|YP_003858996.1| - 0.034 13.4 0.0 0.06 12.6 0.0 1.3 1 0 0 1 1 1 0 TupA-like ATPgrasp ATP-grasp PF02222.17 gi|305662709|ref|YP_003858997.1| - 3.2e-39 134.0 0.0 5.6e-39 133.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|305662709|ref|YP_003858997.1| - 3.3e-21 75.8 0.1 6.4e-21 74.9 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|305662709|ref|YP_003858997.1| - 9.6e-10 38.1 0.0 2e-09 37.1 0.0 1.5 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATPgrasp_Ter PF15632.1 gi|305662709|ref|YP_003858997.1| - 6.2e-08 31.7 0.0 6.7e-07 28.3 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|305662709|ref|YP_003858997.1| - 2.6e-05 23.5 0.0 5.2e-05 22.6 0.0 1.5 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain RmlD_sub_bind PF04321.12 gi|305662709|ref|YP_003858997.1| - 0.00045 19.2 0.0 0.00073 18.5 0.0 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain 2-Hacid_dh_C PF02826.14 gi|305662709|ref|YP_003858997.1| - 0.0049 16.0 0.0 0.01 14.9 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|305662709|ref|YP_003858997.1| - 0.0068 16.5 0.1 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain GARS_A PF01071.14 gi|305662709|ref|YP_003858997.1| - 0.018 14.6 0.0 0.04 13.4 0.0 1.6 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|305662709|ref|YP_003858997.1| - 0.05 12.8 0.0 0.095 11.8 0.0 1.5 1 0 0 1 1 1 0 ATP-grasp domain NAD_binding_10 PF13460.1 gi|305662709|ref|YP_003858997.1| - 0.094 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding AIRC PF00731.15 gi|305662710|ref|YP_003858998.1| - 1.7e-48 163.7 0.3 1.9e-48 163.5 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase GST_N_2 PF13409.1 gi|305662710|ref|YP_003858998.1| - 0.0031 17.4 0.0 0.0038 17.2 0.0 1.3 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|305662710|ref|YP_003858998.1| - 0.11 12.4 0.0 0.28 11.2 0.0 1.6 2 0 0 2 2 2 0 Glutaredoxin AIRS_C PF02769.17 gi|305662711|ref|YP_003858999.1| - 6.2e-19 68.5 0.1 3.7e-18 66.0 0.0 2.1 3 0 0 3 3 3 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|305662711|ref|YP_003858999.1| - 8.2e-14 51.6 0.1 1.9e-13 50.4 0.1 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF1297 PF06973.7 gi|305662712|ref|YP_003859000.1| - 2.6e-73 245.3 0.4 3.4e-73 244.9 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|305662712|ref|YP_003859000.1| - 8.5e-46 154.7 0.0 1.5e-45 153.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ATP-grasp_4 PF13535.1 gi|305662712|ref|YP_003859000.1| - 4.7e-06 26.4 0.0 0.00029 20.6 0.0 2.2 1 1 0 1 1 1 1 ATP-grasp domain Lyase_1 PF00206.15 gi|305662713|ref|YP_003859001.1| - 2.2e-43 148.6 0.0 3e-43 148.2 0.0 1.1 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.4 gi|305662713|ref|YP_003859001.1| - 1.3e-16 60.3 0.0 3.5e-16 58.9 0.0 1.8 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.6 gi|305662713|ref|YP_003859001.1| - 0.0016 18.2 0.5 0.0034 17.1 0.1 1.8 2 0 0 2 2 2 1 Adenylosuccinate lyase C-terminal DUF1297 PF06973.7 gi|305662714|ref|YP_003859002.1| - 8e-74 247.0 0.1 1.2e-73 246.4 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.7 gi|305662714|ref|YP_003859002.1| - 3.4e-43 146.3 0.0 5.6e-43 145.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) CPSase_L_D2 PF02786.12 gi|305662714|ref|YP_003859002.1| - 0.092 12.0 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|305662714|ref|YP_003859002.1| - 0.16 11.6 0.0 0.5 10.0 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain Fae PF08714.6 gi|305662715|ref|YP_003859003.1| - 1.3e-74 249.2 0.2 1.4e-74 249.0 0.1 1.0 1 0 0 1 1 1 1 Formaldehyde-activating enzyme (Fae) DUF447 PF04289.7 gi|305662716|ref|YP_003859004.1| - 2.8e-20 72.6 0.1 3.3e-20 72.3 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF1464 PF07318.7 gi|305662717|ref|YP_003859005.1| - 3.6e-89 298.9 4.9 4.2e-89 298.7 3.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) Acetate_kinase PF00871.12 gi|305662717|ref|YP_003859005.1| - 1.1e-06 27.4 0.4 8.1e-06 24.6 0.2 1.9 1 1 0 1 1 1 1 Acetokinase family DUF381 PF04038.7 gi|305662718|ref|YP_003859006.1| - 1.8e-13 50.2 0.1 2.8e-13 49.6 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|305662718|ref|YP_003859006.1| - 2.2e-11 43.0 0.1 3.9e-11 42.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) Flavoprotein PF02441.14 gi|305662719|ref|YP_003859007.1| - 1.5e-14 53.7 0.0 3e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 Flavoprotein Fer4_10 PF13237.1 gi|305662719|ref|YP_003859007.1| - 4e-08 32.9 24.4 5.1e-05 22.9 9.0 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|305662719|ref|YP_003859007.1| - 1.7e-07 30.5 2.2 1.7e-07 30.5 1.5 3.2 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|305662719|ref|YP_003859007.1| - 2.9e-07 30.0 16.8 1.5e-06 27.8 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|305662719|ref|YP_003859007.1| - 1.1e-06 28.2 2.0 1.1e-06 28.2 1.4 2.5 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305662719|ref|YP_003859007.1| - 3.9e-06 27.1 9.0 6.3e-06 26.4 5.9 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305662719|ref|YP_003859007.1| - 4e-05 23.3 0.8 4e-05 23.3 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305662719|ref|YP_003859007.1| - 5.1e-05 23.2 4.3 0.00016 21.6 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305662719|ref|YP_003859007.1| - 0.00015 21.9 10.3 0.0017 18.5 2.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|305662719|ref|YP_003859007.1| - 0.00083 20.0 7.8 0.0085 16.8 0.6 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|305662719|ref|YP_003859007.1| - 0.0036 17.5 2.7 0.0036 17.5 1.9 2.8 2 1 0 2 2 1 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|305662719|ref|YP_003859007.1| - 0.044 14.3 3.7 0.044 14.3 2.6 3.0 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_11 PF13247.1 gi|305662719|ref|YP_003859007.1| - 0.21 11.4 8.7 0.36 10.7 6.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|305662719|ref|YP_003859007.1| - 2.4 8.8 15.1 0.35 11.4 1.5 3.1 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|305662719|ref|YP_003859007.1| - 4.5 7.7 13.1 0.29 11.5 0.9 2.9 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|305662719|ref|YP_003859007.1| - 5.2 7.5 11.3 23 5.5 7.7 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Pterin_bind PF00809.17 gi|305662720|ref|YP_003859008.1| - 4.5e-18 65.3 0.2 8e-18 64.5 0.1 1.4 1 0 0 1 1 1 1 Pterin binding enzyme DUF4346 PF14251.1 gi|305662720|ref|YP_003859008.1| - 1.1e-10 41.2 0.2 7e-09 35.4 0.1 2.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4346) DUF512 PF04459.7 gi|305662720|ref|YP_003859008.1| - 0.055 12.5 0.1 0.21 10.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF512) GHMP_kinases_C PF08544.8 gi|305662721|ref|YP_003859009.1| - 9e-05 22.5 0.0 0.00015 21.9 0.0 1.3 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|305662721|ref|YP_003859009.1| - 0.00015 21.7 0.0 0.00029 20.8 0.0 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain MAF_flag10 PF01973.13 gi|305662722|ref|YP_003859010.1| - 2e-27 95.7 0.1 2.6e-27 95.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF115 GCHY-1 PF02649.9 gi|305662723|ref|YP_003859011.1| - 2.4e-46 158.1 0.2 2.8e-46 158.0 0.2 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 Meth_synt_2 PF01717.13 gi|305662724|ref|YP_003859012.1| - 8.2e-11 41.4 0.0 1.5e-10 40.5 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|305662724|ref|YP_003859012.1| - 5.7e-05 22.5 0.0 9.9e-05 21.7 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain Metallophos PF00149.23 gi|305662725|ref|YP_003859013.1| - 5.2e-23 81.5 0.1 7.9e-23 80.9 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|305662725|ref|YP_003859013.1| - 2e-05 24.4 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Pyr_redox_2 PF07992.9 gi|305662726|ref|YP_003859014.1| - 2.6e-35 122.1 6.2 4.6e-18 65.8 0.1 3.7 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|305662726|ref|YP_003859014.1| - 1.9e-21 76.2 7.5 9.4e-18 64.3 0.3 3.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|305662726|ref|YP_003859014.1| - 8.4e-17 61.1 0.8 2.8e-16 59.5 0.0 2.2 2 1 1 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|305662726|ref|YP_003859014.1| - 1.6e-12 47.9 0.5 6.7e-07 29.5 0.0 3.2 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|305662726|ref|YP_003859014.1| - 1.7e-12 46.9 5.1 0.00029 19.8 0.2 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase FAD_oxidored PF12831.2 gi|305662726|ref|YP_003859014.1| - 2.1e-06 27.1 4.2 0.00083 18.5 1.0 3.1 2 1 1 3 3 3 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|305662726|ref|YP_003859014.1| - 3.8e-06 25.6 6.6 0.0076 14.7 0.8 4.0 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|305662726|ref|YP_003859014.1| - 8.4e-06 25.7 1.2 0.0085 16.1 0.1 2.9 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|305662726|ref|YP_003859014.1| - 8.7e-05 21.5 3.6 0.0052 15.6 0.6 2.8 3 1 0 4 4 4 1 FAD binding domain GIDA PF01134.17 gi|305662726|ref|YP_003859014.1| - 0.00026 19.9 11.5 0.00042 19.3 0.6 3.7 4 0 0 4 4 4 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|305662726|ref|YP_003859014.1| - 0.00036 19.3 0.3 0.00067 18.4 0.2 1.4 1 0 0 1 1 1 1 Tryptophan halogenase K_oxygenase PF13434.1 gi|305662726|ref|YP_003859014.1| - 0.00045 19.2 0.0 0.0014 17.6 0.0 1.7 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|305662726|ref|YP_003859014.1| - 0.0031 16.5 0.5 0.0031 16.5 0.3 1.6 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|305662726|ref|YP_003859014.1| - 0.0033 17.6 0.6 3.1 8.1 0.1 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding TrkA_N PF02254.13 gi|305662726|ref|YP_003859014.1| - 0.0061 16.5 0.1 2 8.4 0.0 2.8 2 1 0 2 2 2 1 TrkA-N domain adh_short PF00106.20 gi|305662726|ref|YP_003859014.1| - 0.0079 16.1 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 short chain dehydrogenase GFO_IDH_MocA PF01408.17 gi|305662726|ref|YP_003859014.1| - 0.033 14.6 0.2 1.7 9.1 0.0 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_9 PF13454.1 gi|305662726|ref|YP_003859014.1| - 0.13 12.0 2.8 38 4.0 0.1 3.4 4 0 0 4 4 4 0 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|305662726|ref|YP_003859014.1| - 0.18 10.8 1.0 1 8.3 0.0 2.1 2 0 0 2 2 2 0 FAD binding domain DUF3043 PF11241.3 gi|305662727|ref|YP_003859015.1| - 0.013 15.0 2.9 0.016 14.8 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) DUF2339 PF10101.4 gi|305662727|ref|YP_003859015.1| - 0.025 12.8 3.2 0.027 12.7 2.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) ABC2_membrane_4 PF12730.2 gi|305662727|ref|YP_003859015.1| - 0.056 12.6 6.0 0.059 12.5 4.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein Herpes_LMP2 PF07415.6 gi|305662727|ref|YP_003859015.1| - 0.17 10.4 1.5 0.18 10.3 1.0 1.0 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein DUF2929 PF11151.3 gi|305662727|ref|YP_003859015.1| - 0.17 11.9 7.1 0.24 11.4 4.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2929) DUF3671 PF12420.3 gi|305662727|ref|YP_003859015.1| - 0.19 11.6 6.0 0.22 11.5 4.2 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF4199 PF13858.1 gi|305662727|ref|YP_003859015.1| - 0.35 10.7 6.1 0.49 10.3 4.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4199) MARVEL PF01284.18 gi|305662727|ref|YP_003859015.1| - 0.37 10.6 4.8 0.43 10.3 3.3 1.1 1 0 0 1 1 1 0 Membrane-associating domain DUF805 PF05656.9 gi|305662727|ref|YP_003859015.1| - 0.92 9.3 7.9 1.1 9.0 5.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) zf-DHHC PF01529.15 gi|305662727|ref|YP_003859015.1| - 2.7 7.3 9.4 12 5.2 6.7 1.7 1 1 0 1 1 1 0 DHHC palmitoyltransferase CcmD PF04995.9 gi|305662727|ref|YP_003859015.1| - 4.8 6.9 5.8 0.34 10.6 0.3 1.8 2 1 0 2 2 2 0 Heme exporter protein D (CcmD) BatA PF07584.6 gi|305662727|ref|YP_003859015.1| - 9.7 6.4 9.3 2.7 8.2 0.5 2.1 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal HypA PF01155.14 gi|305662728|ref|YP_003859016.1| - 0.0017 17.9 0.2 0.0027 17.3 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family IBR PF01485.16 gi|305662728|ref|YP_003859016.1| - 0.0061 16.3 0.4 0.0079 16.0 0.3 1.2 1 0 0 1 1 1 1 IBR domain PCI_Csn8 PF10075.4 gi|305662728|ref|YP_003859016.1| - 0.078 12.7 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 COP9 signalosome, subunit CSN8 RNA_POL_M_15KD PF02150.11 gi|305662728|ref|YP_003859016.1| - 0.093 12.4 0.8 0.44 10.2 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.5 gi|305662728|ref|YP_003859016.1| - 0.097 12.6 4.7 0.3 11.0 2.8 2.1 2 1 0 2 2 2 0 Zinc ribbon domain DUF1451 PF07295.6 gi|305662728|ref|YP_003859016.1| - 0.12 12.1 0.9 0.26 11.0 0.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DZR PF12773.2 gi|305662728|ref|YP_003859016.1| - 0.15 11.8 1.8 0.32 10.8 1.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|305662728|ref|YP_003859016.1| - 0.48 10.1 4.5 2.3 8.0 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-FPG_IleRS PF06827.9 gi|305662728|ref|YP_003859016.1| - 0.74 9.5 7.0 1.7 8.3 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS PhnA_Zn_Ribbon PF08274.7 gi|305662728|ref|YP_003859016.1| - 1.1 9.0 6.4 0.81 9.5 1.2 2.1 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|305662728|ref|YP_003859016.1| - 1.2 9.0 4.4 15 5.5 3.0 2.1 1 1 0 1 1 1 0 Rubredoxin NRDD PF13597.1 gi|305662729|ref|YP_003859017.1| - 4e-127 424.5 0.0 4.6e-127 424.3 0.0 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.2 gi|305662729|ref|YP_003859017.1| - 0.00019 21.2 0.1 0.00035 20.3 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662729|ref|YP_003859017.1| - 0.0016 17.5 1.5 0.0016 17.5 1.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DUF1310 PF07006.6 gi|305662729|ref|YP_003859017.1| - 0.0018 17.8 0.0 0.004 16.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1310) UPF0547 PF10571.4 gi|305662729|ref|YP_003859017.1| - 0.0073 15.9 3.4 0.017 14.8 2.3 1.6 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|305662729|ref|YP_003859017.1| - 0.012 15.0 0.5 0.012 15.0 0.3 1.9 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|305662729|ref|YP_003859017.1| - 0.023 14.3 0.4 0.044 13.4 0.2 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF35_N PF12172.3 gi|305662729|ref|YP_003859017.1| - 0.025 14.4 1.9 0.052 13.4 1.3 1.6 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C3HC4_3 PF13920.1 gi|305662729|ref|YP_003859017.1| - 0.029 14.0 0.6 0.049 13.3 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-NADH-PPase PF09297.6 gi|305662729|ref|YP_003859017.1| - 2.7 7.6 5.2 14 5.2 0.3 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Hjc PF01870.13 gi|305662730|ref|YP_003859018.1| - 0.0014 18.2 0.1 0.0026 17.3 0.0 1.5 1 1 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF2148 PF09918.4 gi|305662731|ref|YP_003859019.1| - 1e-25 89.2 1.5 1e-25 89.2 1.1 1.9 2 1 0 2 2 2 1 Uncharacterized protein containing a ferredoxin domain (DUF2148) ABC_tran PF00005.22 gi|305662732|ref|YP_003859020.1| - 1.1e-21 77.5 0.0 1.5e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662732|ref|YP_003859020.1| - 3.7e-10 40.2 2.3 8e-05 22.7 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|305662732|ref|YP_003859020.1| - 2.7e-05 23.6 0.0 4.8e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|305662732|ref|YP_003859020.1| - 3.7e-05 23.0 0.0 0.042 13.0 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305662732|ref|YP_003859020.1| - 0.00018 21.9 0.1 0.00027 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|305662732|ref|YP_003859020.1| - 0.00086 17.9 0.2 0.39 9.1 0.1 2.0 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|305662732|ref|YP_003859020.1| - 0.0011 18.8 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305662732|ref|YP_003859020.1| - 0.0021 17.1 1.0 0.0066 15.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|305662732|ref|YP_003859020.1| - 0.0035 17.3 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|305662732|ref|YP_003859020.1| - 0.0038 16.9 0.1 0.0073 16.0 0.0 1.5 2 0 0 2 2 2 1 Archaeal ATPase MutS_V PF00488.16 gi|305662732|ref|YP_003859020.1| - 0.0053 16.1 0.0 0.019 14.3 0.0 1.7 2 0 0 2 2 2 1 MutS domain V DUF258 PF03193.11 gi|305662732|ref|YP_003859020.1| - 0.014 14.5 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|305662732|ref|YP_003859020.1| - 0.019 14.5 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|305662732|ref|YP_003859020.1| - 0.023 14.4 0.1 0.71 9.6 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|305662732|ref|YP_003859020.1| - 0.024 14.3 0.0 0.057 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_10 PF12846.2 gi|305662732|ref|YP_003859020.1| - 0.039 13.4 0.2 0.043 13.2 0.1 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|305662732|ref|YP_003859020.1| - 0.056 13.5 0.0 0.12 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|305662732|ref|YP_003859020.1| - 0.065 13.0 0.1 0.71 9.6 0.0 2.3 2 1 0 2 2 2 0 Dynamin family MMR_HSR1 PF01926.18 gi|305662732|ref|YP_003859020.1| - 0.071 13.0 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Miro PF08477.8 gi|305662732|ref|YP_003859020.1| - 0.077 13.5 0.0 0.19 12.2 0.0 1.7 2 0 0 2 2 1 0 Miro-like protein Zeta_toxin PF06414.7 gi|305662732|ref|YP_003859020.1| - 0.078 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.1 gi|305662732|ref|YP_003859020.1| - 0.09 12.6 0.0 0.24 11.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|305662732|ref|YP_003859020.1| - 0.11 12.0 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_17 PF13207.1 gi|305662732|ref|YP_003859020.1| - 0.12 13.2 0.1 0.33 11.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|305662732|ref|YP_003859020.1| - 0.13 11.7 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|305662732|ref|YP_003859020.1| - 0.14 11.5 0.0 0.36 10.1 0.0 1.6 2 0 0 2 2 1 0 AAA domain HTH_5 PF01022.15 gi|305662732|ref|YP_003859020.1| - 0.17 11.5 0.6 0.38 10.4 0.1 1.9 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family UPF0051 PF01458.12 gi|305662733|ref|YP_003859021.1| - 7.9e-50 169.4 0.0 1.1e-49 169.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0181 PF03701.9 gi|305662733|ref|YP_003859021.1| - 0.049 12.9 0.0 0.094 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0181) Carb_kinase PF01256.12 gi|305662734|ref|YP_003859022.1| - 1.6e-44 152.0 0.0 5.3e-43 147.0 0.0 2.3 3 0 0 3 3 3 1 Carbohydrate kinase YjeF_N PF03853.10 gi|305662734|ref|YP_003859022.1| - 4.1e-38 130.6 0.0 7.4e-38 129.7 0.0 1.4 1 0 0 1 1 1 1 YjeF-related protein N-terminus PA28_alpha PF02251.13 gi|305662734|ref|YP_003859022.1| - 0.053 13.7 0.1 0.11 12.6 0.1 1.5 1 0 0 1 1 1 0 Proteasome activator pa28 alpha subunit Phos_pyr_kin PF08543.7 gi|305662734|ref|YP_003859022.1| - 0.09 11.9 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase FF PF01846.14 gi|305662734|ref|YP_003859022.1| - 0.2 11.6 0.0 0.45 10.5 0.0 1.5 1 0 0 1 1 1 0 FF domain Thi4 PF01946.12 gi|305662735|ref|YP_003859023.1| - 7.7e-85 283.6 1.0 8.9e-85 283.4 0.7 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.19 gi|305662735|ref|YP_003859023.1| - 1.1e-12 47.5 1.3 2.5e-08 33.2 0.8 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|305662735|ref|YP_003859023.1| - 1.3e-09 37.4 2.8 2e-05 23.6 0.8 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|305662735|ref|YP_003859023.1| - 1.3e-08 34.7 2.4 1.3e-08 34.7 1.7 2.1 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|305662735|ref|YP_003859023.1| - 3.1e-08 33.0 0.1 5.1e-08 32.3 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|305662735|ref|YP_003859023.1| - 1.9e-07 30.5 0.8 3.6e-07 29.6 0.6 1.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|305662735|ref|YP_003859023.1| - 7.3e-07 29.2 0.7 1e-06 28.7 0.5 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|305662735|ref|YP_003859023.1| - 1.1e-05 24.7 0.1 7.8e-05 21.9 0.2 2.0 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|305662735|ref|YP_003859023.1| - 1.1e-05 24.1 1.0 2.2e-05 23.1 0.7 1.4 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|305662735|ref|YP_003859023.1| - 7.6e-05 22.8 0.8 0.00043 20.3 0.5 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|305662735|ref|YP_003859023.1| - 0.0038 16.2 0.5 0.016 14.1 0.1 2.0 2 1 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|305662735|ref|YP_003859023.1| - 0.0053 17.1 0.6 0.014 15.7 0.4 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|305662735|ref|YP_003859023.1| - 0.0085 15.0 0.5 0.015 14.2 0.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Trp_halogenase PF04820.9 gi|305662735|ref|YP_003859023.1| - 0.0092 14.6 1.8 0.02 13.5 0.5 1.8 2 0 0 2 2 2 1 Tryptophan halogenase ThiF PF00899.16 gi|305662735|ref|YP_003859023.1| - 0.027 14.2 0.1 0.052 13.3 0.1 1.4 1 0 0 1 1 1 0 ThiF family Shikimate_DH PF01488.15 gi|305662735|ref|YP_003859023.1| - 0.045 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|305662735|ref|YP_003859023.1| - 0.064 13.0 0.9 0.13 12.0 0.7 1.5 1 0 0 1 1 1 0 FAD-NAD(P)-binding DUF438 PF04282.8 gi|305662736|ref|YP_003859024.1| - 1.4e-22 79.2 1.6 1.4e-22 79.2 1.1 2.6 3 0 0 3 3 3 1 Family of unknown function (DUF438) PAS_10 PF13596.1 gi|305662736|ref|YP_003859024.1| - 1.5e-20 73.4 0.0 5.8e-20 71.5 0.0 2.0 2 0 0 2 2 2 1 PAS domain Hemerythrin PF01814.18 gi|305662736|ref|YP_003859024.1| - 4.2e-07 30.2 0.0 1.1e-06 28.8 0.0 1.8 1 0 0 1 1 1 1 Hemerythrin HHE cation binding domain PAS_4 PF08448.5 gi|305662736|ref|YP_003859024.1| - 0.00011 22.1 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|305662736|ref|YP_003859024.1| - 0.00032 21.0 0.0 0.00073 19.8 0.0 1.7 1 0 0 1 1 1 1 PAS domain DUF2802 PF10975.3 gi|305662736|ref|YP_003859024.1| - 0.016 14.9 0.3 0.86 9.4 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF2802) HTH_24 PF13412.1 gi|305662737|ref|YP_003859025.1| - 1.1e-05 24.7 0.6 2.5e-05 23.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|305662737|ref|YP_003859025.1| - 5.4e-05 22.5 0.1 0.00011 21.5 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|305662737|ref|YP_003859025.1| - 0.00013 21.7 0.1 0.00029 20.6 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|305662737|ref|YP_003859025.1| - 0.00024 20.6 2.2 0.00025 20.6 0.1 2.1 2 1 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|305662737|ref|YP_003859025.1| - 0.00026 20.4 5.7 0.00043 19.7 0.2 3.0 3 1 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|305662737|ref|YP_003859025.1| - 0.00053 19.2 0.1 0.0012 18.0 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 KorB PF08535.5 gi|305662737|ref|YP_003859025.1| - 0.0026 17.8 0.0 0.0039 17.3 0.0 1.3 1 0 0 1 1 1 1 KorB domain HTH_17 PF12728.2 gi|305662737|ref|YP_003859025.1| - 0.0051 17.0 0.3 0.012 15.8 0.2 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|305662737|ref|YP_003859025.1| - 0.0055 16.3 0.0 0.037 13.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_26 PF13443.1 gi|305662737|ref|YP_003859025.1| - 0.0087 16.2 0.1 0.21 11.8 0.0 2.2 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain Sigma70_ECF PF07638.6 gi|305662737|ref|YP_003859025.1| - 0.009 15.6 0.1 0.027 14.1 0.0 1.7 2 0 0 2 2 2 1 ECF sigma factor GerE PF00196.14 gi|305662737|ref|YP_003859025.1| - 0.012 14.8 0.0 0.029 13.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_19 PF12844.2 gi|305662737|ref|YP_003859025.1| - 0.013 15.5 0.1 0.03 14.3 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|305662737|ref|YP_003859025.1| - 0.022 14.4 0.1 0.058 13.0 0.1 1.8 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|305662737|ref|YP_003859025.1| - 0.023 14.4 0.0 0.074 12.8 0.0 1.8 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|305662737|ref|YP_003859025.1| - 0.028 14.0 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.1 gi|305662737|ref|YP_003859025.1| - 0.032 14.0 0.0 0.059 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|305662737|ref|YP_003859025.1| - 0.034 13.6 0.3 0.12 11.9 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF1386 PF07138.6 gi|305662737|ref|YP_003859025.1| - 0.044 12.9 0.2 0.063 12.3 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1386) RepB PF07506.6 gi|305662737|ref|YP_003859025.1| - 0.057 13.2 0.0 0.097 12.5 0.0 1.4 1 1 0 1 1 1 0 RepB plasmid partitioning protein HTH_28 PF13518.1 gi|305662737|ref|YP_003859025.1| - 0.075 13.0 0.5 0.2 11.7 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Tnp_4 PF13613.1 gi|305662737|ref|YP_003859025.1| - 0.077 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease ADPrib_exo_Tox PF03496.9 gi|305662737|ref|YP_003859025.1| - 0.079 12.1 0.1 0.087 12.0 0.1 1.1 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme HTH_29 PF13551.1 gi|305662737|ref|YP_003859025.1| - 0.094 12.8 0.1 0.15 12.2 0.1 1.4 1 1 0 1 1 1 0 Winged helix-turn helix Trp_repressor PF01371.14 gi|305662737|ref|YP_003859025.1| - 0.13 12.1 0.3 0.31 10.9 0.0 1.7 2 0 0 2 2 1 0 Trp repressor protein HTH_31 PF13560.1 gi|305662737|ref|YP_003859025.1| - 0.18 12.0 0.4 0.29 11.3 0.0 1.5 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|305662737|ref|YP_003859025.1| - 4.1 7.3 5.4 2.4 8.0 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase DUF2209 PF09974.4 gi|305662738|ref|YP_003859026.1| - 0.013 15.5 0.1 0.016 15.2 0.1 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2209) tRNA-synt_1b PF00579.20 gi|305662739|ref|YP_003859027.1| - 7.2e-28 97.5 0.0 1.6e-27 96.3 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) HTH_17 PF12728.2 gi|305662739|ref|YP_003859027.1| - 0.11 12.7 0.5 0.82 9.9 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF399 PF04187.8 gi|305662739|ref|YP_003859027.1| - 0.13 11.7 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF399 LysE PF01810.13 gi|305662740|ref|YP_003859028.1| - 4.4e-24 84.8 17.5 5.1e-24 84.6 12.1 1.0 1 0 0 1 1 1 1 LysE type translocator DUF2684 PF10885.3 gi|305662740|ref|YP_003859028.1| - 0.011 15.6 0.5 0.03 14.1 0.3 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2684) FA_desaturase PF00487.19 gi|305662740|ref|YP_003859028.1| - 0.72 9.2 9.9 0.61 9.4 5.9 1.8 1 1 0 1 1 1 0 Fatty acid desaturase DUF1418 PF07214.7 gi|305662740|ref|YP_003859028.1| - 6.5 6.4 8.0 56 3.4 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1418) Pox_I6 PF04595.8 gi|305662741|ref|YP_003859029.1| - 0.092 11.4 0.2 1.2 7.8 0.0 2.0 1 1 1 2 2 2 0 Poxvirus I6-like family Nitroreductase PF00881.19 gi|305662742|ref|YP_003859030.1| - 3.7e-35 121.1 0.0 7.1e-35 120.2 0.0 1.4 2 0 0 2 2 2 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|305662742|ref|YP_003859030.1| - 0.0063 15.7 0.2 0.12 11.5 0.1 2.4 1 1 1 2 2 2 1 Putative TM nitroreductase CbiA PF01656.18 gi|305662743|ref|YP_003859031.1| - 1.7e-24 86.3 0.0 2.5e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|305662743|ref|YP_003859031.1| - 8.9e-10 38.7 0.0 2.1e-09 37.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|305662743|ref|YP_003859031.1| - 1.5e-08 34.0 0.1 6.1e-07 28.7 0.0 2.2 1 1 1 2 2 2 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|305662743|ref|YP_003859031.1| - 0.00013 21.2 0.0 0.00019 20.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|305662743|ref|YP_003859031.1| - 0.00016 20.8 0.0 0.45 9.5 0.0 2.3 2 0 0 2 2 2 2 ATPase MipZ ATP_bind_1 PF03029.12 gi|305662743|ref|YP_003859031.1| - 0.0016 18.0 0.0 0.0033 17.0 0.0 1.5 1 1 0 1 1 1 1 Conserved hypothetical ATP binding protein YhjQ PF06564.7 gi|305662743|ref|YP_003859031.1| - 0.0023 17.3 0.0 0.017 14.4 0.0 2.0 1 1 0 1 1 1 1 YhjQ protein Vps55 PF04133.9 gi|305662744|ref|YP_003859032.1| - 0.072 12.8 2.7 0.12 12.0 0.2 2.0 1 1 1 2 2 2 0 Vacuolar protein sorting 55 NrfD PF03916.9 gi|305662746|ref|YP_003859034.1| - 0.0036 16.7 4.4 0.0048 16.3 3.1 1.2 1 0 0 1 1 1 1 Polysulphide reductase, NrfD PRA1 PF03208.14 gi|305662746|ref|YP_003859034.1| - 0.29 10.4 7.0 0.42 9.9 4.9 1.2 1 0 0 1 1 1 0 PRA1 family protein DUF4173 PF13777.1 gi|305662746|ref|YP_003859034.1| - 1.2 8.3 7.3 1.6 7.9 5.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4173) DUF2678 PF10856.3 gi|305662747|ref|YP_003859035.1| - 2.3 7.9 6.1 0.66 9.7 1.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2678) Glyco_hydro_31 PF01055.21 gi|305662748|ref|YP_003859036.1| - 5.8e-134 447.2 4.5 7.6e-134 446.8 2.3 1.7 2 0 0 2 2 2 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|305662748|ref|YP_003859036.1| - 1.2e-08 34.6 1.3 4.1e-08 32.9 0.2 2.4 2 0 0 2 2 2 1 Galactose mutarotase-like Raffinose_syn PF05691.7 gi|305662749|ref|YP_003859037.1| - 6.1e-41 139.7 4.5 3.3e-24 84.4 0.0 4.0 2 2 1 3 3 3 3 Raffinose synthase or seed imbibition protein Sip1 Melibiase PF02065.13 gi|305662749|ref|YP_003859037.1| - 1.5e-09 37.0 1.0 2.2e-09 36.4 0.7 1.2 1 0 0 1 1 1 1 Melibiase Glyco_hydro_31 PF01055.21 gi|305662749|ref|YP_003859037.1| - 0.00011 21.1 1.0 0.00018 20.4 0.7 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 DUF4434 PF14488.1 gi|305662750|ref|YP_003859038.1| - 1.2e-07 31.5 0.0 2.8e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) Cellulase PF00150.13 gi|305662750|ref|YP_003859038.1| - 1.6e-07 30.8 0.0 2.7e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42 PF02449.10 gi|305662750|ref|YP_003859038.1| - 0.00073 18.7 0.1 0.35 9.9 0.0 2.2 2 0 0 2 2 2 2 Beta-galactosidase AP_endonuc_2 PF01261.19 gi|305662750|ref|YP_003859038.1| - 0.002 17.4 0.0 0.0047 16.2 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_2_C PF02836.12 gi|305662750|ref|YP_003859038.1| - 0.0033 16.3 0.1 0.63 8.8 0.0 2.7 2 1 0 2 2 2 2 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_42M PF08532.5 gi|305662750|ref|YP_003859038.1| - 0.004 16.3 0.0 0.0086 15.2 0.0 1.5 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_1 PF00232.13 gi|305662750|ref|YP_003859038.1| - 0.013 13.7 0.0 0.027 12.6 0.0 1.5 2 0 0 2 2 2 0 Glycosyl hydrolase family 1 ADH_N PF08240.7 gi|305662751|ref|YP_003859039.1| - 1.5e-36 124.4 0.8 2.2e-36 123.9 0.5 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|305662751|ref|YP_003859039.1| - 1.8e-27 95.4 0.0 3e-27 94.7 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Pyr_redox PF00070.22 gi|305662751|ref|YP_003859039.1| - 0.0037 17.6 0.1 0.51 10.7 0.0 3.5 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|305662751|ref|YP_003859039.1| - 0.0043 16.2 0.0 0.0082 15.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|305662751|ref|YP_003859039.1| - 0.0073 15.6 0.1 0.019 14.3 0.0 1.8 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|305662751|ref|YP_003859039.1| - 0.0084 16.0 0.0 0.03 14.3 0.0 2.0 1 1 0 1 1 1 1 TrkA-N domain NADH_4Fe-4S PF10589.4 gi|305662751|ref|YP_003859039.1| - 0.0085 15.2 2.0 0.021 13.9 1.4 1.6 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Pyr_redox_3 PF13738.1 gi|305662751|ref|YP_003859039.1| - 0.044 13.8 0.0 0.073 13.1 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|305662751|ref|YP_003859039.1| - 0.079 12.7 0.1 0.24 11.1 0.0 1.8 1 1 1 2 2 2 0 ThiF family Gp_dh_N PF00044.19 gi|305662751|ref|YP_003859039.1| - 0.12 12.2 0.1 18 5.2 0.0 2.3 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Fe-ADH PF00465.14 gi|305662752|ref|YP_003859040.1| - 4e-49 167.2 0.0 6.2e-49 166.5 0.0 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|305662752|ref|YP_003859040.1| - 2.7e-26 92.4 0.0 3.7e-26 91.9 0.0 1.2 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|305662752|ref|YP_003859040.1| - 0.001 18.0 0.8 0.017 14.0 0.5 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase HTH_21 PF13276.1 gi|305662752|ref|YP_003859040.1| - 0.078 12.9 0.4 0.19 11.7 0.1 1.7 2 0 0 2 2 2 0 HTH-like domain Lactamase_B_2 PF12706.2 gi|305662753|ref|YP_003859041.1| - 8.4e-09 35.2 0.0 1.1e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|305662753|ref|YP_003859041.1| - 0.0011 18.6 0.0 0.0018 17.9 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305662753|ref|YP_003859041.1| - 0.021 14.5 0.2 0.35 10.5 0.1 2.2 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Sua5_yciO_yrdC PF01300.13 gi|305662754|ref|YP_003859042.1| - 3.3e-55 186.1 0.0 4.8e-54 182.3 0.0 2.0 2 0 0 2 2 2 1 Telomere recombination SUA5 PF03481.8 gi|305662754|ref|YP_003859042.1| - 5.2e-29 100.8 0.0 7.4e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Putative GTP-binding controlling metal-binding NTP_transf_2 PF01909.18 gi|305662755|ref|YP_003859043.1| - 0.00012 22.3 1.1 0.00036 20.7 0.1 2.3 1 1 1 2 2 2 1 Nucleotidyltransferase domain DUF1691 PF07950.6 gi|305662757|ref|YP_003859045.1| - 0.1 12.5 0.4 0.14 12.1 0.0 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1691) Pox_I5 PF04713.7 gi|305662757|ref|YP_003859045.1| - 1.9 8.2 7.0 8.3 6.1 1.3 2.3 1 1 1 2 2 2 0 Poxvirus protein I5 Nitroreductase PF00881.19 gi|305662758|ref|YP_003859046.1| - 1.5e-29 102.9 0.0 1.9e-29 102.6 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family Alba PF01918.16 gi|305662759|ref|YP_003859047.1| - 1.9e-05 24.1 0.3 3.5e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 Alba DUF998 PF06197.8 gi|305662760|ref|YP_003859048.1| - 2e-14 53.3 20.6 2.4e-14 53.0 14.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2721 PF11026.3 gi|305662760|ref|YP_003859048.1| - 0.014 14.9 8.3 0.014 14.9 5.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2721) CTP_transf_1 PF01148.15 gi|305662760|ref|YP_003859048.1| - 1 8.9 17.2 1.5 8.3 11.9 1.3 1 0 0 1 1 1 0 Cytidylyltransferase family ParBc PF02195.13 gi|305662761|ref|YP_003859049.1| - 4.4e-09 36.3 0.0 7.5e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 ParB-like nuclease domain AsmA_1 PF13109.1 gi|305662761|ref|YP_003859049.1| - 0.049 12.8 0.4 0.075 12.2 0.3 1.2 1 0 0 1 1 1 0 AsmA-like C-terminal region Na_H_Exchanger PF00999.16 gi|305662762|ref|YP_003859050.1| - 2.1e-48 164.7 56.4 2.7e-48 164.4 39.1 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Mrr_cat PF04471.7 gi|305662763|ref|YP_003859051.1| - 0.0004 20.1 0.0 0.00081 19.1 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease CobD_Cbib PF03186.8 gi|305662764|ref|YP_003859052.1| - 1.9e-77 260.2 4.3 2.4e-77 259.9 3.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.10 gi|305662765|ref|YP_003859053.1| - 6.9e-33 114.1 10.7 7.9e-33 113.9 7.4 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase DUF4149 PF13664.1 gi|305662765|ref|YP_003859053.1| - 0.5 10.4 5.9 1.5 8.9 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) RseC_MucC PF04246.7 gi|305662765|ref|YP_003859053.1| - 1.1 8.8 9.0 0.057 12.9 0.5 2.5 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DoxX_3 PF13781.1 gi|305662765|ref|YP_003859053.1| - 2.8 8.3 16.3 0.18 12.2 5.3 2.4 2 0 0 2 2 2 0 DoxX-like family Aminotran_1_2 PF00155.16 gi|305662766|ref|YP_003859054.1| - 5.1e-39 134.2 0.0 5.6e-39 134.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|305662766|ref|YP_003859054.1| - 0.021 13.5 0.0 0.49 9.0 0.0 2.5 2 1 0 2 2 2 0 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|305662766|ref|YP_003859054.1| - 0.036 13.2 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase NTP_transf_3 PF12804.2 gi|305662767|ref|YP_003859055.1| - 1.3e-09 38.3 0.0 1.8e-09 37.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|305662767|ref|YP_003859055.1| - 0.00032 20.2 0.0 0.025 14.0 0.0 2.3 2 1 0 2 2 2 2 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|305662767|ref|YP_003859055.1| - 0.061 12.6 0.2 0.3 10.3 0.1 1.9 1 1 0 1 1 1 0 Nucleotidyl transferase CbiZ PF01955.13 gi|305662768|ref|YP_003859056.1| - 2.8e-40 138.1 0.2 3.6e-40 137.7 0.1 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase PgpA PF04608.8 gi|305662768|ref|YP_003859056.1| - 0.0018 18.0 0.2 0.02 14.7 0.1 2.3 1 1 0 1 1 1 1 Phosphatidylglycerophosphatase A Microcin PF03526.8 gi|305662768|ref|YP_003859056.1| - 0.0059 16.1 0.3 0.026 14.1 0.1 2.1 2 0 0 2 2 2 1 Colicin E1 (microcin) immunity protein DBI_PRT PF02277.12 gi|305662769|ref|YP_003859057.1| - 8.8e-17 61.1 0.0 1.3e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyltransferase ATP_bind_4 PF01902.12 gi|305662770|ref|YP_003859058.1| - 7.7e-27 94.0 0.1 1.4e-26 93.2 0.1 1.4 1 1 0 1 1 1 1 ATP-binding region DUF460 PF04312.8 gi|305662770|ref|YP_003859058.1| - 0.043 13.3 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Asn_synthase PF00733.16 gi|305662771|ref|YP_003859059.1| - 4.4e-17 62.4 0.0 2.9e-15 56.4 0.0 2.0 1 1 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|305662771|ref|YP_003859059.1| - 0.00034 19.5 0.0 0.00049 19.0 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ParcG PF10274.4 gi|305662771|ref|YP_003859059.1| - 0.032 14.1 0.1 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Parkin co-regulated protein Orthopox_F14 PF06076.7 gi|305662771|ref|YP_003859059.1| - 0.12 12.4 0.2 0.76 9.8 0.1 2.4 1 1 0 1 1 1 0 Orthopoxvirus F14 protein Baculo_PEP_C PF04513.7 gi|305662772|ref|YP_003859060.1| - 0.047 13.5 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus EF1G PF00647.14 gi|305662772|ref|YP_003859060.1| - 0.066 12.9 0.2 0.16 11.6 0.1 1.7 1 0 0 1 1 1 0 Elongation factor 1 gamma, conserved domain Vpu PF00558.14 gi|305662772|ref|YP_003859060.1| - 0.63 9.6 4.5 0.15 11.5 0.2 2.2 3 0 0 3 3 3 0 Vpu protein Lactamase_B_3 PF13483.1 gi|305662773|ref|YP_003859061.1| - 1.7e-26 92.9 0.0 2.2e-26 92.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|305662773|ref|YP_003859061.1| - 1.9e-19 69.9 0.2 2.3e-19 69.7 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305662773|ref|YP_003859061.1| - 3.3e-11 43.2 3.2 4.2e-11 42.8 2.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.19 gi|305662774|ref|YP_003859062.1| - 4.9e-40 137.3 0.1 6e-40 137.0 0.1 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 STE PF02200.11 gi|305662774|ref|YP_003859062.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 STE like transcription factor DUF1512 PF07431.7 gi|305662775|ref|YP_003859063.1| - 2.4e-117 391.6 3.2 2.8e-117 391.4 2.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) KH_2 PF07650.12 gi|305662775|ref|YP_003859063.1| - 0.019 14.5 0.3 0.019 14.5 0.2 2.3 3 0 0 3 3 3 0 KH domain DUF3203 PF11462.3 gi|305662775|ref|YP_003859063.1| - 0.081 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) zf-C4_Topoisom PF01396.14 gi|305662776|ref|YP_003859064.1| - 0.0096 15.4 0.7 0.017 14.5 0.2 1.6 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger ATG27 PF09451.5 gi|305662776|ref|YP_003859064.1| - 0.019 14.1 0.3 0.021 14.0 0.2 1.2 1 0 0 1 1 1 0 Autophagy-related protein 27 Ogr_Delta PF04606.7 gi|305662776|ref|YP_003859064.1| - 0.024 14.2 0.1 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger DUF2500 PF10694.4 gi|305662776|ref|YP_003859064.1| - 0.034 14.1 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) ASFV_J13L PF05568.6 gi|305662776|ref|YP_003859064.1| - 0.047 13.2 0.5 0.079 12.4 0.4 1.3 1 0 0 1 1 1 0 African swine fever virus J13L protein Rifin_STEVOR PF02009.11 gi|305662776|ref|YP_003859064.1| - 0.085 12.4 2.4 0.13 11.9 1.7 1.2 1 0 0 1 1 1 0 Rifin/stevor family Spore_YhaL PF14147.1 gi|305662776|ref|YP_003859064.1| - 0.14 11.5 1.0 0.33 10.4 0.3 1.7 2 0 0 2 2 2 0 Sporulation protein YhaL TF_Zn_Ribbon PF08271.7 gi|305662776|ref|YP_003859064.1| - 0.27 10.5 1.3 1 8.7 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding Thioredoxin_8 PF13905.1 gi|305662778|ref|YP_003859066.1| - 0.0019 18.3 0.1 0.34 11.0 0.1 2.3 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_4 PF13462.1 gi|305662778|ref|YP_003859066.1| - 0.13 12.2 0.6 0.27 11.2 0.4 1.7 1 1 0 1 1 1 0 Thioredoxin HTH_AsnC-type PF13404.1 gi|305662779|ref|YP_003859067.1| - 6.5e-15 54.3 0.7 1e-14 53.7 0.5 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|305662779|ref|YP_003859067.1| - 4.9e-12 45.0 1.3 2.5e-11 42.7 0.3 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|305662779|ref|YP_003859067.1| - 1e-09 37.9 0.0 1.7e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|305662779|ref|YP_003859067.1| - 4.8e-06 26.1 0.7 5.2e-05 22.8 0.2 2.4 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|305662779|ref|YP_003859067.1| - 0.00049 19.7 0.2 0.00094 18.8 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|305662779|ref|YP_003859067.1| - 0.0005 19.7 0.0 0.00089 18.9 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|305662779|ref|YP_003859067.1| - 0.00052 19.6 0.2 0.0011 18.6 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|305662779|ref|YP_003859067.1| - 0.0014 18.1 0.2 0.0027 17.2 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|305662779|ref|YP_003859067.1| - 0.0021 17.6 0.1 0.005 16.4 0.1 1.5 2 0 0 2 2 2 1 MarR family Sigma70_r4_2 PF08281.7 gi|305662779|ref|YP_003859067.1| - 0.0037 16.6 0.1 0.007 15.7 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|305662779|ref|YP_003859067.1| - 0.04 13.5 0.4 0.1 12.2 0.3 1.7 1 1 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_IS630 PF01710.11 gi|305662779|ref|YP_003859067.1| - 0.077 12.6 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Transposase B-block_TFIIIC PF04182.7 gi|305662779|ref|YP_003859067.1| - 0.081 12.7 0.2 0.72 9.7 0.2 2.2 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.2 gi|305662779|ref|YP_003859067.1| - 0.095 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.22 gi|305662779|ref|YP_003859067.1| - 0.1 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|305662779|ref|YP_003859067.1| - 0.13 12.2 0.0 0.26 11.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PDT PF00800.13 gi|305662781|ref|YP_003859069.1| - 7.8e-63 211.3 0.0 1.3e-62 210.6 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|305662781|ref|YP_003859069.1| - 1.6e-05 24.2 0.0 7.3e-05 22.1 0.0 2.2 2 0 0 2 2 2 1 ACT domain CM_2 PF01817.16 gi|305662781|ref|YP_003859069.1| - 0.011 15.7 1.0 0.044 13.8 0.7 2.0 1 1 0 1 1 1 0 Chorismate mutase type II Flavin_Reduct PF01613.13 gi|305662782|ref|YP_003859070.1| - 1.2e-31 109.6 0.0 1.4e-31 109.4 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain DUF2139 PF09910.4 gi|305662783|ref|YP_003859071.1| - 9e-137 455.6 0.1 1.2e-136 455.2 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) AP_endonuc_2 PF01261.19 gi|305662784|ref|YP_003859072.1| - 1.4e-17 63.6 0.0 2.2e-17 63.0 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PfkB PF00294.19 gi|305662785|ref|YP_003859073.1| - 8.3e-59 199.1 0.0 9.9e-59 198.9 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PHP PF02811.14 gi|305662786|ref|YP_003859074.1| - 4.4e-09 36.3 0.1 1.2e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 PHP domain Spt5-NGN PF03439.8 gi|305662787|ref|YP_003859075.1| - 0.1 12.3 0.1 0.24 11.1 0.0 1.7 1 1 1 2 2 2 0 Early transcription elongation factor of RNA pol II, NGN section Glyco_hydro_2_N PF02837.13 gi|305662789|ref|YP_003859077.1| - 0.00043 19.8 0.3 0.008 15.7 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain AP_endonuc_2 PF01261.19 gi|305662790|ref|YP_003859078.1| - 2.3e-29 102.2 0.0 3.8e-29 101.5 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PhoU PF01895.14 gi|305662791|ref|YP_003859079.1| - 1.2e-17 64.0 8.2 3.7e-14 52.9 1.5 2.3 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|305662791|ref|YP_003859079.1| - 0.015 14.4 0.4 0.015 14.4 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function DUF47 Pox_VLTF3 PF04947.9 gi|305662791|ref|YP_003859079.1| - 0.096 12.1 0.5 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Poxvirus Late Transcription Factor VLTF3 like ABC_tran PF00005.22 gi|305662792|ref|YP_003859080.1| - 6e-32 110.8 0.0 7.7e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662792|ref|YP_003859080.1| - 7.8e-19 68.7 0.0 7.3e-11 42.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305662792|ref|YP_003859080.1| - 2.8e-08 33.2 0.0 4.7e-07 29.2 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305662792|ref|YP_003859080.1| - 2.3e-06 27.0 0.0 4.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|305662792|ref|YP_003859080.1| - 7.8e-06 25.1 0.0 0.005 15.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|305662792|ref|YP_003859080.1| - 3.6e-05 23.9 0.0 0.00036 20.6 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305662792|ref|YP_003859080.1| - 5.5e-05 23.9 0.1 0.00014 22.6 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|305662792|ref|YP_003859080.1| - 7.4e-05 23.1 0.0 0.00015 22.1 0.0 1.5 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|305662792|ref|YP_003859080.1| - 8.9e-05 21.2 0.0 0.012 14.2 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|305662792|ref|YP_003859080.1| - 0.00027 20.6 0.0 0.0018 18.0 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|305662792|ref|YP_003859080.1| - 0.00072 19.5 0.0 0.0018 18.2 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|305662792|ref|YP_003859080.1| - 0.0016 17.9 0.0 0.0055 16.1 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|305662792|ref|YP_003859080.1| - 0.0029 17.9 0.0 0.0064 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|305662792|ref|YP_003859080.1| - 0.0032 16.6 0.0 0.006 15.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|305662792|ref|YP_003859080.1| - 0.0039 16.9 0.1 0.006 16.3 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase SbcCD_C PF13558.1 gi|305662792|ref|YP_003859080.1| - 0.0069 16.2 0.0 0.082 12.8 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|305662792|ref|YP_003859080.1| - 0.0082 15.5 0.2 0.054 12.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|305662792|ref|YP_003859080.1| - 0.01 15.7 0.0 0.014 15.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305662792|ref|YP_003859080.1| - 0.016 14.7 0.0 0.038 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|305662792|ref|YP_003859080.1| - 0.018 14.7 0.0 0.039 13.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|305662792|ref|YP_003859080.1| - 0.03 13.7 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|305662792|ref|YP_003859080.1| - 0.031 13.1 0.0 0.054 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|305662792|ref|YP_003859080.1| - 0.033 13.0 0.0 0.069 11.9 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|305662792|ref|YP_003859080.1| - 0.037 13.6 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|305662792|ref|YP_003859080.1| - 0.041 13.8 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_14 PF13173.1 gi|305662792|ref|YP_003859080.1| - 0.043 13.7 0.0 0.15 11.9 0.0 1.9 2 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.6 gi|305662792|ref|YP_003859080.1| - 0.046 12.3 0.0 0.069 11.8 0.0 1.2 1 0 0 1 1 1 0 PrkA AAA domain cobW PF02492.14 gi|305662792|ref|YP_003859080.1| - 0.049 13.0 0.0 0.095 12.1 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|305662792|ref|YP_003859080.1| - 0.072 13.0 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|305662792|ref|YP_003859080.1| - 0.079 11.6 0.0 0.079 11.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NTPase_1 PF03266.10 gi|305662792|ref|YP_003859080.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 NTPase DUF87 PF01935.12 gi|305662792|ref|YP_003859080.1| - 0.11 12.2 0.1 0.32 10.7 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function DUF87 DUF3987 PF13148.1 gi|305662792|ref|YP_003859080.1| - 0.13 10.8 0.0 0.19 10.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) BPD_transp_1 PF00528.17 gi|305662794|ref|YP_003859082.1| - 4.5e-12 45.8 17.0 4.5e-12 45.8 11.8 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|305662795|ref|YP_003859083.1| - 1.4e-43 149.3 0.0 1.8e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|305662795|ref|YP_003859083.1| - 3.5e-08 33.5 0.0 4.7e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|305662795|ref|YP_003859083.1| - 8.4e-07 28.1 0.0 3.9e-06 25.9 0.0 1.9 1 1 0 1 1 1 1 PBP superfamily domain LysR_substrate PF03466.15 gi|305662795|ref|YP_003859083.1| - 0.059 12.4 0.0 0.09 11.8 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain B3_4 PF03483.12 gi|305662796|ref|YP_003859084.1| - 6.3e-25 87.6 0.0 1e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain 4HB_MCP_1 PF12729.2 gi|305662797|ref|YP_003859085.1| - 0.00019 20.8 6.2 0.00019 20.8 0.6 3.1 2 1 0 3 3 3 1 Four helix bundle sensory module for signal transduction RHH_1 PF01402.16 gi|305662797|ref|YP_003859085.1| - 0.0032 17.2 0.1 0.0032 17.2 0.1 3.3 4 1 0 4 4 2 1 Ribbon-helix-helix protein, copG family LUC7 PF03194.10 gi|305662797|ref|YP_003859085.1| - 0.0036 16.8 2.3 0.0084 15.6 0.3 2.2 2 1 0 2 2 2 1 LUC7 N_terminus WXG100 PF06013.7 gi|305662797|ref|YP_003859085.1| - 0.034 14.1 0.3 1.5e+02 2.4 0.0 3.8 3 1 1 4 4 3 0 Proteins of 100 residues with WXG Serine_rich PF08824.5 gi|305662797|ref|YP_003859085.1| - 0.041 13.5 1.4 0.087 12.5 0.1 2.1 3 0 0 3 3 3 0 Serine rich protein interaction domain NTS PF15447.1 gi|305662797|ref|YP_003859085.1| - 0.063 13.6 0.0 0.23 11.8 0.0 2.0 1 0 0 1 1 1 0 N-terminal segments of PfEMP1 CPSase_L_D3 PF02787.14 gi|305662797|ref|YP_003859085.1| - 0.066 12.9 1.2 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DUF310 PF03750.8 gi|305662797|ref|YP_003859085.1| - 0.086 13.0 5.4 0.085 13.0 1.1 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF310) DUF148 PF02520.12 gi|305662797|ref|YP_003859085.1| - 0.087 12.6 3.7 0.71 9.6 0.2 3.1 2 2 1 3 3 3 0 Domain of unknown function DUF148 Hormone_1 PF00103.15 gi|305662797|ref|YP_003859085.1| - 0.15 11.3 3.6 1.7 7.9 0.2 3.0 2 1 1 3 3 3 0 Somatotropin hormone family Peptidase_C65 PF10275.4 gi|305662797|ref|YP_003859085.1| - 0.2 11.0 1.9 0.32 10.3 0.6 2.0 1 1 1 2 2 2 0 Peptidase C65 Otubain BLOC1_2 PF10046.4 gi|305662797|ref|YP_003859085.1| - 0.21 11.7 7.7 0.11 12.7 0.5 3.2 4 0 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 WEMBL PF05701.6 gi|305662797|ref|YP_003859085.1| - 0.24 9.8 7.0 0.6 8.4 0.2 2.1 2 0 0 2 2 2 0 Weak chloroplast movement under blue light RE_TdeIII PF09520.5 gi|305662797|ref|YP_003859085.1| - 0.24 10.6 2.9 0.17 11.1 0.4 1.9 1 1 1 2 2 2 0 Type II restriction endonuclease, TdeIII Latarcin PF10279.4 gi|305662797|ref|YP_003859085.1| - 0.28 11.3 15.3 0.051 13.7 1.7 3.6 1 1 1 2 2 2 0 Latarcin precursor CorA PF01544.13 gi|305662797|ref|YP_003859085.1| - 0.33 9.9 11.9 2 7.3 0.4 2.1 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.7 gi|305662797|ref|YP_003859085.1| - 0.34 10.6 6.3 1 9.0 0.4 2.8 1 1 3 4 4 4 0 Laminin Domain II Syntaxin-6_N PF09177.6 gi|305662797|ref|YP_003859085.1| - 0.36 11.2 7.5 2.6 8.4 1.3 3.5 3 1 0 3 3 3 0 Syntaxin 6, N-terminal FH2 PF02181.18 gi|305662797|ref|YP_003859085.1| - 0.39 9.5 5.9 0.84 8.4 0.1 3.0 2 1 1 3 3 3 0 Formin Homology 2 Domain DUF4363 PF14276.1 gi|305662797|ref|YP_003859085.1| - 0.41 10.3 6.2 0.076 12.7 1.0 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4363) MerR-DNA-bind PF09278.6 gi|305662797|ref|YP_003859085.1| - 0.44 10.9 4.4 2.5 8.5 0.0 2.6 2 1 0 2 2 2 0 MerR, DNA binding DUF4618 PF15397.1 gi|305662797|ref|YP_003859085.1| - 0.57 9.4 6.0 4.2 6.6 1.9 2.9 2 1 0 2 2 2 0 Domain of unknown function (DUF4618) Colicin PF01024.14 gi|305662797|ref|YP_003859085.1| - 0.81 9.2 4.4 1.8 8.0 0.2 2.6 2 2 1 3 3 3 0 Colicin pore forming domain Fzo_mitofusin PF04799.8 gi|305662797|ref|YP_003859085.1| - 0.91 8.8 4.9 0.84 9.0 0.9 2.6 2 1 0 2 2 2 0 fzo-like conserved region GnsAB PF08178.6 gi|305662797|ref|YP_003859085.1| - 1.2 8.8 7.7 1.4 8.6 0.4 3.8 3 2 0 3 3 3 0 GnsA/GnsB family DUF4061 PF13270.1 gi|305662797|ref|YP_003859085.1| - 1.3 9.1 4.7 2.4 8.3 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4061) Fib_alpha PF08702.5 gi|305662797|ref|YP_003859085.1| - 2.2 8.4 5.7 6.8 6.8 0.9 2.7 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family Cation_efflux PF01545.16 gi|305662798|ref|YP_003859086.1| - 3e-37 128.2 3.2 3.7e-37 127.9 2.2 1.0 1 0 0 1 1 1 1 Cation efflux family DUF2626 PF11117.3 gi|305662798|ref|YP_003859086.1| - 0.98 9.8 6.5 0.21 11.9 0.8 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2626) MazG PF03819.12 gi|305662799|ref|YP_003859087.1| - 8.3e-13 48.0 0.1 1e-12 47.7 0.0 1.1 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain PRA-PH PF01503.12 gi|305662799|ref|YP_003859087.1| - 9.2e-07 29.0 0.1 1.1e-06 28.7 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG-like PF12643.2 gi|305662799|ref|YP_003859087.1| - 0.00011 22.0 0.0 0.00015 21.6 0.0 1.2 1 0 0 1 1 1 1 MazG-like family HHH_7 PF14635.1 gi|305662799|ref|YP_003859087.1| - 0.12 12.4 0.0 0.37 10.9 0.0 1.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif Tup_N PF08581.5 gi|305662800|ref|YP_003859088.1| - 0.58 10.3 4.7 0.81 9.9 1.6 2.4 2 1 0 2 2 2 0 Tup N-terminal AP_endonuc_2 PF01261.19 gi|305662801|ref|YP_003859089.1| - 3.1e-05 23.3 0.0 5e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Transaldolase PF00923.14 gi|305662802|ref|YP_003859090.1| - 2.8e-13 49.6 0.0 6.4e-13 48.4 0.0 1.5 1 1 0 1 1 1 1 Transaldolase mTERF PF02536.9 gi|305662802|ref|YP_003859090.1| - 0.16 10.4 2.2 2.8 6.4 0.1 2.9 2 1 1 3 3 3 0 mTERF DUF4147 PF13660.1 gi|305662803|ref|YP_003859091.1| - 3.9e-75 252.0 0.0 4.9e-75 251.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|305662803|ref|YP_003859091.1| - 5.1e-35 119.8 0.0 9.2e-35 119.0 0.0 1.5 1 0 0 1 1 1 1 MOFRL family Glyco_hydro_4 PF02056.11 gi|305662804|ref|YP_003859092.1| - 1.9e-44 151.1 0.0 3.1e-44 150.4 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|305662804|ref|YP_003859092.1| - 1.3e-32 113.4 0.1 2.4e-30 106.0 0.1 2.3 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|305662804|ref|YP_003859092.1| - 0.00088 19.1 0.0 0.2 11.4 0.0 2.6 2 1 0 2 2 2 2 lactate/malate dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|305662804|ref|YP_003859092.1| - 0.037 13.7 0.0 0.08 12.6 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_hydro_2_C PF02836.12 gi|305662805|ref|YP_003859093.1| - 1e-67 228.1 0.0 1.3e-67 227.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2_N PF02837.13 gi|305662805|ref|YP_003859093.1| - 6.7e-36 123.3 0.7 1.2e-35 122.5 0.2 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|305662805|ref|YP_003859093.1| - 3.8e-10 40.2 0.0 6.6e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 BetaGal_dom4_5 PF13364.1 gi|305662805|ref|YP_003859093.1| - 9.7e-07 29.0 0.3 1.7e-06 28.2 0.2 1.3 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Cellulase-like PF12876.2 gi|305662805|ref|YP_003859093.1| - 0.00039 20.8 0.3 0.026 14.9 0.0 3.4 3 1 1 4 4 4 1 Sugar-binding cellulase-like Glyco_hydro_cc PF11790.3 gi|305662805|ref|YP_003859093.1| - 0.0011 18.3 0.1 0.0019 17.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core DUF4434 PF14488.1 gi|305662805|ref|YP_003859093.1| - 0.1 12.3 0.0 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4434) VDE PF07137.6 gi|305662805|ref|YP_003859093.1| - 0.15 11.8 1.5 0.43 10.3 0.4 2.1 1 1 1 2 2 2 0 Violaxanthin de-epoxidase (VDE) 2-Hacid_dh_C PF02826.14 gi|305662806|ref|YP_003859094.1| - 5.2e-72 240.7 0.0 7.1e-72 240.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|305662806|ref|YP_003859094.1| - 7.3e-37 125.8 0.0 8.6e-37 125.5 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|305662806|ref|YP_003859094.1| - 6.6e-08 32.5 0.1 1.7e-07 31.1 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|305662806|ref|YP_003859094.1| - 0.00029 20.2 0.0 0.00051 19.4 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|305662806|ref|YP_003859094.1| - 0.0024 17.7 0.0 0.019 14.8 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Shikimate_DH PF01488.15 gi|305662806|ref|YP_003859094.1| - 0.028 14.5 0.1 0.064 13.3 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|305662806|ref|YP_003859094.1| - 0.041 14.2 0.0 0.085 13.3 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|305662806|ref|YP_003859094.1| - 0.042 13.5 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|305662806|ref|YP_003859094.1| - 0.083 13.4 0.0 0.23 11.9 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold XdhC_C PF13478.1 gi|305662806|ref|YP_003859094.1| - 0.085 13.1 0.0 0.22 11.8 0.0 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|305662807|ref|YP_003859095.1| - 1.9e-68 229.1 0.0 2.6e-68 228.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|305662807|ref|YP_003859095.1| - 3.6e-29 100.9 0.0 4.2e-29 100.6 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|305662807|ref|YP_003859095.1| - 1.2e-06 28.5 0.0 2.2e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|305662807|ref|YP_003859095.1| - 0.0016 18.7 0.0 0.0058 17.0 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|305662807|ref|YP_003859095.1| - 0.021 14.8 0.7 0.36 10.8 0.0 2.5 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.13 gi|305662807|ref|YP_003859095.1| - 0.026 14.1 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|305662807|ref|YP_003859095.1| - 0.093 13.0 0.0 0.2 11.9 0.0 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain HpcH_HpaI PF03328.9 gi|305662808|ref|YP_003859096.1| - 6.2e-35 120.0 0.0 7.6e-35 119.7 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF2156 PF09924.4 gi|305662808|ref|YP_003859096.1| - 0.013 14.3 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2156) B12-binding PF02310.14 gi|305662809|ref|YP_003859097.1| - 3.4e-31 107.6 0.6 6.7e-31 106.6 0.4 1.5 1 0 0 1 1 1 1 B12 binding domain B12-binding_2 PF02607.12 gi|305662809|ref|YP_003859097.1| - 2.8e-15 56.0 0.1 8.6e-15 54.5 0.0 1.9 2 0 0 2 2 2 1 B12 binding domain Peripla_BP_6 PF13458.1 gi|305662809|ref|YP_003859097.1| - 0.012 15.0 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 0 Periplasmic binding protein Rep_fac_C PF08542.6 gi|305662809|ref|YP_003859097.1| - 0.059 13.3 0.1 1.1 9.2 0.0 2.7 2 1 1 3 3 3 0 Replication factor C C-terminal domain AF2331-like PF14556.1 gi|305662809|ref|YP_003859097.1| - 0.067 13.5 0.6 2.4 8.5 0.0 2.4 1 1 1 2 2 2 0 AF2331-like Sm_multidrug_ex PF06695.6 gi|305662810|ref|YP_003859098.1| - 3.8e-29 101.3 2.0 5.6e-29 100.7 1.4 1.2 1 0 0 1 1 1 1 Putative small multi-drug export protein Ykof PF07615.6 gi|305662811|ref|YP_003859099.1| - 0.043 13.9 0.1 9.2 6.4 0.0 2.8 2 0 0 2 2 2 0 YKOF-related Family Aminotran_1_2 PF00155.16 gi|305662812|ref|YP_003859100.1| - 3.7e-71 239.9 0.0 4.2e-71 239.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|305662812|ref|YP_003859100.1| - 1.3e-09 37.3 0.0 2.4e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|305662812|ref|YP_003859100.1| - 7.8e-09 35.0 0.0 1.6e-08 33.9 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|305662812|ref|YP_003859100.1| - 1.5e-06 26.7 0.0 2.4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|305662812|ref|YP_003859100.1| - 4e-06 26.1 0.0 5.7e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase NTP_transf_3 PF12804.2 gi|305662813|ref|YP_003859101.1| - 1.2e-25 90.4 0.0 1.5e-25 90.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|305662813|ref|YP_003859101.1| - 0.00047 19.7 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|305662813|ref|YP_003859101.1| - 0.00053 19.3 0.0 0.00082 18.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|305662813|ref|YP_003859101.1| - 0.0031 17.1 0.0 0.0035 17.0 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.11 gi|305662813|ref|YP_003859101.1| - 0.0044 16.0 0.0 0.0067 15.4 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like DUF354 PF04007.7 gi|305662813|ref|YP_003859101.1| - 0.028 13.3 0.0 0.043 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) GXGXG PF01493.14 gi|305662814|ref|YP_003859102.1| - 6.4e-26 90.6 30.2 2.4e-13 49.5 4.2 2.9 1 1 2 3 3 3 2 GXGXG motif FxsA PF04186.8 gi|305662814|ref|YP_003859102.1| - 0.15 11.6 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein DUF4444 PF14563.1 gi|305662814|ref|YP_003859102.1| - 1.3 8.4 3.8 49 3.4 0.0 3.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4444) Molybdopterin PF00384.17 gi|305662815|ref|YP_003859103.1| - 1.9e-20 73.0 0.0 4.1e-20 71.9 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|305662815|ref|YP_003859103.1| - 3.8e-12 46.0 0.0 7.1e-12 45.1 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain TPP_enzyme_M PF00205.17 gi|305662815|ref|YP_003859103.1| - 0.022 14.5 0.3 2.5 7.8 0.1 3.0 2 1 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain UDG PF03167.14 gi|305662816|ref|YP_003859104.1| - 0.036 13.5 0.0 0.04 13.3 0.0 1.2 1 0 0 1 1 1 0 Uracil DNA glycosylase superfamily Repressor_Mnt PF11423.3 gi|305662816|ref|YP_003859104.1| - 3.2 7.1 4.7 1 8.7 0.1 2.3 3 0 0 3 3 3 0 Regulatory protein Mnt NTP_transferase PF00483.18 gi|305662817|ref|YP_003859105.1| - 4.7e-28 98.1 0.0 5.3e-28 97.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|305662817|ref|YP_003859105.1| - 4e-13 49.7 0.0 5.1e-13 49.4 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF3928 PF13065.1 gi|305662817|ref|YP_003859105.1| - 0.12 12.7 0.1 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3928) Fe-ADH PF00465.14 gi|305662818|ref|YP_003859106.1| - 1.3e-85 287.2 0.0 1.5e-85 287.0 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|305662818|ref|YP_003859106.1| - 3.2e-13 49.5 1.2 2.7e-09 36.7 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PG_binding_1 PF01471.13 gi|305662818|ref|YP_003859106.1| - 0.17 11.9 0.1 0.73 9.8 0.0 2.1 1 1 1 2 2 2 0 Putative peptidoglycan binding domain DNA_binding_1 PF01035.15 gi|305662821|ref|YP_003859109.1| - 1.9e-22 78.7 0.0 2.7e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain HTH_23 PF13384.1 gi|305662821|ref|YP_003859109.1| - 0.085 12.5 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Peptidase_M29 PF02073.10 gi|305662822|ref|YP_003859110.1| - 1.6e-108 363.0 0.0 1.8e-108 362.8 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Hist_deacetyl PF00850.14 gi|305662823|ref|YP_003859111.1| - 5.9e-74 249.1 0.0 7.4e-74 248.8 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain Polysacc_synt PF01943.12 gi|305662824|ref|YP_003859112.1| - 1.5e-24 86.7 34.8 1.5e-24 86.7 24.1 3.0 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|305662824|ref|YP_003859112.1| - 2.1e-12 47.0 50.4 1e-10 41.6 9.7 3.5 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|305662824|ref|YP_003859112.1| - 2.4e-11 43.5 22.8 2.4e-11 43.5 15.8 2.8 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein Romo1 PF10247.4 gi|305662824|ref|YP_003859112.1| - 0.076 13.2 6.1 3.1 8.0 0.1 4.0 4 0 0 4 4 4 0 Reactive mitochondrial oxygen species modulator 1 SpoV PF08183.6 gi|305662824|ref|YP_003859112.1| - 7.8 6.3 6.9 1.1 9.0 0.8 2.4 2 0 0 2 2 2 0 Stage V sporulation protein family MoCF_biosynth PF00994.19 gi|305662825|ref|YP_003859113.1| - 1.1e-21 76.7 0.0 1.4e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Rhomboid PF01694.17 gi|305662826|ref|YP_003859114.1| - 7.3e-32 110.4 20.5 7.3e-32 110.4 14.2 2.2 2 0 0 2 2 2 1 Rhomboid family DUF89 PF01937.14 gi|305662827|ref|YP_003859115.1| - 1.2e-35 122.9 0.6 1.5e-35 122.6 0.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF89 MatE PF01554.13 gi|305662828|ref|YP_003859116.1| - 2e-46 157.5 38.0 1.2e-26 93.2 6.2 2.7 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|305662828|ref|YP_003859116.1| - 4.1e-11 42.8 42.9 4.8e-10 39.4 9.7 4.4 2 1 1 4 4 4 3 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|305662828|ref|YP_003859116.1| - 1.4e-08 33.6 5.7 1.4e-08 33.6 4.0 3.4 2 2 0 2 2 2 1 MviN-like protein MoCF_biosynth PF00994.19 gi|305662829|ref|YP_003859117.1| - 3.5e-29 101.0 0.0 5.4e-29 100.4 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Glyco_transf_52 PF07922.6 gi|305662829|ref|YP_003859117.1| - 0.012 14.6 0.7 0.018 14.1 0.5 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 52 MtrH PF02007.13 gi|305662830|ref|YP_003859118.1| - 2.1e-80 269.9 0.0 2.5e-80 269.6 0.0 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase MtrH subunit NUDIX PF00293.23 gi|305662832|ref|YP_003859120.1| - 2.3e-17 62.8 0.0 2.9e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Amidohydro_1 PF01979.15 gi|305662833|ref|YP_003859121.1| - 1e-11 45.1 1.2 8e-11 42.1 0.8 2.3 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|305662833|ref|YP_003859121.1| - 8.1e-11 42.4 0.0 5.1e-10 39.8 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|305662833|ref|YP_003859121.1| - 1.7e-10 40.5 1.5 3.4e-10 39.5 0.1 2.3 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|305662833|ref|YP_003859121.1| - 0.0016 17.7 0.2 0.043 13.0 0.1 2.2 2 0 0 2 2 2 1 Amidohydrolase family Glyco_hydro_20 PF00728.17 gi|305662835|ref|YP_003859123.1| - 4.9e-32 111.4 0.0 8.4e-32 110.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain HypA PF01155.14 gi|305662836|ref|YP_003859124.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|305662836|ref|YP_003859124.1| - 0.016 15.1 0.4 0.016 15.1 0.3 1.8 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|305662836|ref|YP_003859124.1| - 0.019 14.1 2.0 0.057 12.6 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|305662836|ref|YP_003859124.1| - 0.053 13.8 0.5 0.053 13.8 0.3 1.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF329 PF03884.9 gi|305662836|ref|YP_003859124.1| - 0.14 11.7 0.8 0.32 10.5 0.6 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF329) DNA_RNApol_7kD PF03604.8 gi|305662836|ref|YP_003859124.1| - 0.18 11.3 2.4 0.38 10.2 1.6 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-FCS PF06467.9 gi|305662836|ref|YP_003859124.1| - 0.43 10.2 4.6 23 4.7 3.2 2.6 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif zf-P11 PF03854.9 gi|305662836|ref|YP_003859124.1| - 0.92 9.0 5.5 0.76 9.3 2.4 1.9 1 1 1 2 2 2 0 P-11 zinc finger Zn_Tnp_IS1 PF03811.8 gi|305662836|ref|YP_003859124.1| - 2.5 7.6 4.6 16 5.0 0.9 2.4 2 0 0 2 2 2 0 InsA N-terminal domain TF_Zn_Ribbon PF08271.7 gi|305662836|ref|YP_003859124.1| - 3.4 7.0 5.7 0.8 9.0 0.8 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding Vps35 PF03635.12 gi|305662837|ref|YP_003859125.1| - 0.039 12.1 1.0 0.04 12.0 0.7 1.0 1 0 0 1 1 1 0 Vacuolar protein sorting-associated protein 35 NusA_N PF08529.6 gi|305662837|ref|YP_003859125.1| - 0.048 13.6 1.6 0.088 12.8 1.1 1.5 1 1 0 1 1 1 0 NusA N-terminal domain Dimer_Tnp_Tn5 PF02281.11 gi|305662837|ref|YP_003859125.1| - 0.084 12.9 0.0 0.1 12.7 0.0 1.1 1 0 0 1 1 1 0 Transposase Tn5 dimerisation domain TFIIS_C PF01096.13 gi|305662838|ref|YP_003859126.1| - 3e-22 77.9 12.3 4.9e-21 74.0 2.9 3.1 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|305662838|ref|YP_003859126.1| - 4e-09 36.0 1.3 2.8e-05 23.8 0.0 2.9 2 2 0 2 2 2 2 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|305662838|ref|YP_003859126.1| - 4.3e-08 32.3 6.8 0.00084 18.6 0.2 2.8 2 1 0 2 2 2 2 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|305662838|ref|YP_003859126.1| - 2.9e-07 30.1 15.2 0.00052 19.7 3.0 2.5 2 1 0 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|305662838|ref|YP_003859126.1| - 1.2e-06 28.2 8.5 0.0014 18.3 0.3 2.5 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305662838|ref|YP_003859126.1| - 1.7e-06 27.0 11.7 0.32 10.2 0.1 4.2 4 0 0 4 4 4 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|305662838|ref|YP_003859126.1| - 1.8e-06 27.8 8.2 0.33 10.9 0.1 4.3 4 0 0 4 4 4 2 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|305662838|ref|YP_003859126.1| - 4.2e-06 26.3 11.4 1.4e-05 24.7 2.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|305662838|ref|YP_003859126.1| - 4.7e-05 22.7 15.2 0.085 12.3 1.9 3.9 3 1 1 4 4 4 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|305662838|ref|YP_003859126.1| - 6.1e-05 22.5 9.3 0.018 14.7 0.8 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain UPF0547 PF10571.4 gi|305662838|ref|YP_003859126.1| - 0.00019 21.0 14.4 0.009 15.6 2.0 3.8 2 2 0 2 2 2 1 Uncharacterised protein family UPF0547 Terminase_GpA PF05876.7 gi|305662838|ref|YP_003859126.1| - 0.00025 19.5 3.0 0.00025 19.5 2.1 2.0 2 0 0 2 2 2 1 Phage terminase large subunit (GpA) DNA_RNApol_7kD PF03604.8 gi|305662838|ref|YP_003859126.1| - 0.00067 19.0 6.7 0.16 11.4 0.8 3.3 3 0 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|305662838|ref|YP_003859126.1| - 0.00076 18.9 12.8 0.9 9.1 0.0 4.2 4 0 0 4 4 4 1 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.5 gi|305662838|ref|YP_003859126.1| - 0.00093 19.0 4.9 0.35 10.8 0.2 2.4 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|305662838|ref|YP_003859126.1| - 0.0019 17.6 2.7 1.1 8.8 0.1 3.1 3 0 0 3 3 3 1 Ribosomal protein S27 Rubredoxin PF00301.15 gi|305662838|ref|YP_003859126.1| - 0.0026 17.5 9.1 0.64 9.9 0.0 4.1 4 0 0 4 4 4 1 Rubredoxin Zn_ribbon_recom PF13408.1 gi|305662838|ref|YP_003859126.1| - 0.0028 17.8 11.2 0.027 14.7 0.6 3.1 2 1 0 2 2 2 1 Recombinase zinc beta ribbon domain Rpr2 PF04032.11 gi|305662838|ref|YP_003859126.1| - 0.0038 17.0 8.5 0.23 11.3 1.6 3.0 1 1 2 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Desulfoferrod_N PF06397.7 gi|305662838|ref|YP_003859126.1| - 0.011 15.1 5.3 0.36 10.2 0.1 3.0 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-ISL3 PF14690.1 gi|305662838|ref|YP_003859126.1| - 0.013 15.5 13.7 0.8 9.7 0.1 4.0 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 C1_1 PF00130.17 gi|305662838|ref|YP_003859126.1| - 0.016 14.8 1.1 0.016 14.8 0.8 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.16 gi|305662838|ref|YP_003859126.1| - 0.018 14.9 9.3 0.15 11.9 0.7 3.0 2 1 0 2 2 2 0 IBR domain HypA PF01155.14 gi|305662838|ref|YP_003859126.1| - 0.02 14.5 9.2 0.12 12.0 3.2 2.7 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-tcix PF14952.1 gi|305662838|ref|YP_003859126.1| - 0.027 13.8 13.9 0.74 9.1 0.0 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_5 PF13719.1 gi|305662838|ref|YP_003859126.1| - 0.048 13.2 19.7 0.15 11.7 0.4 4.2 3 2 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|305662838|ref|YP_003859126.1| - 0.055 13.1 19.6 0.16 11.6 0.4 4.2 3 2 0 3 3 3 0 zinc-ribbon domain zf-C4_Topoisom PF01396.14 gi|305662838|ref|YP_003859126.1| - 0.058 12.9 12.4 2.8 7.4 0.1 3.7 3 1 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF2296 PF10058.4 gi|305662838|ref|YP_003859126.1| - 0.059 13.1 11.6 0.7 9.6 0.1 3.9 3 1 0 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) DUF3797 PF12677.2 gi|305662838|ref|YP_003859126.1| - 0.059 13.0 12.0 0.76 9.4 0.3 3.6 2 2 1 4 4 4 0 Domain of unknown function (DUF3797) zinc-ribbons_6 PF07191.7 gi|305662838|ref|YP_003859126.1| - 0.087 12.6 8.7 0.19 11.5 0.2 2.7 2 1 0 2 2 2 0 zinc-ribbons GFA PF04828.9 gi|305662838|ref|YP_003859126.1| - 0.088 12.7 11.3 7.1 6.6 0.1 4.0 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme IPT PF01745.11 gi|305662838|ref|YP_003859126.1| - 0.09 11.9 0.0 0.095 11.8 0.0 1.1 1 0 0 1 1 1 0 Isopentenyl transferase DUF329 PF03884.9 gi|305662838|ref|YP_003859126.1| - 0.12 11.9 10.2 10 5.7 0.1 4.1 3 1 1 4 4 4 0 Domain of unknown function (DUF329) Lar_restr_allev PF14354.1 gi|305662838|ref|YP_003859126.1| - 0.14 12.5 11.0 0.74 10.1 2.7 3.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar FYDLN_acid PF09538.5 gi|305662838|ref|YP_003859126.1| - 0.19 12.2 4.8 2.3 8.8 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function (FYDLN_acid) Ribosomal_L37e PF01907.14 gi|305662838|ref|YP_003859126.1| - 0.2 11.4 8.1 3.9 7.3 0.0 3.2 3 0 0 3 3 3 0 Ribosomal protein L37e zf-C2H2_4 PF13894.1 gi|305662838|ref|YP_003859126.1| - 0.28 11.5 11.1 37 4.9 0.0 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.5 gi|305662838|ref|YP_003859126.1| - 0.29 10.6 10.5 3.3 7.2 0.0 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain zf-CHY PF05495.7 gi|305662838|ref|YP_003859126.1| - 0.3 11.2 7.7 2.4 8.3 0.9 2.6 1 1 1 2 2 2 0 CHY zinc finger DUF1451 PF07295.6 gi|305662838|ref|YP_003859126.1| - 0.33 10.7 7.2 0.45 10.2 0.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1451) zf-TFIIB PF13453.1 gi|305662838|ref|YP_003859126.1| - 0.4 9.9 16.4 2.3 7.5 3.5 3.4 2 2 0 2 2 2 0 Transcription factor zinc-finger SprT-like PF10263.4 gi|305662838|ref|YP_003859126.1| - 0.43 10.2 4.9 4.5 6.9 3.4 2.0 1 1 0 1 1 1 0 SprT-like family DUF2082 PF09855.4 gi|305662838|ref|YP_003859126.1| - 0.44 10.4 12.5 0.61 9.9 0.1 4.0 3 1 1 4 4 4 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) TerY-C PF15616.1 gi|305662838|ref|YP_003859126.1| - 0.44 10.4 8.4 4.1 7.3 2.0 2.7 1 1 1 2 2 2 0 TerY-C metal binding domain PADR1 PF08063.7 gi|305662838|ref|YP_003859126.1| - 0.5 9.7 8.7 1.6 8.1 1.3 3.0 3 0 0 3 3 3 0 PADR1 (NUC008) domain Cys_rich_KTR PF14205.1 gi|305662838|ref|YP_003859126.1| - 0.62 9.5 10.5 5.2 6.6 0.1 4.0 4 1 0 4 4 4 0 Cysteine-rich KTR Ribosomal_S14 PF00253.16 gi|305662838|ref|YP_003859126.1| - 0.74 9.2 4.1 1.1 8.7 0.0 2.5 3 0 0 3 3 2 0 Ribosomal protein S14p/S29e PolC_DP2 PF03833.8 gi|305662838|ref|YP_003859126.1| - 0.78 7.3 4.7 0.23 9.0 0.6 1.8 1 1 1 2 2 2 0 DNA polymerase II large subunit DP2 Baculo_LEF5_C PF11792.3 gi|305662838|ref|YP_003859126.1| - 1 8.8 0.0 1 8.8 0.0 3.2 4 0 0 4 4 3 0 Baculoviridae late expression factor 5 C-terminal domain Ogr_Delta PF04606.7 gi|305662838|ref|YP_003859126.1| - 1 9.0 16.5 15 5.3 0.2 4.2 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger zf-MYND PF01753.13 gi|305662838|ref|YP_003859126.1| - 1.2 9.1 8.6 4.7 7.1 0.5 3.0 2 1 0 2 2 2 0 MYND finger zf-Mss51 PF13824.1 gi|305662838|ref|YP_003859126.1| - 1.3 8.9 10.7 8 6.4 0.4 2.8 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-DNA_Pol PF08996.5 gi|305662838|ref|YP_003859126.1| - 1.5 8.1 4.3 0.81 9.0 0.1 2.2 2 1 0 2 2 2 0 DNA Polymerase alpha zinc finger DUF1610 PF07754.6 gi|305662838|ref|YP_003859126.1| - 1.6 8.9 21.9 1.7 8.7 0.7 4.2 4 0 0 4 4 4 0 Domain of unknown function (DUF1610) Tnp_zf-ribbon_2 PF13842.1 gi|305662838|ref|YP_003859126.1| - 1.9 8.9 13.4 4 7.9 0.1 3.5 3 1 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-H2C2_2 PF13465.1 gi|305662838|ref|YP_003859126.1| - 2.1 8.7 14.4 3.8 7.9 0.5 4.2 4 1 0 4 4 4 0 Zinc-finger double domain zf-HIT PF04438.11 gi|305662838|ref|YP_003859126.1| - 2.3 7.9 19.2 4.4 7.0 0.6 4.1 4 0 0 4 4 4 0 HIT zinc finger DUF1178 PF06676.6 gi|305662838|ref|YP_003859126.1| - 2.5 8.3 6.0 4.4 7.4 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1178) DUF35_N PF12172.3 gi|305662838|ref|YP_003859126.1| - 2.6 8.0 14.0 3.6 7.6 0.2 4.2 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_ligase_ZBD PF03119.11 gi|305662838|ref|YP_003859126.1| - 2.7 7.7 16.2 2.7 7.7 0.2 3.9 4 0 0 4 4 3 0 NAD-dependent DNA ligase C4 zinc finger domain Mut7-C PF01927.11 gi|305662838|ref|YP_003859126.1| - 3 7.8 7.7 1.8 8.5 0.4 2.4 1 1 1 2 2 2 0 Mut7-C RNAse domain Ribosomal_L32p PF01783.18 gi|305662838|ref|YP_003859126.1| - 3.2 8.0 10.1 8.6 6.6 0.1 3.6 2 2 1 3 3 3 0 Ribosomal L32p protein family FYVE PF01363.16 gi|305662838|ref|YP_003859126.1| - 3.2 7.6 9.4 41 4.1 6.5 2.5 1 1 0 1 1 1 0 FYVE zinc finger zf-CSL PF05207.8 gi|305662838|ref|YP_003859126.1| - 3.6 7.1 7.9 2.9 7.4 0.1 2.7 2 1 0 2 2 2 0 CSL zinc finger Rep_fac-A_C PF08646.5 gi|305662838|ref|YP_003859126.1| - 3.9 7.1 6.6 1.7 8.3 0.3 2.5 1 1 0 2 2 2 0 Replication factor-A C terminal domain Nudix_N_2 PF14803.1 gi|305662838|ref|YP_003859126.1| - 4.1 7.1 14.0 27 4.5 0.1 4.2 3 1 1 4 4 4 0 Nudix N-terminal zf-RING_4 PF14570.1 gi|305662838|ref|YP_003859126.1| - 4.9 6.8 12.9 21 4.8 0.1 3.8 3 1 0 3 3 3 0 RING/Ubox like zinc-binding domain zf-RING_3 PF14369.1 gi|305662838|ref|YP_003859126.1| - 5 7.2 12.4 11 6.1 0.0 3.9 3 1 0 3 3 3 0 zinc-finger DnaJ_CXXCXGXG PF00684.14 gi|305662838|ref|YP_003859126.1| - 7.7 6.6 7.6 29 4.7 0.2 3.0 2 1 1 3 3 3 0 DnaJ central domain FdhE PF04216.7 gi|305662838|ref|YP_003859126.1| - 8 6.0 9.4 0.18 11.4 0.7 2.0 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation VP_N-CPKC PF11475.3 gi|305662838|ref|YP_003859126.1| - 8.9 5.9 11.4 24 4.5 0.1 3.4 3 0 0 3 3 3 0 Virion protein N terminal domain CpXC PF14353.1 gi|305662838|ref|YP_003859126.1| - 8.9 6.2 13.0 55 3.7 0.1 3.9 2 2 1 3 3 3 0 CpXC protein zf-RING_5 PF14634.1 gi|305662838|ref|YP_003859126.1| - 9.7 6.0 12.1 11 5.8 1.6 2.8 2 2 0 2 2 2 0 zinc-RING finger domain PUA PF01472.15 gi|305662839|ref|YP_003859127.1| - 0.0091 15.7 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 1 PUA domain Nol1_Nop2_Fmu_2 PF13636.1 gi|305662839|ref|YP_003859127.1| - 0.012 15.6 0.0 0.019 15.0 0.0 1.2 1 0 0 1 1 1 0 pre-rRNA processing and ribosome biogenesis Nitroreductase PF00881.19 gi|305662840|ref|YP_003859128.1| - 1.5e-27 96.4 0.0 1.7e-27 96.2 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family PhoU PF01895.14 gi|305662841|ref|YP_003859129.1| - 4e-13 49.6 11.9 3.7e-12 46.5 1.9 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|305662841|ref|YP_003859129.1| - 8e-05 22.2 0.0 0.00019 21.0 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DeoC PF01791.4 gi|305662842|ref|YP_003859130.1| - 1.9e-34 118.9 0.0 2.3e-34 118.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PcrB PF01884.12 gi|305662842|ref|YP_003859130.1| - 0.0029 16.9 0.7 0.39 9.9 0.1 2.4 2 1 0 2 2 2 2 PcrB family Peripla_BP_6 PF13458.1 gi|305662842|ref|YP_003859130.1| - 0.0053 16.1 0.0 0.012 14.9 0.0 1.6 1 1 0 1 1 1 1 Periplasmic binding protein ThiG PF05690.9 gi|305662842|ref|YP_003859130.1| - 0.0072 15.4 0.1 0.015 14.3 0.1 1.6 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG PA PF02225.17 gi|305662842|ref|YP_003859130.1| - 0.012 15.3 0.0 0.043 13.5 0.0 1.9 2 0 0 2 2 2 0 PA domain Pilus_CpaD PF09476.5 gi|305662842|ref|YP_003859130.1| - 0.059 12.8 0.0 0.086 12.3 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) RibD_C PF01872.12 gi|305662842|ref|YP_003859130.1| - 0.099 12.2 0.0 0.41 10.2 0.0 1.9 2 0 0 2 2 2 0 RibD C-terminal domain PfkB PF00294.19 gi|305662843|ref|YP_003859131.1| - 4.9e-56 190.0 0.1 6.4e-56 189.6 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|305662843|ref|YP_003859131.1| - 1.1e-09 37.8 0.1 1.5e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Hydrolase_3 PF08282.7 gi|305662844|ref|YP_003859132.1| - 4.5e-34 118.1 0.4 1.5e-22 80.3 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|305662844|ref|YP_003859132.1| - 6e-13 48.6 0.0 1.2e-11 44.3 0.0 2.0 1 1 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|305662844|ref|YP_003859132.1| - 1.1e-06 28.9 0.0 3.6e-05 24.0 0.0 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|305662844|ref|YP_003859132.1| - 0.00017 22.1 2.4 1.2 9.5 0.0 3.0 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase GGDN PF05165.7 gi|305662844|ref|YP_003859132.1| - 0.045 12.7 0.1 0.25 10.3 0.0 2.1 1 1 1 2 2 2 0 GGDN family Hydrolase_like PF13242.1 gi|305662844|ref|YP_003859132.1| - 0.12 12.0 0.3 0.25 11.0 0.2 1.5 1 0 0 1 1 1 0 HAD-hyrolase-like NinE PF05322.6 gi|305662845|ref|YP_003859133.1| - 0.057 13.1 0.5 0.078 12.7 0.3 1.2 1 0 0 1 1 1 0 NINE Protein Fe-ADH PF00465.14 gi|305662846|ref|YP_003859134.1| - 9.6e-89 297.5 0.0 1.2e-88 297.2 0.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|305662846|ref|YP_003859134.1| - 7.9e-11 41.7 0.2 4e-09 36.1 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase PfkB PF00294.19 gi|305662847|ref|YP_003859135.1| - 4.1e-15 55.7 0.0 7.1e-15 54.9 0.0 1.4 2 0 0 2 2 2 1 pfkB family carbohydrate kinase MFS_1 PF07690.11 gi|305662848|ref|YP_003859136.1| - 5.3e-28 97.7 35.4 4.9e-14 51.7 12.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|305662848|ref|YP_003859136.1| - 8.6e-13 47.6 30.8 7e-07 28.1 6.0 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|305662848|ref|YP_003859136.1| - 0.0013 17.0 9.8 0.0023 16.1 6.5 1.6 1 1 1 2 2 2 1 Transmembrane secretion effector MFS_1_like PF12832.2 gi|305662848|ref|YP_003859136.1| - 0.0048 16.6 0.0 0.0048 16.6 0.0 4.6 6 0 0 6 6 6 1 MFS_1 like family ATPase_gene1 PF09527.5 gi|305662850|ref|YP_003859138.1| - 0.017 14.9 4.8 0.017 14.9 3.4 2.2 2 0 0 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) FUN14 PF04930.10 gi|305662850|ref|YP_003859138.1| - 0.75 10.1 8.4 1.3 9.3 3.5 2.2 2 0 0 2 2 2 0 FUN14 family DUF2755 PF10954.3 gi|305662850|ref|YP_003859138.1| - 0.77 9.4 8.2 0.074 12.7 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2755) DUF3487 PF11990.3 gi|305662850|ref|YP_003859138.1| - 1.7 8.0 14.2 0.073 12.4 3.7 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF3487) DUF751 PF05421.6 gi|305662850|ref|YP_003859138.1| - 6.8 7.0 16.4 0.78 10.0 0.2 3.8 1 1 2 3 3 3 0 Protein of unknown function (DUF751) Bac_export_3 PF01313.14 gi|305662850|ref|YP_003859138.1| - 9.4 5.9 10.3 0.25 11.0 0.5 2.5 2 1 0 2 2 2 0 Bacterial export proteins, family 3 KaiC PF06745.8 gi|305662851|ref|YP_003859139.1| - 1.1e-32 113.0 1.2 1.2e-32 112.8 0.0 1.6 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|305662851|ref|YP_003859139.1| - 3.2e-07 29.9 0.0 5.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|305662851|ref|YP_003859139.1| - 8.3e-07 27.6 0.2 1.9e-05 23.2 0.2 2.1 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|305662851|ref|YP_003859139.1| - 0.0002 20.3 0.0 0.00032 19.6 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|305662851|ref|YP_003859139.1| - 0.00044 20.3 0.0 0.0012 18.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain Arch_ATPase PF01637.13 gi|305662851|ref|YP_003859139.1| - 0.0009 19.0 0.1 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|305662851|ref|YP_003859139.1| - 0.0013 18.4 0.0 0.0045 16.7 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_10 PF12846.2 gi|305662851|ref|YP_003859139.1| - 0.0043 16.5 0.0 0.0069 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain ABC_tran PF00005.22 gi|305662851|ref|YP_003859139.1| - 0.0053 17.0 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|305662851|ref|YP_003859139.1| - 0.0059 17.0 0.0 0.015 15.7 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein AAA_14 PF13173.1 gi|305662851|ref|YP_003859139.1| - 0.0082 16.0 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|305662851|ref|YP_003859139.1| - 0.011 15.5 0.0 0.027 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|305662851|ref|YP_003859139.1| - 0.012 15.5 0.0 0.031 14.2 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|305662851|ref|YP_003859139.1| - 0.017 14.8 0.1 0.039 13.5 0.1 1.8 1 1 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|305662851|ref|YP_003859139.1| - 0.028 14.0 0.1 0.074 12.6 0.0 1.7 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_17 PF13207.1 gi|305662851|ref|YP_003859139.1| - 0.056 14.2 2.0 0.94 10.3 0.7 2.9 2 2 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|305662851|ref|YP_003859139.1| - 0.07 12.7 0.1 0.21 11.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305662851|ref|YP_003859139.1| - 0.1 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain GTP_EFTU PF00009.22 gi|305662851|ref|YP_003859139.1| - 0.11 11.9 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain DUF258 PF03193.11 gi|305662851|ref|YP_003859139.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|305662851|ref|YP_003859139.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FtsK_SpoIIIE PF01580.13 gi|305662851|ref|YP_003859139.1| - 0.19 11.1 0.3 0.38 10.2 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF2075 PF09848.4 gi|305662851|ref|YP_003859139.1| - 0.19 10.6 0.0 0.28 10.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) DsbD PF02683.10 gi|305662852|ref|YP_003859140.1| - 3.2e-15 56.3 17.5 3.2e-15 56.3 12.1 1.6 2 0 0 2 2 2 1 Cytochrome C biogenesis protein transmembrane region DUF4129 PF13559.1 gi|305662853|ref|YP_003859141.1| - 0.12 12.4 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF3753 PF12575.3 gi|305662853|ref|YP_003859141.1| - 0.58 10.0 9.5 0.17 11.6 3.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) SieB PF14163.1 gi|305662853|ref|YP_003859141.1| - 0.59 9.7 4.8 0.92 9.0 3.3 1.5 1 1 0 1 1 1 0 Superinfection exclusion protein B ASFV_J13L PF05568.6 gi|305662853|ref|YP_003859141.1| - 1.3 8.5 3.8 1.9 7.9 2.6 1.2 1 0 0 1 1 1 0 African swine fever virus J13L protein Sec61_beta PF03911.11 gi|305662853|ref|YP_003859141.1| - 1.6 8.5 5.8 3.1 7.6 4.0 1.5 1 0 0 1 1 1 0 Sec61beta family DUF4350 PF14258.1 gi|305662854|ref|YP_003859142.1| - 9.1e-06 25.7 0.0 2.2e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|305662854|ref|YP_003859142.1| - 0.019 14.4 0.0 0.028 13.8 0.0 1.1 1 0 0 1 1 1 0 ABC-type uncharacterized transport system AAA_3 PF07726.6 gi|305662855|ref|YP_003859143.1| - 2.2e-62 208.4 0.1 3.8e-62 207.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305662855|ref|YP_003859143.1| - 1.3e-17 63.8 0.0 5e-17 61.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|305662855|ref|YP_003859143.1| - 7.8e-10 38.0 0.0 2.8e-05 23.0 0.0 2.4 1 1 1 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|305662855|ref|YP_003859143.1| - 9.3e-08 32.3 0.0 2.1e-07 31.2 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|305662855|ref|YP_003859143.1| - 1.4e-07 31.1 0.1 4e-05 23.1 0.0 2.3 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|305662855|ref|YP_003859143.1| - 1.5e-06 27.4 0.2 1.6e-05 24.0 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|305662855|ref|YP_003859143.1| - 2.2e-06 27.0 0.4 0.041 13.0 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|305662855|ref|YP_003859143.1| - 0.04 13.9 0.0 1.5 8.7 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain DUF58 PF01882.13 gi|305662856|ref|YP_003859144.1| - 9.6e-13 48.0 0.1 1.8e-12 47.2 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 TrbC PF04956.8 gi|305662858|ref|YP_003859146.1| - 0.033 14.1 2.5 0.042 13.8 1.8 1.2 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF1129 PF06570.6 gi|305662858|ref|YP_003859146.1| - 0.034 13.4 3.1 0.035 13.3 2.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) Cation_efflux PF01545.16 gi|305662858|ref|YP_003859146.1| - 0.041 12.9 4.9 0.043 12.8 3.4 1.0 1 0 0 1 1 1 0 Cation efflux family Vma12 PF11712.3 gi|305662858|ref|YP_003859146.1| - 0.16 11.6 2.9 0.16 11.6 2.0 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase IncA PF04156.9 gi|305662858|ref|YP_003859146.1| - 0.18 11.3 4.5 0.2 11.2 3.1 1.1 1 0 0 1 1 1 0 IncA protein PAP2 PF01569.16 gi|305662858|ref|YP_003859146.1| - 0.29 10.8 1.5 0.3 10.7 1.0 1.0 1 0 0 1 1 1 0 PAP2 superfamily DUF2721 PF11026.3 gi|305662858|ref|YP_003859146.1| - 0.71 9.5 4.5 0.8 9.3 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2892 PF11127.3 gi|305662858|ref|YP_003859146.1| - 0.84 9.5 3.0 1.1 9.1 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) Peptidase_M20 PF01546.23 gi|305662859|ref|YP_003859147.1| - 5.2e-35 120.6 0.0 6.4e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|305662859|ref|YP_003859147.1| - 4.5e-19 68.2 0.0 9.5e-19 67.2 0.0 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain DUF1469 PF07332.6 gi|305662860|ref|YP_003859148.1| - 0.00022 20.9 0.6 0.00029 20.5 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) DUF4500 PF14937.1 gi|305662860|ref|YP_003859148.1| - 0.0089 15.8 0.3 0.088 12.6 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4500) Reticulon PF02453.12 gi|305662860|ref|YP_003859148.1| - 0.009 15.6 0.0 0.011 15.3 0.0 1.0 1 0 0 1 1 1 1 Reticulon DUF2254 PF10011.4 gi|305662860|ref|YP_003859148.1| - 0.01 14.3 0.1 0.011 14.2 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF2614 PF11023.3 gi|305662860|ref|YP_003859148.1| - 0.014 15.1 1.3 0.015 15.0 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) ATG22 PF11700.3 gi|305662860|ref|YP_003859148.1| - 0.034 12.6 0.1 0.04 12.4 0.1 1.0 1 0 0 1 1 1 0 Vacuole effluxer Atg22 like DUF2231 PF09990.4 gi|305662860|ref|YP_003859148.1| - 0.064 13.6 3.5 0.082 13.2 2.4 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) DUF3007 PF11460.3 gi|305662860|ref|YP_003859148.1| - 0.2 11.7 0.9 0.28 11.2 0.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3007) Peptidase_U4 PF03419.8 gi|305662860|ref|YP_003859148.1| - 0.2 10.6 5.8 0.26 10.3 4.0 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF1628 PF07790.6 gi|305662860|ref|YP_003859148.1| - 0.99 10.2 0.1 0.99 10.2 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) T2SM PF04612.7 gi|305662860|ref|YP_003859148.1| - 1.1 9.0 3.3 2.3 8.0 0.0 2.0 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF131 PF01998.12 gi|305662861|ref|YP_003859149.1| - 1.1e-09 37.4 17.2 1.1e-09 37.4 11.9 2.1 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF599 PF04654.7 gi|305662861|ref|YP_003859149.1| - 0.13 11.4 4.4 0.16 11.0 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF599 ABC2_membrane_4 PF12730.2 gi|305662861|ref|YP_003859149.1| - 0.43 9.7 17.1 0.55 9.3 11.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF898 PF05987.8 gi|305662861|ref|YP_003859149.1| - 1.9 7.3 10.1 2.7 6.7 7.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF3481 PF11980.3 gi|305662861|ref|YP_003859149.1| - 2.1 8.2 5.9 4.8 7.0 1.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3481) Claudin_2 PF13903.1 gi|305662861|ref|YP_003859149.1| - 4.1 7.0 11.9 7.3 6.2 8.2 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction SdpI PF13630.1 gi|305662861|ref|YP_003859149.1| - 4.8 6.9 25.4 4e+03 -2.5 17.6 2.1 1 1 0 1 1 1 0 SdpI/YhfL protein family SUR7 PF06687.7 gi|305662861|ref|YP_003859149.1| - 7.3 6.0 11.9 9.7 5.6 8.3 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF131 PF01998.12 gi|305662862|ref|YP_003859150.1| - 4.4e-08 32.3 9.4 4.4e-08 32.3 6.5 2.4 1 1 1 2 2 1 1 Protein of unknown function DUF131 MFS_1 PF07690.11 gi|305662862|ref|YP_003859150.1| - 0.055 12.1 7.8 0.069 11.8 5.4 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily SUR7 PF06687.7 gi|305662862|ref|YP_003859150.1| - 0.076 12.5 7.5 0.11 12.0 5.2 1.2 1 0 0 1 1 1 0 SUR7/PalI family 7tm_1 PF00001.16 gi|305662862|ref|YP_003859150.1| - 0.14 11.2 1.7 0.21 10.6 1.2 1.3 1 1 0 1 1 1 0 7 transmembrane receptor (rhodopsin family) OSTbeta PF15048.1 gi|305662862|ref|YP_003859150.1| - 0.19 11.7 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 1 0 Organic solute transporter subunit beta protein HemY_N PF07219.8 gi|305662862|ref|YP_003859150.1| - 0.36 10.4 8.1 0.73 9.4 0.2 2.1 2 0 0 2 2 2 0 HemY protein N-terminus CD34_antigen PF06365.7 gi|305662862|ref|YP_003859150.1| - 0.38 10.3 0.1 0.38 10.3 0.0 1.8 2 0 0 2 2 2 0 CD34/Podocalyxin family Claudin_2 PF13903.1 gi|305662862|ref|YP_003859150.1| - 0.44 10.2 2.9 0.85 9.2 2.0 1.5 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction 7tm_7 PF08395.7 gi|305662862|ref|YP_003859150.1| - 1.5 7.8 8.8 4.6 6.1 1.5 2.0 2 0 0 2 2 2 0 7tm Chemosensory receptor Shisa PF13908.1 gi|305662862|ref|YP_003859150.1| - 1.7 8.7 8.0 8.4 6.5 0.1 2.1 2 0 0 2 2 2 0 Wnt and FGF inhibitory regulator Baculo_11_kDa PF06143.6 gi|305662862|ref|YP_003859150.1| - 1.9 7.9 15.6 2.6 7.4 0.4 2.3 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF3328 PF11807.3 gi|305662862|ref|YP_003859150.1| - 3 7.4 5.1 6.7 6.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3328) DUF898 PF05987.8 gi|305662862|ref|YP_003859150.1| - 3.9 6.2 6.8 7.8 5.2 4.7 1.5 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF898) YniB PF14002.1 gi|305662862|ref|YP_003859150.1| - 4.7 6.6 10.2 0.11 11.9 0.4 2.1 2 0 0 2 2 2 0 YniB-like protein Sigma_reg_N PF13800.1 gi|305662862|ref|YP_003859150.1| - 4.9 7.2 15.6 3.3 7.8 1.1 2.2 2 0 0 2 2 2 0 Sigma factor regulator N-terminal DUF4097 PF13349.1 gi|305662862|ref|YP_003859150.1| - 5 6.6 10.5 0.62 9.5 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) DUF1218 PF06749.7 gi|305662862|ref|YP_003859150.1| - 5.3 7.5 9.2 1.6 9.2 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1218) Fig1 PF12351.3 gi|305662862|ref|YP_003859150.1| - 5.4 6.8 8.8 8.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 DUF872 PF05915.7 gi|305662862|ref|YP_003859150.1| - 5.7 6.8 6.1 0.48 10.2 0.3 2.0 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) SBBP PF06739.6 gi|305662863|ref|YP_003859151.1| - 0.0054 16.4 0.4 0.0054 16.4 0.2 3.7 3 0 0 3 3 3 1 Beta-propeller repeat PQQ_3 PF13570.1 gi|305662863|ref|YP_003859151.1| - 0.13 12.5 11.3 4.9 7.5 0.0 4.7 5 0 0 5 5 5 0 PQQ-like domain Kelch_6 PF13964.1 gi|305662863|ref|YP_003859151.1| - 0.79 10.0 13.9 9.9 6.5 1.5 4.7 4 1 1 5 5 5 0 Kelch motif Aldolase_2 PF10120.4 gi|305662864|ref|YP_003859152.1| - 6e-35 120.1 0.0 9e-35 119.5 0.0 1.3 1 0 0 1 1 1 1 Putative aldolase HTH_23 PF13384.1 gi|305662864|ref|YP_003859152.1| - 0.00024 20.6 0.0 0.0011 18.5 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|305662864|ref|YP_003859152.1| - 0.0077 15.6 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_3 PF01381.17 gi|305662864|ref|YP_003859152.1| - 0.0081 15.9 0.0 0.024 14.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_28 PF13518.1 gi|305662864|ref|YP_003859152.1| - 0.021 14.8 0.0 0.061 13.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain RepB PF07506.6 gi|305662864|ref|YP_003859152.1| - 0.039 13.8 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_26 PF13443.1 gi|305662864|ref|YP_003859152.1| - 0.061 13.5 0.1 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_37 PF13744.1 gi|305662864|ref|YP_003859152.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MutS_IV PF05190.13 gi|305662864|ref|YP_003859152.1| - 0.12 12.5 0.2 0.33 11.1 0.0 1.8 2 0 0 2 2 2 0 MutS family domain IV HTH_29 PF13551.1 gi|305662864|ref|YP_003859152.1| - 0.15 12.2 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Radical_SAM PF04055.16 gi|305662866|ref|YP_003859154.1| - 5e-15 56.0 0.1 8.4e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305662866|ref|YP_003859154.1| - 8.7e-08 32.3 0.0 1.4e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305662866|ref|YP_003859154.1| - 2.5e-07 30.7 0.0 4.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|305662867|ref|YP_003859155.1| - 2.4e-08 34.3 0.7 3.9e-06 27.1 0.0 2.4 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.1 gi|305662867|ref|YP_003859155.1| - 0.017 15.2 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain Glyoxalase_4 PF13669.1 gi|305662867|ref|YP_003859155.1| - 0.19 11.7 0.0 0.4 10.6 0.0 1.6 1 1 0 1 1 1 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Rep_fac_C PF08542.6 gi|305662867|ref|YP_003859155.1| - 0.71 9.8 4.0 0.49 10.3 0.3 2.4 2 0 0 2 2 2 0 Replication factor C C-terminal domain zf-C2H2 PF00096.21 gi|305662870|ref|YP_003859158.1| - 4e-05 23.7 0.2 8e-05 22.7 0.1 1.5 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-Di19 PF05605.7 gi|305662870|ref|YP_003859158.1| - 0.00013 21.9 0.1 0.00021 21.3 0.0 1.3 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|305662870|ref|YP_003859158.1| - 0.00058 20.0 0.3 0.0013 18.8 0.2 1.6 1 0 0 1 1 1 1 C2H2-type zinc finger ARS2 PF04959.8 gi|305662870|ref|YP_003859158.1| - 0.009 16.2 0.1 0.012 15.8 0.1 1.3 1 1 0 1 1 1 1 Arsenite-resistance protein 2 zf-ribbon_3 PF13248.1 gi|305662870|ref|YP_003859158.1| - 0.039 13.1 0.1 0.056 12.6 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain DUF629 PF04780.7 gi|305662870|ref|YP_003859158.1| - 0.04 12.4 0.0 0.04 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-C2H2_jaz PF12171.3 gi|305662870|ref|YP_003859158.1| - 0.041 14.0 0.0 0.082 13.0 0.0 1.6 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.1 gi|305662870|ref|YP_003859158.1| - 0.052 13.2 0.4 0.094 12.4 0.3 1.5 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-H2C2_2 PF13465.1 gi|305662870|ref|YP_003859158.1| - 0.058 13.7 1.2 0.14 12.4 0.2 2.0 2 0 0 2 2 2 0 Zinc-finger double domain Rad50_zn_hook PF04423.9 gi|305662870|ref|YP_003859158.1| - 0.07 12.6 0.1 0.12 11.8 0.1 1.4 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-tcix PF14952.1 gi|305662870|ref|YP_003859158.1| - 0.098 12.0 0.2 0.16 11.3 0.2 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.5 gi|305662870|ref|YP_003859158.1| - 0.15 11.5 0.1 0.3 10.5 0.1 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain BDV_P24 PF06595.6 gi|305662871|ref|YP_003859159.1| - 0.059 13.1 0.7 0.084 12.6 0.2 1.5 2 0 0 2 2 2 0 Borna disease virus P24 protein Lon_C PF05362.8 gi|305662872|ref|YP_003859160.1| - 1.6e-08 34.1 0.0 3.2e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain CBS PF00571.23 gi|305662873|ref|YP_003859161.1| - 5.6e-48 160.4 9.1 1.4e-15 56.7 0.0 4.5 5 0 0 5 5 5 4 CBS domain Ribosomal_S30AE PF02482.14 gi|305662873|ref|YP_003859161.1| - 9.5e-06 25.9 0.1 1.9e-05 25.0 0.1 1.5 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein IF3_N PF05198.11 gi|305662873|ref|YP_003859161.1| - 0.043 13.7 0.1 1.3 9.0 0.0 2.8 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Cache_3 PF14827.1 gi|305662873|ref|YP_003859161.1| - 0.059 13.2 2.5 48 3.8 0.0 3.9 4 0 0 4 4 4 0 Sensory domain of two-component sensor kinase DUF2919 PF11143.3 gi|305662874|ref|YP_003859162.1| - 0.23 11.2 3.9 0.41 10.4 2.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2919) MMgT PF10270.4 gi|305662874|ref|YP_003859162.1| - 3.5 8.1 5.9 0.61 10.5 0.5 2.4 3 0 0 3 3 3 0 Membrane magnesium transporter TrkA_N PF02254.13 gi|305662875|ref|YP_003859163.1| - 3.9e-17 62.3 2.1 3.9e-17 62.3 1.5 2.4 2 1 1 3 3 3 1 TrkA-N domain TrkA_C PF02080.16 gi|305662875|ref|YP_003859163.1| - 2.5e-07 30.1 0.3 1.9e-06 27.3 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|305662875|ref|YP_003859163.1| - 6.7e-05 23.2 0.3 0.00086 19.6 0.0 2.8 1 1 2 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|305662875|ref|YP_003859163.1| - 0.0044 17.2 4.8 0.019 15.1 0.1 2.5 2 1 1 3 3 3 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|305662875|ref|YP_003859163.1| - 0.052 13.3 0.2 0.93 9.3 0.1 2.3 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF3107 PF11305.3 gi|305662875|ref|YP_003859163.1| - 0.067 13.0 1.3 2.1 8.3 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3107) PilI PF10623.4 gi|305662875|ref|YP_003859163.1| - 0.19 11.6 1.0 0.48 10.3 0.2 2.1 2 0 0 2 2 2 0 Plasmid conjugative transfer protein PilI TrkH PF02386.11 gi|305662876|ref|YP_003859164.1| - 4.4e-44 150.4 48.1 1.9e-43 148.4 21.1 3.0 3 0 0 3 3 3 2 Cation transport protein FLILHELTA PF10306.4 gi|305662876|ref|YP_003859164.1| - 0.21 11.6 1.5 0.48 10.4 0.1 2.3 2 0 0 2 2 2 0 Hypothetical protein FLILHELTA DUF35 PF01796.12 gi|305662877|ref|YP_003859165.1| - 1.5e-12 47.5 0.2 2e-12 47.1 0.1 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|305662877|ref|YP_003859165.1| - 3.6e-10 39.4 3.1 5.3e-10 38.9 2.1 1.2 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|305662877|ref|YP_003859165.1| - 0.051 13.3 0.4 0.051 13.3 0.3 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|305662877|ref|YP_003859165.1| - 0.056 13.2 1.5 0.092 12.5 1.0 1.2 1 0 0 1 1 1 0 Double zinc ribbon TFIIS_C PF01096.13 gi|305662877|ref|YP_003859165.1| - 0.11 12.2 1.0 3.8 7.2 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|305662877|ref|YP_003859165.1| - 0.12 11.6 6.3 0.24 10.6 4.3 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|305662877|ref|YP_003859165.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.1 gi|305662877|ref|YP_003859165.1| - 0.37 10.3 6.7 4.8 6.8 5.0 2.2 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|305662877|ref|YP_003859165.1| - 0.61 10.0 4.8 17 5.4 3.4 2.2 1 1 0 1 1 1 0 Zinc ribbon domain Thiolase_C PF02803.13 gi|305662878|ref|YP_003859166.1| - 1.9e-13 49.8 0.2 2.9e-12 46.0 0.0 2.3 2 0 0 2 2 2 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|305662878|ref|YP_003859166.1| - 6.8e-08 32.0 5.0 3.4e-06 26.6 0.4 3.0 3 0 0 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|305662878|ref|YP_003859166.1| - 2.7e-07 29.8 2.7 1.9e-06 27.0 0.2 2.1 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|305662878|ref|YP_003859166.1| - 0.00079 19.2 0.2 0.072 12.9 0.0 2.5 2 0 0 2 2 2 1 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.21 gi|305662878|ref|YP_003859166.1| - 0.00091 18.7 1.3 0.00091 18.7 0.9 2.0 3 0 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Na_H_Exchanger PF00999.16 gi|305662879|ref|YP_003859167.1| - 1.3e-26 93.0 50.0 1.6e-26 92.7 34.6 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Radical_SAM PF04055.16 gi|305662880|ref|YP_003859168.1| - 9.1e-07 29.1 1.2 1.1e-06 28.8 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|305662880|ref|YP_003859168.1| - 1.5e-05 25.0 0.0 3.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|305662880|ref|YP_003859168.1| - 2.5e-05 24.4 0.1 6.3e-05 23.1 0.1 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain RPEL PF02755.10 gi|305662880|ref|YP_003859168.1| - 0.45 9.9 2.0 1.1 8.6 1.4 1.7 1 0 0 1 1 1 0 RPEL repeat tRNA_edit PF04073.10 gi|305662881|ref|YP_003859169.1| - 1.8e-26 92.3 0.0 2.2e-26 92.1 0.0 1.1 1 0 0 1 1 1 1 Aminoacyl-tRNA editing domain NfeD PF01957.13 gi|305662882|ref|YP_003859170.1| - 4.7e-19 68.9 18.1 2.2e-18 66.7 2.3 2.5 1 1 1 2 2 2 2 NfeD-like C-terminal, partner-binding Claudin_2 PF13903.1 gi|305662882|ref|YP_003859170.1| - 7.5 6.2 9.7 62 3.2 6.7 2.2 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Band_7 PF01145.20 gi|305662883|ref|YP_003859171.1| - 1.4e-34 119.5 0.6 2.1e-34 118.9 0.4 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|305662883|ref|YP_003859171.1| - 0.00035 20.1 0.1 0.00061 19.3 0.1 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family Glyco_hydro_12 PF01670.11 gi|305662884|ref|YP_003859172.1| - 1.4e-18 67.1 0.7 1.4e-18 67.1 0.5 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 12 FG-GAP PF01839.18 gi|305662884|ref|YP_003859172.1| - 0.033 13.8 0.3 1.2 8.9 0.0 2.5 2 0 0 2 2 2 0 FG-GAP repeat RHH_1 PF01402.16 gi|305662885|ref|YP_003859173.1| - 3.3e-08 33.0 0.8 3.3e-08 33.0 0.5 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|305662885|ref|YP_003859173.1| - 0.021 14.9 0.1 0.023 14.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) RST PF12174.3 gi|305662885|ref|YP_003859173.1| - 0.39 10.5 2.2 2.2 8.1 0.1 2.1 1 1 1 2 2 2 0 RCD1-SRO-TAF4 (RST) plant domain HTH_23 PF13384.1 gi|305662886|ref|YP_003859174.1| - 0.0068 16.0 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain DUF3505 PF12013.3 gi|305662886|ref|YP_003859174.1| - 0.0078 16.4 0.2 0.012 15.8 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3505) Phage_antitermQ PF06530.7 gi|305662886|ref|YP_003859174.1| - 0.023 14.2 0.1 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q FaeA PF04703.7 gi|305662886|ref|YP_003859174.1| - 0.057 13.5 0.1 0.11 12.6 0.1 1.6 1 1 0 1 1 1 0 FaeA-like protein HTH_28 PF13518.1 gi|305662886|ref|YP_003859174.1| - 0.13 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Radical_SAM PF04055.16 gi|305662887|ref|YP_003859175.1| - 3e-09 37.2 0.8 7.6e-09 35.9 0.4 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|305662887|ref|YP_003859175.1| - 0.00022 21.0 0.0 0.00053 19.8 0.0 1.7 1 0 0 1 1 1 1 B12 binding domain Acetyltransf_1 PF00583.19 gi|305662890|ref|YP_003859178.1| - 1.8e-21 75.9 0.1 2.4e-21 75.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|305662890|ref|YP_003859178.1| - 1.8e-12 47.2 0.1 2.9e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|305662890|ref|YP_003859178.1| - 5.6e-11 42.5 0.0 7.1e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|305662890|ref|YP_003859178.1| - 5.7e-11 42.0 0.1 7.7e-11 41.6 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|305662890|ref|YP_003859178.1| - 1.4e-10 41.2 0.0 2e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|305662890|ref|YP_003859178.1| - 1.9e-10 40.9 0.3 2.5e-10 40.4 0.2 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|305662890|ref|YP_003859178.1| - 5.6e-10 39.5 0.2 4e-09 36.7 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|305662890|ref|YP_003859178.1| - 7.7e-06 25.7 0.1 3.3e-05 23.7 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|305662890|ref|YP_003859178.1| - 1.4e-05 24.0 0.1 1.7e-05 23.7 0.1 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Gly_acyl_tr_C PF08444.5 gi|305662890|ref|YP_003859178.1| - 0.029 14.3 0.1 0.049 13.6 0.0 1.3 1 0 0 1 1 1 0 Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region Acetyltransf_13 PF13880.1 gi|305662890|ref|YP_003859178.1| - 0.031 14.0 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_CG PF14542.1 gi|305662890|ref|YP_003859178.1| - 0.061 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Pribosyltran PF00156.22 gi|305662893|ref|YP_003859181.1| - 1.4e-15 57.1 0.3 3e-15 56.0 0.1 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain HTH_24 PF13412.1 gi|305662893|ref|YP_003859181.1| - 0.015 14.6 0.3 2 7.8 0.0 2.9 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_17 PF12728.2 gi|305662893|ref|YP_003859181.1| - 0.041 14.1 0.0 0.14 12.3 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain COP23 PF14218.1 gi|305662894|ref|YP_003859182.1| - 0.061 12.8 0.0 0.082 12.4 0.0 1.1 1 0 0 1 1 1 0 Circadian oscillating protein COP23 ACP_syn_III_C PF08541.5 gi|305662896|ref|YP_003859184.1| - 1.4e-13 50.6 0.0 6.2e-13 48.5 0.0 2.0 2 1 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HMG_CoA_synt_C PF08540.5 gi|305662896|ref|YP_003859184.1| - 9.8e-06 25.2 0.1 0.00046 19.7 0.0 2.1 1 1 1 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.5 gi|305662896|ref|YP_003859184.1| - 1.8e-05 24.3 0.9 3e-05 23.5 0.2 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.18 gi|305662896|ref|YP_003859184.1| - 0.0018 17.2 0.0 0.0034 16.4 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Chal_sti_synt_N PF00195.14 gi|305662896|ref|YP_003859184.1| - 0.0027 16.9 0.0 0.91 8.7 0.0 2.4 2 1 0 2 2 2 2 Chalcone and stilbene synthases, N-terminal domain FmdE PF02663.9 gi|305662896|ref|YP_003859184.1| - 0.1 12.4 0.0 7.1 6.5 0.0 2.7 3 0 0 3 3 3 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon Orthopox_A43R PF06517.6 gi|305662897|ref|YP_003859185.1| - 0.033 13.7 1.2 0.074 12.6 0.3 1.8 1 1 1 2 2 2 0 Orthopoxvirus A43R protein EMG1 PF03587.9 gi|305662898|ref|YP_003859186.1| - 1.3e-50 171.5 0.0 1.4e-50 171.3 0.0 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase ROK PF00480.15 gi|305662900|ref|YP_003859188.1| - 1.5e-38 132.4 0.7 2e-38 131.9 0.5 1.2 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.16 gi|305662900|ref|YP_003859188.1| - 0.027 13.7 0.0 0.053 12.8 0.0 1.5 1 0 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain PhosphMutase PF10143.4 gi|305662901|ref|YP_003859189.1| - 7.8e-44 149.3 0.0 1.1e-43 148.8 0.0 1.2 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.13 gi|305662901|ref|YP_003859189.1| - 3.4e-36 124.9 0.0 4.2e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|305662901|ref|YP_003859189.1| - 0.0039 16.5 0.1 0.0078 15.5 0.0 1.4 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Alk_phosphatase PF00245.15 gi|305662901|ref|YP_003859189.1| - 0.052 12.2 0.0 0.074 11.7 0.0 1.1 1 0 0 1 1 1 0 Alkaline phosphatase PhoU PF01895.14 gi|305662902|ref|YP_003859190.1| - 4e-11 43.2 4.2 3.4e-10 40.2 0.3 2.8 3 1 0 3 3 3 1 PhoU domain Antitoxin-MazE PF04014.13 gi|305662902|ref|YP_003859190.1| - 2.3e-06 27.1 0.1 5.8e-06 25.9 0.1 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF1987 PF09345.5 gi|305662902|ref|YP_003859190.1| - 0.043 13.6 0.1 5 6.9 0.0 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1987) SymE_toxin PF08845.5 gi|305662902|ref|YP_003859190.1| - 0.044 13.6 0.0 0.087 12.6 0.0 1.5 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DUF402 PF04167.8 gi|305662903|ref|YP_003859191.1| - 2.8e-15 55.8 0.1 5.9e-15 54.8 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.4 gi|305662903|ref|YP_003859191.1| - 5.4e-06 25.8 0.2 8.8e-06 25.1 0.2 1.3 1 0 0 1 1 1 1 Ribonuclease E/G family CTP_transf_3 PF02348.14 gi|305662903|ref|YP_003859191.1| - 0.053 13.1 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytidylyltransferase UPF0147 PF03685.8 gi|305662904|ref|YP_003859192.1| - 7.9e-34 115.3 0.1 9.4e-34 115.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.7 gi|305662904|ref|YP_003859192.1| - 0.023 14.7 0.1 0.63 10.1 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) Lactamase_B_3 PF13483.1 gi|305662905|ref|YP_003859193.1| - 1.3e-45 155.0 0.4 1.8e-45 154.5 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|305662905|ref|YP_003859193.1| - 2.9e-10 39.9 3.7 1.5e-07 31.1 2.6 2.1 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305662905|ref|YP_003859193.1| - 0.08 12.5 4.4 0.084 12.5 1.2 2.0 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily CxxCxxCC PF03692.10 gi|305662906|ref|YP_003859194.1| - 2.2e-09 37.6 0.2 3.9e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Methyltransf_31 PF13847.1 gi|305662907|ref|YP_003859195.1| - 3.4e-10 39.7 0.0 4.3e-10 39.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305662907|ref|YP_003859195.1| - 4.6e-09 36.8 0.0 6.7e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.8 gi|305662907|ref|YP_003859195.1| - 3e-08 33.2 0.0 8.9e-07 28.4 0.0 2.0 1 1 0 1 1 1 1 Histone methylation protein DOT1 UPF0020 PF01170.13 gi|305662907|ref|YP_003859195.1| - 6.8e-08 32.2 0.0 9.7e-08 31.7 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.1 gi|305662907|ref|YP_003859195.1| - 7.9e-08 32.5 0.0 1e-07 32.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305662907|ref|YP_003859195.1| - 1.2e-06 28.8 0.0 1.7e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305662907|ref|YP_003859195.1| - 1.9e-06 27.8 0.0 2.3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|305662907|ref|YP_003859195.1| - 7.5e-06 25.4 0.0 1e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_4 PF02390.12 gi|305662907|ref|YP_003859195.1| - 2.4e-05 23.4 0.0 3.2e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Putative methyltransferase PrmA PF06325.8 gi|305662907|ref|YP_003859195.1| - 2.6e-05 23.5 0.0 3.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Ubie_methyltran PF01209.13 gi|305662907|ref|YP_003859195.1| - 7.8e-05 21.8 0.0 0.0001 21.4 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|305662907|ref|YP_003859195.1| - 0.00012 21.8 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|305662907|ref|YP_003859195.1| - 0.00018 20.6 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.7 gi|305662907|ref|YP_003859195.1| - 0.00036 20.9 0.0 0.00051 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305662907|ref|YP_003859195.1| - 0.0028 17.2 0.0 0.003 17.1 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase CMAS PF02353.15 gi|305662907|ref|YP_003859195.1| - 0.01 14.9 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Met_10 PF02475.11 gi|305662907|ref|YP_003859195.1| - 0.022 14.3 0.1 0.027 14.0 0.1 1.1 1 0 0 1 1 1 0 Met-10+ like-protein Methyltransf_32 PF13679.1 gi|305662907|ref|YP_003859195.1| - 0.068 12.8 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.13 gi|305662907|ref|YP_003859195.1| - 0.092 11.9 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Pox_MCEL PF03291.11 gi|305662907|ref|YP_003859195.1| - 0.11 11.3 0.0 0.13 11.1 0.0 1.1 1 0 0 1 1 1 0 mRNA capping enzyme HEPN PF05168.9 gi|305662908|ref|YP_003859196.1| - 0.0025 17.7 0.6 0.012 15.4 0.0 2.0 1 1 1 2 2 2 1 HEPN domain Fzo_mitofusin PF04799.8 gi|305662908|ref|YP_003859196.1| - 0.035 13.4 1.9 0.05 12.9 0.2 1.9 1 1 1 2 2 2 0 fzo-like conserved region SpoIIID PF12116.3 gi|305662908|ref|YP_003859196.1| - 0.036 13.9 0.9 0.13 12.1 0.1 2.2 2 1 0 2 2 2 0 Stage III sporulation protein D MCM_N PF14551.1 gi|305662908|ref|YP_003859196.1| - 0.067 13.6 1.1 0.12 12.8 0.8 1.6 1 1 0 1 1 1 0 MCM N-terminal domain DUF1664 PF07889.7 gi|305662908|ref|YP_003859196.1| - 0.38 10.5 4.0 0.53 10.0 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Radical_SAM PF04055.16 gi|305662909|ref|YP_003859197.1| - 1.9e-19 70.4 0.0 2.5e-18 66.7 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|305662909|ref|YP_003859197.1| - 0.0069 16.2 0.1 0.76 9.6 0.0 2.5 2 0 0 2 2 2 2 B12 binding domain DUF4059 PF13268.1 gi|305662909|ref|YP_003859197.1| - 0.048 13.8 0.4 0.12 12.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4059) DUF2192 PF09958.4 gi|305662910|ref|YP_003859198.1| - 1.3e-63 214.3 0.5 1.7e-63 213.9 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) PRD_Mga PF08270.6 gi|305662910|ref|YP_003859198.1| - 0.0022 17.2 1.0 0.0048 16.1 0.7 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) PRD domain UBA_3 PF09288.5 gi|305662910|ref|YP_003859198.1| - 0.0079 15.7 1.1 3 7.5 0.0 2.9 3 0 0 3 3 3 2 Fungal ubiquitin-associated domain DUF3954 PF13128.1 gi|305662911|ref|YP_003859199.1| - 0.0054 16.1 0.6 0.038 13.4 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3954) DEAD_assoc PF08494.6 gi|305662912|ref|YP_003859200.1| - 2.1e-55 187.3 0.1 4.1e-55 186.4 0.1 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|305662912|ref|YP_003859200.1| - 7.6e-29 100.3 0.0 9.7e-28 96.7 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|305662912|ref|YP_003859200.1| - 3.6e-13 49.1 0.0 1.2e-12 47.5 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|305662912|ref|YP_003859200.1| - 2.7e-09 37.1 0.0 1.5e-08 34.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|305662912|ref|YP_003859200.1| - 0.0056 16.8 1.1 10 6.2 0.0 3.6 3 0 0 3 3 3 1 AAA domain Ribosomal_L6 PF00347.18 gi|305662912|ref|YP_003859200.1| - 0.057 13.9 0.0 0.25 11.8 0.0 2.1 1 0 0 1 1 1 0 Ribosomal protein L6 SNF2_N PF00176.18 gi|305662912|ref|YP_003859200.1| - 0.082 11.6 0.0 0.19 10.5 0.0 1.6 1 0 0 1 1 1 0 SNF2 family N-terminal domain SKG6 PF08693.5 gi|305662913|ref|YP_003859201.1| - 0.088 12.1 4.4 3.5 7.0 0.4 3.0 2 0 0 2 2 2 0 Transmembrane alpha-helix domain Fer4_7 PF12838.2 gi|305662914|ref|YP_003859202.1| - 9.1e-07 29.1 10.1 1.3e-06 28.7 7.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305662914|ref|YP_003859202.1| - 3.2e-06 26.7 14.4 0.00024 20.8 2.1 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|305662914|ref|YP_003859202.1| - 5.1e-06 25.8 16.8 0.0066 16.0 2.4 3.0 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|305662914|ref|YP_003859202.1| - 8.5e-05 22.2 25.1 0.002 17.8 10.0 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|305662914|ref|YP_003859202.1| - 9.1e-05 22.2 7.8 0.0001 22.1 5.4 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|305662914|ref|YP_003859202.1| - 0.00011 21.8 12.9 0.0023 17.7 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|305662914|ref|YP_003859202.1| - 0.00018 21.6 13.4 0.00028 21.0 9.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|305662914|ref|YP_003859202.1| - 0.00044 20.9 12.3 0.016 15.9 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|305662914|ref|YP_003859202.1| - 0.0005 19.8 10.5 0.00059 19.6 7.3 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|305662914|ref|YP_003859202.1| - 0.03 14.8 9.9 0.31 11.7 0.9 2.6 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|305662914|ref|YP_003859202.1| - 0.2 11.3 9.8 0.44 10.2 0.6 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.1 gi|305662914|ref|YP_003859202.1| - 1.5 9.2 12.0 1.1e+03 -0.0 8.5 2.2 1 1 0 1 1 1 0 4Fe-4S dicluster domain SIS PF01380.17 gi|305662915|ref|YP_003859203.1| - 4.5e-47 158.9 0.9 1.4e-29 102.3 0.3 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|305662915|ref|YP_003859203.1| - 1.5e-23 83.1 0.0 2.6e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|305662915|ref|YP_003859203.1| - 1.3e-18 66.8 0.6 1.8e-15 56.5 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|305662915|ref|YP_003859203.1| - 5.4e-18 64.9 0.0 9.3e-18 64.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.1 gi|305662915|ref|YP_003859203.1| - 3.6e-06 26.7 1.2 0.00017 21.2 0.1 3.2 2 1 1 3 3 3 1 SIS domain GATase_4 PF13230.1 gi|305662915|ref|YP_003859203.1| - 0.01 14.5 0.1 0.017 13.8 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II NTP_transferase PF00483.18 gi|305662916|ref|YP_003859204.1| - 1.7e-16 60.3 0.0 2.1e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|305662916|ref|YP_003859204.1| - 4.5e-16 57.5 7.6 8.3e-09 34.5 0.3 4.8 3 2 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|305662916|ref|YP_003859204.1| - 1.2e-12 48.1 0.0 1.5e-12 47.8 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|305662916|ref|YP_003859204.1| - 8.7e-06 25.1 1.6 0.032 13.8 0.0 3.8 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|305662916|ref|YP_003859204.1| - 0.002 17.7 0.1 0.0029 17.1 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDP-OH_P_transf PF01066.16 gi|305662917|ref|YP_003859205.1| - 8.7e-16 58.0 6.7 8.7e-16 58.0 4.6 3.6 3 1 0 4 4 4 1 CDP-alcohol phosphatidyltransferase NTP_transf_3 PF12804.2 gi|305662917|ref|YP_003859205.1| - 4.4e-13 49.6 0.0 7.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.18 gi|305662917|ref|YP_003859205.1| - 1.6e-06 27.6 0.0 3e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyl transferase ABC_tran PF00005.22 gi|305662918|ref|YP_003859206.1| - 5.8e-22 78.4 0.0 8.5e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662918|ref|YP_003859206.1| - 1.3e-09 38.4 0.1 3.2e-07 30.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain MobB PF03205.9 gi|305662918|ref|YP_003859206.1| - 0.13 12.0 0.2 0.59 9.8 0.1 2.0 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|305662918|ref|YP_003859206.1| - 0.14 11.5 0.1 2.7 7.3 0.0 2.4 2 1 0 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|305662919|ref|YP_003859207.1| - 4e-18 65.2 17.6 2.2e-17 62.8 12.2 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305662919|ref|YP_003859207.1| - 1.7e-07 30.6 49.0 9.1e-07 28.2 34.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|305662919|ref|YP_003859207.1| - 4.1 6.6 44.5 0.021 14.1 19.6 3.4 3 2 1 4 4 4 0 ABC-2 family transporter protein DUF1270 PF06900.6 gi|305662920|ref|YP_003859208.1| - 0.12 12.5 4.2 0.19 11.8 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1270) EOS1 PF12326.3 gi|305662920|ref|YP_003859208.1| - 0.43 10.2 4.7 0.46 10.1 3.2 1.1 1 0 0 1 1 1 0 N-glycosylation protein 2TM PF13239.1 gi|305662920|ref|YP_003859208.1| - 1.5 8.9 5.3 1.7 8.7 3.7 1.2 1 0 0 1 1 1 0 2TM domain HD PF01966.17 gi|305662921|ref|YP_003859209.1| - 2.7e-15 56.4 0.8 5.1e-15 55.5 0.6 1.5 1 0 0 1 1 1 1 HD domain DUF706 PF05153.10 gi|305662921|ref|YP_003859209.1| - 0.045 13.0 0.1 0.059 12.6 0.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF706) HDOD PF08668.7 gi|305662921|ref|YP_003859209.1| - 0.046 12.9 0.1 0.22 10.7 0.1 1.8 1 1 1 2 2 2 0 HDOD domain DUF996 PF06195.8 gi|305662922|ref|YP_003859210.1| - 7.8e-25 87.4 26.8 7.8e-25 87.4 18.6 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF996) Synaptobrevin PF00957.16 gi|305662922|ref|YP_003859210.1| - 0.0063 16.0 1.7 0.0063 16.0 1.2 4.5 3 2 1 4 4 4 1 Synaptobrevin MpPF26 PF07666.6 gi|305662922|ref|YP_003859210.1| - 0.018 14.9 13.3 0.018 14.9 9.2 2.4 2 1 0 2 2 2 0 M penetrans paralogue family 26 G0-G1_switch_2 PF15103.1 gi|305662922|ref|YP_003859210.1| - 0.27 11.4 0.8 18 5.6 0.2 2.3 2 0 0 2 2 2 0 G0/G1 switch protein 2 DUF373 PF04123.8 gi|305662922|ref|YP_003859210.1| - 0.34 9.8 23.4 0.4 9.6 16.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Herpes_UL73 PF03554.8 gi|305662922|ref|YP_003859210.1| - 2.7 7.8 7.1 1.2 9.0 2.1 2.3 1 1 1 2 2 2 0 UL73 viral envelope glycoprotein DUF973 PF06157.6 gi|305662922|ref|YP_003859210.1| - 4.6 6.1 49.2 10 5.0 15.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF973) DUF433 PF04255.9 gi|305662923|ref|YP_003859211.1| - 6.8e-25 86.2 0.1 9e-25 85.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF433) GerE PF00196.14 gi|305662923|ref|YP_003859211.1| - 0.0013 18.0 0.0 0.0017 17.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r3 PF04539.11 gi|305662923|ref|YP_003859211.1| - 0.0013 18.5 0.1 0.002 17.9 0.1 1.3 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_7 PF02796.10 gi|305662923|ref|YP_003859211.1| - 0.0065 16.3 0.0 0.0099 15.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|305662923|ref|YP_003859211.1| - 0.02 14.5 0.0 0.072 12.7 0.0 1.8 1 1 1 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|305662923|ref|YP_003859211.1| - 0.032 13.5 0.0 0.045 13.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 SinI PF08671.5 gi|305662923|ref|YP_003859211.1| - 0.095 12.1 1.1 1.2 8.6 0.1 2.6 3 0 0 3 3 3 0 Anti-repressor SinI Sigma70_r4_2 PF08281.7 gi|305662923|ref|YP_003859211.1| - 0.11 11.9 0.1 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Mut7-C PF01927.11 gi|305662924|ref|YP_003859212.1| - 0.11 12.5 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Mut7-C RNAse domain ABC_tran PF00005.22 gi|305662925|ref|YP_003859213.1| - 1.4e-22 80.4 0.0 2e-22 79.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662925|ref|YP_003859213.1| - 4.3e-10 40.0 4.7 5e-08 33.2 2.1 2.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305662925|ref|YP_003859213.1| - 6e-06 25.5 0.2 0.0063 15.6 0.0 2.3 1 1 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|305662925|ref|YP_003859213.1| - 0.00075 18.7 0.0 0.0012 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|305662925|ref|YP_003859213.1| - 0.00087 19.3 0.0 0.0013 18.7 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|305662925|ref|YP_003859213.1| - 0.00087 18.7 0.1 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MutS_V PF00488.16 gi|305662925|ref|YP_003859213.1| - 0.0013 18.1 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_17 PF13207.1 gi|305662925|ref|YP_003859213.1| - 0.0014 19.3 1.2 0.0029 18.3 0.8 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|305662925|ref|YP_003859213.1| - 0.0029 17.9 0.3 0.0077 16.5 0.1 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|305662925|ref|YP_003859213.1| - 0.003 17.6 0.6 0.034 14.2 0.3 2.7 1 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|305662925|ref|YP_003859213.1| - 0.0076 14.9 0.0 0.014 14.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|305662925|ref|YP_003859213.1| - 0.0088 16.0 0.4 0.061 13.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|305662925|ref|YP_003859213.1| - 0.011 15.1 6.1 0.16 11.3 0.7 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|305662925|ref|YP_003859213.1| - 0.017 15.4 2.6 0.055 13.7 1.8 2.1 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|305662925|ref|YP_003859213.1| - 0.024 14.3 1.3 0.12 12.1 0.1 2.2 2 0 0 2 2 2 0 NTPase T2SE PF00437.15 gi|305662925|ref|YP_003859213.1| - 0.025 13.5 2.9 0.18 10.6 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|305662925|ref|YP_003859213.1| - 0.066 12.9 0.1 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase MobB PF03205.9 gi|305662925|ref|YP_003859213.1| - 0.08 12.6 0.1 0.16 11.7 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B UPF0079 PF02367.12 gi|305662925|ref|YP_003859213.1| - 0.084 12.5 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|305662925|ref|YP_003859213.1| - 0.085 12.6 0.4 0.2 11.4 0.1 1.7 2 0 0 2 2 1 0 Part of AAA domain AAA PF00004.24 gi|305662925|ref|YP_003859213.1| - 0.1 12.7 0.1 0.78 9.9 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|305662925|ref|YP_003859213.1| - 0.11 11.7 0.1 0.35 10.0 0.1 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|305662925|ref|YP_003859213.1| - 0.17 11.2 0.1 0.31 10.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305662925|ref|YP_003859213.1| - 0.2 11.5 1.3 1.7 8.5 0.1 2.4 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|305662925|ref|YP_003859213.1| - 0.48 10.2 1.7 0.68 9.7 0.4 1.9 2 1 0 2 2 2 0 AAA domain CbiQ PF02361.11 gi|305662926|ref|YP_003859214.1| - 1.7e-19 70.3 18.3 2.7e-19 69.6 12.7 1.3 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|305662927|ref|YP_003859215.1| - 1.9e-25 89.7 0.0 2.7e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662927|ref|YP_003859215.1| - 2.5e-16 60.5 8.0 3.3e-08 33.8 1.2 2.9 2 1 1 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|305662927|ref|YP_003859215.1| - 0.00014 22.7 0.6 0.00038 21.2 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305662927|ref|YP_003859215.1| - 0.00016 20.8 0.3 0.074 12.0 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|305662927|ref|YP_003859215.1| - 0.00023 21.5 0.3 0.00042 20.6 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305662927|ref|YP_003859215.1| - 0.0023 17.3 0.1 0.0044 16.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain MobB PF03205.9 gi|305662927|ref|YP_003859215.1| - 0.0092 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|305662927|ref|YP_003859215.1| - 0.0094 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305662927|ref|YP_003859215.1| - 0.011 15.9 0.1 0.027 14.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|305662927|ref|YP_003859215.1| - 0.013 15.7 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|305662927|ref|YP_003859215.1| - 0.025 14.4 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|305662927|ref|YP_003859215.1| - 0.029 13.5 0.3 0.21 10.8 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|305662927|ref|YP_003859215.1| - 0.05 13.5 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305662927|ref|YP_003859215.1| - 0.056 12.8 0.2 0.073 12.4 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|305662927|ref|YP_003859215.1| - 0.056 12.8 0.0 0.095 12.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|305662927|ref|YP_003859215.1| - 0.065 12.8 0.0 0.099 12.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305662927|ref|YP_003859215.1| - 0.065 13.1 0.1 0.4 10.5 0.0 2.3 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|305662927|ref|YP_003859215.1| - 0.066 12.3 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|305662927|ref|YP_003859215.1| - 0.083 12.5 0.2 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|305662927|ref|YP_003859215.1| - 0.084 11.7 0.0 0.15 10.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|305662927|ref|YP_003859215.1| - 0.098 11.7 0.0 0.17 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|305662927|ref|YP_003859215.1| - 0.1 12.8 0.0 0.22 11.7 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.1 gi|305662927|ref|YP_003859215.1| - 0.11 10.9 2.1 0.51 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|305662927|ref|YP_003859215.1| - 0.12 12.1 0.1 0.29 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain PduV-EutP PF10662.4 gi|305662927|ref|YP_003859215.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation GHMP_kinases_N PF00288.21 gi|305662928|ref|YP_003859216.1| - 1.2e-06 28.4 0.1 4.8e-06 26.5 0.1 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain ECF-ribofla_trS PF07155.7 gi|305662929|ref|YP_003859217.1| - 0.068 12.8 26.7 0.014 15.1 16.0 1.7 1 1 1 2 2 2 0 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|305662929|ref|YP_003859217.1| - 0.62 9.9 34.6 4.1 7.2 24.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) Orai-1 PF07856.7 gi|305662929|ref|YP_003859217.1| - 6.9 6.1 9.0 0.42 10.1 1.5 2.2 1 1 1 2 2 2 0 Mediator of CRAC channel activity DMRL_synthase PF00885.14 gi|305662930|ref|YP_003859218.1| - 7.3e-27 93.8 0.0 8.2e-27 93.6 0.0 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase ETF PF01012.16 gi|305662930|ref|YP_003859218.1| - 0.017 14.8 0.4 0.06 13.0 0.0 1.8 1 1 0 2 2 2 0 Electron transfer flavoprotein domain PIN PF01850.16 gi|305662931|ref|YP_003859219.1| - 3.6e-16 59.5 0.1 4.8e-16 59.1 0.1 1.2 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|305662932|ref|YP_003859220.1| - 1e-22 79.9 2.8 1.2e-22 79.6 2.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 HTH_45 PF14947.1 gi|305662933|ref|YP_003859221.1| - 1.5e-17 63.1 2.8 1.5e-17 63.1 1.9 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix Rio2_N PF09202.6 gi|305662933|ref|YP_003859221.1| - 0.027 14.5 0.3 0.081 12.9 0.2 1.8 1 0 0 1 1 1 0 Rio2, N-terminal Peptidase_S24 PF00717.18 gi|305662935|ref|YP_003859223.1| - 6.3e-07 28.9 1.9 7.2e-07 28.7 0.3 1.9 2 0 0 2 2 2 1 Peptidase S24-like FG-GAP PF01839.18 gi|305662936|ref|YP_003859224.1| - 0.00061 19.4 0.0 0.0019 17.8 0.0 1.8 1 0 0 1 1 1 1 FG-GAP repeat VCBS PF13517.1 gi|305662936|ref|YP_003859224.1| - 0.013 15.8 0.1 0.059 13.7 0.0 2.2 2 0 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella DEC-1_N PF04625.8 gi|305662936|ref|YP_003859224.1| - 0.61 8.6 2.9 0.84 8.2 2.0 1.1 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region PLRV_ORF5 PF01690.12 gi|305662936|ref|YP_003859224.1| - 1.7 7.7 20.2 2.6 7.0 14.0 1.2 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein FG-GAP PF01839.18 gi|305662937|ref|YP_003859225.1| - 0.056 13.1 6.8 0.18 11.5 0.0 2.5 2 0 0 2 2 2 0 FG-GAP repeat VCBS PF13517.1 gi|305662937|ref|YP_003859225.1| - 0.3 11.4 7.8 7.3 7.0 0.1 2.6 2 1 0 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RTX_C PF08339.5 gi|305662938|ref|YP_003859226.1| - 0.062 13.0 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 RTX C-terminal domain CbiQ PF02361.11 gi|305662939|ref|YP_003859227.1| - 0.12 11.8 1.3 0.15 11.5 0.9 1.0 1 0 0 1 1 1 0 Cobalt transport protein Glyco_hydro_42 PF02449.10 gi|305662940|ref|YP_003859228.1| - 4.8e-06 25.9 0.2 1.1e-05 24.7 0.1 1.5 1 1 0 1 1 1 1 Beta-galactosidase Cellulase PF00150.13 gi|305662940|ref|YP_003859228.1| - 0.00033 19.9 0.0 0.00066 18.9 0.0 1.4 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Bactofilin PF04519.8 gi|305662941|ref|YP_003859229.1| - 5.1e-06 26.4 15.1 0.0048 16.8 1.9 3.0 1 1 2 3 3 3 3 Polymer-forming cytoskeletal MFS_1 PF07690.11 gi|305662942|ref|YP_003859230.1| - 2.4e-36 125.1 47.1 1.3e-31 109.6 23.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|305662942|ref|YP_003859230.1| - 8.6e-08 31.1 12.4 8.6e-08 31.1 8.6 2.2 1 1 1 2 2 2 1 Sugar (and other) transporter ATG22 PF11700.3 gi|305662942|ref|YP_003859230.1| - 0.055 11.9 45.2 0.68 8.3 20.3 2.1 1 1 1 2 2 2 0 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|305662942|ref|YP_003859230.1| - 1.2 9.0 21.3 0.035 13.8 1.5 4.4 4 1 1 5 5 5 0 MFS_1 like family NAD_binding_2 PF03446.10 gi|305662943|ref|YP_003859231.1| - 3.7e-27 95.1 0.0 5.1e-27 94.7 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|305662943|ref|YP_003859231.1| - 9.6e-08 32.1 0.0 1.6e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|305662943|ref|YP_003859231.1| - 6.3e-07 28.7 0.1 9.4e-07 28.1 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|305662943|ref|YP_003859231.1| - 1.5e-06 28.4 0.0 2.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|305662943|ref|YP_003859231.1| - 4.5e-06 26.8 0.1 6.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|305662943|ref|YP_003859231.1| - 0.0061 15.9 0.0 0.02 14.3 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|305662943|ref|YP_003859231.1| - 0.013 15.1 0.1 0.022 14.4 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|305662943|ref|YP_003859231.1| - 0.023 14.0 0.0 0.037 13.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain GFO_IDH_MocA PF01408.17 gi|305662943|ref|YP_003859231.1| - 0.023 15.1 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Epimerase PF01370.16 gi|305662943|ref|YP_003859231.1| - 0.028 13.8 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|305662943|ref|YP_003859231.1| - 0.033 14.1 0.2 0.088 12.8 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain Rossmann-like PF10727.4 gi|305662943|ref|YP_003859231.1| - 0.055 13.2 0.0 0.097 12.3 0.0 1.4 1 0 0 1 1 1 0 Rossmann-like domain UDPG_MGDP_dh_N PF03721.9 gi|305662943|ref|YP_003859231.1| - 0.07 12.5 0.2 0.67 9.3 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|305662943|ref|YP_003859231.1| - 0.14 11.8 0.2 2.6 7.7 0.1 2.6 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Kelch_1 PF01344.20 gi|305662944|ref|YP_003859232.1| - 0.091 12.3 2.8 0.2 11.2 0.2 2.7 2 0 0 2 2 2 0 Kelch motif Kelch_2 PF07646.10 gi|305662944|ref|YP_003859232.1| - 0.13 12.0 0.1 0.42 10.4 0.1 1.9 1 0 0 1 1 1 0 Kelch motif Peptidase_M48 PF01435.13 gi|305662945|ref|YP_003859233.1| - 1.6e-39 135.7 0.0 3.3e-39 134.7 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 PSII_Pbs27 PF13326.1 gi|305662945|ref|YP_003859233.1| - 0.1 12.5 0.1 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 Photosystem II Pbs27 FAM163 PF15069.1 gi|305662945|ref|YP_003859233.1| - 0.11 13.0 0.1 0.11 13.0 0.1 1.6 2 0 0 2 2 2 0 FAM163 family Peptidase_M56 PF05569.6 gi|305662945|ref|YP_003859233.1| - 1.5 7.6 10.8 0.049 12.5 3.1 1.7 2 1 0 2 2 2 0 BlaR1 peptidase M56 Ninjurin PF04923.7 gi|305662945|ref|YP_003859233.1| - 2.1 8.1 6.2 1.2 8.9 0.1 2.6 2 0 0 2 2 2 0 Ninjurin TM_helix PF05552.7 gi|305662946|ref|YP_003859234.1| - 8.7e-08 31.7 15.5 4.3e-06 26.3 2.9 4.2 5 0 0 5 5 5 2 Conserved TM helix DUF429 PF04250.8 gi|305662947|ref|YP_003859235.1| - 3.4e-19 68.9 0.0 5.2e-19 68.3 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF429) DUF998 PF06197.8 gi|305662948|ref|YP_003859236.1| - 1.8e-25 89.2 22.1 2.1e-25 89.1 15.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) PmbA_TldD PF01523.11 gi|305662949|ref|YP_003859237.1| - 7.3e-63 212.5 0.1 1.1e-62 212.0 0.0 1.2 1 0 0 1 1 1 1 Putative modulator of DNA gyrase HEPN PF05168.9 gi|305662950|ref|YP_003859238.1| - 3.6e-18 65.5 1.0 4.8e-18 65.1 0.7 1.2 1 0 0 1 1 1 1 HEPN domain TPR_12 PF13424.1 gi|305662950|ref|YP_003859238.1| - 0.16 11.9 0.8 1.1 9.2 0.0 2.4 2 1 0 2 2 2 0 Tetratricopeptide repeat NTP_transf_2 PF01909.18 gi|305662951|ref|YP_003859239.1| - 4.4e-07 30.1 0.4 5e-07 29.9 0.3 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_5 PF01022.15 gi|305662952|ref|YP_003859240.1| - 3.9e-09 36.0 0.1 5.5e-09 35.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|305662952|ref|YP_003859240.1| - 2.7e-08 33.0 0.0 4.5e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|305662952|ref|YP_003859240.1| - 3.9e-08 32.8 0.1 6.2e-08 32.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|305662952|ref|YP_003859240.1| - 2.3e-07 30.5 0.0 3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|305662952|ref|YP_003859240.1| - 1.3e-06 27.8 0.0 2.1e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|305662952|ref|YP_003859240.1| - 0.00021 20.8 0.0 0.00034 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|305662952|ref|YP_003859240.1| - 0.0018 18.5 0.0 0.0025 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|305662952|ref|YP_003859240.1| - 0.0048 16.5 0.0 0.0086 15.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|305662952|ref|YP_003859240.1| - 0.006 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|305662952|ref|YP_003859240.1| - 0.0095 15.3 0.0 0.019 14.4 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.14 gi|305662952|ref|YP_003859240.1| - 0.011 15.6 0.1 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|305662952|ref|YP_003859240.1| - 0.015 14.9 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family MerR_1 PF13411.1 gi|305662952|ref|YP_003859240.1| - 0.02 14.6 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein Rrf2 PF02082.15 gi|305662952|ref|YP_003859240.1| - 0.021 14.9 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator GerE PF00196.14 gi|305662952|ref|YP_003859240.1| - 0.029 13.6 0.0 0.049 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family SpoIIID PF12116.3 gi|305662952|ref|YP_003859240.1| - 0.051 13.5 0.0 0.15 12.0 0.0 1.8 1 1 1 2 2 2 0 Stage III sporulation protein D LexA_DNA_bind PF01726.11 gi|305662952|ref|YP_003859240.1| - 0.052 13.1 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_28 PF13518.1 gi|305662952|ref|YP_003859240.1| - 0.058 13.4 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.7 gi|305662952|ref|YP_003859240.1| - 0.069 12.7 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) DUF2250 PF10007.4 gi|305662952|ref|YP_003859240.1| - 0.082 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|305662952|ref|YP_003859240.1| - 0.082 13.0 0.1 0.2 11.7 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|305662952|ref|YP_003859240.1| - 0.13 12.1 0.2 0.17 11.7 0.2 1.5 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC DUF4423 PF14394.1 gi|305662952|ref|YP_003859240.1| - 0.14 11.6 0.0 0.18 11.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Beta_propel PF09826.4 gi|305662953|ref|YP_003859241.1| - 2.3e-131 438.7 1.9 2.9e-131 438.4 1.3 1.1 1 0 0 1 1 1 1 Beta propeller domain ABC2_membrane_3 PF12698.2 gi|305662954|ref|YP_003859242.1| - 3.5e-25 88.7 35.3 4.3e-25 88.4 24.5 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|305662954|ref|YP_003859242.1| - 1.6e-13 50.1 23.1 2.4e-13 49.5 16.0 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305662954|ref|YP_003859242.1| - 4.7e-11 42.3 31.7 8.5e-11 41.4 22.0 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|305662954|ref|YP_003859242.1| - 4.3e-08 32.5 28.1 8.3e-05 21.8 15.8 2.9 2 1 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|305662954|ref|YP_003859242.1| - 2e-06 27.2 10.9 2e-06 27.2 7.5 3.6 4 1 0 4 4 4 1 ABC-2 family transporter protein RNA_pol PF00940.14 gi|305662954|ref|YP_003859242.1| - 0.0079 14.7 0.1 0.011 14.2 0.0 1.2 1 0 0 1 1 1 1 DNA-dependent RNA polymerase ABC_tran PF00005.22 gi|305662955|ref|YP_003859243.1| - 4.9e-26 91.6 0.0 6.5e-26 91.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662955|ref|YP_003859243.1| - 1.2e-12 48.4 0.0 1.1e-10 41.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|305662955|ref|YP_003859243.1| - 0.0001 21.8 0.1 0.0013 18.2 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|305662955|ref|YP_003859243.1| - 0.0002 21.7 0.4 0.00038 20.8 0.3 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305662955|ref|YP_003859243.1| - 0.00053 19.4 0.2 0.00098 18.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|305662955|ref|YP_003859243.1| - 0.001 19.2 0.0 0.0016 18.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305662955|ref|YP_003859243.1| - 0.001 18.1 0.0 0.14 11.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|305662955|ref|YP_003859243.1| - 0.0011 18.2 0.2 0.6 9.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305662955|ref|YP_003859243.1| - 0.0033 17.4 0.0 0.0049 16.8 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|305662955|ref|YP_003859243.1| - 0.01 15.5 0.2 0.023 14.4 0.1 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_30 PF13604.1 gi|305662955|ref|YP_003859243.1| - 0.012 15.1 0.0 0.027 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305662955|ref|YP_003859243.1| - 0.014 15.5 0.0 0.033 14.3 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|305662955|ref|YP_003859243.1| - 0.021 14.4 0.0 0.046 13.3 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AvrPphF-ORF-2 PF09143.5 gi|305662955|ref|YP_003859243.1| - 0.025 14.3 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 AvrPphF-ORF-2 AAA_17 PF13207.1 gi|305662955|ref|YP_003859243.1| - 0.029 15.1 0.2 0.062 14.1 0.1 1.6 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|305662955|ref|YP_003859243.1| - 0.054 13.2 0.1 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|305662955|ref|YP_003859243.1| - 0.074 12.7 0.2 0.34 10.6 0.1 2.0 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|305662955|ref|YP_003859243.1| - 0.075 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305662955|ref|YP_003859243.1| - 0.091 12.2 0.0 0.18 11.2 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain TM_helix PF05552.7 gi|305662957|ref|YP_003859245.1| - 0.22 11.2 2.6 0.22 11.2 1.8 1.1 1 0 0 1 1 1 0 Conserved TM helix TPPK_C PF12555.3 gi|305662957|ref|YP_003859245.1| - 1.2 8.9 4.6 1.4 8.7 3.2 1.1 1 0 0 1 1 1 0 Thiamine pyrophosphokinase C terminal Asp_protease_2 PF13650.1 gi|305662958|ref|YP_003859246.1| - 1.3e-09 38.3 0.1 2.2e-09 37.6 0.1 1.5 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|305662958|ref|YP_003859246.1| - 1.1e-06 28.3 0.0 1.9e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|305662958|ref|YP_003859246.1| - 4e-06 26.6 0.1 4.7e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Retroviral aspartyl protease Pribosyltran PF00156.22 gi|305662958|ref|YP_003859246.1| - 0.039 13.6 0.1 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase domain DUF1758 PF05585.7 gi|305662958|ref|YP_003859246.1| - 0.08 12.4 0.0 0.095 12.2 0.0 1.3 1 1 0 1 1 1 0 Putative peptidase (DUF1758) Radical_SAM PF04055.16 gi|305662959|ref|YP_003859247.1| - 4.4e-10 39.9 0.6 2e-09 37.8 0.1 2.2 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|305662959|ref|YP_003859247.1| - 3.4e-07 30.3 0.0 7e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|305662959|ref|YP_003859247.1| - 6.3e-06 26.3 0.0 2.1e-05 24.6 0.0 1.9 2 1 0 2 2 2 1 4Fe-4S single cluster domain AP_endonuc_2 PF01261.19 gi|305662959|ref|YP_003859247.1| - 0.0019 17.4 0.1 0.0039 16.5 0.1 1.4 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NTP_transf_2 PF01909.18 gi|305662960|ref|YP_003859248.1| - 0.00075 19.7 1.3 0.001 19.3 0.2 1.9 2 1 0 2 2 2 1 Nucleotidyltransferase domain Peptidase_M50 PF02163.17 gi|305662961|ref|YP_003859249.1| - 1.2e-23 83.0 0.6 2.9e-22 78.5 0.0 2.8 2 2 0 2 2 2 1 Peptidase family M50 PNRC PF15365.1 gi|305662961|ref|YP_003859249.1| - 0.0094 15.9 0.1 0.018 15.0 0.1 1.4 1 0 0 1 1 1 1 Proline-rich nuclear receptor coactivator Acetyltransf_1 PF00583.19 gi|305662962|ref|YP_003859250.1| - 1.3e-21 76.3 0.1 1.7e-21 76.0 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|305662962|ref|YP_003859250.1| - 2.8e-13 49.9 0.0 3.4e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|305662962|ref|YP_003859250.1| - 4.4e-13 49.1 0.1 6.1e-13 48.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|305662962|ref|YP_003859250.1| - 2.2e-12 46.5 0.0 3.2e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|305662962|ref|YP_003859250.1| - 6.2e-11 42.4 0.0 8.6e-11 42.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|305662962|ref|YP_003859250.1| - 7.7e-09 35.4 0.0 2.9e-08 33.6 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|305662962|ref|YP_003859250.1| - 2.3e-06 27.5 0.0 3.8e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|305662962|ref|YP_003859250.1| - 3.4e-05 24.0 0.0 4.1e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|305662962|ref|YP_003859250.1| - 0.0006 19.4 0.0 0.00067 19.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|305662962|ref|YP_003859250.1| - 0.0039 17.1 0.0 0.0062 16.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|305662962|ref|YP_003859250.1| - 0.024 14.4 0.0 0.036 13.9 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltr_2 PF13718.1 gi|305662962|ref|YP_003859250.1| - 0.14 11.4 0.0 0.32 10.2 0.0 1.6 2 0 0 2 2 2 0 GNAT acetyltransferase 2 DNA_pol_B PF00136.16 gi|305662963|ref|YP_003859251.1| - 1.2e-89 301.2 0.1 1.7e-89 300.7 0.1 1.1 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|305662963|ref|YP_003859251.1| - 8.5e-40 136.5 3.6 1e-39 136.3 0.9 2.2 2 1 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|305662963|ref|YP_003859251.1| - 1.1e-14 54.6 0.3 3.2e-14 53.0 0.0 2.0 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|305662963|ref|YP_003859251.1| - 2.6e-08 33.6 0.0 5.4e-08 32.6 0.0 1.4 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Toprim_4 PF13662.1 gi|305662964|ref|YP_003859252.1| - 2.8e-12 46.4 0.3 6e-12 45.4 0.2 1.6 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|305662964|ref|YP_003859252.1| - 1.6e-06 28.0 0.2 1.6e-06 28.0 0.1 2.8 3 1 1 4 4 4 1 Toprim domain Toprim_2 PF13155.1 gi|305662964|ref|YP_003859252.1| - 6.8e-05 23.1 0.0 0.00021 21.5 0.0 1.9 1 1 0 1 1 1 1 Toprim-like AAA_23 PF13476.1 gi|305662964|ref|YP_003859252.1| - 0.085 13.1 0.7 0.18 12.0 0.5 1.6 1 1 0 1 1 1 0 AAA domain HsbA PF12296.3 gi|305662964|ref|YP_003859252.1| - 0.15 11.9 1.4 0.27 11.0 0.3 2.0 2 0 0 2 2 2 0 Hydrophobic surface binding protein A tRNA-synt_1b PF00579.20 gi|305662965|ref|YP_003859253.1| - 9.8e-47 159.4 0.0 1.2e-32 113.2 0.0 2.0 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) B5 PF03484.10 gi|305662966|ref|YP_003859254.1| - 1.5e-14 53.5 0.3 1.5e-14 53.5 0.2 3.2 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|305662966|ref|YP_003859254.1| - 7e-09 35.3 0.1 1.1e-08 34.7 0.1 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|305662967|ref|YP_003859255.1| - 6.1e-79 264.7 0.0 8.9e-79 264.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|305662967|ref|YP_003859255.1| - 1.3e-06 27.4 2.6 0.0048 15.7 0.0 3.3 3 0 0 3 3 3 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|305662967|ref|YP_003859255.1| - 0.0003 20.4 0.4 0.01 15.4 0.1 2.3 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) MarR_2 PF12802.2 gi|305662967|ref|YP_003859255.1| - 0.015 14.9 0.1 0.19 11.4 0.0 2.8 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|305662967|ref|YP_003859255.1| - 0.024 14.9 0.1 0.075 13.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|305662967|ref|YP_003859255.1| - 0.039 13.6 4.5 0.29 10.8 0.2 3.3 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB FeoC PF09012.5 gi|305662967|ref|YP_003859255.1| - 0.057 13.1 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR PF01047.17 gi|305662967|ref|YP_003859255.1| - 0.1 12.3 0.0 1.5 8.5 0.0 2.6 2 0 0 2 2 2 0 MarR family HTH_Tnp_Tc5 PF03221.11 gi|305662968|ref|YP_003859256.1| - 0.0087 15.8 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Tc5 transposase DNA-binding domain PmbA_TldD PF01523.11 gi|305662969|ref|YP_003859257.1| - 2.2e-41 142.0 0.0 2.7e-41 141.7 0.0 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF4089 PF13318.1 gi|305662969|ref|YP_003859257.1| - 0.0096 16.2 0.0 0.026 14.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF4089) SNO PF01174.14 gi|305662970|ref|YP_003859258.1| - 3.2e-47 160.6 0.0 3.6e-47 160.4 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|305662970|ref|YP_003859258.1| - 7.8e-12 45.0 0.1 1.6e-11 44.0 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|305662970|ref|YP_003859258.1| - 7.6e-08 32.0 0.1 7.4e-07 28.8 0.1 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|305662970|ref|YP_003859258.1| - 2.3e-07 30.6 0.0 2.9e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|305662970|ref|YP_003859258.1| - 0.00028 20.3 0.0 0.00035 20.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Turandot PF07240.6 gi|305662970|ref|YP_003859258.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Stress-inducible humoral factor Turandot Peptidase_C26 PF07722.8 gi|305662970|ref|YP_003859258.1| - 0.14 11.5 0.0 0.57 9.5 0.0 2.0 1 1 0 1 1 1 0 Peptidase C26 SOR_SNZ PF01680.12 gi|305662971|ref|YP_003859259.1| - 3.1e-91 304.6 3.8 4.2e-91 304.1 2.6 1.2 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|305662971|ref|YP_003859259.1| - 2e-07 30.3 2.9 1.1e-05 24.7 0.2 2.4 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|305662971|ref|YP_003859259.1| - 0.00018 20.8 1.5 0.0013 17.9 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase Dus PF01207.12 gi|305662971|ref|YP_003859259.1| - 0.00022 20.1 0.4 0.058 12.2 0.0 2.4 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|305662971|ref|YP_003859259.1| - 0.0005 19.5 0.5 0.63 9.3 0.0 2.6 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family His_biosynth PF00977.16 gi|305662971|ref|YP_003859259.1| - 0.0013 18.0 0.6 1.6 7.9 0.0 3.0 2 1 1 3 3 3 2 Histidine biosynthesis protein NanE PF04131.9 gi|305662971|ref|YP_003859259.1| - 0.0093 14.9 0.9 0.27 10.1 0.0 2.6 3 0 0 3 3 3 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|305662971|ref|YP_003859259.1| - 0.012 14.6 0.0 0.061 12.3 0.0 2.0 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|305662971|ref|YP_003859259.1| - 0.013 14.0 0.0 0.023 13.2 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain NUDIX PF00293.23 gi|305662972|ref|YP_003859260.1| - 3.2e-21 75.3 0.0 3.4e-21 75.2 0.0 1.0 1 0 0 1 1 1 1 NUDIX domain Herpes_U44 PF04533.8 gi|305662973|ref|YP_003859261.1| - 0.00042 19.6 0.1 0.00063 19.0 0.1 1.2 1 0 0 1 1 1 1 Herpes virus U44 protein DUF2645 PF10840.3 gi|305662973|ref|YP_003859261.1| - 0.013 15.6 0.8 0.026 14.6 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2645) RmuC PF02646.11 gi|305662974|ref|YP_003859262.1| - 6e-06 25.3 2.2 0.00047 19.1 0.3 2.1 1 1 2 3 3 3 2 RmuC family DUF1664 PF07889.7 gi|305662974|ref|YP_003859262.1| - 0.00012 21.8 0.5 0.23 11.2 0.0 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Tropomyosin PF00261.15 gi|305662974|ref|YP_003859262.1| - 0.00044 19.4 9.3 0.00044 19.4 6.4 1.7 1 1 0 1 1 1 1 Tropomyosin EzrA PF06160.7 gi|305662974|ref|YP_003859262.1| - 0.00045 18.5 1.9 0.00045 18.5 1.3 1.7 2 0 0 2 2 2 1 Septation ring formation regulator, EzrA PAXNEB PF05625.6 gi|305662974|ref|YP_003859262.1| - 0.00087 18.2 0.1 0.0017 17.2 0.1 1.5 1 0 0 1 1 1 1 PAXNEB protein Nup54 PF13874.1 gi|305662974|ref|YP_003859262.1| - 0.0011 18.6 1.5 0.0011 18.6 1.1 1.6 2 0 0 2 2 1 1 Nucleoporin complex subunit 54 Tropomyosin_1 PF12718.2 gi|305662974|ref|YP_003859262.1| - 0.0041 16.9 0.7 0.0041 16.9 0.5 2.4 2 1 0 2 2 2 1 Tropomyosin like DUF342 PF03961.8 gi|305662974|ref|YP_003859262.1| - 0.017 13.5 2.2 0.051 11.9 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF342) Occludin_ELL PF07303.8 gi|305662974|ref|YP_003859262.1| - 0.028 15.1 11.3 0.064 13.9 2.6 3.7 1 1 2 3 3 3 0 Occludin homology domain Phage_GPO PF05929.6 gi|305662974|ref|YP_003859262.1| - 0.053 12.7 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase FliD_C PF07195.7 gi|305662974|ref|YP_003859262.1| - 0.14 11.3 0.3 1.8 7.7 0.3 2.2 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Fib_alpha PF08702.5 gi|305662974|ref|YP_003859262.1| - 0.18 11.8 1.0 0.48 10.5 0.1 2.1 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.4 gi|305662974|ref|YP_003859262.1| - 0.22 11.6 2.6 0.28 11.3 0.2 2.3 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|305662974|ref|YP_003859262.1| - 0.22 11.1 12.5 0.041 13.4 5.0 2.2 2 1 0 2 2 2 0 IncA protein HSBP1 PF06825.7 gi|305662974|ref|YP_003859262.1| - 0.46 10.0 4.5 0.29 10.7 0.4 2.5 1 1 0 2 2 2 0 Heat shock factor binding protein 1 Exonuc_VII_S PF02609.11 gi|305662974|ref|YP_003859262.1| - 1.2 8.9 5.7 5.4 6.8 2.0 2.6 2 0 0 2 2 2 0 Exonuclease VII small subunit RPW8 PF05659.6 gi|305662974|ref|YP_003859262.1| - 1.8 8.0 6.5 4.9 6.6 1.2 3.0 2 1 1 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Vac_Fusion PF02346.11 gi|305662974|ref|YP_003859262.1| - 2 7.8 15.7 11 5.5 2.5 4.2 2 1 1 4 4 4 0 Chordopoxvirus fusion protein Hemagglutinin PF00509.13 gi|305662974|ref|YP_003859262.1| - 2.5 6.1 5.2 12 3.9 0.6 2.3 1 1 1 2 2 2 0 Haemagglutinin V_ATPase_I PF01496.14 gi|305662974|ref|YP_003859262.1| - 4.8 4.9 9.7 7.7 4.2 6.5 1.4 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF2139 PF09910.4 gi|305662975|ref|YP_003859263.1| - 5.6e-35 120.9 0.1 8.2e-35 120.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2139) SBP_bac_5 PF00496.17 gi|305662976|ref|YP_003859264.1| - 8.1e-50 169.7 5.4 1.7e-49 168.6 3.7 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ABC_tran PF00005.22 gi|305662977|ref|YP_003859265.1| - 2.3e-30 105.6 0.0 3e-30 105.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305662977|ref|YP_003859265.1| - 5.2e-09 36.4 2.9 7.9e-07 29.3 1.1 2.1 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|305662977|ref|YP_003859265.1| - 1.3e-06 28.6 0.1 2.4e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.1 gi|305662977|ref|YP_003859265.1| - 0.00012 22.1 0.7 0.00091 19.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305662977|ref|YP_003859265.1| - 0.00086 19.3 0.0 0.0012 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|305662977|ref|YP_003859265.1| - 0.0015 18.0 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|305662977|ref|YP_003859265.1| - 0.0036 17.0 0.0 0.0071 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|305662977|ref|YP_003859265.1| - 0.0038 17.5 0.0 0.0084 16.4 0.0 1.7 2 0 0 2 2 1 1 AAA domain MobB PF03205.9 gi|305662977|ref|YP_003859265.1| - 0.0078 15.9 0.0 0.013 15.2 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|305662977|ref|YP_003859265.1| - 0.011 14.6 0.0 0.017 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.13 gi|305662977|ref|YP_003859265.1| - 0.016 14.7 0.0 0.024 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family UPF0079 PF02367.12 gi|305662977|ref|YP_003859265.1| - 0.017 14.7 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Zeta_toxin PF06414.7 gi|305662977|ref|YP_003859265.1| - 0.022 13.8 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin RNA_helicase PF00910.17 gi|305662977|ref|YP_003859265.1| - 0.028 14.5 0.0 0.071 13.2 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_33 PF13671.1 gi|305662977|ref|YP_003859265.1| - 0.031 14.1 0.0 0.054 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|305662977|ref|YP_003859265.1| - 0.033 14.5 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305662977|ref|YP_003859265.1| - 0.048 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF87 PF01935.12 gi|305662977|ref|YP_003859265.1| - 0.055 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_19 PF13245.1 gi|305662977|ref|YP_003859265.1| - 0.061 13.0 0.0 0.14 11.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_15 PF13175.1 gi|305662977|ref|YP_003859265.1| - 0.069 12.1 0.4 0.82 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain BCA_ABC_TP_C PF12399.3 gi|305662977|ref|YP_003859265.1| - 0.072 12.7 0.4 0.14 11.9 0.0 1.7 2 0 0 2 2 1 0 Branched-chain amino acid ATP-binding cassette transporter T2SE PF00437.15 gi|305662977|ref|YP_003859265.1| - 0.076 11.8 0.2 0.14 10.9 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.24 gi|305662977|ref|YP_003859265.1| - 0.086 13.0 0.0 0.4 10.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.15 gi|305662977|ref|YP_003859265.1| - 0.17 10.5 0.0 0.23 10.0 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.1 gi|305662977|ref|YP_003859265.1| - 0.17 12.6 1.3 0.33 11.7 0.9 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|305662978|ref|YP_003859266.1| - 1.4e-25 90.2 0.0 1.9e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305662978|ref|YP_003859266.1| - 4e-19 68.7 0.1 8.4e-19 67.6 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305662978|ref|YP_003859266.1| - 7.9e-10 39.1 0.0 2.8e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305662978|ref|YP_003859266.1| - 0.0012 18.9 0.1 0.004 17.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305662978|ref|YP_003859266.1| - 0.0014 19.3 0.4 0.0029 18.4 0.3 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305662978|ref|YP_003859266.1| - 0.0019 18.3 0.0 0.014 15.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|305662978|ref|YP_003859266.1| - 0.0028 17.9 0.0 0.0051 17.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|305662978|ref|YP_003859266.1| - 0.0035 17.0 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain PhoH PF02562.11 gi|305662978|ref|YP_003859266.1| - 0.0043 16.3 0.0 0.013 14.7 0.0 1.7 1 1 0 1 1 1 1 PhoH-like protein NB-ARC PF00931.17 gi|305662978|ref|YP_003859266.1| - 0.0048 15.8 0.0 0.0077 15.1 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain SMC_N PF02463.14 gi|305662978|ref|YP_003859266.1| - 0.0051 16.0 0.1 0.028 13.6 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305662978|ref|YP_003859266.1| - 0.0051 16.8 0.2 0.01 15.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|305662978|ref|YP_003859266.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305662978|ref|YP_003859266.1| - 0.016 14.3 0.0 0.026 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|305662978|ref|YP_003859266.1| - 0.026 14.2 0.0 0.044 13.4 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|305662978|ref|YP_003859266.1| - 0.035 14.2 0.0 0.071 13.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PRK PF00485.13 gi|305662978|ref|YP_003859266.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KaiC PF06745.8 gi|305662978|ref|YP_003859266.1| - 0.045 12.8 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 KaiC AAA_23 PF13476.1 gi|305662978|ref|YP_003859266.1| - 0.052 13.8 0.1 0.16 12.2 0.0 1.6 1 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|305662978|ref|YP_003859266.1| - 0.057 13.2 0.0 0.45 10.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF87 Arch_ATPase PF01637.13 gi|305662978|ref|YP_003859266.1| - 0.11 12.1 0.3 3.5 7.2 0.0 2.3 2 1 0 2 2 2 0 Archaeal ATPase AAA_5 PF07728.9 gi|305662978|ref|YP_003859266.1| - 0.12 12.1 0.0 0.26 10.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.17 gi|305662979|ref|YP_003859267.1| - 1.4e-22 80.1 24.7 1.4e-22 80.1 17.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305662979|ref|YP_003859267.1| - 0.19 11.1 0.1 0.19 11.1 0.1 4.1 5 0 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|305662980|ref|YP_003859268.1| - 4.3e-41 140.4 14.8 4.3e-41 140.4 10.3 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FliG_M PF14841.1 gi|305662980|ref|YP_003859268.1| - 0.15 12.0 0.1 0.55 10.2 0.1 1.9 1 1 0 1 1 1 0 FliG middle domain Macro PF01661.16 gi|305662981|ref|YP_003859269.1| - 1.3e-27 96.0 0.2 1.6e-27 95.7 0.2 1.1 1 0 0 1 1 1 1 Macro domain Macro_2 PF14519.1 gi|305662981|ref|YP_003859269.1| - 6.6e-07 28.7 0.6 3.8e-06 26.2 0.4 2.0 1 1 0 1 1 1 1 Macro-like domain Ribosomal_S11 PF00411.14 gi|305662981|ref|YP_003859269.1| - 0.032 14.4 0.1 0.052 13.7 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S11 ATP_bind_3 PF01171.15 gi|305662983|ref|YP_003859271.1| - 1.1e-16 60.9 0.0 2.5e-16 59.7 0.0 1.5 1 1 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|305662983|ref|YP_003859271.1| - 1.1e-05 25.3 0.0 6.8e-05 22.7 0.0 2.1 1 1 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family RecR PF02132.10 gi|305662983|ref|YP_003859271.1| - 0.00019 20.8 1.7 0.00019 20.8 1.2 2.6 3 0 0 3 3 3 1 RecR protein ATP_bind_4 PF01902.12 gi|305662983|ref|YP_003859271.1| - 0.0022 17.3 0.0 0.0044 16.4 0.0 1.5 1 0 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|305662983|ref|YP_003859271.1| - 0.0071 15.6 0.4 0.015 14.6 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|305662983|ref|YP_003859271.1| - 0.019 14.4 0.0 0.028 13.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase DUF4346 PF14251.1 gi|305662984|ref|YP_003859272.1| - 0.017 14.8 0.1 0.079 12.6 0.0 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4346) SPOUT_MTase_2 PF14419.1 gi|305662985|ref|YP_003859273.1| - 8.8e-74 246.4 0.6 1.7e-73 245.4 0.4 1.5 1 0 0 1 1 1 1 AF2226-like SPOUT RNA Methylase fused to THUMP THUMP PF02926.12 gi|305662985|ref|YP_003859273.1| - 9.5e-25 87.1 2.1 1.3e-24 86.7 0.6 1.8 2 0 0 2 2 2 1 THUMP domain DUF531 PF04407.7 gi|305662985|ref|YP_003859273.1| - 0.0046 16.8 0.0 0.0088 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF531) Lactamase_B_2 PF12706.2 gi|305662987|ref|YP_003859275.1| - 1.8e-24 86.3 0.1 2.3e-24 86.0 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305662987|ref|YP_003859275.1| - 2.6e-14 53.3 0.3 3e-14 53.1 0.2 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|305662987|ref|YP_003859275.1| - 0.00024 20.8 0.0 0.00039 20.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HhH-GPD PF00730.20 gi|305662990|ref|YP_003859278.1| - 1.2e-06 28.8 0.0 2.4e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HTH_3 PF01381.17 gi|305662990|ref|YP_003859278.1| - 0.068 13.0 0.1 11 5.9 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix DUF1626 PF07788.6 gi|305662991|ref|YP_003859279.1| - 4.5e-09 35.9 1.9 4.5e-09 35.9 1.3 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1626) ELMO_CED12 PF04727.8 gi|305662991|ref|YP_003859279.1| - 0.024 14.1 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 ELMO/CED-12 family RestrictionSfiI PF11487.3 gi|305662991|ref|YP_003859279.1| - 0.026 13.6 0.2 0.043 12.9 0.1 1.3 1 0 0 1 1 1 0 Type II restriction enzyme SfiI Sec3_C PF09763.4 gi|305662991|ref|YP_003859279.1| - 0.04 12.0 0.3 0.04 12.0 0.2 1.4 2 0 0 2 2 2 0 Exocyst complex component Sec3 FCD PF07729.7 gi|305662991|ref|YP_003859279.1| - 0.11 12.8 0.5 0.2 12.0 0.4 1.4 1 0 0 1 1 1 0 FCD domain ATG16 PF08614.6 gi|305662991|ref|YP_003859279.1| - 0.5 10.1 5.2 0.074 12.8 1.1 1.5 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) HTH_11 PF08279.7 gi|305662993|ref|YP_003859281.1| - 4.5e-06 26.2 0.3 1.7e-05 24.3 0.0 2.2 2 0 0 2 2 1 1 HTH domain HTH_24 PF13412.1 gi|305662993|ref|YP_003859281.1| - 2.5e-05 23.5 0.0 6.1e-05 22.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding FaeA PF04703.7 gi|305662993|ref|YP_003859281.1| - 0.00018 21.5 0.4 0.00082 19.4 0.0 2.2 3 0 0 3 3 1 1 FaeA-like protein DUF2250 PF10007.4 gi|305662993|ref|YP_003859281.1| - 0.00071 19.4 0.2 0.0027 17.5 0.0 2.0 2 0 0 2 2 1 1 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|305662993|ref|YP_003859281.1| - 0.00074 18.7 1.5 0.72 8.9 1.4 2.2 2 0 0 2 2 2 2 EAP30/Vps36 family ACR_tran PF00873.14 gi|305662993|ref|YP_003859281.1| - 0.00085 16.8 1.7 0.001 16.6 1.2 1.1 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family DUF4423 PF14394.1 gi|305662993|ref|YP_003859281.1| - 0.001 18.6 2.7 0.0058 16.1 0.6 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Rrf2 PF02082.15 gi|305662993|ref|YP_003859281.1| - 0.0014 18.7 0.3 0.0048 16.9 0.0 2.0 2 1 0 2 2 1 1 Transcriptional regulator TFIIE_alpha PF02002.12 gi|305662993|ref|YP_003859281.1| - 0.0017 17.8 3.0 0.0047 16.4 0.0 2.7 2 1 0 3 3 3 1 TFIIE alpha subunit TrmB PF01978.14 gi|305662993|ref|YP_003859281.1| - 0.0019 17.8 0.1 0.006 16.2 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|305662993|ref|YP_003859281.1| - 0.002 17.7 0.1 0.0088 15.7 0.0 2.2 2 0 0 2 2 2 1 MarR family Cortex-I_coil PF09304.5 gi|305662993|ref|YP_003859281.1| - 0.0025 17.8 2.0 0.0051 16.8 1.4 1.5 1 0 0 1 1 1 1 Cortexillin I, coiled coil HTH_23 PF13384.1 gi|305662993|ref|YP_003859281.1| - 0.0038 16.8 1.2 0.011 15.3 0.0 2.4 3 0 0 3 3 2 1 Homeodomain-like domain AAA_13 PF13166.1 gi|305662993|ref|YP_003859281.1| - 0.0054 15.2 6.4 0.0063 15.0 4.5 1.0 1 0 0 1 1 1 1 AAA domain HTH_Crp_2 PF13545.1 gi|305662993|ref|YP_003859281.1| - 0.0077 15.9 0.0 0.025 14.3 0.0 1.8 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain FlaC_arch PF05377.6 gi|305662993|ref|YP_003859281.1| - 0.0083 16.0 1.0 0.0083 16.0 0.7 2.6 2 1 1 3 3 3 1 Flagella accessory protein C (FlaC) AKNA PF12443.3 gi|305662993|ref|YP_003859281.1| - 0.011 15.7 1.9 0.014 15.3 0.6 1.7 2 0 0 2 2 1 0 AT-hook-containing transcription factor BAR_2 PF10455.4 gi|305662993|ref|YP_003859281.1| - 0.024 13.5 0.5 0.04 12.8 0.3 1.4 1 1 0 1 1 1 0 Bin/amphiphysin/Rvs domain for vesicular trafficking Cep57_MT_bd PF06657.8 gi|305662993|ref|YP_003859281.1| - 0.026 14.4 0.5 0.052 13.4 0.3 1.6 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 GntR PF00392.16 gi|305662993|ref|YP_003859281.1| - 0.032 13.6 0.1 0.15 11.4 0.0 2.2 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family P4Ha_N PF08336.6 gi|305662993|ref|YP_003859281.1| - 0.033 13.9 2.3 0.047 13.4 0.7 1.8 1 1 1 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region TBPIP PF07106.8 gi|305662993|ref|YP_003859281.1| - 0.035 13.6 4.8 0.054 13.0 3.3 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MarR_2 PF12802.2 gi|305662993|ref|YP_003859281.1| - 0.043 13.4 0.0 0.13 11.9 0.0 1.8 1 0 0 1 1 1 0 MarR family Prefoldin_2 PF01920.15 gi|305662993|ref|YP_003859281.1| - 0.044 13.5 1.8 0.044 13.5 1.3 2.3 2 1 0 2 2 2 0 Prefoldin subunit PRD PF00874.15 gi|305662993|ref|YP_003859281.1| - 0.047 13.8 0.5 3.2 7.9 0.0 2.4 1 1 0 2 2 2 0 PRD domain FeoC PF09012.5 gi|305662993|ref|YP_003859281.1| - 0.051 13.2 0.0 0.17 11.6 0.0 1.9 1 0 0 1 1 1 0 FeoC like transcriptional regulator Allexi_40kDa PF05549.6 gi|305662993|ref|YP_003859281.1| - 0.057 12.7 3.1 0.094 11.9 1.4 1.6 1 1 0 1 1 1 0 Allexivirus 40kDa protein Baculo_PEP_C PF04513.7 gi|305662993|ref|YP_003859281.1| - 0.059 13.2 8.2 0.29 10.9 5.7 1.9 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fungal_trans_2 PF11951.3 gi|305662993|ref|YP_003859281.1| - 0.061 11.9 2.5 0.078 11.5 1.7 1.1 1 0 0 1 1 1 0 Fungal specific transcription factor domain DUF3818 PF12825.2 gi|305662993|ref|YP_003859281.1| - 0.068 11.8 0.9 0.087 11.4 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) Med9 PF07544.8 gi|305662993|ref|YP_003859281.1| - 0.07 12.8 4.7 0.2 11.3 3.2 1.9 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF3347 PF11827.3 gi|305662993|ref|YP_003859281.1| - 0.082 12.9 0.9 0.13 12.2 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) EMP24_GP25L PF01105.19 gi|305662993|ref|YP_003859281.1| - 0.09 12.4 0.5 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD COG2 PF06148.6 gi|305662993|ref|YP_003859281.1| - 0.097 12.5 1.5 0.3 10.9 0.2 2.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Fmp27_WPPW PF10359.4 gi|305662993|ref|YP_003859281.1| - 0.14 10.5 3.7 0.17 10.2 2.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain HrcA_DNA-bdg PF03444.10 gi|305662993|ref|YP_003859281.1| - 0.14 11.6 1.1 0.5 9.8 0.0 2.4 2 1 1 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding PaaX PF07848.7 gi|305662993|ref|YP_003859281.1| - 0.14 12.1 0.5 0.31 11.0 0.0 1.8 2 0 0 2 2 1 0 PaaX-like protein DUF607 PF04678.8 gi|305662993|ref|YP_003859281.1| - 0.15 11.9 0.3 0.26 11.1 0.1 1.5 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Med4 PF10018.4 gi|305662993|ref|YP_003859281.1| - 0.2 11.0 3.5 0.2 11.0 1.8 1.4 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 Hpt PF01627.18 gi|305662993|ref|YP_003859281.1| - 0.24 11.4 2.5 1.3 9.0 1.3 2.2 1 1 1 2 2 2 0 Hpt domain Sigma70_r3 PF04539.11 gi|305662993|ref|YP_003859281.1| - 0.29 11.0 2.8 5.9 6.8 0.0 3.6 3 1 1 4 4 4 0 Sigma-70 region 3 Mnd1 PF03962.10 gi|305662993|ref|YP_003859281.1| - 0.31 10.6 3.7 0.32 10.6 1.9 1.5 2 0 0 2 2 1 0 Mnd1 family Syntaxin-6_N PF09177.6 gi|305662993|ref|YP_003859281.1| - 0.31 11.4 5.7 0.31 11.4 2.0 2.2 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Flagellin_C PF00700.16 gi|305662993|ref|YP_003859281.1| - 0.38 10.9 6.0 0.26 11.4 2.4 2.0 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region GatB_Yqey PF02637.13 gi|305662993|ref|YP_003859281.1| - 0.48 10.1 7.6 0.81 9.4 5.1 1.5 1 1 0 1 1 1 0 GatB domain CorA PF01544.13 gi|305662993|ref|YP_003859281.1| - 0.62 9.0 5.9 2 7.3 4.1 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|305662993|ref|YP_003859281.1| - 0.7 9.7 5.4 0.49 10.2 1.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) V-SNARE PF05008.10 gi|305662993|ref|YP_003859281.1| - 0.99 9.6 4.9 0.43 10.7 1.6 1.8 2 0 0 2 2 1 0 Vesicle transport v-SNARE protein N-terminus FliT PF05400.8 gi|305662993|ref|YP_003859281.1| - 1.3 9.5 8.2 1.1 9.7 1.0 2.6 1 1 1 2 2 2 0 Flagellar protein FliT Syntaxin PF00804.20 gi|305662993|ref|YP_003859281.1| - 1.5 9.0 10.8 1.3 9.2 5.2 2.4 1 1 2 3 3 3 0 Syntaxin Fib_alpha PF08702.5 gi|305662993|ref|YP_003859281.1| - 1.5 8.9 7.0 0.83 9.7 2.5 2.0 1 1 0 2 2 2 0 Fibrinogen alpha/beta chain family DUF1626 PF07788.6 gi|305662994|ref|YP_003859282.1| - 1.2e-17 63.4 1.4 4.2e-17 61.7 1.0 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) IncA PF04156.9 gi|305662994|ref|YP_003859282.1| - 7.8e-08 32.1 16.2 1.1e-07 31.6 11.3 1.2 1 0 0 1 1 1 1 IncA protein Tropomyosin PF00261.15 gi|305662994|ref|YP_003859282.1| - 1.5e-05 24.2 20.7 2.5e-05 23.4 14.3 1.4 1 0 0 1 1 1 1 Tropomyosin Tropomyosin_1 PF12718.2 gi|305662994|ref|YP_003859282.1| - 2.7e-05 24.0 14.4 0.00028 20.7 3.9 2.3 1 1 1 2 2 2 2 Tropomyosin like BLOC1_2 PF10046.4 gi|305662994|ref|YP_003859282.1| - 0.00012 22.1 5.2 0.0012 18.9 3.3 2.4 1 1 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Vac_Fusion PF02346.11 gi|305662994|ref|YP_003859282.1| - 0.00023 20.5 11.4 0.083 12.3 2.2 3.7 1 1 2 3 3 3 2 Chordopoxvirus fusion protein Reo_sigmaC PF04582.7 gi|305662994|ref|YP_003859282.1| - 0.00071 18.8 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Reovirus sigma C capsid protein DUF342 PF03961.8 gi|305662994|ref|YP_003859282.1| - 0.00082 17.9 7.6 0.0013 17.2 5.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF342) RmuC PF02646.11 gi|305662994|ref|YP_003859282.1| - 0.0035 16.2 7.6 0.041 12.7 1.2 2.1 1 1 1 2 2 2 2 RmuC family DUF3782 PF12644.2 gi|305662994|ref|YP_003859282.1| - 0.0065 16.2 16.1 0.74 9.6 11.2 2.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) T4SS PF07996.6 gi|305662994|ref|YP_003859282.1| - 0.0079 16.0 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion system proteins DUF1664 PF07889.7 gi|305662994|ref|YP_003859282.1| - 0.0081 15.9 1.8 0.0081 15.9 1.2 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Nup54 PF13874.1 gi|305662994|ref|YP_003859282.1| - 0.0083 15.8 11.8 0.012 15.2 5.9 2.6 1 1 1 2 2 2 1 Nucleoporin complex subunit 54 DUF1465 PF07323.7 gi|305662994|ref|YP_003859282.1| - 0.0096 15.4 8.0 0.069 12.7 1.9 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1465) AAA_13 PF13166.1 gi|305662994|ref|YP_003859282.1| - 0.019 13.4 5.9 0.024 13.1 4.1 1.2 1 0 0 1 1 1 0 AAA domain ERM PF00769.14 gi|305662994|ref|YP_003859282.1| - 0.025 14.1 13.9 0.041 13.4 9.6 1.3 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Herpes_UL6 PF01763.11 gi|305662994|ref|YP_003859282.1| - 0.03 12.5 1.0 0.044 11.9 0.7 1.3 1 0 0 1 1 1 0 Herpesvirus UL6 like CENP-Q PF13094.1 gi|305662994|ref|YP_003859282.1| - 0.032 14.2 7.3 0.051 13.5 5.0 1.5 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit GAS PF13851.1 gi|305662994|ref|YP_003859282.1| - 0.044 12.9 10.8 0.079 12.1 7.5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding IFT57 PF10498.4 gi|305662994|ref|YP_003859282.1| - 0.045 12.4 10.3 0.11 11.2 7.2 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF2959 PF11172.3 gi|305662994|ref|YP_003859282.1| - 0.045 13.5 4.0 0.082 12.6 2.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2959) DUF2397 PF09660.5 gi|305662994|ref|YP_003859282.1| - 0.047 12.2 6.5 0.068 11.7 4.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2397) EzrA PF06160.7 gi|305662994|ref|YP_003859282.1| - 0.054 11.6 13.0 0.19 9.8 9.0 1.7 1 1 0 1 1 1 0 Septation ring formation regulator, EzrA TMCO5 PF14992.1 gi|305662994|ref|YP_003859282.1| - 0.056 12.5 11.5 0.082 12.0 8.0 1.2 1 0 0 1 1 1 0 TMCO5 family Spc7 PF08317.6 gi|305662994|ref|YP_003859282.1| - 0.061 11.9 12.8 0.14 10.7 8.9 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein DUF3552 PF12072.3 gi|305662994|ref|YP_003859282.1| - 0.064 12.4 20.8 0.48 9.6 7.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) V_ATPase_I PF01496.14 gi|305662994|ref|YP_003859282.1| - 0.067 11.0 12.0 0.96 7.2 8.3 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2951 PF11166.3 gi|305662994|ref|YP_003859282.1| - 0.067 13.0 14.8 1.3 8.8 0.3 3.7 1 1 3 4 4 3 0 Protein of unknown function (DUF2951) ADIP PF11559.3 gi|305662994|ref|YP_003859282.1| - 0.1 12.4 10.0 0.31 10.9 6.7 1.9 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF4610 PF15384.1 gi|305662994|ref|YP_003859282.1| - 0.11 11.9 0.9 0.21 11.1 0.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4610) DUF972 PF06156.8 gi|305662994|ref|YP_003859282.1| - 0.13 12.6 11.7 1.6 9.0 3.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF972) LemA PF04011.7 gi|305662994|ref|YP_003859282.1| - 0.13 11.3 3.7 0.38 9.8 2.6 1.8 1 1 0 1 1 1 0 LemA family SlyX PF04102.7 gi|305662994|ref|YP_003859282.1| - 0.14 12.5 14.0 0.22 11.9 0.4 3.2 1 1 2 3 3 3 0 SlyX COG2 PF06148.6 gi|305662994|ref|YP_003859282.1| - 0.15 11.9 8.3 1.1 9.0 1.7 2.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1202 PF06717.6 gi|305662994|ref|YP_003859282.1| - 0.17 11.1 1.7 0.69 9.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1202) Tektin PF03148.9 gi|305662994|ref|YP_003859282.1| - 0.18 10.3 9.5 0.32 9.4 6.6 1.4 1 0 0 1 1 1 0 Tektin family DASH_Spc34 PF08657.5 gi|305662994|ref|YP_003859282.1| - 0.21 11.2 7.6 0.71 9.4 5.2 1.9 1 1 0 1 1 1 0 DASH complex subunit Spc34 Fe-S_assembly PF04384.8 gi|305662994|ref|YP_003859282.1| - 0.23 11.8 4.2 11 6.4 0.1 3.1 2 1 1 3 3 2 0 Iron-sulphur cluster assembly Laminin_II PF06009.7 gi|305662994|ref|YP_003859282.1| - 0.24 11.1 4.1 1.2 8.8 2.8 2.0 1 1 0 1 1 1 0 Laminin Domain II GP41 PF00517.12 gi|305662994|ref|YP_003859282.1| - 0.25 10.8 4.9 0.83 9.1 0.7 2.3 1 1 1 2 2 2 0 Retroviral envelope protein Phage_GPO PF05929.6 gi|305662994|ref|YP_003859282.1| - 0.32 10.2 4.2 0.68 9.1 2.9 1.6 1 1 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase Nsp1_C PF05064.8 gi|305662994|ref|YP_003859282.1| - 0.38 10.3 11.1 1.1 8.8 0.7 2.5 1 1 1 2 2 2 0 Nsp1-like C-terminal region Spectrin PF00435.16 gi|305662994|ref|YP_003859282.1| - 0.44 10.8 11.1 11 6.3 7.7 2.5 1 1 0 1 1 1 0 Spectrin repeat CALCOCO1 PF07888.6 gi|305662994|ref|YP_003859282.1| - 0.47 8.6 9.9 0.75 8.0 6.8 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Fib_alpha PF08702.5 gi|305662994|ref|YP_003859282.1| - 0.48 10.5 3.9 0.78 9.8 2.4 1.5 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF479 PF04336.7 gi|305662994|ref|YP_003859282.1| - 0.49 10.5 4.8 15 5.7 1.2 3.0 1 1 3 4 4 4 0 Protein of unknown function, DUF479 DASH_Dad3 PF08656.5 gi|305662994|ref|YP_003859282.1| - 0.5 10.1 3.5 5.5 6.7 0.6 2.7 1 1 1 2 2 2 0 DASH complex subunit Dad3 Snapin_Pallidin PF14712.1 gi|305662994|ref|YP_003859282.1| - 0.53 10.6 8.7 0.38 11.0 2.7 2.5 1 1 2 3 3 3 0 Snapin/Pallidin Sec34 PF04136.10 gi|305662994|ref|YP_003859282.1| - 0.55 9.9 3.9 0.63 9.7 1.8 1.8 1 1 0 1 1 1 0 Sec34-like family TPR_MLP1_2 PF07926.7 gi|305662994|ref|YP_003859282.1| - 0.6 9.8 10.8 1.1 9.0 7.5 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF1515 PF07439.6 gi|305662994|ref|YP_003859282.1| - 0.65 9.8 6.8 0.19 11.5 1.6 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF1515) DUF1043 PF06295.7 gi|305662994|ref|YP_003859282.1| - 0.66 9.6 6.7 0.5 9.9 2.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1043) DUF4298 PF14131.1 gi|305662994|ref|YP_003859282.1| - 0.71 9.7 5.7 10 6.0 0.5 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4298) ATG16 PF08614.6 gi|305662994|ref|YP_003859282.1| - 0.73 9.6 13.1 9.1 6.0 9.1 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF3584 PF12128.3 gi|305662994|ref|YP_003859282.1| - 0.77 7.0 12.1 0.21 8.8 2.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Fmp27_WPPW PF10359.4 gi|305662994|ref|YP_003859282.1| - 0.84 7.9 11.1 3.8 5.8 7.7 1.8 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Occludin_ELL PF07303.8 gi|305662994|ref|YP_003859282.1| - 0.89 10.3 8.7 1.6 9.4 3.6 2.3 1 1 1 2 2 2 0 Occludin homology domain DUF4200 PF13863.1 gi|305662994|ref|YP_003859282.1| - 0.94 9.4 20.9 3.1 7.7 13.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Med3 PF11593.3 gi|305662994|ref|YP_003859282.1| - 1 8.5 2.1 1.3 8.1 1.5 1.2 1 0 0 1 1 1 0 Mediator complex subunit 3 fungal UPF0242 PF06785.6 gi|305662994|ref|YP_003859282.1| - 1 7.9 8.6 1.4 7.5 5.9 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) Seryl_tRNA_N PF02403.17 gi|305662994|ref|YP_003859282.1| - 1 9.4 13.5 0.68 9.9 3.9 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Jnk-SapK_ap_N PF09744.4 gi|305662994|ref|YP_003859282.1| - 1 9.3 17.0 0.24 11.3 6.2 2.5 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 Ring_hydroxyl_B PF00866.13 gi|305662994|ref|YP_003859282.1| - 1.1 8.9 5.2 1.6 8.3 1.4 2.6 1 1 1 2 2 2 0 Ring hydroxylating beta subunit DUF4446 PF14584.1 gi|305662994|ref|YP_003859282.1| - 1.1 9.0 12.6 7.2 6.4 1.5 3.3 2 1 1 3 3 3 0 Protein of unknown function (DUF4446) Spc24 PF08286.6 gi|305662994|ref|YP_003859282.1| - 1.3 8.7 9.9 8.2 6.1 1.0 2.6 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 NBP1 PF08537.5 gi|305662994|ref|YP_003859282.1| - 1.4 8.0 10.7 2.9 6.9 0.2 2.3 1 1 1 2 2 2 0 Fungal Nap binding protein NBP1 MbeD_MobD PF04899.7 gi|305662994|ref|YP_003859282.1| - 1.4 8.8 4.3 22 5.0 2.6 2.5 1 1 0 1 1 1 0 MbeD/MobD like HJURP_C PF12347.3 gi|305662994|ref|YP_003859282.1| - 1.5 8.4 7.8 2.8 7.5 0.4 3.2 3 0 0 3 3 3 0 Holliday junction regulator protein family C-terminal repeat DUF4140 PF13600.1 gi|305662994|ref|YP_003859282.1| - 1.6 9.2 11.5 10 6.6 2.0 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) bZIP_2 PF07716.10 gi|305662994|ref|YP_003859282.1| - 1.7 8.5 18.3 2.8 7.8 1.4 3.5 1 1 2 3 3 3 0 Basic region leucine zipper Med4 PF10018.4 gi|305662994|ref|YP_003859282.1| - 1.9 7.8 10.3 3.2 7.0 2.4 2.6 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 FlaC_arch PF05377.6 gi|305662994|ref|YP_003859282.1| - 2.1 8.2 9.0 23 4.9 2.9 3.2 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DivIC PF04977.10 gi|305662994|ref|YP_003859282.1| - 2.3 7.7 13.7 0.73 9.3 2.6 2.6 1 1 1 2 2 2 0 Septum formation initiator TBPIP PF07106.8 gi|305662994|ref|YP_003859282.1| - 2.5 7.5 11.9 19 4.7 8.1 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF904 PF06005.7 gi|305662994|ref|YP_003859282.1| - 2.6 8.3 18.4 1.4 9.2 8.2 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF904) APG6 PF04111.7 gi|305662994|ref|YP_003859282.1| - 2.9 6.8 14.8 6.8 5.6 10.2 1.6 1 1 0 1 1 1 0 Autophagy protein Apg6 DUF724 PF05266.9 gi|305662994|ref|YP_003859282.1| - 2.9 7.4 12.8 20 4.7 8.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF724) UXS1_N PF11803.3 gi|305662994|ref|YP_003859282.1| - 3.1 7.6 5.6 20 5.0 0.9 2.8 1 1 1 2 2 2 0 UDP-glucuronate decarboxylase N-terminal Cauli_AT PF03233.8 gi|305662994|ref|YP_003859282.1| - 3.4 7.3 7.1 28 4.3 0.4 2.4 1 1 1 2 2 2 0 Aphid transmission protein UPF0449 PF15136.1 gi|305662994|ref|YP_003859282.1| - 4 7.7 8.0 2.9 8.1 0.9 2.4 1 1 0 2 2 2 0 Uncharacterised protein family UPF0449 HalX PF08663.5 gi|305662994|ref|YP_003859282.1| - 4.1 7.4 11.7 29 4.7 2.7 3.8 2 1 0 3 3 2 0 HalX domain Atg14 PF10186.4 gi|305662994|ref|YP_003859282.1| - 5.8 5.7 13.3 1.6 7.5 4.3 1.9 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Mnd1 PF03962.10 gi|305662994|ref|YP_003859282.1| - 6.2 6.4 13.1 58 3.2 9.1 2.2 1 1 0 1 1 1 0 Mnd1 family XhlA PF10779.4 gi|305662994|ref|YP_003859282.1| - 6.2 6.8 13.8 3.3e+03 -2.0 9.6 3.0 1 1 0 1 1 0 0 Haemolysin XhlA DUF607 PF04678.8 gi|305662994|ref|YP_003859282.1| - 6.8 6.5 6.6 7.8 6.3 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function, DUF607 DUF4164 PF13747.1 gi|305662994|ref|YP_003859282.1| - 7.8 6.7 15.0 11 6.2 2.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) EamA PF00892.15 gi|305662995|ref|YP_003859283.1| - 2.7e-24 85.6 37.3 2.7e-17 62.9 11.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|305662995|ref|YP_003859283.1| - 8.5e-07 29.1 8.5 8.5e-07 29.1 5.9 3.2 3 2 0 3 3 3 1 Multidrug resistance efflux transporter DUF4282 PF14110.1 gi|305662995|ref|YP_003859283.1| - 0.011 15.8 0.9 0.011 15.8 0.6 4.3 3 1 1 4 4 4 0 Domain of unknown function (DUF4282) TPT PF03151.11 gi|305662995|ref|YP_003859283.1| - 1.3 8.7 14.5 0.32 10.6 5.1 3.1 2 1 0 2 2 2 0 Triose-phosphate Transporter family KaiC PF06745.8 gi|305662996|ref|YP_003859284.1| - 4.1e-39 134.0 0.1 1.1e-38 132.6 0.0 1.6 2 0 0 2 2 2 1 KaiC GvpD PF07088.6 gi|305662996|ref|YP_003859284.1| - 6.6e-07 28.0 0.3 5.6e-06 24.9 0.2 2.0 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_25 PF13481.1 gi|305662996|ref|YP_003859284.1| - 1.6e-05 24.3 0.0 3.6e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305662996|ref|YP_003859284.1| - 0.00026 20.5 0.0 0.00044 19.7 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|305662996|ref|YP_003859284.1| - 0.0047 16.8 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305662996|ref|YP_003859284.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.6 gi|305662996|ref|YP_003859284.1| - 0.0067 15.3 0.0 0.015 14.2 0.0 1.6 1 0 0 1 1 1 1 Rad51 ABC_tran PF00005.22 gi|305662996|ref|YP_003859284.1| - 0.0077 16.5 0.1 0.016 15.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|305662996|ref|YP_003859284.1| - 0.0095 16.4 0.0 0.038 14.4 0.0 2.0 2 0 0 2 2 1 1 Miro-like protein AAA_19 PF13245.1 gi|305662996|ref|YP_003859284.1| - 0.02 14.6 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain Arch_ATPase PF01637.13 gi|305662996|ref|YP_003859284.1| - 0.02 14.5 0.0 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase FtsK_SpoIIIE PF01580.13 gi|305662996|ref|YP_003859284.1| - 0.021 14.3 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_22 PF13401.1 gi|305662996|ref|YP_003859284.1| - 0.044 13.9 0.0 0.14 12.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|305662996|ref|YP_003859284.1| - 0.046 13.6 0.1 0.13 12.2 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|305662996|ref|YP_003859284.1| - 0.063 14.1 0.2 0.25 12.1 0.0 2.3 2 1 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|305662996|ref|YP_003859284.1| - 0.081 12.4 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DnaB_C PF03796.10 gi|305662996|ref|YP_003859284.1| - 0.088 11.6 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain ArgK PF03308.11 gi|305662996|ref|YP_003859284.1| - 0.12 11.1 0.0 0.25 10.0 0.0 1.4 1 0 0 1 1 1 0 ArgK protein NACHT PF05729.7 gi|305662996|ref|YP_003859284.1| - 0.13 11.9 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain GTP_EFTU PF00009.22 gi|305662996|ref|YP_003859284.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain RNA_helicase PF00910.17 gi|305662996|ref|YP_003859284.1| - 0.13 12.4 0.1 0.69 10.1 0.0 2.2 2 0 0 2 2 2 0 RNA helicase Cellulase PF00150.13 gi|305662997|ref|YP_003859285.1| - 9.5e-42 143.1 0.0 1.2e-41 142.7 0.0 1.1 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Myb_DNA-bind_6 PF13921.1 gi|305662997|ref|YP_003859285.1| - 0.081 13.0 0.3 9.9 6.3 0.0 2.9 3 0 0 3 3 3 0 Myb-like DNA-binding domain Fumerase PF05681.9 gi|305662998|ref|YP_003859286.1| - 1.3e-73 247.4 0.0 1.5e-73 247.2 0.0 1.0 1 0 0 1 1 1 1 Fumarate hydratase (Fumerase) Fumerase_C PF05683.7 gi|305662999|ref|YP_003859287.1| - 1.4e-51 174.5 0.0 1.8e-51 174.2 0.0 1.0 1 0 0 1 1 1 1 Fumarase C-terminus Pyr_redox PF00070.22 gi|305662999|ref|YP_003859287.1| - 0.075 13.4 0.1 0.19 12.1 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Acylphosphatase PF00708.13 gi|305663000|ref|YP_003859288.1| - 2.2e-24 85.3 0.0 2.3e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|305663000|ref|YP_003859288.1| - 0.0044 16.6 0.0 0.0045 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1115) SSF PF00474.12 gi|305663001|ref|YP_003859289.1| - 2.6e-28 98.8 30.1 4.2e-28 98.1 20.9 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family MARVEL PF01284.18 gi|305663002|ref|YP_003859290.1| - 0.009 15.8 3.2 0.01 15.6 2.2 1.0 1 0 0 1 1 1 1 Membrane-associating domain DUF3529 PF12046.3 gi|305663002|ref|YP_003859290.1| - 0.02 13.9 1.8 0.024 13.6 1.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) GATase PF00117.23 gi|305663003|ref|YP_003859291.1| - 1.3e-36 125.9 0.0 1.8e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GMP_synt_C PF00958.17 gi|305663003|ref|YP_003859291.1| - 2.9e-33 113.4 0.1 3e-32 110.1 0.0 2.3 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|305663003|ref|YP_003859291.1| - 1.9e-11 43.3 0.1 1.9e-07 30.2 0.0 2.3 2 0 0 2 2 2 2 NAD synthase Peptidase_C26 PF07722.8 gi|305663003|ref|YP_003859291.1| - 5.5e-08 32.5 0.0 1.8e-07 30.7 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 ATP_bind_3 PF01171.15 gi|305663003|ref|YP_003859291.1| - 0.00014 21.3 0.0 0.00021 20.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.8 gi|305663003|ref|YP_003859291.1| - 0.0009 18.5 0.0 0.0052 16.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|305663003|ref|YP_003859291.1| - 0.0038 15.8 0.0 0.018 13.6 0.0 1.8 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|305663003|ref|YP_003859291.1| - 0.0082 15.6 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|305663003|ref|YP_003859291.1| - 0.026 14.0 0.0 0.051 13.0 0.0 1.5 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) CitMHS PF03600.11 gi|305663004|ref|YP_003859292.1| - 1.3e-39 135.7 34.3 1.9e-39 135.2 23.8 1.3 1 0 0 1 1 1 1 Citrate transporter ArsB PF02040.10 gi|305663004|ref|YP_003859292.1| - 2e-12 46.8 38.2 2.6e-12 46.4 26.5 1.0 1 0 0 1 1 1 1 Arsenical pump membrane protein DctM PF06808.7 gi|305663004|ref|YP_003859292.1| - 0.0094 14.5 30.5 0.019 13.5 7.2 2.3 1 1 1 2 2 2 2 DctM-like transporters Wzt_C PF14524.1 gi|305663004|ref|YP_003859292.1| - 0.068 12.8 0.0 5.1 6.7 0.0 2.4 1 1 1 2 2 2 0 Wzt C-terminal domain Peptidase_U57 PF05582.7 gi|305663004|ref|YP_003859292.1| - 0.16 10.9 0.4 0.23 10.3 0.3 1.1 1 0 0 1 1 1 0 YabG peptidase U57 Wzz PF02706.10 gi|305663004|ref|YP_003859292.1| - 0.34 10.7 1.6 0.87 9.4 0.0 2.4 2 0 0 2 2 2 0 Chain length determinant protein PTPS PF01242.14 gi|305663005|ref|YP_003859293.1| - 1.2e-27 96.0 0.0 1.3e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Fer4_14 PF13394.1 gi|305663006|ref|YP_003859294.1| - 3.6e-20 72.1 0.0 5.3e-20 71.6 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|305663006|ref|YP_003859294.1| - 3.4e-11 43.4 0.0 4.8e-11 42.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Radical_SAM PF04055.16 gi|305663006|ref|YP_003859294.1| - 4.9e-09 36.5 0.1 8.5e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily QueC PF06508.8 gi|305663007|ref|YP_003859295.1| - 6.8e-39 133.3 0.0 1.1e-38 132.6 0.0 1.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|305663007|ref|YP_003859295.1| - 0.0038 16.6 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) Tautomerase PF01361.16 gi|305663010|ref|YP_003859298.1| - 2.8e-14 52.4 0.1 3.3e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|305663010|ref|YP_003859298.1| - 1.2e-09 38.0 0.0 1.3e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|305663010|ref|YP_003859298.1| - 3.9e-06 26.9 0.0 4.5e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 Putative oxalocrotonate tautomerase enzyme Methyltransf_26 PF13659.1 gi|305663012|ref|YP_003859300.1| - 2.7e-12 46.7 0.0 4.8e-12 45.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Spermine_synth PF01564.12 gi|305663012|ref|YP_003859300.1| - 1.9e-07 30.2 0.0 2.4e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Ubie_methyltran PF01209.13 gi|305663012|ref|YP_003859300.1| - 9.5e-07 28.1 0.0 2.1e-05 23.7 0.0 2.4 2 1 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|305663012|ref|YP_003859300.1| - 1.2e-06 29.0 0.0 2e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|305663012|ref|YP_003859300.1| - 1e-05 24.8 0.0 1.4e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.9 gi|305663012|ref|YP_003859300.1| - 1.1e-05 24.8 0.0 1.4e-05 24.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_30 PF05430.6 gi|305663012|ref|YP_003859300.1| - 6.2e-05 22.6 0.0 0.00024 20.7 0.0 1.8 2 0 0 2 2 2 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.6 gi|305663012|ref|YP_003859300.1| - 0.00018 20.3 0.0 0.00025 19.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_11 PF08241.7 gi|305663012|ref|YP_003859300.1| - 0.00036 20.9 0.0 0.0012 19.3 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663012|ref|YP_003859300.1| - 0.00039 20.0 0.0 0.00063 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|305663012|ref|YP_003859300.1| - 0.00044 19.6 0.0 0.00066 19.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PCMT PF01135.14 gi|305663012|ref|YP_003859300.1| - 0.021 14.3 0.0 0.033 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_24 PF13578.1 gi|305663012|ref|YP_003859300.1| - 0.034 14.9 0.0 0.069 13.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.11 gi|305663012|ref|YP_003859300.1| - 0.048 13.2 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein N6_Mtase PF02384.11 gi|305663012|ref|YP_003859300.1| - 0.072 12.1 0.0 0.096 11.7 0.0 1.1 1 0 0 1 1 1 0 N-6 DNA Methylase PmbA_TldD PF01523.11 gi|305663013|ref|YP_003859301.1| - 1.9e-50 171.8 0.3 2.4e-50 171.4 0.2 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.11 gi|305663014|ref|YP_003859302.1| - 2.2e-65 220.8 2.6 2.9e-65 220.4 1.8 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF424 PF04242.8 gi|305663015|ref|YP_003859303.1| - 0.024 14.6 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF424) F420_oxidored PF03807.12 gi|305663016|ref|YP_003859304.1| - 5.1e-18 65.2 1.3 8e-18 64.6 0.4 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent P5CR_dimer PF14748.1 gi|305663016|ref|YP_003859304.1| - 2.4e-16 59.6 0.0 3.7e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation NAD_binding_2 PF03446.10 gi|305663016|ref|YP_003859304.1| - 1.4e-09 38.0 0.3 2.6e-09 37.1 0.2 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|305663016|ref|YP_003859304.1| - 0.0014 17.6 0.9 0.0051 15.7 0.1 1.9 2 0 0 2 2 2 1 Prephenate dehydrogenase TrkA_N PF02254.13 gi|305663016|ref|YP_003859304.1| - 0.0034 17.3 0.2 0.016 15.1 0.0 2.2 2 1 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|305663016|ref|YP_003859304.1| - 0.0052 15.9 0.1 0.0084 15.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Rossmann-like PF10727.4 gi|305663016|ref|YP_003859304.1| - 0.022 14.4 0.1 0.049 13.3 0.1 1.6 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|305663016|ref|YP_003859304.1| - 0.029 14.0 0.7 0.066 12.8 0.1 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|305663016|ref|YP_003859304.1| - 0.12 12.1 2.9 0.72 9.5 0.8 2.5 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DapB_N PF01113.15 gi|305663016|ref|YP_003859304.1| - 0.71 9.8 2.5 1.7 8.5 1.8 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus MFS_1 PF07690.11 gi|305663018|ref|YP_003859306.1| - 4.3e-22 78.2 47.3 2.9e-13 49.2 9.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|305663018|ref|YP_003859306.1| - 1.9e-07 29.8 34.4 0.0012 17.2 1.6 3.1 1 1 2 3 3 3 3 MFS/sugar transport protein DUF3733 PF12534.3 gi|305663018|ref|YP_003859306.1| - 5 6.4 6.7 4.2 6.7 0.0 2.9 3 0 0 3 3 3 0 Leucine-rich repeat containing protein 8 DUF457 PF04307.9 gi|305663019|ref|YP_003859307.1| - 1.1e-12 47.6 11.8 2e-12 46.7 8.2 1.5 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF1129 PF06570.6 gi|305663019|ref|YP_003859307.1| - 0.23 10.7 3.2 0.38 10.0 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF1286 PF06939.6 gi|305663019|ref|YP_003859307.1| - 0.72 10.0 8.8 0.079 13.1 3.1 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1286) MoaC PF01967.16 gi|305663020|ref|YP_003859308.1| - 3.1e-43 146.7 1.2 3.5e-43 146.5 0.8 1.0 1 0 0 1 1 1 1 MoaC family SHR3_chaperone PF08229.6 gi|305663023|ref|YP_003859311.1| - 0.012 14.6 2.9 0.012 14.6 2.0 1.6 2 0 0 2 2 2 0 ER membrane protein SH3 DUF3262 PF11660.3 gi|305663023|ref|YP_003859311.1| - 0.032 14.3 1.2 0.032 14.3 0.9 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF2976 PF11190.3 gi|305663023|ref|YP_003859311.1| - 0.058 12.9 1.2 0.22 11.0 0.7 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2976) HTH_45 PF14947.1 gi|305663024|ref|YP_003859312.1| - 1.6e-17 63.0 0.6 1.8e-17 62.8 0.4 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|305663024|ref|YP_003859312.1| - 0.0009 19.3 0.1 0.0013 18.7 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator TrmB PF01978.14 gi|305663024|ref|YP_003859312.1| - 0.00096 18.8 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|305663024|ref|YP_003859312.1| - 0.0018 17.6 0.5 0.0018 17.6 0.3 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF4364 PF14277.1 gi|305663024|ref|YP_003859312.1| - 0.004 16.7 0.0 0.0042 16.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) RNA_pol_Rpc34 PF05158.7 gi|305663024|ref|YP_003859312.1| - 0.008 15.4 0.3 0.015 14.5 0.0 1.5 1 1 1 2 2 2 1 RNA polymerase Rpc34 subunit MarR_2 PF12802.2 gi|305663024|ref|YP_003859312.1| - 0.014 15.0 0.0 0.023 14.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|305663024|ref|YP_003859312.1| - 0.016 15.4 0.1 0.025 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF505 PF04458.7 gi|305663024|ref|YP_003859312.1| - 0.018 13.2 0.1 0.018 13.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF2250 PF10007.4 gi|305663024|ref|YP_003859312.1| - 0.018 14.9 0.2 0.034 14.0 0.1 1.5 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) BOP1NT PF08145.7 gi|305663024|ref|YP_003859312.1| - 0.042 13.5 0.0 0.049 13.3 0.0 1.1 1 0 0 1 1 1 0 BOP1NT (NUC169) domain AAA_assoc_C PF09821.4 gi|305663024|ref|YP_003859312.1| - 0.069 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 C-terminal AAA-associated domain Ftsk_gamma PF09397.5 gi|305663024|ref|YP_003859312.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Ftsk gamma domain HxlR PF01638.12 gi|305663024|ref|YP_003859312.1| - 0.13 11.9 0.2 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.1 gi|305663024|ref|YP_003859312.1| - 0.14 12.0 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Sulfolobus_pRN PF05584.6 gi|305663024|ref|YP_003859312.1| - 0.15 12.0 1.1 0.19 11.7 0.2 1.5 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Peripla_BP_2 PF01497.13 gi|305663026|ref|YP_003859314.1| - 8e-26 90.6 0.0 9.8e-26 90.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_2 PF01497.13 gi|305663027|ref|YP_003859315.1| - 2.1e-44 151.4 0.0 2.9e-44 150.9 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF3186 PF11382.3 gi|305663027|ref|YP_003859315.1| - 0.024 13.7 0.2 0.024 13.7 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) FecCD PF01032.13 gi|305663028|ref|YP_003859316.1| - 1.9e-68 230.6 38.6 2.4e-68 230.2 26.7 1.0 1 0 0 1 1 1 1 FecCD transport family DUF373 PF04123.8 gi|305663028|ref|YP_003859316.1| - 0.6 9.0 23.9 0.017 14.1 11.4 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF373) DUF4538 PF15061.1 gi|305663028|ref|YP_003859316.1| - 4.5 6.6 5.5 19 4.6 0.6 3.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) ABC_tran PF00005.22 gi|305663029|ref|YP_003859317.1| - 3.3e-29 101.9 0.0 4.7e-29 101.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663029|ref|YP_003859317.1| - 2.8e-09 37.3 0.1 1.8e-05 24.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|305663029|ref|YP_003859317.1| - 4.7e-07 29.1 0.0 0.023 13.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|305663029|ref|YP_003859317.1| - 3.7e-05 24.5 0.3 7.9e-05 23.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663029|ref|YP_003859317.1| - 4.9e-05 23.3 0.1 0.00015 21.8 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|305663029|ref|YP_003859317.1| - 5.4e-05 22.6 0.0 9.5e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|305663029|ref|YP_003859317.1| - 6.9e-05 22.7 0.1 0.00052 19.9 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|305663029|ref|YP_003859317.1| - 8.2e-05 22.7 0.1 0.0011 19.0 0.1 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305663029|ref|YP_003859317.1| - 0.00012 21.3 0.1 0.011 14.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Arch_ATPase PF01637.13 gi|305663029|ref|YP_003859317.1| - 0.00015 21.5 0.0 0.00022 21.0 0.0 1.4 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|305663029|ref|YP_003859317.1| - 0.00033 20.3 0.4 0.00092 18.9 0.0 1.9 2 0 0 2 2 1 1 Part of AAA domain AAA PF00004.24 gi|305663029|ref|YP_003859317.1| - 0.00033 20.8 0.2 0.0062 16.7 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.7 gi|305663029|ref|YP_003859317.1| - 0.00057 19.0 0.0 0.0013 17.8 0.0 1.5 2 0 0 2 2 1 1 Zeta toxin AAA_23 PF13476.1 gi|305663029|ref|YP_003859317.1| - 0.00081 19.7 0.0 0.0012 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663029|ref|YP_003859317.1| - 0.015 15.6 0.5 0.14 12.4 0.3 2.3 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|305663029|ref|YP_003859317.1| - 0.018 14.1 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|305663029|ref|YP_003859317.1| - 0.02 14.7 0.0 0.042 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663029|ref|YP_003859317.1| - 0.026 14.1 0.0 0.053 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305663029|ref|YP_003859317.1| - 0.026 13.9 0.1 0.06 12.7 0.0 1.6 1 1 0 2 2 2 0 AAA-like domain NACHT PF05729.7 gi|305663029|ref|YP_003859317.1| - 0.032 13.9 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain NTPase_1 PF03266.10 gi|305663029|ref|YP_003859317.1| - 0.036 13.7 0.1 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 NTPase MobB PF03205.9 gi|305663029|ref|YP_003859317.1| - 0.048 13.3 0.1 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|305663029|ref|YP_003859317.1| - 0.054 13.2 0.0 0.19 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AFG1_ATPase PF03969.11 gi|305663029|ref|YP_003859317.1| - 0.055 12.2 0.1 1.2 7.8 0.0 2.2 1 1 1 2 2 2 0 AFG1-like ATPase AAA_28 PF13521.1 gi|305663029|ref|YP_003859317.1| - 0.062 13.2 0.0 0.09 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|305663029|ref|YP_003859317.1| - 0.066 12.8 0.1 0.13 11.9 0.1 1.6 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 T2SE PF00437.15 gi|305663029|ref|YP_003859317.1| - 0.073 11.9 0.0 0.13 11.1 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|305663029|ref|YP_003859317.1| - 0.085 12.3 0.0 0.085 12.3 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_24 PF13479.1 gi|305663029|ref|YP_003859317.1| - 0.087 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|305663029|ref|YP_003859317.1| - 0.1 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_13 PF13166.1 gi|305663029|ref|YP_003859317.1| - 0.1 11.0 0.0 0.38 9.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain PIF1 PF05970.9 gi|305663029|ref|YP_003859317.1| - 0.1 11.4 0.0 0.18 10.6 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase IstB_IS21 PF01695.12 gi|305663029|ref|YP_003859317.1| - 0.13 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.10 gi|305663029|ref|YP_003859317.1| - 0.14 10.8 0.0 0.15 10.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein cobW PF02492.14 gi|305663029|ref|YP_003859317.1| - 0.15 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.1 gi|305663029|ref|YP_003859317.1| - 0.17 11.2 0.2 0.38 10.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain Radical_SAM PF04055.16 gi|305663030|ref|YP_003859318.1| - 1.4e-16 61.1 0.1 2.4e-16 60.3 0.0 1.4 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|305663030|ref|YP_003859318.1| - 0.00011 22.1 0.0 0.00035 20.5 0.0 1.8 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|305663030|ref|YP_003859318.1| - 0.00023 21.3 0.0 0.00088 19.3 0.0 2.0 1 1 1 2 2 2 1 4Fe-4S single cluster domain DUF4398 PF14346.1 gi|305663034|ref|YP_003859322.1| - 0.016 15.2 2.6 0.018 15.0 1.1 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4398) ABC_membrane_3 PF13748.1 gi|305663034|ref|YP_003859322.1| - 0.14 11.1 0.0 0.41 9.6 0.0 1.7 2 0 0 2 2 2 0 ABC transporter transmembrane region MtrG PF04210.8 gi|305663034|ref|YP_003859322.1| - 1.8 8.2 4.3 0.84 9.3 0.7 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G TrmB PF01978.14 gi|305663035|ref|YP_003859323.1| - 1.4e-05 24.6 0.2 3.5e-05 23.4 0.1 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|305663035|ref|YP_003859323.1| - 0.0003 20.8 0.1 0.00049 20.1 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor PaaX PF07848.7 gi|305663035|ref|YP_003859323.1| - 0.00076 19.4 0.3 0.0019 18.1 0.2 1.7 1 0 0 1 1 1 1 PaaX-like protein HTH_27 PF13463.1 gi|305663035|ref|YP_003859323.1| - 0.0025 18.0 0.8 0.0043 17.3 0.5 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|305663035|ref|YP_003859323.1| - 0.058 12.8 0.2 0.13 11.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PadR PF03551.9 gi|305663035|ref|YP_003859323.1| - 0.067 12.9 0.4 0.15 11.8 0.3 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|305663035|ref|YP_003859323.1| - 0.085 12.6 0.2 0.21 11.4 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.17 gi|305663035|ref|YP_003859323.1| - 0.15 11.8 0.4 0.35 10.6 0.3 1.6 1 1 0 1 1 1 0 MarR family DUF2479 PF10651.4 gi|305663037|ref|YP_003859325.1| - 0.049 13.1 0.4 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2479) RAMPs PF03787.10 gi|305663038|ref|YP_003859326.1| - 4e-09 36.6 0.1 7.7e-09 35.7 0.1 1.4 1 0 0 1 1 1 1 RAMP superfamily Herpes_UL79 PF03049.9 gi|305663040|ref|YP_003859328.1| - 0.064 12.3 0.0 0.068 12.2 0.0 1.1 1 0 0 1 1 1 0 UL79 family RAMPs PF03787.10 gi|305663041|ref|YP_003859329.1| - 1e-18 68.0 0.6 5.1e-18 65.7 0.4 2.2 1 1 0 1 1 1 1 RAMP superfamily DUF3310 PF11753.3 gi|305663042|ref|YP_003859330.1| - 0.062 13.2 0.4 2.5 8.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknwon function (DUF3310) Lactonase PF10282.4 gi|305663042|ref|YP_003859330.1| - 0.12 11.4 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 Lactonase, 7-bladed beta-propeller RAMPs PF03787.10 gi|305663043|ref|YP_003859331.1| - 6.8e-22 78.3 0.0 3.6e-19 69.4 0.0 2.5 1 1 1 2 2 2 2 RAMP superfamily DUF310 PF03750.8 gi|305663043|ref|YP_003859331.1| - 0.1 12.7 0.2 0.24 11.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF310) MutS_II PF05188.12 gi|305663043|ref|YP_003859331.1| - 0.15 12.1 0.1 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 MutS domain II DUF1140 PF06600.6 gi|305663043|ref|YP_003859331.1| - 0.29 11.2 3.3 0.17 12.0 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1140) DUF2276 PF10040.4 gi|305663048|ref|YP_003859336.1| - 1.1e-16 61.1 0.0 1.5e-16 60.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) DUF911 PF06023.7 gi|305663049|ref|YP_003859337.1| - 1.2e-54 185.5 0.0 2e-54 184.7 0.0 1.3 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF911) Baculo_PEP_C PF04513.7 gi|305663051|ref|YP_003859339.1| - 1.8e-07 31.0 0.0 4.8e-05 23.1 0.0 1.8 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.13 gi|305663051|ref|YP_003859339.1| - 7.5e-06 25.5 1.0 1.2e-05 24.8 0.7 1.4 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|305663051|ref|YP_003859339.1| - 2.3e-05 24.0 1.2 2.3e-05 24.0 0.8 1.9 2 0 0 2 2 2 1 IncA protein RmuC PF02646.11 gi|305663051|ref|YP_003859339.1| - 4.8e-05 22.3 0.1 0.0026 16.6 0.0 2.2 1 1 1 2 2 2 1 RmuC family Hemagglutinin PF00509.13 gi|305663051|ref|YP_003859339.1| - 0.00017 19.9 0.6 0.017 13.2 0.0 2.3 1 1 1 2 2 2 1 Haemagglutinin Fib_alpha PF08702.5 gi|305663051|ref|YP_003859339.1| - 0.00041 20.5 0.4 0.00091 19.3 0.0 1.6 2 0 0 2 2 2 1 Fibrinogen alpha/beta chain family FlaC_arch PF05377.6 gi|305663051|ref|YP_003859339.1| - 0.00053 19.8 1.8 0.01 15.6 0.1 3.0 3 1 0 3 3 2 1 Flagella accessory protein C (FlaC) HSBP1 PF06825.7 gi|305663051|ref|YP_003859339.1| - 0.00054 19.4 5.1 0.0021 17.5 0.9 2.8 1 1 1 2 2 2 1 Heat shock factor binding protein 1 DUF1664 PF07889.7 gi|305663051|ref|YP_003859339.1| - 0.00059 19.6 0.4 0.054 13.3 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) Sec3_C PF09763.4 gi|305663051|ref|YP_003859339.1| - 0.0011 17.2 0.1 0.0016 16.7 0.1 1.2 1 0 0 1 1 1 1 Exocyst complex component Sec3 Phasin PF05597.6 gi|305663051|ref|YP_003859339.1| - 0.0016 18.1 1.2 0.0016 18.1 0.9 2.2 2 0 0 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) COG2 PF06148.6 gi|305663051|ref|YP_003859339.1| - 0.0017 18.2 1.0 0.89 9.4 0.2 2.5 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.7 gi|305663051|ref|YP_003859339.1| - 0.0033 16.3 0.3 0.035 12.9 0.0 2.2 2 1 1 3 3 3 1 Autophagy protein Apg17 Transcrip_act PF04949.8 gi|305663051|ref|YP_003859339.1| - 0.0035 17.0 10.5 0.0036 16.9 6.1 2.0 1 1 0 1 1 1 1 Transcriptional activator Phage_GPO PF05929.6 gi|305663051|ref|YP_003859339.1| - 0.012 14.8 1.0 0.028 13.6 0.1 2.0 2 1 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase Tropomyosin PF00261.15 gi|305663051|ref|YP_003859339.1| - 0.014 14.5 0.8 0.014 14.5 0.5 3.2 2 1 1 3 3 2 0 Tropomyosin AAA_13 PF13166.1 gi|305663051|ref|YP_003859339.1| - 0.016 13.6 0.3 0.048 12.1 0.0 1.7 1 1 0 2 2 2 0 AAA domain NPV_P10 PF05531.7 gi|305663051|ref|YP_003859339.1| - 0.017 15.3 0.0 0.41 10.9 0.0 2.5 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein TMV_coat PF00721.16 gi|305663051|ref|YP_003859339.1| - 0.046 13.6 0.0 0.083 12.8 0.0 1.4 1 0 0 1 1 1 0 Virus coat protein (TMV like) RPW8 PF05659.6 gi|305663051|ref|YP_003859339.1| - 0.047 13.2 2.3 0.67 9.4 0.3 2.4 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Fzo_mitofusin PF04799.8 gi|305663051|ref|YP_003859339.1| - 0.05 12.9 0.0 0.05 12.9 0.0 1.9 2 1 0 2 2 1 0 fzo-like conserved region V_ATPase_I PF01496.14 gi|305663051|ref|YP_003859339.1| - 0.05 11.4 3.2 0.069 11.0 2.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Matrilin_ccoil PF10393.4 gi|305663051|ref|YP_003859339.1| - 0.061 12.7 2.6 8.9 5.7 0.0 3.1 2 1 1 4 4 4 0 Trimeric coiled-coil oligomerisation domain of matrilin Prefoldin_2 PF01920.15 gi|305663051|ref|YP_003859339.1| - 0.062 13.0 0.0 0.062 13.0 0.0 2.9 3 0 0 3 3 2 0 Prefoldin subunit PilJ PF13675.1 gi|305663051|ref|YP_003859339.1| - 0.085 13.1 0.2 0.51 10.6 0.0 2.3 2 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Nup54 PF13874.1 gi|305663051|ref|YP_003859339.1| - 0.1 12.2 5.7 1.4 8.6 0.4 2.5 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 Surfac_D-trimer PF09006.6 gi|305663051|ref|YP_003859339.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.6 1 0 0 1 1 1 0 Lung surfactant protein D coiled-coil trimerisation SR-25 PF10500.4 gi|305663051|ref|YP_003859339.1| - 0.21 11.0 0.0 0.21 11.0 0.0 2.2 2 0 0 2 2 1 0 Nuclear RNA-splicing-associated protein DUF4164 PF13747.1 gi|305663051|ref|YP_003859339.1| - 0.3 11.2 12.9 0.086 12.9 5.6 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) DUF342 PF03961.8 gi|305663051|ref|YP_003859339.1| - 0.36 9.1 5.4 0.042 12.2 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF342) MtrG PF04210.8 gi|305663051|ref|YP_003859339.1| - 0.41 10.3 17.0 7 6.4 0.3 4.7 2 1 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF4351 PF14261.1 gi|305663051|ref|YP_003859339.1| - 0.71 9.7 5.9 2.4 8.0 0.2 4.2 2 1 2 4 4 3 0 Domain of unknown function (DUF4351) DUF4375 PF14300.1 gi|305663051|ref|YP_003859339.1| - 1.9 8.4 7.0 0.94 9.4 0.5 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4375) Occludin_ELL PF07303.8 gi|305663051|ref|YP_003859339.1| - 2.1 9.1 9.8 5.4 7.7 0.7 3.6 1 1 2 3 3 3 0 Occludin homology domain CorA PF01544.13 gi|305663051|ref|YP_003859339.1| - 2.3 7.1 5.6 0.35 9.8 1.4 1.6 2 0 0 2 2 1 0 CorA-like Mg2+ transporter protein TSKS PF15358.1 gi|305663051|ref|YP_003859339.1| - 2.9 5.9 7.4 0.29 9.2 1.8 1.6 2 0 0 2 2 2 0 Testis-specific serine kinase substrate CCDC-167 PF15188.1 gi|305663051|ref|YP_003859339.1| - 3 7.8 11.3 1.4 8.9 3.4 3.1 2 1 0 2 2 2 0 Coiled-coil domain-containing protein 167 Vac_Fusion PF02346.11 gi|305663051|ref|YP_003859339.1| - 9.1 5.7 14.3 8.7 5.8 3.1 3.7 2 1 1 3 3 3 0 Chordopoxvirus fusion protein KaiC PF06745.8 gi|305663052|ref|YP_003859340.1| - 1.5e-28 99.4 0.0 2.4e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|305663052|ref|YP_003859340.1| - 8.3e-08 31.8 0.0 1.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|305663052|ref|YP_003859340.1| - 0.0001 22.0 0.0 0.00023 20.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|305663052|ref|YP_003859340.1| - 0.00024 21.2 0.0 0.00074 19.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|305663052|ref|YP_003859340.1| - 0.0012 18.7 0.0 0.0025 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305663052|ref|YP_003859340.1| - 0.005 17.6 0.2 0.022 15.5 0.0 2.3 2 2 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|305663052|ref|YP_003859340.1| - 0.008 15.6 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_10 PF12846.2 gi|305663052|ref|YP_003859340.1| - 0.0098 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|305663052|ref|YP_003859340.1| - 0.014 15.6 0.0 0.03 14.5 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|305663052|ref|YP_003859340.1| - 0.017 14.4 0.0 0.19 11.0 0.0 2.6 2 1 1 3 3 3 0 Thymidylate kinase AAA_23 PF13476.1 gi|305663052|ref|YP_003859340.1| - 0.019 15.3 0.0 0.037 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain GvpD PF07088.6 gi|305663052|ref|YP_003859340.1| - 0.019 13.3 0.0 0.063 11.5 0.0 1.7 1 1 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.1 gi|305663052|ref|YP_003859340.1| - 0.02 14.8 0.0 0.046 13.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain DUF2075 PF09848.4 gi|305663052|ref|YP_003859340.1| - 0.024 13.6 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|305663052|ref|YP_003859340.1| - 0.038 13.6 0.0 0.081 12.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_18 PF13238.1 gi|305663052|ref|YP_003859340.1| - 0.06 13.6 0.0 0.19 12.0 0.0 2.0 1 1 0 1 1 1 0 AAA domain DUF1560 PF07597.6 gi|305663052|ref|YP_003859340.1| - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1560) AAA_5 PF07728.9 gi|305663052|ref|YP_003859340.1| - 0.064 12.9 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|305663052|ref|YP_003859340.1| - 0.099 12.5 0.0 0.27 11.1 0.0 1.8 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.17 gi|305663052|ref|YP_003859340.1| - 0.13 11.1 0.0 0.39 9.5 0.0 1.8 2 0 0 2 2 2 0 NB-ARC domain cobW PF02492.14 gi|305663052|ref|YP_003859340.1| - 0.15 11.5 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Radical_SAM PF04055.16 gi|305663053|ref|YP_003859341.1| - 7.9e-06 26.1 3.0 0.00034 20.8 0.8 3.5 2 1 1 3 3 3 1 Radical SAM superfamily DUF1848 PF08902.6 gi|305663053|ref|YP_003859341.1| - 1.6 8.1 5.4 3.2 7.1 3.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1848) PTS_2-RNA PF01885.11 gi|305663054|ref|YP_003859342.1| - 1.7e-44 151.3 0.0 2.2e-44 150.9 0.0 1.1 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family Antitoxin-MazE PF04014.13 gi|305663055|ref|YP_003859343.1| - 9.9e-09 34.7 0.5 9.9e-09 34.7 0.4 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE DUF3841 PF12952.2 gi|305663055|ref|YP_003859343.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3841) UFD1 PF03152.9 gi|305663055|ref|YP_003859343.1| - 0.12 11.4 0.0 0.16 11.1 0.0 1.2 1 0 0 1 1 1 0 Ubiquitin fusion degradation protein UFD1 OrfB_Zn_ribbon PF07282.6 gi|305663057|ref|YP_003859345.1| - 5.2e-19 67.6 0.9 1.1e-18 66.6 0.1 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|305663057|ref|YP_003859345.1| - 7.1e-08 32.1 2.9 1.1e-07 31.4 2.0 1.3 1 0 0 1 1 1 1 Probable transposase PHF5 PF03660.9 gi|305663057|ref|YP_003859345.1| - 0.054 13.5 0.3 0.099 12.7 0.2 1.3 1 0 0 1 1 1 0 PHF5-like protein TENA_THI-4 PF03070.11 gi|305663057|ref|YP_003859345.1| - 0.076 12.7 0.1 1.5 8.4 0.1 2.1 1 1 1 2 2 2 0 TENA/THI-4/PQQC family MFS_1 PF07690.11 gi|305663059|ref|YP_003859347.1| - 8.8e-48 162.8 89.1 1.3e-38 132.6 41.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|305663059|ref|YP_003859347.1| - 3.2e-10 39.2 37.1 7.9e-09 34.6 10.7 2.7 2 1 0 2 2 2 2 Sugar (and other) transporter OATP PF03137.15 gi|305663059|ref|YP_003859347.1| - 0.012 13.7 0.9 0.012 13.7 0.6 3.7 3 1 1 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family DUF697 PF05128.7 gi|305663059|ref|YP_003859347.1| - 7.6 6.0 9.8 5.7 6.4 0.5 3.0 2 1 0 3 3 3 0 Domain of unknown function (DUF697) VWA PF00092.23 gi|305663060|ref|YP_003859348.1| - 3e-16 59.6 0.0 4.9e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.1 gi|305663060|ref|YP_003859348.1| - 5.9e-12 46.0 0.0 8.8e-12 45.4 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|305663060|ref|YP_003859348.1| - 4.8e-08 32.8 0.0 1e-07 31.8 0.0 1.5 2 0 0 2 2 2 1 von Willebrand factor type A domain FHA PF00498.21 gi|305663061|ref|YP_003859349.1| - 4.7e-24 84.2 0.0 6.6e-24 83.8 0.0 1.2 1 0 0 1 1 1 1 FHA domain Pkinase PF00069.20 gi|305663062|ref|YP_003859350.1| - 1.6e-20 73.3 0.0 4.1e-20 72.0 0.0 1.7 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|305663062|ref|YP_003859350.1| - 1.1e-10 41.0 0.0 5.6e-10 38.7 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|305663062|ref|YP_003859350.1| - 0.021 13.9 0.0 0.036 13.1 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family DUF2363 PF10155.4 gi|305663062|ref|YP_003859350.1| - 0.058 13.3 0.3 0.32 10.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2363) Glyco_hydro_12 PF01670.11 gi|305663063|ref|YP_003859351.1| - 1.5e-17 63.8 0.0 2.4e-17 63.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 Rifin_STEVOR PF02009.11 gi|305663063|ref|YP_003859351.1| - 0.19 11.3 2.5 0.27 10.8 1.7 1.3 1 0 0 1 1 1 0 Rifin/stevor family ABC_tran PF00005.22 gi|305663064|ref|YP_003859352.1| - 2e-34 118.8 0.0 2.6e-34 118.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663064|ref|YP_003859352.1| - 8.1e-18 65.3 0.0 1.5e-10 41.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663064|ref|YP_003859352.1| - 1.2e-10 41.0 0.3 1.7e-06 27.4 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|305663064|ref|YP_003859352.1| - 1.4e-10 40.8 0.1 3.8e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|305663064|ref|YP_003859352.1| - 1.3e-05 24.8 0.1 0.0025 17.2 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain SbcCD_C PF13558.1 gi|305663064|ref|YP_003859352.1| - 0.00046 20.0 0.0 0.0063 16.3 0.0 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|305663064|ref|YP_003859352.1| - 0.0005 20.1 1.1 0.0011 18.9 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|305663064|ref|YP_003859352.1| - 0.0011 18.1 0.1 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|305663064|ref|YP_003859352.1| - 0.0016 18.8 0.1 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305663064|ref|YP_003859352.1| - 0.0018 18.4 0.7 0.068 13.3 0.5 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|305663064|ref|YP_003859352.1| - 0.0019 18.3 0.9 0.013 15.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305663064|ref|YP_003859352.1| - 0.0023 18.7 0.8 0.0049 17.6 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305663064|ref|YP_003859352.1| - 0.0024 17.3 0.0 0.0044 16.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|305663064|ref|YP_003859352.1| - 0.0028 17.0 0.0 0.0058 16.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|305663064|ref|YP_003859352.1| - 0.0076 15.8 0.2 0.033 13.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|305663064|ref|YP_003859352.1| - 0.013 15.8 2.5 0.12 12.6 0.6 2.6 1 1 2 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|305663064|ref|YP_003859352.1| - 0.015 15.0 0.1 0.042 13.6 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|305663064|ref|YP_003859352.1| - 0.017 14.8 0.1 0.033 13.9 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|305663064|ref|YP_003859352.1| - 0.019 14.3 0.1 0.039 13.3 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ABC_ATPase PF09818.4 gi|305663064|ref|YP_003859352.1| - 0.024 13.2 0.1 0.21 10.0 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Abhydrolase_8 PF06259.7 gi|305663064|ref|YP_003859352.1| - 0.03 13.8 0.0 2.1 7.8 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase AAA_33 PF13671.1 gi|305663064|ref|YP_003859352.1| - 0.032 14.1 0.1 0.15 11.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305663064|ref|YP_003859352.1| - 0.04 13.5 0.3 0.11 12.1 0.1 1.8 1 1 1 2 2 2 0 NACHT domain T2SE PF00437.15 gi|305663064|ref|YP_003859352.1| - 0.046 12.6 0.0 0.083 11.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|305663064|ref|YP_003859352.1| - 0.062 12.9 0.3 0.12 12.0 0.2 1.9 1 1 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|305663064|ref|YP_003859352.1| - 0.071 13.0 0.0 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|305663064|ref|YP_003859352.1| - 0.08 12.5 0.1 0.17 11.4 0.1 1.5 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|305663064|ref|YP_003859352.1| - 0.08 12.4 0.0 0.15 11.5 0.0 1.5 1 1 0 1 1 1 0 DEAD/DEAH box helicase Peptidase_C80 PF11713.3 gi|305663064|ref|YP_003859352.1| - 0.093 12.5 0.0 6.7 6.4 0.0 2.2 2 0 0 2 2 2 0 Peptidase C80 family AAA_28 PF13521.1 gi|305663064|ref|YP_003859352.1| - 0.15 11.9 0.1 0.35 10.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain MacB_PCD PF12704.2 gi|305663065|ref|YP_003859353.1| - 9e-34 117.0 4.1 9e-34 117.0 2.9 2.5 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|305663065|ref|YP_003859353.1| - 4.2e-23 81.3 11.8 4.2e-23 81.3 8.2 2.7 2 0 0 2 2 2 1 FtsX-like permease family Flavodoxin_4 PF12682.2 gi|305663068|ref|YP_003859356.1| - 3.6e-10 39.4 0.2 4.5e-10 39.1 0.1 1.2 1 0 0 1 1 1 1 Flavodoxin FMN_red PF03358.10 gi|305663068|ref|YP_003859356.1| - 5.6e-07 29.1 0.0 8.1e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_5 PF12724.2 gi|305663068|ref|YP_003859356.1| - 3.4e-06 27.1 0.0 0.00054 19.9 0.0 2.6 2 1 0 2 2 2 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|305663068|ref|YP_003859356.1| - 0.00035 20.5 0.0 0.0011 18.9 0.0 1.7 2 0 0 2 2 2 1 Flavodoxin Flavodoxin_2 PF02525.12 gi|305663068|ref|YP_003859356.1| - 0.0014 18.2 0.0 0.0021 17.6 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_3 PF12641.2 gi|305663068|ref|YP_003859356.1| - 0.02 14.3 0.0 0.11 11.9 0.0 2.0 2 0 0 2 2 2 0 Flavodoxin domain Flavodoxin_NdrI PF07972.6 gi|305663068|ref|YP_003859356.1| - 0.095 12.6 0.1 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 NrdI Flavodoxin like FR47 PF08445.5 gi|305663069|ref|YP_003859357.1| - 2.1e-16 59.4 0.0 3.2e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_1 PF00583.19 gi|305663069|ref|YP_003859357.1| - 1.1e-13 51.0 0.3 2.4e-13 49.9 0.2 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|305663069|ref|YP_003859357.1| - 5.1e-07 29.8 0.0 9.4e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|305663069|ref|YP_003859357.1| - 3.8e-06 26.9 0.2 1.3e-05 25.3 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|305663069|ref|YP_003859357.1| - 0.00015 21.6 0.2 0.00033 20.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|305663069|ref|YP_003859357.1| - 0.0053 16.9 0.0 0.0085 16.2 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|305663069|ref|YP_003859357.1| - 0.0064 16.3 0.1 0.017 15.0 0.0 1.7 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|305663069|ref|YP_003859357.1| - 0.0066 16.3 0.2 0.015 15.1 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|305663069|ref|YP_003859357.1| - 0.0069 15.2 0.7 0.018 13.9 0.5 1.6 1 1 0 1 1 1 1 GNAT acetyltransferase Methyltransf_25 PF13649.1 gi|305663070|ref|YP_003859358.1| - 5.1e-10 39.6 0.0 1.1e-09 38.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663070|ref|YP_003859358.1| - 6.8e-08 32.2 0.0 9.3e-08 31.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305663070|ref|YP_003859358.1| - 2e-05 25.1 0.0 3.2e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305663070|ref|YP_003859358.1| - 0.0056 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.4 gi|305663070|ref|YP_003859358.1| - 0.024 14.0 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RPA PF10134.4 gi|305663070|ref|YP_003859358.1| - 0.085 12.1 0.2 0.13 11.5 0.1 1.2 1 0 0 1 1 1 0 Replication initiator protein A Ubie_methyltran PF01209.13 gi|305663070|ref|YP_003859358.1| - 0.11 11.5 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CcdA PF07362.7 gi|305663071|ref|YP_003859359.1| - 3.9e-07 29.8 0.3 5.1e-07 29.4 0.2 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|305663071|ref|YP_003859359.1| - 0.0018 18.1 1.4 0.0018 18.1 1.0 1.9 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|305663071|ref|YP_003859359.1| - 0.12 12.0 0.4 0.12 12.0 0.3 2.0 2 0 0 2 2 2 0 Ribbon-helix-helix domain Phage_Gp14 PF10666.4 gi|305663071|ref|YP_003859359.1| - 0.12 12.1 0.2 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 Phage protein Gp14 Thy1 PF02511.10 gi|305663072|ref|YP_003859360.1| - 2.4e-53 180.3 0.0 1.7e-52 177.5 0.0 1.9 1 1 1 2 2 2 1 Thymidylate synthase complementing protein Meth_synt_2 PF01717.13 gi|305663073|ref|YP_003859361.1| - 2.1e-94 316.1 0.0 2.4e-94 315.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|305663073|ref|YP_003859361.1| - 4.9e-23 81.8 0.1 1.9e-17 63.5 0.1 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Band_7 PF01145.20 gi|305663073|ref|YP_003859361.1| - 0.0024 17.8 0.0 0.23 11.3 0.1 2.9 2 1 0 2 2 2 1 SPFH domain / Band 7 family Glyco_hydro_61 PF03443.9 gi|305663073|ref|YP_003859361.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 61 Meth_synt_1 PF08267.7 gi|305663074|ref|YP_003859362.1| - 6.1e-35 120.9 0.0 6.4e-26 91.3 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|305663074|ref|YP_003859362.1| - 2.8e-13 49.5 0.0 4.7e-13 48.8 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DUF2204 PF09970.4 gi|305663075|ref|YP_003859363.1| - 0.0032 16.9 0.2 0.0054 16.2 0.1 1.7 1 1 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DUF1814 PF08843.6 gi|305663075|ref|YP_003859363.1| - 0.14 11.9 0.4 0.24 11.1 0.3 1.6 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF1814) Orbi_VP5 PF00901.12 gi|305663077|ref|YP_003859365.1| - 0.00057 18.2 5.0 0.00074 17.8 3.5 1.1 1 0 0 1 1 1 1 Orbivirus outer capsid protein VP5 Snapin_Pallidin PF14712.1 gi|305663077|ref|YP_003859365.1| - 0.0019 18.4 1.0 0.0019 18.4 0.7 2.3 2 1 0 2 2 2 1 Snapin/Pallidin RmuC PF02646.11 gi|305663077|ref|YP_003859365.1| - 0.0027 16.5 1.5 0.0092 14.8 0.4 2.0 2 1 0 2 2 2 1 RmuC family Occludin_ELL PF07303.8 gi|305663077|ref|YP_003859365.1| - 0.0034 18.0 4.2 0.36 11.5 0.4 2.4 1 1 1 2 2 2 2 Occludin homology domain Sec3_C PF09763.4 gi|305663077|ref|YP_003859365.1| - 0.0045 15.1 0.6 0.0068 14.5 0.4 1.2 1 0 0 1 1 1 1 Exocyst complex component Sec3 IncA PF04156.9 gi|305663077|ref|YP_003859365.1| - 0.013 15.0 4.5 0.013 15.0 3.1 1.7 2 0 0 2 2 2 0 IncA protein Hema_stalk PF08720.5 gi|305663077|ref|YP_003859365.1| - 0.03 13.8 1.7 0.057 12.9 1.1 1.6 1 0 0 1 1 1 0 Influenza C hemagglutinin stalk BLOC1_2 PF10046.4 gi|305663077|ref|YP_003859365.1| - 0.075 13.1 2.6 1.1 9.4 0.1 2.6 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AATF-Che1 PF13339.1 gi|305663077|ref|YP_003859365.1| - 0.081 13.0 0.9 0.14 12.2 0.3 1.6 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor IFT57 PF10498.4 gi|305663077|ref|YP_003859365.1| - 0.11 11.2 4.8 0.15 10.8 3.3 1.2 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 Vac_Fusion PF02346.11 gi|305663077|ref|YP_003859365.1| - 0.11 11.9 17.4 0.93 8.9 1.0 4.1 2 1 2 4 4 4 0 Chordopoxvirus fusion protein DUF1465 PF07323.7 gi|305663077|ref|YP_003859365.1| - 0.13 11.7 3.8 0.12 11.8 1.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1465) T2SF PF00482.18 gi|305663077|ref|YP_003859365.1| - 0.19 11.6 1.8 0.35 10.7 1.3 1.4 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein F HD_4 PF13328.1 gi|305663077|ref|YP_003859365.1| - 0.36 10.5 2.5 0.56 9.9 1.8 1.4 1 0 0 1 1 1 0 HD domain GrpE PF01025.14 gi|305663077|ref|YP_003859365.1| - 0.65 9.5 6.6 0.56 9.7 2.9 1.9 1 1 1 2 2 2 0 GrpE TMF_DNA_bd PF12329.3 gi|305663077|ref|YP_003859365.1| - 0.66 9.8 8.3 7 6.5 0.3 3.5 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding SlyX PF04102.7 gi|305663077|ref|YP_003859365.1| - 0.77 10.1 5.5 1.9 8.9 0.5 3.0 3 1 0 3 3 3 0 SlyX DUF1515 PF07439.6 gi|305663077|ref|YP_003859365.1| - 0.87 9.4 4.6 1.1 9.0 2.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) V_ATPase_I PF01496.14 gi|305663077|ref|YP_003859365.1| - 1.1 6.9 5.5 1.5 6.5 3.8 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF16 PF01519.11 gi|305663077|ref|YP_003859365.1| - 2 8.6 7.0 5.8 7.1 1.2 2.4 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF972 PF06156.8 gi|305663077|ref|YP_003859365.1| - 2.6 8.4 8.1 30 5.0 4.3 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF972) COG2 PF06148.6 gi|305663077|ref|YP_003859365.1| - 3.3 7.5 6.1 1.3 8.8 1.6 2.2 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 APG6 PF04111.7 gi|305663077|ref|YP_003859365.1| - 4.4 6.2 7.7 11 4.9 0.8 1.8 1 1 1 2 2 2 0 Autophagy protein Apg6 FlaC_arch PF05377.6 gi|305663077|ref|YP_003859365.1| - 8.6 6.3 10.8 1.2 9.0 0.7 3.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Arch_ATPase PF01637.13 gi|305663078|ref|YP_003859366.1| - 7.8e-54 182.8 0.3 7.8e-54 182.8 0.2 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|305663078|ref|YP_003859366.1| - 2.8e-05 24.2 0.0 7.7e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|305663078|ref|YP_003859366.1| - 0.00034 19.5 0.0 0.0016 17.3 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|305663078|ref|YP_003859366.1| - 0.00043 20.3 0.0 0.00073 19.5 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|305663078|ref|YP_003859366.1| - 0.00068 19.8 0.0 0.002 18.3 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|305663078|ref|YP_003859366.1| - 0.0036 16.9 0.0 0.036 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|305663078|ref|YP_003859366.1| - 0.0052 16.4 0.0 0.38 10.3 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.1 gi|305663078|ref|YP_003859366.1| - 0.0055 16.3 0.0 0.0085 15.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|305663078|ref|YP_003859366.1| - 0.007 16.2 0.0 0.018 14.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|305663078|ref|YP_003859366.1| - 0.009 16.1 0.0 0.027 14.6 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_18 PF13238.1 gi|305663078|ref|YP_003859366.1| - 0.013 15.8 0.6 0.062 13.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|305663078|ref|YP_003859366.1| - 0.017 15.9 2.8 0.12 13.2 0.2 2.6 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|305663078|ref|YP_003859366.1| - 0.019 14.9 0.0 0.041 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.13 gi|305663078|ref|YP_003859366.1| - 0.021 14.4 0.4 0.23 11.0 0.0 2.3 2 1 0 2 2 2 0 Bacterial dnaA protein AAA_19 PF13245.1 gi|305663078|ref|YP_003859366.1| - 0.029 14.1 0.0 0.068 12.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|305663078|ref|YP_003859366.1| - 0.032 13.9 0.0 0.061 13.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DAP3 PF10236.4 gi|305663078|ref|YP_003859366.1| - 0.044 12.7 0.0 0.16 10.8 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_23 PF13476.1 gi|305663078|ref|YP_003859366.1| - 0.053 13.8 0.1 0.25 11.6 0.0 1.9 2 1 0 2 2 2 0 AAA domain SieB PF14163.1 gi|305663078|ref|YP_003859366.1| - 0.088 12.3 0.1 0.23 11.0 0.1 1.6 1 0 0 1 1 1 0 Superinfection exclusion protein B Adeno_IVa2 PF02456.10 gi|305663078|ref|YP_003859366.1| - 0.15 10.6 0.0 0.23 10.0 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein PBP_like_2 PF12849.2 gi|305663079|ref|YP_003859367.1| - 1.9e-48 165.3 0.0 6.1e-48 163.6 0.0 1.7 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|305663079|ref|YP_003859367.1| - 3.6e-07 29.3 0.0 9.3e-07 27.9 0.0 1.6 1 1 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|305663079|ref|YP_003859367.1| - 9e-07 28.9 0.2 1.7e-06 27.9 0.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Shisa PF13908.1 gi|305663079|ref|YP_003859367.1| - 0.094 12.8 0.6 0.15 12.2 0.4 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator LysR_substrate PF03466.15 gi|305663079|ref|YP_003859367.1| - 0.21 10.6 0.0 0.32 10.0 0.0 1.2 1 0 0 1 1 1 0 LysR substrate binding domain GHMP_kinases_C PF08544.8 gi|305663080|ref|YP_003859368.1| - 0.00017 21.7 0.0 0.00039 20.5 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal DUF1464 PF07318.7 gi|305663081|ref|YP_003859369.1| - 4.3e-108 361.1 0.4 4.9e-108 360.9 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) ABC_tran PF00005.22 gi|305663084|ref|YP_003859372.1| - 7.6e-33 113.7 0.0 1.2e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305663084|ref|YP_003859372.1| - 9.4e-18 64.3 0.4 1.9e-17 63.3 0.3 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305663084|ref|YP_003859372.1| - 3.5e-12 46.9 0.2 3.9e-07 30.3 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305663084|ref|YP_003859372.1| - 9.1e-05 22.6 0.5 0.0011 19.0 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305663084|ref|YP_003859372.1| - 0.0027 17.1 0.3 0.14 11.5 0.0 2.0 1 1 0 2 2 2 1 AAA-like domain SMC_N PF02463.14 gi|305663084|ref|YP_003859372.1| - 0.0034 16.6 0.3 0.096 11.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305663084|ref|YP_003859372.1| - 0.0042 17.0 0.3 0.015 15.3 0.2 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|305663084|ref|YP_003859372.1| - 0.0048 15.4 0.1 0.041 12.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|305663084|ref|YP_003859372.1| - 0.0085 16.9 0.1 0.014 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663084|ref|YP_003859372.1| - 0.016 15.4 0.1 0.084 13.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|305663084|ref|YP_003859372.1| - 0.033 13.5 0.5 0.3 10.4 0.1 2.4 2 1 0 2 2 2 0 AAA domain DUF87 PF01935.12 gi|305663084|ref|YP_003859372.1| - 0.037 13.8 0.1 0.053 13.3 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|305663084|ref|YP_003859372.1| - 0.038 13.5 0.1 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|305663084|ref|YP_003859372.1| - 0.092 12.4 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|305663084|ref|YP_003859372.1| - 0.14 12.1 0.0 0.55 10.1 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|305663084|ref|YP_003859372.1| - 0.15 11.0 0.2 2.4 7.1 0.1 2.0 2 0 0 2 2 2 0 AAA ATPase domain ATP-synt_ab PF00006.20 gi|305663084|ref|YP_003859372.1| - 0.16 11.4 0.0 0.21 11.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NACHT PF05729.7 gi|305663084|ref|YP_003859372.1| - 0.32 10.6 1.2 1.2 8.8 0.4 2.2 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|305663085|ref|YP_003859373.1| - 2.7e-27 95.7 0.0 3.6e-27 95.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305663085|ref|YP_003859373.1| - 3.1e-21 75.4 0.3 5.3e-21 74.7 0.2 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305663085|ref|YP_003859373.1| - 2.3e-13 50.7 0.2 3.6e-08 33.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663085|ref|YP_003859373.1| - 2.3e-07 30.2 0.1 4.3e-06 26.1 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305663085|ref|YP_003859373.1| - 5.9e-06 25.7 0.0 1.2e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305663085|ref|YP_003859373.1| - 1.9e-05 24.7 0.0 3.1e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|305663085|ref|YP_003859373.1| - 0.00012 21.2 0.0 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|305663085|ref|YP_003859373.1| - 0.00092 19.3 0.5 0.011 15.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|305663085|ref|YP_003859373.1| - 0.0015 18.4 0.0 0.0038 17.1 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase T2SE PF00437.15 gi|305663085|ref|YP_003859373.1| - 0.0039 16.1 0.0 0.0067 15.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|305663085|ref|YP_003859373.1| - 0.0046 16.3 0.2 0.11 11.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|305663085|ref|YP_003859373.1| - 0.0049 16.7 0.0 0.011 15.5 0.0 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 ABC_ATPase PF09818.4 gi|305663085|ref|YP_003859373.1| - 0.0049 15.5 0.6 0.35 9.3 0.1 2.3 2 0 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|305663085|ref|YP_003859373.1| - 0.0064 15.6 0.0 0.014 14.5 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|305663085|ref|YP_003859373.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|305663085|ref|YP_003859373.1| - 0.0078 15.6 0.1 0.13 11.6 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|305663085|ref|YP_003859373.1| - 0.009 15.7 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|305663085|ref|YP_003859373.1| - 0.028 13.2 0.0 0.042 12.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Miro PF08477.8 gi|305663085|ref|YP_003859373.1| - 0.034 14.6 0.3 0.13 12.8 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|305663085|ref|YP_003859373.1| - 0.046 13.3 0.1 0.095 12.3 0.0 1.6 1 1 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|305663085|ref|YP_003859373.1| - 0.052 13.8 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|305663085|ref|YP_003859373.1| - 0.079 12.6 0.0 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|305663085|ref|YP_003859373.1| - 0.094 13.0 0.1 0.23 11.7 0.0 1.8 2 1 0 2 2 1 0 AAA domain AAA_17 PF13207.1 gi|305663085|ref|YP_003859373.1| - 0.098 13.4 0.0 0.16 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain YwqJ-deaminase PF14431.1 gi|305663085|ref|YP_003859373.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 YwqJ-like deaminase NTPase_1 PF03266.10 gi|305663085|ref|YP_003859373.1| - 0.13 11.9 0.1 0.42 10.2 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.1 gi|305663085|ref|YP_003859373.1| - 0.16 11.8 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|305663086|ref|YP_003859374.1| - 1.7e-26 92.8 13.0 1.7e-26 92.8 9.0 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305663086|ref|YP_003859374.1| - 7.4e-05 22.0 1.8 7.4e-05 22.0 1.3 3.7 4 1 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C MARVEL PF01284.18 gi|305663086|ref|YP_003859374.1| - 9.5 6.0 12.8 0.36 10.6 4.2 2.0 2 0 0 2 2 2 0 Membrane-associating domain BPD_transp_1 PF00528.17 gi|305663087|ref|YP_003859375.1| - 2.3e-43 147.8 13.2 2.3e-43 147.8 9.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|305663088|ref|YP_003859376.1| - 1.9e-94 316.5 2.6 2.6e-94 316.1 1.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle OpuAC PF04069.7 gi|305663088|ref|YP_003859376.1| - 0.0026 17.1 0.0 1.5 8.1 0.0 2.6 2 0 0 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system ABC2_membrane_2 PF12679.2 gi|305663088|ref|YP_003859376.1| - 0.092 11.5 0.0 0.14 10.9 0.0 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein Gly-zipper_Omp PF13488.1 gi|305663089|ref|YP_003859377.1| - 0.00086 18.8 0.5 0.0014 18.2 0.4 1.3 1 0 0 1 1 1 1 Glycine zipper Acyl_transf_3 PF01757.17 gi|305663089|ref|YP_003859377.1| - 0.021 13.6 1.7 0.026 13.3 1.2 1.0 1 0 0 1 1 1 0 Acyltransferase family Na_Ca_ex PF01699.19 gi|305663089|ref|YP_003859377.1| - 0.14 11.7 8.7 0.35 10.4 6.1 1.6 1 1 0 1 1 1 0 Sodium/calcium exchanger protein Bacteriocin_IIc PF10439.4 gi|305663089|ref|YP_003859377.1| - 0.32 11.1 5.0 0.1 12.7 1.4 1.6 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide DUF1129 PF06570.6 gi|305663089|ref|YP_003859377.1| - 0.57 9.4 3.2 0.78 9.0 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF202 PF02656.10 gi|305663089|ref|YP_003859377.1| - 2.4 8.4 11.2 6.3e+02 0.6 7.8 3.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF998 PF06197.8 gi|305663089|ref|YP_003859377.1| - 2.7 7.2 12.0 0.31 10.3 3.2 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF998) bPH_2 PF03703.9 gi|305663090|ref|YP_003859378.1| - 2.2e-14 53.2 0.0 4.1e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial PH domain DUF805 PF05656.9 gi|305663090|ref|YP_003859378.1| - 5.8 6.7 7.6 9 6.1 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) DUF1426 PF07234.6 gi|305663090|ref|YP_003859378.1| - 7.7 6.2 10.5 0.49 10.1 3.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1426) KaiC PF06745.8 gi|305663091|ref|YP_003859379.1| - 1.2e-29 103.0 0.0 1.9e-27 95.8 0.0 2.1 2 0 0 2 2 2 1 KaiC AAA_25 PF13481.1 gi|305663091|ref|YP_003859379.1| - 1.9e-08 33.9 0.0 5.1e-08 32.5 0.0 1.6 2 0 0 2 2 2 1 AAA domain GvpD PF07088.6 gi|305663091|ref|YP_003859379.1| - 8e-07 27.7 0.0 2.4e-06 26.1 0.0 1.8 2 0 0 2 2 2 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|305663091|ref|YP_003859379.1| - 1.5e-05 24.6 0.0 5e-05 22.9 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_14 PF13173.1 gi|305663091|ref|YP_003859379.1| - 4.4e-05 23.3 0.0 0.00017 21.4 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|305663091|ref|YP_003859379.1| - 0.00014 22.1 0.0 0.00044 20.4 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|305663091|ref|YP_003859379.1| - 0.0003 20.9 0.0 0.00065 19.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|305663091|ref|YP_003859379.1| - 0.00059 19.5 0.4 0.3 10.7 0.0 2.7 2 1 0 2 2 2 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|305663091|ref|YP_003859379.1| - 0.0027 17.1 0.0 0.006 16.0 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_17 PF13207.1 gi|305663091|ref|YP_003859379.1| - 0.0052 17.5 0.2 0.014 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663091|ref|YP_003859379.1| - 0.009 16.0 0.0 0.065 13.2 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|305663091|ref|YP_003859379.1| - 0.012 15.9 0.3 0.049 13.9 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|305663091|ref|YP_003859379.1| - 0.014 14.9 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663091|ref|YP_003859379.1| - 0.015 14.9 0.0 0.028 14.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain DUF2075 PF09848.4 gi|305663091|ref|YP_003859379.1| - 0.023 13.6 0.0 0.032 13.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) SPA PF08616.5 gi|305663091|ref|YP_003859379.1| - 0.042 13.5 0.1 1.9 8.2 0.0 2.4 2 0 0 2 2 2 0 Stabilization of polarity axis cobW PF02492.14 gi|305663091|ref|YP_003859379.1| - 0.05 13.0 0.0 0.088 12.2 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|305663091|ref|YP_003859379.1| - 0.07 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|305663091|ref|YP_003859379.1| - 0.081 11.7 0.0 0.16 10.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain T2SE PF00437.15 gi|305663091|ref|YP_003859379.1| - 0.094 11.5 0.0 0.17 10.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|305663091|ref|YP_003859379.1| - 0.1 11.9 0.0 0.22 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain PS_Dcarbxylase PF02666.10 gi|305663091|ref|YP_003859379.1| - 0.13 11.5 0.0 0.3 10.3 0.0 1.7 2 0 0 2 2 2 0 Phosphatidylserine decarboxylase Viral_helicase1 PF01443.13 gi|305663091|ref|YP_003859379.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|305663091|ref|YP_003859379.1| - 0.25 10.9 0.0 0.38 10.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain DUF553 PF04473.7 gi|305663092|ref|YP_003859380.1| - 6.2e-29 100.2 3.5 9e-28 96.4 2.4 2.6 1 1 0 1 1 1 1 Transglutaminase-like domain Transglut_core PF01841.14 gi|305663092|ref|YP_003859380.1| - 2.8e-05 24.2 0.0 7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily TBCC PF07986.7 gi|305663092|ref|YP_003859380.1| - 0.14 11.6 2.6 0.37 10.2 1.8 1.7 1 0 0 1 1 1 0 Tubulin binding cofactor C TrmB PF01978.14 gi|305663095|ref|YP_003859383.1| - 0.0019 17.8 3.2 0.24 11.1 0.2 3.9 3 1 1 4 4 4 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|305663095|ref|YP_003859383.1| - 0.013 15.3 0.2 0.16 11.7 0.0 2.5 2 0 0 2 2 2 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|305663095|ref|YP_003859383.1| - 0.026 14.4 0.5 12 5.8 0.1 2.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) DUF4477 PF14780.1 gi|305663095|ref|YP_003859383.1| - 0.064 12.6 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4477) vATP-synt_E PF01991.13 gi|305663095|ref|YP_003859383.1| - 0.14 11.3 4.4 0.36 10.0 0.1 2.7 3 0 0 3 3 3 0 ATP synthase (E/31 kDa) subunit HTH_24 PF13412.1 gi|305663095|ref|YP_003859383.1| - 0.17 11.3 2.2 1 8.8 0.0 3.1 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding DUF2877 PF11392.3 gi|305663096|ref|YP_003859384.1| - 0.016 15.4 0.5 0.71 10.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2877) Apidaecin PF00807.12 gi|305663096|ref|YP_003859384.1| - 0.12 12.1 0.4 0.22 11.2 0.3 1.4 1 0 0 1 1 1 0 Apidaecin PQQ_3 PF13570.1 gi|305663096|ref|YP_003859384.1| - 0.18 12.1 10.7 5.5 7.3 0.1 5.0 4 0 0 4 4 4 0 PQQ-like domain Mut7-C PF01927.11 gi|305663097|ref|YP_003859385.1| - 5.4e-06 26.4 0.0 5.4e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain TIR PF01582.15 gi|305663097|ref|YP_003859385.1| - 0.008 15.6 0.2 0.013 14.8 0.1 1.3 1 0 0 1 1 1 1 TIR domain Glyco_hydro_72 PF03198.9 gi|305663097|ref|YP_003859385.1| - 0.031 13.2 0.0 0.031 13.2 0.0 1.1 1 0 0 1 1 1 0 Glucanosyltransferase PIN PF01850.16 gi|305663097|ref|YP_003859385.1| - 0.085 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 PIN domain TIR_2 PF13676.1 gi|305663097|ref|YP_003859385.1| - 0.14 12.3 0.0 0.33 11.1 0.0 1.6 2 0 0 2 2 2 0 TIR domain DUF433 PF04255.9 gi|305663098|ref|YP_003859386.1| - 5e-28 96.2 0.1 6.3e-28 95.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF433) Phosphorylase PF00343.15 gi|305663101|ref|YP_003859389.1| - 0.065 11.1 0.0 0.072 10.9 0.0 1.1 1 0 0 1 1 1 0 Carbohydrate phosphorylase PaREP1 PF05942.6 gi|305663102|ref|YP_003859390.1| - 2.1e-26 92.0 1.4 2.4e-26 91.8 0.9 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.8 gi|305663102|ref|YP_003859390.1| - 0.027 14.1 0.1 0.13 12.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF357) DUF872 PF05915.7 gi|305663104|ref|YP_003859392.1| - 0.038 13.8 0.1 0.43 10.4 0.0 2.2 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF4097 PF13349.1 gi|305663104|ref|YP_003859392.1| - 0.31 10.5 4.8 0.89 9.0 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4097) DUF4405 PF14358.1 gi|305663104|ref|YP_003859392.1| - 0.61 10.2 6.8 0.2 11.8 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF1049 PF06305.6 gi|305663104|ref|YP_003859392.1| - 0.88 9.0 0.0 0.88 9.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) IncA PF04156.9 gi|305663104|ref|YP_003859392.1| - 2.1 7.9 7.0 7 6.1 2.8 2.1 2 0 0 2 2 2 0 IncA protein DUF3040 PF11239.3 gi|305663104|ref|YP_003859392.1| - 7.1 6.7 6.2 13 5.8 2.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) DUF996 PF06195.8 gi|305663105|ref|YP_003859393.1| - 1.6e-22 79.9 28.9 1.6e-22 79.9 20.1 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF996) DUF1077 PF06417.7 gi|305663105|ref|YP_003859393.1| - 0.44 9.8 9.4 0.088 12.1 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1077) DUF973 PF06157.6 gi|305663105|ref|YP_003859393.1| - 1.4 7.8 46.8 0.23 10.3 15.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF973) Phage_GPO PF05929.6 gi|305663106|ref|YP_003859394.1| - 0.037 13.2 1.4 0.062 12.5 1.0 1.3 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF812 PF05667.6 gi|305663106|ref|YP_003859394.1| - 0.59 8.5 5.2 0.12 10.8 1.4 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF812) Mitofilin PF09731.4 gi|305663106|ref|YP_003859394.1| - 0.59 8.7 9.1 0.13 10.8 4.1 1.4 2 0 0 2 2 2 0 Mitochondrial inner membrane protein FlgN PF05130.7 gi|305663106|ref|YP_003859394.1| - 0.72 10.0 3.6 0.46 10.7 0.4 2.0 2 1 0 2 2 2 0 FlgN protein PmbA_TldD PF01523.11 gi|305663106|ref|YP_003859394.1| - 0.8 8.9 4.3 5.2 6.2 0.1 2.3 1 1 0 2 2 2 0 Putative modulator of DNA gyrase TPR_MLP1_2 PF07926.7 gi|305663106|ref|YP_003859394.1| - 3.7 7.2 8.9 0.8 9.4 3.1 1.9 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF4375 PF14300.1 gi|305663106|ref|YP_003859394.1| - 4.6 7.2 8.1 2.6 8.0 3.5 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4375) PSK_trans_fac PF07704.6 gi|305663106|ref|YP_003859394.1| - 5.9 7.6 10.2 1.3 9.7 2.8 2.5 2 1 1 3 3 3 0 Rv0623-like transcription factor DUF2223 PF09985.4 gi|305663108|ref|YP_003859396.1| - 7.7e-52 175.8 0.3 1.2e-51 175.2 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) Mononeg_mRNAcap PF14318.1 gi|305663108|ref|YP_003859396.1| - 6.5e-05 22.0 0.3 9e-05 21.6 0.2 1.2 1 0 0 1 1 1 1 Mononegavirales mRNA-capping region V BCLP PF12304.3 gi|305663108|ref|YP_003859396.1| - 0.21 10.9 2.4 0.39 10.1 1.6 1.3 1 0 0 1 1 1 0 Beta-casein like protein DUF912 PF06024.7 gi|305663108|ref|YP_003859396.1| - 4 7.5 7.0 10 6.2 0.5 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) Glyco_hydro_57 PF03065.10 gi|305663109|ref|YP_003859397.1| - 2.5e-94 316.1 0.6 3.5e-94 315.6 0.4 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 DUF2223 PF09985.4 gi|305663109|ref|YP_003859397.1| - 4e-65 219.3 1.7 2.5e-64 216.7 0.4 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF2223) Glyco_hydro_53 PF07745.8 gi|305663110|ref|YP_003859398.1| - 2e-114 381.8 0.1 2.8e-114 381.3 0.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 53 DUF2223 PF09985.4 gi|305663110|ref|YP_003859398.1| - 9.7e-43 146.1 1.1 2.3e-42 144.8 0.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) Big_4 PF07532.6 gi|305663110|ref|YP_003859398.1| - 3.1e-12 45.8 2.1 1.1e-11 44.0 1.5 2.0 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 4) Cellulase PF00150.13 gi|305663110|ref|YP_003859398.1| - 2.3e-08 33.5 0.9 4e-08 32.7 0.7 1.3 1 0 0 1 1 1 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_cc PF11790.3 gi|305663110|ref|YP_003859398.1| - 0.00074 19.0 0.1 0.0016 17.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase catalytic core UPF0154 PF03672.8 gi|305663110|ref|YP_003859398.1| - 0.2 11.2 1.5 0.44 10.2 1.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) BPD_transp_1 PF00528.17 gi|305663111|ref|YP_003859399.1| - 8.8e-13 48.1 18.6 8.8e-13 48.1 12.9 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|305663112|ref|YP_003859400.1| - 1.2e-13 50.9 23.1 1.2e-13 50.9 16.0 2.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|305663113|ref|YP_003859401.1| - 1.5e-27 97.0 0.2 2e-27 96.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|305663113|ref|YP_003859401.1| - 8.4e-22 78.2 1.2 1.4e-21 77.5 0.8 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|305663113|ref|YP_003859401.1| - 0.0067 15.7 0.1 1.5 8.0 0.0 2.6 3 0 0 3 3 3 2 Bacterial extracellular solute-binding protein FAP PF07174.6 gi|305663113|ref|YP_003859401.1| - 1.5 8.0 18.2 2.4 7.3 12.6 1.2 1 0 0 1 1 1 0 Fibronectin-attachment protein (FAP) ABC_tran PF00005.22 gi|305663114|ref|YP_003859402.1| - 8.8e-34 116.7 0.0 1.3e-33 116.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663114|ref|YP_003859402.1| - 2.5e-12 47.3 0.0 2e-05 24.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|305663114|ref|YP_003859402.1| - 2.4e-06 27.4 0.0 4.8e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 TOBE domain AAA_15 PF13175.1 gi|305663114|ref|YP_003859402.1| - 5.3e-06 25.7 0.0 0.001 18.1 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|305663114|ref|YP_003859402.1| - 9.3e-06 25.0 0.3 9.4e-05 21.7 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|305663114|ref|YP_003859402.1| - 1.3e-05 25.1 0.0 0.00088 19.3 0.0 3.0 3 0 0 3 3 3 1 TOBE domain AAA_17 PF13207.1 gi|305663114|ref|YP_003859402.1| - 0.00011 22.9 0.1 0.00031 21.5 0.0 2.1 2 1 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|305663114|ref|YP_003859402.1| - 0.00017 21.6 0.1 0.00037 20.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|305663114|ref|YP_003859402.1| - 0.00045 20.5 0.2 0.00065 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663114|ref|YP_003859402.1| - 0.00096 19.4 0.0 0.0027 18.0 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|305663114|ref|YP_003859402.1| - 0.0024 17.3 0.0 0.006 16.0 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Pyr_redox PF00070.22 gi|305663114|ref|YP_003859402.1| - 0.0055 17.0 0.2 0.24 11.8 0.0 3.1 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase AAA_19 PF13245.1 gi|305663114|ref|YP_003859402.1| - 0.012 15.3 0.0 0.03 14.0 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|305663114|ref|YP_003859402.1| - 0.012 15.0 0.0 0.24 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|305663114|ref|YP_003859402.1| - 0.02 15.0 0.0 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|305663114|ref|YP_003859402.1| - 0.029 14.1 0.4 0.061 13.0 0.3 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|305663114|ref|YP_003859402.1| - 0.047 13.8 0.0 0.2 11.8 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|305663114|ref|YP_003859402.1| - 0.051 13.4 0.2 0.38 10.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain Trigger_C PF05698.9 gi|305663114|ref|YP_003859402.1| - 0.062 13.1 0.2 0.11 12.3 0.1 1.4 1 1 0 1 1 1 0 Bacterial trigger factor protein (TF) C-terminus AAA_10 PF12846.2 gi|305663114|ref|YP_003859402.1| - 0.074 12.4 0.0 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|305663114|ref|YP_003859402.1| - 0.086 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|305663114|ref|YP_003859402.1| - 0.12 11.4 0.0 4.2 6.4 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|305663114|ref|YP_003859402.1| - 0.15 11.9 0.0 0.5 10.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF1268 PF06896.6 gi|305663115|ref|YP_003859403.1| - 0.0041 17.4 1.0 0.2 12.0 0.0 2.1 1 1 1 2 2 2 2 Protein of unknown function (DUF1268) RPT PF13446.1 gi|305663115|ref|YP_003859403.1| - 0.016 14.6 0.2 0.03 13.7 0.1 1.4 1 0 0 1 1 1 0 A repeated domain in UCH-protein CBFD_NFYB_HMF PF00808.18 gi|305663115|ref|YP_003859403.1| - 0.04 13.9 1.4 0.04 13.9 1.0 2.4 2 1 0 2 2 2 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Nbl1_Borealin_N PF10444.4 gi|305663115|ref|YP_003859403.1| - 0.078 12.3 0.2 0.18 11.1 0.1 1.6 1 0 0 1 1 1 0 Nbl1 / Borealin N terminal Snapin_Pallidin PF14712.1 gi|305663116|ref|YP_003859404.1| - 0.0016 18.7 3.5 0.0018 18.5 1.1 2.0 2 0 0 2 2 2 1 Snapin/Pallidin GAS PF13851.1 gi|305663116|ref|YP_003859404.1| - 0.0025 17.0 6.7 0.0025 17.0 4.6 1.7 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding EzrA PF06160.7 gi|305663116|ref|YP_003859404.1| - 0.0072 14.5 7.1 0.065 11.3 4.9 2.2 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA RmuC PF02646.11 gi|305663116|ref|YP_003859404.1| - 0.016 14.0 5.2 0.35 9.6 1.5 3.0 2 1 0 2 2 2 0 RmuC family V_ATPase_I PF01496.14 gi|305663116|ref|YP_003859404.1| - 0.024 12.5 0.9 0.027 12.3 0.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Sec3_C PF09763.4 gi|305663116|ref|YP_003859404.1| - 0.028 12.5 1.8 0.041 12.0 1.2 1.2 1 0 0 1 1 1 0 Exocyst complex component Sec3 IFT57 PF10498.4 gi|305663116|ref|YP_003859404.1| - 0.084 11.6 3.7 0.14 10.8 2.6 1.4 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 BLOC1_2 PF10046.4 gi|305663116|ref|YP_003859404.1| - 0.096 12.8 2.9 0.7 10.0 0.1 2.8 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF16 PF01519.11 gi|305663116|ref|YP_003859404.1| - 0.19 11.9 1.4 0.45 10.7 1.0 1.7 1 0 0 1 1 1 0 Protein of unknown function DUF16 DUF1515 PF07439.6 gi|305663116|ref|YP_003859404.1| - 0.26 11.0 4.1 0.53 10.1 2.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1515) PspA_IM30 PF04012.7 gi|305663116|ref|YP_003859404.1| - 0.34 10.2 4.8 0.28 10.5 1.6 1.8 2 0 0 2 2 2 0 PspA/IM30 family DUF1664 PF07889.7 gi|305663116|ref|YP_003859404.1| - 0.36 10.6 5.9 2.2 8.0 0.6 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) Spc24 PF08286.6 gi|305663116|ref|YP_003859404.1| - 0.37 10.5 8.4 44 3.8 5.2 2.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 DUF342 PF03961.8 gi|305663116|ref|YP_003859404.1| - 0.37 9.1 7.1 0.059 11.7 2.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF342) TPR_MLP1_2 PF07926.7 gi|305663116|ref|YP_003859404.1| - 0.42 10.3 5.7 5.5 6.7 0.2 2.6 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein GrpE PF01025.14 gi|305663116|ref|YP_003859404.1| - 0.78 9.2 8.1 0.86 9.1 3.6 2.1 2 0 0 2 2 2 0 GrpE GvpL_GvpF PF06386.6 gi|305663116|ref|YP_003859404.1| - 0.78 9.2 3.6 1.2 8.6 2.5 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF Occludin_ELL PF07303.8 gi|305663116|ref|YP_003859404.1| - 1.1 9.9 6.4 6.3 7.5 1.0 2.7 2 1 1 3 3 3 0 Occludin homology domain COG2 PF06148.6 gi|305663116|ref|YP_003859404.1| - 1.2 9.0 6.0 0.47 10.3 1.7 2.1 2 1 1 3 3 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ADIP PF11559.3 gi|305663116|ref|YP_003859404.1| - 1.3 8.9 7.2 4.8 7.0 0.2 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding MtrG PF04210.8 gi|305663116|ref|YP_003859404.1| - 1.4 8.6 4.7 1.4 8.6 0.2 2.8 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G EMP24_GP25L PF01105.19 gi|305663116|ref|YP_003859404.1| - 1.5 8.5 5.5 3.4 7.3 0.8 2.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF972 PF06156.8 gi|305663116|ref|YP_003859404.1| - 2.1 8.7 9.1 4.8 7.5 1.4 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF972) YvrJ PF12841.2 gi|305663116|ref|YP_003859404.1| - 3.5 7.0 5.7 7.1 6.0 0.2 3.2 3 0 0 3 3 3 0 YvrJ protein family DUF724 PF05266.9 gi|305663116|ref|YP_003859404.1| - 3.5 7.1 6.5 7.4 6.1 4.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF724) IncA PF04156.9 gi|305663116|ref|YP_003859404.1| - 6.3 6.3 9.8 3.1 7.3 5.1 1.7 2 0 0 2 2 2 0 IncA protein CCDC-167 PF15188.1 gi|305663116|ref|YP_003859404.1| - 8 6.4 12.4 0.51 10.3 0.8 3.3 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 zf-C4H2 PF10146.4 gi|305663116|ref|YP_003859404.1| - 10 6.0 9.6 12 5.8 5.9 1.6 1 1 0 1 1 1 0 Zinc finger-containing protein Arch_ATPase PF01637.13 gi|305663117|ref|YP_003859405.1| - 6.1e-55 186.4 0.1 1e-54 185.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663117|ref|YP_003859405.1| - 7.6e-07 29.2 0.3 4.4e-06 26.8 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|305663117|ref|YP_003859405.1| - 0.00031 20.6 0.0 0.0018 18.1 0.0 2.4 2 2 1 3 3 3 1 AAA domain NB-ARC PF00931.17 gi|305663117|ref|YP_003859405.1| - 0.0014 17.5 0.0 0.0028 16.5 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain Bac_DnaA PF00308.13 gi|305663117|ref|YP_003859405.1| - 0.0071 16.0 0.0 0.019 14.5 0.0 1.8 2 0 0 2 2 2 1 Bacterial dnaA protein AAA PF00004.24 gi|305663117|ref|YP_003859405.1| - 0.0084 16.3 0.0 0.018 15.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305663117|ref|YP_003859405.1| - 0.0085 15.8 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) KaiC PF06745.8 gi|305663117|ref|YP_003859405.1| - 0.0092 15.1 0.9 0.055 12.5 0.0 2.1 2 0 0 2 2 2 1 KaiC ATP_bind_1 PF03029.12 gi|305663117|ref|YP_003859405.1| - 0.012 15.1 0.0 0.062 12.8 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|305663117|ref|YP_003859405.1| - 0.022 14.9 0.0 0.054 13.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|305663117|ref|YP_003859405.1| - 0.024 14.7 0.0 0.059 13.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|305663117|ref|YP_003859405.1| - 0.03 15.1 0.2 0.27 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.10 gi|305663117|ref|YP_003859405.1| - 0.033 12.8 0.0 0.046 12.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus IVa2 protein MobB PF03205.9 gi|305663117|ref|YP_003859405.1| - 0.035 13.8 0.0 0.073 12.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|305663117|ref|YP_003859405.1| - 0.056 12.8 0.0 2.1 7.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain DAP3 PF10236.4 gi|305663117|ref|YP_003859405.1| - 0.063 12.2 0.0 0.28 10.0 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ABC_tran PF00005.22 gi|305663117|ref|YP_003859405.1| - 0.064 13.5 0.0 0.14 12.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter NTPase_1 PF03266.10 gi|305663117|ref|YP_003859405.1| - 0.07 12.8 0.0 0.26 11.0 0.0 2.0 2 0 0 2 2 2 0 NTPase AAA_24 PF13479.1 gi|305663117|ref|YP_003859405.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|305663117|ref|YP_003859405.1| - 0.088 12.7 0.0 0.21 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_35 PF14516.1 gi|305663117|ref|YP_003859405.1| - 0.13 10.8 0.0 0.69 8.4 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|305663117|ref|YP_003859405.1| - 0.15 11.6 0.0 0.27 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1626 PF07788.6 gi|305663118|ref|YP_003859406.1| - 1.2e-22 79.5 1.3 2.5e-22 78.4 0.9 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|305663118|ref|YP_003859406.1| - 1.2e-06 28.2 19.3 9.4e-06 25.3 13.4 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) RmuC PF02646.11 gi|305663118|ref|YP_003859406.1| - 0.00045 19.1 3.0 0.049 12.4 0.2 2.2 1 1 1 2 2 2 2 RmuC family DUF4618 PF15397.1 gi|305663118|ref|YP_003859406.1| - 0.0011 18.3 1.4 0.0017 17.7 0.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) Tox-ODYAM1 PF15642.1 gi|305663118|ref|YP_003859406.1| - 0.0018 17.0 3.6 0.0027 16.4 2.5 1.2 1 0 0 1 1 1 1 Toxin in Odyssella and Amoebophilus TelA PF05816.6 gi|305663118|ref|YP_003859406.1| - 0.0036 16.0 6.2 0.082 11.6 1.0 2.1 1 1 1 2 2 2 2 Toxic anion resistance protein (TelA) AAA_13 PF13166.1 gi|305663118|ref|YP_003859406.1| - 0.0049 15.4 2.8 0.0066 14.9 2.0 1.1 1 0 0 1 1 1 1 AAA domain Vac_Fusion PF02346.11 gi|305663118|ref|YP_003859406.1| - 0.0062 15.9 14.1 0.067 12.6 2.6 3.4 2 1 1 3 3 3 2 Chordopoxvirus fusion protein Phlebovirus_NSM PF07246.6 gi|305663118|ref|YP_003859406.1| - 0.009 15.1 10.3 0.1 11.7 1.7 2.6 1 1 1 2 2 2 1 Phlebovirus nonstructural protein NS-M Sec3_C PF09763.4 gi|305663118|ref|YP_003859406.1| - 0.011 13.9 2.3 0.35 8.9 0.1 2.2 1 1 0 2 2 2 0 Exocyst complex component Sec3 Hemagglutinin PF00509.13 gi|305663118|ref|YP_003859406.1| - 0.014 13.5 5.0 0.2 9.7 0.9 2.5 1 1 2 3 3 3 0 Haemagglutinin IncA PF04156.9 gi|305663118|ref|YP_003859406.1| - 0.015 14.8 13.3 0.14 11.7 2.8 2.3 1 1 1 2 2 2 0 IncA protein Myb_DNA-bind_4 PF13837.1 gi|305663118|ref|YP_003859406.1| - 0.018 15.1 3.5 0.2 11.7 0.3 2.7 1 1 0 2 2 2 0 Myb/SANT-like DNA-binding domain Baculo_PEP_C PF04513.7 gi|305663118|ref|YP_003859406.1| - 0.019 14.8 0.0 2.5 7.9 0.0 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Phage_lysis PF03245.8 gi|305663118|ref|YP_003859406.1| - 0.022 14.7 2.9 2.8 7.9 0.0 3.1 1 1 1 3 3 3 0 Bacteriophage Rz lysis protein EzrA PF06160.7 gi|305663118|ref|YP_003859406.1| - 0.03 12.5 6.2 0.22 9.6 4.0 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Laminin_I PF06008.9 gi|305663118|ref|YP_003859406.1| - 0.039 13.2 2.3 0.069 12.4 1.6 1.4 1 0 0 1 1 1 0 Laminin Domain I Streptin-Immun PF11083.3 gi|305663118|ref|YP_003859406.1| - 0.042 13.8 6.1 3.4 7.7 0.1 2.9 1 1 0 2 2 2 0 Lantibiotic streptin immunity protein FH2 PF02181.18 gi|305663118|ref|YP_003859406.1| - 0.05 12.4 4.6 0.047 12.5 0.9 1.9 1 1 1 2 2 2 0 Formin Homology 2 Domain AATF-Che1 PF13339.1 gi|305663118|ref|YP_003859406.1| - 0.051 13.7 2.1 0.97 9.5 1.4 2.6 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor DUF1664 PF07889.7 gi|305663118|ref|YP_003859406.1| - 0.068 12.9 2.8 0.79 9.5 0.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) COG5 PF10392.4 gi|305663118|ref|YP_003859406.1| - 0.082 12.8 0.0 6.7 6.6 0.0 2.4 2 1 0 2 2 2 0 Golgi transport complex subunit 5 Occludin_ELL PF07303.8 gi|305663118|ref|YP_003859406.1| - 0.086 13.5 8.5 0.74 10.5 1.1 2.6 1 1 0 2 2 2 0 Occludin homology domain GAS PF13851.1 gi|305663118|ref|YP_003859406.1| - 0.09 11.9 9.1 0.61 9.2 5.8 2.3 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.7 gi|305663118|ref|YP_003859406.1| - 0.11 12.3 3.4 0.18 11.5 1.0 2.2 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF2884 PF11101.3 gi|305663118|ref|YP_003859406.1| - 0.14 11.5 2.2 0.43 9.9 1.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) DUF2130 PF09903.4 gi|305663118|ref|YP_003859406.1| - 0.14 10.9 9.6 0.52 8.9 0.4 2.6 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2130) Phage_GPO PF05929.6 gi|305663118|ref|YP_003859406.1| - 0.23 10.6 1.3 11 5.1 0.1 2.1 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF2317 PF10079.4 gi|305663118|ref|YP_003859406.1| - 0.24 9.9 5.0 0.21 10.1 1.9 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF1515 PF07439.6 gi|305663118|ref|YP_003859406.1| - 0.37 10.6 8.2 4.6 7.1 0.4 3.6 1 1 0 2 2 2 0 Protein of unknown function (DUF1515) NAP PF00956.13 gi|305663118|ref|YP_003859406.1| - 0.44 9.6 6.2 14 4.6 4.2 2.2 1 1 0 1 1 1 0 Nucleosome assembly protein (NAP) PRKCSH_1 PF13015.1 gi|305663118|ref|YP_003859406.1| - 0.48 9.8 2.2 2.8 7.3 0.1 2.8 2 1 1 3 3 3 0 Glucosidase II beta subunit-like protein DUF4375 PF14300.1 gi|305663118|ref|YP_003859406.1| - 0.5 10.3 11.7 5.9 6.9 4.5 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4375) GrpE PF01025.14 gi|305663118|ref|YP_003859406.1| - 0.55 9.7 10.8 0.43 10.1 1.2 2.5 1 1 1 2 2 2 0 GrpE DUF1910 PF08928.5 gi|305663118|ref|YP_003859406.1| - 0.56 10.2 6.4 1.7 8.7 1.5 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) Tropomyosin PF00261.15 gi|305663118|ref|YP_003859406.1| - 0.58 9.2 17.4 0.97 8.4 9.9 2.5 2 1 0 2 2 2 0 Tropomyosin Tho2 PF11262.3 gi|305663118|ref|YP_003859406.1| - 0.72 8.8 4.0 3.8 6.4 0.3 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF4200 PF13863.1 gi|305663118|ref|YP_003859406.1| - 0.87 9.5 18.9 2.2 8.2 5.4 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Prefoldin PF02996.12 gi|305663118|ref|YP_003859406.1| - 1 8.9 6.8 7.4 6.2 0.1 3.9 2 2 2 4 4 4 0 Prefoldin subunit DUF16 PF01519.11 gi|305663118|ref|YP_003859406.1| - 1.2 9.3 4.0 12 6.1 2.7 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF16 ACCA PF03255.9 gi|305663118|ref|YP_003859406.1| - 1.2 8.6 6.0 2.2 7.8 0.3 2.6 2 1 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Atg14 PF10186.4 gi|305663118|ref|YP_003859406.1| - 1.5 7.6 8.3 2.3 7.0 1.8 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 PMC2NT PF08066.7 gi|305663118|ref|YP_003859406.1| - 1.7 9.0 5.3 20 5.5 0.3 2.7 2 1 1 3 3 2 0 PMC2NT (NUC016) domain Prefoldin_2 PF01920.15 gi|305663118|ref|YP_003859406.1| - 1.8 8.3 8.3 6.9 6.4 0.2 3.4 1 1 2 3 3 3 0 Prefoldin subunit GvpK PF05121.7 gi|305663118|ref|YP_003859406.1| - 1.9 8.3 7.3 15 5.5 0.1 4.0 1 1 3 4 4 4 0 Gas vesicle protein K DUF724 PF05266.9 gi|305663118|ref|YP_003859406.1| - 2 8.0 11.1 8 6.0 0.7 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF724) Nup54 PF13874.1 gi|305663118|ref|YP_003859406.1| - 2.2 7.9 5.2 22 4.7 0.2 2.6 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF922 PF06037.6 gi|305663118|ref|YP_003859406.1| - 2.3 7.5 8.3 11 5.3 0.4 3.0 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF922) Flu_NS2 PF00601.14 gi|305663118|ref|YP_003859406.1| - 2.5 8.3 10.8 20 5.4 0.7 3.6 1 1 2 3 3 3 0 Influenza non-structural protein (NS2) KxDL PF10241.4 gi|305663118|ref|YP_003859406.1| - 3.6 7.5 6.4 4 7.4 0.9 2.9 1 1 2 3 3 3 0 Uncharacterized conserved protein TMF_TATA_bd PF12325.3 gi|305663118|ref|YP_003859406.1| - 5.2 6.8 12.9 8.4 6.1 4.1 2.8 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding XhlA PF10779.4 gi|305663118|ref|YP_003859406.1| - 5.7 6.9 11.3 1.5 8.7 0.5 3.2 2 1 0 2 2 2 0 Haemolysin XhlA SpoOE-like PF09388.5 gi|305663118|ref|YP_003859406.1| - 6.9 6.2 9.3 5 6.7 0.0 4.1 4 1 0 4 4 4 0 Spo0E like sporulation regulatory protein DUF2951 PF11166.3 gi|305663118|ref|YP_003859406.1| - 7.8 6.4 13.0 10 6.0 1.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) EmrE PF13536.1 gi|305663119|ref|YP_003859407.1| - 0.42 10.8 11.5 0.11 12.7 4.2 2.2 2 1 0 2 2 2 0 Multidrug resistance efflux transporter Antitoxin-MazE PF04014.13 gi|305663120|ref|YP_003859408.1| - 1.2e-11 43.9 0.5 1.7e-11 43.5 0.4 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Molydop_binding PF01568.16 gi|305663120|ref|YP_003859408.1| - 0.00036 20.3 0.0 0.00038 20.2 0.0 1.1 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain SymE_toxin PF08845.5 gi|305663120|ref|YP_003859408.1| - 0.026 14.3 0.2 0.045 13.5 0.2 1.4 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system CDC48_N PF02359.13 gi|305663120|ref|YP_003859408.1| - 0.071 13.0 0.1 0.092 12.7 0.0 1.1 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain PTH2 PF01981.11 gi|305663122|ref|YP_003859410.1| - 0.16 11.6 0.0 0.39 10.4 0.0 1.6 1 0 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 DUF2730 PF10805.3 gi|305663123|ref|YP_003859411.1| - 1.5e-05 24.6 3.7 0.0019 17.9 0.6 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) Phlebovirus_NSM PF07246.6 gi|305663123|ref|YP_003859411.1| - 0.00014 21.0 1.2 0.00018 20.7 0.8 1.3 1 0 0 1 1 1 1 Phlebovirus nonstructural protein NS-M NPV_P10 PF05531.7 gi|305663123|ref|YP_003859411.1| - 0.00025 21.2 2.0 0.53 10.5 0.1 2.7 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein TMF_DNA_bd PF12329.3 gi|305663123|ref|YP_003859411.1| - 0.00027 20.6 1.0 0.00052 19.7 0.5 1.6 1 1 0 1 1 1 1 TATA element modulatory factor 1 DNA binding EzrA PF06160.7 gi|305663123|ref|YP_003859411.1| - 0.0011 17.2 0.4 0.002 16.3 0.3 1.5 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Cast PF10174.4 gi|305663123|ref|YP_003859411.1| - 0.0017 16.5 4.7 0.0021 16.2 3.2 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone APG6 PF04111.7 gi|305663123|ref|YP_003859411.1| - 0.0028 16.7 0.2 0.0035 16.4 0.2 1.1 1 0 0 1 1 1 1 Autophagy protein Apg6 DUF1664 PF07889.7 gi|305663123|ref|YP_003859411.1| - 0.0028 17.4 5.9 0.68 9.7 0.8 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|305663123|ref|YP_003859411.1| - 0.0036 15.8 0.6 0.0041 15.6 0.5 1.1 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|305663123|ref|YP_003859411.1| - 0.0051 15.5 2.5 0.01 14.5 1.7 1.5 1 1 0 1 1 1 1 Spc7 kinetochore protein DUF3782 PF12644.2 gi|305663123|ref|YP_003859411.1| - 0.0051 16.5 7.0 0.21 11.3 4.8 2.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) DUF3552 PF12072.3 gi|305663123|ref|YP_003859411.1| - 0.0052 16.0 1.3 0.0052 16.0 0.9 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF3552) Syntaxin PF00804.20 gi|305663123|ref|YP_003859411.1| - 0.0052 16.9 3.2 0.066 13.3 0.5 2.3 1 1 1 2 2 2 2 Syntaxin TBPIP PF07106.8 gi|305663123|ref|YP_003859411.1| - 0.008 15.7 2.0 0.027 14.0 0.8 2.0 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_II PF06009.7 gi|305663123|ref|YP_003859411.1| - 0.0088 15.8 0.9 0.033 13.9 0.5 1.8 1 1 1 2 2 2 1 Laminin Domain II Prefoldin_2 PF01920.15 gi|305663123|ref|YP_003859411.1| - 0.0099 15.6 1.8 0.53 10.0 0.0 2.9 1 1 1 2 2 2 1 Prefoldin subunit DUF1640 PF07798.6 gi|305663123|ref|YP_003859411.1| - 0.011 15.8 3.2 0.028 14.4 2.2 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1640) BLOC1_2 PF10046.4 gi|305663123|ref|YP_003859411.1| - 0.011 15.8 1.3 0.034 14.2 0.8 1.9 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 BRE1 PF08647.6 gi|305663123|ref|YP_003859411.1| - 0.014 15.3 0.6 0.024 14.5 0.4 1.4 1 0 0 1 1 1 0 BRE1 E3 ubiquitin ligase CENP-F_leu_zip PF10473.4 gi|305663123|ref|YP_003859411.1| - 0.015 15.1 1.8 0.061 13.1 0.8 1.8 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2721 PF11026.3 gi|305663123|ref|YP_003859411.1| - 0.015 14.9 0.1 0.031 13.9 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2721) Snapin_Pallidin PF14712.1 gi|305663123|ref|YP_003859411.1| - 0.025 14.8 2.6 0.17 12.2 0.5 2.6 2 1 1 3 3 2 0 Snapin/Pallidin DUF904 PF06005.7 gi|305663123|ref|YP_003859411.1| - 0.025 14.8 0.7 0.25 11.6 0.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Seryl_tRNA_N PF02403.17 gi|305663123|ref|YP_003859411.1| - 0.026 14.5 7.4 0.2 11.6 3.2 3.2 2 1 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain WEMBL PF05701.6 gi|305663123|ref|YP_003859411.1| - 0.028 12.9 1.6 0.045 12.2 1.0 1.4 1 1 0 1 1 1 0 Weak chloroplast movement under blue light DivIC PF04977.10 gi|305663123|ref|YP_003859411.1| - 0.03 13.8 5.6 0.2 11.1 0.4 3.1 1 1 3 4 4 4 0 Septum formation initiator Rootletin PF15035.1 gi|305663123|ref|YP_003859411.1| - 0.038 13.9 0.5 0.35 10.8 0.1 2.2 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion HrpB7 PF09486.5 gi|305663123|ref|YP_003859411.1| - 0.04 13.8 0.5 0.095 12.6 0.1 1.8 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) Baculo_PEP_C PF04513.7 gi|305663123|ref|YP_003859411.1| - 0.04 13.7 0.1 0.063 13.1 0.0 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus bZIP_1 PF00170.16 gi|305663123|ref|YP_003859411.1| - 0.044 13.7 0.4 0.42 10.6 0.0 2.4 2 1 0 2 2 2 0 bZIP transcription factor Reo_sigmaC PF04582.7 gi|305663123|ref|YP_003859411.1| - 0.06 12.5 0.1 0.15 11.1 0.1 1.3 1 1 0 1 1 1 0 Reovirus sigma C capsid protein HSBP1 PF06825.7 gi|305663123|ref|YP_003859411.1| - 0.065 12.8 3.1 0.11 12.1 1.3 2.0 1 1 1 2 2 1 0 Heat shock factor binding protein 1 MtrB PF05440.7 gi|305663123|ref|YP_003859411.1| - 0.071 13.1 0.3 0.27 11.3 0.2 2.0 1 1 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B Tropomyosin_1 PF12718.2 gi|305663123|ref|YP_003859411.1| - 0.078 12.8 1.3 0.11 12.2 0.9 1.3 1 0 0 1 1 1 0 Tropomyosin like MAD PF05557.8 gi|305663123|ref|YP_003859411.1| - 0.083 10.9 5.1 0.075 11.1 1.6 1.8 1 1 1 2 2 2 0 Mitotic checkpoint protein ATG16 PF08614.6 gi|305663123|ref|YP_003859411.1| - 0.083 12.6 2.8 0.14 11.9 1.5 1.5 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) FH2 PF02181.18 gi|305663123|ref|YP_003859411.1| - 0.084 11.7 0.3 0.14 11.0 0.2 1.3 1 1 0 1 1 1 0 Formin Homology 2 Domain DUF16 PF01519.11 gi|305663123|ref|YP_003859411.1| - 0.09 13.0 2.6 0.21 11.8 1.8 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF16 Occludin_ELL PF07303.8 gi|305663123|ref|YP_003859411.1| - 0.097 13.4 2.1 12 6.6 0.7 3.0 1 1 1 2 2 2 0 Occludin homology domain COG2 PF06148.6 gi|305663123|ref|YP_003859411.1| - 0.097 12.5 1.2 0.74 9.6 0.1 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Tweety PF04906.8 gi|305663123|ref|YP_003859411.1| - 0.099 11.0 0.2 0.11 10.8 0.2 1.1 1 0 0 1 1 1 0 Tweety IncA PF04156.9 gi|305663123|ref|YP_003859411.1| - 0.1 12.1 4.9 0.13 11.8 0.4 2.3 1 1 1 2 2 2 0 IncA protein HisG PF01634.13 gi|305663123|ref|YP_003859411.1| - 0.11 12.0 0.7 10 5.6 0.0 2.2 1 1 1 2 2 2 0 ATP phosphoribosyltransferase Allexi_40kDa PF05549.6 gi|305663123|ref|YP_003859411.1| - 0.11 11.7 0.3 0.2 10.9 0.1 1.3 1 1 0 1 1 1 0 Allexivirus 40kDa protein Nup54 PF13874.1 gi|305663123|ref|YP_003859411.1| - 0.14 11.7 0.4 0.61 9.7 0.1 1.9 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 Prefoldin_3 PF13758.1 gi|305663123|ref|YP_003859411.1| - 0.16 11.7 6.5 0.81 9.5 4.3 2.3 1 1 0 1 1 1 0 Prefoldin subunit Gal4_dimer PF03902.8 gi|305663123|ref|YP_003859411.1| - 0.16 11.9 1.9 0.31 11.0 0.2 2.2 2 0 0 2 2 2 0 Gal4-like dimerisation domain Atg14 PF10186.4 gi|305663123|ref|YP_003859411.1| - 0.17 10.8 1.7 0.26 10.2 1.2 1.4 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Phasin PF05597.6 gi|305663123|ref|YP_003859411.1| - 0.17 11.6 2.9 0.93 9.2 1.2 2.6 1 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF972 PF06156.8 gi|305663123|ref|YP_003859411.1| - 0.18 12.1 0.3 1 9.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF972) CorA PF01544.13 gi|305663123|ref|YP_003859411.1| - 0.22 10.5 2.6 0.39 9.7 0.6 2.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein PEARLI-4 PF05278.7 gi|305663123|ref|YP_003859411.1| - 0.28 10.5 4.1 0.61 9.4 2.2 1.8 1 1 1 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF4140 PF13600.1 gi|305663123|ref|YP_003859411.1| - 0.38 11.2 2.9 3.5 8.1 0.7 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) XhlA PF10779.4 gi|305663123|ref|YP_003859411.1| - 0.69 9.8 12.2 0.13 12.2 1.8 3.1 1 1 1 2 2 2 0 Haemolysin XhlA V_ATPase_I PF01496.14 gi|305663123|ref|YP_003859411.1| - 0.7 7.6 6.4 0.18 9.6 2.0 1.6 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Med9 PF07544.8 gi|305663123|ref|YP_003859411.1| - 1 9.1 4.0 2.1 8.1 2.0 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 HalX PF08663.5 gi|305663123|ref|YP_003859411.1| - 1.1 9.2 6.1 7.6 6.6 0.3 3.0 1 1 1 2 2 2 0 HalX domain TSC22 PF01166.13 gi|305663123|ref|YP_003859411.1| - 1.3 9.0 3.9 3.4 7.7 0.9 3.0 1 1 1 3 3 3 0 TSC-22/dip/bun family DUF4164 PF13747.1 gi|305663123|ref|YP_003859411.1| - 2.4 8.3 9.0 1.5 8.9 2.7 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) Transcrip_act PF04949.8 gi|305663123|ref|YP_003859411.1| - 2.6 7.6 11.9 0.8 9.3 2.2 2.1 1 1 1 2 2 2 0 Transcriptional activator LEA_2 PF03168.8 gi|305663126|ref|YP_003859414.1| - 4.6e-07 30.1 0.1 0.0081 16.5 0.0 2.8 2 1 1 3 3 3 2 Late embryogenesis abundant protein AAA_16 PF13191.1 gi|305663128|ref|YP_003859416.1| - 0.0033 17.4 0.0 0.008 16.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663128|ref|YP_003859416.1| - 0.0044 17.1 0.0 0.034 14.3 0.0 2.3 2 1 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|305663128|ref|YP_003859416.1| - 0.005 16.3 0.0 0.022 14.2 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase DUF2258 PF10015.4 gi|305663129|ref|YP_003859417.1| - 0.065 13.0 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2258) AP_endonuc_2 PF01261.19 gi|305663130|ref|YP_003859418.1| - 7.4e-05 22.1 0.0 0.011 15.0 0.0 3.2 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel PaREP1 PF05942.6 gi|305663131|ref|YP_003859419.1| - 7.8e-06 25.7 1.3 1.9e-05 24.5 0.9 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family GPI PF06560.6 gi|305663134|ref|YP_003859422.1| - 0.029 13.4 0.0 0.033 13.2 0.0 1.1 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) YtzH PF14165.1 gi|305663135|ref|YP_003859423.1| - 0.061 13.5 0.2 4.2 7.6 0.0 2.1 2 0 0 2 2 2 0 YtzH-like protein Piwi PF02171.12 gi|305663136|ref|YP_003859424.1| - 0.0001 21.4 0.1 0.00023 20.2 0.1 1.7 1 1 0 1 1 1 1 Piwi domain Pep3_Vps18 PF05131.9 gi|305663138|ref|YP_003859426.1| - 0.076 12.4 0.4 0.35 10.3 0.0 2.1 3 0 0 3 3 3 0 Pep3/Vps18/deep orange family BofA PF07441.6 gi|305663138|ref|YP_003859426.1| - 0.2 11.6 1.4 0.55 10.2 0.3 2.1 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA DUF2672 PF10878.3 gi|305663139|ref|YP_003859427.1| - 2.1 8.1 7.0 0.45 10.2 0.1 3.3 4 0 0 4 4 4 0 Protein of unknown function (DUF2672) HATPase_c_3 PF13589.1 gi|305663140|ref|YP_003859428.1| - 3.3e-11 42.9 0.0 1.2e-10 41.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|305663140|ref|YP_003859428.1| - 0.00033 20.3 0.1 0.0014 18.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HEPPP_synt_1 PF07307.6 gi|305663141|ref|YP_003859429.1| - 0.058 12.8 0.9 0.07 12.5 0.7 1.1 1 0 0 1 1 1 0 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 Replic_Relax PF13814.1 gi|305663141|ref|YP_003859429.1| - 0.086 12.6 0.1 5 6.9 0.0 2.4 3 0 0 3 3 3 0 Replication-relaxation GreA_GreB_N PF03449.10 gi|305663141|ref|YP_003859429.1| - 0.14 12.2 2.3 0.3 11.1 1.6 1.6 1 0 0 1 1 1 0 Transcription elongation factor, N-terminal Metallophos_2 PF12850.2 gi|305663143|ref|YP_003859431.1| - 0.00013 21.8 0.0 0.0031 17.3 0.0 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305663143|ref|YP_003859431.1| - 0.0026 17.1 0.0 0.014 14.8 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase 7TM_GPCR_Srbc PF10316.4 gi|305663145|ref|YP_003859433.1| - 0.023 13.9 1.1 0.026 13.7 0.8 1.0 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Srbc Foamy_virus_ENV PF03408.9 gi|305663145|ref|YP_003859433.1| - 0.55 7.6 2.0 0.6 7.5 1.4 1.0 1 0 0 1 1 1 0 Foamy virus envelope protein Pribosyltran PF00156.22 gi|305663146|ref|YP_003859434.1| - 5.5e-05 22.8 0.4 0.00011 21.8 0.3 1.7 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Ral PF11058.3 gi|305663146|ref|YP_003859434.1| - 0.06 12.7 0.1 8.6 5.8 0.1 2.5 2 0 0 2 2 2 0 Antirestriction protein Ral N6_Mtase PF02384.11 gi|305663147|ref|YP_003859435.1| - 2.2e-20 72.9 0.0 3e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_26 PF13659.1 gi|305663147|ref|YP_003859435.1| - 1.5e-12 47.5 0.0 2.9e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305663147|ref|YP_003859435.1| - 1.8e-07 31.7 0.0 4.4e-07 30.4 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|305663147|ref|YP_003859435.1| - 3.2e-07 30.0 0.0 6.6e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|305663147|ref|YP_003859435.1| - 6e-07 29.1 0.0 1.3e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Eco57I PF07669.6 gi|305663147|ref|YP_003859435.1| - 9.2e-07 29.1 0.0 2.1e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Eco57I restriction-modification methylase TaqI_C PF12950.2 gi|305663147|ref|YP_003859435.1| - 0.00023 20.8 0.0 0.0013 18.4 0.0 2.2 2 0 0 2 2 2 1 TaqI-like C-terminal specificity domain MTS PF05175.9 gi|305663147|ref|YP_003859435.1| - 0.0008 18.8 0.0 0.0013 18.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|305663147|ref|YP_003859435.1| - 0.00098 19.4 0.0 0.0025 18.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305663147|ref|YP_003859435.1| - 0.032 14.7 0.0 0.077 13.4 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305663147|ref|YP_003859435.1| - 0.051 14.0 0.0 0.15 12.5 0.0 1.9 1 0 0 1 1 1 0 Methyltransferase domain RE_AccI PF09545.5 gi|305663148|ref|YP_003859436.1| - 1.5e-16 59.9 0.2 6.4e-11 41.4 0.0 2.0 1 1 1 2 2 2 2 AccI restriction endonuclease DnaB PF00772.16 gi|305663148|ref|YP_003859436.1| - 0.11 12.3 0.1 19 5.2 0.0 2.2 2 0 0 2 2 2 0 DnaB-like helicase N terminal domain Lactamase_B_2 PF12706.2 gi|305663149|ref|YP_003859437.1| - 5.1e-15 55.5 0.0 3.5e-13 49.5 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|305663149|ref|YP_003859437.1| - 3.1e-09 36.7 1.7 1.1e-08 35.0 1.2 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|305663149|ref|YP_003859437.1| - 7.8e-06 25.6 0.1 2.1e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|305663149|ref|YP_003859437.1| - 0.0007 19.3 0.0 0.0027 17.4 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DRMBL PF07522.9 gi|305663149|ref|YP_003859437.1| - 0.0054 16.7 0.0 0.0099 15.9 0.0 1.4 1 0 0 1 1 1 1 DNA repair metallo-beta-lactamase PDEase_II PF02112.10 gi|305663149|ref|YP_003859437.1| - 0.18 10.6 0.6 0.34 9.7 0.2 1.5 2 0 0 2 2 2 0 cAMP phosphodiesterases class-II DUF3883 PF13020.1 gi|305663150|ref|YP_003859438.1| - 3e-21 74.9 0.2 4.8e-20 71.1 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) SNF2_N PF00176.18 gi|305663150|ref|YP_003859438.1| - 3.4e-20 72.0 0.0 6.9e-20 71.0 0.0 1.5 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|305663150|ref|YP_003859438.1| - 6.7e-12 45.1 0.0 1.8e-11 43.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|305663150|ref|YP_003859438.1| - 2.7e-09 37.1 0.0 1.6e-08 34.6 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|305663150|ref|YP_003859438.1| - 6.4e-08 32.2 0.0 4.2e-07 29.6 0.0 2.2 1 1 0 1 1 1 1 DEAD/DEAH box helicase AAA PF00004.24 gi|305663150|ref|YP_003859438.1| - 0.00056 20.1 0.1 0.033 14.3 0.0 3.4 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.4 gi|305663150|ref|YP_003859438.1| - 0.0052 15.8 0.0 0.0082 15.1 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|305663150|ref|YP_003859438.1| - 0.059 12.1 0.1 0.28 9.9 0.1 2.0 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF499 PF04465.7 gi|305663152|ref|YP_003859440.1| - 1.3e-152 509.7 10.9 1.7e-152 509.3 7.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF499) DUF1156 PF06634.7 gi|305663153|ref|YP_003859441.1| - 8.1e-19 67.1 0.9 2.8e-18 65.4 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1156) Methyltransf_26 PF13659.1 gi|305663153|ref|YP_003859441.1| - 9e-11 41.8 0.0 0.00017 21.5 0.1 3.6 3 1 0 3 3 3 2 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|305663153|ref|YP_003859441.1| - 4.2e-07 29.5 0.0 0.0025 17.2 0.0 2.5 2 0 0 2 2 2 2 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|305663153|ref|YP_003859441.1| - 0.00092 18.8 0.0 0.9 9.0 0.0 2.5 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 MFS_3 PF05977.8 gi|305663153|ref|YP_003859441.1| - 0.0073 14.4 0.1 0.014 13.5 0.0 1.3 1 0 0 1 1 1 1 Transmembrane secretion effector zinc_ribbon_4 PF13717.1 gi|305663153|ref|YP_003859441.1| - 0.13 11.9 0.9 7.2 6.3 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305663153|ref|YP_003859441.1| - 0.17 11.4 0.9 11 5.6 0.0 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305663153|ref|YP_003859441.1| - 0.18 11.3 2.5 3.2 7.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|305663153|ref|YP_003859441.1| - 0.37 10.0 1.3 1.8 7.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain EVE PF01878.13 gi|305663154|ref|YP_003859442.1| - 8.4e-11 42.0 0.0 1.1e-10 41.7 0.0 1.1 1 0 0 1 1 1 1 EVE domain OKR_DC_1_N PF03709.10 gi|305663155|ref|YP_003859443.1| - 0.017 15.1 0.0 0.024 14.7 0.0 1.2 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Gly-zipper_Omp PF13488.1 gi|305663156|ref|YP_003859444.1| - 0.00017 21.1 9.3 0.00026 20.5 6.5 1.3 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_OmpA PF13436.1 gi|305663156|ref|YP_003859444.1| - 0.00021 20.9 1.8 0.00021 20.9 0.5 1.5 1 1 1 2 2 2 1 Glycine-zipper containing OmpA-like membrane domain TraT PF05818.7 gi|305663156|ref|YP_003859444.1| - 0.0063 15.9 0.4 0.0064 15.9 0.3 1.1 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein DUF2453 PF10507.4 gi|305663156|ref|YP_003859444.1| - 0.044 13.6 0.1 0.046 13.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2453) DUF456 PF04306.8 gi|305663156|ref|YP_003859444.1| - 0.12 12.4 5.6 0.15 12.0 3.9 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF456) Ribosomal_L19e PF01280.15 gi|305663156|ref|YP_003859444.1| - 0.13 12.0 0.1 0.16 11.7 0.1 1.1 1 0 0 1 1 1 0 Ribosomal protein L19e Gly-zipper_YMGG PF13441.1 gi|305663156|ref|YP_003859444.1| - 0.18 11.3 11.4 0.64 9.5 7.7 1.8 1 1 0 1 1 1 0 YMGG-like Gly-zipper DUF1269 PF06897.7 gi|305663156|ref|YP_003859444.1| - 0.84 9.6 4.8 2.2 8.3 3.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1269) Bacteriocin_IIc PF10439.4 gi|305663156|ref|YP_003859444.1| - 1.4 9.0 9.2 2.1 8.5 6.4 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Rick_17kDa_Anti PF05433.10 gi|305663156|ref|YP_003859444.1| - 1.5 8.5 12.8 3.6 7.3 8.8 1.8 1 1 0 1 1 1 0 Glycine zipper 2TM domain Romo1 PF10247.4 gi|305663156|ref|YP_003859444.1| - 3.2 7.9 11.1 45 4.3 7.7 2.1 1 1 0 1 1 1 0 Reactive mitochondrial oxygen species modulator 1 Ndc80_HEC PF03801.8 gi|305663157|ref|YP_003859445.1| - 0.058 12.8 0.3 0.77 9.1 0.1 2.4 1 1 1 2 2 2 0 HEC/Ndc80p family DUF226 PF02890.9 gi|305663158|ref|YP_003859446.1| - 0.0067 16.2 1.8 0.31 10.8 0.1 2.3 1 1 1 2 2 2 2 Borrelia family of unknown function DUF226 eIF3_p135 PF12807.2 gi|305663158|ref|YP_003859446.1| - 0.077 12.9 0.7 0.83 9.5 0.0 2.1 1 1 1 2 2 2 0 Translation initiation factor eIF3 subunit 135 Glyco_hydro_101 PF12905.2 gi|305663159|ref|YP_003859447.1| - 0.093 11.3 0.0 0.11 11.1 0.0 1.1 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase DUF2418 PF10332.4 gi|305663159|ref|YP_003859447.1| - 0.21 11.9 1.8 0.24 11.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2418) 7TM-7TMR_HD PF07698.6 gi|305663163|ref|YP_003859451.1| - 0.0011 18.4 5.4 0.0011 18.4 3.7 1.8 1 1 1 2 2 2 1 7TM receptor with intracellular HD hydrolase BioY PF02632.9 gi|305663163|ref|YP_003859451.1| - 0.012 15.3 3.9 0.015 14.9 2.7 1.1 1 0 0 1 1 1 0 BioY family DUF1113 PF06541.6 gi|305663163|ref|YP_003859451.1| - 0.02 14.6 1.7 0.02 14.6 1.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1113) YoqO PF14037.1 gi|305663163|ref|YP_003859451.1| - 0.12 12.4 2.7 0.19 11.8 1.8 1.5 1 1 0 1 1 1 0 YoqO-like protein BofA PF07441.6 gi|305663163|ref|YP_003859451.1| - 0.35 10.8 10.8 1.6 8.7 0.1 2.4 2 0 0 2 2 2 0 SigmaK-factor processing regulatory protein BofA UbiA PF01040.13 gi|305663163|ref|YP_003859451.1| - 0.36 10.0 8.7 0.46 9.6 0.3 2.0 2 0 0 2 2 2 0 UbiA prenyltransferase family DUF2304 PF10066.4 gi|305663163|ref|YP_003859451.1| - 0.77 9.6 5.7 1.3 8.9 4.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) CAAD PF14159.1 gi|305663163|ref|YP_003859451.1| - 3.9 7.1 6.1 0.52 9.9 0.1 2.2 1 1 2 3 3 3 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase DUF1803 PF08820.5 gi|305663164|ref|YP_003859452.1| - 0.0088 15.7 0.4 2.4 7.9 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF1803) Rep_fac_C PF08542.6 gi|305663164|ref|YP_003859452.1| - 0.12 12.3 0.8 9.3 6.3 0.0 3.5 3 1 0 3 3 3 0 Replication factor C C-terminal domain DUF4095 PF13338.1 gi|305663164|ref|YP_003859452.1| - 0.16 12.1 0.1 0.41 10.8 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4095) Transglut_core PF01841.14 gi|305663167|ref|YP_003859455.1| - 0.027 14.6 0.0 0.028 14.6 0.0 1.0 1 0 0 1 1 1 0 Transglutaminase-like superfamily PIN PF01850.16 gi|305663170|ref|YP_003859458.1| - 1.1e-09 38.6 0.1 3.1e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 PIN domain ABC2_membrane_3 PF12698.2 gi|305663172|ref|YP_003859460.1| - 0.00015 20.9 17.2 0.00015 20.9 11.9 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|305663173|ref|YP_003859461.1| - 4.8e-26 91.6 0.0 7.3e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663173|ref|YP_003859461.1| - 2.6e-14 53.8 0.1 2.7e-06 27.5 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|305663173|ref|YP_003859461.1| - 6.7e-06 26.5 0.0 1.5e-05 25.4 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_29 PF13555.1 gi|305663173|ref|YP_003859461.1| - 0.00026 20.4 0.0 0.00046 19.6 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305663173|ref|YP_003859461.1| - 0.00078 19.4 0.0 0.0022 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663173|ref|YP_003859461.1| - 0.0023 18.0 0.1 0.018 15.1 0.0 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|305663173|ref|YP_003859461.1| - 0.0025 17.1 0.2 0.016 14.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|305663173|ref|YP_003859461.1| - 0.0029 17.3 0.1 0.009 15.7 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|305663173|ref|YP_003859461.1| - 0.0034 18.1 0.5 0.0063 17.3 0.3 1.9 1 1 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|305663173|ref|YP_003859461.1| - 0.0035 16.2 0.1 0.0074 15.2 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_10 PF12846.2 gi|305663173|ref|YP_003859461.1| - 0.0065 15.9 0.1 0.012 15.0 0.1 1.5 1 0 0 1 1 1 1 AAA-like domain MobB PF03205.9 gi|305663173|ref|YP_003859461.1| - 0.0075 15.9 0.1 0.017 14.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MutS_V PF00488.16 gi|305663173|ref|YP_003859461.1| - 0.0077 15.6 0.0 0.017 14.5 0.0 1.5 2 0 0 2 2 2 1 MutS domain V AAA_15 PF13175.1 gi|305663173|ref|YP_003859461.1| - 0.016 14.2 0.0 2 7.3 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|305663173|ref|YP_003859461.1| - 0.018 14.9 0.1 0.066 13.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain Arch_ATPase PF01637.13 gi|305663173|ref|YP_003859461.1| - 0.026 14.2 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase AAA_5 PF07728.9 gi|305663173|ref|YP_003859461.1| - 0.028 14.1 0.1 0.44 10.2 0.0 2.6 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|305663173|ref|YP_003859461.1| - 0.039 13.8 0.1 1.5 8.6 0.1 2.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305663173|ref|YP_003859461.1| - 0.044 13.4 0.1 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Adeno_IVa2 PF02456.10 gi|305663173|ref|YP_003859461.1| - 0.053 12.1 0.0 0.077 11.6 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein AAA PF00004.24 gi|305663173|ref|YP_003859461.1| - 0.063 13.4 0.0 0.19 11.9 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|305663173|ref|YP_003859461.1| - 0.068 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|305663173|ref|YP_003859461.1| - 0.084 13.1 0.2 0.92 9.8 0.2 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663173|ref|YP_003859461.1| - 0.089 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305663173|ref|YP_003859461.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|305663173|ref|YP_003859461.1| - 0.17 10.3 0.0 0.25 9.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain UPF0175 PF03683.8 gi|305663177|ref|YP_003859465.1| - 3.9e-08 32.6 0.0 8.1e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0175) DNA_ligase_A_M PF01068.16 gi|305663177|ref|YP_003859465.1| - 0.025 13.9 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 ATP dependent DNA ligase domain SBP_bac_7 PF03480.8 gi|305663177|ref|YP_003859465.1| - 0.078 12.0 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein, family 7 DUF3368 PF11848.3 gi|305663178|ref|YP_003859466.1| - 0.0013 18.2 0.1 0.0026 17.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) KaiC PF06745.8 gi|305663178|ref|YP_003859466.1| - 0.016 14.3 0.2 0.028 13.5 0.1 1.5 2 0 0 2 2 2 0 KaiC PIN_4 PF13638.1 gi|305663178|ref|YP_003859466.1| - 0.073 13.1 0.7 1.3 9.1 0.1 2.2 1 1 1 2 2 2 0 PIN domain PgaD PF13994.1 gi|305663178|ref|YP_003859466.1| - 0.11 11.9 0.0 1.1 8.7 0.0 2.1 2 0 0 2 2 2 0 PgaD-like protein MS_channel PF00924.13 gi|305663179|ref|YP_003859467.1| - 2e-55 187.3 1.3 2.7e-55 186.9 0.9 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel PDDEXK_5 PF11645.3 gi|305663179|ref|YP_003859467.1| - 0.024 14.2 0.1 0.041 13.5 0.1 1.3 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease FtsX PF02687.16 gi|305663179|ref|YP_003859467.1| - 0.71 9.6 12.7 1.9 8.2 2.7 2.3 1 1 1 2 2 2 0 FtsX-like permease family DUF432 PF04254.8 gi|305663180|ref|YP_003859468.1| - 6.6e-27 93.8 0.1 9e-27 93.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF432) DUF1136 PF06582.7 gi|305663181|ref|YP_003859469.1| - 0.083 12.5 0.1 0.17 11.5 0.1 1.5 1 0 0 1 1 1 0 Repeat of unknown function (DUF1136) ABC_tran PF00005.22 gi|305663182|ref|YP_003859470.1| - 2.1e-24 86.3 0.0 3e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663182|ref|YP_003859470.1| - 3e-10 40.5 0.0 1.7e-08 34.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305663182|ref|YP_003859470.1| - 2e-08 33.7 0.0 3.7e-05 23.0 0.0 2.5 3 0 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305663182|ref|YP_003859470.1| - 0.00026 21.0 0.0 0.00043 20.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|305663182|ref|YP_003859470.1| - 0.00034 20.5 0.0 0.00083 19.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|305663182|ref|YP_003859470.1| - 0.0011 18.0 0.0 0.0019 17.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|305663182|ref|YP_003859470.1| - 0.0012 18.6 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|305663182|ref|YP_003859470.1| - 0.0022 17.7 0.0 0.11 12.2 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_29 PF13555.1 gi|305663182|ref|YP_003859470.1| - 0.0023 17.3 0.1 0.0044 16.5 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA PF00004.24 gi|305663182|ref|YP_003859470.1| - 0.0025 18.0 0.1 0.004 17.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|305663182|ref|YP_003859470.1| - 0.013 15.7 0.1 0.022 15.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|305663182|ref|YP_003859470.1| - 0.014 15.4 0.0 0.04 14.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305663182|ref|YP_003859470.1| - 0.023 13.9 0.1 0.035 13.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|305663182|ref|YP_003859470.1| - 0.024 14.0 0.5 0.31 10.4 0.4 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663182|ref|YP_003859470.1| - 0.033 13.8 0.2 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|305663182|ref|YP_003859470.1| - 0.039 14.7 1.0 0.12 13.2 0.7 2.0 2 1 0 2 2 1 0 AAA domain AAA_19 PF13245.1 gi|305663182|ref|YP_003859470.1| - 0.039 13.6 0.0 0.11 12.2 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|305663182|ref|YP_003859470.1| - 0.053 12.9 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|305663182|ref|YP_003859470.1| - 0.054 13.3 0.0 0.18 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|305663182|ref|YP_003859470.1| - 0.056 13.4 0.0 0.16 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|305663182|ref|YP_003859470.1| - 0.061 13.2 2.0 0.49 10.3 0.3 2.6 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit DUF3584 PF12128.3 gi|305663182|ref|YP_003859470.1| - 0.067 10.5 0.1 0.094 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) UPF0079 PF02367.12 gi|305663182|ref|YP_003859470.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 PduV-EutP PF10662.4 gi|305663182|ref|YP_003859470.1| - 0.068 12.6 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_30 PF13604.1 gi|305663182|ref|YP_003859470.1| - 0.072 12.6 0.2 0.21 11.1 0.0 1.8 3 0 0 3 3 1 0 AAA domain Gtr1_RagA PF04670.7 gi|305663182|ref|YP_003859470.1| - 0.081 12.0 0.0 0.12 11.4 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region Miro PF08477.8 gi|305663182|ref|YP_003859470.1| - 0.091 13.2 0.0 0.15 12.5 0.0 1.3 1 0 0 1 1 1 0 Miro-like protein DEAD PF00270.24 gi|305663182|ref|YP_003859470.1| - 0.12 11.8 0.1 2.7 7.4 0.1 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_5 PF07728.9 gi|305663182|ref|YP_003859470.1| - 0.13 11.9 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|305663182|ref|YP_003859470.1| - 0.16 11.3 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.16 gi|305663182|ref|YP_003859470.1| - 0.16 11.1 0.0 0.59 9.2 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI T2SE PF00437.15 gi|305663182|ref|YP_003859470.1| - 0.2 10.5 0.3 0.35 9.7 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|305663182|ref|YP_003859470.1| - 0.21 10.9 0.5 2.1 7.6 0.1 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein Amastin PF07344.6 gi|305663183|ref|YP_003859471.1| - 8.9 5.9 11.1 35 3.9 7.7 2.0 1 1 0 1 1 1 0 Amastin surface glycoprotein Mrr_cat PF04471.7 gi|305663185|ref|YP_003859473.1| - 3.3e-13 49.4 0.6 6.2e-13 48.5 0.1 1.7 2 0 0 2 2 1 1 Restriction endonuclease NERD PF08378.6 gi|305663185|ref|YP_003859473.1| - 4.8e-07 30.0 0.5 1.3e-06 28.6 0.3 1.8 1 1 0 1 1 1 1 Nuclease-related domain TrmB PF01978.14 gi|305663185|ref|YP_003859473.1| - 6.5e-06 25.7 0.1 1.9e-05 24.2 0.1 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Sulfolobus_pRN PF05584.6 gi|305663185|ref|YP_003859473.1| - 1.2e-05 25.1 0.2 3e-05 23.8 0.2 1.6 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TFIIE_alpha PF02002.12 gi|305663185|ref|YP_003859473.1| - 0.00015 21.1 0.6 0.016 14.6 0.1 2.6 2 0 0 2 2 2 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|305663185|ref|YP_003859473.1| - 0.00027 20.6 0.0 0.00056 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain DUF3489 PF11994.3 gi|305663185|ref|YP_003859473.1| - 0.00034 20.4 0.1 0.00069 19.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3489) MarR_2 PF12802.2 gi|305663185|ref|YP_003859473.1| - 0.00059 19.4 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|305663185|ref|YP_003859473.1| - 0.0013 18.3 0.0 0.0022 17.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|305663185|ref|YP_003859473.1| - 0.0013 18.4 0.1 0.0024 17.5 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|305663185|ref|YP_003859473.1| - 0.0016 17.8 0.1 0.0033 16.7 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|305663185|ref|YP_003859473.1| - 0.0021 18.3 0.2 0.0061 16.8 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|305663185|ref|YP_003859473.1| - 0.0021 18.1 0.4 0.0048 16.9 0.3 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_36 PF13730.1 gi|305663185|ref|YP_003859473.1| - 0.022 14.8 0.1 0.052 13.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3300 PF11737.3 gi|305663185|ref|YP_003859473.1| - 0.023 13.9 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3300) Rrf2 PF02082.15 gi|305663185|ref|YP_003859473.1| - 0.031 14.3 0.1 0.27 11.3 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulator PadR PF03551.9 gi|305663185|ref|YP_003859473.1| - 0.059 13.1 0.1 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_9 PF08221.6 gi|305663185|ref|YP_003859473.1| - 0.074 12.9 0.0 0.26 11.1 0.0 1.9 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_34 PF13601.1 gi|305663185|ref|YP_003859473.1| - 0.079 13.0 0.1 0.18 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_15 PF12324.3 gi|305663185|ref|YP_003859473.1| - 0.083 12.5 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase DUF4143 PF13635.1 gi|305663185|ref|YP_003859473.1| - 0.11 12.6 2.3 0.15 12.2 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4143) DUF4065 PF13274.1 gi|305663186|ref|YP_003859474.1| - 2.4e-11 44.2 0.0 6.4e-11 42.9 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) DUF496 PF04363.7 gi|305663186|ref|YP_003859474.1| - 0.0086 15.8 0.5 0.032 14.0 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF496) YtxC PF08812.6 gi|305663186|ref|YP_003859474.1| - 0.017 14.6 0.1 0.081 12.4 0.0 2.0 2 0 0 2 2 2 0 YtxC-like family ASL_C PF08328.6 gi|305663192|ref|YP_003859480.1| - 0.072 12.9 0.2 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminal DUF4065 PF13274.1 gi|305663193|ref|YP_003859481.1| - 4.1e-13 49.9 0.0 7.6e-13 49.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) IRF-3 PF10401.4 gi|305663194|ref|YP_003859482.1| - 0.074 12.6 0.0 0.097 12.2 0.0 1.2 1 0 0 1 1 1 0 Interferon-regulatory factor 3 PM0188 PF11477.3 gi|305663194|ref|YP_003859482.1| - 0.088 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 Sialyltransferase PMO188 SH2_2 PF14633.1 gi|305663196|ref|YP_003859484.1| - 0.094 11.7 0.0 0.1 11.6 0.0 1.0 1 0 0 1 1 1 0 SH2 domain AAA_21 PF13304.1 gi|305663198|ref|YP_003859486.1| - 7.7e-18 65.4 20.2 4.8e-14 53.0 0.1 2.9 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|305663198|ref|YP_003859486.1| - 3.3e-11 42.8 18.1 1.3e-10 40.8 0.0 3.2 3 1 0 3 3 3 1 AAA ATPase domain DUF2813 PF11398.3 gi|305663198|ref|YP_003859486.1| - 0.00045 19.4 1.0 0.038 13.0 0.0 2.9 3 0 0 3 3 3 1 Protein of unknown function (DUF2813) AAA_23 PF13476.1 gi|305663198|ref|YP_003859486.1| - 0.0027 18.0 0.3 0.0027 18.0 0.2 2.4 1 1 1 2 2 2 1 AAA domain CDT1 PF08839.6 gi|305663198|ref|YP_003859486.1| - 0.0065 16.4 1.8 0.011 15.7 1.3 1.3 1 0 0 1 1 1 1 DNA replication factor CDT1 like SMC_N PF02463.14 gi|305663198|ref|YP_003859486.1| - 0.028 13.6 0.0 0.064 12.4 0.0 1.6 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|305663198|ref|YP_003859486.1| - 0.055 13.6 0.9 0.86 9.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF86 PF01934.12 gi|305663199|ref|YP_003859487.1| - 4e-18 65.1 0.3 6.9e-18 64.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|305663199|ref|YP_003859487.1| - 7.7e-05 22.9 0.6 0.00029 21.0 0.1 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain Arch_ATPase PF01637.13 gi|305663200|ref|YP_003859488.1| - 2.8e-54 184.3 0.2 4.8e-54 183.5 0.1 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663200|ref|YP_003859488.1| - 0.00017 21.6 0.0 0.00076 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|305663200|ref|YP_003859488.1| - 0.00032 19.6 0.0 0.00088 18.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_22 PF13401.1 gi|305663200|ref|YP_003859488.1| - 0.005 16.9 0.0 0.02 15.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663200|ref|YP_003859488.1| - 0.0068 16.6 0.0 0.025 14.7 0.0 2.0 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305663200|ref|YP_003859488.1| - 0.009 16.8 0.6 0.12 13.1 0.0 2.7 1 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|305663200|ref|YP_003859488.1| - 0.017 15.0 0.1 0.056 13.3 0.0 1.9 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|305663200|ref|YP_003859488.1| - 0.036 14.2 0.0 0.13 12.4 0.0 2.0 1 1 1 2 2 2 0 RNA helicase NACHT PF05729.7 gi|305663200|ref|YP_003859488.1| - 0.037 13.6 0.0 0.086 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.1 gi|305663200|ref|YP_003859488.1| - 0.055 13.0 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|305663200|ref|YP_003859488.1| - 0.073 12.6 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|305663200|ref|YP_003859488.1| - 0.1 12.9 0.1 0.42 10.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|305663200|ref|YP_003859488.1| - 0.16 11.1 0.0 0.47 9.5 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Adeno_E3_14_5 PF04834.7 gi|305663201|ref|YP_003859489.1| - 0.0016 18.8 0.2 0.0042 17.4 0.1 1.7 1 0 0 1 1 1 1 Early E3 14.5 kDa protein DUF2561 PF10812.3 gi|305663201|ref|YP_003859489.1| - 0.0016 18.0 0.4 0.0024 17.5 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2561) DUF2834 PF11196.3 gi|305663201|ref|YP_003859489.1| - 0.0095 16.0 0.6 0.021 14.9 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2834) Rifin_STEVOR PF02009.11 gi|305663201|ref|YP_003859489.1| - 0.027 14.1 6.0 0.05 13.2 4.1 1.3 1 0 0 1 1 1 0 Rifin/stevor family Oxidored_q2 PF00420.19 gi|305663201|ref|YP_003859489.1| - 0.14 11.7 5.0 1.2 8.7 1.0 2.3 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FtsX PF02687.16 gi|305663201|ref|YP_003859489.1| - 0.59 9.8 8.1 1.9 8.2 1.5 2.5 2 0 0 2 2 2 0 FtsX-like permease family DUF3139 PF11337.3 gi|305663201|ref|YP_003859489.1| - 6.1 7.1 10.2 5.3 7.3 0.8 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) ASFV_J13L PF05568.6 gi|305663201|ref|YP_003859489.1| - 7 6.1 6.1 0.96 8.9 1.0 1.8 2 0 0 2 2 2 0 African swine fever virus J13L protein VirB3 PF05101.8 gi|305663201|ref|YP_003859489.1| - 8.9 6.3 6.5 2.6 8.1 2.1 1.8 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein Arch_ATPase PF01637.13 gi|305663202|ref|YP_003859490.1| - 1.6e-46 158.9 0.0 2.3e-46 158.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|305663202|ref|YP_003859490.1| - 0.00046 19.1 0.0 0.0019 17.1 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain AAA_16 PF13191.1 gi|305663202|ref|YP_003859490.1| - 0.0067 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|305663202|ref|YP_003859490.1| - 0.007 16.5 0.0 0.018 15.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SieB PF14163.1 gi|305663202|ref|YP_003859490.1| - 0.0076 15.8 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Superinfection exclusion protein B NACHT PF05729.7 gi|305663202|ref|YP_003859490.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.1 gi|305663202|ref|YP_003859490.1| - 0.018 14.6 0.0 0.025 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|305663202|ref|YP_003859490.1| - 0.027 14.6 0.0 0.074 13.2 0.0 1.7 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.9 gi|305663202|ref|YP_003859490.1| - 0.043 12.7 0.0 0.058 12.3 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_22 PF13401.1 gi|305663202|ref|YP_003859490.1| - 0.047 13.8 0.0 0.1 12.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305663202|ref|YP_003859490.1| - 0.073 12.9 0.1 0.22 11.4 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|305663202|ref|YP_003859490.1| - 0.13 13.0 0.1 0.67 10.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|305663203|ref|YP_003859491.1| - 0.026 14.4 0.1 0.03 14.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|305663204|ref|YP_003859492.1| - 1.2e-54 185.4 0.3 1.8e-54 184.9 0.0 1.4 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663204|ref|YP_003859492.1| - 4.7e-06 26.7 0.1 2.3e-05 24.4 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|305663204|ref|YP_003859492.1| - 0.00031 20.9 0.0 0.0017 18.5 0.0 2.2 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) SieB PF14163.1 gi|305663204|ref|YP_003859492.1| - 0.0019 17.8 0.9 0.0032 17.0 0.6 1.3 1 0 0 1 1 1 1 Superinfection exclusion protein B NB-ARC PF00931.17 gi|305663204|ref|YP_003859492.1| - 0.012 14.4 0.0 0.027 13.3 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_14 PF13173.1 gi|305663204|ref|YP_003859492.1| - 0.014 15.2 0.1 0.057 13.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|305663204|ref|YP_003859492.1| - 0.018 14.6 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663204|ref|YP_003859492.1| - 0.03 13.9 0.0 0.057 13.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|305663204|ref|YP_003859492.1| - 0.06 13.2 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|305663204|ref|YP_003859492.1| - 0.063 13.4 0.0 0.15 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|305663204|ref|YP_003859492.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|305663204|ref|YP_003859492.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase EcoEI_R_C PF08463.5 gi|305663205|ref|YP_003859493.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.0 1 0 0 1 1 1 0 EcoEI R protein C-terminal Antitoxin-MazE PF04014.13 gi|305663206|ref|YP_003859494.1| - 3.3e-11 42.6 0.3 5.8e-11 41.8 0.2 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MFS_1 PF07690.11 gi|305663207|ref|YP_003859495.1| - 6.9e-23 80.9 50.6 6.9e-23 80.9 35.1 1.5 1 1 1 2 2 2 2 Major Facilitator Superfamily ABC2_membrane_3 PF12698.2 gi|305663208|ref|YP_003859496.1| - 1.3e-35 123.0 20.4 1.6e-35 122.7 14.1 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|305663208|ref|YP_003859496.1| - 2.7e-21 75.6 18.1 1.9e-20 72.9 9.2 2.4 2 0 0 2 2 2 2 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|305663208|ref|YP_003859496.1| - 1.1e-18 67.0 12.1 2.9e-18 65.7 8.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305663208|ref|YP_003859496.1| - 1.4e-08 34.2 31.4 2e-08 33.6 21.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein CytB6-F_Fe-S PF08802.5 gi|305663208|ref|YP_003859496.1| - 0.63 10.0 4.0 0.44 10.5 0.5 2.4 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit FtsX PF02687.16 gi|305663208|ref|YP_003859496.1| - 4.5 7.0 30.0 0.5 10.1 2.3 3.5 3 1 0 3 3 3 0 FtsX-like permease family ABC_tran PF00005.22 gi|305663209|ref|YP_003859497.1| - 1.3e-27 96.8 0.0 2.2e-27 96.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663209|ref|YP_003859497.1| - 1.2e-14 55.0 0.1 1.8e-12 47.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|305663209|ref|YP_003859497.1| - 0.00049 20.5 0.0 0.00094 19.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|305663209|ref|YP_003859497.1| - 0.0014 17.8 0.0 0.72 9.0 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|305663209|ref|YP_003859497.1| - 0.0042 16.3 0.0 0.0069 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|305663209|ref|YP_003859497.1| - 0.0046 16.4 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain KdpD PF02702.12 gi|305663209|ref|YP_003859497.1| - 0.0073 15.4 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain AAA_13 PF13166.1 gi|305663209|ref|YP_003859497.1| - 0.01 14.3 0.0 0.77 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|305663209|ref|YP_003859497.1| - 0.015 15.6 0.5 1.1 9.5 0.3 2.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|305663209|ref|YP_003859497.1| - 0.024 14.9 0.0 0.051 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305663209|ref|YP_003859497.1| - 0.035 13.5 0.0 0.47 9.8 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|305663209|ref|YP_003859497.1| - 0.046 13.3 0.0 1.9 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|305663209|ref|YP_003859497.1| - 0.087 12.8 0.0 0.38 10.7 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|305663209|ref|YP_003859497.1| - 0.095 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA PF00004.24 gi|305663209|ref|YP_003859497.1| - 0.1 12.7 0.3 3.1 8.0 0.2 2.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|305663209|ref|YP_003859497.1| - 0.11 12.4 0.0 5.6 6.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|305663209|ref|YP_003859497.1| - 0.15 11.9 0.3 1.1 9.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|305663209|ref|YP_003859497.1| - 0.15 11.9 0.0 1.2 9.0 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Dynamin_N PF00350.18 gi|305663209|ref|YP_003859497.1| - 0.18 11.5 0.4 0.48 10.2 0.1 1.7 2 0 0 2 2 2 0 Dynamin family HTH_34 PF13601.1 gi|305663211|ref|YP_003859499.1| - 2.3e-14 53.1 0.0 3e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|305663211|ref|YP_003859499.1| - 5.6e-08 32.3 0.0 1.2e-07 31.2 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|305663211|ref|YP_003859499.1| - 3.2e-06 26.8 0.0 5.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|305663211|ref|YP_003859499.1| - 0.00013 21.2 0.0 0.00036 19.8 0.0 1.8 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|305663211|ref|YP_003859499.1| - 0.00057 19.4 0.0 0.00084 18.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HxlR PF01638.12 gi|305663211|ref|YP_003859499.1| - 0.0022 17.5 0.2 0.0029 17.1 0.1 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR PF01047.17 gi|305663211|ref|YP_003859499.1| - 0.0036 16.9 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|305663211|ref|YP_003859499.1| - 0.0073 16.0 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.14 gi|305663211|ref|YP_003859499.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.6 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|305663211|ref|YP_003859499.1| - 0.028 14.0 0.1 0.22 11.1 0.0 2.3 2 1 1 3 3 3 0 HTH domain B-block_TFIIIC PF04182.7 gi|305663211|ref|YP_003859499.1| - 0.098 12.5 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|305663211|ref|YP_003859499.1| - 0.12 12.5 0.0 0.48 10.5 0.0 1.8 1 1 1 2 2 2 0 Transcriptional regulator HTH_27 PF13463.1 gi|305663211|ref|YP_003859499.1| - 0.12 12.7 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain AAA_21 PF13304.1 gi|305663212|ref|YP_003859500.1| - 8.4e-28 98.1 0.1 2.2e-15 57.3 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|305663212|ref|YP_003859500.1| - 2.9e-17 62.8 2.0 1.6e-10 40.6 0.0 2.6 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|305663212|ref|YP_003859500.1| - 6.2e-13 49.5 0.0 9.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305663212|ref|YP_003859500.1| - 8e-12 44.8 0.2 1e-10 41.2 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF2813 PF11398.3 gi|305663212|ref|YP_003859500.1| - 7.5e-07 28.5 0.7 0.0012 18.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2813) AAA_22 PF13401.1 gi|305663212|ref|YP_003859500.1| - 0.00039 20.5 0.0 0.0097 16.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain ABC_tran PF00005.22 gi|305663212|ref|YP_003859500.1| - 0.0025 18.1 0.0 0.49 10.6 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_29 PF13555.1 gi|305663212|ref|YP_003859500.1| - 0.031 13.7 0.0 0.063 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|305663212|ref|YP_003859500.1| - 0.085 11.4 0.1 0.77 8.2 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|305663212|ref|YP_003859500.1| - 0.13 12.4 0.0 2.6 8.2 0.0 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF553 PF04473.7 gi|305663214|ref|YP_003859502.1| - 8.4e-14 51.1 0.0 1.2e-12 47.3 0.0 2.2 1 1 0 1 1 1 1 Transglutaminase-like domain ASL_C PF08328.6 gi|305663214|ref|YP_003859502.1| - 0.0073 16.1 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal Asp_protease_2 PF13650.1 gi|305663215|ref|YP_003859503.1| - 7.1e-06 26.4 0.0 9.7e-06 25.9 0.0 1.3 1 1 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|305663215|ref|YP_003859503.1| - 0.023 14.6 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|305663215|ref|YP_003859503.1| - 0.13 12.0 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease DUF104 PF01954.11 gi|305663216|ref|YP_003859504.1| - 9.4e-19 67.2 2.5 1e-18 67.0 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF217 PF02697.9 gi|305663216|ref|YP_003859504.1| - 0.061 13.5 0.2 0.083 13.1 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 DUF104 PF01954.11 gi|305663217|ref|YP_003859505.1| - 1.6e-18 66.4 3.5 1.8e-18 66.3 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 PIN PF01850.16 gi|305663218|ref|YP_003859506.1| - 0.00049 20.4 0.2 0.00051 20.3 0.1 1.0 1 0 0 1 1 1 1 PIN domain Pyr_excise PF03013.9 gi|305663219|ref|YP_003859507.1| - 0.0009 19.0 0.6 0.0018 18.0 0.4 1.6 1 1 0 1 1 1 1 Pyrimidine dimer DNA glycosylase gag-asp_proteas PF13975.1 gi|305663221|ref|YP_003859509.1| - 0.00041 20.0 0.0 0.00041 20.0 0.0 1.2 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.1 gi|305663221|ref|YP_003859509.1| - 0.0049 17.3 0.0 0.005 17.3 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease RVP PF00077.15 gi|305663221|ref|YP_003859509.1| - 0.043 13.7 0.0 0.043 13.7 0.0 1.1 1 0 0 1 1 1 0 Retroviral aspartyl protease DUF1973 PF09315.6 gi|305663221|ref|YP_003859509.1| - 0.12 11.8 0.0 0.14 11.5 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1973) Zfx_Zfy_act PF04704.8 gi|305663222|ref|YP_003859510.1| - 6.4 5.5 11.8 6.5 5.5 0.1 2.7 2 1 0 2 2 2 0 Zfx / Zfy transcription activation region NTP_transf_2 PF01909.18 gi|305663223|ref|YP_003859511.1| - 0.0054 17.0 0.0 0.007 16.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain NosD PF05048.8 gi|305663226|ref|YP_003859514.1| - 1.1e-61 207.9 110.7 2.2e-32 112.1 28.9 4.2 3 1 2 5 5 5 3 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|305663226|ref|YP_003859514.1| - 8.9e-33 113.2 82.7 1.2e-17 64.1 24.1 3.3 3 1 1 4 4 4 2 Right handed beta helix region Vpu PF00558.14 gi|305663226|ref|YP_003859514.1| - 6.2 6.4 7.9 0.2 11.2 0.6 2.0 2 0 0 2 2 2 0 Vpu protein Pkinase PF00069.20 gi|305663227|ref|YP_003859515.1| - 1.7e-28 99.4 0.0 3.4e-28 98.5 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|305663227|ref|YP_003859515.1| - 2e-20 72.9 0.0 3.1e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|305663227|ref|YP_003859515.1| - 1.3e-06 27.6 0.0 1.9e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Kinase-like Kdo PF06293.9 gi|305663227|ref|YP_003859515.1| - 0.0056 15.7 0.0 0.0096 15.0 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family PPR PF01535.15 gi|305663227|ref|YP_003859515.1| - 0.015 15.2 2.2 3.2 7.9 0.0 4.2 3 0 0 3 3 3 0 PPR repeat FH2 PF02181.18 gi|305663227|ref|YP_003859515.1| - 0.041 12.7 0.1 0.063 12.1 0.1 1.2 1 0 0 1 1 1 0 Formin Homology 2 Domain FHA PF00498.21 gi|305663228|ref|YP_003859516.1| - 1.5e-07 31.4 0.0 2.7e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 FHA domain SBP_bac_11 PF13531.1 gi|305663228|ref|YP_003859516.1| - 0.11 12.0 0.0 12 5.4 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein Fungal_trans_2 PF11951.3 gi|305663228|ref|YP_003859516.1| - 0.14 10.7 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 Fungal specific transcription factor domain Pkinase PF00069.20 gi|305663229|ref|YP_003859517.1| - 2.4e-17 62.9 0.1 1.8e-16 60.0 0.0 2.2 2 0 0 2 2 2 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|305663229|ref|YP_003859517.1| - 7.5e-08 31.7 0.0 2.3e-07 30.1 0.0 1.9 1 1 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|305663229|ref|YP_003859517.1| - 6.2e-05 22.1 0.0 0.00018 20.6 0.0 1.7 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family NPV_P10 PF05531.7 gi|305663229|ref|YP_003859517.1| - 1.4 9.2 23.5 12 6.2 0.2 7.8 8 1 0 8 8 8 0 Nucleopolyhedrovirus P10 protein Apolipoprotein PF01442.13 gi|305663231|ref|YP_003859519.1| - 1.4e-05 24.7 7.3 6.4e-05 22.5 5.1 1.8 1 1 1 2 2 2 1 Apolipoprotein A1/A4/E domain Baculo_PEP_C PF04513.7 gi|305663231|ref|YP_003859519.1| - 0.00018 21.3 8.2 0.0083 15.9 5.6 2.5 1 1 0 1 1 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|305663231|ref|YP_003859519.1| - 0.0019 18.0 8.8 0.24 11.1 0.4 3.3 1 1 2 3 3 3 1 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|305663231|ref|YP_003859519.1| - 0.017 14.3 1.1 0.026 13.6 0.7 1.3 1 0 0 1 1 1 0 Reovirus sigma C capsid protein ApoO PF09769.4 gi|305663231|ref|YP_003859519.1| - 0.018 14.7 2.4 0.73 9.5 0.5 2.7 1 1 1 2 2 2 0 Apolipoprotein O Prominin PF05478.6 gi|305663231|ref|YP_003859519.1| - 0.024 12.2 3.5 0.029 11.9 2.4 1.2 1 0 0 1 1 1 0 Prominin Peptidase_C50 PF03568.12 gi|305663231|ref|YP_003859519.1| - 0.027 13.1 0.4 0.033 12.8 0.3 1.1 1 0 0 1 1 1 0 Peptidase family C50 Gp58 PF07902.6 gi|305663231|ref|YP_003859519.1| - 0.04 12.1 2.3 0.055 11.6 1.6 1.1 1 0 0 1 1 1 0 gp58-like protein IL6 PF00489.12 gi|305663231|ref|YP_003859519.1| - 0.048 13.2 0.3 0.18 11.3 0.1 2.0 1 1 1 2 2 2 0 Interleukin-6/G-CSF/MGF family CENP-Q PF13094.1 gi|305663231|ref|YP_003859519.1| - 0.053 13.5 5.8 0.085 12.8 4.0 1.3 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit Mitofilin PF09731.4 gi|305663231|ref|YP_003859519.1| - 0.054 12.1 7.8 0.072 11.7 5.4 1.2 1 0 0 1 1 1 0 Mitochondrial inner membrane protein HSBP1 PF06825.7 gi|305663231|ref|YP_003859519.1| - 0.054 13.0 0.1 1.4 8.5 0.0 3.0 2 1 1 3 3 3 0 Heat shock factor binding protein 1 DUF3422 PF11902.3 gi|305663231|ref|YP_003859519.1| - 0.056 12.3 4.9 0.079 11.8 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3422) DNA_photolyase PF00875.13 gi|305663231|ref|YP_003859519.1| - 0.069 12.8 0.8 0.14 11.8 0.3 1.8 2 1 0 2 2 1 0 DNA photolyase DUF3584 PF12128.3 gi|305663231|ref|YP_003859519.1| - 0.088 10.1 7.8 0.16 9.2 5.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Fzo_mitofusin PF04799.8 gi|305663231|ref|YP_003859519.1| - 0.089 12.1 6.8 3.2 7.1 2.7 2.7 1 1 1 2 2 2 0 fzo-like conserved region Phasin PF05597.6 gi|305663231|ref|YP_003859519.1| - 0.1 12.3 6.6 1.8 8.3 0.8 2.5 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) SF-assemblin PF06705.6 gi|305663231|ref|YP_003859519.1| - 0.15 11.1 12.4 0.41 9.7 8.6 1.6 1 1 0 1 1 1 0 SF-assemblin/beta giardin HCR PF07111.7 gi|305663231|ref|YP_003859519.1| - 0.15 10.0 8.5 0.39 8.6 0.6 2.0 1 1 1 2 2 2 0 Alpha helical coiled-coil rod protein (HCR) GrpE PF01025.14 gi|305663231|ref|YP_003859519.1| - 0.17 11.4 6.0 0.43 10.1 4.1 1.7 1 1 0 1 1 1 0 GrpE NPV_P10 PF05531.7 gi|305663231|ref|YP_003859519.1| - 0.18 12.0 3.2 0.38 11.0 0.2 2.7 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Tup_N PF08581.5 gi|305663231|ref|YP_003859519.1| - 0.19 11.9 7.1 0.18 12.0 1.8 2.6 1 1 1 2 2 2 0 Tup N-terminal DUF3763 PF12592.3 gi|305663231|ref|YP_003859519.1| - 0.22 11.1 1.1 1 9.0 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3763) KID PF02524.9 gi|305663231|ref|YP_003859519.1| - 0.22 11.7 4.3 3.1 8.3 0.2 3.8 4 0 0 4 4 2 0 KID repeat Med9 PF07544.8 gi|305663231|ref|YP_003859519.1| - 0.24 11.1 8.6 0.19 11.4 1.1 2.8 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 DUF4094 PF13334.1 gi|305663231|ref|YP_003859519.1| - 0.26 11.7 2.2 2.3 8.6 0.0 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4094) Syntaxin PF00804.20 gi|305663231|ref|YP_003859519.1| - 0.33 11.1 9.8 0.25 11.5 0.9 2.6 1 1 1 2 2 2 0 Syntaxin AAA_13 PF13166.1 gi|305663231|ref|YP_003859519.1| - 0.36 9.2 6.8 0.51 8.7 4.7 1.2 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.6 gi|305663231|ref|YP_003859519.1| - 0.4 10.6 12.5 0.26 11.1 2.5 3.7 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) Prefoldin PF02996.12 gi|305663231|ref|YP_003859519.1| - 0.42 10.2 6.8 11 5.6 0.1 3.1 2 1 1 3 3 3 0 Prefoldin subunit DUF2205 PF10224.4 gi|305663231|ref|YP_003859519.1| - 0.46 10.0 8.9 3.3 7.3 2.3 3.5 3 1 1 4 4 3 0 Predicted coiled-coil protein (DUF2205) DUF883 PF05957.8 gi|305663231|ref|YP_003859519.1| - 0.6 10.5 3.4 1 9.8 1.6 1.9 2 0 0 2 2 1 0 Bacterial protein of unknown function (DUF883) DUF16 PF01519.11 gi|305663231|ref|YP_003859519.1| - 0.62 10.3 4.2 15 5.8 2.9 2.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF724 PF05266.9 gi|305663231|ref|YP_003859519.1| - 0.81 9.2 6.9 1.6 8.3 4.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF724) HSCB_C PF07743.8 gi|305663231|ref|YP_003859519.1| - 0.93 9.9 7.3 5.1 7.6 1.0 2.7 1 1 1 2 2 2 0 HSCB C-terminal oligomerisation domain SlyX PF04102.7 gi|305663231|ref|YP_003859519.1| - 1.1 9.7 8.0 3.3 8.1 0.2 3.5 3 1 1 4 4 3 0 SlyX Prefoldin_2 PF01920.15 gi|305663231|ref|YP_003859519.1| - 1.1 9.0 10.4 0.46 10.2 0.8 3.0 1 1 1 2 2 2 0 Prefoldin subunit DUF1640 PF07798.6 gi|305663231|ref|YP_003859519.1| - 1.7 8.6 11.3 0.85 9.6 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1640) IncA PF04156.9 gi|305663231|ref|YP_003859519.1| - 1.9 8.0 10.8 0.2 11.2 2.0 2.2 1 1 1 2 2 2 0 IncA protein COG2 PF06148.6 gi|305663231|ref|YP_003859519.1| - 2.2 8.1 8.4 81 3.0 5.2 2.8 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MtrG PF04210.8 gi|305663231|ref|YP_003859519.1| - 2.3 7.9 8.8 34 4.1 0.3 4.2 2 1 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G Allexi_40kDa PF05549.6 gi|305663231|ref|YP_003859519.1| - 2.5 7.3 5.8 1.4 8.1 0.7 1.9 1 1 1 2 2 2 0 Allexivirus 40kDa protein Tweety PF04906.8 gi|305663231|ref|YP_003859519.1| - 3.5 5.9 4.8 11 4.3 0.2 2.1 1 1 1 2 2 2 0 Tweety DUF972 PF06156.8 gi|305663231|ref|YP_003859519.1| - 9.7 6.6 8.3 3.7e+02 1.4 5.8 2.8 1 1 0 1 1 1 0 Protein of unknown function (DUF972) SinI PF08671.5 gi|305663232|ref|YP_003859520.1| - 0.0087 15.4 0.1 0.021 14.2 0.1 1.7 1 0 0 1 1 1 1 Anti-repressor SinI SKG6 PF08693.5 gi|305663232|ref|YP_003859520.1| - 0.025 13.8 0.1 0.053 12.8 0.0 1.5 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF948 PF06103.6 gi|305663233|ref|YP_003859521.1| - 0.00076 19.2 3.5 0.017 14.9 0.5 3.3 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|305663233|ref|YP_003859521.1| - 0.0011 17.5 18.3 0.0018 16.8 12.7 1.2 1 0 0 1 1 1 1 AAA domain DUF641 PF04859.7 gi|305663233|ref|YP_003859521.1| - 0.0018 18.0 8.2 0.0018 18.0 5.7 2.9 1 1 2 3 3 3 1 Plant protein of unknown function (DUF641) Reo_sigmaC PF04582.7 gi|305663233|ref|YP_003859521.1| - 0.0099 15.0 0.5 0.019 14.1 0.3 1.4 1 0 0 1 1 1 1 Reovirus sigma C capsid protein AphA_like PF14557.1 gi|305663233|ref|YP_003859521.1| - 0.039 13.5 3.2 0.2 11.1 2.4 2.1 2 0 0 2 2 2 0 Putative AphA-like transcriptional regulator Filament PF00038.16 gi|305663233|ref|YP_003859521.1| - 0.043 13.2 29.7 0.024 14.1 18.0 2.2 2 1 0 2 2 2 0 Intermediate filament protein FUSC PF04632.7 gi|305663233|ref|YP_003859521.1| - 0.062 11.7 0.2 0.08 11.3 0.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Fib_alpha PF08702.5 gi|305663233|ref|YP_003859521.1| - 0.12 12.5 14.1 0.26 11.4 5.9 2.5 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|305663233|ref|YP_003859521.1| - 0.14 11.7 40.5 0.14 11.7 10.8 3.1 2 1 2 4 4 3 0 IncA protein ATG16 PF08614.6 gi|305663233|ref|YP_003859521.1| - 0.18 11.5 28.0 0.14 11.9 10.6 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) HOOK PF05622.7 gi|305663233|ref|YP_003859521.1| - 0.43 8.3 28.6 1.5 6.5 19.8 1.7 1 1 0 1 1 1 0 HOOK protein TPR_MLP1_2 PF07926.7 gi|305663233|ref|YP_003859521.1| - 0.45 10.2 25.9 2.1 8.0 8.1 2.8 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein Tropomyosin_1 PF12718.2 gi|305663233|ref|YP_003859521.1| - 0.61 9.9 34.3 0.21 11.4 16.4 2.4 1 1 0 1 1 1 0 Tropomyosin like DUF4407 PF14362.1 gi|305663233|ref|YP_003859521.1| - 0.81 8.5 7.4 1.3 7.8 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PilJ PF13675.1 gi|305663233|ref|YP_003859521.1| - 0.84 9.9 6.7 1.1 9.5 0.9 3.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Prominin PF05478.6 gi|305663233|ref|YP_003859521.1| - 1.2 6.5 10.0 0.68 7.3 4.9 1.7 1 1 0 1 1 1 0 Prominin Exonuc_VII_L PF02601.10 gi|305663233|ref|YP_003859521.1| - 1.2 8.2 9.6 2.2 7.4 6.6 1.5 1 0 0 1 1 1 0 Exonuclease VII, large subunit MbeD_MobD PF04899.7 gi|305663233|ref|YP_003859521.1| - 1.3 8.9 9.9 3.5 7.5 2.5 2.9 1 1 1 2 2 2 0 MbeD/MobD like Allexi_40kDa PF05549.6 gi|305663233|ref|YP_003859521.1| - 1.6 7.9 8.5 0.79 8.9 1.9 2.1 1 1 1 2 2 2 0 Allexivirus 40kDa protein Spc7 PF08317.6 gi|305663233|ref|YP_003859521.1| - 1.7 7.2 33.8 0.45 9.1 9.7 2.6 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF4559 PF15112.1 gi|305663233|ref|YP_003859521.1| - 1.7 7.6 14.8 0.55 9.3 7.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) APG17 PF04108.7 gi|305663233|ref|YP_003859521.1| - 1.8 7.2 20.5 0.71 8.6 10.3 2.4 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF1664 PF07889.7 gi|305663233|ref|YP_003859521.1| - 3.7 7.3 12.2 7.4 6.3 2.4 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) HlyD PF00529.15 gi|305663233|ref|YP_003859521.1| - 4.7 6.4 10.4 7.4 5.7 7.2 1.2 1 0 0 1 1 1 0 HlyD family secretion protein KMP11 PF03037.11 gi|305663233|ref|YP_003859521.1| - 5 7.7 10.8 25 5.5 0.9 3.7 2 1 1 3 3 3 0 Kinetoplastid membrane protein 11 APG6 PF04111.7 gi|305663233|ref|YP_003859521.1| - 5.4 5.9 30.3 11 4.8 19.5 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 DUF4201 PF13870.1 gi|305663233|ref|YP_003859521.1| - 5.4 6.4 31.4 0.89 8.9 9.7 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF4201) Kinetocho_Slk19 PF12709.2 gi|305663233|ref|YP_003859521.1| - 5.9 7.0 29.7 0.24 11.5 1.1 3.9 3 1 1 4 4 3 0 Central kinetochore-associated OmpH PF03938.9 gi|305663233|ref|YP_003859521.1| - 6 6.7 19.3 4.8e+03 -2.7 13.4 2.8 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) DUF1963 PF09234.5 gi|305663233|ref|YP_003859521.1| - 6.8 6.8 10.0 10 6.2 4.5 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1963) Syntaxin_2 PF14523.1 gi|305663233|ref|YP_003859521.1| - 8.8 6.4 15.2 7.3 6.6 1.3 3.7 1 1 2 3 3 3 0 Syntaxin-like protein DUF3450 PF11932.3 gi|305663233|ref|YP_003859521.1| - 9.9 5.3 14.6 1.8 7.7 4.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) MMR_HSR1 PF01926.18 gi|305663234|ref|YP_003859522.1| - 0.0037 17.2 0.0 0.015 15.2 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase DUF87 PF01935.12 gi|305663234|ref|YP_003859522.1| - 0.032 14.0 0.1 0.15 11.8 0.0 2.2 2 1 1 3 3 3 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|305663234|ref|YP_003859522.1| - 0.14 11.5 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|305663234|ref|YP_003859522.1| - 0.15 12.3 0.0 0.27 11.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter Miro PF08477.8 gi|305663234|ref|YP_003859522.1| - 0.15 12.5 0.1 0.69 10.4 0.0 2.1 2 1 1 3 3 3 0 Miro-like protein PQQ_2 PF13360.1 gi|305663236|ref|YP_003859524.1| - 3.5e-17 62.6 24.6 6e-09 35.7 2.9 3.3 1 1 2 3 3 3 3 PQQ-like domain WD40 PF00400.27 gi|305663236|ref|YP_003859524.1| - 2.8e-10 39.6 20.3 0.007 16.2 0.1 6.9 7 0 0 7 7 7 4 WD domain, G-beta repeat PQQ PF01011.16 gi|305663236|ref|YP_003859524.1| - 3e-09 35.9 1.0 0.45 10.1 0.0 5.7 5 0 0 5 5 5 4 PQQ enzyme repeat PD40 PF07676.7 gi|305663236|ref|YP_003859524.1| - 6.3e-08 32.1 11.5 0.45 10.2 0.0 6.1 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat DUF4208 PF13907.1 gi|305663236|ref|YP_003859524.1| - 0.51 10.5 1.1 0.72 10.0 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4208) EphA2_TM PF14575.1 gi|305663236|ref|YP_003859524.1| - 2.3 8.6 6.0 0.83 10.0 0.6 2.8 3 0 0 3 3 3 0 Ephrin type-A receptor 2 transmembrane domain Sec61_beta PF03911.11 gi|305663238|ref|YP_003859526.1| - 4 7.3 7.4 5.4 6.9 5.1 1.2 1 0 0 1 1 1 0 Sec61beta family Chitin_bind_1 PF00187.14 gi|305663239|ref|YP_003859527.1| - 0.16 11.9 8.3 0.32 10.9 5.7 1.6 1 1 0 1 1 1 0 Chitin recognition protein P12 PF12669.2 gi|305663239|ref|YP_003859527.1| - 0.21 11.8 4.2 0.25 11.5 2.9 1.1 1 0 0 1 1 1 0 Virus attachment protein p12 family BtpA PF03437.10 gi|305663241|ref|YP_003859529.1| - 1e-73 247.7 0.0 1.5e-73 247.2 0.0 1.2 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|305663241|ref|YP_003859529.1| - 0.00088 17.8 0.0 0.0014 17.1 0.0 1.4 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Bac_luciferase PF00296.15 gi|305663241|ref|YP_003859529.1| - 0.013 14.6 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Luciferase-like monooxygenase PEP_mutase PF13714.1 gi|305663241|ref|YP_003859529.1| - 0.066 12.4 0.0 0.69 9.0 0.0 2.1 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase CcdA PF07362.7 gi|305663242|ref|YP_003859530.1| - 0.035 13.9 0.4 0.04 13.7 0.3 1.3 1 1 0 1 1 1 0 Post-segregation antitoxin CcdA Herpes_teg_N PF04843.7 gi|305663242|ref|YP_003859530.1| - 0.11 11.8 0.0 0.13 11.7 0.0 1.0 1 0 0 1 1 1 0 Herpesvirus tegument protein, N-terminal conserved region Cortex-I_coil PF09304.5 gi|305663244|ref|YP_003859532.1| - 0.0042 17.1 0.2 0.005 16.8 0.2 1.1 1 0 0 1 1 1 1 Cortexillin I, coiled coil Prefoldin_2 PF01920.15 gi|305663244|ref|YP_003859532.1| - 0.011 15.5 0.2 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 Prefoldin subunit SF-assemblin PF06705.6 gi|305663244|ref|YP_003859532.1| - 0.016 14.3 0.0 0.02 14.0 0.0 1.0 1 0 0 1 1 1 0 SF-assemblin/beta giardin Sec3_C PF09763.4 gi|305663244|ref|YP_003859532.1| - 0.055 11.5 0.7 0.063 11.3 0.5 1.0 1 0 0 1 1 1 0 Exocyst complex component Sec3 EMP24_GP25L PF01105.19 gi|305663244|ref|YP_003859532.1| - 0.062 13.0 1.6 0.063 12.9 1.1 1.1 1 0 0 1 1 1 0 emp24/gp25L/p24 family/GOLD PDR_CDR PF06422.7 gi|305663244|ref|YP_003859532.1| - 0.065 12.9 0.5 0.12 12.0 0.2 1.5 1 1 1 2 2 2 0 CDR ABC transporter Spc7 PF08317.6 gi|305663244|ref|YP_003859532.1| - 0.084 11.5 0.1 0.094 11.3 0.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|305663244|ref|YP_003859532.1| - 0.085 12.6 0.0 0.093 12.5 0.0 1.1 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus TBPIP PF07106.8 gi|305663244|ref|YP_003859532.1| - 0.14 11.6 0.2 0.17 11.4 0.1 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF2730 PF10805.3 gi|305663244|ref|YP_003859532.1| - 0.25 11.0 0.2 0.25 11.0 0.1 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2730) PaREP1 PF05942.6 gi|305663245|ref|YP_003859533.1| - 2.6e-24 85.2 2.2 4.4e-24 84.5 1.5 1.4 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family RHH_1 PF01402.16 gi|305663245|ref|YP_003859533.1| - 0.0016 18.2 1.8 0.003 17.3 0.1 2.3 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HEPN PF05168.9 gi|305663245|ref|YP_003859533.1| - 0.0024 17.7 1.2 0.0076 16.1 0.8 1.8 1 1 0 1 1 1 1 HEPN domain FAD-oxidase_C PF02913.14 gi|305663245|ref|YP_003859533.1| - 0.022 14.1 0.2 0.027 13.7 0.1 1.1 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain eIF3_subunit PF08597.5 gi|305663245|ref|YP_003859533.1| - 0.081 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit DUF2365 PF10157.4 gi|305663245|ref|YP_003859533.1| - 0.09 12.6 0.0 5.2 6.9 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) Exonuc_VII_S PF02609.11 gi|305663245|ref|YP_003859533.1| - 0.77 9.5 5.8 11 5.8 0.1 3.1 3 0 0 3 3 3 0 Exonuclease VII small subunit DUF973 PF06157.6 gi|305663246|ref|YP_003859534.1| - 6.1e-13 48.3 37.9 8.5e-13 47.9 26.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF1282 PF06930.7 gi|305663246|ref|YP_003859534.1| - 0.01 15.5 14.4 0.01 15.5 10.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) Claudin_2 PF13903.1 gi|305663246|ref|YP_003859534.1| - 0.02 14.6 12.6 0.02 14.6 8.7 3.0 1 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction Peptidase_S49 PF01343.13 gi|305663247|ref|YP_003859535.1| - 5.7e-40 136.6 0.0 7.4e-40 136.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|305663247|ref|YP_003859535.1| - 7.4e-10 38.7 3.8 7.7e-06 25.6 0.2 2.5 1 1 2 3 3 3 2 Clp protease SDH_sah PF01972.11 gi|305663247|ref|YP_003859535.1| - 1.7e-07 30.3 0.4 2.3e-07 29.9 0.3 1.3 1 0 0 1 1 1 1 Serine dehydrogenase proteinase ECH PF00378.15 gi|305663247|ref|YP_003859535.1| - 0.013 14.6 0.0 1 8.4 0.1 2.5 2 1 0 2 2 2 0 Enoyl-CoA hydratase/isomerase family YPEB PF14620.1 gi|305663247|ref|YP_003859535.1| - 0.1 11.6 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 YpeB sporulation Arch_ATPase PF01637.13 gi|305663248|ref|YP_003859536.1| - 4.5e-52 177.0 1.4 6.6e-52 176.5 0.2 1.7 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663248|ref|YP_003859536.1| - 4.3e-06 26.8 0.0 8.9e-06 25.8 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|305663248|ref|YP_003859536.1| - 1.1e-05 24.4 0.0 5.8e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 NB-ARC domain AAA PF00004.24 gi|305663248|ref|YP_003859536.1| - 0.00024 21.3 0.0 0.00054 20.1 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305663248|ref|YP_003859536.1| - 0.00035 21.3 0.6 0.0014 19.4 0.4 2.3 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|305663248|ref|YP_003859536.1| - 0.00041 20.2 0.4 0.0012 18.7 0.1 2.1 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|305663248|ref|YP_003859536.1| - 0.0014 18.7 0.0 0.0031 17.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain RNA_helicase PF00910.17 gi|305663248|ref|YP_003859536.1| - 0.0018 18.3 0.0 0.0076 16.4 0.0 2.0 3 0 0 3 3 2 1 RNA helicase KAP_NTPase PF07693.9 gi|305663248|ref|YP_003859536.1| - 0.0023 16.9 0.0 0.0041 16.1 0.0 1.3 1 1 0 1 1 1 1 KAP family P-loop domain NACHT PF05729.7 gi|305663248|ref|YP_003859536.1| - 0.0025 17.5 0.0 0.0049 16.5 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.1 gi|305663248|ref|YP_003859536.1| - 0.003 17.1 0.0 0.0051 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain SieB PF14163.1 gi|305663248|ref|YP_003859536.1| - 0.0035 16.9 0.1 0.0077 15.8 0.1 1.5 1 0 0 1 1 1 1 Superinfection exclusion protein B Rad17 PF03215.10 gi|305663248|ref|YP_003859536.1| - 0.0041 15.8 0.0 0.0058 15.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein PDH PF02153.12 gi|305663248|ref|YP_003859536.1| - 0.0048 15.8 0.0 0.029 13.2 0.0 2.0 2 0 0 2 2 2 1 Prephenate dehydrogenase AAA_23 PF13476.1 gi|305663248|ref|YP_003859536.1| - 0.017 15.4 0.0 0.035 14.4 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663248|ref|YP_003859536.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|305663248|ref|YP_003859536.1| - 0.022 13.7 0.0 0.052 12.4 0.0 1.7 1 1 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_25 PF13481.1 gi|305663248|ref|YP_003859536.1| - 0.045 13.1 0.0 0.15 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain PhoH PF02562.11 gi|305663248|ref|YP_003859536.1| - 0.052 12.7 0.0 0.091 11.9 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_5 PF07728.9 gi|305663248|ref|YP_003859536.1| - 0.054 13.2 0.0 0.41 10.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) G-alpha PF00503.15 gi|305663248|ref|YP_003859536.1| - 0.058 12.0 0.0 0.059 12.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_33 PF13671.1 gi|305663248|ref|YP_003859536.1| - 0.069 13.0 0.0 0.31 10.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|305663248|ref|YP_003859536.1| - 0.073 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|305663248|ref|YP_003859536.1| - 0.076 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|305663248|ref|YP_003859536.1| - 0.079 13.2 0.6 0.42 10.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|305663248|ref|YP_003859536.1| - 0.13 12.2 0.0 0.41 10.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305663248|ref|YP_003859536.1| - 0.15 11.4 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SNase PF00565.12 gi|305663250|ref|YP_003859538.1| - 3.8e-07 30.3 0.0 5.3e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue Radical_SAM PF04055.16 gi|305663251|ref|YP_003859539.1| - 5.7e-13 49.3 0.6 1.6e-12 47.8 0.4 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305663251|ref|YP_003859539.1| - 2.9e-07 30.6 0.0 5.9e-07 29.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305663251|ref|YP_003859539.1| - 8.1e-06 25.8 0.0 1.4e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain JmjN PF02375.12 gi|305663251|ref|YP_003859539.1| - 0.094 12.2 0.5 0.38 10.3 0.1 2.2 2 0 0 2 2 2 0 jmjN domain TP_methylase PF00590.15 gi|305663252|ref|YP_003859540.1| - 9.7e-32 110.3 0.0 1.1e-31 110.2 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases AIRS_C PF02769.17 gi|305663252|ref|YP_003859540.1| - 0.11 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 AIR synthase related protein, C-terminal domain KH_3 PF13014.1 gi|305663252|ref|YP_003859540.1| - 0.23 11.1 5.2 0.21 11.2 1.2 2.8 2 1 1 3 3 3 0 KH domain Radical_SAM PF04055.16 gi|305663253|ref|YP_003859541.1| - 3.3e-22 79.4 0.1 5.6e-22 78.6 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305663253|ref|YP_003859541.1| - 1.7e-09 37.9 0.0 3.2e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|305663253|ref|YP_003859541.1| - 2.4e-08 34.1 0.5 9.3e-08 32.2 0.2 2.0 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.1 gi|305663253|ref|YP_003859541.1| - 3.9e-06 26.8 0.0 3.9e-06 26.8 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain HEPN PF05168.9 gi|305663253|ref|YP_003859541.1| - 0.027 14.3 0.0 0.065 13.1 0.0 1.6 1 0 0 1 1 1 0 HEPN domain FA_desaturase PF00487.19 gi|305663254|ref|YP_003859542.1| - 0.94 8.8 5.6 1 8.7 3.9 1.0 1 0 0 1 1 1 0 Fatty acid desaturase CbiQ PF02361.11 gi|305663254|ref|YP_003859542.1| - 6.3 6.2 10.1 7.2 6.0 7.0 1.0 1 0 0 1 1 1 0 Cobalt transport protein DUF1626 PF07788.6 gi|305663255|ref|YP_003859543.1| - 3.2e-22 78.0 2.2 5.8e-22 77.2 1.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1626) DUF3782 PF12644.2 gi|305663255|ref|YP_003859543.1| - 4.6e-07 29.5 13.8 1.2e-06 28.1 9.6 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) Phlebovirus_NSM PF07246.6 gi|305663255|ref|YP_003859543.1| - 0.0094 15.1 1.1 0.019 14.1 0.8 1.5 1 1 0 1 1 1 1 Phlebovirus nonstructural protein NS-M Occludin_ELL PF07303.8 gi|305663255|ref|YP_003859543.1| - 0.046 14.4 2.0 1.3 9.7 0.2 2.4 1 1 1 2 2 2 0 Occludin homology domain HAP1_N PF04849.8 gi|305663255|ref|YP_003859543.1| - 0.051 12.5 2.4 0.082 11.8 1.6 1.3 1 0 0 1 1 1 0 HAP1 N-terminal conserved region TPR_MLP1_2 PF07926.7 gi|305663255|ref|YP_003859543.1| - 0.068 12.9 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein INSIG PF07281.7 gi|305663255|ref|YP_003859543.1| - 0.082 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Insulin-induced protein (INSIG) GAS PF13851.1 gi|305663255|ref|YP_003859543.1| - 0.089 11.9 3.8 0.2 10.8 2.7 1.5 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.9 gi|305663255|ref|YP_003859543.1| - 0.095 12.3 2.2 0.21 11.1 1.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Snapin_Pallidin PF14712.1 gi|305663255|ref|YP_003859543.1| - 0.1 12.9 0.6 0.93 9.8 0.1 2.4 1 1 1 2 2 2 0 Snapin/Pallidin APG6 PF04111.7 gi|305663255|ref|YP_003859543.1| - 0.27 10.2 2.5 0.37 9.7 1.7 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|305663255|ref|YP_003859543.1| - 0.27 11.6 2.8 2 8.7 0.7 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF4375 PF14300.1 gi|305663255|ref|YP_003859543.1| - 0.53 10.2 2.9 1.7 8.6 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4375) Vac_Fusion PF02346.11 gi|305663255|ref|YP_003859543.1| - 0.85 9.0 10.8 6.3 6.3 0.3 3.6 1 1 1 3 3 3 0 Chordopoxvirus fusion protein GvpK PF05121.7 gi|305663255|ref|YP_003859543.1| - 1.9 8.3 6.4 12 5.7 0.1 2.9 1 1 2 3 3 3 0 Gas vesicle protein K TMF_TATA_bd PF12325.3 gi|305663255|ref|YP_003859543.1| - 2.8 7.7 6.7 2.4 7.9 2.9 2.1 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding IncA PF04156.9 gi|305663255|ref|YP_003859543.1| - 4.4 6.8 7.1 34 3.9 4.9 2.0 1 1 0 1 1 1 0 IncA protein Radical_SAM PF04055.16 gi|305663256|ref|YP_003859544.1| - 4.9e-14 52.8 1.7 9.6e-08 32.3 0.0 3.0 2 1 1 3 3 3 2 Radical SAM superfamily Fer4_12 PF13353.1 gi|305663256|ref|YP_003859544.1| - 3.1e-07 30.5 0.0 0.0029 17.7 0.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305663256|ref|YP_003859544.1| - 1.2e-06 28.4 0.0 0.061 13.3 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain DUF849 PF05853.7 gi|305663256|ref|YP_003859544.1| - 0.041 12.7 0.0 0.058 12.2 0.0 1.1 1 0 0 1 1 1 0 Prokaryotic protein of unknown function (DUF849) Nitro_FeMo-Co PF02579.12 gi|305663257|ref|YP_003859545.1| - 3.4e-16 59.1 0.0 4e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor DUF2730 PF10805.3 gi|305663258|ref|YP_003859546.1| - 1.7e-05 24.5 3.2 0.33 10.6 0.1 3.7 1 1 2 3 3 3 3 Protein of unknown function (DUF2730) DUF1640 PF07798.6 gi|305663258|ref|YP_003859546.1| - 0.00016 21.7 0.7 0.00035 20.6 0.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) WEMBL PF05701.6 gi|305663258|ref|YP_003859546.1| - 0.00037 19.0 1.2 0.0011 17.5 0.8 1.7 1 1 0 1 1 1 1 Weak chloroplast movement under blue light Cast PF10174.4 gi|305663258|ref|YP_003859546.1| - 0.0015 16.7 1.3 0.0017 16.4 0.9 1.0 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF3782 PF12644.2 gi|305663258|ref|YP_003859546.1| - 0.0028 17.4 9.9 0.13 12.0 6.8 2.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) Rootletin PF15035.1 gi|305663258|ref|YP_003859546.1| - 0.0059 16.6 0.6 0.072 13.0 0.1 2.4 1 1 1 2 2 2 1 Ciliary rootlet component, centrosome cohesion DUF1192 PF06698.6 gi|305663258|ref|YP_003859546.1| - 0.0061 16.3 5.0 0.3 10.9 0.1 3.3 1 1 3 4 4 4 2 Protein of unknown function (DUF1192) DUF904 PF06005.7 gi|305663258|ref|YP_003859546.1| - 0.011 16.0 0.7 0.16 12.2 0.5 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF904) Spc7 PF08317.6 gi|305663258|ref|YP_003859546.1| - 0.023 13.3 0.7 0.028 13.0 0.5 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|305663258|ref|YP_003859546.1| - 0.049 13.4 2.1 0.16 11.8 1.5 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 CCDC144C PF14915.1 gi|305663258|ref|YP_003859546.1| - 0.05 12.5 4.1 0.5 9.2 2.8 2.1 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region DUF2552 PF10827.3 gi|305663258|ref|YP_003859546.1| - 0.053 13.4 0.0 3.2 7.7 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2552) Wbp11 PF09429.5 gi|305663258|ref|YP_003859546.1| - 0.061 13.3 2.7 4.5 7.3 0.8 2.8 1 1 1 2 2 2 0 WW domain binding protein 11 DUF2407_C PF13373.1 gi|305663258|ref|YP_003859546.1| - 0.082 12.8 0.5 1.3 8.9 0.0 2.4 1 1 1 2 2 2 0 DUF2407 C-terminal domain NPV_P10 PF05531.7 gi|305663258|ref|YP_003859546.1| - 0.093 12.9 0.7 0.47 10.7 0.1 2.2 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.7 gi|305663258|ref|YP_003859546.1| - 0.098 12.4 4.1 1.3 8.8 0.8 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Syntaxin PF00804.20 gi|305663258|ref|YP_003859546.1| - 0.099 12.8 2.9 0.62 10.2 1.3 2.5 1 1 1 2 2 2 0 Syntaxin MAD PF05557.8 gi|305663258|ref|YP_003859546.1| - 0.1 10.6 3.1 0.53 8.3 0.9 1.5 1 1 0 1 1 1 0 Mitotic checkpoint protein DUF4618 PF15397.1 gi|305663258|ref|YP_003859546.1| - 0.12 11.6 1.3 2.4 7.4 0.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) DUF3349 PF11829.3 gi|305663258|ref|YP_003859546.1| - 0.12 12.7 0.9 1.5 9.2 0.1 2.5 1 1 3 4 4 4 0 Protein of unknown function (DUF3349) Fez1 PF06818.10 gi|305663258|ref|YP_003859546.1| - 0.19 11.7 1.4 0.34 10.8 1.0 1.6 1 1 0 1 1 1 0 Fez1 Seryl_tRNA_N PF02403.17 gi|305663258|ref|YP_003859546.1| - 0.38 10.7 6.0 0.37 10.8 2.3 2.4 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DrrA_P4M PF14860.1 gi|305663258|ref|YP_003859546.1| - 0.41 10.3 2.9 1.1 9.0 1.9 1.8 1 1 0 1 1 1 0 DrrA phosphatidylinositol 4-phosphate binding domain TSC22 PF01166.13 gi|305663258|ref|YP_003859546.1| - 1.5 8.8 7.7 26 4.8 1.0 4.4 2 2 3 5 5 5 0 TSC-22/dip/bun family FlaC_arch PF05377.6 gi|305663258|ref|YP_003859546.1| - 1.7 8.6 4.5 9.1 6.2 0.8 3.1 1 1 2 3 3 3 0 Flagella accessory protein C (FlaC) XhlA PF10779.4 gi|305663259|ref|YP_003859547.1| - 5.3e-05 23.0 0.2 6e-05 22.8 0.1 1.1 1 0 0 1 1 1 1 Haemolysin XhlA DivIC PF04977.10 gi|305663259|ref|YP_003859547.1| - 6.1e-05 22.4 0.1 8.3e-05 22.0 0.1 1.2 1 0 0 1 1 1 1 Septum formation initiator Prefoldin_3 PF13758.1 gi|305663259|ref|YP_003859547.1| - 0.00024 20.7 1.3 0.0031 17.2 0.5 2.0 1 1 1 2 2 2 2 Prefoldin subunit FliD_C PF07195.7 gi|305663259|ref|YP_003859547.1| - 0.012 14.8 0.1 0.014 14.6 0.1 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF2721 PF11026.3 gi|305663259|ref|YP_003859547.1| - 0.015 14.9 0.1 0.017 14.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Prefoldin PF02996.12 gi|305663259|ref|YP_003859547.1| - 0.016 14.8 0.1 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Prefoldin subunit BLOC1_2 PF10046.4 gi|305663259|ref|YP_003859547.1| - 0.023 14.8 0.2 0.03 14.4 0.1 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF496 PF04363.7 gi|305663259|ref|YP_003859547.1| - 0.025 14.3 1.0 0.029 14.1 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF496) NPV_P10 PF05531.7 gi|305663259|ref|YP_003859547.1| - 0.033 14.4 0.2 0.043 14.0 0.2 1.3 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein CHD5 PF04420.9 gi|305663259|ref|YP_003859547.1| - 0.038 13.6 0.0 0.045 13.4 0.0 1.1 1 0 0 1 1 1 0 CHD5-like protein MRF_C1 PF13887.1 gi|305663259|ref|YP_003859547.1| - 0.043 12.8 5.4 2.6 7.1 1.0 3.2 1 1 1 2 2 2 0 Myelin gene regulatory factor -C-terminal domain 1 DUF3552 PF12072.3 gi|305663259|ref|YP_003859547.1| - 0.044 13.0 0.2 0.062 12.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) DUF4140 PF13600.1 gi|305663259|ref|YP_003859547.1| - 0.053 13.9 0.0 0.077 13.4 0.0 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) bZIP_1 PF00170.16 gi|305663259|ref|YP_003859547.1| - 0.062 13.2 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 bZIP transcription factor TMF_DNA_bd PF12329.3 gi|305663259|ref|YP_003859547.1| - 0.075 12.8 0.0 0.091 12.5 0.0 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Prefoldin_2 PF01920.15 gi|305663259|ref|YP_003859547.1| - 0.077 12.7 0.0 0.1 12.3 0.0 1.2 1 0 0 1 1 1 0 Prefoldin subunit MtrG PF04210.8 gi|305663259|ref|YP_003859547.1| - 0.09 12.4 4.9 1.3 8.7 0.5 2.5 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1664 PF07889.7 gi|305663259|ref|YP_003859547.1| - 0.1 12.3 0.4 0.45 10.3 0.3 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Snf7 PF03357.16 gi|305663259|ref|YP_003859547.1| - 0.12 11.7 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Snf7 HSBP1 PF06825.7 gi|305663259|ref|YP_003859547.1| - 0.13 11.8 6.1 1.9 8.0 4.2 2.2 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Matrilin_ccoil PF10393.4 gi|305663259|ref|YP_003859547.1| - 0.13 11.6 0.1 0.72 9.2 0.0 1.9 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Osmo_CC PF08946.5 gi|305663259|ref|YP_003859547.1| - 0.19 11.7 0.6 0.93 9.5 0.4 1.9 1 1 0 1 1 1 0 Osmosensory transporter coiled coil DUF3375 PF11855.3 gi|305663259|ref|YP_003859547.1| - 0.21 10.3 0.7 0.22 10.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3375) HalX PF08663.5 gi|305663259|ref|YP_003859547.1| - 0.3 11.0 1.5 1.1 9.2 1.0 1.8 1 1 0 1 1 1 0 HalX domain Dockerin_1 PF00404.13 gi|305663259|ref|YP_003859547.1| - 0.53 10.0 2.9 16 5.3 0.0 3.3 1 1 3 4 4 4 0 Dockerin type I repeat DUF457 PF04307.9 gi|305663260|ref|YP_003859548.1| - 6.7e-07 28.7 7.0 8.9e-07 28.3 4.8 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) MotB_plug PF13677.1 gi|305663260|ref|YP_003859548.1| - 0.041 13.2 0.1 0.066 12.5 0.1 1.3 1 0 0 1 1 1 0 Membrane MotB of proton-channel complex MotA/MotB DUF3149 PF11346.3 gi|305663260|ref|YP_003859548.1| - 0.086 12.4 0.9 0.23 11.0 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) ATPase_gene1 PF09527.5 gi|305663260|ref|YP_003859548.1| - 1.2 8.9 7.5 14 5.5 0.2 3.5 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) Aldo_ket_red PF00248.16 gi|305663261|ref|YP_003859549.1| - 7.2e-21 74.2 0.0 7.8e-21 74.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family OrfB_Zn_ribbon PF07282.6 gi|305663262|ref|YP_003859550.1| - 4.4e-19 67.9 0.3 1.5e-18 66.1 0.1 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|305663262|ref|YP_003859550.1| - 7.8e-09 35.2 6.1 1.2e-08 34.6 4.2 1.2 1 0 0 1 1 1 1 Probable transposase Asp_protease_2 PF13650.1 gi|305663263|ref|YP_003859551.1| - 4e-06 27.2 0.2 7e-06 26.4 0.1 1.5 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|305663263|ref|YP_003859551.1| - 1.7e-05 24.5 0.1 2.8e-05 23.8 0.0 1.5 1 1 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|305663263|ref|YP_003859551.1| - 0.0012 18.7 0.1 0.0016 18.3 0.1 1.3 1 0 0 1 1 1 1 Retroviral aspartyl protease HD PF01966.17 gi|305663265|ref|YP_003859553.1| - 3.1e-08 33.6 0.5 5.1e-08 32.9 0.4 1.4 1 0 0 1 1 1 1 HD domain DUF2874 PF11396.3 gi|305663266|ref|YP_003859554.1| - 0.058 13.3 1.4 0.15 12.0 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2874) HTH_24 PF13412.1 gi|305663267|ref|YP_003859555.1| - 2e-09 36.6 0.0 3.3e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|305663267|ref|YP_003859555.1| - 1.7e-08 34.0 0.1 3.1e-08 33.2 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|305663267|ref|YP_003859555.1| - 5.2e-08 32.4 0.0 7.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|305663267|ref|YP_003859555.1| - 5.2e-06 26.0 0.0 8.1e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|305663267|ref|YP_003859555.1| - 1.2e-05 24.9 0.0 1.8e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|305663267|ref|YP_003859555.1| - 1.8e-05 24.2 0.0 3e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|305663267|ref|YP_003859555.1| - 3.3e-05 23.3 0.0 6.6e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|305663267|ref|YP_003859555.1| - 6.2e-05 22.8 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|305663267|ref|YP_003859555.1| - 8.9e-05 22.5 0.1 0.00019 21.5 0.0 1.6 2 0 0 2 2 1 1 Transcriptional regulator HTH_38 PF13936.1 gi|305663267|ref|YP_003859555.1| - 9.2e-05 21.9 0.1 0.00018 20.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|305663267|ref|YP_003859555.1| - 0.0001 21.8 0.0 0.00019 20.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|305663267|ref|YP_003859555.1| - 0.00038 20.3 0.0 0.00067 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|305663267|ref|YP_003859555.1| - 0.00056 19.3 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2250 PF10007.4 gi|305663267|ref|YP_003859555.1| - 0.0011 18.7 0.0 0.0016 18.2 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.1 gi|305663267|ref|YP_003859555.1| - 0.0013 18.7 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|305663267|ref|YP_003859555.1| - 0.002 17.7 0.0 0.0035 17.0 0.0 1.4 1 0 0 1 1 1 1 MarR family CENP-B_N PF04218.8 gi|305663267|ref|YP_003859555.1| - 0.0027 17.1 0.0 0.0051 16.2 0.0 1.4 1 0 0 1 1 1 1 CENP-B N-terminal DNA-binding domain Phage_rep_org_N PF09681.5 gi|305663267|ref|YP_003859555.1| - 0.0034 16.9 0.1 0.006 16.1 0.0 1.5 2 0 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) NUMOD1 PF07453.8 gi|305663267|ref|YP_003859555.1| - 0.004 16.9 0.1 0.014 15.2 0.0 2.0 1 1 0 1 1 1 1 NUMOD1 domain Terminase_5 PF06056.7 gi|305663267|ref|YP_003859555.1| - 0.004 16.6 0.0 0.0072 15.8 0.0 1.4 1 0 0 1 1 1 1 Putative ATPase subunit of terminase (gpP-like) FUR PF01475.14 gi|305663267|ref|YP_003859555.1| - 0.0043 16.9 1.3 0.12 12.2 0.0 2.1 2 0 0 2 2 2 1 Ferric uptake regulator family MerR_1 PF13411.1 gi|305663267|ref|YP_003859555.1| - 0.0062 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 MerR HTH family regulatory protein HTH_30 PF13556.1 gi|305663267|ref|YP_003859555.1| - 0.0096 15.4 0.4 0.025 14.1 0.0 1.9 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_27 PF13463.1 gi|305663267|ref|YP_003859555.1| - 0.019 15.2 0.0 0.099 12.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain RepL PF05732.6 gi|305663267|ref|YP_003859555.1| - 0.021 14.0 0.0 0.021 14.0 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_Crp_2 PF13545.1 gi|305663267|ref|YP_003859555.1| - 0.024 14.3 0.0 0.05 13.4 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GerE PF00196.14 gi|305663267|ref|YP_003859555.1| - 0.047 13.0 0.0 0.077 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|305663267|ref|YP_003859555.1| - 0.058 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein Sigma70_r4 PF04545.11 gi|305663267|ref|YP_003859555.1| - 0.067 12.5 0.0 0.12 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_12 PF08461.5 gi|305663267|ref|YP_003859555.1| - 0.072 12.8 0.0 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Phage_terminase PF10668.4 gi|305663267|ref|YP_003859555.1| - 0.077 12.7 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Phage terminase small subunit HTH_10 PF04967.7 gi|305663267|ref|YP_003859555.1| - 0.087 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain FeoC PF09012.5 gi|305663267|ref|YP_003859555.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator ApoO PF09769.4 gi|305663268|ref|YP_003859556.1| - 4.2 7.0 5.6 31 4.2 0.0 2.2 2 0 0 2 2 2 0 Apolipoprotein O DGC PF08859.6 gi|305663269|ref|YP_003859557.1| - 3e-27 94.6 0.6 3.6e-27 94.4 0.4 1.0 1 0 0 1 1 1 1 DGC domain DUF603 PF04645.7 gi|305663271|ref|YP_003859559.1| - 0.065 13.1 0.9 0.23 11.3 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function, DUF603 ABC_tran PF00005.22 gi|305663272|ref|YP_003859560.1| - 3.5e-24 85.6 0.0 4.8e-24 85.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663272|ref|YP_003859560.1| - 8.3e-13 48.9 4.2 1.9e-08 34.6 0.0 2.5 3 0 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|305663272|ref|YP_003859560.1| - 1.2e-06 27.9 0.2 0.028 13.6 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|305663272|ref|YP_003859560.1| - 1.1e-05 25.0 0.3 0.11 11.8 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_23 PF13476.1 gi|305663272|ref|YP_003859560.1| - 4.1e-05 23.9 0.0 0.00011 22.6 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|305663272|ref|YP_003859560.1| - 0.00021 20.7 0.0 0.00036 19.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|305663272|ref|YP_003859560.1| - 0.0061 16.7 0.0 0.47 10.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|305663272|ref|YP_003859560.1| - 0.026 13.3 0.1 0.59 8.9 0.0 2.1 2 0 0 2 2 2 0 NB-ARC domain MutS_V PF00488.16 gi|305663272|ref|YP_003859560.1| - 0.028 13.8 0.0 0.93 8.8 0.0 2.1 2 0 0 2 2 2 0 MutS domain V AAA_18 PF13238.1 gi|305663272|ref|YP_003859560.1| - 0.043 14.1 0.6 5.9 7.2 0.1 2.3 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|305663272|ref|YP_003859560.1| - 0.052 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|305663272|ref|YP_003859560.1| - 0.061 13.3 0.0 0.21 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_5 PF07728.9 gi|305663272|ref|YP_003859560.1| - 0.082 12.6 0.3 6.6 6.4 0.1 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|305663272|ref|YP_003859560.1| - 0.093 12.4 0.1 0.24 11.0 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase AAA_17 PF13207.1 gi|305663272|ref|YP_003859560.1| - 0.15 12.8 0.5 1.1 10.0 0.3 2.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663272|ref|YP_003859560.1| - 0.16 11.6 0.1 0.76 9.4 0.0 1.9 2 0 0 2 2 2 0 NACHT domain DUF2074 PF09847.4 gi|305663273|ref|YP_003859561.1| - 4.2e-18 65.3 52.3 6e-18 64.8 36.3 1.2 1 0 0 1 1 1 1 Predicted permease (DUF2074) Radical_SAM PF04055.16 gi|305663275|ref|YP_003859563.1| - 1.4e-15 57.8 0.0 3.2e-15 56.6 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|305663275|ref|YP_003859563.1| - 2e-07 30.8 0.4 0.034 13.6 1.6 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF1848) DUF912 PF06024.7 gi|305663276|ref|YP_003859564.1| - 0.021 14.8 1.2 0.028 14.4 0.3 1.6 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) RTTN_N PF14726.1 gi|305663276|ref|YP_003859564.1| - 0.058 13.9 0.1 0.13 12.7 0.0 1.6 2 0 0 2 2 2 0 Rotatin, an armadillo repeat protein, centriole functioning NVEALA PF14055.1 gi|305663276|ref|YP_003859564.1| - 0.26 11.0 1.4 0.61 9.8 1.0 1.6 1 0 0 1 1 1 0 NVEALA protein DUF515 PF04415.7 gi|305663276|ref|YP_003859564.1| - 0.42 8.7 4.9 0.48 8.6 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF515) AAA_3 PF07726.6 gi|305663277|ref|YP_003859565.1| - 8.1e-65 216.3 0.1 1.2e-64 215.7 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305663277|ref|YP_003859565.1| - 1.8e-17 63.3 0.0 4.7e-17 62.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|305663277|ref|YP_003859565.1| - 2.6e-10 39.6 0.0 6.9e-07 28.3 0.0 2.4 2 1 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|305663277|ref|YP_003859565.1| - 2.2e-09 37.5 0.1 6.4e-09 36.0 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|305663277|ref|YP_003859565.1| - 1.7e-06 27.2 0.1 2.3e-05 23.5 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|305663277|ref|YP_003859565.1| - 4.7e-06 26.1 0.1 2.3e-05 23.9 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_17 PF13207.1 gi|305663277|ref|YP_003859565.1| - 0.007 17.1 0.1 0.017 15.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain Erp_C PF06780.6 gi|305663277|ref|YP_003859565.1| - 0.0089 15.8 1.2 0.015 15.1 0.8 1.3 1 0 0 1 1 1 1 Erp protein C-terminus Mg_chelatase PF01078.16 gi|305663277|ref|YP_003859565.1| - 0.013 14.6 0.3 3.9 6.5 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|305663277|ref|YP_003859565.1| - 0.042 13.7 0.4 0.22 11.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain (Cdc48 subfamily) DUF4129 PF13559.1 gi|305663278|ref|YP_003859566.1| - 1.9e-07 30.9 1.5 4.9e-07 29.6 0.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) HEPN PF05168.9 gi|305663278|ref|YP_003859566.1| - 0.026 14.4 1.6 2.2 8.2 0.1 3.0 3 0 0 3 3 3 0 HEPN domain Desmo_N PF06771.6 gi|305663278|ref|YP_003859566.1| - 1.4 8.8 6.2 0.22 11.4 0.5 2.5 2 1 0 2 2 2 0 Viral Desmoplakin N-terminus DUF423 PF04241.10 gi|305663280|ref|YP_003859568.1| - 0.021 14.7 4.3 0.027 14.3 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF423) Multi_Drug_Res PF00893.14 gi|305663280|ref|YP_003859568.1| - 0.025 15.0 3.5 0.031 14.7 2.4 1.0 1 0 0 1 1 1 0 Small Multidrug Resistance protein DUF3917 PF13055.1 gi|305663280|ref|YP_003859568.1| - 0.026 14.7 5.3 0.033 14.4 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3917) PIRT PF15099.1 gi|305663280|ref|YP_003859568.1| - 0.28 10.4 4.5 13 4.9 3.9 2.0 1 1 1 2 2 2 0 Phosphoinositide-interacting protein family DUF4131 PF13567.1 gi|305663280|ref|YP_003859568.1| - 0.62 9.4 3.1 0.69 9.3 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF912 PF06024.7 gi|305663281|ref|YP_003859569.1| - 0.15 12.1 1.9 0.38 10.8 1.3 1.7 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) DUF58 PF01882.13 gi|305663282|ref|YP_003859570.1| - 3.7e-18 65.4 0.0 6.2e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF58 BPD_transp_2 PF02653.11 gi|305663283|ref|YP_003859571.1| - 7.9e-30 103.7 42.6 7.9e-30 103.7 29.5 1.6 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ABC_tran PF00005.22 gi|305663284|ref|YP_003859572.1| - 8.2e-47 158.9 0.0 2.3e-22 79.7 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305663284|ref|YP_003859572.1| - 5.9e-14 52.7 6.1 4.2e-08 33.5 1.5 3.1 2 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663284|ref|YP_003859572.1| - 2.3e-05 23.7 0.0 0.0045 16.2 0.0 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|305663284|ref|YP_003859572.1| - 0.00065 18.8 0.0 0.14 11.1 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|305663284|ref|YP_003859572.1| - 0.00088 19.6 0.0 0.0016 18.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305663284|ref|YP_003859572.1| - 0.0019 17.7 0.3 3.3 7.0 0.0 2.9 3 0 0 3 3 3 2 AAA-like domain AAA_29 PF13555.1 gi|305663284|ref|YP_003859572.1| - 0.0086 15.5 0.1 0.028 13.9 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|305663284|ref|YP_003859572.1| - 0.027 14.1 0.7 0.45 10.1 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 ArgK PF03308.11 gi|305663284|ref|YP_003859572.1| - 0.039 12.7 0.6 0.23 10.1 0.1 2.2 2 0 0 2 2 2 0 ArgK protein ABC_ATPase PF09818.4 gi|305663284|ref|YP_003859572.1| - 0.091 11.3 5.5 2.7 6.4 0.2 4.0 4 1 0 4 4 4 0 Predicted ATPase of the ABC class SbcCD_C PF13558.1 gi|305663284|ref|YP_003859572.1| - 0.17 11.8 0.0 12 5.9 0.0 2.7 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|305663284|ref|YP_003859572.1| - 0.19 11.3 0.1 1.9 8.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|305663284|ref|YP_003859572.1| - 0.19 10.9 0.1 0.5 9.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|305663284|ref|YP_003859572.1| - 0.2 11.7 2.5 8.2 6.5 0.1 3.5 4 0 0 4 4 4 0 AAA domain NB-ARC PF00931.17 gi|305663284|ref|YP_003859572.1| - 1.5 7.5 3.6 5.1 5.8 0.2 2.6 3 0 0 3 3 3 0 NB-ARC domain AAA_17 PF13207.1 gi|305663284|ref|YP_003859572.1| - 2.1 9.1 5.6 6.8 7.5 0.2 3.4 4 1 0 4 4 3 0 AAA domain Peripla_BP_4 PF13407.1 gi|305663285|ref|YP_003859573.1| - 7.5e-51 172.9 1.0 1e-50 172.4 0.7 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.16 gi|305663285|ref|YP_003859573.1| - 8.7e-10 38.2 0.0 1.3e-09 37.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family Peripla_BP_6 PF13458.1 gi|305663285|ref|YP_003859573.1| - 0.013 14.8 3.6 0.25 10.6 2.3 2.4 1 1 1 2 2 2 0 Periplasmic binding protein ABC_sub_bind PF04392.7 gi|305663285|ref|YP_003859573.1| - 0.017 14.0 0.1 0.027 13.4 0.1 1.3 1 0 0 1 1 1 0 ABC transporter substrate binding protein PSP PF04046.11 gi|305663285|ref|YP_003859573.1| - 0.21 11.0 1.0 0.91 8.9 0.0 2.4 2 1 0 2 2 2 0 PSP Na_H_Exchanger PF00999.16 gi|305663286|ref|YP_003859574.1| - 2.1e-13 49.5 53.5 2.1e-13 49.5 37.1 2.1 2 0 0 2 2 2 2 Sodium/hydrogen exchanger family Cyclophil_like PF04126.8 gi|305663287|ref|YP_003859575.1| - 1.4e-25 89.2 0.0 2.1e-25 88.6 0.0 1.3 1 0 0 1 1 1 1 Cyclophilin-like Peroxidase_2 PF01328.12 gi|305663287|ref|YP_003859575.1| - 0.065 11.8 0.0 0.095 11.3 0.0 1.2 1 0 0 1 1 1 0 Peroxidase, family 2 YqzH PF14164.1 gi|305663288|ref|YP_003859576.1| - 0.00019 21.2 0.4 0.00043 20.1 0.3 1.6 1 0 0 1 1 1 1 YqzH-like protein EzrA PF06160.7 gi|305663288|ref|YP_003859576.1| - 0.00075 17.8 5.0 0.0012 17.1 3.5 1.3 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Tropomyosin PF00261.15 gi|305663288|ref|YP_003859576.1| - 0.0012 17.9 0.3 0.0012 17.9 0.2 2.6 3 0 0 3 3 3 1 Tropomyosin DUF2730 PF10805.3 gi|305663288|ref|YP_003859576.1| - 0.0066 16.1 1.8 0.077 12.7 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF2730) Laminin_II PF06009.7 gi|305663288|ref|YP_003859576.1| - 0.026 14.2 1.0 0.092 12.5 0.8 1.8 1 1 1 2 2 2 0 Laminin Domain II DUF4375 PF14300.1 gi|305663288|ref|YP_003859576.1| - 0.043 13.8 1.9 0.22 11.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4375) DUF730 PF05325.6 gi|305663288|ref|YP_003859576.1| - 0.045 13.5 0.6 0.045 13.5 0.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF730) DNA_topoisoIV PF00521.15 gi|305663288|ref|YP_003859576.1| - 0.052 12.3 5.2 0.072 11.9 3.6 1.1 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Spc97_Spc98 PF04130.8 gi|305663288|ref|YP_003859576.1| - 0.071 11.4 0.2 0.079 11.2 0.1 1.2 1 0 0 1 1 1 0 Spc97 / Spc98 family MazG-like PF12643.2 gi|305663288|ref|YP_003859576.1| - 0.078 12.9 2.2 0.12 12.3 0.0 2.4 2 1 0 2 2 2 0 MazG-like family DUF1664 PF07889.7 gi|305663288|ref|YP_003859576.1| - 0.087 12.6 1.3 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|305663288|ref|YP_003859576.1| - 0.11 12.6 2.0 0.76 9.8 0.9 2.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Exonuc_VII_S PF02609.11 gi|305663288|ref|YP_003859576.1| - 0.12 12.1 9.3 0.18 11.5 4.3 2.3 2 0 0 2 2 2 0 Exonuclease VII small subunit AmoA PF05145.7 gi|305663288|ref|YP_003859576.1| - 0.15 11.0 0.1 0.21 10.5 0.0 1.1 1 0 0 1 1 1 0 Putative ammonia monooxygenase DUF2321 PF10083.4 gi|305663288|ref|YP_003859576.1| - 0.15 11.5 0.5 0.37 10.2 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) DUF3782 PF12644.2 gi|305663288|ref|YP_003859576.1| - 0.18 11.6 2.3 0.48 10.2 1.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) Spore_III_AB PF09548.5 gi|305663288|ref|YP_003859576.1| - 0.23 11.1 3.8 0.13 11.9 0.5 2.2 2 1 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) BAR PF03114.13 gi|305663288|ref|YP_003859576.1| - 0.28 10.6 0.1 0.28 10.6 0.0 3.0 1 1 1 3 3 3 0 BAR domain Vac_Fusion PF02346.11 gi|305663288|ref|YP_003859576.1| - 0.5 9.8 3.4 0.38 10.2 0.5 2.3 2 1 0 2 2 2 0 Chordopoxvirus fusion protein Tox-ODYAM1 PF15642.1 gi|305663288|ref|YP_003859576.1| - 1.2 7.7 5.9 2.2 6.8 0.6 2.2 1 1 1 2 2 2 0 Toxin in Odyssella and Amoebophilus IncA PF04156.9 gi|305663288|ref|YP_003859576.1| - 3.6 7.1 12.9 15 5.0 8.9 2.1 1 1 0 1 1 1 0 IncA protein Seryl_tRNA_N PF02403.17 gi|305663288|ref|YP_003859576.1| - 3.6 7.6 9.3 1.1 9.3 0.1 2.8 3 0 0 3 3 2 0 Seryl-tRNA synthetase N-terminal domain ABC_tran PF00005.22 gi|305663289|ref|YP_003859577.1| - 8.2e-34 116.8 0.0 1.1e-33 116.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663289|ref|YP_003859577.1| - 1.2e-18 68.0 1.1 4.4e-10 39.9 0.1 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|305663289|ref|YP_003859577.1| - 2.7e-09 36.5 1.9 0.00034 19.7 0.3 2.2 2 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|305663289|ref|YP_003859577.1| - 2.4e-07 30.2 0.1 3.8e-06 26.2 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305663289|ref|YP_003859577.1| - 5.6e-06 26.8 0.1 9.3e-06 26.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|305663289|ref|YP_003859577.1| - 1.7e-05 24.6 0.0 0.00023 21.0 0.0 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|305663289|ref|YP_003859577.1| - 2.2e-05 24.5 0.1 4e-05 23.6 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663289|ref|YP_003859577.1| - 3e-05 24.1 1.3 0.00064 19.8 0.9 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305663289|ref|YP_003859577.1| - 0.00011 21.6 0.0 0.00023 20.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|305663289|ref|YP_003859577.1| - 0.00013 20.6 0.0 0.037 12.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|305663289|ref|YP_003859577.1| - 0.0013 18.5 0.1 0.028 14.2 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|305663289|ref|YP_003859577.1| - 0.0018 17.6 0.0 0.15 11.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|305663289|ref|YP_003859577.1| - 0.0021 17.8 0.1 0.0037 16.9 0.1 1.8 1 1 0 1 1 1 1 Archaeal ATPase MobB PF03205.9 gi|305663289|ref|YP_003859577.1| - 0.0023 17.6 0.6 0.0057 16.3 0.1 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B RNA12 PF10443.4 gi|305663289|ref|YP_003859577.1| - 0.003 16.1 0.0 0.0044 15.5 0.0 1.2 1 0 0 1 1 1 1 RNA12 protein Mg_chelatase PF01078.16 gi|305663289|ref|YP_003859577.1| - 0.0039 16.3 0.0 0.0067 15.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|305663289|ref|YP_003859577.1| - 0.0051 16.6 0.0 0.015 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|305663289|ref|YP_003859577.1| - 0.0092 14.6 0.3 0.26 9.8 0.0 2.5 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|305663289|ref|YP_003859577.1| - 0.013 15.2 0.0 0.037 13.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain NACHT PF05729.7 gi|305663289|ref|YP_003859577.1| - 0.015 14.9 0.0 0.026 14.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RecA PF00154.16 gi|305663289|ref|YP_003859577.1| - 0.016 14.2 0.0 0.024 13.6 0.0 1.3 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PRK PF00485.13 gi|305663289|ref|YP_003859577.1| - 0.018 14.6 0.2 0.12 11.8 0.0 2.4 2 1 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF3584 PF12128.3 gi|305663289|ref|YP_003859577.1| - 0.019 12.3 0.0 0.025 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF258 PF03193.11 gi|305663289|ref|YP_003859577.1| - 0.022 13.9 0.0 0.032 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|305663289|ref|YP_003859577.1| - 0.026 15.3 0.4 0.061 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305663289|ref|YP_003859577.1| - 0.035 14.3 0.1 0.18 11.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|305663289|ref|YP_003859577.1| - 0.035 13.5 0.1 0.9 8.9 0.0 2.1 1 1 0 2 2 2 0 FtsK/SpoIIIE family NB-ARC PF00931.17 gi|305663289|ref|YP_003859577.1| - 0.036 12.9 0.0 0.062 12.1 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_30 PF13604.1 gi|305663289|ref|YP_003859577.1| - 0.047 13.2 0.0 0.081 12.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|305663289|ref|YP_003859577.1| - 0.056 12.5 0.0 0.089 11.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin UPF0079 PF02367.12 gi|305663289|ref|YP_003859577.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_18 PF13238.1 gi|305663289|ref|YP_003859577.1| - 0.069 13.4 1.2 0.46 10.7 0.8 2.3 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305663289|ref|YP_003859577.1| - 0.072 12.5 0.1 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.6 gi|305663289|ref|YP_003859577.1| - 0.088 11.4 0.0 0.13 10.9 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) T2SE PF00437.15 gi|305663289|ref|YP_003859577.1| - 0.089 11.6 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_10 PF12846.2 gi|305663289|ref|YP_003859577.1| - 0.094 12.1 0.4 0.65 9.3 0.1 1.9 1 1 0 2 2 2 0 AAA-like domain FecCD PF01032.13 gi|305663290|ref|YP_003859578.1| - 4.2e-70 236.0 49.5 5.2e-70 235.7 34.3 1.0 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|305663291|ref|YP_003859579.1| - 6.6e-31 107.2 0.0 8.2e-31 106.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF99 PF01949.11 gi|305663291|ref|YP_003859579.1| - 0.065 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF99 Arch_flagellin PF01917.11 gi|305663291|ref|YP_003859579.1| - 0.74 9.4 4.4 1.4 8.4 3.1 1.4 1 0 0 1 1 1 0 Archaebacterial flagellin FmdE PF02663.9 gi|305663292|ref|YP_003859580.1| - 9.1e-37 125.8 0.0 1.3e-36 125.3 0.0 1.2 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon zf-dskA_traR PF01258.12 gi|305663292|ref|YP_003859580.1| - 8.9e-05 22.1 1.0 0.00018 21.1 0.7 1.6 1 0 0 1 1 1 1 Prokaryotic dksA/traR C4-type zinc finger Hexapep PF00132.19 gi|305663292|ref|YP_003859580.1| - 0.01 15.3 1.1 0.021 14.3 0.2 2.0 2 0 0 2 2 2 0 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|305663292|ref|YP_003859580.1| - 0.11 12.0 2.3 0.19 11.3 0.6 2.2 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase DUF4428 PF14471.1 gi|305663292|ref|YP_003859580.1| - 0.15 11.8 0.3 0.28 10.9 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4428) CxxCxxCC PF03692.10 gi|305663293|ref|YP_003859581.1| - 2.7e-12 46.9 1.3 3.9e-12 46.4 0.9 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Syntaxin-18_N PF10496.4 gi|305663293|ref|YP_003859581.1| - 0.026 14.3 0.0 0.039 13.7 0.0 1.3 1 0 0 1 1 1 0 SNARE-complex protein Syntaxin-18 N-terminus Glyco_hydro_12 PF01670.11 gi|305663294|ref|YP_003859582.1| - 2.5e-15 56.5 0.2 4.8e-15 55.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 12 SoxE PF06525.6 gi|305663294|ref|YP_003859582.1| - 0.044 13.0 9.4 0.082 12.1 6.5 1.3 1 0 0 1 1 1 0 Sulfocyanin (SoxE) IgaA PF07095.6 gi|305663294|ref|YP_003859582.1| - 0.053 11.2 0.2 0.065 10.9 0.1 1.1 1 0 0 1 1 1 0 Intracellular growth attenuator protein IgaA Clr2 PF10383.4 gi|305663294|ref|YP_003859582.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Transcription-silencing protein Clr2 ASCH PF04266.9 gi|305663295|ref|YP_003859583.1| - 3.3e-09 37.0 0.1 3.8e-09 36.8 0.1 1.1 1 0 0 1 1 1 1 ASCH domain SpoA PF01052.15 gi|305663295|ref|YP_003859583.1| - 0.032 13.8 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 Surface presentation of antigens (SPOA) HTH_11 PF08279.7 gi|305663296|ref|YP_003859584.1| - 3e-10 39.5 0.6 1.3e-07 31.1 0.0 2.8 3 0 0 3 3 3 1 HTH domain HTH_20 PF12840.2 gi|305663296|ref|YP_003859584.1| - 3.3e-10 39.6 0.0 9.8e-10 38.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|305663296|ref|YP_003859584.1| - 3.8e-10 39.2 0.6 3.9e-09 36.0 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|305663296|ref|YP_003859584.1| - 5.9e-08 32.2 0.1 3.8e-07 29.6 0.0 2.1 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|305663296|ref|YP_003859584.1| - 2.2e-06 26.9 0.2 9.4e-06 24.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|305663296|ref|YP_003859584.1| - 2.4e-06 27.4 0.0 9.7e-06 25.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|305663296|ref|YP_003859584.1| - 1e-05 24.9 0.0 3.5e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|305663296|ref|YP_003859584.1| - 1.4e-05 24.7 0.1 0.00032 20.2 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.1 gi|305663296|ref|YP_003859584.1| - 7.4e-05 22.6 0.2 0.0002 21.2 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain MarR PF01047.17 gi|305663296|ref|YP_003859584.1| - 0.00012 21.7 0.1 0.00054 19.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_29 PF13551.1 gi|305663296|ref|YP_003859584.1| - 0.00022 21.3 0.1 0.00049 20.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn helix HTH_7 PF02796.10 gi|305663296|ref|YP_003859584.1| - 0.00046 19.9 0.1 0.0019 17.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_22 PF13309.1 gi|305663296|ref|YP_003859584.1| - 0.00099 18.8 0.2 0.0032 17.1 0.1 1.9 2 0 0 2 2 1 1 HTH domain HTH_17 PF12728.2 gi|305663296|ref|YP_003859584.1| - 0.0012 19.0 0.5 0.069 13.4 0.0 3.2 4 0 0 4 4 3 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|305663296|ref|YP_003859584.1| - 0.0018 18.3 0.0 0.0065 16.5 0.0 1.8 2 0 0 2 2 2 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|305663296|ref|YP_003859584.1| - 0.0022 17.7 0.0 0.0061 16.3 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|305663296|ref|YP_003859584.1| - 0.0022 17.5 0.0 0.0057 16.1 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain TetR_N PF00440.18 gi|305663296|ref|YP_003859584.1| - 0.0027 17.2 0.1 0.0063 16.1 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_12 PF08461.5 gi|305663296|ref|YP_003859584.1| - 0.0088 15.7 0.0 0.031 13.9 0.0 2.0 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Fe_dep_repress PF01325.14 gi|305663296|ref|YP_003859584.1| - 0.0099 15.7 0.0 0.32 10.9 0.0 2.7 3 0 0 3 3 3 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|305663296|ref|YP_003859584.1| - 0.014 15.0 0.4 0.04 13.5 0.1 1.9 2 0 0 2 2 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|305663296|ref|YP_003859584.1| - 0.017 14.6 0.1 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 HTH DNA binding domain HTH_DeoR PF08220.7 gi|305663296|ref|YP_003859584.1| - 0.024 14.1 0.2 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|305663296|ref|YP_003859584.1| - 0.027 14.5 0.0 0.069 13.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.6 gi|305663296|ref|YP_003859584.1| - 0.038 13.8 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.1 gi|305663296|ref|YP_003859584.1| - 0.043 13.3 1.1 0.089 12.3 0.5 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|305663296|ref|YP_003859584.1| - 0.056 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix Sigma70_r4_2 PF08281.7 gi|305663296|ref|YP_003859584.1| - 0.057 12.8 0.2 0.22 11.0 0.1 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 PadR PF03551.9 gi|305663296|ref|YP_003859584.1| - 0.06 13.1 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family UPF0122 PF04297.9 gi|305663296|ref|YP_003859584.1| - 0.064 13.2 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.1 gi|305663296|ref|YP_003859584.1| - 0.086 12.3 0.2 0.44 10.1 0.1 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|305663296|ref|YP_003859584.1| - 0.093 12.2 0.0 0.21 11.1 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) GerE PF00196.14 gi|305663296|ref|YP_003859584.1| - 0.12 11.7 0.2 0.43 9.9 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family FeoC PF09012.5 gi|305663296|ref|YP_003859584.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator NUMOD1 PF07453.8 gi|305663296|ref|YP_003859584.1| - 0.65 9.9 5.9 0.21 11.4 0.4 2.7 3 0 0 3 3 3 0 NUMOD1 domain TatD_DNase PF01026.16 gi|305663297|ref|YP_003859585.1| - 7.8e-46 156.3 0.0 9.3e-46 156.0 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase Radical_SAM PF04055.16 gi|305663298|ref|YP_003859586.1| - 3.5e-16 59.8 0.1 2.3e-15 57.1 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily zinc_ribbon_2 PF13240.1 gi|305663298|ref|YP_003859586.1| - 0.00023 20.5 0.3 1.1 8.8 0.0 2.8 2 0 0 2 2 2 2 zinc-ribbon domain zf-4CXXC_R1 PF10497.4 gi|305663298|ref|YP_003859586.1| - 0.0011 19.1 2.0 0.0082 16.2 0.0 2.6 3 0 0 3 3 3 1 Zinc-finger domain of monoamine-oxidase A repressor R1 DZR PF12773.2 gi|305663298|ref|YP_003859586.1| - 0.0013 18.4 1.6 0.0055 16.4 0.0 2.3 2 0 0 2 2 2 1 Double zinc ribbon Fer4_12 PF13353.1 gi|305663298|ref|YP_003859586.1| - 0.018 15.1 0.0 0.045 13.8 0.0 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain zf-C4_Topoisom PF01396.14 gi|305663298|ref|YP_003859586.1| - 0.036 13.5 0.6 0.53 9.8 0.0 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-ribbon_3 PF13248.1 gi|305663298|ref|YP_003859586.1| - 0.087 12.0 10.3 0.037 13.2 3.1 3.0 2 1 2 4 4 4 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|305663298|ref|YP_003859586.1| - 0.14 11.9 0.8 2.3 8.0 0.1 2.6 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_POL_M_15KD PF02150.11 gi|305663298|ref|YP_003859586.1| - 1.5 8.5 5.7 20 4.9 1.4 2.8 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.4 gi|305663298|ref|YP_003859586.1| - 4.9 6.9 7.0 84 3.0 4.8 2.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 ABC_tran PF00005.22 gi|305663299|ref|YP_003859587.1| - 2.1e-25 89.6 0.0 2.9e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663299|ref|YP_003859587.1| - 4.6e-11 43.2 0.0 5.3e-05 23.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663299|ref|YP_003859587.1| - 3.7e-05 23.0 0.0 0.018 14.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305663299|ref|YP_003859587.1| - 0.00012 21.5 0.0 0.00022 20.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|305663299|ref|YP_003859587.1| - 0.00014 21.6 0.1 0.00087 19.1 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|305663299|ref|YP_003859587.1| - 0.00015 21.4 0.1 0.00039 20.1 0.0 1.7 2 0 0 2 2 1 1 Part of AAA domain AAA_33 PF13671.1 gi|305663299|ref|YP_003859587.1| - 0.00036 20.4 0.1 0.012 15.5 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305663299|ref|YP_003859587.1| - 0.00053 19.1 0.0 0.44 9.5 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|305663299|ref|YP_003859587.1| - 0.00061 20.1 0.5 0.0017 18.7 0.4 1.9 1 1 0 1 1 1 1 AAA domain DUF3584 PF12128.3 gi|305663299|ref|YP_003859587.1| - 0.0013 16.1 0.1 0.0018 15.7 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) AAA_30 PF13604.1 gi|305663299|ref|YP_003859587.1| - 0.0036 16.8 0.0 0.0077 15.8 0.0 1.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|305663299|ref|YP_003859587.1| - 0.0063 16.8 1.4 0.68 10.2 1.0 2.5 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|305663299|ref|YP_003859587.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 TAF PF02969.12 gi|305663299|ref|YP_003859587.1| - 0.015 15.2 0.2 0.034 14.1 0.0 1.6 2 0 0 2 2 1 0 TATA box binding protein associated factor (TAF) SRP54 PF00448.17 gi|305663299|ref|YP_003859587.1| - 0.02 14.3 0.0 0.035 13.5 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NACHT PF05729.7 gi|305663299|ref|YP_003859587.1| - 0.027 14.1 0.2 0.062 12.9 0.1 1.6 1 1 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|305663299|ref|YP_003859587.1| - 0.029 15.1 1.6 0.13 13.1 1.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|305663299|ref|YP_003859587.1| - 0.032 12.7 0.0 0.075 11.4 0.0 1.6 1 1 1 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|305663299|ref|YP_003859587.1| - 0.035 14.0 0.0 0.092 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|305663299|ref|YP_003859587.1| - 0.08 12.9 0.0 0.092 12.7 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|305663299|ref|YP_003859587.1| - 0.091 12.9 0.4 0.33 11.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain Disaggr_assoc PF08480.5 gi|305663299|ref|YP_003859587.1| - 0.12 11.7 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Disaggregatase related Zeta_toxin PF06414.7 gi|305663299|ref|YP_003859587.1| - 0.15 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin BPD_transp_1 PF00528.17 gi|305663300|ref|YP_003859588.1| - 3.3e-10 39.7 16.4 3.3e-10 39.7 11.4 1.6 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|305663301|ref|YP_003859589.1| - 5.2e-10 39.2 0.0 6.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|305663301|ref|YP_003859589.1| - 6.2e-07 29.2 0.0 5.6e-06 26.1 0.0 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|305663301|ref|YP_003859589.1| - 0.0017 17.3 0.0 0.0027 16.6 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain DUF3943 PF13084.1 gi|305663301|ref|YP_003859589.1| - 0.069 12.7 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) Metallophos_2 PF12850.2 gi|305663302|ref|YP_003859590.1| - 1.5e-05 24.8 0.1 0.00015 21.6 0.0 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305663302|ref|YP_003859590.1| - 3.8e-05 23.1 0.4 0.00011 21.6 0.3 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase LRR_8 PF13855.1 gi|305663302|ref|YP_003859590.1| - 0.026 14.2 0.0 2.8 7.7 0.0 2.4 2 0 0 2 2 2 0 Leucine rich repeat NICE-3 PF07406.6 gi|305663305|ref|YP_003859593.1| - 0.032 13.7 0.3 0.081 12.4 0.0 1.7 1 1 1 2 2 2 0 NICE-3 protein SCP-1 PF05483.7 gi|305663305|ref|YP_003859593.1| - 0.1 10.3 0.4 0.15 9.8 0.3 1.1 1 0 0 1 1 1 0 Synaptonemal complex protein 1 (SCP-1) Band_7_1 PF13421.1 gi|305663306|ref|YP_003859594.1| - 5e-27 94.7 0.0 8.2e-27 94.0 0.0 1.3 1 0 0 1 1 1 1 SPFH domain-Band 7 family Band_7 PF01145.20 gi|305663306|ref|YP_003859594.1| - 1.6e-15 57.4 0.2 2.2e-15 57.0 0.1 1.2 1 0 0 1 1 1 1 SPFH domain / Band 7 family zf-ribbon_3 PF13248.1 gi|305663306|ref|YP_003859594.1| - 3e-12 45.3 7.9 2.1e-07 29.9 3.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305663306|ref|YP_003859594.1| - 4.6e-08 32.2 11.2 0.00012 21.4 4.5 2.6 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|305663306|ref|YP_003859594.1| - 1.1e-06 28.4 4.6 2.3e-06 27.3 3.2 1.6 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|305663306|ref|YP_003859594.1| - 0.00021 20.8 16.1 0.14 11.9 0.7 3.1 2 1 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|305663306|ref|YP_003859594.1| - 0.085 12.3 8.3 1.7 8.2 0.0 3.3 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|305663306|ref|YP_003859594.1| - 0.7 9.7 6.3 1.4 8.8 0.9 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like DUF2116 PF09889.4 gi|305663306|ref|YP_003859594.1| - 1.1 9.0 5.8 6.4 6.6 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) TF_Zn_Ribbon PF08271.7 gi|305663306|ref|YP_003859594.1| - 1.7 7.9 7.9 8.5 5.7 2.5 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|305663306|ref|YP_003859594.1| - 5 6.9 11.7 6.6 6.5 1.1 3.1 3 0 0 3 3 3 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|305663307|ref|YP_003859595.1| - 0.0018 17.4 2.4 0.0032 16.6 1.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305663307|ref|YP_003859595.1| - 0.0031 16.9 2.8 0.018 14.4 1.9 2.1 1 1 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|305663307|ref|YP_003859595.1| - 0.0059 16.0 0.5 0.016 14.6 0.3 1.8 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|305663307|ref|YP_003859595.1| - 0.022 14.2 0.3 0.045 13.2 0.2 1.5 1 0 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|305663307|ref|YP_003859595.1| - 0.037 13.8 0.1 0.073 12.8 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon TrkH PF02386.11 gi|305663307|ref|YP_003859595.1| - 0.073 11.6 0.1 0.12 10.8 0.1 1.3 1 0 0 1 1 1 0 Cation transport protein DUF2628 PF10947.3 gi|305663307|ref|YP_003859595.1| - 0.091 12.5 0.2 0.15 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) Zn_ribbon_recom PF13408.1 gi|305663307|ref|YP_003859595.1| - 1.8 8.9 8.0 42 4.5 0.1 3.4 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-ribbon_3 PF13248.1 gi|305663308|ref|YP_003859596.1| - 0.00013 21.0 2.7 0.00031 19.8 1.9 1.6 1 0 0 1 1 1 1 zinc-ribbon domain zf-CHCC PF10276.4 gi|305663308|ref|YP_003859596.1| - 0.00043 20.0 4.5 0.036 13.9 0.3 2.5 2 0 0 2 2 2 2 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|305663308|ref|YP_003859596.1| - 0.00066 19.0 3.7 0.0016 17.8 2.6 1.7 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305663308|ref|YP_003859596.1| - 0.00091 18.7 1.0 0.011 15.2 0.6 2.3 1 1 1 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|305663308|ref|YP_003859596.1| - 0.0019 17.8 1.2 0.026 14.1 1.0 2.2 1 1 1 2 2 2 2 zinc-ribbon domain zf-Di19 PF05605.7 gi|305663308|ref|YP_003859596.1| - 0.0075 16.3 2.0 2.2 8.4 0.2 2.3 2 0 0 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding DUF3938 PF13074.1 gi|305663308|ref|YP_003859596.1| - 0.0091 15.8 1.2 0.023 14.5 0.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3938) Cys_rich_CPXG PF14255.1 gi|305663308|ref|YP_003859596.1| - 0.016 15.0 4.2 2.6 7.9 0.1 2.7 3 0 0 3 3 2 0 Cysteine-rich CPXCG CpXC PF14353.1 gi|305663308|ref|YP_003859596.1| - 0.034 14.1 1.8 1.9 8.4 0.1 2.6 1 1 1 2 2 2 0 CpXC protein DZR PF12773.2 gi|305663308|ref|YP_003859596.1| - 0.038 13.8 0.3 0.084 12.7 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-C2H2_4 PF13894.1 gi|305663308|ref|YP_003859596.1| - 0.081 13.3 1.2 11 6.6 0.1 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger IBR PF01485.16 gi|305663308|ref|YP_003859596.1| - 0.12 12.2 1.1 0.25 11.2 0.4 1.8 2 0 0 2 2 2 0 IBR domain zf-C2H2 PF00096.21 gi|305663308|ref|YP_003859596.1| - 0.18 12.2 3.4 3.6 8.1 0.4 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|305663308|ref|YP_003859596.1| - 0.21 11.9 3.3 6.8 7.1 0.4 2.4 2 0 0 2 2 2 0 Zinc-finger double domain UPF0547 PF10571.4 gi|305663308|ref|YP_003859596.1| - 0.22 11.2 2.8 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PyrI_C PF02748.10 gi|305663308|ref|YP_003859596.1| - 0.66 9.4 2.5 17 4.9 0.1 2.3 1 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain Molybdop_Fe4S4 PF04879.11 gi|305663308|ref|YP_003859596.1| - 0.79 9.5 3.6 6.1 6.7 0.4 2.3 2 0 0 2 2 2 0 Molybdopterin oxidoreductase Fe4S4 domain TF_Zn_Ribbon PF08271.7 gi|305663308|ref|YP_003859596.1| - 0.82 9.0 5.5 4.7 6.6 0.4 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|305663308|ref|YP_003859596.1| - 0.99 9.4 7.3 4.9 7.2 0.2 2.9 2 1 1 3 3 3 0 zinc-finger zf-C2HC_2 PF13913.1 gi|305663308|ref|YP_003859596.1| - 4.3 7.1 4.9 15 5.3 0.0 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Phage_int_SAM_4 PF13495.1 gi|305663309|ref|YP_003859597.1| - 6e-08 32.8 0.7 9.9e-08 32.2 0.5 1.3 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|305663309|ref|YP_003859597.1| - 7.3e-07 29.2 1.0 1.3e-06 28.4 0.7 1.4 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain FliD_C PF07195.7 gi|305663309|ref|YP_003859597.1| - 0.0011 18.2 0.4 0.0015 17.8 0.3 1.2 1 0 0 1 1 1 1 Flagellar hook-associated protein 2 C-terminus RHH_1 PF01402.16 gi|305663309|ref|YP_003859597.1| - 0.0052 16.6 0.1 0.52 10.2 0.0 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Glutaredoxin PF00462.19 gi|305663309|ref|YP_003859597.1| - 0.058 13.3 0.0 0.43 10.6 0.0 2.2 2 0 0 2 2 2 0 Glutaredoxin RHH_3 PF12651.2 gi|305663309|ref|YP_003859597.1| - 0.069 12.8 0.3 0.44 10.3 0.0 2.4 2 0 0 2 2 2 0 Ribbon-helix-helix domain NurA PF09376.5 gi|305663310|ref|YP_003859598.1| - 5.1e-15 55.6 2.3 7.1e-15 55.1 1.6 1.2 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.12 gi|305663311|ref|YP_003859599.1| - 4.1e-10 39.8 0.6 7.3e-10 39.0 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|305663311|ref|YP_003859599.1| - 3.8e-09 36.4 0.2 0.00017 21.1 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain TrwB_AAD_bind PF10412.4 gi|305663311|ref|YP_003859599.1| - 0.00011 20.9 0.4 0.00019 20.2 0.3 1.2 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_19 PF13245.1 gi|305663311|ref|YP_003859599.1| - 0.00012 21.7 0.1 0.00044 19.9 0.1 2.0 1 0 0 1 1 1 1 Part of AAA domain DUF853 PF05872.7 gi|305663311|ref|YP_003859599.1| - 0.0011 17.4 0.0 0.98 7.6 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_22 PF13401.1 gi|305663311|ref|YP_003859599.1| - 0.0011 19.0 0.6 1.6 8.9 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA PF00004.24 gi|305663311|ref|YP_003859599.1| - 0.0014 18.8 6.1 0.015 15.5 0.0 3.1 2 1 1 3 3 3 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.13 gi|305663311|ref|YP_003859599.1| - 0.0017 17.8 0.2 0.079 12.4 0.1 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family UvrD-helicase PF00580.16 gi|305663311|ref|YP_003859599.1| - 0.0031 16.8 0.2 0.0059 15.9 0.1 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain ResIII PF04851.10 gi|305663311|ref|YP_003859599.1| - 0.021 14.6 0.3 0.5 10.1 0.1 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_11 PF13086.1 gi|305663311|ref|YP_003859599.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|305663311|ref|YP_003859599.1| - 0.13 11.6 0.0 0.32 10.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Glyco_hydro_35 PF01301.14 gi|305663312|ref|YP_003859600.1| - 4.2e-74 249.7 0.0 6.5e-74 249.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Glyco_hydro_42 PF02449.10 gi|305663312|ref|YP_003859600.1| - 2.1e-07 30.3 0.0 1.7e-06 27.4 0.0 2.3 2 1 0 2 2 2 1 Beta-galactosidase BetaGal_dom4_5 PF13364.1 gi|305663312|ref|YP_003859600.1| - 5.6e-06 26.5 0.0 2.1e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Beta-galactosidase jelly roll domain Cellulase PF00150.13 gi|305663312|ref|YP_003859600.1| - 0.13 11.4 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) Adenine_deam_C PF13382.1 gi|305663313|ref|YP_003859601.1| - 7.3e-47 158.6 0.0 1.1e-46 158.1 0.0 1.3 1 0 0 1 1 1 1 Adenine deaminase C-terminal domain Amidohydro_1 PF01979.15 gi|305663313|ref|YP_003859601.1| - 4e-22 79.3 0.1 4e-20 72.7 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|305663313|ref|YP_003859601.1| - 1.9e-13 51.1 0.1 9.9e-11 42.1 0.0 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|305663313|ref|YP_003859601.1| - 1.5e-09 37.5 0.0 4.3e-09 36.0 0.0 1.8 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|305663313|ref|YP_003859601.1| - 3.3e-05 23.2 0.2 0.032 13.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family IMPDH PF00478.20 gi|305663314|ref|YP_003859602.1| - 6.2e-98 327.9 0.5 7.6e-98 327.6 0.3 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|305663314|ref|YP_003859602.1| - 1.8e-12 47.0 1.3 3.8e-06 26.2 0.7 2.5 3 0 0 3 3 3 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|305663314|ref|YP_003859602.1| - 1e-10 41.0 1.9 3.5e-09 35.9 0.9 2.8 3 0 0 3 3 3 1 FMN-dependent dehydrogenase CBS PF00571.23 gi|305663314|ref|YP_003859602.1| - 6e-10 38.7 3.4 8.3e-09 35.1 0.2 3.0 3 0 0 3 3 3 1 CBS domain Glu_synthase PF01645.12 gi|305663314|ref|YP_003859602.1| - 3.3e-07 29.5 0.6 5e-07 28.9 0.4 1.2 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|305663314|ref|YP_003859602.1| - 0.0002 20.4 1.0 0.00037 19.5 0.7 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|305663314|ref|YP_003859602.1| - 0.0082 15.4 0.2 0.022 14.0 0.2 1.7 1 0 0 1 1 1 1 Histidine biosynthesis protein ThiG PF05690.9 gi|305663314|ref|YP_003859602.1| - 0.013 14.5 0.4 0.023 13.7 0.3 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG RmuC PF02646.11 gi|305663315|ref|YP_003859603.1| - 0.016 14.0 0.0 0.034 12.9 0.0 1.5 1 0 0 1 1 1 0 RmuC family DUF1948 PF09185.5 gi|305663315|ref|YP_003859603.1| - 0.099 12.2 1.9 0.13 11.9 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1948) Occludin_ELL PF07303.8 gi|305663315|ref|YP_003859603.1| - 2.3 9.0 8.9 0.11 13.2 0.8 2.5 2 2 0 2 2 2 0 Occludin homology domain ECM1 PF05782.6 gi|305663316|ref|YP_003859604.1| - 0.015 14.0 0.0 0.021 13.5 0.0 1.1 1 0 0 1 1 1 0 Extracellular matrix protein 1 (ECM1) Glyco_hydro_1 PF00232.13 gi|305663317|ref|YP_003859605.1| - 1e-63 215.1 0.0 2.2e-37 128.3 0.0 3.1 2 1 1 3 3 3 3 Glycosyl hydrolase family 1 Cellulase PF00150.13 gi|305663317|ref|YP_003859605.1| - 0.092 11.9 0.1 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Cellulase (glycosyl hydrolase family 5) BChl_A PF02327.12 gi|305663317|ref|YP_003859605.1| - 0.097 11.2 0.0 0.16 10.5 0.0 1.2 1 0 0 1 1 1 0 Bacteriochlorophyll A protein Glyco_hydro_3 PF00933.16 gi|305663318|ref|YP_003859606.1| - 3.4e-71 239.6 0.0 5.4e-71 239.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|305663318|ref|YP_003859606.1| - 1.7e-44 152.0 0.0 2.5e-44 151.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|305663318|ref|YP_003859606.1| - 2.1e-23 82.0 0.0 4.4e-23 80.9 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Lactamase_B PF00753.22 gi|305663319|ref|YP_003859607.1| - 2.2e-19 69.8 0.4 3.2e-19 69.3 0.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Flavodoxin_1 PF00258.20 gi|305663319|ref|YP_003859607.1| - 0.00011 22.1 0.0 0.00061 19.8 0.0 2.2 2 1 0 2 2 2 1 Flavodoxin Flavodoxin_5 PF12724.2 gi|305663319|ref|YP_003859607.1| - 0.0038 17.2 0.0 0.0067 16.4 0.0 1.4 1 0 0 1 1 1 1 Flavodoxin domain Lactamase_B_2 PF12706.2 gi|305663319|ref|YP_003859607.1| - 0.0077 15.7 0.1 0.023 14.2 0.0 1.7 1 1 1 2 2 2 1 Beta-lactamase superfamily domain T4_deiodinase PF00837.12 gi|305663319|ref|YP_003859607.1| - 0.014 14.4 0.0 0.028 13.4 0.0 1.5 1 0 0 1 1 1 0 Iodothyronine deiodinase SIS_2 PF13580.1 gi|305663319|ref|YP_003859607.1| - 0.022 14.4 0.0 0.35 10.5 0.0 2.6 3 0 0 3 3 3 0 SIS domain MarR_2 PF12802.2 gi|305663320|ref|YP_003859608.1| - 1.7e-05 24.4 0.0 3.1e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|305663320|ref|YP_003859608.1| - 0.00012 21.7 0.7 0.00021 20.9 0.5 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|305663320|ref|YP_003859608.1| - 0.0016 18.5 0.8 0.0034 17.4 0.6 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.1 gi|305663320|ref|YP_003859608.1| - 0.0062 16.8 0.2 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HxlR PF01638.12 gi|305663320|ref|YP_003859608.1| - 0.0067 16.0 0.7 0.0067 16.0 0.5 2.1 2 1 1 3 3 3 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|305663320|ref|YP_003859608.1| - 0.011 15.4 0.1 0.022 14.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_8 PF02954.14 gi|305663320|ref|YP_003859608.1| - 0.054 13.0 0.5 0.11 12.0 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_45 PF14947.1 gi|305663320|ref|YP_003859608.1| - 0.055 13.2 0.3 0.1 12.4 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Fe_dep_repress PF01325.14 gi|305663320|ref|YP_003859608.1| - 0.088 12.7 0.2 0.72 9.8 0.2 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|305663320|ref|YP_003859608.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|305663320|ref|YP_003859608.1| - 0.48 9.8 2.4 2.3 7.6 0.7 2.8 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF2540 PF10802.3 gi|305663320|ref|YP_003859608.1| - 0.75 9.5 6.7 14 5.3 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2540) CR6_interact PF10147.4 gi|305663321|ref|YP_003859609.1| - 0.012 14.9 1.2 0.016 14.5 0.8 1.1 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 UvsY PF11056.3 gi|305663321|ref|YP_003859609.1| - 0.023 14.8 0.2 0.43 10.7 0.1 2.1 2 0 0 2 2 2 0 Recombination, repair and ssDNA binding protein UvsY DevR PF01905.11 gi|305663322|ref|YP_003859610.1| - 2.1e-47 161.2 0.0 2.7e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 Cas_Cas5d PF09704.5 gi|305663323|ref|YP_003859611.1| - 0.0028 17.3 0.0 0.0039 16.8 0.0 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|305663324|ref|YP_003859612.1| - 2.5e-09 36.8 0.0 1.1e-07 31.4 0.0 2.6 2 1 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|305663324|ref|YP_003859612.1| - 0.00034 20.4 0.0 0.00084 19.1 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_19 PF13245.1 gi|305663324|ref|YP_003859612.1| - 0.0029 17.3 0.0 0.29 10.9 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain HD PF01966.17 gi|305663325|ref|YP_003859613.1| - 0.011 15.7 1.3 0.037 14.0 0.2 2.4 2 1 0 3 3 3 0 HD domain DUF2276 PF10040.4 gi|305663327|ref|YP_003859615.1| - 1.3e-18 67.3 0.0 1.9e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2276) Cas_Cas4 PF01930.12 gi|305663328|ref|YP_003859616.1| - 1.2e-14 54.5 0.5 2.1e-14 53.7 0.3 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|305663328|ref|YP_003859616.1| - 3.7e-10 39.6 0.9 6.7e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily DUF911 PF06023.7 gi|305663328|ref|YP_003859616.1| - 0.0015 17.8 0.0 0.0018 17.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF911) CRISPR_Cas2 PF09827.4 gi|305663329|ref|YP_003859617.1| - 1.4e-15 57.1 0.3 1.7e-15 56.9 0.2 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.11 gi|305663330|ref|YP_003859618.1| - 4.4e-64 216.2 0.0 6.3e-64 215.7 0.0 1.2 1 1 0 1 1 1 1 CRISPR associated protein Cas1 MerR PF00376.18 gi|305663330|ref|YP_003859618.1| - 0.044 13.3 0.0 0.1 12.1 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein DUF911 PF06023.7 gi|305663331|ref|YP_003859619.1| - 9.2e-63 212.1 0.0 1.3e-44 152.6 0.0 2.0 1 1 1 2 2 2 2 Archaeal protein of unknown function (DUF911) PDDEXK_1 PF12705.2 gi|305663331|ref|YP_003859619.1| - 0.0086 15.4 0.0 0.23 10.7 0.0 2.3 2 1 0 2 2 2 1 PD-(D/E)XK nuclease superfamily DUF751 PF05421.6 gi|305663333|ref|YP_003859621.1| - 0.0023 18.2 5.6 0.0023 18.2 3.9 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF751) DUF1097 PF06496.6 gi|305663333|ref|YP_003859621.1| - 0.078 12.7 5.2 0.55 10.0 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1097) EamA PF00892.15 gi|305663333|ref|YP_003859621.1| - 0.17 11.9 10.1 0.23 11.4 7.0 1.2 1 0 0 1 1 1 0 EamA-like transporter family Peptidase_A8 PF01252.13 gi|305663333|ref|YP_003859621.1| - 0.2 11.2 4.3 0.22 11.1 3.0 1.0 1 0 0 1 1 1 0 Signal peptidase (SPase) II MFS_1 PF07690.11 gi|305663333|ref|YP_003859621.1| - 0.38 9.4 10.4 0.41 9.3 7.2 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily DUF1212 PF06738.7 gi|305663333|ref|YP_003859621.1| - 0.51 9.7 4.0 0.58 9.5 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) SPC12 PF06645.8 gi|305663333|ref|YP_003859621.1| - 3 7.7 5.7 5.5 6.8 1.4 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF3353 PF11833.3 gi|305663333|ref|YP_003859621.1| - 3.2 7.1 5.8 4.1 6.8 3.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3353) DUF1049 PF06305.6 gi|305663333|ref|YP_003859621.1| - 5.5 6.5 13.0 0.33 10.4 1.9 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) PIN PF01850.16 gi|305663335|ref|YP_003859623.1| - 1.1e-09 38.6 1.1 1.5e-09 38.2 0.8 1.2 1 0 0 1 1 1 1 PIN domain HTH_Tnp_IS1 PF12759.2 gi|305663335|ref|YP_003859623.1| - 0.046 13.1 0.1 0.5 9.8 0.0 2.4 1 1 0 1 1 1 0 InsA C-terminal domain CcdA PF07362.7 gi|305663336|ref|YP_003859624.1| - 1.4e-05 24.9 1.0 2e-05 24.3 0.7 1.4 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA RHH_1 PF01402.16 gi|305663336|ref|YP_003859624.1| - 0.07 13.0 2.5 0.17 11.8 1.7 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family ASCH PF04266.9 gi|305663336|ref|YP_003859624.1| - 0.09 13.1 0.2 0.11 12.9 0.2 1.2 1 0 0 1 1 1 0 ASCH domain GP41 PF00517.12 gi|305663338|ref|YP_003859626.1| - 0.32 10.5 1.7 0.35 10.3 1.2 1.0 1 0 0 1 1 1 0 Retroviral envelope protein DUF77 PF01910.12 gi|305663339|ref|YP_003859627.1| - 1.3e-25 88.8 0.2 1.5e-25 88.6 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 HGTP_anticodon PF03129.15 gi|305663339|ref|YP_003859627.1| - 0.0019 18.0 0.0 0.025 14.5 0.0 2.1 1 1 1 2 2 2 1 Anticodon binding domain Tropomyosin PF00261.15 gi|305663340|ref|YP_003859628.1| - 7.3e-07 28.5 22.3 2.2e-06 26.9 15.4 1.7 1 1 0 1 1 1 1 Tropomyosin Baculo_PEP_C PF04513.7 gi|305663340|ref|YP_003859628.1| - 1e-06 28.6 0.0 0.00092 19.0 0.0 2.8 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus EzrA PF06160.7 gi|305663340|ref|YP_003859628.1| - 1.2e-06 26.9 10.7 2.1e-05 22.9 1.5 2.7 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA RmuC PF02646.11 gi|305663340|ref|YP_003859628.1| - 1.4e-06 27.3 6.1 0.0032 16.3 0.2 3.3 1 1 3 4 4 4 4 RmuC family DUF3584 PF12128.3 gi|305663340|ref|YP_003859628.1| - 8.7e-06 23.3 6.8 1.1e-05 23.0 4.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Tropomyosin_1 PF12718.2 gi|305663340|ref|YP_003859628.1| - 9.4e-06 25.5 18.2 2.9e-05 23.9 5.4 2.9 2 1 1 3 3 2 2 Tropomyosin like IFT57 PF10498.4 gi|305663340|ref|YP_003859628.1| - 1.5e-05 23.9 5.1 2.7e-05 23.0 2.9 2.0 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 AAA_13 PF13166.1 gi|305663340|ref|YP_003859628.1| - 2.4e-05 23.0 6.6 4.2e-05 22.2 4.6 1.3 1 0 0 1 1 1 1 AAA domain IncA PF04156.9 gi|305663340|ref|YP_003859628.1| - 2.4e-05 23.9 16.3 0.00063 19.4 4.5 2.7 2 1 1 3 3 2 2 IncA protein DUF869 PF05911.6 gi|305663340|ref|YP_003859628.1| - 0.00015 20.1 4.3 0.00022 19.6 3.0 1.3 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) DUF1664 PF07889.7 gi|305663340|ref|YP_003859628.1| - 0.00029 20.6 8.3 0.0023 17.7 0.4 3.6 1 1 2 4 4 4 1 Protein of unknown function (DUF1664) Myosin_tail_1 PF01576.14 gi|305663340|ref|YP_003859628.1| - 0.00052 17.8 21.8 0.00088 17.1 15.1 1.4 1 0 0 1 1 1 1 Myosin tail DUF16 PF01519.11 gi|305663340|ref|YP_003859628.1| - 0.0006 19.9 6.4 0.026 14.7 3.2 3.2 1 1 1 2 2 2 1 Protein of unknown function DUF16 Laminin_II PF06009.7 gi|305663340|ref|YP_003859628.1| - 0.00062 19.5 5.6 0.041 13.6 0.2 3.2 2 1 3 5 5 4 2 Laminin Domain II Laminin_I PF06008.9 gi|305663340|ref|YP_003859628.1| - 0.00089 18.6 6.1 0.00089 18.6 4.2 2.4 2 1 1 3 3 2 2 Laminin Domain I DUF948 PF06103.6 gi|305663340|ref|YP_003859628.1| - 0.0011 18.7 0.4 8.3 6.3 0.1 4.3 2 1 2 5 5 4 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|305663340|ref|YP_003859628.1| - 0.0015 18.7 0.3 0.52 10.5 0.1 3.4 1 1 0 1 1 1 1 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|305663340|ref|YP_003859628.1| - 0.0015 16.9 8.2 0.16 10.3 0.8 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF342) BLOC1_2 PF10046.4 gi|305663340|ref|YP_003859628.1| - 0.0016 18.5 5.2 0.011 15.9 0.3 3.8 3 1 2 5 5 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec3_C PF09763.4 gi|305663340|ref|YP_003859628.1| - 0.0017 16.6 2.8 0.08 11.0 0.1 2.5 1 1 1 2 2 2 2 Exocyst complex component Sec3 Spc7 PF08317.6 gi|305663340|ref|YP_003859628.1| - 0.002 16.8 12.2 0.0025 16.5 2.9 2.2 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF2333 PF10095.4 gi|305663340|ref|YP_003859628.1| - 0.0024 16.5 0.5 0.0033 16.1 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2333) Hemagglutinin PF00509.13 gi|305663340|ref|YP_003859628.1| - 0.0028 15.8 11.8 0.15 10.1 2.1 3.4 1 1 2 3 3 3 2 Haemagglutinin WEMBL PF05701.6 gi|305663340|ref|YP_003859628.1| - 0.0028 16.1 11.0 0.0045 15.5 7.6 1.3 1 0 0 1 1 1 1 Weak chloroplast movement under blue light COG2 PF06148.6 gi|305663340|ref|YP_003859628.1| - 0.0034 17.2 8.7 2.8 7.8 4.0 3.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4164 PF13747.1 gi|305663340|ref|YP_003859628.1| - 0.0052 16.8 7.8 0.0052 16.8 5.4 3.7 1 1 2 3 3 2 1 Domain of unknown function (DUF4164) Reo_sigmaC PF04582.7 gi|305663340|ref|YP_003859628.1| - 0.0052 16.0 0.1 0.059 12.5 0.3 2.1 1 1 1 2 2 2 1 Reovirus sigma C capsid protein Fib_alpha PF08702.5 gi|305663340|ref|YP_003859628.1| - 0.0054 16.8 3.2 1.7 8.7 0.1 3.4 2 1 2 4 4 3 0 Fibrinogen alpha/beta chain family Corona_S2 PF01601.11 gi|305663340|ref|YP_003859628.1| - 0.0062 14.7 0.0 0.0087 14.2 0.0 1.2 1 0 0 1 1 1 1 Coronavirus S2 glycoprotein Nup54 PF13874.1 gi|305663340|ref|YP_003859628.1| - 0.0062 16.2 8.9 0.028 14.1 0.7 3.2 1 1 2 3 3 3 1 Nucleoporin complex subunit 54 FH2 PF02181.18 gi|305663340|ref|YP_003859628.1| - 0.0077 15.1 6.9 0.26 10.1 0.9 2.5 1 1 1 2 2 2 1 Formin Homology 2 Domain DUF3226 PF11536.3 gi|305663340|ref|YP_003859628.1| - 0.0087 15.5 2.4 0.14 11.6 0.1 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF3226) ADIP PF11559.3 gi|305663340|ref|YP_003859628.1| - 0.0088 15.9 13.2 0.046 13.6 0.5 3.9 3 2 0 4 4 3 1 Afadin- and alpha -actinin-Binding FlaC_arch PF05377.6 gi|305663340|ref|YP_003859628.1| - 0.0096 15.7 15.2 0.39 10.6 0.3 5.7 2 1 4 6 6 6 1 Flagella accessory protein C (FlaC) Allexi_40kDa PF05549.6 gi|305663340|ref|YP_003859628.1| - 0.01 15.1 1.4 0.12 11.5 0.1 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein AATF-Che1 PF13339.1 gi|305663340|ref|YP_003859628.1| - 0.011 15.9 2.5 0.87 9.7 1.8 2.7 1 1 0 1 1 1 0 Apoptosis antagonizing transcription factor Exonuc_VII_L PF02601.10 gi|305663340|ref|YP_003859628.1| - 0.015 14.5 3.3 0.18 10.9 0.8 2.0 1 1 1 2 2 2 0 Exonuclease VII, large subunit Occludin_ELL PF07303.8 gi|305663340|ref|YP_003859628.1| - 0.015 15.9 12.3 7.4 7.3 0.4 4.6 2 1 1 4 4 3 0 Occludin homology domain Lectin_N PF03954.9 gi|305663340|ref|YP_003859628.1| - 0.016 14.5 0.1 0.18 11.2 0.1 2.4 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain TMPIT PF07851.8 gi|305663340|ref|YP_003859628.1| - 0.017 14.2 3.8 0.34 9.9 0.8 2.1 1 1 1 2 2 2 0 TMPIT-like protein APG6 PF04111.7 gi|305663340|ref|YP_003859628.1| - 0.018 14.1 10.8 0.019 14.0 2.7 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 V_ATPase_I PF01496.14 gi|305663340|ref|YP_003859628.1| - 0.019 12.8 10.7 0.0074 14.2 4.9 1.8 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family TPR_MLP1_2 PF07926.7 gi|305663340|ref|YP_003859628.1| - 0.023 14.4 6.6 0.025 14.2 0.6 2.6 3 0 0 3 3 2 0 TPR/MLP1/MLP2-like protein MtrG PF04210.8 gi|305663340|ref|YP_003859628.1| - 0.024 14.2 19.3 5.9 6.6 0.0 5.8 2 2 2 4 4 4 0 Tetrahydromethanopterin S-methyltransferase, subunit G SlyX PF04102.7 gi|305663340|ref|YP_003859628.1| - 0.028 14.7 7.8 1 9.8 0.2 4.6 1 1 3 4 4 4 0 SlyX V-SNARE_C PF12352.3 gi|305663340|ref|YP_003859628.1| - 0.03 14.3 1.0 23 5.1 0.0 3.9 2 1 3 5 5 4 0 Snare region anchored in the vesicle membrane C-terminus TBPIP PF07106.8 gi|305663340|ref|YP_003859628.1| - 0.036 13.6 10.9 0.56 9.7 1.7 3.0 2 1 1 3 3 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WXG100 PF06013.7 gi|305663340|ref|YP_003859628.1| - 0.042 13.8 0.3 4.4 7.3 0.0 3.6 2 1 0 3 3 3 0 Proteins of 100 residues with WXG Apolipoprotein PF01442.13 gi|305663340|ref|YP_003859628.1| - 0.05 13.1 8.8 0.11 11.9 6.1 1.7 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain MscS_porin PF12795.2 gi|305663340|ref|YP_003859628.1| - 0.052 12.8 0.9 0.56 9.4 0.6 2.4 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain DUF4250 PF14056.1 gi|305663340|ref|YP_003859628.1| - 0.069 12.8 0.4 0.83 9.4 0.1 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) TelA PF05816.6 gi|305663340|ref|YP_003859628.1| - 0.088 11.5 6.9 1.2 7.7 0.9 2.3 1 1 1 2 2 2 0 Toxic anion resistance protein (TelA) Vac_Fusion PF02346.11 gi|305663340|ref|YP_003859628.1| - 0.096 12.1 21.1 0.62 9.5 0.3 5.5 3 2 3 6 6 5 0 Chordopoxvirus fusion protein Spectrin PF00435.16 gi|305663340|ref|YP_003859628.1| - 0.1 12.8 8.2 5.2 7.4 3.8 3.8 1 1 2 3 3 3 0 Spectrin repeat Spc24 PF08286.6 gi|305663340|ref|YP_003859628.1| - 0.11 12.2 10.3 0.29 10.8 1.0 3.5 2 2 1 3 3 3 0 Spc24 subunit of Ndc80 DUF2730 PF10805.3 gi|305663340|ref|YP_003859628.1| - 0.13 12.0 6.5 0.14 11.9 0.8 3.3 1 1 3 4 4 3 0 Protein of unknown function (DUF2730) phiKZ_IP PF12699.2 gi|305663340|ref|YP_003859628.1| - 0.14 11.0 7.2 0.68 8.7 4.6 2.2 1 1 0 1 1 1 0 phiKZ-like phage internal head proteins Snapin_Pallidin PF14712.1 gi|305663340|ref|YP_003859628.1| - 0.15 12.4 9.5 0.22 11.8 1.3 4.1 2 1 3 5 5 3 0 Snapin/Pallidin Matrilin_ccoil PF10393.4 gi|305663340|ref|YP_003859628.1| - 0.16 11.3 6.4 11 5.5 0.1 4.7 2 1 5 7 7 6 0 Trimeric coiled-coil oligomerisation domain of matrilin XhlA PF10779.4 gi|305663340|ref|YP_003859628.1| - 0.18 11.7 17.1 0.8 9.6 0.2 4.4 1 1 1 2 2 1 0 Haemolysin XhlA Prefoldin_2 PF01920.15 gi|305663340|ref|YP_003859628.1| - 0.19 11.4 15.4 5 6.9 2.0 5.1 2 1 3 5 5 5 0 Prefoldin subunit PMC2NT PF08066.7 gi|305663340|ref|YP_003859628.1| - 0.21 11.9 8.0 0.4 11.0 1.1 3.5 2 2 1 3 3 3 0 PMC2NT (NUC016) domain Nsp1_C PF05064.8 gi|305663340|ref|YP_003859628.1| - 0.23 11.1 5.2 0.18 11.4 0.6 2.9 2 1 1 3 3 2 0 Nsp1-like C-terminal region OmpH PF03938.9 gi|305663340|ref|YP_003859628.1| - 0.28 11.0 1.3 0.58 10.0 0.4 1.8 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Tho2 PF11262.3 gi|305663340|ref|YP_003859628.1| - 0.29 10.1 3.5 0.5 9.3 1.1 2.1 1 1 1 2 2 2 0 Transcription factor/nuclear export subunit protein 2 HemX PF04375.9 gi|305663340|ref|YP_003859628.1| - 0.31 9.5 2.6 1.8 7.1 1.4 2.2 1 1 0 1 1 1 0 HemX DUF922 PF06037.6 gi|305663340|ref|YP_003859628.1| - 0.35 10.1 6.6 0.11 11.7 1.7 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF922) DUF4298 PF14131.1 gi|305663340|ref|YP_003859628.1| - 0.35 10.7 3.3 40 4.1 0.0 4.4 2 1 3 6 6 5 0 Domain of unknown function (DUF4298) DUF4201 PF13870.1 gi|305663340|ref|YP_003859628.1| - 0.4 10.1 14.1 0.9 8.9 1.9 3.4 2 1 1 3 3 2 0 Domain of unknown function (DUF4201) Lipoprotein_7 PF01540.11 gi|305663340|ref|YP_003859628.1| - 0.44 9.5 9.9 4 6.4 5.9 2.4 1 1 1 2 2 2 0 Adhesin lipoprotein DUF3552 PF12072.3 gi|305663340|ref|YP_003859628.1| - 0.45 9.6 23.1 0.079 12.1 4.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DUF2360 PF10152.4 gi|305663340|ref|YP_003859628.1| - 0.46 10.7 2.3 5.5 7.2 0.1 2.9 2 1 1 3 3 2 0 Predicted coiled-coil domain-containing protein (DUF2360) UPF0184 PF03670.8 gi|305663340|ref|YP_003859628.1| - 0.48 10.6 8.2 1.3 9.2 1.1 4.0 2 1 2 4 4 2 0 Uncharacterised protein family (UPF0184) DUF3418 PF11898.3 gi|305663340|ref|YP_003859628.1| - 0.5 8.6 9.9 1.1 7.5 6.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3418) TMF_DNA_bd PF12329.3 gi|305663340|ref|YP_003859628.1| - 0.54 10.0 13.4 4.9 7.0 0.2 5.0 3 2 1 4 4 4 0 TATA element modulatory factor 1 DNA binding RPW8 PF05659.6 gi|305663340|ref|YP_003859628.1| - 0.6 9.6 5.1 3.8 7.0 0.9 2.7 1 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Atg14 PF10186.4 gi|305663340|ref|YP_003859628.1| - 0.63 8.9 10.9 0.85 8.5 2.9 2.6 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|305663340|ref|YP_003859628.1| - 0.85 9.5 25.3 0.44 10.5 3.1 3.9 2 1 2 4 4 3 0 Domain of unknown function (DUF4200) Syntaxin PF00804.20 gi|305663340|ref|YP_003859628.1| - 1 9.5 12.7 0.93 9.6 2.1 3.3 2 1 1 3 3 2 0 Syntaxin SNARE PF05739.14 gi|305663340|ref|YP_003859628.1| - 1.2 8.9 9.8 4.3 7.1 0.8 3.4 3 0 0 3 3 2 0 SNARE domain CALCOCO1 PF07888.6 gi|305663340|ref|YP_003859628.1| - 1.2 7.3 17.5 0.11 10.7 8.2 1.8 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like CENP-Q PF13094.1 gi|305663340|ref|YP_003859628.1| - 1.2 9.1 9.9 4.8 7.1 4.6 3.1 2 1 1 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit ATG16 PF08614.6 gi|305663340|ref|YP_003859628.1| - 1.3 8.8 13.4 3.1 7.5 6.2 2.9 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) Prefoldin PF02996.12 gi|305663340|ref|YP_003859628.1| - 1.3 8.6 12.1 2.1 7.9 0.2 4.9 2 1 4 6 6 5 0 Prefoldin subunit DUF2884 PF11101.3 gi|305663340|ref|YP_003859628.1| - 1.5 8.1 6.1 4.3 6.6 1.6 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2884) ISG65-75 PF11727.3 gi|305663340|ref|YP_003859628.1| - 1.8 7.5 6.0 9.2 5.2 0.4 2.2 1 1 1 2 2 2 0 Invariant surface glycoprotein Syntaxin_2 PF14523.1 gi|305663340|ref|YP_003859628.1| - 1.9 8.5 6.3 1.8 8.6 0.6 3.0 1 1 2 3 3 3 0 Syntaxin-like protein Synaptonemal_3 PF15191.1 gi|305663340|ref|YP_003859628.1| - 2.2 8.0 6.6 26 4.6 0.1 3.9 1 1 2 4 4 4 0 Synaptonemal complex central element protein 3 Tox-ODYAM1 PF15642.1 gi|305663340|ref|YP_003859628.1| - 2.9 6.4 7.8 0.76 8.3 2.9 1.7 1 1 0 1 1 1 0 Toxin in Odyssella and Amoebophilus Prefoldin_3 PF13758.1 gi|305663340|ref|YP_003859628.1| - 3.3 7.5 11.3 90 2.9 7.3 3.5 1 1 0 1 1 1 0 Prefoldin subunit Nup88 PF10168.4 gi|305663340|ref|YP_003859628.1| - 3.7 5.2 10.8 5 4.8 7.5 1.1 1 0 0 1 1 1 0 Nuclear pore component zf-C4H2 PF10146.4 gi|305663340|ref|YP_003859628.1| - 4.5 7.2 14.3 9.1 6.2 0.6 2.6 1 1 1 2 2 2 0 Zinc finger-containing protein Sugarporin_N PF11471.3 gi|305663340|ref|YP_003859628.1| - 4.6 6.9 11.0 5.1 6.8 0.1 3.7 3 1 1 4 4 2 0 Maltoporin periplasmic N-terminal extension ING PF12998.2 gi|305663340|ref|YP_003859628.1| - 4.9 7.4 9.6 1.9 8.7 2.9 2.5 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Rootletin PF15035.1 gi|305663340|ref|YP_003859628.1| - 6 6.8 18.0 3.9 7.4 1.3 3.1 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion DUF724 PF05266.9 gi|305663340|ref|YP_003859628.1| - 6 6.4 13.3 84 2.7 6.2 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) GrpE PF01025.14 gi|305663340|ref|YP_003859628.1| - 6.8 6.2 18.1 2.4 7.6 5.3 3.4 2 1 1 3 3 2 0 GrpE Flu_NS2 PF00601.14 gi|305663340|ref|YP_003859628.1| - 9.1 6.5 11.4 18 5.6 0.6 3.6 1 1 1 3 3 3 0 Influenza non-structural protein (NS2) WASH_WAHD PF11945.3 gi|305663340|ref|YP_003859628.1| - 9.1 5.4 7.5 2e+02 1.0 5.1 2.4 1 1 0 1 1 1 0 WAHD domain of WASH complex CENP-F_leu_zip PF10473.4 gi|305663340|ref|YP_003859628.1| - 9.3 6.1 21.1 1.2 8.9 4.4 2.8 2 1 1 3 3 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMEMspv1-c74-12 PF11044.3 gi|305663341|ref|YP_003859629.1| - 0.0017 17.8 0.6 0.0026 17.2 0.4 1.3 1 0 0 1 1 1 1 Plectrovirus spv1-c74 ORF 12 transmembrane protein SKG6 PF08693.5 gi|305663341|ref|YP_003859629.1| - 0.0028 16.9 1.3 0.0045 16.2 0.9 1.4 1 0 0 1 1 1 1 Transmembrane alpha-helix domain DUF4293 PF14126.1 gi|305663341|ref|YP_003859629.1| - 0.0058 16.5 0.4 0.0063 16.4 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4293) BCD PF15461.1 gi|305663341|ref|YP_003859629.1| - 0.023 14.1 0.1 0.026 13.9 0.1 1.0 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase DUF4381 PF14316.1 gi|305663341|ref|YP_003859629.1| - 0.033 14.2 0.5 0.041 13.9 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) DUF3784 PF12650.2 gi|305663341|ref|YP_003859629.1| - 0.035 14.0 1.7 0.04 13.8 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) BatD PF13584.1 gi|305663341|ref|YP_003859629.1| - 0.039 12.5 0.1 0.039 12.5 0.1 1.1 1 0 0 1 1 1 0 Oxygen tolerance RCR PF12273.3 gi|305663341|ref|YP_003859629.1| - 0.049 14.1 2.0 0.061 13.8 1.4 1.1 1 0 0 1 1 1 0 Chitin synthesis regulation, resistance to Congo red DUF347 PF03988.7 gi|305663341|ref|YP_003859629.1| - 0.051 13.4 0.6 0.092 12.6 0.4 1.6 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) Adeno_GP19K PF04881.8 gi|305663341|ref|YP_003859629.1| - 0.081 12.6 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 Adenovirus GP19K TMEM154 PF15102.1 gi|305663341|ref|YP_003859629.1| - 0.092 12.4 0.3 0.093 12.4 0.2 1.1 1 0 0 1 1 1 0 TMEM154 protein family Rifin_STEVOR PF02009.11 gi|305663341|ref|YP_003859629.1| - 0.11 12.1 5.4 0.11 12.1 3.7 1.1 1 0 0 1 1 1 0 Rifin/stevor family Gram_pos_anchor PF00746.16 gi|305663341|ref|YP_003859629.1| - 1 9.2 2.9 12 5.8 2.0 2.1 1 1 0 1 1 1 0 Gram positive anchor GerPB PF10803.3 gi|305663342|ref|YP_003859630.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.4 1 0 0 1 1 1 0 Spore germination GerPB NAD_synthase PF02540.12 gi|305663343|ref|YP_003859631.1| - 7.8e-73 244.3 0.0 9.3e-73 244.0 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|305663343|ref|YP_003859631.1| - 6e-06 25.0 0.0 0.015 13.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.8 gi|305663343|ref|YP_003859631.1| - 0.13 11.5 0.0 0.21 10.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC HMGL-like PF00682.14 gi|305663344|ref|YP_003859632.1| - 5e-33 114.7 0.0 6.8e-33 114.2 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Gln-synt_C PF00120.19 gi|305663345|ref|YP_003859633.1| - 2.2e-86 289.2 0.0 2.6e-86 288.9 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|305663345|ref|YP_003859633.1| - 6.9e-19 67.2 0.0 1.4e-18 66.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Glu_synthase PF01645.12 gi|305663346|ref|YP_003859634.1| - 5.4e-12 45.3 0.4 1.7e-09 37.1 0.0 2.1 2 0 0 2 2 2 2 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|305663346|ref|YP_003859634.1| - 0.039 12.7 0.1 5.3 5.7 0.0 2.2 2 0 0 2 2 2 0 FMN-dependent dehydrogenase Aminotran_1_2 PF00155.16 gi|305663347|ref|YP_003859635.1| - 5.4e-48 163.7 0.0 6.1e-48 163.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.2 gi|305663347|ref|YP_003859635.1| - 1.2e-07 30.6 0.0 1.1e-06 27.4 0.0 1.9 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_5 PF00266.14 gi|305663347|ref|YP_003859635.1| - 2.2e-07 29.9 0.0 4e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|305663347|ref|YP_003859635.1| - 0.00013 21.1 0.0 0.00021 20.4 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|305663347|ref|YP_003859635.1| - 0.003 15.8 0.0 0.0048 15.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|305663347|ref|YP_003859635.1| - 0.072 12.2 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Glyco_hydro_1 PF00232.13 gi|305663348|ref|YP_003859636.1| - 2.9e-66 223.5 0.5 2.4e-55 187.5 0.0 3.1 2 1 0 2 2 2 2 Glycosyl hydrolase family 1 Glyco_hydro_3 PF00933.16 gi|305663349|ref|YP_003859637.1| - 2.1e-81 273.1 0.0 2.8e-81 272.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|305663349|ref|YP_003859637.1| - 6.3e-65 218.8 0.0 1.2e-64 217.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|305663349|ref|YP_003859637.1| - 8.7e-24 83.2 0.0 1.9e-23 82.1 0.0 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain CARDB PF07705.6 gi|305663349|ref|YP_003859637.1| - 0.027 14.5 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 CARDB HEPN PF05168.9 gi|305663349|ref|YP_003859637.1| - 0.055 13.3 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 HEPN domain T2SE_Nter PF05157.10 gi|305663349|ref|YP_003859637.1| - 0.091 12.8 0.0 0.85 9.6 0.0 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein E, N-terminal domain AP_endonuc_2 PF01261.19 gi|305663350|ref|YP_003859638.1| - 1.9e-24 86.1 0.1 5.8e-24 84.5 0.1 1.6 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|305663350|ref|YP_003859638.1| - 0.015 14.3 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 Polysacc_deac_1 PF01522.16 gi|305663351|ref|YP_003859639.1| - 3.8e-20 71.7 0.0 7.4e-20 70.8 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase Lipase_GDSL_2 PF13472.1 gi|305663352|ref|YP_003859640.1| - 2.3e-23 83.2 0.0 2.6e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|305663352|ref|YP_003859640.1| - 4.5e-17 62.6 0.0 5.1e-17 62.4 0.0 1.0 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase Amidohydro_3 PF07969.6 gi|305663353|ref|YP_003859641.1| - 2e-98 330.2 0.0 2.3e-98 330.0 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.15 gi|305663353|ref|YP_003859641.1| - 5.6e-11 42.6 0.3 3.7e-09 36.6 0.2 2.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|305663353|ref|YP_003859641.1| - 2e-09 37.1 0.0 7.9e-09 35.2 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|305663353|ref|YP_003859641.1| - 1.1e-07 32.1 0.0 0.00039 20.5 0.0 2.6 3 0 0 3 3 3 2 Amidohydrolase UxaC PF02614.9 gi|305663354|ref|YP_003859642.1| - 1.9e-26 92.7 0.0 2.3e-26 92.4 0.0 1.1 1 0 0 1 1 1 1 Glucuronate isomerase Amidohydro_2 PF04909.9 gi|305663354|ref|YP_003859642.1| - 0.051 13.1 0.1 0.16 11.4 0.0 1.8 1 1 0 1 1 1 0 Amidohydrolase DUF4234 PF14018.1 gi|305663355|ref|YP_003859643.1| - 2.3e-18 65.6 11.1 1.7e-11 43.6 0.1 4.0 2 2 1 3 3 3 3 Domain of unknown function (DUF4234) Yip1 PF04893.12 gi|305663355|ref|YP_003859643.1| - 3e-05 23.6 3.8 0.043 13.3 0.0 2.4 2 0 0 2 2 2 2 Yip1 domain DUF2207 PF09972.4 gi|305663355|ref|YP_003859643.1| - 0.00049 18.8 2.8 0.00049 18.8 2.0 2.5 1 1 1 2 2 2 1 Predicted membrane protein (DUF2207) SNARE_assoc PF09335.6 gi|305663355|ref|YP_003859643.1| - 0.0012 19.0 8.3 0.11 12.7 0.7 2.8 1 1 0 2 2 2 2 SNARE associated Golgi protein IncA PF04156.9 gi|305663355|ref|YP_003859643.1| - 0.0037 16.8 1.0 0.0095 15.5 0.4 1.9 2 0 0 2 2 2 1 IncA protein Vpu PF00558.14 gi|305663355|ref|YP_003859643.1| - 0.0067 15.9 1.0 2.8 7.5 0.0 3.1 3 0 0 3 3 3 1 Vpu protein DUF1129 PF06570.6 gi|305663355|ref|YP_003859643.1| - 0.0078 15.5 4.8 0.41 9.9 0.4 3.1 2 1 0 3 3 3 1 Protein of unknown function (DUF1129) RseC_MucC PF04246.7 gi|305663355|ref|YP_003859643.1| - 0.016 14.7 5.5 0.47 10.0 0.0 2.8 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC TRP PF06011.7 gi|305663355|ref|YP_003859643.1| - 0.018 13.6 0.8 0.076 11.5 0.1 2.3 1 1 1 2 2 2 0 Transient receptor potential (TRP) ion channel GPI2 PF06432.6 gi|305663355|ref|YP_003859643.1| - 0.021 14.1 2.5 0.046 13.0 0.2 2.0 1 1 1 2 2 2 0 Phosphatidylinositol N-acetylglucosaminyltransferase DUF4381 PF14316.1 gi|305663355|ref|YP_003859643.1| - 0.039 14.0 1.3 24 5.0 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) DUF1469 PF07332.6 gi|305663355|ref|YP_003859643.1| - 0.061 13.0 0.2 0.061 13.0 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1469) MSC PF09402.5 gi|305663355|ref|YP_003859643.1| - 0.069 11.8 4.6 1.8 7.2 0.1 2.7 2 1 1 3 3 3 0 Man1-Src1p-C-terminal domain DUF2189 PF09955.4 gi|305663355|ref|YP_003859643.1| - 0.074 12.9 0.1 0.074 12.9 0.1 3.0 1 1 1 3 3 3 0 Predicted integral membrane protein (DUF2189) DUF2393 PF09624.5 gi|305663355|ref|YP_003859643.1| - 0.29 10.6 7.5 3.1 7.2 0.0 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2393) UPF0104 PF03706.8 gi|305663355|ref|YP_003859643.1| - 0.46 9.7 9.5 3.1 6.9 0.5 2.1 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0104) FixQ PF05545.6 gi|305663355|ref|YP_003859643.1| - 0.81 9.3 15.9 0.13 11.9 0.4 3.8 3 1 1 4 4 3 0 Cbb3-type cytochrome oxidase component FixQ Sre PF03125.13 gi|305663355|ref|YP_003859643.1| - 0.95 8.3 8.3 0.32 9.8 2.1 2.2 2 1 0 2 2 2 0 C. elegans Sre G protein-coupled chemoreceptor RIC3 PF15361.1 gi|305663355|ref|YP_003859643.1| - 1.4 9.1 5.2 43 4.2 0.2 3.0 1 1 1 3 3 3 0 Resistance to inhibitors of cholinesterase homologue 3 Tmemb_cc2 PF10267.4 gi|305663355|ref|YP_003859643.1| - 1.6 7.2 4.8 3.2 6.2 0.0 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DUF3043 PF11241.3 gi|305663355|ref|YP_003859643.1| - 1.8 8.1 4.0 1.4 8.5 1.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3043) Trep_Strep PF09605.5 gi|305663355|ref|YP_003859643.1| - 2.3 7.8 12.7 1.6 8.3 5.3 2.6 3 0 0 3 3 3 0 Hypothetical bacterial integral membrane protein (Trep_Strep) zf-DHHC PF01529.15 gi|305663355|ref|YP_003859643.1| - 5.4 6.3 5.6 20 4.5 3.4 2.2 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF2628 PF10947.3 gi|305663355|ref|YP_003859643.1| - 5.9 6.7 6.8 24 4.7 1.8 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2628) MgtE PF01769.11 gi|305663356|ref|YP_003859644.1| - 9e-25 87.5 8.7 2e-24 86.3 6.1 1.6 1 0 0 1 1 1 1 Divalent cation transporter CBS PF00571.23 gi|305663356|ref|YP_003859644.1| - 7.9e-19 67.1 1.4 7.4e-09 35.2 0.4 3.0 2 0 0 2 2 2 2 CBS domain MgtE_N PF03448.12 gi|305663356|ref|YP_003859644.1| - 2.2e-12 47.1 0.3 1e-11 45.0 0.1 2.1 1 1 0 1 1 1 1 MgtE intracellular N domain Herpes_glycop PF01528.11 gi|305663356|ref|YP_003859644.1| - 0.021 13.5 0.9 0.032 12.9 0.6 1.2 1 0 0 1 1 1 0 Herpesvirus glycoprotein M ABC_membrane PF00664.18 gi|305663357|ref|YP_003859645.1| - 7.8e-42 143.5 22.5 1.1e-41 143.1 15.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|305663357|ref|YP_003859645.1| - 1.5e-35 122.4 0.0 2.4e-35 121.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663357|ref|YP_003859645.1| - 1.4e-06 28.4 1.2 1.5e-05 25.1 0.1 2.7 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|305663357|ref|YP_003859645.1| - 5.2e-06 25.8 0.0 0.0022 17.2 0.0 2.4 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305663357|ref|YP_003859645.1| - 3.1e-05 24.0 0.0 7.2e-05 22.8 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|305663357|ref|YP_003859645.1| - 4.1e-05 22.8 0.0 7.2e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|305663357|ref|YP_003859645.1| - 0.00014 21.9 0.4 0.002 18.2 0.1 2.8 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|305663357|ref|YP_003859645.1| - 0.0022 17.4 0.1 0.031 13.7 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|305663357|ref|YP_003859645.1| - 0.0026 18.5 0.4 0.0085 16.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|305663357|ref|YP_003859645.1| - 0.0078 15.8 0.0 0.34 10.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|305663357|ref|YP_003859645.1| - 0.016 14.3 0.0 0.056 12.5 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.1 gi|305663357|ref|YP_003859645.1| - 0.019 14.3 0.4 0.17 11.2 0.3 2.2 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305663357|ref|YP_003859645.1| - 0.019 13.8 0.1 0.069 12.0 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|305663357|ref|YP_003859645.1| - 0.025 14.0 0.0 0.061 12.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|305663357|ref|YP_003859645.1| - 0.031 14.2 0.9 0.1 12.5 0.1 2.2 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit RuvA_C PF07499.8 gi|305663357|ref|YP_003859645.1| - 0.031 14.4 1.0 0.093 12.9 0.1 2.2 3 0 0 3 3 2 0 RuvA, C-terminal domain IstB_IS21 PF01695.12 gi|305663357|ref|YP_003859645.1| - 0.044 13.2 0.1 0.42 9.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|305663357|ref|YP_003859645.1| - 0.047 13.6 0.0 0.12 12.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|305663357|ref|YP_003859645.1| - 0.051 13.2 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B cobW PF02492.14 gi|305663357|ref|YP_003859645.1| - 0.11 11.9 0.2 0.45 9.9 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_19 PF13245.1 gi|305663357|ref|YP_003859645.1| - 0.12 12.1 0.1 0.28 10.9 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|305663357|ref|YP_003859645.1| - 0.16 12.1 2.0 1.9 8.6 0.4 2.9 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|305663357|ref|YP_003859645.1| - 0.19 11.6 0.0 0.55 10.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|305663358|ref|YP_003859646.1| - 6.7e-39 133.3 0.0 1.3e-38 132.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|305663358|ref|YP_003859646.1| - 2e-35 122.5 28.3 2.6e-35 122.2 19.6 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|305663358|ref|YP_003859646.1| - 2.6e-09 37.4 0.3 2.6e-09 37.4 0.2 3.3 2 2 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|305663358|ref|YP_003859646.1| - 2.4e-07 31.5 0.2 7.5e-07 29.9 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|305663358|ref|YP_003859646.1| - 3.9e-05 23.5 0.0 0.00012 21.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663358|ref|YP_003859646.1| - 0.00011 22.4 0.1 0.00038 20.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663358|ref|YP_003859646.1| - 0.00012 22.0 0.0 0.00024 21.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|305663358|ref|YP_003859646.1| - 0.00057 19.1 0.0 0.48 9.6 0.0 2.3 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|305663358|ref|YP_003859646.1| - 0.00071 19.7 0.0 0.0034 17.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|305663358|ref|YP_003859646.1| - 0.0011 18.6 0.0 0.0029 17.3 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_24 PF13479.1 gi|305663358|ref|YP_003859646.1| - 0.0012 18.4 0.1 0.0038 16.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|305663358|ref|YP_003859646.1| - 0.0015 18.0 0.0 0.0041 16.6 0.0 1.7 1 0 0 1 1 1 1 AAA-like domain AAA PF00004.24 gi|305663358|ref|YP_003859646.1| - 0.0021 18.2 0.0 0.018 15.2 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|305663358|ref|YP_003859646.1| - 0.0023 17.4 0.0 0.0057 16.1 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain T2SE PF00437.15 gi|305663358|ref|YP_003859646.1| - 0.0036 16.2 0.0 0.0068 15.3 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein NTPase_1 PF03266.10 gi|305663358|ref|YP_003859646.1| - 0.0046 16.6 0.1 0.088 12.5 0.0 2.4 2 0 0 2 2 2 1 NTPase AAA_33 PF13671.1 gi|305663358|ref|YP_003859646.1| - 0.0048 16.7 0.0 0.0098 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305663358|ref|YP_003859646.1| - 0.0049 15.9 1.6 2.2 7.2 1.8 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.1 gi|305663358|ref|YP_003859646.1| - 0.0053 16.7 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|305663358|ref|YP_003859646.1| - 0.0055 16.1 0.0 0.012 15.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|305663358|ref|YP_003859646.1| - 0.0057 15.7 0.0 0.011 14.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|305663358|ref|YP_003859646.1| - 0.0088 15.2 0.0 0.041 13.0 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|305663358|ref|YP_003859646.1| - 0.0091 15.9 0.0 0.024 14.6 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|305663358|ref|YP_003859646.1| - 0.028 14.9 0.0 0.076 13.5 0.0 1.8 1 0 0 1 1 1 0 Miro-like protein AAA_5 PF07728.9 gi|305663358|ref|YP_003859646.1| - 0.03 14.0 0.0 0.075 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|305663358|ref|YP_003859646.1| - 0.031 13.9 0.1 0.087 12.5 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase ABC_ATPase PF09818.4 gi|305663358|ref|YP_003859646.1| - 0.036 12.6 0.0 0.89 8.0 0.0 2.6 2 1 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.14 gi|305663358|ref|YP_003859646.1| - 0.042 13.2 0.0 0.079 12.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_23 PF13476.1 gi|305663358|ref|YP_003859646.1| - 0.045 14.0 0.1 0.096 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663358|ref|YP_003859646.1| - 0.049 13.2 0.0 0.093 12.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain DUF3987 PF13148.1 gi|305663358|ref|YP_003859646.1| - 0.059 11.9 0.0 0.1 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_30 PF13604.1 gi|305663358|ref|YP_003859646.1| - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|305663358|ref|YP_003859646.1| - 0.1 11.4 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 Adeno_IVa2 PF02456.10 gi|305663358|ref|YP_003859646.1| - 0.12 11.0 1.4 0.21 10.2 0.0 2.0 3 0 0 3 3 3 0 Adenovirus IVa2 protein Mg_chelatase PF01078.16 gi|305663358|ref|YP_003859646.1| - 0.15 11.2 0.0 0.28 10.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Viral_helicase1 PF01443.13 gi|305663358|ref|YP_003859646.1| - 0.19 11.2 0.0 0.3 10.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|305663360|ref|YP_003859648.1| - 2.3e-24 86.2 0.0 3.4e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663360|ref|YP_003859648.1| - 3.2e-18 66.7 2.7 5.7e-11 42.9 0.0 2.5 2 1 1 3 3 3 2 AAA domain SMC_N PF02463.14 gi|305663360|ref|YP_003859648.1| - 1.7e-05 24.1 0.1 0.033 13.4 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305663360|ref|YP_003859648.1| - 0.00016 22.0 0.5 0.00023 21.5 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305663360|ref|YP_003859648.1| - 0.00039 19.8 0.1 0.00066 19.1 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|305663360|ref|YP_003859648.1| - 0.0019 18.9 0.2 0.0042 17.8 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305663360|ref|YP_003859648.1| - 0.0031 16.6 0.0 0.51 9.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain SRP54 PF00448.17 gi|305663360|ref|YP_003859648.1| - 0.0037 16.7 0.0 0.0059 16.0 0.0 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|305663360|ref|YP_003859648.1| - 0.0044 16.7 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|305663360|ref|YP_003859648.1| - 0.0085 16.2 0.0 0.023 14.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305663360|ref|YP_003859648.1| - 0.011 15.9 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|305663360|ref|YP_003859648.1| - 0.012 15.6 0.1 0.025 14.5 0.0 1.5 2 0 0 2 2 1 0 AAA domain AAA_16 PF13191.1 gi|305663360|ref|YP_003859648.1| - 0.027 14.4 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.1 gi|305663360|ref|YP_003859648.1| - 0.052 13.8 0.0 0.1 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Peptidase_M44 PF03410.8 gi|305663360|ref|YP_003859648.1| - 0.053 11.7 0.0 0.06 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein G1 AAA_19 PF13245.1 gi|305663360|ref|YP_003859648.1| - 0.069 12.9 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_10 PF12846.2 gi|305663360|ref|YP_003859648.1| - 0.11 11.8 0.0 2.3 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|305663360|ref|YP_003859648.1| - 0.13 11.7 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC2_membrane_3 PF12698.2 gi|305663361|ref|YP_003859649.1| - 1.3e-22 80.3 37.0 1.6e-22 79.9 25.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|305663361|ref|YP_003859649.1| - 8.9e-08 31.3 36.0 2.1e-06 26.8 24.0 2.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305663361|ref|YP_003859649.1| - 0.05 12.7 50.7 0.015 14.5 15.6 2.4 1 1 0 2 2 2 0 ABC-2 family transporter protein Phosphorylase PF00343.15 gi|305663362|ref|YP_003859650.1| - 2.7e-07 28.9 0.1 7.7e-07 27.4 0.0 1.6 2 0 0 2 2 2 1 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|305663362|ref|YP_003859650.1| - 0.0027 17.1 0.0 0.0065 15.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|305663362|ref|YP_003859650.1| - 0.0027 17.8 0.0 0.0059 16.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DsbB PF02600.11 gi|305663363|ref|YP_003859651.1| - 0.19 11.5 6.5 0.22 11.2 4.5 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB K1 PF02960.9 gi|305663363|ref|YP_003859651.1| - 0.91 9.5 3.4 1.2 9.1 2.4 1.4 1 1 0 1 1 1 0 K1 glycoprotein Tetraspannin PF00335.15 gi|305663363|ref|YP_003859651.1| - 4.8 6.4 11.4 5.9 6.0 7.9 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF4131 PF13567.1 gi|305663363|ref|YP_003859651.1| - 5.7 6.3 6.0 6.6 6.1 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) ABC_tran PF00005.22 gi|305663364|ref|YP_003859652.1| - 5.9e-34 117.3 0.0 8e-34 116.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305663364|ref|YP_003859652.1| - 6.6e-23 80.8 1.0 1.1e-22 80.1 0.7 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305663364|ref|YP_003859652.1| - 2.9e-09 37.3 0.5 9e-05 22.5 0.1 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305663364|ref|YP_003859652.1| - 0.00032 20.8 1.2 0.0032 17.6 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305663364|ref|YP_003859652.1| - 0.0036 16.8 0.0 0.0067 15.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305663364|ref|YP_003859652.1| - 0.011 15.6 0.0 0.044 13.7 0.0 1.9 2 1 0 2 2 2 0 AAA ATPase domain AAA_13 PF13166.1 gi|305663364|ref|YP_003859652.1| - 0.026 12.9 0.6 0.098 11.1 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.1 gi|305663364|ref|YP_003859652.1| - 0.027 15.2 0.1 0.047 14.5 0.1 1.6 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|305663364|ref|YP_003859652.1| - 0.034 13.3 0.1 2.4 7.3 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_19 PF13245.1 gi|305663364|ref|YP_003859652.1| - 0.039 13.6 0.0 0.094 12.4 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_23 PF13476.1 gi|305663364|ref|YP_003859652.1| - 0.042 14.1 0.2 0.082 13.2 0.0 1.5 2 0 0 2 2 1 0 AAA domain DUF258 PF03193.11 gi|305663364|ref|YP_003859652.1| - 0.065 12.4 0.0 0.12 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 UPF0079 PF02367.12 gi|305663364|ref|YP_003859652.1| - 0.067 12.8 0.1 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Gtr1_RagA PF04670.7 gi|305663364|ref|YP_003859652.1| - 0.12 11.4 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region MobB PF03205.9 gi|305663364|ref|YP_003859652.1| - 0.13 11.9 0.4 0.25 11.0 0.1 1.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|305663364|ref|YP_003859652.1| - 0.14 12.4 1.5 0.38 11.0 1.0 1.8 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|305663365|ref|YP_003859653.1| - 1.1e-29 103.5 0.0 1.5e-29 103.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305663365|ref|YP_003859653.1| - 4.9e-21 74.8 0.2 7.7e-21 74.2 0.1 1.3 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305663365|ref|YP_003859653.1| - 1.6e-13 51.2 1.6 3.4e-11 43.6 1.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305663365|ref|YP_003859653.1| - 6.1e-07 28.8 0.0 4.3e-05 22.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305663365|ref|YP_003859653.1| - 5.8e-06 26.4 0.1 1.1e-05 25.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|305663365|ref|YP_003859653.1| - 1.2e-05 24.7 0.0 2e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|305663365|ref|YP_003859653.1| - 4.1e-05 23.3 0.0 0.00025 20.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|305663365|ref|YP_003859653.1| - 8.6e-05 22.6 0.1 0.0013 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|305663365|ref|YP_003859653.1| - 0.0004 19.9 0.2 0.021 14.2 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_18 PF13238.1 gi|305663365|ref|YP_003859653.1| - 0.00064 20.0 0.0 0.0014 18.9 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|305663365|ref|YP_003859653.1| - 0.0012 19.6 0.0 0.0025 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|305663365|ref|YP_003859653.1| - 0.0033 17.7 0.0 0.005 17.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|305663365|ref|YP_003859653.1| - 0.0037 17.0 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 MobB PF03205.9 gi|305663365|ref|YP_003859653.1| - 0.0053 16.4 0.0 0.012 15.3 0.0 1.6 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_15 PF13175.1 gi|305663365|ref|YP_003859653.1| - 0.0098 14.9 1.9 1.4 7.8 0.1 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_13 PF13166.1 gi|305663365|ref|YP_003859653.1| - 0.013 13.9 0.0 0.19 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|305663365|ref|YP_003859653.1| - 0.013 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|305663365|ref|YP_003859653.1| - 0.015 14.4 0.0 0.023 13.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.12 gi|305663365|ref|YP_003859653.1| - 0.017 14.5 0.1 0.043 13.2 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.18 gi|305663365|ref|YP_003859653.1| - 0.02 14.8 0.0 0.044 13.7 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase FtsK_SpoIIIE PF01580.13 gi|305663365|ref|YP_003859653.1| - 0.023 14.1 0.0 0.039 13.4 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|305663365|ref|YP_003859653.1| - 0.025 14.8 0.0 0.15 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|305663365|ref|YP_003859653.1| - 0.028 14.0 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Mg_chelatase PF01078.16 gi|305663365|ref|YP_003859653.1| - 0.031 13.4 0.0 0.081 12.0 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|305663365|ref|YP_003859653.1| - 0.032 13.7 0.0 0.062 12.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_33 PF13671.1 gi|305663365|ref|YP_003859653.1| - 0.036 13.9 0.0 0.07 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|305663365|ref|YP_003859653.1| - 0.038 13.3 0.0 0.23 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|305663365|ref|YP_003859653.1| - 0.048 13.2 0.0 0.071 12.6 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family APS_kinase PF01583.15 gi|305663365|ref|YP_003859653.1| - 0.062 12.9 0.0 0.22 11.1 0.0 2.0 3 0 0 3 3 2 0 Adenylylsulphate kinase SbcCD_C PF13558.1 gi|305663365|ref|YP_003859653.1| - 0.094 12.6 0.0 0.2 11.6 0.0 1.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ABC_ATPase PF09818.4 gi|305663365|ref|YP_003859653.1| - 0.12 10.9 0.0 2.9 6.3 0.0 2.3 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Dynamin_N PF00350.18 gi|305663365|ref|YP_003859653.1| - 0.12 12.1 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Dynamin family CPT PF07931.7 gi|305663365|ref|YP_003859653.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein BPD_transp_1 PF00528.17 gi|305663366|ref|YP_003859654.1| - 1.2e-19 70.5 13.3 1.2e-19 70.5 9.2 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305663366|ref|YP_003859654.1| - 0.0068 15.7 0.1 0.0068 15.7 0.1 2.3 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|305663367|ref|YP_003859655.1| - 1.1e-26 93.5 17.5 1.1e-26 93.5 12.2 2.3 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|305663368|ref|YP_003859656.1| - 3.7e-24 85.2 19.2 2.1e-22 79.4 0.1 3.3 3 1 0 3 3 3 2 Bacterial extracellular solute-binding proteins, family 5 Middle Trypan_PARP PF05887.6 gi|305663368|ref|YP_003859656.1| - 0.0063 16.3 8.4 0.014 15.2 5.8 1.5 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) UPF0154 PF03672.8 gi|305663368|ref|YP_003859656.1| - 0.044 13.4 1.5 0.12 12.0 1.0 1.8 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0154) Pex14_N PF04695.8 gi|305663368|ref|YP_003859656.1| - 0.2 11.6 0.7 0.44 10.5 0.5 1.5 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF1180 PF06679.7 gi|305663368|ref|YP_003859656.1| - 5.2 6.9 7.4 13 5.6 5.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DEC-1_N PF04625.8 gi|305663368|ref|YP_003859656.1| - 8.5 4.9 11.4 13 4.3 7.9 1.2 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region Translin PF01997.11 gi|305663369|ref|YP_003859657.1| - 1e-24 87.2 0.6 1.2e-24 87.0 0.4 1.1 1 0 0 1 1 1 1 Translin family BPL_LplA_LipB PF03099.14 gi|305663370|ref|YP_003859658.1| - 5.4e-20 71.6 0.0 8.4e-20 71.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|305663370|ref|YP_003859658.1| - 8.8e-13 47.6 0.0 2.9e-12 46.0 0.0 1.9 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|305663370|ref|YP_003859658.1| - 9.2e-06 25.2 2.3 1.8e-05 24.3 1.6 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain GntR PF00392.16 gi|305663370|ref|YP_003859658.1| - 0.0029 17.0 0.0 0.0071 15.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|305663370|ref|YP_003859658.1| - 0.025 14.6 0.1 0.1 12.7 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator BioY PF02632.9 gi|305663371|ref|YP_003859659.1| - 4.3e-26 91.3 14.5 9.6e-26 90.2 10.0 1.5 1 1 0 1 1 1 1 BioY family ABC_tran PF00005.22 gi|305663372|ref|YP_003859660.1| - 1.2e-32 113.0 0.0 2.2e-14 53.9 0.0 3.2 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305663372|ref|YP_003859660.1| - 4.5e-25 89.1 7.4 6.5e-07 29.5 0.0 4.2 2 2 0 3 3 3 3 AAA domain AAA_15 PF13175.1 gi|305663372|ref|YP_003859660.1| - 9.3e-11 41.4 4.1 9.3e-05 21.6 0.0 4.0 3 1 1 4 4 4 2 AAA ATPase domain AAA_22 PF13401.1 gi|305663372|ref|YP_003859660.1| - 2e-10 40.8 0.1 0.00099 19.2 0.0 2.7 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|305663372|ref|YP_003859660.1| - 9.2e-10 39.1 0.5 3.8e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663372|ref|YP_003859660.1| - 1.2e-09 37.7 0.4 0.045 12.9 0.0 4.1 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305663372|ref|YP_003859660.1| - 2e-08 33.6 0.0 0.001 18.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305663372|ref|YP_003859660.1| - 6.2e-08 32.8 0.0 0.0019 18.2 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain AAA_25 PF13481.1 gi|305663372|ref|YP_003859660.1| - 2.3e-07 30.4 0.0 0.28 10.5 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_10 PF12846.2 gi|305663372|ref|YP_003859660.1| - 4e-06 26.5 0.2 0.17 11.2 0.0 3.7 4 0 0 4 4 4 2 AAA-like domain NACHT PF05729.7 gi|305663372|ref|YP_003859660.1| - 4.8e-06 26.3 0.0 0.023 14.3 0.0 2.3 2 0 0 2 2 2 2 NACHT domain MobB PF03205.9 gi|305663372|ref|YP_003859660.1| - 8.7e-06 25.4 0.1 0.0011 18.6 0.0 2.6 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|305663372|ref|YP_003859660.1| - 2.2e-05 24.2 1.9 0.12 12.0 0.1 2.8 3 1 0 3 3 2 2 Archaeal ATPase Miro PF08477.8 gi|305663372|ref|YP_003859660.1| - 4.7e-05 23.8 0.2 0.039 14.4 0.0 2.8 3 0 0 3 3 2 1 Miro-like protein UPF0079 PF02367.12 gi|305663372|ref|YP_003859660.1| - 4.8e-05 22.9 0.1 0.2 11.3 0.0 2.5 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|305663372|ref|YP_003859660.1| - 9e-05 22.6 1.0 0.75 9.9 0.1 3.8 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|305663372|ref|YP_003859660.1| - 0.00012 21.2 0.0 0.031 13.4 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|305663372|ref|YP_003859660.1| - 0.00015 21.6 2.0 0.92 9.4 0.0 3.9 4 0 0 4 4 4 1 AAA domain KaiC PF06745.8 gi|305663372|ref|YP_003859660.1| - 0.00038 19.6 0.9 3.4 6.7 0.0 3.3 3 0 0 3 3 3 0 KaiC AAA_18 PF13238.1 gi|305663372|ref|YP_003859660.1| - 0.00065 20.0 0.9 1.2 9.4 0.0 3.4 3 0 0 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|305663372|ref|YP_003859660.1| - 0.00082 20.1 3.8 0.12 13.1 0.0 3.2 3 1 0 3 3 2 1 AAA domain T2SE PF00437.15 gi|305663372|ref|YP_003859660.1| - 0.00086 18.2 0.0 0.36 9.6 0.0 2.2 2 0 0 2 2 2 1 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|305663372|ref|YP_003859660.1| - 0.0015 17.7 0.1 1.3 8.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|305663372|ref|YP_003859660.1| - 0.0018 17.8 0.9 2.2 7.7 0.1 2.8 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.17 gi|305663372|ref|YP_003859660.1| - 0.0024 16.7 0.0 0.16 10.8 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|305663372|ref|YP_003859660.1| - 0.0025 17.3 0.0 0.85 9.0 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family RNA_helicase PF00910.17 gi|305663372|ref|YP_003859660.1| - 0.0025 17.9 0.1 2.6 8.2 0.0 3.0 3 0 0 3 3 2 1 RNA helicase cobW PF02492.14 gi|305663372|ref|YP_003859660.1| - 0.0037 16.7 1.2 0.13 11.6 0.1 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|305663372|ref|YP_003859660.1| - 0.0045 16.5 0.0 3.1 7.3 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_19 PF13245.1 gi|305663372|ref|YP_003859660.1| - 0.0054 16.4 0.1 0.56 10.0 0.0 2.4 2 0 0 2 2 2 1 Part of AAA domain ATP-synt_ab PF00006.20 gi|305663372|ref|YP_003859660.1| - 0.0068 15.9 0.6 1.5 8.2 0.1 2.4 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_33 PF13671.1 gi|305663372|ref|YP_003859660.1| - 0.014 15.2 0.1 0.12 12.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Pox_A32 PF04665.7 gi|305663372|ref|YP_003859660.1| - 0.017 14.4 0.2 0.66 9.2 0.0 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_5 PF07728.9 gi|305663372|ref|YP_003859660.1| - 0.019 14.7 0.1 2 8.1 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|305663372|ref|YP_003859660.1| - 0.023 14.5 0.1 6.7 6.6 0.0 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit G-alpha PF00503.15 gi|305663372|ref|YP_003859660.1| - 0.025 13.2 0.1 0.28 9.8 0.0 2.1 2 0 0 2 2 2 0 G-protein alpha subunit Zeta_toxin PF06414.7 gi|305663372|ref|YP_003859660.1| - 0.033 13.2 0.4 0.25 10.3 0.0 2.3 3 0 0 3 3 3 0 Zeta toxin AAA_13 PF13166.1 gi|305663372|ref|YP_003859660.1| - 0.038 12.4 1.6 1.4 7.3 0.0 3.1 4 0 0 4 4 4 0 AAA domain SRP54 PF00448.17 gi|305663372|ref|YP_003859660.1| - 0.038 13.4 0.0 0.45 9.9 0.0 2.6 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|305663372|ref|YP_003859660.1| - 0.042 13.5 0.3 0.37 10.4 0.2 2.6 2 1 0 2 2 2 0 NTPase ArgK PF03308.11 gi|305663372|ref|YP_003859660.1| - 0.057 12.1 0.0 0.79 8.4 0.0 2.1 2 0 0 2 2 2 0 ArgK protein PIF1 PF05970.9 gi|305663372|ref|YP_003859660.1| - 0.067 12.1 0.0 6.7 5.5 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase DUF815 PF05673.8 gi|305663372|ref|YP_003859660.1| - 0.072 11.9 0.8 7.6 5.3 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF815) MMR_HSR1 PF01926.18 gi|305663372|ref|YP_003859660.1| - 0.11 12.4 3.9 1.1 9.1 0.3 3.0 2 2 0 2 2 2 0 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|305663372|ref|YP_003859660.1| - 0.11 11.4 0.1 2.3 7.0 0.0 2.5 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ABC_ATPase PF09818.4 gi|305663372|ref|YP_003859660.1| - 0.12 10.9 0.4 0.99 7.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class KAP_NTPase PF07693.9 gi|305663372|ref|YP_003859660.1| - 0.12 11.3 0.0 9.4 5.1 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain Lipoprotein_9 PF03180.9 gi|305663372|ref|YP_003859660.1| - 0.12 11.2 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NLPA lipoprotein PhoH PF02562.11 gi|305663372|ref|YP_003859660.1| - 0.15 11.2 0.0 4.3 6.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein TrwB_AAD_bind PF10412.4 gi|305663372|ref|YP_003859660.1| - 0.2 10.2 1.2 1.1 7.7 0.1 2.4 3 0 0 3 3 3 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.1 gi|305663372|ref|YP_003859660.1| - 0.21 11.5 0.2 0.67 9.8 0.0 1.9 2 0 0 2 2 1 0 AAA domain DUF3584 PF12128.3 gi|305663372|ref|YP_003859660.1| - 0.22 8.7 0.0 0.3 8.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF87 PF01935.12 gi|305663372|ref|YP_003859660.1| - 0.27 10.9 6.2 0.82 9.4 0.7 3.0 2 1 1 3 3 3 0 Domain of unknown function DUF87 ABC2_membrane PF01061.19 gi|305663374|ref|YP_003859662.1| - 4.4e-11 42.3 25.9 4.4e-11 42.3 17.9 1.6 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|305663374|ref|YP_003859662.1| - 2.6e-10 39.8 37.2 8.4e-10 38.1 25.8 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305663374|ref|YP_003859662.1| - 0.0065 15.6 41.8 0.01 14.9 28.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|305663375|ref|YP_003859663.1| - 2.1e-25 89.6 0.0 2.9e-25 89.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663375|ref|YP_003859663.1| - 4.7e-11 43.2 3.5 1.2e-05 25.4 0.0 2.8 3 0 0 3 3 3 2 AAA domain Zeta_toxin PF06414.7 gi|305663375|ref|YP_003859663.1| - 2.9e-05 23.2 0.0 5.3e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_23 PF13476.1 gi|305663375|ref|YP_003859663.1| - 0.0011 19.3 0.1 0.0056 17.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663375|ref|YP_003859663.1| - 0.0039 17.3 0.0 0.036 14.2 0.0 2.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|305663375|ref|YP_003859663.1| - 0.004 16.3 0.0 0.0078 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|305663375|ref|YP_003859663.1| - 0.012 15.5 0.0 0.021 14.8 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|305663375|ref|YP_003859663.1| - 0.02 14.0 0.0 1.1 8.4 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|305663375|ref|YP_003859663.1| - 0.037 13.6 0.0 0.08 12.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|305663375|ref|YP_003859663.1| - 0.063 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|305663375|ref|YP_003859663.1| - 0.08 12.8 0.0 0.4 10.6 0.0 2.2 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Mg_chelatase PF01078.16 gi|305663375|ref|YP_003859663.1| - 0.083 12.0 0.0 0.55 9.3 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|305663375|ref|YP_003859663.1| - 0.11 12.2 0.0 0.3 10.8 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain DUF58 PF01882.13 gi|305663376|ref|YP_003859664.1| - 1.6e-13 50.5 0.0 5.1e-13 48.9 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function DUF58 VWA_CoxE PF05762.9 gi|305663376|ref|YP_003859664.1| - 0.062 12.4 0.3 0.88 8.6 0.0 2.1 1 1 0 2 2 2 0 VWA domain containing CoxE-like protein PRC PF05239.11 gi|305663377|ref|YP_003859665.1| - 0.00021 21.1 5.0 0.31 10.9 0.7 3.0 2 1 0 2 2 2 2 PRC-barrel domain GidB PF02527.10 gi|305663377|ref|YP_003859665.1| - 0.12 11.4 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 rRNA small subunit methyltransferase G AAA_3 PF07726.6 gi|305663378|ref|YP_003859666.1| - 7.7e-57 190.5 0.3 3.8e-55 185.0 0.2 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305663378|ref|YP_003859666.1| - 4.3e-10 39.4 0.0 2.6e-09 36.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|305663378|ref|YP_003859666.1| - 1.4e-05 25.2 0.2 0.00022 21.4 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|305663378|ref|YP_003859666.1| - 8.6e-05 21.4 1.2 0.033 13.0 0.1 2.8 2 2 0 2 2 2 2 MCM2/3/5 family RuvB_N PF05496.7 gi|305663378|ref|YP_003859666.1| - 0.00017 20.6 0.1 0.0049 15.9 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|305663378|ref|YP_003859666.1| - 0.0002 20.8 0.2 0.0017 17.8 0.0 2.3 2 1 0 2 2 2 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|305663378|ref|YP_003859666.1| - 0.00086 18.5 0.1 0.013 14.6 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|305663378|ref|YP_003859666.1| - 0.001 19.8 0.1 0.0049 17.6 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|305663378|ref|YP_003859666.1| - 0.029 14.0 0.1 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_25 PF13481.1 gi|305663378|ref|YP_003859666.1| - 0.081 12.3 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305663378|ref|YP_003859666.1| - 0.14 11.8 0.0 0.26 10.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|305663378|ref|YP_003859666.1| - 0.15 12.1 0.0 1.4 9.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|305663379|ref|YP_003859667.1| - 2.7e-25 89.2 0.0 5.2e-25 88.3 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663379|ref|YP_003859667.1| - 1.3e-13 51.6 6.1 3.7e-08 33.6 0.1 3.0 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|305663379|ref|YP_003859667.1| - 3.2e-06 26.4 3.0 0.0017 17.5 0.0 3.0 3 0 0 3 3 3 2 AAA ATPase domain DUF4162 PF13732.1 gi|305663379|ref|YP_003859667.1| - 0.00015 22.1 0.7 0.00027 21.3 0.5 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|305663379|ref|YP_003859667.1| - 0.00057 19.1 0.5 0.17 11.1 0.0 2.9 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305663379|ref|YP_003859667.1| - 0.00058 20.2 0.5 0.0047 17.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain CENP-X PF09415.5 gi|305663379|ref|YP_003859667.1| - 0.0049 16.6 0.1 0.016 15.0 0.0 1.8 1 0 0 1 1 1 1 CENP-S associating Centromere protein X AAA_29 PF13555.1 gi|305663379|ref|YP_003859667.1| - 0.0059 16.1 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|305663379|ref|YP_003859667.1| - 0.017 15.2 0.8 2.6 8.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|305663379|ref|YP_003859667.1| - 0.042 13.4 0.0 0.093 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|305663379|ref|YP_003859667.1| - 0.066 12.6 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.12 gi|305663379|ref|YP_003859667.1| - 0.068 12.5 0.1 2.5 7.4 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|305663379|ref|YP_003859667.1| - 0.071 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ATP_bind_1 PF03029.12 gi|305663379|ref|YP_003859667.1| - 0.078 12.4 0.0 0.16 11.4 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein HTH_Crp_2 PF13545.1 gi|305663379|ref|YP_003859667.1| - 0.081 12.7 0.4 1.3 8.8 0.0 2.9 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain AAA_17 PF13207.1 gi|305663379|ref|YP_003859667.1| - 0.084 13.6 0.8 0.46 11.3 0.0 2.4 1 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|305663379|ref|YP_003859667.1| - 0.1 12.5 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain HTH_36 PF13730.1 gi|305663379|ref|YP_003859667.1| - 0.13 12.3 0.1 10 6.3 0.0 2.8 3 0 0 3 3 2 0 Helix-turn-helix domain AAA PF00004.24 gi|305663379|ref|YP_003859667.1| - 0.14 12.3 0.4 0.58 10.3 0.3 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|305663379|ref|YP_003859667.1| - 0.16 11.3 0.5 0.33 10.3 0.1 1.8 2 1 0 2 2 2 0 AAA-like domain ABC2_membrane_4 PF12730.2 gi|305663380|ref|YP_003859668.1| - 0.0004 19.6 37.6 0.00057 19.1 26.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|305663380|ref|YP_003859668.1| - 0.0025 16.7 30.9 0.0072 15.2 20.8 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein Arm PF00514.18 gi|305663381|ref|YP_003859669.1| - 0.093 12.5 0.1 0.27 11.1 0.1 1.8 2 0 0 2 2 2 0 Armadillo/beta-catenin-like repeat DUF2061 PF09834.4 gi|305663381|ref|YP_003859669.1| - 6.3 7.0 7.2 12 6.1 0.7 3.0 3 0 0 3 3 3 0 Predicted membrane protein (DUF2061) VWA_2 PF13519.1 gi|305663382|ref|YP_003859670.1| - 1.6e-24 86.9 0.0 2.1e-24 86.5 0.0 1.1 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|305663382|ref|YP_003859670.1| - 1.2e-16 60.8 0.0 1.9e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|305663382|ref|YP_003859670.1| - 2.9e-06 26.6 0.3 7.5e-06 25.2 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein vWA-TerF-like PF10138.4 gi|305663382|ref|YP_003859670.1| - 7.6e-06 25.8 0.0 1.4e-05 24.9 0.0 1.5 1 1 0 1 1 1 1 vWA found in TerF C terminus DUF2201 PF09967.4 gi|305663382|ref|YP_003859670.1| - 0.001 19.0 0.0 0.0029 17.6 0.0 1.7 2 0 0 2 2 2 1 VWA-like domain (DUF2201) VWA_3 PF13768.1 gi|305663382|ref|YP_003859670.1| - 0.0075 15.9 0.0 0.015 15.0 0.0 1.5 1 1 0 1 1 1 1 von Willebrand factor type A domain BatA PF07584.6 gi|305663382|ref|YP_003859670.1| - 0.0083 16.2 3.0 0.033 14.3 0.4 2.3 2 0 0 2 2 2 1 Aerotolerance regulator N-terminal Resolvase PF00239.16 gi|305663382|ref|YP_003859670.1| - 0.08 12.8 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Resolvase, N terminal domain VWA_2 PF13519.1 gi|305663383|ref|YP_003859671.1| - 3.1e-14 53.4 0.0 4.5e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|305663383|ref|YP_003859671.1| - 2.4e-10 40.3 0.1 4.1e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|305663383|ref|YP_003859671.1| - 0.00013 21.8 0.0 0.00039 20.3 0.0 1.7 1 1 0 1 1 1 1 vWA found in TerF C terminus Vps5 PF09325.5 gi|305663384|ref|YP_003859672.1| - 0.1 11.8 0.3 0.88 8.7 0.3 2.1 2 0 0 2 2 2 0 Vps5 C terminal like CCSMST1 PF15013.1 gi|305663384|ref|YP_003859672.1| - 1.1 9.1 3.8 4.5 7.2 1.1 2.4 2 0 0 2 2 2 0 CCSMST1 family DUF948 PF06103.6 gi|305663384|ref|YP_003859672.1| - 1.7 8.5 4.5 3.3 7.6 1.5 2.7 2 2 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF3816 PF12822.2 gi|305663385|ref|YP_003859673.1| - 0.0056 16.6 20.9 0.0077 16.1 14.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) ABC_tran PF00005.22 gi|305663386|ref|YP_003859674.1| - 1e-43 148.9 0.0 1.5e-21 77.0 0.0 2.6 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305663386|ref|YP_003859674.1| - 2.4e-14 53.9 23.3 1.6e-06 28.2 4.2 4.6 2 2 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|305663386|ref|YP_003859674.1| - 3.6e-09 35.9 0.2 0.0022 17.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|305663386|ref|YP_003859674.1| - 4.4e-07 30.4 2.0 0.0007 19.9 0.1 2.5 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|305663386|ref|YP_003859674.1| - 7.8e-07 28.6 0.0 0.0065 15.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|305663386|ref|YP_003859674.1| - 8.1e-07 29.1 0.1 0.035 14.0 0.0 2.5 2 1 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|305663386|ref|YP_003859674.1| - 9.3e-07 29.6 1.5 0.048 14.4 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305663386|ref|YP_003859674.1| - 2.8e-05 24.2 0.2 0.57 10.3 0.0 3.1 3 0 0 3 3 3 2 AAA domain Arch_ATPase PF01637.13 gi|305663386|ref|YP_003859674.1| - 5.1e-05 23.0 0.6 0.022 14.4 0.0 2.6 2 1 0 2 2 2 1 Archaeal ATPase AAA_18 PF13238.1 gi|305663386|ref|YP_003859674.1| - 5.4e-05 23.4 0.6 0.19 11.9 0.2 2.7 2 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663386|ref|YP_003859674.1| - 0.0001 21.6 5.2 0.54 9.4 0.1 3.7 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|305663386|ref|YP_003859674.1| - 0.00017 20.8 0.3 0.4 9.8 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|305663386|ref|YP_003859674.1| - 0.00024 20.9 0.2 0.91 9.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|305663386|ref|YP_003859674.1| - 0.00056 18.8 0.0 0.45 9.3 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein NACHT PF05729.7 gi|305663386|ref|YP_003859674.1| - 0.0008 19.0 1.3 0.55 9.8 0.0 2.3 2 0 0 2 2 2 2 NACHT domain APS_kinase PF01583.15 gi|305663386|ref|YP_003859674.1| - 0.0013 18.3 0.1 0.72 9.4 0.0 2.3 2 0 0 2 2 2 1 Adenylylsulphate kinase NB-ARC PF00931.17 gi|305663386|ref|YP_003859674.1| - 0.0021 16.9 0.3 2 7.2 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain MMR_HSR1 PF01926.18 gi|305663386|ref|YP_003859674.1| - 0.0025 17.7 2.0 0.71 9.8 0.1 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase AAA PF00004.24 gi|305663386|ref|YP_003859674.1| - 0.0032 17.6 0.4 3.1 8.0 0.0 3.3 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|305663386|ref|YP_003859674.1| - 0.0038 17.3 0.3 3.5 7.8 0.1 2.7 2 1 0 2 2 2 1 RNA helicase AAA_19 PF13245.1 gi|305663386|ref|YP_003859674.1| - 0.0046 16.6 0.0 4 7.2 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain Mg_chelatase PF01078.16 gi|305663386|ref|YP_003859674.1| - 0.0047 16.1 0.0 0.67 9.0 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|305663386|ref|YP_003859674.1| - 0.0056 16.1 6.2 0.34 10.3 0.2 2.8 3 0 0 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|305663386|ref|YP_003859674.1| - 0.0065 16.3 1.8 0.21 11.3 0.1 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_30 PF13604.1 gi|305663386|ref|YP_003859674.1| - 0.0069 15.9 0.1 1.6 8.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|305663386|ref|YP_003859674.1| - 0.008 15.6 0.0 0.19 11.1 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|305663386|ref|YP_003859674.1| - 0.012 14.9 0.2 0.072 12.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_13 PF13166.1 gi|305663386|ref|YP_003859674.1| - 0.014 13.9 0.9 0.16 10.4 0.1 2.1 2 0 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|305663386|ref|YP_003859674.1| - 0.025 13.2 0.0 4.8 5.7 0.0 2.3 2 0 0 2 2 2 0 G-protein alpha subunit MobB PF03205.9 gi|305663386|ref|YP_003859674.1| - 0.027 14.1 0.9 5.2 6.7 0.1 2.5 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|305663386|ref|YP_003859674.1| - 0.053 13.4 2.7 1.6 8.6 0.0 3.2 3 1 1 4 4 3 0 AAA domain ArgK PF03308.11 gi|305663386|ref|YP_003859674.1| - 0.078 11.7 0.0 2.4 6.8 0.0 2.2 2 0 0 2 2 2 0 ArgK protein PIF1 PF05970.9 gi|305663386|ref|YP_003859674.1| - 0.093 11.6 0.2 0.81 8.5 0.0 2.4 3 0 0 3 3 3 0 PIF1-like helicase SbcCD_C PF13558.1 gi|305663386|ref|YP_003859674.1| - 0.096 12.6 0.0 4.5 7.2 0.0 2.5 2 0 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PEPCK_ATP PF01293.15 gi|305663386|ref|YP_003859674.1| - 0.096 11.1 0.0 11 4.3 0.0 2.2 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase AAA_28 PF13521.1 gi|305663386|ref|YP_003859674.1| - 0.1 12.5 0.4 8.3 6.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|305663386|ref|YP_003859674.1| - 0.11 12.1 1.2 7.1 6.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|305663386|ref|YP_003859674.1| - 0.13 11.3 0.1 9.3 5.2 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin Miro PF08477.8 gi|305663386|ref|YP_003859674.1| - 0.13 12.7 0.4 29 5.1 0.1 2.7 2 0 0 2 2 2 0 Miro-like protein UPF0079 PF02367.12 gi|305663386|ref|YP_003859674.1| - 0.16 11.6 0.7 3.9 7.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 PhoH PF02562.11 gi|305663386|ref|YP_003859674.1| - 0.17 11.1 0.2 0.74 9.0 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein OppC_N PF12911.2 gi|305663387|ref|YP_003859675.1| - 0.84 9.0 6.6 0.53 9.6 2.7 2.1 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C 2TM PF13239.1 gi|305663387|ref|YP_003859675.1| - 1.3 9.1 4.3 2.9 8.0 3.0 1.7 1 0 0 1 1 1 0 2TM domain NTP_transf_2 PF01909.18 gi|305663388|ref|YP_003859676.1| - 1.4e-10 41.3 0.4 4.1e-10 39.8 0.3 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Nuc-transf PF10127.4 gi|305663388|ref|YP_003859676.1| - 0.021 14.2 0.0 0.023 14.0 0.0 1.1 1 0 0 1 1 1 0 Predicted nucleotidyltransferase DNA_pol_B_palm PF14792.1 gi|305663388|ref|YP_003859676.1| - 0.026 14.5 0.1 0.049 13.6 0.1 1.8 1 1 0 1 1 1 0 DNA polymerase beta palm HEPN PF05168.9 gi|305663389|ref|YP_003859677.1| - 1.8e-35 121.3 0.7 2.3e-35 121.0 0.5 1.0 1 0 0 1 1 1 1 HEPN domain TPR_2 PF07719.12 gi|305663389|ref|YP_003859677.1| - 2.4 8.2 5.9 1.3 9.1 0.2 2.9 1 1 1 2 2 2 0 Tetratricopeptide repeat Abhydrolase_5 PF12695.2 gi|305663390|ref|YP_003859678.1| - 3.2e-24 85.3 0.0 4.1e-24 84.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|305663390|ref|YP_003859678.1| - 1.3e-21 77.5 0.0 3.1e-21 76.2 0.0 1.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|305663390|ref|YP_003859678.1| - 2.7e-11 43.4 0.0 1.3e-07 31.4 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|305663390|ref|YP_003859678.1| - 5.2e-10 39.3 0.0 8.1e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Peptidase_S9 PF00326.16 gi|305663390|ref|YP_003859678.1| - 5.8e-10 38.7 0.0 7.5e-10 38.3 0.0 1.1 1 0 0 1 1 1 1 Prolyl oligopeptidase family BAAT_C PF08840.6 gi|305663390|ref|YP_003859678.1| - 1.1e-08 35.1 0.0 1.8e-07 31.0 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_3 PF07859.8 gi|305663390|ref|YP_003859678.1| - 6.3e-08 32.4 0.0 9.6e-08 31.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|305663390|ref|YP_003859678.1| - 5.2e-07 29.1 0.0 0.0061 15.8 0.0 2.5 3 0 0 3 3 3 2 Dienelactone hydrolase family AXE1 PF05448.7 gi|305663390|ref|YP_003859678.1| - 1.6e-06 26.8 0.0 2.3e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) FSH1 PF03959.8 gi|305663390|ref|YP_003859678.1| - 5.8e-06 25.9 0.0 1.1e-05 25.0 0.0 1.4 2 0 0 2 2 1 1 Serine hydrolase (FSH1) DUF2048 PF09752.4 gi|305663390|ref|YP_003859678.1| - 0.00014 20.9 0.0 0.029 13.2 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2048) Abhydrolase_2 PF02230.11 gi|305663390|ref|YP_003859678.1| - 0.00015 21.2 0.1 0.35 10.2 0.0 2.2 1 1 1 2 2 2 2 Phospholipase/Carboxylesterase Peptidase_S15 PF02129.13 gi|305663390|ref|YP_003859678.1| - 0.00019 20.9 0.0 0.023 14.1 0.0 2.1 1 1 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.15 gi|305663390|ref|YP_003859678.1| - 0.0016 17.9 0.0 0.0024 17.3 0.0 1.3 1 0 0 1 1 1 1 Putative esterase DUF2305 PF10230.4 gi|305663390|ref|YP_003859678.1| - 0.002 17.6 0.0 0.0098 15.3 0.0 1.8 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2305) DUF1100 PF06500.6 gi|305663390|ref|YP_003859678.1| - 0.0023 16.5 0.0 0.0029 16.2 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1100) LIP PF03583.9 gi|305663390|ref|YP_003859678.1| - 0.006 15.8 0.0 0.019 14.1 0.0 1.7 2 0 0 2 2 2 1 Secretory lipase DUF2974 PF11187.3 gi|305663390|ref|YP_003859678.1| - 0.0093 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2974) Hydrolase_4 PF12146.3 gi|305663390|ref|YP_003859678.1| - 0.016 15.0 0.0 0.029 14.2 0.0 1.5 1 0 0 1 1 1 0 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|305663390|ref|YP_003859678.1| - 0.026 14.4 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 TAP-like protein DUF900 PF05990.7 gi|305663390|ref|YP_003859678.1| - 0.036 13.3 0.0 0.083 12.2 0.0 1.6 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF900) PGAP1 PF07819.8 gi|305663390|ref|YP_003859678.1| - 0.06 12.9 0.0 0.095 12.2 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein Ser_hydrolase PF06821.8 gi|305663390|ref|YP_003859678.1| - 0.16 11.5 0.0 0.38 10.3 0.0 1.6 1 1 0 1 1 1 0 Serine hydrolase PNP_UDP_1 PF01048.15 gi|305663392|ref|YP_003859680.1| - 1.3e-45 155.2 1.1 1.5e-45 155.0 0.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Cation_efflux PF01545.16 gi|305663393|ref|YP_003859681.1| - 1.6e-33 116.0 5.6 1.8e-33 115.8 3.9 1.0 1 0 0 1 1 1 1 Cation efflux family DNase-RNase PF02577.9 gi|305663393|ref|YP_003859681.1| - 0.0029 16.8 0.0 0.0051 16.0 0.0 1.3 1 0 0 1 1 1 1 Bifunctional nuclease Band_7 PF01145.20 gi|305663393|ref|YP_003859681.1| - 0.096 12.5 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 SPFH domain / Band 7 family Acetyltransf_1 PF00583.19 gi|305663394|ref|YP_003859682.1| - 1.1e-10 41.3 0.0 1.8e-10 40.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|305663394|ref|YP_003859682.1| - 2.7e-06 27.5 0.0 4.8e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|305663394|ref|YP_003859682.1| - 3.5e-06 26.6 0.0 6.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|305663394|ref|YP_003859682.1| - 4.1e-06 26.8 0.1 6.6e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|305663394|ref|YP_003859682.1| - 4.4e-05 23.3 0.0 6.1e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|305663394|ref|YP_003859682.1| - 0.00036 20.7 0.0 0.0005 20.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|305663394|ref|YP_003859682.1| - 0.014 15.3 0.0 0.037 13.9 0.0 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|305663394|ref|YP_003859682.1| - 0.023 14.5 0.0 0.035 13.9 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.2 gi|305663394|ref|YP_003859682.1| - 0.035 12.9 0.3 0.043 12.6 0.2 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_CG PF14542.1 gi|305663394|ref|YP_003859682.1| - 0.043 13.6 0.0 0.082 12.7 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DDE_Tnp_1_2 PF13586.1 gi|305663394|ref|YP_003859682.1| - 0.075 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain TBP PF00352.16 gi|305663395|ref|YP_003859683.1| - 1.5e-68 226.1 0.1 1.5e-34 117.2 0.0 2.1 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|305663395|ref|YP_003859683.1| - 0.00014 21.8 0.0 0.66 10.0 0.0 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) DUF87 PF01935.12 gi|305663396|ref|YP_003859684.1| - 3.8e-37 128.3 0.3 8e-37 127.2 0.1 1.6 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|305663396|ref|YP_003859684.1| - 8.1e-15 55.0 0.0 1.1e-07 31.6 0.0 2.4 1 1 1 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|305663396|ref|YP_003859684.1| - 2.6e-05 22.7 0.0 0.0085 14.4 0.0 2.3 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|305663396|ref|YP_003859684.1| - 0.00031 19.5 0.0 0.00098 17.8 0.0 1.7 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.1 gi|305663396|ref|YP_003859684.1| - 0.03 14.4 0.0 0.11 12.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|305663396|ref|YP_003859684.1| - 0.048 13.1 0.0 0.84 9.0 0.0 2.4 3 0 0 3 3 3 0 FtsK/SpoIIIE family Sigma70_r4 PF04545.11 gi|305663396|ref|YP_003859684.1| - 0.057 12.7 0.5 0.14 11.4 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 AAA_16 PF13191.1 gi|305663396|ref|YP_003859684.1| - 0.069 13.1 0.0 0.15 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|305663396|ref|YP_003859684.1| - 0.17 12.1 0.0 0.32 11.3 0.0 1.4 1 0 0 1 1 1 0 ABC transporter NurA PF09376.5 gi|305663397|ref|YP_003859685.1| - 9.4e-21 74.4 3.7 1.6e-20 73.6 2.6 1.4 1 1 0 1 1 1 1 NurA domain Metallophos PF00149.23 gi|305663398|ref|YP_003859686.1| - 3e-08 33.2 1.0 9.2e-07 28.4 0.7 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|305663398|ref|YP_003859686.1| - 5.2e-08 32.8 0.3 1.1e-07 31.8 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain AAA_26 PF13500.1 gi|305663398|ref|YP_003859686.1| - 0.025 14.2 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain HupF_HypC PF01455.13 gi|305663399|ref|YP_003859687.1| - 7.3e-15 54.7 5.1 8.7e-15 54.4 2.7 1.7 2 0 0 2 2 2 1 HupF/HypC family FdhD-NarQ PF02634.10 gi|305663400|ref|YP_003859688.1| - 1.3e-29 103.3 0.0 2.8e-29 102.2 0.0 1.5 1 1 1 2 2 2 1 FdhD/NarQ family PALP PF00291.20 gi|305663403|ref|YP_003859691.1| - 6.2e-41 140.6 0.0 7.4e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_2 PF13240.1 gi|305663403|ref|YP_003859691.1| - 0.012 15.0 3.4 0.024 14.1 2.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HTH_24 PF13412.1 gi|305663403|ref|YP_003859691.1| - 0.012 14.9 2.0 1.6 8.1 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|305663403|ref|YP_003859691.1| - 0.013 15.2 1.1 0.046 13.4 0.8 2.1 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.1 gi|305663403|ref|YP_003859691.1| - 0.016 15.0 0.9 0.042 13.6 0.7 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix WIYLD PF10440.4 gi|305663403|ref|YP_003859691.1| - 0.02 14.7 0.1 0.043 13.7 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-binding WIYLD domain DZR PF12773.2 gi|305663403|ref|YP_003859691.1| - 0.044 13.6 0.9 0.076 12.8 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon HTH_20 PF12840.2 gi|305663403|ref|YP_003859691.1| - 0.045 13.5 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HypA PF01155.14 gi|305663403|ref|YP_003859691.1| - 0.075 12.7 0.3 0.21 11.3 0.1 1.8 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family FUR PF01475.14 gi|305663403|ref|YP_003859691.1| - 0.089 12.7 1.4 0.27 11.1 0.5 2.0 2 0 0 2 2 2 0 Ferric uptake regulator family B-block_TFIIIC PF04182.7 gi|305663403|ref|YP_003859691.1| - 0.089 12.6 0.1 0.24 11.2 0.1 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC DUF2513 PF10711.4 gi|305663403|ref|YP_003859691.1| - 0.1 12.6 0.2 0.22 11.6 0.1 1.6 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) zf-C4_Topoisom PF01396.14 gi|305663403|ref|YP_003859691.1| - 0.13 11.8 2.8 0.44 10.0 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.7 gi|305663403|ref|YP_003859691.1| - 0.21 11.3 2.7 1.4 8.6 0.1 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.1 gi|305663403|ref|YP_003859691.1| - 2.1 8.0 4.9 0.82 9.4 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305663403|ref|YP_003859691.1| - 2.2 7.9 4.8 0.83 9.2 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CPSase_L_D2 PF02786.12 gi|305663405|ref|YP_003859693.1| - 1.1e-73 246.9 0.3 1.5e-73 246.5 0.2 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|305663405|ref|YP_003859693.1| - 1.4e-41 141.0 0.0 8.9e-41 138.4 0.0 2.2 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|305663405|ref|YP_003859693.1| - 2.7e-36 123.7 0.0 4.9e-36 122.9 0.0 1.4 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain ATP-grasp_4 PF13535.1 gi|305663405|ref|YP_003859693.1| - 2.4e-20 73.0 0.0 3.8e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|305663405|ref|YP_003859693.1| - 1.1e-18 67.1 0.0 2.6e-18 65.8 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|305663405|ref|YP_003859693.1| - 9.5e-11 41.4 0.0 1.7e-10 40.6 0.0 1.4 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|305663405|ref|YP_003859693.1| - 2.1e-08 33.7 0.1 8.2e-08 31.7 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.6 gi|305663405|ref|YP_003859693.1| - 1.1e-06 28.3 0.3 4.7e-06 26.2 0.2 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305663405|ref|YP_003859693.1| - 0.00023 21.0 0.2 0.00045 20.1 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|305663405|ref|YP_003859693.1| - 0.015 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GAF PF01590.21 gi|305663405|ref|YP_003859693.1| - 0.056 13.5 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 GAF domain DeoC PF01791.4 gi|305663405|ref|YP_003859693.1| - 0.15 11.3 0.0 5.9 6.1 0.0 2.3 2 0 0 2 2 2 0 DeoC/LacD family aldolase UPF0047 PF01894.12 gi|305663406|ref|YP_003859694.1| - 4.5e-15 55.5 0.0 6e-08 32.5 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0047 UPF0047 PF01894.12 gi|305663407|ref|YP_003859695.1| - 4.2e-10 39.4 0.0 5.1e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HEPN PF05168.9 gi|305663408|ref|YP_003859696.1| - 1.2e-36 125.2 0.0 1.3e-36 125.0 0.0 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.18 gi|305663409|ref|YP_003859697.1| - 5.2e-12 45.9 0.4 6e-12 45.7 0.2 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|305663409|ref|YP_003859697.1| - 0.0049 16.4 0.0 0.007 15.9 0.0 1.2 1 0 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DNA_pol_B_palm PF14792.1 gi|305663409|ref|YP_003859697.1| - 0.048 13.7 0.0 0.069 13.2 0.0 1.4 1 1 0 1 1 1 0 DNA polymerase beta palm AlaDh_PNT_C PF01262.16 gi|305663410|ref|YP_003859698.1| - 6.9e-46 155.8 0.8 1e-45 155.3 0.5 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain AlaDh_PNT_N PF05222.10 gi|305663410|ref|YP_003859698.1| - 9.8e-34 116.2 0.0 2.2e-33 115.1 0.0 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, N-terminal domain 2-Hacid_dh_C PF02826.14 gi|305663410|ref|YP_003859698.1| - 4.5e-08 32.4 0.0 0.0058 15.8 0.0 2.4 2 0 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|305663410|ref|YP_003859698.1| - 9.2e-06 26.2 0.0 6.2e-05 23.5 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain NAS PF03059.11 gi|305663410|ref|YP_003859698.1| - 0.00083 18.5 0.0 0.0083 15.3 0.0 2.1 1 1 0 1 1 1 1 Nicotianamine synthase protein ADH_zinc_N PF00107.21 gi|305663410|ref|YP_003859698.1| - 0.0016 17.9 1.6 0.016 14.7 0.3 3.0 2 1 0 2 2 2 1 Zinc-binding dehydrogenase Shikimate_DH PF01488.15 gi|305663410|ref|YP_003859698.1| - 0.0019 18.3 1.0 0.24 11.4 0.0 2.5 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GIDA PF01134.17 gi|305663410|ref|YP_003859698.1| - 0.03 13.1 0.4 0.047 12.5 0.3 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A Methyltransf_23 PF13489.1 gi|305663410|ref|YP_003859698.1| - 0.078 12.6 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Pyr_redox_2 PF07992.9 gi|305663410|ref|YP_003859698.1| - 0.12 12.2 1.8 0.3 10.9 1.4 1.8 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|305663410|ref|YP_003859698.1| - 0.17 11.9 1.7 0.46 10.5 0.5 2.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain HAD PF12710.2 gi|305663410|ref|YP_003859698.1| - 0.23 11.6 1.5 35 4.4 0.0 3.0 1 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase FAD_binding_2 PF00890.19 gi|305663410|ref|YP_003859698.1| - 0.36 9.6 1.8 0.54 9.0 1.3 1.2 1 0 0 1 1 1 0 FAD binding domain DUF3814 PF12769.2 gi|305663411|ref|YP_003859699.1| - 8.8e-33 112.3 10.8 1e-32 112.1 7.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3814) Coiled-coil_56 PF09813.4 gi|305663411|ref|YP_003859699.1| - 0.12 12.3 0.1 0.17 11.8 0.1 1.2 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 56 DUF485 PF04341.7 gi|305663411|ref|YP_003859699.1| - 6.7 6.5 7.8 28 4.4 5.4 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF485 PNTB PF02233.11 gi|305663412|ref|YP_003859700.1| - 1.4e-163 544.9 28.4 1.6e-163 544.7 19.7 1.0 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit TPP_enzyme_M PF00205.17 gi|305663412|ref|YP_003859700.1| - 3e-05 23.7 0.1 0.00012 21.8 0.1 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain PdxA PF04166.7 gi|305663413|ref|YP_003859701.1| - 4.6e-73 246.0 0.0 5.9e-73 245.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA DUF2115 PF09888.4 gi|305663413|ref|YP_003859701.1| - 0.098 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) DEAD_2 PF06733.10 gi|305663414|ref|YP_003859702.1| - 3.1e-22 78.7 0.0 5e-22 78.1 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 Helicase_C_2 PF13307.1 gi|305663414|ref|YP_003859702.1| - 1.7e-20 73.6 0.0 2.9e-20 72.8 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD PF00270.24 gi|305663414|ref|YP_003859702.1| - 9e-07 28.5 0.1 0.01 15.3 0.0 3.0 4 0 0 4 4 4 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|305663414|ref|YP_003859702.1| - 2.9e-06 27.2 0.0 0.00012 21.9 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|305663414|ref|YP_003859702.1| - 0.0021 17.7 0.0 0.0058 16.3 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain DUF3215 PF11503.3 gi|305663414|ref|YP_003859702.1| - 0.04 13.5 0.1 0.22 11.1 0.0 2.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3215) PhoH PF02562.11 gi|305663414|ref|YP_003859702.1| - 0.073 12.2 0.0 0.18 11.0 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein DUF211 PF02680.9 gi|305663414|ref|YP_003859702.1| - 0.2 11.4 2.1 0.32 10.8 0.3 2.2 2 0 0 2 2 2 0 Uncharacterized ArCR, COG1888 AAA_22 PF13401.1 gi|305663414|ref|YP_003859702.1| - 0.36 10.9 2.6 10 6.2 0.0 3.0 4 0 0 4 4 4 0 AAA domain MFS_1 PF07690.11 gi|305663415|ref|YP_003859703.1| - 1.7e-16 59.8 33.7 1.9e-16 59.7 23.4 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily MFS_1 PF07690.11 gi|305663417|ref|YP_003859705.1| - 1e-05 24.4 1.9 1.1e-05 24.3 1.3 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily UPF0126 PF03458.8 gi|305663417|ref|YP_003859705.1| - 0.00069 19.1 0.3 0.0011 18.5 0.2 1.3 1 0 0 1 1 1 1 UPF0126 domain PUCC PF03209.10 gi|305663417|ref|YP_003859705.1| - 0.051 12.2 0.3 0.059 12.0 0.2 1.1 1 0 0 1 1 1 0 PUCC protein Lysine_decarbox PF03641.9 gi|305663418|ref|YP_003859706.1| - 5.4e-05 23.0 0.0 8.1e-05 22.4 0.0 1.5 1 1 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|305663418|ref|YP_003859706.1| - 0.014 14.2 0.0 0.044 12.6 0.0 1.7 1 1 1 2 2 2 0 DNA recombination-mediator protein A Nuc_deoxyrib_tr PF05014.10 gi|305663418|ref|YP_003859706.1| - 0.018 14.9 0.0 0.03 14.2 0.0 1.4 1 1 0 1 1 1 0 Nucleoside 2-deoxyribosyltransferase KaiC PF06745.8 gi|305663419|ref|YP_003859707.1| - 4.2e-86 287.7 0.0 4.8e-86 287.5 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|305663419|ref|YP_003859707.1| - 3.1e-10 39.7 0.0 4.4e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|305663419|ref|YP_003859707.1| - 1.3e-07 30.3 0.1 3.2e-07 29.0 0.0 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|305663419|ref|YP_003859707.1| - 0.003 17.2 0.4 0.0084 15.8 0.3 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF2075 PF09848.4 gi|305663419|ref|YP_003859707.1| - 0.01 14.8 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) MEDS PF14417.1 gi|305663419|ref|YP_003859707.1| - 0.012 14.6 0.0 0.056 12.4 0.0 1.9 1 1 1 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain T2SE PF00437.15 gi|305663419|ref|YP_003859707.1| - 0.016 14.0 0.0 0.027 13.3 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_17 PF13207.1 gi|305663419|ref|YP_003859707.1| - 0.032 15.0 0.4 0.19 12.5 0.1 2.3 2 1 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|305663419|ref|YP_003859707.1| - 0.034 13.2 0.1 1.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_28 PF13521.1 gi|305663419|ref|YP_003859707.1| - 0.045 13.7 0.0 0.18 11.7 0.0 2.1 3 0 0 3 3 3 0 AAA domain AAA_22 PF13401.1 gi|305663419|ref|YP_003859707.1| - 0.049 13.7 0.0 0.09 12.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305663419|ref|YP_003859707.1| - 0.079 12.8 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|305663419|ref|YP_003859707.1| - 0.082 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DnaB_C PF03796.10 gi|305663419|ref|YP_003859707.1| - 0.091 11.6 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain Arch_ATPase PF01637.13 gi|305663419|ref|YP_003859707.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase Rad51 PF08423.6 gi|305663419|ref|YP_003859707.1| - 0.14 11.0 0.1 0.39 9.5 0.0 1.7 2 0 0 2 2 2 0 Rad51 HTH_38 PF13936.1 gi|305663420|ref|YP_003859708.1| - 0.00029 20.3 0.0 0.00083 18.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_40 PF14493.1 gi|305663420|ref|YP_003859708.1| - 0.0017 18.4 0.7 0.0096 16.1 0.5 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|305663420|ref|YP_003859708.1| - 0.0035 16.9 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Herpes_UL6 PF01763.11 gi|305663420|ref|YP_003859708.1| - 0.004 15.4 0.6 0.0047 15.1 0.4 1.1 1 0 0 1 1 1 1 Herpesvirus UL6 like HTH_20 PF12840.2 gi|305663420|ref|YP_003859708.1| - 0.0048 16.6 0.0 0.013 15.2 0.0 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain UPF0242 PF06785.6 gi|305663420|ref|YP_003859708.1| - 0.0083 14.8 0.8 0.011 14.4 0.6 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) GerE PF00196.14 gi|305663420|ref|YP_003859708.1| - 0.01 15.1 0.0 0.21 10.8 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Cep57_CLD_2 PF14197.1 gi|305663420|ref|YP_003859708.1| - 0.014 15.2 0.3 0.044 13.7 0.2 1.8 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 COG2 PF06148.6 gi|305663420|ref|YP_003859708.1| - 0.015 15.1 1.8 0.045 13.6 1.1 1.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 HTH_11 PF08279.7 gi|305663420|ref|YP_003859708.1| - 0.018 14.6 0.0 0.067 12.8 0.0 2.0 2 0 0 2 2 1 0 HTH domain Leu_zip PF15294.1 gi|305663420|ref|YP_003859708.1| - 0.018 14.1 3.5 0.029 13.5 2.4 1.5 1 1 0 1 1 1 0 Leucine zipper DivIVA PF05103.8 gi|305663420|ref|YP_003859708.1| - 0.023 14.7 2.2 0.066 13.2 0.7 2.2 2 1 0 2 2 2 0 DivIVA protein Spc7 PF08317.6 gi|305663420|ref|YP_003859708.1| - 0.027 13.1 1.4 0.032 12.8 1.0 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Mod_r PF07200.8 gi|305663420|ref|YP_003859708.1| - 0.028 14.3 1.5 0.041 13.8 0.6 1.6 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein TSC22 PF01166.13 gi|305663420|ref|YP_003859708.1| - 0.03 14.2 0.6 0.081 12.9 0.4 1.9 1 0 0 1 1 1 0 TSC-22/dip/bun family Sigma70_r4 PF04545.11 gi|305663420|ref|YP_003859708.1| - 0.037 13.3 0.0 0.092 12.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|305663420|ref|YP_003859708.1| - 0.038 13.4 0.0 0.089 12.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 bZIP_1 PF00170.16 gi|305663420|ref|YP_003859708.1| - 0.042 13.7 1.7 0.11 12.4 1.2 1.8 1 0 0 1 1 1 0 bZIP transcription factor NYD-SP28_assoc PF14775.1 gi|305663420|ref|YP_003859708.1| - 0.048 13.3 1.2 0.12 12.1 0.9 1.6 1 0 0 1 1 1 0 Sperm tail C-terminal domain HTH_5 PF01022.15 gi|305663420|ref|YP_003859708.1| - 0.05 13.2 0.0 0.37 10.5 0.0 2.5 1 1 1 2 2 2 0 Bacterial regulatory protein, arsR family PAZ_siRNAbind PF12212.3 gi|305663420|ref|YP_003859708.1| - 0.054 13.1 0.4 0.15 11.7 0.3 1.7 1 0 0 1 1 1 0 Piwi/Argonaute/Zwille siRNA-binding domain Sec34 PF04136.10 gi|305663420|ref|YP_003859708.1| - 0.11 12.1 1.7 0.33 10.6 0.7 1.9 1 1 1 2 2 2 0 Sec34-like family Terminase_5 PF06056.7 gi|305663420|ref|YP_003859708.1| - 0.13 11.7 0.0 0.25 10.9 0.0 1.4 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) Phage_terminase PF10668.4 gi|305663420|ref|YP_003859708.1| - 0.14 11.9 0.0 0.33 10.7 0.0 1.7 1 0 0 1 1 1 0 Phage terminase small subunit DUF972 PF06156.8 gi|305663420|ref|YP_003859708.1| - 0.2 12.0 1.8 0.37 11.1 0.7 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF972) FlaC_arch PF05377.6 gi|305663420|ref|YP_003859708.1| - 0.27 11.1 7.8 34 4.4 5.0 3.2 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF948 PF06103.6 gi|305663420|ref|YP_003859708.1| - 1.4 8.8 7.1 0.32 10.8 0.9 2.4 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) HALZ PF02183.13 gi|305663420|ref|YP_003859708.1| - 1.7 8.4 5.8 0.32 10.7 1.1 1.9 2 0 0 2 2 2 0 Homeobox associated leucine zipper DUF61 PF01886.11 gi|305663421|ref|YP_003859709.1| - 7.3e-30 103.5 0.8 8.2e-30 103.3 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF61 DUF3807 PF12720.2 gi|305663421|ref|YP_003859709.1| - 0.028 14.5 0.1 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) Peptidase_M41 PF01434.13 gi|305663422|ref|YP_003859710.1| - 1.4e-06 28.0 10.7 0.00013 21.5 2.0 2.0 1 1 1 2 2 2 2 Peptidase family M41 V-ATPase_G PF03179.10 gi|305663422|ref|YP_003859710.1| - 3.6e-05 23.9 20.5 0.00013 22.2 14.2 1.7 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|305663422|ref|YP_003859710.1| - 5e-05 23.1 20.8 0.016 15.0 6.3 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) HrpE PF06188.7 gi|305663422|ref|YP_003859710.1| - 5.2e-05 23.0 9.8 0.0024 17.6 1.4 2.1 1 1 1 2 2 2 2 HrpE/YscL/FliH and V-type ATPase subunit E DivIVA PF05103.8 gi|305663422|ref|YP_003859710.1| - 7e-05 22.8 14.6 0.019 15.0 3.3 2.1 1 1 1 2 2 2 2 DivIVA protein DUF3552 PF12072.3 gi|305663422|ref|YP_003859710.1| - 0.0008 18.6 22.3 0.0044 16.2 7.6 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF3552) FIVAR PF07554.8 gi|305663422|ref|YP_003859710.1| - 0.0013 18.9 1.0 1.2 9.4 0.2 3.2 2 1 0 2 2 2 1 Uncharacterised Sugar-binding Domain ISG65-75 PF11727.3 gi|305663422|ref|YP_003859710.1| - 0.0039 16.3 8.3 0.0042 16.1 5.8 1.1 1 0 0 1 1 1 1 Invariant surface glycoprotein GBP_C PF02841.9 gi|305663422|ref|YP_003859710.1| - 0.0054 15.9 3.7 0.0076 15.4 2.5 1.3 1 1 0 1 1 1 1 Guanylate-binding protein, C-terminal domain ARGLU PF15346.1 gi|305663422|ref|YP_003859710.1| - 0.012 15.4 18.9 0.018 14.8 13.1 1.3 1 0 0 1 1 1 0 Arginine and glutamate-rich 1 DUF883 PF05957.8 gi|305663422|ref|YP_003859710.1| - 0.055 13.8 10.6 2 8.8 2.7 2.2 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Apolipoprotein PF01442.13 gi|305663422|ref|YP_003859710.1| - 0.073 12.5 8.0 0.16 11.4 5.5 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain BMFP PF04380.8 gi|305663422|ref|YP_003859710.1| - 0.081 13.0 6.5 4.2 7.5 0.9 2.8 1 1 1 2 2 2 0 Membrane fusogenic activity Con-6 PF10346.4 gi|305663422|ref|YP_003859710.1| - 0.082 12.3 3.7 4.3 6.8 0.1 3.1 2 1 1 3 3 3 0 Conidiation protein 6 TryThrA_C PF12319.3 gi|305663422|ref|YP_003859710.1| - 0.092 11.9 1.7 0.38 9.8 0.2 1.9 1 1 1 2 2 2 0 Tryptophan-Threonine-rich plasmodium antigen C terminal Dynamin_M PF01031.15 gi|305663422|ref|YP_003859710.1| - 0.13 11.0 3.8 0.27 9.9 2.6 1.6 1 1 0 1 1 1 0 Dynamin central region DUF370 PF04025.7 gi|305663422|ref|YP_003859710.1| - 0.15 12.1 6.2 2.6 8.1 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF370) FUN14 PF04930.10 gi|305663422|ref|YP_003859710.1| - 0.17 12.1 0.5 1.4 9.2 0.3 2.0 1 1 0 1 1 1 0 FUN14 family Nup54 PF13874.1 gi|305663422|ref|YP_003859710.1| - 0.19 11.4 7.3 0.099 12.3 1.3 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF445 PF04286.7 gi|305663422|ref|YP_003859710.1| - 0.25 10.8 6.6 0.29 10.6 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF445) Myb_CC_LHEQLE PF14379.1 gi|305663422|ref|YP_003859710.1| - 0.26 10.9 5.8 0.085 12.4 1.0 2.3 2 1 0 2 2 2 0 MYB-CC type transfactor, LHEQLE motif APG17 PF04108.7 gi|305663422|ref|YP_003859710.1| - 0.28 9.9 5.9 0.76 8.5 2.8 1.8 1 1 1 2 2 2 0 Autophagy protein Apg17 YfdX PF10938.3 gi|305663422|ref|YP_003859710.1| - 0.28 10.8 6.4 2.2 7.8 0.3 2.1 1 1 0 2 2 2 0 YfdX protein YtxH PF12732.2 gi|305663422|ref|YP_003859710.1| - 0.31 11.4 9.8 10 6.5 6.8 2.1 1 1 0 1 1 1 0 YtxH-like protein Peptidase_S46 PF10459.4 gi|305663422|ref|YP_003859710.1| - 0.42 8.9 3.1 0.46 8.8 2.1 1.0 1 0 0 1 1 1 0 Peptidase S46 vATP-synt_E PF01991.13 gi|305663422|ref|YP_003859710.1| - 0.48 9.6 24.4 1.1 8.5 5.8 2.1 1 1 1 2 2 2 0 ATP synthase (E/31 kDa) subunit FadA PF09403.5 gi|305663422|ref|YP_003859710.1| - 0.5 10.3 10.4 0.57 10.1 7.2 1.1 1 0 0 1 1 1 0 Adhesion protein FadA Adenylsucc_synt PF00709.16 gi|305663422|ref|YP_003859710.1| - 0.53 8.8 3.1 0.61 8.6 2.1 1.1 1 0 0 1 1 1 0 Adenylosuccinate synthetase Cauli_AT PF03233.8 gi|305663422|ref|YP_003859710.1| - 0.6 9.8 7.6 0.3 10.7 2.2 1.7 1 1 1 2 2 2 0 Aphid transmission protein Phasin PF05597.6 gi|305663422|ref|YP_003859710.1| - 0.67 9.7 8.6 1.3 8.8 6.0 1.5 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) PIN_2 PF10130.4 gi|305663422|ref|YP_003859710.1| - 0.69 9.9 6.6 1.2 9.1 4.6 1.5 1 1 0 1 1 1 0 PIN domain ApoLp-III PF07464.6 gi|305663422|ref|YP_003859710.1| - 0.74 9.8 9.8 0.83 9.6 2.1 1.7 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) YkyA PF10368.4 gi|305663422|ref|YP_003859710.1| - 0.81 8.9 15.1 4.3 6.6 10.5 1.8 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein DUF3391 PF11871.3 gi|305663422|ref|YP_003859710.1| - 0.87 9.7 7.9 5.5 7.2 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Sec5 PF15469.1 gi|305663422|ref|YP_003859710.1| - 0.89 9.2 5.9 8.2 6.1 0.8 2.1 1 1 1 2 2 2 0 Exocyst complex component Sec5 Activator-TraM PF11657.3 gi|305663422|ref|YP_003859710.1| - 1 8.8 8.8 2.3 7.7 6.1 1.6 1 1 0 1 1 1 0 Transcriptional activator TraM KfrA_N PF11740.3 gi|305663422|ref|YP_003859710.1| - 1 9.8 10.2 1.7 9.0 1.3 2.1 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term V_ATPase_I PF01496.14 gi|305663422|ref|YP_003859710.1| - 1.4 6.7 6.7 1.6 6.5 4.6 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2524 PF10732.4 gi|305663422|ref|YP_003859710.1| - 1.4 9.1 5.3 1.9 8.6 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2524) DUF2317 PF10079.4 gi|305663422|ref|YP_003859710.1| - 1.4 7.4 6.5 1.7 7.1 4.5 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) DUF2031 PF09592.5 gi|305663422|ref|YP_003859710.1| - 1.4 7.9 9.6 2.5 7.2 1.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2031) LXG PF04740.7 gi|305663422|ref|YP_003859710.1| - 1.5 8.5 7.0 2.9 7.6 4.8 1.5 1 1 0 1 1 1 0 LXG domain of WXG superfamily DUF1778 PF08681.6 gi|305663422|ref|YP_003859710.1| - 1.9 8.3 7.1 29 4.5 1.6 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1778) TcdA_TcdB PF12919.2 gi|305663422|ref|YP_003859710.1| - 2 6.7 5.5 2.7 6.3 3.8 1.3 1 1 0 1 1 1 0 TcdA/TcdB catalytic glycosyltransferase domain Phage_min_cap2 PF06152.6 gi|305663422|ref|YP_003859710.1| - 2 7.2 5.5 3.6 6.4 3.8 1.3 1 1 0 1 1 1 0 Phage minor capsid protein 2 DUF1910 PF08928.5 gi|305663422|ref|YP_003859710.1| - 2.1 8.4 10.2 0.46 10.5 2.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) DUF4230 PF14014.1 gi|305663422|ref|YP_003859710.1| - 2.1 8.2 11.3 4.6 7.0 1.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) RNA_pol_Rpb1_4 PF05000.12 gi|305663422|ref|YP_003859710.1| - 2.2 8.0 4.5 2.1 8.1 0.5 2.0 1 1 1 2 2 2 0 RNA polymerase Rpb1, domain 4 OmpH PF03938.9 gi|305663422|ref|YP_003859710.1| - 2.3 8.1 9.1 2.8 7.8 6.3 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) AF0941-like PF14591.1 gi|305663422|ref|YP_003859710.1| - 2.5 8.1 14.2 6.8 6.7 9.8 1.7 1 1 0 1 1 1 0 AF0941-like DUF3359 PF11839.3 gi|305663422|ref|YP_003859710.1| - 2.6 8.4 9.8 8.8 6.7 2.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3359) HK97-gp10_like PF04883.7 gi|305663422|ref|YP_003859710.1| - 3 8.8 9.5 12 6.9 1.7 2.6 1 1 1 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DUF724 PF05266.9 gi|305663422|ref|YP_003859710.1| - 3 7.4 11.9 3.5 7.1 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) EMP24_GP25L PF01105.19 gi|305663422|ref|YP_003859710.1| - 3.2 7.4 5.4 2.1 8.0 2.4 1.6 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD DUF2203 PF09969.4 gi|305663422|ref|YP_003859710.1| - 3.4 7.8 7.7 5.8 7.1 5.3 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) V-SNARE PF05008.10 gi|305663422|ref|YP_003859710.1| - 3.6 7.8 14.3 12 6.1 3.0 2.9 1 1 2 3 3 3 0 Vesicle transport v-SNARE protein N-terminus HisKA_3 PF07730.8 gi|305663422|ref|YP_003859710.1| - 3.7 7.9 7.0 16 5.9 0.5 2.3 1 1 1 2 2 2 0 Histidine kinase Pox_A_type_inc PF04508.7 gi|305663422|ref|YP_003859710.1| - 3.8 7.5 17.6 2.2 8.3 0.1 4.0 4 0 0 4 4 3 0 Viral A-type inclusion protein repeat Peptidase_M3_N PF08439.5 gi|305663422|ref|YP_003859710.1| - 3.9 7.5 8.9 5 7.2 4.8 2.1 1 1 1 2 2 2 0 Oligopeptidase F DNA_gyraseB PF00204.20 gi|305663422|ref|YP_003859710.1| - 4.2 6.5 9.4 3.8 6.6 1.0 2.0 1 1 1 2 2 2 0 DNA gyrase B HAUS6_N PF14661.1 gi|305663422|ref|YP_003859710.1| - 4.2 6.6 6.4 5.2 6.3 4.4 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus DUF29 PF01724.11 gi|305663422|ref|YP_003859710.1| - 4.4 7.1 9.9 5.6 6.8 6.9 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF29 Syntaxin PF00804.20 gi|305663422|ref|YP_003859710.1| - 5.3 7.2 10.6 79 3.5 7.3 2.1 1 1 0 1 1 1 0 Syntaxin Rotamase_3 PF13616.1 gi|305663422|ref|YP_003859710.1| - 7.3 6.8 9.6 3.8 7.7 1.5 2.1 1 1 1 2 2 2 0 PPIC-type PPIASE domain Toxin_43 PF15604.1 gi|305663422|ref|YP_003859710.1| - 7.7 6.5 8.8 11 5.9 4.3 1.9 1 1 1 2 2 2 0 Putative toxin 43 Translin PF01997.11 gi|305663422|ref|YP_003859710.1| - 8.1 5.9 11.0 11 5.5 2.2 2.0 1 1 1 2 2 2 0 Translin family DUF4259 PF14078.1 gi|305663422|ref|YP_003859710.1| - 8.5 6.8 9.6 19 5.7 2.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4259) Mitofilin PF09731.4 gi|305663422|ref|YP_003859710.1| - 9.3 4.7 15.0 10 4.6 10.4 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Spore_II_R PF09551.5 gi|305663422|ref|YP_003859710.1| - 9.7 6.2 8.9 4.6 7.2 1.8 2.0 1 1 1 2 2 2 0 Stage II sporulation protein R (spore_II_R) V_ATPase_I PF01496.14 gi|305663423|ref|YP_003859711.1| - 1.1e-36 126.0 29.2 2.1e-18 65.5 10.0 4.0 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family Lge1 PF11488.3 gi|305663423|ref|YP_003859711.1| - 0.011 15.8 1.1 0.023 14.9 0.2 1.9 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 NPV_P10 PF05531.7 gi|305663423|ref|YP_003859711.1| - 0.019 15.2 1.2 0.019 15.2 0.8 2.5 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein Prefoldin_2 PF01920.15 gi|305663423|ref|YP_003859711.1| - 0.038 13.7 1.0 0.21 11.3 0.0 2.3 2 0 0 2 2 2 0 Prefoldin subunit CortBP2 PF09727.4 gi|305663423|ref|YP_003859711.1| - 0.15 11.5 3.6 0.14 11.6 0.4 2.0 2 0 0 2 2 2 0 Cortactin-binding protein-2 DASH_Duo1 PF08651.5 gi|305663423|ref|YP_003859711.1| - 0.25 10.9 2.7 0.34 10.5 0.7 2.1 2 0 0 2 2 2 0 DASH complex subunit Duo1 ATP-synt_C PF00137.16 gi|305663424|ref|YP_003859712.1| - 1.2e-16 60.3 23.5 1.1e-09 38.0 4.1 2.1 2 0 0 2 2 2 2 ATP synthase subunit C vATP-synt_E PF01991.13 gi|305663425|ref|YP_003859713.1| - 5.6e-21 74.7 14.1 6.9e-21 74.4 9.8 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|305663425|ref|YP_003859713.1| - 0.00055 19.7 6.5 0.00085 19.1 4.5 1.3 1 0 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E ATP-synt_B PF00430.13 gi|305663425|ref|YP_003859713.1| - 0.0054 16.5 16.8 0.024 14.4 11.1 2.1 1 1 1 2 2 2 2 ATP synthase B/B' CF(0) DivIVA PF05103.8 gi|305663425|ref|YP_003859713.1| - 0.025 14.6 5.0 0.025 14.6 3.5 2.3 1 1 0 2 2 2 0 DivIVA protein DUF3552 PF12072.3 gi|305663425|ref|YP_003859713.1| - 0.052 12.7 15.9 0.24 10.5 5.2 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) FliH PF02108.11 gi|305663425|ref|YP_003859713.1| - 0.059 13.2 7.3 0.041 13.7 0.5 2.4 1 1 1 2 2 2 0 Flagellar assembly protein FliH S-AdoMet_synt_N PF00438.15 gi|305663425|ref|YP_003859713.1| - 0.079 13.1 0.5 0.17 12.1 0.4 1.5 1 0 0 1 1 1 0 S-adenosylmethionine synthetase, N-terminal domain Desmo_N PF06771.6 gi|305663425|ref|YP_003859713.1| - 0.11 12.4 1.1 7.1 6.6 0.1 2.4 2 0 0 2 2 2 0 Viral Desmoplakin N-terminus Phage_Gp23 PF10669.4 gi|305663425|ref|YP_003859713.1| - 0.52 10.4 4.7 0.91 9.6 3.3 1.4 1 0 0 1 1 1 0 Protein gp23 (Bacteriophage A118) Sec2p PF06428.6 gi|305663425|ref|YP_003859713.1| - 1 9.2 7.8 1.5 8.6 5.2 1.6 1 1 0 1 1 1 0 GDP/GTP exchange factor Sec2p DUF4230 PF14014.1 gi|305663425|ref|YP_003859713.1| - 3.7 7.3 7.0 5.1 6.9 3.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF4230) Pox_A_type_inc PF04508.7 gi|305663425|ref|YP_003859713.1| - 4.4 7.3 7.8 2.9 7.8 2.1 3.3 3 0 0 3 3 3 0 Viral A-type inclusion protein repeat V-ATPase_G PF03179.10 gi|305663425|ref|YP_003859713.1| - 8.2 6.7 18.7 0.72 10.1 4.1 2.9 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit Oxidored_q1_C PF01010.14 gi|305663426|ref|YP_003859714.1| - 0.0012 18.4 0.7 0.0028 17.1 0.5 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus ATP-synt_F PF01990.12 gi|305663427|ref|YP_003859715.1| - 1.1e-09 38.5 0.1 1.2e-09 38.4 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|305663428|ref|YP_003859716.1| - 4.6e-90 300.8 0.0 6.9e-90 300.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|305663428|ref|YP_003859716.1| - 7e-18 65.1 0.1 1.3e-17 64.2 0.0 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|305663428|ref|YP_003859716.1| - 1.8e-11 44.0 4.7 4.8e-11 42.7 2.8 2.1 1 1 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|305663428|ref|YP_003859716.1| - 0.014 15.3 0.5 5.5 7.1 0.1 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF2085 PF09858.4 gi|305663428|ref|YP_003859716.1| - 0.066 13.3 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Predicted membrane protein (DUF2085) ATP-synt_ab PF00006.20 gi|305663429|ref|YP_003859717.1| - 1.7e-58 197.6 0.0 2.3e-58 197.2 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|305663429|ref|YP_003859717.1| - 1e-13 51.7 0.2 1.7e-13 51.0 0.1 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|305663429|ref|YP_003859717.1| - 5e-06 26.6 1.1 1.1e-05 25.4 0.7 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|305663429|ref|YP_003859717.1| - 2.2e-05 24.2 0.8 6.2e-05 22.8 0.6 1.8 1 0 0 1 1 1 1 HAS barrel domain ATP-synt_D PF01813.12 gi|305663430|ref|YP_003859718.1| - 7.1e-33 113.8 10.5 9.6e-33 113.3 7.3 1.2 1 0 0 1 1 1 1 ATP synthase subunit D DUF1886 PF09171.5 gi|305663431|ref|YP_003859719.1| - 0.013 14.5 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1886) ADH_N PF08240.7 gi|305663432|ref|YP_003859720.1| - 1.7e-28 98.5 4.1 2.5e-28 97.9 2.8 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|305663432|ref|YP_003859720.1| - 1.3e-12 47.4 0.0 3.3e-12 46.0 0.0 1.6 1 1 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|305663432|ref|YP_003859720.1| - 0.00027 21.8 0.0 0.00047 21.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase DDE_Tnp_1_2 PF13586.1 gi|305663432|ref|YP_003859720.1| - 0.039 14.1 0.0 0.092 12.9 0.0 1.6 1 0 0 1 1 1 0 Transposase DDE domain MTS PF05175.9 gi|305663432|ref|YP_003859720.1| - 0.079 12.3 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Thg1 PF04446.7 gi|305663433|ref|YP_003859721.1| - 6.1e-23 80.9 0.2 1.6e-22 79.5 0.1 1.7 2 0 0 2 2 2 1 tRNAHis guanylyltransferase DUF2365 PF10157.4 gi|305663433|ref|YP_003859721.1| - 0.025 14.4 0.0 0.52 10.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2365) Metallophos_2 PF12850.2 gi|305663434|ref|YP_003859722.1| - 4.6e-08 33.0 1.4 1e-07 31.9 1.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305663434|ref|YP_003859722.1| - 0.0038 16.6 0.1 0.0057 16.0 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase V_ATPase_I PF01496.14 gi|305663436|ref|YP_003859724.1| - 1.7 6.3 9.2 2 6.1 6.4 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family ABC_tran PF00005.22 gi|305663437|ref|YP_003859725.1| - 3.9e-26 91.9 0.0 7e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663437|ref|YP_003859725.1| - 6e-14 52.6 1.2 1.5e-07 31.7 0.0 3.1 1 1 2 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|305663437|ref|YP_003859725.1| - 4.7e-06 26.0 0.8 3.2e-05 23.3 0.3 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF87 PF01935.12 gi|305663437|ref|YP_003859725.1| - 0.00056 19.7 1.7 0.22 11.2 0.3 2.7 2 1 0 2 2 2 2 Domain of unknown function DUF87 AAA_23 PF13476.1 gi|305663437|ref|YP_003859725.1| - 0.0041 17.4 0.0 0.0085 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663437|ref|YP_003859725.1| - 0.0045 16.9 0.3 0.011 15.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain ArgK PF03308.11 gi|305663437|ref|YP_003859725.1| - 0.0096 14.7 0.1 0.017 13.9 0.1 1.3 1 0 0 1 1 1 1 ArgK protein Rad17 PF03215.10 gi|305663437|ref|YP_003859725.1| - 0.012 14.3 0.0 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|305663437|ref|YP_003859725.1| - 0.015 14.3 0.0 1.9 7.4 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|305663437|ref|YP_003859725.1| - 0.018 15.8 0.6 0.081 13.7 0.3 2.4 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305663437|ref|YP_003859725.1| - 0.024 14.0 0.4 0.17 11.3 0.1 2.1 2 1 0 2 2 2 0 AAA-like domain DUF258 PF03193.11 gi|305663437|ref|YP_003859725.1| - 0.04 13.0 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MukB PF04310.7 gi|305663437|ref|YP_003859725.1| - 0.044 13.1 0.0 0.072 12.4 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal Diacid_rec PF05651.8 gi|305663437|ref|YP_003859725.1| - 0.068 12.5 0.2 0.12 11.7 0.1 1.3 1 0 0 1 1 1 0 Putative sugar diacid recognition AAA_30 PF13604.1 gi|305663437|ref|YP_003859725.1| - 0.069 12.7 0.1 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|305663437|ref|YP_003859725.1| - 0.071 12.3 0.1 0.51 9.5 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF4530 PF15039.1 gi|305663437|ref|YP_003859725.1| - 0.094 12.6 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4530) MutS_V PF00488.16 gi|305663437|ref|YP_003859725.1| - 0.13 11.6 0.0 0.76 9.1 0.0 2.0 2 0 0 2 2 2 0 MutS domain V KaiC PF06745.8 gi|305663438|ref|YP_003859726.1| - 2.1e-27 95.7 0.4 2.4e-27 95.5 0.3 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|305663438|ref|YP_003859726.1| - 2.2e-13 50.0 0.0 4.5e-13 49.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|305663438|ref|YP_003859726.1| - 1.7e-07 29.9 1.4 3.2e-07 29.0 1.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_14 PF13173.1 gi|305663438|ref|YP_003859726.1| - 9.9e-05 22.2 0.4 0.0019 18.1 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305663438|ref|YP_003859726.1| - 0.00037 20.0 0.0 0.00044 19.7 0.0 1.1 1 0 0 1 1 1 1 AAA-like domain CbiA PF01656.18 gi|305663438|ref|YP_003859726.1| - 0.0004 19.8 0.0 0.00061 19.2 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain NACHT PF05729.7 gi|305663438|ref|YP_003859726.1| - 0.0013 18.4 0.7 0.62 9.7 0.0 3.2 1 1 2 3 3 3 1 NACHT domain Arch_ATPase PF01637.13 gi|305663438|ref|YP_003859726.1| - 0.0014 18.3 0.3 0.002 17.8 0.2 1.2 1 0 0 1 1 1 1 Archaeal ATPase T2SE PF00437.15 gi|305663438|ref|YP_003859726.1| - 0.0014 17.5 0.0 0.0067 15.3 0.0 2.0 2 1 0 2 2 2 1 Type II/IV secretion system protein DUF835 PF05763.7 gi|305663438|ref|YP_003859726.1| - 0.0021 17.6 0.4 0.004 16.7 0.3 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF835) DUF815 PF05673.8 gi|305663438|ref|YP_003859726.1| - 0.0034 16.3 0.0 0.0052 15.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|305663438|ref|YP_003859726.1| - 0.0035 17.0 0.0 0.0082 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Elong_Iki1 PF10483.4 gi|305663438|ref|YP_003859726.1| - 0.011 15.1 0.1 0.012 14.9 0.1 1.2 1 0 0 1 1 1 0 Elongator subunit Iki1 DUF1108 PF06531.6 gi|305663438|ref|YP_003859726.1| - 0.012 15.7 0.8 0.028 14.5 0.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1108) AAA_22 PF13401.1 gi|305663438|ref|YP_003859726.1| - 0.013 15.6 0.0 0.05 13.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|305663438|ref|YP_003859726.1| - 0.013 14.9 0.1 0.04 13.4 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|305663438|ref|YP_003859726.1| - 0.023 14.1 0.0 0.049 13.0 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein PPV_E1_C PF00519.12 gi|305663438|ref|YP_003859726.1| - 0.025 13.1 0.2 0.08 11.5 0.1 2.0 1 1 1 2 2 2 0 Papillomavirus helicase AAA_24 PF13479.1 gi|305663438|ref|YP_003859726.1| - 0.026 14.0 0.0 0.16 11.4 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_31 PF13614.1 gi|305663438|ref|YP_003859726.1| - 0.027 14.3 0.0 0.056 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|305663438|ref|YP_003859726.1| - 0.041 12.9 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Zot PF05707.7 gi|305663438|ref|YP_003859726.1| - 0.05 13.0 0.0 0.075 12.4 0.0 1.5 1 1 0 1 1 1 0 Zonular occludens toxin (Zot) NB-ARC PF00931.17 gi|305663438|ref|YP_003859726.1| - 0.054 12.3 0.3 0.17 10.7 0.0 2.0 3 0 0 3 3 3 0 NB-ARC domain AAA_33 PF13671.1 gi|305663438|ref|YP_003859726.1| - 0.058 13.2 0.0 0.078 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|305663438|ref|YP_003859726.1| - 0.07 12.8 0.0 0.19 11.4 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|305663438|ref|YP_003859726.1| - 0.075 11.9 0.3 0.28 10.1 0.2 1.8 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|305663438|ref|YP_003859726.1| - 0.081 12.1 0.1 0.26 10.4 0.0 1.8 2 0 0 2 2 2 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|305663438|ref|YP_003859726.1| - 0.11 12.5 0.0 0.18 11.7 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.17 gi|305663438|ref|YP_003859726.1| - 0.14 12.3 0.1 0.44 10.7 0.0 1.8 1 1 1 2 2 2 0 RNA helicase SRP54 PF00448.17 gi|305663438|ref|YP_003859726.1| - 0.15 11.4 0.3 3 7.2 0.0 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Alpha_L_fucos PF01120.12 gi|305663439|ref|YP_003859727.1| - 1.2e-106 356.5 0.1 1.6e-106 356.1 0.1 1.1 1 0 0 1 1 1 1 Alpha-L-fucosidase DUF4434 PF14488.1 gi|305663439|ref|YP_003859727.1| - 0.0027 17.4 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4434) GHL6 PF14871.1 gi|305663439|ref|YP_003859727.1| - 0.0063 16.5 0.0 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Hypothetical glycosyl hydrolase 6 DUF498 PF04430.9 gi|305663440|ref|YP_003859728.1| - 6e-19 67.6 0.0 6.7e-19 67.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) DUF4203 PF13886.1 gi|305663441|ref|YP_003859729.1| - 0.4 10.1 42.7 0.27 10.6 25.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4203) GATase_6 PF13522.1 gi|305663442|ref|YP_003859730.1| - 0.00017 21.5 0.0 0.00027 20.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|305663442|ref|YP_003859730.1| - 0.0018 17.0 0.3 0.0054 15.4 0.0 1.7 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Cation_efflux PF01545.16 gi|305663443|ref|YP_003859731.1| - 8.9e-65 218.5 11.0 9.9e-65 218.4 7.6 1.0 1 0 0 1 1 1 1 Cation efflux family Spore_YhcN_YlaJ PF09580.5 gi|305663443|ref|YP_003859731.1| - 0.0019 18.3 0.7 0.0028 17.8 0.5 1.1 1 0 0 1 1 1 1 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) Ni_hydr_CYTB PF01292.15 gi|305663443|ref|YP_003859731.1| - 0.51 9.7 8.5 37 3.6 5.9 2.1 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 eIF-5a PF01287.15 gi|305663444|ref|YP_003859732.1| - 2e-15 56.4 0.1 3e-15 55.9 0.1 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|305663444|ref|YP_003859732.1| - 0.0001 22.1 0.0 0.00021 21.0 0.0 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|305663444|ref|YP_003859732.1| - 0.00019 21.0 1.8 0.00073 19.1 0.2 2.2 2 0 0 2 2 2 1 KOW motif EFP PF01132.15 gi|305663444|ref|YP_003859732.1| - 0.074 12.7 0.1 0.17 11.5 0.1 1.5 2 0 0 2 2 2 0 Elongation factor P (EF-P) OB domain SRP54 PF00448.17 gi|305663445|ref|YP_003859733.1| - 1.7e-67 226.6 0.0 2.6e-67 226.1 0.0 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|305663445|ref|YP_003859733.1| - 9.8e-30 102.8 0.1 2.5e-29 101.5 0.0 1.7 1 0 0 1 1 1 1 Signal peptide binding domain SRP54_N PF02881.14 gi|305663445|ref|YP_003859733.1| - 6e-12 45.4 1.4 1.1e-11 44.6 0.3 2.1 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain Zeta_toxin PF06414.7 gi|305663445|ref|YP_003859733.1| - 1e-05 24.7 0.0 2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.9 gi|305663445|ref|YP_003859733.1| - 2.9e-05 23.7 0.0 6.2e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|305663445|ref|YP_003859733.1| - 7.7e-05 22.1 0.1 0.00051 19.4 0.1 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_22 PF13401.1 gi|305663445|ref|YP_003859733.1| - 0.00026 21.1 0.0 0.00095 19.3 0.0 2.0 2 0 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|305663445|ref|YP_003859733.1| - 0.00032 20.3 0.0 0.00084 19.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_17 PF13207.1 gi|305663445|ref|YP_003859733.1| - 0.00035 21.3 0.3 0.0038 18.0 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|305663445|ref|YP_003859733.1| - 0.00053 19.5 0.0 0.00079 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|305663445|ref|YP_003859733.1| - 0.00059 19.7 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663445|ref|YP_003859733.1| - 0.032 14.5 1.8 0.12 12.7 0.1 2.8 3 1 0 3 3 3 0 AAA domain cobW PF02492.14 gi|305663445|ref|YP_003859733.1| - 0.035 13.5 0.0 0.36 10.2 0.0 2.2 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain KaiC PF06745.8 gi|305663445|ref|YP_003859733.1| - 0.046 12.8 0.1 0.29 10.2 0.0 2.3 3 0 0 3 3 3 0 KaiC ResIII PF04851.10 gi|305663445|ref|YP_003859733.1| - 0.047 13.5 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.13 gi|305663445|ref|YP_003859733.1| - 0.058 12.8 0.1 3.3 7.1 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|305663445|ref|YP_003859733.1| - 0.065 12.8 0.0 0.19 11.3 0.0 1.8 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|305663445|ref|YP_003859733.1| - 0.095 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|305663445|ref|YP_003859733.1| - 0.11 12.2 0.0 0.3 10.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) PduV-EutP PF10662.4 gi|305663445|ref|YP_003859733.1| - 0.11 11.9 0.3 5.7 6.4 0.0 2.4 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation THUMP PF02926.12 gi|305663446|ref|YP_003859734.1| - 7.8e-13 48.5 0.7 7.8e-13 48.5 0.5 2.1 2 1 0 2 2 2 1 THUMP domain Ribosomal_L21e PF01157.13 gi|305663447|ref|YP_003859735.1| - 1.9e-22 78.9 0.5 2.5e-22 78.5 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L21e RNA_pol_Rpb4 PF03874.11 gi|305663448|ref|YP_003859736.1| - 3.4e-12 46.4 5.3 3.9e-12 46.1 3.4 1.3 1 1 0 1 1 1 1 RNA polymerase Rpb4 FAD_binding_1 PF00667.15 gi|305663448|ref|YP_003859736.1| - 0.096 12.1 0.2 0.15 11.5 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain Miff PF05644.6 gi|305663448|ref|YP_003859736.1| - 0.11 12.0 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff TetR_C_5 PF08360.6 gi|305663448|ref|YP_003859736.1| - 0.12 12.2 1.8 0.65 9.9 0.1 2.3 1 1 1 2 2 2 0 QacR-like protein, C-terminal region DUF655 PF04919.7 gi|305663449|ref|YP_003859737.1| - 3.4e-62 209.3 1.6 4e-62 209.1 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.1 gi|305663449|ref|YP_003859737.1| - 6.2e-06 26.1 0.5 6.5e-05 22.9 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|305663449|ref|YP_003859737.1| - 0.01 15.7 0.2 0.028 14.3 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH PF00633.18 gi|305663449|ref|YP_003859737.1| - 0.025 14.2 0.1 0.093 12.4 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|305663449|ref|YP_003859737.1| - 0.059 13.5 0.3 0.18 11.9 0.2 1.8 1 1 0 1 1 1 0 Helix-hairpin-helix domain RrnaAD PF00398.15 gi|305663450|ref|YP_003859738.1| - 6.7e-35 120.3 0.2 8e-35 120.1 0.1 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|305663450|ref|YP_003859738.1| - 4.4e-07 29.1 0.3 1.5e-06 27.4 0.1 1.8 1 1 0 1 1 1 1 Putative methyltransferase Methyltransf_26 PF13659.1 gi|305663450|ref|YP_003859738.1| - 3.1e-05 23.9 0.0 4.2e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|305663450|ref|YP_003859738.1| - 0.0013 18.0 0.0 0.0021 17.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|305663450|ref|YP_003859738.1| - 0.003 18.1 0.0 0.011 16.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663450|ref|YP_003859738.1| - 0.013 15.0 0.2 0.043 13.3 0.1 1.9 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305663450|ref|YP_003859738.1| - 0.022 14.4 0.0 0.037 13.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|305663450|ref|YP_003859738.1| - 0.025 14.0 1.1 0.45 9.9 0.1 2.6 2 1 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|305663450|ref|YP_003859738.1| - 0.054 13.1 0.0 0.15 11.7 0.0 1.8 1 1 1 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305663450|ref|YP_003859738.1| - 0.065 13.7 0.0 1.7 9.1 0.0 2.8 3 0 0 3 3 3 0 Methyltransferase domain DOT1 PF08123.8 gi|305663450|ref|YP_003859738.1| - 0.073 12.3 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Histone methylation protein DOT1 FmrO PF07091.6 gi|305663450|ref|YP_003859738.1| - 0.077 11.9 0.0 0.14 11.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_12 PF08242.7 gi|305663450|ref|YP_003859738.1| - 0.079 13.4 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|305663450|ref|YP_003859738.1| - 0.17 12.2 0.0 0.83 10.0 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain MTS PF05175.9 gi|305663451|ref|YP_003859739.1| - 2.3e-11 43.3 0.0 2.9e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|305663451|ref|YP_003859739.1| - 2.5e-09 37.1 0.0 3.3e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663451|ref|YP_003859739.1| - 3.7e-05 23.3 0.1 5.3e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305663451|ref|YP_003859739.1| - 4.7e-05 23.9 0.0 5.8e-05 23.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|305663451|ref|YP_003859739.1| - 0.0017 17.4 0.0 0.0024 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|305663451|ref|YP_003859739.1| - 0.0043 17.3 0.0 0.0062 16.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305663451|ref|YP_003859739.1| - 0.0055 17.1 0.0 0.03 14.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305663451|ref|YP_003859739.1| - 0.0097 15.4 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Met_10 PF02475.11 gi|305663451|ref|YP_003859739.1| - 0.016 14.8 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein UPF0020 PF01170.13 gi|305663451|ref|YP_003859739.1| - 0.041 13.4 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 SpoU_methylase PF00588.14 gi|305663452|ref|YP_003859740.1| - 7.6e-29 100.4 0.0 1e-28 99.9 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.4 gi|305663452|ref|YP_003859740.1| - 0.0035 16.8 0.0 0.021 14.3 0.0 2.0 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase DUF22 PF01629.11 gi|305663452|ref|YP_003859740.1| - 0.071 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF22 GAD PF02938.9 gi|305663452|ref|YP_003859740.1| - 0.1 12.7 0.0 2.7 8.2 0.0 2.4 1 1 1 2 2 2 0 GAD domain Ribosomal_L16 PF00252.13 gi|305663453|ref|YP_003859741.1| - 4.8e-33 113.7 0.1 5.8e-33 113.4 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.12 gi|305663454|ref|YP_003859742.1| - 3.4e-54 184.1 0.1 4.4e-54 183.7 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein MTS PF05175.9 gi|305663455|ref|YP_003859743.1| - 1.7e-11 43.8 0.0 3.6e-11 42.7 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|305663455|ref|YP_003859743.1| - 3.8e-09 36.5 0.0 4.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|305663455|ref|YP_003859743.1| - 5e-09 35.6 0.1 6.7e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|305663455|ref|YP_003859743.1| - 4.5e-08 32.8 0.1 5.7e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305663455|ref|YP_003859743.1| - 0.00028 21.4 0.0 0.00038 21.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|305663455|ref|YP_003859743.1| - 0.0026 18.0 0.0 0.0039 17.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305663455|ref|YP_003859743.1| - 0.0029 18.0 0.0 0.005 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305663455|ref|YP_003859743.1| - 0.039 14.4 0.0 0.084 13.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305663455|ref|YP_003859743.1| - 0.055 13.1 0.1 0.071 12.8 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|305663455|ref|YP_003859743.1| - 0.077 12.5 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PQ-loop PF04193.9 gi|305663455|ref|YP_003859743.1| - 0.48 9.9 2.3 8.2 6.0 0.1 2.6 2 0 0 2 2 2 0 PQ loop repeat ECR1_N PF14382.1 gi|305663456|ref|YP_003859744.1| - 5.9e-12 44.6 0.1 1.3e-11 43.6 0.0 1.6 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region EXOSC1 PF10447.4 gi|305663456|ref|YP_003859744.1| - 8.8e-07 28.8 0.4 2.2e-06 27.5 0.1 1.8 2 0 0 2 2 2 1 Exosome component EXOSC1/CSL4 S1 PF00575.18 gi|305663456|ref|YP_003859744.1| - 0.0015 18.5 0.6 0.014 15.4 0.4 2.2 1 1 0 1 1 1 1 S1 RNA binding domain DZR PF12773.2 gi|305663456|ref|YP_003859744.1| - 0.0047 16.7 0.3 0.0078 16.0 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-NADH-PPase PF09297.6 gi|305663456|ref|YP_003859744.1| - 0.01 15.2 2.3 0.021 14.3 1.6 1.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain DNA_RNApol_7kD PF03604.8 gi|305663456|ref|YP_003859744.1| - 0.011 15.1 1.3 0.027 13.9 0.9 1.6 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.6 gi|305663456|ref|YP_003859744.1| - 0.019 14.5 0.8 0.12 12.0 0.5 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Auto_anti-p27 PF06677.7 gi|305663456|ref|YP_003859744.1| - 0.074 12.8 0.9 0.14 11.9 0.7 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_2 PF13240.1 gi|305663456|ref|YP_003859744.1| - 0.075 12.5 2.9 0.25 10.8 2.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|305663456|ref|YP_003859744.1| - 0.087 12.5 0.3 0.15 11.8 0.2 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|305663456|ref|YP_003859744.1| - 0.11 11.7 3.9 0.76 9.0 2.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain zf-C4_ClpX PF06689.8 gi|305663456|ref|YP_003859744.1| - 0.22 11.0 3.2 0.28 10.7 0.2 2.2 2 0 0 2 2 2 0 ClpX C4-type zinc finger RNA_POL_M_15KD PF02150.11 gi|305663456|ref|YP_003859744.1| - 0.26 10.9 1.4 0.48 10.1 1.0 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.1 gi|305663456|ref|YP_003859744.1| - 0.35 10.6 3.2 2.8 7.7 2.2 2.2 1 1 1 2 2 2 0 Nudix N-terminal DUF2067 PF09840.4 gi|305663457|ref|YP_003859745.1| - 3.8e-13 49.3 0.1 4.5e-13 49.1 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2067) RNA_pol_L_2 PF13656.1 gi|305663458|ref|YP_003859746.1| - 8.6e-18 63.5 0.1 1.1e-17 63.2 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|305663458|ref|YP_003859746.1| - 0.00056 18.9 0.0 0.00077 18.5 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain PP2C_2 PF13672.1 gi|305663458|ref|YP_003859746.1| - 0.078 12.3 0.0 0.083 12.2 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 2C DUF3926 PF13080.1 gi|305663458|ref|YP_003859746.1| - 0.13 11.8 0.2 0.42 10.1 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3926) GatB_N PF02934.10 gi|305663460|ref|YP_003859748.1| - 6e-109 363.3 0.0 8.8e-109 362.8 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|305663460|ref|YP_003859748.1| - 2.2e-35 121.5 0.2 3.6e-35 120.8 0.1 1.3 1 0 0 1 1 1 1 GatB domain Amidase PF01425.16 gi|305663461|ref|YP_003859749.1| - 2.7e-136 454.9 0.0 3.1e-136 454.7 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.10 gi|305663462|ref|YP_003859750.1| - 4.3e-09 36.0 0.1 5.1e-09 35.8 0.1 1.1 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Pribosyltran PF00156.22 gi|305663463|ref|YP_003859751.1| - 2.1e-13 50.0 0.0 4e-13 49.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain ResIII PF04851.10 gi|305663464|ref|YP_003859752.1| - 2.2e-20 73.2 0.1 2.7e-19 69.7 0.1 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|305663464|ref|YP_003859752.1| - 2e-16 59.5 2.7 5.7e-16 58.1 0.1 2.9 4 0 0 4 4 4 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|305663464|ref|YP_003859752.1| - 5.7e-12 45.4 0.0 3.1e-10 39.8 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 gi|305663464|ref|YP_003859752.1| - 3.3e-10 39.2 0.0 9.6e-07 27.8 0.0 2.6 2 1 1 3 3 3 2 SNF2 family N-terminal domain AAA_22 PF13401.1 gi|305663464|ref|YP_003859752.1| - 0.0019 18.3 0.4 0.086 12.9 0.0 2.9 2 1 0 2 2 2 1 AAA domain DapH_N PF08503.5 gi|305663464|ref|YP_003859752.1| - 0.0048 16.9 0.2 2.1 8.5 0.1 3.6 2 1 1 3 3 3 1 Tetrahydrodipicolinate succinyltransferase N-terminal PhoH PF02562.11 gi|305663464|ref|YP_003859752.1| - 0.0083 15.3 0.1 0.035 13.3 0.0 2.1 2 0 0 2 2 2 1 PhoH-like protein AAA PF00004.24 gi|305663464|ref|YP_003859752.1| - 0.026 14.7 0.8 0.082 13.1 0.0 2.3 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|305663464|ref|YP_003859752.1| - 0.03 14.0 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 0 Part of AAA domain AAA_11 PF13086.1 gi|305663464|ref|YP_003859752.1| - 0.034 13.7 0.8 13 5.2 0.0 2.9 2 1 0 3 3 3 0 AAA domain T2SE PF00437.15 gi|305663464|ref|YP_003859752.1| - 0.047 12.5 0.4 0.088 11.7 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein SPT16 PF08644.6 gi|305663464|ref|YP_003859752.1| - 0.074 12.8 1.8 0.15 11.8 1.2 1.4 1 0 0 1 1 1 0 FACT complex subunit (SPT16/CDC68) FlgN PF05130.7 gi|305663464|ref|YP_003859752.1| - 0.083 13.1 2.6 0.19 11.9 1.8 1.6 1 0 0 1 1 1 0 FlgN protein DUF2324 PF10086.4 gi|305663467|ref|YP_003859755.1| - 1.2e-06 27.9 4.3 1.3e-06 27.8 3.0 1.1 1 0 0 1 1 1 1 Putative membrane peptidase family (DUF2324) ORC3_N PF07034.6 gi|305663467|ref|YP_003859755.1| - 0.13 11.2 1.0 0.15 11.0 0.7 1.1 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 3 N-terminus Polysacc_synt_C PF14667.1 gi|305663468|ref|YP_003859756.1| - 0.0026 17.5 5.1 0.0027 17.5 3.5 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain Cg6151-P PF10233.4 gi|305663468|ref|YP_003859756.1| - 0.043 13.8 2.9 0.048 13.6 2.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein CG6151-P AIRS_C PF02769.17 gi|305663469|ref|YP_003859757.1| - 2e-20 73.3 0.2 4.3e-20 72.2 0.1 1.6 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|305663469|ref|YP_003859757.1| - 1.8e-11 44.1 0.1 6.2e-11 42.4 0.0 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain ECF-ribofla_trS PF07155.7 gi|305663470|ref|YP_003859758.1| - 2.6e-22 79.3 22.4 1.6e-16 60.5 11.0 2.1 1 1 1 2 2 2 2 ECF-type riboflavin transporter, S component DUF4239 PF14023.1 gi|305663470|ref|YP_003859758.1| - 1.8 7.8 4.1 0.42 9.9 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4239) Cytochrome-c551 PF10643.4 gi|305663470|ref|YP_003859758.1| - 6.1 6.0 8.4 1.3 8.2 1.4 2.2 1 1 1 2 2 2 0 Photosystem P840 reaction-centre cytochrome c-551 ABC_tran PF00005.22 gi|305663471|ref|YP_003859759.1| - 8e-41 139.5 0.0 3.2e-20 72.8 0.0 2.8 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305663471|ref|YP_003859759.1| - 1.2e-26 94.3 5.4 3.4e-09 37.0 0.0 4.1 3 1 1 4 4 4 4 AAA domain AAA_15 PF13175.1 gi|305663471|ref|YP_003859759.1| - 2.9e-17 62.8 0.6 0.00029 20.0 0.0 4.1 4 0 0 4 4 4 4 AAA ATPase domain SMC_N PF02463.14 gi|305663471|ref|YP_003859759.1| - 4.7e-16 58.6 4.2 0.0003 20.0 0.0 4.1 4 0 0 4 4 4 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305663471|ref|YP_003859759.1| - 1.1e-10 40.8 0.3 0.0002 20.8 0.0 2.3 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|305663471|ref|YP_003859759.1| - 1.6e-10 41.8 0.4 6.7e-05 23.6 0.0 2.9 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|305663471|ref|YP_003859759.1| - 2.3e-10 41.1 1.7 1.7e-05 25.2 0.6 2.4 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305663471|ref|YP_003859759.1| - 2.1e-09 37.5 1.5 0.0035 17.4 0.0 3.1 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|305663471|ref|YP_003859759.1| - 3.5e-09 36.9 0.1 0.0015 18.5 0.0 2.8 3 0 0 3 3 3 2 AAA ATPase domain AAA_18 PF13238.1 gi|305663471|ref|YP_003859759.1| - 1.3e-08 35.2 0.1 0.015 15.6 0.0 3.4 2 1 1 3 3 3 2 AAA domain NACHT PF05729.7 gi|305663471|ref|YP_003859759.1| - 1.3e-07 31.4 0.7 0.00055 19.6 0.0 2.7 2 1 0 2 2 2 2 NACHT domain AAA_19 PF13245.1 gi|305663471|ref|YP_003859759.1| - 2.4e-07 30.4 0.0 0.0064 16.2 0.0 2.6 2 0 0 2 2 2 2 Part of AAA domain DUF258 PF03193.11 gi|305663471|ref|YP_003859759.1| - 2.6e-07 29.9 0.1 0.02 14.0 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|305663471|ref|YP_003859759.1| - 3e-07 30.4 0.0 0.04 13.8 0.0 3.3 2 2 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|305663471|ref|YP_003859759.1| - 4.5e-07 29.6 0.2 0.037 13.9 0.2 3.8 2 2 0 2 2 2 2 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|305663471|ref|YP_003859759.1| - 1.1e-06 28.4 0.6 0.05 13.2 0.0 2.9 3 1 0 3 3 2 2 Archaeal ATPase AAA_25 PF13481.1 gi|305663471|ref|YP_003859759.1| - 3.2e-06 26.6 0.0 0.048 13.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain MobB PF03205.9 gi|305663471|ref|YP_003859759.1| - 3.3e-06 26.8 0.4 0.023 14.3 0.0 2.6 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|305663471|ref|YP_003859759.1| - 3.9e-06 26.4 0.4 0.00088 18.7 0.0 2.8 3 0 0 3 3 3 1 FtsK/SpoIIIE family T2SE PF00437.15 gi|305663471|ref|YP_003859759.1| - 5.2e-06 25.5 0.0 0.091 11.6 0.0 2.5 2 1 0 2 2 2 2 Type II/IV secretion system protein AAA_30 PF13604.1 gi|305663471|ref|YP_003859759.1| - 5.9e-06 26.0 0.0 0.025 14.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|305663471|ref|YP_003859759.1| - 9.2e-06 25.5 3.6 0.019 14.8 0.0 4.1 3 1 0 3 3 3 1 AAA domain RNA_helicase PF00910.17 gi|305663471|ref|YP_003859759.1| - 1.1e-05 25.4 0.0 0.0078 16.3 0.0 2.6 2 0 0 2 2 2 1 RNA helicase UPF0079 PF02367.12 gi|305663471|ref|YP_003859759.1| - 3.2e-05 23.5 0.0 0.11 12.0 0.0 2.8 3 0 0 3 3 2 2 Uncharacterised P-loop hydrolase UPF0079 AAA_10 PF12846.2 gi|305663471|ref|YP_003859759.1| - 4.2e-05 23.1 4.6 0.012 15.1 0.0 2.8 3 0 0 3 3 3 2 AAA-like domain AAA PF00004.24 gi|305663471|ref|YP_003859759.1| - 0.00012 22.2 0.1 0.66 10.1 0.0 3.0 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|305663471|ref|YP_003859759.1| - 0.00017 21.2 0.0 0.088 12.3 0.0 2.3 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family cobW PF02492.14 gi|305663471|ref|YP_003859759.1| - 0.00017 21.0 0.5 0.16 11.4 0.2 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain G-alpha PF00503.15 gi|305663471|ref|YP_003859759.1| - 0.00046 18.9 0.0 0.55 8.8 0.0 2.2 2 0 0 2 2 2 2 G-protein alpha subunit Miro PF08477.8 gi|305663471|ref|YP_003859759.1| - 0.00059 20.3 0.0 0.58 10.6 0.0 2.5 2 0 0 2 2 2 1 Miro-like protein PhoH PF02562.11 gi|305663471|ref|YP_003859759.1| - 0.00063 19.0 0.0 0.3 10.3 0.0 2.5 2 0 0 2 2 2 1 PhoH-like protein MMR_HSR1 PF01926.18 gi|305663471|ref|YP_003859759.1| - 0.00077 19.4 0.1 0.9 9.5 0.0 2.6 2 1 0 2 2 2 1 50S ribosome-binding GTPase NB-ARC PF00931.17 gi|305663471|ref|YP_003859759.1| - 0.00084 18.2 0.3 1.1 8.0 0.0 2.5 3 0 0 3 3 2 2 NB-ARC domain AAA_28 PF13521.1 gi|305663471|ref|YP_003859759.1| - 0.001 19.0 1.4 0.71 9.8 0.3 2.7 2 0 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|305663471|ref|YP_003859759.1| - 0.0013 17.6 0.0 0.24 10.1 0.0 2.1 2 0 0 2 2 2 1 ArgK protein NTPase_1 PF03266.10 gi|305663471|ref|YP_003859759.1| - 0.0013 18.4 0.3 0.52 10.0 0.0 2.7 3 0 0 3 3 2 1 NTPase AAA_24 PF13479.1 gi|305663471|ref|YP_003859759.1| - 0.0016 18.1 0.3 2.5 7.6 0.0 3.1 3 0 0 3 3 3 0 AAA domain ABC_ATPase PF09818.4 gi|305663471|ref|YP_003859759.1| - 0.0018 16.9 0.1 0.76 8.2 0.1 2.3 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_11 PF13086.1 gi|305663471|ref|YP_003859759.1| - 0.0018 17.8 0.0 0.76 9.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|305663471|ref|YP_003859759.1| - 0.0022 17.8 4.2 0.14 11.9 0.2 3.0 3 0 0 3 3 3 1 Domain of unknown function DUF87 Rad17 PF03215.10 gi|305663471|ref|YP_003859759.1| - 0.0022 16.7 0.1 0.26 9.9 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_5 PF07728.9 gi|305663471|ref|YP_003859759.1| - 0.0028 17.3 0.2 0.4 10.3 0.0 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|305663471|ref|YP_003859759.1| - 0.0037 16.4 0.0 0.81 8.8 0.0 2.4 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Zeta_toxin PF06414.7 gi|305663471|ref|YP_003859759.1| - 0.0042 16.2 0.0 2.5 7.1 0.0 2.4 2 1 0 2 2 2 0 Zeta toxin APS_kinase PF01583.15 gi|305663471|ref|YP_003859759.1| - 0.0056 16.3 1.0 0.18 11.4 0.0 2.4 2 0 0 2 2 2 1 Adenylylsulphate kinase ATP_bind_1 PF03029.12 gi|305663471|ref|YP_003859759.1| - 0.0059 16.1 0.4 2.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein PIF1 PF05970.9 gi|305663471|ref|YP_003859759.1| - 0.0065 15.4 0.0 0.34 9.8 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase Thymidylate_kin PF02223.12 gi|305663471|ref|YP_003859759.1| - 0.0067 15.8 0.0 0.5 9.7 0.0 3.0 3 0 0 3 3 3 1 Thymidylate kinase Viral_helicase1 PF01443.13 gi|305663471|ref|YP_003859759.1| - 0.0068 15.9 0.9 0.8 9.1 0.0 2.5 3 0 0 3 3 2 1 Viral (Superfamily 1) RNA helicase Pox_A32 PF04665.7 gi|305663471|ref|YP_003859759.1| - 0.013 14.7 0.4 0.35 10.1 0.0 2.6 3 0 0 3 3 2 0 Poxvirus A32 protein KaiC PF06745.8 gi|305663471|ref|YP_003859759.1| - 0.038 13.1 0.8 4.3 6.3 0.0 2.9 4 0 0 4 4 3 0 KaiC ATP-synt_ab PF00006.20 gi|305663471|ref|YP_003859759.1| - 0.039 13.4 0.1 4 6.8 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain MutS_V PF00488.16 gi|305663471|ref|YP_003859759.1| - 0.047 13.0 0.0 2.7 7.3 0.0 2.4 2 0 0 2 2 2 0 MutS domain V AAA_PrkA PF08298.6 gi|305663471|ref|YP_003859759.1| - 0.049 12.3 0.0 0.11 11.1 0.0 1.6 2 0 0 2 2 1 0 PrkA AAA domain Adeno_IVa2 PF02456.10 gi|305663471|ref|YP_003859759.1| - 0.052 12.1 0.2 6.4 5.3 0.0 2.2 2 0 0 2 2 2 0 Adenovirus IVa2 protein DUF927 PF06048.6 gi|305663471|ref|YP_003859759.1| - 0.064 12.5 0.5 6.7 5.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF927) IstB_IS21 PF01695.12 gi|305663471|ref|YP_003859759.1| - 0.087 12.2 1.2 32 3.8 0.0 3.5 4 0 0 4 4 4 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|305663471|ref|YP_003859759.1| - 0.088 11.4 0.1 0.91 8.0 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain Sigma54_activat PF00158.21 gi|305663471|ref|YP_003859759.1| - 0.11 11.9 0.0 7.8 5.9 0.0 2.4 2 0 0 2 2 2 0 Sigma-54 interaction domain SRP54 PF00448.17 gi|305663471|ref|YP_003859759.1| - 0.13 11.6 0.0 15 4.9 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PBP PF01161.15 gi|305663473|ref|YP_003859761.1| - 6.1e-32 110.4 0.0 7.3e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Radical_SAM PF04055.16 gi|305663474|ref|YP_003859762.1| - 1e-13 51.7 0.0 2.1e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily OrfB_Zn_ribbon PF07282.6 gi|305663474|ref|YP_003859762.1| - 0.00021 20.9 0.1 0.00021 20.9 0.0 2.3 3 0 0 3 3 2 1 Putative transposase DNA-binding domain zinc_ribbon_2 PF13240.1 gi|305663474|ref|YP_003859762.1| - 0.01 15.2 8.4 1.6 8.3 0.1 3.6 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|305663474|ref|YP_003859762.1| - 0.012 15.3 0.0 0.012 15.3 0.0 3.0 3 0 0 3 3 3 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305663474|ref|YP_003859762.1| - 0.014 14.5 9.8 0.8 8.9 0.1 3.8 4 0 0 4 4 4 0 zinc-ribbon domain Fer4_14 PF13394.1 gi|305663474|ref|YP_003859762.1| - 0.072 13.1 0.0 0.2 11.6 0.0 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain Desulfoferrod_N PF06397.7 gi|305663474|ref|YP_003859762.1| - 0.097 12.0 6.0 0.51 9.7 0.0 3.7 4 0 0 4 4 4 0 Desulfoferrodoxin, N-terminal domain ZZ PF00569.12 gi|305663474|ref|YP_003859762.1| - 0.17 11.4 4.0 18 4.9 0.0 3.5 3 0 0 3 3 3 0 Zinc finger, ZZ type Zn-ribbon_8 PF09723.5 gi|305663474|ref|YP_003859762.1| - 0.68 9.9 0.1 0.68 9.9 0.0 3.3 4 0 0 4 4 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|305663474|ref|YP_003859762.1| - 0.87 8.9 8.4 0.13 11.6 1.0 3.1 3 1 1 4 4 4 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|305663474|ref|YP_003859762.1| - 0.92 9.2 9.2 5.8 6.6 0.0 3.7 4 0 0 4 4 3 0 Nudix N-terminal zinc_ribbon_4 PF13717.1 gi|305663474|ref|YP_003859762.1| - 1.2 8.8 9.6 4.6 7.0 0.0 3.6 4 0 0 4 4 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|305663474|ref|YP_003859762.1| - 1.6 9.1 7.0 29 5.1 0.1 3.4 3 0 0 3 3 3 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|305663474|ref|YP_003859762.1| - 2.5 7.7 10.6 3.8 7.1 0.0 3.6 4 0 0 4 4 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|305663474|ref|YP_003859762.1| - 5.9 6.6 11.1 7.2 6.3 0.3 3.5 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|305663474|ref|YP_003859762.1| - 5.9 6.7 18.9 0.1 12.4 1.9 3.6 4 1 1 5 5 5 0 Transposase zinc-ribbon domain zf-CCHC_5 PF14787.1 gi|305663474|ref|YP_003859762.1| - 6.2 6.4 8.7 4.4 6.8 1.1 2.7 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger RNA_POL_M_15KD PF02150.11 gi|305663474|ref|YP_003859762.1| - 6.7 6.4 10.6 6.3 6.5 0.3 3.8 3 1 0 3 3 3 0 RNA polymerases M/15 Kd subunit NOB1_Zn_bind PF08772.6 gi|305663474|ref|YP_003859762.1| - 9.3 6.1 9.2 6.7 6.6 0.0 3.3 2 1 1 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like UPF0066 PF01980.11 gi|305663475|ref|YP_003859763.1| - 2.6e-33 114.4 0.0 4.6e-33 113.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0066 Spherulin4 PF12138.3 gi|305663475|ref|YP_003859763.1| - 0.012 15.0 0.0 0.014 14.8 0.0 1.1 1 0 0 1 1 1 0 Spherulation-specific family 4 Thymidylate_kin PF02223.12 gi|305663476|ref|YP_003859764.1| - 2.2e-42 144.5 0.0 2.5e-42 144.3 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_28 PF13521.1 gi|305663476|ref|YP_003859764.1| - 3.8e-06 26.9 0.0 4.6e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305663476|ref|YP_003859764.1| - 4.4e-05 24.2 0.1 7.8e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663476|ref|YP_003859764.1| - 0.00062 20.0 0.0 0.0019 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain APS_kinase PF01583.15 gi|305663476|ref|YP_003859764.1| - 0.0029 17.2 0.0 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_33 PF13671.1 gi|305663476|ref|YP_003859764.1| - 0.0047 16.8 0.0 0.0078 16.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|305663476|ref|YP_003859764.1| - 0.0056 15.7 0.1 0.016 14.2 0.0 1.8 2 1 0 2 2 2 1 Zeta toxin KaiC PF06745.8 gi|305663476|ref|YP_003859764.1| - 0.011 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 KaiC PPK2 PF03976.9 gi|305663476|ref|YP_003859764.1| - 0.012 14.8 0.0 0.087 12.0 0.0 2.0 2 0 0 2 2 2 0 Polyphosphate kinase 2 (PPK2) UPF0079 PF02367.12 gi|305663476|ref|YP_003859764.1| - 0.019 14.6 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|305663476|ref|YP_003859764.1| - 0.021 14.9 0.0 0.032 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Arf PF00025.16 gi|305663476|ref|YP_003859764.1| - 0.022 13.9 0.0 0.035 13.3 0.0 1.2 1 0 0 1 1 1 0 ADP-ribosylation factor family Arch_ATPase PF01637.13 gi|305663476|ref|YP_003859764.1| - 0.026 14.2 0.0 0.038 13.6 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase SKI PF01202.17 gi|305663476|ref|YP_003859764.1| - 0.029 14.2 0.0 2.3 8.0 0.0 2.3 2 1 0 2 2 2 0 Shikimate kinase AAA_30 PF13604.1 gi|305663476|ref|YP_003859764.1| - 0.043 13.3 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|305663476|ref|YP_003859764.1| - 0.052 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.1 gi|305663476|ref|YP_003859764.1| - 0.057 13.3 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|305663476|ref|YP_003859764.1| - 0.064 12.4 0.0 0.084 12.0 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|305663476|ref|YP_003859764.1| - 0.074 13.0 0.0 0.094 12.6 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain NACHT PF05729.7 gi|305663476|ref|YP_003859764.1| - 0.075 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 NACHT domain CbiA PF01656.18 gi|305663476|ref|YP_003859764.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain SRP54 PF00448.17 gi|305663476|ref|YP_003859764.1| - 0.13 11.6 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Torsin PF06309.6 gi|305663476|ref|YP_003859764.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 Torsin Kelch_6 PF13964.1 gi|305663478|ref|YP_003859766.1| - 0.64 10.2 6.1 38 4.6 0.0 4.2 5 0 0 5 5 5 0 Kelch motif ABC2_membrane PF01061.19 gi|305663479|ref|YP_003859767.1| - 3.8e-32 111.1 16.8 5.9e-32 110.5 11.7 1.3 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|305663479|ref|YP_003859767.1| - 1.7e-18 66.7 28.3 2.3e-18 66.3 19.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|305663479|ref|YP_003859767.1| - 3.1e-05 22.9 22.7 5.5e-05 22.1 15.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|305663479|ref|YP_003859767.1| - 0.00039 19.6 25.2 0.00057 19.1 17.5 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.6 gi|305663479|ref|YP_003859767.1| - 0.26 10.8 24.0 0.39 10.2 15.2 2.3 1 1 0 2 2 2 0 ABC-2 family transporter protein TM_helix PF05552.7 gi|305663479|ref|YP_003859767.1| - 1.4 8.6 9.6 11 5.8 6.7 2.3 1 1 0 1 1 1 0 Conserved TM helix ABC_tran PF00005.22 gi|305663480|ref|YP_003859768.1| - 3.1e-29 102.0 0.0 5.9e-29 101.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663480|ref|YP_003859768.1| - 6.2e-15 55.9 1.1 4.3e-09 36.7 0.0 2.8 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|305663480|ref|YP_003859768.1| - 8e-05 21.8 0.6 0.065 12.2 0.0 2.4 3 0 0 3 3 3 2 AAA ATPase domain AAA_23 PF13476.1 gi|305663480|ref|YP_003859768.1| - 0.0028 18.0 0.4 0.013 15.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|305663480|ref|YP_003859768.1| - 0.0088 15.2 0.0 0.56 9.3 0.0 2.4 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|305663480|ref|YP_003859768.1| - 0.012 15.6 0.2 0.032 14.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|305663480|ref|YP_003859768.1| - 0.015 14.7 0.1 0.11 11.9 0.0 2.2 2 1 1 3 3 3 0 AAA-like domain AAA_17 PF13207.1 gi|305663480|ref|YP_003859768.1| - 0.018 15.8 0.3 0.072 13.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|305663480|ref|YP_003859768.1| - 0.019 14.4 0.1 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.1 gi|305663480|ref|YP_003859768.1| - 0.044 12.2 0.0 0.078 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|305663480|ref|YP_003859768.1| - 0.054 13.6 0.0 0.2 11.8 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|305663480|ref|YP_003859768.1| - 0.068 10.5 0.2 0.096 10.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RNA_helicase PF00910.17 gi|305663480|ref|YP_003859768.1| - 0.1 12.8 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|305663480|ref|YP_003859768.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|305663480|ref|YP_003859768.1| - 0.17 11.0 0.0 0.28 10.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Alpha-L-AF_C PF06964.7 gi|305663481|ref|YP_003859769.1| - 2.1e-34 118.8 0.2 2.9e-34 118.3 0.2 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus Glyco_hydro_79n PF03662.9 gi|305663481|ref|YP_003859769.1| - 0.0027 16.3 0.3 0.0047 15.5 0.2 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 79, N-terminal domain DeoC PF01791.4 gi|305663482|ref|YP_003859770.1| - 2.4e-36 125.1 0.1 2.7e-36 125.0 0.1 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase Glu_synthase PF01645.12 gi|305663482|ref|YP_003859770.1| - 0.0063 15.4 0.2 0.011 14.7 0.1 1.4 1 0 0 1 1 1 1 Conserved region in glutamate synthase HSP20 PF00011.16 gi|305663483|ref|YP_003859771.1| - 0.00018 21.3 0.0 0.00024 20.9 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PAC2 PF09754.4 gi|305663484|ref|YP_003859772.1| - 2.1e-30 106.2 0.0 2.4e-30 106.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Aminotran_4 PF01063.14 gi|305663485|ref|YP_003859773.1| - 6.5e-50 169.7 0.0 7.7e-50 169.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV MobB PF03205.9 gi|305663486|ref|YP_003859774.1| - 2.6e-10 40.1 0.1 3.7e-10 39.6 0.1 1.2 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B FeS PF04060.8 gi|305663486|ref|YP_003859774.1| - 3.1e-08 33.0 1.4 5.9e-08 32.1 1.0 1.5 1 0 0 1 1 1 1 Putative Fe-S cluster VirC1 PF07015.6 gi|305663486|ref|YP_003859774.1| - 0.089 11.8 0.0 0.66 9.0 0.0 2.0 2 0 0 2 2 2 0 VirC1 protein LpxK PF02606.9 gi|305663486|ref|YP_003859774.1| - 0.1 11.5 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase DUF3265 PF11665.3 gi|305663486|ref|YP_003859774.1| - 0.15 11.9 0.2 0.24 11.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3265) adh_short PF00106.20 gi|305663487|ref|YP_003859775.1| - 6.5e-31 107.5 0.0 1.1e-30 106.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|305663487|ref|YP_003859775.1| - 2.4e-27 96.2 0.0 3.2e-27 95.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|305663487|ref|YP_003859775.1| - 2.4e-09 37.1 0.0 4.3e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|305663487|ref|YP_003859775.1| - 0.0011 18.4 0.1 0.0019 17.7 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|305663487|ref|YP_003859775.1| - 0.0096 14.6 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DUF1776 PF08643.5 gi|305663487|ref|YP_003859775.1| - 0.11 11.6 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) PepSY PF03413.14 gi|305663488|ref|YP_003859776.1| - 0.013 16.1 6.3 0.047 14.3 0.0 3.4 4 0 0 4 4 4 0 Peptidase propeptide and YPEB domain DUF16 PF01519.11 gi|305663488|ref|YP_003859776.1| - 0.21 11.8 0.4 0.33 11.1 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF16 CENP-Q PF13094.1 gi|305663488|ref|YP_003859776.1| - 0.22 11.5 2.2 0.36 10.8 1.5 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit bZIP_1 PF00170.16 gi|305663488|ref|YP_003859776.1| - 0.54 10.2 3.2 0.86 9.6 2.2 1.3 1 0 0 1 1 1 0 bZIP transcription factor Ni_hydr_CYTB PF01292.15 gi|305663488|ref|YP_003859776.1| - 0.74 9.1 5.4 1.2 8.4 3.7 1.3 1 0 0 1 1 1 0 Prokaryotic cytochrome b561 Cyclophil_like PF04126.8 gi|305663489|ref|YP_003859777.1| - 4.1e-42 142.5 0.1 4.5e-42 142.4 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Oxidored_q1 PF00361.15 gi|305663490|ref|YP_003859778.1| - 6.9e-38 130.4 38.6 6.9e-38 130.4 26.7 5.1 3 1 2 5 5 5 1 NADH-Ubiquinone/plastoquinone (complex I), various chains MnhB PF04039.8 gi|305663491|ref|YP_003859779.1| - 2.7e-14 53.2 13.7 2.7e-14 53.2 9.5 2.8 2 2 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.4 gi|305663491|ref|YP_003859779.1| - 1 8.6 8.2 0.075 12.3 0.7 2.6 2 1 1 3 3 3 0 Predicted membrane protein (DUF2106) Oxidored_q2 PF00420.19 gi|305663492|ref|YP_003859780.1| - 9.6e-15 53.9 5.8 1.3e-14 53.5 4.0 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Ninjurin PF04923.7 gi|305663492|ref|YP_003859780.1| - 4 7.2 10.2 1.1 8.9 2.7 2.0 2 0 0 2 2 2 0 Ninjurin Oxidored_q1 PF00361.15 gi|305663493|ref|YP_003859781.1| - 9.3e-53 179.2 30.3 9.3e-53 179.2 21.0 3.0 1 1 1 3 3 3 2 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|305663493|ref|YP_003859781.1| - 0.00061 19.2 7.0 0.00061 19.2 4.8 3.7 4 0 0 4 4 4 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Arch_ATPase PF01637.13 gi|305663494|ref|YP_003859782.1| - 2.2e-55 187.8 0.3 4.4e-55 186.9 0.0 1.5 2 0 0 2 2 2 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663494|ref|YP_003859782.1| - 0.00013 22.0 0.0 0.00026 21.0 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|305663494|ref|YP_003859782.1| - 0.00014 20.8 0.0 0.00042 19.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.1 gi|305663494|ref|YP_003859782.1| - 0.005 16.4 0.0 0.011 15.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain DAP3 PF10236.4 gi|305663494|ref|YP_003859782.1| - 0.019 13.9 0.0 0.034 13.0 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_23 PF13476.1 gi|305663494|ref|YP_003859782.1| - 0.021 15.1 0.0 0.16 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.9 gi|305663494|ref|YP_003859782.1| - 0.032 13.2 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain AAA_14 PF13173.1 gi|305663494|ref|YP_003859782.1| - 0.032 14.1 0.1 0.076 12.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|305663494|ref|YP_003859782.1| - 0.04 14.7 0.6 0.15 12.9 0.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663494|ref|YP_003859782.1| - 0.041 13.4 0.0 0.069 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305663494|ref|YP_003859782.1| - 0.041 14.0 0.1 0.095 12.9 0.1 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|305663494|ref|YP_003859782.1| - 0.059 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.15 gi|305663494|ref|YP_003859782.1| - 0.067 11.8 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 G-protein alpha subunit Mg_chelatase PF01078.16 gi|305663494|ref|YP_003859782.1| - 0.076 12.1 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|305663494|ref|YP_003859782.1| - 0.081 13.0 0.0 0.19 11.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain MIF4G PF02854.14 gi|305663494|ref|YP_003859782.1| - 0.086 12.2 0.1 0.17 11.2 0.0 1.4 1 0 0 1 1 1 0 MIF4G domain RNA_helicase PF00910.17 gi|305663494|ref|YP_003859782.1| - 0.12 12.5 0.0 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 RNA helicase PIN PF01850.16 gi|305663496|ref|YP_003859784.1| - 4e-19 69.1 0.2 4.6e-19 68.9 0.2 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|305663496|ref|YP_003859784.1| - 0.032 14.8 0.0 0.041 14.5 0.0 1.2 1 0 0 1 1 1 0 PIN domain Antitoxin-MazE PF04014.13 gi|305663497|ref|YP_003859785.1| - 6.1e-11 41.8 2.9 9.6e-11 41.1 2.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE DUF104 PF01954.11 gi|305663497|ref|YP_003859785.1| - 0.0012 18.8 1.4 0.0014 18.6 0.6 1.4 1 1 0 1 1 1 1 Protein of unknown function DUF104 MraZ PF02381.13 gi|305663497|ref|YP_003859785.1| - 0.022 14.4 0.0 0.028 14.1 0.0 1.2 1 0 0 1 1 1 0 MraZ protein Lip_prot_lig_C PF10437.4 gi|305663497|ref|YP_003859785.1| - 0.036 13.7 0.1 0.044 13.4 0.1 1.2 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus NTP_transferase PF00483.18 gi|305663498|ref|YP_003859786.1| - 1.6e-32 112.7 0.0 2e-32 112.4 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|305663498|ref|YP_003859786.1| - 2.2e-16 58.5 19.7 6.8e-06 25.3 0.0 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|305663498|ref|YP_003859786.1| - 3.2e-10 40.3 0.0 4.2e-10 39.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep_2 PF14602.1 gi|305663498|ref|YP_003859786.1| - 1.1e-07 31.2 4.6 0.0057 16.1 0.0 4.0 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Ribosomal_S3Ae PF01015.13 gi|305663499|ref|YP_003859787.1| - 7.7e-67 224.4 1.4 9.4e-67 224.1 0.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Pcc1 PF09341.5 gi|305663500|ref|YP_003859788.1| - 0.00017 21.5 0.0 0.00022 21.1 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_S13_N PF08069.7 gi|305663502|ref|YP_003859790.1| - 1.2e-20 73.0 0.1 2.5e-20 72.0 0.1 1.6 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.17 gi|305663502|ref|YP_003859790.1| - 8.4e-18 63.9 0.1 1.3e-17 63.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Toxin_59 PF15537.1 gi|305663502|ref|YP_003859790.1| - 0.002 18.1 0.0 0.0032 17.5 0.0 1.2 1 0 0 1 1 1 1 Putative toxin 59 Ham1p_like PF01725.11 gi|305663503|ref|YP_003859791.1| - 1.7e-57 193.8 0.0 2e-57 193.6 0.0 1.0 1 0 0 1 1 1 1 Ham1 family RIO1 PF01163.17 gi|305663504|ref|YP_003859792.1| - 2.7e-12 46.4 0.0 4.4e-12 45.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family Pkinase PF00069.20 gi|305663504|ref|YP_003859792.1| - 1.3e-11 44.2 0.1 1.6e-11 43.8 0.1 1.1 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.18 gi|305663504|ref|YP_003859792.1| - 2.6e-09 37.1 0.0 3.8e-06 26.8 0.0 2.2 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase_Tyr PF07714.12 gi|305663504|ref|YP_003859792.1| - 3.4e-09 36.1 0.0 4.7e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.9 gi|305663504|ref|YP_003859792.1| - 1.6e-07 30.5 0.0 2.4e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family EcKinase PF02958.15 gi|305663504|ref|YP_003859792.1| - 0.00012 21.3 0.3 0.0011 18.2 0.2 1.9 1 1 1 2 2 2 1 Ecdysteroid kinase Choline_kinase PF01633.15 gi|305663504|ref|YP_003859792.1| - 0.00016 21.3 0.4 0.00031 20.3 0.2 1.5 1 1 0 1 1 1 1 Choline/ethanolamine kinase DUF1679 PF07914.6 gi|305663504|ref|YP_003859792.1| - 0.012 14.3 0.7 1.3 7.5 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1679) Peptidase_M22 PF00814.20 gi|305663505|ref|YP_003859793.1| - 4.6e-71 239.4 0.0 5.8e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family CheX PF13690.1 gi|305663505|ref|YP_003859793.1| - 0.05 13.4 0.0 0.15 11.8 0.0 1.9 1 1 0 1 1 1 0 Chemotaxis phosphatase CheX Ribosomal_S27 PF01599.14 gi|305663506|ref|YP_003859794.1| - 3.7e-07 29.8 2.7 5e-07 29.4 1.9 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.2 gi|305663506|ref|YP_003859794.1| - 0.00017 21.3 3.3 0.00021 20.9 2.3 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain GFA PF04828.9 gi|305663506|ref|YP_003859794.1| - 0.0036 17.2 0.7 0.24 11.3 0.0 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme FAM72 PF14976.1 gi|305663506|ref|YP_003859794.1| - 0.0042 16.9 0.1 0.0043 16.9 0.1 1.0 1 0 0 1 1 1 1 FAM72 protein OrfB_Zn_ribbon PF07282.6 gi|305663506|ref|YP_003859794.1| - 0.0043 16.6 1.1 0.0058 16.2 0.8 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|305663506|ref|YP_003859794.1| - 0.006 16.0 1.4 0.042 13.3 0.1 2.1 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|305663506|ref|YP_003859794.1| - 0.0065 16.2 0.2 0.0093 15.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn_ribbon_recom PF13408.1 gi|305663506|ref|YP_003859794.1| - 0.0068 16.6 2.6 0.0097 16.1 1.8 1.3 1 0 0 1 1 1 1 Recombinase zinc beta ribbon domain RNHCP PF12647.2 gi|305663506|ref|YP_003859794.1| - 0.01 15.6 0.5 0.012 15.4 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain zf-ISL3 PF14690.1 gi|305663506|ref|YP_003859794.1| - 0.013 15.5 5.4 0.17 11.9 0.2 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|305663506|ref|YP_003859794.1| - 0.016 14.8 0.3 0.025 14.2 0.2 1.4 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit C1_1 PF00130.17 gi|305663506|ref|YP_003859794.1| - 0.031 13.9 0.6 0.036 13.8 0.4 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Nudix_N_2 PF14803.1 gi|305663506|ref|YP_003859794.1| - 0.046 13.4 3.3 0.088 12.5 2.3 1.5 1 1 0 1 1 1 0 Nudix N-terminal Ribosomal_L37ae PF01780.14 gi|305663506|ref|YP_003859794.1| - 0.047 13.5 0.5 0.057 13.2 0.4 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-C4_Topoisom PF01396.14 gi|305663506|ref|YP_003859794.1| - 0.1 12.1 1.2 0.75 9.3 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|305663506|ref|YP_003859794.1| - 0.1 11.9 1.7 0.28 10.5 0.1 2.4 2 1 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|305663506|ref|YP_003859794.1| - 0.11 12.3 0.7 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|305663506|ref|YP_003859794.1| - 0.15 11.3 1.2 1.5 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|305663506|ref|YP_003859794.1| - 0.43 10.0 2.3 1.2 8.6 1.6 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain zf-H2C2_2 PF13465.1 gi|305663506|ref|YP_003859794.1| - 0.73 10.2 0.2 0.73 10.2 0.2 2.3 2 1 0 2 2 2 0 Zinc-finger double domain Rubredoxin PF00301.15 gi|305663506|ref|YP_003859794.1| - 4.9 7.1 5.6 11 6.0 0.1 2.4 3 0 0 3 3 2 0 Rubredoxin Ribosomal_S24e PF01282.14 gi|305663507|ref|YP_003859795.1| - 5.2e-20 71.0 0.1 1.1e-19 69.9 0.0 1.6 1 1 1 2 2 2 1 Ribosomal protein S24e PuR_N PF09182.5 gi|305663507|ref|YP_003859795.1| - 0.082 12.5 0.1 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal Spt4 PF06093.8 gi|305663508|ref|YP_003859796.1| - 1.6e-16 59.9 0.3 1.9e-16 59.6 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|305663508|ref|YP_003859796.1| - 0.001 18.8 0.7 0.0013 18.4 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|305663508|ref|YP_003859796.1| - 0.002 17.8 3.2 0.0033 17.0 2.2 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|305663508|ref|YP_003859796.1| - 0.0057 16.0 0.4 0.0092 15.4 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|305663508|ref|YP_003859796.1| - 0.009 15.3 0.5 0.013 14.7 0.0 1.5 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|305663508|ref|YP_003859796.1| - 0.01 15.0 1.2 0.015 14.4 0.8 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|305663508|ref|YP_003859796.1| - 0.27 11.5 0.1 0.27 11.5 0.1 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|305663508|ref|YP_003859796.1| - 0.45 10.5 2.9 6.4 6.8 2.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Tna_leader PF08053.6 gi|305663509|ref|YP_003859797.1| - 0.021 14.1 0.7 0.048 13.0 0.5 1.6 1 0 0 1 1 1 0 Tryptophanese operon leader peptide PqqD PF05402.7 gi|305663510|ref|YP_003859798.1| - 5.6e-06 26.2 0.4 6.9e-06 25.9 0.3 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) tRNA_anti-codon PF01336.20 gi|305663511|ref|YP_003859799.1| - 1.8e-06 27.6 0.1 2.5e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DUF2283 PF10049.4 gi|305663512|ref|YP_003859800.1| - 2.6e-08 33.5 1.4 3.8e-08 33.0 0.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) DUF3297 PF11730.3 gi|305663512|ref|YP_003859800.1| - 0.033 13.8 0.0 0.05 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3297) Antitoxin-MazE PF04014.13 gi|305663513|ref|YP_003859801.1| - 3.6e-06 26.5 0.3 8.2e-06 25.4 0.2 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PhoU PF01895.14 gi|305663513|ref|YP_003859801.1| - 0.00014 22.2 6.5 0.00014 22.1 0.1 2.8 3 0 0 3 3 3 1 PhoU domain NRDE-2 PF08424.5 gi|305663513|ref|YP_003859801.1| - 0.09 11.6 0.0 0.14 11.0 0.0 1.2 1 0 0 1 1 1 0 NRDE-2, necessary for RNA interference Death_2 PF14786.1 gi|305663513|ref|YP_003859801.1| - 0.15 11.8 0.4 6 6.5 0.0 2.7 2 1 0 2 2 2 0 Tube Death domain ASCH PF04266.9 gi|305663514|ref|YP_003859802.1| - 7.9e-16 58.3 0.2 1.5e-15 57.4 0.1 1.4 1 0 0 1 1 1 1 ASCH domain HGD-D PF06050.8 gi|305663514|ref|YP_003859802.1| - 0.076 11.8 0.1 0.2 10.4 0.0 1.7 1 1 1 2 2 2 0 2-hydroxyglutaryl-CoA dehydratase, D-component PRD PF00874.15 gi|305663514|ref|YP_003859802.1| - 0.11 12.6 2.5 0.4 10.8 0.2 2.5 2 1 0 2 2 2 0 PRD domain Rep_fac_C PF08542.6 gi|305663514|ref|YP_003859802.1| - 0.19 11.7 0.9 1.2 9.1 0.1 2.3 1 1 1 2 2 2 0 Replication factor C C-terminal domain KH_1 PF00013.24 gi|305663515|ref|YP_003859803.1| - 5.4e-18 64.4 4.8 2.5e-08 33.4 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|305663515|ref|YP_003859803.1| - 2.8e-11 42.7 2.2 8.8e-05 22.0 0.1 2.7 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|305663515|ref|YP_003859803.1| - 2.1e-05 23.9 1.8 0.0089 15.5 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|305663515|ref|YP_003859803.1| - 0.00014 21.3 0.4 0.013 15.1 0.0 2.6 2 0 0 2 2 2 1 KH domain SLS PF14611.1 gi|305663515|ref|YP_003859803.1| - 0.044 13.2 0.0 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial inner-membrane-bound regulator RIO1 PF01163.17 gi|305663516|ref|YP_003859804.1| - 7.3e-61 204.8 0.2 1.1e-60 204.2 0.1 1.3 1 0 0 1 1 1 1 RIO1 family Kdo PF06293.9 gi|305663516|ref|YP_003859804.1| - 0.0003 19.9 0.2 0.00095 18.2 0.1 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|305663516|ref|YP_003859804.1| - 0.0027 17.4 0.1 0.16 11.6 0.0 2.7 1 1 0 2 2 2 1 Phosphotransferase enzyme family eIF-1a PF01176.14 gi|305663517|ref|YP_003859805.1| - 3.7e-24 83.9 0.1 4.9e-24 83.5 0.1 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 NMD3 PF04981.8 gi|305663518|ref|YP_003859806.1| - 3.2e-31 108.2 0.9 3.8e-31 108.0 0.6 1.1 1 0 0 1 1 1 1 NMD3 family Lum_binding PF00677.12 gi|305663518|ref|YP_003859806.1| - 0.04 13.8 0.0 0.16 11.9 0.0 2.0 1 0 0 1 1 1 0 Lumazine binding domain DUF3104 PF11302.3 gi|305663518|ref|YP_003859806.1| - 0.29 10.5 2.0 20 4.6 0.0 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3104) Cas_CXXC_CXXC PF09706.5 gi|305663518|ref|YP_003859806.1| - 1.2 9.3 0.1 1.2 9.3 0.0 2.7 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_CXXC_CXXC) DUF424 PF04242.8 gi|305663519|ref|YP_003859807.1| - 1.3e-16 60.3 0.1 1.7e-16 60.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) MinC_N PF05209.8 gi|305663519|ref|YP_003859807.1| - 0.0062 16.2 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 Septum formation inhibitor MinC, N-terminal domain eIF-5_eIF-2B PF01873.12 gi|305663520|ref|YP_003859808.1| - 3.5e-27 94.5 0.1 4.4e-27 94.2 0.1 1.1 1 0 0 1 1 1 1 Domain found in IF2B/IF5 DUF2387 PF09526.5 gi|305663520|ref|YP_003859808.1| - 0.0021 17.9 0.1 0.0035 17.2 0.1 1.3 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) zinc_ribbon_6 PF14599.1 gi|305663520|ref|YP_003859808.1| - 0.025 14.3 1.1 0.14 11.9 0.1 2.3 2 0 0 2 2 2 0 Zinc-ribbon Lar_restr_allev PF14354.1 gi|305663520|ref|YP_003859808.1| - 0.03 14.6 0.6 0.069 13.4 0.4 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-Sec23_Sec24 PF04810.10 gi|305663520|ref|YP_003859808.1| - 0.2 11.2 2.3 7.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Radical_SAM PF04055.16 gi|305663521|ref|YP_003859809.1| - 4.6e-23 82.1 0.3 1.2e-22 80.8 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|305663521|ref|YP_003859809.1| - 1e-21 76.5 0.1 2e-21 75.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|305663521|ref|YP_003859809.1| - 4.1e-06 26.4 0.0 8.6e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 TRAM domain DUF3227 PF11537.3 gi|305663522|ref|YP_003859810.1| - 0.0076 16.3 0.0 0.039 14.0 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF3227) COX6A PF02046.10 gi|305663523|ref|YP_003859811.1| - 0.051 13.5 0.1 0.052 13.4 0.0 1.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit VIa RskA PF10099.4 gi|305663523|ref|YP_003859811.1| - 0.13 11.9 0.2 0.13 11.9 0.1 1.1 1 0 0 1 1 1 0 Anti-sigma-K factor rskA OCD_Mu_crystall PF02423.10 gi|305663525|ref|YP_003859813.1| - 6.3e-110 366.8 0.0 7.1e-110 366.6 0.0 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|305663525|ref|YP_003859813.1| - 2.7e-05 24.2 0.0 4.5e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|305663525|ref|YP_003859813.1| - 0.0061 17.0 0.0 0.011 16.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GDPD PF03009.12 gi|305663526|ref|YP_003859814.1| - 9.3e-41 140.0 0.1 1.7e-40 139.1 0.0 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|305663526|ref|YP_003859814.1| - 6.5e-06 26.1 0.6 0.00084 19.4 0.1 2.5 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family AbiH PF14253.1 gi|305663526|ref|YP_003859814.1| - 0.094 12.3 0.5 0.092 12.3 0.3 1.3 1 1 0 1 1 1 0 Bacteriophage abortive infection AbiH Thymopoietin PF08198.6 gi|305663527|ref|YP_003859815.1| - 0.029 13.9 0.0 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 Thymopoietin protein AsnC_trans_reg PF01037.16 gi|305663528|ref|YP_003859816.1| - 3e-15 55.6 1.5 3.3e-15 55.5 1.1 1.0 1 0 0 1 1 1 1 AsnC family GYD PF08734.6 gi|305663528|ref|YP_003859816.1| - 0.0073 16.0 0.0 0.0078 15.9 0.0 1.2 1 0 0 1 1 1 1 GYD domain POTRA_1 PF08478.5 gi|305663528|ref|YP_003859816.1| - 0.0086 16.0 0.0 0.25 11.4 0.0 2.1 2 0 0 2 2 2 1 POTRA domain, FtsQ-type NapD PF03927.8 gi|305663528|ref|YP_003859816.1| - 0.013 15.3 1.4 0.016 15.0 1.0 1.1 1 0 0 1 1 1 0 NapD protein HMA PF00403.21 gi|305663528|ref|YP_003859816.1| - 0.095 12.8 0.1 0.14 12.3 0.1 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain zf-Tim10_DDP PF02953.10 gi|305663529|ref|YP_003859817.1| - 0.0025 17.0 0.7 0.012 14.8 0.7 1.7 1 1 1 2 2 2 2 Tim10/DDP family zinc finger Chitin_bind_1 PF00187.14 gi|305663529|ref|YP_003859817.1| - 0.029 14.3 0.5 0.04 13.9 0.4 1.3 1 0 0 1 1 1 0 Chitin recognition protein Crust_neurohorm PF01147.12 gi|305663529|ref|YP_003859817.1| - 0.066 12.5 0.2 0.089 12.1 0.1 1.2 1 0 0 1 1 1 0 Crustacean CHH/MIH/GIH neurohormone family PAN_3 PF08277.7 gi|305663529|ref|YP_003859817.1| - 0.31 10.6 2.2 2.1 8.0 0.2 2.0 1 1 1 2 2 2 0 PAN-like domain AstE_AspA PF04952.9 gi|305663530|ref|YP_003859818.1| - 9.3e-08 31.2 0.0 1.1e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family RnfC_N PF13375.1 gi|305663530|ref|YP_003859818.1| - 0.062 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain NusG PF02357.14 gi|305663530|ref|YP_003859818.1| - 0.067 13.4 0.5 0.7 10.1 0.1 2.3 1 1 1 2 2 2 0 Transcription termination factor nusG UPF0047 PF01894.12 gi|305663531|ref|YP_003859819.1| - 1.4e-36 124.8 0.1 1.6e-36 124.6 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 HTH_7 PF02796.10 gi|305663532|ref|YP_003859820.1| - 9e-06 25.4 0.1 3e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase HTH_23 PF13384.1 gi|305663532|ref|YP_003859820.1| - 8.6e-05 22.0 0.2 0.00018 21.0 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|305663532|ref|YP_003859820.1| - 0.0034 17.4 0.1 0.0054 16.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_Tnp_1 PF01527.15 gi|305663532|ref|YP_003859820.1| - 0.0044 16.9 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 Transposase HTH_20 PF12840.2 gi|305663532|ref|YP_003859820.1| - 0.0046 16.7 0.4 0.011 15.5 0.3 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.1 gi|305663532|ref|YP_003859820.1| - 0.0094 15.9 0.1 0.0094 15.9 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|305663532|ref|YP_003859820.1| - 0.2 11.5 0.1 0.2 11.5 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix ATP_bind_4 PF01902.12 gi|305663534|ref|YP_003859822.1| - 5.5e-47 159.9 0.0 7e-47 159.5 0.0 1.0 1 0 0 1 1 1 1 ATP-binding region ThiI PF02568.9 gi|305663534|ref|YP_003859822.1| - 0.026 13.9 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|305663534|ref|YP_003859822.1| - 0.029 13.6 0.0 0.13 11.4 0.0 2.1 3 0 0 3 3 3 0 Queuosine biosynthesis protein QueC PSII_Pbs27 PF13326.1 gi|305663535|ref|YP_003859823.1| - 0.078 12.9 0.1 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Photosystem II Pbs27 DNA_primase_S PF01896.14 gi|305663535|ref|YP_003859823.1| - 0.14 11.9 0.1 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Eukaryotic and archaeal DNA primase small subunit DUF3267 PF11667.3 gi|305663536|ref|YP_003859824.1| - 4e-06 27.0 10.2 4e-06 27.0 7.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3267) InaF-motif PF15018.1 gi|305663536|ref|YP_003859824.1| - 0.0023 17.3 2.3 0.0055 16.1 1.6 1.7 1 0 0 1 1 1 1 TRP-interacting helix YqhR PF11085.3 gi|305663536|ref|YP_003859824.1| - 1.8 8.0 6.4 2.8 7.4 0.3 2.1 1 1 1 2 2 2 0 Conserved membrane protein YqhR DUF46 PF01864.12 gi|305663537|ref|YP_003859825.1| - 5e-49 166.5 10.8 1e-48 165.4 7.5 1.5 1 1 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|305663537|ref|YP_003859825.1| - 9.9e-09 35.2 1.0 9.9e-09 35.2 0.7 2.2 2 0 0 2 2 2 1 Cytidylyltransferase family DUF3816 PF12822.2 gi|305663537|ref|YP_003859825.1| - 0.46 10.3 16.3 0.015 15.1 6.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3816) POR PF01558.13 gi|305663538|ref|YP_003859826.1| - 4.6e-41 140.5 0.2 5.4e-41 140.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Fer4 PF00037.22 gi|305663539|ref|YP_003859827.1| - 1.5e-15 56.0 16.5 1.1e-08 34.3 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|305663539|ref|YP_003859827.1| - 1.1e-11 44.4 5.6 1.5e-11 43.9 3.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|305663539|ref|YP_003859827.1| - 3.9e-11 43.1 6.5 5.9e-11 42.5 4.5 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305663539|ref|YP_003859827.1| - 5.4e-11 41.8 13.2 1.9e-06 27.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|305663539|ref|YP_003859827.1| - 7e-11 41.3 11.3 3.5e-05 23.4 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|305663539|ref|YP_003859827.1| - 1.7e-10 40.5 8.6 2.4e-05 24.0 0.5 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|305663539|ref|YP_003859827.1| - 1.3e-08 35.4 7.1 0.00026 21.6 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_8 PF13183.1 gi|305663539|ref|YP_003859827.1| - 4.7e-08 32.9 5.5 6.1e-08 32.5 3.8 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305663539|ref|YP_003859827.1| - 8.9e-08 32.2 17.7 6.9e-07 29.4 6.4 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|305663539|ref|YP_003859827.1| - 1.2e-05 25.6 4.2 0.0066 16.8 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|305663539|ref|YP_003859827.1| - 1.9e-05 25.1 7.1 0.0079 16.7 0.8 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|305663539|ref|YP_003859827.1| - 5.5e-05 23.1 11.7 0.041 14.2 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|305663539|ref|YP_003859827.1| - 0.00044 20.5 8.3 0.0015 18.8 5.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|305663539|ref|YP_003859827.1| - 0.0014 18.9 12.2 0.033 14.5 1.8 2.4 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|305663539|ref|YP_003859827.1| - 0.0036 17.7 5.7 0.0036 17.7 4.0 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain POR_N PF01855.14 gi|305663540|ref|YP_003859828.1| - 6.6e-71 238.4 3.9 8.3e-71 238.1 2.7 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Transketolase_C PF02780.15 gi|305663540|ref|YP_003859828.1| - 1.7e-07 31.2 0.0 5.5e-07 29.5 0.0 2.1 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_C PF02775.16 gi|305663541|ref|YP_003859829.1| - 7.2e-25 87.3 0.1 1.2e-24 86.6 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Molybdopterin PF00384.17 gi|305663542|ref|YP_003859830.1| - 1.4e-45 155.8 0.0 1.6e-29 102.8 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|305663542|ref|YP_003859830.1| - 1.3e-16 60.3 0.0 2.6e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|305663542|ref|YP_003859830.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain SMC_N PF02463.14 gi|305663543|ref|YP_003859831.1| - 5.7e-21 74.7 4.0 9e-19 67.5 2.8 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305663543|ref|YP_003859831.1| - 4.2e-18 66.3 55.6 7.7e-17 62.2 9.2 4.1 1 1 2 3 3 2 1 AAA domain AAA_13 PF13166.1 gi|305663543|ref|YP_003859831.1| - 7.7e-13 47.8 43.2 3.6e-09 35.6 13.1 3.9 3 1 1 4 4 4 3 AAA domain AAA_21 PF13304.1 gi|305663543|ref|YP_003859831.1| - 6.3e-10 39.4 43.2 0.00076 19.5 2.8 4.2 1 1 1 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|305663543|ref|YP_003859831.1| - 2.5e-07 30.5 0.1 6.4e-07 29.2 0.0 1.7 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit GAS PF13851.1 gi|305663543|ref|YP_003859831.1| - 5.3e-07 29.0 50.9 0.0025 17.0 2.6 4.9 4 2 1 5 5 5 3 Growth-arrest specific micro-tubule binding ABC_tran PF00005.22 gi|305663543|ref|YP_003859831.1| - 1.1e-06 28.9 6.4 0.0056 16.9 0.1 4.2 2 2 0 3 3 3 2 ABC transporter Baculo_PEP_C PF04513.7 gi|305663543|ref|YP_003859831.1| - 1.4e-06 28.1 23.1 0.25 11.1 0.2 5.6 2 2 2 5 5 5 3 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|305663543|ref|YP_003859831.1| - 3e-06 26.9 12.7 0.31 10.9 0.0 5.5 4 1 1 5 5 5 3 Bacterial protein of unknown function (DUF948) Rad50_zn_hook PF04423.9 gi|305663543|ref|YP_003859831.1| - 1.8e-05 24.1 0.8 1.8e-05 24.1 0.5 6.8 5 1 1 6 6 6 1 Rad50 zinc hook motif AAA_29 PF13555.1 gi|305663543|ref|YP_003859831.1| - 3e-05 23.4 0.0 5.9e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|305663543|ref|YP_003859831.1| - 0.00037 20.1 48.0 0.0013 18.3 3.9 5.1 3 1 0 4 4 4 2 IncA protein AAA_25 PF13481.1 gi|305663543|ref|YP_003859831.1| - 0.00045 19.6 0.1 0.089 12.1 0.0 3.5 3 1 0 3 3 2 1 AAA domain Reo_sigmaC PF04582.7 gi|305663543|ref|YP_003859831.1| - 0.00074 18.7 7.5 0.087 11.9 0.7 3.7 2 2 2 4 4 4 1 Reovirus sigma C capsid protein MCPsignal PF00015.16 gi|305663543|ref|YP_003859831.1| - 0.0025 17.3 7.6 1.4 8.4 0.0 4.4 3 1 1 4 4 4 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF4164 PF13747.1 gi|305663543|ref|YP_003859831.1| - 0.0026 17.8 2.0 0.0026 17.8 1.4 5.6 4 1 0 5 5 5 1 Domain of unknown function (DUF4164) Suppressor_APC PF11414.3 gi|305663543|ref|YP_003859831.1| - 0.0029 17.3 12.6 0.35 10.6 0.1 3.8 3 0 0 3 3 3 2 Adenomatous polyposis coli tumour suppressor protein MutS_III PF05192.13 gi|305663543|ref|YP_003859831.1| - 0.003 17.3 2.2 0.003 17.3 1.5 3.1 1 1 1 2 2 2 1 MutS domain III COG5 PF10392.4 gi|305663543|ref|YP_003859831.1| - 0.0044 16.9 0.8 0.0044 16.9 0.5 5.1 3 2 2 6 6 6 1 Golgi transport complex subunit 5 Syntaxin-6_N PF09177.6 gi|305663543|ref|YP_003859831.1| - 0.0049 17.2 31.0 0.61 10.5 0.2 5.8 3 2 2 5 5 5 2 Syntaxin 6, N-terminal V-SNARE PF05008.10 gi|305663543|ref|YP_003859831.1| - 0.0052 16.9 3.0 0.0052 16.9 2.1 6.4 6 1 0 7 7 6 2 Vesicle transport v-SNARE protein N-terminus EzrA PF06160.7 gi|305663543|ref|YP_003859831.1| - 0.0089 14.2 40.2 0.038 12.1 2.7 4.1 2 2 2 4 4 4 3 Septation ring formation regulator, EzrA Bacillus_HBL PF05791.6 gi|305663543|ref|YP_003859831.1| - 0.017 14.4 24.2 0.94 8.8 1.3 5.0 4 1 0 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) DUF2524 PF10732.4 gi|305663543|ref|YP_003859831.1| - 0.029 14.4 1.2 0.029 14.4 0.8 3.3 4 0 0 4 4 2 0 Protein of unknown function (DUF2524) Arb2 PF09757.4 gi|305663543|ref|YP_003859831.1| - 0.031 13.7 0.2 0.067 12.6 0.2 1.5 1 0 0 1 1 1 0 Arb2 domain Miro PF08477.8 gi|305663543|ref|YP_003859831.1| - 0.061 13.8 0.2 0.65 10.5 0.0 2.9 2 0 0 2 2 2 0 Miro-like protein BLOC1_2 PF10046.4 gi|305663543|ref|YP_003859831.1| - 0.085 13.0 40.9 0.12 12.4 0.9 6.2 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RGCC PF15151.1 gi|305663543|ref|YP_003859831.1| - 0.097 13.1 4.4 0.46 10.9 0.7 3.2 1 1 1 2 2 2 0 Response gene to complement 32 protein family T4SS PF07996.6 gi|305663543|ref|YP_003859831.1| - 0.1 12.4 6.5 0.94 9.3 0.3 3.1 2 1 0 2 2 2 0 Type IV secretion system proteins DUF1664 PF07889.7 gi|305663543|ref|YP_003859831.1| - 0.11 12.3 31.5 3.7 7.3 0.6 6.1 3 1 2 6 6 6 0 Protein of unknown function (DUF1664) IFT57 PF10498.4 gi|305663543|ref|YP_003859831.1| - 0.21 10.3 33.2 0.43 9.2 0.6 4.2 3 1 1 4 4 4 0 Intra-flagellar transport protein 57 DUF3450 PF11932.3 gi|305663543|ref|YP_003859831.1| - 0.23 10.6 21.1 2.4 7.3 0.3 5.3 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) NPV_P10 PF05531.7 gi|305663543|ref|YP_003859831.1| - 0.27 11.5 24.7 5.7 7.2 1.9 6.7 4 2 2 6 6 5 0 Nucleopolyhedrovirus P10 protein FliD_N PF02465.13 gi|305663543|ref|YP_003859831.1| - 0.7 10.2 10.1 18 5.7 1.3 5.3 4 1 0 4 4 4 0 Flagellar hook-associated protein 2 N-terminus DUF2203 PF09969.4 gi|305663543|ref|YP_003859831.1| - 1.5 9.0 21.8 13 6.0 0.1 5.5 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) Occludin_ELL PF07303.8 gi|305663543|ref|YP_003859831.1| - 1.8 9.3 29.6 4.9 7.9 2.0 5.9 3 3 0 4 4 4 0 Occludin homology domain DUF972 PF06156.8 gi|305663543|ref|YP_003859831.1| - 1.9 8.8 35.5 0.039 14.3 1.3 5.4 2 2 2 4 4 3 0 Protein of unknown function (DUF972) AAA_16 PF13191.1 gi|305663543|ref|YP_003859831.1| - 2 8.3 11.0 0.82 9.6 1.2 4.2 3 2 0 3 3 2 0 AAA ATPase domain Synaptobrevin PF00957.16 gi|305663543|ref|YP_003859831.1| - 2.3 7.8 7.3 3.4 7.3 0.0 3.8 3 0 0 3 3 3 0 Synaptobrevin FlxA PF14282.1 gi|305663543|ref|YP_003859831.1| - 6.5 6.7 21.5 2 8.3 0.2 5.7 5 1 1 6 6 6 0 FlxA-like protein DUF2400 PF09674.5 gi|305663543|ref|YP_003859831.1| - 8.1 6.0 15.0 6.4 6.4 0.4 4.1 2 2 0 3 3 3 0 Protein of unknown function (DUF2400) DUF1212 PF06738.7 gi|305663543|ref|YP_003859831.1| - 8.1 5.8 6.5 18 4.6 0.0 3.9 5 1 1 6 6 3 0 Protein of unknown function (DUF1212) COG2 PF06148.6 gi|305663543|ref|YP_003859831.1| - 9.2 6.1 32.4 5.2 6.9 2.5 4.9 3 1 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Metallophos_2 PF12850.2 gi|305663544|ref|YP_003859832.1| - 4.3e-12 46.1 0.0 6.4e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305663544|ref|YP_003859832.1| - 8.9e-11 41.5 0.0 1.3e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase ComX PF05952.7 gi|305663544|ref|YP_003859832.1| - 0.037 13.5 0.8 0.14 11.6 0.1 2.4 3 0 0 3 3 3 0 Bacillus competence pheromone ComX DUF87 PF01935.12 gi|305663545|ref|YP_003859833.1| - 2.1e-30 106.2 1.6 2.1e-30 106.2 1.1 1.5 2 0 0 2 2 2 1 Domain of unknown function DUF87 AAA_10 PF12846.2 gi|305663545|ref|YP_003859833.1| - 5.8e-23 81.7 0.3 1e-22 80.9 0.2 1.4 1 0 0 1 1 1 1 AAA-like domain DUF853 PF05872.7 gi|305663545|ref|YP_003859833.1| - 4.9e-11 41.6 0.0 0.0002 19.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.4 gi|305663545|ref|YP_003859833.1| - 1.1e-07 30.8 0.5 4.2e-07 28.9 0.0 2.2 2 2 1 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.13 gi|305663545|ref|YP_003859833.1| - 0.00023 20.7 1.1 0.017 14.6 0.0 2.9 2 1 0 2 2 2 1 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|305663545|ref|YP_003859833.1| - 0.04 14.2 0.6 0.14 12.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|305663545|ref|YP_003859833.1| - 0.04 14.2 0.7 0.11 12.7 0.5 1.8 1 1 0 1 1 1 0 ABC transporter Zot PF05707.7 gi|305663545|ref|YP_003859833.1| - 0.05 13.0 0.2 4.2 6.7 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_16 PF13191.1 gi|305663545|ref|YP_003859833.1| - 0.06 13.3 0.0 0.21 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|305663545|ref|YP_003859833.1| - 0.066 12.0 0.3 0.12 11.2 0.2 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_29 PF13555.1 gi|305663545|ref|YP_003859833.1| - 0.092 12.2 0.3 0.18 11.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|305663545|ref|YP_003859833.1| - 0.1 13.4 0.1 0.28 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain DUF340 PF03956.8 gi|305663546|ref|YP_003859834.1| - 2.7e-40 137.7 27.4 3.1e-40 137.5 19.0 1.0 1 0 0 1 1 1 1 Membrane protein of unknown function (DUF340) DUF340 PF03956.8 gi|305663547|ref|YP_003859835.1| - 0.17 11.1 6.4 0.24 10.6 4.5 1.3 1 0 0 1 1 1 0 Membrane protein of unknown function (DUF340) GWT1 PF06423.7 gi|305663547|ref|YP_003859835.1| - 0.29 11.2 3.5 0.23 11.5 1.2 1.6 1 1 0 1 1 1 0 GWT1 FtsX PF02687.16 gi|305663547|ref|YP_003859835.1| - 4.1 7.1 12.3 1.3e+02 2.3 8.5 2.1 1 1 0 1 1 1 0 FtsX-like permease family DUF3981 PF13139.1 gi|305663547|ref|YP_003859835.1| - 7.5 6.5 8.1 3.1 7.8 3.5 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF3981) Reprolysin_4 PF13583.1 gi|305663548|ref|YP_003859836.1| - 0.034 13.6 0.4 0.067 12.7 0.0 1.6 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|305663548|ref|YP_003859836.1| - 0.038 14.0 0.0 0.073 13.1 0.0 1.4 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|305663548|ref|YP_003859836.1| - 0.051 14.1 0.2 0.12 12.8 0.1 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|305663548|ref|YP_003859836.1| - 0.089 12.5 0.1 0.15 11.7 0.1 1.4 1 0 0 1 1 1 0 Matrixin Peptidase_M43 PF05572.8 gi|305663548|ref|YP_003859836.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_5 PF13688.1 gi|305663548|ref|YP_003859836.1| - 0.2 11.5 0.6 0.58 10.0 0.0 1.9 2 0 0 2 2 2 0 Metallo-peptidase family M12 Oxidored_q1_N PF00662.15 gi|305663550|ref|YP_003859838.1| - 0.063 12.8 0.1 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Antitoxin-MazE PF04014.13 gi|305663552|ref|YP_003859840.1| - 1.1e-14 53.7 2.5 1.7e-14 53.1 1.7 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE eIF-1a PF01176.14 gi|305663552|ref|YP_003859840.1| - 0.0084 15.5 0.2 0.01 15.2 0.2 1.3 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1905 PF08922.6 gi|305663552|ref|YP_003859840.1| - 0.029 13.9 0.1 0.044 13.3 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) AbrB-like PF14250.1 gi|305663552|ref|YP_003859840.1| - 0.066 13.1 0.1 0.089 12.7 0.0 1.1 1 0 0 1 1 1 0 AbrB-like transcriptional regulator CDC48_N PF02359.13 gi|305663552|ref|YP_003859840.1| - 0.12 12.3 0.1 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain PIN PF01850.16 gi|305663553|ref|YP_003859841.1| - 2.7e-09 37.4 0.1 3.5e-09 37.0 0.1 1.1 1 0 0 1 1 1 1 PIN domain Peptidase_M24 PF00557.19 gi|305663555|ref|YP_003859843.1| - 3.3e-41 141.1 0.0 4.7e-41 140.6 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF973 PF06157.6 gi|305663556|ref|YP_003859844.1| - 3.1e-12 46.0 24.4 3.6e-12 45.8 16.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF973) Claudin_2 PF13903.1 gi|305663556|ref|YP_003859844.1| - 0.00021 21.0 17.3 0.0045 16.6 7.9 2.2 1 1 1 2 2 2 2 PMP-22/EMP/MP20/Claudin tight junction PMP22_Claudin PF00822.15 gi|305663556|ref|YP_003859844.1| - 4.9 6.7 17.8 10 5.7 3.0 2.3 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin family TMEM206 PF15122.1 gi|305663560|ref|YP_003859848.1| - 0.093 11.6 0.0 0.097 11.5 0.0 1.0 1 0 0 1 1 1 0 TMEM206 protein family tRNA-synt_2c PF01411.14 gi|305663561|ref|YP_003859849.1| - 1.2e-102 344.0 0.0 2e-102 343.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|305663561|ref|YP_003859849.1| - 1e-12 47.6 1.6 2.5e-12 46.4 0.2 2.3 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.10 gi|305663561|ref|YP_003859849.1| - 0.0015 17.6 0.0 0.0032 16.6 0.0 1.5 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit Glypican PF01153.14 gi|305663561|ref|YP_003859849.1| - 0.057 12.0 0.2 0.089 11.3 0.2 1.2 1 0 0 1 1 1 0 Glypican Ribosomal_60s PF00428.14 gi|305663562|ref|YP_003859850.1| - 3.1e-15 56.3 9.1 3.6e-15 56.1 6.3 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein TFIID_30kDa PF03540.8 gi|305663562|ref|YP_003859850.1| - 0.015 15.1 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit Lactamase_B_2 PF12706.2 gi|305663563|ref|YP_003859851.1| - 9.1e-07 28.6 0.3 1.8e-06 27.6 0.2 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|305663563|ref|YP_003859851.1| - 0.0047 16.7 0.0 0.015 15.0 0.0 1.9 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B PF00753.22 gi|305663563|ref|YP_003859851.1| - 0.35 10.4 8.5 27 4.3 0.0 2.8 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily Radical_SAM PF04055.16 gi|305663564|ref|YP_003859852.1| - 7.3e-20 71.7 0.0 1.6e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|305663564|ref|YP_003859852.1| - 2.3e-19 69.2 0.0 4e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Wyosine base formation MipZ PF09140.6 gi|305663564|ref|YP_003859852.1| - 0.058 12.4 0.0 0.094 11.7 0.0 1.2 1 0 0 1 1 1 0 ATPase MipZ DHH PF01368.15 gi|305663565|ref|YP_003859853.1| - 3.5e-05 23.4 0.2 6.3e-05 22.6 0.1 1.5 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|305663565|ref|YP_003859853.1| - 5.7e-05 22.7 0.0 0.0011 18.6 0.0 2.5 2 0 0 2 2 2 1 DHHA1 domain Sporozoite_P67 PF05642.6 gi|305663565|ref|YP_003859853.1| - 0.13 10.1 0.0 0.18 9.6 0.0 1.2 1 0 0 1 1 1 0 Sporozoite P67 surface antigen DUF91 PF01939.11 gi|305663566|ref|YP_003859854.1| - 1.2e-48 165.2 0.2 1.5e-48 164.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|305663566|ref|YP_003859854.1| - 0.00073 19.4 0.2 0.0011 18.9 0.2 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|305663566|ref|YP_003859854.1| - 0.0078 16.1 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function DUF83 Redoxin PF08534.5 gi|305663566|ref|YP_003859854.1| - 0.016 14.7 0.1 0.2 11.1 0.0 2.4 3 0 0 3 3 3 0 Redoxin DUF1703 PF08011.6 gi|305663566|ref|YP_003859854.1| - 0.047 13.4 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1703) 4HBT PF03061.17 gi|305663567|ref|YP_003859855.1| - 0.0087 16.1 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily Metallophos_2 PF12850.2 gi|305663568|ref|YP_003859856.1| - 3.4e-18 65.9 0.0 4.6e-18 65.5 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|305663568|ref|YP_003859856.1| - 5.7e-18 64.9 0.1 7.2e-12 45.0 0.0 2.6 3 0 0 3 3 3 2 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.23 gi|305663568|ref|YP_003859856.1| - 5.3e-14 52.0 2.6 8.3e-14 51.4 1.8 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3785 PF12653.2 gi|305663568|ref|YP_003859856.1| - 0.041 13.7 0.2 0.07 12.9 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3785) SIR2_2 PF13289.1 gi|305663568|ref|YP_003859856.1| - 0.052 13.4 2.0 0.21 11.4 1.4 2.1 1 1 0 1 1 1 0 SIR2-like domain NPR2 PF06218.6 gi|305663569|ref|YP_003859857.1| - 0.058 12.0 2.0 0.054 12.2 1.4 1.1 1 0 0 1 1 1 0 Nitrogen permease regulator 2 Helicase_RecD PF05127.9 gi|305663570|ref|YP_003859858.1| - 2.7e-54 183.4 0.0 4.4e-54 182.7 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.1 gi|305663570|ref|YP_003859858.1| - 2.9e-48 163.8 0.0 1.9e-47 161.1 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 DUF1726 PF08351.6 gi|305663570|ref|YP_003859858.1| - 9.3e-25 86.1 0.0 3.2e-24 84.4 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.1 gi|305663570|ref|YP_003859858.1| - 4e-09 36.4 0.0 3e-08 33.7 0.0 2.6 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|305663570|ref|YP_003859858.1| - 6.6e-09 35.6 0.1 3.2e-08 33.4 0.1 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family tRNA_bind_2 PF13725.1 gi|305663570|ref|YP_003859858.1| - 0.00055 20.0 0.0 0.0017 18.3 0.0 1.8 2 0 0 2 2 2 1 Possible tRNA binding domain Rhodanese PF00581.15 gi|305663570|ref|YP_003859858.1| - 0.04 14.2 0.0 0.29 11.5 0.0 2.3 2 0 0 2 2 2 0 Rhodanese-like domain Acetyltransf_10 PF13673.1 gi|305663570|ref|YP_003859858.1| - 0.087 12.9 0.0 0.23 11.6 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain AAA PF00004.24 gi|305663571|ref|YP_003859859.1| - 6.4e-100 330.5 0.0 2.6e-49 166.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|305663571|ref|YP_003859859.1| - 2.3e-26 91.5 0.4 6.9e-26 90.0 0.3 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_16 PF13191.1 gi|305663571|ref|YP_003859859.1| - 5.7e-15 55.7 0.0 2e-06 27.9 0.0 2.8 2 0 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|305663571|ref|YP_003859859.1| - 7.8e-15 54.5 0.0 9.5e-08 31.3 0.0 2.6 2 1 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|305663571|ref|YP_003859859.1| - 2.3e-14 53.6 0.6 7.5e-06 26.1 0.1 4.5 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|305663571|ref|YP_003859859.1| - 6.9e-14 52.1 0.0 1.2e-05 25.3 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) CDC48_2 PF02933.12 gi|305663571|ref|YP_003859859.1| - 4.4e-13 48.6 0.1 3.2e-12 45.8 0.0 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_17 PF13207.1 gi|305663571|ref|YP_003859859.1| - 1.1e-12 48.8 0.0 3.6e-06 27.7 0.0 3.3 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|305663571|ref|YP_003859859.1| - 1.4e-12 47.5 0.2 0.00013 21.7 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|305663571|ref|YP_003859859.1| - 1.7e-12 47.3 0.0 5.1e-06 26.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|305663571|ref|YP_003859859.1| - 1.9e-10 40.1 0.0 7.4e-05 21.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin AAA_33 PF13671.1 gi|305663571|ref|YP_003859859.1| - 2.9e-10 40.2 0.0 5.6e-05 23.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|305663571|ref|YP_003859859.1| - 5.2e-09 35.3 0.0 0.0025 16.6 0.0 2.6 2 0 0 2 2 2 2 TIP49 C-terminus Arch_ATPase PF01637.13 gi|305663571|ref|YP_003859859.1| - 6.3e-09 35.8 0.1 0.00056 19.6 0.0 3.7 2 2 2 4 4 4 2 Archaeal ATPase AAA_25 PF13481.1 gi|305663571|ref|YP_003859859.1| - 8.2e-09 35.1 0.8 0.011 15.1 0.1 3.8 3 1 0 3 3 3 2 AAA domain AAA_18 PF13238.1 gi|305663571|ref|YP_003859859.1| - 1.1e-08 35.4 0.0 0.00069 19.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|305663571|ref|YP_003859859.1| - 8.9e-08 31.7 0.2 0.0065 15.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|305663571|ref|YP_003859859.1| - 9.7e-08 32.1 0.0 0.0059 16.7 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|305663571|ref|YP_003859859.1| - 2.2e-07 30.9 0.0 0.002 18.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|305663571|ref|YP_003859859.1| - 3.3e-07 29.6 0.7 0.014 14.5 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|305663571|ref|YP_003859859.1| - 1.3e-06 28.1 0.7 0.16 11.6 0.0 4.2 4 0 0 4 4 4 2 NACHT domain AAA_24 PF13479.1 gi|305663571|ref|YP_003859859.1| - 2.7e-06 27.1 0.1 0.067 12.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|305663571|ref|YP_003859859.1| - 2.8e-06 26.9 0.5 0.11 12.3 0.0 3.1 2 0 0 2 2 2 2 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|305663571|ref|YP_003859859.1| - 3.5e-06 27.1 0.0 0.035 14.1 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain KaiC PF06745.8 gi|305663571|ref|YP_003859859.1| - 1e-05 24.7 0.1 0.16 11.0 0.0 3.3 3 0 0 3 3 3 2 KaiC ABC_tran PF00005.22 gi|305663571|ref|YP_003859859.1| - 4.7e-05 23.7 0.0 0.16 12.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Viral_helicase1 PF01443.13 gi|305663571|ref|YP_003859859.1| - 7.4e-05 22.3 0.0 0.2 11.1 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Rad17 PF03215.10 gi|305663571|ref|YP_003859859.1| - 8.7e-05 21.3 0.0 0.15 10.7 0.0 2.5 2 1 1 3 3 3 2 Rad17 cell cycle checkpoint protein Vps4_C PF09336.5 gi|305663571|ref|YP_003859859.1| - 0.00015 21.5 0.0 0.056 13.3 0.0 2.8 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain DUF815 PF05673.8 gi|305663571|ref|YP_003859859.1| - 0.00016 20.7 0.0 0.43 9.4 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|305663571|ref|YP_003859859.1| - 0.00016 21.1 0.1 0.92 8.9 0.0 3.5 2 2 0 2 2 2 1 Sigma-54 interaction domain SKI PF01202.17 gi|305663571|ref|YP_003859859.1| - 0.00017 21.5 0.0 0.36 10.6 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase NB-ARC PF00931.17 gi|305663571|ref|YP_003859859.1| - 0.00033 19.5 0.0 0.57 8.9 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Parvo_NS1 PF01057.12 gi|305663571|ref|YP_003859859.1| - 0.00054 18.9 0.2 0.17 10.6 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 PhoH PF02562.11 gi|305663571|ref|YP_003859859.1| - 0.00055 19.2 0.6 0.7 9.0 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein Bac_DnaA PF00308.13 gi|305663571|ref|YP_003859859.1| - 0.0009 18.9 0.0 0.15 11.6 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_3 PF07726.6 gi|305663571|ref|YP_003859859.1| - 0.0013 18.3 0.0 0.77 9.3 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|305663571|ref|YP_003859859.1| - 0.0013 18.3 0.0 0.89 9.1 0.0 2.6 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 ATP-synt_ab PF00006.20 gi|305663571|ref|YP_003859859.1| - 0.0037 16.7 0.0 2.6 7.5 0.0 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Molydop_binding PF01568.16 gi|305663571|ref|YP_003859859.1| - 0.0051 16.6 0.1 0.14 11.9 0.0 2.6 2 1 1 3 3 2 1 Molydopterin dinucleotide binding domain Antitoxin-MazE PF04014.13 gi|305663571|ref|YP_003859859.1| - 0.0052 16.4 0.4 0.14 11.9 0.1 2.7 2 0 0 2 2 2 1 Antidote-toxin recognition MazE PduV-EutP PF10662.4 gi|305663571|ref|YP_003859859.1| - 0.0056 16.1 0.0 0.74 9.2 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.10 gi|305663571|ref|YP_003859859.1| - 0.01 15.5 1.5 30 4.2 0.0 4.2 3 2 2 5 5 3 0 NTPase KAP_NTPase PF07693.9 gi|305663571|ref|YP_003859859.1| - 0.013 14.5 0.0 7.4 5.4 0.0 3.1 3 0 0 3 3 3 0 KAP family P-loop domain Cytidylate_kin2 PF13189.1 gi|305663571|ref|YP_003859859.1| - 0.015 15.2 0.0 0.67 9.8 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family T2SE PF00437.15 gi|305663571|ref|YP_003859859.1| - 0.024 13.5 0.0 2.8 6.7 0.0 2.5 2 0 0 2 2 2 0 Type II/IV secretion system protein DAP3 PF10236.4 gi|305663571|ref|YP_003859859.1| - 0.031 13.2 0.0 4.8 6.0 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_10 PF12846.2 gi|305663571|ref|YP_003859859.1| - 0.048 13.1 2.3 1.7 8.0 0.0 3.2 3 1 0 3 3 2 0 AAA-like domain DUF2075 PF09848.4 gi|305663571|ref|YP_003859859.1| - 0.055 12.4 0.0 3.2 6.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AFG1_ATPase PF03969.11 gi|305663571|ref|YP_003859859.1| - 0.066 12.0 0.0 11 4.6 0.0 2.6 2 1 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.10 gi|305663571|ref|YP_003859859.1| - 0.086 12.6 0.0 6.9 6.4 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit IPT PF01745.11 gi|305663571|ref|YP_003859859.1| - 0.11 11.6 0.0 5.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Isopentenyl transferase AAA_11 PF13086.1 gi|305663571|ref|YP_003859859.1| - 0.13 11.8 0.0 17 4.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|305663571|ref|YP_003859859.1| - 0.17 11.0 0.0 10 5.2 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit tRNA_lig_kinase PF08303.6 gi|305663571|ref|YP_003859859.1| - 0.19 11.5 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 0 tRNA ligase kinase domain AAA_23 PF13476.1 gi|305663571|ref|YP_003859859.1| - 0.22 11.8 0.1 21 5.3 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_21 PF13304.1 gi|305663571|ref|YP_003859859.1| - 0.25 11.2 1.5 9 6.1 0.0 3.1 3 1 1 4 4 3 0 AAA domain PEP-utilizers_C PF02896.13 gi|305663572|ref|YP_003859860.1| - 1.1e-88 296.9 0.1 2.2e-88 295.9 0.1 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PPDK_N PF01326.14 gi|305663572|ref|YP_003859860.1| - 4.2e-52 177.2 0.0 9.6e-51 172.7 0.0 2.9 1 1 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers PF00391.18 gi|305663572|ref|YP_003859860.1| - 2.7e-21 74.9 0.6 5.5e-21 73.9 0.4 1.5 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Hexapep PF00132.19 gi|305663573|ref|YP_003859861.1| - 9.7e-33 110.2 27.5 1.5e-09 36.8 4.2 6.0 5 1 1 6 6 6 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|305663573|ref|YP_003859861.1| - 8.5e-17 60.4 25.3 8.3e-11 41.2 3.6 6.0 6 2 0 6 6 6 4 Hexapeptide repeat of succinyl-transferase DUF2613 PF11021.3 gi|305663573|ref|YP_003859861.1| - 0.077 12.7 1.1 0.15 11.7 0.8 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DNA_pol_B PF00136.16 gi|305663574|ref|YP_003859862.1| - 2.4e-93 313.4 0.6 3.3e-93 313.0 0.4 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|305663574|ref|YP_003859862.1| - 9.3e-32 110.1 3.3 9.3e-32 110.1 2.3 1.6 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|305663574|ref|YP_003859862.1| - 0.0013 18.5 0.2 0.0082 15.9 0.1 2.3 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.4 gi|305663574|ref|YP_003859862.1| - 0.0019 17.7 0.0 0.0039 16.7 0.0 1.5 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB Blo-t-5 PF11642.3 gi|305663574|ref|YP_003859862.1| - 0.028 14.1 1.3 0.14 11.9 0.0 2.7 2 0 0 2 2 2 0 Mite allergen Blo t 5 SLAC1 PF03595.12 gi|305663575|ref|YP_003859863.1| - 0.26 9.8 12.0 0.73 8.4 8.3 1.6 1 1 0 1 1 1 0 Voltage-dependent anion channel DUF1772 PF08592.6 gi|305663575|ref|YP_003859863.1| - 0.37 10.5 4.2 0.4 10.4 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF485 PF04341.7 gi|305663575|ref|YP_003859863.1| - 0.52 10.0 7.4 0.72 9.6 5.2 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF485 PIRT PF15099.1 gi|305663575|ref|YP_003859863.1| - 1.5 8.0 7.8 1.8 7.7 5.4 1.3 1 1 0 1 1 1 0 Phosphoinositide-interacting protein family DUF2839 PF10999.3 gi|305663575|ref|YP_003859863.1| - 1.8 8.6 12.8 0.61 10.1 3.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2839) MerC PF03203.9 gi|305663575|ref|YP_003859863.1| - 1.9 8.8 7.2 2.2 8.6 5.0 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein ABC2_membrane_3 PF12698.2 gi|305663575|ref|YP_003859863.1| - 6 5.7 14.1 6.5 5.6 9.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2286 PF10051.4 gi|305663576|ref|YP_003859864.1| - 1e-40 138.6 4.5 1.2e-40 138.4 3.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DUF1626 PF07788.6 gi|305663576|ref|YP_003859864.1| - 0.035 13.8 1.0 0.19 11.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1626) TGS PF02824.16 gi|305663578|ref|YP_003859866.1| - 2.4e-20 72.1 0.0 4.3e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1 PF01926.18 gi|305663578|ref|YP_003859866.1| - 1.3e-13 50.9 0.3 3.2e-13 49.6 0.0 1.7 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|305663578|ref|YP_003859866.1| - 5e-05 23.1 0.3 0.0015 18.3 0.1 2.5 1 1 1 2 2 2 1 Dynamin family FeoB_N PF02421.13 gi|305663578|ref|YP_003859866.1| - 0.00011 21.4 0.8 0.0035 16.6 0.0 2.4 2 1 0 2 2 2 1 Ferrous iron transport protein B Miro PF08477.8 gi|305663578|ref|YP_003859866.1| - 0.00031 21.2 0.0 0.0008 19.9 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|305663578|ref|YP_003859866.1| - 0.00044 19.5 0.1 0.15 11.3 0.0 2.5 2 1 0 2 2 2 2 ADP-ribosylation factor family PduV-EutP PF10662.4 gi|305663578|ref|YP_003859866.1| - 0.0017 17.8 0.1 1.9 7.9 0.0 2.5 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|305663578|ref|YP_003859866.1| - 0.0073 15.7 0.0 1.9 7.8 0.0 2.9 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain cobW PF02492.14 gi|305663578|ref|YP_003859866.1| - 0.015 14.7 0.7 0.33 10.3 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF815 PF05673.8 gi|305663578|ref|YP_003859866.1| - 0.039 12.8 0.0 0.062 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Gtr1_RagA PF04670.7 gi|305663578|ref|YP_003859866.1| - 0.12 11.4 0.1 0.55 9.3 0.0 1.9 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region MobB PF03205.9 gi|305663578|ref|YP_003859866.1| - 0.12 12.0 0.3 0.31 10.7 0.1 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B YchF-GTPase_C PF06071.8 gi|305663578|ref|YP_003859866.1| - 0.13 12.0 0.5 5 6.9 0.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF933) Enolase_C PF00113.17 gi|305663579|ref|YP_003859867.1| - 3.7e-106 354.4 0.4 5.1e-106 353.9 0.3 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|305663579|ref|YP_003859867.1| - 6.1e-51 171.8 0.6 1.4e-50 170.6 0.4 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE PF01188.16 gi|305663579|ref|YP_003859867.1| - 0.00022 21.6 0.0 0.00056 20.3 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|305663579|ref|YP_003859867.1| - 0.0037 17.2 0.0 0.011 15.6 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like DAGK_cat PF00781.19 gi|305663579|ref|YP_003859867.1| - 0.0041 16.5 0.0 0.012 15.0 0.0 1.8 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain LdpA_C PF12617.3 gi|305663579|ref|YP_003859867.1| - 0.092 11.9 0.0 0.22 10.7 0.0 1.6 1 0 0 1 1 1 0 Iron-Sulfur binding protein C terminal UPF0547 PF10571.4 gi|305663580|ref|YP_003859868.1| - 0.00079 19.0 3.3 0.13 11.9 0.1 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|305663580|ref|YP_003859868.1| - 0.00082 18.5 4.8 0.27 10.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|305663580|ref|YP_003859868.1| - 0.0027 17.5 2.0 0.0076 16.0 1.4 1.7 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|305663580|ref|YP_003859868.1| - 0.0067 15.8 6.0 0.61 9.6 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain TFIIS_C PF01096.13 gi|305663580|ref|YP_003859868.1| - 0.0076 15.8 2.2 0.15 11.6 0.2 2.4 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) zf-NADH-PPase PF09297.6 gi|305663580|ref|YP_003859868.1| - 0.013 15.0 3.0 0.19 11.2 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Ogr_Delta PF04606.7 gi|305663580|ref|YP_003859868.1| - 0.013 15.0 1.4 3 7.5 0.1 2.3 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger TF_Zn_Ribbon PF08271.7 gi|305663580|ref|YP_003859868.1| - 0.016 14.5 1.5 4 6.8 0.0 2.4 2 0 0 2 2 2 0 TFIIB zinc-binding zf-IS66 PF13005.2 gi|305663580|ref|YP_003859868.1| - 0.016 15.1 0.7 0.057 13.3 0.5 1.9 1 1 0 1 1 1 0 zinc-finger binding domain of transposase IS66 Cren7 PF11520.3 gi|305663580|ref|YP_003859868.1| - 0.019 14.5 0.2 0.064 12.8 0.0 1.9 2 0 0 2 2 2 0 Chromatin protein Cren7 zf-ISL3 PF14690.1 gi|305663580|ref|YP_003859868.1| - 0.019 14.9 0.7 5.3 7.1 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|305663580|ref|YP_003859868.1| - 0.037 13.8 3.4 0.17 11.6 2.4 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|305663580|ref|YP_003859868.1| - 0.044 13.7 1.2 9.1 6.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Cys_rich_KTR PF14205.1 gi|305663580|ref|YP_003859868.1| - 0.055 12.9 1.2 3.7 7.0 0.2 2.4 2 0 0 2 2 2 0 Cysteine-rich KTR zinc_ribbon_5 PF13719.1 gi|305663580|ref|YP_003859868.1| - 0.055 13.0 2.5 2.6 7.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.2 gi|305663580|ref|YP_003859868.1| - 0.075 12.6 2.1 7.8 6.2 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) OrfB_Zn_ribbon PF07282.6 gi|305663580|ref|YP_003859868.1| - 0.081 12.5 1.6 7.8 6.2 0.0 2.6 3 0 0 3 3 3 0 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|305663580|ref|YP_003859868.1| - 0.082 12.5 3.3 2 8.1 0.2 2.2 2 0 0 2 2 2 0 HIT zinc finger zinc_ribbon_4 PF13717.1 gi|305663580|ref|YP_003859868.1| - 0.11 12.2 3.1 3.3 7.4 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ZPR1 PF03367.8 gi|305663580|ref|YP_003859868.1| - 0.11 11.6 0.3 0.2 10.7 0.2 1.6 1 1 0 1 1 1 0 ZPR1 zinc-finger domain TerY-C PF15616.1 gi|305663580|ref|YP_003859868.1| - 0.11 12.3 0.6 10 6.0 0.0 2.2 2 0 0 2 2 2 0 TerY-C metal binding domain CpXC PF14353.1 gi|305663580|ref|YP_003859868.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 CpXC protein zf-nanos PF05741.8 gi|305663580|ref|YP_003859868.1| - 0.12 12.3 0.4 0.43 10.5 0.3 1.8 1 1 1 2 2 2 0 Nanos RNA binding domain zf-3CxxC PF13695.1 gi|305663580|ref|YP_003859868.1| - 0.13 12.5 0.5 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 Zinc-binding domain UPF0515 PF15135.1 gi|305663580|ref|YP_003859868.1| - 0.14 11.1 1.0 0.26 10.2 0.1 1.8 2 0 0 2 2 2 0 Uncharacterised protein UPF0515 zf-tcix PF14952.1 gi|305663580|ref|YP_003859868.1| - 0.16 11.3 2.6 5.4 6.4 0.3 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf-C2H2_4 PF13894.1 gi|305663580|ref|YP_003859868.1| - 0.17 12.2 0.3 7.3 7.1 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|305663580|ref|YP_003859868.1| - 0.21 11.5 2.9 4.8 7.1 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin DUF4379 PF14311.1 gi|305663580|ref|YP_003859868.1| - 0.24 11.2 1.7 0.63 9.9 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Prok-RING_4 PF14447.1 gi|305663580|ref|YP_003859868.1| - 0.25 10.8 1.3 0.44 10.1 0.1 1.9 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 DUF1610 PF07754.6 gi|305663580|ref|YP_003859868.1| - 0.4 10.8 8.6 0.67 10.1 1.8 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-Mss51 PF13824.1 gi|305663580|ref|YP_003859868.1| - 0.87 9.4 2.8 6.2 6.7 1.9 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-TFIIB PF13453.1 gi|305663580|ref|YP_003859868.1| - 1.9 7.7 4.4 13 5.1 3.1 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger Peptidase_S24 PF00717.18 gi|305663581|ref|YP_003859869.1| - 2e-11 43.3 0.1 3.4e-11 42.6 0.1 1.4 1 0 0 1 1 1 1 Peptidase S24-like Topoisom_bac PF01131.15 gi|305663582|ref|YP_003859870.1| - 2.4e-98 329.6 0.0 3e-98 329.3 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.17 gi|305663582|ref|YP_003859870.1| - 1.4e-11 44.2 0.0 3.3e-11 43.0 0.0 1.7 1 0 0 1 1 1 1 Toprim domain RNA_pol_Rpb6 PF01192.17 gi|305663583|ref|YP_003859871.1| - 6.1e-17 61.1 1.2 2.5e-16 59.1 0.1 2.1 1 1 1 2 2 2 1 RNA polymerase Rpb6 Cpn60_TCP1 PF00118.19 gi|305663584|ref|YP_003859872.1| - 1.2e-167 558.4 12.2 1.4e-167 558.2 8.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Peptidase_M16 PF00675.15 gi|305663584|ref|YP_003859872.1| - 0.11 12.2 0.4 6.8 6.4 0.0 2.4 1 1 1 2 2 2 0 Insulinase (Peptidase family M16) RecR PF02132.10 gi|305663585|ref|YP_003859873.1| - 2e-05 23.9 1.6 2e-05 23.9 1.1 2.6 3 0 0 3 3 3 1 RecR protein NRDD PF13597.1 gi|305663585|ref|YP_003859873.1| - 0.029 12.4 0.2 0.029 12.4 0.1 1.7 2 0 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase DZR PF12773.2 gi|305663585|ref|YP_003859873.1| - 0.059 13.2 2.7 4.4 7.1 0.1 2.3 2 0 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|305663585|ref|YP_003859873.1| - 0.78 9.3 5.0 40 3.8 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|305663585|ref|YP_003859873.1| - 2.2 7.6 6.7 2.3 7.5 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|305663585|ref|YP_003859873.1| - 3 7.6 6.4 6.5 6.5 0.0 3.2 3 0 0 3 3 3 0 BED zinc finger Thioredoxin_6 PF13848.1 gi|305663586|ref|YP_003859874.1| - 0.093 12.5 0.3 0.54 10.0 0.0 1.9 1 1 0 2 2 2 0 Thioredoxin-like domain DUF1662 PF07878.6 gi|305663587|ref|YP_003859875.1| - 0.011 15.4 0.3 0.061 13.0 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1662) RPA_interact_C PF14768.1 gi|305663587|ref|YP_003859875.1| - 0.085 13.2 0.2 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Replication protein A interacting C-terminal zf-C3HC4_3 PF13920.1 gi|305663587|ref|YP_003859875.1| - 0.11 12.1 0.9 0.18 11.5 0.6 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Ribonuc_red_lgC PF02867.10 gi|305663588|ref|YP_003859876.1| - 1.2e-167 558.7 0.0 1.6e-167 558.3 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|305663588|ref|YP_003859876.1| - 1.9e-23 82.0 0.0 5.6e-23 80.5 0.0 1.9 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.11 gi|305663588|ref|YP_003859876.1| - 1.6e-10 41.2 1.5 1.6e-10 41.2 1.0 2.7 3 0 0 3 3 3 1 ATP cone domain AIRS PF00586.19 gi|305663590|ref|YP_003859878.1| - 1.9e-07 31.2 0.0 5e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Radical_SAM PF04055.16 gi|305663591|ref|YP_003859879.1| - 1.8e-21 76.9 2.4 5.7e-21 75.3 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305663591|ref|YP_003859879.1| - 9.6e-08 32.2 0.2 7.9e-07 29.2 0.0 2.2 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305663591|ref|YP_003859879.1| - 1e-07 32.0 0.2 4.3e-07 29.9 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-CHC2 PF01807.15 gi|305663591|ref|YP_003859879.1| - 0.063 12.8 0.1 0.87 9.1 0.0 2.6 2 0 0 2 2 2 0 CHC2 zinc finger AAA_22 PF13401.1 gi|305663592|ref|YP_003859880.1| - 0.0025 17.9 0.0 1.9 8.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain T2SE PF00437.15 gi|305663592|ref|YP_003859880.1| - 0.0045 15.9 0.7 0.0089 14.9 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|305663592|ref|YP_003859880.1| - 0.0054 15.8 0.1 0.014 14.5 0.0 1.6 1 1 0 1 1 1 1 Zeta toxin cobW PF02492.14 gi|305663592|ref|YP_003859880.1| - 0.0083 15.5 0.2 0.028 13.8 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|305663592|ref|YP_003859880.1| - 0.01 16.6 0.1 0.044 14.6 0.0 2.3 1 1 0 1 1 1 0 AAA domain CbiA PF01656.18 gi|305663592|ref|YP_003859880.1| - 0.011 15.1 5.8 0.012 14.9 0.2 2.9 2 1 0 3 3 3 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_18 PF13238.1 gi|305663592|ref|YP_003859880.1| - 0.027 14.8 0.1 0.065 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|305663592|ref|YP_003859880.1| - 0.052 12.9 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 Thymidylate kinase MobB PF03205.9 gi|305663592|ref|YP_003859880.1| - 0.055 13.1 0.0 0.18 11.4 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Torsin PF06309.6 gi|305663592|ref|YP_003859880.1| - 0.1 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Torsin Cyanate_lyase PF02560.9 gi|305663592|ref|YP_003859880.1| - 0.32 10.5 2.9 2 7.9 0.0 2.9 3 0 0 3 3 3 0 Cyanate lyase C-terminal domain AAA PF00004.24 gi|305663593|ref|YP_003859881.1| - 3e-20 72.7 0.0 8.1e-20 71.3 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305663593|ref|YP_003859881.1| - 1.3e-06 29.2 0.1 8.8e-06 26.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain EF-hand_8 PF13833.1 gi|305663593|ref|YP_003859881.1| - 0.0027 17.2 0.3 0.1 12.2 0.0 2.7 3 0 0 3 3 3 1 EF-hand domain pair AAA_16 PF13191.1 gi|305663593|ref|YP_003859881.1| - 0.0036 17.3 3.2 0.25 11.3 0.1 3.2 2 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663593|ref|YP_003859881.1| - 0.0052 16.9 3.3 0.11 12.5 1.1 3.0 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|305663593|ref|YP_003859881.1| - 0.0061 16.4 0.0 0.086 12.7 0.0 2.6 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.7 gi|305663593|ref|YP_003859881.1| - 0.0096 15.0 0.0 0.027 13.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|305663593|ref|YP_003859881.1| - 0.018 15.3 0.7 0.056 13.7 0.0 2.2 2 1 1 3 3 2 0 AAA domain TIP49 PF06068.8 gi|305663593|ref|YP_003859881.1| - 0.02 13.6 0.8 0.19 10.3 0.6 2.6 1 1 0 1 1 1 0 TIP49 C-terminus AAA_5 PF07728.9 gi|305663593|ref|YP_003859881.1| - 0.049 13.3 0.2 0.13 12.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.12 gi|305663593|ref|YP_003859881.1| - 0.089 12.2 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|305663593|ref|YP_003859881.1| - 0.1 12.7 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|305663593|ref|YP_003859881.1| - 0.15 12.0 0.0 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain DHH PF01368.15 gi|305663594|ref|YP_003859882.1| - 5.7e-08 32.5 1.3 5.6e-06 26.0 0.5 2.2 2 0 0 2 2 2 2 DHH family DHHA1 PF02272.14 gi|305663594|ref|YP_003859882.1| - 1.9e-05 24.2 0.0 3.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain RD3 PF14473.1 gi|305663594|ref|YP_003859882.1| - 0.012 15.0 0.1 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 RD3 protein DegT_DnrJ_EryC1 PF01041.12 gi|305663595|ref|YP_003859883.1| - 2.1e-119 398.7 0.0 2.4e-119 398.6 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|305663595|ref|YP_003859883.1| - 2.5e-06 26.8 0.2 4.1e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|305663595|ref|YP_003859883.1| - 3.9e-06 25.3 0.2 5.6e-06 24.8 0.1 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|305663595|ref|YP_003859883.1| - 1.2e-05 24.2 0.2 2.1e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Peptidase_M24 PF00557.19 gi|305663596|ref|YP_003859884.1| - 3.5e-48 163.9 0.1 4.8e-48 163.4 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Elf1 PF05129.8 gi|305663597|ref|YP_003859885.1| - 0.001 18.7 1.2 0.0025 17.4 0.8 1.6 1 1 0 1 1 1 1 Transcription elongation factor Elf1 like zf-FPG_IleRS PF06827.9 gi|305663597|ref|YP_003859885.1| - 0.0016 18.0 2.0 0.3 10.7 0.2 2.3 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS Lar_restr_allev PF14354.1 gi|305663597|ref|YP_003859885.1| - 0.029 14.6 0.6 0.07 13.4 0.4 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|305663597|ref|YP_003859885.1| - 0.036 13.2 0.3 0.98 8.6 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger GH3 PF03321.8 gi|305663597|ref|YP_003859885.1| - 0.08 11.4 0.0 0.087 11.3 0.0 1.0 1 0 0 1 1 1 0 GH3 auxin-responsive promoter Terminase_GpA PF05876.7 gi|305663597|ref|YP_003859885.1| - 0.086 11.1 0.7 0.099 10.9 0.5 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Prim_Zn_Ribbon PF08273.7 gi|305663597|ref|YP_003859885.1| - 0.093 12.8 0.1 3.7 7.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|305663597|ref|YP_003859885.1| - 0.13 12.0 1.3 0.28 11.0 0.9 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-Di19 PF05605.7 gi|305663597|ref|YP_003859885.1| - 0.31 11.1 2.0 1.4 9.0 1.4 1.9 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zinc-ribbons_6 PF07191.7 gi|305663597|ref|YP_003859885.1| - 0.37 10.6 2.6 0.77 9.5 1.8 1.6 1 1 0 1 1 1 0 zinc-ribbons Rubredoxin PF00301.15 gi|305663597|ref|YP_003859885.1| - 0.41 10.5 2.6 6.1 6.7 1.8 2.1 1 1 0 1 1 1 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|305663597|ref|YP_003859885.1| - 0.7 9.7 3.0 29 4.5 2.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain C1_3 PF07649.7 gi|305663597|ref|YP_003859885.1| - 0.82 9.7 3.8 2.7 8.1 0.3 2.1 2 0 0 2 2 2 0 C1-like domain Cys_rich_KTR PF14205.1 gi|305663597|ref|YP_003859885.1| - 1.2 8.6 6.1 4.5 6.8 0.3 2.3 1 1 0 1 1 1 0 Cysteine-rich KTR DUF3797 PF12677.2 gi|305663597|ref|YP_003859885.1| - 1.2 8.8 7.1 0.67 9.6 0.8 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|305663597|ref|YP_003859885.1| - 1.6 8.3 4.3 1.6 8.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YwqJ-deaminase PF14431.1 gi|305663597|ref|YP_003859885.1| - 3 7.7 6.0 0.97 9.3 0.6 2.4 1 1 2 3 3 3 0 YwqJ-like deaminase DUF2208 PF09973.4 gi|305663598|ref|YP_003859886.1| - 1.7e-27 96.1 10.7 2e-27 95.9 7.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) TraG_N PF07916.6 gi|305663598|ref|YP_003859886.1| - 0.0039 15.6 4.5 0.006 15.0 3.2 1.2 1 0 0 1 1 1 1 TraG-like protein, N-terminal region Peptidase_M50B PF13398.1 gi|305663598|ref|YP_003859886.1| - 0.061 12.6 3.9 0.09 12.1 2.7 1.3 1 0 0 1 1 1 0 Peptidase M50B-like Tic20 PF09685.5 gi|305663598|ref|YP_003859886.1| - 3.8 7.5 11.2 3.2 7.7 2.2 2.3 2 0 0 2 2 2 0 Tic20-like protein DUF872 PF05915.7 gi|305663599|ref|YP_003859887.1| - 0.12 12.2 0.0 0.12 12.2 0.0 1.1 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) PepSY_TM PF03929.11 gi|305663599|ref|YP_003859887.1| - 0.21 12.0 1.2 0.29 11.6 0.8 1.2 1 0 0 1 1 1 0 PepSY-associated TM helix THUMP PF02926.12 gi|305663600|ref|YP_003859888.1| - 4.3e-07 29.9 0.0 6.1e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 THUMP domain UPF0086 PF01868.11 gi|305663601|ref|YP_003859889.1| - 0.00029 20.4 0.4 0.014 15.0 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function UPF0086 Flag1_repress PF03614.8 gi|305663601|ref|YP_003859889.1| - 0.028 13.9 0.1 0.1 12.1 0.0 1.8 2 0 0 2 2 2 0 Repressor of phase-1 flagellin 5-FTHF_cyc-lig PF01812.15 gi|305663602|ref|YP_003859890.1| - 1.2e-30 106.7 0.0 1.5e-30 106.3 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family tRNA-synt_1e PF01406.14 gi|305663603|ref|YP_003859891.1| - 2.6e-121 404.3 0.0 4.5e-121 403.6 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|305663603|ref|YP_003859891.1| - 1.8e-19 69.7 1.3 7.8e-11 41.2 0.2 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|305663603|ref|YP_003859891.1| - 5.5e-11 41.1 0.1 8.7e-10 37.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.6 gi|305663603|ref|YP_003859891.1| - 5.7e-08 32.8 0.3 1.3e-07 31.7 0.0 1.7 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.13 gi|305663603|ref|YP_003859891.1| - 2.4e-07 29.7 0.4 3.1e-06 26.1 0.1 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) TBCA PF02970.11 gi|305663603|ref|YP_003859891.1| - 0.012 15.6 0.3 0.031 14.3 0.2 1.7 1 0 0 1 1 1 0 Tubulin binding cofactor A DUF2187 PF09953.4 gi|305663603|ref|YP_003859891.1| - 0.08 12.6 1.7 7.7 6.3 0.3 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2187) tRNA-synt_1b PF00579.20 gi|305663603|ref|YP_003859891.1| - 0.18 10.9 1.2 3.6 6.6 0.0 2.4 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) ORC2 PF04084.9 gi|305663604|ref|YP_003859892.1| - 0.0013 17.6 0.1 0.0014 17.5 0.1 1.3 1 1 0 1 1 1 1 Origin recognition complex subunit 2 DUF2608 PF11019.3 gi|305663604|ref|YP_003859892.1| - 1.6 7.6 8.2 5.6 5.8 0.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2608) zf-C3HC4_3 PF13920.1 gi|305663605|ref|YP_003859893.1| - 0.018 14.7 28.8 0.18 11.4 7.9 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-B_box PF00643.19 gi|305663605|ref|YP_003859893.1| - 0.02 14.7 3.5 0.02 14.7 2.4 3.0 3 1 0 3 3 3 0 B-box zinc finger zf-RING_5 PF14634.1 gi|305663605|ref|YP_003859893.1| - 1.1 9.1 27.6 3.2 7.5 6.3 3.3 2 2 0 2 2 2 0 zinc-RING finger domain FYVE PF01363.16 gi|305663605|ref|YP_003859893.1| - 1.9 8.4 30.2 1.5e+02 2.4 12.5 3.5 1 1 1 2 2 2 0 FYVE zinc finger Prok-RING_2 PF14445.1 gi|305663605|ref|YP_003859893.1| - 4.4 7.3 23.4 3.4 7.6 0.7 3.5 1 1 2 3 3 3 0 Prokaryotic RING finger family 2 zf-C3HC4_2 PF13923.1 gi|305663605|ref|YP_003859893.1| - 5.9 6.9 31.4 5.2 7.1 7.2 2.5 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) DUF2180 PF09947.4 gi|305663605|ref|YP_003859893.1| - 7.7 6.3 23.8 0.46 10.2 0.3 3.1 2 2 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) YabP PF07873.6 gi|305663606|ref|YP_003859894.1| - 0.03 13.8 2.8 0.15 11.6 0.3 2.3 1 1 1 2 2 2 0 YabP family DUF2762 PF10960.3 gi|305663606|ref|YP_003859894.1| - 0.2 11.3 1.0 0.59 9.8 0.2 2.3 2 2 0 2 2 2 0 Protein of unknown function (DUF2762) RHH_1 PF01402.16 gi|305663607|ref|YP_003859895.1| - 2e-05 24.2 0.0 7.4e-05 22.4 0.0 2.0 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.7 gi|305663607|ref|YP_003859895.1| - 0.00068 19.4 0.5 0.0026 17.5 0.2 1.9 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1778 PF08681.6 gi|305663607|ref|YP_003859895.1| - 0.00093 18.9 0.8 0.91 9.3 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF1778) Ax_dynein_light PF10211.4 gi|305663607|ref|YP_003859895.1| - 0.0062 16.3 5.3 0.0062 16.3 3.7 2.6 1 1 1 3 3 3 1 Axonemal dynein light chain HSBP1 PF06825.7 gi|305663607|ref|YP_003859895.1| - 0.03 13.8 7.9 0.26 10.8 2.8 3.3 2 1 0 2 2 2 0 Heat shock factor binding protein 1 CENP-F_leu_zip PF10473.4 gi|305663607|ref|YP_003859895.1| - 0.037 13.9 13.0 0.046 13.5 5.1 2.3 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Laminin_I PF06008.9 gi|305663607|ref|YP_003859895.1| - 0.04 13.2 6.4 0.049 12.9 4.2 1.4 1 1 0 1 1 1 0 Laminin Domain I Sec34 PF04136.10 gi|305663607|ref|YP_003859895.1| - 0.043 13.5 2.6 0.4 10.3 1.8 2.4 1 1 0 1 1 1 0 Sec34-like family MtrB PF05440.7 gi|305663607|ref|YP_003859895.1| - 0.059 13.4 0.8 3 7.9 0.2 2.8 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF1465 PF07323.7 gi|305663607|ref|YP_003859895.1| - 0.063 12.8 1.1 0.16 11.5 0.3 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1465) FliD_C PF07195.7 gi|305663607|ref|YP_003859895.1| - 0.099 11.9 4.0 0.057 12.7 0.8 2.0 1 1 1 2 2 2 0 Flagellar hook-associated protein 2 C-terminus Phasin PF05597.6 gi|305663607|ref|YP_003859895.1| - 0.11 12.2 7.7 0.037 13.7 1.5 2.5 1 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Snf7 PF03357.16 gi|305663607|ref|YP_003859895.1| - 0.14 11.5 11.7 0.019 14.3 3.1 2.7 3 0 0 3 3 3 0 Snf7 Matrilin_ccoil PF10393.4 gi|305663607|ref|YP_003859895.1| - 0.21 10.9 0.1 0.21 10.9 0.1 3.1 3 1 2 5 5 5 0 Trimeric coiled-coil oligomerisation domain of matrilin RasGAP_C PF03836.10 gi|305663607|ref|YP_003859895.1| - 0.23 11.1 7.7 0.47 10.1 5.3 1.5 1 0 0 1 1 1 0 RasGAP C-terminus Sugarporin_N PF11471.3 gi|305663607|ref|YP_003859895.1| - 0.25 10.9 6.1 0.35 10.5 1.7 2.6 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension Snapin_Pallidin PF14712.1 gi|305663607|ref|YP_003859895.1| - 0.27 11.5 5.5 0.18 12.1 2.1 2.0 2 1 1 3 3 2 0 Snapin/Pallidin Fib_alpha PF08702.5 gi|305663607|ref|YP_003859895.1| - 0.27 11.3 12.6 0.037 14.1 3.1 2.7 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.7 gi|305663607|ref|YP_003859895.1| - 0.38 10.4 9.3 0.35 10.6 5.3 1.8 1 1 0 1 1 1 0 Laminin Domain II DUF972 PF06156.8 gi|305663607|ref|YP_003859895.1| - 0.42 10.9 6.4 0.13 12.5 0.9 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Syntaxin-6_N PF09177.6 gi|305663607|ref|YP_003859895.1| - 0.52 10.7 5.9 0.34 11.3 2.1 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal APG6 PF04111.7 gi|305663607|ref|YP_003859895.1| - 0.66 8.9 10.6 0.32 9.9 5.6 1.6 1 1 1 2 2 2 0 Autophagy protein Apg6 Hormone_1 PF00103.15 gi|305663607|ref|YP_003859895.1| - 0.71 9.1 3.9 0.3 10.3 1.1 1.6 2 0 0 2 2 2 0 Somatotropin hormone family Mitofilin PF09731.4 gi|305663607|ref|YP_003859895.1| - 1.2 7.7 14.9 0.3 9.6 4.9 2.1 1 1 1 2 2 2 0 Mitochondrial inner membrane protein IncA PF04156.9 gi|305663607|ref|YP_003859895.1| - 1.3 8.5 12.0 1.3 8.5 7.5 1.7 1 1 0 1 1 1 0 IncA protein Atg14 PF10186.4 gi|305663607|ref|YP_003859895.1| - 5 5.9 8.5 7.2 5.4 5.9 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 TcdB_N PF12918.2 gi|305663607|ref|YP_003859895.1| - 5.8 7.0 8.5 10 6.2 0.4 3.6 3 0 0 3 3 3 0 TcdB toxin N-terminal helical domain NPV_P10 PF05531.7 gi|305663607|ref|YP_003859895.1| - 9.8 6.5 8.6 12 6.2 2.7 3.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein QRPTase_C PF01729.14 gi|305663608|ref|YP_003859896.1| - 4.2e-24 84.9 0.0 5.7e-24 84.5 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|305663608|ref|YP_003859896.1| - 0.00075 19.2 0.0 0.0013 18.5 0.0 1.3 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribosomal_S2 PF00318.15 gi|305663608|ref|YP_003859896.1| - 0.13 11.4 0.0 0.3 10.2 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein S2 Kelch_1 PF01344.20 gi|305663608|ref|YP_003859896.1| - 0.19 11.2 3.6 0.11 12.0 0.5 2.0 2 1 0 2 2 2 0 Kelch motif PapC_N PF13954.1 gi|305663609|ref|YP_003859897.1| - 0.13 11.8 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 PapC N-terminal domain tRNA-synt_1 PF00133.17 gi|305663610|ref|YP_003859898.1| - 8.4e-54 182.5 0.3 5.6e-37 127.0 0.0 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.6 gi|305663610|ref|YP_003859898.1| - 4.8e-30 104.4 0.2 2.6e-14 52.6 0.1 3.8 3 1 1 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|305663610|ref|YP_003859898.1| - 2.9e-12 46.3 0.0 2e-06 27.1 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|305663610|ref|YP_003859898.1| - 1.3e-10 41.2 0.9 4.1e-09 36.3 0.3 2.5 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.1 gi|305663610|ref|YP_003859898.1| - 2e-07 30.4 0.1 8.7e-07 28.4 0.0 2.0 2 1 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1d PF00750.14 gi|305663610|ref|YP_003859898.1| - 0.0017 17.2 0.0 0.014 14.2 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|305663610|ref|YP_003859898.1| - 0.004 15.8 0.0 0.67 8.5 0.0 2.7 2 0 0 2 2 2 2 tRNA synthetases class I (K) DUF4271 PF14093.1 gi|305663612|ref|YP_003859900.1| - 0.0017 18.0 9.7 0.0019 17.9 6.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) SdpI PF13630.1 gi|305663612|ref|YP_003859900.1| - 0.4 10.4 9.5 0.58 9.9 6.6 1.4 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2207 PF09972.4 gi|305663612|ref|YP_003859900.1| - 0.72 8.3 7.4 0.72 8.3 5.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ABC2_membrane_3 PF12698.2 gi|305663612|ref|YP_003859900.1| - 1.8 7.5 14.4 2 7.3 10.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3043 PF11241.3 gi|305663612|ref|YP_003859900.1| - 2 7.9 4.4 2.4 7.7 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) PrgI PF12666.2 gi|305663612|ref|YP_003859900.1| - 2.2 8.4 6.7 2.9 8.0 4.7 1.2 1 0 0 1 1 1 0 PrgI family protein Thioredoxin_3 PF13192.1 gi|305663614|ref|YP_003859902.1| - 1.4e-22 79.2 0.1 1.8e-13 50.0 0.0 2.3 2 0 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.15 gi|305663614|ref|YP_003859902.1| - 4.5e-07 29.4 0.0 0.0042 16.7 0.0 2.2 2 0 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.1 gi|305663614|ref|YP_003859902.1| - 8.9e-05 22.6 1.3 0.29 11.3 0.0 3.5 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.19 gi|305663614|ref|YP_003859902.1| - 0.012 15.6 3.5 5.8 6.9 1.9 3.3 2 1 0 2 2 2 0 Glutaredoxin Thioredoxin_4 PF13462.1 gi|305663614|ref|YP_003859902.1| - 0.017 15.1 0.6 7.4 6.5 0.0 3.3 3 1 1 4 4 4 0 Thioredoxin KaiB PF07689.7 gi|305663614|ref|YP_003859902.1| - 0.03 13.7 0.1 1.2 8.6 0.1 2.4 2 0 0 2 2 2 0 KaiB domain Pox_A8 PF04745.7 gi|305663614|ref|YP_003859902.1| - 0.038 12.9 0.0 0.059 12.3 0.0 1.3 1 0 0 1 1 1 0 VITF-3 subunit protein TrbC_Ftype PF09673.5 gi|305663614|ref|YP_003859902.1| - 0.067 12.7 0.1 7.2 6.2 0.1 2.7 3 1 0 3 3 3 0 Type-F conjugative transfer system pilin assembly protein UDPG_MGDP_dh PF00984.14 gi|305663615|ref|YP_003859903.1| - 3.9e-09 36.6 0.0 6.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|305663615|ref|YP_003859903.1| - 0.00056 19.7 0.0 0.01 15.7 0.0 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|305663615|ref|YP_003859903.1| - 0.0062 16.5 1.3 0.015 15.2 0.0 2.2 3 0 0 3 3 3 1 TrkA-N domain TENA_THI-4 PF03070.11 gi|305663615|ref|YP_003859903.1| - 0.012 15.4 1.0 0.48 10.1 0.6 2.2 2 0 0 2 2 2 0 TENA/THI-4/PQQC family UDPG_MGDP_dh_N PF03721.9 gi|305663615|ref|YP_003859903.1| - 0.013 14.8 0.1 0.18 11.1 0.0 2.5 3 0 0 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|305663615|ref|YP_003859903.1| - 0.026 13.6 0.0 0.042 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoMet_dc PF02675.10 gi|305663616|ref|YP_003859904.1| - 1.5e-33 114.8 0.0 1.8e-33 114.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase PDDEXK_1 PF12705.2 gi|305663617|ref|YP_003859905.1| - 5e-12 45.7 0.4 2.6e-08 33.5 0.4 3.0 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|305663617|ref|YP_003859905.1| - 1.9e-08 34.4 0.2 2.6e-08 33.9 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.1 gi|305663617|ref|YP_003859905.1| - 9.6e-07 28.8 0.2 1.6e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Paf67 PF10255.4 gi|305663617|ref|YP_003859905.1| - 0.0017 17.3 0.2 0.0024 16.8 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase I-associated factor PAF67 DUF1152 PF06626.7 gi|305663618|ref|YP_003859906.1| - 1.9e-90 302.9 0.0 2.3e-90 302.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) MarR PF01047.17 gi|305663619|ref|YP_003859907.1| - 4.1e-05 23.2 0.1 5.8e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|305663619|ref|YP_003859907.1| - 0.00078 19.0 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|305663619|ref|YP_003859907.1| - 0.0025 17.1 0.0 0.0046 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|305663619|ref|YP_003859907.1| - 0.0032 17.1 0.0 0.0044 16.7 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|305663619|ref|YP_003859907.1| - 0.006 16.8 0.0 0.0083 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|305663619|ref|YP_003859907.1| - 0.0063 16.6 0.0 0.0071 16.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|305663619|ref|YP_003859907.1| - 0.0084 15.8 0.1 0.012 15.3 0.0 1.3 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain SgrR_N PF12793.2 gi|305663619|ref|YP_003859907.1| - 0.016 15.2 0.0 0.018 15.0 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_45 PF14947.1 gi|305663619|ref|YP_003859907.1| - 0.028 14.2 0.1 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|305663619|ref|YP_003859907.1| - 0.03 14.1 0.0 0.038 13.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4248 PF14053.1 gi|305663619|ref|YP_003859907.1| - 0.035 13.7 0.0 0.056 13.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4248) RuvB_C PF05491.8 gi|305663619|ref|YP_003859907.1| - 0.058 13.0 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus DUF4194 PF13835.1 gi|305663619|ref|YP_003859907.1| - 0.073 12.5 0.1 0.094 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4194) Phage_rep_org_N PF09681.5 gi|305663619|ref|YP_003859907.1| - 0.11 12.0 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2087 PF09860.4 gi|305663619|ref|YP_003859907.1| - 0.12 12.1 0.2 0.16 11.7 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) FeoC PF09012.5 gi|305663619|ref|YP_003859907.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.5 1 1 1 2 2 2 0 FeoC like transcriptional regulator TIP49 PF06068.8 gi|305663620|ref|YP_003859908.1| - 3.4e-157 523.2 1.8 4e-157 523.0 1.2 1.0 1 0 0 1 1 1 1 TIP49 C-terminus AAA PF00004.24 gi|305663620|ref|YP_003859908.1| - 6e-12 45.9 1.8 1.9e-08 34.5 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|305663620|ref|YP_003859908.1| - 1.6e-08 34.7 0.0 0.00056 19.9 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain RuvB_N PF05496.7 gi|305663620|ref|YP_003859908.1| - 3.2e-06 26.3 2.0 4.4e-05 22.6 0.0 2.7 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|305663620|ref|YP_003859908.1| - 3.9e-06 27.0 0.0 0.023 14.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|305663620|ref|YP_003859908.1| - 1.4e-05 24.5 0.3 4.1e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|305663620|ref|YP_003859908.1| - 1.9e-05 24.3 1.1 0.0043 16.7 0.0 3.7 3 2 1 4 4 4 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|305663620|ref|YP_003859908.1| - 4e-05 24.4 0.6 0.00017 22.3 0.1 2.5 2 1 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|305663620|ref|YP_003859908.1| - 0.00021 20.4 0.0 0.00051 19.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Mg_chelatase PF01078.16 gi|305663620|ref|YP_003859908.1| - 0.00024 20.3 0.3 0.0044 16.2 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_33 PF13671.1 gi|305663620|ref|YP_003859908.1| - 0.00031 20.6 0.0 0.00095 19.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain Sigma54_activat PF00158.21 gi|305663620|ref|YP_003859908.1| - 0.00034 20.1 0.0 0.075 12.5 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_18 PF13238.1 gi|305663620|ref|YP_003859908.1| - 0.00045 20.5 0.1 0.0026 18.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|305663620|ref|YP_003859908.1| - 0.00046 19.8 0.0 0.0011 18.6 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|305663620|ref|YP_003859908.1| - 0.0014 17.5 0.0 0.0045 15.8 0.0 1.7 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.12 gi|305663620|ref|YP_003859908.1| - 0.0015 18.0 0.0 0.0036 16.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein ABC_tran PF00005.22 gi|305663620|ref|YP_003859908.1| - 0.0082 16.4 0.0 0.021 15.1 0.0 1.7 1 0 0 1 1 1 1 ABC transporter AAA_14 PF13173.1 gi|305663620|ref|YP_003859908.1| - 0.0094 15.8 0.0 0.9 9.4 0.0 2.7 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|305663620|ref|YP_003859908.1| - 0.01 15.4 0.0 0.03 13.9 0.0 1.8 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|305663620|ref|YP_003859908.1| - 0.012 15.3 0.0 0.58 9.8 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_28 PF13521.1 gi|305663620|ref|YP_003859908.1| - 0.018 14.9 0.9 0.16 11.8 0.0 2.9 4 0 0 4 4 3 0 AAA domain ResIII PF04851.10 gi|305663620|ref|YP_003859908.1| - 0.034 13.9 0.0 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|305663620|ref|YP_003859908.1| - 0.039 13.4 0.0 0.067 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_2 PF07724.9 gi|305663620|ref|YP_003859908.1| - 0.049 13.5 0.0 0.18 11.7 0.0 2.0 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) AAA_31 PF13614.1 gi|305663620|ref|YP_003859908.1| - 0.052 13.4 0.1 0.61 10.0 0.0 2.4 3 0 0 3 3 2 0 AAA domain RNA_helicase PF00910.17 gi|305663620|ref|YP_003859908.1| - 0.062 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Globin PF00042.17 gi|305663620|ref|YP_003859908.1| - 0.083 13.2 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 Globin DUF2075 PF09848.4 gi|305663620|ref|YP_003859908.1| - 0.093 11.6 0.0 0.13 11.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|305663620|ref|YP_003859908.1| - 0.1 11.8 0.0 0.25 10.5 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DNA_pol3_delta2 PF13177.1 gi|305663620|ref|YP_003859908.1| - 0.11 12.1 0.0 0.76 9.4 0.0 2.4 2 1 0 2 2 2 0 DNA polymerase III, delta subunit DUF2029 PF09594.5 gi|305663621|ref|YP_003859909.1| - 6.6e-06 25.7 2.6 6.6e-06 25.7 1.8 3.3 2 2 0 3 3 3 2 Protein of unknown function (DUF2029) PMT_2 PF13231.1 gi|305663622|ref|YP_003859910.1| - 1.2e-11 44.7 21.5 1.2e-11 44.7 14.9 3.2 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|305663622|ref|YP_003859910.1| - 5.3e-07 29.2 34.1 7.6e-07 28.7 14.9 3.6 3 1 1 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2448 PF10476.4 gi|305663622|ref|YP_003859910.1| - 0.074 12.5 0.1 0.25 10.8 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2448) DUF4533 PF15047.1 gi|305663623|ref|YP_003859911.1| - 0.009 15.4 0.4 0.17 11.2 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF4533) Duffy_binding PF05424.6 gi|305663623|ref|YP_003859911.1| - 0.093 12.5 0.4 0.14 11.9 0.3 1.2 1 0 0 1 1 1 0 Duffy binding domain HTH_45 PF14947.1 gi|305663624|ref|YP_003859912.1| - 0.01 15.6 0.3 0.025 14.3 0.1 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DUF2513 PF10711.4 gi|305663624|ref|YP_003859912.1| - 0.027 14.5 0.1 0.12 12.4 0.0 2.0 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) DUF2153 PF09921.4 gi|305663625|ref|YP_003859913.1| - 1.1e-42 144.6 0.2 1.2e-42 144.4 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) PRESAN PF09687.5 gi|305663625|ref|YP_003859913.1| - 0.084 12.9 0.1 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Plasmodium RESA N-terminal Trm112p PF03966.11 gi|305663626|ref|YP_003859914.1| - 6.2e-14 52.1 2.3 1.1e-13 51.3 1.6 1.4 1 0 0 1 1 1 1 Trm112p-like protein zf-UDP PF14569.1 gi|305663626|ref|YP_003859914.1| - 0.41 10.4 2.8 0.63 9.8 0.6 2.0 2 0 0 2 2 2 0 Zinc-binding RING-finger Prok-RING_1 PF14446.1 gi|305663626|ref|YP_003859914.1| - 0.48 10.1 3.1 1.3 8.8 0.6 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Auto_anti-p27 PF06677.7 gi|305663626|ref|YP_003859914.1| - 0.71 9.6 5.2 4.2 7.2 1.5 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) PHD PF00628.24 gi|305663626|ref|YP_003859914.1| - 1.2 8.8 7.6 0.87 9.3 1.9 2.7 2 1 1 3 3 3 0 PHD-finger DZR PF12773.2 gi|305663626|ref|YP_003859914.1| - 2.6 7.9 7.4 25 4.8 5.1 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-C2HC_2 PF13913.1 gi|305663626|ref|YP_003859914.1| - 3.4 7.4 4.9 20 5.0 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.1 gi|305663626|ref|YP_003859914.1| - 8.1 5.7 9.2 5.2 6.4 0.3 2.6 3 0 0 3 3 3 0 zinc-ribbon domain PGM_PMM_I PF02878.11 gi|305663627|ref|YP_003859915.1| - 7.3e-35 119.4 0.0 1.5e-34 118.4 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|305663627|ref|YP_003859915.1| - 2e-21 76.2 0.0 3.5e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|305663627|ref|YP_003859915.1| - 4.1e-13 49.3 0.0 8.2e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|305663627|ref|YP_003859915.1| - 7.7e-09 35.4 0.0 2.2e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PYST-C1 PF09690.5 gi|305663627|ref|YP_003859915.1| - 0.22 11.2 0.9 0.52 9.9 0.6 1.6 1 0 0 1 1 1 0 Plasmodium yoelii subtelomeric region (PYST-C1) DUF354 PF04007.7 gi|305663628|ref|YP_003859916.1| - 3.2e-52 177.4 3.9 3.7e-52 177.2 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF354) RNase_HII PF01351.13 gi|305663629|ref|YP_003859917.1| - 4.9e-46 156.8 0.0 5.7e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII Mut7-C PF01927.11 gi|305663630|ref|YP_003859918.1| - 6e-44 149.5 0.0 7.4e-44 149.2 0.0 1.1 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF164 PF02591.10 gi|305663630|ref|YP_003859918.1| - 0.047 13.5 1.1 6.1 6.7 0.1 2.4 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-4CXXC_R1 PF10497.4 gi|305663630|ref|YP_003859918.1| - 0.2 11.7 0.2 0.2 11.7 0.1 1.8 1 1 1 2 2 2 0 Zinc-finger domain of monoamine-oxidase A repressor R1 TF_Zn_Ribbon PF08271.7 gi|305663630|ref|YP_003859918.1| - 1.3 8.4 5.4 3.4 7.0 1.3 2.7 2 1 1 3 3 3 0 TFIIB zinc-binding AMMECR1 PF01871.12 gi|305663631|ref|YP_003859919.1| - 1e-56 190.7 0.0 1.3e-56 190.4 0.0 1.1 1 0 0 1 1 1 1 AMMECR1 dUTPase PF00692.14 gi|305663632|ref|YP_003859920.1| - 1.9e-16 59.7 0.0 2.9e-16 59.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|305663632|ref|YP_003859920.1| - 0.00017 20.1 0.0 0.0028 16.1 0.0 2.7 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DUF2383 PF09537.5 gi|305663633|ref|YP_003859921.1| - 2.2e-05 24.6 1.1 0.001 19.2 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Rubrerythrin PF02915.12 gi|305663633|ref|YP_003859921.1| - 0.00017 21.8 3.7 0.00029 21.1 2.1 1.7 1 1 0 1 1 1 1 Rubrerythrin dsDNA_bind PF01984.15 gi|305663633|ref|YP_003859921.1| - 0.041 13.8 4.5 0.51 10.3 0.8 2.3 2 0 0 2 2 2 0 Double-stranded DNA-binding domain Ferritin PF00210.19 gi|305663633|ref|YP_003859921.1| - 0.087 12.5 6.0 1.1 9.0 0.5 2.1 2 0 0 2 2 2 0 Ferritin-like domain Sin3_corepress PF08295.7 gi|305663633|ref|YP_003859921.1| - 0.15 11.8 1.5 2.4 7.9 0.1 2.5 2 0 0 2 2 2 0 Sin3 family co-repressor Flu_NS2 PF00601.14 gi|305663633|ref|YP_003859921.1| - 0.74 10.0 5.0 0.36 11.0 1.1 2.2 1 1 2 3 3 3 0 Influenza non-structural protein (NS2) Linocin_M18 PF04454.7 gi|305663634|ref|YP_003859922.1| - 7.7e-51 172.4 0.4 1.1e-50 171.9 0.3 1.2 1 0 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.12 gi|305663634|ref|YP_003859922.1| - 1.9e-09 37.9 0.3 3.3e-09 37.1 0.2 1.4 1 0 0 1 1 1 1 Rubrerythrin DUF2383 PF09537.5 gi|305663634|ref|YP_003859922.1| - 0.0019 18.4 0.2 0.004 17.3 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF2383) Ferritin PF00210.19 gi|305663634|ref|YP_003859922.1| - 0.026 14.2 0.2 0.065 12.9 0.0 1.8 2 0 0 2 2 2 0 Ferritin-like domain DUF2202 PF09968.4 gi|305663634|ref|YP_003859922.1| - 0.056 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) Ribosomal_S10 PF00338.17 gi|305663635|ref|YP_003859923.1| - 8.4e-32 108.8 0.2 9.4e-32 108.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|305663636|ref|YP_003859924.1| - 9.7e-55 184.9 0.0 1.4e-54 184.4 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|305663636|ref|YP_003859924.1| - 2.4e-28 98.1 0.0 6.1e-28 96.8 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|305663636|ref|YP_003859924.1| - 6.8e-18 64.5 1.8 6.8e-18 64.5 1.2 2.6 3 0 0 3 3 3 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|305663636|ref|YP_003859924.1| - 2.2e-08 33.6 1.4 6.5e-08 32.1 1.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|305663636|ref|YP_003859924.1| - 6e-08 32.6 0.1 1.9e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|305663636|ref|YP_003859924.1| - 0.0003 20.2 0.2 0.026 13.9 0.0 2.7 3 0 0 3 3 3 1 Ethanolamine utilisation - propanediol utilisation Miro PF08477.8 gi|305663636|ref|YP_003859924.1| - 0.0026 18.2 0.0 0.012 16.1 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|305663636|ref|YP_003859924.1| - 0.0035 17.1 0.1 2.6 7.8 0.0 2.3 1 1 1 2 2 2 2 Dynamin family SRPRB PF09439.5 gi|305663636|ref|YP_003859924.1| - 0.021 14.0 0.0 1.5 8.0 0.0 2.3 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Peptidase_M15_3 PF08291.6 gi|305663636|ref|YP_003859924.1| - 0.069 12.9 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Peptidase M15 ArgK PF03308.11 gi|305663636|ref|YP_003859924.1| - 0.74 8.5 4.2 4.7 5.8 0.4 3.3 3 1 1 4 4 4 0 ArgK protein Ribosomal_S7 PF00177.16 gi|305663637|ref|YP_003859925.1| - 1.1e-45 154.8 0.4 1.3e-45 154.6 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e Ribosom_S12_S23 PF00164.20 gi|305663638|ref|YP_003859926.1| - 4.4e-37 126.2 0.3 5e-37 126.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|305663639|ref|YP_003859927.1| - 9.4e-15 53.9 1.5 6e-09 35.3 0.1 2.2 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|305663639|ref|YP_003859927.1| - 9.1e-12 44.6 0.5 8.6e-11 41.4 0.0 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|305663639|ref|YP_003859927.1| - 8.7e-09 34.9 1.1 1.5e-05 24.5 0.0 2.5 2 1 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|305663639|ref|YP_003859927.1| - 0.00035 20.1 3.0 0.22 11.1 0.3 2.5 1 1 1 2 2 2 2 KH domain eIF3_p135 PF12807.2 gi|305663639|ref|YP_003859927.1| - 0.0064 16.4 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Translation initiation factor eIF3 subunit 135 Ribosomal_L7Ae PF01248.21 gi|305663640|ref|YP_003859928.1| - 2.1e-17 62.4 0.0 2.4e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family RNA_pol_Rpb1_5 PF04998.12 gi|305663641|ref|YP_003859929.1| - 3.5e-54 183.9 1.5 4.6e-54 183.5 1.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 FANCI_S1 PF14675.1 gi|305663641|ref|YP_003859929.1| - 0.0018 17.6 0.0 0.0055 16.0 0.0 1.8 2 0 0 2 2 2 1 FANCI solenoid 1 BEN PF10523.4 gi|305663641|ref|YP_003859929.1| - 0.087 12.8 0.4 3.7 7.6 0.0 2.4 2 0 0 2 2 2 0 BEN domain HMA PF00403.21 gi|305663641|ref|YP_003859929.1| - 0.19 11.8 2.5 4.3 7.5 0.2 3.1 1 1 1 2 2 2 0 Heavy-metal-associated domain DnaB_2 PF07261.6 gi|305663641|ref|YP_003859929.1| - 1.9 8.1 6.7 0.61 9.7 0.3 3.2 4 0 0 4 4 4 0 Replication initiation and membrane attachment RNA_pol_Rpb1_1 PF04997.7 gi|305663642|ref|YP_003859930.1| - 4.9e-93 312.0 0.0 7.6e-93 311.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|305663642|ref|YP_003859930.1| - 2e-68 229.5 0.0 4.1e-68 228.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.13 gi|305663642|ref|YP_003859930.1| - 3.9e-40 137.1 0.0 6.9e-40 136.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|305663642|ref|YP_003859930.1| - 3.6e-30 105.1 0.0 5.9e-30 104.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_4 PF05000.12 gi|305663642|ref|YP_003859930.1| - 1.5e-24 85.7 0.0 3.1e-24 84.7 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 zf-ribbon_3 PF13248.1 gi|305663642|ref|YP_003859930.1| - 0.00019 20.5 2.8 0.0084 15.2 0.1 3.1 2 1 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|305663642|ref|YP_003859930.1| - 0.085 12.6 1.7 11 5.8 0.0 2.5 2 1 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|305663642|ref|YP_003859930.1| - 0.45 10.5 5.0 0.88 9.5 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|305663642|ref|YP_003859930.1| - 0.68 9.5 7.1 2.1 7.9 0.3 3.2 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|305663642|ref|YP_003859930.1| - 2.3 8.1 6.3 7.8 6.3 0.1 3.0 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-IS66 PF13005.2 gi|305663642|ref|YP_003859930.1| - 6 6.9 7.6 49 4.0 0.0 3.6 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 RNA_pol_Rpb2_6 PF00562.23 gi|305663643|ref|YP_003859931.1| - 4.1e-126 420.8 0.0 5.7e-126 420.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.10 gi|305663643|ref|YP_003859931.1| - 7.7e-53 178.4 0.0 1.1e-52 177.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|305663643|ref|YP_003859931.1| - 4.4e-32 111.0 0.0 8.5e-32 110.1 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.15 gi|305663643|ref|YP_003859931.1| - 8.5e-27 93.2 0.0 1.9e-26 92.1 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.11 gi|305663643|ref|YP_003859931.1| - 1.5e-25 88.7 0.0 2.8e-25 87.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.8 gi|305663643|ref|YP_003859931.1| - 7.9e-19 67.2 1.6 1e-18 66.8 0.1 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|305663643|ref|YP_003859931.1| - 2.6e-13 49.6 0.6 5.9e-13 48.5 0.4 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 Dr_adhesin PF12393.3 gi|305663643|ref|YP_003859931.1| - 0.072 13.1 0.2 0.22 11.6 0.1 1.8 1 0 0 1 1 1 0 Dr family adhesin RNA_pol_Rpb5_C PF01191.14 gi|305663644|ref|YP_003859932.1| - 1.3e-30 104.7 0.0 1.5e-30 104.5 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain FeoA PF04023.9 gi|305663644|ref|YP_003859932.1| - 0.095 12.6 0.1 0.22 11.5 0.0 1.5 2 0 0 2 2 2 0 FeoA domain tRNA-synt_1g PF09334.6 gi|305663645|ref|YP_003859933.1| - 3.5e-106 355.1 0.7 6.8e-105 350.9 0.5 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|305663645|ref|YP_003859933.1| - 2.7e-29 101.6 0.1 1.9e-14 52.6 0.1 3.9 1 1 2 3 3 3 3 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|305663645|ref|YP_003859933.1| - 1e-14 54.3 0.5 1.6e-06 27.5 0.0 2.7 2 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|305663645|ref|YP_003859933.1| - 1.8e-06 27.7 0.2 4.2e-06 26.5 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|305663645|ref|YP_003859933.1| - 2e-06 26.7 0.0 6e-06 25.1 0.0 1.8 2 0 0 2 2 2 1 tRNA synthetases class I (K) DALR_1 PF05746.10 gi|305663645|ref|YP_003859933.1| - 0.1 12.5 1.2 0.48 10.3 0.1 2.6 3 0 0 3 3 3 0 DALR anticodon binding domain tRNA-synt_1b PF00579.20 gi|305663645|ref|YP_003859933.1| - 0.13 11.3 0.0 0.47 9.5 0.0 1.9 2 1 0 2 2 2 0 tRNA synthetases class I (W and Y) DUF4380 PF14315.1 gi|305663646|ref|YP_003859934.1| - 1.6e-59 201.3 0.0 2e-59 201.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4380) MFS_1 PF07690.11 gi|305663647|ref|YP_003859935.1| - 5.5e-13 48.3 40.9 5.5e-13 48.3 28.3 2.6 1 1 0 1 1 1 1 Major Facilitator Superfamily Peptidase_S49 PF01343.13 gi|305663647|ref|YP_003859935.1| - 0.53 10.0 3.7 1.5 8.5 0.0 2.2 2 0 0 2 2 2 0 Peptidase family S49 CytB6-F_Fe-S PF08802.5 gi|305663647|ref|YP_003859935.1| - 5.3 7.1 7.2 4.4 7.3 0.1 4.0 2 1 1 3 3 3 0 Cytochrome B6-F complex Fe-S subunit Frizzled PF01534.12 gi|305663648|ref|YP_003859936.1| - 0.034 12.9 0.5 0.041 12.6 0.3 1.2 1 0 0 1 1 1 0 Frizzled/Smoothened family membrane region DUF1614 PF07758.6 gi|305663648|ref|YP_003859936.1| - 0.052 13.2 2.0 0.072 12.8 1.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1614) PTS_EIIC PF02378.13 gi|305663648|ref|YP_003859936.1| - 6.2 5.5 9.4 1.4 7.6 1.6 2.4 1 1 0 2 2 2 0 Phosphotransferase system, EIIC Sulfate_tra_GLY PF13792.1 gi|305663650|ref|YP_003859938.1| - 0.059 13.0 0.3 0.083 12.5 0.2 1.2 1 0 0 1 1 1 0 Sulfate transporter N-terminal domain with GLY motif Raffinose_syn PF05691.7 gi|305663650|ref|YP_003859938.1| - 0.061 10.8 0.1 0.067 10.7 0.0 1.0 1 0 0 1 1 1 0 Raffinose synthase or seed imbibition protein Sip1 DUF4429 PF14472.1 gi|305663652|ref|YP_003859940.1| - 0.064 13.5 0.0 0.092 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4429) Abi PF02517.11 gi|305663652|ref|YP_003859940.1| - 0.25 11.5 1.7 0.34 11.0 1.2 1.2 1 0 0 1 1 1 0 CAAX protease self-immunity RseC_MucC PF04246.7 gi|305663652|ref|YP_003859940.1| - 0.76 9.3 3.7 1.2 8.7 2.6 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF3951 PF13131.1 gi|305663652|ref|YP_003859940.1| - 2.3 8.0 10.2 1.2 8.9 5.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3951) DUF4191 PF13829.1 gi|305663652|ref|YP_003859940.1| - 2.6 7.0 4.4 3.5 6.6 3.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF996 PF06195.8 gi|305663653|ref|YP_003859941.1| - 3.3e-14 53.0 17.7 3.3e-14 53.0 12.3 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF996) DUF2955 PF11168.3 gi|305663653|ref|YP_003859941.1| - 0.029 14.0 0.1 0.029 14.0 0.0 2.8 3 1 0 2 2 2 0 Protein of unknown function (DUF2955) PIRT PF15099.1 gi|305663653|ref|YP_003859941.1| - 0.67 9.1 2.8 0.84 8.8 0.1 2.2 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family CobD_Cbib PF03186.8 gi|305663653|ref|YP_003859941.1| - 1.1 8.3 5.8 0.66 8.9 0.2 2.1 2 0 0 2 2 2 0 CobD/Cbib protein Peptidase_M50 PF02163.17 gi|305663654|ref|YP_003859942.1| - 0.67 8.8 11.3 17 4.3 7.8 2.8 1 1 0 1 1 1 0 Peptidase family M50 IncA PF04156.9 gi|305663654|ref|YP_003859942.1| - 1.1 8.7 0.0 1.1 8.7 0.0 8.3 8 1 2 10 10 10 0 IncA protein ExbD PF02472.11 gi|305663654|ref|YP_003859942.1| - 3 7.8 7.6 0.19 11.7 1.0 2.2 3 0 0 3 3 3 0 Biopolymer transport protein ExbD/TolR Uso1_p115_head PF04869.9 gi|305663658|ref|YP_003859946.1| - 0.014 14.1 0.3 0.016 13.9 0.2 1.1 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, head region zf-C2H2_4 PF13894.1 gi|305663659|ref|YP_003859947.1| - 0.00032 20.8 0.2 0.00089 19.4 0.2 1.7 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|305663659|ref|YP_003859947.1| - 0.0025 18.0 0.2 0.0087 16.3 0.1 2.0 1 0 0 1 1 1 1 Zinc finger, C2H2 type Mut7-C PF01927.11 gi|305663659|ref|YP_003859947.1| - 0.0067 16.3 0.6 0.009 15.9 0.4 1.3 1 0 0 1 1 1 1 Mut7-C RNAse domain zf-met PF12874.2 gi|305663659|ref|YP_003859947.1| - 0.035 14.3 0.3 0.079 13.1 0.2 1.7 1 0 0 1 1 1 0 Zinc-finger of C2H2 type DUF1068 PF06364.7 gi|305663659|ref|YP_003859947.1| - 0.057 13.0 0.3 0.097 12.2 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1068) zf-MIZ PF02891.15 gi|305663659|ref|YP_003859947.1| - 0.065 12.7 2.1 0.15 11.5 1.5 1.7 1 0 0 1 1 1 0 MIZ/SP-RING zinc finger zf-C2H2_jaz PF12171.3 gi|305663659|ref|YP_003859947.1| - 0.1 12.7 1.7 0.26 11.4 1.2 1.7 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding ThiI PF02568.9 gi|305663660|ref|YP_003859948.1| - 1.8e-62 210.2 0.0 3.1e-62 209.5 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|305663660|ref|YP_003859948.1| - 5.4e-22 78.2 0.3 1.2e-21 77.0 0.1 1.7 2 0 0 2 2 2 1 THUMP domain QueC PF06508.8 gi|305663660|ref|YP_003859948.1| - 3.4e-06 26.5 0.0 0.00076 18.8 0.0 2.4 2 0 0 2 2 2 2 Queuosine biosynthesis protein QueC ATP_bind_4 PF01902.12 gi|305663660|ref|YP_003859948.1| - 0.018 14.4 0.0 0.056 12.8 0.0 1.9 1 0 0 1 1 1 0 ATP-binding region tRNA_Me_trans PF03054.11 gi|305663660|ref|YP_003859948.1| - 0.022 13.3 0.1 0.036 12.6 0.1 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|305663660|ref|YP_003859948.1| - 0.12 11.8 0.1 2.6 7.4 0.0 2.5 3 0 0 3 3 3 0 PP-loop family DUF2029 PF09594.5 gi|305663661|ref|YP_003859949.1| - 1.1e-07 31.6 11.6 1.9e-07 30.8 8.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2029) GFO_IDH_MocA PF01408.17 gi|305663662|ref|YP_003859950.1| - 3.7e-20 72.6 0.1 7.1e-20 71.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|305663662|ref|YP_003859950.1| - 2.2e-05 24.7 0.0 3.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|305663662|ref|YP_003859950.1| - 0.00025 21.4 0.1 0.00055 20.3 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA_C PF02894.12 gi|305663662|ref|YP_003859950.1| - 0.0025 17.5 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain DapB_N PF01113.15 gi|305663662|ref|YP_003859950.1| - 0.006 16.4 0.7 0.011 15.6 0.2 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus PDH PF02153.12 gi|305663662|ref|YP_003859950.1| - 0.0091 14.9 0.3 0.015 14.2 0.2 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase IlvN PF07991.7 gi|305663662|ref|YP_003859950.1| - 0.1 11.9 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain DUF3662 PF12401.3 gi|305663662|ref|YP_003859950.1| - 0.13 12.4 0.1 0.3 11.2 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2662) NAD_Gly3P_dh_N PF01210.18 gi|305663662|ref|YP_003859950.1| - 0.96 9.1 3.6 20 4.8 2.5 2.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Zn_Tnp_IS1595 PF12760.2 gi|305663663|ref|YP_003859951.1| - 1.2e-09 37.8 3.2 2.2e-07 30.5 1.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TFIIS_C PF01096.13 gi|305663663|ref|YP_003859951.1| - 4.1e-08 32.7 5.1 4.7e-07 29.3 0.8 2.4 2 1 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.5 gi|305663663|ref|YP_003859951.1| - 5.9e-06 26.1 2.6 0.88 9.5 0.0 3.3 3 0 0 3 3 3 1 Zinc ribbon domain UPF0547 PF10571.4 gi|305663663|ref|YP_003859951.1| - 4.2e-05 23.1 8.7 0.01 15.5 0.1 3.2 3 0 0 3 3 3 2 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|305663663|ref|YP_003859951.1| - 7.5e-05 21.7 5.8 0.47 9.7 0.1 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|305663663|ref|YP_003859951.1| - 0.00013 21.9 8.5 0.11 12.5 0.3 3.2 3 0 0 3 3 3 2 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF3797 PF12677.2 gi|305663663|ref|YP_003859951.1| - 0.00024 20.6 1.6 2.5 7.7 0.0 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) zf-ZPR1 PF03367.8 gi|305663663|ref|YP_003859951.1| - 0.00056 19.1 1.1 0.048 12.8 0.3 2.3 2 1 0 2 2 2 1 ZPR1 zinc-finger domain DNA_RNApol_7kD PF03604.8 gi|305663663|ref|YP_003859951.1| - 0.00059 19.2 6.0 0.76 9.3 0.1 3.3 3 0 0 3 3 3 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|305663663|ref|YP_003859951.1| - 0.00075 18.9 10.6 0.71 9.4 0.0 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|305663663|ref|YP_003859951.1| - 0.00084 19.1 2.5 0.19 11.5 0.5 2.7 2 1 0 2 2 2 1 Double zinc ribbon zf-H2C2_2 PF13465.1 gi|305663663|ref|YP_003859951.1| - 0.0013 18.9 5.1 1.4 9.3 0.1 3.3 3 0 0 3 3 3 1 Zinc-finger double domain HypA PF01155.14 gi|305663663|ref|YP_003859951.1| - 0.0016 18.0 0.9 0.15 11.7 0.0 2.4 1 1 1 2 2 2 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|305663663|ref|YP_003859951.1| - 0.0033 17.0 5.0 1.4 8.6 2.1 2.9 2 1 1 3 3 3 1 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|305663663|ref|YP_003859951.1| - 0.0045 16.5 6.1 4.7 6.8 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|305663663|ref|YP_003859951.1| - 0.0052 16.4 6.3 4.7 6.9 0.0 3.2 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|305663663|ref|YP_003859951.1| - 0.0055 16.5 4.2 0.14 12.0 0.0 2.7 2 1 0 2 2 2 1 Probable metal-binding protein (DUF2387) zinc_ribbon_4 PF13717.1 gi|305663663|ref|YP_003859951.1| - 0.0057 16.3 6.4 6 6.6 0.2 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|305663663|ref|YP_003859951.1| - 0.0065 16.3 6.5 3.2 7.6 0.6 3.2 3 0 0 3 3 3 0 Rubredoxin Terminase_GpA PF05876.7 gi|305663663|ref|YP_003859951.1| - 0.0085 14.5 1.6 0.025 12.9 0.7 1.8 2 0 0 2 2 2 1 Phage terminase large subunit (GpA) PhnA_Zn_Ribbon PF08274.7 gi|305663663|ref|YP_003859951.1| - 0.011 15.4 10.3 0.46 10.3 3.9 3.0 2 1 1 3 3 3 0 PhnA Zinc-Ribbon Nudix_N_2 PF14803.1 gi|305663663|ref|YP_003859951.1| - 0.015 14.9 6.7 2.1 8.0 0.2 3.2 3 0 0 3 3 3 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|305663663|ref|YP_003859951.1| - 0.02 15.1 4.1 0.095 13.0 0.3 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|305663663|ref|YP_003859951.1| - 0.023 14.3 1.9 1.9 8.2 0.0 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Ogr_Delta PF04606.7 gi|305663663|ref|YP_003859951.1| - 0.024 14.2 6.2 0.28 10.8 2.1 2.8 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.14 gi|305663663|ref|YP_003859951.1| - 0.029 13.8 4.5 1.7 8.1 0.1 2.6 3 0 0 3 3 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|305663663|ref|YP_003859951.1| - 0.036 13.3 5.5 6.1 6.2 0.2 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding IBR PF01485.16 gi|305663663|ref|YP_003859951.1| - 0.041 13.7 2.5 1.2 9.0 1.7 2.3 1 1 0 1 1 1 0 IBR domain DUF164 PF02591.10 gi|305663663|ref|YP_003859951.1| - 0.055 13.3 4.2 11 5.9 0.1 3.1 3 0 0 3 3 3 0 Putative zinc ribbon domain Baculo_ME53 PF06061.6 gi|305663663|ref|YP_003859951.1| - 0.056 12.4 2.5 2 7.3 0.0 2.4 2 1 0 2 2 2 0 Baculoviridae ME53 NOB1_Zn_bind PF08772.6 gi|305663663|ref|YP_003859951.1| - 0.061 13.1 0.4 6.5 6.6 0.0 2.9 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf-TFIIB PF13453.1 gi|305663663|ref|YP_003859951.1| - 0.079 12.1 9.2 0.19 10.9 0.1 3.0 2 1 0 2 2 2 0 Transcription factor zinc-finger A2L_zn_ribbon PF08792.5 gi|305663663|ref|YP_003859951.1| - 0.11 11.9 7.4 1.8 8.1 0.1 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain Desulfoferrod_N PF06397.7 gi|305663663|ref|YP_003859951.1| - 0.11 11.8 0.9 0.11 11.8 0.6 2.9 3 0 0 3 3 3 0 Desulfoferrodoxin, N-terminal domain zf-RING_3 PF14369.1 gi|305663663|ref|YP_003859951.1| - 0.12 12.3 2.9 3 7.9 0.1 3.0 3 0 0 3 3 3 0 zinc-finger zf-trcl PF13451.1 gi|305663663|ref|YP_003859951.1| - 0.12 11.9 2.1 5.1 6.8 1.0 2.9 2 1 0 2 2 2 0 Probable zinc-binding domain zf-Mss51 PF13824.1 gi|305663663|ref|YP_003859951.1| - 0.13 12.1 5.4 21 5.0 1.9 3.1 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RecR PF02132.10 gi|305663663|ref|YP_003859951.1| - 0.13 11.7 4.3 7.4 6.0 0.1 3.2 3 0 0 3 3 3 0 RecR protein Ribosomal_S27 PF01599.14 gi|305663663|ref|YP_003859951.1| - 0.16 11.8 2.8 1.5 8.7 0.0 2.9 3 0 0 3 3 3 0 Ribosomal protein S27a Ribosomal_S27e PF01667.12 gi|305663663|ref|YP_003859951.1| - 0.16 11.5 3.3 18 4.9 0.0 3.3 3 1 0 3 3 3 0 Ribosomal protein S27 Elf1 PF05129.8 gi|305663663|ref|YP_003859951.1| - 0.19 11.4 3.6 2.7 7.7 0.0 3.0 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like YhfH PF14149.1 gi|305663663|ref|YP_003859951.1| - 0.25 11.1 5.2 13 5.6 0.0 3.2 3 0 0 3 3 3 0 YhfH-like protein CpXC PF14353.1 gi|305663663|ref|YP_003859951.1| - 0.26 11.2 3.3 17 5.3 1.4 2.8 2 1 0 2 2 2 0 CpXC protein Ribosomal_L32p PF01783.18 gi|305663663|ref|YP_003859951.1| - 0.34 11.1 6.7 8.2 6.6 0.0 3.1 2 1 1 3 3 3 0 Ribosomal L32p protein family Auto_anti-p27 PF06677.7 gi|305663663|ref|YP_003859951.1| - 0.35 10.6 6.9 4.1 7.2 0.0 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.6 gi|305663663|ref|YP_003859951.1| - 0.36 10.3 6.9 8.2 6.0 0.2 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Rpr2 PF04032.11 gi|305663663|ref|YP_003859951.1| - 0.54 10.1 5.5 2.7 7.9 3.8 2.1 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain FdhE PF04216.7 gi|305663663|ref|YP_003859951.1| - 0.56 9.8 2.0 1.5 8.4 0.4 1.9 2 0 0 2 2 2 0 Protein involved in formate dehydrogenase formation DUF1936 PF09151.5 gi|305663663|ref|YP_003859951.1| - 0.66 9.5 12.9 4.9 6.7 0.1 4.0 3 1 0 3 3 3 0 Domain of unknown function (DUF1936) zf-IS66 PF13005.2 gi|305663663|ref|YP_003859951.1| - 0.72 9.8 6.1 21 5.1 0.1 3.2 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 DUF2072 PF09845.4 gi|305663663|ref|YP_003859951.1| - 0.89 9.4 4.8 10 6.0 0.8 2.6 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF35_N PF12172.3 gi|305663663|ref|YP_003859951.1| - 0.92 9.4 4.6 14 5.7 0.0 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) ADK_lid PF05191.9 gi|305663663|ref|YP_003859951.1| - 1.1 8.9 5.4 4.7 6.9 0.3 3.0 3 0 0 3 3 3 0 Adenylate kinase, active site lid DUF2082 PF09855.4 gi|305663663|ref|YP_003859951.1| - 1.1 9.1 9.1 18 5.2 0.1 3.1 2 1 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_ribbon_recom PF13408.1 gi|305663663|ref|YP_003859951.1| - 1.5 9.1 9.4 2.8 8.2 4.4 2.3 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-HYPF PF07503.7 gi|305663663|ref|YP_003859951.1| - 2 7.9 6.1 32 4.0 0.2 3.1 3 0 0 3 3 3 0 HypF finger zf-HIT PF04438.11 gi|305663663|ref|YP_003859951.1| - 2.1 8.0 9.4 15 5.3 0.2 3.1 3 0 0 3 3 3 0 HIT zinc finger VP_N-CPKC PF11475.3 gi|305663663|ref|YP_003859951.1| - 2.2 7.9 4.4 8 6.0 0.3 2.3 2 0 0 2 2 2 0 Virion protein N terminal domain DUF2225 PF09986.4 gi|305663663|ref|YP_003859951.1| - 2.7 7.3 6.6 6.4 6.1 0.2 2.9 2 1 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2 PF00096.21 gi|305663663|ref|YP_003859951.1| - 3.2 8.2 10.6 40 4.8 0.1 3.4 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.1 gi|305663663|ref|YP_003859951.1| - 3.9 8.0 7.0 50 4.5 0.0 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger MMR_HSR1 PF01926.18 gi|305663664|ref|YP_003859952.1| - 5.4e-14 52.1 0.1 2.5e-11 43.5 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|305663664|ref|YP_003859952.1| - 2e-06 27.2 0.1 7.3e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|305663664|ref|YP_003859952.1| - 3.3e-06 27.0 3.7 0.2 11.4 0.0 3.2 2 1 1 3 3 3 3 Dynamin family DUF258 PF03193.11 gi|305663664|ref|YP_003859952.1| - 1.3e-05 24.4 0.0 2.4e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|305663664|ref|YP_003859952.1| - 0.016 15.7 0.0 0.5 10.8 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein GTP_EFTU PF00009.22 gi|305663664|ref|YP_003859952.1| - 0.031 13.7 0.4 0.15 11.4 0.1 2.1 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain tRNA_m1G_MT PF01746.16 gi|305663665|ref|YP_003859953.1| - 6.2e-09 35.7 0.0 1e-08 34.9 0.0 1.4 1 1 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase RNA_Me_trans PF04252.8 gi|305663665|ref|YP_003859953.1| - 5.3e-05 22.7 0.2 9.2e-05 21.9 0.0 1.6 2 0 0 2 2 2 1 Predicted SAM-dependent RNA methyltransferase HTH_20 PF12840.2 gi|305663666|ref|YP_003859954.1| - 0.012 15.4 0.0 0.029 14.1 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain TruD PF01142.13 gi|305663666|ref|YP_003859954.1| - 0.018 13.7 0.0 0.021 13.5 0.0 1.0 1 0 0 1 1 1 0 tRNA pseudouridine synthase D (TruD) DUF2250 PF10007.4 gi|305663666|ref|YP_003859954.1| - 0.05 13.5 0.1 6.1 6.8 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|305663666|ref|YP_003859954.1| - 0.053 13.3 0.0 0.074 12.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.14 gi|305663666|ref|YP_003859954.1| - 0.072 12.8 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Ribosomal_L15e PF00827.12 gi|305663668|ref|YP_003859956.1| - 3.1e-78 261.6 6.8 3.9e-78 261.3 4.7 1.2 1 0 0 1 1 1 1 Ribosomal L15 MMR_HSR1_C PF08438.5 gi|305663669|ref|YP_003859957.1| - 1e-27 96.5 0.0 1.7e-27 95.7 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|305663669|ref|YP_003859957.1| - 9.7e-19 67.4 0.0 2e-18 66.4 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|305663669|ref|YP_003859957.1| - 3.1e-13 49.3 0.0 7.9e-13 48.0 0.0 1.7 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|305663669|ref|YP_003859957.1| - 1.3e-06 27.7 0.0 0.001 18.3 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|305663669|ref|YP_003859957.1| - 0.00017 21.4 0.5 0.0049 16.6 0.0 2.6 2 1 0 3 3 3 1 Dynamin family YchF-GTPase_C PF06071.8 gi|305663669|ref|YP_003859957.1| - 0.00021 21.0 0.1 0.33 10.7 0.0 2.4 1 1 1 2 2 2 2 Protein of unknown function (DUF933) GTP_EFTU PF00009.22 gi|305663669|ref|YP_003859957.1| - 0.00072 19.0 0.1 1 8.7 0.0 2.8 2 1 0 2 2 2 2 Elongation factor Tu GTP binding domain BID PF06393.6 gi|305663669|ref|YP_003859957.1| - 0.026 13.8 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 BH3 interacting domain (BID) RNA_binding PF01877.12 gi|305663670|ref|YP_003859958.1| - 2.2e-32 111.5 0.2 2.9e-32 111.1 0.1 1.2 1 0 0 1 1 1 1 RNA binding DUF4003 PF13170.1 gi|305663670|ref|YP_003859958.1| - 0.016 14.5 1.3 0.022 14.0 0.7 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4003) OSR1_C PF12202.3 gi|305663670|ref|YP_003859958.1| - 0.041 13.5 0.1 0.091 12.4 0.0 1.5 1 0 0 1 1 1 0 Oxidative-stress-responsive kinase 1 C terminal SPOB_a PF14689.1 gi|305663670|ref|YP_003859958.1| - 0.35 10.4 2.5 0.79 9.3 0.0 2.6 3 0 0 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain RNase_P_Rpp14 PF01900.14 gi|305663672|ref|YP_003859960.1| - 1.2e-05 25.1 0.6 1.9e-05 24.5 0.4 1.3 1 0 0 1 1 1 1 Rpp14/Pop5 family Pex24p PF06398.6 gi|305663672|ref|YP_003859960.1| - 0.055 12.2 0.8 0.059 12.1 0.6 1.0 1 0 0 1 1 1 0 Integral peroxisomal membrane peroxin PadR PF03551.9 gi|305663673|ref|YP_003859961.1| - 2.2e-06 27.3 1.3 2.8e-06 26.9 0.2 1.7 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|305663673|ref|YP_003859961.1| - 0.00064 19.9 0.1 0.0013 19.0 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|305663673|ref|YP_003859961.1| - 0.001 18.7 0.8 0.0047 16.6 0.1 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB FUR PF01475.14 gi|305663673|ref|YP_003859961.1| - 0.0015 18.4 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family Penicillinase_R PF03965.11 gi|305663673|ref|YP_003859961.1| - 0.021 14.9 0.0 0.03 14.3 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor DUF4364 PF14277.1 gi|305663673|ref|YP_003859961.1| - 0.043 13.4 0.2 0.97 9.0 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) PaaX PF07848.7 gi|305663673|ref|YP_003859961.1| - 0.088 12.8 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein NAD_binding_5 PF07994.7 gi|305663674|ref|YP_003859962.1| - 4e-43 148.0 0.0 1.3e-42 146.2 0.0 1.7 1 1 0 1 1 1 1 Myo-inositol-1-phosphate synthase Inos-1-P_synth PF01658.12 gi|305663674|ref|YP_003859962.1| - 5.1e-25 87.4 0.0 8.2e-25 86.8 0.0 1.3 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase UPF0020 PF01170.13 gi|305663675|ref|YP_003859963.1| - 5e-35 120.6 0.0 8.1e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 THUMP PF02926.12 gi|305663675|ref|YP_003859963.1| - 8.9e-19 67.7 0.1 2.1e-18 66.6 0.0 1.7 1 0 0 1 1 1 1 THUMP domain Methyltransf_26 PF13659.1 gi|305663675|ref|YP_003859963.1| - 9.4e-10 38.5 0.0 2.3e-09 37.3 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663675|ref|YP_003859963.1| - 1.4e-06 27.9 0.2 0.0085 15.6 0.0 2.5 1 1 1 2 2 2 2 Methyltransferase domain Radical_SAM PF04055.16 gi|305663675|ref|YP_003859963.1| - 0.017 15.2 0.1 0.1 12.7 0.0 2.4 2 2 1 3 3 3 0 Radical SAM superfamily Methyltransf_15 PF09445.5 gi|305663675|ref|YP_003859963.1| - 0.049 13.1 0.1 1.6 8.2 0.0 2.4 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|305663675|ref|YP_003859963.1| - 0.15 12.6 0.0 25 5.4 0.0 2.5 1 1 1 2 2 2 0 Methyltransferase domain Aldolase_II PF00596.16 gi|305663678|ref|YP_003859966.1| - 1.1e-51 175.1 0.0 1.2e-51 174.9 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain WaaY PF06176.6 gi|305663678|ref|YP_003859966.1| - 0.012 14.8 0.1 0.019 14.1 0.1 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Phage_integrase PF00589.17 gi|305663679|ref|YP_003859967.1| - 2.8e-36 124.7 0.0 4.3e-36 124.1 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|305663679|ref|YP_003859967.1| - 7.4e-10 38.8 2.1 1.4e-08 34.7 0.4 2.8 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|305663679|ref|YP_003859967.1| - 9e-09 35.5 0.1 0.00015 22.0 0.0 2.7 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain zf-ribbon_3 PF13248.1 gi|305663679|ref|YP_003859967.1| - 1.9e-08 33.2 4.7 3.1e-08 32.5 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305663679|ref|YP_003859967.1| - 1.2e-07 30.9 3.0 1.8e-07 30.4 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|305663679|ref|YP_003859967.1| - 2.3e-06 27.3 1.5 3.7e-06 26.6 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|305663679|ref|YP_003859967.1| - 5.8e-06 25.8 4.0 1e-05 25.0 2.8 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Integrase_1 PF12835.2 gi|305663679|ref|YP_003859967.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.3 1 0 0 1 1 1 1 Integrase zf-NADH-PPase PF09297.6 gi|305663679|ref|YP_003859967.1| - 0.14 11.6 7.1 0.12 11.9 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|305663679|ref|YP_003859967.1| - 0.42 10.3 3.8 8.7 6.1 1.5 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF329 PF03884.9 gi|305663679|ref|YP_003859967.1| - 0.45 10.1 3.3 1 8.9 2.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF329) HemN_C PF06969.11 gi|305663680|ref|YP_003859968.1| - 0.027 14.5 0.2 0.046 13.7 0.2 1.4 1 0 0 1 1 1 0 HemN C-terminal domain PHD PF00628.24 gi|305663681|ref|YP_003859969.1| - 0.11 12.1 0.7 0.22 11.2 0.4 1.7 1 1 0 1 1 1 0 PHD-finger eRF1_2 PF03464.10 gi|305663682|ref|YP_003859970.1| - 1.9e-36 125.3 0.4 3.3e-36 124.5 0.3 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|305663682|ref|YP_003859970.1| - 1.5e-16 60.6 0.3 2e-14 53.7 0.1 3.1 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|305663682|ref|YP_003859970.1| - 2.9e-14 52.7 0.0 4.9e-14 52.0 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 SpoU_sub_bind PF08032.7 gi|305663682|ref|YP_003859970.1| - 0.002 18.2 0.4 0.0086 16.2 0.0 2.3 3 0 0 3 3 3 1 RNA 2'-O ribose methyltransferase substrate binding KorB PF08535.5 gi|305663683|ref|YP_003859971.1| - 0.0014 18.7 0.1 0.0096 16.0 0.0 2.2 2 0 0 2 2 2 1 KorB domain HTH_5 PF01022.15 gi|305663683|ref|YP_003859971.1| - 0.0029 17.2 0.0 0.0089 15.6 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_45 PF14947.1 gi|305663683|ref|YP_003859971.1| - 0.0055 16.4 2.0 0.033 13.9 0.0 2.6 2 1 1 3 3 3 1 Winged helix-turn-helix Rrf2 PF02082.15 gi|305663683|ref|YP_003859971.1| - 0.011 15.8 0.2 1.7 8.8 0.0 2.6 2 0 0 2 2 2 0 Transcriptional regulator TrmB PF01978.14 gi|305663683|ref|YP_003859971.1| - 0.11 12.1 1.1 5.8 6.7 0.1 2.8 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB S10_plectin PF03501.10 gi|305663683|ref|YP_003859971.1| - 0.15 11.9 2.5 0.76 9.6 0.1 2.6 2 1 0 2 2 2 0 Plectin/S10 domain PCMT PF01135.14 gi|305663684|ref|YP_003859972.1| - 3.3e-69 232.6 0.0 3.8e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.1 gi|305663684|ref|YP_003859972.1| - 1.7e-08 34.1 0.0 3.7e-08 33.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain GCD14 PF08704.5 gi|305663684|ref|YP_003859972.1| - 3.4e-06 26.7 0.0 5.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|305663684|ref|YP_003859972.1| - 4.1e-05 24.1 0.0 6.2e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.12 gi|305663684|ref|YP_003859972.1| - 0.00035 19.5 0.0 0.00053 18.9 0.0 1.1 1 0 0 1 1 1 1 Fibrillarin Methyltransf_24 PF13578.1 gi|305663684|ref|YP_003859972.1| - 0.034 14.9 0.0 0.057 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.15 gi|305663684|ref|YP_003859972.1| - 0.041 12.8 0.0 0.061 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|305663684|ref|YP_003859972.1| - 0.044 13.4 0.0 0.058 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305663684|ref|YP_003859972.1| - 0.051 13.2 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305663684|ref|YP_003859972.1| - 0.058 13.4 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|305663684|ref|YP_003859972.1| - 0.091 11.8 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF371 PF04027.8 gi|305663685|ref|YP_003859973.1| - 1.5e-40 137.8 0.1 1.8e-40 137.6 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF371) DUF2204 PF09970.4 gi|305663685|ref|YP_003859973.1| - 0.0054 16.2 0.7 0.0072 15.8 0.5 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) DUF4318 PF14201.1 gi|305663685|ref|YP_003859973.1| - 0.0093 15.7 0.0 4.6 7.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4318) Met_10 PF02475.11 gi|305663686|ref|YP_003859974.1| - 1.4e-45 155.3 0.4 2.4e-45 154.6 0.3 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|305663686|ref|YP_003859974.1| - 7.1e-11 41.7 0.0 1.5e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|305663686|ref|YP_003859974.1| - 8.2e-09 35.2 0.2 1.8e-08 34.0 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305663686|ref|YP_003859974.1| - 5.2e-07 29.7 0.0 9.9e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|305663686|ref|YP_003859974.1| - 4.4e-06 26.0 0.1 6.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|305663686|ref|YP_003859974.1| - 1.9e-05 25.1 0.0 5e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|305663686|ref|YP_003859974.1| - 0.0021 17.6 0.0 0.0044 16.6 0.0 1.6 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase FmrO PF07091.6 gi|305663686|ref|YP_003859974.1| - 0.0023 16.9 0.0 0.0043 16.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) TehB PF03848.9 gi|305663686|ref|YP_003859974.1| - 0.0075 15.4 0.1 0.013 14.7 0.1 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB Cons_hypoth95 PF03602.10 gi|305663686|ref|YP_003859974.1| - 0.0092 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.13 gi|305663686|ref|YP_003859974.1| - 0.051 13.1 0.0 0.1 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|305663686|ref|YP_003859974.1| - 0.058 13.8 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DNA_methylase PF00145.12 gi|305663686|ref|YP_003859974.1| - 0.11 11.6 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase NAD_kinase PF01513.16 gi|305663687|ref|YP_003859975.1| - 8e-43 146.2 0.6 9.7e-43 145.9 0.4 1.2 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|305663687|ref|YP_003859975.1| - 0.022 14.2 0.1 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PIN PF01850.16 gi|305663688|ref|YP_003859976.1| - 1.2e-05 25.5 0.2 3.3e-05 24.2 0.2 1.6 1 1 0 1 1 1 1 PIN domain Nol1_Nop2_Fmu PF01189.12 gi|305663689|ref|YP_003859977.1| - 4.3e-40 137.8 0.0 7.1e-40 137.1 0.0 1.3 1 0 0 1 1 1 1 NOL1/NOP2/sun family PUA PF01472.15 gi|305663689|ref|YP_003859977.1| - 3.2e-18 65.2 1.8 8.1e-18 63.9 1.3 1.8 1 0 0 1 1 1 1 PUA domain Methyltransf_26 PF13659.1 gi|305663689|ref|YP_003859977.1| - 0.00014 21.9 0.0 0.0009 19.2 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663689|ref|YP_003859977.1| - 0.00078 19.0 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|305663689|ref|YP_003859977.1| - 0.068 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 KaiC PF06745.8 gi|305663690|ref|YP_003859978.1| - 2e-34 118.7 0.2 3.8e-34 117.7 0.1 1.4 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|305663690|ref|YP_003859978.1| - 1.1e-12 47.8 0.0 2.1e-12 46.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|305663690|ref|YP_003859978.1| - 2.9e-08 32.4 0.2 6e-08 31.4 0.1 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|305663690|ref|YP_003859978.1| - 1e-05 24.5 0.0 6.6e-05 21.9 0.0 2.1 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_17 PF13207.1 gi|305663690|ref|YP_003859978.1| - 1.2e-05 26.1 0.0 0.00047 20.9 0.0 3.0 2 2 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|305663690|ref|YP_003859978.1| - 2.2e-05 24.8 0.0 0.00012 22.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663690|ref|YP_003859978.1| - 0.00013 22.1 0.0 0.0022 18.2 0.0 2.7 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|305663690|ref|YP_003859978.1| - 0.00026 20.4 0.0 0.00047 19.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_31 PF13614.1 gi|305663690|ref|YP_003859978.1| - 0.00029 20.7 0.1 0.0059 16.5 0.0 2.8 3 1 0 3 3 3 1 AAA domain AAA_19 PF13245.1 gi|305663690|ref|YP_003859978.1| - 0.00047 19.8 0.0 0.0012 18.5 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|305663690|ref|YP_003859978.1| - 0.00049 19.9 0.3 0.0018 18.1 0.0 2.2 2 1 0 2 2 2 1 AAA domain KTI12 PF08433.5 gi|305663690|ref|YP_003859978.1| - 0.0011 18.1 0.0 0.0027 16.9 0.0 1.5 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_35 PF14516.1 gi|305663690|ref|YP_003859978.1| - 0.0012 17.5 0.0 0.0027 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA-like domain AAA_10 PF12846.2 gi|305663690|ref|YP_003859978.1| - 0.0021 17.5 0.0 0.0046 16.4 0.0 1.7 1 0 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|305663690|ref|YP_003859978.1| - 0.0022 18.1 0.0 0.007 16.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain Rad51 PF08423.6 gi|305663690|ref|YP_003859978.1| - 0.0029 16.5 0.0 0.011 14.7 0.0 1.8 2 0 0 2 2 2 1 Rad51 AAA_33 PF13671.1 gi|305663690|ref|YP_003859978.1| - 0.0031 17.3 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|305663690|ref|YP_003859978.1| - 0.0041 16.7 0.2 0.02 14.4 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663690|ref|YP_003859978.1| - 0.0055 17.0 1.9 0.085 13.1 0.1 2.8 2 1 0 2 2 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|305663690|ref|YP_003859978.1| - 0.0065 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family UPF0079 PF02367.12 gi|305663690|ref|YP_003859978.1| - 0.014 14.9 0.2 0.04 13.5 0.0 1.9 2 0 0 2 2 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|305663690|ref|YP_003859978.1| - 0.015 14.9 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|305663690|ref|YP_003859978.1| - 0.016 15.4 0.0 0.03 14.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.17 gi|305663690|ref|YP_003859978.1| - 0.02 13.7 0.0 0.043 12.6 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|305663690|ref|YP_003859978.1| - 0.025 13.6 0.0 0.044 12.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin ATP_bind_1 PF03029.12 gi|305663690|ref|YP_003859978.1| - 0.029 13.9 0.0 0.27 10.7 0.0 2.3 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.17 gi|305663690|ref|YP_003859978.1| - 0.042 14.0 0.1 0.21 11.7 0.0 2.2 2 0 0 2 2 2 0 RNA helicase T2SE PF00437.15 gi|305663690|ref|YP_003859978.1| - 0.044 12.6 0.0 0.074 11.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|305663690|ref|YP_003859978.1| - 0.074 12.0 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|305663690|ref|YP_003859978.1| - 0.081 12.9 0.0 0.13 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|305663690|ref|YP_003859978.1| - 0.1 12.2 0.1 0.25 11.0 0.1 1.8 1 1 0 1 1 1 0 NTPase MobB PF03205.9 gi|305663690|ref|YP_003859978.1| - 0.11 12.2 0.1 0.52 10.0 0.0 2.2 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|305663690|ref|YP_003859978.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2205 PF10224.4 gi|305663691|ref|YP_003859979.1| - 0.0084 15.6 1.2 0.0094 15.5 0.9 1.1 1 0 0 1 1 1 1 Predicted coiled-coil protein (DUF2205) Tektin PF03148.9 gi|305663691|ref|YP_003859979.1| - 0.021 13.4 1.7 0.024 13.1 1.2 1.0 1 0 0 1 1 1 0 Tektin family Prefoldin_2 PF01920.15 gi|305663691|ref|YP_003859979.1| - 0.034 13.8 5.6 0.04 13.6 3.8 1.1 1 0 0 1 1 1 0 Prefoldin subunit DivIC PF04977.10 gi|305663691|ref|YP_003859979.1| - 0.069 12.6 4.0 0.096 12.1 2.8 1.3 1 0 0 1 1 1 0 Septum formation initiator Tropomyosin_1 PF12718.2 gi|305663691|ref|YP_003859979.1| - 0.071 12.9 5.6 0.084 12.7 3.9 1.0 1 0 0 1 1 1 0 Tropomyosin like DUF1664 PF07889.7 gi|305663691|ref|YP_003859979.1| - 0.074 12.8 0.3 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Rbsn PF11464.3 gi|305663691|ref|YP_003859979.1| - 0.097 12.2 0.4 0.2 11.2 0.2 1.4 1 0 0 1 1 1 0 Rabenosyn Rab binding domain ApoO PF09769.4 gi|305663691|ref|YP_003859979.1| - 0.11 12.1 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein O Fib_alpha PF08702.5 gi|305663691|ref|YP_003859979.1| - 0.12 12.4 0.5 0.14 12.2 0.4 1.1 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DinB PF05163.7 gi|305663691|ref|YP_003859979.1| - 0.13 11.9 0.1 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 DinB family IncA PF04156.9 gi|305663691|ref|YP_003859979.1| - 0.13 11.8 5.4 0.16 11.5 3.7 1.0 1 0 0 1 1 1 0 IncA protein Macoilin PF09726.4 gi|305663691|ref|YP_003859979.1| - 0.27 9.4 2.1 0.32 9.2 1.5 1.0 1 0 0 1 1 1 0 Transmembrane protein DUF3552 PF12072.3 gi|305663691|ref|YP_003859979.1| - 0.39 9.9 7.6 0.45 9.6 5.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) Sugarporin_N PF11471.3 gi|305663691|ref|YP_003859979.1| - 0.67 9.6 6.9 1.5 8.5 4.8 1.5 1 1 0 1 1 1 0 Maltoporin periplasmic N-terminal extension CENP-Q PF13094.1 gi|305663691|ref|YP_003859979.1| - 1.4 8.8 6.5 1.7 8.6 4.5 1.1 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit M PF02370.11 gi|305663691|ref|YP_003859979.1| - 8.2 7.1 8.7 4.4 7.9 1.4 2.3 1 1 1 2 2 2 0 M protein repeat DUF134 PF02001.11 gi|305663692|ref|YP_003859980.1| - 4.9e-22 77.8 0.0 5.6e-22 77.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF134 Sigma70_r4_2 PF08281.7 gi|305663692|ref|YP_003859980.1| - 7.5e-07 28.5 0.0 1.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|305663692|ref|YP_003859980.1| - 3.3e-05 23.1 0.0 5.8e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|305663692|ref|YP_003859980.1| - 0.0015 18.5 0.2 0.0038 17.1 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|305663692|ref|YP_003859980.1| - 0.0029 17.2 0.0 0.011 15.4 0.0 2.0 1 1 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.2 gi|305663692|ref|YP_003859980.1| - 0.003 17.7 0.2 0.086 13.0 0.0 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_1 PF00126.22 gi|305663692|ref|YP_003859980.1| - 0.0096 15.6 0.1 0.014 15.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_3 PF01381.17 gi|305663692|ref|YP_003859980.1| - 0.011 15.6 0.1 0.02 14.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.1 gi|305663692|ref|YP_003859980.1| - 0.012 14.7 0.1 0.042 13.0 0.0 1.8 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 DUF1492 PF07374.6 gi|305663692|ref|YP_003859980.1| - 0.018 15.1 0.0 0.025 14.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) HTH_29 PF13551.1 gi|305663692|ref|YP_003859980.1| - 0.059 13.5 0.1 0.09 12.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_ECF PF07638.6 gi|305663692|ref|YP_003859980.1| - 0.087 12.4 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 ECF sigma factor VIT1 PF01988.14 gi|305663693|ref|YP_003859981.1| - 6.2e-12 45.4 34.3 3.1e-07 30.1 7.5 2.8 2 1 1 3 3 3 2 VIT family Rubrerythrin PF02915.12 gi|305663693|ref|YP_003859981.1| - 3.8e-05 24.0 2.5 0.00015 22.0 1.0 2.3 2 1 0 2 2 2 1 Rubrerythrin COQ7 PF03232.8 gi|305663693|ref|YP_003859981.1| - 0.00013 21.5 0.0 0.21 11.0 0.0 2.3 2 0 0 2 2 2 2 Ubiquinone biosynthesis protein COQ7 TspO_MBR PF03073.10 gi|305663693|ref|YP_003859981.1| - 0.0045 16.5 4.0 0.04 13.4 1.9 2.2 2 0 0 2 2 2 1 TspO/MBR family Chloroplast_duf PF14476.1 gi|305663693|ref|YP_003859981.1| - 0.14 10.8 0.5 0.5 9.1 0.1 1.8 2 0 0 2 2 2 0 Petal formation-expressed Renin_r PF07850.9 gi|305663693|ref|YP_003859981.1| - 0.45 10.9 6.3 11 6.3 2.1 2.5 2 0 0 2 2 2 0 Renin receptor-like protein Pex24p PF06398.6 gi|305663693|ref|YP_003859981.1| - 6 5.5 6.5 10 4.7 3.6 1.8 2 0 0 2 2 2 0 Integral peroxisomal membrane peroxin ThiC PF01964.13 gi|305663694|ref|YP_003859982.1| - 6.5e-173 575.0 0.0 7.3e-173 574.9 0.0 1.0 1 0 0 1 1 1 1 ThiC family Corona_NS2A PF05213.7 gi|305663694|ref|YP_003859982.1| - 0.094 12.0 0.1 0.27 10.5 0.0 1.7 1 0 0 1 1 1 0 Coronavirus NS2A protein DUF2960 PF11173.3 gi|305663694|ref|YP_003859982.1| - 0.13 12.5 0.1 18 5.7 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2960) CbiK PF06180.6 gi|305663695|ref|YP_003859983.1| - 0.049 12.7 0.0 0.06 12.4 0.0 1.1 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Arch_ATPase PF01637.13 gi|305663696|ref|YP_003859984.1| - 3.6e-11 43.2 3.3 2.2e-09 37.3 1.0 2.6 2 1 1 3 3 3 2 Archaeal ATPase AAA_35 PF14516.1 gi|305663696|ref|YP_003859984.1| - 7e-05 21.6 0.0 0.00043 19.0 0.0 1.9 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|305663696|ref|YP_003859984.1| - 0.00011 22.2 0.0 0.00036 20.5 0.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.1 gi|305663696|ref|YP_003859984.1| - 0.00016 21.5 0.1 0.00062 19.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain PPV_E1_C PF00519.12 gi|305663696|ref|YP_003859984.1| - 0.0037 15.9 0.0 0.0064 15.1 0.0 1.3 1 0 0 1 1 1 1 Papillomavirus helicase APS_kinase PF01583.15 gi|305663696|ref|YP_003859984.1| - 0.017 14.7 0.0 0.077 12.6 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase MobB PF03205.9 gi|305663696|ref|YP_003859984.1| - 0.021 14.5 0.0 0.075 12.7 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|305663696|ref|YP_003859984.1| - 0.021 14.9 0.1 0.23 11.5 0.1 2.3 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305663696|ref|YP_003859984.1| - 0.03 13.2 0.1 0.085 11.7 0.0 1.7 2 0 0 2 2 2 0 Type II/IV secretion system protein RNA12 PF10443.4 gi|305663696|ref|YP_003859984.1| - 0.041 12.3 0.1 0.097 11.1 0.0 1.5 2 0 0 2 2 2 0 RNA12 protein AAA_23 PF13476.1 gi|305663696|ref|YP_003859984.1| - 0.062 13.6 0.3 0.13 12.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|305663696|ref|YP_003859984.1| - 0.068 12.3 0.0 0.12 11.6 0.0 1.5 1 1 0 1 1 1 0 PhoH-like protein RecA PF00154.16 gi|305663696|ref|YP_003859984.1| - 0.078 12.0 0.0 0.16 10.9 0.0 1.5 1 1 0 1 1 1 0 recA bacterial DNA recombination protein CRAL_TRIO_2 PF13716.1 gi|305663696|ref|YP_003859984.1| - 0.13 12.1 0.0 0.3 10.9 0.0 1.7 1 1 0 1 1 1 0 Divergent CRAL/TRIO domain AAA_17 PF13207.1 gi|305663696|ref|YP_003859984.1| - 0.16 12.7 1.5 0.48 11.2 0.9 2.2 1 1 0 1 1 1 0 AAA domain SHMT PF00464.14 gi|305663697|ref|YP_003859985.1| - 7.1e-70 235.3 0.0 9.7e-70 234.9 0.0 1.1 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|305663697|ref|YP_003859985.1| - 6.6e-12 45.1 0.0 9.3e-12 44.6 0.0 1.1 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|305663697|ref|YP_003859985.1| - 2.8e-08 33.1 0.0 5.7e-08 32.0 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|305663697|ref|YP_003859985.1| - 1.4e-06 27.6 0.3 4.5e-06 25.9 0.2 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SelA PF03841.8 gi|305663697|ref|YP_003859985.1| - 0.0005 18.9 0.0 0.00078 18.2 0.0 1.3 1 0 0 1 1 1 1 L-seryl-tRNA selenium transferase Cren7 PF11520.3 gi|305663698|ref|YP_003859986.1| - 1.1e-28 98.6 2.8 1.2e-28 98.5 1.9 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 Fe_dep_repr_C PF02742.10 gi|305663699|ref|YP_003859987.1| - 1.4e-23 82.3 0.6 2.7e-23 81.4 0.1 1.7 2 0 0 2 2 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|305663699|ref|YP_003859987.1| - 1.2e-20 73.1 0.0 2.4e-20 72.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|305663699|ref|YP_003859987.1| - 4e-08 32.8 0.0 6.8e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|305663699|ref|YP_003859987.1| - 3.9e-07 29.3 0.0 7.5e-07 28.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|305663699|ref|YP_003859987.1| - 4.1e-06 26.5 0.0 9e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.17 gi|305663699|ref|YP_003859987.1| - 1e-05 25.1 0.0 2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|305663699|ref|YP_003859987.1| - 1.9e-05 24.2 0.0 4e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|305663699|ref|YP_003859987.1| - 3.5e-05 23.2 0.0 0.0001 21.8 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.7 gi|305663699|ref|YP_003859987.1| - 6.4e-05 22.5 0.0 0.00018 21.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|305663699|ref|YP_003859987.1| - 7.7e-05 22.1 0.0 0.00019 20.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|305663699|ref|YP_003859987.1| - 0.00013 21.4 0.0 0.00027 20.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|305663699|ref|YP_003859987.1| - 0.00022 21.4 0.0 0.00037 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|305663699|ref|YP_003859987.1| - 0.00024 20.5 0.0 0.00056 19.4 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|305663699|ref|YP_003859987.1| - 0.00029 20.5 0.0 0.00072 19.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|305663699|ref|YP_003859987.1| - 0.0003 20.4 0.0 0.00078 19.0 0.0 1.6 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|305663699|ref|YP_003859987.1| - 0.00031 20.7 0.0 0.00094 19.2 0.0 1.7 2 0 0 2 2 1 1 Transcriptional regulator GntR PF00392.16 gi|305663699|ref|YP_003859987.1| - 0.00041 19.7 0.0 0.0012 18.2 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|305663699|ref|YP_003859987.1| - 0.00077 19.4 0.0 0.0037 17.2 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|305663699|ref|YP_003859987.1| - 0.0012 18.3 0.0 0.0024 17.3 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_36 PF13730.1 gi|305663699|ref|YP_003859987.1| - 0.0021 18.1 0.0 0.004 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|305663699|ref|YP_003859987.1| - 0.0024 17.4 0.0 0.0044 16.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_7 PF02796.10 gi|305663699|ref|YP_003859987.1| - 0.0025 17.6 0.5 0.38 10.6 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain of resolvase Crp PF00325.15 gi|305663699|ref|YP_003859987.1| - 0.0063 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family CENP-B_N PF04218.8 gi|305663699|ref|YP_003859987.1| - 0.0069 15.7 0.0 0.041 13.3 0.0 2.1 2 0 0 2 2 2 1 CENP-B N-terminal DNA-binding domain HTH_34 PF13601.1 gi|305663699|ref|YP_003859987.1| - 0.0071 16.3 0.0 0.049 13.6 0.0 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain LacI PF00356.16 gi|305663699|ref|YP_003859987.1| - 0.0085 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family HTH_AsnC-type PF13404.1 gi|305663699|ref|YP_003859987.1| - 0.0093 15.4 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|305663699|ref|YP_003859987.1| - 0.0096 15.3 0.0 0.047 13.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|305663699|ref|YP_003859987.1| - 0.012 15.3 0.0 0.1 12.3 0.0 2.4 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HxlR PF01638.12 gi|305663699|ref|YP_003859987.1| - 0.017 14.7 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Phage_terminase PF10668.4 gi|305663699|ref|YP_003859987.1| - 0.017 14.8 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Phage terminase small subunit HTH_AraC PF00165.18 gi|305663699|ref|YP_003859987.1| - 0.023 14.5 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_6 PF01418.12 gi|305663699|ref|YP_003859987.1| - 0.028 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_29 PF13551.1 gi|305663699|ref|YP_003859987.1| - 0.036 14.2 0.0 0.16 12.1 0.0 1.8 1 1 1 2 2 2 0 Winged helix-turn helix Phage_CI_repr PF07022.8 gi|305663699|ref|YP_003859987.1| - 0.044 13.8 0.0 0.054 13.5 0.0 1.3 1 1 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain GerE PF00196.14 gi|305663699|ref|YP_003859987.1| - 0.05 12.9 0.0 0.089 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family FaeA PF04703.7 gi|305663699|ref|YP_003859987.1| - 0.054 13.6 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein HTH_40 PF14493.1 gi|305663699|ref|YP_003859987.1| - 0.1 12.8 0.0 0.22 11.7 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|305663699|ref|YP_003859987.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_3 PF01381.17 gi|305663699|ref|YP_003859987.1| - 0.13 12.1 0.0 0.4 10.5 0.0 1.9 1 1 1 2 2 1 0 Helix-turn-helix HTH_Tnp_ISL3 PF13542.1 gi|305663699|ref|YP_003859987.1| - 0.13 11.4 0.2 0.66 9.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 RPA_C PF08784.6 gi|305663699|ref|YP_003859987.1| - 0.16 12.3 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_17 PF12728.2 gi|305663699|ref|YP_003859987.1| - 0.19 12.0 1.5 0.85 9.9 0.0 2.8 3 1 0 3 3 2 0 Helix-turn-helix domain FeoB_N PF02421.13 gi|305663700|ref|YP_003859988.1| - 2e-47 160.3 0.0 3.2e-47 159.6 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Gate PF07670.9 gi|305663700|ref|YP_003859988.1| - 2.9e-24 85.0 32.1 7.7e-21 74.0 5.4 3.6 3 1 1 4 4 4 2 Nucleoside recognition MMR_HSR1 PF01926.18 gi|305663700|ref|YP_003859988.1| - 1.7e-15 57.0 0.0 3.3e-15 56.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_C PF07664.7 gi|305663700|ref|YP_003859988.1| - 1e-07 31.2 0.3 1e-07 31.2 0.2 3.9 4 0 0 4 4 4 1 Ferrous iron transport protein B C terminus SRPRB PF09439.5 gi|305663700|ref|YP_003859988.1| - 0.001 18.3 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AIG1 PF04548.11 gi|305663700|ref|YP_003859988.1| - 0.0019 17.3 0.0 0.0038 16.3 0.0 1.5 1 0 0 1 1 1 1 AIG1 family Miro PF08477.8 gi|305663700|ref|YP_003859988.1| - 0.011 16.1 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|305663700|ref|YP_003859988.1| - 0.016 15.0 0.7 0.052 13.3 0.2 1.9 1 1 1 2 2 2 0 Dynamin family IIGP PF05049.8 gi|305663700|ref|YP_003859988.1| - 0.023 13.5 0.0 0.039 12.7 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) GTP_EFTU PF00009.22 gi|305663700|ref|YP_003859988.1| - 0.028 13.8 0.0 0.28 10.6 0.0 2.3 1 1 0 1 1 1 0 Elongation factor Tu GTP binding domain ArgK PF03308.11 gi|305663700|ref|YP_003859988.1| - 0.036 12.8 0.1 6.4 5.4 0.0 2.2 2 0 0 2 2 2 0 ArgK protein PduV-EutP PF10662.4 gi|305663700|ref|YP_003859988.1| - 0.044 13.2 0.0 0.16 11.4 0.0 2.0 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation MAAL_C PF07476.6 gi|305663700|ref|YP_003859988.1| - 0.095 11.6 0.0 0.18 10.7 0.0 1.4 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DUF258 PF03193.11 gi|305663700|ref|YP_003859988.1| - 0.1 11.8 0.0 0.21 10.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Ras PF00071.17 gi|305663700|ref|YP_003859988.1| - 0.15 11.4 0.0 4.5 6.6 0.0 2.2 2 0 0 2 2 2 0 Ras family AAA_28 PF13521.1 gi|305663700|ref|YP_003859988.1| - 0.22 11.4 0.0 0.42 10.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain FeoA PF04023.9 gi|305663701|ref|YP_003859989.1| - 2.4e-13 49.8 0.5 2.8e-13 49.6 0.3 1.0 1 0 0 1 1 1 1 FeoA domain Arch_ATPase PF01637.13 gi|305663702|ref|YP_003859990.1| - 1.9e-54 184.8 0.3 2.8e-54 184.2 0.2 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|305663702|ref|YP_003859990.1| - 5e-06 26.7 0.0 9.2e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|305663702|ref|YP_003859990.1| - 3.6e-05 23.9 0.0 7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663702|ref|YP_003859990.1| - 4.7e-05 23.4 0.0 9.1e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|305663702|ref|YP_003859990.1| - 9.7e-05 21.3 0.0 0.00018 20.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_17 PF13207.1 gi|305663702|ref|YP_003859990.1| - 0.00052 20.8 1.6 0.0016 19.2 0.1 2.4 1 1 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|305663702|ref|YP_003859990.1| - 0.0026 18.1 0.0 0.0085 16.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|305663702|ref|YP_003859990.1| - 0.0055 16.3 0.0 0.0085 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|305663702|ref|YP_003859990.1| - 0.0059 15.3 0.0 0.0087 14.7 0.0 1.2 1 0 0 1 1 1 1 PrkA AAA domain AAA_14 PF13173.1 gi|305663702|ref|YP_003859990.1| - 0.0063 16.4 0.2 0.02 14.7 0.0 2.0 2 1 0 2 2 2 1 AAA domain RE_HindVP PF09519.5 gi|305663702|ref|YP_003859990.1| - 0.01 14.7 0.0 0.016 14.0 0.0 1.2 1 0 0 1 1 1 0 HindVP restriction endonuclease UPF0146 PF03686.8 gi|305663702|ref|YP_003859990.1| - 0.011 15.5 0.9 0.86 9.4 0.3 3.0 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0146) AAA_24 PF13479.1 gi|305663702|ref|YP_003859990.1| - 0.014 14.9 0.1 0.028 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|305663702|ref|YP_003859990.1| - 0.018 14.9 0.0 0.046 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|305663702|ref|YP_003859990.1| - 0.026 13.4 0.0 0.097 11.5 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 RNA_helicase PF00910.17 gi|305663702|ref|YP_003859990.1| - 0.033 14.3 0.0 0.087 13.0 0.0 1.7 2 0 0 2 2 1 0 RNA helicase Zeta_toxin PF06414.7 gi|305663702|ref|YP_003859990.1| - 0.033 13.2 0.0 0.076 12.1 0.0 1.6 1 1 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|305663702|ref|YP_003859990.1| - 0.038 13.8 0.0 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305663702|ref|YP_003859990.1| - 0.041 13.3 0.0 4.1 6.7 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain MobB PF03205.9 gi|305663702|ref|YP_003859990.1| - 0.051 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|305663702|ref|YP_003859990.1| - 0.055 13.7 0.9 0.18 12.1 0.0 2.2 2 2 0 2 2 2 0 AAA domain SRPRB PF09439.5 gi|305663702|ref|YP_003859990.1| - 0.088 12.0 0.1 0.51 9.5 0.0 2.2 3 0 0 3 3 3 0 Signal recognition particle receptor beta subunit KAP_NTPase PF07693.9 gi|305663702|ref|YP_003859990.1| - 0.11 11.5 0.0 0.18 10.7 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain AAA_5 PF07728.9 gi|305663702|ref|YP_003859990.1| - 0.14 11.9 0.0 0.3 10.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Adeno_IVa2 PF02456.10 gi|305663702|ref|YP_003859990.1| - 0.18 10.4 0.0 0.28 9.7 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein HTH_45 PF14947.1 gi|305663703|ref|YP_003859991.1| - 2.6e-13 49.5 0.0 3.4e-13 49.2 0.0 1.0 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|305663703|ref|YP_003859991.1| - 9.3e-05 22.0 0.1 0.00014 21.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|305663703|ref|YP_003859991.1| - 0.00014 21.4 0.0 0.0002 21.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|305663703|ref|YP_003859991.1| - 0.00036 19.8 0.4 0.0006 19.1 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RPA_C PF08784.6 gi|305663703|ref|YP_003859991.1| - 0.001 19.4 0.0 0.0016 18.8 0.0 1.2 1 0 0 1 1 1 1 Replication protein A C terminal HemN_C PF06969.11 gi|305663703|ref|YP_003859991.1| - 0.0037 17.3 0.1 0.0059 16.6 0.0 1.4 1 1 0 1 1 1 1 HemN C-terminal domain DUF4423 PF14394.1 gi|305663703|ref|YP_003859991.1| - 0.0063 16.0 0.0 0.0069 15.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_23 PF13384.1 gi|305663703|ref|YP_003859991.1| - 0.01 15.4 0.1 0.02 14.5 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|305663703|ref|YP_003859991.1| - 0.025 14.5 0.1 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|305663703|ref|YP_003859991.1| - 0.042 14.1 0.0 0.056 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|305663703|ref|YP_003859991.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fer4 PF00037.22 gi|305663704|ref|YP_003859992.1| - 7.7e-12 44.2 15.2 1.5e-08 33.9 2.3 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|305663704|ref|YP_003859992.1| - 8.2e-10 38.1 12.5 3.9e-06 26.4 1.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|305663704|ref|YP_003859992.1| - 1.2e-09 37.4 12.5 1e-07 31.4 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|305663704|ref|YP_003859992.1| - 3.8e-09 36.6 12.3 4.9e-09 36.3 8.5 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305663704|ref|YP_003859992.1| - 8.9e-09 35.0 10.3 5.2e-08 32.5 7.7 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|305663704|ref|YP_003859992.1| - 2.4e-08 34.2 11.2 5.3e-08 33.1 7.9 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305663704|ref|YP_003859992.1| - 5.5e-08 32.5 8.2 6.9e-08 32.2 5.7 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|305663704|ref|YP_003859992.1| - 3.4e-05 23.8 12.4 0.00019 21.5 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|305663704|ref|YP_003859992.1| - 0.00014 22.1 8.4 0.0031 17.9 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|305663704|ref|YP_003859992.1| - 0.00016 21.9 16.4 0.022 15.2 2.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|305663704|ref|YP_003859992.1| - 0.00028 21.5 8.8 0.13 13.0 0.6 2.2 1 1 2 3 3 3 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|305663704|ref|YP_003859992.1| - 0.00039 20.9 8.2 0.0073 16.8 6.0 2.1 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|305663704|ref|YP_003859992.1| - 0.0018 18.2 10.9 0.16 12.0 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|305663704|ref|YP_003859992.1| - 0.0019 18.5 10.1 0.036 14.4 7.0 2.1 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|305663704|ref|YP_003859992.1| - 0.0023 18.2 9.4 0.1 12.9 1.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.1 gi|305663704|ref|YP_003859992.1| - 0.012 15.4 5.3 0.029 14.2 3.6 1.6 1 1 0 1 1 1 0 4Fe-4S dicluster domain GF_recep_IV PF14843.1 gi|305663704|ref|YP_003859992.1| - 0.11 12.1 5.5 0.13 11.8 3.8 1.2 1 0 0 1 1 1 0 Growth factor receptor domain IV DUF3079 PF11278.3 gi|305663704|ref|YP_003859992.1| - 0.11 12.0 5.2 0.86 9.2 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3079) Fer4_19 PF06902.6 gi|305663704|ref|YP_003859992.1| - 0.11 12.3 3.1 0.16 11.7 2.1 1.3 1 0 0 1 1 1 0 Divergent 4Fe-4S mono-cluster TusA PF01206.12 gi|305663706|ref|YP_003859994.1| - 2.1e-08 33.6 0.0 2.5e-08 33.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA UBX PF00789.15 gi|305663706|ref|YP_003859994.1| - 0.025 14.6 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 UBX domain DUF2249 PF10006.4 gi|305663706|ref|YP_003859994.1| - 0.077 12.5 0.0 0.17 11.4 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) eRF1_1 PF03463.10 gi|305663707|ref|YP_003859995.1| - 5.2e-22 77.8 0.1 8.6e-22 77.1 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|305663707|ref|YP_003859995.1| - 5.1e-17 62.1 0.5 1e-16 61.1 0.1 1.7 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|305663707|ref|YP_003859995.1| - 6.3e-13 49.1 0.1 2.4e-12 47.3 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 2 Usp PF00582.21 gi|305663707|ref|YP_003859995.1| - 0.078 13.1 0.2 0.24 11.5 0.2 1.8 1 1 0 1 1 1 0 Universal stress protein family Radical_SAM PF04055.16 gi|305663708|ref|YP_003859996.1| - 1.2e-23 84.0 0.1 3.4e-23 82.6 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily DUF2002 PF09400.5 gi|305663708|ref|YP_003859996.1| - 0.098 12.3 0.1 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) EamA PF00892.15 gi|305663710|ref|YP_003859998.1| - 1.7e-22 79.8 45.6 3.9e-13 49.5 15.3 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|305663710|ref|YP_003859998.1| - 2.7e-11 43.6 36.0 6.4e-07 29.5 9.2 2.7 3 0 0 3 3 3 2 Multidrug resistance efflux transporter PsaM PF07465.8 gi|305663710|ref|YP_003859998.1| - 0.66 9.6 0.0 0.66 9.6 0.0 3.7 4 0 0 4 4 4 0 Photosystem I protein M (PsaM) UPF0546 PF10639.4 gi|305663710|ref|YP_003859998.1| - 1.1 9.1 14.6 0.17 11.7 1.8 2.9 3 0 0 3 3 3 0 Uncharacterised protein family UPF0546 DUF872 PF05915.7 gi|305663710|ref|YP_003859998.1| - 1.6 8.5 6.6 3.1 7.6 0.0 3.4 3 0 0 3 3 3 0 Eukaryotic protein of unknown function (DUF872) DUF373 PF04123.8 gi|305663710|ref|YP_003859998.1| - 3.2 6.7 25.8 0.51 9.2 1.1 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF373) DUF104 PF01954.11 gi|305663712|ref|YP_003860000.1| - 3.1e-11 43.1 1.9 3.6e-11 42.9 1.3 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 GCR1_C PF12550.3 gi|305663713|ref|YP_003860001.1| - 0.081 12.8 1.3 0.11 12.4 0.9 1.2 1 0 0 1 1 1 0 Transcriptional activator of glycolytic enzymes HTH_AsnC-type PF13404.1 gi|305663715|ref|YP_003860003.1| - 0.2 11.2 0.3 0.2 11.2 0.2 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Peptidase_S24 PF00717.18 gi|305663716|ref|YP_003860004.1| - 4.5e-05 23.0 2.1 8.7e-05 22.0 0.2 2.4 3 0 0 3 3 3 1 Peptidase S24-like Baculo_PEP_C PF04513.7 gi|305663719|ref|YP_003860007.1| - 0.00084 19.1 0.0 0.002 17.9 0.0 1.5 2 0 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Sec3_C PF09763.4 gi|305663719|ref|YP_003860007.1| - 0.0033 15.6 0.7 0.0056 14.8 0.3 1.4 1 1 0 1 1 1 1 Exocyst complex component Sec3 DUF2884 PF11101.3 gi|305663719|ref|YP_003860007.1| - 0.0079 15.5 0.9 0.06 12.7 0.6 2.1 1 1 0 1 1 1 1 Protein of unknown function (DUF2884) AAA_13 PF13166.1 gi|305663719|ref|YP_003860007.1| - 0.0094 14.4 0.6 0.014 13.9 0.4 1.2 1 0 0 1 1 1 1 AAA domain V_ATPase_I PF01496.14 gi|305663719|ref|YP_003860007.1| - 0.016 13.1 1.0 0.018 12.9 0.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Vac_Fusion PF02346.11 gi|305663719|ref|YP_003860007.1| - 0.021 14.2 11.4 0.032 13.6 0.6 3.0 3 1 0 3 3 2 0 Chordopoxvirus fusion protein Prefoldin PF02996.12 gi|305663719|ref|YP_003860007.1| - 0.031 13.9 3.8 0.11 12.1 0.2 2.9 3 0 0 3 3 3 0 Prefoldin subunit Sec8_exocyst PF04048.9 gi|305663719|ref|YP_003860007.1| - 0.032 13.8 0.7 0.16 11.6 0.1 2.1 2 1 0 2 2 2 0 Sec8 exocyst complex component specific domain Hemagglutinin PF00509.13 gi|305663719|ref|YP_003860007.1| - 0.038 12.1 0.5 0.061 11.4 0.3 1.4 1 1 0 1 1 1 0 Haemagglutinin Spc7 PF08317.6 gi|305663719|ref|YP_003860007.1| - 0.044 12.4 4.6 0.014 14.0 1.5 1.4 2 0 0 2 2 1 0 Spc7 kinetochore protein Myosin_tail_1 PF01576.14 gi|305663719|ref|YP_003860007.1| - 0.048 11.3 12.5 0.18 9.5 8.7 1.8 1 1 0 1 1 1 0 Myosin tail RmuC PF02646.11 gi|305663719|ref|YP_003860007.1| - 0.048 12.4 1.4 0.59 8.9 0.1 2.3 1 1 1 2 2 2 0 RmuC family TFR_dimer PF04253.10 gi|305663719|ref|YP_003860007.1| - 0.053 13.0 0.5 0.18 11.4 0.2 1.9 1 1 1 2 2 2 0 Transferrin receptor-like dimerisation domain Laminin_II PF06009.7 gi|305663719|ref|YP_003860007.1| - 0.058 13.1 1.2 0.51 10.1 0.2 2.4 2 1 0 2 2 2 0 Laminin Domain II WEMBL PF05701.6 gi|305663719|ref|YP_003860007.1| - 0.059 11.8 3.1 0.085 11.3 2.2 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light DUF16 PF01519.11 gi|305663719|ref|YP_003860007.1| - 0.066 13.4 0.5 0.24 11.6 0.4 1.9 1 1 0 1 1 1 0 Protein of unknown function DUF16 Herpes_U30 PF04523.8 gi|305663719|ref|YP_003860007.1| - 0.068 10.6 0.1 0.092 10.1 0.1 1.2 1 0 0 1 1 1 0 Herpes virus tegument protein U30 MtrG PF04210.8 gi|305663719|ref|YP_003860007.1| - 0.078 12.6 5.0 0.71 9.5 0.2 2.9 2 1 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF1110 PF06533.7 gi|305663719|ref|YP_003860007.1| - 0.086 12.6 0.2 0.17 11.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1110) DUF922 PF06037.6 gi|305663719|ref|YP_003860007.1| - 0.11 11.8 1.0 0.2 10.9 0.7 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF922) TelA PF05816.6 gi|305663719|ref|YP_003860007.1| - 0.12 11.0 3.6 0.95 8.1 2.5 2.3 1 1 0 1 1 1 0 Toxic anion resistance protein (TelA) IncA PF04156.9 gi|305663719|ref|YP_003860007.1| - 0.13 11.8 8.6 0.072 12.6 3.7 2.0 2 0 0 2 2 2 0 IncA protein Occludin_ELL PF07303.8 gi|305663719|ref|YP_003860007.1| - 0.16 12.7 4.6 0.68 10.6 0.4 2.7 2 1 1 3 3 2 0 Occludin homology domain Nup54 PF13874.1 gi|305663719|ref|YP_003860007.1| - 0.17 11.5 5.5 1.7 8.3 0.4 2.9 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 Laminin_I PF06008.9 gi|305663719|ref|YP_003860007.1| - 0.19 11.0 2.8 0.14 11.4 0.9 1.5 2 0 0 2 2 1 0 Laminin Domain I PMC2NT PF08066.7 gi|305663719|ref|YP_003860007.1| - 0.22 11.8 1.0 0.54 10.5 0.2 2.0 2 0 0 2 2 1 0 PMC2NT (NUC016) domain Syntaxin_2 PF14523.1 gi|305663719|ref|YP_003860007.1| - 0.22 11.5 1.9 0.71 9.9 0.1 2.5 2 1 1 3 3 3 0 Syntaxin-like protein DUF1664 PF07889.7 gi|305663719|ref|YP_003860007.1| - 0.27 11.0 1.6 2.1 8.1 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3552 PF12072.3 gi|305663719|ref|YP_003860007.1| - 0.28 10.3 8.5 0.14 11.3 3.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) Snapin_Pallidin PF14712.1 gi|305663719|ref|YP_003860007.1| - 0.3 11.4 2.3 0.58 10.4 0.3 2.3 2 1 0 2 2 2 0 Snapin/Pallidin DUF2018 PF09442.5 gi|305663719|ref|YP_003860007.1| - 0.33 11.5 5.2 0.64 10.6 0.4 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF2018) APG6 PF04111.7 gi|305663719|ref|YP_003860007.1| - 0.35 9.8 2.7 0.57 9.1 1.9 1.3 1 0 0 1 1 1 0 Autophagy protein Apg6 Mis14 PF08641.7 gi|305663719|ref|YP_003860007.1| - 0.4 10.7 2.2 24 4.9 0.1 2.5 2 1 0 2 2 2 0 Kinetochore protein Mis14 like GvpK PF05121.7 gi|305663719|ref|YP_003860007.1| - 0.49 10.2 4.5 1.3 8.8 0.5 2.9 2 1 1 3 3 2 0 Gas vesicle protein K DUF1978 PF09321.5 gi|305663719|ref|YP_003860007.1| - 0.5 9.7 10.3 1.3 8.4 5.5 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1978) XhlA PF10779.4 gi|305663719|ref|YP_003860007.1| - 0.51 10.2 6.6 1.6 8.6 0.7 2.5 2 0 0 2 2 2 0 Haemolysin XhlA Spc24 PF08286.6 gi|305663719|ref|YP_003860007.1| - 0.51 10.0 5.8 0.31 10.7 1.1 2.4 1 1 2 3 3 3 0 Spc24 subunit of Ndc80 Prefoldin_2 PF01920.15 gi|305663719|ref|YP_003860007.1| - 0.54 10.0 6.9 1.3 8.8 0.8 2.8 3 0 0 3 3 2 0 Prefoldin subunit GAS PF13851.1 gi|305663719|ref|YP_003860007.1| - 0.67 9.1 8.4 0.35 10.0 3.8 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF883 PF05957.8 gi|305663719|ref|YP_003860007.1| - 0.87 10.0 4.9 12 6.3 0.4 3.2 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) DUF848 PF05852.6 gi|305663719|ref|YP_003860007.1| - 1.1 9.1 6.1 16 5.3 3.6 2.3 2 0 0 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) HSBP1 PF06825.7 gi|305663719|ref|YP_003860007.1| - 1.3 8.6 5.1 0.34 10.5 0.3 2.4 3 1 0 3 3 2 0 Heat shock factor binding protein 1 THOC7 PF05615.8 gi|305663719|ref|YP_003860007.1| - 1.9 8.7 8.4 5.9 7.1 5.4 2.0 1 1 1 2 2 2 0 Tho complex subunit 7 DUF972 PF06156.8 gi|305663719|ref|YP_003860007.1| - 2.1 8.7 7.8 2.9 8.3 1.0 3.4 2 1 2 4 4 4 0 Protein of unknown function (DUF972) TMF_TATA_bd PF12325.3 gi|305663719|ref|YP_003860007.1| - 2.9 7.6 13.3 4.2 7.1 6.0 2.5 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Rootletin PF15035.1 gi|305663719|ref|YP_003860007.1| - 5.3 6.9 10.2 0.79 9.6 1.1 2.7 2 1 1 3 3 3 0 Ciliary rootlet component, centrosome cohesion Kinetocho_Slk19 PF12709.2 gi|305663719|ref|YP_003860007.1| - 5.4 7.1 6.5 38 4.4 0.1 3.2 2 1 1 3 3 3 0 Central kinetochore-associated DUF4200 PF13863.1 gi|305663719|ref|YP_003860007.1| - 5.8 6.8 12.6 6.2 6.7 3.7 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TMF_DNA_bd PF12329.3 gi|305663719|ref|YP_003860007.1| - 6.1 6.7 7.1 5.4 6.8 0.3 3.5 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding MutS_III PF05192.13 gi|305663719|ref|YP_003860007.1| - 9.2 5.9 7.5 5.4 6.7 2.1 2.3 1 1 1 2 2 2 0 MutS domain III NADH_dh_m_C1 PF15088.1 gi|305663721|ref|YP_003860009.1| - 0.023 14.1 0.8 0.074 12.5 0.1 2.0 2 0 0 2 2 2 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF2818 PF10993.3 gi|305663721|ref|YP_003860009.1| - 0.072 13.6 3.2 0.096 13.1 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2818) FA_desaturase PF00487.19 gi|305663721|ref|YP_003860009.1| - 0.38 10.1 7.6 0.42 10.0 5.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Abi PF02517.11 gi|305663724|ref|YP_003860012.1| - 3.5e-17 62.2 0.4 6.3e-17 61.4 0.1 1.4 1 1 0 1 1 1 1 CAAX protease self-immunity Pyridox_ox_2 PF12900.2 gi|305663724|ref|YP_003860012.1| - 0.035 13.9 0.0 0.049 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase PsbL PF02419.12 gi|305663724|ref|YP_003860012.1| - 1.6 8.2 5.0 0.45 9.9 0.3 2.4 2 0 0 2 2 2 0 PsbL protein Rubredoxin PF00301.15 gi|305663726|ref|YP_003860014.1| - 0.00038 20.2 4.7 0.019 14.8 3.2 2.3 1 1 0 1 1 1 1 Rubredoxin zf-FPG_IleRS PF06827.9 gi|305663726|ref|YP_003860014.1| - 0.0077 15.8 0.8 0.3 10.7 0.1 2.4 2 0 0 2 2 2 1 Zinc finger found in FPG and IleRS HypA PF01155.14 gi|305663726|ref|YP_003860014.1| - 0.026 14.1 0.5 0.057 13.1 0.1 1.7 2 1 0 2 2 2 0 Hydrogenase expression/synthesis hypA family GTPase_Cys_C PF12631.2 gi|305663726|ref|YP_003860014.1| - 0.049 14.0 0.1 0.059 13.7 0.1 1.1 1 0 0 1 1 1 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DZR PF12773.2 gi|305663726|ref|YP_003860014.1| - 0.054 13.3 1.1 0.091 12.5 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|305663726|ref|YP_003860014.1| - 0.082 12.2 2.4 4.9 6.5 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding KNOX1 PF03790.8 gi|305663726|ref|YP_003860014.1| - 0.11 11.8 0.1 0.29 10.5 0.1 1.7 1 0 0 1 1 1 0 KNOX1 domain Prok-RING_1 PF14446.1 gi|305663726|ref|YP_003860014.1| - 0.15 11.8 0.6 0.27 11.0 0.4 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|305663726|ref|YP_003860014.1| - 0.2 10.8 2.7 0.47 9.7 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|305663726|ref|YP_003860014.1| - 0.29 10.2 6.6 1.6 7.9 0.5 2.4 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Zn-ribbon_8 PF09723.5 gi|305663726|ref|YP_003860014.1| - 2 8.4 5.1 13 5.8 3.3 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|305663726|ref|YP_003860014.1| - 3.2 8.3 5.9 33 5.1 0.5 3.3 4 1 0 4 4 4 0 C2H2-type zinc finger Ferritin PF00210.19 gi|305663727|ref|YP_003860015.1| - 2.5e-45 153.6 5.5 2.9e-45 153.5 3.8 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|305663727|ref|YP_003860015.1| - 0.0011 19.3 4.8 0.0015 18.8 3.3 1.3 1 0 0 1 1 1 1 Rubrerythrin Acid_phosphat_B PF03767.9 gi|305663727|ref|YP_003860015.1| - 0.025 13.9 0.1 0.046 13.0 0.0 1.4 1 0 0 1 1 1 0 HAD superfamily, subfamily IIIB (Acid phosphatase) HGD-D PF06050.8 gi|305663727|ref|YP_003860015.1| - 0.062 12.1 0.2 0.082 11.7 0.1 1.1 1 0 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component Metallophos_2 PF12850.2 gi|305663728|ref|YP_003860016.1| - 2e-28 99.1 0.0 2.7e-28 98.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|305663728|ref|YP_003860016.1| - 4.5e-20 71.8 0.9 6.7e-20 71.3 0.6 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase FBPase_2 PF06874.6 gi|305663728|ref|YP_003860016.1| - 0.00017 19.8 1.1 0.0053 14.8 0.2 2.0 1 1 1 2 2 2 2 Firmicute fructose-1,6-bisphosphatase tRNA_m1G_MT PF01746.16 gi|305663728|ref|YP_003860016.1| - 0.057 13.0 0.0 0.092 12.3 0.0 1.3 1 0 0 1 1 1 0 tRNA (Guanine-1)-methyltransferase Synapsin PF02078.11 gi|305663728|ref|YP_003860016.1| - 0.1 12.7 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Synapsin, N-terminal domain Peptidase_U57 PF05582.7 gi|305663728|ref|YP_003860016.1| - 0.15 11.0 0.2 0.23 10.3 0.1 1.2 1 0 0 1 1 1 0 YabG peptidase U57 Pyr_redox_2 PF07992.9 gi|305663729|ref|YP_003860017.1| - 3.4e-31 108.7 0.0 4.7e-31 108.2 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|305663729|ref|YP_003860017.1| - 6.1e-20 72.1 0.5 7.8e-15 55.4 0.0 2.4 2 1 1 3 3 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|305663729|ref|YP_003860017.1| - 3.1e-19 69.1 2.8 1.4e-12 47.7 0.1 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|305663729|ref|YP_003860017.1| - 1.9e-13 50.0 9.0 4.1e-06 25.9 0.7 5.0 3 2 2 5 5 5 3 FAD binding domain DAO PF01266.19 gi|305663729|ref|YP_003860017.1| - 8.9e-12 44.5 1.5 2.7e-05 23.2 0.6 3.1 3 0 0 3 3 3 3 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|305663729|ref|YP_003860017.1| - 1.9e-11 43.0 1.2 0.0011 17.5 0.4 3.2 3 0 0 3 3 3 3 HI0933-like protein FAD_binding_3 PF01494.14 gi|305663729|ref|YP_003860017.1| - 2.6e-10 39.9 0.2 2.7e-07 29.9 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|305663729|ref|YP_003860017.1| - 3e-09 36.7 0.5 2.4e-06 27.4 0.1 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|305663729|ref|YP_003860017.1| - 6.7e-09 35.1 1.1 4.7e-05 22.6 0.1 2.6 3 0 0 3 3 3 2 Thi4 family FAD_oxidored PF12831.2 gi|305663729|ref|YP_003860017.1| - 3.4e-06 26.4 6.8 0.0012 18.0 0.6 4.0 2 2 2 4 4 4 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|305663729|ref|YP_003860017.1| - 7.1e-06 25.1 0.6 0.068 12.0 0.3 3.1 3 0 0 3 3 3 1 Lycopene cyclase protein GIDA PF01134.17 gi|305663729|ref|YP_003860017.1| - 1.1e-05 24.4 6.3 0.0001 21.2 0.2 3.4 4 1 1 5 5 5 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|305663729|ref|YP_003860017.1| - 1.4e-05 25.2 0.3 0.078 13.2 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding K_oxygenase PF13434.1 gi|305663729|ref|YP_003860017.1| - 0.0001 21.3 0.1 0.25 10.2 0.0 3.2 2 1 1 3 3 3 2 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.9 gi|305663729|ref|YP_003860017.1| - 0.00091 17.9 1.0 0.25 9.9 0.3 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Shikimate_DH PF01488.15 gi|305663729|ref|YP_003860017.1| - 0.0018 18.4 0.1 1.2 9.2 0.0 2.3 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_9 PF13454.1 gi|305663729|ref|YP_003860017.1| - 0.0019 17.9 0.4 1.9 8.2 0.2 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding FMO-like PF00743.14 gi|305663729|ref|YP_003860017.1| - 0.0029 15.8 0.0 0.0057 14.9 0.0 1.5 1 1 0 1 1 1 1 Flavin-binding monooxygenase-like NAD_Gly3P_dh_N PF01210.18 gi|305663729|ref|YP_003860017.1| - 0.0072 16.0 0.4 3.2 7.4 0.0 2.4 2 0 0 2 2 2 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|305663729|ref|YP_003860017.1| - 0.094 12.1 2.0 5.2 6.4 0.0 2.4 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA Amino_oxidase PF01593.19 gi|305663729|ref|YP_003860017.1| - 0.1 11.6 0.1 11 4.9 0.0 2.2 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase DUF1122 PF06557.6 gi|305663730|ref|YP_003860018.1| - 5.6e-53 178.5 0.4 6.5e-53 178.3 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) TPP_enzyme_C PF02775.16 gi|305663731|ref|YP_003860019.1| - 1.2e-31 109.3 0.2 1.8e-31 108.7 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|305663731|ref|YP_003860019.1| - 2.2e-10 40.3 0.2 1.1e-09 38.0 0.1 2.0 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal POR_N PF01855.14 gi|305663732|ref|YP_003860020.1| - 9.5e-64 215.0 0.0 1.4e-63 214.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|305663732|ref|YP_003860020.1| - 2.3e-29 102.5 0.0 5.4e-29 101.3 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase Transketolase_C PF02780.15 gi|305663732|ref|YP_003860020.1| - 8.6e-07 28.9 0.0 2e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain TPP_enzyme_N PF02776.13 gi|305663732|ref|YP_003860020.1| - 0.00011 21.7 0.2 0.00039 19.9 0.1 2.0 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain zf-H2C2_5 PF13909.1 gi|305663733|ref|YP_003860021.1| - 0.011 15.8 6.8 0.052 13.8 0.2 2.7 3 0 0 3 3 3 0 C2H2-type zinc-finger domain Transpos_assoc PF13963.1 gi|305663733|ref|YP_003860021.1| - 0.042 13.8 1.1 0.12 12.3 0.1 2.1 2 1 0 2 2 2 0 Transposase-associated domain zf-C2H2_jaz PF12171.3 gi|305663733|ref|YP_003860021.1| - 0.054 13.6 0.3 0.1 12.7 0.2 1.5 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Helicase_C_2 PF13307.1 gi|305663733|ref|YP_003860021.1| - 0.12 12.3 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Helicase C-terminal domain zf-C2H2 PF00096.21 gi|305663733|ref|YP_003860021.1| - 0.17 12.3 0.1 0.17 12.3 0.1 2.0 2 0 0 2 2 2 0 Zinc finger, C2H2 type Fer4_15 PF13459.1 gi|305663734|ref|YP_003860022.1| - 4.2e-14 52.8 1.9 5e-14 52.6 1.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|305663734|ref|YP_003860022.1| - 4.4e-13 49.4 2.5 5.8e-13 49.0 1.7 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|305663734|ref|YP_003860022.1| - 0.0008 19.2 2.6 0.003 17.3 1.8 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305663734|ref|YP_003860022.1| - 0.0018 18.5 0.9 0.0043 17.2 0.7 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|305663734|ref|YP_003860022.1| - 0.002 17.6 8.5 0.17 11.5 0.2 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305663734|ref|YP_003860022.1| - 0.0029 17.9 3.2 0.041 14.2 2.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305663734|ref|YP_003860022.1| - 0.0039 17.1 0.2 0.0059 16.6 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305663734|ref|YP_003860022.1| - 0.0046 16.7 2.8 0.016 14.9 1.9 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|305663734|ref|YP_003860022.1| - 0.017 15.4 0.2 0.025 14.9 0.1 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Plasmod_Pvs28 PF06247.6 gi|305663734|ref|YP_003860022.1| - 0.029 13.9 0.1 0.032 13.8 0.1 1.1 1 0 0 1 1 1 0 Plasmodium ookinete surface protein Pvs28 Fer4_6 PF12837.2 gi|305663734|ref|YP_003860022.1| - 0.11 12.3 7.0 1 9.3 0.2 2.8 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|305663734|ref|YP_003860022.1| - 2.8 8.0 9.0 0.91 9.5 2.3 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Rubrerythrin PF02915.12 gi|305663735|ref|YP_003860023.1| - 1e-29 103.6 2.8 1.2e-29 103.3 1.9 1.1 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.19 gi|305663735|ref|YP_003860023.1| - 0.00011 21.9 0.6 0.00017 21.3 0.4 1.3 1 1 0 1 1 1 1 Ferritin-like domain Rubredoxin PF00301.15 gi|305663735|ref|YP_003860023.1| - 0.0028 17.4 6.6 0.18 11.7 3.8 2.4 1 1 1 2 2 2 2 Rubredoxin zf-Sec23_Sec24 PF04810.10 gi|305663735|ref|YP_003860023.1| - 0.032 13.7 0.8 0.16 11.5 0.1 2.1 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger DUF3279 PF11682.3 gi|305663735|ref|YP_003860023.1| - 0.062 12.8 0.5 0.088 12.3 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) Cys_rich_CPCC PF14206.1 gi|305663735|ref|YP_003860023.1| - 0.076 12.5 3.2 0.14 11.7 2.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPCC PhnA_Zn_Ribbon PF08274.7 gi|305663735|ref|YP_003860023.1| - 0.079 12.7 1.7 0.35 10.7 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF3039 PF11238.3 gi|305663735|ref|YP_003860023.1| - 0.11 11.9 2.0 0.27 10.6 1.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3039) TF_Zn_Ribbon PF08271.7 gi|305663735|ref|YP_003860023.1| - 0.11 11.7 5.0 2.2 7.6 0.3 2.5 2 0 0 2 2 2 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|305663735|ref|YP_003860023.1| - 0.15 11.6 1.1 2.7 7.7 0.0 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|305663735|ref|YP_003860023.1| - 0.16 12.0 2.5 8.1 6.6 0.2 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zinc_ribbon_2 PF13240.1 gi|305663735|ref|YP_003860023.1| - 0.19 11.2 3.4 0.38 10.3 2.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DUF3797 PF12677.2 gi|305663735|ref|YP_003860023.1| - 0.24 11.0 2.1 1.9 8.1 0.0 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ISL3 PF14690.1 gi|305663735|ref|YP_003860023.1| - 0.3 11.1 3.7 8 6.5 0.2 2.6 3 0 0 3 3 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-ribbon_3 PF13248.1 gi|305663735|ref|YP_003860023.1| - 0.62 9.3 5.5 6.2 6.1 3.8 2.2 1 1 0 1 1 1 0 zinc-ribbon domain zf-MIZ PF02891.15 gi|305663735|ref|YP_003860023.1| - 1.2 8.7 5.1 0.58 9.7 0.1 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger Rad50_zn_hook PF04423.9 gi|305663735|ref|YP_003860023.1| - 1.9 7.9 5.6 10 5.6 0.8 2.5 2 0 0 2 2 2 0 Rad50 zinc hook motif zf-RanBP PF00641.13 gi|305663735|ref|YP_003860023.1| - 2.1 7.5 4.7 4 6.6 0.3 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others DNA_ligase_ZBD PF03119.11 gi|305663735|ref|YP_003860023.1| - 3.5 7.4 8.9 3.4 7.4 0.6 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1610 PF07754.6 gi|305663735|ref|YP_003860023.1| - 8.4 6.6 9.1 4.8 7.4 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-C2H2_4 PF13894.1 gi|305663735|ref|YP_003860023.1| - 8.9 6.9 6.1 6.7 7.2 0.1 2.7 3 0 0 3 3 2 0 C2H2-type zinc finger CBS PF00571.23 gi|305663736|ref|YP_003860024.1| - 3.6e-35 119.4 6.7 1.4e-17 63.1 0.1 2.0 2 0 0 2 2 2 2 CBS domain Ribosomal_L9_C PF03948.9 gi|305663736|ref|YP_003860024.1| - 0.0018 18.3 0.1 0.0094 16.0 0.0 2.1 2 1 0 2 2 2 1 Ribosomal protein L9, C-terminal domain Cache_3 PF14827.1 gi|305663736|ref|YP_003860024.1| - 0.012 15.5 0.1 5.7 6.8 0.0 2.3 2 0 0 2 2 2 0 Sensory domain of two-component sensor kinase IF3_N PF05198.11 gi|305663736|ref|YP_003860024.1| - 0.03 14.2 0.2 2.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF3659 PF12396.3 gi|305663736|ref|YP_003860024.1| - 1.5 8.5 4.0 1.9 8.2 0.7 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF3659) NRDE PF05742.7 gi|305663737|ref|YP_003860025.1| - 1.6e-06 27.6 0.0 2.6e-06 26.9 0.0 1.3 1 1 0 1 1 1 1 NRDE protein DFP PF04127.10 gi|305663738|ref|YP_003860026.1| - 1.2e-55 188.0 0.0 5.4e-55 185.8 0.0 1.8 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|305663738|ref|YP_003860026.1| - 7.6e-26 90.3 0.0 1.2e-25 89.6 0.0 1.3 1 0 0 1 1 1 1 Flavoprotein BPD_transp_1 PF00528.17 gi|305663739|ref|YP_003860027.1| - 6.4e-10 38.8 10.5 6.4e-10 38.8 7.3 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2592 PF10766.4 gi|305663739|ref|YP_003860027.1| - 1.7 8.0 6.2 3 7.2 0.9 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2592) BPD_transp_1 PF00528.17 gi|305663740|ref|YP_003860028.1| - 8.7e-27 93.8 18.6 8.7e-27 93.8 12.9 2.6 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|305663741|ref|YP_003860029.1| - 4e-77 259.5 0.0 5.3e-77 259.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PhoU PF01895.14 gi|305663742|ref|YP_003860030.1| - 6.6e-10 39.2 1.4 1.4e-09 38.2 0.3 2.1 2 1 0 2 2 2 1 PhoU domain Antitoxin-MazE PF04014.13 gi|305663742|ref|YP_003860030.1| - 9.6e-08 31.5 1.2 2.3e-07 30.3 0.1 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE Cys_Met_Meta_PP PF01053.15 gi|305663743|ref|YP_003860031.1| - 1.4e-112 375.7 0.0 1.6e-112 375.6 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|305663743|ref|YP_003860031.1| - 0.00027 20.0 0.0 0.00036 19.6 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II GDC-P PF02347.11 gi|305663743|ref|YP_003860031.1| - 0.0024 16.6 0.1 0.0041 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|305663743|ref|YP_003860031.1| - 0.011 14.4 0.0 0.022 13.5 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|305663743|ref|YP_003860031.1| - 0.035 13.1 0.0 0.38 9.7 0.0 2.0 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|305663743|ref|YP_003860031.1| - 0.1 11.7 0.0 1 8.4 0.0 2.1 2 0 0 2 2 2 0 Beta-eliminating lyase HTH_19 PF12844.2 gi|305663744|ref|YP_003860032.1| - 1.1e-05 25.3 0.2 0.00034 20.6 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|305663744|ref|YP_003860032.1| - 4.9e-05 23.0 0.1 0.00026 20.7 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_37 PF13744.1 gi|305663744|ref|YP_003860032.1| - 0.01 15.6 0.1 0.079 12.7 0.0 2.2 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_31 PF13560.1 gi|305663744|ref|YP_003860032.1| - 0.015 15.4 0.0 0.04 14.1 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain NUMOD1 PF07453.8 gi|305663744|ref|YP_003860032.1| - 0.048 13.5 0.1 0.13 12.1 0.1 1.7 1 0 0 1 1 1 0 NUMOD1 domain DUF134 PF02001.11 gi|305663744|ref|YP_003860032.1| - 0.092 12.6 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF134 Cro PF09048.5 gi|305663744|ref|YP_003860032.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Cro TusA PF01206.12 gi|305663745|ref|YP_003860033.1| - 0.079 12.5 0.1 0.13 11.9 0.1 1.4 1 1 0 1 1 1 0 Sulfurtransferase TusA Aminotran_5 PF00266.14 gi|305663746|ref|YP_003860034.1| - 3e-67 226.9 0.0 9.5e-67 225.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|305663746|ref|YP_003860034.1| - 3.9e-08 32.7 0.0 5.4e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.11 gi|305663746|ref|YP_003860034.1| - 0.0057 15.4 0.1 0.008 14.9 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Met_gamma_lyase PF06838.6 gi|305663746|ref|YP_003860034.1| - 0.027 12.7 1.2 0.043 12.1 0.8 1.4 1 1 0 1 1 1 0 Methionine gamma-lyase NifU_N PF01592.11 gi|305663747|ref|YP_003860035.1| - 1e-38 132.1 0.0 1.3e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain TusA PF01206.12 gi|305663748|ref|YP_003860036.1| - 4.1e-14 51.9 0.0 4.9e-14 51.6 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Fer4_6 PF12837.2 gi|305663749|ref|YP_003860037.1| - 4.4e-11 42.1 7.6 1.9e-08 33.7 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.22 gi|305663749|ref|YP_003860037.1| - 3.1e-10 39.2 11.5 3.5e-06 26.3 3.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305663749|ref|YP_003860037.1| - 3.2e-10 40.2 6.3 4.4e-10 39.7 4.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305663749|ref|YP_003860037.1| - 5.1e-09 35.7 12.9 3.4e-07 29.9 5.6 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305663749|ref|YP_003860037.1| - 5.3e-09 35.8 6.3 6.9e-09 35.4 4.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305663749|ref|YP_003860037.1| - 7.7e-09 35.6 5.6 1e-08 35.2 3.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|305663749|ref|YP_003860037.1| - 2.2e-08 33.5 8.7 3e-06 26.8 2.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|305663749|ref|YP_003860037.1| - 2.1e-07 31.6 2.5 0.009 16.7 0.8 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|305663749|ref|YP_003860037.1| - 1.5e-05 25.2 0.8 0.015 15.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|305663749|ref|YP_003860037.1| - 1.6e-05 25.3 9.2 0.00059 20.3 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|305663749|ref|YP_003860037.1| - 1.8e-05 24.9 13.8 0.013 16.0 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|305663749|ref|YP_003860037.1| - 3.1e-05 23.9 9.2 0.0029 17.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|305663749|ref|YP_003860037.1| - 4.9e-05 23.6 6.2 0.0042 17.4 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305663749|ref|YP_003860037.1| - 0.00013 21.9 6.0 0.0003 20.7 4.2 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|305663749|ref|YP_003860037.1| - 0.017 15.4 9.4 0.027 14.8 2.1 2.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|305663749|ref|YP_003860037.1| - 0.044 13.6 2.4 0.15 11.9 1.7 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|305663749|ref|YP_003860037.1| - 0.14 12.0 7.0 4.5 7.1 4.8 2.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster FeS PF04060.8 gi|305663749|ref|YP_003860037.1| - 0.14 11.7 3.3 0.16 11.5 0.6 2.2 2 1 0 2 2 2 0 Putative Fe-S cluster Baculo_LEF-2 PF03041.9 gi|305663749|ref|YP_003860037.1| - 0.45 10.1 3.8 0.17 11.5 0.7 1.7 1 1 1 2 2 2 0 lef-2 AFP PF02420.10 gi|305663749|ref|YP_003860037.1| - 1.5 9.1 5.0 5.3 7.5 3.4 1.9 1 0 0 1 1 1 0 Insect antifreeze protein repeat Ecl1 PF12855.2 gi|305663750|ref|YP_003860038.1| - 0.016 14.4 5.8 0.03 13.6 4.0 1.4 1 0 0 1 1 1 0 Life-span regulatory factor MerB PF03243.10 gi|305663750|ref|YP_003860038.1| - 0.063 13.1 0.4 0.062 13.1 0.3 1.1 1 0 0 1 1 1 0 Alkylmercury lyase zf-C3HC4_2 PF13923.1 gi|305663750|ref|YP_003860038.1| - 0.073 13.1 5.0 0.11 12.5 3.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Desulfoferrod_N PF06397.7 gi|305663750|ref|YP_003860038.1| - 0.097 12.0 0.2 0.097 12.0 0.2 1.6 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF329 PF03884.9 gi|305663750|ref|YP_003860038.1| - 0.18 11.4 6.9 0.36 10.4 4.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF329) zf-FCS PF06467.9 gi|305663750|ref|YP_003860038.1| - 5.8 6.6 10.5 79 3.0 7.3 2.4 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.4 gi|305663750|ref|YP_003860038.1| - 8.2 6.3 10.8 1.5e+02 2.2 7.5 2.2 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Sushi_2 PF09014.5 gi|305663751|ref|YP_003860039.1| - 0.02 14.6 0.1 0.032 14.0 0.1 1.3 1 0 0 1 1 1 0 Beta-2-glycoprotein-1 fifth domain HD_3 PF13023.1 gi|305663752|ref|YP_003860040.1| - 6.6e-18 64.9 0.0 8.9e-18 64.5 0.0 1.3 1 1 0 1 1 1 1 HD domain HD PF01966.17 gi|305663752|ref|YP_003860040.1| - 7.8e-06 25.9 0.3 1.9e-05 24.6 0.2 1.7 1 1 0 1 1 1 1 HD domain HDOD PF08668.7 gi|305663752|ref|YP_003860040.1| - 0.001 18.3 0.0 0.0013 18.0 0.0 1.3 1 0 0 1 1 1 1 HDOD domain HD_2 PF12917.2 gi|305663752|ref|YP_003860040.1| - 0.0024 17.6 1.0 0.0034 17.1 0.7 1.4 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme YHS PF04945.8 gi|305663753|ref|YP_003860041.1| - 1.9e-19 69.2 1.3 2.2e-19 68.9 0.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|305663753|ref|YP_003860041.1| - 0.00022 21.3 2.9 0.00032 20.7 2.0 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.9 gi|305663753|ref|YP_003860041.1| - 0.002 17.7 1.4 0.0024 17.4 1.0 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Ribosomal_L24e PF01246.15 gi|305663753|ref|YP_003860041.1| - 0.0046 16.7 0.3 0.0053 16.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e RPAP2_Rtr1 PF04181.8 gi|305663753|ref|YP_003860041.1| - 0.036 14.1 0.6 0.043 13.8 0.4 1.1 1 0 0 1 1 1 0 Rtr1/RPAP2 family DUF2116 PF09889.4 gi|305663753|ref|YP_003860041.1| - 0.089 12.6 4.3 0.42 10.4 2.9 2.0 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) E1-E2_ATPase PF00122.15 gi|305663754|ref|YP_003860042.1| - 9.8e-47 158.9 0.7 2.2e-46 157.7 0.5 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|305663754|ref|YP_003860042.1| - 2.5e-42 145.7 0.0 3.8e-42 145.1 0.0 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|305663754|ref|YP_003860042.1| - 7.7e-17 62.0 0.1 2.6e-16 60.3 0.1 2.0 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|305663754|ref|YP_003860042.1| - 1.9e-10 40.6 0.0 5.7e-10 39.1 0.0 1.9 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|305663754|ref|YP_003860042.1| - 1.4e-08 34.6 3.0 0.00022 20.8 0.1 2.8 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Methyltransf_24 PF13578.1 gi|305663755|ref|YP_003860043.1| - 4e-12 46.9 0.0 5.7e-12 46.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|305663755|ref|YP_003860043.1| - 2.4e-11 43.0 0.1 2.9e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_18 PF12847.2 gi|305663755|ref|YP_003860043.1| - 2e-08 34.8 0.0 2.9e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305663755|ref|YP_003860043.1| - 9.5e-07 28.8 0.0 1.8e-06 27.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663755|ref|YP_003860043.1| - 7.7e-06 25.5 0.1 9.4e-06 25.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.1 gi|305663755|ref|YP_003860043.1| - 0.00022 20.9 0.0 0.00031 20.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|305663755|ref|YP_003860043.1| - 0.00032 20.3 0.1 0.00041 19.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein GidB PF02527.10 gi|305663755|ref|YP_003860043.1| - 0.0014 17.8 0.0 0.0024 17.0 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G UPF0146 PF03686.8 gi|305663755|ref|YP_003860043.1| - 0.0018 18.1 0.6 0.29 10.9 0.1 2.3 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0146) MTS PF05175.9 gi|305663755|ref|YP_003860043.1| - 0.013 14.8 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain CMAS PF02353.15 gi|305663755|ref|YP_003860043.1| - 0.013 14.5 0.1 0.017 14.2 0.0 1.1 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_11 PF08241.7 gi|305663755|ref|YP_003860043.1| - 0.027 14.9 0.0 0.043 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|305663755|ref|YP_003860043.1| - 0.028 13.8 0.0 0.034 13.5 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 PCMT PF01135.14 gi|305663755|ref|YP_003860043.1| - 0.029 13.8 0.1 0.048 13.1 0.1 1.4 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_21 PF05050.7 gi|305663755|ref|YP_003860043.1| - 0.035 14.0 0.1 0.13 12.2 0.0 1.7 1 1 1 2 2 2 0 Methyltransferase FkbM domain TRM13 PF05206.9 gi|305663755|ref|YP_003860043.1| - 0.051 12.8 0.0 0.07 12.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase TRM13 Methyltransf_15 PF09445.5 gi|305663755|ref|YP_003860043.1| - 0.067 12.7 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AA_kinase PF00696.23 gi|305663758|ref|YP_003860046.1| - 6.3e-33 114.3 0.1 7.7e-33 114.0 0.1 1.1 1 0 0 1 1 1 1 Amino acid kinase family AAA_14 PF13173.1 gi|305663758|ref|YP_003860046.1| - 0.12 12.2 0.0 5.9 6.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Nitroreductase PF00881.19 gi|305663759|ref|YP_003860047.1| - 1.8e-34 118.9 0.0 2.3e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.1 gi|305663759|ref|YP_003860047.1| - 0.041 13.0 0.3 0.14 11.3 0.1 1.9 2 0 0 2 2 2 0 Putative TM nitroreductase DUF1951 PF09188.5 gi|305663759|ref|YP_003860047.1| - 0.1 12.5 0.1 0.26 11.2 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF1951) MS_channel PF00924.13 gi|305663760|ref|YP_003860048.1| - 1.4e-58 197.6 7.7 2.2e-58 196.9 5.4 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel DUF1625 PF07787.7 gi|305663760|ref|YP_003860048.1| - 1.7 7.8 6.0 1.2 8.3 3.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1625) DUF432 PF04254.8 gi|305663761|ref|YP_003860049.1| - 2.4e-22 79.1 1.6 3.7e-22 78.5 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF432) DUF95 PF01944.12 gi|305663762|ref|YP_003860050.1| - 2.8e-32 111.7 22.0 3.2e-32 111.5 15.2 1.0 1 0 0 1 1 1 1 Integral membrane protein DUF95 RecR PF02132.10 gi|305663763|ref|YP_003860051.1| - 0.02 14.3 0.4 3.5 7.1 0.0 2.1 2 0 0 2 2 2 0 RecR protein NOB1_Zn_bind PF08772.6 gi|305663763|ref|YP_003860051.1| - 0.029 14.1 2.3 0.054 13.3 1.6 1.4 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like zf-BED PF02892.10 gi|305663763|ref|YP_003860051.1| - 0.049 13.4 1.4 2.7 7.8 0.1 2.2 2 0 0 2 2 2 0 BED zinc finger Elf1 PF05129.8 gi|305663763|ref|YP_003860051.1| - 0.055 13.1 0.3 0.065 12.9 0.2 1.1 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like Terminase_GpA PF05876.7 gi|305663763|ref|YP_003860051.1| - 0.057 11.7 1.0 0.085 11.2 0.7 1.4 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_5 PF13719.1 gi|305663763|ref|YP_003860051.1| - 0.078 12.5 0.4 0.078 12.5 0.3 1.8 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|305663763|ref|YP_003860051.1| - 0.13 11.7 0.1 0.13 11.7 0.1 1.9 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Tnp_zf-ribbon_2 PF13842.1 gi|305663763|ref|YP_003860051.1| - 0.14 12.6 2.2 5.7 7.4 0.7 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zinc_ribbon_4 PF13717.1 gi|305663763|ref|YP_003860051.1| - 0.16 11.6 0.8 0.16 11.6 0.6 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|305663763|ref|YP_003860051.1| - 0.2 11.5 3.8 0.63 9.9 2.6 1.7 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain DUF3624 PF12292.3 gi|305663763|ref|YP_003860051.1| - 0.21 12.0 1.5 5.8 7.3 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3624) zf-Sec23_Sec24 PF04810.10 gi|305663763|ref|YP_003860051.1| - 2.2 7.9 4.4 14 5.2 3.0 2.1 1 1 0 1 1 1 0 Sec23/Sec24 zinc finger tRNA-synt_1d PF00750.14 gi|305663765|ref|YP_003860053.1| - 2e-46 158.4 0.4 2.9e-28 98.7 0.0 2.3 1 1 1 2 2 2 2 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|305663765|ref|YP_003860053.1| - 7.4e-29 100.1 0.1 3.1e-28 98.1 0.1 2.1 1 0 0 1 1 1 1 DALR anticodon binding domain tRNA-synt_1e PF01406.14 gi|305663765|ref|YP_003860053.1| - 0.013 14.6 0.0 0.24 10.4 0.0 2.3 2 1 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.6 gi|305663765|ref|YP_003860053.1| - 0.036 12.7 0.1 3.1 6.3 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1 PF00133.17 gi|305663765|ref|YP_003860053.1| - 0.038 11.9 1.3 8.4 4.2 0.0 3.0 3 0 0 3 3 3 0 tRNA synthetases class I (I, L, M and V) tRNA-synt_1f PF01921.13 gi|305663765|ref|YP_003860053.1| - 0.053 12.1 0.2 2.2 6.8 0.0 2.9 3 0 0 3 3 3 0 tRNA synthetases class I (K) Arg_tRNA_synt_N PF03485.11 gi|305663765|ref|YP_003860053.1| - 0.18 12.4 0.9 3.4 8.2 0.0 3.2 3 0 0 3 3 3 0 Arginyl tRNA synthetase N terminal domain ComX PF05952.7 gi|305663765|ref|YP_003860053.1| - 0.2 11.1 1.1 10 5.7 0.0 3.6 3 1 1 4 4 4 0 Bacillus competence pheromone ComX RcbX PF02341.10 gi|305663766|ref|YP_003860054.1| - 0.053 13.6 0.0 0.062 13.4 0.0 1.2 1 0 0 1 1 1 0 RbcX protein RNA_POL_M_15KD PF02150.11 gi|305663767|ref|YP_003860055.1| - 6.3e-08 32.1 0.3 1e-07 31.4 0.2 1.4 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.1 gi|305663767|ref|YP_003860055.1| - 0.00027 20.2 3.2 0.1 12.1 0.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|305663767|ref|YP_003860055.1| - 0.00045 19.6 3.0 0.0026 17.2 2.0 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain DUF2387 PF09526.5 gi|305663767|ref|YP_003860055.1| - 0.0012 18.7 0.3 0.0019 18.0 0.2 1.5 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) DZR PF12773.2 gi|305663767|ref|YP_003860055.1| - 0.0016 18.2 0.5 0.0028 17.4 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|305663767|ref|YP_003860055.1| - 0.0031 16.8 0.4 0.0061 15.8 0.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|305663767|ref|YP_003860055.1| - 0.0033 16.5 0.7 0.006 15.7 0.5 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|305663767|ref|YP_003860055.1| - 0.0045 16.1 1.2 0.64 9.3 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|305663767|ref|YP_003860055.1| - 0.0049 16.5 2.4 1.5 8.5 0.0 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|305663767|ref|YP_003860055.1| - 0.022 14.4 0.2 0.044 13.4 0.2 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Elf1 PF05129.8 gi|305663767|ref|YP_003860055.1| - 0.03 13.9 1.5 0.032 13.9 0.1 1.7 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like DUF2318 PF10080.4 gi|305663767|ref|YP_003860055.1| - 0.036 13.8 0.3 0.041 13.6 0.2 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Rubredoxin PF00301.15 gi|305663767|ref|YP_003860055.1| - 0.041 13.7 0.8 0.88 9.4 0.0 2.3 2 0 0 2 2 2 0 Rubredoxin Cys_rich_CPCC PF14206.1 gi|305663767|ref|YP_003860055.1| - 0.051 13.1 0.1 0.061 12.8 0.0 1.1 1 0 0 1 1 1 0 Cysteine-rich CPCC zf-IS66 PF13005.2 gi|305663767|ref|YP_003860055.1| - 0.076 13.0 2.5 0.47 10.4 0.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 IBR PF01485.16 gi|305663767|ref|YP_003860055.1| - 0.085 12.7 0.2 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 IBR domain TFIIS_C PF01096.13 gi|305663767|ref|YP_003860055.1| - 0.095 12.3 1.3 1.6 8.4 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C4_Topoisom PF01396.14 gi|305663767|ref|YP_003860055.1| - 0.099 12.1 0.8 3.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF1936 PF09151.5 gi|305663767|ref|YP_003860055.1| - 0.1 12.1 1.9 0.21 11.1 1.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF1936) Nudix_N_2 PF14803.1 gi|305663767|ref|YP_003860055.1| - 0.1 12.2 3.2 0.35 10.5 2.2 1.9 1 1 1 2 2 2 0 Nudix N-terminal C1_1 PF00130.17 gi|305663767|ref|YP_003860055.1| - 0.11 12.2 0.5 0.16 11.7 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Lar_restr_allev PF14354.1 gi|305663767|ref|YP_003860055.1| - 0.11 12.7 0.1 0.23 11.8 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF1272 PF06906.6 gi|305663767|ref|YP_003860055.1| - 0.14 12.0 0.7 6.3 6.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DUF1610 PF07754.6 gi|305663767|ref|YP_003860055.1| - 0.27 11.3 2.0 6.7 6.9 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|305663767|ref|YP_003860055.1| - 0.3 10.9 1.4 0.87 9.4 1.0 1.7 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Zn_ribbon_recom PF13408.1 gi|305663767|ref|YP_003860055.1| - 0.33 11.2 5.3 7.1 6.9 3.7 2.4 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|305663767|ref|YP_003860055.1| - 0.34 10.4 2.2 0.93 9.0 1.5 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_4 PF13717.1 gi|305663767|ref|YP_003860055.1| - 0.34 10.6 1.6 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|305663767|ref|YP_003860055.1| - 0.98 9.5 3.8 36 4.4 2.8 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NOB1_Zn_bind PF08772.6 gi|305663767|ref|YP_003860055.1| - 2.7 7.8 6.1 15 5.4 3.3 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|305663767|ref|YP_003860055.1| - 6.1 6.8 5.8 30 4.6 0.3 2.4 1 1 0 2 2 2 0 Zinc ribbon domain SIS PF01380.17 gi|305663768|ref|YP_003860056.1| - 0.014 15.0 0.1 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 SIS domain DUF4435 PF14491.1 gi|305663768|ref|YP_003860056.1| - 0.14 11.9 3.7 0.48 10.1 2.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4435) Flavoprotein PF02441.14 gi|305663769|ref|YP_003860057.1| - 2.4e-23 82.2 0.0 3.2e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Flavoprotein tRNA_int_endo PF01974.12 gi|305663771|ref|YP_003860059.1| - 1.1e-28 98.8 0.0 1.5e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|305663771|ref|YP_003860059.1| - 0.075 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 tRNA intron endonuclease, N-terminal domain GLYCAM-1 PF05242.6 gi|305663772|ref|YP_003860060.1| - 0.075 12.9 1.8 0.71 9.8 0.0 3.0 3 1 0 3 3 3 0 Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) FANCI_S2 PF14676.1 gi|305663772|ref|YP_003860060.1| - 0.18 11.7 9.4 0.096 12.5 3.1 2.3 2 1 0 2 2 2 0 FANCI solenoid 2 Vip3A_N PF12495.3 gi|305663772|ref|YP_003860060.1| - 0.34 10.5 11.5 0.11 12.2 4.1 2.2 1 1 1 2 2 2 0 Vegetative insecticide protein 3A N terminal Baculo_PEP_C PF04513.7 gi|305663772|ref|YP_003860060.1| - 1 9.1 7.4 0.74 9.6 0.1 2.9 2 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus LAGLIDADG_WhiA PF14527.1 gi|305663772|ref|YP_003860060.1| - 2.3 8.1 7.3 1.1 9.2 0.8 2.8 3 1 0 3 3 3 0 WhiA LAGLIDADG-like domain Molydop_binding PF01568.16 gi|305663774|ref|YP_003860062.1| - 0.00016 21.4 0.0 0.095 12.5 0.0 2.2 1 1 1 2 2 2 2 Molydopterin dinucleotide binding domain SARG PF15385.1 gi|305663774|ref|YP_003860062.1| - 0.039 13.3 0.4 0.041 13.2 0.3 1.1 1 0 0 1 1 1 0 Specifically androgen-regulated gene protein QueC PF06508.8 gi|305663774|ref|YP_003860062.1| - 0.1 11.9 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA-synt_2b PF00587.20 gi|305663775|ref|YP_003860063.1| - 2.8e-47 160.5 0.2 3.9e-47 160.0 0.2 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|305663775|ref|YP_003860063.1| - 4.2e-18 65.0 0.1 1.2e-17 63.6 0.1 1.7 1 0 0 1 1 1 1 Anticodon binding domain Rad50_zn_hook PF04423.9 gi|305663775|ref|YP_003860063.1| - 0.023 14.1 0.1 0.056 12.9 0.0 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-4CXXC_R1 PF10497.4 gi|305663775|ref|YP_003860063.1| - 0.041 14.0 0.1 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 Zinc-finger domain of monoamine-oxidase A repressor R1 Arginase PF00491.16 gi|305663776|ref|YP_003860064.1| - 5.8e-64 216.0 0.0 6.8e-64 215.8 0.0 1.0 1 0 0 1 1 1 1 Arginase family TFIIB PF00382.14 gi|305663777|ref|YP_003860065.1| - 2.8e-37 126.3 5.4 2.3e-18 65.7 0.2 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|305663777|ref|YP_003860065.1| - 6.1e-10 38.2 0.1 1e-09 37.5 0.0 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.1 gi|305663777|ref|YP_003860065.1| - 1.6e-07 30.7 2.2 6.3e-05 22.4 0.1 3.3 3 1 0 3 3 3 2 AsnC-type helix-turn-helix domain Cyclin_N PF00134.18 gi|305663777|ref|YP_003860065.1| - 1.1e-06 28.2 0.3 0.0028 17.2 0.1 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain Sigma70_r4 PF04545.11 gi|305663777|ref|YP_003860065.1| - 1.3e-05 24.3 2.7 0.0054 16.0 0.1 4.1 4 0 0 4 4 4 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|305663777|ref|YP_003860065.1| - 0.00019 20.7 2.9 0.014 14.7 0.1 3.2 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding Cyclin_C PF02984.14 gi|305663777|ref|YP_003860065.1| - 0.00023 21.1 0.0 0.62 10.0 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain HTH_11 PF08279.7 gi|305663777|ref|YP_003860065.1| - 0.00031 20.3 1.2 0.53 9.9 0.0 3.0 3 0 0 3 3 3 2 HTH domain Exonuc_VII_S PF02609.11 gi|305663777|ref|YP_003860065.1| - 0.0004 20.1 0.3 0.02 14.6 0.1 2.5 2 0 0 2 2 2 1 Exonuclease VII small subunit Sigma70_r4_2 PF08281.7 gi|305663777|ref|YP_003860065.1| - 0.0047 16.3 5.6 0.22 11.0 0.0 3.6 4 0 0 4 4 4 2 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|305663777|ref|YP_003860065.1| - 0.0098 15.0 0.8 0.5 9.6 0.1 3.3 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.14 gi|305663777|ref|YP_003860065.1| - 0.025 13.8 2.0 6 6.2 0.0 3.1 4 0 0 4 4 4 0 Bacterial regulatory proteins, luxR family DUF746 PF05344.6 gi|305663777|ref|YP_003860065.1| - 0.028 13.9 0.3 0.38 10.3 0.1 2.9 2 1 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Crp_2 PF13545.1 gi|305663777|ref|YP_003860065.1| - 0.03 14.1 0.8 7.9 6.3 0.1 3.3 4 0 0 4 4 4 0 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|305663777|ref|YP_003860065.1| - 0.085 12.6 1.3 0.16 11.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Haem_oxygenas_2 PF14518.1 gi|305663777|ref|YP_003860065.1| - 0.089 12.9 0.0 0.22 11.7 0.0 1.6 1 0 0 1 1 1 0 Iron-containing redox enzyme HTH_23 PF13384.1 gi|305663777|ref|YP_003860065.1| - 0.099 12.3 8.9 0.12 12.1 0.1 4.1 5 0 0 5 5 5 0 Homeodomain-like domain Terminase_5 PF06056.7 gi|305663777|ref|YP_003860065.1| - 0.92 9.1 4.1 34 4.1 0.0 3.8 4 1 1 5 5 5 0 Putative ATPase subunit of terminase (gpP-like) TrmB PF01978.14 gi|305663777|ref|YP_003860065.1| - 2.6 7.8 4.9 1.6 8.4 0.2 2.9 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB DNA_RNApol_7kD PF03604.8 gi|305663778|ref|YP_003860066.1| - 2.8e-08 33.0 3.1 5.3e-08 32.1 2.1 1.5 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|305663778|ref|YP_003860066.1| - 3.8e-05 22.7 0.1 0.029 13.5 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|305663778|ref|YP_003860066.1| - 0.00032 20.5 1.8 0.00063 19.6 1.2 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-C2H2 PF00096.21 gi|305663778|ref|YP_003860066.1| - 0.00069 19.8 1.2 0.4 11.1 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|305663778|ref|YP_003860066.1| - 0.0016 17.8 3.8 0.015 14.8 2.6 2.0 1 1 1 2 2 2 2 zinc-ribbon domain HypA PF01155.14 gi|305663778|ref|YP_003860066.1| - 0.0018 17.9 0.2 0.0018 17.9 0.1 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|305663778|ref|YP_003860066.1| - 0.0022 17.9 0.3 0.0022 17.9 0.2 1.1 1 0 0 1 1 1 1 Zn-ribbon containing protein (DUF2072) DZR PF12773.2 gi|305663778|ref|YP_003860066.1| - 0.0022 17.7 0.4 0.0045 16.7 0.3 1.5 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|305663778|ref|YP_003860066.1| - 0.0053 16.1 0.5 0.83 9.1 0.1 2.1 2 0 0 2 2 2 1 A2L zinc ribbon domain zf-C2H2_4 PF13894.1 gi|305663778|ref|YP_003860066.1| - 0.0058 16.8 0.5 3.4 8.2 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|305663778|ref|YP_003860066.1| - 0.0072 15.9 2.0 1.5 8.5 0.3 2.1 2 0 0 2 2 2 1 zinc-finger of a C2HC-type Cys_rich_CPCC PF14206.1 gi|305663778|ref|YP_003860066.1| - 0.016 14.7 0.3 0.062 12.8 0.0 1.8 2 0 0 2 2 2 0 Cysteine-rich CPCC UPF0547 PF10571.4 gi|305663778|ref|YP_003860066.1| - 0.017 14.8 2.9 0.23 11.1 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ISL3 PF14690.1 gi|305663778|ref|YP_003860066.1| - 0.02 14.9 1.0 0.15 12.0 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|305663778|ref|YP_003860066.1| - 0.021 14.3 1.4 0.63 9.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain XPA_N PF01286.13 gi|305663778|ref|YP_003860066.1| - 0.021 14.4 0.3 0.021 14.4 0.2 1.5 2 0 0 2 2 1 0 XPA protein N-terminal zf-H2C2_2 PF13465.1 gi|305663778|ref|YP_003860066.1| - 0.022 15.0 0.9 2.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-Di19 PF05605.7 gi|305663778|ref|YP_003860066.1| - 0.025 14.7 0.3 1.4 9.1 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_4 PF13717.1 gi|305663778|ref|YP_003860066.1| - 0.035 13.7 1.5 0.87 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|305663778|ref|YP_003860066.1| - 0.035 13.7 2.7 0.86 9.2 0.1 2.3 2 1 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C3HC4_3 PF13920.1 gi|305663778|ref|YP_003860066.1| - 0.036 13.7 0.7 0.047 13.3 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Tnp_zf-ribbon_2 PF13842.1 gi|305663778|ref|YP_003860066.1| - 0.04 14.3 1.3 2.6 8.5 0.1 2.1 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon Zn_ribbon_recom PF13408.1 gi|305663778|ref|YP_003860066.1| - 0.041 14.1 1.6 0.14 12.4 0.1 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|305663778|ref|YP_003860066.1| - 0.052 13.3 2.6 1.5 8.6 0.3 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain YhfH PF14149.1 gi|305663778|ref|YP_003860066.1| - 0.062 13.1 0.2 0.9 9.3 0.0 2.0 2 0 0 2 2 2 0 YhfH-like protein DUF329 PF03884.9 gi|305663778|ref|YP_003860066.1| - 0.069 12.7 0.4 0.66 9.5 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) zf-CHY PF05495.7 gi|305663778|ref|YP_003860066.1| - 0.07 13.2 0.5 0.071 13.2 0.3 1.1 1 0 0 1 1 1 0 CHY zinc finger FYDLN_acid PF09538.5 gi|305663778|ref|YP_003860066.1| - 0.071 13.6 0.5 0.47 11.0 0.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) Prok-RING_1 PF14446.1 gi|305663778|ref|YP_003860066.1| - 0.082 12.6 1.0 1.3 8.8 0.8 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Rubredoxin PF00301.15 gi|305663778|ref|YP_003860066.1| - 0.082 12.7 2.9 4.4 7.2 0.3 2.1 1 1 1 2 2 2 0 Rubredoxin Nudix_N_2 PF14803.1 gi|305663778|ref|YP_003860066.1| - 0.084 12.5 0.8 6.2 6.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal GFA PF04828.9 gi|305663778|ref|YP_003860066.1| - 0.085 12.8 0.8 1.5 8.7 0.0 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2HC5 PF06221.8 gi|305663778|ref|YP_003860066.1| - 0.094 12.4 1.2 0.22 11.3 0.8 1.6 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type SprT-like PF10263.4 gi|305663778|ref|YP_003860066.1| - 0.097 12.3 0.5 0.1 12.2 0.4 1.0 1 0 0 1 1 1 0 SprT-like family zf-HIT PF04438.11 gi|305663778|ref|YP_003860066.1| - 0.1 12.2 3.5 1.1 8.9 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-AN1 PF01428.11 gi|305663778|ref|YP_003860066.1| - 0.12 12.2 0.6 2.7 7.9 0.0 2.1 2 0 0 2 2 2 0 AN1-like Zinc finger zf-RING_2 PF13639.1 gi|305663778|ref|YP_003860066.1| - 0.14 12.0 0.4 0.2 11.5 0.2 1.2 1 0 0 1 1 1 0 Ring finger domain zf-LITAF-like PF10601.4 gi|305663778|ref|YP_003860066.1| - 0.16 11.8 0.6 0.62 9.9 0.1 1.9 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF2082 PF09855.4 gi|305663778|ref|YP_003860066.1| - 0.16 11.8 2.5 4 7.3 0.1 2.1 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) OrfB_Zn_ribbon PF07282.6 gi|305663778|ref|YP_003860066.1| - 0.18 11.4 1.1 5.6 6.6 0.1 1.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain CpXC PF14353.1 gi|305663778|ref|YP_003860066.1| - 0.2 11.6 1.4 2.8 7.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Lar_restr_allev PF14354.1 gi|305663778|ref|YP_003860066.1| - 0.27 11.5 1.1 0.68 10.2 0.8 1.7 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-BED PF02892.10 gi|305663778|ref|YP_003860066.1| - 0.31 10.8 3.5 2.4 8.0 0.1 2.1 1 1 1 2 2 2 0 BED zinc finger TF_Zn_Ribbon PF08271.7 gi|305663778|ref|YP_003860066.1| - 0.6 9.4 4.2 8.5 5.7 3.0 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2296 PF10058.4 gi|305663778|ref|YP_003860066.1| - 0.78 9.5 3.9 12 5.6 2.7 2.1 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) PyrI_C PF02748.10 gi|305663778|ref|YP_003860066.1| - 0.91 9.0 3.5 1.8 8.0 0.2 2.1 1 1 1 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain zf-CCHC PF00098.18 gi|305663778|ref|YP_003860066.1| - 5.6 7.0 6.1 4.9 7.2 0.3 2.2 2 0 0 2 2 2 0 Zinc knuckle SUI1 PF01253.17 gi|305663779|ref|YP_003860067.1| - 2.9e-24 84.6 2.0 3.3e-24 84.4 1.4 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|305663779|ref|YP_003860067.1| - 0.0024 18.0 0.8 0.0039 17.3 0.5 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) eIF-5_eIF-2B PF01873.12 gi|305663779|ref|YP_003860067.1| - 0.11 12.1 0.2 0.17 11.5 0.1 1.3 1 1 0 1 1 1 0 Domain found in IF2B/IF5 PALP PF00291.20 gi|305663780|ref|YP_003860068.1| - 2.2e-84 283.3 0.1 2.6e-84 283.0 0.1 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|305663780|ref|YP_003860068.1| - 6.9e-08 31.8 0.0 2.3e-07 30.1 0.0 1.9 1 0 0 1 1 1 1 ACT domain ACT_6 PF13740.1 gi|305663780|ref|YP_003860068.1| - 0.00067 19.3 0.0 0.0018 17.9 0.0 1.7 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|305663780|ref|YP_003860068.1| - 0.0057 16.9 0.0 0.024 14.9 0.0 2.0 2 0 0 2 2 2 1 ACT domain PA PF02225.17 gi|305663780|ref|YP_003860068.1| - 0.37 10.5 2.7 2 8.1 0.6 2.6 1 1 1 2 2 2 0 PA domain RimK PF08443.6 gi|305663781|ref|YP_003860069.1| - 3.7e-46 157.0 0.0 4.8e-46 156.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|305663781|ref|YP_003860069.1| - 2.6e-16 59.8 0.0 3.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|305663781|ref|YP_003860069.1| - 7.8e-13 47.9 0.0 1.2e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305663781|ref|YP_003860069.1| - 5.7e-10 39.2 0.0 8.5e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_YheCD PF14398.1 gi|305663781|ref|YP_003860069.1| - 0.00012 21.0 0.0 0.0024 16.7 0.0 2.2 1 1 0 2 2 2 1 YheC/D like ATP-grasp ATPgrasp_Ter PF15632.1 gi|305663781|ref|YP_003860069.1| - 0.00049 18.9 0.0 0.0011 17.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|305663781|ref|YP_003860069.1| - 0.0014 18.0 0.1 0.0054 16.1 0.1 1.8 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|305663781|ref|YP_003860069.1| - 0.0027 16.8 0.0 1.2 8.1 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Ins134_P3_kin PF05770.6 gi|305663781|ref|YP_003860069.1| - 0.018 14.0 0.0 0.64 8.9 0.0 2.1 1 1 1 2 2 2 0 Inositol 1, 3, 4-trisphosphate 5/6-kinase DUF1614 PF07758.6 gi|305663782|ref|YP_003860070.1| - 2e-05 24.4 2.6 2.4e-05 24.1 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1614) VirJ PF06057.6 gi|305663782|ref|YP_003860070.1| - 0.14 11.9 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial virulence protein (VirJ) GvpK PF05121.7 gi|305663783|ref|YP_003860071.1| - 0.14 12.0 0.2 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Gas vesicle protein K DUF3289 PF11692.3 gi|305663784|ref|YP_003860072.1| - 0.0046 16.2 0.9 0.0073 15.6 0.6 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3289) Baculo_p24 PF05073.7 gi|305663784|ref|YP_003860072.1| - 0.072 12.6 0.1 0.27 10.7 0.0 1.8 2 0 0 2 2 2 0 Baculovirus P24 capsid protein Metallophos PF00149.23 gi|305663785|ref|YP_003860073.1| - 5.4e-09 35.7 0.0 7.9e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|305663785|ref|YP_003860073.1| - 5.5e-07 29.5 0.0 7.9e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Prok-RING_1 PF14446.1 gi|305663786|ref|YP_003860074.1| - 0.00016 21.3 3.4 0.0019 17.9 0.9 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 zf-Di19 PF05605.7 gi|305663786|ref|YP_003860074.1| - 0.0025 17.9 5.7 1.1 9.4 0.0 3.1 2 1 1 3 3 3 1 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.1 gi|305663786|ref|YP_003860074.1| - 0.0032 17.6 4.5 1.1 9.6 0.1 3.3 3 0 0 3 3 3 1 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|305663786|ref|YP_003860074.1| - 0.02 14.8 1.6 0.02 14.8 1.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|305663786|ref|YP_003860074.1| - 0.022 14.4 9.8 1.4 8.6 6.8 2.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.7 gi|305663786|ref|YP_003860074.1| - 0.052 13.3 6.9 1.3 8.8 4.8 2.2 1 1 0 1 1 1 0 zinc-ribbons C1_3 PF07649.7 gi|305663786|ref|YP_003860074.1| - 0.055 13.5 3.0 0.055 13.5 2.1 2.7 3 0 0 3 3 3 0 C1-like domain zf-RING_2 PF13639.1 gi|305663786|ref|YP_003860074.1| - 0.075 12.8 6.3 0.11 12.3 4.3 1.3 1 0 0 1 1 1 0 Ring finger domain HypA PF01155.14 gi|305663786|ref|YP_003860074.1| - 0.095 12.3 4.4 0.19 11.4 0.5 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_4 PF13717.1 gi|305663786|ref|YP_003860074.1| - 0.12 12.1 8.6 1.2 8.8 4.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-BED PF02892.10 gi|305663786|ref|YP_003860074.1| - 0.12 12.1 9.4 1 9.1 0.3 2.5 1 1 0 2 2 2 0 BED zinc finger SprT-like PF10263.4 gi|305663786|ref|YP_003860074.1| - 0.13 11.9 3.4 0.15 11.7 2.4 1.3 1 1 0 1 1 1 0 SprT-like family DUF1272 PF06906.6 gi|305663786|ref|YP_003860074.1| - 0.14 12.0 5.0 2.3 8.1 3.4 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-RING_4 PF14570.1 gi|305663786|ref|YP_003860074.1| - 0.15 11.6 10.4 0.49 10.0 7.2 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-ISL3 PF14690.1 gi|305663786|ref|YP_003860074.1| - 0.15 12.1 5.4 9.2 6.3 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1595 PF12760.2 gi|305663786|ref|YP_003860074.1| - 0.2 11.5 7.2 1 9.2 1.4 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-B_box PF00643.19 gi|305663786|ref|YP_003860074.1| - 0.21 11.5 8.6 1.2 9.1 3.7 2.9 2 1 0 2 2 2 0 B-box zinc finger DZR PF12773.2 gi|305663786|ref|YP_003860074.1| - 0.21 11.4 6.4 1 9.2 4.6 2.0 1 1 1 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|305663786|ref|YP_003860074.1| - 0.23 10.6 6.5 3.1 7.1 0.0 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|305663786|ref|YP_003860074.1| - 0.3 10.6 8.0 6.2 6.4 0.0 3.4 3 1 0 3 3 3 0 InsA N-terminal domain zf-UBR PF02207.15 gi|305663786|ref|YP_003860074.1| - 0.32 10.7 5.7 0.58 9.9 4.0 1.5 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) Rep_fac-A_C PF08646.5 gi|305663786|ref|YP_003860074.1| - 0.39 10.4 7.5 0.27 10.9 3.9 1.7 1 1 1 2 2 2 0 Replication factor-A C terminal domain zinc_ribbon_5 PF13719.1 gi|305663786|ref|YP_003860074.1| - 0.4 10.3 10.2 2.2 7.9 4.1 2.9 2 1 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|305663786|ref|YP_003860074.1| - 0.54 10.0 3.9 3.9 7.2 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Cys_rich_CPXG PF14255.1 gi|305663786|ref|YP_003860074.1| - 0.73 9.7 4.9 2.5 7.9 0.0 2.9 3 0 0 3 3 3 0 Cysteine-rich CPXCG CpXC PF14353.1 gi|305663786|ref|YP_003860074.1| - 0.78 9.7 7.7 2.6 8.0 2.1 2.5 1 1 1 2 2 2 0 CpXC protein FANCL_C PF11793.3 gi|305663786|ref|YP_003860074.1| - 0.89 9.5 9.2 1.1e+02 2.8 6.4 2.3 1 1 0 1 1 1 0 FANCL C-terminal domain zf-C4_Topoisom PF01396.14 gi|305663786|ref|YP_003860074.1| - 0.96 9.0 4.6 20 4.8 0.0 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger RNHCP PF12647.2 gi|305663786|ref|YP_003860074.1| - 1.2 9.0 4.7 0.41 10.5 0.5 1.9 1 1 1 2 2 2 0 RNHCP domain zf-LITAF-like PF10601.4 gi|305663786|ref|YP_003860074.1| - 1.4 8.7 8.9 6.7 6.6 0.2 3.3 3 1 1 4 4 3 0 LITAF-like zinc ribbon domain C1_2 PF03107.11 gi|305663786|ref|YP_003860074.1| - 1.7 8.8 9.1 14 5.9 6.3 2.4 1 1 0 1 1 1 0 C1 domain zf-C3HC4_2 PF13923.1 gi|305663786|ref|YP_003860074.1| - 1.7 8.7 9.3 46 4.1 6.4 2.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.7 gi|305663786|ref|YP_003860074.1| - 2.6 7.4 8.8 2 7.7 3.5 2.5 2 1 1 3 3 3 0 TFIIB zinc-binding ADK_lid PF05191.9 gi|305663786|ref|YP_003860074.1| - 3.1 7.5 7.4 0.56 9.9 1.8 2.1 2 1 0 2 2 2 0 Adenylate kinase, active site lid DUF2072 PF09845.4 gi|305663786|ref|YP_003860074.1| - 4.1 7.3 5.4 1.2 9.0 1.5 1.6 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) PhnA_Zn_Ribbon PF08274.7 gi|305663786|ref|YP_003860074.1| - 4.4 7.1 12.6 6.7 6.5 5.7 2.4 1 1 1 2 2 2 0 PhnA Zinc-Ribbon FYVE PF01363.16 gi|305663786|ref|YP_003860074.1| - 4.7 7.1 7.8 38 4.2 5.4 2.3 1 1 0 1 1 1 0 FYVE zinc finger C1_4 PF07975.7 gi|305663786|ref|YP_003860074.1| - 5 7.1 9.1 64 3.6 6.4 2.3 1 1 0 1 1 1 0 TFIIH C1-like domain zf-C2HC_2 PF13913.1 gi|305663786|ref|YP_003860074.1| - 6.5 6.5 8.7 31 4.3 0.1 3.2 3 0 0 3 3 3 0 zinc-finger of a C2HC-type Lar_restr_allev PF14354.1 gi|305663786|ref|YP_003860074.1| - 7.1 7.0 8.1 26 5.2 1.4 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-RING_5 PF14634.1 gi|305663786|ref|YP_003860074.1| - 7.2 6.4 11.2 1.3e+03 -0.9 7.8 2.9 1 1 0 1 1 1 0 zinc-RING finger domain PyrI_C PF02748.10 gi|305663786|ref|YP_003860074.1| - 7.3 6.1 8.4 0.75 9.2 1.6 2.2 1 1 0 2 2 2 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain TFIIS_C PF01096.13 gi|305663786|ref|YP_003860074.1| - 7.6 6.2 8.3 7 6.3 0.7 2.9 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-AN1 PF01428.11 gi|305663786|ref|YP_003860074.1| - 7.6 6.4 7.8 63 3.5 2.7 2.9 1 1 2 3 3 3 0 AN1-like Zinc finger DUF4428 PF14471.1 gi|305663786|ref|YP_003860074.1| - 8.2 6.2 7.9 20 5.0 3.8 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4428) Integrase_Zn PF02022.14 gi|305663786|ref|YP_003860074.1| - 8.6 5.8 6.6 1.4 8.4 0.1 2.5 3 0 0 3 3 2 0 Integrase Zinc binding domain C1_1 PF00130.17 gi|305663786|ref|YP_003860074.1| - 8.7 6.1 8.0 3 7.6 2.2 2.1 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|305663788|ref|YP_003860076.1| - 0.13 12.6 0.1 0.22 11.9 0.1 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger Hydrolase_3 PF08282.7 gi|305663789|ref|YP_003860077.1| - 1.8e-10 40.8 0.0 1.2e-07 31.6 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|305663789|ref|YP_003860077.1| - 1.4e-09 38.4 0.0 2.3e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|305663789|ref|YP_003860077.1| - 8.7e-05 22.8 0.0 0.00025 21.3 0.0 1.7 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|305663789|ref|YP_003860077.1| - 0.0002 20.6 0.0 0.093 11.8 0.0 2.1 2 0 0 2 2 2 2 Putative Phosphatase Hydrolase PF00702.21 gi|305663789|ref|YP_003860077.1| - 0.00089 19.7 0.0 0.93 9.8 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.11 gi|305663789|ref|YP_003860077.1| - 0.054 12.4 0.0 5 5.9 0.0 2.2 2 0 0 2 2 2 0 Trehalose-phosphatase S6PP PF05116.8 gi|305663789|ref|YP_003860077.1| - 0.096 11.9 0.0 0.32 10.2 0.0 1.8 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase Spermine_synth PF01564.12 gi|305663791|ref|YP_003860079.1| - 3.5e-65 219.3 2.2 4.3e-65 219.0 1.5 1.0 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|305663791|ref|YP_003860079.1| - 1.4e-08 34.7 0.0 2.1e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305663791|ref|YP_003860079.1| - 1.5e-07 31.1 0.2 3.4e-07 29.9 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305663791|ref|YP_003860079.1| - 3.4e-05 24.2 0.0 7e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|305663791|ref|YP_003860079.1| - 0.00031 20.3 0.0 0.00055 19.6 0.0 1.4 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_18 PF12847.2 gi|305663791|ref|YP_003860079.1| - 0.0016 18.9 0.0 0.0025 18.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|305663791|ref|YP_003860079.1| - 0.013 15.8 0.0 0.021 15.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|305663791|ref|YP_003860079.1| - 0.017 14.5 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain AAA_31 PF13614.1 gi|305663791|ref|YP_003860079.1| - 0.019 14.9 0.1 0.051 13.5 0.0 1.7 1 1 1 2 2 2 0 AAA domain Methyltransf_24 PF13578.1 gi|305663791|ref|YP_003860079.1| - 0.021 15.6 0.0 0.039 14.7 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TrkA_N PF02254.13 gi|305663791|ref|YP_003860079.1| - 0.021 14.7 0.3 2 8.4 0.0 2.4 1 1 1 2 2 2 0 TrkA-N domain DUF3546 PF12066.3 gi|305663791|ref|YP_003860079.1| - 0.028 14.4 0.0 0.065 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3546) OMPdecase PF00215.19 gi|305663793|ref|YP_003860081.1| - 3.6e-23 82.1 0.0 4.4e-23 81.8 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.22 gi|305663794|ref|YP_003860082.1| - 5.3e-15 55.2 0.1 1.1e-14 54.2 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain IlvC PF01450.14 gi|305663794|ref|YP_003860082.1| - 0.027 14.3 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain UPRTase PF14681.1 gi|305663794|ref|YP_003860082.1| - 0.14 11.3 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase Phage_XkdX PF09693.5 gi|305663794|ref|YP_003860082.1| - 3.8 7.1 5.6 22 4.6 1.2 2.7 3 0 0 3 3 3 0 Phage uncharacterised protein (Phage_XkdX) OTCace_N PF02729.16 gi|305663795|ref|YP_003860083.1| - 6.3e-42 142.6 0.0 9.2e-42 142.0 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|305663795|ref|YP_003860083.1| - 7.7e-32 110.3 0.0 2.5e-31 108.6 0.0 1.8 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|305663796|ref|YP_003860084.1| - 2.4e-35 120.4 5.2 3.3e-35 119.9 3.6 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|305663796|ref|YP_003860084.1| - 2.8e-20 71.4 0.4 4.7e-20 70.7 0.3 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DHODB_Fe-S_bind PF10418.4 gi|305663797|ref|YP_003860085.1| - 1.7e-11 43.3 3.1 3.3e-11 42.4 2.1 1.5 1 0 0 1 1 1 1 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B NAD_binding_1 PF00175.16 gi|305663797|ref|YP_003860085.1| - 5.5e-10 39.7 0.0 7.9e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase NAD-binding domain NAD_binding_6 PF08030.7 gi|305663797|ref|YP_003860085.1| - 0.0053 16.6 0.1 0.0081 16.0 0.1 1.3 1 0 0 1 1 1 1 Ferric reductase NAD binding domain Amidohydro_1 PF01979.15 gi|305663798|ref|YP_003860086.1| - 2e-17 63.8 0.1 2.8e-16 60.0 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|305663798|ref|YP_003860086.1| - 2.2e-15 57.4 0.0 9.3e-15 55.3 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|305663798|ref|YP_003860086.1| - 1.3e-08 34.5 0.2 2.8e-08 33.4 0.1 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|305663798|ref|YP_003860086.1| - 0.00058 19.1 0.0 0.14 11.3 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family PAGK PF15284.1 gi|305663798|ref|YP_003860086.1| - 0.076 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Phage-encoded virulence factor DHO_dh PF01180.16 gi|305663799|ref|YP_003860087.1| - 5.3e-57 193.0 0.4 6e-57 192.8 0.3 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.12 gi|305663799|ref|YP_003860087.1| - 3.7e-09 35.8 0.0 1.6e-07 30.5 0.0 2.0 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|305663799|ref|YP_003860087.1| - 2.3e-05 23.7 1.0 0.0083 15.3 0.1 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|305663799|ref|YP_003860087.1| - 5.5e-05 22.5 1.2 0.00025 20.3 0.0 2.4 3 0 0 3 3 3 1 PcrB family His_biosynth PF00977.16 gi|305663799|ref|YP_003860087.1| - 8.6e-05 21.9 1.2 0.00044 19.5 0.0 2.5 3 0 0 3 3 3 1 Histidine biosynthesis protein NanE PF04131.9 gi|305663799|ref|YP_003860087.1| - 0.00048 19.1 0.5 0.0042 16.0 0.0 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DUF561 PF04481.7 gi|305663799|ref|YP_003860087.1| - 0.01 14.8 3.9 0.7 8.7 0.9 2.6 2 1 0 3 3 3 0 Protein of unknown function (DUF561) IMPDH PF00478.20 gi|305663799|ref|YP_003860087.1| - 0.026 13.4 1.5 1.2 7.9 0.0 2.8 3 1 1 4 4 4 0 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|305663799|ref|YP_003860087.1| - 0.11 11.5 0.6 2.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator Radical_SAM PF04055.16 gi|305663800|ref|YP_003860088.1| - 3.7e-17 62.9 0.2 3.8e-16 59.7 0.1 2.1 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305663800|ref|YP_003860088.1| - 2.5e-10 40.5 0.2 2.5e-10 40.5 0.1 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305663800|ref|YP_003860088.1| - 2.2e-07 30.9 0.1 2.2e-07 30.9 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S single cluster domain zf-AD PF07776.10 gi|305663800|ref|YP_003860088.1| - 0.66 10.0 3.7 1.8 8.6 2.6 1.8 1 0 0 1 1 1 0 Zinc-finger associated domain (zf-AD) Rpr2 PF04032.11 gi|305663801|ref|YP_003860089.1| - 1.6e-19 69.5 0.0 1.9e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain Nudix_N_2 PF14803.1 gi|305663801|ref|YP_003860089.1| - 0.038 13.6 1.4 3.7 7.3 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF2180 PF09947.4 gi|305663801|ref|YP_003860089.1| - 0.083 12.6 0.5 11 5.8 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-like PF04071.7 gi|305663801|ref|YP_003860089.1| - 0.13 11.9 1.2 6.7 6.4 0.1 2.1 1 1 1 2 2 2 0 Cysteine-rich small domain CRS1_YhbY PF01985.16 gi|305663802|ref|YP_003860090.1| - 1.6e-13 50.4 1.4 2.2e-13 50.0 1.0 1.1 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain Ribosomal_S19e PF01090.14 gi|305663803|ref|YP_003860091.1| - 2.3e-52 176.1 0.0 2.7e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.8 gi|305663803|ref|YP_003860091.1| - 0.077 12.6 0.1 0.29 10.7 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB C-terminus dsDNA_bind PF01984.15 gi|305663804|ref|YP_003860092.1| - 1.7e-26 92.3 9.5 2.1e-26 92.0 6.6 1.2 1 0 0 1 1 1 1 Double-stranded DNA-binding domain Vasculin PF15337.1 gi|305663804|ref|YP_003860092.1| - 0.015 15.7 2.4 0.072 13.5 0.5 2.1 2 0 0 2 2 2 0 Vascular protein family Vasculin-like 1 Staphylokinase PF02821.11 gi|305663804|ref|YP_003860092.1| - 0.022 14.5 0.0 0.056 13.2 0.0 1.7 1 1 0 1 1 1 0 Staphylokinase/Streptokinase family SF3b1 PF08920.5 gi|305663804|ref|YP_003860092.1| - 0.063 13.3 0.3 0.11 12.5 0.2 1.6 1 1 0 1 1 1 0 Splicing factor 3B subunit 1 DUF1266 PF06889.6 gi|305663804|ref|YP_003860092.1| - 0.36 10.5 3.1 0.99 9.1 2.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1266) Ribosomal_L39 PF00832.15 gi|305663805|ref|YP_003860093.1| - 1.1e-15 56.7 8.4 1.5e-15 56.3 5.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein REV PF00424.13 gi|305663805|ref|YP_003860093.1| - 0.35 10.7 3.7 0.38 10.6 2.6 1.0 1 0 0 1 1 1 0 REV protein (anti-repression trans-activator protein) Ribosomal_L31e PF01198.14 gi|305663806|ref|YP_003860094.1| - 4.2e-13 48.7 0.0 5.3e-13 48.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e DUF2487 PF10673.4 gi|305663806|ref|YP_003860094.1| - 0.01 15.6 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) eIF-6 PF01912.13 gi|305663807|ref|YP_003860095.1| - 1.5e-63 213.4 2.3 3.7e-63 212.2 1.7 1.5 1 1 0 1 1 1 1 eIF-6 family ODR4-like PF14778.1 gi|305663807|ref|YP_003860095.1| - 0.11 11.1 0.0 0.15 10.7 0.0 1.2 1 0 0 1 1 1 0 Olfactory receptor 4-like Ribosomal_L18ae PF01775.12 gi|305663808|ref|YP_003860096.1| - 2.5e-10 40.2 0.1 3.4e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain Prefoldin PF02996.12 gi|305663809|ref|YP_003860097.1| - 5.3e-10 38.9 3.3 5.3e-10 38.9 2.3 1.7 1 1 1 2 2 2 1 Prefoldin subunit AKNA PF12443.3 gi|305663809|ref|YP_003860097.1| - 0.0013 18.7 5.8 0.21 11.6 0.9 2.2 2 0 0 2 2 2 2 AT-hook-containing transcription factor Spc42p PF11544.3 gi|305663809|ref|YP_003860097.1| - 0.0031 17.4 4.6 0.0084 16.0 3.2 1.8 1 0 0 1 1 1 1 Spindle pole body component Spc42p DASH_Duo1 PF08651.5 gi|305663809|ref|YP_003860097.1| - 0.029 13.9 0.3 0.029 13.9 0.2 2.3 2 1 0 2 2 2 0 DASH complex subunit Duo1 DsrC PF04358.8 gi|305663809|ref|YP_003860097.1| - 0.059 13.6 0.2 0.059 13.6 0.1 1.5 2 1 0 2 2 1 0 DsrC like protein DUF948 PF06103.6 gi|305663809|ref|YP_003860097.1| - 0.067 13.0 0.8 0.34 10.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Prefoldin_2 PF01920.15 gi|305663809|ref|YP_003860097.1| - 0.074 12.8 11.9 1 9.1 3.2 2.3 1 1 1 2 2 2 0 Prefoldin subunit Mating_N PF12731.2 gi|305663809|ref|YP_003860097.1| - 0.077 12.8 1.3 0.7 9.8 0.1 2.3 2 1 0 2 2 2 0 Mating-type protein beta 1 Streptin-Immun PF11083.3 gi|305663809|ref|YP_003860097.1| - 0.19 11.7 8.1 0.04 13.9 2.3 2.3 1 1 0 2 2 2 0 Lantibiotic streptin immunity protein DUF3810 PF12725.2 gi|305663809|ref|YP_003860097.1| - 0.22 10.3 2.6 1 8.1 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3810) DegQ PF08181.6 gi|305663809|ref|YP_003860097.1| - 0.45 10.2 6.3 0.53 10.0 0.2 2.7 3 0 0 3 3 3 0 DegQ (SacQ) family Laminin_II PF06009.7 gi|305663809|ref|YP_003860097.1| - 0.45 10.2 5.4 4.8 6.9 0.6 2.2 2 0 0 2 2 2 0 Laminin Domain II Kinetocho_Slk19 PF12709.2 gi|305663809|ref|YP_003860097.1| - 0.55 10.3 9.2 0.25 11.4 2.3 2.4 2 1 0 2 2 2 0 Central kinetochore-associated AF0941-like PF14591.1 gi|305663809|ref|YP_003860097.1| - 0.62 10.1 9.0 0.2 11.7 3.6 2.1 1 1 1 2 2 2 0 AF0941-like IncA PF04156.9 gi|305663809|ref|YP_003860097.1| - 0.63 9.6 12.6 0.043 13.4 1.6 2.1 2 0 0 2 2 2 0 IncA protein Homeobox PF00046.24 gi|305663809|ref|YP_003860097.1| - 0.75 9.4 3.5 2.2 7.9 0.1 2.4 2 0 0 2 2 2 0 Homeobox domain DNA_primase_lrg PF04104.9 gi|305663809|ref|YP_003860097.1| - 0.89 8.7 3.5 0.55 9.4 1.0 1.6 1 1 1 2 2 2 0 Eukaryotic and archaeal DNA primase, large subunit AAA_23 PF13476.1 gi|305663809|ref|YP_003860097.1| - 0.91 9.8 8.1 1.6 9.0 5.6 1.4 1 1 0 1 1 1 0 AAA domain DUF1128 PF06569.6 gi|305663809|ref|YP_003860097.1| - 1.9 8.2 6.6 4.1 7.2 0.6 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1128) DUF972 PF06156.8 gi|305663809|ref|YP_003860097.1| - 1.9 8.8 7.4 10 6.5 1.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Spc24 PF08286.6 gi|305663809|ref|YP_003860097.1| - 4.3 7.0 9.6 1.5 8.5 2.6 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 SRP54 PF00448.17 gi|305663810|ref|YP_003860098.1| - 5.3e-70 234.8 2.0 8e-70 234.2 1.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|305663810|ref|YP_003860098.1| - 1.7e-10 40.8 0.4 3.8e-10 39.7 0.3 1.6 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain cobW PF02492.14 gi|305663810|ref|YP_003860098.1| - 1.3e-06 27.9 0.7 2.1e-06 27.2 0.5 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|305663810|ref|YP_003860098.1| - 4.2e-05 23.2 0.3 0.00011 21.9 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|305663810|ref|YP_003860098.1| - 0.00011 21.0 3.4 0.00062 18.6 1.0 2.5 2 1 0 2 2 2 1 ArgK protein CbiA PF01656.18 gi|305663810|ref|YP_003860098.1| - 0.00024 20.5 9.8 0.00048 19.5 4.3 2.7 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.1 gi|305663810|ref|YP_003860098.1| - 0.00084 18.9 1.3 0.0012 18.4 0.4 1.8 2 1 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|305663810|ref|YP_003860098.1| - 0.0028 16.7 0.2 0.0063 15.6 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|305663810|ref|YP_003860098.1| - 0.0033 17.1 3.3 0.048 13.3 0.3 2.4 1 1 1 2 2 2 1 NTPase TPP_enzyme_M PF00205.17 gi|305663810|ref|YP_003860098.1| - 0.0036 17.0 0.0 0.0098 15.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain ArsA_ATPase PF02374.10 gi|305663810|ref|YP_003860098.1| - 0.0039 16.2 2.1 0.095 11.7 0.4 2.5 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_22 PF13401.1 gi|305663810|ref|YP_003860098.1| - 0.0047 17.0 0.1 0.021 14.9 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|305663810|ref|YP_003860098.1| - 0.0083 16.0 0.0 0.028 14.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663810|ref|YP_003860098.1| - 0.0096 16.1 1.6 0.04 14.1 1.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|305663810|ref|YP_003860098.1| - 0.014 15.1 0.1 0.036 13.8 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_31 PF13614.1 gi|305663810|ref|YP_003860098.1| - 0.017 15.0 1.9 1.3 8.8 0.1 3.3 3 1 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.18 gi|305663810|ref|YP_003860098.1| - 0.024 14.5 0.1 0.061 13.2 0.1 1.8 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|305663810|ref|YP_003860098.1| - 0.036 14.0 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.12 gi|305663810|ref|YP_003860098.1| - 0.042 13.2 0.1 0.25 10.7 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase LpxK PF02606.9 gi|305663810|ref|YP_003860098.1| - 0.042 12.8 0.1 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase APS_kinase PF01583.15 gi|305663810|ref|YP_003860098.1| - 0.043 13.4 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|305663810|ref|YP_003860098.1| - 0.052 13.2 1.7 0.44 10.2 0.1 2.2 1 1 1 2 2 2 0 Archaeal ATPase Arf PF00025.16 gi|305663810|ref|YP_003860098.1| - 0.055 12.6 0.2 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 ADP-ribosylation factor family AGT PF11440.3 gi|305663810|ref|YP_003860098.1| - 0.064 12.1 1.1 0.077 11.8 0.1 1.6 2 0 0 2 2 2 0 DNA alpha-glucosyltransferase AAA_10 PF12846.2 gi|305663810|ref|YP_003860098.1| - 0.082 12.3 0.1 0.082 12.3 0.1 2.3 3 0 0 3 3 3 0 AAA-like domain ResIII PF04851.10 gi|305663810|ref|YP_003860098.1| - 0.1 12.4 0.4 0.32 10.8 0.0 1.9 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit dTMP_synthase PF02593.9 gi|305663810|ref|YP_003860098.1| - 0.1 11.8 0.4 0.29 10.4 0.0 1.8 3 0 0 3 3 3 0 Thymidylate synthase Smoothelin PF12510.3 gi|305663810|ref|YP_003860098.1| - 0.11 12.3 0.0 0.4 10.5 0.0 1.9 2 0 0 2 2 1 0 Smoothelin cytoskeleton protein AAA_24 PF13479.1 gi|305663810|ref|YP_003860098.1| - 0.57 9.7 5.8 0.14 11.7 0.7 2.5 3 1 0 3 3 1 0 AAA domain NDUF_B12 PF08122.7 gi|305663811|ref|YP_003860099.1| - 0.11 12.1 0.4 0.16 11.7 0.3 1.2 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase B12 subunit family Spt5-NGN PF03439.8 gi|305663812|ref|YP_003860100.1| - 6.1e-20 70.7 0.0 1.1e-19 69.9 0.0 1.4 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|305663812|ref|YP_003860100.1| - 5.2e-06 25.9 0.1 9.1e-06 25.1 0.1 1.4 1 0 0 1 1 1 1 KOW motif Ribosomal_L11_N PF03946.9 gi|305663813|ref|YP_003860101.1| - 7e-21 73.4 0.6 1.2e-20 72.6 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.14 gi|305663813|ref|YP_003860101.1| - 2.5e-19 69.1 0.9 5.2e-19 68.1 0.6 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Cpl-7 PF08230.6 gi|305663813|ref|YP_003860101.1| - 0.066 12.9 0.1 1.5 8.6 0.0 2.3 2 0 0 2 2 2 0 Cpl-7 lysozyme C-terminal domain ScdA_N PF04405.9 gi|305663813|ref|YP_003860101.1| - 0.083 12.2 0.0 0.72 9.2 0.0 2.3 2 0 0 2 2 2 0 Domain of Unknown function (DUF542) Ribosomal_L1 PF00687.16 gi|305663814|ref|YP_003860102.1| - 3e-35 121.5 0.0 3.5e-35 121.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|305663815|ref|YP_003860103.1| - 2e-16 59.7 0.4 4.1e-16 58.7 0.3 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|305663815|ref|YP_003860103.1| - 0.00042 20.6 3.9 0.0011 19.2 2.7 1.8 1 0 0 1 1 1 1 60s Acidic ribosomal protein SIS PF01380.17 gi|305663816|ref|YP_003860104.1| - 4.9e-21 74.6 0.1 8.6e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.1 gi|305663816|ref|YP_003860104.1| - 3e-15 56.1 1.8 1.1e-09 38.1 0.8 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.11 gi|305663816|ref|YP_003860104.1| - 0.0017 17.3 1.4 0.35 9.7 0.0 2.2 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase ApbA PF02558.11 gi|305663816|ref|YP_003860104.1| - 0.033 13.6 0.2 0.08 12.3 0.1 1.7 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|305663816|ref|YP_003860104.1| - 0.12 10.8 0.1 0.18 10.2 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|305663816|ref|YP_003860104.1| - 0.14 11.2 1.8 0.78 8.8 0.1 2.1 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PIN PF01850.16 gi|305663817|ref|YP_003860105.1| - 6.2e-15 55.5 1.5 7.2e-15 55.3 1.0 1.1 1 0 0 1 1 1 1 PIN domain MA3 PF02847.12 gi|305663817|ref|YP_003860105.1| - 0.041 13.5 0.1 0.97 9.1 0.0 2.1 2 0 0 2 2 2 0 MA3 domain RHH_1 PF01402.16 gi|305663818|ref|YP_003860106.1| - 0.00026 20.7 4.5 0.0021 17.8 0.9 3.2 2 2 0 2 2 2 1 Ribbon-helix-helix protein, copG family CcdA PF07362.7 gi|305663818|ref|YP_003860106.1| - 0.014 15.2 0.7 0.017 14.9 0.5 1.2 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA DUF217 PF02697.9 gi|305663818|ref|YP_003860106.1| - 0.17 12.1 3.7 0.31 11.3 2.6 1.5 1 1 0 1 1 1 0 Uncharacterized ACR, COG1753 GlutR_dimer PF00745.15 gi|305663818|ref|YP_003860106.1| - 0.4 10.6 3.4 0.51 10.3 2.4 1.3 1 0 0 1 1 1 0 Glutamyl-tRNAGlu reductase, dimerisation domain CorA PF01544.13 gi|305663819|ref|YP_003860107.1| - 0.13 11.2 1.1 0.84 8.6 0.2 1.9 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF2666 PF10869.3 gi|305663819|ref|YP_003860107.1| - 0.17 11.9 2.5 0.17 11.9 0.4 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2666) DUF1664 PF07889.7 gi|305663819|ref|YP_003860107.1| - 0.27 11.0 1.2 1.7 8.4 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) HEPN PF05168.9 gi|305663820|ref|YP_003860108.1| - 9.8e-06 25.4 0.0 1.2e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 HEPN domain Neurensin PF14927.1 gi|305663821|ref|YP_003860109.1| - 0.017 14.5 0.2 0.18 11.2 0.0 2.1 2 0 0 2 2 2 0 Neurensin Arch_ATPase PF01637.13 gi|305663822|ref|YP_003860110.1| - 2.2e-53 181.3 0.0 3.2e-53 180.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663822|ref|YP_003860110.1| - 1.7e-06 28.1 0.0 9.8e-06 25.6 0.0 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|305663822|ref|YP_003860110.1| - 0.0022 18.8 0.8 0.036 14.8 0.6 2.6 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|305663822|ref|YP_003860110.1| - 0.0041 16.0 0.0 0.0073 15.2 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain AAA_14 PF13173.1 gi|305663822|ref|YP_003860110.1| - 0.005 16.7 0.1 0.012 15.4 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663822|ref|YP_003860110.1| - 0.016 15.4 0.0 0.038 14.2 0.0 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|305663822|ref|YP_003860110.1| - 0.02 15.1 0.0 0.066 13.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305663822|ref|YP_003860110.1| - 0.022 14.4 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.1 gi|305663822|ref|YP_003860110.1| - 0.029 14.5 0.0 0.083 13.0 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|305663822|ref|YP_003860110.1| - 0.038 13.5 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663822|ref|YP_003860110.1| - 0.051 13.1 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|305663822|ref|YP_003860110.1| - 0.056 13.6 0.0 0.22 11.6 0.0 1.9 2 0 0 2 2 2 0 RNA helicase DAP3 PF10236.4 gi|305663822|ref|YP_003860110.1| - 0.079 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_25 PF13481.1 gi|305663822|ref|YP_003860110.1| - 0.085 12.2 0.0 0.16 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|305663822|ref|YP_003860110.1| - 0.12 11.5 0.0 3.3 6.8 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Bac_DnaA PF00308.13 gi|305663822|ref|YP_003860110.1| - 0.17 11.5 0.0 0.34 10.5 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|305663823|ref|YP_003860111.1| - 8.8e-57 192.4 0.4 1.4e-56 191.8 0.3 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305663823|ref|YP_003860111.1| - 9.8e-06 25.6 0.0 0.00015 21.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|305663823|ref|YP_003860111.1| - 1.2e-05 24.3 0.0 2.2e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|305663823|ref|YP_003860111.1| - 2.2e-05 24.1 0.0 0.00038 20.1 0.0 2.2 1 1 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|305663823|ref|YP_003860111.1| - 0.00063 19.9 0.1 0.0018 18.4 0.0 1.8 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|305663823|ref|YP_003860111.1| - 0.00064 19.8 0.0 0.0023 18.0 0.0 2.0 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|305663823|ref|YP_003860111.1| - 0.00067 19.4 0.0 0.0025 17.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|305663823|ref|YP_003860111.1| - 0.0029 17.2 0.0 0.0065 16.1 0.0 1.5 1 1 0 1 1 1 1 Bacterial dnaA protein AAA_23 PF13476.1 gi|305663823|ref|YP_003860111.1| - 0.0038 17.5 0.0 0.0064 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|305663823|ref|YP_003860111.1| - 0.004 17.0 0.0 0.0096 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_PrkA PF08298.6 gi|305663823|ref|YP_003860111.1| - 0.0062 15.2 0.0 0.015 14.0 0.0 1.6 2 0 0 2 2 2 1 PrkA AAA domain AAA_30 PF13604.1 gi|305663823|ref|YP_003860111.1| - 0.011 15.3 0.0 0.018 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|305663823|ref|YP_003860111.1| - 0.019 15.1 0.0 0.049 13.8 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_28 PF13521.1 gi|305663823|ref|YP_003860111.1| - 0.02 14.8 0.0 0.14 12.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|305663823|ref|YP_003860111.1| - 0.021 13.9 0.0 0.068 12.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin KAP_NTPase PF07693.9 gi|305663823|ref|YP_003860111.1| - 0.029 13.3 0.0 0.032 13.2 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain AAA_17 PF13207.1 gi|305663823|ref|YP_003860111.1| - 0.032 15.0 1.7 0.19 12.5 1.2 2.5 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|305663823|ref|YP_003860111.1| - 0.037 12.7 0.0 0.038 12.6 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit AAA_24 PF13479.1 gi|305663823|ref|YP_003860111.1| - 0.045 13.3 0.0 0.081 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|305663823|ref|YP_003860111.1| - 0.049 12.5 0.0 0.22 10.4 0.0 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 ABC_tran PF00005.22 gi|305663823|ref|YP_003860111.1| - 0.054 13.7 0.0 0.098 12.9 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_21 PF13304.1 gi|305663823|ref|YP_003860111.1| - 0.072 13.0 0.1 0.38 10.6 0.0 1.9 1 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|305663823|ref|YP_003860111.1| - 0.081 12.3 0.0 0.18 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|305663823|ref|YP_003860111.1| - 0.11 11.9 0.0 0.27 10.6 0.0 1.6 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SMC_N PF02463.14 gi|305663823|ref|YP_003860111.1| - 0.15 11.2 0.0 0.84 8.8 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Sec66 PF09802.4 gi|305663824|ref|YP_003860112.1| - 0.018 14.4 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 Preprotein translocase subunit Sec66 CTK3_C PF12350.3 gi|305663825|ref|YP_003860113.1| - 0.0036 17.3 1.4 0.59 10.2 0.2 2.5 1 1 0 1 1 1 1 CTD kinase subunit gamma CTK3 C-terminus DUF972 PF06156.8 gi|305663825|ref|YP_003860113.1| - 0.0046 17.2 3.0 0.62 10.4 0.1 2.8 1 1 2 3 3 3 1 Protein of unknown function (DUF972) Phlebovirus_NSM PF07246.6 gi|305663825|ref|YP_003860113.1| - 0.0097 15.0 1.1 0.022 13.9 0.7 1.6 1 1 0 1 1 1 1 Phlebovirus nonstructural protein NS-M IncA PF04156.9 gi|305663825|ref|YP_003860113.1| - 0.01 15.4 4.8 0.013 15.1 3.3 1.3 1 1 0 1 1 1 0 IncA protein Myb_DNA-bind_4 PF13837.1 gi|305663825|ref|YP_003860113.1| - 0.014 15.5 0.1 0.018 15.1 0.1 1.4 1 0 0 1 1 1 0 Myb/SANT-like DNA-binding domain CCDC155 PF14662.1 gi|305663825|ref|YP_003860113.1| - 0.014 14.9 3.1 0.018 14.6 2.1 1.1 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 COG2 PF06148.6 gi|305663825|ref|YP_003860113.1| - 0.015 15.1 0.2 0.63 9.9 0.0 2.1 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2130 PF09903.4 gi|305663825|ref|YP_003860113.1| - 0.016 13.9 0.2 0.018 13.8 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2130) Leu_zip PF15294.1 gi|305663825|ref|YP_003860113.1| - 0.016 14.3 0.2 0.022 13.8 0.2 1.2 1 0 0 1 1 1 0 Leucine zipper Phage_lysis PF03245.8 gi|305663825|ref|YP_003860113.1| - 0.022 14.7 0.3 0.67 9.9 0.0 2.4 1 1 1 2 2 2 0 Bacteriophage Rz lysis protein DUF4618 PF15397.1 gi|305663825|ref|YP_003860113.1| - 0.027 13.7 0.3 0.03 13.6 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Vac_Fusion PF02346.11 gi|305663825|ref|YP_003860113.1| - 0.029 13.7 3.6 0.059 12.7 0.8 2.4 1 1 1 2 2 2 0 Chordopoxvirus fusion protein HAP1_N PF04849.8 gi|305663825|ref|YP_003860113.1| - 0.03 13.2 1.4 0.12 11.3 0.9 2.0 1 1 0 1 1 1 0 HAP1 N-terminal conserved region RmuC PF02646.11 gi|305663825|ref|YP_003860113.1| - 0.036 12.9 0.6 0.066 12.0 0.4 1.4 1 1 0 1 1 1 0 RmuC family DUF724 PF05266.9 gi|305663825|ref|YP_003860113.1| - 0.043 13.4 3.5 0.038 13.6 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF724) Atg14 PF10186.4 gi|305663825|ref|YP_003860113.1| - 0.043 12.7 2.3 0.08 11.8 1.6 1.5 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1910 PF08928.5 gi|305663825|ref|YP_003860113.1| - 0.047 13.7 1.8 0.27 11.2 0.8 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF1910) WEMBL PF05701.6 gi|305663825|ref|YP_003860113.1| - 0.05 12.0 1.0 0.07 11.5 0.7 1.2 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|305663825|ref|YP_003860113.1| - 0.051 12.2 0.5 0.067 11.8 0.4 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein FUSC PF04632.7 gi|305663825|ref|YP_003860113.1| - 0.051 12.0 0.7 0.056 11.8 0.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family Streptin-Immun PF11083.3 gi|305663825|ref|YP_003860113.1| - 0.051 13.5 0.6 0.73 9.8 0.1 2.2 1 1 1 2 2 2 0 Lantibiotic streptin immunity protein Apolipoprotein PF01442.13 gi|305663825|ref|YP_003860113.1| - 0.079 12.4 2.5 0.12 11.8 1.7 1.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain NAP PF00956.13 gi|305663825|ref|YP_003860113.1| - 0.081 12.0 0.7 0.098 11.7 0.5 1.2 1 0 0 1 1 1 0 Nucleosome assembly protein (NAP) AATF-Che1 PF13339.1 gi|305663825|ref|YP_003860113.1| - 0.081 13.0 0.6 1.5 9.0 0.1 2.2 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor DUF2746 PF10874.3 gi|305663825|ref|YP_003860113.1| - 0.087 13.0 10.4 0.45 10.7 0.9 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2746) Phage_GPO PF05929.6 gi|305663825|ref|YP_003860113.1| - 0.089 12.0 0.1 0.1 11.8 0.0 1.1 1 0 0 1 1 1 0 Phage capsid scaffolding protein (GPO) serine peptidase SpoOE-like PF09388.5 gi|305663825|ref|YP_003860113.1| - 0.092 12.2 4.2 1.5 8.4 0.1 2.9 3 0 0 3 3 3 0 Spo0E like sporulation regulatory protein DUF3201 PF11447.3 gi|305663825|ref|YP_003860113.1| - 0.094 12.1 3.4 2.9 7.3 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3201) ACCA PF03255.9 gi|305663825|ref|YP_003860113.1| - 0.095 12.2 0.9 0.13 11.7 0.6 1.3 1 0 0 1 1 1 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF342 PF03961.8 gi|305663825|ref|YP_003860113.1| - 0.099 11.0 0.9 0.1 10.9 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) TPR_MLP1_2 PF07926.7 gi|305663825|ref|YP_003860113.1| - 0.1 12.3 0.5 0.23 11.1 0.4 1.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|305663825|ref|YP_003860113.1| - 0.11 11.6 3.8 0.2 10.8 2.1 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF148 PF02520.12 gi|305663825|ref|YP_003860113.1| - 0.11 12.2 0.1 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF148 TPR_16 PF13432.1 gi|305663825|ref|YP_003860113.1| - 0.14 12.9 2.5 0.73 10.5 0.2 2.5 1 1 2 3 3 3 0 Tetratricopeptide repeat DUF4041 PF13250.1 gi|305663825|ref|YP_003860113.1| - 0.16 11.5 0.3 22 4.6 0.0 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4041) DUF1515 PF07439.6 gi|305663825|ref|YP_003860113.1| - 0.16 11.7 0.9 1 9.2 0.4 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) LemA PF04011.7 gi|305663825|ref|YP_003860113.1| - 0.18 10.8 0.6 3.8 6.5 0.1 2.2 1 1 1 2 2 2 0 LemA family PRKCSH_1 PF13015.1 gi|305663825|ref|YP_003860113.1| - 0.19 11.1 0.5 2.8 7.3 0.1 2.1 1 1 1 2 2 2 0 Glucosidase II beta subunit-like protein Glu-tRNAGln PF02686.10 gi|305663825|ref|YP_003860113.1| - 0.22 11.3 0.7 1 9.2 0.2 2.1 1 1 1 2 2 2 0 Glu-tRNAGln amidotransferase C subunit XhlA PF10779.4 gi|305663825|ref|YP_003860113.1| - 0.25 11.2 2.3 0.22 11.4 0.6 1.7 2 0 0 2 2 1 0 Haemolysin XhlA Med9 PF07544.8 gi|305663825|ref|YP_003860113.1| - 0.31 10.8 4.2 0.72 9.6 0.3 2.9 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Rootletin PF15035.1 gi|305663825|ref|YP_003860113.1| - 0.39 10.6 7.8 1.3 9.0 5.1 2.0 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Rabaptin PF03528.10 gi|305663825|ref|YP_003860113.1| - 0.4 10.6 5.1 0.068 13.0 1.2 1.4 2 0 0 2 2 1 0 Rabaptin GvpK PF05121.7 gi|305663825|ref|YP_003860113.1| - 0.47 10.3 3.2 5.6 6.8 0.2 2.5 1 1 1 2 2 2 0 Gas vesicle protein K DUF4200 PF13863.1 gi|305663825|ref|YP_003860113.1| - 0.77 9.7 8.1 19 5.1 5.6 2.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) TraC PF07820.7 gi|305663825|ref|YP_003860113.1| - 0.87 9.8 8.7 4.5 7.5 2.9 2.8 1 1 2 3 3 3 0 TraC-like protein G-gamma PF00631.17 gi|305663825|ref|YP_003860113.1| - 0.93 9.2 4.6 6.4 6.6 0.1 3.1 1 1 2 3 3 3 0 GGL domain ADIP PF11559.3 gi|305663825|ref|YP_003860113.1| - 0.99 9.2 6.0 5.7 6.8 2.7 2.4 2 1 0 2 2 2 0 Afadin- and alpha -actinin-Binding Prefoldin_2 PF01920.15 gi|305663825|ref|YP_003860113.1| - 1.2 8.9 4.5 9.7 6.0 1.1 2.6 1 1 1 2 2 2 0 Prefoldin subunit DUF4530 PF15039.1 gi|305663825|ref|YP_003860113.1| - 1.4 8.8 6.9 0.8 9.6 1.4 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF4530) DUF2630 PF10944.3 gi|305663825|ref|YP_003860113.1| - 1.8 8.6 6.0 6.4 6.9 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2630) NYD-SP28 PF14772.1 gi|305663825|ref|YP_003860113.1| - 3.6 7.7 7.8 1 9.4 3.0 1.8 2 1 0 2 2 1 0 Sperm tail LSM PF01423.17 gi|305663826|ref|YP_003860114.1| - 0.018 14.6 1.7 0.029 13.9 0.8 1.7 1 1 1 2 2 2 0 LSM domain SM-ATX PF14438.1 gi|305663826|ref|YP_003860114.1| - 0.099 12.5 0.1 0.17 11.8 0.1 1.4 1 0 0 1 1 1 0 Ataxin 2 SM domain ABC_tran PF00005.22 gi|305663827|ref|YP_003860115.1| - 9.4e-25 87.5 0.0 1.3e-24 87.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663827|ref|YP_003860115.1| - 2.2e-12 47.5 6.3 1.2e-08 35.2 1.6 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663827|ref|YP_003860115.1| - 4.2e-06 26.1 0.1 0.01 15.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305663827|ref|YP_003860115.1| - 2.4e-05 24.7 0.5 0.00012 22.4 0.1 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|305663827|ref|YP_003860115.1| - 0.00014 21.3 0.1 0.00025 20.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|305663827|ref|YP_003860115.1| - 0.0005 19.6 0.0 0.44 9.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_14 PF13173.1 gi|305663827|ref|YP_003860115.1| - 0.0014 18.5 0.8 0.078 12.8 0.1 2.3 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|305663827|ref|YP_003860115.1| - 0.003 16.6 5.9 0.11 11.4 1.6 2.2 1 1 1 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|305663827|ref|YP_003860115.1| - 0.0044 16.7 1.1 0.0066 16.1 0.0 1.8 2 1 0 2 2 2 1 Archaeal ATPase AAA_25 PF13481.1 gi|305663827|ref|YP_003860115.1| - 0.005 16.2 0.0 0.009 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|305663827|ref|YP_003860115.1| - 0.006 16.3 0.3 0.014 15.1 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|305663827|ref|YP_003860115.1| - 0.01 15.9 0.7 0.066 13.3 0.5 2.1 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305663827|ref|YP_003860115.1| - 0.01 14.7 0.0 0.022 13.6 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.10 gi|305663827|ref|YP_003860115.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.4 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|305663827|ref|YP_003860115.1| - 0.012 15.3 0.2 0.053 13.2 0.0 1.9 2 0 0 2 2 2 0 NTPase AAA PF00004.24 gi|305663827|ref|YP_003860115.1| - 0.017 15.3 0.5 0.2 11.8 0.3 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305663827|ref|YP_003860115.1| - 0.02 15.7 0.4 0.11 13.3 0.3 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305663827|ref|YP_003860115.1| - 0.039 13.5 0.0 0.059 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|305663827|ref|YP_003860115.1| - 0.042 12.9 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin cobW PF02492.14 gi|305663827|ref|YP_003860115.1| - 0.043 13.2 0.3 0.087 12.2 0.2 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|305663827|ref|YP_003860115.1| - 0.052 12.9 0.0 0.087 12.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V AAA_16 PF13191.1 gi|305663827|ref|YP_003860115.1| - 0.054 13.4 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain SRP54 PF00448.17 gi|305663827|ref|YP_003860115.1| - 0.068 12.6 0.2 0.11 11.9 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain UPF0079 PF02367.12 gi|305663827|ref|YP_003860115.1| - 0.12 11.9 0.5 0.43 10.2 0.1 2.0 3 0 0 3 3 3 0 Uncharacterised P-loop hydrolase UPF0079 DUF1514 PF07438.6 gi|305663828|ref|YP_003860116.1| - 9 6.2 9.4 6.7 6.7 3.7 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1514) PDGLE PF13190.1 gi|305663829|ref|YP_003860117.1| - 2.4e-11 43.1 0.3 3.1e-11 42.8 0.2 1.1 1 0 0 1 1 1 1 PDGLE domain ABC2_membrane_4 PF12730.2 gi|305663829|ref|YP_003860117.1| - 0.013 14.6 3.6 0.02 14.0 2.3 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|305663829|ref|YP_003860117.1| - 0.091 11.7 1.1 0.11 11.5 0.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|305663829|ref|YP_003860117.1| - 0.35 9.7 3.3 1.5 7.6 0.7 2.0 2 0 0 2 2 2 0 ABC-2 family transporter protein FtsX PF02687.16 gi|305663829|ref|YP_003860117.1| - 2 8.2 7.6 3.7 7.3 5.3 1.5 1 1 0 1 1 1 0 FtsX-like permease family CbiM PF01891.11 gi|305663830|ref|YP_003860118.1| - 1e-61 208.1 22.3 1.2e-61 207.9 15.5 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region ECF-ribofla_trS PF07155.7 gi|305663830|ref|YP_003860118.1| - 0.17 11.5 31.0 0.04 13.6 10.6 3.1 1 1 0 2 2 2 0 ECF-type riboflavin transporter, S component DUF3816 PF12822.2 gi|305663830|ref|YP_003860118.1| - 9 6.1 37.4 0.29 11.0 13.5 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3816) ACT_6 PF13740.1 gi|305663831|ref|YP_003860119.1| - 2.7e-18 65.4 0.5 3.2e-18 65.2 0.4 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|305663831|ref|YP_003860119.1| - 1.1e-14 53.4 1.5 1.5e-14 53.1 1.0 1.2 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|305663831|ref|YP_003860119.1| - 1.1e-06 28.8 0.7 1.5e-06 28.4 0.5 1.2 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.1 gi|305663831|ref|YP_003860119.1| - 3.6e-05 23.1 0.9 5.1e-05 22.7 0.6 1.3 1 0 0 1 1 1 1 ACT domain DUF711 PF05167.7 gi|305663832|ref|YP_003860120.1| - 1.6e-145 484.8 7.3 2e-145 484.5 5.1 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) PadR PF03551.9 gi|305663833|ref|YP_003860121.1| - 6.9e-15 54.5 2.7 1.4e-14 53.5 1.9 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Ribosomal_S19e PF01090.14 gi|305663833|ref|YP_003860121.1| - 0.0054 16.1 0.0 0.0092 15.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S19e HxlR PF01638.12 gi|305663833|ref|YP_003860121.1| - 0.021 14.4 0.9 0.047 13.3 0.2 1.9 1 1 0 2 2 2 0 HxlR-like helix-turn-helix PaaX PF07848.7 gi|305663833|ref|YP_003860121.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 PaaX-like protein DUF4364 PF14277.1 gi|305663833|ref|YP_003860121.1| - 0.056 13.0 0.0 0.095 12.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Mrr_N PF14338.1 gi|305663833|ref|YP_003860121.1| - 0.068 13.2 0.2 0.21 11.6 0.0 1.9 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_45 PF14947.1 gi|305663833|ref|YP_003860121.1| - 0.15 11.9 5.4 0.23 11.3 0.2 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix Erythrovirus_X PF06795.6 gi|305663833|ref|YP_003860121.1| - 0.15 12.1 1.8 1.6 8.8 0.3 2.4 1 1 1 2 2 2 0 Erythrovirus X protein ABC_tran PF00005.22 gi|305663834|ref|YP_003860122.1| - 4.3e-31 108.0 0.0 5.7e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663834|ref|YP_003860122.1| - 1.5e-13 51.4 0.5 1.3e-06 28.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305663834|ref|YP_003860122.1| - 7.5e-05 22.0 0.0 0.012 14.8 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|305663834|ref|YP_003860122.1| - 0.00029 21.1 0.6 0.0011 19.2 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|305663834|ref|YP_003860122.1| - 0.00082 20.1 0.5 0.0013 19.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305663834|ref|YP_003860122.1| - 0.0012 17.9 0.7 0.44 9.5 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|305663834|ref|YP_003860122.1| - 0.0018 17.7 0.1 0.0032 16.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305663834|ref|YP_003860122.1| - 0.0024 17.9 0.1 0.0033 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|305663834|ref|YP_003860122.1| - 0.0025 17.0 0.1 0.004 16.3 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|305663834|ref|YP_003860122.1| - 0.003 17.6 0.2 0.0056 16.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|305663834|ref|YP_003860122.1| - 0.0071 16.6 0.2 0.013 15.7 0.1 1.4 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|305663834|ref|YP_003860122.1| - 0.01 15.5 0.2 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_14 PF13173.1 gi|305663834|ref|YP_003860122.1| - 0.013 15.4 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|305663834|ref|YP_003860122.1| - 0.014 15.3 0.0 0.042 13.8 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA12 PF10443.4 gi|305663834|ref|YP_003860122.1| - 0.014 13.9 0.0 0.02 13.3 0.0 1.2 1 0 0 1 1 1 0 RNA12 protein AAA_10 PF12846.2 gi|305663834|ref|YP_003860122.1| - 0.017 14.5 0.0 0.038 13.4 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain Arch_ATPase PF01637.13 gi|305663834|ref|YP_003860122.1| - 0.017 14.8 0.1 0.033 13.8 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase T2SE PF00437.15 gi|305663834|ref|YP_003860122.1| - 0.026 13.4 0.2 0.053 12.4 0.1 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_25 PF13481.1 gi|305663834|ref|YP_003860122.1| - 0.027 13.8 0.3 0.054 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|305663834|ref|YP_003860122.1| - 0.034 13.6 0.1 1.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) cobW PF02492.14 gi|305663834|ref|YP_003860122.1| - 0.045 13.1 0.2 0.073 12.5 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|305663834|ref|YP_003860122.1| - 0.049 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|305663834|ref|YP_003860122.1| - 0.07 12.7 0.2 0.12 12.0 0.1 1.5 1 1 0 1 1 1 0 NACHT domain AAA_33 PF13671.1 gi|305663834|ref|YP_003860122.1| - 0.097 12.5 0.1 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|305663834|ref|YP_003860122.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_24 PF13479.1 gi|305663834|ref|YP_003860122.1| - 0.14 11.7 0.2 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|305663834|ref|YP_003860122.1| - 0.31 11.0 1.6 0.68 9.9 1.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF2970 PF11174.3 gi|305663835|ref|YP_003860123.1| - 0.022 14.3 0.8 0.059 12.9 0.5 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) CARDB PF07705.6 gi|305663835|ref|YP_003860123.1| - 0.056 13.4 11.2 0.22 11.6 0.0 6.1 7 1 0 7 7 7 0 CARDB MacB_PCD PF12704.2 gi|305663836|ref|YP_003860124.1| - 8.6e-32 110.5 1.0 8.6e-32 110.5 0.7 1.6 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|305663836|ref|YP_003860124.1| - 2.8e-18 65.8 13.0 2.8e-18 65.8 9.0 2.4 2 0 0 2 2 2 1 FtsX-like permease family Peptidase_M28 PF04389.12 gi|305663837|ref|YP_003860125.1| - 1.1e-15 57.8 0.0 2.1e-15 56.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase family M28 AAA_5 PF07728.9 gi|305663838|ref|YP_003860126.1| - 8.8e-28 96.7 0.0 6e-27 94.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|305663838|ref|YP_003860126.1| - 7.1e-06 25.6 0.0 1.3e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|305663838|ref|YP_003860126.1| - 1.6e-05 25.0 0.0 2.9e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain MCM PF00493.18 gi|305663838|ref|YP_003860126.1| - 7.1e-05 21.7 0.0 0.00014 20.7 0.0 1.6 1 0 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|305663838|ref|YP_003860126.1| - 8.3e-05 22.7 0.0 0.00032 20.8 0.0 2.1 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|305663838|ref|YP_003860126.1| - 0.00022 20.4 0.1 0.0024 17.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_22 PF13401.1 gi|305663838|ref|YP_003860126.1| - 0.00044 20.4 0.1 0.0071 16.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain GAT PF03127.9 gi|305663838|ref|YP_003860126.1| - 0.0014 18.5 0.2 0.0031 17.4 0.1 1.6 1 0 0 1 1 1 1 GAT domain Viral_helicase1 PF01443.13 gi|305663838|ref|YP_003860126.1| - 0.032 13.7 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RuvB_N PF05496.7 gi|305663838|ref|YP_003860126.1| - 0.042 12.8 0.1 0.18 10.7 0.1 1.9 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Sigma54_activat PF00158.21 gi|305663838|ref|YP_003860126.1| - 0.045 13.2 0.3 0.35 10.3 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain TBCA PF02970.11 gi|305663838|ref|YP_003860126.1| - 0.31 11.1 3.9 0.2 11.7 1.2 1.8 2 0 0 2 2 2 0 Tubulin binding cofactor A VWA_2 PF13519.1 gi|305663839|ref|YP_003860127.1| - 2.5e-09 37.4 0.1 5.3e-09 36.4 0.0 1.5 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|305663839|ref|YP_003860127.1| - 3.6e-08 33.3 0.3 3.6e-08 33.3 0.2 1.8 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|305663839|ref|YP_003860127.1| - 3.8e-06 26.6 0.0 7.2e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|305663839|ref|YP_003860127.1| - 3.7e-05 22.9 0.0 9.4e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 VWA domain containing CoxE-like protein DUF4023 PF13215.1 gi|305663839|ref|YP_003860127.1| - 0.15 11.8 1.2 2.2 8.1 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF4023) DUF1829 PF08862.5 gi|305663839|ref|YP_003860127.1| - 2.5 8.4 5.1 2.9 8.2 0.2 3.1 3 1 0 3 3 3 0 Domain of unknown function DUF1829 PK PF00224.16 gi|305663840|ref|YP_003860128.1| - 7.8e-95 317.4 1.4 1.1e-94 316.9 1.0 1.1 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|305663840|ref|YP_003860128.1| - 7.2e-19 67.4 0.0 2.4e-18 65.7 0.0 1.9 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.9 gi|305663840|ref|YP_003860128.1| - 8e-05 21.6 0.5 0.00028 19.8 0.0 2.0 2 0 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family KH_3 PF13014.1 gi|305663841|ref|YP_003860129.1| - 0.0074 15.9 0.4 0.016 14.8 0.3 1.5 1 0 0 1 1 1 1 KH domain Thioredoxin_8 PF13905.1 gi|305663841|ref|YP_003860129.1| - 0.029 14.4 0.2 0.069 13.2 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin-like DUF4362 PF14275.1 gi|305663841|ref|YP_003860129.1| - 0.064 13.2 0.7 0.091 12.8 0.2 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4362) KH_1 PF00013.24 gi|305663841|ref|YP_003860129.1| - 0.072 12.7 0.5 0.14 11.8 0.4 1.5 1 0 0 1 1 1 0 KH domain Fucose_iso_C PF02952.12 gi|305663842|ref|YP_003860130.1| - 1.3e-05 24.7 0.0 2.2e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Flavin_Reduct PF01613.13 gi|305663843|ref|YP_003860131.1| - 4.1e-20 72.2 0.0 4.8e-20 71.9 0.0 1.0 1 0 0 1 1 1 1 Flavin reductase like domain Epimerase PF01370.16 gi|305663844|ref|YP_003860132.1| - 5.8e-44 150.2 0.1 8.8e-44 149.7 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|305663844|ref|YP_003860132.1| - 1.1e-17 63.6 0.0 1.4e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|305663844|ref|YP_003860132.1| - 2.9e-14 52.6 0.0 1.9e-13 50.0 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|305663844|ref|YP_003860132.1| - 3e-13 49.3 0.0 3.9e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|305663844|ref|YP_003860132.1| - 2e-09 36.7 0.0 6.5e-08 31.8 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein Saccharop_dh PF03435.13 gi|305663844|ref|YP_003860132.1| - 0.00016 20.8 0.0 0.00022 20.3 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|305663844|ref|YP_003860132.1| - 0.0093 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|305663844|ref|YP_003860132.1| - 0.024 14.5 0.0 0.045 13.6 0.0 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus TrkA_N PF02254.13 gi|305663844|ref|YP_003860132.1| - 0.025 14.5 0.1 0.052 13.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain adh_short PF00106.20 gi|305663844|ref|YP_003860132.1| - 0.034 14.0 0.0 0.056 13.3 0.0 1.5 1 1 0 1 1 1 0 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|305663844|ref|YP_003860132.1| - 0.088 12.8 0.0 0.17 11.8 0.0 1.6 2 1 0 2 2 2 0 NADH(P)-binding DUF711 PF05167.7 gi|305663845|ref|YP_003860133.1| - 2.4e-50 171.4 0.0 3e-50 171.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) NurA PF09376.5 gi|305663846|ref|YP_003860134.1| - 1.2e-10 41.3 4.9 2e-10 40.5 3.4 1.4 1 1 0 1 1 1 1 NurA domain Thioredoxin PF00085.15 gi|305663847|ref|YP_003860135.1| - 2.1e-10 40.1 0.0 2.9e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|305663847|ref|YP_003860135.1| - 9.1e-08 32.2 0.5 7.5e-07 29.3 0.3 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|305663847|ref|YP_003860135.1| - 2.2e-05 24.1 0.1 4.1e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|305663847|ref|YP_003860135.1| - 0.00063 19.3 0.0 0.00086 18.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_7 PF13899.1 gi|305663847|ref|YP_003860135.1| - 0.07 13.1 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Thioredoxin-like DUF123 PF01986.11 gi|305663848|ref|YP_003860136.1| - 5.7e-23 80.8 0.0 8.8e-23 80.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF123 GIY-YIG PF01541.19 gi|305663848|ref|YP_003860136.1| - 0.00082 19.6 0.3 0.0016 18.7 0.2 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain CysG_dimeriser PF10414.4 gi|305663848|ref|YP_003860136.1| - 0.19 11.2 0.6 0.32 10.4 0.4 1.3 1 0 0 1 1 1 0 Sirohaem synthase dimerisation region YvfG PF09628.5 gi|305663849|ref|YP_003860137.1| - 0.23 11.6 1.7 0.83 9.8 0.1 2.6 3 0 0 3 3 3 0 YvfG protein Prok-JAB PF14464.1 gi|305663850|ref|YP_003860138.1| - 2.2e-09 36.8 0.0 3e-09 36.3 0.0 1.3 1 1 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|305663850|ref|YP_003860138.1| - 0.00016 21.3 0.0 0.00026 20.7 0.0 1.3 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Isochorismatase PF00857.15 gi|305663851|ref|YP_003860139.1| - 3.7e-37 127.9 0.0 4.1e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Archease PF01951.11 gi|305663852|ref|YP_003860140.1| - 9e-46 155.2 0.4 1e-45 155.0 0.3 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) DUF1886 PF09171.5 gi|305663853|ref|YP_003860141.1| - 1e-57 195.0 0.1 1.2e-57 194.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1886) HARE-HTH PF05066.8 gi|305663853|ref|YP_003860141.1| - 0.041 14.2 0.0 14 6.0 0.0 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain HIT PF01230.18 gi|305663854|ref|YP_003860142.1| - 2.5e-14 53.6 0.1 4.5e-14 52.7 0.0 1.4 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|305663854|ref|YP_003860142.1| - 1.1e-06 28.8 0.2 1.7e-06 28.2 0.1 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|305663854|ref|YP_003860142.1| - 1.3e-05 24.8 1.9 2.5e-05 23.8 1.3 1.5 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Peptidase_A24 PF01478.13 gi|305663855|ref|YP_003860143.1| - 0.00077 19.5 17.7 0.00077 19.5 12.3 2.2 2 1 1 3 3 3 1 Type IV leader peptidase family Rad51 PF08423.6 gi|305663856|ref|YP_003860144.1| - 6.1e-94 313.6 0.0 7.5e-94 313.4 0.0 1.1 1 0 0 1 1 1 1 Rad51 RecA PF00154.16 gi|305663856|ref|YP_003860144.1| - 3e-13 49.5 0.2 4e-13 49.1 0.1 1.1 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_25 PF13481.1 gi|305663856|ref|YP_003860144.1| - 1.4e-12 47.3 0.0 2.2e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain KaiC PF06745.8 gi|305663856|ref|YP_003860144.1| - 8.8e-12 44.6 0.0 1.4e-11 43.9 0.0 1.5 1 0 0 1 1 1 1 KaiC HHH_5 PF14520.1 gi|305663856|ref|YP_003860144.1| - 1.2e-05 25.3 0.1 1.2e-05 25.3 0.1 2.4 3 1 0 3 3 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|305663856|ref|YP_003860144.1| - 0.0015 18.4 1.4 0.0079 16.1 0.3 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4332) AAA_22 PF13401.1 gi|305663856|ref|YP_003860144.1| - 0.0078 16.3 0.1 0.026 14.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain DUF2857 PF11198.3 gi|305663856|ref|YP_003860144.1| - 0.013 14.9 0.3 0.025 14.0 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) AAA_18 PF13238.1 gi|305663856|ref|YP_003860144.1| - 0.02 15.1 0.0 0.11 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain RNA_pol_A_CTD PF03118.10 gi|305663856|ref|YP_003860144.1| - 0.023 14.1 0.5 0.11 11.9 0.1 2.2 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain EutA PF06277.6 gi|305663856|ref|YP_003860144.1| - 0.03 12.9 0.2 0.072 11.6 0.0 1.6 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Tn7_Tnp_TnsA_C PF08721.6 gi|305663856|ref|YP_003860144.1| - 0.03 14.3 0.4 0.16 12.0 0.1 2.3 2 0 0 2 2 2 0 TnsA endonuclease C terminal TrwB_AAD_bind PF10412.4 gi|305663856|ref|YP_003860144.1| - 0.059 11.9 0.0 0.1 11.2 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain UPF0079 PF02367.12 gi|305663856|ref|YP_003860144.1| - 0.065 12.8 0.2 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 PAXNEB PF05625.6 gi|305663856|ref|YP_003860144.1| - 0.085 11.6 1.0 0.27 10.0 0.2 1.9 1 1 1 2 2 2 0 PAXNEB protein PduV-EutP PF10662.4 gi|305663856|ref|YP_003860144.1| - 0.094 12.2 0.1 0.27 10.7 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Cdd1 PF11731.3 gi|305663856|ref|YP_003860144.1| - 0.16 11.9 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus tRNA-Thr_ED PF08915.6 gi|305663857|ref|YP_003860145.1| - 1.4e-52 177.3 0.1 2.9e-52 176.3 0.1 1.6 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.15 gi|305663857|ref|YP_003860145.1| - 1.4e-28 98.6 0.9 5.1e-27 93.6 0.5 2.9 2 1 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.20 gi|305663857|ref|YP_003860145.1| - 7.6e-17 61.4 0.8 1.9e-16 60.1 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) KaiC PF06745.8 gi|305663857|ref|YP_003860145.1| - 0.03 13.4 0.3 1.6 7.7 0.0 3.0 3 0 0 3 3 3 0 KaiC GHMP_kinases_N PF00288.21 gi|305663858|ref|YP_003860146.1| - 6.4e-12 45.3 0.6 1.5e-10 41.0 0.0 2.3 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|305663858|ref|YP_003860146.1| - 9.8e-12 44.9 0.2 2.2e-11 43.7 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal Mrr_cat PF04471.7 gi|305663859|ref|YP_003860147.1| - 5e-06 26.2 0.1 9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Restriction endonuclease NERD PF08378.6 gi|305663859|ref|YP_003860147.1| - 0.00015 21.9 0.7 0.00022 21.4 0.5 1.3 1 0 0 1 1 1 1 Nuclease-related domain DUF234 PF03008.9 gi|305663859|ref|YP_003860147.1| - 0.072 13.2 2.3 0.18 11.9 1.6 1.7 1 1 0 1 1 1 0 Archaea bacterial proteins of unknown function Memo PF01875.12 gi|305663860|ref|YP_003860148.1| - 9.9e-65 218.1 0.0 1.2e-64 217.9 0.0 1.0 1 0 0 1 1 1 1 Memo-like protein LigB PF02900.13 gi|305663860|ref|YP_003860148.1| - 0.00011 21.3 0.0 0.0023 16.9 0.0 2.1 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase NAD_binding_8 PF13450.1 gi|305663860|ref|YP_003860148.1| - 0.042 13.8 0.0 0.08 12.9 0.0 1.5 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Aldo_ket_red PF00248.16 gi|305663861|ref|YP_003860149.1| - 5.2e-61 205.9 0.1 6.1e-61 205.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_Tc3_1 PF11427.3 gi|305663862|ref|YP_003860150.1| - 0.61 9.7 2.7 4.5 6.9 0.0 2.8 3 0 0 3 3 3 0 Tc3 transposase HAS-barrel PF09378.5 gi|305663863|ref|YP_003860151.1| - 0.1 12.5 0.9 0.76 9.7 0.1 2.2 2 0 0 2 2 2 0 HAS barrel domain Peptidase_M50 PF02163.17 gi|305663863|ref|YP_003860151.1| - 0.13 11.1 0.8 0.26 10.2 0.2 1.4 1 1 0 2 2 2 0 Peptidase family M50 Cob_adeno_trans PF01923.13 gi|305663866|ref|YP_003860154.1| - 1.3e-34 119.3 0.0 1.5e-34 119.1 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase UbiA PF01040.13 gi|305663867|ref|YP_003860155.1| - 4.9e-38 130.8 25.2 5.9e-38 130.5 17.4 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF1129 PF06570.6 gi|305663867|ref|YP_003860155.1| - 1.2 8.3 10.1 0.056 12.7 1.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) FAD_oxidored PF12831.2 gi|305663868|ref|YP_003860156.1| - 1.2e-08 34.4 0.0 0.00065 18.8 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.19 gi|305663868|ref|YP_003860156.1| - 1.2e-07 30.9 0.3 3.6e-07 29.4 0.1 1.8 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|305663868|ref|YP_003860156.1| - 1.5e-07 30.6 0.1 2.2e-07 30.0 0.1 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|305663868|ref|YP_003860156.1| - 5.8e-07 28.7 0.1 3.6e-06 26.1 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.14 gi|305663868|ref|YP_003860156.1| - 8.8e-07 28.2 3.8 6.7e-05 22.1 0.1 2.6 3 0 0 3 3 3 2 FAD binding domain Trp_halogenase PF04820.9 gi|305663868|ref|YP_003860156.1| - 3e-06 26.1 0.1 0.089 11.4 0.1 3.0 3 0 0 3 3 3 2 Tryptophan halogenase Thi4 PF01946.12 gi|305663868|ref|YP_003860156.1| - 4.6e-06 25.9 0.8 1.1e-05 24.7 0.2 1.8 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|305663868|ref|YP_003860156.1| - 1.4e-05 23.7 0.5 4.4e-05 22.1 0.4 1.7 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|305663868|ref|YP_003860156.1| - 4.4e-05 23.4 0.2 4.4e-05 23.4 0.1 2.2 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|305663868|ref|YP_003860156.1| - 7.7e-05 21.7 0.2 0.012 14.5 0.1 2.6 3 0 0 3 3 3 1 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|305663868|ref|YP_003860156.1| - 0.00018 21.4 1.6 0.00034 20.5 1.1 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|305663868|ref|YP_003860156.1| - 0.0012 19.2 1.0 0.0033 17.8 0.5 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase SE PF08491.5 gi|305663868|ref|YP_003860156.1| - 0.021 13.6 0.0 0.034 12.9 0.0 1.2 1 0 0 1 1 1 0 Squalene epoxidase InvH PF04741.7 gi|305663868|ref|YP_003860156.1| - 0.046 13.5 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 InvH outer membrane lipoprotein AlaDh_PNT_C PF01262.16 gi|305663868|ref|YP_003860156.1| - 0.084 12.4 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|305663868|ref|YP_003860156.1| - 0.16 12.0 0.9 0.59 10.1 0.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Nol1_Nop2_Fmu PF01189.12 gi|305663869|ref|YP_003860157.1| - 1.5e-43 149.1 0.0 1.9e-43 148.8 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|305663869|ref|YP_003860157.1| - 1.2e-07 31.4 0.0 5.4e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain TRM PF02005.11 gi|305663869|ref|YP_003860157.1| - 0.0074 15.2 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Cons_hypoth95 PF03602.10 gi|305663869|ref|YP_003860157.1| - 0.11 11.9 0.0 0.18 11.1 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Ubie_methyltran PF01209.13 gi|305663869|ref|YP_003860157.1| - 0.12 11.4 0.0 0.24 10.4 0.0 1.4 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CTP_synth_N PF06418.9 gi|305663870|ref|YP_003860158.1| - 5.3e-131 435.7 2.1 6.9e-131 435.3 1.5 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|305663870|ref|YP_003860158.1| - 1.9e-44 151.4 0.0 5.9e-44 149.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|305663870|ref|YP_003860158.1| - 2.1e-09 37.1 0.0 5e-09 35.9 0.0 1.6 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|305663870|ref|YP_003860158.1| - 2.8e-07 30.1 0.0 5.6e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|305663870|ref|YP_003860158.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AAA PF00004.24 gi|305663873|ref|YP_003860161.1| - 9.8e-23 80.8 0.3 4.6e-22 78.6 0.0 2.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305663873|ref|YP_003860161.1| - 3.8e-07 30.9 0.4 6.2e-06 27.0 0.0 2.9 2 2 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|305663873|ref|YP_003860161.1| - 6.2e-06 26.1 0.0 2.2e-05 24.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|305663873|ref|YP_003860161.1| - 1.3e-05 24.4 0.0 2.5e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|305663873|ref|YP_003860161.1| - 3.1e-05 24.0 0.5 0.005 16.8 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663873|ref|YP_003860161.1| - 0.00011 22.3 5.9 0.029 14.5 0.0 3.9 2 2 1 4 4 4 1 AAA domain AAA_5 PF07728.9 gi|305663873|ref|YP_003860161.1| - 0.00035 20.2 0.1 0.0011 18.7 0.0 1.9 2 0 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|305663873|ref|YP_003860161.1| - 0.00055 20.2 1.8 0.0025 18.1 0.0 2.6 2 1 1 3 3 2 1 AAA domain RuvB_N PF05496.7 gi|305663873|ref|YP_003860161.1| - 0.00055 19.0 0.0 0.049 12.6 0.0 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus RNA_helicase PF00910.17 gi|305663873|ref|YP_003860161.1| - 0.00068 19.7 0.0 0.0033 17.5 0.0 2.2 2 0 0 2 2 1 1 RNA helicase IstB_IS21 PF01695.12 gi|305663873|ref|YP_003860161.1| - 0.00084 18.7 0.2 0.0041 16.5 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|305663873|ref|YP_003860161.1| - 0.0011 18.6 0.2 0.0033 17.1 0.2 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|305663873|ref|YP_003860161.1| - 0.0016 17.4 0.5 0.034 13.0 0.0 2.6 2 1 0 2 2 2 1 Protein of unknown function (DUF815) AAA_23 PF13476.1 gi|305663873|ref|YP_003860161.1| - 0.0022 18.3 0.7 0.013 15.8 0.0 2.4 1 1 2 3 3 3 1 AAA domain AAA_14 PF13173.1 gi|305663873|ref|YP_003860161.1| - 0.0042 16.9 0.0 0.019 14.9 0.0 2.1 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|305663873|ref|YP_003860161.1| - 0.005 15.6 1.6 0.016 13.9 0.0 2.4 2 1 0 2 2 2 1 TIP49 C-terminus AAA_28 PF13521.1 gi|305663873|ref|YP_003860161.1| - 0.0098 15.8 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305663873|ref|YP_003860161.1| - 0.013 15.0 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|305663873|ref|YP_003860161.1| - 0.014 14.8 0.0 0.53 9.6 0.0 2.6 2 1 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|305663873|ref|YP_003860161.1| - 0.017 14.5 0.0 0.098 12.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305663873|ref|YP_003860161.1| - 0.022 14.4 0.3 0.55 9.8 0.0 2.7 2 0 0 2 2 2 0 NACHT domain KTI12 PF08433.5 gi|305663873|ref|YP_003860161.1| - 0.024 13.8 0.0 0.089 11.9 0.0 2.0 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MMR_HSR1 PF01926.18 gi|305663873|ref|YP_003860161.1| - 0.033 14.1 2.6 0.069 13.1 0.0 2.6 2 2 0 2 2 2 0 50S ribosome-binding GTPase Mg_chelatase PF01078.16 gi|305663873|ref|YP_003860161.1| - 0.053 12.6 0.1 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|305663873|ref|YP_003860161.1| - 0.058 13.0 0.1 3.7 7.2 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B ADK PF00406.17 gi|305663873|ref|YP_003860161.1| - 0.12 12.2 0.5 19 5.1 0.1 3.1 2 1 1 3 3 3 0 Adenylate kinase CobU PF02283.11 gi|305663873|ref|YP_003860161.1| - 0.15 11.4 1.8 53 3.1 0.0 3.8 3 1 1 4 4 4 0 Cobinamide kinase / cobinamide phosphate guanyltransferase La PF05383.12 gi|305663874|ref|YP_003860162.1| - 0.13 12.1 0.1 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 La domain DUF504 PF04457.7 gi|305663875|ref|YP_003860163.1| - 3.6e-13 49.4 1.5 3.6e-13 49.4 1.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF504) DOMON PF03351.12 gi|305663875|ref|YP_003860163.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 DOMON domain AFOR_N PF02730.10 gi|305663876|ref|YP_003860164.1| - 3.6e-31 108.0 0.1 6e-31 107.3 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain AFOR_C PF01314.13 gi|305663876|ref|YP_003860164.1| - 2.7e-18 65.8 0.0 9.7e-18 63.9 0.0 1.8 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 YkyB PF14177.1 gi|305663876|ref|YP_003860164.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 YkyB-like protein DUF58 PF01882.13 gi|305663877|ref|YP_003860165.1| - 7.3e-16 58.0 0.0 1.4e-15 57.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|305663878|ref|YP_003860166.1| - 2.2e-61 205.2 0.1 4e-61 204.3 0.1 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|305663878|ref|YP_003860166.1| - 2.1e-15 56.6 0.0 4.5e-15 55.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|305663878|ref|YP_003860166.1| - 8.6e-07 29.2 0.1 2.3e-06 27.8 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|305663878|ref|YP_003860166.1| - 1.1e-06 28.1 0.0 3.9e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|305663878|ref|YP_003860166.1| - 3.7e-06 25.9 0.1 9e-06 24.7 0.0 1.6 1 1 0 1 1 1 1 MCM2/3/5 family RuvB_N PF05496.7 gi|305663878|ref|YP_003860166.1| - 6.7e-05 22.0 0.6 0.00034 19.7 0.4 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|305663878|ref|YP_003860166.1| - 0.0023 17.0 0.3 1.4 8.0 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Polysacc_synt_C PF14667.1 gi|305663880|ref|YP_003860168.1| - 0.19 11.5 17.0 0.14 11.9 2.3 2.2 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF1673 PF07895.6 gi|305663881|ref|YP_003860169.1| - 0.18 11.3 2.2 0.19 11.2 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF4231 PF14015.1 gi|305663881|ref|YP_003860169.1| - 0.18 11.7 2.1 0.24 11.4 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) PEMT PF04191.8 gi|305663881|ref|YP_003860169.1| - 0.2 11.7 1.4 0.23 11.6 1.0 1.0 1 0 0 1 1 1 0 Phospholipid methyltransferase HTH_20 PF12840.2 gi|305663883|ref|YP_003860171.1| - 3.6e-09 36.3 0.2 6.5e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|305663883|ref|YP_003860171.1| - 2.9e-08 33.2 0.1 5.6e-08 32.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|305663883|ref|YP_003860171.1| - 4e-06 26.4 0.1 7.2e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|305663883|ref|YP_003860171.1| - 5.3e-06 26.0 0.0 1e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|305663883|ref|YP_003860171.1| - 6.8e-05 22.1 0.2 0.00011 21.4 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|305663883|ref|YP_003860171.1| - 0.0023 17.8 0.0 0.0047 16.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|305663883|ref|YP_003860171.1| - 0.0025 17.8 0.1 0.0043 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|305663883|ref|YP_003860171.1| - 0.0053 16.4 0.0 0.0098 15.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|305663883|ref|YP_003860171.1| - 0.026 14.6 0.2 0.042 13.9 0.1 1.5 1 1 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|305663883|ref|YP_003860171.1| - 0.055 13.1 0.0 0.095 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|305663883|ref|YP_003860171.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Cren7 PF11520.3 gi|305663884|ref|YP_003860172.1| - 1e-09 37.8 0.0 1.1e-09 37.7 0.0 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 LigT_PEase PF02834.11 gi|305663885|ref|YP_003860173.1| - 3.5e-28 97.4 0.0 7.8e-18 64.2 0.0 2.2 2 0 0 2 2 2 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|305663885|ref|YP_003860173.1| - 4.5e-17 62.4 0.0 5.5e-17 62.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain 2_5_RNA_ligase2 PF13563.1 gi|305663885|ref|YP_003860173.1| - 7.4e-10 38.7 0.0 8.8e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily DUF3557 PF12078.3 gi|305663885|ref|YP_003860173.1| - 0.0011 18.6 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3557) UxuA PF03786.8 gi|305663885|ref|YP_003860173.1| - 0.029 12.9 0.3 0.048 12.2 0.2 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) Corona_NS2A PF05213.7 gi|305663885|ref|YP_003860173.1| - 0.068 12.4 0.2 0.19 10.9 0.2 1.7 1 1 0 1 1 1 0 Coronavirus NS2A protein CPDase PF07823.6 gi|305663885|ref|YP_003860173.1| - 0.15 11.5 0.0 2 7.8 0.0 2.0 2 0 0 2 2 2 0 Cyclic phosphodiesterase-like protein DegQ PF08181.6 gi|305663885|ref|YP_003860173.1| - 0.41 10.4 0.1 0.41 10.4 0.1 2.1 3 0 0 3 3 3 0 DegQ (SacQ) family tRNA_NucTransf2 PF09249.6 gi|305663886|ref|YP_003860174.1| - 1.1e-35 121.8 0.0 2.2e-35 120.9 0.0 1.5 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|305663886|ref|YP_003860174.1| - 6.5e-11 42.4 0.2 2.9e-10 40.3 0.0 2.2 2 0 0 2 2 2 1 Nucleotidyltransferase domain Zn-ribbon_8 PF09723.5 gi|305663887|ref|YP_003860175.1| - 0.0027 17.6 1.3 0.28 11.1 0.2 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_5 PF13719.1 gi|305663887|ref|YP_003860175.1| - 0.005 16.3 2.8 0.23 11.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|305663887|ref|YP_003860175.1| - 0.014 15.1 3.0 0.65 9.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|305663887|ref|YP_003860175.1| - 0.015 14.7 3.7 0.075 12.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Sgf11 PF08209.6 gi|305663887|ref|YP_003860175.1| - 0.023 14.0 2.6 0.15 11.3 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1595 PF12760.2 gi|305663887|ref|YP_003860175.1| - 0.024 14.4 0.6 5.6 6.8 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|305663887|ref|YP_003860175.1| - 0.025 13.7 2.9 0.18 11.0 0.4 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-P11 PF03854.9 gi|305663887|ref|YP_003860175.1| - 0.031 13.7 1.2 0.073 12.5 0.8 1.7 1 1 0 1 1 1 0 P-11 zinc finger A2L_zn_ribbon PF08792.5 gi|305663887|ref|YP_003860175.1| - 0.045 13.2 2.2 0.4 10.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|305663887|ref|YP_003860175.1| - 0.066 13.0 1.5 0.89 9.4 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG DZR PF12773.2 gi|305663887|ref|YP_003860175.1| - 0.071 12.9 0.1 1.6 8.5 0.0 2.0 2 0 0 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|305663887|ref|YP_003860175.1| - 0.088 12.5 0.5 1.6 8.5 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.9 gi|305663887|ref|YP_003860175.1| - 0.12 12.0 2.1 0.6 9.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS LIM PF00412.17 gi|305663887|ref|YP_003860175.1| - 0.13 12.3 0.7 11 6.1 0.1 2.1 2 0 0 2 2 2 0 LIM domain zf-C3HC4_3 PF13920.1 gi|305663887|ref|YP_003860175.1| - 0.13 11.9 2.3 0.37 10.4 1.6 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) E7 PF00527.13 gi|305663887|ref|YP_003860175.1| - 0.13 12.3 0.3 0.83 9.8 0.3 1.8 1 1 1 2 2 2 0 E7 protein, Early protein DUF2296 PF10058.4 gi|305663887|ref|YP_003860175.1| - 0.15 11.8 0.9 5.4 6.8 0.1 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) UPF0547 PF10571.4 gi|305663887|ref|YP_003860175.1| - 0.17 11.6 2.6 0.79 9.4 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 T4_baseplate PF12322.3 gi|305663887|ref|YP_003860175.1| - 0.18 11.0 0.9 1.6 7.9 0.6 1.9 1 1 0 1 1 1 0 T4 bacteriophage base plate protein TFIIS_C PF01096.13 gi|305663887|ref|YP_003860175.1| - 0.3 10.7 5.3 0.42 10.2 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_4 PF14570.1 gi|305663887|ref|YP_003860175.1| - 0.5 9.9 4.4 2.7 7.6 3.1 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-H2C2_2 PF13465.1 gi|305663887|ref|YP_003860175.1| - 0.55 10.6 2.9 8.4 6.8 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|305663887|ref|YP_003860175.1| - 0.58 9.5 3.6 5.3 6.4 0.5 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-HIT PF04438.11 gi|305663887|ref|YP_003860175.1| - 0.73 9.5 4.7 2.2 7.9 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-C2H2 PF00096.21 gi|305663887|ref|YP_003860175.1| - 2.4 8.6 4.5 17 6.0 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type MCM PF00493.18 gi|305663889|ref|YP_003860177.1| - 1.8e-140 467.4 0.2 2.7e-140 466.8 0.2 1.3 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|305663889|ref|YP_003860177.1| - 1.3e-19 70.8 3.4 1.9e-19 70.3 0.5 2.5 2 0 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.9 gi|305663889|ref|YP_003860177.1| - 1.5e-09 37.7 0.0 4.6e-09 36.1 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.16 gi|305663889|ref|YP_003860177.1| - 1.2e-06 27.8 0.1 0.00052 19.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|305663889|ref|YP_003860177.1| - 3.1e-05 23.5 0.0 7.1e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|305663889|ref|YP_003860177.1| - 0.00047 19.6 0.1 0.0015 18.0 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain CMD PF02627.15 gi|305663889|ref|YP_003860177.1| - 0.036 13.9 0.4 0.11 12.3 0.3 1.8 1 0 0 1 1 1 0 Carboxymuconolactone decarboxylase family AAA_16 PF13191.1 gi|305663889|ref|YP_003860177.1| - 0.039 13.9 0.2 0.57 10.1 0.0 2.8 3 1 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|305663889|ref|YP_003860177.1| - 0.077 13.1 1.6 1.2 9.3 0.0 3.0 2 1 0 2 2 2 0 AAA domain Sld5 PF05916.6 gi|305663890|ref|YP_003860178.1| - 0.00026 21.2 0.2 0.00037 20.7 0.1 1.2 1 0 0 1 1 1 1 GINS complex protein Rep_fac_C PF08542.6 gi|305663891|ref|YP_003860179.1| - 1.8e-22 79.1 0.2 6.1e-22 77.4 0.2 1.9 2 0 0 2 2 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.1 gi|305663891|ref|YP_003860179.1| - 3e-15 56.2 0.1 9.3e-11 41.6 0.1 2.6 2 1 1 3 3 2 2 DNA polymerase III, delta subunit AAA PF00004.24 gi|305663891|ref|YP_003860179.1| - 5.3e-15 55.7 0.0 1.3e-14 54.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|305663891|ref|YP_003860179.1| - 5.3e-08 32.0 0.0 0.00071 18.3 0.0 2.2 1 1 1 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|305663891|ref|YP_003860179.1| - 1.9e-07 30.4 0.0 4.4e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|305663891|ref|YP_003860179.1| - 3.3e-07 30.5 0.1 0.0073 16.4 0.0 2.8 1 1 2 3 3 2 2 AAA domain IstB_IS21 PF01695.12 gi|305663891|ref|YP_003860179.1| - 1.5e-06 27.7 0.0 3.9e-06 26.4 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|305663891|ref|YP_003860179.1| - 7e-06 25.6 0.0 1.6e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.8 gi|305663891|ref|YP_003860179.1| - 1e-05 24.4 0.0 0.0031 16.2 0.0 2.4 2 1 0 2 2 2 1 TIP49 C-terminus AAA_14 PF13173.1 gi|305663891|ref|YP_003860179.1| - 1.2e-05 25.1 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|305663891|ref|YP_003860179.1| - 3e-05 23.6 0.0 7.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_5 PF07728.9 gi|305663891|ref|YP_003860179.1| - 6.3e-05 22.7 0.0 0.0002 21.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|305663891|ref|YP_003860179.1| - 7.8e-05 21.9 0.0 0.044 13.0 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_16 PF13191.1 gi|305663891|ref|YP_003860179.1| - 7.9e-05 22.7 0.0 0.0025 17.8 0.0 2.4 1 1 1 2 2 2 1 AAA ATPase domain AAA_19 PF13245.1 gi|305663891|ref|YP_003860179.1| - 8.7e-05 22.2 0.0 0.00019 21.0 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|305663891|ref|YP_003860179.1| - 0.00025 20.5 0.3 0.0011 18.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663891|ref|YP_003860179.1| - 0.00037 20.8 0.0 0.00093 19.5 0.0 1.8 2 0 0 2 2 1 1 AAA domain ResIII PF04851.10 gi|305663891|ref|YP_003860179.1| - 0.00043 20.1 0.0 0.0033 17.2 0.0 2.1 1 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_17 PF13207.1 gi|305663891|ref|YP_003860179.1| - 0.00049 20.9 0.0 0.0014 19.4 0.0 1.8 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|305663891|ref|YP_003860179.1| - 0.00095 18.6 0.1 0.36 10.3 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase Mg_chelatase PF01078.16 gi|305663891|ref|YP_003860179.1| - 0.00096 18.3 0.0 0.082 12.0 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|305663891|ref|YP_003860179.1| - 0.00098 18.6 0.1 0.0063 16.0 0.0 2.3 2 1 1 3 3 3 1 FtsK/SpoIIIE family Sigma54_activ_2 PF14532.1 gi|305663891|ref|YP_003860179.1| - 0.002 18.2 0.0 0.0087 16.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain SNF2_N PF00176.18 gi|305663891|ref|YP_003860179.1| - 0.0028 16.4 0.0 1.2 7.8 0.0 2.2 1 1 0 2 2 2 2 SNF2 family N-terminal domain AAA_11 PF13086.1 gi|305663891|ref|YP_003860179.1| - 0.0038 16.8 0.0 0.013 15.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305663891|ref|YP_003860179.1| - 0.0049 16.3 0.2 1.9 7.8 0.0 2.3 1 1 0 2 2 2 1 AAA-like domain KTI12 PF08433.5 gi|305663891|ref|YP_003860179.1| - 0.0079 15.4 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|305663891|ref|YP_003860179.1| - 0.017 15.0 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305663891|ref|YP_003860179.1| - 0.019 13.9 0.0 0.11 11.3 0.0 2.1 3 0 0 3 3 3 0 Type II/IV secretion system protein Arch_ATPase PF01637.13 gi|305663891|ref|YP_003860179.1| - 0.028 14.1 0.0 0.25 11.0 0.0 2.1 1 1 1 2 2 2 0 Archaeal ATPase AAA_33 PF13671.1 gi|305663891|ref|YP_003860179.1| - 0.028 14.3 0.0 0.054 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|305663891|ref|YP_003860179.1| - 0.034 13.0 0.0 0.05 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|305663891|ref|YP_003860179.1| - 0.045 12.7 0.1 0.31 9.9 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|305663891|ref|YP_003860179.1| - 0.047 13.2 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Viral_helicase1 PF01443.13 gi|305663891|ref|YP_003860179.1| - 0.051 13.0 0.0 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.10 gi|305663891|ref|YP_003860179.1| - 0.055 13.1 0.1 2.2 7.9 0.0 2.4 1 1 1 2 2 2 0 NTPase AAA_30 PF13604.1 gi|305663891|ref|YP_003860179.1| - 0.089 12.3 0.7 1.7 8.2 0.0 2.5 2 1 0 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|305663891|ref|YP_003860179.1| - 0.095 12.8 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 RNA helicase Zeta_toxin PF06414.7 gi|305663891|ref|YP_003860179.1| - 0.11 11.6 0.0 0.24 10.4 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin SseB_C PF14581.1 gi|305663891|ref|YP_003860179.1| - 0.12 12.2 0.0 0.44 10.4 0.0 2.0 1 0 0 1 1 1 0 SseB protein C-terminal domain AAA PF00004.24 gi|305663892|ref|YP_003860180.1| - 1.7e-18 67.1 0.0 5e-18 65.5 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|305663892|ref|YP_003860180.1| - 3.5e-17 62.2 0.3 1.5e-08 33.7 0.0 3.2 2 1 0 3 3 3 3 Rad17 cell cycle checkpoint protein DNA_pol3_delta PF06144.8 gi|305663892|ref|YP_003860180.1| - 6.4e-13 48.5 0.5 5.4e-10 39.0 0.0 2.6 3 0 0 3 3 2 1 DNA polymerase III, delta subunit AAA_14 PF13173.1 gi|305663892|ref|YP_003860180.1| - 9.1e-09 35.2 0.2 2.2e-08 34.0 0.0 1.8 2 0 0 2 2 1 1 AAA domain RuvB_N PF05496.7 gi|305663892|ref|YP_003860180.1| - 1.3e-08 34.1 0.1 1.2e-07 30.9 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|305663892|ref|YP_003860180.1| - 8.1e-08 32.4 0.0 1.1e-05 25.5 0.0 2.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663892|ref|YP_003860180.1| - 3e-07 30.6 0.0 1.6e-06 28.2 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|305663892|ref|YP_003860180.1| - 1.8e-06 27.7 0.0 6.6e-06 25.9 0.0 2.0 1 1 1 2 2 1 1 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|305663892|ref|YP_003860180.1| - 5.2e-06 26.3 0.1 1.5e-05 24.8 0.0 1.8 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|305663892|ref|YP_003860180.1| - 9.2e-06 26.4 0.9 0.00011 23.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|305663892|ref|YP_003860180.1| - 1e-05 24.7 0.0 2e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF815 PF05673.8 gi|305663892|ref|YP_003860180.1| - 1.4e-05 24.1 0.0 3.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.8 gi|305663892|ref|YP_003860180.1| - 2.7e-05 23.0 0.1 0.021 13.5 0.0 2.3 1 1 0 2 2 2 2 TIP49 C-terminus AAA_2 PF07724.9 gi|305663892|ref|YP_003860180.1| - 0.0001 22.2 0.0 0.00028 20.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) NACHT PF05729.7 gi|305663892|ref|YP_003860180.1| - 0.00014 21.5 0.0 0.047 13.3 0.0 2.7 1 1 1 2 2 2 1 NACHT domain IstB_IS21 PF01695.12 gi|305663892|ref|YP_003860180.1| - 0.00018 21.0 0.0 0.00037 19.9 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|305663892|ref|YP_003860180.1| - 0.00036 20.6 0.0 0.0011 19.1 0.0 1.9 1 0 0 1 1 1 1 RNA helicase Bac_DnaA PF00308.13 gi|305663892|ref|YP_003860180.1| - 0.0005 19.7 0.1 0.0022 17.6 0.0 2.1 2 1 0 2 2 1 1 Bacterial dnaA protein NB-ARC PF00931.17 gi|305663892|ref|YP_003860180.1| - 0.0006 18.7 0.0 0.0016 17.3 0.0 1.7 1 0 0 1 1 1 1 NB-ARC domain Miro PF08477.8 gi|305663892|ref|YP_003860180.1| - 0.0013 19.2 0.8 0.02 15.3 0.0 2.7 3 0 0 3 3 2 1 Miro-like protein Parvo_NS1 PF01057.12 gi|305663892|ref|YP_003860180.1| - 0.002 17.0 0.0 0.0054 15.6 0.0 1.7 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|305663892|ref|YP_003860180.1| - 0.0021 17.7 0.2 1.1 8.9 0.0 2.3 1 1 1 2 2 2 1 NTPase AAA_33 PF13671.1 gi|305663892|ref|YP_003860180.1| - 0.0023 17.8 0.0 0.0069 16.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain ABC_tran PF00005.22 gi|305663892|ref|YP_003860180.1| - 0.0043 17.3 0.0 0.029 14.6 0.0 2.2 2 1 0 2 2 1 1 ABC transporter AAA_28 PF13521.1 gi|305663892|ref|YP_003860180.1| - 0.007 16.3 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|305663892|ref|YP_003860180.1| - 0.0074 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA_21 PF13304.1 gi|305663892|ref|YP_003860180.1| - 0.0078 16.2 0.2 0.052 13.5 0.0 2.5 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.1 gi|305663892|ref|YP_003860180.1| - 0.0094 15.5 0.0 0.023 14.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|305663892|ref|YP_003860180.1| - 0.013 14.4 0.0 0.043 12.7 0.0 1.8 2 0 0 2 2 1 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|305663892|ref|YP_003860180.1| - 0.016 15.5 0.1 0.054 13.8 0.0 2.1 2 0 0 2 2 1 0 AAA domain Viral_helicase1 PF01443.13 gi|305663892|ref|YP_003860180.1| - 0.017 14.6 0.0 0.036 13.5 0.0 1.5 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF258 PF03193.11 gi|305663892|ref|YP_003860180.1| - 0.02 14.0 0.0 0.05 12.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|305663892|ref|YP_003860180.1| - 0.023 14.6 0.0 0.071 13.0 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase Plug_translocon PF10559.4 gi|305663892|ref|YP_003860180.1| - 0.029 13.8 0.0 2.7 7.5 0.0 2.7 2 0 0 2 2 2 0 Plug domain of Sec61p KAP_NTPase PF07693.9 gi|305663892|ref|YP_003860180.1| - 0.031 13.2 1.7 0.21 10.5 0.0 2.7 3 1 1 4 4 3 0 KAP family P-loop domain AAA_29 PF13555.1 gi|305663892|ref|YP_003860180.1| - 0.033 13.6 0.0 0.078 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|305663892|ref|YP_003860180.1| - 0.041 13.0 0.0 0.075 12.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|305663892|ref|YP_003860180.1| - 0.049 13.1 0.7 0.11 12.0 0.5 2.0 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|305663892|ref|YP_003860180.1| - 0.067 12.5 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain cobW PF02492.14 gi|305663892|ref|YP_003860180.1| - 0.093 12.1 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain CesT PF05932.8 gi|305663892|ref|YP_003860180.1| - 0.11 12.3 0.0 0.28 11.0 0.0 1.6 1 0 0 1 1 1 0 Tir chaperone protein (CesT) family FtsL PF04999.8 gi|305663892|ref|YP_003860180.1| - 0.12 12.1 0.5 1.2 8.9 0.1 2.3 2 0 0 2 2 2 0 Cell division protein FtsL HTH_45 PF14947.1 gi|305663893|ref|YP_003860181.1| - 0.0085 15.8 1.2 0.0085 15.8 0.8 1.9 1 1 1 2 2 2 1 Winged helix-turn-helix Arm_2 PF04826.8 gi|305663893|ref|YP_003860181.1| - 0.018 14.1 0.4 0.019 14.1 0.3 1.2 1 0 0 1 1 1 0 Armadillo-like PEPcase_2 PF14010.1 gi|305663893|ref|YP_003860181.1| - 0.039 12.2 0.4 0.041 12.1 0.3 1.0 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase PuR_N PF09182.5 gi|305663893|ref|YP_003860181.1| - 0.064 12.8 0.1 0.1 12.2 0.1 1.3 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_27 PF13463.1 gi|305663893|ref|YP_003860181.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Cdc6_C PF09079.6 gi|305663894|ref|YP_003860182.1| - 4.7e-21 74.3 1.1 9.8e-21 73.2 0.2 2.1 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|305663894|ref|YP_003860182.1| - 4.7e-12 46.1 0.1 1.5e-10 41.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|305663894|ref|YP_003860182.1| - 3.8e-05 23.7 0.3 0.0035 17.3 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|305663894|ref|YP_003860182.1| - 0.00036 20.7 0.0 0.001 19.2 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|305663894|ref|YP_003860182.1| - 0.0082 15.0 0.0 0.026 13.4 0.0 1.7 1 1 0 1 1 1 1 NB-ARC domain NACHT PF05729.7 gi|305663894|ref|YP_003860182.1| - 0.036 13.7 0.0 0.074 12.7 0.0 1.6 1 0 0 1 1 1 0 NACHT domain PqqD PF05402.7 gi|305663894|ref|YP_003860182.1| - 0.064 13.2 0.1 0.44 10.5 0.0 2.5 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) AAA_17 PF13207.1 gi|305663894|ref|YP_003860182.1| - 0.15 12.9 1.5 1.7 9.4 1.0 2.7 1 1 0 1 1 1 0 AAA domain Proteasome PF00227.21 gi|305663895|ref|YP_003860183.1| - 4.1e-53 179.4 0.0 5.7e-53 179.0 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|305663895|ref|YP_003860183.1| - 6.7e-14 50.8 1.2 1e-13 50.2 0.1 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|305663896|ref|YP_003860184.1| - 4.8e-26 90.3 0.1 8.1e-26 89.6 0.1 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|305663896|ref|YP_003860184.1| - 8.2e-21 73.9 2.7 1.3e-20 73.3 1.9 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF1949 PF09186.6 gi|305663896|ref|YP_003860184.1| - 0.029 13.9 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|305663896|ref|YP_003860184.1| - 0.056 13.3 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Elongation factor G C-terminus KH_1 PF00013.24 gi|305663897|ref|YP_003860185.1| - 2.2e-05 24.0 0.3 7e-05 22.3 0.2 1.8 1 0 0 1 1 1 1 KH domain KH_3 PF13014.1 gi|305663897|ref|YP_003860185.1| - 0.0048 16.5 0.7 0.0095 15.5 0.1 1.9 2 0 0 2 2 2 1 KH domain S1 PF00575.18 gi|305663897|ref|YP_003860185.1| - 0.021 14.9 0.0 0.063 13.3 0.0 1.9 1 0 0 1 1 1 0 S1 RNA binding domain Ribosomal_S28e PF01200.13 gi|305663897|ref|YP_003860185.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.7 1 0 0 1 1 1 0 Ribosomal protein S28e RNase_PH PF01138.16 gi|305663898|ref|YP_003860186.1| - 2.2e-35 121.8 0.1 2.8e-35 121.5 0.1 1.1 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|305663898|ref|YP_003860186.1| - 1.9e-15 56.5 0.4 3.2e-15 55.8 0.3 1.4 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 EF-hand_8 PF13833.1 gi|305663898|ref|YP_003860186.1| - 0.027 14.0 0.2 0.22 11.1 0.0 2.2 2 0 0 2 2 2 0 EF-hand domain pair RNase_PH PF01138.16 gi|305663899|ref|YP_003860187.1| - 1.3e-28 99.8 0.0 2.2e-28 99.2 0.0 1.3 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.10 gi|305663899|ref|YP_003860187.1| - 5e-13 48.7 0.8 1.1e-12 47.6 0.5 1.6 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 FtsA PF14450.1 gi|305663899|ref|YP_003860187.1| - 0.12 12.2 1.6 0.25 11.1 1.1 1.5 1 0 0 1 1 1 0 Cell division protein FtsA Ribosomal_L37ae PF01780.14 gi|305663900|ref|YP_003860188.1| - 1.9e-29 101.3 5.0 2e-29 101.2 3.5 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DUF1610 PF07754.6 gi|305663900|ref|YP_003860188.1| - 0.00027 20.9 5.3 0.0014 18.6 0.2 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|305663900|ref|YP_003860188.1| - 0.0015 18.2 2.9 0.0023 17.7 2.1 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain CpXC PF14353.1 gi|305663900|ref|YP_003860188.1| - 0.0015 18.4 2.4 0.0051 16.7 0.0 2.0 1 1 1 2 2 2 1 CpXC protein zf-ribbon_3 PF13248.1 gi|305663900|ref|YP_003860188.1| - 0.0022 17.1 2.5 0.082 12.1 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-ISL3 PF14690.1 gi|305663900|ref|YP_003860188.1| - 0.0035 17.3 1.0 0.2 11.7 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HIT PF04438.11 gi|305663900|ref|YP_003860188.1| - 0.0036 16.9 4.3 1.3 8.7 0.0 2.2 2 0 0 2 2 2 2 HIT zinc finger zf-H2C2_2 PF13465.1 gi|305663900|ref|YP_003860188.1| - 0.0056 16.9 1.1 0.6 10.5 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|305663900|ref|YP_003860188.1| - 0.0056 16.2 0.3 0.0076 15.8 0.2 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|305663900|ref|YP_003860188.1| - 0.01 15.7 1.0 0.021 14.8 0.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|305663900|ref|YP_003860188.1| - 0.012 14.8 2.7 0.11 11.8 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|305663900|ref|YP_003860188.1| - 0.014 14.9 1.9 0.33 10.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|305663900|ref|YP_003860188.1| - 0.014 15.0 1.9 0.5 10.0 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-Di19 PF05605.7 gi|305663900|ref|YP_003860188.1| - 0.015 15.4 0.7 0.086 12.9 0.1 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Unstab_antitox PF09720.5 gi|305663900|ref|YP_003860188.1| - 0.02 14.6 0.1 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Putative addiction module component A2L_zn_ribbon PF08792.5 gi|305663900|ref|YP_003860188.1| - 0.025 14.0 2.2 0.52 9.8 0.0 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Ribosomal_S27e PF01667.12 gi|305663900|ref|YP_003860188.1| - 0.026 14.0 0.8 0.047 13.2 0.6 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 zf-C4_Topoisom PF01396.14 gi|305663900|ref|YP_003860188.1| - 0.029 13.8 4.3 0.53 9.8 0.0 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2296 PF10058.4 gi|305663900|ref|YP_003860188.1| - 0.038 13.7 3.2 2.7 7.8 0.2 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF4379 PF14311.1 gi|305663900|ref|YP_003860188.1| - 0.046 13.5 6.3 1.9 8.3 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) zf-tcix PF14952.1 gi|305663900|ref|YP_003860188.1| - 0.051 12.9 0.5 0.051 12.9 0.3 2.2 1 1 1 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Rubredoxin PF00301.15 gi|305663900|ref|YP_003860188.1| - 0.053 13.4 2.9 3.1 7.7 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.14 gi|305663900|ref|YP_003860188.1| - 0.062 12.9 0.1 0.07 12.8 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|305663900|ref|YP_003860188.1| - 0.065 12.9 0.8 4.9 6.9 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-MIZ PF02891.15 gi|305663900|ref|YP_003860188.1| - 0.079 12.4 1.9 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 MIZ/SP-RING zinc finger UPF0547 PF10571.4 gi|305663900|ref|YP_003860188.1| - 0.082 12.6 2.1 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2_4 PF13894.1 gi|305663900|ref|YP_003860188.1| - 0.09 13.1 1.8 12 6.4 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-RING_3 PF14369.1 gi|305663900|ref|YP_003860188.1| - 0.098 12.6 0.3 2.5 8.1 0.0 2.1 2 0 0 2 2 2 0 zinc-finger zf-RanBP PF00641.13 gi|305663900|ref|YP_003860188.1| - 0.12 11.5 0.4 0.12 11.5 0.3 2.0 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others Elf1 PF05129.8 gi|305663900|ref|YP_003860188.1| - 0.13 11.9 1.2 0.42 10.3 0.9 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.1 gi|305663900|ref|YP_003860188.1| - 0.13 12.5 1.1 0.32 11.3 0.8 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2082 PF09855.4 gi|305663900|ref|YP_003860188.1| - 0.16 11.8 1.7 6.5 6.6 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Endonuclease_7 PF02945.10 gi|305663900|ref|YP_003860188.1| - 0.26 11.0 1.2 2.5 7.8 0.9 2.0 1 1 0 1 1 1 0 Recombination endonuclease VII DZR PF12773.2 gi|305663900|ref|YP_003860188.1| - 0.38 10.6 2.3 2.1 8.2 1.6 1.9 1 1 1 2 2 2 0 Double zinc ribbon TFIIS_C PF01096.13 gi|305663900|ref|YP_003860188.1| - 0.41 10.3 3.6 6.5 6.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-C2H2 PF00096.21 gi|305663900|ref|YP_003860188.1| - 0.6 10.5 4.2 3.4 8.1 0.3 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type zinc_ribbon_2 PF13240.1 gi|305663900|ref|YP_003860188.1| - 0.63 9.5 8.2 0.78 9.3 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Acetone_carb_G PF08882.6 gi|305663900|ref|YP_003860188.1| - 0.71 9.9 5.2 28 4.7 3.6 2.3 1 1 0 1 1 1 0 Acetone carboxylase gamma subunit Cys_rich_CPXG PF14255.1 gi|305663900|ref|YP_003860188.1| - 1.2 8.9 3.4 0.5 10.2 0.4 1.7 2 0 0 2 2 2 0 Cysteine-rich CPXCG DUF3797 PF12677.2 gi|305663900|ref|YP_003860188.1| - 1.4 8.6 5.4 0.89 9.2 0.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) PHD PF00628.24 gi|305663900|ref|YP_003860188.1| - 4.9 6.9 5.9 12 5.6 0.3 2.1 1 1 1 2 2 2 0 PHD-finger Brix PF04427.13 gi|305663901|ref|YP_003860189.1| - 4.9e-10 39.3 0.6 5.5e-10 39.2 0.4 1.1 1 0 0 1 1 1 1 Brix domain Pcc1 PF09341.5 gi|305663902|ref|YP_003860190.1| - 2.3e-06 27.5 0.1 3.7e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Transcription factor Pcc1 Prefoldin_2 PF01920.15 gi|305663903|ref|YP_003860191.1| - 2.7e-23 81.7 13.1 3e-23 81.6 9.1 1.0 1 0 0 1 1 1 1 Prefoldin subunit CENP-F_leu_zip PF10473.4 gi|305663903|ref|YP_003860191.1| - 0.012 15.4 9.7 0.015 15.1 0.4 2.1 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlgN PF05130.7 gi|305663903|ref|YP_003860191.1| - 0.037 14.2 0.4 0.037 14.2 0.3 2.4 1 1 0 1 1 1 0 FlgN protein TPR_17 PF13431.1 gi|305663903|ref|YP_003860191.1| - 0.04 14.1 0.1 2.3 8.6 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|305663903|ref|YP_003860191.1| - 0.27 11.5 4.1 13 6.2 0.0 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF4414 PF14377.1 gi|305663903|ref|YP_003860191.1| - 0.35 10.7 3.9 0.24 11.3 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4414) Cortex-I_coil PF09304.5 gi|305663903|ref|YP_003860191.1| - 0.58 10.2 14.4 0.7 9.9 3.1 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil CCDC144C PF14915.1 gi|305663903|ref|YP_003860191.1| - 0.92 8.3 15.5 20 3.9 10.9 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region Prefoldin PF02996.12 gi|305663903|ref|YP_003860191.1| - 2.5 7.7 10.0 2.7 7.6 1.9 2.3 1 1 1 2 2 2 0 Prefoldin subunit Adeno_PIX PF03955.9 gi|305663903|ref|YP_003860191.1| - 2.7 8.5 5.2 11 6.6 0.5 2.1 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) DUF972 PF06156.8 gi|305663903|ref|YP_003860191.1| - 2.9 8.2 7.8 3.9 7.8 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF972) Gon7 PF08738.5 gi|305663903|ref|YP_003860191.1| - 7.8 6.5 7.3 2.3 8.2 1.0 2.2 2 1 0 2 2 2 0 Gon7 family APG6 PF04111.7 gi|305663903|ref|YP_003860191.1| - 8.4 5.3 11.0 19 4.1 7.2 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 DHH PF01368.15 gi|305663905|ref|YP_003860193.1| - 7.5e-17 61.3 2.8 1.1e-16 60.7 2.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|305663905|ref|YP_003860193.1| - 3.3e-07 29.9 0.0 6.1e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 DHHA1 domain RraB PF06877.6 gi|305663905|ref|YP_003860193.1| - 0.11 13.1 0.1 11 6.7 0.0 2.7 3 0 0 3 3 3 0 Regulator of ribonuclease activity B ERCC4 PF02732.10 gi|305663906|ref|YP_003860194.1| - 7.4e-26 90.6 0.1 1.5e-25 89.6 0.1 1.5 1 0 0 1 1 1 1 ERCC4 domain HHH_5 PF14520.1 gi|305663906|ref|YP_003860194.1| - 3.4e-08 33.5 0.0 9.3e-07 28.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|305663906|ref|YP_003860194.1| - 1.1e-06 28.4 0.0 4.7e-06 26.4 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|305663906|ref|YP_003860194.1| - 8e-06 25.2 0.1 0.00063 19.3 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix motif Transposase_20 PF02371.11 gi|305663906|ref|YP_003860194.1| - 0.0013 18.8 0.0 0.044 13.8 0.0 2.9 3 0 0 3 3 3 1 Transposase IS116/IS110/IS902 family HHH_3 PF12836.2 gi|305663906|ref|YP_003860194.1| - 0.0014 18.5 0.0 0.069 13.0 0.0 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif RNA_pol_A_CTD PF03118.10 gi|305663906|ref|YP_003860194.1| - 0.02 14.2 0.1 0.19 11.1 0.0 2.4 2 0 0 2 2 2 0 Bacterial RNA polymerase, alpha chain C terminal domain HHH_8 PF14716.1 gi|305663906|ref|YP_003860194.1| - 0.042 14.0 0.0 4.9 7.4 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix domain 5_3_exonuc PF01367.15 gi|305663906|ref|YP_003860194.1| - 0.065 13.4 0.2 2.2 8.5 0.1 2.7 1 1 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold GTP_EFTU PF00009.22 gi|305663907|ref|YP_003860195.1| - 3.3e-58 196.2 0.3 4.7e-58 195.7 0.2 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|305663907|ref|YP_003860195.1| - 4.1e-33 113.4 0.0 4.3e-32 110.2 0.0 2.7 3 0 0 3 3 3 1 Elongation factor G, domain IV EFG_II PF14492.1 gi|305663907|ref|YP_003860195.1| - 1e-24 86.1 0.4 2.1e-24 85.1 0.3 1.6 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.19 gi|305663907|ref|YP_003860195.1| - 1.3e-21 76.2 0.0 5.3e-21 74.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.20 gi|305663907|ref|YP_003860195.1| - 1.6e-11 44.1 0.1 6.5e-11 42.1 0.0 2.2 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|305663907|ref|YP_003860195.1| - 6.7e-05 22.8 0.1 0.00015 21.6 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase HypD PF01924.11 gi|305663908|ref|YP_003860196.1| - 2.2e-124 414.7 0.0 2.6e-124 414.5 0.0 1.0 1 0 0 1 1 1 1 Hydrogenase formation hypA family ADK PF00406.17 gi|305663909|ref|YP_003860197.1| - 2.2e-50 170.4 0.0 2.8e-50 170.0 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|305663909|ref|YP_003860197.1| - 1.1e-17 63.4 1.1 2.1e-17 62.4 0.7 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|305663909|ref|YP_003860197.1| - 2.2e-11 44.6 0.2 3.8e-11 43.8 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|305663909|ref|YP_003860197.1| - 3.4e-06 26.9 0.0 9.1e-06 25.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663909|ref|YP_003860197.1| - 3.5e-05 24.1 0.0 0.0001 22.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain A2L_zn_ribbon PF08792.5 gi|305663909|ref|YP_003860197.1| - 4.2e-05 22.8 0.3 0.47 9.9 0.0 3.0 3 0 0 3 3 2 2 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|305663909|ref|YP_003860197.1| - 0.0002 21.2 1.6 0.064 13.2 0.0 3.1 3 0 0 3 3 3 1 zinc-finger binding domain of transposase IS66 Zn_ribbon_recom PF13408.1 gi|305663909|ref|YP_003860197.1| - 0.00073 19.7 0.5 0.19 11.9 0.3 2.6 1 1 1 2 2 2 1 Recombinase zinc beta ribbon domain Prok-RING_1 PF14446.1 gi|305663909|ref|YP_003860197.1| - 0.00088 18.9 0.9 0.084 12.6 0.0 2.3 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 Trm112p PF03966.11 gi|305663909|ref|YP_003860197.1| - 0.0048 17.2 0.0 0.011 16.0 0.0 1.6 1 0 0 1 1 1 1 Trm112p-like protein AAA_28 PF13521.1 gi|305663909|ref|YP_003860197.1| - 0.0076 16.2 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|305663909|ref|YP_003860197.1| - 0.0078 16.4 0.1 0.023 14.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|305663909|ref|YP_003860197.1| - 0.022 13.7 0.0 0.037 13.0 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus zf-ribbon_3 PF13248.1 gi|305663909|ref|YP_003860197.1| - 0.024 13.8 0.3 0.3 10.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|305663909|ref|YP_003860197.1| - 0.036 13.7 0.0 0.082 12.5 0.0 1.6 2 0 0 2 2 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|305663909|ref|YP_003860197.1| - 0.045 13.4 1.0 1.6 8.4 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|305663909|ref|YP_003860197.1| - 0.05 13.3 0.4 0.05 13.3 0.3 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain OrfB_Zn_ribbon PF07282.6 gi|305663909|ref|YP_003860197.1| - 0.058 13.0 0.1 0.15 11.7 0.0 1.7 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|305663909|ref|YP_003860197.1| - 0.072 12.9 0.2 0.15 11.9 0.2 1.5 1 1 0 1 1 1 0 Double zinc ribbon GFA PF04828.9 gi|305663909|ref|YP_003860197.1| - 0.075 12.9 0.2 0.95 9.4 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Gin PF10764.4 gi|305663909|ref|YP_003860197.1| - 0.08 12.6 0.7 5.3 6.8 0.0 2.9 3 0 0 3 3 2 0 Inhibitor of sigma-G Gin zf-C4_Topoisom PF01396.14 gi|305663909|ref|YP_003860197.1| - 0.11 12.0 0.5 5.2 6.6 0.0 2.5 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.7 gi|305663909|ref|YP_003860197.1| - 0.11 11.7 1.8 0.75 9.1 1.3 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding Ogr_Delta PF04606.7 gi|305663909|ref|YP_003860197.1| - 0.24 11.1 0.8 3.2 7.4 0.1 2.3 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger PhnA_Zn_Ribbon PF08274.7 gi|305663909|ref|YP_003860197.1| - 0.74 9.6 2.9 7.1 6.5 2.0 2.3 1 1 1 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|305663909|ref|YP_003860197.1| - 0.89 9.4 3.4 2.3 8.0 2.3 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Prim_Zn_Ribbon PF08273.7 gi|305663909|ref|YP_003860197.1| - 0.98 9.5 3.1 3.5 7.7 2.2 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase DUF1610 PF07754.6 gi|305663909|ref|YP_003860197.1| - 2.9 8.0 5.2 2.3 8.3 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) KaiC PF06745.8 gi|305663910|ref|YP_003860198.1| - 8.4e-47 159.1 0.4 1.3e-45 155.2 0.3 2.0 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|305663910|ref|YP_003860198.1| - 1.3e-10 41.0 0.2 2.4e-09 36.9 0.1 2.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|305663910|ref|YP_003860198.1| - 2.5e-08 33.1 0.0 5.9e-08 31.9 0.0 1.6 2 0 0 2 2 2 1 Rad51 RecA PF00154.16 gi|305663910|ref|YP_003860198.1| - 8e-06 25.1 0.1 1.6e-05 24.1 0.0 1.5 2 0 0 2 2 2 1 recA bacterial DNA recombination protein GvpD PF07088.6 gi|305663910|ref|YP_003860198.1| - 1.6e-05 23.4 0.0 0.0017 16.7 0.0 2.5 1 1 1 2 2 2 1 GvpD gas vesicle protein IstB_IS21 PF01695.12 gi|305663910|ref|YP_003860198.1| - 1.9e-05 24.1 0.0 6.1e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 IstB-like ATP binding protein PAXNEB PF05625.6 gi|305663910|ref|YP_003860198.1| - 6.5e-05 21.9 0.0 0.00045 19.1 0.0 1.9 2 0 0 2 2 2 1 PAXNEB protein AAA_10 PF12846.2 gi|305663910|ref|YP_003860198.1| - 0.0003 20.3 0.0 0.00054 19.4 0.0 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_18 PF13238.1 gi|305663910|ref|YP_003860198.1| - 0.00051 20.3 0.0 0.0026 18.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663910|ref|YP_003860198.1| - 0.00076 19.5 0.0 0.0014 18.6 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain DUF2075 PF09848.4 gi|305663910|ref|YP_003860198.1| - 0.00097 18.2 0.0 0.0016 17.4 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|305663910|ref|YP_003860198.1| - 0.0022 17.7 0.0 0.0055 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_28 PF13521.1 gi|305663910|ref|YP_003860198.1| - 0.0028 17.6 0.0 0.013 15.4 0.0 2.1 2 1 1 3 3 3 1 AAA domain DnaB_C PF03796.10 gi|305663910|ref|YP_003860198.1| - 0.0036 16.2 0.0 0.1 11.4 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain AAA_22 PF13401.1 gi|305663910|ref|YP_003860198.1| - 0.0062 16.6 0.0 0.019 15.1 0.0 1.8 2 0 0 2 2 1 1 AAA domain PPV_E1_C PF00519.12 gi|305663910|ref|YP_003860198.1| - 0.0065 15.1 0.0 0.012 14.3 0.0 1.3 1 0 0 1 1 1 1 Papillomavirus helicase ABC_tran PF00005.22 gi|305663910|ref|YP_003860198.1| - 0.0069 16.6 0.0 0.0098 16.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter Sigma54_activat PF00158.21 gi|305663910|ref|YP_003860198.1| - 0.011 15.2 0.0 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|305663910|ref|YP_003860198.1| - 0.019 15.0 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-54 interaction domain DAP3 PF10236.4 gi|305663910|ref|YP_003860198.1| - 0.026 13.4 0.0 0.05 12.5 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_5 PF07728.9 gi|305663910|ref|YP_003860198.1| - 0.037 13.7 0.0 0.08 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|305663910|ref|YP_003860198.1| - 0.04 13.4 0.1 0.27 10.7 0.0 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|305663910|ref|YP_003860198.1| - 0.063 13.4 0.0 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 RNA helicase ArgK PF03308.11 gi|305663910|ref|YP_003860198.1| - 0.087 11.5 0.3 0.3 9.8 0.0 1.8 2 0 0 2 2 2 0 ArgK protein AAA_30 PF13604.1 gi|305663910|ref|YP_003860198.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305663910|ref|YP_003860198.1| - 0.092 12.9 0.0 0.22 11.7 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|305663910|ref|YP_003860198.1| - 0.1 12.2 0.0 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 NACHT domain MMR_HSR1 PF01926.18 gi|305663910|ref|YP_003860198.1| - 0.12 12.2 0.0 0.35 10.8 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_17 PF13207.1 gi|305663910|ref|YP_003860198.1| - 0.14 13.0 0.2 0.32 11.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF2070 PF09843.4 gi|305663913|ref|YP_003860201.1| - 2e-23 82.7 0.0 3.3e-23 82.0 0.0 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) YecR PF13992.1 gi|305663913|ref|YP_003860201.1| - 0.18 12.0 0.0 8.7 6.5 0.0 2.8 3 0 0 3 3 3 0 YecR-like lipoprotein PRC PF05239.11 gi|305663914|ref|YP_003860202.1| - 0.00075 19.3 0.6 0.0015 18.3 0.4 1.5 1 0 0 1 1 1 1 PRC-barrel domain GvpG PF05120.7 gi|305663914|ref|YP_003860202.1| - 0.029 14.1 2.3 3.4 7.5 0.1 2.7 2 1 1 3 3 3 0 Gas vesicle protein G FH2 PF02181.18 gi|305663914|ref|YP_003860202.1| - 0.046 12.5 5.0 0.019 13.8 1.3 1.7 1 1 1 2 2 2 0 Formin Homology 2 Domain DUF883 PF05957.8 gi|305663914|ref|YP_003860202.1| - 0.088 13.2 0.6 0.088 13.2 0.4 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF458 PF04308.7 gi|305663914|ref|YP_003860202.1| - 0.11 12.2 1.6 0.12 12.1 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF458) Fib_alpha PF08702.5 gi|305663914|ref|YP_003860202.1| - 0.27 11.3 4.7 0.46 10.6 0.6 2.3 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family SYCE1 PF15233.1 gi|305663914|ref|YP_003860202.1| - 0.51 10.2 9.8 1.3 9.0 6.8 1.7 1 1 0 1 1 1 0 Synaptonemal complex central element protein 1 Seryl_tRNA_N PF02403.17 gi|305663914|ref|YP_003860202.1| - 3.3 7.7 8.8 2.5 8.1 1.9 2.2 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TrmB PF01978.14 gi|305663915|ref|YP_003860203.1| - 1.4e-05 24.7 0.0 5.5e-05 22.7 0.0 2.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|305663915|ref|YP_003860203.1| - 0.00055 19.2 0.1 0.0021 17.4 0.1 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DDRGK PF09756.4 gi|305663915|ref|YP_003860203.1| - 0.002 17.5 6.0 0.046 13.1 0.0 3.1 3 1 0 3 3 3 2 DDRGK domain CHAD PF05235.9 gi|305663915|ref|YP_003860203.1| - 0.0038 16.8 0.1 0.0079 15.8 0.0 1.5 2 0 0 2 2 2 1 CHAD domain LexA_DNA_bind PF01726.11 gi|305663915|ref|YP_003860203.1| - 0.012 15.1 0.0 0.044 13.3 0.0 2.0 1 0 0 1 1 1 0 LexA DNA binding domain MarR PF01047.17 gi|305663915|ref|YP_003860203.1| - 0.019 14.6 0.0 0.076 12.7 0.0 2.1 1 0 0 1 1 1 0 MarR family HTH_10 PF04967.7 gi|305663915|ref|YP_003860203.1| - 0.037 13.5 0.0 0.16 11.5 0.0 2.1 1 0 0 1 1 1 0 HTH DNA binding domain B-block_TFIIIC PF04182.7 gi|305663915|ref|YP_003860203.1| - 0.066 13.0 0.1 0.17 11.7 0.1 1.7 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC GntR PF00392.16 gi|305663915|ref|YP_003860203.1| - 0.067 12.6 0.0 0.2 11.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|305663915|ref|YP_003860203.1| - 0.067 13.3 0.4 0.44 10.7 0.0 2.6 3 1 1 4 4 4 0 Transcriptional regulator RPA_C PF08784.6 gi|305663915|ref|YP_003860203.1| - 0.067 13.6 0.1 2.3 8.6 0.0 2.6 2 0 0 2 2 2 0 Replication protein A C terminal DUF3512 PF12024.3 gi|305663915|ref|YP_003860203.1| - 0.078 12.2 0.2 0.19 10.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3512) SpoIIID PF12116.3 gi|305663915|ref|YP_003860203.1| - 0.11 12.4 2.5 0.68 9.9 0.0 2.7 3 0 0 3 3 3 0 Stage III sporulation protein D SgrR_N PF12793.2 gi|305663915|ref|YP_003860203.1| - 0.12 12.3 0.0 1.1 9.2 0.0 2.5 2 1 0 3 3 3 0 Sugar transport-related sRNA regulator N-term Mga PF05043.8 gi|305663915|ref|YP_003860203.1| - 0.31 11.3 2.9 7 7.0 0.0 3.1 3 0 0 3 3 3 0 Mga helix-turn-helix domain Enkurin PF13864.1 gi|305663915|ref|YP_003860203.1| - 0.42 10.8 3.8 0.45 10.7 0.4 2.3 2 0 0 2 2 2 0 Calmodulin-binding Snf7 PF03357.16 gi|305663915|ref|YP_003860203.1| - 1.8 7.9 10.3 12 5.1 6.6 2.2 1 1 0 1 1 1 0 Snf7 AAA PF00004.24 gi|305663916|ref|YP_003860204.1| - 8.3e-36 123.1 0.0 3.2e-35 121.1 0.0 2.0 3 0 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.13 gi|305663916|ref|YP_003860204.1| - 3.8e-09 36.2 7.1 9.6e-09 35.0 2.9 3.0 3 0 0 3 3 3 1 MIT (microtubule interacting and transport) domain AAA_22 PF13401.1 gi|305663916|ref|YP_003860204.1| - 3.3e-07 30.5 0.1 9.9e-06 25.7 0.0 2.9 2 1 0 2 2 2 1 AAA domain Vps4_C PF09336.5 gi|305663916|ref|YP_003860204.1| - 7.8e-06 25.6 0.0 1.9e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Vps4 C terminal oligomerisation domain AAA_14 PF13173.1 gi|305663916|ref|YP_003860204.1| - 1.5e-05 24.9 0.2 0.00014 21.7 0.0 2.6 2 2 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|305663916|ref|YP_003860204.1| - 1.6e-05 24.9 0.0 0.0015 18.5 0.0 2.7 2 1 1 3 3 2 1 AAA ATPase domain RuvB_N PF05496.7 gi|305663916|ref|YP_003860204.1| - 4.2e-05 22.7 0.0 9.7e-05 21.5 0.0 1.7 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus TIP49 PF06068.8 gi|305663916|ref|YP_003860204.1| - 5e-05 22.2 0.0 8.6e-05 21.4 0.0 1.5 1 0 0 1 1 1 1 TIP49 C-terminus AAA_2 PF07724.9 gi|305663916|ref|YP_003860204.1| - 5.7e-05 23.1 0.1 0.00016 21.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|305663916|ref|YP_003860204.1| - 8.3e-05 22.0 0.2 0.015 14.7 0.1 2.3 1 1 1 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|305663916|ref|YP_003860204.1| - 0.0001 22.0 2.7 0.16 11.6 0.0 3.4 2 1 1 3 3 3 2 Archaeal ATPase AAA_17 PF13207.1 gi|305663916|ref|YP_003860204.1| - 0.00011 22.9 0.9 0.00032 21.5 0.1 2.2 2 1 0 2 2 1 1 AAA domain AAA_10 PF12846.2 gi|305663916|ref|YP_003860204.1| - 0.00016 21.2 0.0 0.27 10.6 0.0 3.2 3 0 0 3 3 3 1 AAA-like domain Zeta_toxin PF06414.7 gi|305663916|ref|YP_003860204.1| - 0.00021 20.4 0.0 0.00048 19.2 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin RNA_helicase PF00910.17 gi|305663916|ref|YP_003860204.1| - 0.0015 18.7 0.0 0.0068 16.5 0.0 2.2 2 0 0 2 2 1 1 RNA helicase Mg_chelatase PF01078.16 gi|305663916|ref|YP_003860204.1| - 0.0019 17.4 0.0 0.0037 16.4 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|305663916|ref|YP_003860204.1| - 0.0033 17.1 0.1 0.011 15.4 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NACHT PF05729.7 gi|305663916|ref|YP_003860204.1| - 0.0042 16.7 0.0 0.012 15.3 0.0 1.7 2 0 0 2 2 1 1 NACHT domain AAA_24 PF13479.1 gi|305663916|ref|YP_003860204.1| - 0.0043 16.6 0.0 0.018 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|305663916|ref|YP_003860204.1| - 0.0055 16.1 0.1 0.011 15.0 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|305663916|ref|YP_003860204.1| - 0.0076 16.1 0.0 0.017 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305663916|ref|YP_003860204.1| - 0.0097 16.2 2.0 0.024 14.9 0.1 2.7 2 2 0 2 2 2 1 AAA domain TPR_11 PF13414.1 gi|305663916|ref|YP_003860204.1| - 0.01 15.4 3.3 0.083 12.5 1.2 2.5 2 0 0 2 2 2 0 TPR repeat AAA_19 PF13245.1 gi|305663916|ref|YP_003860204.1| - 0.01 15.5 0.0 0.037 13.7 0.0 1.9 2 0 0 2 2 1 0 Part of AAA domain AAA_28 PF13521.1 gi|305663916|ref|YP_003860204.1| - 0.029 14.3 0.0 0.082 12.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|305663916|ref|YP_003860204.1| - 0.045 12.5 0.0 0.085 11.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain ABC_tran PF00005.22 gi|305663916|ref|YP_003860204.1| - 0.053 13.8 0.0 0.12 12.7 0.0 1.8 1 1 0 1 1 1 0 ABC transporter DUF815 PF05673.8 gi|305663916|ref|YP_003860204.1| - 0.07 12.0 0.0 0.15 10.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) TPR_12 PF13424.1 gi|305663916|ref|YP_003860204.1| - 0.073 13.0 0.6 0.18 11.7 0.4 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat ATP-synt_ab PF00006.20 gi|305663916|ref|YP_003860204.1| - 0.092 12.2 0.0 0.21 11.0 0.0 1.6 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain TPR_2 PF07719.12 gi|305663916|ref|YP_003860204.1| - 0.11 12.5 5.1 0.85 9.6 0.8 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat AAA_3 PF07726.6 gi|305663916|ref|YP_003860204.1| - 0.11 12.1 0.0 0.21 11.1 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Parvo_NS1 PF01057.12 gi|305663916|ref|YP_003860204.1| - 0.11 11.3 0.0 0.21 10.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CPT PF07931.7 gi|305663916|ref|YP_003860204.1| - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.13 gi|305663916|ref|YP_003860204.1| - 0.17 11.3 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CBS PF00571.23 gi|305663917|ref|YP_003860205.1| - 1.2e-29 101.7 8.3 5.1e-15 54.9 0.5 2.1 2 0 0 2 2 2 2 CBS domain SIS_2 PF13580.1 gi|305663917|ref|YP_003860205.1| - 0.092 12.4 0.2 0.96 9.1 0.0 2.0 1 1 1 2 2 2 0 SIS domain FbpA PF05833.6 gi|305663918|ref|YP_003860206.1| - 7.6e-32 110.4 9.3 1.2e-31 109.8 6.5 1.3 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|305663918|ref|YP_003860206.1| - 3.9e-27 93.9 0.0 9e-27 92.8 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF814) CENP-F_leu_zip PF10473.4 gi|305663918|ref|YP_003860206.1| - 0.014 15.2 10.6 0.48 10.2 0.3 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|305663918|ref|YP_003860206.1| - 0.015 15.1 3.5 0.22 11.3 0.0 2.6 3 0 0 3 3 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2203 PF09969.4 gi|305663918|ref|YP_003860206.1| - 0.015 15.4 2.7 1.5 9.0 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) DUF3121 PF11319.3 gi|305663918|ref|YP_003860206.1| - 0.016 14.6 0.1 0.046 13.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3121) BLOC1_2 PF10046.4 gi|305663918|ref|YP_003860206.1| - 0.04 14.0 15.7 1.8 8.7 0.3 3.8 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TBPIP PF07106.8 gi|305663918|ref|YP_003860206.1| - 0.077 12.5 11.6 0.075 12.5 0.5 2.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|305663918|ref|YP_003860206.1| - 0.083 11.5 14.1 0.023 13.3 0.4 2.3 1 1 1 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|305663918|ref|YP_003860206.1| - 0.14 12.1 9.7 4.3 7.4 2.7 2.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Matrilin_ccoil PF10393.4 gi|305663918|ref|YP_003860206.1| - 0.17 11.2 3.2 10 5.5 0.0 3.3 3 0 0 3 3 3 0 Trimeric coiled-coil oligomerisation domain of matrilin DUF869 PF05911.6 gi|305663918|ref|YP_003860206.1| - 0.22 9.7 5.2 0.4 8.8 3.6 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF869) Laminin_II PF06009.7 gi|305663918|ref|YP_003860206.1| - 0.24 11.1 4.9 1.1 9.0 0.1 2.5 2 0 0 2 2 2 0 Laminin Domain II IncA PF04156.9 gi|305663918|ref|YP_003860206.1| - 0.24 10.9 10.5 0.073 12.6 0.8 2.2 2 0 0 2 2 2 0 IncA protein Syntaxin-6_N PF09177.6 gi|305663918|ref|YP_003860206.1| - 0.31 11.4 4.6 4.4 7.7 0.3 2.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal PspA_IM30 PF04012.7 gi|305663918|ref|YP_003860206.1| - 0.37 10.1 7.6 0.82 8.9 0.1 2.1 2 0 0 2 2 2 0 PspA/IM30 family AAA_27 PF13514.1 gi|305663918|ref|YP_003860206.1| - 0.48 8.0 2.2 1.3 6.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain DivIC PF04977.10 gi|305663918|ref|YP_003860206.1| - 0.75 9.3 12.5 2.3 7.7 3.5 2.6 2 0 0 2 2 2 0 Septum formation initiator Med9 PF07544.8 gi|305663918|ref|YP_003860206.1| - 0.97 9.2 7.3 0.32 10.7 0.2 2.9 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 FlaC_arch PF05377.6 gi|305663918|ref|YP_003860206.1| - 1.2 9.0 13.9 1.2 9.1 1.2 3.7 3 1 1 4 4 3 0 Flagella accessory protein C (FlaC) CALCOCO1 PF07888.6 gi|305663918|ref|YP_003860206.1| - 1.6 6.9 6.3 3.9 5.6 0.2 2.1 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF972 PF06156.8 gi|305663918|ref|YP_003860206.1| - 3 8.2 10.7 6.3 7.2 2.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Prefoldin PF02996.12 gi|305663918|ref|YP_003860206.1| - 3.7 7.2 10.4 2.7 7.6 0.3 2.9 2 0 0 2 2 2 0 Prefoldin subunit Med4 PF10018.4 gi|305663918|ref|YP_003860206.1| - 6.5 6.1 10.8 0.68 9.3 1.1 2.3 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 RNA_Me_trans PF04252.8 gi|305663920|ref|YP_003860208.1| - 7.6e-41 139.6 0.2 8.8e-41 139.4 0.1 1.0 1 0 0 1 1 1 1 Predicted SAM-dependent RNA methyltransferase tRNA_m1G_MT PF01746.16 gi|305663920|ref|YP_003860208.1| - 2.7e-06 27.0 0.0 3.6e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 tRNA (Guanine-1)-methyltransferase Flavi_DEAD PF07652.9 gi|305663920|ref|YP_003860208.1| - 0.0023 17.7 0.0 0.005 16.5 0.0 1.5 1 0 0 1 1 1 1 Flavivirus DEAD domain LSM PF01423.17 gi|305663921|ref|YP_003860209.1| - 2.4e-15 55.8 0.3 2.9e-15 55.5 0.2 1.1 1 0 0 1 1 1 1 LSM domain AdoMet_Synthase PF01941.14 gi|305663923|ref|YP_003860211.1| - 2.5e-170 566.2 7.1 2.8e-170 566.0 5.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|305663923|ref|YP_003860211.1| - 0.16 12.1 1.3 0.75 10.0 0.0 2.6 3 0 0 3 3 3 0 S-adenosylmethionine synthetase, N-terminal domain DUF460 PF04312.8 gi|305663924|ref|YP_003860212.1| - 9.5e-43 145.0 0.2 1.8e-42 144.1 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Hpr_kinase_N PF02603.11 gi|305663924|ref|YP_003860212.1| - 0.0025 17.4 1.0 0.015 14.9 0.0 2.6 3 0 0 3 3 2 1 HPr Serine kinase N terminus Snapin_Pallidin PF14712.1 gi|305663924|ref|YP_003860212.1| - 0.0033 17.6 6.7 0.0033 17.6 4.7 3.2 3 1 0 3 3 3 1 Snapin/Pallidin TSC22 PF01166.13 gi|305663924|ref|YP_003860212.1| - 0.0091 15.9 2.0 0.0091 15.9 1.4 3.5 3 1 1 4 4 4 1 TSC-22/dip/bun family DRTGG PF07085.7 gi|305663924|ref|YP_003860212.1| - 0.0092 15.5 0.4 0.88 9.1 0.0 3.2 3 1 1 4 4 3 1 DRTGG domain DUF4140 PF13600.1 gi|305663924|ref|YP_003860212.1| - 0.018 15.5 13.6 3.3 8.2 0.7 3.5 2 1 1 3 3 3 0 N-terminal domain of unknown function (DUF4140) Fmp27_WPPW PF10359.4 gi|305663924|ref|YP_003860212.1| - 0.024 13.0 4.5 0.041 12.2 3.1 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.16 gi|305663924|ref|YP_003860212.1| - 0.027 14.4 19.3 0.1 12.5 5.9 2.9 2 0 0 2 2 2 0 bZIP transcription factor Reo_sigmaC PF04582.7 gi|305663924|ref|YP_003860212.1| - 0.041 13.0 0.1 0.079 12.1 0.1 1.4 1 0 0 1 1 1 0 Reovirus sigma C capsid protein MutS_II PF05188.12 gi|305663924|ref|YP_003860212.1| - 0.066 13.2 2.2 0.47 10.5 0.0 2.8 2 1 1 3 3 3 0 MutS domain II PG_binding_1 PF01471.13 gi|305663924|ref|YP_003860212.1| - 0.089 12.7 0.0 0.24 11.3 0.0 1.7 1 0 0 1 1 1 0 Putative peptidoglycan binding domain CK_II_beta PF01214.13 gi|305663924|ref|YP_003860212.1| - 0.11 12.0 3.1 0.68 9.4 0.3 2.3 2 0 0 2 2 2 0 Casein kinase II regulatory subunit Syntaxin PF00804.20 gi|305663924|ref|YP_003860212.1| - 0.15 12.2 12.6 0.021 14.9 5.3 2.2 2 0 0 2 2 2 0 Syntaxin Atg14 PF10186.4 gi|305663924|ref|YP_003860212.1| - 0.22 10.4 13.5 1.1 8.0 2.8 2.4 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Fib_alpha PF08702.5 gi|305663924|ref|YP_003860212.1| - 0.39 10.8 15.7 0.12 12.5 3.4 2.8 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Prefoldin PF02996.12 gi|305663924|ref|YP_003860212.1| - 0.53 9.9 12.7 4 7.1 1.8 2.9 2 0 0 2 2 2 0 Prefoldin subunit AKNA PF12443.3 gi|305663924|ref|YP_003860212.1| - 1.2 9.1 5.9 1.4 8.9 0.1 2.6 2 0 0 2 2 2 0 AT-hook-containing transcription factor DUF2730 PF10805.3 gi|305663924|ref|YP_003860212.1| - 1.9 8.2 10.3 0.53 10.0 2.6 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2730) DUF904 PF06005.7 gi|305663924|ref|YP_003860212.1| - 2.5 8.4 26.4 1.4 9.2 3.3 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF904) DUF4200 PF13863.1 gi|305663924|ref|YP_003860212.1| - 2.7 7.9 21.8 0.22 11.4 1.4 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Syntaxin_2 PF14523.1 gi|305663924|ref|YP_003860212.1| - 5.4 7.1 16.0 2.3 8.3 1.1 3.8 4 0 0 4 4 4 0 Syntaxin-like protein DUF972 PF06156.8 gi|305663924|ref|YP_003860212.1| - 8 6.8 12.4 2.8 8.3 1.2 3.0 3 0 0 3 3 2 0 Protein of unknown function (DUF972) Lzipper-MIP1 PF14389.1 gi|305663924|ref|YP_003860212.1| - 8.5 6.5 18.9 4.1 7.5 4.4 4.1 3 1 1 4 4 4 0 Leucine-zipper of ternary complex factor MIP1 DivIC PF04977.10 gi|305663924|ref|YP_003860212.1| - 9.6 5.7 14.9 2.9 7.4 1.6 3.1 2 0 0 2 2 2 0 Septum formation initiator RIO1 PF01163.17 gi|305663925|ref|YP_003860213.1| - 4.5e-34 117.4 0.0 7.5e-34 116.7 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|305663925|ref|YP_003860213.1| - 3.2e-10 39.9 0.8 5.4e-10 39.2 0.6 1.4 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|305663925|ref|YP_003860213.1| - 8.1e-07 29.0 0.1 0.009 15.7 0.0 3.0 2 1 0 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|305663925|ref|YP_003860213.1| - 1.2e-05 24.5 0.0 3.5e-05 23.0 0.0 1.7 1 1 1 2 2 2 1 Protein kinase domain EcKinase PF02958.15 gi|305663925|ref|YP_003860213.1| - 0.0052 15.9 0.0 0.0084 15.2 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase DUF1580 PF07618.6 gi|305663925|ref|YP_003860213.1| - 0.017 14.4 0.1 1.6 8.1 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1580) Seadorna_VP7 PF07387.6 gi|305663925|ref|YP_003860213.1| - 0.061 12.1 0.3 4.7 5.9 0.0 2.2 2 0 0 2 2 2 0 Seadornavirus VP7 YrbL-PhoP_reg PF10707.4 gi|305663925|ref|YP_003860213.1| - 0.072 12.4 0.1 0.43 9.8 0.0 2.1 2 0 0 2 2 2 0 PhoP regulatory network protein YrbL tRNA-synt_2c PF01411.14 gi|305663927|ref|YP_003860215.1| - 2.9e-13 49.0 0.1 5.2e-13 48.1 0.1 1.4 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|305663927|ref|YP_003860215.1| - 5.3e-10 39.0 0.1 1.2e-09 37.8 0.0 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain Glyco_transf_36 PF06165.6 gi|305663927|ref|YP_003860215.1| - 0.16 11.8 0.3 0.62 9.9 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 36 DUF4443 PF14544.1 gi|305663928|ref|YP_003860216.1| - 3.6e-08 33.2 0.3 7.1e-08 32.3 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4443) DUF4093 PF13331.1 gi|305663928|ref|YP_003860216.1| - 0.0022 18.1 0.1 0.011 15.9 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4093) PHZA_PHZB PF03284.8 gi|305663928|ref|YP_003860216.1| - 0.035 13.2 0.0 0.058 12.4 0.0 1.3 1 0 0 1 1 1 0 Phenazine biosynthesis protein A/B TFIIE_alpha PF02002.12 gi|305663928|ref|YP_003860216.1| - 0.11 11.9 1.8 0.19 11.2 0.2 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit HMG-CoA_red PF00368.13 gi|305663929|ref|YP_003860217.1| - 4.9e-86 288.7 5.6 5.8e-86 288.4 3.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF434 PF04256.7 gi|305663930|ref|YP_003860218.1| - 5.5e-17 60.8 0.6 9.3e-17 60.1 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF434) zf-C2H2 PF00096.21 gi|305663932|ref|YP_003860220.1| - 3.6e-05 23.8 0.1 5.2e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2H2_6 PF13912.1 gi|305663932|ref|YP_003860220.1| - 5e-05 23.0 0.1 7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-met PF12874.2 gi|305663932|ref|YP_003860220.1| - 0.0012 18.9 0.1 0.0018 18.4 0.1 1.2 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_4 PF13894.1 gi|305663932|ref|YP_003860220.1| - 0.0036 17.5 0.1 0.0049 17.0 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|305663932|ref|YP_003860220.1| - 0.11 12.7 0.1 0.17 12.0 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding PAC2 PF09754.4 gi|305663933|ref|YP_003860221.1| - 3.1e-32 112.1 0.0 3.9e-32 111.8 0.0 1.0 1 0 0 1 1 1 1 PAC2 family bact-PGI_C PF10432.4 gi|305663934|ref|YP_003860222.1| - 8.7e-34 116.4 0.0 1.2e-33 115.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial phospho-glucose isomerase C-terminal region SIS PF01380.17 gi|305663934|ref|YP_003860222.1| - 2.3e-07 30.4 0.3 3.2e-05 23.5 0.0 3.1 2 1 1 3 3 3 1 SIS domain PGI PF00342.14 gi|305663934|ref|YP_003860222.1| - 0.0057 15.1 0.4 0.01 14.2 0.3 1.4 1 0 0 1 1 1 1 Phosphoglucose isomerase Ribosomal_L38e PF01781.13 gi|305663935|ref|YP_003860223.1| - 6.1e-09 35.5 2.4 1.1e-08 34.6 1.7 1.5 1 1 1 2 2 2 1 Ribosomal L38e protein family Prok-JAB PF14464.1 gi|305663936|ref|YP_003860224.1| - 0.14 11.7 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain SfsA PF03749.8 gi|305663937|ref|YP_003860225.1| - 0.0086 15.5 0.1 0.022 14.2 0.0 1.6 2 0 0 2 2 2 1 Sugar fermentation stimulation protein Type_III_YscX PF09474.5 gi|305663937|ref|YP_003860225.1| - 0.011 15.7 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 Type III secretion system YscX (type_III_YscX) tRNA_deacylase PF04414.7 gi|305663938|ref|YP_003860226.1| - 1.5e-55 187.6 0.0 1.8e-55 187.3 0.0 1.0 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase PDEase_II PF02112.10 gi|305663938|ref|YP_003860226.1| - 0.1 11.4 0.0 0.19 10.6 0.0 1.4 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Beta-Casp PF10996.3 gi|305663939|ref|YP_003860227.1| - 1.5e-21 76.5 0.0 2.5e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|305663939|ref|YP_003860227.1| - 9.6e-17 61.2 0.1 3.4e-16 59.4 0.1 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|305663939|ref|YP_003860227.1| - 4.2e-14 52.5 0.0 8.7e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|305663939|ref|YP_003860227.1| - 6.8e-09 35.4 0.3 5.4e-08 32.5 0.0 2.5 3 0 0 3 3 3 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|305663939|ref|YP_003860227.1| - 0.0001 22.0 0.0 0.0007 19.3 0.0 2.2 1 1 1 2 2 2 1 Beta-lactamase superfamily domain PDEase_II PF02112.10 gi|305663939|ref|YP_003860227.1| - 0.14 11.0 0.0 0.23 10.3 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II NAC PF01849.13 gi|305663940|ref|YP_003860228.1| - 1.2e-09 37.5 1.0 2.5e-09 36.5 0.7 1.6 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|305663940|ref|YP_003860228.1| - 4.3e-06 26.4 0.9 0.00024 20.8 0.1 2.4 2 0 0 2 2 2 2 UBA/TS-N domain DUF95 PF01944.12 gi|305663942|ref|YP_003860230.1| - 0.066 12.8 4.9 0.08 12.5 3.4 1.1 1 0 0 1 1 1 0 Integral membrane protein DUF95 DUF95 PF01944.12 gi|305663943|ref|YP_003860231.1| - 3.5e-06 26.7 1.0 3.8e-06 26.6 0.7 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF95 HTH_11 PF08279.7 gi|305663944|ref|YP_003860232.1| - 2.6e-05 23.7 1.2 4.6e-05 22.9 0.1 2.0 2 0 0 2 2 2 1 HTH domain TrmB PF01978.14 gi|305663944|ref|YP_003860232.1| - 0.0002 21.0 0.1 0.00042 19.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|305663944|ref|YP_003860232.1| - 0.00026 20.8 0.0 0.00064 19.6 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|305663944|ref|YP_003860232.1| - 0.0008 19.0 0.0 0.0019 17.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|305663944|ref|YP_003860232.1| - 0.00096 18.4 0.5 0.0051 16.1 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.1 gi|305663944|ref|YP_003860232.1| - 0.0021 17.8 2.9 0.0057 16.4 0.1 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix HTH_DeoR PF08220.7 gi|305663944|ref|YP_003860232.1| - 0.004 16.6 0.1 0.0088 15.5 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|305663944|ref|YP_003860232.1| - 0.016 14.8 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_36 PF13730.1 gi|305663944|ref|YP_003860232.1| - 0.02 14.9 0.0 0.071 13.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|305663944|ref|YP_003860232.1| - 0.025 14.4 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r4_2 PF08281.7 gi|305663944|ref|YP_003860232.1| - 0.027 13.9 0.1 0.053 12.9 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|305663944|ref|YP_003860232.1| - 0.034 13.7 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4393 PF14337.1 gi|305663944|ref|YP_003860232.1| - 0.046 13.1 0.2 0.08 12.3 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4393) HTH_20 PF12840.2 gi|305663944|ref|YP_003860232.1| - 0.059 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|305663944|ref|YP_003860232.1| - 0.078 13.1 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 FaeA-like protein HTH_40 PF14493.1 gi|305663944|ref|YP_003860232.1| - 0.11 12.7 0.5 18 5.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain SAM_adeno_trans PF01887.11 gi|305663945|ref|YP_003860233.1| - 1.5e-85 286.4 0.0 1.6e-85 286.2 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase AhpC-TSA PF00578.16 gi|305663947|ref|YP_003860235.1| - 8.2e-36 122.4 0.0 1.5e-35 121.6 0.0 1.4 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|305663947|ref|YP_003860235.1| - 1.1e-14 54.2 0.0 1.6e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.4 gi|305663947|ref|YP_003860235.1| - 1.4e-09 37.4 0.1 2.6e-09 36.5 0.1 1.5 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin DUF4368 PF14287.1 gi|305663947|ref|YP_003860235.1| - 0.029 14.2 0.1 0.1 12.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4368) Peptidase_M54 PF07998.6 gi|305663948|ref|YP_003860236.1| - 6.3e-29 101.1 0.2 9.8e-29 100.5 0.2 1.4 1 1 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|305663948|ref|YP_003860236.1| - 0.0006 19.5 0.0 0.0011 18.6 0.0 1.4 1 0 0 1 1 1 1 Matrixin DUF1025 PF06262.6 gi|305663948|ref|YP_003860236.1| - 0.055 13.2 0.0 5.9 6.7 0.0 2.2 2 0 0 2 2 2 0 Possibl zinc metallo-peptidase Metallopep PF12044.3 gi|305663948|ref|YP_003860236.1| - 0.064 11.7 0.1 0.087 11.2 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|305663948|ref|YP_003860236.1| - 0.078 11.8 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|305663948|ref|YP_003860236.1| - 0.15 11.6 0.1 0.22 11.0 0.1 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A BPD_transp_1 PF00528.17 gi|305663949|ref|YP_003860237.1| - 1.1e-17 64.1 17.3 1.1e-17 64.1 12.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|305663950|ref|YP_003860238.1| - 5.6e-37 127.0 0.0 7.9e-37 126.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663950|ref|YP_003860238.1| - 9.9e-19 68.3 0.8 6e-16 59.2 0.6 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305663950|ref|YP_003860238.1| - 8.2e-11 41.5 0.1 1.5e-10 40.7 0.1 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|305663950|ref|YP_003860238.1| - 8.6e-08 31.6 1.4 0.0014 17.7 0.0 2.3 1 1 1 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|305663950|ref|YP_003860238.1| - 5.2e-06 25.8 0.0 9.7e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|305663950|ref|YP_003860238.1| - 1.2e-05 24.9 0.1 0.0056 16.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain ABC_ATPase PF09818.4 gi|305663950|ref|YP_003860238.1| - 2.2e-05 23.2 1.0 0.068 11.7 0.2 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|305663950|ref|YP_003860238.1| - 0.00013 21.7 0.4 0.0041 16.8 0.3 2.2 1 1 0 1 1 1 1 Archaeal ATPase AAA_23 PF13476.1 gi|305663950|ref|YP_003860238.1| - 0.0002 21.7 0.7 0.00035 20.9 0.5 1.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|305663950|ref|YP_003860238.1| - 0.00027 20.1 0.1 0.00043 19.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|305663950|ref|YP_003860238.1| - 0.00035 20.6 0.1 0.00052 20.0 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305663950|ref|YP_003860238.1| - 0.00088 19.4 0.1 0.011 15.8 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.1 gi|305663950|ref|YP_003860238.1| - 0.00093 17.7 0.1 0.026 12.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|305663950|ref|YP_003860238.1| - 0.001 19.2 0.1 0.027 14.6 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|305663950|ref|YP_003860238.1| - 0.0036 17.1 0.1 0.032 14.1 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit T4SS-DNA_transf PF02534.9 gi|305663950|ref|YP_003860238.1| - 0.0053 15.3 0.0 0.0063 15.1 0.0 1.1 1 0 0 1 1 1 1 Type IV secretory system Conjugative DNA transfer AAA_17 PF13207.1 gi|305663950|ref|YP_003860238.1| - 0.012 16.4 1.3 0.039 14.7 0.9 2.3 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305663950|ref|YP_003860238.1| - 0.013 15.3 0.0 0.079 12.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|305663950|ref|YP_003860238.1| - 0.013 15.1 0.2 0.057 13.0 0.1 2.0 1 1 1 2 2 2 0 NACHT domain AAA_18 PF13238.1 gi|305663950|ref|YP_003860238.1| - 0.023 14.9 0.2 0.12 12.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|305663950|ref|YP_003860238.1| - 0.037 13.7 0.0 1.7 8.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|305663950|ref|YP_003860238.1| - 0.038 12.8 0.0 0.061 12.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Adeno_IVa2 PF02456.10 gi|305663950|ref|YP_003860238.1| - 0.04 12.5 0.3 0.13 10.8 0.0 1.9 2 1 1 3 3 3 0 Adenovirus IVa2 protein AAA_25 PF13481.1 gi|305663950|ref|YP_003860238.1| - 0.041 13.2 0.1 0.53 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|305663950|ref|YP_003860238.1| - 0.041 13.6 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain MutS_V PF00488.16 gi|305663950|ref|YP_003860238.1| - 0.05 13.0 0.0 0.21 10.9 0.0 2.0 1 1 1 2 2 2 0 MutS domain V AAA_33 PF13671.1 gi|305663950|ref|YP_003860238.1| - 0.054 13.3 0.0 0.16 11.8 0.0 1.7 2 0 0 2 2 1 0 AAA domain KH_2 PF07650.12 gi|305663950|ref|YP_003860238.1| - 0.055 13.0 1.2 0.19 11.3 0.1 2.4 2 1 0 2 2 2 0 KH domain MobB PF03205.9 gi|305663950|ref|YP_003860238.1| - 0.056 13.1 0.1 0.14 11.9 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|305663950|ref|YP_003860238.1| - 0.09 12.3 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA12 PF10443.4 gi|305663950|ref|YP_003860238.1| - 0.11 10.9 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 RNA12 protein AAA_24 PF13479.1 gi|305663950|ref|YP_003860238.1| - 0.12 11.9 0.1 0.22 11.0 0.0 1.5 2 0 0 2 2 1 0 AAA domain Mg_chelatase PF01078.16 gi|305663950|ref|YP_003860238.1| - 0.13 11.4 0.0 0.44 9.6 0.0 1.8 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI CobU PF02283.11 gi|305663950|ref|YP_003860238.1| - 0.16 11.3 0.3 1.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase BPD_transp_1 PF00528.17 gi|305663951|ref|YP_003860239.1| - 1.4e-13 50.7 17.6 1.4e-13 50.7 12.2 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|305663952|ref|YP_003860240.1| - 3.4e-65 219.4 0.4 3.8e-65 219.2 0.3 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|305663952|ref|YP_003860240.1| - 1.9e-08 34.1 1.2 1.7e-05 24.5 0.2 2.3 1 1 1 2 2 2 2 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|305663952|ref|YP_003860240.1| - 1.7e-07 30.8 0.1 2.6e-07 30.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TctC PF03401.9 gi|305663952|ref|YP_003860240.1| - 0.00013 21.0 0.8 0.00048 19.1 0.1 2.2 2 1 1 3 3 3 1 Tripartite tricarboxylate transporter family receptor YhfZ_C PF14503.1 gi|305663952|ref|YP_003860240.1| - 0.00071 18.9 4.3 0.01 15.1 0.9 2.1 1 1 1 2 2 2 2 YhfZ C-terminal domain OpuAC PF04069.7 gi|305663952|ref|YP_003860240.1| - 0.00082 18.7 0.2 0.75 9.0 0.0 2.1 1 1 1 2 2 2 2 Substrate binding domain of ABC-type glycine betaine transport system SBP_bac_11 PF13531.1 gi|305663952|ref|YP_003860240.1| - 0.0018 17.9 0.3 0.0083 15.7 0.2 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein FA_synthesis PF02504.10 gi|305663952|ref|YP_003860240.1| - 0.025 13.4 0.2 0.032 13.0 0.1 1.1 1 0 0 1 1 1 0 Fatty acid synthesis protein BacteriocIIc_cy PF12173.3 gi|305663952|ref|YP_003860240.1| - 0.028 14.4 1.6 0.27 11.3 0.0 2.7 3 0 0 3 3 3 0 Bacteriocin class IIc cyclic gassericin A-like Wzz PF02706.10 gi|305663952|ref|YP_003860240.1| - 0.13 12.1 11.0 0.016 15.0 0.8 2.3 2 0 0 2 2 2 0 Chain length determinant protein N_methyl_3 PF13633.1 gi|305663952|ref|YP_003860240.1| - 0.99 9.4 7.0 2 8.4 4.9 1.5 1 0 0 1 1 1 0 Prokaryotic N-terminal methylation site ILVD_EDD PF00920.16 gi|305663953|ref|YP_003860241.1| - 1.5e-224 746.2 0.7 1.7e-224 746.0 0.5 1.0 1 0 0 1 1 1 1 Dehydratase family HMGL-like PF00682.14 gi|305663954|ref|YP_003860242.1| - 4.1e-48 164.1 0.0 6.1e-48 163.5 0.0 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|305663954|ref|YP_003860242.1| - 0.012 15.8 0.7 0.16 12.0 0.1 2.9 2 2 0 2 2 2 0 Radical SAM superfamily PEP_mutase PF13714.1 gi|305663954|ref|YP_003860242.1| - 0.039 13.1 0.0 0.072 12.2 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase CPSase_L_D3 PF02787.14 gi|305663954|ref|YP_003860242.1| - 0.065 12.9 0.1 0.29 10.9 0.0 2.1 1 1 0 1 1 1 0 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IlvN PF07991.7 gi|305663955|ref|YP_003860243.1| - 1.1e-69 233.0 0.0 1.5e-69 232.6 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|305663955|ref|YP_003860243.1| - 1.1e-47 161.5 1.0 1.7e-47 161.0 0.7 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|305663955|ref|YP_003860243.1| - 2.7e-07 30.9 0.0 1.2e-06 28.8 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|305663955|ref|YP_003860243.1| - 2.7e-05 23.3 0.0 5.6e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|305663955|ref|YP_003860243.1| - 3.7e-05 23.6 0.0 8.8e-05 22.3 0.0 1.6 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|305663955|ref|YP_003860243.1| - 0.0052 16.5 0.7 2.3 7.9 0.0 2.6 3 0 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|305663955|ref|YP_003860243.1| - 0.018 14.4 0.0 0.033 13.6 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|305663955|ref|YP_003860243.1| - 0.02 14.7 0.0 0.071 12.9 0.0 1.9 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Crp PF00325.15 gi|305663955|ref|YP_003860243.1| - 0.053 12.9 1.2 0.34 10.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family DUF2538 PF10804.3 gi|305663956|ref|YP_003860244.1| - 0.0047 16.8 0.3 0.0059 16.4 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2538) ACT_5 PF13710.1 gi|305663956|ref|YP_003860244.1| - 0.01 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 0 ACT domain TPP_enzyme_N PF02776.13 gi|305663957|ref|YP_003860245.1| - 9.3e-58 194.5 0.1 9.4e-57 191.2 0.1 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|305663957|ref|YP_003860245.1| - 1.8e-44 150.9 1.5 7.5e-43 145.7 0.1 2.9 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|305663957|ref|YP_003860245.1| - 8.2e-37 126.0 0.3 1.1e-35 122.3 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.14 gi|305663957|ref|YP_003860245.1| - 8.4e-05 22.1 0.7 0.00049 19.6 0.2 2.1 2 0 0 2 2 2 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CO_dh PF02552.11 gi|305663957|ref|YP_003860245.1| - 0.015 14.8 0.5 0.05 13.1 0.3 1.9 1 1 1 2 2 2 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit HMGL-like PF00682.14 gi|305663959|ref|YP_003860247.1| - 4.3e-77 258.9 1.8 5.9e-77 258.5 1.3 1.2 1 0 0 1 1 1 1 HMGL-like Radical_SAM PF04055.16 gi|305663959|ref|YP_003860247.1| - 0.039 14.1 0.4 0.59 10.2 0.1 2.6 2 1 0 2 2 2 0 Radical SAM superfamily Iso_dh PF00180.15 gi|305663960|ref|YP_003860248.1| - 8.2e-103 343.9 0.2 9.7e-103 343.7 0.2 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.7 gi|305663960|ref|YP_003860248.1| - 0.0056 15.9 0.0 0.0094 15.1 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal phosphate biosynthetic protein PdxA dTMP_synthase PF02593.9 gi|305663960|ref|YP_003860248.1| - 0.15 11.3 0.1 0.42 9.9 0.0 1.6 1 1 1 2 2 2 0 Thymidylate synthase Zip PF02535.17 gi|305663961|ref|YP_003860249.1| - 3.2e-23 82.2 21.9 2.1e-19 69.7 6.6 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter E1-E2_ATPase PF00122.15 gi|305663961|ref|YP_003860249.1| - 2.2e-05 23.6 4.0 9.4e-05 21.5 0.6 3.4 1 1 3 4 4 4 2 E1-E2 ATPase Sulfate_tra_GLY PF13792.1 gi|305663961|ref|YP_003860249.1| - 0.22 11.2 8.8 0.13 11.9 1.3 3.9 2 1 1 3 3 3 0 Sulfate transporter N-terminal domain with GLY motif PGI PF00342.14 gi|305663962|ref|YP_003860250.1| - 0.12 10.7 0.4 0.13 10.6 0.3 1.0 1 0 0 1 1 1 0 Phosphoglucose isomerase Aldolase_II PF00596.16 gi|305663963|ref|YP_003860251.1| - 1.6e-43 148.4 0.0 1.8e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain CRISPR_Cas2 PF09827.4 gi|305663964|ref|YP_003860252.1| - 0.038 14.1 0.0 0.046 13.8 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas2 PRA-CH PF01502.13 gi|305663965|ref|YP_003860253.1| - 8.2e-33 111.8 0.0 1.3e-32 111.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase GATase PF00117.23 gi|305663966|ref|YP_003860254.1| - 3.2e-25 88.7 0.0 3.8e-25 88.4 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|305663966|ref|YP_003860254.1| - 0.048 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PRA-PH PF01503.12 gi|305663967|ref|YP_003860255.1| - 5.2e-11 42.6 0.0 6e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase DUF3662 PF12401.3 gi|305663967|ref|YP_003860255.1| - 0.12 12.5 0.0 5 7.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2662) Endotoxin_N PF03945.9 gi|305663967|ref|YP_003860255.1| - 0.13 11.6 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain Histidinol_dh PF00815.15 gi|305663968|ref|YP_003860256.1| - 3e-114 381.8 0.1 7.9e-114 380.4 0.1 1.6 1 1 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.16 gi|305663969|ref|YP_003860257.1| - 1.3e-83 279.8 4.3 1.4e-83 279.6 3.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.10 gi|305663969|ref|YP_003860257.1| - 1.2e-06 27.9 1.2 0.016 14.3 0.1 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.12 gi|305663969|ref|YP_003860257.1| - 2.3e-05 23.5 0.6 0.16 11.0 0.1 2.4 2 1 0 2 2 2 2 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|305663969|ref|YP_003860257.1| - 4.3e-05 22.6 0.3 0.026 13.6 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|305663969|ref|YP_003860257.1| - 0.00065 18.7 0.4 0.12 11.2 0.0 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase PcrB PF01884.12 gi|305663969|ref|YP_003860257.1| - 0.0018 17.6 0.9 0.012 14.8 0.1 2.4 2 1 1 3 3 3 1 PcrB family Dus PF01207.12 gi|305663969|ref|YP_003860257.1| - 0.0027 16.5 0.1 0.82 8.4 0.0 2.3 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) FMN_dh PF01070.13 gi|305663969|ref|YP_003860257.1| - 0.023 13.5 1.1 0.2 10.4 0.2 2.3 1 1 1 2 2 2 0 FMN-dependent dehydrogenase IGPD PF00475.13 gi|305663970|ref|YP_003860258.1| - 2.6e-49 166.7 0.3 4e-49 166.1 0.1 1.4 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase CDC48_2 PF02933.12 gi|305663970|ref|YP_003860258.1| - 0.012 15.2 0.0 0.029 13.9 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), domain 2 His_biosynth PF00977.16 gi|305663971|ref|YP_003860259.1| - 3.9e-48 163.7 1.8 4.4e-48 163.5 1.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.12 gi|305663971|ref|YP_003860259.1| - 0.00013 21.3 1.7 0.00013 21.2 0.2 1.7 2 0 0 2 2 2 1 PcrB family DUF1572 PF07609.6 gi|305663971|ref|YP_003860259.1| - 0.15 11.6 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1572) HisG PF01634.13 gi|305663972|ref|YP_003860260.1| - 4.1e-50 169.5 0.0 5.5e-50 169.1 0.0 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|305663972|ref|YP_003860260.1| - 3.1e-20 71.8 0.8 1.5e-19 69.6 0.9 2.0 2 0 0 2 2 2 1 HisG, C-terminal domain Aminotran_1_2 PF00155.16 gi|305663973|ref|YP_003860261.1| - 3.8e-43 147.8 0.0 4.2e-43 147.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Fer4 PF00037.22 gi|305663975|ref|YP_003860263.1| - 2.1e-16 58.7 17.6 1.4e-08 33.9 3.8 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305663975|ref|YP_003860263.1| - 3e-14 53.1 26.4 2.2e-10 40.7 10.1 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305663975|ref|YP_003860263.1| - 1.9e-12 46.8 11.5 2.3e-12 46.5 8.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305663975|ref|YP_003860263.1| - 2.2e-12 46.5 24.9 1.1e-09 37.8 9.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305663975|ref|YP_003860263.1| - 3.5e-12 45.6 16.8 6.8e-07 28.8 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|305663975|ref|YP_003860263.1| - 1.3e-11 43.6 14.5 1.6e-06 27.6 1.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|305663975|ref|YP_003860263.1| - 2.7e-10 40.3 14.6 3.6e-10 39.9 10.1 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|305663975|ref|YP_003860263.1| - 3.2e-09 37.1 11.6 1.6e-06 28.5 1.1 2.2 1 1 1 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|305663975|ref|YP_003860263.1| - 2.4e-08 34.5 6.7 0.00026 21.6 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|305663975|ref|YP_003860263.1| - 5.6e-08 33.0 9.7 0.0012 19.2 1.0 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|305663975|ref|YP_003860263.1| - 6.7e-08 32.2 16.2 5.2e-05 23.2 2.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|305663975|ref|YP_003860263.1| - 1.5e-07 31.6 6.2 0.0028 17.9 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305663975|ref|YP_003860263.1| - 2.9e-07 30.4 23.5 9.5e-06 25.5 9.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|305663975|ref|YP_003860263.1| - 2.3e-06 27.8 14.7 2e-05 24.8 1.1 2.7 2 1 1 3 3 3 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|305663975|ref|YP_003860263.1| - 2.4e-05 24.5 20.2 0.01 16.3 4.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_11 PF13247.1 gi|305663975|ref|YP_003860263.1| - 0.00066 19.5 7.1 0.0024 17.7 4.9 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_19 PF06902.6 gi|305663975|ref|YP_003860263.1| - 0.0051 16.6 5.7 0.0062 16.3 3.9 1.1 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster c-SKI_SMAD_bind PF08782.5 gi|305663975|ref|YP_003860263.1| - 0.036 14.2 1.0 0.036 14.2 0.7 2.0 1 1 1 2 2 2 0 c-SKI Smad4 binding domain Toxin_2 PF00451.14 gi|305663975|ref|YP_003860263.1| - 5.4 7.1 10.7 2.6 8.2 1.4 2.2 2 0 0 2 2 2 0 Scorpion short toxin, BmKK2 DUF362 PF04015.7 gi|305663976|ref|YP_003860264.1| - 3.4e-20 72.4 0.0 4.2e-20 72.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) DUF2088 PF09861.4 gi|305663976|ref|YP_003860264.1| - 0.096 11.6 0.2 0.31 10.0 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF2088) DEAD PF00270.24 gi|305663977|ref|YP_003860265.1| - 5.9e-28 97.4 0.0 9.9e-28 96.7 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|305663977|ref|YP_003860265.1| - 3.3e-09 36.4 0.0 6.9e-09 35.4 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|305663977|ref|YP_003860265.1| - 1.8e-05 24.6 0.0 3.2e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|305663977|ref|YP_003860265.1| - 6.2e-05 21.9 0.0 0.0001 21.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain HHH_5 PF14520.1 gi|305663977|ref|YP_003860265.1| - 0.041 14.0 0.1 0.2 11.8 0.1 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain ATP-grasp_5 PF13549.1 gi|305663978|ref|YP_003860266.1| - 4.6e-81 271.2 0.1 5.2e-81 271.1 0.1 1.0 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.5 gi|305663978|ref|YP_003860266.1| - 1.3e-07 31.2 0.0 1.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain RimK PF08443.6 gi|305663978|ref|YP_003860266.1| - 4.4e-05 23.0 0.0 6.5e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|305663978|ref|YP_003860266.1| - 0.00047 19.9 0.0 0.0007 19.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|305663978|ref|YP_003860266.1| - 0.011 15.0 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|305663978|ref|YP_003860266.1| - 0.02 14.2 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|305663979|ref|YP_003860267.1| - 3.5e-53 178.9 0.1 1.4e-51 173.7 0.0 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|305663979|ref|YP_003860267.1| - 4.9e-24 84.7 0.1 5e-23 81.4 0.1 2.3 2 1 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|305663979|ref|YP_003860267.1| - 4.1e-15 56.0 0.6 2.3e-14 53.6 0.0 2.4 2 0 0 2 2 2 1 CoA binding domain MSC PF09402.5 gi|305663980|ref|YP_003860268.1| - 0.62 8.7 2.1 1.1 7.9 1.5 1.3 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain DUF3329 PF11808.3 gi|305663980|ref|YP_003860268.1| - 5 7.2 7.8 0.61 10.2 0.2 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3329) AsnC_trans_reg PF01037.16 gi|305663982|ref|YP_003860270.1| - 1.6e-16 59.7 0.2 2.9e-16 58.9 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|305663982|ref|YP_003860270.1| - 3.5e-10 39.1 1.4 6.9e-10 38.1 1.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|305663982|ref|YP_003860270.1| - 1.1e-08 34.3 1.8 1.1e-08 34.3 1.2 1.9 3 0 0 3 3 3 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|305663982|ref|YP_003860270.1| - 0.00016 21.2 0.4 0.001 18.6 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|305663982|ref|YP_003860270.1| - 0.00071 19.1 0.2 0.0023 17.5 0.2 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_38 PF13936.1 gi|305663982|ref|YP_003860270.1| - 0.00071 19.0 0.2 0.0017 17.8 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|305663982|ref|YP_003860270.1| - 0.00087 18.9 1.0 0.0044 16.6 0.0 2.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.1 gi|305663982|ref|YP_003860270.1| - 0.0015 18.1 0.2 0.025 14.2 0.1 2.4 1 1 1 2 2 2 1 Homeodomain-like domain MarR PF01047.17 gi|305663982|ref|YP_003860270.1| - 0.002 17.8 0.8 0.036 13.7 0.1 2.3 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.11 gi|305663982|ref|YP_003860270.1| - 0.004 16.6 0.0 0.0071 15.8 0.0 1.3 1 0 0 1 1 1 1 LexA DNA binding domain Sigma70_r4_2 PF08281.7 gi|305663982|ref|YP_003860270.1| - 0.0043 16.4 0.1 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|305663982|ref|YP_003860270.1| - 0.0053 16.2 1.1 0.009 15.5 0.2 1.7 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|305663982|ref|YP_003860270.1| - 0.0071 15.9 0.6 0.021 14.4 0.2 1.9 2 0 0 2 2 2 1 HTH domain HTH_Crp_2 PF13545.1 gi|305663982|ref|YP_003860270.1| - 0.0074 16.0 0.1 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.1 gi|305663982|ref|YP_003860270.1| - 0.024 14.6 0.1 0.3 11.1 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|305663982|ref|YP_003860270.1| - 0.059 13.3 0.0 0.43 10.5 0.0 2.3 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|305663982|ref|YP_003860270.1| - 0.095 13.0 0.1 0.35 11.2 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|305663982|ref|YP_003860270.1| - 0.11 12.6 0.1 0.31 11.1 0.0 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|305663982|ref|YP_003860270.1| - 0.11 12.2 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DEAD PF00270.24 gi|305663983|ref|YP_003860271.1| - 5.6e-15 55.2 0.0 1.1e-14 54.3 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|305663983|ref|YP_003860271.1| - 1.4e-10 40.8 0.9 9.2e-10 38.2 0.5 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|305663983|ref|YP_003860271.1| - 0.013 15.3 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit DUF3647 PF12363.3 gi|305663984|ref|YP_003860272.1| - 0.018 15.1 0.1 0.04 14.0 0.0 1.6 1 1 0 1 1 1 0 Phage protein YbjQ_1 PF01906.12 gi|305663984|ref|YP_003860272.1| - 0.019 15.3 0.4 0.32 11.4 0.0 2.1 1 1 0 2 2 2 0 Putative heavy-metal-binding DndB PF14072.1 gi|305663984|ref|YP_003860272.1| - 0.029 13.5 0.2 0.032 13.3 0.1 1.1 1 0 0 1 1 1 0 DNA-sulfur modification-associated LytR_cpsA_psr PF03816.9 gi|305663984|ref|YP_003860272.1| - 0.056 13.3 0.0 0.075 12.9 0.0 1.1 1 0 0 1 1 1 0 Cell envelope-related transcriptional attenuator domain ERF PF04404.7 gi|305663984|ref|YP_003860272.1| - 0.06 12.8 0.5 2.5 7.6 0.1 2.0 1 1 0 2 2 2 0 ERF superfamily DUF1765 PF08578.5 gi|305663985|ref|YP_003860273.1| - 0.11 12.5 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1765) CitMHS PF03600.11 gi|305663987|ref|YP_003860275.1| - 3.7e-22 78.3 44.2 7.7e-19 67.4 15.8 2.5 1 1 2 3 3 3 3 Citrate transporter ArsB PF02040.10 gi|305663987|ref|YP_003860275.1| - 2.3e-10 39.9 44.9 8.3e-10 38.1 31.0 2.0 1 1 1 2 2 2 1 Arsenical pump membrane protein Na_sulph_symp PF00939.14 gi|305663987|ref|YP_003860275.1| - 2.8e-06 26.4 48.4 1.9e-05 23.7 17.7 3.0 2 1 0 2 2 2 2 Sodium:sulfate symporter transmembrane region ATPgrasp_Ter PF15632.1 gi|305663988|ref|YP_003860276.1| - 3.4e-13 49.0 0.0 3.3e-08 32.6 0.0 2.2 1 1 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|305663988|ref|YP_003860276.1| - 2.8e-10 40.2 0.0 5.6e-10 39.2 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305663988|ref|YP_003860276.1| - 4.8e-05 23.2 0.0 0.00017 21.5 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp domain HAD_2 PF13419.1 gi|305663988|ref|YP_003860276.1| - 0.00014 22.1 0.1 0.00042 20.5 0.1 1.8 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Polysacc_deac_1 PF01522.16 gi|305663989|ref|YP_003860277.1| - 1.2e-05 24.9 0.0 3.4e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Polysaccharide deacetylase Malic_M PF03949.10 gi|305663990|ref|YP_003860278.1| - 4.5e-66 223.0 1.1 5.6e-66 222.7 0.8 1.1 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|305663990|ref|YP_003860278.1| - 2.1e-25 89.3 0.5 2.2e-17 63.1 0.1 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain ELFV_dehydrog PF00208.16 gi|305663990|ref|YP_003860278.1| - 0.068 12.7 0.1 0.14 11.6 0.0 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HTH_24 PF13412.1 gi|305663991|ref|YP_003860279.1| - 4.5e-06 25.9 0.0 8.5e-06 25.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|305663991|ref|YP_003860279.1| - 0.00012 21.8 0.0 0.00019 21.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|305663991|ref|YP_003860279.1| - 0.00083 19.0 0.0 0.0022 17.6 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|305663991|ref|YP_003860279.1| - 0.00099 18.7 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|305663991|ref|YP_003860279.1| - 0.0014 18.2 0.1 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|305663991|ref|YP_003860279.1| - 0.0092 15.6 0.1 0.039 13.6 0.1 2.0 1 1 0 1 1 1 1 MarR family DUF912 PF06024.7 gi|305663991|ref|YP_003860279.1| - 0.036 14.1 5.9 0.51 10.4 0.1 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus protein of unknown function (DUF912) MarR_2 PF12802.2 gi|305663991|ref|YP_003860279.1| - 0.058 13.0 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|305663991|ref|YP_003860279.1| - 0.11 12.0 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rifin_STEVOR PF02009.11 gi|305663991|ref|YP_003860279.1| - 0.19 11.3 4.4 0.37 10.4 3.1 1.4 1 0 0 1 1 1 0 Rifin/stevor family DUF3566 PF12089.3 gi|305663991|ref|YP_003860279.1| - 0.21 11.6 5.0 2.2 8.3 0.1 2.4 2 0 0 2 2 2 0 Transmembrane domain of unknown function (DUF3566) EphA2_TM PF14575.1 gi|305663991|ref|YP_003860279.1| - 0.27 11.6 3.2 1.9 8.9 0.4 2.3 2 0 0 2 2 2 0 Ephrin type-A receptor 2 transmembrane domain DUF788 PF05620.6 gi|305663991|ref|YP_003860279.1| - 0.66 9.8 4.1 1.9 8.2 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF788) DUF4577 PF15145.1 gi|305663991|ref|YP_003860279.1| - 0.8 9.6 3.7 1.7 8.5 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4577) ASFV_J13L PF05568.6 gi|305663991|ref|YP_003860279.1| - 0.89 9.0 8.4 0.068 12.6 0.8 2.2 2 0 0 2 2 2 0 African swine fever virus J13L protein P12 PF12669.2 gi|305663991|ref|YP_003860279.1| - 5 7.3 8.1 2.4 8.4 2.0 2.7 3 0 0 3 3 3 0 Virus attachment protein p12 family zf-DHHC PF01529.15 gi|305663991|ref|YP_003860279.1| - 5.4 6.3 9.9 35 3.7 6.9 2.0 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF3753 PF12575.3 gi|305663991|ref|YP_003860279.1| - 8.4 6.2 11.2 0.68 9.7 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3753) DUF4234 PF14018.1 gi|305663991|ref|YP_003860279.1| - 8.5 6.1 9.8 30 4.4 3.5 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4234) DUF3139 PF11337.3 gi|305663991|ref|YP_003860279.1| - 9.7 6.5 12.5 2.2 8.6 1.4 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3139) Sugarporin_N PF11471.3 gi|305663992|ref|YP_003860280.1| - 0.0013 18.3 1.2 0.0013 18.3 0.9 3.2 3 0 0 3 3 2 1 Maltoporin periplasmic N-terminal extension DUF972 PF06156.8 gi|305663992|ref|YP_003860280.1| - 0.012 15.9 1.0 0.012 15.9 0.7 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF972) Apolipoprotein PF01442.13 gi|305663992|ref|YP_003860280.1| - 0.012 15.1 19.4 0.015 14.8 4.7 3.6 3 0 0 3 3 3 0 Apolipoprotein A1/A4/E domain Bromodomain PF00439.20 gi|305663992|ref|YP_003860280.1| - 0.019 14.8 2.0 0.073 13.0 0.1 3.0 3 1 0 3 3 2 0 Bromodomain PX PF00787.19 gi|305663992|ref|YP_003860280.1| - 0.036 13.8 2.9 4.7 7.0 0.1 3.5 3 0 0 3 3 3 0 PX domain DUF883 PF05957.8 gi|305663992|ref|YP_003860280.1| - 0.061 13.7 0.5 0.061 13.7 0.3 5.2 4 3 1 5 5 5 0 Bacterial protein of unknown function (DUF883) Serine_rich PF08824.5 gi|305663992|ref|YP_003860280.1| - 0.079 12.6 12.2 0.083 12.6 1.2 3.9 2 1 2 4 4 4 0 Serine rich protein interaction domain FF PF01846.14 gi|305663992|ref|YP_003860280.1| - 0.088 12.7 0.5 6.1 6.8 0.0 3.0 2 0 0 2 2 2 0 FF domain Laminin_II PF06009.7 gi|305663992|ref|YP_003860280.1| - 0.43 10.3 28.0 0.3 10.8 0.3 4.5 3 1 1 4 4 4 0 Laminin Domain II Vac_Fusion PF02346.11 gi|305663992|ref|YP_003860280.1| - 1.3 8.4 8.7 0.47 9.9 0.3 3.6 3 0 0 3 3 3 0 Chordopoxvirus fusion protein DUF4398 PF14346.1 gi|305663992|ref|YP_003860280.1| - 1.8 8.6 12.1 2.9 7.9 0.3 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4398) DUF1515 PF07439.6 gi|305663992|ref|YP_003860280.1| - 2.3 8.0 10.1 0.44 10.3 0.1 3.5 2 1 1 4 4 4 0 Protein of unknown function (DUF1515) Reo_sigmaC PF04582.7 gi|305663992|ref|YP_003860280.1| - 2.4 7.2 18.2 1.6 7.8 0.2 3.9 2 1 2 4 4 4 0 Reovirus sigma C capsid protein YtxH PF12732.2 gi|305663992|ref|YP_003860280.1| - 3.3 8.1 15.2 1.2 9.6 0.7 4.9 4 2 1 5 5 4 0 YtxH-like protein Amidase PF01425.16 gi|305663992|ref|YP_003860280.1| - 3.4 6.4 4.9 1.9 7.2 0.8 2.0 1 1 1 2 2 2 0 Amidase Phasin PF05597.6 gi|305663992|ref|YP_003860280.1| - 3.7 7.3 19.4 0.17 11.6 3.1 4.5 2 1 2 4 4 4 0 Poly(hydroxyalcanoate) granule associated protein (phasin) ATP-synt_DE PF00401.15 gi|305663992|ref|YP_003860280.1| - 4.1 7.3 18.3 1.5 8.8 0.8 5.1 4 1 0 4 4 4 0 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Acetyltransf_11 PF13720.1 gi|305663992|ref|YP_003860280.1| - 4.1 7.6 13.2 3.1 8.0 0.3 5.2 2 1 3 5 5 5 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Abi_C PF14355.1 gi|305663992|ref|YP_003860280.1| - 7.3 6.6 10.5 25 4.8 0.2 4.8 4 1 1 5 5 5 0 Abortive infection C-terminus Rifin_STEVOR PF02009.11 gi|305663993|ref|YP_003860281.1| - 10 5.6 8.2 14 5.2 5.7 1.2 1 0 0 1 1 1 0 Rifin/stevor family DUF650 PF04894.7 gi|305663994|ref|YP_003860282.1| - 4.4e-100 334.6 0.0 5.5e-100 334.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|305663994|ref|YP_003860282.1| - 2.6e-33 113.9 0.3 4.3e-33 113.2 0.2 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) RHH_3 PF12651.2 gi|305663995|ref|YP_003860283.1| - 2.5e-09 36.6 0.0 4.4e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain RHH_1 PF01402.16 gi|305663995|ref|YP_003860283.1| - 0.00012 21.7 0.1 0.00022 20.9 0.1 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.6 gi|305663995|ref|YP_003860283.1| - 0.00015 21.6 0.4 0.00026 20.8 0.3 1.4 1 0 0 1 1 1 1 NikR C terminal nickel binding domain Orthopox_F6 PF06601.7 gi|305663995|ref|YP_003860283.1| - 0.062 13.2 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Orthopoxvirus F6 protein DUF4217 PF13959.1 gi|305663995|ref|YP_003860283.1| - 0.1 12.1 0.3 6.2 6.4 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4217) ABC-3 PF00950.12 gi|305663996|ref|YP_003860284.1| - 2e-18 66.6 33.1 2e-18 66.6 22.9 1.3 1 1 0 1 1 1 1 ABC 3 transport family TroA PF01297.12 gi|305663997|ref|YP_003860285.1| - 1.9e-18 66.6 0.0 2.4e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family Hpr_kinase_N PF02603.11 gi|305663997|ref|YP_003860285.1| - 0.0027 17.3 0.3 0.0065 16.1 0.2 1.7 1 0 0 1 1 1 1 HPr Serine kinase N terminus Rifin_STEVOR PF02009.11 gi|305663997|ref|YP_003860285.1| - 2.1 7.9 5.2 2.5 7.6 3.6 1.3 1 0 0 1 1 1 0 Rifin/stevor family ABC_tran PF00005.22 gi|305663998|ref|YP_003860286.1| - 8.7e-30 103.8 0.0 1.1e-29 103.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305663998|ref|YP_003860286.1| - 7e-15 55.7 2.1 3.9e-08 33.6 0.2 2.1 1 1 1 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|305663998|ref|YP_003860286.1| - 2.5e-07 30.1 0.2 0.0031 16.6 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|305663998|ref|YP_003860286.1| - 1.5e-05 24.3 0.0 0.031 13.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|305663998|ref|YP_003860286.1| - 6.7e-05 22.3 0.1 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|305663998|ref|YP_003860286.1| - 7e-05 23.2 0.0 9.9e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305663998|ref|YP_003860286.1| - 0.00089 19.2 0.7 0.0022 17.9 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|305663998|ref|YP_003860286.1| - 0.0017 17.8 0.0 0.0028 17.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|305663998|ref|YP_003860286.1| - 0.0019 17.3 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|305663998|ref|YP_003860286.1| - 0.0036 17.5 0.0 0.012 15.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|305663998|ref|YP_003860286.1| - 0.0037 17.1 0.1 0.013 15.3 0.1 2.0 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|305663998|ref|YP_003860286.1| - 0.0041 16.8 0.1 0.01 15.5 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|305663998|ref|YP_003860286.1| - 0.0049 17.0 0.1 0.0078 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|305663998|ref|YP_003860286.1| - 0.0062 16.1 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|305663998|ref|YP_003860286.1| - 0.0063 16.2 0.2 0.02 14.6 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain T2SE PF00437.15 gi|305663998|ref|YP_003860286.1| - 0.0076 15.1 0.0 0.013 14.4 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein NACHT PF05729.7 gi|305663998|ref|YP_003860286.1| - 0.012 15.2 0.2 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.1 gi|305663998|ref|YP_003860286.1| - 0.014 16.2 1.2 0.041 14.6 0.8 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|305663998|ref|YP_003860286.1| - 0.017 15.0 0.0 0.051 13.4 0.0 1.8 2 1 0 2 2 1 0 AAA domain Rad17 PF03215.10 gi|305663998|ref|YP_003860286.1| - 0.022 13.4 0.0 0.031 12.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|305663998|ref|YP_003860286.1| - 0.024 14.2 0.1 0.043 13.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|305663998|ref|YP_003860286.1| - 0.026 14.4 0.1 0.25 11.2 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|305663998|ref|YP_003860286.1| - 0.043 13.0 0.0 0.07 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|305663998|ref|YP_003860286.1| - 0.053 13.0 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305663998|ref|YP_003860286.1| - 0.062 12.7 0.4 0.1 12.0 0.3 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain PduV-EutP PF10662.4 gi|305663998|ref|YP_003860286.1| - 0.062 12.7 0.1 0.16 11.4 0.1 1.6 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MutS_V PF00488.16 gi|305663998|ref|YP_003860286.1| - 0.065 12.6 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 MutS domain V SRP54 PF00448.17 gi|305663998|ref|YP_003860286.1| - 0.07 12.5 0.2 0.1 12.0 0.1 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.1 gi|305663998|ref|YP_003860286.1| - 0.085 12.8 0.2 0.16 11.8 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305663998|ref|YP_003860286.1| - 0.087 12.2 0.0 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain Zeta_toxin PF06414.7 gi|305663998|ref|YP_003860286.1| - 0.11 11.5 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|305663998|ref|YP_003860286.1| - 0.12 12.0 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|305663998|ref|YP_003860286.1| - 0.13 12.5 1.3 0.38 11.0 0.8 2.1 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|305663998|ref|YP_003860286.1| - 0.15 12.5 0.0 0.45 11.0 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein ABC_ATPase PF09818.4 gi|305663998|ref|YP_003860286.1| - 0.15 10.5 0.1 0.26 9.8 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class MoaE PF02391.12 gi|305663999|ref|YP_003860287.1| - 5.2e-25 87.5 0.7 8e-25 86.9 0.5 1.3 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.15 gi|305663999|ref|YP_003860287.1| - 9.6e-13 48.3 0.5 3.2e-12 46.7 0.0 2.1 3 0 0 3 3 3 1 ThiS family MarR_2 PF12802.2 gi|305664000|ref|YP_003860288.1| - 3.2e-07 29.9 0.0 1e-06 28.2 0.0 1.8 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|305664000|ref|YP_003860288.1| - 2e-06 27.3 0.2 5.3e-06 26.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|305664000|ref|YP_003860288.1| - 5.1e-06 25.7 1.6 1.1e-05 24.6 1.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.1 gi|305664000|ref|YP_003860288.1| - 0.00031 20.4 0.2 0.001 18.8 0.1 1.9 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DUF2443 PF10398.4 gi|305664000|ref|YP_003860288.1| - 0.0014 18.4 0.1 0.2 11.4 0.0 2.8 2 0 0 2 2 2 1 Protein of unknown function (DUF2443) VitK2_biosynth PF02621.9 gi|305664000|ref|YP_003860288.1| - 0.0018 17.5 0.0 0.021 14.0 0.0 2.0 1 1 0 1 1 1 1 Menaquinone biosynthesis B-block_TFIIIC PF04182.7 gi|305664000|ref|YP_003860288.1| - 0.0042 16.8 0.1 0.013 15.3 0.1 1.8 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.14 gi|305664000|ref|YP_003860288.1| - 0.0063 16.1 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|305664000|ref|YP_003860288.1| - 0.019 15.0 0.0 0.05 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator MreB_Mbl PF06723.8 gi|305664000|ref|YP_003860288.1| - 0.023 13.2 0.1 0.036 12.6 0.0 1.2 1 0 0 1 1 1 0 MreB/Mbl protein HTH_IclR PF09339.5 gi|305664000|ref|YP_003860288.1| - 0.036 13.6 0.0 0.075 12.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|305664000|ref|YP_003860288.1| - 0.059 13.0 0.3 0.21 11.3 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HxlR PF01638.12 gi|305664000|ref|YP_003860288.1| - 0.068 12.8 0.1 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Radical_SAM PF04055.16 gi|305664001|ref|YP_003860289.1| - 1.3e-10 41.7 0.0 4.3e-10 40.0 0.0 1.8 2 0 0 2 2 2 1 Radical SAM superfamily DUF1848 PF08902.6 gi|305664001|ref|YP_003860289.1| - 3.8 6.9 8.2 32 3.9 4.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1848) Thymidylat_synt PF00303.14 gi|305664003|ref|YP_003860291.1| - 7.2e-37 126.8 0.0 8.6e-37 126.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase RGS PF00615.14 gi|305664003|ref|YP_003860291.1| - 0.062 13.4 1.9 0.11 12.6 0.9 1.8 2 0 0 2 2 2 0 Regulator of G protein signaling domain DUF4445 PF14574.1 gi|305664004|ref|YP_003860292.1| - 6.2e-151 502.3 0.3 7.3e-151 502.0 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4445) Fer2 PF00111.22 gi|305664004|ref|YP_003860292.1| - 1.8e-10 40.4 0.0 3.5e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Bmp PF02608.9 gi|305664005|ref|YP_003860293.1| - 2.8e-26 91.9 0.4 3.6e-26 91.6 0.3 1.1 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_6 PF13458.1 gi|305664005|ref|YP_003860293.1| - 0.0061 15.9 0.2 0.1 11.8 0.0 2.2 2 0 0 2 2 2 1 Periplasmic binding protein VirB8 PF04335.8 gi|305664005|ref|YP_003860293.1| - 0.25 10.9 2.7 1.6 8.2 0.0 2.3 2 0 0 2 2 2 0 VirB8 protein ABC_tran PF00005.22 gi|305664006|ref|YP_003860294.1| - 5.9e-41 139.9 0.0 3.3e-25 88.9 0.0 2.4 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|305664006|ref|YP_003860294.1| - 7.2e-07 29.4 4.0 0.0002 21.4 0.3 3.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|305664006|ref|YP_003860294.1| - 0.0012 18.7 0.2 0.094 12.6 0.0 3.1 2 1 1 3 3 3 1 AAA domain AAA_10 PF12846.2 gi|305664006|ref|YP_003860294.1| - 0.0024 17.3 1.0 3.6 6.9 0.0 3.4 3 1 0 3 3 3 2 AAA-like domain AAA_23 PF13476.1 gi|305664006|ref|YP_003860294.1| - 0.0057 16.9 0.1 0.011 16.0 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305664006|ref|YP_003860294.1| - 0.018 14.5 0.0 0.051 13.1 0.0 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|305664006|ref|YP_003860294.1| - 0.031 14.4 0.9 1.3 9.1 0.1 3.2 3 1 0 3 3 3 0 AAA domain Mgm101p PF06420.7 gi|305664006|ref|YP_003860294.1| - 0.033 13.5 0.0 1.9 7.8 0.0 2.5 2 0 0 2 2 2 0 Mitochondrial genome maintenance MGM101 DUF808 PF05661.7 gi|305664006|ref|YP_003860294.1| - 0.045 12.5 0.0 0.094 11.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF808) AAA PF00004.24 gi|305664006|ref|YP_003860294.1| - 0.086 13.0 0.0 0.56 10.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|305664006|ref|YP_003860294.1| - 0.19 10.9 0.1 0.68 9.1 0.1 1.9 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_2 PF02653.11 gi|305664007|ref|YP_003860295.1| - 1.1e-38 132.6 27.8 1.1e-38 132.6 19.3 1.7 1 1 1 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|305664008|ref|YP_003860296.1| - 1.6e-22 79.7 35.6 2.2e-22 79.3 24.7 1.2 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component PHO4 PF01384.15 gi|305664009|ref|YP_003860297.1| - 1.6e-60 204.4 41.0 2.7e-60 203.7 28.4 1.3 1 1 0 1 1 1 1 Phosphate transporter family T_cell_tran_alt PF15128.1 gi|305664009|ref|YP_003860297.1| - 0.89 9.0 9.6 0.86 9.0 0.8 3.2 2 1 2 4 4 4 0 T-cell leukemia translocation-altered FGGY_N PF00370.16 gi|305664010|ref|YP_003860298.1| - 1e-16 61.0 0.0 5.7e-16 58.5 0.0 2.0 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|305664010|ref|YP_003860298.1| - 1.2e-10 41.3 0.0 2e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain AP_endonuc_2 PF01261.19 gi|305664011|ref|YP_003860299.1| - 1.4e-11 44.0 0.0 2e-11 43.6 0.0 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Radical_SAM PF04055.16 gi|305664011|ref|YP_003860299.1| - 0.07 13.3 0.0 2.1 8.4 0.0 2.8 2 1 1 3 3 3 0 Radical SAM superfamily FAD-oxidase_C PF02913.14 gi|305664011|ref|YP_003860299.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain Fucose_iso_C PF02952.12 gi|305664012|ref|YP_003860300.1| - 8.4e-20 70.7 0.0 1.2e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 L-fucose isomerase, C-terminal domain Aldolase_II PF00596.16 gi|305664013|ref|YP_003860301.1| - 6.8e-32 110.5 0.0 8.5e-32 110.2 0.0 1.1 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain FGGY_N PF00370.16 gi|305664014|ref|YP_003860302.1| - 2.5e-31 108.8 0.0 3.4e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|305664014|ref|YP_003860302.1| - 4.6e-24 85.1 0.0 6.2e-24 84.7 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain RuBisCO_large PF00016.15 gi|305664015|ref|YP_003860303.1| - 6.9e-76 255.0 0.0 9e-76 254.6 0.0 1.1 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|305664015|ref|YP_003860303.1| - 2.6e-29 101.4 0.0 6e-29 100.3 0.0 1.5 2 0 0 2 2 2 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain DUF697 PF05128.7 gi|305664015|ref|YP_003860303.1| - 0.17 11.3 0.1 0.31 10.5 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF697) Hydrolase_3 PF08282.7 gi|305664016|ref|YP_003860304.1| - 4.6e-28 98.4 0.0 1.5e-20 73.9 0.0 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|305664016|ref|YP_003860304.1| - 3.2e-08 33.1 0.0 5.2e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.2 gi|305664016|ref|YP_003860304.1| - 9.7e-06 25.8 0.0 3.7e-05 23.9 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|305664016|ref|YP_003860304.1| - 0.00011 22.6 0.0 0.0004 20.8 0.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|305664016|ref|YP_003860304.1| - 0.058 13.6 0.0 10 6.2 0.0 2.4 1 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase CxxCxxCC PF03692.10 gi|305664017|ref|YP_003860305.1| - 7.4e-10 39.1 0.8 1e-09 38.7 0.6 1.2 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF402 PF04167.8 gi|305664017|ref|YP_003860305.1| - 0.15 11.9 0.6 0.27 11.0 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF402) AhpC-TSA_2 PF13911.1 gi|305664018|ref|YP_003860306.1| - 0.11 12.3 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Mem_trans PF03547.13 gi|305664019|ref|YP_003860307.1| - 6.5e-09 34.5 30.9 0.00011 20.6 11.9 2.3 1 1 1 2 2 2 2 Membrane transport protein Nol1_Nop2_Fmu PF01189.12 gi|305664020|ref|YP_003860308.1| - 8.5e-35 120.5 0.0 1.1e-34 120.0 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|305664020|ref|YP_003860308.1| - 0.0021 17.6 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|305664020|ref|YP_003860308.1| - 0.014 15.4 0.0 0.044 13.7 0.0 1.7 1 1 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|305664020|ref|YP_003860308.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Fusion_gly PF00523.13 gi|305664021|ref|YP_003860309.1| - 0.16 9.9 0.5 2.4 6.1 0.0 1.9 1 1 1 2 2 2 0 Fusion glycoprotein F0 DUF4157 PF13699.1 gi|305664022|ref|YP_003860310.1| - 0.00023 21.2 0.0 0.00045 20.2 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) SprT-like PF10263.4 gi|305664022|ref|YP_003860310.1| - 0.0067 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 SprT-like family IL31 PF15209.1 gi|305664022|ref|YP_003860310.1| - 0.0071 15.9 0.1 0.018 14.6 0.1 1.6 1 0 0 1 1 1 1 Interleukin 31 Peptidase_MA_2 PF13485.1 gi|305664022|ref|YP_003860310.1| - 0.0079 16.2 0.4 0.037 14.0 0.2 1.9 1 1 0 1 1 1 1 Peptidase MA superfamily BSP PF04450.7 gi|305664022|ref|YP_003860310.1| - 0.065 12.6 0.2 0.23 10.8 0.0 1.8 2 0 0 2 2 2 0 Peptidase of plants and bacteria Glycos_transf_2 PF00535.21 gi|305664023|ref|YP_003860311.1| - 3.6e-24 85.3 0.7 5.6e-24 84.7 0.5 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|305664023|ref|YP_003860311.1| - 1.7e-14 54.1 0.0 2.2e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|305664023|ref|YP_003860311.1| - 4e-08 32.7 0.0 8e-08 31.7 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|305664023|ref|YP_003860311.1| - 5.2e-06 25.7 0.1 1.2e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|305664023|ref|YP_003860311.1| - 2.5e-05 24.4 0.0 5.2e-05 23.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 PfkB PF00294.19 gi|305664025|ref|YP_003860313.1| - 2.3e-30 105.7 0.0 3e-30 105.3 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Trypsin_2 PF13365.1 gi|305664026|ref|YP_003860314.1| - 2.3e-21 75.9 0.4 3.3e-21 75.4 0.3 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|305664026|ref|YP_003860314.1| - 4.4e-16 59.1 0.0 1.2e-15 57.7 0.0 1.6 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|305664026|ref|YP_003860314.1| - 2e-10 40.3 0.0 1.1e-09 38.0 0.0 2.1 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.19 gi|305664026|ref|YP_003860314.1| - 4.5e-07 29.9 0.0 1.3e-06 28.5 0.0 1.8 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|305664026|ref|YP_003860314.1| - 0.00035 19.1 0.9 0.17 10.2 0.2 2.1 2 0 0 2 2 2 2 Peptidase S46 Utp12 PF04003.7 gi|305664029|ref|YP_003860317.1| - 0.057 13.3 0.0 0.59 10.0 0.0 2.5 3 0 0 3 3 3 0 Dip2/Utp12 Family DUF948 PF06103.6 gi|305664029|ref|YP_003860317.1| - 0.11 12.4 0.1 1.5 8.7 0.0 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) UPF0184 PF03670.8 gi|305664029|ref|YP_003860317.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0184) CARDB PF07705.6 gi|305664031|ref|YP_003860319.1| - 0.00086 19.3 5.4 0.0062 16.5 0.1 4.2 3 1 1 4 4 4 1 CARDB Cg6151-P PF10233.4 gi|305664033|ref|YP_003860321.1| - 0.0065 16.4 1.2 0.0065 16.4 0.8 1.8 2 0 0 2 2 2 1 Uncharacterized conserved protein CG6151-P TauE PF01925.14 gi|305664033|ref|YP_003860321.1| - 0.024 14.1 10.9 0.045 13.1 7.6 1.4 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE Ferric_reduct PF01794.14 gi|305664033|ref|YP_003860321.1| - 0.14 12.2 5.1 0.52 10.4 3.5 2.0 1 1 0 1 1 1 0 Ferric reductase like transmembrane component MARVEL PF01284.18 gi|305664033|ref|YP_003860321.1| - 0.34 10.7 13.2 0.52 10.1 3.0 2.0 1 1 1 2 2 2 0 Membrane-associating domain Ycf4 PF02392.11 gi|305664033|ref|YP_003860321.1| - 0.5 9.6 5.4 0.82 8.9 3.8 1.4 1 1 0 1 1 1 0 Ycf4 Tetraspannin PF00335.15 gi|305664033|ref|YP_003860321.1| - 0.9 8.7 10.2 1.2 8.3 7.1 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF4282 PF14110.1 gi|305664033|ref|YP_003860321.1| - 2.3 8.4 12.1 0.76 9.9 4.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) PIRT PF15099.1 gi|305664033|ref|YP_003860321.1| - 3.9 6.7 5.9 4.6 6.4 4.1 1.2 1 0 0 1 1 1 0 Phosphoinositide-interacting protein family EmrE PF13536.1 gi|305664033|ref|YP_003860321.1| - 7.8 6.7 11.2 17 5.6 7.8 1.6 1 1 0 1 1 1 0 Multidrug resistance efflux transporter T2SF PF00482.18 gi|305664034|ref|YP_003860322.1| - 1.2e-12 47.7 4.0 6.8e-07 29.2 0.1 3.2 2 1 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|305664035|ref|YP_003860323.1| - 5.2e-49 166.5 0.0 8.1e-49 165.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|305664035|ref|YP_003860323.1| - 8.2e-05 22.0 0.1 0.00018 20.9 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|305664035|ref|YP_003860323.1| - 0.032 14.5 0.0 0.06 13.6 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_23 PF13476.1 gi|305664035|ref|YP_003860323.1| - 0.032 14.5 0.6 0.11 12.8 0.4 1.8 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|305664035|ref|YP_003860323.1| - 0.033 14.3 0.0 0.11 12.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|305664035|ref|YP_003860323.1| - 0.072 12.5 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|305664035|ref|YP_003860323.1| - 0.13 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin KaiC PF06745.8 gi|305664036|ref|YP_003860324.1| - 4.8e-24 84.7 0.1 5.4e-24 84.5 0.0 1.0 1 0 0 1 1 1 1 KaiC PAXNEB PF05625.6 gi|305664036|ref|YP_003860324.1| - 1.1e-06 27.7 0.6 0.0013 17.6 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein AAA_25 PF13481.1 gi|305664036|ref|YP_003860324.1| - 1.1e-06 28.1 0.0 1.8e-06 27.5 0.0 1.3 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|305664036|ref|YP_003860324.1| - 5.4e-05 22.7 0.1 9.7e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) IstB_IS21 PF01695.12 gi|305664036|ref|YP_003860324.1| - 8.9e-05 21.9 0.1 0.00031 20.2 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein Rad51 PF08423.6 gi|305664036|ref|YP_003860324.1| - 0.00035 19.5 0.0 0.00049 19.0 0.0 1.2 1 0 0 1 1 1 1 Rad51 NACHT PF05729.7 gi|305664036|ref|YP_003860324.1| - 0.001 18.7 0.3 0.0019 17.8 0.2 1.7 1 1 0 1 1 1 1 NACHT domain GvpD PF07088.6 gi|305664036|ref|YP_003860324.1| - 0.0026 16.1 0.1 0.004 15.5 0.1 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein Arch_ATPase PF01637.13 gi|305664036|ref|YP_003860324.1| - 0.007 16.0 0.1 0.0095 15.6 0.1 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_10 PF12846.2 gi|305664036|ref|YP_003860324.1| - 0.0083 15.5 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain Bac_DnaA PF00308.13 gi|305664036|ref|YP_003860324.1| - 0.01 15.4 0.7 0.31 10.6 0.1 2.1 1 1 1 2 2 2 0 Bacterial dnaA protein UPF0079 PF02367.12 gi|305664036|ref|YP_003860324.1| - 0.011 15.3 0.1 0.051 13.1 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|305664036|ref|YP_003860324.1| - 0.014 15.5 0.0 0.026 14.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain DAP3 PF10236.4 gi|305664036|ref|YP_003860324.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 PIGA PF08288.7 gi|305664036|ref|YP_003860324.1| - 0.042 14.2 1.1 1.5 9.2 0.0 2.2 1 1 0 2 2 2 0 PIGA (GPI anchor biosynthesis) MobB PF03205.9 gi|305664036|ref|YP_003860324.1| - 0.047 13.3 0.1 0.18 11.5 0.0 2.0 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|305664036|ref|YP_003860324.1| - 0.047 13.6 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain RecA PF00154.16 gi|305664036|ref|YP_003860324.1| - 0.054 12.5 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 recA bacterial DNA recombination protein DUF2075 PF09848.4 gi|305664036|ref|YP_003860324.1| - 0.07 12.0 0.0 0.091 11.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Miro PF08477.8 gi|305664036|ref|YP_003860324.1| - 0.08 13.4 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein DUF815 PF05673.8 gi|305664036|ref|YP_003860324.1| - 0.11 11.3 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|305664036|ref|YP_003860324.1| - 0.12 11.8 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_30 PF13604.1 gi|305664036|ref|YP_003860324.1| - 0.14 11.6 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF948 PF06103.6 gi|305664037|ref|YP_003860325.1| - 0.18 11.6 1.0 0.27 11.1 0.7 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Arch_flagellin PF01917.11 gi|305664037|ref|YP_003860325.1| - 0.36 10.4 6.8 0.67 9.5 4.7 1.6 1 1 0 1 1 1 0 Archaebacterial flagellin DUF3989 PF13150.1 gi|305664037|ref|YP_003860325.1| - 2.2 7.7 5.4 1.4 8.4 2.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF3989) Arch_flagellin PF01917.11 gi|305664038|ref|YP_003860326.1| - 1.6e-10 40.9 4.3 2.4e-10 40.3 3.0 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin 7tm_4 PF13853.1 gi|305664038|ref|YP_003860326.1| - 0.12 12.1 0.7 0.17 11.6 0.5 1.2 1 0 0 1 1 1 0 Olfactory receptor DUF4367 PF14285.1 gi|305664038|ref|YP_003860326.1| - 3.5 6.9 7.1 13 5.0 4.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4367) DUF2205 PF10224.4 gi|305664039|ref|YP_003860327.1| - 0.011 15.3 0.6 0.023 14.2 0.4 1.6 1 0 0 1 1 1 0 Predicted coiled-coil protein (DUF2205) Baculo_PEP_C PF04513.7 gi|305664039|ref|YP_003860327.1| - 0.013 15.2 0.1 0.025 14.4 0.1 1.6 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus RmuC PF02646.11 gi|305664039|ref|YP_003860327.1| - 0.017 13.9 0.3 0.047 12.5 0.1 1.7 2 0 0 2 2 2 0 RmuC family FlaC_arch PF05377.6 gi|305664039|ref|YP_003860327.1| - 0.02 14.8 0.9 0.02 14.8 0.6 2.7 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) Syntaxin-6_N PF09177.6 gi|305664039|ref|YP_003860327.1| - 0.024 15.0 4.0 0.11 12.9 1.8 2.6 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Orthopox_A5L PF06193.6 gi|305664039|ref|YP_003860327.1| - 0.03 14.2 2.4 1.4 8.8 1.1 2.6 1 1 1 2 2 2 0 Orthopoxvirus A5L protein-like Peptidase_S64 PF08192.6 gi|305664039|ref|YP_003860327.1| - 0.032 12.5 0.5 0.041 12.2 0.3 1.1 1 0 0 1 1 1 0 Peptidase family S64 COG2 PF06148.6 gi|305664039|ref|YP_003860327.1| - 0.039 13.8 1.0 0.089 12.6 0.4 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 IncA PF04156.9 gi|305664039|ref|YP_003860327.1| - 0.042 13.4 3.3 0.062 12.8 2.3 1.4 1 0 0 1 1 1 0 IncA protein FragX_IP PF05994.6 gi|305664039|ref|YP_003860327.1| - 0.043 11.6 0.3 0.061 11.0 0.2 1.1 1 0 0 1 1 1 0 Cytoplasmic Fragile-X interacting family DUF4559 PF15112.1 gi|305664039|ref|YP_003860327.1| - 0.079 12.1 0.5 0.12 11.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) P4Ha_N PF08336.6 gi|305664039|ref|YP_003860327.1| - 0.1 12.3 2.1 5 6.9 1.5 2.5 1 1 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Bromo_TP PF07524.8 gi|305664039|ref|YP_003860327.1| - 0.11 12.2 0.2 2.1 8.1 0.1 2.4 2 0 0 2 2 2 0 Bromodomain associated NPV_P10 PF05531.7 gi|305664039|ref|YP_003860327.1| - 0.11 12.7 0.2 0.51 10.6 0.1 2.1 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF883 PF05957.8 gi|305664039|ref|YP_003860327.1| - 0.12 12.8 0.5 0.37 11.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) MT0933_antitox PF14013.1 gi|305664039|ref|YP_003860327.1| - 0.58 10.2 2.8 27 4.9 0.6 2.9 2 1 1 3 3 2 0 MT0933-like antitoxin protein DUF2203 PF09969.4 gi|305664039|ref|YP_003860327.1| - 0.65 10.2 6.1 19 5.5 0.0 3.4 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) HTH_45 PF14947.1 gi|305664040|ref|YP_003860328.1| - 6.1e-09 35.5 0.8 0.00014 21.5 0.1 3.1 4 0 0 4 4 3 2 Winged helix-turn-helix TrmB PF01978.14 gi|305664040|ref|YP_003860328.1| - 2e-07 30.6 0.4 6.8e-07 28.9 0.1 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|305664040|ref|YP_003860328.1| - 1.7e-06 27.6 0.1 0.00031 20.3 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|305664040|ref|YP_003860328.1| - 9.7e-06 24.8 0.7 0.0013 18.1 0.1 2.5 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF3600 PF12207.3 gi|305664040|ref|YP_003860328.1| - 4.2e-05 23.1 0.0 5.6e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF3600) HTH_27 PF13463.1 gi|305664040|ref|YP_003860328.1| - 0.0001 22.5 0.2 0.00034 20.8 0.0 1.9 2 0 0 2 2 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|305664040|ref|YP_003860328.1| - 0.00018 21.5 0.0 0.0022 18.0 0.0 2.2 2 0 0 2 2 2 1 Penicillinase repressor Rrf2 PF02082.15 gi|305664040|ref|YP_003860328.1| - 0.0019 18.2 0.9 0.14 12.3 0.0 2.6 3 0 0 3 3 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|305664040|ref|YP_003860328.1| - 0.0022 17.5 0.1 0.18 11.3 0.0 2.5 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|305664040|ref|YP_003860328.1| - 0.0078 15.8 0.1 0.057 13.0 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain DUF4364 PF14277.1 gi|305664040|ref|YP_003860328.1| - 0.0081 15.7 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) DUF2250 PF10007.4 gi|305664040|ref|YP_003860328.1| - 0.019 14.8 0.1 0.083 12.8 0.0 2.2 3 0 0 3 3 1 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|305664040|ref|YP_003860328.1| - 0.021 14.5 0.1 0.28 10.8 0.0 2.4 2 0 0 2 2 2 0 MarR family HTH_Tnp_ISL3 PF13542.1 gi|305664040|ref|YP_003860328.1| - 0.022 13.9 0.1 0.93 8.7 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Fe_dep_repress PF01325.14 gi|305664040|ref|YP_003860328.1| - 0.041 13.8 0.4 0.21 11.5 0.1 2.2 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.7 gi|305664040|ref|YP_003860328.1| - 0.055 13.4 0.1 0.33 10.9 0.0 2.4 2 0 0 2 2 2 0 PaaX-like protein Rio2_N PF09202.6 gi|305664040|ref|YP_003860328.1| - 0.057 13.4 0.1 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Rio2, N-terminal EAP30 PF04157.11 gi|305664040|ref|YP_003860328.1| - 0.059 12.5 0.0 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_5 PF01022.15 gi|305664040|ref|YP_003860328.1| - 0.079 12.6 0.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|305664040|ref|YP_003860328.1| - 0.084 12.4 0.1 0.21 11.1 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|305664040|ref|YP_003860328.1| - 0.087 12.9 0.1 1.2 9.2 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn helix DUF977 PF06163.6 gi|305664040|ref|YP_003860328.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Cytochrom_B561 PF03188.11 gi|305664042|ref|YP_003860330.1| - 0.048 13.4 5.2 0.1 12.4 3.6 1.5 1 1 0 1 1 1 0 Eukaryotic cytochrome b561 Tetraspannin PF00335.15 gi|305664042|ref|YP_003860330.1| - 0.2 10.9 6.4 0.26 10.5 4.5 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF2207 PF09972.4 gi|305664042|ref|YP_003860330.1| - 0.4 9.1 9.2 0.44 9.0 6.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UPF0197 PF05251.7 gi|305664042|ref|YP_003860330.1| - 0.66 10.3 8.3 4.5 7.6 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0197) VIT1 PF01988.14 gi|305664042|ref|YP_003860330.1| - 0.86 9.0 5.5 1.1 8.7 3.6 1.3 1 1 0 1 1 1 0 VIT family DUF202 PF02656.10 gi|305664042|ref|YP_003860330.1| - 1.3 9.3 9.0 1.5 9.0 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) ABC2_membrane_3 PF12698.2 gi|305664042|ref|YP_003860330.1| - 1.4 7.9 10.9 1.4 7.8 7.6 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein SdpI PF13630.1 gi|305664042|ref|YP_003860330.1| - 4.5 7.0 10.6 8.7 6.1 7.4 1.6 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF3671 PF12420.3 gi|305664042|ref|YP_003860330.1| - 6 6.9 8.9 8 6.5 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function Arch_flagellin PF01917.11 gi|305664043|ref|YP_003860331.1| - 7.7e-20 71.3 14.7 9e-18 64.5 5.6 2.9 2 1 0 3 3 3 2 Archaebacterial flagellin DUF4251 PF14059.1 gi|305664043|ref|YP_003860331.1| - 0.069 12.9 1.5 0.31 10.8 0.1 2.7 2 1 2 4 4 4 0 Domain of unknown function (DUF4251) DUF4389 PF14333.1 gi|305664043|ref|YP_003860331.1| - 0.093 12.4 0.5 0.19 11.4 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4389) CheR_N PF03705.10 gi|305664045|ref|YP_003860333.1| - 0.011 15.1 0.3 0.011 15.0 0.2 1.0 1 0 0 1 1 1 0 CheR methyltransferase, all-alpha domain QueT PF06177.6 gi|305664046|ref|YP_003860334.1| - 1.4e-25 90.0 16.6 1.6e-25 89.8 11.5 1.0 1 0 0 1 1 1 1 QueT transporter ECF-ribofla_trS PF07155.7 gi|305664046|ref|YP_003860334.1| - 0.57 9.8 16.8 1.7 8.3 11.7 1.8 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component ABC_tran PF00005.22 gi|305664047|ref|YP_003860335.1| - 5.1e-21 75.4 0.0 7.4e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664047|ref|YP_003860335.1| - 2.1e-10 41.0 0.3 4.4e-05 23.5 0.3 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|305664047|ref|YP_003860335.1| - 3.1e-09 36.3 0.1 0.0005 19.3 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305664047|ref|YP_003860335.1| - 2.3e-07 31.3 0.8 3.4e-07 30.8 0.5 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305664047|ref|YP_003860335.1| - 8.1e-06 25.1 0.1 0.0056 15.7 0.2 2.1 2 0 0 2 2 2 2 AAA ATPase domain Arch_ATPase PF01637.13 gi|305664047|ref|YP_003860335.1| - 0.0038 16.9 0.0 0.01 15.5 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_13 PF13166.1 gi|305664047|ref|YP_003860335.1| - 0.0049 15.4 0.3 0.0065 15.0 0.2 1.1 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|305664047|ref|YP_003860335.1| - 0.0053 16.6 0.1 0.089 12.7 0.1 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|305664047|ref|YP_003860335.1| - 0.0061 16.7 0.0 0.09 12.9 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|305664047|ref|YP_003860335.1| - 0.0095 15.4 0.2 0.02 14.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|305664047|ref|YP_003860335.1| - 0.058 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|305664047|ref|YP_003860335.1| - 0.085 12.0 0.1 0.12 11.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|305664047|ref|YP_003860335.1| - 0.1 13.3 0.1 0.17 12.7 0.1 1.7 1 1 0 1 1 1 0 AAA domain YlaC PF10777.4 gi|305664048|ref|YP_003860336.1| - 0.76 9.3 5.0 0.5 9.9 2.3 1.6 1 1 0 1 1 1 0 Inner membrane protein YlaC m04gp34like PF12216.3 gi|305664050|ref|YP_003860338.1| - 0.03 13.6 0.4 0.048 12.9 0.3 1.3 1 0 0 1 1 1 0 Immune evasion protein DUF1628 PF07790.6 gi|305664050|ref|YP_003860338.1| - 1.7 9.4 4.8 13 6.6 4.3 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) DUF1628 PF07790.6 gi|305664051|ref|YP_003860339.1| - 0.0037 17.9 2.1 0.0097 16.6 0.7 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) T2SE PF00437.15 gi|305664052|ref|YP_003860340.1| - 4.4e-50 170.0 0.0 6.1e-50 169.6 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|305664052|ref|YP_003860340.1| - 3.8e-05 24.0 0.0 0.00011 22.4 0.0 1.8 2 0 0 2 2 1 1 ABC transporter AAA_29 PF13555.1 gi|305664052|ref|YP_003860340.1| - 3.9e-05 23.1 0.0 7.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|305664052|ref|YP_003860340.1| - 6.6e-05 23.3 0.1 0.00014 22.2 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_18 PF13238.1 gi|305664052|ref|YP_003860340.1| - 0.00032 20.9 0.0 0.0016 18.7 0.0 2.3 2 1 1 3 3 2 1 AAA domain AAA_21 PF13304.1 gi|305664052|ref|YP_003860340.1| - 0.00034 20.6 0.2 0.0013 18.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|305664052|ref|YP_003860340.1| - 0.00039 20.5 0.0 0.0039 17.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|305664052|ref|YP_003860340.1| - 0.0015 19.3 0.6 0.012 16.4 0.0 2.6 3 0 0 3 3 2 1 AAA domain AAA_28 PF13521.1 gi|305664052|ref|YP_003860340.1| - 0.0033 17.4 0.0 0.014 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|305664052|ref|YP_003860340.1| - 0.0067 16.4 0.0 0.015 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|305664052|ref|YP_003860340.1| - 0.0089 16.2 0.0 0.019 15.1 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|305664052|ref|YP_003860340.1| - 0.0094 15.6 0.0 0.022 14.4 0.0 1.6 1 0 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|305664052|ref|YP_003860340.1| - 0.012 15.2 0.0 0.043 13.5 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain ResIII PF04851.10 gi|305664052|ref|YP_003860340.1| - 0.015 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit IstB_IS21 PF01695.12 gi|305664052|ref|YP_003860340.1| - 0.016 14.6 0.0 0.04 13.3 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|305664052|ref|YP_003860340.1| - 0.017 14.2 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|305664052|ref|YP_003860340.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|305664052|ref|YP_003860340.1| - 0.023 14.1 0.0 0.077 12.4 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|305664052|ref|YP_003860340.1| - 0.028 14.2 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305664052|ref|YP_003860340.1| - 0.038 13.1 0.0 0.079 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|305664052|ref|YP_003860340.1| - 0.038 13.9 0.0 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.1 gi|305664052|ref|YP_003860340.1| - 0.039 13.3 0.0 0.11 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|305664052|ref|YP_003860340.1| - 0.04 12.7 0.0 0.2 10.4 0.0 1.9 2 0 0 2 2 2 0 NB-ARC domain AAA_10 PF12846.2 gi|305664052|ref|YP_003860340.1| - 0.041 13.3 0.0 0.094 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_5 PF07728.9 gi|305664052|ref|YP_003860340.1| - 0.065 12.9 0.0 0.17 11.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) MobB PF03205.9 gi|305664052|ref|YP_003860340.1| - 0.071 12.8 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|305664052|ref|YP_003860340.1| - 0.075 13.2 0.0 0.16 12.1 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|305664052|ref|YP_003860340.1| - 0.092 12.6 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|305664052|ref|YP_003860340.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.9 gi|305664052|ref|YP_003860340.1| - 0.12 11.3 0.0 0.2 10.5 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Parvo_NS1 PF01057.12 gi|305664052|ref|YP_003860340.1| - 0.23 10.2 0.0 0.39 9.5 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 T2SF PF00482.18 gi|305664053|ref|YP_003860341.1| - 3.6e-11 43.0 0.4 3.6e-11 43.0 0.3 3.4 4 0 0 4 4 4 1 Type II secretion system (T2SS), protein F MgtE PF01769.11 gi|305664053|ref|YP_003860341.1| - 0.73 10.1 16.6 0.058 13.6 1.6 2.3 2 0 0 2 2 2 0 Divalent cation transporter T2SF PF00482.18 gi|305664054|ref|YP_003860342.1| - 4.1e-10 39.6 0.6 4.1e-10 39.6 0.4 2.6 2 0 0 2 2 2 1 Type II secretion system (T2SS), protein F Tmemb_55A PF09788.4 gi|305664054|ref|YP_003860342.1| - 0.4 9.7 2.2 0.77 8.8 1.5 1.5 1 0 0 1 1 1 0 Transmembrane protein 55A HAD_2 PF13419.1 gi|305664055|ref|YP_003860343.1| - 1.6e-18 67.5 0.0 2e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|305664055|ref|YP_003860343.1| - 8.6e-08 32.8 0.0 1.1e-06 29.2 0.0 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|305664055|ref|YP_003860343.1| - 1.4e-06 27.8 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like HTH_3 PF01381.17 gi|305664055|ref|YP_003860343.1| - 0.011 15.5 0.0 0.077 12.8 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix HTH_19 PF12844.2 gi|305664055|ref|YP_003860343.1| - 0.062 13.3 0.1 1.7 8.7 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain UBA_2 PF08587.6 gi|305664055|ref|YP_003860343.1| - 0.11 12.6 0.1 0.46 10.7 0.0 2.0 2 0 0 2 2 2 0 Ubiquitin associated domain (UBA) MazG-like PF12643.2 gi|305664055|ref|YP_003860343.1| - 0.12 12.2 0.1 0.44 10.5 0.0 1.9 2 0 0 2 2 2 0 MazG-like family OrfB_Zn_ribbon PF07282.6 gi|305664056|ref|YP_003860344.1| - 2e-20 72.2 0.2 7e-20 70.4 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|305664056|ref|YP_003860344.1| - 0.0012 18.2 2.1 0.0024 17.3 1.5 1.4 1 0 0 1 1 1 1 Probable transposase FYVE PF01363.16 gi|305664056|ref|YP_003860344.1| - 0.014 15.2 0.2 0.043 13.7 0.2 1.8 2 1 0 2 2 2 0 FYVE zinc finger DUF2039 PF10217.4 gi|305664056|ref|YP_003860344.1| - 0.05 13.6 0.8 0.17 11.9 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2039) YcxB PF14317.1 gi|305664056|ref|YP_003860344.1| - 0.059 12.6 0.2 0.13 11.4 0.1 1.6 1 0 0 1 1 1 0 YcxB-like protein Baculo_ME53 PF06061.6 gi|305664056|ref|YP_003860344.1| - 0.06 12.3 0.0 0.088 11.7 0.0 1.1 1 0 0 1 1 1 0 Baculoviridae ME53 DZR PF12773.2 gi|305664056|ref|YP_003860344.1| - 0.77 9.6 4.8 0.25 11.1 0.6 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|305664056|ref|YP_003860344.1| - 2.2 7.8 6.1 0.92 9.0 0.4 2.4 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger CYTH PF01928.16 gi|305664057|ref|YP_003860345.1| - 2e-27 96.0 0.2 2.3e-27 95.8 0.1 1.1 1 0 0 1 1 1 1 CYTH domain DUF2812 PF11193.3 gi|305664057|ref|YP_003860345.1| - 0.012 15.7 0.0 0.027 14.6 0.0 1.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2812) DUF3216 PF11505.3 gi|305664057|ref|YP_003860345.1| - 0.13 12.0 0.5 0.37 10.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3216) AP_endonuc_2 PF01261.19 gi|305664057|ref|YP_003860345.1| - 0.15 11.3 0.1 0.64 9.2 0.0 2.0 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel Phos_pyr_kin PF08543.7 gi|305664058|ref|YP_003860346.1| - 2.5e-94 315.0 0.1 3.6e-94 314.5 0.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|305664058|ref|YP_003860346.1| - 1.9e-63 212.8 2.4 3.4e-63 212.0 1.7 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|305664058|ref|YP_003860346.1| - 4.2e-10 39.2 0.0 7.4e-10 38.4 0.0 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Plasmid_stabil PF05016.9 gi|305664060|ref|YP_003860348.1| - 0.0054 17.1 0.0 0.0055 17.0 0.0 1.0 1 0 0 1 1 1 1 Plasmid stabilisation system protein DUF4065 PF13274.1 gi|305664061|ref|YP_003860349.1| - 3e-14 53.6 0.7 3.8e-14 53.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4065) RHH_1 PF01402.16 gi|305664061|ref|YP_003860349.1| - 0.011 15.5 1.1 0.016 15.0 0.1 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family CitG PF01874.11 gi|305664064|ref|YP_003860352.1| - 1.1e-49 169.0 0.0 1.4e-49 168.8 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase Parvo_NS1 PF01057.12 gi|305664064|ref|YP_003860352.1| - 0.086 11.6 0.0 0.12 11.1 0.0 1.1 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 FTA4 PF13093.1 gi|305664067|ref|YP_003860355.1| - 0.00067 19.1 3.2 0.19 11.1 0.7 2.0 2 0 0 2 2 2 2 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 UBN2_2 PF14227.1 gi|305664067|ref|YP_003860355.1| - 0.0054 16.2 0.8 0.08 12.4 0.1 2.1 2 0 0 2 2 2 1 gag-polypeptide of LTR copia-type GOLGA2L5 PF15070.1 gi|305664067|ref|YP_003860355.1| - 0.01 14.3 1.9 0.012 14.1 1.3 1.0 1 0 0 1 1 1 0 Putative golgin subfamily A member 2-like protein 5 Cortex-I_coil PF09304.5 gi|305664067|ref|YP_003860355.1| - 0.018 15.0 4.5 0.28 11.2 1.3 2.1 2 0 0 2 2 2 0 Cortexillin I, coiled coil Prefoldin PF02996.12 gi|305664067|ref|YP_003860355.1| - 0.028 14.0 4.1 0.65 9.6 0.0 2.2 2 0 0 2 2 2 0 Prefoldin subunit MerR-DNA-bind PF09278.6 gi|305664067|ref|YP_003860355.1| - 0.031 14.6 3.5 0.2 12.0 0.1 2.3 2 0 0 2 2 2 0 MerR, DNA binding Spc24 PF08286.6 gi|305664067|ref|YP_003860355.1| - 0.042 13.5 1.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 UBN2 PF14223.1 gi|305664067|ref|YP_003860355.1| - 0.047 13.4 2.0 1.2 8.9 0.4 2.2 1 1 1 2 2 2 0 gag-polypeptide of LTR copia-type Tropomyosin_1 PF12718.2 gi|305664067|ref|YP_003860355.1| - 0.055 13.3 4.7 0.18 11.6 1.7 2.0 2 0 0 2 2 2 0 Tropomyosin like MYCBPAP PF14646.1 gi|305664067|ref|YP_003860355.1| - 0.062 12.0 0.6 0.07 11.8 0.4 1.0 1 0 0 1 1 1 0 MYCBP-associated protein family SAP PF02037.22 gi|305664067|ref|YP_003860355.1| - 0.11 12.0 0.4 0.11 12.0 0.3 1.9 2 0 0 2 2 2 0 SAP domain BLOC1_2 PF10046.4 gi|305664067|ref|YP_003860355.1| - 0.12 12.4 1.3 8.4 6.6 0.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dam1 PF08653.5 gi|305664067|ref|YP_003860355.1| - 0.13 12.0 0.6 2.2 8.1 0.0 2.3 2 1 0 2 2 2 0 DASH complex subunit Dam1 CppA_N PF14506.1 gi|305664067|ref|YP_003860355.1| - 0.14 11.8 0.8 0.32 10.6 0.3 1.7 1 1 1 2 2 2 0 CppA N-terminal Phi-29_GP16_7 PF06720.6 gi|305664067|ref|YP_003860355.1| - 0.15 11.7 1.2 0.23 11.1 0.1 1.7 1 1 0 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 AAA_23 PF13476.1 gi|305664067|ref|YP_003860355.1| - 0.16 12.3 3.0 0.18 12.0 2.1 1.1 1 0 0 1 1 1 0 AAA domain 4HB_MCP_1 PF12729.2 gi|305664067|ref|YP_003860355.1| - 0.17 11.2 2.0 1.7 7.9 0.2 2.0 2 0 0 2 2 2 0 Four helix bundle sensory module for signal transduction SlyX PF04102.7 gi|305664067|ref|YP_003860355.1| - 0.2 12.0 2.3 3.7 7.9 0.1 2.4 2 0 0 2 2 2 0 SlyX MutS_IV PF05190.13 gi|305664067|ref|YP_003860355.1| - 0.23 11.6 4.0 4.6 7.4 1.7 2.2 2 0 0 2 2 2 0 MutS family domain IV Uds1 PF15456.1 gi|305664067|ref|YP_003860355.1| - 0.35 10.8 4.1 0.59 10.1 2.9 1.3 1 1 0 1 1 1 0 Up-regulated During Septation Tnp_P_element PF12017.3 gi|305664067|ref|YP_003860355.1| - 0.81 8.8 2.8 3.6 6.7 0.0 2.0 2 0 0 2 2 2 0 Transposase protein IncA PF04156.9 gi|305664067|ref|YP_003860355.1| - 0.94 9.0 7.2 2 7.9 5.0 1.5 1 1 0 1 1 1 0 IncA protein GAS PF13851.1 gi|305664067|ref|YP_003860355.1| - 1.4 8.1 7.4 1.6 7.8 2.6 1.9 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Prefoldin_2 PF01920.15 gi|305664067|ref|YP_003860355.1| - 1.6 8.5 6.6 12 5.6 1.4 2.1 1 1 1 2 2 2 0 Prefoldin subunit CarboxypepD_reg PF13620.1 gi|305664068|ref|YP_003860356.1| - 1.6e-07 31.2 0.7 7.5e-05 22.7 0.0 4.4 4 0 0 4 4 4 1 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|305664068|ref|YP_003860356.1| - 4.3e-06 26.6 0.1 2.6e-05 24.1 0.1 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4480) DUF4198 PF10670.4 gi|305664068|ref|YP_003860356.1| - 0.021 14.8 0.1 3.8 7.4 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4198) DUF3244 PF11589.3 gi|305664068|ref|YP_003860356.1| - 0.88 9.3 5.9 0.36 10.5 0.2 3.4 4 0 0 4 4 4 0 Domain of unknown function (DUF3244) T2SE PF00437.15 gi|305664069|ref|YP_003860357.1| - 1.9e-51 174.5 0.0 1.2e-50 172.0 0.0 2.1 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|305664069|ref|YP_003860357.1| - 5.5e-05 22.6 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|305664069|ref|YP_003860357.1| - 8.5e-05 22.8 0.0 0.00023 21.4 0.0 1.7 1 0 0 1 1 1 1 ABC transporter SRP54 PF00448.17 gi|305664069|ref|YP_003860357.1| - 0.019 14.4 0.7 0.034 13.6 0.2 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Miro PF08477.8 gi|305664069|ref|YP_003860357.1| - 0.041 14.3 0.0 0.24 11.8 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein AAA_23 PF13476.1 gi|305664069|ref|YP_003860357.1| - 0.044 14.0 0.5 0.044 14.0 0.3 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|305664069|ref|YP_003860357.1| - 0.05 12.6 0.0 0.27 10.3 0.0 2.0 2 0 0 2 2 2 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|305664069|ref|YP_003860357.1| - 0.086 12.3 0.1 0.24 10.8 0.1 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA PF00004.24 gi|305664069|ref|YP_003860357.1| - 0.14 12.3 0.3 0.8 9.9 0.0 2.4 3 0 0 3 3 2 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|305664069|ref|YP_003860357.1| - 0.19 11.6 0.0 0.47 10.4 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|305664069|ref|YP_003860357.1| - 0.21 11.1 0.1 0.38 10.3 0.1 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|305664069|ref|YP_003860357.1| - 0.34 10.6 3.7 0.69 9.6 0.7 2.5 2 1 1 3 3 3 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|305664069|ref|YP_003860357.1| - 0.36 11.6 2.1 1.3 9.8 0.0 2.8 3 1 0 3 3 3 0 AAA domain T2SF PF00482.18 gi|305664070|ref|YP_003860358.1| - 1.5e-12 47.5 5.0 2.4e-07 30.7 0.3 4.5 4 1 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|305664070|ref|YP_003860358.1| - 4 5.9 29.6 0.027 13.0 2.8 4.0 3 1 0 3 3 3 0 Predicted membrane protein (DUF2207) DUF3258 PF11646.3 gi|305664071|ref|YP_003860359.1| - 0.036 14.2 0.1 0.049 13.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF3258 Col_cuticle_N PF01484.12 gi|305664071|ref|YP_003860359.1| - 0.12 12.0 1.3 0.22 11.2 0.9 1.4 1 0 0 1 1 1 0 Nematode cuticle collagen N-terminal domain DUF1628 PF07790.6 gi|305664072|ref|YP_003860360.1| - 3.8e-05 24.3 1.0 0.00079 20.1 0.3 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Sigma_reg_N PF13800.1 gi|305664072|ref|YP_003860360.1| - 0.037 14.0 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 Sigma factor regulator N-terminal Kelch_6 PF13964.1 gi|305664074|ref|YP_003860362.1| - 1.8e-05 24.7 7.8 2.6 8.3 0.1 5.9 6 0 0 6 6 6 2 Kelch motif PQQ_2 PF13360.1 gi|305664074|ref|YP_003860362.1| - 0.027 13.9 0.2 9.3 5.6 0.0 3.1 3 1 1 4 4 4 0 PQQ-like domain PQQ_3 PF13570.1 gi|305664074|ref|YP_003860362.1| - 1.1 9.5 8.2 8.3 6.8 0.0 4.9 5 0 0 5 5 5 0 PQQ-like domain Abhydro_lipase PF04083.11 gi|305664078|ref|YP_003860366.1| - 0.0076 15.5 0.0 0.018 14.3 0.0 1.6 1 0 0 1 1 1 1 Partial alpha/beta-hydrolase lipase region LT-IIB PF06453.6 gi|305664078|ref|YP_003860366.1| - 0.018 14.7 0.3 0.057 13.1 0.2 1.9 1 0 0 1 1 1 0 Type II heat-labile enterotoxin , B subunit (LT-IIB) Adenylsucc_synt PF00709.16 gi|305664080|ref|YP_003860368.1| - 2.9e-73 246.9 0.0 7.4e-38 130.2 0.1 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase DAO PF01266.19 gi|305664081|ref|YP_003860369.1| - 2.5e-14 52.9 1.0 3.7e-06 26.1 0.3 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|305664081|ref|YP_003860369.1| - 4.1e-11 43.1 0.3 1.7e-05 24.7 0.2 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|305664081|ref|YP_003860369.1| - 1.5e-06 27.3 2.0 6e-06 25.3 0.1 2.4 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.17 gi|305664081|ref|YP_003860369.1| - 1.6e-06 27.2 2.3 0.0022 16.9 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|305664081|ref|YP_003860369.1| - 0.00016 21.6 2.1 0.0003 20.7 0.3 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|305664081|ref|YP_003860369.1| - 0.00024 20.2 0.1 0.00056 19.0 0.1 1.5 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|305664081|ref|YP_003860369.1| - 0.0012 17.4 0.0 0.0085 14.6 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|305664081|ref|YP_003860369.1| - 0.0017 17.4 0.4 0.024 13.6 0.1 2.7 4 0 0 4 4 4 1 FAD binding domain Trp_halogenase PF04820.9 gi|305664081|ref|YP_003860369.1| - 0.0019 16.9 0.1 0.0028 16.3 0.0 1.2 1 0 0 1 1 1 1 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|305664081|ref|YP_003860369.1| - 0.0044 15.9 0.0 0.0074 15.2 0.0 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|305664081|ref|YP_003860369.1| - 0.007 16.1 0.0 0.14 11.9 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|305664081|ref|YP_003860369.1| - 0.011 15.8 0.0 3.9 7.4 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|305664081|ref|YP_003860369.1| - 0.1 11.6 0.1 0.18 10.8 0.1 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox PF00070.22 gi|305664081|ref|YP_003860369.1| - 0.14 12.5 0.8 5.2 7.5 0.3 3.1 4 0 0 4 4 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|305664081|ref|YP_003860369.1| - 0.18 10.8 0.8 0.4 9.6 0.4 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase Glutaredoxin PF00462.19 gi|305664082|ref|YP_003860370.1| - 7.8e-05 22.5 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin DUF948 PF06103.6 gi|305664082|ref|YP_003860370.1| - 0.52 10.1 2.7 0.4 10.5 0.5 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Sigma_reg_N PF13800.1 gi|305664082|ref|YP_003860370.1| - 3.6 7.6 6.5 0.68 9.9 1.9 1.8 2 0 0 2 2 2 0 Sigma factor regulator N-terminal Arch_ATPase PF01637.13 gi|305664083|ref|YP_003860371.1| - 2.2e-49 168.2 0.1 2.8e-49 167.9 0.0 1.1 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305664083|ref|YP_003860371.1| - 1.1e-05 25.4 0.0 1.8e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.17 gi|305664083|ref|YP_003860371.1| - 9.3e-05 21.4 0.0 0.00014 20.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain AAA PF00004.24 gi|305664083|ref|YP_003860371.1| - 0.00032 20.9 0.0 0.00078 19.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|305664083|ref|YP_003860371.1| - 0.0035 17.2 0.0 0.0081 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|305664083|ref|YP_003860371.1| - 0.0054 16.3 0.0 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.1 gi|305664083|ref|YP_003860371.1| - 0.0058 16.7 0.0 0.011 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|305664083|ref|YP_003860371.1| - 0.0059 16.2 0.0 0.0091 15.5 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|305664083|ref|YP_003860371.1| - 0.0093 15.5 0.1 0.035 13.6 0.1 1.8 1 1 1 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|305664083|ref|YP_003860371.1| - 0.011 15.8 0.0 0.022 14.9 0.0 1.6 2 0 0 2 2 1 0 RNA helicase AAA_17 PF13207.1 gi|305664083|ref|YP_003860371.1| - 0.014 16.2 0.2 0.036 14.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|305664083|ref|YP_003860371.1| - 0.021 13.9 0.0 0.039 13.0 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_23 PF13476.1 gi|305664083|ref|YP_003860371.1| - 0.045 14.0 0.0 0.087 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|305664083|ref|YP_003860371.1| - 0.046 13.6 0.2 0.15 11.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|305664083|ref|YP_003860371.1| - 0.047 12.6 0.0 0.068 12.1 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain Bac_DnaA PF00308.13 gi|305664083|ref|YP_003860371.1| - 0.058 13.0 0.1 0.15 11.6 0.0 1.6 1 1 0 1 1 1 0 Bacterial dnaA protein AChE_tetra PF08674.5 gi|305664083|ref|YP_003860371.1| - 0.095 12.2 0.6 0.22 11.0 0.4 1.6 1 0 0 1 1 1 0 Acetylcholinesterase tetramerisation domain DAP3 PF10236.4 gi|305664083|ref|YP_003860371.1| - 0.11 11.3 0.0 0.21 10.4 0.0 1.5 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 MobB PF03205.9 gi|305664083|ref|YP_003860371.1| - 0.13 11.9 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|305664083|ref|YP_003860371.1| - 0.15 11.7 0.0 0.54 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_35 PF14516.1 gi|305664083|ref|YP_003860371.1| - 0.16 10.6 0.0 0.23 10.0 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain DUF86 PF01934.12 gi|305664084|ref|YP_003860372.1| - 8.9e-20 70.5 0.3 1.9e-19 69.4 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTP_transf_2 PF01909.18 gi|305664084|ref|YP_003860372.1| - 0.0054 17.0 0.7 0.016 15.5 0.4 1.8 1 1 0 1 1 1 1 Nucleotidyltransferase domain Arch_ATPase PF01637.13 gi|305664085|ref|YP_003860373.1| - 7.9e-54 182.8 0.0 1.2e-53 182.1 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305664085|ref|YP_003860373.1| - 4.3e-05 23.5 0.0 0.00011 22.3 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|305664085|ref|YP_003860373.1| - 4.8e-05 22.3 0.0 7.2e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain KAP_NTPase PF07693.9 gi|305664085|ref|YP_003860373.1| - 0.005 15.8 0.0 0.007 15.3 0.0 1.2 1 0 0 1 1 1 1 KAP family P-loop domain PhoH PF02562.11 gi|305664085|ref|YP_003860373.1| - 0.0051 16.0 0.1 0.15 11.2 0.0 2.2 2 0 0 2 2 2 1 PhoH-like protein Mg_chelatase PF01078.16 gi|305664085|ref|YP_003860373.1| - 0.0086 15.2 0.0 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.1 gi|305664085|ref|YP_003860373.1| - 0.013 15.1 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|305664085|ref|YP_003860373.1| - 0.027 15.2 0.2 0.17 12.6 0.2 2.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305664085|ref|YP_003860373.1| - 0.027 14.6 0.0 0.062 13.4 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DAP3 PF10236.4 gi|305664085|ref|YP_003860373.1| - 0.035 13.0 0.0 0.063 12.1 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_14 PF13173.1 gi|305664085|ref|YP_003860373.1| - 0.036 13.9 0.1 0.11 12.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.15 gi|305664085|ref|YP_003860373.1| - 0.04 12.5 0.0 0.057 12.0 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit RNA_helicase PF00910.17 gi|305664085|ref|YP_003860373.1| - 0.059 13.5 0.0 0.14 12.3 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|305664085|ref|YP_003860373.1| - 0.074 12.6 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|305664085|ref|YP_003860373.1| - 0.079 13.1 0.0 0.2 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|305664085|ref|YP_003860373.1| - 0.099 11.3 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_23 PF13476.1 gi|305664085|ref|YP_003860373.1| - 0.17 12.1 0.0 0.33 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|305664086|ref|YP_003860374.1| - 2e-51 174.9 0.1 2.9e-51 174.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_16 PF13191.1 gi|305664086|ref|YP_003860374.1| - 3.7e-05 23.7 0.0 6.6e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|305664086|ref|YP_003860374.1| - 4.8e-05 23.5 0.1 0.00019 21.6 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305664086|ref|YP_003860374.1| - 6.2e-05 23.8 2.1 0.00016 22.4 0.2 2.5 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|305664086|ref|YP_003860374.1| - 6.5e-05 23.0 0.0 0.00014 22.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|305664086|ref|YP_003860374.1| - 0.00034 20.2 0.3 0.0071 15.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|305664086|ref|YP_003860374.1| - 0.0015 18.8 0.0 0.0043 17.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|305664086|ref|YP_003860374.1| - 0.0017 17.2 0.0 0.0063 15.4 0.0 1.8 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.1 gi|305664086|ref|YP_003860374.1| - 0.0023 17.8 0.2 0.0079 16.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|305664086|ref|YP_003860374.1| - 0.0069 16.6 0.4 0.051 13.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|305664086|ref|YP_003860374.1| - 0.0082 16.3 0.0 0.024 14.7 0.0 1.8 2 0 0 2 2 1 1 RNA helicase AAA_30 PF13604.1 gi|305664086|ref|YP_003860374.1| - 0.017 14.6 0.0 0.027 14.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|305664086|ref|YP_003860374.1| - 0.026 13.6 0.0 0.05 12.7 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|305664086|ref|YP_003860374.1| - 0.056 13.3 0.0 0.1 12.4 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|305664086|ref|YP_003860374.1| - 0.058 13.3 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.12 gi|305664086|ref|YP_003860374.1| - 0.062 12.8 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DAP3 PF10236.4 gi|305664086|ref|YP_003860374.1| - 0.08 11.8 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_PrkA PF08298.6 gi|305664086|ref|YP_003860374.1| - 0.098 11.3 0.0 0.16 10.6 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_25 PF13481.1 gi|305664086|ref|YP_003860374.1| - 0.14 11.4 0.0 0.55 9.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain Asp_protease_2 PF13650.1 gi|305664087|ref|YP_003860375.1| - 0.0001 22.7 0.0 0.00059 20.2 0.0 1.9 2 0 0 2 2 2 1 Aspartyl protease RVP PF00077.15 gi|305664087|ref|YP_003860375.1| - 0.0008 19.2 0.0 0.001 18.9 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|305664087|ref|YP_003860375.1| - 0.033 14.0 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease DUF104 PF01954.11 gi|305664088|ref|YP_003860376.1| - 1.4e-19 69.8 3.3 1.6e-19 69.7 2.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF104 Aminotran_3 PF00202.16 gi|305664089|ref|YP_003860377.1| - 6.3e-60 202.8 0.0 7.7e-60 202.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|305664089|ref|YP_003860377.1| - 0.0083 15.1 0.0 3.3 6.5 0.0 2.3 2 0 0 2 2 2 2 Aminotransferase class I and II DUF4070 PF13282.1 gi|305664089|ref|YP_003860377.1| - 0.12 11.9 3.7 2.8 7.4 0.4 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4070) Glyco_hydro_4 PF02056.11 gi|305664089|ref|YP_003860377.1| - 0.13 11.5 0.0 0.23 10.7 0.0 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase Gp_dh_N PF00044.19 gi|305664090|ref|YP_003860378.1| - 0.00022 21.2 0.8 0.0024 17.8 0.4 2.3 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|305664090|ref|YP_003860378.1| - 0.027 14.9 0.8 0.16 12.4 0.4 2.6 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|305664090|ref|YP_003860378.1| - 0.067 12.3 0.4 0.15 11.1 0.3 1.6 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PAP2 PF01569.16 gi|305664091|ref|YP_003860379.1| - 5.3e-19 68.1 2.5 5.3e-19 68.1 1.7 3.0 2 1 2 4 4 4 1 PAP2 superfamily PAP2_3 PF14378.1 gi|305664091|ref|YP_003860379.1| - 0.005 16.3 0.0 0.005 16.3 0.0 2.3 3 1 0 3 3 3 1 PAP2 superfamily 3H PF02829.9 gi|305664092|ref|YP_003860380.1| - 0.079 12.9 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 3H domain MFS_1 PF07690.11 gi|305664093|ref|YP_003860381.1| - 0.00019 20.3 46.7 0.00081 18.1 14.0 2.5 1 1 1 2 2 2 2 Major Facilitator Superfamily Glyoxalase_4 PF13669.1 gi|305664094|ref|YP_003860382.1| - 6.4e-25 87.2 0.0 8.2e-25 86.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|305664094|ref|YP_003860382.1| - 1.5e-06 28.7 0.0 1.8e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|305664094|ref|YP_003860382.1| - 0.0055 16.6 0.0 0.013 15.5 0.0 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|305664094|ref|YP_003860382.1| - 0.026 14.4 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Glyoxalase-like domain AIRC PF00731.15 gi|305664095|ref|YP_003860383.1| - 1.3e-23 82.9 4.4 2e-23 82.3 3.1 1.2 1 0 0 1 1 1 1 AIR carboxylase STAS PF01740.16 gi|305664095|ref|YP_003860383.1| - 0.037 13.4 0.7 3.7 6.9 0.1 2.3 2 0 0 2 2 2 0 STAS domain NAD_kinase PF01513.16 gi|305664095|ref|YP_003860383.1| - 0.045 12.5 0.1 0.068 11.9 0.1 1.3 1 0 0 1 1 1 0 ATP-NAD kinase HATPase_c PF02518.21 gi|305664095|ref|YP_003860383.1| - 0.083 12.6 0.1 0.16 11.6 0.0 1.7 1 1 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Succ_CoA_lig PF13607.1 gi|305664095|ref|YP_003860383.1| - 0.13 11.9 0.7 0.24 10.9 0.1 1.7 2 0 0 2 2 2 0 Succinyl-CoA ligase like flavodoxin domain Fe-ADH PF00465.14 gi|305664095|ref|YP_003860383.1| - 0.39 9.2 4.5 0.11 11.1 0.5 1.8 2 1 1 3 3 3 0 Iron-containing alcohol dehydrogenase DUF111 PF01969.12 gi|305664096|ref|YP_003860384.1| - 7e-111 370.7 0.0 7.9e-111 370.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Flavi_DEAD PF07652.9 gi|305664096|ref|YP_003860384.1| - 0.15 11.7 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Flavivirus DEAD domain DUF362 PF04015.7 gi|305664097|ref|YP_003860385.1| - 2.2e-36 125.2 0.0 2.7e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF362) LacAB_rpiB PF02502.13 gi|305664098|ref|YP_003860386.1| - 1.1e-37 128.8 0.0 1.3e-37 128.5 0.0 1.0 1 0 0 1 1 1 1 Ribose/Galactose Isomerase MethyltransfD12 PF02086.10 gi|305664099|ref|YP_003860387.1| - 0.038 13.4 0.1 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase PALP PF00291.20 gi|305664101|ref|YP_003860389.1| - 4.3e-44 150.9 0.0 5.5e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Aldo_ket_red PF00248.16 gi|305664102|ref|YP_003860390.1| - 7.8e-70 234.8 0.0 8.9e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Inositol_P PF00459.20 gi|305664103|ref|YP_003860391.1| - 1.6e-17 63.7 0.0 1.5e-16 60.5 0.0 1.9 1 1 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|305664103|ref|YP_003860391.1| - 9.1e-08 31.2 0.0 1.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Marek_SORF3 PF07153.6 gi|305664103|ref|YP_003860391.1| - 0.024 13.3 0.1 0.87 8.1 0.0 2.1 2 0 0 2 2 2 0 Marek's disease-like virus SORF3 protein Chromate_transp PF02417.10 gi|305664104|ref|YP_003860392.1| - 1.3e-53 181.0 20.0 1.5e-53 180.8 13.9 1.0 1 0 0 1 1 1 1 Chromate transporter GPI2 PF06432.6 gi|305664104|ref|YP_003860392.1| - 1.2 8.4 5.5 2.2 7.5 3.8 1.4 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase PALP PF00291.20 gi|305664105|ref|YP_003860393.1| - 1e-39 136.5 0.0 1.4e-39 136.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF1971 PF09313.6 gi|305664105|ref|YP_003860393.1| - 0.058 13.1 0.1 0.19 11.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1971) Trp_syntA PF00290.15 gi|305664106|ref|YP_003860394.1| - 1.4e-33 115.5 0.2 1.7e-33 115.2 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Ribul_P_3_epim PF00834.14 gi|305664106|ref|YP_003860394.1| - 0.0015 17.7 0.1 0.0025 16.9 0.1 1.4 1 1 0 1 1 1 1 Ribulose-phosphate 3 epimerase family His_biosynth PF00977.16 gi|305664106|ref|YP_003860394.1| - 0.016 14.5 0.8 0.029 13.6 0.1 1.7 2 0 0 2 2 2 0 Histidine biosynthesis protein PcrB PF01884.12 gi|305664106|ref|YP_003860394.1| - 0.036 13.3 1.3 0.058 12.6 0.0 1.9 2 1 0 2 2 2 0 PcrB family Glycos_transf_3 PF00591.16 gi|305664107|ref|YP_003860395.1| - 1.5e-74 250.5 0.0 1.9e-74 250.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|305664107|ref|YP_003860395.1| - 2.2e-19 68.7 0.0 4.4e-19 67.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain RMMBL PF07521.7 gi|305664107|ref|YP_003860395.1| - 0.1 12.4 0.0 0.3 10.9 0.0 1.9 1 0 0 1 1 1 0 RNA-metabolising metallo-beta-lactamase PRAI PF00697.17 gi|305664108|ref|YP_003860396.1| - 2e-27 96.0 0.0 2.3e-27 95.8 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Chorismate_bind PF00425.13 gi|305664109|ref|YP_003860397.1| - 7.2e-88 294.2 0.0 9.5e-88 293.8 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|305664109|ref|YP_003860397.1| - 2.3e-07 30.8 0.2 4.5e-07 29.9 0.2 1.5 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|305664110|ref|YP_003860398.1| - 3.1e-50 170.2 0.0 3.8e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|305664110|ref|YP_003860398.1| - 1.6e-11 44.0 0.1 4.3e-11 42.6 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.14 gi|305664110|ref|YP_003860398.1| - 0.063 12.8 0.1 0.083 12.5 0.1 1.3 1 1 0 1 1 1 0 SNO glutamine amidotransferase family IGPS PF00218.16 gi|305664111|ref|YP_003860399.1| - 1.4e-68 230.6 0.1 1.8e-68 230.3 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|305664111|ref|YP_003860399.1| - 2.5e-05 23.2 0.0 0.00031 19.6 0.0 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase NanE PF04131.9 gi|305664111|ref|YP_003860399.1| - 6.4e-05 21.9 0.5 0.00011 21.2 0.3 1.5 1 0 0 1 1 1 1 Putative N-acetylmannosamine-6-phosphate epimerase QRPTase_C PF01729.14 gi|305664111|ref|YP_003860399.1| - 0.0021 17.6 1.4 0.0039 16.7 0.7 1.5 1 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.16 gi|305664111|ref|YP_003860399.1| - 0.0038 16.5 0.2 0.019 14.2 0.0 2.0 1 1 0 2 2 2 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|305664111|ref|YP_003860399.1| - 0.0047 15.9 1.0 0.0062 15.5 0.7 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase PI3K_rbd PF00794.13 gi|305664111|ref|YP_003860399.1| - 0.12 12.3 0.1 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 PI3-kinase family, ras-binding domain Asp_protease_2 PF13650.1 gi|305664112|ref|YP_003860400.1| - 5.6e-06 26.7 0.0 6.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|305664112|ref|YP_003860400.1| - 1.9e-05 24.3 0.0 2.5e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease PIN PF01850.16 gi|305664114|ref|YP_003860402.1| - 2e-14 53.9 0.5 2.5e-14 53.6 0.4 1.1 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.4 gi|305664114|ref|YP_003860402.1| - 0.003 17.6 0.2 0.0038 17.2 0.2 1.1 1 0 0 1 1 1 1 PIN domain Minor_capsid_3 PF12691.2 gi|305664115|ref|YP_003860403.1| - 0.028 14.1 0.1 0.034 13.8 0.1 1.1 1 0 0 1 1 1 0 Minor capsid protein from bacteriophage Laminin_I PF06008.9 gi|305664115|ref|YP_003860403.1| - 0.052 12.8 0.0 0.056 12.7 0.0 1.0 1 0 0 1 1 1 0 Laminin Domain I HPS3_N PF14761.1 gi|305664115|ref|YP_003860403.1| - 0.082 12.3 0.0 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 3 Pox_H7 PF04787.7 gi|305664115|ref|YP_003860403.1| - 0.088 12.6 0.2 0.092 12.5 0.1 1.1 1 0 0 1 1 1 0 Late protein H7 Aconitase_C PF00694.14 gi|305664116|ref|YP_003860404.1| - 7.7e-21 74.5 0.0 1.4e-20 73.7 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase_2_N PF06434.8 gi|305664116|ref|YP_003860404.1| - 0.00075 18.9 0.6 0.045 13.1 0.4 2.2 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Aconitase PF00330.15 gi|305664117|ref|YP_003860405.1| - 1.2e-67 228.4 1.9 3.4e-42 144.5 0.1 2.4 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|305664117|ref|YP_003860405.1| - 0.0017 16.9 0.0 0.0027 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Peptidase_S32 PF05579.8 gi|305664117|ref|YP_003860405.1| - 0.0092 14.9 0.0 0.021 13.8 0.0 1.5 1 0 0 1 1 1 1 Equine arteritis virus serine endopeptidase S32 Transketolase_N PF00456.16 gi|305664118|ref|YP_003860406.1| - 1e-51 175.7 0.1 3.1e-51 174.1 0.0 1.6 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain DXP_synthase_N PF13292.1 gi|305664118|ref|YP_003860406.1| - 5e-10 38.7 0.2 2.1e-06 26.8 0.4 3.1 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.15 gi|305664118|ref|YP_003860406.1| - 5.4e-09 35.1 0.0 7.6e-09 34.7 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component TPP_enzyme_C PF02775.16 gi|305664118|ref|YP_003860406.1| - 7e-08 32.1 0.0 1.6e-06 27.8 0.0 2.6 1 1 1 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VWA_2 PF13519.1 gi|305664118|ref|YP_003860406.1| - 0.042 13.9 0.0 0.063 13.3 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Transket_pyr PF02779.19 gi|305664119|ref|YP_003860407.1| - 4.9e-38 130.3 0.0 9e-38 129.5 0.0 1.4 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|305664119|ref|YP_003860407.1| - 4.2e-29 101.0 0.3 4.2e-29 101.0 0.2 1.9 3 0 0 3 3 3 1 Transketolase, C-terminal domain PDH PF02153.12 gi|305664120|ref|YP_003860408.1| - 2.7e-18 65.7 0.0 4.9e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.16 gi|305664120|ref|YP_003860408.1| - 9.4e-15 54.4 2.6 1.9e-14 53.4 1.8 1.6 1 0 0 1 1 1 1 Chorismate mutase type II F420_oxidored PF03807.12 gi|305664120|ref|YP_003860408.1| - 8.7e-14 51.7 0.0 2.2e-13 50.4 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|305664120|ref|YP_003860408.1| - 1.4e-07 31.5 0.0 2.8e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|305664120|ref|YP_003860408.1| - 0.00013 21.4 0.0 0.00019 20.8 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain Shikimate_DH PF01488.15 gi|305664120|ref|YP_003860408.1| - 0.00025 21.1 0.1 0.00075 19.6 0.0 1.9 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|305664120|ref|YP_003860408.1| - 0.00026 20.7 0.0 0.014 15.0 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|305664120|ref|YP_003860408.1| - 0.0022 17.1 0.0 0.0038 16.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AdoHcyase_NAD PF00670.16 gi|305664120|ref|YP_003860408.1| - 0.033 14.0 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain DUF2621 PF11084.3 gi|305664120|ref|YP_003860408.1| - 0.035 13.7 0.5 0.83 9.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2621) NAD_Gly3P_dh_N PF01210.18 gi|305664120|ref|YP_003860408.1| - 0.037 13.7 0.0 0.44 10.2 0.0 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|305664120|ref|YP_003860408.1| - 0.06 13.3 0.2 0.21 11.5 0.1 2.0 2 0 0 2 2 2 0 TrkA-N domain Crust_neuro_H PF03858.8 gi|305664120|ref|YP_003860408.1| - 0.078 13.5 0.6 0.21 12.2 0.4 1.7 1 0 0 1 1 1 0 Crustacean neurohormone H OCD_Mu_crystall PF02423.10 gi|305664120|ref|YP_003860408.1| - 0.11 11.3 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family DAHP_synth_1 PF00793.15 gi|305664121|ref|YP_003860409.1| - 4.8e-75 251.7 0.0 6.1e-75 251.4 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.9 gi|305664121|ref|YP_003860409.1| - 5.5e-07 28.9 0.0 0.00043 19.5 0.0 2.2 2 0 0 2 2 2 2 NeuB family ComA PF02679.10 gi|305664121|ref|YP_003860409.1| - 0.058 12.3 0.0 0.26 10.2 0.0 2.1 2 1 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) DHQ_synthase PF01761.15 gi|305664122|ref|YP_003860410.1| - 1.9e-90 302.3 0.1 2.4e-90 302.0 0.0 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH PF00465.14 gi|305664122|ref|YP_003860410.1| - 6.4e-15 54.6 0.0 4e-10 38.8 0.0 2.3 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|305664122|ref|YP_003860410.1| - 8.3e-10 38.3 0.1 4.6e-09 35.9 0.0 2.0 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase Shikimate_dh_N PF08501.6 gi|305664123|ref|YP_003860411.1| - 1.1e-21 76.6 0.0 2.7e-21 75.3 0.0 1.7 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|305664123|ref|YP_003860411.1| - 8.9e-10 38.7 0.0 1.4e-09 38.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase ApbA PF02558.11 gi|305664123|ref|YP_003860411.1| - 0.025 13.9 0.0 0.038 13.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AdoHcyase_NAD PF00670.16 gi|305664123|ref|YP_003860411.1| - 0.031 14.0 0.0 0.055 13.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|305664123|ref|YP_003860411.1| - 0.11 12.7 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|305664123|ref|YP_003860411.1| - 0.13 11.6 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Chorismate_synt PF01264.16 gi|305664124|ref|YP_003860412.1| - 5.8e-131 436.0 0.0 6.6e-131 435.8 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase GHMP_kinases_N PF00288.21 gi|305664125|ref|YP_003860413.1| - 2.2e-10 40.4 0.7 8.1e-10 38.6 0.4 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|305664125|ref|YP_003860413.1| - 4.5e-05 23.5 0.3 0.0002 21.5 0.1 2.1 2 1 0 2 2 2 1 GHMP kinases C terminal PSK_trans_fac PF07704.6 gi|305664125|ref|YP_003860413.1| - 0.092 13.4 0.0 0.17 12.5 0.0 1.4 1 0 0 1 1 1 0 Rv0623-like transcription factor EPSP_synthase PF00275.15 gi|305664126|ref|YP_003860414.1| - 1.3e-68 231.3 0.0 1.5e-68 231.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DHquinase_I PF01487.10 gi|305664127|ref|YP_003860415.1| - 1.8e-13 50.7 0.1 1.7e-12 47.4 0.0 2.1 1 1 0 1 1 1 1 Type I 3-dehydroquinase Pyr_redox_2 PF07992.9 gi|305664128|ref|YP_003860416.1| - 1.7e-25 90.0 1.8 2.3e-25 89.6 1.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|305664128|ref|YP_003860416.1| - 1.3e-10 40.6 4.9 5.8e-06 25.4 1.7 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|305664128|ref|YP_003860416.1| - 8.2e-08 31.4 5.3 3.9e-06 25.9 1.7 2.9 2 1 1 3 3 3 2 FAD binding domain GIDA PF01134.17 gi|305664128|ref|YP_003860416.1| - 2.9e-06 26.4 8.0 7.2e-06 25.1 1.4 2.9 2 1 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|305664128|ref|YP_003860416.1| - 6.6e-06 26.3 0.2 0.0022 18.0 0.0 2.3 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|305664128|ref|YP_003860416.1| - 8e-06 25.1 1.0 8e-06 25.1 0.7 2.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|305664128|ref|YP_003860416.1| - 8e-05 21.8 1.3 0.00022 20.4 0.5 2.0 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.7 gi|305664128|ref|YP_003860416.1| - 0.001 18.0 0.5 0.0086 15.0 0.2 2.1 1 1 0 2 2 2 1 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|305664128|ref|YP_003860416.1| - 0.0019 18.2 0.5 0.0037 17.2 0.3 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|305664128|ref|YP_003860416.1| - 0.0021 16.5 1.9 0.017 13.5 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|305664128|ref|YP_003860416.1| - 0.0042 16.1 0.3 0.0069 15.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.1 gi|305664128|ref|YP_003860416.1| - 0.015 15.0 2.6 0.26 11.0 0.0 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|305664128|ref|YP_003860416.1| - 0.018 13.7 0.9 0.029 13.0 0.6 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|305664128|ref|YP_003860416.1| - 0.16 12.3 2.7 1.2 9.6 0.5 2.8 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CPSase_L_D2 PF02786.12 gi|305664129|ref|YP_003860417.1| - 6.4e-95 316.4 0.0 3.1e-62 209.6 0.0 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.14 gi|305664129|ref|YP_003860417.1| - 3.5e-37 126.9 0.0 1.3e-36 125.0 0.0 2.1 2 0 0 2 2 2 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CPSase_L_chain PF00289.17 gi|305664129|ref|YP_003860417.1| - 3.7e-36 123.5 0.1 5.8e-19 68.2 0.0 2.9 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|305664129|ref|YP_003860417.1| - 1.3e-27 96.6 0.0 1.2e-13 51.1 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|305664129|ref|YP_003860417.1| - 1e-16 60.6 0.0 3.8e-05 22.6 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|305664129|ref|YP_003860417.1| - 1.2e-15 57.3 0.0 2.1e-07 30.4 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|305664129|ref|YP_003860417.1| - 4.1e-12 45.9 0.0 4e-07 29.6 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|305664129|ref|YP_003860417.1| - 2.2e-07 30.5 0.0 0.0026 17.2 0.0 2.7 2 1 0 2 2 2 2 RimK-like ATP-grasp domain GARS_A PF01071.14 gi|305664129|ref|YP_003860417.1| - 4.4e-06 26.4 0.0 0.0055 16.2 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.1 gi|305664129|ref|YP_003860417.1| - 1.5e-05 24.3 0.0 0.077 12.1 0.0 2.8 3 0 0 3 3 3 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305664129|ref|YP_003860417.1| - 0.035 13.9 0.2 2.2 8.1 0.0 2.6 2 0 0 2 2 2 0 ATP-grasp domain UPF0180 PF03698.8 gi|305664129|ref|YP_003860417.1| - 0.046 13.5 0.1 0.4 10.5 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) CPSase_sm_chain PF00988.17 gi|305664130|ref|YP_003860418.1| - 8.3e-45 151.4 0.0 1.2e-44 151.0 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|305664130|ref|YP_003860418.1| - 6.3e-41 139.9 0.0 8.6e-41 139.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|305664130|ref|YP_003860418.1| - 2e-10 40.4 0.1 1.1e-06 28.3 0.0 2.3 1 1 1 2 2 2 2 Peptidase C26 GATase_3 PF07685.9 gi|305664130|ref|YP_003860418.1| - 0.11 12.0 0.1 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Lyase_1 PF00206.15 gi|305664131|ref|YP_003860419.1| - 5.2e-23 81.7 0.0 8.9e-23 80.9 0.0 1.4 1 0 0 1 1 1 1 Lyase UDPG_MGDP_dh PF00984.14 gi|305664131|ref|YP_003860419.1| - 0.11 12.7 0.2 0.39 10.9 0.0 2.1 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, central domain Arginosuc_synth PF00764.14 gi|305664132|ref|YP_003860420.1| - 1.5e-158 527.9 0.1 1.8e-158 527.6 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|305664132|ref|YP_003860420.1| - 1.9e-08 34.1 0.0 2.7e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|305664132|ref|YP_003860420.1| - 1.8e-05 24.1 0.1 5.2e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|305664132|ref|YP_003860420.1| - 0.00071 18.2 0.0 0.0014 17.3 0.0 1.5 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|305664132|ref|YP_003860420.1| - 0.056 12.9 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 PP-loop family ACT_7 PF13840.1 gi|305664133|ref|YP_003860421.1| - 8.6e-10 38.0 0.7 1.6e-09 37.1 0.5 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|305664133|ref|YP_003860421.1| - 8.1e-06 25.1 0.3 6.1e-05 22.4 0.1 2.5 3 0 0 3 3 3 1 ACT domain tRNA_synt_1c_R1 PF04558.10 gi|305664133|ref|YP_003860421.1| - 0.021 14.3 0.6 0.04 13.4 0.1 1.7 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Herpes_US9 PF06072.6 gi|305664133|ref|YP_003860421.1| - 0.068 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Alphaherpesvirus tegument protein US9 BPD_transp_2 PF02653.11 gi|305664134|ref|YP_003860422.1| - 6.3e-35 120.4 36.7 7.6e-35 120.1 25.4 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component Coa1 PF08695.5 gi|305664134|ref|YP_003860422.1| - 0.016 14.7 0.1 0.038 13.5 0.1 1.6 1 0 0 1 1 1 0 Cytochrome oxidase complex assembly protein 1 FixQ PF05545.6 gi|305664134|ref|YP_003860422.1| - 2.4 7.8 6.3 5 6.8 0.1 2.9 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ BPD_transp_2 PF02653.11 gi|305664135|ref|YP_003860423.1| - 4e-28 98.1 41.7 4.8e-28 97.8 28.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component ANF_receptor PF01094.23 gi|305664136|ref|YP_003860424.1| - 1.9e-30 105.8 0.0 3e-30 105.1 0.0 1.3 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_6 PF13458.1 gi|305664136|ref|YP_003860424.1| - 1.1e-28 100.6 1.0 1.5e-28 100.1 0.7 1.2 1 0 0 1 1 1 1 Periplasmic binding protein LppC PF04348.8 gi|305664136|ref|YP_003860424.1| - 1.2e-10 40.5 0.1 1.6e-10 40.1 0.0 1.1 1 0 0 1 1 1 1 LppC putative lipoprotein Peripla_BP_5 PF13433.1 gi|305664136|ref|YP_003860424.1| - 1.9e-08 33.4 0.0 3e-06 26.2 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain PrpR_N PF06506.6 gi|305664136|ref|YP_003860424.1| - 0.069 12.5 0.1 0.21 10.9 0.0 1.8 2 0 0 2 2 2 0 Propionate catabolism activator ABC_tran PF00005.22 gi|305664137|ref|YP_003860425.1| - 7.8e-25 87.7 0.0 1e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|305664137|ref|YP_003860425.1| - 5.7e-10 38.6 0.1 1e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|305664137|ref|YP_003860425.1| - 2.3e-07 31.0 0.7 1.9e-05 24.8 0.5 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|305664137|ref|YP_003860425.1| - 7e-06 26.5 0.3 1.1e-05 25.8 0.2 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305664137|ref|YP_003860425.1| - 8.1e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|305664137|ref|YP_003860425.1| - 0.0036 16.4 0.1 0.0055 15.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|305664137|ref|YP_003860425.1| - 0.0052 15.9 0.0 0.0081 15.2 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin Arch_ATPase PF01637.13 gi|305664137|ref|YP_003860425.1| - 0.018 14.7 0.1 0.032 13.9 0.1 1.4 1 1 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|305664137|ref|YP_003860425.1| - 0.022 14.4 0.1 0.045 13.5 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain T2SE PF00437.15 gi|305664137|ref|YP_003860425.1| - 0.023 13.5 0.1 0.04 12.8 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.1 gi|305664137|ref|YP_003860425.1| - 0.046 13.6 0.0 0.091 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|305664137|ref|YP_003860425.1| - 0.049 13.7 0.1 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|305664137|ref|YP_003860425.1| - 0.058 12.4 0.1 0.1 11.6 0.1 1.4 1 0 0 1 1 1 0 AAA ATPase domain SMC_N PF02463.14 gi|305664137|ref|YP_003860425.1| - 0.069 12.3 0.1 0.15 11.2 0.0 1.5 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|305664137|ref|YP_003860425.1| - 0.078 12.8 0.1 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305664137|ref|YP_003860425.1| - 0.081 13.1 0.1 0.15 12.3 0.1 1.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|305664137|ref|YP_003860425.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|305664137|ref|YP_003860425.1| - 0.14 11.5 0.9 0.21 11.0 0.2 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|305664137|ref|YP_003860425.1| - 0.16 11.3 0.1 0.31 10.4 0.1 1.4 1 0 0 1 1 1 0 AAA-like domain ABC_tran PF00005.22 gi|305664138|ref|YP_003860426.1| - 5.7e-33 114.1 0.0 8.2e-33 113.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664138|ref|YP_003860426.1| - 6.1e-14 52.6 3.5 8.3e-12 45.6 2.4 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305664138|ref|YP_003860426.1| - 4.1e-10 39.2 0.6 0.00052 19.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|305664138|ref|YP_003860426.1| - 1.4e-07 32.0 0.8 2.7e-07 31.1 0.5 1.4 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|305664138|ref|YP_003860426.1| - 1.2e-05 24.5 0.5 0.00038 19.6 0.3 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|305664138|ref|YP_003860426.1| - 1.3e-05 24.5 0.1 2.6e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305664138|ref|YP_003860426.1| - 1.6e-05 25.0 0.0 2.4e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305664138|ref|YP_003860426.1| - 2.2e-05 24.5 0.4 0.054 13.6 0.0 2.2 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|305664138|ref|YP_003860426.1| - 0.00025 20.2 0.0 0.00038 19.6 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|305664138|ref|YP_003860426.1| - 0.00098 17.8 0.9 0.039 12.5 0.0 2.2 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|305664138|ref|YP_003860426.1| - 0.0037 16.7 0.6 0.0073 15.7 0.2 1.7 1 1 1 2 2 2 1 AAA-like domain AAA_14 PF13173.1 gi|305664138|ref|YP_003860426.1| - 0.0057 16.5 0.1 0.083 12.7 0.0 2.3 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.18 gi|305664138|ref|YP_003860426.1| - 0.012 15.5 1.0 0.024 14.6 0.7 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Dynamin_N PF00350.18 gi|305664138|ref|YP_003860426.1| - 0.018 14.8 0.0 0.028 14.2 0.0 1.5 1 1 0 1 1 1 0 Dynamin family AAA_25 PF13481.1 gi|305664138|ref|YP_003860426.1| - 0.02 14.3 0.6 0.089 12.1 0.4 2.1 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|305664138|ref|YP_003860426.1| - 0.022 13.2 0.3 0.041 12.3 0.1 1.5 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|305664138|ref|YP_003860426.1| - 0.051 14.3 0.9 0.11 13.3 0.6 1.8 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|305664138|ref|YP_003860426.1| - 0.057 12.9 0.1 0.24 10.9 0.0 2.0 2 1 1 3 3 3 0 AAA domain cobW PF02492.14 gi|305664138|ref|YP_003860426.1| - 0.062 12.7 0.1 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MutS_V PF00488.16 gi|305664138|ref|YP_003860426.1| - 0.064 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 MutS domain V SbcCD_C PF13558.1 gi|305664138|ref|YP_003860426.1| - 0.07 13.0 0.0 0.18 11.7 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Arch_ATPase PF01637.13 gi|305664138|ref|YP_003860426.1| - 0.083 12.5 0.2 0.14 11.8 0.1 1.7 1 1 0 1 1 1 0 Archaeal ATPase NACHT PF05729.7 gi|305664138|ref|YP_003860426.1| - 0.089 12.4 0.1 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 NACHT domain NUC130_3NT PF08158.7 gi|305664138|ref|YP_003860426.1| - 0.094 13.0 0.1 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 NUC130/3NT domain AAA_19 PF13245.1 gi|305664138|ref|YP_003860426.1| - 0.13 12.0 0.2 0.32 10.7 0.1 1.9 1 1 0 1 1 1 0 Part of AAA domain MobB PF03205.9 gi|305664138|ref|YP_003860426.1| - 0.14 11.8 0.1 0.28 10.8 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Peptidase_M20 PF01546.23 gi|305664139|ref|YP_003860427.1| - 1.7e-21 76.6 0.0 2.3e-21 76.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|305664139|ref|YP_003860427.1| - 1.2e-05 24.9 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|305664139|ref|YP_003860427.1| - 0.032 13.9 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase family M28 Aminotran_3 PF00202.16 gi|305664140|ref|YP_003860428.1| - 9.3e-94 314.0 0.0 1.2e-93 313.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III RimK PF08443.6 gi|305664141|ref|YP_003860429.1| - 1.2e-53 181.4 0.2 4.4e-53 179.5 0.0 1.8 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|305664141|ref|YP_003860429.1| - 1.6e-10 41.0 0.0 2.3e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|305664141|ref|YP_003860429.1| - 2.8e-09 37.0 0.0 4.9e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|305664141|ref|YP_003860429.1| - 5.3e-07 28.6 0.0 8.7e-07 27.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|305664141|ref|YP_003860429.1| - 2.2e-05 23.9 0.1 0.0016 17.8 0.0 2.8 1 1 1 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|305664141|ref|YP_003860429.1| - 0.0079 15.5 0.0 0.015 14.6 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|305664141|ref|YP_003860429.1| - 0.0085 15.3 0.0 0.023 13.9 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TF_Zn_Ribbon PF08271.7 gi|305664142|ref|YP_003860430.1| - 0.014 14.6 0.8 0.019 14.2 0.6 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Lar_restr_allev PF14354.1 gi|305664142|ref|YP_003860430.1| - 0.11 12.7 0.6 0.15 12.3 0.4 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|305664142|ref|YP_003860430.1| - 0.14 11.9 6.8 0.2 11.4 4.8 1.5 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Desulfoferrod_N PF06397.7 gi|305664142|ref|YP_003860430.1| - 0.25 10.7 1.9 0.41 10.0 0.1 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-IS66 PF13005.2 gi|305664142|ref|YP_003860430.1| - 0.36 10.8 2.1 0.48 10.4 0.5 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Semialdhyde_dh PF01118.19 gi|305664143|ref|YP_003860431.1| - 2.9e-33 114.7 0.0 1.1e-32 112.8 0.0 1.9 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|305664143|ref|YP_003860431.1| - 3.1e-11 43.4 0.0 4.1e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain AA_kinase PF00696.23 gi|305664144|ref|YP_003860432.1| - 2e-31 109.3 9.5 2.3e-31 109.1 6.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family HTH_24 PF13412.1 gi|305664145|ref|YP_003860433.1| - 4.7e-16 57.8 0.8 6.8e-16 57.3 0.6 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|305664145|ref|YP_003860433.1| - 2.7e-15 55.6 0.2 4.1e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|305664145|ref|YP_003860433.1| - 3.5e-15 55.4 0.2 5.1e-15 54.9 0.2 1.2 1 0 0 1 1 1 1 AsnC family HTH_11 PF08279.7 gi|305664145|ref|YP_003860433.1| - 2.7e-07 30.1 0.9 6.8e-07 28.8 0.3 1.9 2 0 0 2 2 2 1 HTH domain HTH_Mga PF08280.6 gi|305664145|ref|YP_003860433.1| - 5.4e-06 26.0 0.1 1e-05 25.1 0.1 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain NapD PF03927.8 gi|305664145|ref|YP_003860433.1| - 1.1e-05 25.1 0.4 1.7e-05 24.5 0.3 1.3 1 0 0 1 1 1 1 NapD protein HTH_20 PF12840.2 gi|305664145|ref|YP_003860433.1| - 4.4e-05 23.1 0.0 7.2e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain FeoC PF09012.5 gi|305664145|ref|YP_003860433.1| - 5.3e-05 22.8 0.1 7.3e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|305664145|ref|YP_003860433.1| - 5.6e-05 22.7 0.8 9.1e-05 22.0 0.4 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|305664145|ref|YP_003860433.1| - 0.00021 20.9 0.1 0.00034 20.2 0.1 1.3 1 0 0 1 1 1 1 MarR family Mga PF05043.8 gi|305664145|ref|YP_003860433.1| - 0.00022 21.4 0.0 0.00036 20.7 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain DUF4423 PF14394.1 gi|305664145|ref|YP_003860433.1| - 0.0003 20.3 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|305664145|ref|YP_003860433.1| - 0.00031 20.6 0.2 0.00058 19.7 0.2 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|305664145|ref|YP_003860433.1| - 0.00034 20.1 0.1 0.00055 19.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|305664145|ref|YP_003860433.1| - 0.0005 19.6 0.0 0.00096 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|305664145|ref|YP_003860433.1| - 0.0027 17.6 0.1 0.0051 16.7 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|305664145|ref|YP_003860433.1| - 0.005 16.6 0.1 0.01 15.6 0.1 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_DeoR PF08220.7 gi|305664145|ref|YP_003860433.1| - 0.0055 16.2 0.1 0.0086 15.5 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.7 gi|305664145|ref|YP_003860433.1| - 0.0087 15.6 0.1 0.021 14.3 0.0 1.7 1 1 0 1 1 1 1 HTH DNA binding domain HTH_28 PF13518.1 gi|305664145|ref|YP_003860433.1| - 0.01 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|305664145|ref|YP_003860433.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.1 gi|305664145|ref|YP_003860433.1| - 0.019 14.9 0.1 0.028 14.4 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_8 PF02954.14 gi|305664145|ref|YP_003860433.1| - 0.021 14.3 0.2 0.038 13.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_27 PF13463.1 gi|305664145|ref|YP_003860433.1| - 0.024 14.9 0.1 0.041 14.2 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r4_2 PF08281.7 gi|305664145|ref|YP_003860433.1| - 0.031 13.7 0.1 0.046 13.1 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|305664145|ref|YP_003860433.1| - 0.037 13.3 0.0 0.059 12.6 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_36 PF13730.1 gi|305664145|ref|YP_003860433.1| - 0.045 13.8 0.9 0.22 11.6 0.3 2.2 2 1 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|305664145|ref|YP_003860433.1| - 0.045 13.8 0.1 0.089 12.9 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator Rio2_N PF09202.6 gi|305664145|ref|YP_003860433.1| - 0.049 13.6 0.0 0.097 12.7 0.0 1.5 2 0 0 2 2 1 0 Rio2, N-terminal PCI PF01399.22 gi|305664145|ref|YP_003860433.1| - 0.069 13.4 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 PCI domain HTH_IclR PF09339.5 gi|305664145|ref|YP_003860433.1| - 0.073 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_30 PF13556.1 gi|305664145|ref|YP_003860433.1| - 0.09 12.3 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain PaaX PF07848.7 gi|305664145|ref|YP_003860433.1| - 0.11 12.4 0.1 0.3 11.1 0.0 1.7 2 0 0 2 2 1 0 PaaX-like protein GHMP_kinases_N PF00288.21 gi|305664146|ref|YP_003860434.1| - 1e-15 57.5 1.1 1.9e-15 56.6 0.8 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|305664146|ref|YP_003860434.1| - 9.8e-09 35.3 0.6 1.9e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal Homoserine_dh PF00742.14 gi|305664147|ref|YP_003860435.1| - 4.5e-50 169.7 0.5 7.3e-50 169.1 0.2 1.5 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.11 gi|305664147|ref|YP_003860435.1| - 5.5e-07 29.9 0.0 1.2e-06 28.8 0.0 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain ELFV_dehydrog PF00208.16 gi|305664147|ref|YP_003860435.1| - 0.0002 21.0 0.0 0.0005 19.7 0.0 1.6 1 1 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|305664147|ref|YP_003860435.1| - 0.018 14.7 0.1 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Gp_dh_N PF00044.19 gi|305664147|ref|YP_003860435.1| - 0.047 13.6 0.2 0.094 12.6 0.2 1.5 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|305664147|ref|YP_003860435.1| - 0.069 13.5 0.1 0.2 12.0 0.1 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AA_kinase PF00696.23 gi|305664148|ref|YP_003860436.1| - 2.4e-44 151.6 0.2 2.9e-44 151.4 0.2 1.1 1 0 0 1 1 1 1 Amino acid kinase family Semialdhyde_dhC PF02774.13 gi|305664149|ref|YP_003860437.1| - 4e-41 140.8 0.1 8e-41 139.9 0.0 1.5 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, dimerisation domain Semialdhyde_dh PF01118.19 gi|305664149|ref|YP_003860437.1| - 2e-33 115.2 0.0 3.3e-33 114.5 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|305664149|ref|YP_003860437.1| - 0.024 14.0 0.1 2 7.8 0.0 2.3 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|305664149|ref|YP_003860437.1| - 0.027 14.9 0.0 0.071 13.6 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Rubrerythrin PF02915.12 gi|305664150|ref|YP_003860438.1| - 3e-05 24.3 0.2 9.5e-05 22.7 0.2 1.7 1 1 0 1 1 1 1 Rubrerythrin Iso_dh PF00180.15 gi|305664152|ref|YP_003860440.1| - 1.6e-95 320.0 0.0 1.9e-95 319.7 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Mrr_cat PF04471.7 gi|305664154|ref|YP_003860442.1| - 9.3e-06 25.4 0.2 4e-05 23.4 0.1 2.0 2 0 0 2 2 2 1 Restriction endonuclease DUF91 PF01939.11 gi|305664154|ref|YP_003860442.1| - 3.2e-05 23.2 0.3 3.2e-05 23.2 0.2 2.3 1 1 1 2 2 2 1 Protein of unknown function DUF91 HTH_1 PF00126.22 gi|305664154|ref|YP_003860442.1| - 3.2e-05 23.5 1.8 0.0002 21.0 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix protein, lysR family UPF0102 PF02021.12 gi|305664154|ref|YP_003860442.1| - 0.00035 20.4 0.2 0.00035 20.4 0.1 2.4 3 0 0 3 3 3 1 Uncharacterised protein family UPF0102 HTH_24 PF13412.1 gi|305664154|ref|YP_003860442.1| - 0.0029 16.9 1.1 0.049 13.0 0.0 3.0 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|305664154|ref|YP_003860442.1| - 0.014 15.0 0.1 1.6 8.4 0.0 3.2 3 0 0 3 3 3 0 MarR family MCE PF02470.15 gi|305664154|ref|YP_003860442.1| - 0.04 13.9 0.0 0.15 12.0 0.0 1.9 1 1 0 1 1 1 0 mce related protein DUF4143 PF13635.1 gi|305664154|ref|YP_003860442.1| - 0.047 13.8 0.1 0.094 12.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) HTH_8 PF02954.14 gi|305664154|ref|YP_003860442.1| - 0.054 13.0 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family AAA_17 PF13207.1 gi|305664154|ref|YP_003860442.1| - 0.15 12.8 0.4 1.1 10.0 0.1 2.4 2 1 1 3 3 3 0 AAA domain Seryl_tRNA_N PF02403.17 gi|305664154|ref|YP_003860442.1| - 0.17 11.9 4.8 0.15 12.1 2.2 1.7 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Laminin_II PF06009.7 gi|305664154|ref|YP_003860442.1| - 0.18 11.5 4.6 0.23 11.2 2.6 1.6 2 0 0 2 2 2 0 Laminin Domain II ZapA PF05164.8 gi|305664154|ref|YP_003860442.1| - 0.61 10.0 3.2 1.3 8.9 1.3 2.0 2 0 0 2 2 2 0 Cell division protein ZapA H-kinase_dim PF02895.9 gi|305664154|ref|YP_003860442.1| - 1.4 9.2 7.1 2.5 8.4 3.9 2.3 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain COMP PF11598.3 gi|305664154|ref|YP_003860442.1| - 1.5 8.9 5.6 1.2 9.2 2.0 2.2 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein ABC_tran PF00005.22 gi|305664155|ref|YP_003860443.1| - 2.3e-34 118.6 0.0 3e-34 118.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664155|ref|YP_003860443.1| - 8e-12 45.7 2.8 7e-06 26.2 0.1 2.3 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|305664155|ref|YP_003860443.1| - 1.8e-10 41.0 1.2 5.2e-09 36.3 0.8 2.4 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|305664155|ref|YP_003860443.1| - 2e-05 24.0 0.0 3.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|305664155|ref|YP_003860443.1| - 2.2e-05 23.6 0.5 0.01 14.9 0.2 2.2 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|305664155|ref|YP_003860443.1| - 0.00037 19.8 1.4 0.003 16.8 0.9 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|305664155|ref|YP_003860443.1| - 0.00045 20.2 0.2 0.0014 18.6 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.1 gi|305664155|ref|YP_003860443.1| - 0.0049 17.2 0.0 0.0073 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|305664155|ref|YP_003860443.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|305664155|ref|YP_003860443.1| - 0.013 14.8 0.0 0.034 13.5 0.0 1.8 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|305664155|ref|YP_003860443.1| - 0.02 14.8 0.6 0.035 14.0 0.4 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|305664155|ref|YP_003860443.1| - 0.023 14.8 1.1 0.46 10.6 0.8 2.3 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305664155|ref|YP_003860443.1| - 0.053 12.4 0.0 0.1 11.4 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_18 PF13238.1 gi|305664155|ref|YP_003860443.1| - 0.062 13.6 0.1 0.19 12.0 0.0 1.9 2 1 0 2 2 2 0 AAA domain cobW PF02492.14 gi|305664155|ref|YP_003860443.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|305664155|ref|YP_003860443.1| - 0.11 12.6 0.3 1.2 9.3 0.2 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|305664155|ref|YP_003860443.1| - 0.11 13.2 0.8 0.31 11.8 0.6 1.9 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|305664155|ref|YP_003860443.1| - 0.15 11.2 0.0 0.4 9.7 0.0 1.6 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_10 PF12846.2 gi|305664155|ref|YP_003860443.1| - 0.18 11.1 0.6 0.38 10.1 0.3 1.6 1 1 0 1 1 1 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|305664155|ref|YP_003860443.1| - 0.24 10.8 0.5 0.43 10.0 0.4 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|305664156|ref|YP_003860444.1| - 4.6e-23 82.0 0.0 6.7e-23 81.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664156|ref|YP_003860444.1| - 6.5e-15 55.8 4.1 1e-12 48.6 2.8 2.3 1 1 0 1 1 1 1 AAA domain oligo_HPY PF08352.7 gi|305664156|ref|YP_003860444.1| - 8.9e-11 41.9 0.1 2.3e-10 40.6 0.1 1.7 1 1 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|305664156|ref|YP_003860444.1| - 2.5e-05 23.7 0.1 5e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|305664156|ref|YP_003860444.1| - 3e-05 23.3 0.5 0.00031 20.0 0.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|305664156|ref|YP_003860444.1| - 0.00023 20.6 0.5 0.0023 17.4 0.1 2.0 1 1 1 2 2 2 1 AAA-like domain AAA_17 PF13207.1 gi|305664156|ref|YP_003860444.1| - 0.0003 21.6 0.1 0.00062 20.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305664156|ref|YP_003860444.1| - 0.00051 20.0 0.0 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305664156|ref|YP_003860444.1| - 0.0011 19.0 0.1 0.006 16.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305664156|ref|YP_003860444.1| - 0.0015 18.8 0.4 0.0042 17.3 0.3 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|305664156|ref|YP_003860444.1| - 0.0032 16.6 0.0 0.027 13.6 0.0 2.0 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|305664156|ref|YP_003860444.1| - 0.0034 16.4 0.5 0.36 9.8 0.0 2.2 1 1 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|305664156|ref|YP_003860444.1| - 0.0048 15.4 1.9 0.024 13.1 0.2 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|305664156|ref|YP_003860444.1| - 0.005 17.2 0.0 0.0073 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|305664156|ref|YP_003860444.1| - 0.014 15.3 0.9 0.03 14.2 0.6 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|305664156|ref|YP_003860444.1| - 0.015 15.1 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|305664156|ref|YP_003860444.1| - 0.031 13.4 0.1 0.053 12.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Miro PF08477.8 gi|305664156|ref|YP_003860444.1| - 0.06 13.8 0.0 0.27 11.7 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein AAA_25 PF13481.1 gi|305664156|ref|YP_003860444.1| - 0.064 12.6 0.7 0.13 11.6 0.2 1.6 2 0 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|305664156|ref|YP_003860444.1| - 0.067 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family T2SE PF00437.15 gi|305664156|ref|YP_003860444.1| - 0.082 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.7 gi|305664156|ref|YP_003860444.1| - 0.095 12.3 0.1 0.28 10.8 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_5 PF07728.9 gi|305664156|ref|YP_003860444.1| - 0.13 11.9 0.1 0.34 10.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.17 gi|305664157|ref|YP_003860445.1| - 3.3e-18 65.8 20.6 3.3e-18 65.8 14.3 2.2 2 0 0 2 2 2 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305664157|ref|YP_003860445.1| - 0.0017 17.7 0.2 0.0017 17.7 0.1 2.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|305664158|ref|YP_003860446.1| - 1.6e-33 115.7 16.1 1.6e-33 115.7 11.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|305664159|ref|YP_003860447.1| - 4.5e-70 236.3 0.5 5.5e-70 236.0 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle PEPcase_2 PF14010.1 gi|305664160|ref|YP_003860448.1| - 7.4e-126 420.3 0.6 8.3e-126 420.1 0.4 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase PF00311.12 gi|305664160|ref|YP_003860448.1| - 0.15 9.9 0.0 0.24 9.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase PALP PF00291.20 gi|305664161|ref|YP_003860449.1| - 1.3e-74 251.2 0.8 1.4e-74 251.0 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|305664161|ref|YP_003860449.1| - 0.033 14.1 0.5 14 5.7 0.0 3.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal PhnA_Zn_Ribbon PF08274.7 gi|305664161|ref|YP_003860449.1| - 0.046 13.5 0.1 0.084 12.6 0.1 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Iso_dh PF00180.15 gi|305664162|ref|YP_003860450.1| - 8.3e-89 297.9 0.0 1e-88 297.6 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Aconitase_C PF00694.14 gi|305664163|ref|YP_003860451.1| - 2.6e-18 66.3 0.0 3.8e-18 65.8 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Aconitase PF00330.15 gi|305664164|ref|YP_003860452.1| - 1.2e-74 251.4 3.9 1.2e-45 155.9 0.3 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|305664164|ref|YP_003860452.1| - 0.0022 16.5 0.0 0.0031 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) HMGL-like PF00682.14 gi|305664165|ref|YP_003860453.1| - 1.5e-29 103.3 0.0 2.8e-29 102.4 0.0 1.5 2 0 0 2 2 2 1 HMGL-like 2-Hacid_dh_C PF02826.14 gi|305664166|ref|YP_003860454.1| - 6.4e-54 181.7 0.0 9.2e-54 181.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|305664166|ref|YP_003860454.1| - 1.2e-29 102.4 0.0 1.4e-29 102.2 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|305664166|ref|YP_003860454.1| - 1.7e-05 24.6 0.0 3.7e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|305664166|ref|YP_003860454.1| - 0.001 18.4 0.0 0.0038 16.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain AdoHcyase_NAD PF00670.16 gi|305664166|ref|YP_003860454.1| - 0.0028 17.5 0.4 0.0058 16.4 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TrkA_N PF02254.13 gi|305664166|ref|YP_003860454.1| - 0.0073 16.3 0.6 0.15 12.0 0.1 2.4 2 0 0 2 2 2 1 TrkA-N domain Arylsulfotrans PF05935.6 gi|305664166|ref|YP_003860454.1| - 0.017 13.6 0.0 0.027 12.9 0.0 1.2 1 0 0 1 1 1 0 Arylsulfotransferase (ASST) Gp_dh_N PF00044.19 gi|305664166|ref|YP_003860454.1| - 0.097 12.6 0.2 0.18 11.7 0.1 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Aminotran_5 PF00266.14 gi|305664167|ref|YP_003860455.1| - 8.7e-27 93.8 0.0 1e-26 93.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF89 PF01937.14 gi|305664168|ref|YP_003860456.1| - 2.5e-20 72.5 0.3 4.6e-17 61.8 0.1 2.4 1 1 1 2 2 2 2 Protein of unknown function DUF89 Aldedh PF00171.17 gi|305664169|ref|YP_003860457.1| - 1e-124 416.4 0.0 1.2e-124 416.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|305664169|ref|YP_003860457.1| - 1.1e-08 34.2 0.0 1.9e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Aminotran_5 PF00266.14 gi|305664170|ref|YP_003860458.1| - 2.6e-134 447.6 0.0 2.9e-134 447.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|305664170|ref|YP_003860458.1| - 9e-09 34.8 0.0 1.2e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|305664170|ref|YP_003860458.1| - 5.1e-08 32.3 0.1 7.9e-08 31.7 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|305664170|ref|YP_003860458.1| - 1.3e-07 30.2 0.1 3.3e-07 28.9 0.0 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|305664170|ref|YP_003860458.1| - 1.7e-07 30.5 0.1 4.8e-07 29.0 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class I and II SelA PF03841.8 gi|305664170|ref|YP_003860458.1| - 0.0015 17.3 0.6 0.0043 15.8 0.4 1.7 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Pyridoxal_deC PF00282.14 gi|305664170|ref|YP_003860458.1| - 0.0036 15.7 0.0 0.013 13.9 0.1 1.8 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain ParBc PF02195.13 gi|305664171|ref|YP_003860459.1| - 7.1e-10 38.8 0.2 1.1e-09 38.2 0.1 1.2 1 0 0 1 1 1 1 ParB-like nuclease domain WWE PF02825.15 gi|305664171|ref|YP_003860459.1| - 0.099 12.0 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 WWE domain PALP PF00291.20 gi|305664172|ref|YP_003860460.1| - 1.1e-37 129.9 0.0 1.4e-37 129.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IlvC PF01450.14 gi|305664172|ref|YP_003860460.1| - 0.083 12.8 0.1 0.97 9.3 0.1 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain HD PF01966.17 gi|305664173|ref|YP_003860461.1| - 1e-11 44.8 2.0 1.6e-11 44.3 1.4 1.3 1 0 0 1 1 1 1 HD domain TraI_2 PF07514.6 gi|305664173|ref|YP_003860461.1| - 0.049 12.4 0.4 0.094 11.4 0.3 1.5 1 1 0 1 1 1 0 Putative helicase Peptidase_M50 PF02163.17 gi|305664175|ref|YP_003860463.1| - 1.5e-12 46.8 14.3 3.5e-11 42.4 9.9 2.6 1 1 0 1 1 1 1 Peptidase family M50 CbiA PF01656.18 gi|305664176|ref|YP_003860464.1| - 0.00057 19.3 0.3 0.0032 16.8 0.2 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CRISPR_Cas2 PF09827.4 gi|305664176|ref|YP_003860464.1| - 0.021 14.9 0.0 0.51 10.5 0.0 2.6 2 0 0 2 2 2 0 CRISPR associated protein Cas2 AAA_26 PF13500.1 gi|305664176|ref|YP_003860464.1| - 0.024 14.2 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|305664176|ref|YP_003860464.1| - 0.024 14.3 0.1 0.6 9.8 0.0 2.5 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-cone PF03477.11 gi|305664177|ref|YP_003860465.1| - 1.3e-09 38.3 1.1 1.3e-09 38.3 0.8 1.7 1 1 1 2 2 2 1 ATP cone domain KNOX1 PF03790.8 gi|305664177|ref|YP_003860465.1| - 0.01 15.1 0.2 0.017 14.4 0.1 1.3 1 0 0 1 1 1 0 KNOX1 domain Tim54 PF11711.3 gi|305664177|ref|YP_003860465.1| - 0.017 13.7 0.3 0.018 13.6 0.2 1.1 1 0 0 1 1 1 0 Inner membrane protein import complex subunit Tim54 Pox_VLTF3 PF04947.9 gi|305664177|ref|YP_003860465.1| - 0.043 13.3 0.6 0.046 13.2 0.4 1.3 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like MHCassoc_trimer PF08831.5 gi|305664177|ref|YP_003860465.1| - 0.088 12.6 0.4 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Class II MHC-associated invariant chain trimerisation domain Radical_SAM PF04055.16 gi|305664178|ref|YP_003860466.1| - 1.2e-16 61.2 0.0 1.9e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|305664178|ref|YP_003860466.1| - 1.4e-09 38.0 0.0 2.2e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|305664178|ref|YP_003860466.1| - 8.8e-06 25.8 0.1 1.5e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TatD_DNase PF01026.16 gi|305664179|ref|YP_003860467.1| - 2e-18 66.5 0.0 2.4e-18 66.2 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase Radical_SAM PF04055.16 gi|305664179|ref|YP_003860467.1| - 0.052 13.7 0.1 1.6 8.8 0.1 2.4 1 1 1 2 2 2 0 Radical SAM superfamily MFS_1 PF07690.11 gi|305664180|ref|YP_003860468.1| - 3 6.4 53.5 0.7 8.5 26.8 2.1 1 1 1 2 2 2 0 Major Facilitator Superfamily MFS_1 PF07690.11 gi|305664181|ref|YP_003860469.1| - 2.2e-06 26.6 35.5 0.0013 17.5 10.3 2.0 2 0 0 2 2 2 2 Major Facilitator Superfamily MS_channel PF00924.13 gi|305664182|ref|YP_003860470.1| - 1.8e-15 56.8 7.1 1.8e-15 56.8 4.9 1.9 2 0 0 2 2 2 1 Mechanosensitive ion channel TrkA_N PF02254.13 gi|305664183|ref|YP_003860471.1| - 0.0099 15.8 0.6 0.02 14.8 0.4 1.6 1 0 0 1 1 1 1 TrkA-N domain DUF2711 PF10924.3 gi|305664183|ref|YP_003860471.1| - 0.036 13.5 0.0 0.069 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2711) TrkA_C PF02080.16 gi|305664183|ref|YP_003860471.1| - 0.041 13.4 0.5 0.12 11.9 0.3 1.8 1 0 0 1 1 1 0 TrkA-C domain Nol1_Nop2_Fmu PF01189.12 gi|305664185|ref|YP_003860473.1| - 4.7e-61 206.6 0.0 5.7e-61 206.3 0.0 1.1 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|305664185|ref|YP_003860473.1| - 1.7e-09 37.4 0.0 3.3e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|305664185|ref|YP_003860473.1| - 2.5e-08 34.1 0.0 4e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_26 PF13659.1 gi|305664185|ref|YP_003860473.1| - 0.0001 22.3 0.0 0.00018 21.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|305664185|ref|YP_003860473.1| - 0.0019 18.7 0.0 0.0044 17.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|305664185|ref|YP_003860473.1| - 0.0045 16.1 0.0 0.0072 15.4 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_5 PF01795.14 gi|305664185|ref|YP_003860473.1| - 0.0076 15.5 0.0 0.084 12.1 0.0 2.2 2 0 0 2 2 2 1 MraW methylase family NusB PF01029.13 gi|305664185|ref|YP_003860473.1| - 0.026 14.4 0.0 0.1 12.5 0.0 2.0 1 0 0 1 1 1 0 NusB family Fibrillarin PF01269.12 gi|305664185|ref|YP_003860473.1| - 0.031 13.1 0.0 0.056 12.3 0.0 1.4 1 0 0 1 1 1 0 Fibrillarin URO-D PF01208.12 gi|305664187|ref|YP_003860475.1| - 1.2e-17 63.8 0.0 1.4e-16 60.3 0.0 2.0 2 0 0 2 2 2 2 Uroporphyrinogen decarboxylase (URO-D) HAD_2 PF13419.1 gi|305664188|ref|YP_003860476.1| - 1.1e-07 32.1 0.1 1.4e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DNA_pol_A_exo1 PF01612.15 gi|305664188|ref|YP_003860476.1| - 0.0046 16.4 0.1 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 3'-5' exonuclease DUF705 PF05152.7 gi|305664188|ref|YP_003860476.1| - 0.0073 15.3 0.4 0.013 14.4 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF705) Hydrolase PF00702.21 gi|305664188|ref|YP_003860476.1| - 0.14 12.5 0.0 0.18 12.2 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF810 PF05664.6 gi|305664188|ref|YP_003860476.1| - 0.17 10.1 1.6 0.24 9.6 0.5 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF810) Glyco_hydro_3 PF00933.16 gi|305664189|ref|YP_003860477.1| - 8.2e-92 307.3 0.0 1.1e-91 306.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|305664189|ref|YP_003860477.1| - 7.5e-49 166.2 0.0 1.3e-48 165.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|305664189|ref|YP_003860477.1| - 1.4e-17 63.3 0.0 2.7e-17 62.4 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain DAO PF01266.19 gi|305664190|ref|YP_003860478.1| - 1.7e-14 53.5 0.0 7.1e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|305664190|ref|YP_003860478.1| - 2.5e-14 53.0 0.2 5e-14 52.0 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|305664190|ref|YP_003860478.1| - 1.6e-12 47.3 0.0 1.1e-11 44.5 0.0 2.0 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.19 gi|305664190|ref|YP_003860478.1| - 2.4e-12 46.4 0.2 1.4e-07 30.7 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|305664190|ref|YP_003860478.1| - 1.4e-07 30.8 0.1 7.3e-07 28.5 0.1 1.9 2 0 0 2 2 2 1 Thi4 family GDI PF00996.13 gi|305664190|ref|YP_003860478.1| - 3e-06 25.8 0.9 0.00042 18.7 0.1 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor HI0933_like PF03486.9 gi|305664190|ref|YP_003860478.1| - 7.7e-06 24.6 0.0 0.0059 15.1 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|305664190|ref|YP_003860478.1| - 4.6e-05 22.6 0.6 8.2e-05 21.8 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|305664190|ref|YP_003860478.1| - 0.00018 20.7 0.0 0.0016 17.5 0.0 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|305664190|ref|YP_003860478.1| - 0.00063 19.6 0.1 0.0015 18.4 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|305664190|ref|YP_003860478.1| - 0.0022 16.9 0.9 0.35 9.6 0.1 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|305664190|ref|YP_003860478.1| - 0.0069 16.4 0.1 0.14 12.1 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|305664190|ref|YP_003860478.1| - 0.072 13.4 1.2 0.51 10.7 0.1 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF3159 PF11361.3 gi|305664190|ref|YP_003860478.1| - 0.1 12.0 8.0 0.16 11.4 5.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3159) ETRAMP PF09716.5 gi|305664191|ref|YP_003860479.1| - 0.57 10.1 1.9 1.2 9.0 1.3 1.6 1 1 0 1 1 1 0 Malarial early transcribed membrane protein (ETRAMP) Rifin_STEVOR PF02009.11 gi|305664191|ref|YP_003860479.1| - 6.5 6.3 9.6 8.9 5.8 6.6 1.1 1 0 0 1 1 1 0 Rifin/stevor family BPD_transp_1 PF00528.17 gi|305664192|ref|YP_003860480.1| - 5.6e-20 71.6 16.4 5.6e-20 71.6 11.4 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305664192|ref|YP_003860480.1| - 1.5e-07 30.7 1.1 2.5e-06 26.7 0.0 2.8 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF1009 PF06230.6 gi|305664192|ref|YP_003860480.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1009) UPF0126 PF03458.8 gi|305664192|ref|YP_003860480.1| - 3.7 7.2 14.4 0.14 11.8 2.9 3.6 2 1 1 3 3 3 0 UPF0126 domain BPD_transp_1 PF00528.17 gi|305664193|ref|YP_003860481.1| - 4.1e-37 127.4 15.3 4.1e-37 127.4 10.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|305664194|ref|YP_003860482.1| - 6.8e-54 183.1 1.2 6.8e-54 183.1 0.9 1.8 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Trypan_PARP PF05887.6 gi|305664194|ref|YP_003860482.1| - 0.0008 19.2 14.2 0.0013 18.5 9.8 1.2 1 0 0 1 1 1 1 Procyclic acidic repetitive protein (PARP) Pex14_N PF04695.8 gi|305664194|ref|YP_003860482.1| - 0.019 15.0 2.0 0.035 14.1 1.4 1.4 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region UPF0154 PF03672.8 gi|305664194|ref|YP_003860482.1| - 0.27 10.8 4.4 0.094 12.3 1.0 1.8 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0154) SBP_bac_8 PF13416.1 gi|305664195|ref|YP_003860483.1| - 1.1e-10 41.7 2.6 2e-10 40.8 1.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|305664195|ref|YP_003860483.1| - 2e-10 40.4 1.3 3.1e-10 39.8 0.9 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PsbN PF02468.10 gi|305664195|ref|YP_003860483.1| - 0.037 13.6 2.1 0.063 12.8 0.5 2.0 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) YppF PF14178.1 gi|305664195|ref|YP_003860483.1| - 0.065 12.7 0.1 0.14 11.6 0.1 1.5 1 0 0 1 1 1 0 YppF-like protein DUF3098 PF11297.3 gi|305664196|ref|YP_003860484.1| - 0.42 10.3 9.8 1 9.0 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) SdpI PF13630.1 gi|305664196|ref|YP_003860484.1| - 3.7 7.3 6.8 7.8 6.2 0.3 2.4 2 0 0 2 2 2 0 SdpI/YhfL protein family ABC_tran PF00005.22 gi|305664197|ref|YP_003860485.1| - 1e-30 106.8 0.0 1.4e-30 106.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664197|ref|YP_003860485.1| - 1e-06 28.9 0.0 0.00064 19.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain oligo_HPY PF08352.7 gi|305664197|ref|YP_003860485.1| - 7e-06 26.3 0.0 1.4e-05 25.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_29 PF13555.1 gi|305664197|ref|YP_003860485.1| - 0.0002 20.8 0.1 0.00044 19.7 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305664197|ref|YP_003860485.1| - 0.00027 20.9 0.0 0.00052 20.0 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|305664197|ref|YP_003860485.1| - 0.00077 19.6 0.1 0.0014 18.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|305664197|ref|YP_003860485.1| - 0.0026 16.9 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|305664197|ref|YP_003860485.1| - 0.0029 17.2 0.5 0.0074 15.9 0.3 1.7 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|305664197|ref|YP_003860485.1| - 0.0053 15.6 0.0 0.0069 15.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain Zeta_toxin PF06414.7 gi|305664197|ref|YP_003860485.1| - 0.0086 15.1 0.0 0.014 14.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin UPF0079 PF02367.12 gi|305664197|ref|YP_003860485.1| - 0.01 15.4 0.0 0.018 14.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|305664197|ref|YP_003860485.1| - 0.014 15.3 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|305664197|ref|YP_003860485.1| - 0.023 13.6 0.1 0.044 12.6 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SRP54 PF00448.17 gi|305664197|ref|YP_003860485.1| - 0.024 14.1 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_18 PF13238.1 gi|305664197|ref|YP_003860485.1| - 0.028 14.7 0.0 0.044 14.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305664197|ref|YP_003860485.1| - 0.031 13.7 0.2 0.11 11.9 0.1 1.9 1 1 0 2 2 2 0 AAA-like domain AAA_17 PF13207.1 gi|305664197|ref|YP_003860485.1| - 0.051 14.3 0.0 0.1 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|305664197|ref|YP_003860485.1| - 0.056 13.6 0.0 0.17 12.0 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) KaiC PF06745.8 gi|305664197|ref|YP_003860485.1| - 0.062 12.4 0.1 0.45 9.6 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_25 PF13481.1 gi|305664197|ref|YP_003860485.1| - 0.064 12.6 0.0 0.19 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|305664197|ref|YP_003860485.1| - 0.064 13.5 0.1 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|305664197|ref|YP_003860485.1| - 0.069 12.9 0.1 0.2 11.4 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 G-alpha PF00503.15 gi|305664197|ref|YP_003860485.1| - 0.088 11.4 0.0 0.12 10.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit NACHT PF05729.7 gi|305664197|ref|YP_003860485.1| - 0.089 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|305664197|ref|YP_003860485.1| - 0.096 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain DUF927 PF06048.6 gi|305664197|ref|YP_003860485.1| - 0.096 11.9 0.0 0.27 10.4 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF927) DUF258 PF03193.11 gi|305664197|ref|YP_003860485.1| - 0.1 11.8 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|305664197|ref|YP_003860485.1| - 0.13 12.0 0.0 0.23 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_15 PF13175.1 gi|305664197|ref|YP_003860485.1| - 0.18 10.8 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.22 gi|305664198|ref|YP_003860486.1| - 6.3e-27 94.5 0.0 9.7e-27 93.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305664198|ref|YP_003860486.1| - 9.7e-20 70.7 0.1 1.6e-19 69.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305664198|ref|YP_003860486.1| - 6.5e-08 32.8 0.8 1.1e-05 25.6 0.6 2.2 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|305664198|ref|YP_003860486.1| - 0.00032 20.8 0.4 0.11 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|305664198|ref|YP_003860486.1| - 0.0022 17.2 0.0 0.0035 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|305664198|ref|YP_003860486.1| - 0.011 14.1 1.5 0.23 9.8 0.8 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|305664198|ref|YP_003860486.1| - 0.014 14.2 0.7 0.018 13.8 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain RNA_helicase PF00910.17 gi|305664198|ref|YP_003860486.1| - 0.02 15.0 0.0 0.034 14.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_16 PF13191.1 gi|305664198|ref|YP_003860486.1| - 0.025 14.5 0.0 0.05 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.1 gi|305664198|ref|YP_003860486.1| - 0.025 14.0 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|305664198|ref|YP_003860486.1| - 0.025 13.7 0.5 6.1 5.9 0.1 2.5 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain NACHT PF05729.7 gi|305664198|ref|YP_003860486.1| - 0.034 13.8 0.0 0.071 12.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|305664198|ref|YP_003860486.1| - 0.035 14.0 0.1 0.095 12.6 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_10 PF12846.2 gi|305664198|ref|YP_003860486.1| - 0.048 13.1 0.2 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 AAA-like domain KaiC PF06745.8 gi|305664198|ref|YP_003860486.1| - 0.057 12.5 0.1 0.38 9.8 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_17 PF13207.1 gi|305664198|ref|YP_003860486.1| - 0.058 14.2 0.5 0.11 13.3 0.4 1.7 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|305664198|ref|YP_003860486.1| - 0.062 12.9 0.3 0.16 11.6 0.0 1.8 2 0 0 2 2 2 0 Archaeal ATPase PRK PF00485.13 gi|305664198|ref|YP_003860486.1| - 0.064 12.8 0.3 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|305664198|ref|YP_003860486.1| - 0.079 12.3 0.0 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|305664198|ref|YP_003860486.1| - 0.1 11.1 0.4 1.2 7.6 0.1 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|305664198|ref|YP_003860486.1| - 0.14 12.4 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Glyco_transf_36 PF06165.6 gi|305664199|ref|YP_003860487.1| - 4.8e-36 122.9 0.1 8.6e-36 122.1 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 36 GT36_AF PF06205.6 gi|305664199|ref|YP_003860487.1| - 3.6e-23 81.1 0.0 6.5e-23 80.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase 36 associated family CBM_X PF06204.6 gi|305664199|ref|YP_003860487.1| - 2.1e-22 78.3 1.5 6e-22 76.9 1.0 1.9 1 0 0 1 1 1 1 Putative carbohydrate binding domain Bac_rhamnosid PF05592.6 gi|305664199|ref|YP_003860487.1| - 0.0038 15.5 0.0 0.0067 14.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase DUF608 PF04685.8 gi|305664199|ref|YP_003860487.1| - 0.01 14.5 0.0 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF608 Glyco_hydro_12 PF01670.11 gi|305664200|ref|YP_003860488.1| - 6.4e-24 84.5 0.1 1.2e-23 83.6 0.1 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 12 Phosphorylase PF00343.15 gi|305664201|ref|YP_003860489.1| - 1.4e-12 46.3 0.0 4.3e-11 41.4 0.0 2.1 1 1 1 2 2 2 2 Carbohydrate phosphorylase Glycos_transf_1 PF00534.15 gi|305664201|ref|YP_003860489.1| - 5.4e-06 25.9 0.0 2.2e-05 23.9 0.0 1.9 1 1 1 2 2 2 1 Glycosyl transferases group 1 DUF1712 PF08217.6 gi|305664201|ref|YP_003860489.1| - 0.0098 14.1 0.5 0.022 13.0 0.0 1.7 3 0 0 3 3 3 1 Fungal domain of unknown function (DUF1712) Radical_SAM PF04055.16 gi|305664203|ref|YP_003860491.1| - 2.1e-23 83.2 0.0 9.7e-23 81.1 0.0 2.0 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|305664203|ref|YP_003860491.1| - 6e-07 29.6 0.0 1.6e-06 28.2 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305664203|ref|YP_003860491.1| - 6.6e-07 29.3 0.0 1.6e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.1 gi|305664203|ref|YP_003860491.1| - 7.2e-07 29.4 0.1 2.3e-06 27.8 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain AP_endonuc_2 PF01261.19 gi|305664203|ref|YP_003860491.1| - 0.0048 16.2 0.0 0.01 15.1 0.0 1.7 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HMGL-like PF00682.14 gi|305664203|ref|YP_003860491.1| - 0.012 15.3 0.0 0.02 14.5 0.0 1.3 1 0 0 1 1 1 0 HMGL-like Trm112p PF03966.11 gi|305664204|ref|YP_003860492.1| - 1.9e-12 47.3 0.8 2.6e-12 46.8 0.6 1.2 1 0 0 1 1 1 1 Trm112p-like protein Radical_SAM PF04055.16 gi|305664205|ref|YP_003860493.1| - 2e-20 73.6 0.0 4.7e-20 72.4 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|305664205|ref|YP_003860493.1| - 9.3e-10 38.4 0.1 2.5e-09 37.0 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|305664205|ref|YP_003860493.1| - 0.00088 19.3 0.0 0.0023 18.0 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|305664205|ref|YP_003860493.1| - 0.0085 16.2 0.1 0.019 15.0 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HobA PF12163.3 gi|305664205|ref|YP_003860493.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 DNA replication regulator Arch_ATPase PF01637.13 gi|305664206|ref|YP_003860494.1| - 2.4e-34 119.0 0.3 1.2e-33 116.7 0.1 1.9 2 0 0 2 2 2 1 Archaeal ATPase AAA_14 PF13173.1 gi|305664206|ref|YP_003860494.1| - 5.9e-09 35.9 0.1 0.001 19.0 0.0 2.6 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305664206|ref|YP_003860494.1| - 9e-06 25.8 0.0 1.9e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305664206|ref|YP_003860494.1| - 1.6e-05 24.9 0.0 5.7e-05 23.1 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain TrmB PF01978.14 gi|305664206|ref|YP_003860494.1| - 0.08 12.6 0.0 0.26 11.0 0.0 2.0 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2087 PF09860.4 gi|305664206|ref|YP_003860494.1| - 0.086 12.6 0.0 0.24 11.1 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2087) AAA_25 PF13481.1 gi|305664206|ref|YP_003860494.1| - 0.17 11.2 0.0 2.4 7.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain Methyltransf_11 PF08241.7 gi|305664207|ref|YP_003860495.1| - 3.8e-11 43.3 0.0 5.5e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305664207|ref|YP_003860495.1| - 1.1e-05 25.1 0.0 1.5e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305664207|ref|YP_003860495.1| - 0.059 13.8 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.4 gi|305664207|ref|YP_003860495.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Glyco_transf_5 PF08323.6 gi|305664208|ref|YP_003860496.1| - 4.9e-28 98.2 0.0 7.3e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|305664208|ref|YP_003860496.1| - 9.4e-22 77.2 0.0 1.7e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|305664208|ref|YP_003860496.1| - 1.2e-07 32.0 0.1 5.2e-07 29.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|305664208|ref|YP_003860496.1| - 8.7e-05 22.6 0.0 0.00024 21.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|305664208|ref|YP_003860496.1| - 0.0045 16.8 0.1 0.7 9.7 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|305664208|ref|YP_003860496.1| - 0.05 13.3 0.8 0.33 10.6 0.0 2.2 2 0 0 2 2 2 0 Glycosyltransferase Family 4 DUF763 PF05559.6 gi|305664209|ref|YP_003860497.1| - 6.7e-113 376.8 0.0 9.1e-113 376.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Cren7 PF11520.3 gi|305664210|ref|YP_003860498.1| - 1.1e-28 98.6 2.8 1.2e-28 98.5 1.9 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 SIS PF01380.17 gi|305664212|ref|YP_003860500.1| - 6.9e-41 138.9 0.4 7.6e-25 87.0 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|305664212|ref|YP_003860500.1| - 1.6e-11 44.2 0.0 2.9e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|305664212|ref|YP_003860500.1| - 1.5e-09 37.6 0.0 2.7e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|305664212|ref|YP_003860500.1| - 1.5e-08 33.8 0.0 1.8e-05 23.6 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|305664212|ref|YP_003860500.1| - 6.9e-06 25.8 0.4 0.022 14.4 0.0 2.5 1 1 1 2 2 2 2 SIS domain GATase_4 PF13230.1 gi|305664212|ref|YP_003860500.1| - 0.0014 17.3 0.0 0.0022 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II dUTPase PF00692.14 gi|305664213|ref|YP_003860501.1| - 7.9e-11 41.5 0.0 1.1e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|305664213|ref|YP_003860501.1| - 0.00024 19.6 0.0 0.0003 19.3 0.0 1.1 1 0 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Pex26 PF07163.7 gi|305664214|ref|YP_003860502.1| - 0.1 11.5 0.3 0.12 11.2 0.2 1.1 1 0 0 1 1 1 0 Pex26 protein PmbA_TldD PF01523.11 gi|305664216|ref|YP_003860504.1| - 3.7e-17 62.5 0.0 6.6e-17 61.7 0.0 1.5 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NAD_synthase PF02540.12 gi|305664217|ref|YP_003860505.1| - 9.4e-11 41.0 0.0 1.7e-10 40.1 0.0 1.4 1 0 0 1 1 1 1 NAD synthase Asn_synthase PF00733.16 gi|305664217|ref|YP_003860505.1| - 1.4e-07 31.2 0.0 3.3e-07 30.0 0.0 1.6 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|305664217|ref|YP_003860505.1| - 2.1e-05 23.8 0.0 0.00011 21.5 0.0 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|305664217|ref|YP_003860505.1| - 0.00018 21.0 0.0 0.00059 19.3 0.0 1.9 2 0 0 2 2 2 1 PP-loop family tRNA_Me_trans PF03054.11 gi|305664217|ref|YP_003860505.1| - 0.0015 17.1 0.0 0.0042 15.6 0.0 1.8 2 1 0 2 2 2 1 tRNA methyl transferase PUB PF09409.5 gi|305664217|ref|YP_003860505.1| - 0.04 13.6 0.2 0.25 11.1 0.0 2.2 1 1 1 2 2 2 0 PUB domain Radical_SAM PF04055.16 gi|305664218|ref|YP_003860506.1| - 4.2e-27 95.3 0.2 1.3e-26 93.7 0.1 1.8 2 0 0 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.8 gi|305664218|ref|YP_003860506.1| - 1.1e-21 76.8 0.0 1.9e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.1 gi|305664218|ref|YP_003860506.1| - 9.3e-11 41.9 0.0 2.1e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|305664218|ref|YP_003860506.1| - 1e-07 31.9 0.0 2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Tat PF00539.13 gi|305664218|ref|YP_003860506.1| - 2.5 7.7 5.1 0.65 9.6 0.5 1.9 2 0 0 2 2 2 0 Transactivating regulatory protein (Tat) Radical_SAM PF04055.16 gi|305664219|ref|YP_003860507.1| - 1.4e-25 90.4 0.1 6.3e-25 88.2 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|305664219|ref|YP_003860507.1| - 8.6e-16 57.8 0.0 1e-14 54.4 0.0 2.3 2 0 0 2 2 2 1 B12 binding domain DUF3502 PF12010.3 gi|305664219|ref|YP_003860507.1| - 0.039 13.9 0.2 0.39 10.7 0.0 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF3502) p450 PF00067.17 gi|305664219|ref|YP_003860507.1| - 0.095 11.1 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Cytochrome P450 Radical_SAM_N PF08497.5 gi|305664219|ref|YP_003860507.1| - 0.11 11.4 0.0 1.8 7.4 0.0 2.6 3 0 0 3 3 3 0 Radical SAM N-terminal COPI_assoc PF08507.5 gi|305664220|ref|YP_003860508.1| - 9.9e-05 22.0 2.3 0.0001 21.9 1.6 1.0 1 0 0 1 1 1 1 COPI associated protein YtpI PF14007.1 gi|305664220|ref|YP_003860508.1| - 0.00013 21.7 1.1 0.00014 21.7 0.8 1.1 1 0 0 1 1 1 1 YtpI-like protein DUF308 PF03729.8 gi|305664220|ref|YP_003860508.1| - 0.00055 19.8 12.5 0.001 18.9 8.7 1.5 1 1 0 1 1 1 1 Short repeat of unknown function (DUF308) DUF3096 PF11295.3 gi|305664220|ref|YP_003860508.1| - 0.0016 17.8 17.1 0.0018 17.7 11.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3096) Cytochrom_B558a PF05038.8 gi|305664220|ref|YP_003860508.1| - 0.0047 16.5 0.9 0.0054 16.3 0.6 1.1 1 0 0 1 1 1 1 Cytochrome Cytochrome b558 alpha-subunit DUF1700 PF08006.6 gi|305664220|ref|YP_003860508.1| - 0.026 13.8 2.5 0.03 13.6 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) DUF3784 PF12650.2 gi|305664220|ref|YP_003860508.1| - 0.072 13.0 2.2 0.084 12.8 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) Tic20 PF09685.5 gi|305664220|ref|YP_003860508.1| - 0.073 13.0 2.8 0.076 13.0 1.9 1.1 1 0 0 1 1 1 0 Tic20-like protein CD20 PF04103.10 gi|305664220|ref|YP_003860508.1| - 0.18 11.7 4.7 0.23 11.3 3.3 1.2 1 0 0 1 1 1 0 CD20-like family DUF3040 PF11239.3 gi|305664220|ref|YP_003860508.1| - 0.21 11.6 2.9 0.28 11.2 2.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Melittin PF01372.12 gi|305664220|ref|YP_003860508.1| - 0.4 10.0 3.4 0.74 9.2 2.4 1.6 1 1 0 1 1 1 0 Melittin MMPL PF03176.10 gi|305664220|ref|YP_003860508.1| - 0.4 9.3 4.2 0.45 9.1 2.9 1.0 1 0 0 1 1 1 0 MMPL family DUF4418 PF14387.1 gi|305664220|ref|YP_003860508.1| - 0.59 9.8 5.0 0.75 9.5 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) SdpI PF13630.1 gi|305664220|ref|YP_003860508.1| - 1.9 8.2 9.5 2.6 7.8 6.6 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF2929 PF11151.3 gi|305664220|ref|YP_003860508.1| - 1.9 8.6 7.7 0.32 11.1 2.3 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2929) Fer4_13 PF13370.1 gi|305664221|ref|YP_003860509.1| - 5.5e-17 61.8 0.3 7.4e-17 61.4 0.2 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|305664221|ref|YP_003860509.1| - 6.1e-17 61.9 0.4 6.9e-17 61.7 0.3 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4 PF00037.22 gi|305664221|ref|YP_003860509.1| - 0.00079 18.9 4.7 0.0045 16.5 1.2 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_19 PF06902.6 gi|305664221|ref|YP_003860509.1| - 0.00091 19.0 3.1 0.012 15.4 2.1 2.1 1 1 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_21 PF14697.1 gi|305664221|ref|YP_003860509.1| - 0.028 14.2 0.5 0.052 13.4 0.1 1.7 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|305664221|ref|YP_003860509.1| - 0.04 13.8 0.6 0.04 13.8 0.4 1.8 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|305664221|ref|YP_003860509.1| - 0.062 13.1 1.8 0.11 12.2 1.2 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305664221|ref|YP_003860509.1| - 0.085 13.1 0.2 0.19 11.9 0.2 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305664221|ref|YP_003860509.1| - 0.15 11.9 1.7 0.55 10.1 0.2 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|305664221|ref|YP_003860509.1| - 0.28 11.6 3.6 0.51 10.8 0.7 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305664221|ref|YP_003860509.1| - 0.69 10.3 3.5 1.3 9.4 0.8 2.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Glyco_tranf_2_3 PF13641.1 gi|305664222|ref|YP_003860510.1| - 1.9e-28 99.8 0.0 2.5e-28 99.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|305664222|ref|YP_003860510.1| - 3e-14 53.1 0.0 4.4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|305664222|ref|YP_003860510.1| - 4.6e-12 45.9 0.5 6.9e-12 45.3 0.4 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Chitin_synth_2 PF03142.10 gi|305664222|ref|YP_003860510.1| - 0.00064 18.2 11.4 0.0026 16.2 0.0 3.2 3 1 1 4 4 4 2 Chitin synthase Surfac_D-trimer PF09006.6 gi|305664222|ref|YP_003860510.1| - 0.048 13.3 0.8 0.24 11.1 0.1 2.1 2 0 0 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation TrwB_AAD_bind PF10412.4 gi|305664222|ref|YP_003860510.1| - 0.16 10.5 0.1 0.24 9.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Pkinase PF00069.20 gi|305664223|ref|YP_003860511.1| - 0.01 14.9 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein kinase domain Imm35 PF15581.1 gi|305664223|ref|YP_003860511.1| - 0.1 12.6 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Immunity protein 35 tRNA-synt_1 PF00133.17 gi|305664224|ref|YP_003860512.1| - 1.1e-104 350.6 0.0 1.9e-103 346.5 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|305664224|ref|YP_003860512.1| - 3.3e-30 104.8 4.7 7.5e-30 103.7 3.3 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|305664224|ref|YP_003860512.1| - 2.1e-29 102.3 1.0 1.6e-14 53.3 0.0 4.2 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|305664224|ref|YP_003860512.1| - 0.0047 15.6 0.0 1.6 7.3 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|305664224|ref|YP_003860512.1| - 0.071 11.9 0.0 0.2 10.4 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (R) Phage_Capsid_P3 PF09018.6 gi|305664224|ref|YP_003860512.1| - 0.13 10.8 0.2 0.19 10.2 0.1 1.1 1 0 0 1 1 1 0 P3 major capsid protein zf-ribbon_3 PF13248.1 gi|305664224|ref|YP_003860512.1| - 0.15 11.2 9.1 0.58 9.4 0.7 3.6 3 1 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|305664224|ref|YP_003860512.1| - 0.18 11.6 4.3 26 4.7 1.8 3.3 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|305664224|ref|YP_003860512.1| - 2.2 7.8 11.0 0.22 11.0 0.7 3.4 4 0 0 4 4 4 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|305664224|ref|YP_003860512.1| - 6.4 6.8 13.1 2.3 8.2 0.4 4.0 3 1 1 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Glyco_transf_15 PF01793.11 gi|305664225|ref|YP_003860513.1| - 0.081 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycolipid 2-alpha-mannosyltransferase DUF2365 PF10157.4 gi|305664225|ref|YP_003860513.1| - 0.1 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2365) HD PF01966.17 gi|305664226|ref|YP_003860514.1| - 3.2e-05 23.9 0.7 5.5e-05 23.1 0.5 1.4 1 0 0 1 1 1 1 HD domain Carboxyl_trans PF01039.17 gi|305664228|ref|YP_003860516.1| - 8.2e-188 624.7 0.7 9.2e-188 624.5 0.5 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|305664228|ref|YP_003860516.1| - 4.7e-07 29.2 0.5 1.7e-06 27.4 0.0 2.0 2 1 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DnaB_bind PF10410.4 gi|305664228|ref|YP_003860516.1| - 0.14 12.1 0.1 0.41 10.6 0.1 1.8 1 0 0 1 1 1 0 DnaB-helicase binding domain of primase Biotin_lipoyl PF00364.17 gi|305664229|ref|YP_003860517.1| - 2.3e-20 71.9 0.3 1.3e-19 69.6 0.1 2.2 3 0 0 3 3 3 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|305664229|ref|YP_003860517.1| - 2e-13 49.7 0.0 3.9e-08 32.8 0.0 2.5 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD PF00529.15 gi|305664229|ref|YP_003860517.1| - 3.6e-08 33.0 0.1 0.00055 19.3 0.0 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|305664229|ref|YP_003860517.1| - 3.4e-06 26.4 0.6 5.8e-05 22.4 0.3 2.2 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|305664229|ref|YP_003860517.1| - 7.3e-05 23.0 0.1 0.0045 17.3 0.0 2.5 2 1 1 3 3 3 2 HlyD family secretion protein RnfC_N PF13375.1 gi|305664229|ref|YP_003860517.1| - 0.0013 18.4 0.0 0.0021 17.7 0.0 1.5 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|305664229|ref|YP_003860517.1| - 0.0023 17.6 3.1 0.0056 16.3 2.1 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) GCV_H PF01597.14 gi|305664229|ref|YP_003860517.1| - 0.035 13.7 0.1 0.093 12.4 0.0 1.7 1 1 1 2 2 2 0 Glycine cleavage H-protein Pribosyltran PF00156.22 gi|305664230|ref|YP_003860518.1| - 0.0016 18.1 0.0 0.0044 16.7 0.0 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain DS PF01916.12 gi|305664231|ref|YP_003860519.1| - 8.5e-63 212.2 0.4 1.2e-62 211.7 0.3 1.2 1 0 0 1 1 1 1 Deoxyhypusine synthase Glyco_hydro_57 PF03065.10 gi|305664232|ref|YP_003860520.1| - 9.4e-70 235.3 0.0 4.6e-68 229.7 0.0 2.3 1 1 0 1 1 1 1 Glycosyl hydrolase family 57 Glyco_hydro_57 PF03065.10 gi|305664233|ref|YP_003860521.1| - 2.1e-45 155.1 0.6 3.4e-45 154.5 0.4 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 NTP_transferase PF00483.18 gi|305664234|ref|YP_003860522.1| - 3.6e-37 127.9 0.0 4.6e-37 127.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.19 gi|305664234|ref|YP_003860522.1| - 1.2e-12 46.6 16.5 1.3e-05 24.4 1.0 3.9 1 1 3 4 4 4 3 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.2 gi|305664234|ref|YP_003860522.1| - 3.2e-06 27.3 0.0 5.5e-06 26.5 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Fucokinase PF07959.7 gi|305664234|ref|YP_003860522.1| - 0.099 11.1 0.4 0.14 10.6 0.3 1.2 1 0 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.1 gi|305664234|ref|YP_003860522.1| - 0.81 9.2 12.2 2.6 7.6 0.4 3.8 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase GalP_UDP_transf PF01087.17 gi|305664235|ref|YP_003860523.1| - 9.1e-28 97.5 0.0 4e-27 95.4 0.0 2.0 2 0 0 2 2 2 1 Galactose-1-phosphate uridyl transferase, N-terminal domain GalP_UDP_tr_C PF02744.12 gi|305664235|ref|YP_003860523.1| - 2.6e-19 69.3 0.0 4.5e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Galactose-1-phosphate uridyl transferase, C-terminal domain DcpS_C PF11969.3 gi|305664235|ref|YP_003860523.1| - 1.3e-10 41.4 1.2 9.6e-09 35.4 0.3 2.2 2 0 0 2 2 2 2 Scavenger mRNA decapping enzyme C-term binding HIT PF01230.18 gi|305664235|ref|YP_003860523.1| - 0.00033 21.1 0.0 0.15 12.5 0.0 2.3 2 0 0 2 2 2 2 HIT domain GHMP_kinases_N PF00288.21 gi|305664236|ref|YP_003860524.1| - 2.4e-18 65.9 0.4 2.4e-18 65.9 0.3 2.2 2 1 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|305664236|ref|YP_003860524.1| - 1.6e-12 47.4 0.0 5.6e-12 45.7 0.0 1.8 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|305664236|ref|YP_003860524.1| - 2e-11 42.9 0.0 4.1e-11 41.9 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Methyltrn_RNA_3 PF02598.12 gi|305664237|ref|YP_003860525.1| - 2.9e-54 184.4 0.1 3.5e-54 184.1 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methyltransferase SpoU_methylase PF00588.14 gi|305664237|ref|YP_003860525.1| - 0.015 15.2 0.0 0.4 10.5 0.0 2.1 2 0 0 2 2 2 0 SpoU rRNA Methylase family Met_10 PF02475.11 gi|305664238|ref|YP_003860526.1| - 8.2e-49 165.9 0.0 1.2e-48 165.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|305664238|ref|YP_003860526.1| - 3.3e-06 27.1 0.0 5.6e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|305664238|ref|YP_003860526.1| - 0.00016 21.1 0.0 0.00023 20.6 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|305664238|ref|YP_003860526.1| - 0.00062 19.3 0.0 0.00097 18.7 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_18 PF12847.2 gi|305664238|ref|YP_003860526.1| - 0.00086 19.8 0.0 0.0013 19.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|305664238|ref|YP_003860526.1| - 0.0012 18.3 0.0 0.0023 17.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|305664238|ref|YP_003860526.1| - 0.0035 16.5 0.0 0.0048 16.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) TRM PF02005.11 gi|305664238|ref|YP_003860526.1| - 0.079 11.8 0.0 0.095 11.5 0.0 1.3 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Arch_ATPase PF01637.13 gi|305664239|ref|YP_003860527.1| - 5.1e-10 39.4 0.1 3.3e-09 36.7 0.1 2.5 1 1 0 1 1 1 1 Archaeal ATPase HTH_24 PF13412.1 gi|305664239|ref|YP_003860527.1| - 1.7e-07 30.4 10.8 0.00054 19.2 0.1 4.4 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|305664239|ref|YP_003860527.1| - 6.8e-07 28.8 3.6 1.9e-06 27.4 0.1 2.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|305664239|ref|YP_003860527.1| - 1.2e-06 28.2 0.1 0.062 13.1 0.0 2.9 2 0 0 2 2 2 2 Helix-turn-helix domain AAA_22 PF13401.1 gi|305664239|ref|YP_003860527.1| - 6.8e-06 26.2 0.0 2.8e-05 24.2 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|305664239|ref|YP_003860527.1| - 7.2e-06 26.1 0.0 0.00093 19.2 0.0 2.7 1 1 0 1 1 1 1 AAA ATPase domain MarR_2 PF12802.2 gi|305664239|ref|YP_003860527.1| - 7.8e-05 22.2 2.2 0.033 13.8 0.0 3.4 4 0 0 4 4 4 1 MarR family NB-ARC PF00931.17 gi|305664239|ref|YP_003860527.1| - 0.00011 21.1 0.0 0.00024 20.0 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain TPR_12 PF13424.1 gi|305664239|ref|YP_003860527.1| - 0.00078 19.3 0.7 1.2 9.1 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat MarR PF01047.17 gi|305664239|ref|YP_003860527.1| - 0.0021 17.7 1.0 0.0068 16.0 0.0 2.4 3 0 0 3 3 3 1 MarR family AAA_5 PF07728.9 gi|305664239|ref|YP_003860527.1| - 0.0036 17.0 0.0 0.0093 15.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) TrmB PF01978.14 gi|305664239|ref|YP_003860527.1| - 0.0052 16.4 0.2 0.049 13.3 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Prismane PF03063.15 gi|305664239|ref|YP_003860527.1| - 0.0085 14.5 0.0 0.016 13.6 0.0 1.3 1 0 0 1 1 1 1 Prismane/CO dehydrogenase family PadR PF03551.9 gi|305664239|ref|YP_003860527.1| - 0.01 15.6 0.1 0.042 13.6 0.0 2.2 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family HTH_Crp_2 PF13545.1 gi|305664239|ref|YP_003860527.1| - 0.016 15.0 0.0 5.9 6.7 0.1 3.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|305664239|ref|YP_003860527.1| - 0.023 14.2 0.8 1.3 8.6 0.0 3.3 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|305664239|ref|YP_003860527.1| - 0.081 13.2 0.3 0.82 10.0 0.0 2.5 2 0 0 2 2 2 0 Winged helix DNA-binding domain TPR_2 PF07719.12 gi|305664239|ref|YP_003860527.1| - 0.16 11.9 1.9 22 5.3 0.0 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PYC_OADA PF02436.13 gi|305664239|ref|YP_003860527.1| - 0.17 11.2 0.0 5 6.4 0.0 2.3 2 0 0 2 2 2 0 Conserved carboxylase domain DUF4097 PF13349.1 gi|305664240|ref|YP_003860528.1| - 0.017 14.6 1.5 5.1 6.6 0.1 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4097) Transglut_core2 PF13369.1 gi|305664241|ref|YP_003860529.1| - 1.7e-05 24.3 0.0 2.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF553 PF04473.7 gi|305664241|ref|YP_003860529.1| - 0.016 14.4 0.0 0.032 13.4 0.0 1.4 1 0 0 1 1 1 0 Transglutaminase-like domain Trypan_PARP PF05887.6 gi|305664241|ref|YP_003860529.1| - 0.15 11.8 12.6 0.35 10.6 8.7 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Pex14_N PF04695.8 gi|305664241|ref|YP_003860529.1| - 4 7.4 7.6 10 6.1 5.3 1.6 1 0 0 1 1 1 0 Peroxisomal membrane anchor protein (Pex14p) conserved region PIN PF01850.16 gi|305664242|ref|YP_003860530.1| - 2.4e-08 34.3 0.4 3.6e-08 33.7 0.3 1.3 1 0 0 1 1 1 1 PIN domain DUF104 PF01954.11 gi|305664243|ref|YP_003860531.1| - 2.4e-16 59.5 3.6 2.9e-16 59.2 2.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF104 DUF217 PF02697.9 gi|305664243|ref|YP_003860531.1| - 0.09 13.0 0.5 0.13 12.5 0.4 1.3 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 DUF86 PF01934.12 gi|305664245|ref|YP_003860533.1| - 1.1e-15 57.3 0.4 1.3e-15 57.0 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.6 gi|305664245|ref|YP_003860533.1| - 0.091 12.5 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like NTP_transf_2 PF01909.18 gi|305664246|ref|YP_003860534.1| - 2.6e-08 34.0 1.5 4e-08 33.4 1.1 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain CortBP2 PF09727.4 gi|305664246|ref|YP_003860534.1| - 0.031 13.7 0.2 0.066 12.7 0.1 1.6 1 0 0 1 1 1 0 Cortactin-binding protein-2 NTP_transf_2 PF01909.18 gi|305664247|ref|YP_003860535.1| - 1.3e-05 25.4 0.3 1.8e-05 24.9 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF86 PF01934.12 gi|305664248|ref|YP_003860536.1| - 2.5e-18 65.8 0.2 3.1e-18 65.5 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 NTase_sub_bind PF08780.6 gi|305664248|ref|YP_003860536.1| - 0.038 13.7 0.0 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like CBM_4_9 PF02018.12 gi|305664250|ref|YP_003860538.1| - 2.1e-17 63.3 0.0 4.4e-17 62.3 0.0 1.5 1 0 0 1 1 1 1 Carbohydrate binding domain SBP_bac_5 PF00496.17 gi|305664251|ref|YP_003860539.1| - 5.2e-68 229.5 8.3 5.2e-68 229.5 5.8 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle UPF0154 PF03672.8 gi|305664251|ref|YP_003860539.1| - 0.0025 17.4 4.0 0.077 12.6 0.6 2.5 2 0 0 2 2 2 2 Uncharacterised protein family (UPF0154) PLRV_ORF5 PF01690.12 gi|305664251|ref|YP_003860539.1| - 0.055 12.6 17.1 0.079 12.0 11.8 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein DUF1180 PF06679.7 gi|305664251|ref|YP_003860539.1| - 0.38 10.6 6.6 0.63 9.9 4.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1180) DEC-1_N PF04625.8 gi|305664251|ref|YP_003860539.1| - 0.6 8.7 2.8 1.2 7.7 1.9 1.4 1 0 0 1 1 1 0 DEC-1 protein, N-terminal region DUF2232 PF09991.4 gi|305664251|ref|YP_003860539.1| - 1.7 7.5 12.4 0.035 13.0 1.6 2.9 4 0 0 4 4 4 0 Predicted membrane protein (DUF2232) ABC_tran PF00005.22 gi|305664252|ref|YP_003860540.1| - 5.5e-31 107.7 0.0 8.8e-31 107.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305664252|ref|YP_003860540.1| - 4.8e-17 62.0 0.0 7.8e-17 61.3 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305664252|ref|YP_003860540.1| - 3.9e-05 23.7 1.1 0.18 11.7 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|305664252|ref|YP_003860540.1| - 0.00029 20.9 0.2 0.0038 17.3 0.2 2.2 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|305664252|ref|YP_003860540.1| - 0.00046 20.0 0.4 0.0091 15.8 0.2 2.1 1 1 1 2 2 2 1 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|305664252|ref|YP_003860540.1| - 0.0047 16.4 0.0 0.0088 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain PRK PF00485.13 gi|305664252|ref|YP_003860540.1| - 0.005 16.4 0.0 0.0096 15.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_16 PF13191.1 gi|305664252|ref|YP_003860540.1| - 0.0054 16.7 0.0 0.0082 16.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|305664252|ref|YP_003860540.1| - 0.013 15.6 0.0 1 9.5 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|305664252|ref|YP_003860540.1| - 0.027 14.7 0.0 0.048 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.15 gi|305664252|ref|YP_003860540.1| - 0.031 12.9 0.0 0.043 12.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_17 PF13207.1 gi|305664252|ref|YP_003860540.1| - 0.033 15.0 0.4 0.072 13.9 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|305664252|ref|YP_003860540.1| - 0.037 13.4 0.0 0.057 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|305664252|ref|YP_003860540.1| - 0.054 12.3 0.1 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_19 PF13245.1 gi|305664252|ref|YP_003860540.1| - 0.072 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain KaiC PF06745.8 gi|305664252|ref|YP_003860540.1| - 0.1 11.7 0.2 0.22 10.6 0.1 1.6 1 0 0 1 1 1 0 KaiC Sigma54_activat PF00158.21 gi|305664252|ref|YP_003860540.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|305664252|ref|YP_003860540.1| - 0.12 11.6 0.1 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|305664252|ref|YP_003860540.1| - 0.13 11.6 0.0 0.27 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.1 gi|305664252|ref|YP_003860540.1| - 0.17 10.4 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) ABC_tran PF00005.22 gi|305664253|ref|YP_003860541.1| - 4.4e-23 82.0 0.0 6.4e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|305664253|ref|YP_003860541.1| - 2e-19 69.7 0.1 3.4e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|305664253|ref|YP_003860541.1| - 6.6e-07 29.5 1.2 1.4e-05 25.2 0.8 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|305664253|ref|YP_003860541.1| - 5.7e-06 26.4 0.2 4.3e-05 23.6 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305664253|ref|YP_003860541.1| - 0.0059 16.1 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305664253|ref|YP_003860541.1| - 0.015 15.2 0.1 0.047 13.6 0.1 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|305664253|ref|YP_003860541.1| - 0.021 14.2 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|305664253|ref|YP_003860541.1| - 0.025 14.2 0.3 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.17 gi|305664253|ref|YP_003860541.1| - 0.028 13.2 0.3 0.29 9.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain AAA_17 PF13207.1 gi|305664253|ref|YP_003860541.1| - 0.04 14.7 0.4 0.087 13.6 0.3 1.7 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|305664253|ref|YP_003860541.1| - 0.057 12.5 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 KaiC DUF258 PF03193.11 gi|305664253|ref|YP_003860541.1| - 0.059 12.5 0.0 0.1 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRK PF00485.13 gi|305664253|ref|YP_003860541.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.20 gi|305664253|ref|YP_003860541.1| - 0.087 12.3 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain RNA_helicase PF00910.17 gi|305664253|ref|YP_003860541.1| - 0.12 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase SMC_N PF02463.14 gi|305664253|ref|YP_003860541.1| - 0.15 11.2 0.4 2.7 7.1 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain BPD_transp_1 PF00528.17 gi|305664254|ref|YP_003860542.1| - 4.6e-23 81.6 18.1 4.6e-23 81.6 12.6 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|305664254|ref|YP_003860542.1| - 0.0055 16.0 2.4 0.0055 16.0 1.7 2.7 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C MRAP PF15183.1 gi|305664254|ref|YP_003860542.1| - 1.3 8.6 3.8 0.78 9.3 0.1 2.5 3 0 0 3 3 3 0 Melanocortin-2 receptor accessory protein family BPD_transp_1 PF00528.17 gi|305664255|ref|YP_003860543.1| - 2e-30 105.6 17.7 2e-30 105.6 12.2 1.8 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ThuA PF06283.6 gi|305664256|ref|YP_003860544.1| - 1.3e-57 195.0 0.1 1.4e-57 194.8 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation 4HBT PF03061.17 gi|305664257|ref|YP_003860545.1| - 0.00032 20.7 0.0 0.00051 20.1 0.0 1.4 1 1 0 1 1 1 1 Thioesterase superfamily DUF948 PF06103.6 gi|305664258|ref|YP_003860546.1| - 0.018 14.8 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Glycos_transf_1 PF00534.15 gi|305664261|ref|YP_003860549.1| - 1.2e-18 67.1 0.0 1.9e-18 66.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|305664261|ref|YP_003860549.1| - 6.8e-13 48.9 0.0 1.1e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 G-7-MTase PF12803.2 gi|305664261|ref|YP_003860549.1| - 0.12 11.4 1.1 0.18 10.9 0.7 1.2 1 0 0 1 1 1 0 mRNA (guanine-7-)methyltransferase (G-7-MTase) Glyco_trans_1_4 PF13692.1 gi|305664262|ref|YP_003860550.1| - 5.7e-08 32.9 0.0 1e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|305664262|ref|YP_003860550.1| - 1.9e-07 30.6 0.0 3.3e-07 29.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|305664262|ref|YP_003860550.1| - 3.6e-05 23.9 0.0 7.2e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|305664262|ref|YP_003860550.1| - 0.026 14.7 0.0 0.15 12.3 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|305664262|ref|YP_003860550.1| - 0.1 12.4 3.0 0.052 13.3 0.4 1.8 2 0 0 2 2 2 0 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|305664263|ref|YP_003860551.1| - 3.8e-08 32.9 0.0 7e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|305664263|ref|YP_003860551.1| - 9.5e-07 29.0 0.0 1.5e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|305664263|ref|YP_003860551.1| - 0.021 14.9 0.0 0.088 12.9 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain SKG6 PF08693.5 gi|305664265|ref|YP_003860553.1| - 0.18 11.1 1.9 0.58 9.5 1.4 1.9 1 0 0 1 1 1 0 Transmembrane alpha-helix domain IFT57 PF10498.4 gi|305664266|ref|YP_003860554.1| - 0.0015 17.3 1.1 0.0023 16.7 0.8 1.3 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 TelA PF05816.6 gi|305664266|ref|YP_003860554.1| - 0.029 13.0 3.6 0.11 11.1 0.8 2.5 1 1 2 3 3 3 0 Toxic anion resistance protein (TelA) RmuC PF02646.11 gi|305664266|ref|YP_003860554.1| - 0.035 12.9 1.5 0.25 10.1 0.2 2.2 1 1 1 2 2 2 0 RmuC family BAR PF03114.13 gi|305664266|ref|YP_003860554.1| - 0.038 13.4 0.9 0.064 12.7 0.2 1.7 2 0 0 2 2 2 0 BAR domain Lectin_N PF03954.9 gi|305664266|ref|YP_003860554.1| - 0.043 13.2 0.1 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain DUF16 PF01519.11 gi|305664266|ref|YP_003860554.1| - 0.047 13.8 1.4 0.59 10.3 1.0 2.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 DUF4279 PF14106.1 gi|305664266|ref|YP_003860554.1| - 0.13 12.1 1.8 6.3 6.7 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4279) DUF1664 PF07889.7 gi|305664266|ref|YP_003860554.1| - 0.17 11.7 4.2 0.21 11.3 0.5 2.4 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) DUF2948 PF11164.3 gi|305664266|ref|YP_003860554.1| - 0.18 11.4 2.1 0.26 10.8 1.0 1.6 2 0 0 2 2 1 0 Protein of unknown function (DUF2948) DUF342 PF03961.8 gi|305664266|ref|YP_003860554.1| - 0.18 10.1 2.0 0.3 9.4 0.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Corona_S2 PF01601.11 gi|305664266|ref|YP_003860554.1| - 0.2 9.6 0.0 0.28 9.2 0.0 1.1 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein BLOC1_2 PF10046.4 gi|305664266|ref|YP_003860554.1| - 0.22 11.6 1.8 1.2 9.2 0.1 2.8 2 1 2 4 4 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Hemagglutinin PF00509.13 gi|305664266|ref|YP_003860554.1| - 0.26 9.3 1.2 0.55 8.2 0.6 1.6 1 1 1 2 2 2 0 Haemagglutinin Syntaxin_2 PF14523.1 gi|305664266|ref|YP_003860554.1| - 0.28 11.2 2.6 7.7 6.6 0.7 3.0 2 1 1 3 3 3 0 Syntaxin-like protein Cor1 PF04803.7 gi|305664266|ref|YP_003860554.1| - 0.51 10.1 4.5 1.1 9.0 3.1 1.7 1 1 0 1 1 1 0 Cor1/Xlr/Xmr conserved region Fib_alpha PF08702.5 gi|305664266|ref|YP_003860554.1| - 0.52 10.4 1.7 1.7 8.7 0.2 2.2 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family Tropomyosin_1 PF12718.2 gi|305664266|ref|YP_003860554.1| - 0.64 9.8 5.0 0.18 11.6 1.2 1.8 2 1 0 2 2 2 0 Tropomyosin like Prefoldin PF02996.12 gi|305664266|ref|YP_003860554.1| - 0.83 9.3 4.7 3.4 7.3 0.2 3.4 3 1 1 4 4 4 0 Prefoldin subunit IncA PF04156.9 gi|305664266|ref|YP_003860554.1| - 0.86 9.1 12.6 0.1 12.1 3.5 2.4 2 1 1 3 3 3 0 IncA protein Vac_Fusion PF02346.11 gi|305664266|ref|YP_003860554.1| - 0.95 8.9 17.0 1.1 8.7 1.6 4.3 3 2 2 5 5 5 0 Chordopoxvirus fusion protein phiKZ_IP PF12699.2 gi|305664266|ref|YP_003860554.1| - 0.99 8.2 6.4 4 6.2 0.7 2.6 2 1 0 2 2 2 0 phiKZ-like phage internal head proteins Prefoldin_2 PF01920.15 gi|305664266|ref|YP_003860554.1| - 1.4 8.6 6.6 2.9 7.7 0.1 3.8 3 2 1 4 4 4 0 Prefoldin subunit PspB PF06667.7 gi|305664266|ref|YP_003860554.1| - 2.1 8.3 6.2 0.52 10.2 1.3 2.3 2 1 1 3 3 2 0 Phage shock protein B ADIP PF11559.3 gi|305664266|ref|YP_003860554.1| - 2.5 8.0 6.5 0.49 10.2 0.6 2.6 3 1 1 4 4 3 0 Afadin- and alpha -actinin-Binding Lebercilin PF15619.1 gi|305664266|ref|YP_003860554.1| - 2.7 7.3 9.0 1.3 8.4 3.7 2.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Occludin_ELL PF07303.8 gi|305664266|ref|YP_003860554.1| - 3.8 8.3 6.1 4.3 8.1 0.9 2.9 2 1 1 3 3 2 0 Occludin homology domain DUF3552 PF12072.3 gi|305664266|ref|YP_003860554.1| - 4.2 6.5 11.3 1.8 7.7 4.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3552) DUF656 PF04920.7 gi|305664269|ref|YP_003860557.1| - 0.047 13.3 1.6 0.1 12.3 0.9 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF656) DUF2393 PF09624.5 gi|305664270|ref|YP_003860558.1| - 1.4e-06 27.8 2.1 1.9e-06 27.5 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) Alpha_adaptinC2 PF02883.15 gi|305664270|ref|YP_003860558.1| - 0.0023 18.2 2.6 0.0031 17.8 1.8 1.2 1 0 0 1 1 1 1 Adaptin C-terminal domain DUF3888 PF13027.1 gi|305664270|ref|YP_003860558.1| - 0.03 14.1 0.1 0.052 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3888) Bundlin PF05307.6 gi|305664270|ref|YP_003860558.1| - 0.037 13.8 0.3 0.07 13.0 0.2 1.6 1 0 0 1 1 1 0 Bundlin CARDB PF07705.6 gi|305664270|ref|YP_003860558.1| - 0.046 13.7 1.5 0.1 12.6 0.8 1.7 1 1 1 2 2 2 0 CARDB DUF1628 PF07790.6 gi|305664270|ref|YP_003860558.1| - 0.17 12.6 1.3 0.3 11.8 0.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) MerR_1 PF13411.1 gi|305664271|ref|YP_003860559.1| - 0.017 14.8 0.4 0.6 9.9 0.1 2.3 2 0 0 2 2 2 0 MerR HTH family regulatory protein DHH PF01368.15 gi|305664272|ref|YP_003860560.1| - 0.0062 16.1 0.3 0.079 12.6 0.2 2.5 2 1 0 2 2 2 1 DHH family DDE_1 PF03184.14 gi|305664272|ref|YP_003860560.1| - 0.035 13.2 0.0 0.06 12.4 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease HTH_3 PF01381.17 gi|305664273|ref|YP_003860561.1| - 3.5e-11 42.7 0.0 1.4e-10 40.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|305664273|ref|YP_003860561.1| - 3.7e-09 36.5 0.0 9.7e-09 35.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|305664273|ref|YP_003860561.1| - 1.8e-05 24.8 0.0 3.3e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|305664273|ref|YP_003860561.1| - 0.005 16.6 0.0 0.028 14.2 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain Elf1 PF05129.8 gi|305664274|ref|YP_003860562.1| - 2.9e-10 39.6 0.7 4.3e-10 39.1 0.5 1.3 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like FdhE PF04216.7 gi|305664274|ref|YP_003860562.1| - 0.0003 20.6 0.3 0.00051 19.8 0.1 1.4 1 1 0 1 1 1 1 Protein involved in formate dehydrogenase formation Lar_restr_allev PF14354.1 gi|305664274|ref|YP_003860562.1| - 0.00031 20.9 0.3 0.00046 20.4 0.2 1.5 1 1 0 1 1 1 1 Restriction alleviation protein Lar DZR PF12773.2 gi|305664274|ref|YP_003860562.1| - 0.0056 16.4 0.3 0.0092 15.7 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cytochrome_C554 PF13435.1 gi|305664274|ref|YP_003860562.1| - 0.029 14.4 0.6 0.038 14.0 0.4 1.4 1 1 0 1 1 1 0 Cytochrome c554 and c-prime RecR PF02132.10 gi|305664274|ref|YP_003860562.1| - 0.047 13.1 1.9 0.064 12.7 0.0 2.0 2 0 0 2 2 2 0 RecR protein Terminase_GpA PF05876.7 gi|305664274|ref|YP_003860562.1| - 0.058 11.7 1.0 0.094 11.0 0.4 1.6 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) zf-C2H2_3 PF13878.1 gi|305664274|ref|YP_003860562.1| - 0.061 12.9 1.6 0.27 10.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF3716 PF12511.3 gi|305664274|ref|YP_003860562.1| - 0.075 12.6 0.4 0.12 12.0 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3716) FYVE PF01363.16 gi|305664274|ref|YP_003860562.1| - 0.08 12.8 0.1 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 FYVE zinc finger zinc_ribbon_4 PF13717.1 gi|305664274|ref|YP_003860562.1| - 0.23 11.1 2.0 6.2 6.6 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|305664274|ref|YP_003860562.1| - 0.26 10.8 1.8 7.7 6.1 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|305664274|ref|YP_003860562.1| - 0.28 11.0 1.8 0.5 10.2 0.0 2.1 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-RING_5 PF14634.1 gi|305664274|ref|YP_003860562.1| - 0.36 10.6 2.5 15 5.4 0.1 2.3 2 0 0 2 2 2 0 zinc-RING finger domain Ribosomal_L32p PF01783.18 gi|305664274|ref|YP_003860562.1| - 2.7 8.2 5.0 17 5.6 1.2 2.6 2 1 0 2 2 2 0 Ribosomal L32p protein family MMR_HSR1 PF01926.18 gi|305664275|ref|YP_003860563.1| - 6.5e-17 61.5 0.0 1.4e-16 60.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|305664275|ref|YP_003860563.1| - 1.1e-13 50.8 0.3 2.1e-13 49.9 0.2 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|305664275|ref|YP_003860563.1| - 1.1e-10 41.0 0.0 1.8e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|305664275|ref|YP_003860563.1| - 6.1e-05 22.5 0.3 0.0067 15.8 0.2 2.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain AAA_14 PF13173.1 gi|305664275|ref|YP_003860563.1| - 0.0007 19.4 0.2 0.082 12.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|305664275|ref|YP_003860563.1| - 0.0029 17.1 0.2 0.018 14.5 0.1 2.3 1 1 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|305664275|ref|YP_003860563.1| - 0.0053 16.7 0.0 0.049 13.6 0.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|305664275|ref|YP_003860563.1| - 0.011 15.4 0.1 0.026 14.2 0.0 1.6 1 0 0 1 1 1 0 NTPase SRPRB PF09439.5 gi|305664275|ref|YP_003860563.1| - 0.021 14.0 0.1 0.04 13.1 0.0 1.5 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_17 PF13207.1 gi|305664275|ref|YP_003860563.1| - 0.041 14.7 0.0 0.14 12.9 0.0 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|305664275|ref|YP_003860563.1| - 0.056 13.9 0.0 0.14 12.6 0.0 1.8 2 0 0 2 2 2 0 Miro-like protein DUF258 PF03193.11 gi|305664275|ref|YP_003860563.1| - 0.06 12.5 0.2 0.3 10.2 0.2 2.0 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Glyco_trans_2_3 PF13632.1 gi|305664276|ref|YP_003860564.1| - 5.8e-11 42.4 1.8 1.1e-10 41.6 1.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|305664276|ref|YP_003860564.1| - 1.8e-10 41.0 0.0 6.7e-10 39.1 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|305664276|ref|YP_003860564.1| - 0.00041 20.0 0.3 0.00066 19.3 0.2 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PAPS_reduct PF01507.14 gi|305664277|ref|YP_003860565.1| - 2e-40 138.4 0.0 4e-40 137.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family Fer4_7 PF12838.2 gi|305664277|ref|YP_003860565.1| - 1.7e-07 31.4 7.7 5.5e-07 29.8 5.3 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305664277|ref|YP_003860565.1| - 1e-06 28.6 6.0 0.0069 16.3 0.0 3.6 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|305664277|ref|YP_003860565.1| - 2.2e-06 27.8 10.6 1.5e-05 25.1 7.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305664277|ref|YP_003860565.1| - 2.6e-06 27.1 4.5 2.6e-06 27.1 3.1 2.3 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|305664277|ref|YP_003860565.1| - 1.7e-05 25.0 7.9 0.001 19.3 0.1 3.1 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305664277|ref|YP_003860565.1| - 5.4e-05 22.9 7.7 5.4e-05 22.9 5.3 2.4 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|305664277|ref|YP_003860565.1| - 0.00019 20.8 6.8 0.018 14.6 0.1 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain PUA PF01472.15 gi|305664277|ref|YP_003860565.1| - 0.0024 17.5 0.1 0.0046 16.6 0.0 1.4 1 0 0 1 1 1 1 PUA domain Fer4_18 PF13746.1 gi|305664277|ref|YP_003860565.1| - 0.0053 17.1 2.3 1.7 9.1 0.1 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|305664277|ref|YP_003860565.1| - 0.0063 16.3 17.0 0.018 14.9 0.4 3.2 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|305664277|ref|YP_003860565.1| - 0.0073 16.5 13.8 0.025 14.8 1.3 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|305664277|ref|YP_003860565.1| - 0.02 14.7 9.5 0.19 11.6 1.1 2.9 2 0 0 2 2 2 0 4Fe-4S binding domain ATP_bind_4 PF01902.12 gi|305664277|ref|YP_003860565.1| - 0.025 13.9 0.0 0.06 12.6 0.0 1.6 1 0 0 1 1 1 0 ATP-binding region Fer4_15 PF13459.1 gi|305664277|ref|YP_003860565.1| - 0.044 14.3 5.6 0.048 14.2 0.6 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain ThiI PF02568.9 gi|305664277|ref|YP_003860565.1| - 0.048 13.1 0.0 0.092 12.1 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) zf-RING_3 PF14369.1 gi|305664277|ref|YP_003860565.1| - 0.24 11.4 6.3 0.8 9.7 4.4 2.0 1 1 0 1 1 1 0 zinc-finger DUF4583 PF15190.1 gi|305664279|ref|YP_003860567.1| - 0.0069 16.0 8.0 0.017 14.7 0.8 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4583) tRNA_bind PF01588.15 gi|305664280|ref|YP_003860568.1| - 1.3e-28 98.6 0.0 1.5e-28 98.4 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|305664281|ref|YP_003860569.1| - 1e-184 614.9 2.4 1.3e-184 614.6 1.6 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|305664281|ref|YP_003860569.1| - 4.6e-29 101.1 1.7 1.1e-28 99.8 1.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|305664281|ref|YP_003860569.1| - 1.3e-24 86.6 3.0 2e-09 36.5 0.0 4.0 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|305664281|ref|YP_003860569.1| - 1.7e-08 33.9 0.9 0.0066 15.6 0.0 3.5 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.1 gi|305664281|ref|YP_003860569.1| - 8.6e-05 21.9 0.1 0.00018 20.8 0.1 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 E6 PF00518.12 gi|305664281|ref|YP_003860569.1| - 0.088 13.1 0.0 0.56 10.5 0.0 2.3 2 0 0 2 2 2 0 Early Protein (E6) Zn_Tnp_IS1595 PF12760.2 gi|305664281|ref|YP_003860569.1| - 0.12 12.2 6.4 13 5.7 0.0 3.6 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|305664281|ref|YP_003860569.1| - 0.39 9.9 6.3 4.1 6.6 0.1 3.9 4 0 0 4 4 4 0 Transcription factor zinc-finger DUF359 PF04019.7 gi|305664282|ref|YP_003860570.1| - 2e-24 85.2 0.1 2.7e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Baculo_PEP_C PF04513.7 gi|305664283|ref|YP_003860571.1| - 0.0081 15.9 2.2 0.0081 15.9 1.5 1.6 2 0 0 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus HypA PF01155.14 gi|305664284|ref|YP_003860572.1| - 4.8e-21 74.5 0.1 6.1e-21 74.2 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Desulfoferrod_N PF06397.7 gi|305664284|ref|YP_003860572.1| - 0.0072 15.6 0.8 0.024 14.0 0.1 2.0 2 0 0 2 2 2 1 Desulfoferrodoxin, N-terminal domain Smr PF01713.16 gi|305664284|ref|YP_003860572.1| - 0.0091 16.1 0.2 0.21 11.7 0.0 2.1 2 0 0 2 2 2 1 Smr domain TF_Zn_Ribbon PF08271.7 gi|305664284|ref|YP_003860572.1| - 0.02 14.1 1.6 0.5 9.7 0.0 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|305664284|ref|YP_003860572.1| - 0.034 14.2 3.3 0.56 10.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0547 PF10571.4 gi|305664284|ref|YP_003860572.1| - 0.049 13.3 2.1 2.9 7.6 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|305664284|ref|YP_003860572.1| - 0.05 13.4 0.2 3.5 7.5 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ISL3 PF14690.1 gi|305664284|ref|YP_003860572.1| - 0.06 13.3 0.3 1 9.4 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|305664284|ref|YP_003860572.1| - 0.073 12.7 0.1 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Putative transposase DNA-binding domain SpoVAD PF07451.6 gi|305664284|ref|YP_003860572.1| - 0.077 11.4 0.0 0.11 10.9 0.0 1.1 1 0 0 1 1 1 0 Stage V sporulation protein AD (SpoVAD) Zn-ribbon_8 PF09723.5 gi|305664284|ref|YP_003860572.1| - 0.092 12.7 0.2 2.8 7.9 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|305664284|ref|YP_003860572.1| - 0.1 12.9 1.6 3.8 7.9 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.1 gi|305664284|ref|YP_003860572.1| - 0.11 12.0 3.5 1.7 8.3 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|305664284|ref|YP_003860572.1| - 0.15 11.7 3.7 1.9 8.2 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain COMP PF11598.3 gi|305664284|ref|YP_003860572.1| - 0.15 12.1 0.3 0.15 12.1 0.2 2.5 3 0 0 3 3 2 0 Cartilage oligomeric matrix protein TFIIS_C PF01096.13 gi|305664284|ref|YP_003860572.1| - 0.21 11.2 5.2 5 6.8 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-TFIIB PF13453.1 gi|305664284|ref|YP_003860572.1| - 0.35 10.0 1.8 1.6 7.9 0.1 2.5 3 0 0 3 3 3 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|305664284|ref|YP_003860572.1| - 1.1 8.8 4.3 3.3 7.3 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|305664284|ref|YP_003860572.1| - 2.8 7.8 6.7 22 5.0 4.7 2.1 1 1 0 1 1 1 0 Rubredoxin CbiA PF01656.18 gi|305664285|ref|YP_003860573.1| - 1.3e-20 73.6 0.0 1.6e-20 73.3 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|305664285|ref|YP_003860573.1| - 7.5e-14 51.3 0.2 2.3e-13 49.7 0.1 1.7 1 1 1 2 2 2 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|305664285|ref|YP_003860573.1| - 1.5e-08 34.7 0.0 1.2e-07 31.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|305664285|ref|YP_003860573.1| - 1.4e-07 30.8 0.0 6.3e-06 25.4 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.1 gi|305664285|ref|YP_003860573.1| - 0.00032 20.3 0.3 0.23 11.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|305664285|ref|YP_003860573.1| - 0.0011 18.1 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ FRG PF08867.6 gi|305664285|ref|YP_003860573.1| - 0.13 12.8 0.0 0.21 12.0 0.0 1.3 1 0 0 1 1 1 0 FRG domain VirC1 PF07015.6 gi|305664285|ref|YP_003860573.1| - 0.14 11.1 0.0 0.24 10.4 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein HycI PF01750.13 gi|305664286|ref|YP_003860574.1| - 5.7e-10 38.8 0.3 7.5e-10 38.4 0.2 1.2 1 0 0 1 1 1 1 Hydrogenase maturation protease NADHdh PF00146.16 gi|305664287|ref|YP_003860575.1| - 2.4e-31 108.9 24.9 2.8e-31 108.7 17.3 1.0 1 0 0 1 1 1 1 NADH dehydrogenase DUF805 PF05656.9 gi|305664288|ref|YP_003860576.1| - 0.68 9.7 4.5 1.1 9.1 3.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF805) DUF843 PF05814.6 gi|305664288|ref|YP_003860576.1| - 3.3 7.5 5.6 3.6 7.4 0.2 2.1 2 0 0 2 2 2 0 Baculovirus protein of unknown function (DUF843) SHP PF03579.8 gi|305664288|ref|YP_003860576.1| - 9.3 5.6 8.4 2 7.8 0.4 2.2 2 0 0 2 2 2 0 Small hydrophobic protein Oxidored_q1 PF00361.15 gi|305664289|ref|YP_003860577.1| - 6.5e-45 153.4 20.7 6.5e-45 153.4 14.4 3.5 4 1 1 5 5 5 1 NADH-Ubiquinone/plastoquinone (complex I), various chains CDC50 PF03381.10 gi|305664289|ref|YP_003860577.1| - 0.067 12.3 0.6 0.21 10.7 0.4 1.8 1 0 0 1 1 1 0 LEM3 (ligand-effect modulator 3) family / CDC50 family MNHE PF01899.11 gi|305664290|ref|YP_003860578.1| - 3.4e-46 156.7 2.4 3.8e-46 156.5 1.6 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q2 PF00420.19 gi|305664291|ref|YP_003860579.1| - 2.8e-22 78.1 0.5 4.6e-22 77.4 0.4 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Sensor PF13796.1 gi|305664291|ref|YP_003860579.1| - 0.041 13.4 0.3 0.041 13.4 0.2 1.7 2 0 0 2 2 2 0 Putative sensor Mannosyl_trans PF05007.8 gi|305664291|ref|YP_003860579.1| - 0.12 12.0 3.7 0.05 13.2 0.3 1.7 1 1 0 2 2 2 0 Mannosyltransferase (PIG-M) Curto_V3 PF07436.6 gi|305664291|ref|YP_003860579.1| - 0.12 12.5 2.7 0.22 11.6 0.2 2.0 2 0 0 2 2 2 0 Curtovirus V3 protein MHYT PF03707.11 gi|305664291|ref|YP_003860579.1| - 0.16 12.1 8.0 1.6 8.8 0.8 2.4 2 1 0 2 2 2 0 Bacterial signalling protein N terminal repeat L_HGMIC_fpl PF10242.4 gi|305664291|ref|YP_003860579.1| - 1.3 9.0 6.0 2.2 8.2 2.2 1.9 2 0 0 2 2 2 0 Lipoma HMGIC fusion partner-like protein DUF3165 PF11364.3 gi|305664291|ref|YP_003860579.1| - 1.5 8.9 11.4 0.85 9.7 3.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3165) MnhB PF04039.8 gi|305664292|ref|YP_003860580.1| - 9.6e-17 61.2 17.8 9.6e-17 61.2 12.4 3.0 2 1 0 2 2 2 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF2106 PF09879.4 gi|305664292|ref|YP_003860580.1| - 0.013 14.8 1.4 0.027 13.8 0.1 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2106) DUF4040 PF13244.1 gi|305664293|ref|YP_003860581.1| - 1.8e-16 59.8 1.8 1.8e-16 59.8 1.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.15 gi|305664293|ref|YP_003860581.1| - 0.017 14.9 3.2 0.027 14.2 2.2 1.4 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Trep_Strep PF09605.5 gi|305664293|ref|YP_003860581.1| - 0.16 11.6 6.0 0.032 13.9 1.3 1.7 1 1 1 2 2 2 0 Hypothetical bacterial integral membrane protein (Trep_Strep) CreD PF06123.7 gi|305664293|ref|YP_003860581.1| - 5.9 5.3 6.3 5.6 5.3 4.3 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD PhaG_MnhG_YufB PF03334.9 gi|305664294|ref|YP_003860582.1| - 8.4e-20 70.6 10.7 1.2e-19 70.1 7.4 1.2 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF973 PF06157.6 gi|305664294|ref|YP_003860582.1| - 0.017 14.0 6.3 0.019 13.9 4.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF973) LrgA PF03788.9 gi|305664294|ref|YP_003860582.1| - 0.049 13.3 0.7 0.049 13.3 0.5 1.6 2 0 0 2 2 2 0 LrgA family MrpF_PhaF PF04066.8 gi|305664295|ref|YP_003860583.1| - 2.5e-07 30.8 2.0 2.5e-07 30.8 1.4 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF3040 PF11239.3 gi|305664295|ref|YP_003860583.1| - 0.039 13.9 1.6 0.044 13.8 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Ycf66_N PF07444.6 gi|305664295|ref|YP_003860583.1| - 0.17 11.6 4.2 0.19 11.4 2.9 1.2 1 0 0 1 1 1 0 Ycf66 protein N-terminus ABC2_membrane_6 PF06182.6 gi|305664295|ref|YP_003860583.1| - 1.8 8.0 11.1 2.1e+02 1.2 7.7 2.0 1 1 0 1 1 1 0 ABC-2 family transporter protein TcpE PF12648.2 gi|305664295|ref|YP_003860583.1| - 3.5 7.8 7.9 0.74 9.9 2.0 1.9 1 1 1 2 2 2 0 TcpE family DUF4153 PF13687.1 gi|305664295|ref|YP_003860583.1| - 4.2 6.8 14.5 17 4.8 9.9 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4153) Fer4 PF00037.22 gi|305664296|ref|YP_003860584.1| - 1e-12 47.0 18.2 1.4e-06 27.6 3.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|305664296|ref|YP_003860584.1| - 5.6e-11 42.6 11.4 7.9e-11 42.1 7.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|305664296|ref|YP_003860584.1| - 3.9e-10 39.4 9.2 6.4e-05 22.7 1.9 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|305664296|ref|YP_003860584.1| - 1.5e-09 37.4 8.7 6.5e-05 22.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|305664296|ref|YP_003860584.1| - 3.4e-09 36.0 12.3 5e-05 22.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|305664296|ref|YP_003860584.1| - 1.3e-08 34.9 11.9 3.2e-08 33.6 8.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|305664296|ref|YP_003860584.1| - 2.5e-08 33.4 19.8 1.8e-05 24.3 3.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|305664296|ref|YP_003860584.1| - 3.9e-07 30.3 6.4 0.0024 18.2 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|305664296|ref|YP_003860584.1| - 5.6e-07 29.8 4.1 0.0049 17.1 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|305664296|ref|YP_003860584.1| - 7e-07 29.1 11.7 1.8e-06 27.8 8.3 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|305664296|ref|YP_003860584.1| - 6.3e-06 26.8 14.1 0.00012 22.7 10.3 2.1 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|305664296|ref|YP_003860584.1| - 0.00028 21.3 6.2 0.11 13.0 1.0 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|305664296|ref|YP_003860584.1| - 0.0011 19.3 5.0 0.0011 19.3 3.4 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_4 PF12800.2 gi|305664296|ref|YP_003860584.1| - 0.0024 18.0 15.0 0.11 12.9 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_20 PF14691.1 gi|305664296|ref|YP_003860584.1| - 0.097 12.3 0.4 0.097 12.3 0.3 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_13 PF13370.1 gi|305664296|ref|YP_003860584.1| - 1.4 9.3 12.0 4.6 7.7 3.7 2.3 2 0 0 2 2 2 0 4Fe-4S single cluster domain Complex1_49kDa PF00346.14 gi|305664297|ref|YP_003860585.1| - 5e-50 170.0 0.0 1.6e-32 112.6 0.0 2.3 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit NiFeSe_Hases PF00374.14 gi|305664297|ref|YP_003860585.1| - 2.4e-12 46.4 0.7 5.4e-08 32.0 0.0 3.8 1 1 1 3 3 3 3 Nickel-dependent hydrogenase Complex1_30kDa PF00329.14 gi|305664298|ref|YP_003860586.1| - 7e-21 74.4 0.0 8.5e-21 74.1 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Oxidored_q6 PF01058.17 gi|305664299|ref|YP_003860587.1| - 6.5e-30 103.4 0.1 7.6e-30 103.1 0.0 1.0 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit RE_NgoFVII PF09565.5 gi|305664299|ref|YP_003860587.1| - 0.019 13.9 0.0 0.024 13.6 0.0 1.1 1 0 0 1 1 1 0 NgoFVII restriction endonuclease Sua5_yciO_yrdC PF01300.13 gi|305664300|ref|YP_003860588.1| - 7.1e-47 158.9 0.0 1.1e-46 158.3 0.0 1.3 1 0 0 1 1 1 1 Telomere recombination zf-HYPF PF07503.7 gi|305664300|ref|YP_003860588.1| - 5.9e-30 102.3 10.0 5.9e-16 57.5 2.2 2.4 2 0 0 2 2 2 2 HypF finger Acylphosphatase PF00708.13 gi|305664300|ref|YP_003860588.1| - 2.6e-18 65.8 0.0 4.5e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 Acylphosphatase FpoO PF10621.4 gi|305664300|ref|YP_003860588.1| - 0.16 12.0 0.3 0.48 10.5 0.2 1.7 1 1 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO AIRS_C PF02769.17 gi|305664301|ref|YP_003860589.1| - 1.3e-21 77.1 0.0 2e-21 76.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|305664301|ref|YP_003860589.1| - 1.7e-19 69.8 0.0 2.6e-18 66.0 0.0 2.3 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PASTA PF03793.14 gi|305664301|ref|YP_003860589.1| - 0.062 12.9 0.3 45 3.7 0.0 3.3 2 1 1 3 3 3 0 PASTA domain DAO PF01266.19 gi|305664302|ref|YP_003860590.1| - 1.5e-05 24.1 0.0 0.00012 21.1 0.0 1.9 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|305664302|ref|YP_003860590.1| - 0.00015 21.6 0.0 0.0004 20.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|305664302|ref|YP_003860590.1| - 0.00096 17.8 0.0 0.015 13.9 0.0 2.0 2 0 0 2 2 2 1 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|305664302|ref|YP_003860590.1| - 0.05 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 FAD-NAD(P)-binding HI0933_like PF03486.9 gi|305664302|ref|YP_003860590.1| - 0.053 11.9 0.0 0.094 11.1 0.0 1.4 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.1 gi|305664302|ref|YP_003860590.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|305664302|ref|YP_003860590.1| - 0.11 11.5 0.0 0.2 10.6 0.0 1.4 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|305664302|ref|YP_003860590.1| - 0.15 11.9 0.2 0.26 11.1 0.1 1.5 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF2172 PF09940.4 gi|305664303|ref|YP_003860591.1| - 1.5e-09 36.6 0.0 4.1e-09 35.3 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF2172) Peptidase_M28 PF04389.12 gi|305664303|ref|YP_003860591.1| - 1.6e-09 37.7 0.0 4e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|305664303|ref|YP_003860591.1| - 0.00016 21.3 0.0 0.00086 18.9 0.0 2.2 2 0 0 2 2 2 1 PA domain ThiF PF00899.16 gi|305664304|ref|YP_003860592.1| - 3.8e-47 159.5 0.0 6e-47 158.8 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|305664304|ref|YP_003860592.1| - 1.3e-22 79.1 0.1 2.1e-22 78.4 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|305664304|ref|YP_003860592.1| - 0.00022 21.3 0.6 0.002 18.2 0.3 2.1 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|305664304|ref|YP_003860592.1| - 0.017 14.2 0.1 0.41 9.7 0.0 2.2 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|305664304|ref|YP_003860592.1| - 0.03 14.5 0.0 0.051 13.8 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.19 gi|305664304|ref|YP_003860592.1| - 0.033 13.0 0.0 0.049 12.5 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase tRNA-synt_2b PF00587.20 gi|305664305|ref|YP_003860593.1| - 4.4e-12 45.9 0.0 8.3e-12 45.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) OMPdecase PF00215.19 gi|305664306|ref|YP_003860594.1| - 3.9e-17 62.4 1.2 7.1e-17 61.5 0.9 1.4 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family ThiG PF05690.9 gi|305664306|ref|YP_003860594.1| - 3.1e-08 32.9 0.1 4.9e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.16 gi|305664306|ref|YP_003860594.1| - 1.6e-06 27.5 0.6 3.9e-06 26.3 0.1 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein Ribul_P_3_epim PF00834.14 gi|305664306|ref|YP_003860594.1| - 1e-05 24.7 1.7 2.5e-05 23.4 0.4 2.2 2 1 0 2 2 2 1 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|305664306|ref|YP_003860594.1| - 0.00017 20.8 2.7 0.002 17.3 0.1 2.1 1 1 0 2 2 2 1 PcrB family Trp_syntA PF00290.15 gi|305664306|ref|YP_003860594.1| - 0.00019 20.0 0.6 0.21 10.0 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain QRPTase_C PF01729.14 gi|305664306|ref|YP_003860594.1| - 0.00025 20.6 1.3 0.00073 19.1 0.3 2.0 1 1 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|305664306|ref|YP_003860594.1| - 0.00055 18.9 2.0 0.0016 17.4 0.6 2.3 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase IGPS PF00218.16 gi|305664306|ref|YP_003860594.1| - 0.001 18.1 0.2 0.0013 17.8 0.1 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase TIM-br_sig_trns PF09370.5 gi|305664306|ref|YP_003860594.1| - 0.0018 17.4 0.1 0.15 11.1 0.0 2.4 2 0 0 2 2 2 1 TIM-barrel signal transduction protein Aldolase PF01081.14 gi|305664306|ref|YP_003860594.1| - 0.0056 15.8 0.2 0.29 10.2 0.0 2.2 2 0 0 2 2 2 1 KDPG and KHG aldolase DeoC PF01791.4 gi|305664306|ref|YP_003860594.1| - 0.016 14.5 1.9 0.19 10.9 0.6 2.8 1 1 1 2 2 2 0 DeoC/LacD family aldolase ADH_zinc_N PF00107.21 gi|305664306|ref|YP_003860594.1| - 0.023 14.2 0.2 2.3 7.7 0.0 2.7 2 1 0 2 2 2 0 Zinc-binding dehydrogenase TMP-TENI PF02581.12 gi|305664306|ref|YP_003860594.1| - 0.023 13.7 2.2 0.12 11.4 0.2 2.3 1 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI Pterin_bind PF00809.17 gi|305664306|ref|YP_003860594.1| - 0.025 13.9 0.6 0.13 11.6 0.2 2.4 1 1 1 2 2 2 0 Pterin binding enzyme PALP PF00291.20 gi|305664306|ref|YP_003860594.1| - 0.029 13.6 0.1 0.067 12.4 0.1 1.6 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme HMGL-like PF00682.14 gi|305664306|ref|YP_003860594.1| - 0.077 12.6 0.0 0.17 11.5 0.0 1.7 1 1 0 1 1 1 0 HMGL-like DUF59 PF01883.14 gi|305664307|ref|YP_003860595.1| - 2.2e-17 62.7 0.0 2.8e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF59 Proteasome PF00227.21 gi|305664308|ref|YP_003860596.1| - 1.5e-51 174.3 2.8 1.7e-51 174.2 1.9 1.0 1 0 0 1 1 1 1 Proteasome subunit Endonuclease_5 PF04493.9 gi|305664309|ref|YP_003860597.1| - 8.1e-47 159.2 0.2 9.9e-47 158.9 0.2 1.0 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|305664309|ref|YP_003860597.1| - 0.084 11.9 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF99 PBP_like PF12727.2 gi|305664310|ref|YP_003860598.1| - 3e-50 169.8 0.0 6.1e-50 168.8 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain MoeA_N PF03453.12 gi|305664310|ref|YP_003860598.1| - 2.8e-45 153.5 0.1 4.2e-45 152.9 0.1 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|305664310|ref|YP_003860598.1| - 3.1e-29 101.2 0.1 6.7e-29 100.1 0.0 1.6 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|305664310|ref|YP_003860598.1| - 2.8e-14 52.8 0.0 8.3e-14 51.3 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.1 gi|305664310|ref|YP_003860598.1| - 9e-11 41.8 0.0 1.4e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.2 gi|305664310|ref|YP_003860598.1| - 0.0014 18.0 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MoeA_N PF03453.12 gi|305664311|ref|YP_003860599.1| - 2e-35 121.5 0.1 4e-35 120.5 0.0 1.6 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|305664311|ref|YP_003860599.1| - 2.1e-26 92.0 0.1 3.2e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|305664311|ref|YP_003860599.1| - 2.3e-16 59.4 0.0 4.7e-16 58.5 0.0 1.6 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) HhH-GPD PF00730.20 gi|305664312|ref|YP_003860600.1| - 8.7e-15 54.9 0.0 1.2e-14 54.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|305664312|ref|YP_003860600.1| - 0.0082 16.2 11.9 0.016 15.3 8.3 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|305664312|ref|YP_003860600.1| - 0.044 13.4 0.0 1.7 8.4 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|305664312|ref|YP_003860600.1| - 0.094 12.9 0.0 0.2 11.8 0.0 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain Acid_phosphat_B PF03767.9 gi|305664313|ref|YP_003860601.1| - 7e-05 22.3 0.0 8.7e-05 21.9 0.0 1.1 1 0 0 1 1 1 1 HAD superfamily, subfamily IIIB (Acid phosphatase) Hydrolase_6 PF13344.1 gi|305664313|ref|YP_003860601.1| - 0.0025 17.6 0.0 0.011 15.5 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Glycos_transf_2 PF00535.21 gi|305664314|ref|YP_003860602.1| - 5.5e-25 87.9 0.1 9.5e-25 87.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 GtrA PF04138.9 gi|305664314|ref|YP_003860602.1| - 1.7e-20 73.0 7.4 3e-20 72.3 5.1 1.4 1 0 0 1 1 1 1 GtrA-like protein Glyco_tranf_2_3 PF13641.1 gi|305664314|ref|YP_003860602.1| - 7.9e-06 25.8 0.0 1.2e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|305664314|ref|YP_003860602.1| - 0.00042 19.6 0.1 0.0021 17.3 0.0 2.1 2 1 1 3 3 3 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|305664314|ref|YP_003860602.1| - 0.0063 15.6 0.1 0.0091 15.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 NTP_transferase PF00483.18 gi|305664315|ref|YP_003860603.1| - 8.3e-35 120.2 0.0 9.4e-35 120.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|305664315|ref|YP_003860603.1| - 8.1e-11 42.2 0.0 1.3e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|305664315|ref|YP_003860603.1| - 0.0015 18.0 0.0 0.0033 16.9 0.0 1.5 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C1_1 PF00130.17 gi|305664316|ref|YP_003860604.1| - 0.00031 20.4 1.1 0.00047 19.8 0.8 1.2 1 0 0 1 1 1 1 Phorbol esters/diacylglycerol binding domain (C1 domain) PHD PF00628.24 gi|305664316|ref|YP_003860604.1| - 0.0004 20.0 3.7 0.00058 19.4 2.5 1.3 1 0 0 1 1 1 1 PHD-finger Prok-RING_1 PF14446.1 gi|305664316|ref|YP_003860604.1| - 0.00042 20.0 6.2 0.00044 19.9 3.9 1.3 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 DEAD_2 PF06733.10 gi|305664316|ref|YP_003860604.1| - 0.00089 18.7 2.3 0.0012 18.2 1.6 1.2 1 0 0 1 1 1 1 DEAD_2 Rad50_zn_hook PF04423.9 gi|305664316|ref|YP_003860604.1| - 0.001 18.4 0.6 0.26 10.7 0.1 2.4 2 0 0 2 2 2 2 Rad50 zinc hook motif zf-RING_2 PF13639.1 gi|305664316|ref|YP_003860604.1| - 0.0021 17.8 3.2 0.0033 17.2 2.2 1.3 1 0 0 1 1 1 1 Ring finger domain zf-RING-like PF08746.6 gi|305664316|ref|YP_003860604.1| - 0.0042 17.0 3.0 0.0084 16.0 2.1 1.5 1 1 0 1 1 1 1 RING-like domain PHD_2 PF13831.1 gi|305664316|ref|YP_003860604.1| - 0.0056 15.9 0.9 0.0056 15.9 0.6 1.7 2 0 0 2 2 2 1 PHD-finger C1_3 PF07649.7 gi|305664316|ref|YP_003860604.1| - 0.024 14.6 3.8 0.042 13.8 2.6 1.5 1 0 0 1 1 1 0 C1-like domain zf-HC5HC2H PF13771.1 gi|305664316|ref|YP_003860604.1| - 0.045 13.9 1.9 0.069 13.2 1.3 1.4 1 0 0 1 1 1 0 PHD-like zinc-binding domain C1_2 PF03107.11 gi|305664316|ref|YP_003860604.1| - 0.05 13.7 5.7 0.073 13.1 4.0 1.3 1 0 0 1 1 1 0 C1 domain FancD2 PF14631.1 gi|305664316|ref|YP_003860604.1| - 0.07 10.2 0.1 0.081 10.0 0.1 1.0 1 0 0 1 1 1 0 Fanconi anaemia protein FancD2 nuclease RecR PF02132.10 gi|305664316|ref|YP_003860604.1| - 0.22 10.9 5.8 1.9 7.9 0.4 2.5 1 1 1 2 2 2 0 RecR protein zf-rbx1 PF12678.2 gi|305664316|ref|YP_003860604.1| - 2.1 8.5 6.7 26 5.0 4.7 2.1 1 1 0 1 1 1 0 RING-H2 zinc finger ABC_tran PF00005.22 gi|305664317|ref|YP_003860605.1| - 3.2e-33 114.9 0.0 4.3e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|305664317|ref|YP_003860605.1| - 6.5e-13 49.2 0.6 2.9e-11 43.8 0.4 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|305664317|ref|YP_003860605.1| - 3.4e-07 29.7 0.1 0.00011 21.5 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|305664317|ref|YP_003860605.1| - 4.8e-05 24.1 0.3 6.5e-05 23.7 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|305664317|ref|YP_003860605.1| - 5.6e-05 22.7 0.2 0.12 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain AAA_15 PF13175.1 gi|305664317|ref|YP_003860605.1| - 7.9e-05 21.8 0.2 0.015 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|305664317|ref|YP_003860605.1| - 0.0002 21.5 0.5 0.0033 17.5 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|305664317|ref|YP_003860605.1| - 0.00086 19.6 1.4 0.0094 16.2 1.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|305664317|ref|YP_003860605.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|305664317|ref|YP_003860605.1| - 0.002 18.1 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|305664317|ref|YP_003860605.1| - 0.0024 17.7 0.1 0.017 15.0 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|305664317|ref|YP_003860605.1| - 0.004 17.4 0.0 0.008 16.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|305664317|ref|YP_003860605.1| - 0.0063 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Rad17 PF03215.10 gi|305664317|ref|YP_003860605.1| - 0.0098 14.6 0.0 0.016 13.8 0.0 1.3 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein ArgK PF03308.11 gi|305664317|ref|YP_003860605.1| - 0.01 14.6 0.0 0.015 14.1 0.0 1.2 1 0 0 1 1 1 0 ArgK protein T2SE PF00437.15 gi|305664317|ref|YP_003860605.1| - 0.01 14.7 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|305664317|ref|YP_003860605.1| - 0.017 15.0 0.0 0.058 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|305664317|ref|YP_003860605.1| - 0.024 14.0 0.0 0.13 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|305664317|ref|YP_003860605.1| - 0.028 14.9 0.0 0.06 13.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein NB-ARC PF00931.17 gi|305664317|ref|YP_003860605.1| - 0.045 12.6 0.3 0.08 11.7 0.1 1.4 2 0 0 2 2 2 0 NB-ARC domain NACHT PF05729.7 gi|305664317|ref|YP_003860605.1| - 0.045 13.4 0.1 0.089 12.4 0.0 1.5 2 0 0 2 2 1 0 NACHT domain AAA_14 PF13173.1 gi|305664317|ref|YP_003860605.1| - 0.046 13.6 0.1 0.13 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|305664317|ref|YP_003860605.1| - 0.058 12.3 0.0 0.097 11.6 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain Arch_ATPase PF01637.13 gi|305664317|ref|YP_003860605.1| - 0.079 12.6 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase MobB PF03205.9 gi|305664317|ref|YP_003860605.1| - 0.088 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_30 PF13604.1 gi|305664317|ref|YP_003860605.1| - 0.12 11.8 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|305664317|ref|YP_003860605.1| - 0.15 11.8 0.0 0.61 9.8 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain DUF3670 PF12419.3 gi|305664320|ref|YP_003860608.1| - 0.2 11.0 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 SNF2 Helicase protein Auto_anti-p27 PF06677.7 gi|305664321|ref|YP_003860609.1| - 7.1e-16 57.6 0.1 1.2e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.11 gi|305664321|ref|YP_003860609.1| - 0.0023 17.5 2.4 0.0046 16.6 1.6 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|305664321|ref|YP_003860609.1| - 0.036 13.3 0.2 0.073 12.4 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding Rad50_zn_hook PF04423.9 gi|305664321|ref|YP_003860609.1| - 0.06 12.8 1.6 0.26 10.7 0.0 2.8 4 0 0 4 4 4 0 Rad50 zinc hook motif PapG_C PF03628.8 gi|305664321|ref|YP_003860609.1| - 0.091 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 PapG chaperone-binding domain RPA_interact_C PF14768.1 gi|305664321|ref|YP_003860609.1| - 0.1 12.9 0.1 0.16 12.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Chordopox_A30L PF06015.7 gi|305664321|ref|YP_003860609.1| - 0.11 12.0 0.1 0.11 12.0 0.1 1.8 2 0 0 2 2 2 0 Chordopoxvirus A30L protein KN_motif PF12075.3 gi|305664321|ref|YP_003860609.1| - 0.12 12.1 0.2 11 5.9 0.0 2.5 2 0 0 2 2 2 0 KN motif zf-ribbon_3 PF13248.1 gi|305664321|ref|YP_003860609.1| - 0.15 11.2 0.9 0.3 10.3 0.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain DUF723 PF05265.8 gi|305664321|ref|YP_003860609.1| - 0.2 11.4 1.7 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF723) DUF126 PF01989.11 gi|305664322|ref|YP_003860610.1| - 1.3e-26 92.0 0.8 3.5e-26 90.7 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF126 Tox-PL-2 PF15643.1 gi|305664322|ref|YP_003860610.1| - 0.057 13.3 0.1 0.092 12.7 0.1 1.5 1 1 0 1 1 1 0 Papain fold toxin 2 DUF521 PF04412.8 gi|305664323|ref|YP_003860611.1| - 1.4e-90 303.7 0.0 1.6e-90 303.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF521) UbiD PF01977.11 gi|305664324|ref|YP_003860612.1| - 4.6e-90 302.0 0.0 5.2e-90 301.8 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MobB PF03205.9 gi|305664325|ref|YP_003860613.1| - 4.4e-07 29.6 0.0 9.1e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B CbiA PF01656.18 gi|305664325|ref|YP_003860613.1| - 0.00041 19.7 0.1 0.0014 18.0 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain PduV-EutP PF10662.4 gi|305664325|ref|YP_003860613.1| - 0.0054 16.2 0.1 0.19 11.2 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation FtsK_SpoIIIE PF01580.13 gi|305664325|ref|YP_003860613.1| - 0.07 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF460 PF04312.8 gi|305664326|ref|YP_003860614.1| - 0.00034 20.1 0.3 0.00061 19.3 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF460) PWI PF01480.12 gi|305664326|ref|YP_003860614.1| - 0.081 13.0 0.1 0.32 11.1 0.0 2.1 1 1 0 1 1 1 0 PWI domain bPH_4 PF06713.6 gi|305664326|ref|YP_003860614.1| - 4.1 7.3 6.5 6.6 6.6 1.7 2.6 1 1 1 2 2 2 0 Bacterial PH domain CDP-OH_P_transf PF01066.16 gi|305664327|ref|YP_003860615.1| - 1.6e-14 54.0 9.6 1.6e-13 50.7 6.6 2.4 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase OAD_gamma PF04277.8 gi|305664327|ref|YP_003860615.1| - 7 7.1 8.9 0.36 11.2 0.6 2.6 2 1 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Ribosomal_S26e PF01283.14 gi|305664328|ref|YP_003860616.1| - 1.4e-31 109.0 3.4 1.5e-31 108.9 2.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e DUF2116 PF09889.4 gi|305664328|ref|YP_003860616.1| - 0.021 14.5 0.2 0.021 14.5 0.2 2.0 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DZR PF12773.2 gi|305664328|ref|YP_003860616.1| - 0.049 13.4 0.8 0.3 10.9 0.1 2.0 2 0 0 2 2 2 0 Double zinc ribbon zf-dskA_traR PF01258.12 gi|305664328|ref|YP_003860616.1| - 0.17 11.6 4.0 0.94 9.2 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Auto_anti-p27 PF06677.7 gi|305664328|ref|YP_003860616.1| - 0.44 10.3 2.6 2.3 8.0 0.2 2.3 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) tRNA-synt_2b PF00587.20 gi|305664329|ref|YP_003860617.1| - 6.6e-24 84.4 1.6 1.1e-23 83.7 0.5 1.8 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|305664329|ref|YP_003860617.1| - 1.7e-17 63.1 1.4 2.7e-17 62.4 0.4 1.9 2 0 0 2 2 2 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|305664329|ref|YP_003860617.1| - 3.2e-09 36.5 0.0 5.5e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal DUF4303 PF14136.1 gi|305664329|ref|YP_003860617.1| - 0.056 13.0 0.1 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4303) Elf1 PF05129.8 gi|305664329|ref|YP_003860617.1| - 0.062 12.9 0.2 1.6 8.4 0.0 2.7 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like GCD14 PF08704.5 gi|305664330|ref|YP_003860618.1| - 1.2e-30 106.8 0.0 2.8e-28 99.0 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit PCMT PF01135.14 gi|305664330|ref|YP_003860618.1| - 2.1e-12 47.0 0.0 2.7e-12 46.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|305664330|ref|YP_003860618.1| - 2.9e-10 40.7 0.0 5.4e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|305664330|ref|YP_003860618.1| - 8.7e-10 38.3 0.0 1.7e-09 37.4 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|305664330|ref|YP_003860618.1| - 1.3e-07 31.6 0.0 2.9e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|305664330|ref|YP_003860618.1| - 1.5e-07 30.6 0.0 2.3e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|305664330|ref|YP_003860618.1| - 9.8e-06 26.3 0.0 3.8e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|305664330|ref|YP_003860618.1| - 1.7e-05 24.0 0.0 2.6e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|305664330|ref|YP_003860618.1| - 3.1e-05 23.3 0.0 4.9e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|305664330|ref|YP_003860618.1| - 6.1e-05 22.6 0.0 0.0056 16.2 0.0 2.1 1 1 1 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|305664330|ref|YP_003860618.1| - 6.1e-05 23.3 0.0 9e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|305664330|ref|YP_003860618.1| - 9.9e-05 22.1 0.0 0.0013 18.5 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|305664330|ref|YP_003860618.1| - 0.00014 22.2 0.0 0.00034 21.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|305664330|ref|YP_003860618.1| - 0.00018 21.9 0.0 0.00074 19.9 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|305664330|ref|YP_003860618.1| - 0.0016 17.4 0.0 0.0025 16.8 0.0 1.3 1 0 0 1 1 1 1 Putative methyltransferase UPF0020 PF01170.13 gi|305664330|ref|YP_003860618.1| - 0.0027 17.2 0.0 0.0058 16.2 0.0 1.5 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|305664330|ref|YP_003860618.1| - 0.0064 15.5 0.0 0.0096 14.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase PrmA PF06325.8 gi|305664330|ref|YP_003860618.1| - 0.013 14.6 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.12 gi|305664330|ref|YP_003860618.1| - 0.067 12.0 0.1 0.095 11.6 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin rRNA_methylase PF06962.7 gi|305664330|ref|YP_003860618.1| - 0.078 12.6 0.0 11 5.6 0.0 2.4 2 0 0 2 2 2 0 Putative rRNA methylase CMAS PF02353.15 gi|305664330|ref|YP_003860618.1| - 0.091 11.8 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.4 gi|305664330|ref|YP_003860618.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Met_10 PF02475.11 gi|305664330|ref|YP_003860618.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein RHH_1 PF01402.16 gi|305664331|ref|YP_003860619.1| - 7.5e-09 35.1 0.9 1.2e-08 34.4 0.6 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|305664331|ref|YP_003860619.1| - 6.7e-07 29.3 0.0 7.1e-07 29.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) DUF2191 PF09957.4 gi|305664331|ref|YP_003860619.1| - 0.0029 17.3 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2191) Smoothelin PF12510.3 gi|305664331|ref|YP_003860619.1| - 0.066 13.0 0.3 0.12 12.2 0.2 1.4 1 0 0 1 1 1 0 Smoothelin cytoskeleton protein Ribosomal_S25 PF03297.10 gi|305664332|ref|YP_003860620.1| - 1.1e-10 41.4 4.9 1.4e-10 41.1 3.4 1.1 1 0 0 1 1 1 1 S25 ribosomal protein HTH_Crp_2 PF13545.1 gi|305664332|ref|YP_003860620.1| - 0.00034 20.3 0.3 0.00048 19.8 0.2 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|305664332|ref|YP_003860620.1| - 0.011 15.4 0.7 0.02 14.5 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Topoisom_I_N PF02919.10 gi|305664332|ref|YP_003860620.1| - 0.037 13.3 0.7 0.041 13.1 0.5 1.1 1 0 0 1 1 1 0 Eukaryotic DNA topoisomerase I, DNA binding fragment Mga PF05043.8 gi|305664332|ref|YP_003860620.1| - 0.041 14.1 0.9 0.06 13.6 0.6 1.2 1 0 0 1 1 1 0 Mga helix-turn-helix domain Fe_dep_repress PF01325.14 gi|305664332|ref|YP_003860620.1| - 0.074 13.0 0.0 0.19 11.7 0.0 1.6 1 1 1 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_L6e PF01159.14 gi|305664332|ref|YP_003860620.1| - 0.29 11.4 4.5 0.42 10.8 3.0 1.5 1 1 0 1 1 1 0 Ribosomal protein L6e Topoisom_bac PF01131.15 gi|305664334|ref|YP_003860622.1| - 1.5e-73 247.9 0.0 9.7e-71 238.7 0.0 2.2 1 1 1 2 2 2 2 DNA topoisomerase Toprim PF01751.17 gi|305664334|ref|YP_003860622.1| - 3.1e-22 78.4 0.0 8.9e-22 76.9 0.0 1.9 1 0 0 1 1 1 1 Toprim domain DEAD PF00270.24 gi|305664334|ref|YP_003860622.1| - 9.6e-13 47.9 0.1 2.6e-11 43.3 0.1 2.5 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|305664334|ref|YP_003860622.1| - 1.4e-05 25.0 0.2 3.4e-05 23.7 0.2 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Toprim_4 PF13662.1 gi|305664334|ref|YP_003860622.1| - 0.0005 20.0 0.0 0.0017 18.2 0.0 1.9 1 0 0 1 1 1 1 Toprim domain SecA_DEAD PF07517.9 gi|305664334|ref|YP_003860622.1| - 0.011 15.0 0.2 0.026 13.7 0.0 1.7 2 0 0 2 2 2 0 SecA DEAD-like domain zf-C4pol PF14260.1 gi|305664334|ref|YP_003860622.1| - 0.25 11.3 3.9 5.5 7.0 0.3 2.5 2 0 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DZR PF12773.2 gi|305664334|ref|YP_003860622.1| - 0.55 10.0 4.1 2.4 8.0 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|305664334|ref|YP_003860622.1| - 3.2 7.5 5.2 0.84 9.4 0.6 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Ribonuc_L-PSP PF01042.16 gi|305664335|ref|YP_003860623.1| - 4.2e-39 133.0 0.0 4.7e-39 132.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Cupin_2 PF07883.6 gi|305664336|ref|YP_003860624.1| - 1e-13 50.5 0.1 1.3e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|305664336|ref|YP_003860624.1| - 2.8e-06 27.0 0.1 3.6e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.2 gi|305664336|ref|YP_003860624.1| - 0.00027 20.6 0.0 0.00032 20.4 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.13 gi|305664336|ref|YP_003860624.1| - 0.00031 20.3 0.0 0.00038 20.1 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CarboxypepD_reg PF13620.1 gi|305664337|ref|YP_003860625.1| - 2.9e-05 24.0 0.0 4.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain CBFD_NFYB_HMF PF00808.18 gi|305664337|ref|YP_003860625.1| - 0.0066 16.4 0.4 0.019 15.0 0.0 1.9 2 0 0 2 2 2 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone DUF4480 PF13715.1 gi|305664337|ref|YP_003860625.1| - 0.027 14.5 0.1 0.073 13.1 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4480) YtzH PF14165.1 gi|305664337|ref|YP_003860625.1| - 0.036 14.2 0.0 0.083 13.1 0.0 1.6 1 0 0 1 1 1 0 YtzH-like protein DUF4198 PF10670.4 gi|305664337|ref|YP_003860625.1| - 0.049 13.6 0.0 0.085 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) Trypsin_2 PF13365.1 gi|305664338|ref|YP_003860626.1| - 1.5e-12 47.5 0.0 2.6e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|305664338|ref|YP_003860626.1| - 0.002 17.7 0.1 0.63 9.5 0.0 2.3 2 0 0 2 2 2 2 Trypsin PDZ_2 PF13180.1 gi|305664338|ref|YP_003860626.1| - 0.002 17.9 0.1 0.0046 16.8 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|305664338|ref|YP_003860626.1| - 0.0095 16.0 0.0 0.021 15.0 0.0 1.7 1 0 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) YolD PF08863.5 gi|305664338|ref|YP_003860626.1| - 0.2 11.5 1.8 0.37 10.6 0.1 2.3 3 0 0 3 3 3 0 YolD-like protein ParA PF10609.4 gi|305664339|ref|YP_003860627.1| - 1.8e-24 85.3 0.1 4.3e-24 84.2 0.0 1.7 2 0 0 2 2 2 1 ParA/MinD ATPase like CbiA PF01656.18 gi|305664339|ref|YP_003860627.1| - 1.1e-17 64.1 0.0 2e-17 63.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|305664339|ref|YP_003860627.1| - 1.1e-07 31.1 0.9 2.7e-07 29.9 0.6 1.6 1 0 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|305664339|ref|YP_003860627.1| - 6.6e-06 26.1 0.0 0.00013 21.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|305664339|ref|YP_003860627.1| - 2.5e-05 23.4 0.0 4.7e-05 22.5 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ IstB_IS21 PF01695.12 gi|305664339|ref|YP_003860627.1| - 0.018 14.4 0.0 0.041 13.3 0.0 1.5 2 0 0 2 2 2 0 IstB-like ATP binding protein SRP54 PF00448.17 gi|305664339|ref|YP_003860627.1| - 0.025 14.0 0.2 0.045 13.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|305664339|ref|YP_003860627.1| - 0.029 14.0 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase VirC1 PF07015.6 gi|305664339|ref|YP_003860627.1| - 0.088 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 VirC1 protein Sdh_cyt PF01127.17 gi|305664339|ref|YP_003860627.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AAA_26 PF13500.1 gi|305664339|ref|YP_003860627.1| - 0.13 11.8 1.2 0.82 9.2 0.5 2.1 2 0 0 2 2 2 0 AAA domain Acylphosphatase PF00708.13 gi|305664340|ref|YP_003860628.1| - 3e-17 62.5 0.0 3.6e-17 62.2 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF1115 PF06544.7 gi|305664340|ref|YP_003860628.1| - 0.027 14.1 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1115) Phage_GP20 PF06810.6 gi|305664340|ref|YP_003860628.1| - 0.14 11.6 0.6 0.18 11.2 0.4 1.1 1 0 0 1 1 1 0 Phage minor structural protein GP20 Bromodomain PF00439.20 gi|305664340|ref|YP_003860628.1| - 0.14 12.0 0.3 0.16 11.8 0.2 1.4 1 1 0 1 1 1 0 Bromodomain HTH_3 PF01381.17 gi|305664341|ref|YP_003860629.1| - 0.0015 18.2 0.0 0.022 14.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|305664341|ref|YP_003860629.1| - 0.0077 16.2 0.0 0.028 14.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_psq PF05225.11 gi|305664341|ref|YP_003860629.1| - 0.01 15.4 0.0 0.022 14.2 0.0 1.6 1 0 0 1 1 1 1 helix-turn-helix, Psq domain DUF3991 PF13154.1 gi|305664341|ref|YP_003860629.1| - 0.027 14.6 0.0 4.9 7.4 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3991) DUF95 PF01944.12 gi|305664347|ref|YP_003860635.1| - 0.02 14.5 7.9 0.041 13.5 5.4 1.6 1 1 0 1 1 1 0 Integral membrane protein DUF95 FtsL PF04999.8 gi|305664347|ref|YP_003860635.1| - 0.12 12.1 0.0 0.12 12.1 0.0 2.5 3 0 0 3 3 3 0 Cell division protein FtsL Pneumo_NS1 PF03438.8 gi|305664348|ref|YP_003860636.1| - 0.14 11.9 0.2 15 5.3 0.0 2.6 1 1 1 2 2 2 0 Pneumovirus NS1 protein Zn_ribbon_recom PF13408.1 gi|305664349|ref|YP_003860637.1| - 0.17 12.1 1.0 0.36 11.1 0.7 1.6 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain CBF PF03914.12 gi|305664351|ref|YP_003860639.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 CBF/Mak21 family RNA_pol_I_TF PF04090.7 gi|305664352|ref|YP_003860640.1| - 0.017 14.4 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase I specific initiation factor RuBisCO_large_N PF02788.11 gi|305664353|ref|YP_003860641.1| - 0.037 13.7 0.4 13 5.4 0.0 2.8 2 0 0 2 2 2 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain DNA_pol_B PF00136.16 gi|305664355|ref|YP_003860643.1| - 9e-18 64.2 1.3 7.7e-17 61.2 0.9 2.1 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|305664355|ref|YP_003860643.1| - 1.8e-07 30.3 0.8 0.00096 18.0 0.1 2.9 3 0 0 3 3 3 2 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|305664355|ref|YP_003860643.1| - 2.8e-06 27.2 0.0 1.4e-05 24.9 0.0 2.3 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|305664355|ref|YP_003860643.1| - 0.013 14.9 0.0 0.04 13.4 0.0 1.8 1 1 0 1 1 1 0 3'-5' exonuclease Calici_MSP PF05752.6 gi|305664356|ref|YP_003860644.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Calicivirus minor structural protein DUF3223 PF11523.3 gi|305664358|ref|YP_003860646.1| - 4.5e-07 30.0 0.0 9.5e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3223) DUF3662 PF12401.3 gi|305664358|ref|YP_003860646.1| - 0.052 13.7 0.2 0.1 12.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2662) AP_endonuc_2 PF01261.19 gi|305664359|ref|YP_003860647.1| - 1.3e-23 83.4 0.0 1.6e-23 83.1 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyco_hydro_97 PF10566.4 gi|305664359|ref|YP_003860647.1| - 0.0036 16.4 0.0 0.0055 15.8 0.0 1.3 1 0 0 1 1 1 1 Glycoside hydrolase 97 HMGL-like PF00682.14 gi|305664359|ref|YP_003860647.1| - 0.0067 16.1 0.0 0.012 15.3 0.0 1.5 1 1 0 1 1 1 1 HMGL-like PdxJ PF03740.8 gi|305664359|ref|YP_003860647.1| - 0.045 12.8 0.0 0.072 12.2 0.0 1.4 1 1 0 1 1 1 0 Pyridoxal phosphate biosynthesis protein PdxJ HTH_12 PF08461.5 gi|305664360|ref|YP_003860648.1| - 0.015 14.9 0.0 0.038 13.7 0.0 1.7 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain FAST_1 PF06743.10 gi|305664360|ref|YP_003860648.1| - 0.063 12.9 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 2 0 FAST kinase-like protein, subdomain 1 HTH_24 PF13412.1 gi|305664360|ref|YP_003860648.1| - 0.067 12.5 0.0 0.13 11.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|305664361|ref|YP_003860649.1| - 0.00064 19.3 0.1 0.0071 16.0 0.0 2.7 2 1 0 2 2 2 1 MarR family TrmB PF01978.14 gi|305664361|ref|YP_003860649.1| - 0.0029 17.2 3.8 0.003 17.2 0.1 2.9 4 0 0 4 4 4 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|305664361|ref|YP_003860649.1| - 0.015 14.9 2.8 0.035 13.8 0.1 3.0 4 1 1 5 5 5 0 Ribonuclease R winged-helix domain DUF3801 PF12687.2 gi|305664361|ref|YP_003860649.1| - 0.037 13.5 1.1 0.067 12.7 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3801) LexA_DNA_bind PF01726.11 gi|305664361|ref|YP_003860649.1| - 0.043 13.3 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain HTH_DeoR PF08220.7 gi|305664361|ref|YP_003860649.1| - 0.047 13.2 0.0 0.15 11.5 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_27 PF13463.1 gi|305664361|ref|YP_003860649.1| - 0.066 13.5 0.2 0.6 10.4 0.0 2.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|305664361|ref|YP_003860649.1| - 0.13 12.4 1.9 0.28 11.3 0.2 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain ELL PF10390.4 gi|305664363|ref|YP_003860651.1| - 0.018 14.2 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase II elongation factor ELL DUF2642 PF10842.3 gi|305664364|ref|YP_003860652.1| - 0.0073 15.7 0.1 0.013 14.9 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2642) DUF3349 PF11829.3 gi|305664367|ref|YP_003860655.1| - 0.0082 16.5 0.0 0.018 15.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3349) DUF3353 PF11833.3 gi|305664368|ref|YP_003860656.1| - 0.03 13.7 5.2 0.034 13.6 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) Bax1-I PF01027.15 gi|305664368|ref|YP_003860656.1| - 0.13 11.8 7.5 0.16 11.5 5.2 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF1097 PF06496.6 gi|305664368|ref|YP_003860656.1| - 0.14 11.9 5.3 2.7 7.7 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1097) IlvGEDA_leader PF08046.6 gi|305664368|ref|YP_003860656.1| - 0.25 10.5 4.0 0.6 9.3 2.8 1.6 1 0 0 1 1 1 0 IlvGEDA operon leader peptide DUF805 PF05656.9 gi|305664368|ref|YP_003860656.1| - 0.49 10.2 3.5 0.59 9.9 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) Bac_export_2 PF01312.14 gi|305664368|ref|YP_003860656.1| - 1.2 7.8 4.0 1.3 7.7 2.7 1.0 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family VIT1 PF01988.14 gi|305664368|ref|YP_003860656.1| - 8.6 5.7 9.9 17 4.8 6.9 1.5 1 1 0 1 1 1 0 VIT family DUF2283 PF10049.4 gi|305664371|ref|YP_003860659.1| - 8.8e-16 57.4 1.3 1.3e-15 56.9 0.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2283) FMN_red PF03358.10 gi|305664373|ref|YP_003860661.1| - 2.8e-28 98.3 0.0 4e-28 97.8 0.0 1.2 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|305664373|ref|YP_003860661.1| - 3.1e-12 46.4 0.0 4.7e-12 45.8 0.0 1.3 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_4 PF12682.2 gi|305664373|ref|YP_003860661.1| - 0.069 12.5 0.1 0.14 11.4 0.0 1.6 2 0 0 2 2 2 0 Flavodoxin DIPSY PF11763.3 gi|305664373|ref|YP_003860661.1| - 0.17 11.6 0.9 0.37 10.5 0.2 1.8 2 0 0 2 2 2 0 Cell-wall adhesin ligand-binding C-terminal Asp_protease_2 PF13650.1 gi|305664374|ref|YP_003860662.1| - 4.2e-07 30.3 0.0 8.5e-07 29.3 0.0 1.4 1 1 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|305664374|ref|YP_003860662.1| - 1.2e-05 25.0 0.0 2.8e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|305664374|ref|YP_003860662.1| - 3.3e-05 23.7 0.0 4.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Retroviral aspartyl protease H_PPase PF03030.11 gi|305664375|ref|YP_003860663.1| - 5e-212 705.8 38.6 5.8e-212 705.6 26.8 1.0 1 0 0 1 1 1 1 Inorganic H+ pyrophosphatase